Citrus Sinensis ID: 019586

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------34
Protein Sequence
MQQNNYIEAEDAYRRALSIAPDNNKMCNLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDHILPTTNAIKTRDDFADENIDSNVDVNPIVLSKHRSVKKLFPTANAIKTQENFADENINANIVVNQTVLAQQRGVQQLAPFGNSWNIDAPPFYSSKFVKEPIVKDPIGNQYHESLKRTRSGNATNSMRLPDVGEHTRPFAMEPEKPENKTRRLSQSSEESGDKLSYLLPDDEDFEEAIIAAVLGSTNEQPGKSSEASNNSSVIIEKKIDKRLKVFQDITLSLSPRA
Secondary Structure (PSIPRED)
cccccHHHHHHHHHHHHccccccccccHHHHHHHHcccHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHcccccccccccccccccccccccccHHHHHHcccccccccccHHcccccccccccccccccccccHHccccccHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHHHHHHccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHcccHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHcccccccccccccccccccccccccHHHHHHcccccccccccEEcccccccccccHHHcccccccccccccccHHHHccccccHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccHHHcccccccccccccccccccccccccccccccHcccccccccccccHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHHHHHHHcccccc
Coil and Loop (DISEMBL)
mqqnnyieAEDAYRRAlsiapdnnkmcnLGICLMKQGRIGEAKETLRrvkpavadgprgvdSHLKAYERAQQMLKDLESEMMnkggdrveQSRLFDaflgsssiwqpqpckdhilpttnaiktrddfadenidsnvdvnpivlskhrsvkklfptanaiktqenfadeninanIVVNQTVLAQQRgvqqlapfgnswnidappfysskfvkepivkdpignqyheslkrtrsgnatnsmrlpdvgehtrpfamepekpenktrrlsqsseesgdklsyllpddedFEEAIIAAVLGstneqpgksseasnnssVIIEKKIDKRLKVFQDITLSLSPRA
Flexible Loop (DISEMBL)
mqqnnyieAEDAYRRALsiapdnnkMCNLGICLMKQGRIGEAKetlrrvkpavadgprgvdshLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSssiwqpqpckDHILPTTNAIKTRDDFADENIDSNVDVNPIVLSKHRSVKKLFPTANAIKTQENFADENINANIVVNQTVLAQQRGVQQLAPFGNSWNIDAPPFYSSKFVKEPIVKDpignqyheslkrtrsgnatnsmrlpdvgehtrpfamepekpenktrrlsqsseesgdKLSYLLPDDEDFEEAIIAAVLgstneqpgksseasnnssviiEKKIDKRLKVFqditlslspra
Low Complexity Region (SEG)
MQQNNYIEAEDAYRRALSIAPDNNKMCNLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDHILPTTNAIKTRDDFADENIDSNVDVNPIVLSKHRSVKKLFPTANAIKTQENFADENINANIVVNQTVLAQQRGVQQLAPFGNSWNIDAPPFYSSKFVKEPIVKDPIGNQYHESLKRTRSGNATNSMRLPDVGEHTRPFAMEPEKPENKTRRLSQSSEESGDKLSYLLPDDEDFEEAIIAAVLGSTNEQPGKSSEASNNSSVIIEKKIDKRLKVFQDITLSLSPRA
Disordered region (IsUnstruct)
************YRRALSIAPDNNKMCNLGICLMKQGRIG*****************************************************LFDAFLGSSSIWQPQPCKDHILPTTNAIKTRDDFADENIDSNVDVNPIVLSKHRSVKKLFPTANAIKTQENFADENINANIVVNQTVLAQQRGVQQLAPFGNSWNIDAPPFYSSKFVKEPIVKD*********************************************************************EEAIIAAVL********************IEKKIDKRLKVFQDI********
Disordered Region (DISOPRED)
****NYI*AEDAYRRALSIAPDNNKMCNLGICLMKQGRIGEAKETLRRVKPAVADG*R*******AYERAQQML*********************DAFLGSSSI******************************************************************************************************************************************************************************LLPDDEDFEEAIIAAVLG**************************RLKVFQDITLSLS***
Disordered Region (DISEMBL)
MQQNNYIEAEDAYRRALSIAPDNNKMCNLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDHILPTTNAIKTRDDFADENIDSNVDVNPIVLSKHRSVKKLFPTANAIKTQENFADENINANIVVNQTVLAQQRGVQQLAPFGNSWNIDAPPFYSSKFVKEPIVKDPIGNQYHESLKRTRSGNATNSMRLPDVGEHTRPFAM*********************KLSYLLPDDEDFEEAIIAAVLGST*************SSVIIEKKIDKRLKVFQDITLSLSPRA
Disordered Region (DISPRO)
*QQNNYIEAEDAYRRALSIAPDNNKMCNLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDHILPT******RDDFADENIDSNVDVNPIVLSKHRSVKKLFPT*N*IKTQENFADENINANIVVNQTVLAQQRGVQQLAPFGNSWNIDAPPFYSSKFVK***VKD**********************************************************LSYLLPDDEDFEEAIIAAVLGST**************SVIIEKKIDKRLKVFQDITLSLS***
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MQQNNYIEAEDAYRRALSIAPDNNKMCNLGICLMKQGRIGEAKETLRRVKPAVADGPRGxxxxxxxxxxxxxxxxxxxxxxxxxxxxRVEQSRLFDAFLGSSSIWQPQPCKDHILPTTNAIKTRDDFADENIDSNVDVNPIVLSKHRSVKKLFPTANAIKTQENFADENINANIVVNQTVLAQQRGVQQLAPFGNSWNIDAPPFYSSKFVKEPIVKDPIGNQYHESLKRTRSGNATNSMRLPDVGEHTRPFAMEPEKPENKTRRLSQSSEESGDKLSYLLPDDEDFEEAIIAAVLGSTNEQPGKSSEASNNSSVIIEKKIDKRLKVFQDITLSLSPRA
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	338
255577530	482	conserved hypothetical protein [Ricinus	0.866	0.607	0.630	1e-111
449434138	500	PREDICTED: uncharacterized protein LOC10	0.887	0.6	0.590	1e-104
224133684	454	predicted protein [Populus trichocarpa]	0.792	0.590	0.603	1e-103
225431084	474	PREDICTED: uncharacterized protein LOC10	0.855	0.609	0.594	8e-99
147797595	471	hypothetical protein VITISV_024890 [Viti	0.855	0.613	0.591	3e-97
356502717	500	PREDICTED: uncharacterized protein LOC10	0.863	0.584	0.537	4e-91
359476811	1169	PREDICTED: uncharacterized protein LOC10	0.807	0.233	0.580	3e-90
297734984	449	unnamed protein product [Vitis vinifera]	0.760	0.572	0.586	4e-87
356559262	501	PREDICTED: uncharacterized protein LOC10	0.866	0.584	0.554	2e-86
357517969	479	hypothetical protein MTR_8g075260 [Medic	0.840	0.592	0.559	4e-85

>gi|255577530|ref|XP_002529643.1| conserved hypothetical protein [Ricinus communis] gi|223530869|gb|EEF32730.1| conserved hypothetical protein [Ricinus communis]

 Score =  408 bits (1048), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 215/341 (63%), Positives = 249/341 (73%), Gaps = 48/341 (14%)

Query: 1   MQQNNYIEAEDAYRRALSIAPDNNKMCNLGICLMKQGRIGEAKETLRRVKPAVADGPRGV 60
           MQQNNY+EAEDAYRRALSIAPDNNKMCNLGICLMKQGRI EAK+TLRRVKPAVADGPRGV
Sbjct: 187 MQQNNYVEAEDAYRRALSIAPDNNKMCNLGICLMKQGRISEAKDTLRRVKPAVADGPRGV 246

Query: 61  DSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDHILPTTNA 120
           DSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDH +   NA
Sbjct: 247 DSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDHNILPANA 306

Query: 121 IKTRDDFADENIDSNVDVNPIVLSKHRSVKKLFPTANAIKTQENFADENINANIVVNQTV 180
            K  DDFADEN+DSN+  N  +  + R+VK+L                            
Sbjct: 307 SKLHDDFADENMDSNIVTNQTMFPQQRTVKEL---------------------------- 338

Query: 181 LAQQRGVQQLAPFGNSWNIDAPPFYSSKFVKEPIVKDPIGNQYHESLKRTRSGNATNSMR 240
                   Q AP  NS N+ A PF+SSK VKE     PIGN +HE+LKRTRSGN  NS R
Sbjct: 339 --------QFAPSVNSLNVGARPFFSSKLVKE-----PIGNHFHETLKRTRSGNVANSNR 385

Query: 241 LPDVGEHTRPFAMEPEKPENKTRRLSQSSEESGDKLSYLLPDDEDFEEAIIAAVLGSTNE 300
             ++G  + P A+E EKPE K+RRL   S+E+ + LS LLPD++DFE+AI+AAVLG TNE
Sbjct: 386 KNEMGLFSMP-AVEHEKPETKSRRL---SDETENGLSELLPDNKDFEDAILAAVLGPTNE 441

Query: 301 QPGKS---SEASNNSSVIIEKKIDKRLKVFQDITLSLSPRA 338
             G+    + ++N+++ I + KI+KRLKVFQDITLSLSPRA
Sbjct: 442 AGGRKPVETGSNNSTTAIFQTKIEKRLKVFQDITLSLSPRA 482

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449434138|ref|XP_004134853.1| PREDICTED: uncharacterized protein LOC101220568 [Cucumis sativus]

 Score =  384 bits (985), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 208/352 (59%), Positives = 244/352 (69%), Gaps = 52/352 (14%)

Query: 1   MQQNNYIEAEDAYRRALSIAPDNNKMCNLGICLMKQGRIGEAKETLRRVKPAVADGPRGV 60
           MQQNNY+EAEDAYR+AL+IAPDNNKMCNLGICLMKQGRI EAKE LRRVKPAV DGPRG 
Sbjct: 187 MQQNNYVEAEDAYRKALTIAPDNNKMCNLGICLMKQGRISEAKENLRRVKPAVIDGPRGT 246

Query: 61  DSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDH------I 114
           DSHLKAYERAQQMLKDLESEMMN+GGDR+EQ RLFD FLGSSSIWQPQPCKDH       
Sbjct: 247 DSHLKAYERAQQMLKDLESEMMNRGGDRLEQRRLFDTFLGSSSIWQPQPCKDHTTTTLPT 306

Query: 115 LPTTNAIKT-RDDFADENIDSNVDVNPIVL--SKHRSVKKLFPTANAIKTQENFADENIN 171
           LP TN ++T +DDF DENID+N   N +V    +H+ +K                     
Sbjct: 307 LPVTNPVRTIQDDFGDENIDTNSLTNQMVAPPQQHKFIK--------------------- 345

Query: 172 ANIVVNQTVLAQQRGVQQLAPFGNSWNIDAPPFYSSKFVKEPIVKDPIGNQYHESLKRTR 231
                           Q   P GNS N+ A PF+ SKFV EPI K P+GNQ+ E LKRTR
Sbjct: 346 ----------------QVQVPLGNSLNVAAQPFFLSKFVSEPISKVPLGNQFPEGLKRTR 389

Query: 232 SGNATNSMRLPDVGEHTRPFAMEPEKPENKTRRLSQSSEESGDKLSYLLPDDEDFEEAII 291
           SGNA NSMR+ D+ E  RPF  E  K E KTR+   +SEE+ DK + +LPDD DFEEAI+
Sbjct: 390 SGNAANSMRVNDLVEIKRPFLAELGKTETKTRKPFSTSEET-DKWAEILPDDNDFEEAIL 448

Query: 292 AAVLGSTNEQPGKSSEAS-----NNSSVIIEKKIDKRLKVFQDITLSLSPRA 338
           AAVLGS++++  K + A+          +I++KI+KRLKVF+DITLSLSPRA
Sbjct: 449 AAVLGSSDDEAEKKTTANAGAGGGGGGGVIQRKIEKRLKVFEDITLSLSPRA 500

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224133684|ref|XP_002327655.1| predicted protein [Populus trichocarpa] gi|222836740|gb|EEE75133.1| predicted protein [Populus trichocarpa]

 Score =  382 bits (980), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 204/338 (60%), Positives = 233/338 (68%), Gaps = 70/338 (20%)

Query: 1   MQQNNYIEAEDAYRRALSIAPDNNKMCNLGICLMKQGRIGEAKETLRRVKPAVADGPRGV 60
           MQQNNYIEAEDAYRRAL+ APDNNKMCNLGICLMKQGRIGEAKETLRRVKPAVADGPRGV
Sbjct: 187 MQQNNYIEAEDAYRRALATAPDNNKMCNLGICLMKQGRIGEAKETLRRVKPAVADGPRGV 246

Query: 61  DSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDHILPTTNA 120
           DSHLKAYERAQQMLKDLESEMM+KGGDRVEQ RLFDAFLGSSSIWQPQPCKDH+  T+  
Sbjct: 247 DSHLKAYERAQQMLKDLESEMMSKGGDRVEQRRLFDAFLGSSSIWQPQPCKDHMQATSTK 306

Query: 121 IKTRDDFADENIDSNVDVNPIVLSKHRSVKKLFPTANAIKTQENFADENINANIVVNQTV 180
               DDFA+EN+DSN+  N                                     NQ +
Sbjct: 307 -SHHDDFANENVDSNIVSNQ------------------------------------NQML 329

Query: 181 LAQQRGVQQLAPFGNSWNIDAPPFYSSKFVKEPIVKDPIGNQYHESLKRTRSGNATNSMR 240
             QQ  V+Q APFGN WN+DAPPFYSSK VKEPI K+P  +++HE+LKRTRSG    S R
Sbjct: 330 FPQQNSVKQFAPFGNLWNVDAPPFYSSKLVKEPI-KEP-SHEFHETLKRTRSGKTATSNR 387

Query: 241 LPDVGEHTRPFAMEPEKPENKTRRLSQSSEESGDKLSYLLPDDEDFEEAIIAAVLGSTNE 300
             ++G                  RL   S+E+ DKLS LLPD++DF+EAI+AA+LG    
Sbjct: 388 KIEMG------------------RL---SDETEDKLSQLLPDNDDFDEAILAAILGP--- 423

Query: 301 QPGKSSEASNNSSVIIEKKIDKRLKVFQDITLSLSPRA 338
                  A+N+    ++KKI+KRLKVFQDITLSLSPRA
Sbjct: 424 -------ATNSRKTAVKKKIEKRLKVFQDITLSLSPRA 454

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225431084|ref|XP_002265165.1| PREDICTED: uncharacterized protein LOC100257355 [Vitis vinifera]

 Score =  366 bits (940), Expect = 8e-99,   Method: Compositional matrix adjust.
 Identities = 201/338 (59%), Positives = 231/338 (68%), Gaps = 49/338 (14%)

Query: 1   MQQNNYIEAEDAYRRALSIAPDNNKMCNLGICLMKQGRIGEAKETLRRVKPAVADGPRGV 60
           MQQNNYIEAEDAYRRALS+APDNNKMCNLGICLMKQGRI EAKETLRRVKPAVADGPRGV
Sbjct: 186 MQQNNYIEAEDAYRRALSMAPDNNKMCNLGICLMKQGRILEAKETLRRVKPAVADGPRGV 245

Query: 61  DSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDHILPTTNA 120
           DSHLKA+ERA+QML DLESEM+NKG D VEQSRLFDAFL SS++WQPQPCKD    TTN 
Sbjct: 246 DSHLKAFERARQMLLDLESEMLNKGSDPVEQSRLFDAFLSSSALWQPQPCKDQ--HTTNT 303

Query: 121 IKTRDDFADENIDSNVDVNPIVLSKHRSVKKLFPTANAIKTQENFADENINANIVVNQTV 180
           IK++DDF DEN D+N           R +K                             V
Sbjct: 304 IKSQDDFGDENFDTN-----------RVMK-----------------------------V 323

Query: 181 LAQQRGVQQLAPFGNSWNIDAPPFYSSKFVKEPIVKDPIGNQYHESLKRTRSGNATNSMR 240
           L+ Q+  +  A   NS N+ A PFYSSK       KDPIG    ESLKRTRSG+  NS+ 
Sbjct: 324 LSGQKIAKPTAVHANSLNVAALPFYSSK-----TTKDPIGKPLQESLKRTRSGHGANSIG 378

Query: 241 LPDVGEHTRPFAMEPEKPENKTRRLSQSSEESGDKLSYLLPDDEDFEEAIIAAVLGSTNE 300
           + + G   +P  ME  +PENKTRR S S EE+GDK +  LPD ++FE A+IAAVLGS  E
Sbjct: 379 VNETGAFRKPL-MESMEPENKTRRRSLSPEENGDKWADFLPDSKEFEAALIAAVLGSATE 437

Query: 301 QPGKSSEASNNSSVIIEKKIDKRLKVFQDITLSLSPRA 338
             GK +  + NSS I++ KI+ R KVFQDITLSLSPRA
Sbjct: 438 T-GKKTVETGNSSGILQNKIESRFKVFQDITLSLSPRA 474

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147797595|emb|CAN75795.1| hypothetical protein VITISV_024890 [Vitis vinifera]

 Score =  361 bits (927), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 200/338 (59%), Positives = 230/338 (68%), Gaps = 49/338 (14%)

Query: 1   MQQNNYIEAEDAYRRALSIAPDNNKMCNLGICLMKQGRIGEAKETLRRVKPAVADGPRGV 60
           MQ+NNYIEAEDAYRRALS+ PDNNKMCNLGICLMKQGRI EAKETLRRVKPAVADG RGV
Sbjct: 183 MQRNNYIEAEDAYRRALSMTPDNNKMCNLGICLMKQGRILEAKETLRRVKPAVADGLRGV 242

Query: 61  DSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDHILPTTNA 120
           DSHLKA+ERA+QML DLESEM+ KG D VEQSRLFDAFL SSS+WQPQPCKD    TTN 
Sbjct: 243 DSHLKAFERARQMLLDLESEMLXKGSDPVEQSRLFDAFLSSSSLWQPQPCKDQX--TTNT 300

Query: 121 IKTRDDFADENIDSNVDVNPIVLSKHRSVKKLFPTANAIKTQENFADENINANIVVNQTV 180
           IK++DDF DEN D+N           R +K                             V
Sbjct: 301 IKSQDDFGDENFDTN-----------RVMK-----------------------------V 320

Query: 181 LAQQRGVQQLAPFGNSWNIDAPPFYSSKFVKEPIVKDPIGNQYHESLKRTRSGNATNSMR 240
           L  Q+  +  A   NS N+ A PFYSSK     + KDPIG    ESLKRTRSG A NS+ 
Sbjct: 321 LPGQKIAKPTAVHANSLNVAALPFYSSK-----MTKDPIGKPLQESLKRTRSGLAANSIG 375

Query: 241 LPDVGEHTRPFAMEPEKPENKTRRLSQSSEESGDKLSYLLPDDEDFEEAIIAAVLGSTNE 300
           + + G   +P  ME  +PENKTRR S S EE+GDK + LLPD ++FE A+IAAVLGS  E
Sbjct: 376 VNETGAFRKPL-MESMEPENKTRRRSXSPEENGDKWADLLPDSKEFEAALIAAVLGSATE 434

Query: 301 QPGKSSEASNNSSVIIEKKIDKRLKVFQDITLSLSPRA 338
             GK +  + NSS I++ KI+ RLKVFQDITLS+SPRA
Sbjct: 435 T-GKKTVETGNSSEILQNKIESRLKVFQDITLSMSPRA 471

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356502717|ref|XP_003520163.1| PREDICTED: uncharacterized protein LOC100803414 [Glycine max]

 Score =  341 bits (874), Expect = 4e-91,   Method: Compositional matrix adjust.
 Identities = 193/359 (53%), Positives = 229/359 (63%), Gaps = 67/359 (18%)

Query: 1   MQQNNYIEAEDAYRRALSIAPDNNKMCNLGICLMKQGRIGEAKETLRRVKPAVADGPRGV 60
           MQQNNYIEAEDAYRRALSIAPDNNKMCNLGICLMKQGRIGEAKETL RVKPAV DGPRG 
Sbjct: 188 MQQNNYIEAEDAYRRALSIAPDNNKMCNLGICLMKQGRIGEAKETLYRVKPAVMDGPRGS 247

Query: 61  DSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKD-------H 113
           DSHLKAYERAQQMLKDLESEMMNKG DR+EQSRLF+AFLGSSSIWQPQPCKD        
Sbjct: 248 DSHLKAYERAQQMLKDLESEMMNKGVDRIEQSRLFEAFLGSSSIWQPQPCKDHHHTTTLL 307

Query: 114 ILPTTNAIKTRDDFADENIDSNVDVNPIVLSKHRSVKKLFPTANAIKTQENFADENINAN 173
              T N+ K  D+FADENI+SN+                                     
Sbjct: 308 ATTTINSAKIHDEFADENINSNI------------------------------------- 330

Query: 174 IVVNQTVLAQQRGV-------QQLAPFGNSWNIDAPPFYSSKFVKEPIVKDPIGNQ-YHE 225
           ++ N T L   +G        Q  A  GNS N+ APPFY+S   K  ++++PI NQ + E
Sbjct: 331 MLTNHTALPPSKGSNNNNSNKQVGAILGNSLNVAAPPFYAS---KSSMLREPIENQLFSE 387

Query: 226 SLKRTRSGNATNSMRL------PDVGEHTRPFAMEPEKPENKTRRLSQSSEESGDKLSYL 279
           +LKRTRSGNA  SMR+       ++        +    P+NK+RRLS       +KL+ L
Sbjct: 388 TLKRTRSGNAAGSMRVVSDVRDANINNKKLHVELGVPVPQNKSRRLSSEDAAEKNKLTDL 447

Query: 280 LPDDEDFEEAIIAAVLGSTNEQPGKSSEASNNSSVIIEKKIDKRLKVFQDITLSLSPRA 338
           LP+D++FEEAI+AA+LG+ NE      +  + +S ++      RLKVFQDITLSLSPRA
Sbjct: 448 LPNDDEFEEAILAAILGAPNESDKAYYDTGSTTSRML------RLKVFQDITLSLSPRA 500

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359476811|ref|XP_002265051.2| PREDICTED: uncharacterized protein LOC100245548 [Vitis vinifera]

 Score =  338 bits (866), Expect = 3e-90,   Method: Compositional matrix adjust.
 Identities = 187/322 (58%), Positives = 216/322 (67%), Gaps = 49/322 (15%)

Query: 1   MQQNNYIEAEDAYRRALSIAPDNNKMCNLGICLMKQGRIGEAKETLRRVKPAVADGPRGV 60
           MQ+NNYIEAEDAYRRALS+ PDNNKMCNLGICLMKQGRI EAKETLRRVKPAVADG RGV
Sbjct: 258 MQRNNYIEAEDAYRRALSMTPDNNKMCNLGICLMKQGRILEAKETLRRVKPAVADGLRGV 317

Query: 61  DSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDHILPTTNA 120
           DSHLKA+ERA+QML DLESEM+NKG D VEQSRLFDAFL SSS+WQPQPCKD    TTN 
Sbjct: 318 DSHLKAFERARQMLLDLESEMLNKGSDPVEQSRLFDAFLSSSSLWQPQPCKDQ--HTTNT 375

Query: 121 IKTRDDFADENIDSNVDVNPIVLSKHRSVKKLFPTANAIKTQENFADENINANIVVNQTV 180
           IK++DDF DEN D+N           R +K                             V
Sbjct: 376 IKSQDDFGDENFDTN-----------RVMK-----------------------------V 395

Query: 181 LAQQRGVQQLAPFGNSWNIDAPPFYSSKFVKEPIVKDPIGNQYHESLKRTRSGNATNSMR 240
           L  Q+  +  A   NS N+ A PFYSSK     + KDPIG    ESLKRTRSG A NS+ 
Sbjct: 396 LPGQKIAKPTAVHANSLNVAALPFYSSK-----MTKDPIGKPLQESLKRTRSGLAANSIG 450

Query: 241 LPDVGEHTRPFAMEPEKPENKTRRLSQSSEESGDKLSYLLPDDEDFEEAIIAAVLGSTNE 300
           + + G   +P  ME  +PENKTRR S S EE+GDK + LLPD ++FE A+IAAVLGS  E
Sbjct: 451 VNETGAFRKPL-MESMEPENKTRRQSLSPEENGDKWADLLPDSKEFEAALIAAVLGSATE 509

Query: 301 QPGKSSEASNNSSVIIEKKIDK 322
             GK +  + NSS I++ KI+K
Sbjct: 510 -TGKKTVETGNSSGILQNKIEK 530

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297734984|emb|CBI17346.3| unnamed protein product [Vitis vinifera]

 Score =  327 bits (839), Expect = 4e-87,   Method: Compositional matrix adjust.
 Identities = 179/305 (58%), Positives = 205/305 (67%), Gaps = 48/305 (15%)

Query: 1   MQQNNYIEAEDAYRRALSIAPDNNKMCNLGICLMKQGRIGEAKETLRRVKPAVADGPRGV 60
           MQQNNYIEAEDAYRRALS+APDNNKMCNLGICLMKQGRI EAKETLRRVKPAVADGPRGV
Sbjct: 183 MQQNNYIEAEDAYRRALSMAPDNNKMCNLGICLMKQGRILEAKETLRRVKPAVADGPRGV 242

Query: 61  DSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDHILPTTNA 120
           DSHLKA+ERA+QML DLESEM+NKG D VEQSRLFDAFL SS++WQPQPCKD    TTN 
Sbjct: 243 DSHLKAFERARQMLLDLESEMLNKGSDPVEQSRLFDAFLSSSALWQPQPCKDQ--HTTNT 300

Query: 121 IKTRDDFADENIDSNVDVNPIVLSKHRSVKKLFPTANAIKTQENFADENINANIVVNQTV 180
           IK++DDF DEN D+N           R +K                             V
Sbjct: 301 IKSQDDFGDENFDTN-----------RVMK-----------------------------V 320

Query: 181 LAQQRGVQQLAPFGNSWNIDAPPFYSSKFVKEPIVKDPIGNQYHESLKRTRSGNATNSMR 240
           L+ Q+  +  A   NS N+ A PFYSSK       KDPIG    ESLKRTRSG+  NS+ 
Sbjct: 321 LSGQKIAKPTAVHANSLNVAALPFYSSK-----TTKDPIGKPLQESLKRTRSGHGANSIG 375

Query: 241 LPDVGEHTRPFAMEPEKPENKTRRLSQSSEESGDKLSYLLPDDEDFEEAIIAAVLGSTNE 300
           + + G   +P  ME  +PENKTRR S S EE+GDK +  LPD ++FE A+IAAVLGS  E
Sbjct: 376 VNETGAFRKPL-MESMEPENKTRRRSLSPEENGDKWADFLPDSKEFEAALIAAVLGSATE 434

Query: 301 QPGKS 305
              K+
Sbjct: 435 TGKKT 439

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356559262|ref|XP_003547919.1| PREDICTED: uncharacterized protein LOC100788369 [Glycine max]

 Score =  325 bits (834), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 199/359 (55%), Positives = 233/359 (64%), Gaps = 66/359 (18%)

Query: 1   MQQNNYIEAEDAYRRALSIAPDNNKMCNLGICLMKQGRIGEAKETLRRVKPAVADGPRGV 60
           MQQNNYIEAE+AYRRAL IAPDNNKMCNLGICLMKQGRIGEAKETL RVKPAV DGPRG 
Sbjct: 188 MQQNNYIEAEEAYRRALLIAPDNNKMCNLGICLMKQGRIGEAKETLYRVKPAVMDGPRGS 247

Query: 61  DSHLKAYERAQQMLKDLESEMMNKGG-DRVEQSRLFDAFLGSSSIWQPQPCKDH------ 113
           DSHLKAYERAQQMLKDLESEMMNKGG DR+EQSRLF+AFLGSSSIWQPQPCKDH      
Sbjct: 248 DSHLKAYERAQQMLKDLESEMMNKGGVDRIEQSRLFEAFLGSSSIWQPQPCKDHHHTTLP 307

Query: 114 -ILPTTNAIKTRDDFADENIDSNVDVNPIVLSKHRSVKKLFPTANAIKTQENFADENINA 172
               TTN+ K  D+FADENI+SN+                                    
Sbjct: 308 AAATTTNSAKIHDEFADENINSNI------------------------------------ 331

Query: 173 NIVVNQTVLAQQRGV---QQL-APFGNSWNIDAPPFYSSKFVKEPIVKDPIGNQYHESLK 228
            I  N T L   +G    +QL A  GNS N+ APPFY+S   K  ++++PI N   E+LK
Sbjct: 332 -ISTNHTALPPTKGSNNNKQLGAILGNSLNVAAPPFYASS--KSSMLREPIENHLSETLK 388

Query: 229 RTRSGNATNSMR-LPDVGEHTRPFAMEPEK-------PENKTRRL-SQSSEESGDKLSYL 279
           RTRSGNA  SMR + DV +       +          P+NKTRRL S+ +E++      L
Sbjct: 389 RTRSGNAAGSMRVVSDVRDANNNNNNKKLHVELGVPVPQNKTRRLSSEDAEKNKLTDLDL 448

Query: 280 LPDDEDFEEAIIAAVLGSTNEQPGKSSEASNNSSVIIEKKIDKRLKVFQDITLSLSPRA 338
           LPDD++FEEAI+AA+LG  NE    + + S+ +S ++      RLKVFQDITLSLSPRA
Sbjct: 449 LPDDDEFEEAILAAILGPPNESDKANYDTSSTTSRML------RLKVFQDITLSLSPRA 501

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357517969|ref|XP_003629273.1| hypothetical protein MTR_8g075260 [Medicago truncatula] gi|355523295|gb|AET03749.1| hypothetical protein MTR_8g075260 [Medicago truncatula]

 Score =  320 bits (821), Expect = 4e-85,   Method: Compositional matrix adjust.
 Identities = 194/347 (55%), Positives = 223/347 (64%), Gaps = 63/347 (18%)

Query: 1   MQQNNYIEAEDAYRRALSIAPDNNKMCNLGICLMKQGRIGEAKETLRRVKPAVADGPRGV 60
           MQQNNYIEAE+AYRRAL +APDNNKMCNLGICLMKQGRI EAKETL RVKPAV DGPRG 
Sbjct: 187 MQQNNYIEAEEAYRRALCLAPDNNKMCNLGICLMKQGRIAEAKETLHRVKPAVTDGPRGS 246

Query: 61  DSHLKAYERAQQMLKDLESEMMNKGG-DRVEQSRLFDAFLGSSSIWQPQPCKDHI---LP 116
           DSHLKAYERAQQMLKDLESEMMN+GG DR+EQSRLF+AFLGSSSIWQPQPCKD+I   LP
Sbjct: 247 DSHLKAYERAQQMLKDLESEMMNRGGVDRLEQSRLFEAFLGSSSIWQPQPCKDNIHTSLP 306

Query: 117 --TTNAIKTRDDFADENIDSNVDVNPIVLSKHRSVKKLFPTANAIKTQENFADENINANI 174
              T +   +D+F DENI+SN                                     NI
Sbjct: 307 PMRTTSTTIQDEFGDENINSNT------------------------------------NI 330

Query: 175 VVNQTVLAQQRGVQQLAPF-GNSWNIDAPPFYSSKFVKEPIVKDPIGN-QYHESLKRTRS 232
           V N T   Q +      P   NS N+ APPFY++K       K+   N    E LKRTRS
Sbjct: 331 VKNYTAQPQNK----FTPLVNNSLNVAAPPFYAAK----SSFKESNENLNLSERLKRTRS 382

Query: 233 GNATNSMRLPDVGEHTRPFAMEPEKPENKTRRLSQSSEESGDKLSYLLPDDEDFEEAIIA 292
           GNA   +R+ DV  ++    +E   P NK RRLS       +KL  LLPD +DFE+AI+A
Sbjct: 383 GNAAGLLRVDDV--NSNKVNVELGVPGNKARRLSFEK----NKLCDLLPDTKDFEDAILA 436

Query: 293 AVLGSTNEQPGKSSEASNNSSVIIEKKIDK-RLKVFQDITLSLSPRA 338
           AVLGS+NE   +++  S     I  KKIDK RLKVFQDITLSLSP+A
Sbjct: 437 AVLGSSNELENENAATSG----ICSKKIDKRRLKVFQDITLSLSPKA 479

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	338
TAIR|locus:2080858	430	AT3G51280 "AT3G51280" [Arabido	0.476	0.374	0.652	6.9e-63
TAIR|locus:2158750	469	AT5G44330 [Arabidopsis thalian	0.390	0.281	0.338	1.2e-09
TAIR|locus:2156574	306	ATSDI1 "SULPHUR DEFICIENCY-IND	0.227	0.251	0.407	1.1e-07
TAIR|locus:2133099	450	MS5 "MALE-STERILE 5" [Arabidop	0.195	0.146	0.454	1.6e-07
TAIR|locus:2010612	303	AT1G04770 "AT1G04770" [Arabido	0.224	0.250	0.407	1.7e-05

TAIR|locus:2080858 AT3G51280 "AT3G51280" [Arabidopsis thaliana (taxid:3702)]

 Score = 540 (195.1 bits), Expect = 6.9e-63, Sum P(3) = 6.9e-63
 Identities = 109/167 (65%), Positives = 125/167 (74%)

Query:     1 MQQNNYIEAEDAYRRALSIAPDNNKMCNLGICLMKQGRIGEAKETLRRVKPAVADGPRGV 60
             MQ++N++EAEDAYRRALSIAPDNNKMCNLGICLMKQGRI EAKETLRRVKPAV DGPRGV
Sbjct:   181 MQRDNFVEAEDAYRRALSIAPDNNKMCNLGICLMKQGRIDEAKETLRRVKPAVVDGPRGV 240

Query:    61 DSHLKAYERAQQMLKDLESEMMNKGGD-RVEQSRLFDAFLGSSSIWQPQPCKDHILPTTN 119
             DSHLKAYERAQQML DL SEMM +GGD +VEQ RLFDA  GSSSIWQPQPC +  +    
Sbjct:   241 DSHLKAYERAQQMLNDLGSEMMRRGGDDKVEQRRLFDAIFGSSSIWQPQPCSEQTVKAKP 300

Query:   120 --AIKTRDDFADENIDSNVDVNPIVLSKHR-SVKKLFPTANAIKTQE 163
                +   D + DEN+   + VNP+V++  R   K  F +   I   E
Sbjct:   301 KPGLSNGDGYGDENV--KMSVNPVVVNPLRVDAKPFFSSKLVISNNE 345

GO:0005575 "cellular_component" evidence=ND

GO:0042802 "identical protein binding" evidence=IEA

GO:0006260 "DNA replication" evidence=RCA

GO:0006270 "DNA replication initiation" evidence=RCA

GO:0006275 "regulation of DNA replication" evidence=RCA

GO:0006306 "DNA methylation" evidence=RCA

GO:0008283 "cell proliferation" evidence=RCA

GO:0051567 "histone H3-K9 methylation" evidence=RCA

GO:0051726 "regulation of cell cycle" evidence=RCA

TAIR|locus:2158750 AT5G44330 [Arabidopsis thaliana (taxid:3702)]

 Score = 167 (63.8 bits), Expect = 1.2e-09, P = 1.2e-09
 Identities = 47/139 (33%), Positives = 71/139 (51%)

Query:     1 MQQNNYIEAEDAYRRALSIAPDNNKMCNLGICLMKQGRIGEAKETLRRVKPAVADGPRGV 60
             +Q +NY  AE  YR ALS+ PDNNK+CNL ICL++  R  EAK  L  VK ++ +  +  
Sbjct:   195 LQLHNYGIAEQYYRNALSLEPDNNKLCNLAICLIRMERTHEAKSLLEDVKQSLGNQWKN- 253

Query:    61 DSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDHILPTT-- 118
             +   K++ERA +ML + E   +    + +  S   D F  SS        K  +  T+  
Sbjct:   254 EPFCKSFERATEMLAEREQATVADKPEDLLTSSFSDNF--SSRCSGGMKGKKALAGTSTE 311

Query:   119 --NAIKTRDDFADENIDSN 135
               N  KT    + E+++ N
Sbjct:   312 LGNIHKTNSHASSESVEQN 330

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0006863 "purine nucleobase transport" evidence=RCA

TAIR|locus:2156574 ATSDI1 "SULPHUR DEFICIENCY-INDUCED 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 146 (56.5 bits), Expect = 1.1e-07, P = 1.1e-07
 Identities = 33/81 (40%), Positives = 47/81 (58%)

Query:     1 MQQNNYIEAEDAYRRALSIAPDNNKMCNLGICLMKQGRIGEAKETLRRVKPAVADGPRGV 60
             MQQ  Y+ AE  YR+A  + PD NK CNL +CL+KQGR  E +  L  V   +     G 
Sbjct:   178 MQQAKYLSAEAVYRKAQMVEPDANKSCNLAMCLIKQGRFEEGRLVLDDV---LEYRVLGA 234

Query:    61 DSHLKAYERAQQMLKDLESEM 81
             D   +  +RA+++L +LES +
Sbjct:   235 DD-CRTRQRAEELLSELESSL 254

GO:0005634 "nucleus" evidence=ISM

GO:0006792 "regulation of sulfur utilization" evidence=IMP

GO:0010438 "cellular response to sulfur starvation" evidence=IEP

TAIR|locus:2133099 MS5 "MALE-STERILE 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 148 (57.2 bits), Expect = 1.6e-07, P = 1.6e-07
 Identities = 30/66 (45%), Positives = 43/66 (65%)

Query:    15 RALSIAPDNNKMCNLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQML 74
             RAL +  D NK+CNL ICLM+  RI EAK  L  V+ + A+   G +   K+Y+RA +ML
Sbjct:   232 RALGLERDKNKLCNLAICLMRMSRIPEAKSLLDDVRDSPAESECGDEPFAKSYDRAVEML 291

Query:    75 KDLESE 80
              ++ES+
Sbjct:   292 AEIESK 297

GO:0005634 "nucleus" evidence=ISM;ISS

GO:0009556 "microsporogenesis" evidence=IMP

TAIR|locus:2010612 AT1G04770 "AT1G04770" [Arabidopsis thaliana (taxid:3702)]

 Score = 127 (49.8 bits), Expect = 1.7e-05, P = 1.7e-05
 Identities = 33/81 (40%), Positives = 45/81 (55%)

Query:     1 MQQNNYIEAEDAYRRALSIAPDNNKMCNLGICLMKQGRIGEAKETLRRVKPAVADGPRGV 60
             MQ  +Y  AE  YR+A  I PD NK CNL  CL+KQG+  EA+  L R    + +   G 
Sbjct:   171 MQLMDYTAAEAVYRKAQLIEPDANKACNLCTCLIKQGKHDEARSILFR--DVLMENKEGS 228

Query:    61 -DSHLKAYERAQQMLKDLESE 80
              D  L A  R Q++L +L+ +
Sbjct:   229 GDPRLMA--RVQELLSELKPQ 247


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.312   0.129   0.364    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      338       338   0.00094  116 3  11 23  0.47    34
                                                     33  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  5
  No. of states in DFA:  607 (65 KB)
  Total size of DFA:  218 KB (2121 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  35.04u 0.08s 35.12t   Elapsed:  00:00:01
  Total cpu time:  35.04u 0.08s 35.12t   Elapsed:  00:00:01
  Start:  Mon May 20 18:23:49 2013   End:  Mon May 20 18:23:50 2013

GO:0009658 "chloroplast organization" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: fgenesh4_pm.C_scaffold_57000031 hypothetical protein (454 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	338
cd00189	100	cd00189, TPR, Tetratricopeptide repeat domain; typ	4e-08
pfam13414	69	pfam13414, TPR_11, TPR repeat	1e-05
TIGR02552	135	TIGR02552, LcrH_SycD, type III secretion low calci	3e-04
pfam13424	78	pfam13424, TPR_12, Tetratricopeptide repeat	3e-04
pfam13432	65	pfam13432, TPR_16, Tetratricopeptide repeat	0.001
pfam00515	34	pfam00515, TPR_1, Tetratricopeptide repeat	0.002
pfam07719	34	pfam07719, TPR_2, Tetratricopeptide repeat	0.003

>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)- [FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here

 Score = 50.1 bits (120), Expect = 4e-08
 Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 1/50 (2%)

Query: 1  MQQNNYIEAEDAYRRALSIAPDNNK-MCNLGICLMKQGRIGEAKETLRRV 49
           +  +Y EA + Y +AL + PDN     NL     K G+  EA E   + 
Sbjct: 11 YKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKA 60

Length = 100

>gnl|CDD|222112 pfam13414, TPR_11, TPR repeat

 Score = 42.7 bits (101), Expect = 1e-05
 Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 2/51 (3%)

Query: 1  MQQNNYIEAEDAYRRALSIAPDNNK-MCNLGICLMKQG-RIGEAKETLRRV 49
           +  +Y EA +AY +AL + PDN +   NL +  +K G    EA E L + 
Sbjct: 14 FKLGDYDEAIEAYEKALELDPDNAEAYYNLALAYLKLGKDYEEALEDLEKA 64

Length = 69

>gnl|CDD|233924 TIGR02552, LcrH_SycD, type III secretion low calcium response chaperone LcrH/SycD

 Score = 40.0 bits (94), Expect = 3e-04
 Identities = 20/78 (25%), Positives = 32/78 (41%), Gaps = 5/78 (6%)

Query: 1   MQQNNYIEAEDAYRRALSIAPDNNK-MCNLGICLMKQGRIGEAKETLRRVKPAVADGPRG 59
                Y EA DAY  A ++ PD+ +   +   CL+  G    A + L      +      
Sbjct: 62  QMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLLALGEPESALKALDLA-IEICGEN-- 118

Query: 60  VDSHLKAYERAQQMLKDL 77
              + +  ERA+ ML+ L
Sbjct: 119 -PEYSELKERAEAMLESL 135

Genes in this family are found in type III secretion operons. LcrH, from Yersinia is believed to have a regulatory function in the low-calcium response of the secretion system. The same protein is also known as SycD (SYC = Specific Yop Chaperone) for its chaperone role. In Pseudomonas, where the homolog is known as PcrH, the chaperone role has been demonstrated and the regulatory role appears to be absent. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. Length = 135

>gnl|CDD|205602 pfam13424, TPR_12, Tetratricopeptide repeat

 Score = 38.5 bits (90), Expect = 3e-04
 Identities = 14/57 (24%), Positives = 24/57 (42%), Gaps = 8/57 (14%)

Query: 1  MQQNNYIEAEDAYRRALSIA----PDNNK----MCNLGICLMKQGRIGEAKETLRRV 49
           +  +Y EA +   +AL +A     D+ +    + NL    +  G   EA E L + 
Sbjct: 16 RRLGDYDEALELLEKALELARELGEDHPETARALNNLARLYLALGDYDEALEYLEKA 72

Length = 78

>gnl|CDD|222123 pfam13432, TPR_16, Tetratricopeptide repeat

 Score = 36.5 bits (85), Expect = 0.001
 Identities = 20/58 (34%), Positives = 28/58 (48%), Gaps = 1/58 (1%)

Query: 1  MQQNNYIEAEDAYRRALSIAPDNNKMC-NLGICLMKQGRIGEAKETLRRVKPAVADGP 57
          ++  +Y EA  A   AL+  P   +    LG  L++QGR+ EA   LR    A  D P
Sbjct: 8  LRAGDYDEALAALEAALARYPLAAEALLLLGEALLRQGRLAEAAALLRAALAADPDDP 65

Length = 65

>gnl|CDD|201277 pfam00515, TPR_1, Tetratricopeptide repeat

 Score = 34.7 bits (81), Expect = 0.002
 Identities = 8/23 (34%), Positives = 14/23 (60%)

Query: 1  MQQNNYIEAEDAYRRALSIAPDN 23
          ++   Y EA + Y +AL + P+N
Sbjct: 12 LKLGKYDEALEYYEKALELNPNN 34

Length = 34

>gnl|CDD|191825 pfam07719, TPR_2, Tetratricopeptide repeat

 Score = 34.8 bits (81), Expect = 0.003
 Identities = 9/23 (39%), Positives = 15/23 (65%)

Query: 1  MQQNNYIEAEDAYRRALSIAPDN 23
           +  +Y EA +AY +AL + P+N
Sbjct: 12 YKLGDYEEALEAYEKALELDPNN 34

This Pfam entry includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by pfam00515. Length = 34

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	338
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	99.8
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	99.72
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	99.57
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	99.55
PRK11189	296	lipoprotein NlpI; Provisional	99.48
KOG0553	304	consensus TPR repeat-containing protein [General f	99.45
PRK15359	144	type III secretion system chaperone protein SscB;	99.42
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	99.42
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	99.39
PRK10370	198	formate-dependent nitrite reductase complex subuni	99.39
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	99.36
KOG1126	638	consensus DNA-binding cell division cycle control	99.35
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	99.34
PRK12370	553	invasion protein regulator; Provisional	99.34
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	99.31
PRK12370	553	invasion protein regulator; Provisional	99.27
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	99.27
PRK15359	144	type III secretion system chaperone protein SscB;	99.26
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	99.26
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	99.25
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	99.23
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	99.22
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	99.21
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	99.2
TIGR02552	135	LcrH_SycD type III secretion low calcium response	99.19
PRK11189	296	lipoprotein NlpI; Provisional	99.18
KOG1126	638	consensus DNA-binding cell division cycle control	99.17
KOG0547	606	consensus Translocase of outer mitochondrial membr	99.16
PRK11788	389	tetratricopeptide repeat protein; Provisional	99.15
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	99.13
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	99.12
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	99.12
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	99.09
PRK11788	389	tetratricopeptide repeat protein; Provisional	99.07
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	99.05
PLN02789	320	farnesyltranstransferase	99.03
KOG1125	579	consensus TPR repeat-containing protein [General f	99.0
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	98.97
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	98.96
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	98.94
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	98.93
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	98.92
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	98.91
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	98.91
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	98.9
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	98.89
KOG0547	606	consensus Translocase of outer mitochondrial membr	98.89
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	98.87
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	98.86
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	98.82
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	98.81
KOG1125	579	consensus TPR repeat-containing protein [General f	98.81
PRK14574	822	hmsH outer membrane protein; Provisional	98.8
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	98.8
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	98.8
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	98.78
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	98.78
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	98.77
PRK10370	198	formate-dependent nitrite reductase complex subuni	98.7
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	98.7
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	98.65
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	98.64
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	98.63
KOG0553	304	consensus TPR repeat-containing protein [General f	98.6
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	98.59
KOG2076	895	consensus RNA polymerase III transcription factor	98.58
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	98.57
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	98.56
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	98.56
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	98.55
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	98.55
PLN02789	320	farnesyltranstransferase	98.55
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	98.54
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	98.54
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	98.53
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	98.53
PRK15331	165	chaperone protein SicA; Provisional	98.53
PRK10803	263	tol-pal system protein YbgF; Provisional	98.52
KOG4648	536	consensus Uncharacterized conserved protein, conta	98.52
KOG3060	289	consensus Uncharacterized conserved protein [Funct	98.48
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	98.47
KOG4234	271	consensus TPR repeat-containing protein [General f	98.46
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	98.45
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	98.45
TIGR02552	135	LcrH_SycD type III secretion low calcium response	98.45
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	98.45
PRK11906	458	transcriptional regulator; Provisional	98.43
PF13371	73	TPR_9: Tetratricopeptide repeat	98.43
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	98.43
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	98.43
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	98.42
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	98.39
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	98.36
KOG2003	840	consensus TPR repeat-containing protein [General f	98.35
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	98.34
KOG2076	895	consensus RNA polymerase III transcription factor	98.33
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	98.32
KOG1129	478	consensus TPR repeat-containing protein [General f	98.29
PF12688	120	TPR_5: Tetratrico peptide repeat	98.28
KOG4642	284	consensus Chaperone-dependent E3 ubiquitin protein	98.27
PF13371	73	TPR_9: Tetratricopeptide repeat	98.26
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	98.25
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	98.24
KOG1129	478	consensus TPR repeat-containing protein [General f	98.24
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	98.24
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	98.24
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	98.23
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	98.22
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	98.2
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	98.2
COG4783	484	Putative Zn-dependent protease, contains TPR repea	98.18
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	98.18
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	98.14
PRK14574	822	hmsH outer membrane protein; Provisional	98.13
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	98.11
PF13431	34	TPR_17: Tetratricopeptide repeat	98.08
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	98.07
KOG3060	289	consensus Uncharacterized conserved protein [Funct	98.05
KOG4555	175	consensus TPR repeat-containing protein [Function	98.04
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	98.03
PF13512	142	TPR_18: Tetratricopeptide repeat	98.0
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	97.99
KOG1128	777	consensus Uncharacterized conserved protein, conta	97.99
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	97.97
KOG0495	913	consensus HAT repeat protein [RNA processing and m	97.96
KOG0376	476	consensus Serine-threonine phosphatase 2A, catalyt	97.93
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	97.92
KOG1128	777	consensus Uncharacterized conserved protein, conta	97.92
PF13431	34	TPR_17: Tetratricopeptide repeat	97.9
PRK14720	906	transcript cleavage factor/unknown domain fusion p	97.87
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	97.86
KOG2003	840	consensus TPR repeat-containing protein [General f	97.85
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	97.84
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	97.79
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	97.78
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	97.77
COG4783	484	Putative Zn-dependent protease, contains TPR repea	97.71
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	97.69
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	97.66
PRK10803	263	tol-pal system protein YbgF; Provisional	97.65
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	97.64
PRK14720	906	transcript cleavage factor/unknown domain fusion p	97.64
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	97.63
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	97.63
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	97.61
COG4700	251	Uncharacterized protein conserved in bacteria cont	97.6
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	97.54
KOG0495	913	consensus HAT repeat protein [RNA processing and m	97.53
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	97.53
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	97.53
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	97.52
KOG1308	377	consensus Hsp70-interacting protein Hip/Transient	97.51
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	97.51
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	97.5
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	97.49
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	97.48
PRK11906	458	transcriptional regulator; Provisional	97.43
KOG1130	639	consensus Predicted G-alpha GTPase interaction pro	97.43
PF12688	120	TPR_5: Tetratrico peptide repeat	97.36
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	97.34
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	97.33
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	97.32
KOG4648	536	consensus Uncharacterized conserved protein, conta	97.31
KOG4340	459	consensus Uncharacterized conserved protein [Funct	97.3
PRK15331	165	chaperone protein SicA; Provisional	97.28
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	97.28
COG0457	291	NrfG FOG: TPR repeat [General function prediction	97.28
PLN03077	857	Protein ECB2; Provisional	97.28
KOG2376	652	consensus Signal recognition particle, subunit Srp	97.26
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	97.25
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	97.23
KOG0545	329	consensus Aryl-hydrocarbon receptor-interacting pr	97.22
PF13428	44	TPR_14: Tetratricopeptide repeat	97.2
KOG1130	639	consensus Predicted G-alpha GTPase interaction pro	97.19
PF13428	44	TPR_14: Tetratricopeptide repeat	97.19
COG0457	291	NrfG FOG: TPR repeat [General function prediction	97.17
COG4700	251	Uncharacterized protein conserved in bacteria cont	97.15
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	97.13
PLN03077	857	Protein ECB2; Provisional	97.1
KOG2376	652	consensus Signal recognition particle, subunit Srp	97.07
KOG2796	366	consensus Uncharacterized conserved protein [Funct	97.07
KOG0551	390	consensus Hsp90 co-chaperone CNS1 (contains TPR re	97.03
COG3118	304	Thioredoxin domain-containing protein [Posttransla	96.99
PF12968	144	DUF3856: Domain of Unknown Function (DUF3856); Int	96.99
PF13512	142	TPR_18: Tetratricopeptide repeat	96.99
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	96.95
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	96.94
KOG4234	271	consensus TPR repeat-containing protein [General f	96.93
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	96.91
KOG3785	557	consensus Uncharacterized conserved protein [Funct	96.9
PLN03218	1060	maturation of RBCL 1; Provisional	96.89
COG4105	254	ComL DNA uptake lipoprotein [General function pred	96.87
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	96.79
PRK04841	903	transcriptional regulator MalT; Provisional	96.76
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	96.71
PLN03218	1060	maturation of RBCL 1; Provisional	96.68
KOG4555	175	consensus TPR repeat-containing protein [Function	96.66
smart00028	34	TPR Tetratricopeptide repeats. Repeats present in	96.63
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	96.5
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	96.49
PF09986	214	DUF2225: Uncharacterized protein conserved in bact	96.46
KOG1586	288	consensus Protein required for fusion of vesicles	96.42
PF03704	146	BTAD: Bacterial transcriptional activator domain;	96.4
PRK04841	903	transcriptional regulator MalT; Provisional	96.39
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	96.23
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	96.22
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	96.2
COG3898	531	Uncharacterized membrane-bound protein [Function u	96.15
KOG0545	329	consensus Aryl-hydrocarbon receptor-interacting pr	96.13
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	96.13
COG4976	287	Predicted methyltransferase (contains TPR repeat)	96.08
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	96.06
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	95.81
KOG4642	284	consensus Chaperone-dependent E3 ubiquitin protein	95.78
KOG4507	886	consensus Uncharacterized conserved protein, conta	95.77
KOG3824	472	consensus Huntingtin interacting protein HYPE [Gen	95.7
KOG2610	491	consensus Uncharacterized conserved protein [Funct	95.64
KOG3785	557	consensus Uncharacterized conserved protein [Funct	95.59
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	95.25
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	95.19
PF03704	146	BTAD: Bacterial transcriptional activator domain;	95.06
KOG1310	758	consensus WD40 repeat protein [General function pr	94.96
PF14561	90	TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S	94.71
KOG1915	677	consensus Cell cycle control protein (crooked neck	94.64
KOG1915	677	consensus Cell cycle control protein (crooked neck	94.61
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	94.6
COG4105	254	ComL DNA uptake lipoprotein [General function pred	94.48
COG2976	207	Uncharacterized protein conserved in bacteria [Fun	94.36
PRK10941	269	hypothetical protein; Provisional	94.16
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	94.07
KOG1308	377	consensus Hsp70-interacting protein Hip/Transient	94.06
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	94.05
KOG1941	518	consensus Acetylcholine receptor-associated protei	93.85
KOG1585	308	consensus Protein required for fusion of vesicles	93.83
PF14853	53	Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe	93.78
KOG2053	932	consensus Mitochondrial inheritance and actin cyto	93.73
KOG1586	288	consensus Protein required for fusion of vesicles	93.64
KOG3824	472	consensus Huntingtin interacting protein HYPE [Gen	93.28
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	93.14
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	93.13
KOG4340	459	consensus Uncharacterized conserved protein [Funct	92.92
KOG0376	476	consensus Serine-threonine phosphatase 2A, catalyt	92.62
COG2976	207	Uncharacterized protein conserved in bacteria [Fun	92.59
PF14561	90	TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S	92.13
KOG2047	835	consensus mRNA splicing factor [RNA processing and	91.95
PF10373	278	EST1_DNA_bind: Est1 DNA/RNA binding domain; InterP	91.78
PRK10941	269	hypothetical protein; Provisional	91.71
KOG1070	1710	consensus rRNA processing protein Rrp5 [RNA proces	91.44
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	91.37
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	91.09
COG0790	292	FOG: TPR repeat, SEL1 subfamily [General function	91.05
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	90.96
smart00028	34	TPR Tetratricopeptide repeats. Repeats present in	90.88
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	90.74
PF10373	278	EST1_DNA_bind: Est1 DNA/RNA binding domain; InterP	90.59
KOG1941	518	consensus Acetylcholine receptor-associated protei	90.56
PF02259	352	FAT: FAT domain; InterPro: IPR003151 The FAT domai	90.53
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	90.39
KOG3364	149	consensus Membrane protein involved in organellar	90.1
KOG0551	390	consensus Hsp90 co-chaperone CNS1 (contains TPR re	89.99
PF07721	26	TPR_4: Tetratricopeptide repeat; InterPro: IPR0117	89.67
KOG2396	568	consensus HAT (Half-A-TPR) repeat-containing prote	89.34
KOG1070	1710	consensus rRNA processing protein Rrp5 [RNA proces	89.33
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	89.02
PF04781	111	DUF627: Protein of unknown function (DUF627); Inte	88.9
PF07720	36	TPR_3: Tetratricopeptide repeat; InterPro: IPR0117	88.71
KOG2471	696	consensus TPR repeat-containing protein [General f	88.59
PF10516	38	SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetrat	88.53
COG0790	292	FOG: TPR repeat, SEL1 subfamily [General function	87.95
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	87.58
PF12862	94	Apc5: Anaphase-promoting complex subunit 5	87.4
KOG4507	886	consensus Uncharacterized conserved protein, conta	87.21
PF14853	53	Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe	87.08
COG4976	287	Predicted methyltransferase (contains TPR repeat)	86.89
KOG2610	491	consensus Uncharacterized conserved protein [Funct	86.43
PRK13184	932	pknD serine/threonine-protein kinase; Reviewed	85.92
COG4649	221	Uncharacterized protein conserved in bacteria [Fun	85.25
KOG2300	629	consensus Uncharacterized conserved protein [Funct	84.71
KOG1585	308	consensus Protein required for fusion of vesicles	84.56
COG3914	620	Spy Predicted O-linked N-acetylglucosamine transfe	84.21
KOG1550	552	consensus Extracellular protein SEL-1 and related	84.03
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	83.83
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	82.68
cd02682	75	MIT_AAA_Arch MIT: domain contained within Microtub	82.46
PF08424	321	NRDE-2: NRDE-2, necessary for RNA interference; In	81.83
KOG2796	366	consensus Uncharacterized conserved protein [Funct	81.42
KOG2053	932	consensus Mitochondrial inheritance and actin cyto	81.23
KOG2047	835	consensus mRNA splicing factor [RNA processing and	80.78
PF04910	360	Tcf25: Transcriptional repressor TCF25; InterPro:	80.5
KOG4814	872	consensus Uncharacterized conserved protein [Funct	80.39
PF12862	94	Apc5: Anaphase-promoting complex subunit 5	80.38

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.80  E-value=2.3e-19  Score=182.73  Aligned_cols=196  Identities=16%  Similarity=0.159  Sum_probs=165.2

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcCCHHHHHHHHHh---hCcCCcCC----------CCCHHHHHHHH
Q 019586            2 QQNNYIEAEDAYRRALSIAPDNNKMC-NLGICLMKQGRIGEAKETLRR---VKPAVADG----------PRGVDSHLKAY   67 (338)
Q Consensus         2 q~g~~eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k---~~p~~~d~----------lg~~deAi~~y   67 (338)
                      .+|+.-+||.+|++|++++|.+.++| |||++|...+.|++|+.+|.+   ..|.++.+          +|..+-||..|
T Consensus       230 ~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~A~a~gNla~iYyeqG~ldlAI~~Y  309 (966)
T KOG4626|consen  230 AQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLRPNHAVAHGNLACIYYEQGLLDLAIDTY  309 (966)
T ss_pred             hcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCcchhhccceEEEEeccccHHHHHHHH
Confidence            47899999999999999999999988 999999999999999999999   45666553          88999999999


Q ss_pred             HHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCcc---cccchhhhcCccHHHHHhhhhcccCCChhhh
Q 019586           68 ERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDH---ILPTTNAIKTRDDFADENIDSNVDVNPIVLS  144 (338)
Q Consensus        68 ekAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~---~l~~l~~~~~~~~~A~e~~~~al~~~P~~~~  144 (338)
                      ++||+++|+++++|.|||.++.+.|+..||++||.++|.+.|.++.   .++.+....+.-+.|...+..++.+.|....
T Consensus       310 kral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~~aa  389 (966)
T KOG4626|consen  310 KRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATRLYLKALEVFPEFAA  389 (966)
T ss_pred             HHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHhhChhhhh
Confidence            9999999999999999999999999999999999999999999998   4445566777777888888899988887443


Q ss_pred             hhhhhh-----------hhcchHHHHHHhHhHHHHhhchhhhhhHhhhhhhhhhhhhccccccCCCCCCC
Q 019586          145 KHRSVK-----------KLFPTANAIKTQENFADENINANIVVNQTVLAQQRGVQQLAPFGNSWNIDAPP  203 (338)
Q Consensus       145 K~~~~~-----------kl~~~~~ai~~~~~~~e~y~nlg~~~~~~~~~d~r~~~~~~~~~~~~~~~~~p  203 (338)
                      ...++.           .+.-+..+|...|.|.++|.|.|+    ++...+++..++.-+-.++++  .|
T Consensus       390 a~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGn----t~ke~g~v~~A~q~y~rAI~~--nP  453 (966)
T KOG4626|consen  390 AHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGN----TYKEMGDVSAAIQCYTRAIQI--NP  453 (966)
T ss_pred             hhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcch----HHHHhhhHHHHHHHHHHHHhc--Cc
Confidence            322222           444556789999999999999999    555666666666667777777  55

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.72  E-value=2.8e-17  Score=167.62  Aligned_cols=175  Identities=21%  Similarity=0.250  Sum_probs=143.2

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcCCHHHHHHHHHh---hCcCCcCC----------CCCHHHHHHHH
Q 019586            2 QQNNYIEAEDAYRRALSIAPDNNKMC-NLGICLMKQGRIGEAKETLRR---VKPAVADG----------PRGVDSHLKAY   67 (338)
Q Consensus         2 q~g~~eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k---~~p~~~d~----------lg~~deAi~~y   67 (338)
                      .+|..+-||..|++||+++|++.++| |||+++...|+..||..+|.+   +.|.++++          +|.+++|...|
T Consensus       298 eqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly  377 (966)
T KOG4626|consen  298 EQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATRLY  377 (966)
T ss_pred             ccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHHHH
Confidence            36888899999999999999999977 999999999999999999988   56777774          67889999999


Q ss_pred             HHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCcccc---cchhhhcCccHHHHHhhhhcccCCChhhh
Q 019586           68 ERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDHIL---PTTNAIKTRDDFADENIDSNVDVNPIVLS  144 (338)
Q Consensus        68 ekAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~~l---~~l~~~~~~~~~A~e~~~~al~~~P~~~~  144 (338)
                      ++|+++.|+++.++.|||.+|.++|++++|+.||+.++.++|..++.+   +......++-+.|...+..++.+||-...
T Consensus       378 ~~al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~Ae  457 (966)
T KOG4626|consen  378 LKALEVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAE  457 (966)
T ss_pred             HHHHhhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHH
Confidence            999999999999999999999999999999999999999999887744   33355667777788888888888886554


Q ss_pred             hhhhhh-----------hhcchHHHHHHhHhHHHHhhchhhhh
Q 019586          145 KHRSVK-----------KLFPTANAIKTQENFADENINANIVV  176 (338)
Q Consensus       145 K~~~~~-----------kl~~~~~ai~~~~~~~e~y~nlg~~~  176 (338)
                      .+.++.           .+..+..+++..|+|.++|.|+.-..
T Consensus       458 AhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNllh~l  500 (966)
T KOG4626|consen  458 AHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLLHCL  500 (966)
T ss_pred             HHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHHHHHH
Confidence            333333           45566778888999999999987765

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=99.57  E-value=1.6e-14  Score=145.72  Aligned_cols=170  Identities=12%  Similarity=0.100  Sum_probs=148.5

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcCCHHHHHHHHHhhCcCCcCCCCCHHHHHHHHHHHHHhCCCCHH
Q 019586            1 MQQNNYIEAEDAYRRALSIAPDNNKMC-NLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDLES   79 (338)
Q Consensus         1 mq~g~~eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k~~p~~~d~lg~~deAi~~yekAL~l~Pd~~~   79 (338)
                      |..|+|+.|+.+|..||.++|.++..| |...+|.++|+|                     ++|+..-.++++++|+|+.
T Consensus        13 ~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~---------------------~~al~da~k~~~l~p~w~k   71 (539)
T KOG0548|consen   13 FSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSY---------------------EKALKDATKTRRLNPDWAK   71 (539)
T ss_pred             cccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhH---------------------HHHHHHHHHHHhcCCchhh
Confidence            467999999999999999999999988 999999999999                     6677777889999999999


Q ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCcccccchhhhcCccHHHHHhhhhcccCCChhhhhhhhhhhhcchHHHH
Q 019586           80 EMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDHILPTTNAIKTRDDFADENIDSNVDVNPIVLSKHRSVKKLFPTANAI  159 (338)
Q Consensus        80 a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~~l~~l~~~~~~~~~A~e~~~~al~~~P~~~~K~~~~~kl~~~~~ai  159 (338)
                      +|..+|.++..+|+|++|+..|.+.|+.+|.+..++..+.... ..    ..-....+-.|...+++...+.+...+...
T Consensus        72 gy~r~Gaa~~~lg~~~eA~~ay~~GL~~d~~n~~L~~gl~~a~-~~----~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~  146 (539)
T KOG0548|consen   72 GYSRKGAALFGLGDYEEAILAYSEGLEKDPSNKQLKTGLAQAY-LE----DYAADQLFTKPYFHEKLANLPLTNYSLSDP  146 (539)
T ss_pred             HHHHhHHHHHhcccHHHHHHHHHHHhhcCCchHHHHHhHHHhh-hH----HHHhhhhccCcHHHHHhhcChhhhhhhccH
Confidence            9999999999999999999999999999999988655442211 11    111156677899999999999999999999


Q ss_pred             HHhHhHHHHhhchhhhhhHhhhhhhhhhhhhcc-ccccCC
Q 019586          160 KTQENFADENINANIVVNQTVLAQQRGVQQLAP-FGNSWN  198 (338)
Q Consensus       160 ~~~~~~~e~y~nlg~~~~~~~~~d~r~~~~~~~-~~~~~~  198 (338)
                      .+.........|++.+.  ..+.|||+++++++ ++++++
T Consensus       147 ~~~~~l~~~~~~p~~l~--~~l~d~r~m~a~~~l~~~~~~  184 (539)
T KOG0548|consen  147 AYVKILEIIQKNPTSLK--LYLNDPRLMKADGQLKGVDEL  184 (539)
T ss_pred             HHHHHHHHhhcCcHhhh--cccccHHHHHHHHHHhcCccc
Confidence            99999999999999988  67779999999999 887766

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=99.55  E-value=7.6e-14  Score=145.62  Aligned_cols=194  Identities=11%  Similarity=0.066  Sum_probs=140.0

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcCCHHHHHHHHHhh---CcCCcC----------CCCCHHHHHHHH
Q 019586            2 QQNNYIEAEDAYRRALSIAPDNNKMC-NLGICLMKQGRIGEAKETLRRV---KPAVAD----------GPRGVDSHLKAY   67 (338)
Q Consensus         2 q~g~~eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k~---~p~~~d----------~lg~~deAi~~y   67 (338)
                      .+|++++|+..|+++++++|++...| ++|.++..+|++++|+..|+++   .|.+++          ..|++++|+.+|
T Consensus       343 ~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~  422 (615)
T TIGR00990       343 LKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDY  422 (615)
T ss_pred             HcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            36888888888888888888888766 8888888888888888888883   444443          278888999999


Q ss_pred             HHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCcc---cccchhhhcCccHHHHHhhhhcccCCChhhh
Q 019586           68 ERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDH---ILPTTNAIKTRDDFADENIDSNVDVNPIVLS  144 (338)
Q Consensus        68 ekAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~---~l~~l~~~~~~~~~A~e~~~~al~~~P~~~~  144 (338)
                      +++++++|++..+|.++|.++..+|++++|+..|+++++..|.++.   .++.+....++.+.|...+..++.++|....
T Consensus       423 ~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~  502 (615)
T TIGR00990       423 QKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKP  502 (615)
T ss_pred             HHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCcccc
Confidence            9999888888888888888888899999999999888888888776   3344456777788888888888887775321


Q ss_pred             hhhh------------------hhhhcchHHHHHHhHhHHHHhhchhhhhhHhhhhhhhhhhhhccccccCCC
Q 019586          145 KHRS------------------VKKLFPTANAIKTQENFADENINANIVVNQTVLAQQRGVQQLAPFGNSWNI  199 (338)
Q Consensus       145 K~~~------------------~~kl~~~~~ai~~~~~~~e~y~nlg~~~~~~~~~d~r~~~~~~~~~~~~~~  199 (338)
                      ....                  -.....+.+++...|++..++.++|.    .+++..+..+++..+...+.+
T Consensus       503 ~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~----~~~~~g~~~eAi~~~e~A~~l  571 (615)
T TIGR00990       503 MYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQ----LLLQQGDVDEALKLFERAAEL  571 (615)
T ss_pred             ccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHH----HHHHccCHHHHHHHHHHHHHH
Confidence            1100                  00111233455556677777777777    445566666665555554444

>PRK11189 lipoprotein NlpI; Provisional

Probab=99.48  E-value=5.5e-13  Score=127.74  Aligned_cols=194  Identities=12%  Similarity=0.080  Sum_probs=141.8

Q ss_pred             CCCHHHHHHHHHHHHHh---CCCC-HHHH-HHHHHHHHcCCHHHHHHHHHhh---CcCCcC----------CCCCHHHHH
Q 019586            3 QNNYIEAEDAYRRALSI---APDN-NKMC-NLGICLMKQGRIGEAKETLRRV---KPAVAD----------GPRGVDSHL   64 (338)
Q Consensus         3 ~g~~eeAi~~y~kALel---dPd~-a~a~-nLG~~y~~~G~~dEAi~~~~k~---~p~~~d----------~lg~~deAi   64 (338)
                      .+..+.++..+.++|..   +|.. +.+| ++|.+|...|++++|+..|+++   .|+++.          ..|++++|+
T Consensus        39 ~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~  118 (296)
T PRK11189         39 TLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAY  118 (296)
T ss_pred             chHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHH
Confidence            35678899999999974   4433 4445 9999999999999999999994   555544          288999999


Q ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCcc--cccchhhhcCccHHHHHhhhhcccC-CCh
Q 019586           65 KAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDH--ILPTTNAIKTRDDFADENIDSNVDV-NPI  141 (338)
Q Consensus        65 ~~yekAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~--~l~~l~~~~~~~~~A~e~~~~al~~-~P~  141 (338)
                      ..|+++++++|++..+|.++|.++...|++++|+.+|+++++++|.++.  ++..+....++...|.+.+...+.. +|.
T Consensus       119 ~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~~~~  198 (296)
T PRK11189        119 EAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDPYRALWLYLAESKLDPKQAKENLKQRYEKLDKE  198 (296)
T ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCcc
Confidence            9999999999999999999999999999999999999999999999873  1111223445566677766554432 333


Q ss_pred             hhhh---hhhhhhhcc----------hHHHHHHhHhHHHHhhchhhhhhHhhhhhhhhhhhhccccccCCCC
Q 019586          142 VLSK---HRSVKKLFP----------TANAIKTQENFADENINANIVVNQTVLAQQRGVQQLAPFGNSWNID  200 (338)
Q Consensus       142 ~~~K---~~~~~kl~~----------~~~ai~~~~~~~e~y~nlg~~~~~~~~~d~r~~~~~~~~~~~~~~~  200 (338)
                      ...-   ...+.++..          ...++...++..++|+++|.    .+....+..+++..+...+.++
T Consensus       199 ~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~----~~~~~g~~~~A~~~~~~Al~~~  266 (296)
T PRK11189        199 QWGWNIVEFYLGKISEETLMERLKAGATDNTELAERLCETYFYLAK----YYLSLGDLDEAAALFKLALANN  266 (296)
T ss_pred             ccHHHHHHHHccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH----HHHHCCCHHHHHHHHHHHHHhC
Confidence            2110   001111110          12234667889999999999    5567777888888777777664

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.45  E-value=1.2e-13  Score=131.50  Aligned_cols=96  Identities=19%  Similarity=0.234  Sum_probs=89.1

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcCCHHHHHHHHHhhCcCCcCCCCCHHHHHHHHHHHHHhCCCCHH
Q 019586            1 MQQNNYIEAEDAYRRALSIAPDNNKMC-NLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDLES   79 (338)
Q Consensus         1 mq~g~~eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k~~p~~~d~lg~~deAi~~yekAL~l~Pd~~~   79 (338)
                      |+.++|++|+..|.+||+++|.++.+| |++.+|.++|.|                     +.|++.++.||.++|.+..
T Consensus        92 m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~---------------------~~AVkDce~Al~iDp~ysk  150 (304)
T KOG0553|consen   92 MKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEY---------------------EDAVKDCESALSIDPHYSK  150 (304)
T ss_pred             HHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcch---------------------HHHHHHHHHHHhcChHHHH
Confidence            456899999999999999999999977 999999999999                     6778888889999999999


Q ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCcccccc
Q 019586           80 EMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDHILPT  117 (338)
Q Consensus        80 a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~~l~~  117 (338)
                      +|..||.+|+.+|++.+|+..|+++|.++|++......
T Consensus       151 ay~RLG~A~~~~gk~~~A~~aykKaLeldP~Ne~~K~n  188 (304)
T KOG0553|consen  151 AYGRLGLAYLALGKYEEAIEAYKKALELDPDNESYKSN  188 (304)
T ss_pred             HHHHHHHHHHccCcHHHHHHHHHhhhccCCCcHHHHHH
Confidence            99999999999999999999999999999999864443

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=99.42  E-value=1.2e-12  Score=113.04  Aligned_cols=105  Identities=12%  Similarity=0.037  Sum_probs=92.1

Q ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHcCCHHHHHHHHHhhC---cCCcC----------CCCCHHHHHHHHHHHHHhCC
Q 019586            9 AEDAYRRALSIAPDNNKMCNLGICLMKQGRIGEAKETLRRVK---PAVAD----------GPRGVDSHLKAYERAQQMLK   75 (338)
Q Consensus         9 Ai~~y~kALeldPd~a~a~nLG~~y~~~G~~dEAi~~~~k~~---p~~~d----------~lg~~deAi~~yekAL~l~P   75 (338)
                      -+.+|+++++++|++  .+++|.++...|++++|+.+|+++.   |.++.          ..|++++|+.+|+++++++|
T Consensus        12 ~~~~~~~al~~~p~~--~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p   89 (144)
T PRK15359         12 PEDILKQLLSVDPET--VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDA   89 (144)
T ss_pred             HHHHHHHHHHcCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence            357899999999985  5588999999999999999999944   44333          27899999999999999999


Q ss_pred             CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCcccc
Q 019586           76 DLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDHIL  115 (338)
Q Consensus        76 d~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~~l  115 (338)
                      +++.+|+++|.++..+|++++|+.+|+++++++|+++..+
T Consensus        90 ~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~  129 (144)
T PRK15359         90 SHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWS  129 (144)
T ss_pred             CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHH
Confidence            9999999999999999999999999999999999998733

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=99.42  E-value=7.1e-12  Score=130.86  Aligned_cols=169  Identities=11%  Similarity=0.089  Sum_probs=134.5

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcCCHHHHHHHHHhhCcCCcC-------------CCCCHHHHHHHH
Q 019586            2 QQNNYIEAEDAYRRALSIAPDNNKMC-NLGICLMKQGRIGEAKETLRRVKPAVAD-------------GPRGVDSHLKAY   67 (338)
Q Consensus         2 q~g~~eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k~~p~~~d-------------~lg~~deAi~~y   67 (338)
                      ..|++++|+.+|+++++++|++...+ ++|.+|...|++++|+.+|+++...+|+             .+|++++|+..|
T Consensus       377 ~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~  456 (615)
T TIGR00990       377 ELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATF  456 (615)
T ss_pred             HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence            46899999999999999999999977 9999999999999999999995554444             278999999999


Q ss_pred             HHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCcccccch----------hhhcCccHHHHHhhhhccc
Q 019586           68 ERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDHILPTT----------NAIKTRDDFADENIDSNVD  137 (338)
Q Consensus        68 ekAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~~l~~l----------~~~~~~~~~A~e~~~~al~  137 (338)
                      ++++++.|+.+.+|+.+|.++..+|++++|+.+|+++++++|.+......+          ....++.+.|...+..++.
T Consensus       457 ~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~  536 (615)
T TIGR00990       457 RRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALI  536 (615)
T ss_pred             HHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence            999999999999999999999999999999999999999999865432221          1124666778888888888


Q ss_pred             CCChhhh----hhhhhhhhcchHHHHHHhHhHHHHhh
Q 019586          138 VNPIVLS----KHRSVKKLFPTANAIKTQENFADENI  170 (338)
Q Consensus       138 ~~P~~~~----K~~~~~kl~~~~~ai~~~~~~~e~y~  170 (338)
                      ++|....    ..........+..|+....+..+...
T Consensus       537 l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~  573 (615)
T TIGR00990       537 IDPECDIAVATMAQLLLQQGDVDEALKLFERAAELAR  573 (615)
T ss_pred             cCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhc
Confidence            8887543    23333345555556665554444433

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=99.39  E-value=1.3e-12  Score=143.36  Aligned_cols=284  Identities=10%  Similarity=-0.001  Sum_probs=162.3

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHcCCHHHHHHHHHhhCcCCcC----------CC---CCHHHHHHHHH
Q 019586            2 QQNNYIEAEDAYRRALSIAPDNNKMCNLGICLMKQGRIGEAKETLRRVKPAVAD----------GP---RGVDSHLKAYE   68 (338)
Q Consensus         2 q~g~~eeAi~~y~kALeldPd~a~a~nLG~~y~~~G~~dEAi~~~~k~~p~~~d----------~l---g~~deAi~~ye   68 (338)
                      +.|++++|+.+|++++...|.....+++|.++...|++++|+.+|+++....++          ..   |++++|+.+|+
T Consensus       521 ~~Gr~eeAi~~~rka~~~~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~  600 (987)
T PRK09782        521 QVEDYATALAAWQKISLHDMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLT  600 (987)
T ss_pred             HCCCHHHHHHHHHHHhccCCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence            356777777777777666666555557777777777777777777774333332          12   77888888888


Q ss_pred             HHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCcccccc---hhhhcCccHHHHHhhhhcccCCChhhhh
Q 019586           69 RAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDHILPT---TNAIKTRDDFADENIDSNVDVNPIVLSK  145 (338)
Q Consensus        69 kAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~~l~~---l~~~~~~~~~A~e~~~~al~~~P~~~~K  145 (338)
                      ++++++|+ +.+|.++|.++.++|++++|+.+|+++++++|+++..+..   +....++.+.+.+.+..           
T Consensus       601 ~AL~l~P~-~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~-----------  668 (987)
T PRK09782        601 RSLNIAPS-ANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLER-----------  668 (987)
T ss_pred             HHHHhCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH-----------
Confidence            88888876 7777778888888888888888888888888877763322   23344555555554444           


Q ss_pred             hhhhhhhcchHHHHHHhHhHHHHhhchhhhhhHhhhhhhhhhhhhccccccCCCCCCCcccccCCCCCCCCCCCcch---
Q 019586          146 HRSVKKLFPTANAIKTQENFADENINANIVVNQTVLAQQRGVQQLAPFGNSWNIDAPPFYSSKFVKEPIVKDPIGNQ---  222 (338)
Q Consensus       146 ~~~~~kl~~~~~ai~~~~~~~e~y~nlg~~~~~~~~~d~r~~~~~~~~~~~~~~~~~p~y~~~~~~~~~~~~~~~~~---  222 (338)
                                  ++...|+..+.++|+|.    .++...++..++..+...+.+.         |....++|++|.-   
T Consensus       669 ------------AL~l~P~~~~a~~nLA~----al~~lGd~~eA~~~l~~Al~l~---------P~~a~i~~~~g~~~~~  723 (987)
T PRK09782        669 ------------AHKGLPDDPALIRQLAY----VNQRLDDMAATQHYARLVIDDI---------DNQALITPLTPEQNQQ  723 (987)
T ss_pred             ------------HHHhCCCCHHHHHHHHH----HHHHCCCHHHHHHHHHHHHhcC---------CCCchhhhhhhHHHHH
Confidence                        45566677788888888    4456666666666666666663         2333355555421   


Q ss_pred             ------hhhhhhhccccccccCCcCCCCCCCCCccccCCCCCCcccccccccc-ccc--ccccccCCCCchhHHHHHHHH
Q 019586          223 ------YHESLKRTRSGNATNSMRLPDVGEHTRPFAMEPEKPENKTRRLSQSS-EES--GDKLSYLLPDDEDFEEAIIAA  293 (338)
Q Consensus       223 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~  293 (338)
                            .|+.+.|.=+=+.+..+   .+  .....-.+.++.-...||.|... .+-  +-.+.+-++.+-     -+-+
T Consensus       724 ~~~~~~a~~~~~r~~~~~~~~~a---~~--~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~  793 (987)
T PRK09782        724 RFNFRRLHEEVGRRWTFSFDSSI---GL--RSGAMSTANNNVGGAAPGKSYRSYGQLEAEYRLGRNMLLEG-----DLLS  793 (987)
T ss_pred             HHHHHHHHHHHHHHhhcCccchh---cc--ccchHhhhcccccCCCCCcchhhHHHHHHhhhccccccccc-----chhh
Confidence                  23445554333333332   11  22222344444444666665433 221  112333233333     3345


Q ss_pred             HhccCCCCCCCCCCCCCCchHHHHHHHHhhhhhhhhhhccc
Q 019586          294 VLGSTNEQPGKSSEASNNSSVIIEKKIDKRLKVFQDITLSL  334 (338)
Q Consensus       294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  334 (338)
                      |+|-+.++.|.....+...|  ..--|+-|-|=|.++.+-|
T Consensus       794 ~~~r~~~~~g~~~~~~~~~~--~~~~~g~r~kp~~~~~~~l  832 (987)
T PRK09782        794 VYSRVFADTGENGVMMPVKN--PMSGTGLRWKPLRDQIFFL  832 (987)
T ss_pred             hhhhhhhhcCCCCCCCcccc--ccccceeeeccccccceee
Confidence            66655533221211111111  2445677888888887654

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=99.39  E-value=6.2e-12  Score=114.33  Aligned_cols=111  Identities=13%  Similarity=0.082  Sum_probs=100.4

Q ss_pred             CCCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcCCHHHHHHHHHh---hCcCCcC-----------CCCC--HHHHHH
Q 019586            3 QNNYIEAEDAYRRALSIAPDNNKMC-NLGICLMKQGRIGEAKETLRR---VKPAVAD-----------GPRG--VDSHLK   65 (338)
Q Consensus         3 ~g~~eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k---~~p~~~d-----------~lg~--~deAi~   65 (338)
                      .++.++++..++++++.+|++.+.| .||.+|...|++++|+..|++   +.|++++           ..|+  +++|..
T Consensus        52 ~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~  131 (198)
T PRK10370         52 QQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTRE  131 (198)
T ss_pred             chhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHH
Confidence            3567999999999999999999988 999999999999999999999   4555544           1355  599999


Q ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCcc
Q 019586           66 AYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDH  113 (338)
Q Consensus        66 ~yekAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~  113 (338)
                      .|+++++++|+++.+++++|.++.++|++++|+.+|++++++.|.+..
T Consensus       132 ~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~~  179 (198)
T PRK10370        132 MIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLNSPRVN  179 (198)
T ss_pred             HHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcc
Confidence            999999999999999999999999999999999999999999998665

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=99.36  E-value=6.1e-12  Score=140.41  Aligned_cols=112  Identities=13%  Similarity=0.165  Sum_probs=102.9

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcCCHHHHHHHHHhh---CcCCcC----------------------
Q 019586            2 QQNNYIEAEDAYRRALSIAPDNNKMC-NLGICLMKQGRIGEAKETLRRV---KPAVAD----------------------   55 (338)
Q Consensus         2 q~g~~eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k~---~p~~~d----------------------   55 (338)
                      ..|++++|+..|+++++++|++..++ .+|.+|..+|++++|+.+|+++   .|.+..                      
T Consensus       281 ~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~  360 (1157)
T PRK11447        281 DSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDA  360 (1157)
T ss_pred             HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHH
Confidence            46899999999999999999999977 9999999999999999999993   344321                      


Q ss_pred             --CCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCcc
Q 019586           56 --GPRGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDH  113 (338)
Q Consensus        56 --~lg~~deAi~~yekAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~  113 (338)
                        ..|++++|+..|+++++++|+++.+++.+|.++..+|++++|+.+|+++++++|.+..
T Consensus       361 ~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~  420 (1157)
T PRK11447        361 ALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTN  420 (1157)
T ss_pred             HHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH
Confidence              2689999999999999999999999999999999999999999999999999999876

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=99.35  E-value=2.9e-12  Score=131.97  Aligned_cols=181  Identities=15%  Similarity=0.135  Sum_probs=135.2

Q ss_pred             HHhCCCCHHHH-HHHHHHHHcCCHHHHHHHHHh---hCcCCcCC----------CCCHHHHHHHHHHHHHhCCCCHHHHH
Q 019586           17 LSIAPDNNKMC-NLGICLMKQGRIGEAKETLRR---VKPAVADG----------PRGVDSHLKAYERAQQMLKDLESEMM   82 (338)
Q Consensus        17 LeldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k---~~p~~~d~----------lg~~deAi~~yekAL~l~Pd~~~a~~   82 (338)
                      +..+|+.++.| -+|+||..|++++.|+++|++   +.|.++.+          ...+|.|..+|++||.++|++-.+||
T Consensus       414 i~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYnAwY  493 (638)
T KOG1126|consen  414 IDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHYNAWY  493 (638)
T ss_pred             HhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhhHHHH
Confidence            33456677755 999999999999999999999   45555442          45999999999999999999999999


Q ss_pred             HHHHHHHHCCCHHHHHHHHHHHHccCCCCcccccc---hhhhcCccHHHHHhhhhcccCCChhh----hhhhhhhhhcch
Q 019586           83 NKGGDRVEQSRLFDAFLGSSSIWQPQPCKDHILPT---TNAIKTRDDFADENIDSNVDVNPIVL----SKHRSVKKLFPT  155 (338)
Q Consensus        83 nLG~~l~~lGr~~eAi~~yekALkl~P~~~~~l~~---l~~~~~~~~~A~e~~~~al~~~P~~~----~K~~~~~kl~~~  155 (338)
                      .||.+|+++++++.|.-+|++|++++|.+..++-.   +..+.++.+.|...++.++..+|...    .+...+--++.+
T Consensus       494 GlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~~~~~  573 (638)
T KOG1126|consen  494 GLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASILFSLGRY  573 (638)
T ss_pred             hhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcch
Confidence            99999999999999999999999999999884433   36788899999999999999998732    233333344444


Q ss_pred             HHHHHH-------hHhHHHHhhchhhhhhHhhhhhhhhhhhhccccccCCCCC
Q 019586          156 ANAIKT-------QENFADENINANIVVNQTVLAQQRGVQQLAPFGNSWNIDA  201 (338)
Q Consensus       156 ~~ai~~-------~~~~~e~y~nlg~~~~~~~~~d~r~~~~~~~~~~~~~~~~  201 (338)
                      ..|+..       +|+=.-+++=+|.++.    +-.+...++--++.++++++
T Consensus       574 ~eal~~LEeLk~~vP~es~v~~llgki~k----~~~~~~~Al~~f~~A~~ldp  622 (638)
T KOG1126|consen  574 VEALQELEELKELVPQESSVFALLGKIYK----RLGNTDLALLHFSWALDLDP  622 (638)
T ss_pred             HHHHHHHHHHHHhCcchHHHHHHHHHHHH----HHccchHHHHhhHHHhcCCC
Confidence            444433       4665666666666553    11122233333666677743

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=99.34  E-value=1.4e-11  Score=135.43  Aligned_cols=138  Identities=14%  Similarity=0.062  Sum_probs=87.2

Q ss_pred             CCCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcCCHHHHHHHHHhhC---cCCcC----------CCCCHHHHHHHHH
Q 019586            3 QNNYIEAEDAYRRALSIAPDNNKMC-NLGICLMKQGRIGEAKETLRRVK---PAVAD----------GPRGVDSHLKAYE   68 (338)
Q Consensus         3 ~g~~eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k~~---p~~~d----------~lg~~deAi~~ye   68 (338)
                      .|++++|+.+|++|++++|+ ...+ ++|.++..+|++++|+..|+++.   |+++.          ..|++++|+..|+
T Consensus       589 ~Gr~~eAl~~~~~AL~l~P~-~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~  667 (987)
T PRK09782        589 PGQPELALNDLTRSLNIAPS-ANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLE  667 (987)
T ss_pred             CCCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence            46777777777777777775 5544 77777777777777777777733   33332          2567777777777


Q ss_pred             HHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCccccc---chhhhcCccHHHHHhhhhcccCCCh
Q 019586           69 RAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDHILP---TTNAIKTRDDFADENIDSNVDVNPI  141 (338)
Q Consensus        69 kAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~~l~---~l~~~~~~~~~A~e~~~~al~~~P~  141 (338)
                      +|++++|+++.+++++|.++..+|++++|+.+|+++++++|+++.+..   .+...+....-+.+.+.....++|.
T Consensus       668 ~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~~~~  743 (987)
T PRK09782        668 RAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQALITPLTPEQNQQRFNFRRLHEEVGRRWTFSFD  743 (987)
T ss_pred             HHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHhhcCcc
Confidence            777777777777777777777777777777777777777777666432   2222222223344444444444444

>PRK12370 invasion protein regulator; Provisional

Probab=99.34  E-value=1.6e-11  Score=127.19  Aligned_cols=110  Identities=11%  Similarity=0.066  Sum_probs=97.2

Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHc---------CCHHHHHHHHHhh---CcCCcC----------CCCCH
Q 019586            4 NNYIEAEDAYRRALSIAPDNNKMC-NLGICLMKQ---------GRIGEAKETLRRV---KPAVAD----------GPRGV   60 (338)
Q Consensus         4 g~~eeAi~~y~kALeldPd~a~a~-nLG~~y~~~---------G~~dEAi~~~~k~---~p~~~d----------~lg~~   60 (338)
                      +.+++|+.+|++|++++|+++.+| ++|.||...         +++++|+..++++   .|.++.          ..|++
T Consensus       275 ~~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~  354 (553)
T PRK12370        275 YSLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSEY  354 (553)
T ss_pred             HHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCH
Confidence            357899999999999999999988 999888644         3489999999994   444444          27899


Q ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCcc
Q 019586           61 DSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDH  113 (338)
Q Consensus        61 deAi~~yekAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~  113 (338)
                      ++|+.+|++|++++|+++.+|+++|.++..+|++++|+.+|+++++++|.++.
T Consensus       355 ~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~  407 (553)
T PRK12370        355 IVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAA  407 (553)
T ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChh
Confidence            99999999999999999999999999999999999999999999999999765

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=99.31  E-value=6.8e-11  Score=103.41  Aligned_cols=137  Identities=16%  Similarity=0.191  Sum_probs=112.0

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcCCHHHHHHHHHhhC---cCCcC----------CCCCHHHHHHHH
Q 019586            2 QQNNYIEAEDAYRRALSIAPDNNKMC-NLGICLMKQGRIGEAKETLRRVK---PAVAD----------GPRGVDSHLKAY   67 (338)
Q Consensus         2 q~g~~eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k~~---p~~~d----------~lg~~deAi~~y   67 (338)
                      ..|++++|+..|++++..+|++...+ .+|.+|..+|++++|+..|+++.   |.++.          ..|++++|+..|
T Consensus        43 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~  122 (234)
T TIGR02521        43 EQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKYEQAMQQF  122 (234)
T ss_pred             HCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcccHHHHHHHH
Confidence            46899999999999999999998876 99999999999999999999944   33332          278999999999


Q ss_pred             HHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCccc---ccchhhhcCccHHHHHhhhhcccC
Q 019586           68 ERAQQML--KDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDHI---LPTTNAIKTRDDFADENIDSNVDV  138 (338)
Q Consensus        68 ekAL~l~--Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~~---l~~l~~~~~~~~~A~e~~~~al~~  138 (338)
                      ++++...  +.....+.++|.++...|++++|..+|.++++.+|.+...   ++.+....++.+.+...+...+..
T Consensus       123 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~  198 (234)
T TIGR02521       123 EQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDARAYLERYQQT  198 (234)
T ss_pred             HHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            9999864  4566789999999999999999999999999999987652   223345566666676666665544

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>PRK12370 invasion protein regulator; Provisional

Probab=99.27  E-value=3.5e-11  Score=124.73  Aligned_cols=139  Identities=12%  Similarity=0.066  Sum_probs=117.4

Q ss_pred             CCCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcCCHHHHHHHHHh---hCcCCcC----------CCCCHHHHHHHHH
Q 019586            3 QNNYIEAEDAYRRALSIAPDNNKMC-NLGICLMKQGRIGEAKETLRR---VKPAVAD----------GPRGVDSHLKAYE   68 (338)
Q Consensus         3 ~g~~eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k---~~p~~~d----------~lg~~deAi~~ye   68 (338)
                      .+++++|+.++++|++++|+++.++ .+|.++..+|++++|+..|++   +.|+++.          ..|++++|+.+|+
T Consensus       317 ~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~  396 (553)
T PRK12370        317 QNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTIN  396 (553)
T ss_pred             chHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence            3568999999999999999999988 999999999999999999999   5555554          2899999999999


Q ss_pred             HHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccC-CCCcc---cccchhhhcCccHHHHHhhhhcccCCCh
Q 019586           69 RAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQ-PCKDH---ILPTTNAIKTRDDFADENIDSNVDVNPI  141 (338)
Q Consensus        69 kAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~-P~~~~---~l~~l~~~~~~~~~A~e~~~~al~~~P~  141 (338)
                      ++++++|+++.+++.++.+++..|++++|+.+++++++.. |.++.   .++.+....|+.+.|...+.......|.
T Consensus       397 ~Al~l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~  473 (553)
T PRK12370        397 ECLKLDPTRAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEIT  473 (553)
T ss_pred             HHHhcCCCChhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccch
Confidence            9999999999888888888889999999999999999875 66665   3344456788888888887765554554

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=99.27  E-value=9.6e-11  Score=102.47  Aligned_cols=112  Identities=21%  Similarity=0.218  Sum_probs=100.3

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcCCHHHHHHHHHhhCcC--CcC-------------CCCCHHHHHH
Q 019586            2 QQNNYIEAEDAYRRALSIAPDNNKMC-NLGICLMKQGRIGEAKETLRRVKPA--VAD-------------GPRGVDSHLK   65 (338)
Q Consensus         2 q~g~~eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k~~p~--~~d-------------~lg~~deAi~   65 (338)
                      ..|++++|+.+|++++++.|.+...+ ++|.++..+|++++|+..|+++...  .+.             ..|++++|+.
T Consensus        77 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~  156 (234)
T TIGR02521        77 QLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEK  156 (234)
T ss_pred             HcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHH
Confidence            46899999999999999999998866 9999999999999999999995432  111             2789999999


Q ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCcc
Q 019586           66 AYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDH  113 (338)
Q Consensus        66 ~yekAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~  113 (338)
                      .|+++++..|+...++..+|.++...|++++|..+++++++..|.++.
T Consensus       157 ~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~  204 (234)
T TIGR02521       157 YLTRALQIDPQRPESLLELAELYYLRGQYKDARAYLERYQQTYNQTAE  204 (234)
T ss_pred             HHHHHHHhCcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Confidence            999999999999999999999999999999999999999999776554

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=99.26  E-value=3.3e-11  Score=103.93  Aligned_cols=85  Identities=5%  Similarity=-0.086  Sum_probs=73.2

Q ss_pred             CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCcccccc---hhhhcCccHHHHHhhh
Q 019586           57 PRGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDHILPT---TNAIKTRDDFADENID  133 (338)
Q Consensus        57 lg~~deAi~~yekAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~~l~~---l~~~~~~~~~A~e~~~  133 (338)
                      .|++++|+.+|++++.++|++..+|+++|.++..+|++++|+.+|+++++++|.++..+..   .....|+.+.|...+.
T Consensus        37 ~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~  116 (144)
T PRK15359         37 EGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKMMGEPGLAREAFQ  116 (144)
T ss_pred             cCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            7999999999999999999999999999999999999999999999999999999884433   3556777778887777


Q ss_pred             hcccCCCh
Q 019586          134 SNVDVNPI  141 (338)
Q Consensus       134 ~al~~~P~  141 (338)
                      .++..+|.
T Consensus       117 ~Al~~~p~  124 (144)
T PRK15359        117 TAIKMSYA  124 (144)
T ss_pred             HHHHhCCC
Confidence            76554443

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=99.26  E-value=8.5e-11  Score=124.36  Aligned_cols=143  Identities=13%  Similarity=0.072  Sum_probs=110.2

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcCCHHH----HHHHHHhhC---cCCcC----------CCCCHHHH
Q 019586            2 QQNNYIEAEDAYRRALSIAPDNNKMC-NLGICLMKQGRIGE----AKETLRRVK---PAVAD----------GPRGVDSH   63 (338)
Q Consensus         2 q~g~~eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G~~dE----Ai~~~~k~~---p~~~d----------~lg~~deA   63 (338)
                      ..|++++|+..|+++++++|++...+ ++|.+|..+|++++    |+..|+++.   |.++.          ..|++++|
T Consensus       224 ~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA  303 (656)
T PRK15174        224 AVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIRTGQNEKA  303 (656)
T ss_pred             HCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHH
Confidence            35788888888888888888888766 88888888888885    788888843   44332          26788888


Q ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCcccc---cchhhhcCccHHHHHhhhhcccCCC
Q 019586           64 LKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDHIL---PTTNAIKTRDDFADENIDSNVDVNP  140 (338)
Q Consensus        64 i~~yekAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~~l---~~l~~~~~~~~~A~e~~~~al~~~P  140 (338)
                      +..|+++++++|+++.++.++|.+|..+|++++|+.+|+++++.+|.+....   +.+....++.+.|...+...+..+|
T Consensus       304 ~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P  383 (656)
T PRK15174        304 IPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARA  383 (656)
T ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCh
Confidence            8888888888888888888888888888888888888888888888765411   2234567777888888888887777


Q ss_pred             hhhh
Q 019586          141 IVLS  144 (338)
Q Consensus       141 ~~~~  144 (338)
                      ....
T Consensus       384 ~~~~  387 (656)
T PRK15174        384 SHLP  387 (656)
T ss_pred             hhch
Confidence            7553

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=99.25  E-value=9.5e-11  Score=123.99  Aligned_cols=192  Identities=7%  Similarity=-0.080  Sum_probs=92.3

Q ss_pred             CCCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcCCHHHHHHHHHhh---CcCCcC----------CCCCHHHHHHHHH
Q 019586            3 QNNYIEAEDAYRRALSIAPDNNKMC-NLGICLMKQGRIGEAKETLRRV---KPAVAD----------GPRGVDSHLKAYE   68 (338)
Q Consensus         3 ~g~~eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k~---~p~~~d----------~lg~~deAi~~ye   68 (338)
                      .|++++|+..|+++++++|+++.++ .+|.++..+|++++|+..|+++   .|.++.          ..|++++|+..|+
T Consensus        89 ~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~  168 (656)
T PRK15174         89 SSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLAR  168 (656)
T ss_pred             cCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHH
Confidence            4555555555555555555555544 5555555555555555555552   233222          1455555555555


Q ss_pred             HHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCccc----ccchhhhcCccHHHHHhhhhcccCCChhhh
Q 019586           69 RAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDHI----LPTTNAIKTRDDFADENIDSNVDVNPIVLS  144 (338)
Q Consensus        69 kAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~~----l~~l~~~~~~~~~A~e~~~~al~~~P~~~~  144 (338)
                      +++...|+.+.++..++ .+...|++++|+..|+++++.+|.....    ........++.+.|...+...+..+|....
T Consensus       169 ~~~~~~P~~~~a~~~~~-~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~  247 (656)
T PRK15174        169 TQAQEVPPRGDMIATCL-SFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAA  247 (656)
T ss_pred             HHHHhCCCCHHHHHHHH-HHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHH
Confidence            55555555555544432 2444555555555555555544322110    011122344555555555555555554221


Q ss_pred             hhhhhh---------------hhcchHHHHHHhHhHHHHhhchhhhhhHhhhhhhhhhhhhccccccCCC
Q 019586          145 KHRSVK---------------KLFPTANAIKTQENFADENINANIVVNQTVLAQQRGVQQLAPFGNSWNI  199 (338)
Q Consensus       145 K~~~~~---------------kl~~~~~ai~~~~~~~e~y~nlg~~~~~~~~~d~r~~~~~~~~~~~~~~  199 (338)
                      ....+.               .+..+.+++...|+...++.++|.    .++.+.++.+++..+...+.+
T Consensus       248 ~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~----~l~~~g~~~eA~~~l~~al~l  313 (656)
T PRK15174        248 LRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYAD----ALIRTGQNEKAIPLLQQSLAT  313 (656)
T ss_pred             HHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHH----HHHHCCCHHHHHHHHHHHHHh
Confidence            111000               122233455556666666666666    334444555554444444433

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=99.23  E-value=1.4e-10  Score=107.37  Aligned_cols=112  Identities=19%  Similarity=0.174  Sum_probs=97.1

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcCCHHHHHHHHHh---hCcCCcC----------CCCCHHHHHHH
Q 019586            1 MQQNNYIEAEDAYRRALSIAPDNNKMC-NLGICLMKQGRIGEAKETLRR---VKPAVAD----------GPRGVDSHLKA   66 (338)
Q Consensus         1 mq~g~~eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k---~~p~~~d----------~lg~~deAi~~   66 (338)
                      |+.|++..|...+++||+++|++..+| .++.+|.++|+.+.|-+.|++   +.|...+          .+|++++|...
T Consensus        46 L~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg~~~eA~q~  125 (250)
T COG3063          46 LQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQGRPEEAMQQ  125 (250)
T ss_pred             HHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhCCChHHHHHH
Confidence            468999999999999999999999988 999999999999999999999   4455544          37799999999


Q ss_pred             HHHHHHhCCC---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCcc
Q 019586           67 YERAQQMLKD---LESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDH  113 (338)
Q Consensus        67 yekAL~l~Pd---~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~  113 (338)
                      |++|+.. |.   .+..|.|+|.|.+++|+++.|...|+++|+++|+++.
T Consensus       126 F~~Al~~-P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~  174 (250)
T COG3063         126 FERALAD-PAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPP  174 (250)
T ss_pred             HHHHHhC-CCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCCh
Confidence            9999874 54   4478899999999999999999999999999998877

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=99.22  E-value=8.3e-11  Score=115.92  Aligned_cols=92  Identities=15%  Similarity=0.223  Sum_probs=85.6

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcCCHHHHHHHHHhhCcCCcCCCCCHHHHHHHHHHHHHhCCCCHHH
Q 019586            2 QQNNYIEAEDAYRRALSIAPDNNKMC-NLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDLESE   80 (338)
Q Consensus         2 q~g~~eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k~~p~~~d~lg~~deAi~~yekAL~l~Pd~~~a   80 (338)
                      ..|+|++|+.+|++||+++|++..+| ++|.+|..+|++                     ++|+.++++|++++|+++.+
T Consensus        14 ~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~---------------------~eAl~~~~~Al~l~P~~~~a   72 (356)
T PLN03088         14 VDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNF---------------------TEAVADANKAIELDPSLAKA   72 (356)
T ss_pred             HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH---------------------HHHHHHHHHHHHhCcCCHHH
Confidence            46899999999999999999999977 999999999999                     55666677799999999999


Q ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHccCCCCccc
Q 019586           81 MMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDHI  114 (338)
Q Consensus        81 ~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~~  114 (338)
                      |+++|.+|+.+|+|++|+.+|+++++++|.++..
T Consensus        73 ~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~  106 (356)
T PLN03088         73 YLRKGTACMKLEEYQTAKAALEKGASLAPGDSRF  106 (356)
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHH
Confidence            9999999999999999999999999999998873

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=99.21  E-value=7.4e-11  Score=103.87  Aligned_cols=89  Identities=13%  Similarity=0.063  Sum_probs=81.8

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcCCHHHHHHHHHhhCcCCcCCCCCHHHHHHHHHHHHHhCCCCHHH
Q 019586            2 QQNNYIEAEDAYRRALSIAPDNNKMC-NLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDLESE   80 (338)
Q Consensus         2 q~g~~eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k~~p~~~d~lg~~deAi~~yekAL~l~Pd~~~a   80 (338)
                      +.|++++|+..|+.+..++|.+...| +||.|+..+|+|                     .+|+.+|.+|+.++|+++..
T Consensus        47 ~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~---------------------~~AI~aY~~A~~L~~ddp~~  105 (157)
T PRK15363         47 EVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHW---------------------GEAIYAYGRAAQIKIDAPQA  105 (157)
T ss_pred             HCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhH---------------------HHHHHHHHHHHhcCCCCchH
Confidence            57999999999999999999999977 999999999999                     66677777799999999999


Q ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHccCCCC
Q 019586           81 MMNKGGDRVEQSRLFDAFLGSSSIWQPQPCK  111 (338)
Q Consensus        81 ~~nLG~~l~~lGr~~eAi~~yekALkl~P~~  111 (338)
                      ++++|.+++..|+.+.|+.+|+.++...-.+
T Consensus       106 ~~~ag~c~L~lG~~~~A~~aF~~Ai~~~~~~  136 (157)
T PRK15363        106 PWAAAECYLACDNVCYAIKALKAVVRICGEV  136 (157)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHhccC
Confidence            9999999999999999999999999887433

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=99.20  E-value=2.5e-10  Score=127.64  Aligned_cols=112  Identities=13%  Similarity=0.077  Sum_probs=101.3

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcCCHHHHHHHHHhhC---cCCcC----------------------
Q 019586            2 QQNNYIEAEDAYRRALSIAPDNNKMC-NLGICLMKQGRIGEAKETLRRVK---PAVAD----------------------   55 (338)
Q Consensus         2 q~g~~eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k~~---p~~~d----------------------   55 (338)
                      ..|++++|+.+|+++++++|++..++ ++|.+|..+|++++|+.+|+++.   |.+..                      
T Consensus       363 ~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~~~~A~~~l~  442 (1157)
T PRK11447        363 KANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQSPEKALAFIA  442 (1157)
T ss_pred             HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCHHHHHHHHH
Confidence            46899999999999999999999877 99999999999999999999943   44321                      


Q ss_pred             ------------------------------CCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Q 019586           56 ------------------------------GPRGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIW  105 (338)
Q Consensus        56 ------------------------------~lg~~deAi~~yekAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekAL  105 (338)
                                                    ..|++++|+.+|+++++++|+++.+++.+|.+|..+|++++|+..|++++
T Consensus       443 ~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al  522 (1157)
T PRK11447        443 SLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQADALMRRLA  522 (1157)
T ss_pred             hCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence                                          14899999999999999999999999999999999999999999999999


Q ss_pred             ccCCCCcc
Q 019586          106 QPQPCKDH  113 (338)
Q Consensus       106 kl~P~~~~  113 (338)
                      +.+|.++.
T Consensus       523 ~~~P~~~~  530 (1157)
T PRK11447        523 QQKPNDPE  530 (1157)
T ss_pred             HcCCCCHH
Confidence            99999876

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=99.19  E-value=1.5e-10  Score=96.49  Aligned_cols=103  Identities=14%  Similarity=0.093  Sum_probs=90.3

Q ss_pred             HHHHHHHHhCCCCHHHH-HHHHHHHHcCCHHHHHHHHHhhC---cCCcC----------CCCCHHHHHHHHHHHHHhCCC
Q 019586           11 DAYRRALSIAPDNNKMC-NLGICLMKQGRIGEAKETLRRVK---PAVAD----------GPRGVDSHLKAYERAQQMLKD   76 (338)
Q Consensus        11 ~~y~kALeldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k~~---p~~~d----------~lg~~deAi~~yekAL~l~Pd   76 (338)
                      +.|++++.++|++.... .+|.++...|++++|+..|+++.   |.++.          ..|++++|+.+|+++++++|+
T Consensus         4 ~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~   83 (135)
T TIGR02552         4 ATLKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPD   83 (135)
T ss_pred             hhHHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence            57889999999887755 99999999999999999998843   43333          267899999999999999999


Q ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCcc
Q 019586           77 LESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDH  113 (338)
Q Consensus        77 ~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~  113 (338)
                      ++..++++|.++...|++++|+..|+++++++|++..
T Consensus        84 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~  120 (135)
T TIGR02552        84 DPRPYFHAAECLLALGEPESALKALDLAIEICGENPE  120 (135)
T ss_pred             ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccch
Confidence            9999999999999999999999999999999998766

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>PRK11189 lipoprotein NlpI; Provisional

Probab=99.18  E-value=2.2e-10  Score=109.74  Aligned_cols=76  Identities=20%  Similarity=0.154  Sum_probs=38.7

Q ss_pred             CCCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcCCHHHHHHHHHhh---CcCCcC----------CCCCHHHHHHHHH
Q 019586            3 QNNYIEAEDAYRRALSIAPDNNKMC-NLGICLMKQGRIGEAKETLRRV---KPAVAD----------GPRGVDSHLKAYE   68 (338)
Q Consensus         3 ~g~~eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k~---~p~~~d----------~lg~~deAi~~ye   68 (338)
                      .|++++|+..|++|++++|+++.+| ++|.+|..+|++++|+..|+++   .|.+..          ..|++++|+..|+
T Consensus        77 ~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~  156 (296)
T PRK11189         77 LGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLL  156 (296)
T ss_pred             CCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence            3555555555555555555555544 5555555555555555555552   222222          1345555555555


Q ss_pred             HHHHhCCCCH
Q 019586           69 RAQQMLKDLE   78 (338)
Q Consensus        69 kAL~l~Pd~~   78 (338)
                      ++++++|+++
T Consensus       157 ~al~~~P~~~  166 (296)
T PRK11189        157 AFYQDDPNDP  166 (296)
T ss_pred             HHHHhCCCCH
Confidence            5555555544

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=99.17  E-value=6.7e-11  Score=122.05  Aligned_cols=153  Identities=12%  Similarity=0.054  Sum_probs=117.9

Q ss_pred             CCCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcCCHHHHHHHHHhhCcCCcC-------------CCCCHHHHHHHHH
Q 019586            3 QNNYIEAEDAYRRALSIAPDNNKMC-NLGICLMKQGRIGEAKETLRRVKPAVAD-------------GPRGVDSHLKAYE   68 (338)
Q Consensus         3 ~g~~eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k~~p~~~d-------------~lg~~deAi~~ye   68 (338)
                      +++++.||++|++|+.+||+++.+| -+|.=+.....||.|..+|+++...++.             .+++++.|...|+
T Consensus       434 Qkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fq  513 (638)
T KOG1126|consen  434 QKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHYNAWYGLGTVYLKQEKLEFAEFHFQ  513 (638)
T ss_pred             hhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhhHHHHhhhhheeccchhhHHHHHHH
Confidence            5688999999999999999888888 8888888888899999999884433332             2668899999999


Q ss_pred             HHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCcc---cccchhhhcCccHHHHHhhhhcccCCChhhhh
Q 019586           69 RAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDH---ILPTTNAIKTRDDFADENIDSNVDVNPIVLSK  145 (338)
Q Consensus        69 kAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~---~l~~l~~~~~~~~~A~e~~~~al~~~P~~~~K  145 (338)
                      +|++++|.+......+|.++.++|+.++|+..|++|+.++|.++.   ..+.+....++.+.+...+..-..+-|.-.++
T Consensus       514 kA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~es~v  593 (638)
T KOG1126|consen  514 KAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASILFSLGRYVEALQELEELKELVPQESSV  593 (638)
T ss_pred             hhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcchHHHHHHHHHHHHhCcchHHH
Confidence            999999998888888899999999999999999999999998876   22233455666667766666666666776666


Q ss_pred             hhhhhhhcch
Q 019586          146 HRSVKKLFPT  155 (338)
Q Consensus       146 ~~~~~kl~~~  155 (338)
                      ..-+.+++..
T Consensus       594 ~~llgki~k~  603 (638)
T KOG1126|consen  594 FALLGKIYKR  603 (638)
T ss_pred             HHHHHHHHHH
Confidence            6555555444

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.16  E-value=1.8e-10  Score=115.85  Aligned_cols=193  Identities=10%  Similarity=0.102  Sum_probs=132.6

Q ss_pred             CCCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcCCHHHHHHHHHh---hCcCCcCC----------CCCHHHHHHHHH
Q 019586            3 QNNYIEAEDAYRRALSIAPDNNKMC-NLGICLMKQGRIGEAKETLRR---VKPAVADG----------PRGVDSHLKAYE   68 (338)
Q Consensus         3 ~g~~eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k---~~p~~~d~----------lg~~deAi~~ye   68 (338)
                      .|++-.|-..|.++|+++|.+...| .+|.+|..+.+-++-...|.+   ++|.+++.          ++++++|+..|+
T Consensus       339 ~g~~~~a~~d~~~~I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~  418 (606)
T KOG0547|consen  339 KGDSLGAQEDFDAAIKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQ  418 (606)
T ss_pred             cCCchhhhhhHHHHHhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHH
Confidence            4667777777777777777777755 777777777777777777777   56666652          557777777777


Q ss_pred             HHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCcccc---cchhhhcCccHHHHHhhhhcccCCChh---
Q 019586           69 RAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDHIL---PTTNAIKTRDDFADENIDSNVDVNPIV---  142 (338)
Q Consensus        69 kAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~~l---~~l~~~~~~~~~A~e~~~~al~~~P~~---  142 (338)
                      +|+.++|++.-+|..++.+++++++++++...|+.+.+.-|..++.+   +.+..-+.+.+-|.+.++.++.+.|..   
T Consensus       419 Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~  498 (606)
T KOG0547|consen  419 KAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLI  498 (606)
T ss_pred             HHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccc
Confidence            77777777777777777777777777777777777777777777622   333444555555677777777766651   


Q ss_pred             ---------------hhhhhhhhhhcchHHHHHHhHhHHHHhhchhhhhhHhhhhhhhhhhhhccccccCCC
Q 019586          143 ---------------LSKHRSVKKLFPTANAIKTQENFADENINANIVVNQTVLAQQRGVQQLAPFGNSWNI  199 (338)
Q Consensus       143 ---------------~~K~~~~~kl~~~~~ai~~~~~~~e~y~nlg~~~~~~~~~d~r~~~~~~~~~~~~~~  199 (338)
                                     +++..-...+--..+|++..|+|-.+|..+|.+.    +++.++..+|.-+..+.++
T Consensus       499 ~v~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~----lQ~~~i~eAielFEksa~l  566 (606)
T KOG0547|consen  499 IVNAAPLVHKALLVLQWKEDINQAENLLRKAIELDPKCEQAYETLAQFE----LQRGKIDEAIELFEKSAQL  566 (606)
T ss_pred             cccchhhhhhhHhhhchhhhHHHHHHHHHHHHccCchHHHHHHHHHHHH----HHHhhHHHHHHHHHHHHHH
Confidence                           1122222233344568888999999999999844    6667777776655544433

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=99.15  E-value=6.7e-10  Score=107.89  Aligned_cols=139  Identities=10%  Similarity=-0.022  Sum_probs=76.9

Q ss_pred             CCCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcCCHHHHHHHHHhhC---cCCcC---------------CCCCHHHH
Q 019586            3 QNNYIEAEDAYRRALSIAPDNNKMC-NLGICLMKQGRIGEAKETLRRVK---PAVAD---------------GPRGVDSH   63 (338)
Q Consensus         3 ~g~~eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k~~---p~~~d---------------~lg~~deA   63 (338)
                      .|++++|+.+|+++++.+|.+...+ .++.++..+|++++|+..|+++.   |....               ..|++++|
T Consensus       120 ~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A  199 (389)
T PRK11788        120 AGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAA  199 (389)
T ss_pred             CCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHH
Confidence            4566666666666666655555544 66666666666666666666522   11110               13566666


Q ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCcc----cccchhhhcCccHHHHHhhhhcccCC
Q 019586           64 LKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDH----ILPTTNAIKTRDDFADENIDSNVDVN  139 (338)
Q Consensus        64 i~~yekAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~----~l~~l~~~~~~~~~A~e~~~~al~~~  139 (338)
                      +.+|++++++.|+...+++.+|.++...|++++|+..|+++++.+|.+..    .+..+....++.+.+...+...+..+
T Consensus       200 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~  279 (389)
T PRK11788        200 RALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEY  279 (389)
T ss_pred             HHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence            66666666666666666666666666666666666666666666554321    11112334455555555555544444


Q ss_pred             Ch
Q 019586          140 PI  141 (338)
Q Consensus       140 P~  141 (338)
                      |.
T Consensus       280 p~  281 (389)
T PRK11788        280 PG  281 (389)
T ss_pred             CC
Confidence            43

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=99.13  E-value=1.2e-09  Score=113.88  Aligned_cols=138  Identities=17%  Similarity=0.200  Sum_probs=71.3

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcCCHHHHHHHHHhhCcCCcC-------------CCCCHHHHHHHH
Q 019586            2 QQNNYIEAEDAYRRALSIAPDNNKMC-NLGICLMKQGRIGEAKETLRRVKPAVAD-------------GPRGVDSHLKAY   67 (338)
Q Consensus         2 q~g~~eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k~~p~~~d-------------~lg~~deAi~~y   67 (338)
                      +.|++++|+..|+++++++|++...+ .++.++...|++++|+..++++....+.             ..|++++|+..|
T Consensus       647 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~  726 (899)
T TIGR02917       647 VMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAY  726 (899)
T ss_pred             HcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHH
Confidence            35778888888888888887766644 5565665566666555555553222221             144555555555


Q ss_pred             HHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCcccc---cchhhhcCccHHHHHhhhhcccCCC
Q 019586           68 ERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDHIL---PTTNAIKTRDDFADENIDSNVDVNP  140 (338)
Q Consensus        68 ekAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~~l---~~l~~~~~~~~~A~e~~~~al~~~P  140 (338)
                      ++++...|+. ..+.++|.++...|++++|+..++++++..|.+...+   +.+....++.+.|.+.+...+..+|
T Consensus       727 ~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p  801 (899)
T TIGR02917       727 RKALKRAPSS-QNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAP  801 (899)
T ss_pred             HHHHhhCCCc-hHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCC
Confidence            5555554444 3444445555555555555555555555444444311   1112334444444444444444444

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=99.12  E-value=4.5e-10  Score=119.56  Aligned_cols=111  Identities=10%  Similarity=0.010  Sum_probs=102.5

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcCCHHHHHHHHHhhCcCCcC-------------CCCCHHHHHHHH
Q 019586            2 QQNNYIEAEDAYRRALSIAPDNNKMC-NLGICLMKQGRIGEAKETLRRVKPAVAD-------------GPRGVDSHLKAY   67 (338)
Q Consensus         2 q~g~~eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k~~p~~~d-------------~lg~~deAi~~y   67 (338)
                      +.|.+++|+.++++++++.|++..++ +++.++.+++++++|...++++.+..|+             .+|++++|+.+|
T Consensus        98 ~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a~~l~~~g~~~~A~~~y  177 (694)
T PRK15179         98 AAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLEAKSWDEIGQSEQADACF  177 (694)
T ss_pred             HcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhcchHHHHHHH
Confidence            57999999999999999999999988 9999999999999999999997666655             389999999999


Q ss_pred             HHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCc
Q 019586           68 ERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKD  112 (338)
Q Consensus        68 ekAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~  112 (338)
                      ++++..+|+.+.+|.++|.++...|+.++|..+|+++++....-.
T Consensus       178 ~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~  222 (694)
T PRK15179        178 ERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGA  222 (694)
T ss_pred             HHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcch
Confidence            999999999999999999999999999999999999998865433

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=99.12  E-value=1.1e-09  Score=114.00  Aligned_cols=184  Identities=11%  Similarity=0.017  Sum_probs=135.2

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcCCHHHHHHHHHhhCcCCcC------------CCCCHHHHHHHHH
Q 019586            2 QQNNYIEAEDAYRRALSIAPDNNKMC-NLGICLMKQGRIGEAKETLRRVKPAVAD------------GPRGVDSHLKAYE   68 (338)
Q Consensus         2 q~g~~eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k~~p~~~d------------~lg~~deAi~~ye   68 (338)
                      ..|++++|+..++++.+..|.....+ .+|.++...|++++|+..|+++....+.            ..|++++|+..++
T Consensus       681 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~  760 (899)
T TIGR02917       681 AAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNAIKLHRALLASGNTAEAVKTLE  760 (899)
T ss_pred             HcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHCCCHHHHHHHHH
Confidence            46889999999999999998888866 8899999999999999999984433332            2789999999999


Q ss_pred             HHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCcccccch---hhhcCccHHHHHhhhhcccCCChhhhh
Q 019586           69 RAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDHILPTT---NAIKTRDDFADENIDSNVDVNPIVLSK  145 (338)
Q Consensus        69 kAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~~l~~l---~~~~~~~~~A~e~~~~al~~~P~~~~K  145 (338)
                      ++++..|++..+++.+|.+|..+|++++|+.+|+++++..|.++..+..+   ....+. ..+.+.+...+...|.....
T Consensus       761 ~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~  839 (899)
T TIGR02917       761 AWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAI  839 (899)
T ss_pred             HHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHH
Confidence            99999999999999999999999999999999999999999877633322   344555 55777777777766654322


Q ss_pred             hhhh----h-------hhcchHHHHHHhHhHHHHhhchhhhhhHhhhhhhhhhhhh
Q 019586          146 HRSV----K-------KLFPTANAIKTQENFADENINANIVVNQTVLAQQRGVQQL  190 (338)
Q Consensus       146 ~~~~----~-------kl~~~~~ai~~~~~~~e~y~nlg~~~~~~~~~d~r~~~~~  190 (338)
                      ...+    .       .+..+.+++...|...+++.+++.    .++...++..++
T Consensus       840 ~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~----~~~~~g~~~~A~  891 (899)
T TIGR02917       840 LDTLGWLLVEKGEADRALPLLRKAVNIAPEAAAIRYHLAL----ALLATGRKAEAR  891 (899)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHH----HHHHcCCHHHHH
Confidence            2111    1       222234566666777778888877    445555555544

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=99.09  E-value=7e-10  Score=102.89  Aligned_cols=112  Identities=23%  Similarity=0.280  Sum_probs=102.7

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcCCHHHHHHHHHh--hCcCCcC-------------CCCCHHHHHH
Q 019586            2 QQNNYIEAEDAYRRALSIAPDNNKMC-NLGICLMKQGRIGEAKETLRR--VKPAVAD-------------GPRGVDSHLK   65 (338)
Q Consensus         2 q~g~~eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k--~~p~~~d-------------~lg~~deAi~   65 (338)
                      ++|+.+-|.+.|++|+.++|++.+.+ |+|..++.+|++++|..+|++  ..|.++.             ..|+++.|..
T Consensus        81 ~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~  160 (250)
T COG3063          81 KLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEE  160 (250)
T ss_pred             HcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHH
Confidence            57899999999999999999999977 999999999999999999999  5566665             2789999999


Q ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCcc
Q 019586           66 AYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDH  113 (338)
Q Consensus        66 ~yekAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~  113 (338)
                      +|+++|+++|+++.+...++..+++.|+|.+|...+++....-+..+.
T Consensus       161 ~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~~~~A~  208 (250)
T COG3063         161 YLKRALELDPQFPPALLELARLHYKAGDYAPARLYLERYQQRGGAQAE  208 (250)
T ss_pred             HHHHHHHhCcCCChHHHHHHHHHHhcccchHHHHHHHHHHhcccccHH
Confidence            999999999999999999999999999999999999998877775554

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=99.07  E-value=2.2e-09  Score=104.26  Aligned_cols=140  Identities=11%  Similarity=0.049  Sum_probs=115.5

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcCCHHHHHHHHHhhCcCC--cC---------------CCCCHHHH
Q 019586            2 QQNNYIEAEDAYRRALSIAPDNNKMC-NLGICLMKQGRIGEAKETLRRVKPAV--AD---------------GPRGVDSH   63 (338)
Q Consensus         2 q~g~~eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k~~p~~--~d---------------~lg~~deA   63 (338)
                      ..|++++|+..|+++++.+|++...+ .+|.+|..+|++++|+..++++....  ..               ..|++++|
T Consensus        47 ~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~~A  126 (389)
T PRK11788         47 LNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLDRA  126 (389)
T ss_pred             hcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHHHH
Confidence            35899999999999999999998866 99999999999999999999943321  10               26899999


Q ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCccc--------ccchhhhcCccHHHHHhhhhc
Q 019586           64 LKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDHI--------LPTTNAIKTRDDFADENIDSN  135 (338)
Q Consensus        64 i~~yekAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~~--------l~~l~~~~~~~~~A~e~~~~a  135 (338)
                      +..|+++++..|....++..++.++...|++++|+..|+++++..|.+...        ++.+....++.+.|...+...
T Consensus       127 ~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a  206 (389)
T PRK11788        127 EELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKA  206 (389)
T ss_pred             HHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999998875431        111234556777777777777


Q ss_pred             ccCCCh
Q 019586          136 VDVNPI  141 (338)
Q Consensus       136 l~~~P~  141 (338)
                      +..+|.
T Consensus       207 l~~~p~  212 (389)
T PRK11788        207 LAADPQ  212 (389)
T ss_pred             HhHCcC
Confidence            666665

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=99.05  E-value=7.1e-10  Score=82.66  Aligned_cols=66  Identities=18%  Similarity=0.238  Sum_probs=59.4

Q ss_pred             CHHHH-HHHHHHHHcCCHHHHHHHHHhhCcCCcCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC-CHHHHHHH
Q 019586           23 NNKMC-NLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQS-RLFDAFLG  100 (338)
Q Consensus        23 ~a~a~-nLG~~y~~~G~~dEAi~~~~k~~p~~~d~lg~~deAi~~yekAL~l~Pd~~~a~~nLG~~l~~lG-r~~eAi~~  100 (338)
                      ++..| ++|.++...|+|                     ++|+.+|+++++++|+++.+|+++|.++..+| ++.+|+.+
T Consensus         2 ~a~~~~~~g~~~~~~~~~---------------------~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~   60 (69)
T PF13414_consen    2 NAEAWYNLGQIYFQQGDY---------------------EEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIED   60 (69)
T ss_dssp             SHHHHHHHHHHHHHTTHH---------------------HHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCH---------------------HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHH
Confidence            45555 999999999999                     56666677799999999999999999999999 79999999


Q ss_pred             HHHHHccCC
Q 019586          101 SSSIWQPQP  109 (338)
Q Consensus       101 yekALkl~P  109 (338)
                      |+++++++|
T Consensus        61 ~~~al~l~P   69 (69)
T PF13414_consen   61 FEKALKLDP   69 (69)
T ss_dssp             HHHHHHHST
T ss_pred             HHHHHHcCc
Confidence            999999998

...

>PLN02789 farnesyltranstransferase

Probab=99.03  E-value=3.4e-09  Score=103.43  Aligned_cols=114  Identities=10%  Similarity=0.028  Sum_probs=100.1

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcC-CHHHHHHHHHhh---CcCCcC----------CCCC--HHHHH
Q 019586            2 QQNNYIEAEDAYRRALSIAPDNNKMC-NLGICLMKQG-RIGEAKETLRRV---KPAVAD----------GPRG--VDSHL   64 (338)
Q Consensus         2 q~g~~eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G-~~dEAi~~~~k~---~p~~~d----------~lg~--~deAi   64 (338)
                      ..+++++|+..+.++|+++|++..+| .+|.++..+| ++++|+..+.++   .|.+..          .+++  +++++
T Consensus        49 ~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el  128 (320)
T PLN02789         49 SDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKEL  128 (320)
T ss_pred             cCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHH
Confidence            35688999999999999999999988 9999999999 689999999984   444433          1444  37789


Q ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCcccc
Q 019586           65 KAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDHIL  115 (338)
Q Consensus        65 ~~yekAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~~l  115 (338)
                      .+++++++++|.+..+|..+|.++...|++++|+.++.++|+++|.+...+
T Consensus       129 ~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW  179 (320)
T PLN02789        129 EFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAW  179 (320)
T ss_pred             HHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHH
Confidence            999999999999999999999999999999999999999999999987733

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.00  E-value=1.7e-09  Score=110.59  Aligned_cols=134  Identities=19%  Similarity=0.145  Sum_probs=85.9

Q ss_pred             HHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcCCHHHHHHHHHh-h--CcCCc------------------C---------
Q 019586            7 IEAEDAYRRALSIAPDNNKMC-NLGICLMKQGRIGEAKETLRR-V--KPAVA------------------D---------   55 (338)
Q Consensus         7 eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k-~--~p~~~------------------d---------   55 (338)
                      ..||..++++++++|++-++. .||.+|...|.-.+|..++.+ +  .|.+.                  +         
T Consensus       336 ~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~  415 (579)
T KOG1125|consen  336 QNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQE  415 (579)
T ss_pred             HHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHH
Confidence            456666666666666666655 666667666666666666666 1  11000                  0         


Q ss_pred             --------------------------CCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCC
Q 019586           56 --------------------------GPRGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQP  109 (338)
Q Consensus        56 --------------------------~lg~~deAi~~yekAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P  109 (338)
                                                ..++|+.|++||+.||+.+|++...|+.||.++..-.+.++|+..|++||++.|
T Consensus       416 ~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP  495 (579)
T KOG1125|consen  416 LFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQP  495 (579)
T ss_pred             HHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCC
Confidence                                      034777777777777777777777777777777777777777777777777777


Q ss_pred             CCcccccch---hhhcCccHHHHHhhhhcccCCC
Q 019586          110 CKDHILPTT---NAIKTRDDFADENIDSNVDVNP  140 (338)
Q Consensus       110 ~~~~~l~~l---~~~~~~~~~A~e~~~~al~~~P  140 (338)
                      .......++   ...+|-...|...+..++...+
T Consensus       496 ~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~  529 (579)
T KOG1125|consen  496 GYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQR  529 (579)
T ss_pred             CeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhh
Confidence            766533332   3445555556555555554333

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=98.97  E-value=7.6e-09  Score=94.40  Aligned_cols=112  Identities=15%  Similarity=0.152  Sum_probs=94.8

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCCHH---H-HHHHHHHHHcCCHHHHHHHHHhh---CcCCcCC------------------
Q 019586            2 QQNNYIEAEDAYRRALSIAPDNNK---M-CNLGICLMKQGRIGEAKETLRRV---KPAVADG------------------   56 (338)
Q Consensus         2 q~g~~eeAi~~y~kALeldPd~a~---a-~nLG~~y~~~G~~dEAi~~~~k~---~p~~~d~------------------   56 (338)
                      ..|+|++|+..|++++..+|++..   + +.+|.+|..+|++++|+..|+++   .|.++..                  
T Consensus        45 ~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~g~~~~~~~~~~  124 (235)
T TIGR03302        45 DSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYYLRGLSNYNQIDRV  124 (235)
T ss_pred             HcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHHHHHHHHHhcccc
Confidence            468999999999999999998763   3 49999999999999999999994   4444431                  


Q ss_pred             ---CCCHHHHHHHHHHHHHhCCCCHHHH-----------------HHHHHHHHHCCCHHHHHHHHHHHHccCCCCcc
Q 019586           57 ---PRGVDSHLKAYERAQQMLKDLESEM-----------------MNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDH  113 (338)
Q Consensus        57 ---lg~~deAi~~yekAL~l~Pd~~~a~-----------------~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~  113 (338)
                         .+++++|+..|+++++..|+...++                 ..+|.+|..+|++.+|+..|++++...|+.+.
T Consensus       125 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~  201 (235)
T TIGR03302       125 DRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAINRFETVVENYPDTPA  201 (235)
T ss_pred             cCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcc
Confidence               1678999999999999999987543                 46788999999999999999999999888653

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.96  E-value=3e-09  Score=108.54  Aligned_cols=145  Identities=14%  Similarity=0.115  Sum_probs=119.2

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcCCHHHHHHHHHhh---CcCCcC----------------------
Q 019586            2 QQNNYIEAEDAYRRALSIAPDNNKMC-NLGICLMKQGRIGEAKETLRRV---KPAVAD----------------------   55 (338)
Q Consensus         2 q~g~~eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k~---~p~~~d----------------------   55 (338)
                      ..|++.+|..+|.+|..+||.++.+| .+|.+|...|.-++|+.+|..+   .+....                      
T Consensus       324 ~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLAe~Ff  403 (611)
T KOG1173|consen  324 MIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLAEKFF  403 (611)
T ss_pred             HhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHHHHHH
Confidence            35889999999999999999999988 9999999999999999999773   222211                      


Q ss_pred             ----------------------CCCCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHc
Q 019586           56 ----------------------GPRGVDSHLKAYERAQQML-------KDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQ  106 (338)
Q Consensus        56 ----------------------~lg~~deAi~~yekAL~l~-------Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALk  106 (338)
                                            ..+.|.+|+.+|+.++..-       +.|...+.|||.++.+++++.+|+.+|+++|.
T Consensus       404 ~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~  483 (611)
T KOG1173|consen  404 KQALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALL  483 (611)
T ss_pred             HHHHhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHH
Confidence                                  1358899999999888432       23667789999999999999999999999999


Q ss_pred             cCCCCcccccch---hhhcCccHHHHHhhhhcccCCChhhhhh
Q 019586          107 PQPCKDHILPTT---NAIKTRDDFADENIDSNVDVNPIVLSKH  146 (338)
Q Consensus       107 l~P~~~~~l~~l---~~~~~~~~~A~e~~~~al~~~P~~~~K~  146 (338)
                      +.|.++..+..+   ....|..+-|.+.+..++.++|......
T Consensus       484 l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~  526 (611)
T KOG1173|consen  484 LSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFIS  526 (611)
T ss_pred             cCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHH
Confidence            999998866554   6678888899999999999999865443

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=98.94  E-value=6.4e-09  Score=76.51  Aligned_cols=88  Identities=25%  Similarity=0.357  Sum_probs=77.1

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcCCHHHHHHHHHhhCcCCcCCCCCHHHHHHHHHHHHHhCCCCHHH
Q 019586            2 QQNNYIEAEDAYRRALSIAPDNNKMC-NLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDLESE   80 (338)
Q Consensus         2 q~g~~eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k~~p~~~d~lg~~deAi~~yekAL~l~Pd~~~a   80 (338)
                      ..|++++|+..|+++++..|++...+ .+|.++...|++                     ++|+.+|++++.+.|....+
T Consensus        12 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------~~a~~~~~~~~~~~~~~~~~   70 (100)
T cd00189          12 KLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKY---------------------EEALEDYEKALELDPDNAKA   70 (100)
T ss_pred             HHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHhCCCcchhH
Confidence            35889999999999999999887755 999999999888                     55666667788999999999


Q ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHccCCC
Q 019586           81 MMNKGGDRVEQSRLFDAFLGSSSIWQPQPC  110 (338)
Q Consensus        81 ~~nLG~~l~~lGr~~eAi~~yekALkl~P~  110 (338)
                      +..+|.++...|++++|..++.++++..|.
T Consensus        71 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~  100 (100)
T cd00189          71 YYNLGLAYYKLGKYEEALEAYEKALELDPN  100 (100)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHccCCC
Confidence            999999999999999999999999998873

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=98.93  E-value=1.9e-09  Score=101.42  Aligned_cols=128  Identities=18%  Similarity=0.146  Sum_probs=69.9

Q ss_pred             CCCHHHHHHHHHHHHHhC--CCCHHHH-HHHHHHHHcCCHHHHHHHHHh---hCcCCcC----------CCCCHHHHHHH
Q 019586            3 QNNYIEAEDAYRRALSIA--PDNNKMC-NLGICLMKQGRIGEAKETLRR---VKPAVAD----------GPRGVDSHLKA   66 (338)
Q Consensus         3 ~g~~eeAi~~y~kALeld--Pd~a~a~-nLG~~y~~~G~~dEAi~~~~k---~~p~~~d----------~lg~~deAi~~   66 (338)
                      .++++++...++++....  ++++..+ .+|.++...|++++|+..|++   ..|++++          ..|+++++...
T Consensus       123 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~  202 (280)
T PF13429_consen  123 LGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALELDPDDPDARNALAWLLIDMGDYDEAREA  202 (280)
T ss_dssp             TT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             HhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHH
Confidence            456677777777766544  3444444 677777777777777777777   3344333          25666666666


Q ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCcccc---cchhhhcCccHHHHH
Q 019586           67 YERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDHIL---PTTNAIKTRDDFADE  130 (338)
Q Consensus        67 yekAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~~l---~~l~~~~~~~~~A~e  130 (338)
                      ++...+..|+++..|..+|.++..+|++++|+.+|+++++.+|.++.++   +.+....|+.+.|..
T Consensus       203 l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~A~~  269 (280)
T PF13429_consen  203 LKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPLWLLAYADALEQAGRKDEALR  269 (280)
T ss_dssp             HHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT----------
T ss_pred             HHHHHHHCcCHHHHHHHHHHHhccccccccccccccccccccccccccccccccccccccccccccc
Confidence            6666666666666677777777777777777777777777777766522   222344454444443

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=98.92  E-value=1.4e-08  Score=81.67  Aligned_cols=91  Identities=16%  Similarity=0.176  Sum_probs=76.7

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCCH---HHH-HHHHHHHHcCCHHHHHHHHHhhCcCCcCCCCCHHHHHHHHHHHHHhCCCC
Q 019586            2 QQNNYIEAEDAYRRALSIAPDNN---KMC-NLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDL   77 (338)
Q Consensus         2 q~g~~eeAi~~y~kALeldPd~a---~a~-nLG~~y~~~G~~dEAi~~~~k~~p~~~d~lg~~deAi~~yekAL~l~Pd~   77 (338)
                      ..|++++|+..|.+++..+|++.   ..+ .+|.++...|++                     ++|+.+|++++...|+.
T Consensus        14 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---------------------~~A~~~~~~~~~~~p~~   72 (119)
T TIGR02795        14 KAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKY---------------------ADAAKAFLAVVKKYPKS   72 (119)
T ss_pred             HcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccH---------------------HHHHHHHHHHHHHCCCC
Confidence            46889999999999999888763   333 899999999988                     55566666688888875


Q ss_pred             ---HHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCcc
Q 019586           78 ---ESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDH  113 (338)
Q Consensus        78 ---~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~  113 (338)
                         +.+++.+|.++..+|++++|+.+|+++++..|++..
T Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~  111 (119)
T TIGR02795        73 PKAPDALLKLGMSLQELGDKEKAKATLQQVIKRYPGSSA  111 (119)
T ss_pred             CcccHHHHHHHHHHHHhCChHHHHHHHHHHHHHCcCChh
Confidence               688999999999999999999999999999998765

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=98.91  E-value=3.3e-09  Score=107.69  Aligned_cols=92  Identities=17%  Similarity=0.308  Sum_probs=86.2

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcCCHHHHHHHHHhhCcCCcCCCCCHHHHHHHHHHHHHhCCCCHHH
Q 019586            2 QQNNYIEAEDAYRRALSIAPDNNKMC-NLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDLESE   80 (338)
Q Consensus         2 q~g~~eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k~~p~~~d~lg~~deAi~~yekAL~l~Pd~~~a   80 (338)
                      ..|+|..|+.+|.+||..+|+++.+| |+|.||.++|.+                     ..|+...+++|+++|++..+
T Consensus       370 k~gdy~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~---------------------~~aL~Da~~~ieL~p~~~kg  428 (539)
T KOG0548|consen  370 KKGDYPEAVKHYTEAIKRDPEDARLYSNRAACYLKLGEY---------------------PEALKDAKKCIELDPNFIKA  428 (539)
T ss_pred             hccCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhH---------------------HHHHHHHHHHHhcCchHHHH
Confidence            56899999999999999999999977 999999999999                     66777788899999999999


Q ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHccCCCCccc
Q 019586           81 MMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDHI  114 (338)
Q Consensus        81 ~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~~  114 (338)
                      |.+.|.++..+.+|++|..+|+++++++|.+.++
T Consensus       429 y~RKg~al~~mk~ydkAleay~eale~dp~~~e~  462 (539)
T KOG0548|consen  429 YLRKGAALRAMKEYDKALEAYQEALELDPSNAEA  462 (539)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHH
Confidence            9999999999999999999999999999998873

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=98.91  E-value=1.1e-08  Score=109.92  Aligned_cols=138  Identities=9%  Similarity=0.004  Sum_probs=68.0

Q ss_pred             CCHHHHHHHHHHHHHhCCCCHH--HHHHHHHHHHcCCHHHHHHHHHhhCcCCc---C--------------CCCCHHHHH
Q 019586            4 NNYIEAEDAYRRALSIAPDNNK--MCNLGICLMKQGRIGEAKETLRRVKPAVA---D--------------GPRGVDSHL   64 (338)
Q Consensus         4 g~~eeAi~~y~kALeldPd~a~--a~nLG~~y~~~G~~dEAi~~~~k~~p~~~---d--------------~lg~~deAi   64 (338)
                      |++++|+..|+++++..|..+.  ...+|.+|..+|++++|+..|+++....+   .              ..+++++|+
T Consensus       251 g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~  330 (765)
T PRK10049        251 DRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGAL  330 (765)
T ss_pred             hhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHH
Confidence            4555555555555555432222  11245555555555555555555321111   0              135555555


Q ss_pred             HHHHHHHHhCCC---------------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCcccc---cchhhhcCccH
Q 019586           65 KAYERAQQMLKD---------------LESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDHIL---PTTNAIKTRDD  126 (338)
Q Consensus        65 ~~yekAL~l~Pd---------------~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~~l---~~l~~~~~~~~  126 (338)
                      ..+++++...|.               ...++..+|.++...|++++|+.++++++...|.+..++   +.+....++.+
T Consensus       331 ~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~  410 (765)
T PRK10049        331 TVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARGWPR  410 (765)
T ss_pred             HHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHH
Confidence            555555555441               123445555555555555555555555555555554422   22233445555


Q ss_pred             HHHHhhhhcccCCCh
Q 019586          127 FADENIDSNVDVNPI  141 (338)
Q Consensus       127 ~A~e~~~~al~~~P~  141 (338)
                      .|...+..++..+|.
T Consensus       411 ~A~~~l~~al~l~Pd  425 (765)
T PRK10049        411 AAENELKKAEVLEPR  425 (765)
T ss_pred             HHHHHHHHHHhhCCC
Confidence            555555555555555

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.90  E-value=1.2e-08  Score=102.51  Aligned_cols=110  Identities=15%  Similarity=0.077  Sum_probs=97.7

Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcCCHHHHHHHHHhh---CcCCcCC----------CCCHHHHHHHHHH
Q 019586            4 NNYIEAEDAYRRALSIAPDNNKMC-NLGICLMKQGRIGEAKETLRRV---KPAVADG----------PRGVDSHLKAYER   69 (338)
Q Consensus         4 g~~eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k~---~p~~~d~----------lg~~deAi~~yek   69 (338)
                      ++++.|+.+|++|+++||....+| -+|.=|+.+.+...|+..|+++   +|.+..+          ++-+.=|+-+|++
T Consensus       344 ~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqk  423 (559)
T KOG1155|consen  344 SEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQK  423 (559)
T ss_pred             HhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHH
Confidence            578999999999999999999999 9999999999999999999994   4443322          5577778999999


Q ss_pred             HHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCcc
Q 019586           70 AQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDH  113 (338)
Q Consensus        70 AL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~  113 (338)
                      |+++.|+++..|..||.+|.++++.++|+.||.+++...-.+..
T Consensus       424 A~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~  467 (559)
T KOG1155|consen  424 ALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGS  467 (559)
T ss_pred             HHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchH
Confidence            99999999999999999999999999999999999988766444

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=98.89  E-value=1.8e-08  Score=108.34  Aligned_cols=137  Identities=11%  Similarity=0.038  Sum_probs=114.8

Q ss_pred             CCCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcCCHHHHHHHHHh---hCcCCcC----------CCCCHHHHHHHHH
Q 019586            3 QNNYIEAEDAYRRALSIAPDNNKMC-NLGICLMKQGRIGEAKETLRR---VKPAVAD----------GPRGVDSHLKAYE   68 (338)
Q Consensus         3 ~g~~eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k---~~p~~~d----------~lg~~deAi~~ye   68 (338)
                      .|++++|+..|.+++.++|..+..+ ++|.++..+|++++|+..|++   +.|.+++          ..|++++|+..++
T Consensus        28 ~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~eA~~~l~  107 (765)
T PRK10049         28 AGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYDEALVKAK  107 (765)
T ss_pred             cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence            6899999999999999999999877 999999999999999999999   4555554          2789999999999


Q ss_pred             HHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCccccc---chhhhcCccHHHHHhhhhcccCCCh
Q 019586           69 RAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDHILP---TTNAIKTRDDFADENIDSNVDVNPI  141 (338)
Q Consensus        69 kAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~~l~---~l~~~~~~~~~A~e~~~~al~~~P~  141 (338)
                      ++++..|+++. ++.+|.++...|++++|+.+|++++++.|++...+.   .+....+..+.|...+..... +|.
T Consensus       108 ~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~-~p~  181 (765)
T PRK10049        108 QLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPALGAIDDANL-TPA  181 (765)
T ss_pred             HHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHhCCC-CHH
Confidence            99999999999 999999999999999999999999999999987332   223344555556655555443 443

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.89  E-value=1.3e-08  Score=102.70  Aligned_cols=149  Identities=11%  Similarity=0.170  Sum_probs=122.3

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcCCHHHHHHHHHhhCcCCcC-------------CCCCHHHHHHHH
Q 019586            2 QQNNYIEAEDAYRRALSIAPDNNKMC-NLGICLMKQGRIGEAKETLRRVKPAVAD-------------GPRGVDSHLKAY   67 (338)
Q Consensus         2 q~g~~eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k~~p~~~d-------------~lg~~deAi~~y   67 (338)
                      ++.+-++-...|.+|..+||.+++.| ++|.++.-+++|++|+..|+++...+|+             .++++++++..|
T Consensus       372 d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~F  451 (606)
T KOG0547|consen  372 DENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTF  451 (606)
T ss_pred             hhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45677888999999999999999955 9999999999999999999995555554             267999999999


Q ss_pred             HHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCcccc--------cchhhhcCccHH--HHHhhhhccc
Q 019586           68 ERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDHIL--------PTTNAIKTRDDF--ADENIDSNVD  137 (338)
Q Consensus        68 ekAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~~l--------~~l~~~~~~~~~--A~e~~~~al~  137 (338)
                      +.+++--|+.+++|...|.++..+++|+.|+..|.+|+.+.|....++        ..+...+|..++  +...+..++.
T Consensus       452 ee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e  531 (606)
T KOG0547|consen  452 EEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQWKEDINQAENLLRKAIE  531 (606)
T ss_pred             HHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhhchhhhHHHHHHHHHHHHc
Confidence            999999999999999999999999999999999999999999833311        112223344444  5778888999


Q ss_pred             CCChhhhhhhhhh
Q 019586          138 VNPIVLSKHRSVK  150 (338)
Q Consensus       138 ~~P~~~~K~~~~~  150 (338)
                      ++|..-.....+.
T Consensus       532 ~Dpkce~A~~tla  544 (606)
T KOG0547|consen  532 LDPKCEQAYETLA  544 (606)
T ss_pred             cCchHHHHHHHHH
Confidence            9998655444443

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=98.87  E-value=4e-09  Score=82.13  Aligned_cols=81  Identities=17%  Similarity=0.277  Sum_probs=66.8

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCC--HH-HHHHHHHHHHcCCHHHHHHHHHhhCcCCcCCCCCHHHHHHHHHHHHHhCCCCH
Q 019586            2 QQNNYIEAEDAYRRALSIAPDN--NK-MCNLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDLE   78 (338)
Q Consensus         2 q~g~~eeAi~~y~kALeldPd~--a~-a~nLG~~y~~~G~~dEAi~~~~k~~p~~~d~lg~~deAi~~yekAL~l~Pd~~   78 (338)
                      ++|+|++|+.+|+++++.+|.+  .. ++++|.||..+|+|                     ++|+..+++ +..++.+.
T Consensus         1 ~~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y---------------------~~A~~~~~~-~~~~~~~~   58 (84)
T PF12895_consen    1 DQGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKY---------------------EEAIELLQK-LKLDPSNP   58 (84)
T ss_dssp             HTT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHH---------------------HHHHHHHHC-HTHHHCHH
T ss_pred             CCccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCH---------------------HHHHHHHHH-hCCCCCCH
Confidence            3689999999999999999964  22 33899999999999                     455555666 66778888


Q ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHH
Q 019586           79 SEMMNKGGDRVEQSRLFDAFLGSSSI  104 (338)
Q Consensus        79 ~a~~nLG~~l~~lGr~~eAi~~yekA  104 (338)
                      ..++.+|.++.++|++++|+.+|+++
T Consensus        59 ~~~~l~a~~~~~l~~y~eAi~~l~~~   84 (84)
T PF12895_consen   59 DIHYLLARCLLKLGKYEEAIKALEKA   84 (84)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHhcC
Confidence            99999999999999999999999875

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=98.86  E-value=6.3e-09  Score=76.83  Aligned_cols=64  Identities=22%  Similarity=0.177  Sum_probs=55.6

Q ss_pred             HHHHHHHHcCCHHHHHHHHHhhCcCCcCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcc
Q 019586           28 NLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQP  107 (338)
Q Consensus        28 nLG~~y~~~G~~dEAi~~~~k~~p~~~d~lg~~deAi~~yekAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl  107 (338)
                      .+|..+...|+|                     ++|+..|+++++..|+++.+|+.+|.++..+|++++|+..|++++++
T Consensus         2 ~~a~~~~~~g~~---------------------~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~   60 (65)
T PF13432_consen    2 ALARALYQQGDY---------------------DEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALEL   60 (65)
T ss_dssp             HHHHHHHHCTHH---------------------HHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             hHHHHHHHcCCH---------------------HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            567788888888                     66677777799999999999999999999999999999999999999


Q ss_pred             CCCCc
Q 019586          108 QPCKD  112 (338)
Q Consensus       108 ~P~~~  112 (338)
                      +|+++
T Consensus        61 ~P~~p   65 (65)
T PF13432_consen   61 DPDNP   65 (65)
T ss_dssp             STT-H
T ss_pred             CcCCC
Confidence            99874

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=98.82  E-value=4.6e-08  Score=104.34  Aligned_cols=122  Identities=11%  Similarity=0.010  Sum_probs=104.8

Q ss_pred             hCCCCHHHH-HHHHHHHHcCCHHHHHHHHHhhCcCCcC-------------CCCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 019586           19 IAPDNNKMC-NLGICLMKQGRIGEAKETLRRVKPAVAD-------------GPRGVDSHLKAYERAQQMLKDLESEMMNK   84 (338)
Q Consensus        19 ldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k~~p~~~d-------------~lg~~deAi~~yekAL~l~Pd~~~a~~nL   84 (338)
                      ..|++.+++ +||.+...+|++++|...++++....|+             .++++++|+..+++++..+|+++.+++.+
T Consensus        81 ~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~  160 (694)
T PRK15179         81 RYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLE  160 (694)
T ss_pred             hccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHH
Confidence            367778877 9999999999999999999996555555             27899999999999999999999999999


Q ss_pred             HHHHHHCCCHHHHHHHHHHHHccCCCCcccc---cchhhhcCccHHHHHhhhhcccCCC
Q 019586           85 GGDRVEQSRLFDAFLGSSSIWQPQPCKDHIL---PTTNAIKTRDDFADENIDSNVDVNP  140 (338)
Q Consensus        85 G~~l~~lGr~~eAi~~yekALkl~P~~~~~l---~~l~~~~~~~~~A~e~~~~al~~~P  140 (338)
                      |.++.++|++++|+.+|++++..+|+++..+   +.+....|+.+.|...+..++...-
T Consensus       161 a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~  219 (694)
T PRK15179        161 AKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIG  219 (694)
T ss_pred             HHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhC
Confidence            9999999999999999999999999877733   3335677888888888888775443

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=98.81  E-value=3.5e-08  Score=86.86  Aligned_cols=85  Identities=16%  Similarity=0.072  Sum_probs=62.7

Q ss_pred             HHHHHHHHcCCHHHHHHHHHhhC---cCCcC-------------CCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC
Q 019586           28 NLGICLMKQGRIGEAKETLRRVK---PAVAD-------------GPRGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQ   91 (338)
Q Consensus        28 nLG~~y~~~G~~dEAi~~~~k~~---p~~~d-------------~lg~~deAi~~yekAL~l~Pd~~~a~~nLG~~l~~l   91 (338)
                      ++|.+|...|++++|+.+|+++.   +..++             ..|++++|+.+|++++++.|++..++..+|.++..+
T Consensus        40 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~  119 (172)
T PRK02603         40 RDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVIYHKR  119 (172)
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHc
Confidence            66666666677766666666632   22211             156668888888889999999999999999999998


Q ss_pred             CC--------------HHHHHHHHHHHHccCCCCc
Q 019586           92 SR--------------LFDAFLGSSSIWQPQPCKD  112 (338)
Q Consensus        92 Gr--------------~~eAi~~yekALkl~P~~~  112 (338)
                      |+              +.+|+.+++++++++|++.
T Consensus       120 g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~~~  154 (172)
T PRK02603        120 GEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPNNY  154 (172)
T ss_pred             CChHhHhhCHHHHHHHHHHHHHHHHHHHhhCchhH
Confidence            88              5777777888888887764

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.81  E-value=5e-09  Score=107.09  Aligned_cols=107  Identities=14%  Similarity=0.106  Sum_probs=89.3

Q ss_pred             HHHHHHHHHHHHhCC--CCHHHH-HHHHHHHHcCCHHHHHHHHHhhCcCCcC---C----------CCCHHHHHHHHHHH
Q 019586            7 IEAEDAYRRALSIAP--DNNKMC-NLGICLMKQGRIGEAKETLRRVKPAVAD---G----------PRGVDSHLKAYERA   70 (338)
Q Consensus         7 eeAi~~y~kALeldP--d~a~a~-nLG~~y~~~G~~dEAi~~~~k~~p~~~d---~----------lg~~deAi~~yekA   70 (338)
                      ..-.++|-.|....|  .+++.+ .||.+|...|+|+.|+.+|+.++...|.   .          -.+.++|+.+|.||
T Consensus       411 ~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rA  490 (579)
T KOG1125|consen  411 AHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRA  490 (579)
T ss_pred             HHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHH
Confidence            344567777777777  577766 8999999999999999999885444443   1          23889999999999


Q ss_pred             HHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCcc
Q 019586           71 QQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDH  113 (338)
Q Consensus        71 L~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~  113 (338)
                      +++.|.+..++||||.+++.+|.|.||+.+|-.||.+.+....
T Consensus       491 LqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~ks~~  533 (579)
T KOG1125|consen  491 LQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQRKSRN  533 (579)
T ss_pred             HhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhcccc
Confidence            9999999999999999999999999999999999999987543

>PRK14574 hmsH outer membrane protein; Provisional

Probab=98.80  E-value=5.6e-08  Score=105.43  Aligned_cols=143  Identities=10%  Similarity=0.036  Sum_probs=116.9

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHcCCHHHHHHHHHhhC-cCCcC------------CCCCHHHHHHHH
Q 019586            2 QQNNYIEAEDAYRRALSIAPDNN-KMCNLGICLMKQGRIGEAKETLRRVK-PAVAD------------GPRGVDSHLKAY   67 (338)
Q Consensus         2 q~g~~eeAi~~y~kALeldPd~a-~a~nLG~~y~~~G~~dEAi~~~~k~~-p~~~d------------~lg~~deAi~~y   67 (338)
                      ++|++++|+..|+++++.+|.+. ..+.+..++...|++++|+.+++++. |....            ..|++++|+..|
T Consensus        46 r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd~Aiely  125 (822)
T PRK14574         46 RAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWDQALALW  125 (822)
T ss_pred             hCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            68999999999999999999995 44588888889999999999999955 22222            269999999999


Q ss_pred             HHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCcccccch--hhhcCccHHHHHhhhhcccCCChhhh
Q 019586           68 ERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDHILPTT--NAIKTRDDFADENIDSNVDVNPIVLS  144 (338)
Q Consensus        68 ekAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~~l~~l--~~~~~~~~~A~e~~~~al~~~P~~~~  144 (338)
                      +++++.+|+++.++..++.++...++.++|+..++++++.+|.+...+...  .........+.+.+...+..+|....
T Consensus       126 ~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~~P~n~e  204 (822)
T PRK14574        126 QSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNYMTLSYLNRATDRNYDALQASSEAVRLAPTSEE  204 (822)
T ss_pred             HHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHHHHHHHHHHhcchHHHHHHHHHHHHHhCCCCHH
Confidence            999999999999999999999999999999999999999999865532221  22234443477888888888886443

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=98.80  E-value=4.6e-08  Score=101.19  Aligned_cols=109  Identities=12%  Similarity=0.041  Sum_probs=89.7

Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcC--------CHHHHHHHHHh--h---CcCCcC----------CCCC
Q 019586            4 NNYIEAEDAYRRALSIAPDNNKMC-NLGICLMKQG--------RIGEAKETLRR--V---KPAVAD----------GPRG   59 (338)
Q Consensus         4 g~~eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G--------~~dEAi~~~~k--~---~p~~~d----------~lg~   59 (338)
                      +.+..|+.+|++|++++|+++.+| .++.+|....        ++..+....++  .   .+..+.          ..|+
T Consensus       356 ~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~  435 (517)
T PRK10153        356 KSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPELNVLPRIYEILAVQALVKGK  435 (517)
T ss_pred             HHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccCcCChHHHHHHHHHHHhcCC
Confidence            457899999999999999999988 7777775542        34455555555  2   222222          2789


Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCcc
Q 019586           60 VDSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDH  113 (338)
Q Consensus        60 ~deAi~~yekAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~  113 (338)
                      +++|...|++|++++|+ ..+|..+|.++...|++++|+.+|++|+.++|.++.
T Consensus       436 ~~~A~~~l~rAl~L~ps-~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt  488 (517)
T PRK10153        436 TDEAYQAINKAIDLEMS-WLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENT  488 (517)
T ss_pred             HHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch
Confidence            99999999999999995 789999999999999999999999999999999876

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=98.80  E-value=7.6e-08  Score=92.53  Aligned_cols=139  Identities=14%  Similarity=0.039  Sum_probs=106.6

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHc----CCHHHHHHHHHhhCcCCcC-------------CCCCHHHHH
Q 019586            2 QQNNYIEAEDAYRRALSIAPDNNKMCNLGICLMKQ----GRIGEAKETLRRVKPAVAD-------------GPRGVDSHL   64 (338)
Q Consensus         2 q~g~~eeAi~~y~kALeldPd~a~a~nLG~~y~~~----G~~dEAi~~~~k~~p~~~d-------------~lg~~deAi   64 (338)
                      ..|++++|+..++++++.+|++...+..+..+...    ++...+...+....+.++.             ..|++++|+
T Consensus        55 ~~g~~~~A~~~~~~~l~~~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~  134 (355)
T cd05804          55 IAGDLPKALALLEQLLDDYPRDLLALKLHLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAE  134 (355)
T ss_pred             HcCCHHHHHHHHHHHHHHCCCcHHHHHHhHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHH
Confidence            46899999999999999999998766325455444    4445555555444455554             278999999


Q ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCccc-------ccchhhhcCccHHHHHhhhhccc
Q 019586           65 KAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDHI-------LPTTNAIKTRDDFADENIDSNVD  137 (338)
Q Consensus        65 ~~yekAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~~-------l~~l~~~~~~~~~A~e~~~~al~  137 (338)
                      ..+++++++.|+++.++..+|.++...|++++|+.++++++...|.++..       ++.+....|+.+.+...+...+.
T Consensus       135 ~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~  214 (355)
T cd05804         135 EAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIA  214 (355)
T ss_pred             HHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence            99999999999999999999999999999999999999999998864432       23345677878888777777654


Q ss_pred             CCC
Q 019586          138 VNP  140 (338)
Q Consensus       138 ~~P  140 (338)
                      ..|
T Consensus       215 ~~~  217 (355)
T cd05804         215 PSA  217 (355)
T ss_pred             ccc
Confidence            444

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=98.78  E-value=5.5e-08  Score=88.71  Aligned_cols=108  Identities=16%  Similarity=0.127  Sum_probs=91.5

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCCHH----HHHHHHHHHHc--------CCHHHHHHHHHhhC---cCCcC-----------
Q 019586            2 QQNNYIEAEDAYRRALSIAPDNNK----MCNLGICLMKQ--------GRIGEAKETLRRVK---PAVAD-----------   55 (338)
Q Consensus         2 q~g~~eeAi~~y~kALeldPd~a~----a~nLG~~y~~~--------G~~dEAi~~~~k~~---p~~~d-----------   55 (338)
                      +.|++++|+..|+++++..|++..    .+.+|.++...        |++++|+..|+++.   |....           
T Consensus        82 ~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~  161 (235)
T TIGR03302        82 KSGDYAEAIAAADRFIRLHPNHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYL  161 (235)
T ss_pred             hcCCHHHHHHHHHHHHHHCcCCCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHH
Confidence            578999999999999999998776    34999999876        88999999999943   44322           


Q ss_pred             ----------------CCCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCC
Q 019586           56 ----------------GPRGVDSHLKAYERAQQMLKD---LESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQP  109 (338)
Q Consensus        56 ----------------~lg~~deAi~~yekAL~l~Pd---~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P  109 (338)
                                      ..|++.+|+..|+++++..|+   .+.+++++|.++..+|++++|..+++......|
T Consensus       162 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~  234 (235)
T TIGR03302       162 RNRLAGKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP  234 (235)
T ss_pred             HHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence                            148999999999999999765   468999999999999999999999887765544

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=98.78  E-value=1.4e-08  Score=95.67  Aligned_cols=140  Identities=19%  Similarity=0.155  Sum_probs=73.9

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHcCCHHHHHHHHHhhC--cCCcC-------------CCCCHHHHHHH
Q 019586            2 QQNNYIEAEDAYRRALSIAPDNNKMCNLGICLMKQGRIGEAKETLRRVK--PAVAD-------------GPRGVDSHLKA   66 (338)
Q Consensus         2 q~g~~eeAi~~y~kALeldPd~a~a~nLG~~y~~~G~~dEAi~~~~k~~--p~~~d-------------~lg~~deAi~~   66 (338)
                      ..+++++|+..++++.+..++......+..++...++++++...++++.  +..+.             ..|++++|+.+
T Consensus        89 ~~~~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~  168 (280)
T PF13429_consen   89 QDGDPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRD  168 (280)
T ss_dssp             -----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHH
T ss_pred             ccccccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence            3567788888888777765432223366667778888888888877732  21111             26788888888


Q ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCccc---ccchhhhcCccHHHHHhhhhcccCCCh
Q 019586           67 YERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDHI---LPTTNAIKTRDDFADENIDSNVDVNPI  141 (338)
Q Consensus        67 yekAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~~---l~~l~~~~~~~~~A~e~~~~al~~~P~  141 (338)
                      |++|++++|+++.++..++.++...|++++|...+....+..|.++.+   ++......++.+.|...+...+..+|.
T Consensus       169 ~~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~  246 (280)
T PF13429_consen  169 YRKALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPD  246 (280)
T ss_dssp             HHHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccccccccccc
Confidence            888888888888888888888888888888777777666666666653   233355667777777777777776665

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=98.77  E-value=8.7e-08  Score=83.84  Aligned_cols=86  Identities=16%  Similarity=-0.015  Sum_probs=59.6

Q ss_pred             HHHHHHHHcCCHHHHHHHHHhh---CcCCcC-------------CCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH--
Q 019586           28 NLGICLMKQGRIGEAKETLRRV---KPAVAD-------------GPRGVDSHLKAYERAQQMLKDLESEMMNKGGDRV--   89 (338)
Q Consensus        28 nLG~~y~~~G~~dEAi~~~~k~---~p~~~d-------------~lg~~deAi~~yekAL~l~Pd~~~a~~nLG~~l~--   89 (338)
                      ++|.++..+|++++|+..|+++   .++...             ..|++++|+.+|++|+++.|.....+.++|.++.  
T Consensus        40 ~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~i~~~~  119 (168)
T CHL00033         40 RDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAVICHYR  119 (168)
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHh
Confidence            5555555555555555555553   121111             1455678888888899999999999999999999  


Q ss_pred             -----HCCCHH-------HHHHHHHHHHccCCCCcc
Q 019586           90 -----EQSRLF-------DAFLGSSSIWQPQPCKDH  113 (338)
Q Consensus        90 -----~lGr~~-------eAi~~yekALkl~P~~~~  113 (338)
                           .+|++.       +|+.+|++++..+|.+..
T Consensus       120 ~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~~~  155 (168)
T CHL00033        120 GEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGNYI  155 (168)
T ss_pred             hHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcccHH
Confidence                 777766       666677778888886543

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=98.70  E-value=9e-08  Score=87.05  Aligned_cols=143  Identities=10%  Similarity=0.054  Sum_probs=104.8

Q ss_pred             HHHHHHcCCHHHHHHHHHhh-CcCCc-CCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcc
Q 019586           30 GICLMKQGRIGEAKETLRRV-KPAVA-DGPRGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQP  107 (338)
Q Consensus        30 G~~y~~~G~~dEAi~~~~k~-~p~~~-d~lg~~deAi~~yekAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl  107 (338)
                      +..|...|+|.......++. .+..+ ...++.++++..|+++++.+|+++++|+.||.+|...|++++|+.+|++++++
T Consensus        23 ~~~Y~~~g~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l  102 (198)
T PRK10370         23 VGSYLLSPKWQAVRAEYQRLADPLHQFASQQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQL  102 (198)
T ss_pred             HHHHHHcchHHHHHHHHHHHhCccccccCchhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence            44688999999887776653 33321 13678899999999999999999999999999999999999999999999999


Q ss_pred             CCCCcccccchh----hhcCc--cHHHHHhhhhcccCCChhhhhhhhhhhhcchHHHHHHhHhHHHHhhchhhhhhHhhh
Q 019586          108 QPCKDHILPTTN----AIKTR--DDFADENIDSNVDVNPIVLSKHRSVKKLFPTANAIKTQENFADENINANIVVNQTVL  181 (338)
Q Consensus       108 ~P~~~~~l~~l~----~~~~~--~~~A~e~~~~al~~~P~~~~K~~~~~kl~~~~~ai~~~~~~~e~y~nlg~~~~~~~~  181 (338)
                      +|+++.++..+.    ...++  ...+.+.+..                       ++...|+..+++.++|.    .++
T Consensus       103 ~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~-----------------------al~~dP~~~~al~~LA~----~~~  155 (198)
T PRK10370        103 RGENAELYAALATVLYYQAGQHMTPQTREMIDK-----------------------ALALDANEVTALMLLAS----DAF  155 (198)
T ss_pred             CCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHH-----------------------HHHhCCCChhHHHHHHH----HHH
Confidence            999988543321    12232  2444444444                       45555666677777777    556


Q ss_pred             hhhhhhhhhccccccCCC
Q 019586          182 AQQRGVQQLAPFGNSWNI  199 (338)
Q Consensus       182 ~d~r~~~~~~~~~~~~~~  199 (338)
                      ...++.+++..+...+.+
T Consensus       156 ~~g~~~~Ai~~~~~aL~l  173 (198)
T PRK10370        156 MQADYAQAIELWQKVLDL  173 (198)
T ss_pred             HcCCHHHHHHHHHHHHhh
Confidence            667777776665555544

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.70  E-value=5.4e-08  Score=99.53  Aligned_cols=113  Identities=19%  Similarity=0.123  Sum_probs=100.5

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcCCHHHHHHHHHhhC-------cCCc-C------------CCCC
Q 019586            1 MQQNNYIEAEDAYRRALSIAPDNNKMC-NLGICLMKQGRIGEAKETLRRVK-------PAVA-D------------GPRG   59 (338)
Q Consensus         1 mq~g~~eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k~~-------p~~~-d------------~lg~   59 (338)
                      |+.++++-|..+|.+|+.+.|.++-.. .+|.+....+.|.+|+.+|+.+.       +.-+ +            .++.
T Consensus       391 ~~t~n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~  470 (611)
T KOG1173|consen  391 MRTNNLKLAEKFFKQALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNK  470 (611)
T ss_pred             HHhccHHHHHHHHHHHHhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhh
Confidence            356789999999999999999999855 99999999999999999999933       1111 1            2679


Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCcc
Q 019586           60 VDSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDH  113 (338)
Q Consensus        60 ~deAi~~yekAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~  113 (338)
                      +++|+.+|+++|.+.|.++.+|..+|.+|..+|+++.|+++|.++|.++|++.-
T Consensus       471 ~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~  524 (611)
T KOG1173|consen  471 YEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIF  524 (611)
T ss_pred             HHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHH
Confidence            999999999999999999999999999999999999999999999999999854

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.65  E-value=3.9e-07  Score=91.73  Aligned_cols=146  Identities=12%  Similarity=0.061  Sum_probs=102.1

Q ss_pred             CHHHHHHHHHHHHHh-CCCCHHHH-HHHHHHHHcCCHHHHHHHHHhhCcCCcC---------------------------
Q 019586            5 NYIEAEDAYRRALSI-APDNNKMC-NLGICLMKQGRIGEAKETLRRVKPAVAD---------------------------   55 (338)
Q Consensus         5 ~~eeAi~~y~kALel-dPd~a~a~-nLG~~y~~~G~~dEAi~~~~k~~p~~~d---------------------------   55 (338)
                      ..++++.-+++.+.+ -|.+.-.- ..|.++..+.++++|+..|+.+..++|-                           
T Consensus       242 q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA~~  321 (559)
T KOG1155|consen  242 QHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLAQN  321 (559)
T ss_pred             HHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHHHH
Confidence            356667667776666 34333322 6777777777788888877775444432                           


Q ss_pred             --------------------CCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCcccc
Q 019586           56 --------------------GPRGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDHIL  115 (338)
Q Consensus        56 --------------------~lg~~deAi~~yekAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~~l  115 (338)
                                          ..+++++|+.+|++|++++|....+|.-+|.-|.++++...|+.+|++|++++|.+-..+
T Consensus       322 v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAW  401 (559)
T KOG1155|consen  322 VSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAW  401 (559)
T ss_pred             HHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHH
Confidence                                145888899999999999999899999899999999999999999999999998876633


Q ss_pred             ---cchhhhcCccHHHHHhhhhcccCCChhhhhhhhhh
Q 019586          116 ---PTTNAIKTRDDFADENIDSNVDVNPIVLSKHRSVK  150 (338)
Q Consensus       116 ---~~l~~~~~~~~~A~e~~~~al~~~P~~~~K~~~~~  150 (338)
                         ++..........+.-.++.+....|...--...+.
T Consensus       402 YGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG  439 (559)
T KOG1155|consen  402 YGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALG  439 (559)
T ss_pred             hhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHH
Confidence               22244555566677777777777776444333333

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=98.64  E-value=4e-07  Score=87.32  Aligned_cols=109  Identities=14%  Similarity=0.041  Sum_probs=99.2

Q ss_pred             CHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcCCHHHHHHHHHh---hCcCCcCC-------------CCCHHHHHHHH
Q 019586            5 NYIEAEDAYRRALSIAPDNNKMC-NLGICLMKQGRIGEAKETLRR---VKPAVADG-------------PRGVDSHLKAY   67 (338)
Q Consensus         5 ~~eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k---~~p~~~d~-------------lg~~deAi~~y   67 (338)
                      ..++-+.-.+.-+..+|++.+-| -||.+|+.+|+++.|...|++   +.|++++.             .....++...|
T Consensus       137 ~~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll  216 (287)
T COG4235         137 EMEALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALL  216 (287)
T ss_pred             cHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHH
Confidence            46778888999999999999977 999999999999999999999   66777762             44778899999


Q ss_pred             HHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCcc
Q 019586           68 ERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDH  113 (338)
Q Consensus        68 ekAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~  113 (338)
                      +++++++|.+..+.+.||..++++|+|.+|+..|+..+...|.+..
T Consensus       217 ~~al~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~  262 (287)
T COG4235         217 RQALALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADDP  262 (287)
T ss_pred             HHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCCc
Confidence            9999999999999999999999999999999999999999998776

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=98.63  E-value=2e-07  Score=87.79  Aligned_cols=91  Identities=24%  Similarity=0.254  Sum_probs=75.5

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcCCHHHHHHHHHhhCcCCcCCCCCHHHHHHHHHHHHHhCCCCHHH
Q 019586            2 QQNNYIEAEDAYRRALSIAPDNNKMC-NLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDLESE   80 (338)
Q Consensus         2 q~g~~eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k~~p~~~d~lg~~deAi~~yekAL~l~Pd~~~a   80 (338)
                      +.|+|.+|+..+++|..+.|+++++| .+|.+|.+.|++                     ++|...|.+|+++.|+.+.+
T Consensus       112 ~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~Gr~---------------------~~Ar~ay~qAl~L~~~~p~~  170 (257)
T COG5010         112 RNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLGRF---------------------DEARRAYRQALELAPNEPSI  170 (257)
T ss_pred             HhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHccCh---------------------hHHHHHHHHHHHhccCCchh
Confidence            45777777777777777777777777 777777777777                     66666777799999999999


Q ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHccCCCCcc
Q 019586           81 MMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDH  113 (338)
Q Consensus        81 ~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~  113 (338)
                      ++|+|..|.-.|+++.|...+.++...-+.+..
T Consensus       171 ~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~  203 (257)
T COG5010         171 ANNLGMSLLLRGDLEDAETLLLPAYLSPAADSR  203 (257)
T ss_pred             hhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchH
Confidence            999999999999999999999998877766655

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.60  E-value=1.4e-07  Score=90.45  Aligned_cols=144  Identities=13%  Similarity=0.043  Sum_probs=104.3

Q ss_pred             HHHHHHHHHHHHHhCCCCHHHH---HHHHHHHHcCC------HH-HHHHHHHhhC--cCCcCCCCCHHHHHHHHHHHHHh
Q 019586            6 YIEAEDAYRRALSIAPDNNKMC---NLGICLMKQGR------IG-EAKETLRRVK--PAVADGPRGVDSHLKAYERAQQM   73 (338)
Q Consensus         6 ~eeAi~~y~kALeldPd~a~a~---nLG~~y~~~G~------~d-EAi~~~~k~~--p~~~d~lg~~deAi~~yekAL~l   73 (338)
                      .+-|+.+++.++.+.++.....   .+-.++....+      .. +....-+++.  -+..-.-++|.+|+..|.+||++
T Consensus        31 leva~qc~e~~f~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~e~~~~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l  110 (304)
T KOG0553|consen   31 LEVAIQCLEAAFGFRRDDVDRAEGTTLLDSFESAERHPVEILTPEEDKALAESLKNEGNKLMKNKDYQEAVDKYTEAIEL  110 (304)
T ss_pred             HHHhHHHHHHHhCcchhhccccccccHHHHHHHhccCcccccChHhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence            4668888888888877655422   22223322222      11 1222222211  11111356899999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCcccccch---hhhcCccHHHHHhhhhcccCCChhhhhhhhh
Q 019586           74 LKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDHILPTT---NAIKTRDDFADENIDSNVDVNPIVLSKHRSV  149 (338)
Q Consensus        74 ~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~~l~~l---~~~~~~~~~A~e~~~~al~~~P~~~~K~~~~  149 (338)
                      +|.++..|-|++.+|.++|.++.|+..++++|.+||.....+..+   ...+++...|.+.+..++.++|..-.-+..+
T Consensus       111 ~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A~~aykKaLeldP~Ne~~K~nL  189 (304)
T KOG0553|consen  111 DPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEAIEAYKKALELDPDNESYKSNL  189 (304)
T ss_pred             CCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHHHHHHHhhhccCCCcHHHHHHH
Confidence            999999999999999999999999999999999999988865554   6678888889999999999999866544333

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=98.59  E-value=5.3e-07  Score=89.92  Aligned_cols=47  Identities=15%  Similarity=0.215  Sum_probs=41.9

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcCCHHHHHHHHHh
Q 019586            2 QQNNYIEAEDAYRRALSIAPDNNKMC-NLGICLMKQGRIGEAKETLRR   48 (338)
Q Consensus         2 q~g~~eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k   48 (338)
                      +.|++++|+..++++++.+|++..++ -++.+|...|+|++|+..+.+
T Consensus       165 ~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~  212 (398)
T PRK10747        165 ARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPS  212 (398)
T ss_pred             HCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence            47899999999999999999999977 999999999999999966555

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=98.58  E-value=4.9e-07  Score=96.48  Aligned_cols=108  Identities=18%  Similarity=0.135  Sum_probs=100.7

Q ss_pred             CCCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcCCHHHHHHHHHh---hCcCCcC----------CCCCHHHHHHHHH
Q 019586            3 QNNYIEAEDAYRRALSIAPDNNKMC-NLGICLMKQGRIGEAKETLRR---VKPAVAD----------GPRGVDSHLKAYE   68 (338)
Q Consensus         3 ~g~~eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k---~~p~~~d----------~lg~~deAi~~ye   68 (338)
                      .|++++|+..+..+|..+|.+..+| .||.||..+|+.++|....-.   ++|.+.+          .+|.+.+|+-||.
T Consensus       152 rg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~cy~  231 (895)
T KOG2076|consen  152 RGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQARYCYS  231 (895)
T ss_pred             hCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHHHHH
Confidence            5999999999999999999999987 999999999999999998877   5666654          3889999999999


Q ss_pred             HHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCC
Q 019586           69 RAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPC  110 (338)
Q Consensus        69 kAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~  110 (338)
                      +||+.+|.+-...+....+|.++|++..|..+|.+++++.|.
T Consensus       232 rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~  273 (895)
T KOG2076|consen  232 RAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPP  273 (895)
T ss_pred             HHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCc
Confidence            999999999999999999999999999999999999999993

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=98.57  E-value=1.1e-07  Score=101.91  Aligned_cols=191  Identities=14%  Similarity=0.112  Sum_probs=126.2

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCCHH-HH-HHHHHHHHcCCHHHHHHHHHhhCcCCcC------------------------
Q 019586            2 QQNNYIEAEDAYRRALSIAPDNNK-MC-NLGICLMKQGRIGEAKETLRRVKPAVAD------------------------   55 (338)
Q Consensus         2 q~g~~eeAi~~y~kALeldPd~a~-a~-nLG~~y~~~G~~dEAi~~~~k~~p~~~d------------------------   55 (338)
                      +.|+|-.|+.+|++|+.++|.... .. .+|.|+.++|+.+.|+..|.++...+|.                        
T Consensus       176 nkkdY~~al~yyk~al~inp~~~aD~rIgig~Cf~kl~~~~~a~~a~~ralqLdp~~v~alv~L~~~~l~~~d~~s~~~~  255 (1018)
T KOG2002|consen  176 NKKDYRGALKYYKKALRINPACKADVRIGIGHCFWKLGMSEKALLAFERALQLDPTCVSALVALGEVDLNFNDSDSYKKG  255 (1018)
T ss_pred             ccccHHHHHHHHHHHHhcCcccCCCccchhhhHHHhccchhhHHHHHHHHHhcChhhHHHHHHHHHHHHHccchHHHHHH
Confidence            457888888888888888886554 33 7888888888888888888884443333                        


Q ss_pred             --------------------------CCCCHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHc
Q 019586           56 --------------------------GPRGVDSHLKAYERAQQMLK---DLESEMMNKGGDRVEQSRLFDAFLGSSSIWQ  106 (338)
Q Consensus        56 --------------------------~lg~~deAi~~yekAL~l~P---d~~~a~~nLG~~l~~lGr~~eAi~~yekALk  106 (338)
                                                ..|+|..+...++.|+...-   --++.+|.+|.+|+.+|+|++|..+|..+++
T Consensus       256 ~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k  335 (1018)
T KOG2002|consen  256 VQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLK  335 (1018)
T ss_pred             HHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHc
Confidence                                      14577777777777776542   2335578889999999999999999999999


Q ss_pred             cCCCCcc-c---ccchhhhcCccHHHHHhhhhcccCCChhhhhhhhhhhhcchH---------------HHHHHhHhHHH
Q 019586          107 PQPCKDH-I---LPTTNAIKTRDDFADENIDSNVDVNPIVLSKHRSVKKLFPTA---------------NAIKTQENFAD  167 (338)
Q Consensus       107 l~P~~~~-~---l~~l~~~~~~~~~A~e~~~~al~~~P~~~~K~~~~~kl~~~~---------------~ai~~~~~~~e  167 (338)
                      .+|++.. .   ++..+...+...-+...+...+..+|..+.....+..++...               +..+..+...+
T Consensus       336 ~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~  415 (1018)
T KOG2002|consen  336 ADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSE  415 (1018)
T ss_pred             cCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHH
Confidence            9888732 1   122245555556677777777777787665444444444443               13333466666


Q ss_pred             HhhchhhhhhHhhhhhhhhhhhhccccccC
Q 019586          168 ENINANIVVNQTVLAQQRGVQQLAPFGNSW  197 (338)
Q Consensus       168 ~y~nlg~~~~~~~~~d~r~~~~~~~~~~~~  197 (338)
                      +|.+++.+.     -+.++-..+.+|+.++
T Consensus       416 a~l~laql~-----e~~d~~~sL~~~~~A~  440 (1018)
T KOG2002|consen  416 AWLELAQLL-----EQTDPWASLDAYGNAL  440 (1018)
T ss_pred             HHHHHHHHH-----HhcChHHHHHHHHHHH
Confidence            777777744     3333333455566554

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=98.56  E-value=1e-07  Score=70.87  Aligned_cols=47  Identities=36%  Similarity=0.620  Sum_probs=39.8

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcC-CHHHHHHHHHh
Q 019586            2 QQNNYIEAEDAYRRALSIAPDNNKMC-NLGICLMKQG-RIGEAKETLRR   48 (338)
Q Consensus         2 q~g~~eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G-~~dEAi~~~~k   48 (338)
                      +.|+|++|+.+|++||+++|+++.++ ++|.+|..+| ++++|+..|++
T Consensus        15 ~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~   63 (69)
T PF13414_consen   15 QQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEK   63 (69)
T ss_dssp             HTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHH
Confidence            47899999999999999999999977 9999999999 68554444433

...

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=98.56  E-value=1.5e-07  Score=93.56  Aligned_cols=174  Identities=16%  Similarity=0.113  Sum_probs=136.8

Q ss_pred             CCCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcCCHHHHHHHHHh---hCcCCcCC----------------------
Q 019586            3 QNNYIEAEDAYRRALSIAPDNNKMC-NLGICLMKQGRIGEAKETLRR---VKPAVADG----------------------   56 (338)
Q Consensus         3 ~g~~eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k---~~p~~~d~----------------------   56 (338)
                      +.+|.+|+..|..||.+.|+++.+| |.+.+|+..|+|++|.-.+++   +.+.+...                      
T Consensus        62 ~k~Y~nal~~yt~Ai~~~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~~r~~~c~~a~~~~i~A~~~~~  141 (486)
T KOG0550|consen   62 QKTYGNALKNYTFAIDMCPDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQLREGQCHLALSDLIEAEEKLK  141 (486)
T ss_pred             HhhHHHHHHHHHHHHHhCccchhhhchhHHHHHHHHhHhhcccchhhheecCCCccccccchhhhhhhhHHHHHHHHHhh
Confidence            4579999999999999999999988 999999999999999988877   44444320                      


Q ss_pred             ----------------------------------------CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHH
Q 019586           57 ----------------------------------------PRGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFD   96 (338)
Q Consensus        57 ----------------------------------------lg~~deAi~~yekAL~l~Pd~~~a~~nLG~~l~~lGr~~e   96 (338)
                                                              ++++++|...--..+++++.+.++++-.|.+++..++.+.
T Consensus       142 ~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~~n~~al~vrg~~~yy~~~~~k  221 (486)
T KOG0550|consen  142 SKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDATNAEALYVRGLCLYYNDNADK  221 (486)
T ss_pred             hhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcccchhHHHHhcccccccccchHH
Confidence                                                    4678888888888899999999999999999999999999


Q ss_pred             HHHHHHHHHccCCCCcccccc---------------hhhhcCccHHHHHhhhhcccCCChhhh---hhhhh-----h---
Q 019586           97 AFLGSSSIWQPQPCKDHILPT---------------TNAIKTRDDFADENIDSNVDVNPIVLS---KHRSV-----K---  150 (338)
Q Consensus        97 Ai~~yekALkl~P~~~~~l~~---------------l~~~~~~~~~A~e~~~~al~~~P~~~~---K~~~~-----~---  150 (338)
                      |+.+|+++|.++|++......               -....|....+.+.+..++.++|...-   |.-..     .   
T Consensus       222 a~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLg  301 (486)
T KOG0550|consen  222 AINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLG  301 (486)
T ss_pred             HHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccC
Confidence            999999999999998762211               145778888899999999999997321   11111     1   


Q ss_pred             ----hhcchHHHHHHhHhHHHHhhchhhhh
Q 019586          151 ----KLFPTANAIKTQENFADENINANIVV  176 (338)
Q Consensus       151 ----kl~~~~~ai~~~~~~~e~y~nlg~~~  176 (338)
                          .+..+.+++++.+.+.++|.--+...
T Consensus       302 rl~eaisdc~~Al~iD~syikall~ra~c~  331 (486)
T KOG0550|consen  302 RLREAISDCNEALKIDSSYIKALLRRANCH  331 (486)
T ss_pred             CchhhhhhhhhhhhcCHHHHHHHHHHHHHH
Confidence                22333446677777888877777755

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=98.55  E-value=4e-07  Score=81.88  Aligned_cols=94  Identities=14%  Similarity=0.150  Sum_probs=77.0

Q ss_pred             HHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcCCH---HHHHHHHHhhCcCCcCCCCCHHHHHHHHHHHHHhCCCCHHHH
Q 019586            6 YIEAEDAYRRALSIAPDNNKMC-NLGICLMKQGRI---GEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDLESEM   81 (338)
Q Consensus         6 ~eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G~~---dEAi~~~~k~~p~~~d~lg~~deAi~~yekAL~l~Pd~~~a~   81 (338)
                      |+.|++.++.....+|.+++.+ +-|.+|..+.++   .++..++              ++|+.-|++||.++|+...++
T Consensus         7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~mi--------------edAisK~eeAL~I~P~~hdAl   72 (186)
T PF06552_consen    7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMI--------------EDAISKFEEALKINPNKHDAL   72 (186)
T ss_dssp             HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHH--------------HHHHHHHHHHHHH-TT-HHHH
T ss_pred             HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHH--------------HHHHHHHHHHHhcCCchHHHH
Confidence            6889999999999999999955 888888777665   5677777              679999999999999999999


Q ss_pred             HHHHHHHHHCCC-----------HHHHHHHHHHHHccCCCCcc
Q 019586           82 MNKGGDRVEQSR-----------LFDAFLGSSSIWQPQPCKDH  113 (338)
Q Consensus        82 ~nLG~~l~~lGr-----------~~eAi~~yekALkl~P~~~~  113 (338)
                      +++|.+|..++.           |++|..||++|...+|.+..
T Consensus        73 w~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~  115 (186)
T PF06552_consen   73 WCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDEDPNNEL  115 (186)
T ss_dssp             HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-TT-HH
T ss_pred             HHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhcCCCcHH
Confidence            999999998776           78889999999999998865

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=98.55  E-value=3.8e-07  Score=93.96  Aligned_cols=109  Identities=21%  Similarity=0.184  Sum_probs=90.1

Q ss_pred             CCCCHHHHHHHHHHHHHhC-----CCCHH---HH-HHHHHHHHcCCHHHHHHHHHhhCc--------CCcC---------
Q 019586            2 QQNNYIEAEDAYRRALSIA-----PDNNK---MC-NLGICLMKQGRIGEAKETLRRVKP--------AVAD---------   55 (338)
Q Consensus         2 q~g~~eeAi~~y~kALeld-----Pd~a~---a~-nLG~~y~~~G~~dEAi~~~~k~~p--------~~~d---------   55 (338)
                      .+++|.+|+..|++|+.+-     ++++.   .+ |||.+|.++|+|++|..+++++..        ..++         
T Consensus       253 ~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~  332 (508)
T KOG1840|consen  253 SLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELA  332 (508)
T ss_pred             HhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHH
Confidence            5789999999999999973     44444   44 999999999999999999998322        2222         


Q ss_pred             ----CCCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCC
Q 019586           56 ----GPRGVDSHLKAYERAQQML--------KDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPC  110 (338)
Q Consensus        56 ----~lg~~deAi~~yekAL~l~--------Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~  110 (338)
                          .++++++|..+|.+++++-        +..+..+.+||.+|+.+|+|.+|...|++|+++.-.
T Consensus       333 ~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~  399 (508)
T KOG1840|consen  333 AILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRE  399 (508)
T ss_pred             HHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHh
Confidence                2789999999999999874        234577899999999999999999999999988643

>PLN02789 farnesyltranstransferase

Probab=98.55  E-value=1e-06  Score=86.01  Aligned_cols=110  Identities=13%  Similarity=-0.014  Sum_probs=94.1

Q ss_pred             CHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcCCH--HHHHHHHHhhCcCCcC-------------CCCCHHHHHHHHH
Q 019586            5 NYIEAEDAYRRALSIAPDNNKMC-NLGICLMKQGRI--GEAKETLRRVKPAVAD-------------GPRGVDSHLKAYE   68 (338)
Q Consensus         5 ~~eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G~~--dEAi~~~~k~~p~~~d-------------~lg~~deAi~~ye   68 (338)
                      ++++|+.++.++++.+|++..+| ++|.++..+|+.  ++++.++.++...++.             .+|++++|+.++.
T Consensus        87 ~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~  166 (320)
T PLN02789         87 DLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCH  166 (320)
T ss_pred             hHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence            57999999999999999999977 999999999874  7788888884444433             3789999999999


Q ss_pred             HHHHhCCCCHHHHHHHHHHHHHC---CCH----HHHHHHHHHHHccCCCCccc
Q 019586           69 RAQQMLKDLESEMMNKGGDRVEQ---SRL----FDAFLGSSSIWQPQPCKDHI  114 (338)
Q Consensus        69 kAL~l~Pd~~~a~~nLG~~l~~l---Gr~----~eAi~~yekALkl~P~~~~~  114 (338)
                      ++|+++|++..+|+.+|.++...   |++    ++++.+..+++.++|++...
T Consensus       167 ~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~Sa  219 (320)
T PLN02789        167 QLLEEDVRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPRNESP  219 (320)
T ss_pred             HHHHHCCCchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCCCCcCH
Confidence            99999999999999999998876   334    46788888999999998763

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.54  E-value=3e-07  Score=91.19  Aligned_cols=93  Identities=13%  Similarity=0.177  Sum_probs=80.7

Q ss_pred             CCCCHHHHHHHHHHHHHhCC----CCHH-----------HH-HHHHHHHHcCCHHHHHHHHHhhCcCCcCCCCCHHHHHH
Q 019586            2 QQNNYIEAEDAYRRALSIAP----DNNK-----------MC-NLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLK   65 (338)
Q Consensus         2 q~g~~eeAi~~y~kALeldP----d~a~-----------a~-nLG~~y~~~G~~dEAi~~~~k~~p~~~d~lg~~deAi~   65 (338)
                      +.|+|..|...|++|+..-.    .+.+           .| ||+.||.++++|                     .+|+.
T Consensus       220 K~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~---------------------~~Ai~  278 (397)
T KOG0543|consen  220 KEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEY---------------------KEAIE  278 (397)
T ss_pred             hhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhH---------------------HHHHH
Confidence            57899999999999998632    1111           22 999999999999                     67788


Q ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCcccc
Q 019586           66 AYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDHIL  115 (338)
Q Consensus        66 ~yekAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~~l  115 (338)
                      +..++|+++|++..++|+.|.++..+|+|+.|+..|+++++++|.|..+.
T Consensus       279 ~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~  328 (397)
T KOG0543|consen  279 SCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAAR  328 (397)
T ss_pred             HHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHH
Confidence            88889999999999999999999999999999999999999999996644

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=98.54  E-value=3.1e-07  Score=92.69  Aligned_cols=68  Identities=18%  Similarity=0.195  Sum_probs=61.7

Q ss_pred             hCCCCHHHH-HHHHHHHHcCCHHHHHHHHHhhCcCCcCCCCCHHHHHHHHHHHHHhCCCCHHH---HHHHHHHHHHCCCH
Q 019586           19 IAPDNNKMC-NLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDLESE---MMNKGGDRVEQSRL   94 (338)
Q Consensus        19 ldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k~~p~~~d~lg~~deAi~~yekAL~l~Pd~~~a---~~nLG~~l~~lGr~   94 (338)
                      .+|+++++| |+|.+|..+|+|                     ++|+.+|++||+++|++.++   |+|+|.+|..+|++
T Consensus        70 ~dP~~a~a~~NLG~AL~~lGry---------------------eEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~  128 (453)
T PLN03098         70 ADVKTAEDAVNLGLSLFSKGRV---------------------KDALAQFETALELNPNPDEAQAAYYNKACCHAYREEG  128 (453)
T ss_pred             CCCCCHHHHHHHHHHHHHcCCH---------------------HHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCH
Confidence            478899977 999999999999                     55666677799999999965   99999999999999


Q ss_pred             HHHHHHHHHHHcc
Q 019586           95 FDAFLGSSSIWQP  107 (338)
Q Consensus        95 ~eAi~~yekALkl  107 (338)
                      ++|+.+|++|+++
T Consensus       129 dEAla~LrrALel  141 (453)
T PLN03098        129 KKAADCLRTALRD  141 (453)
T ss_pred             HHHHHHHHHHHHh
Confidence            9999999999998

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=98.53  E-value=4.2e-07  Score=80.26  Aligned_cols=91  Identities=9%  Similarity=-0.064  Sum_probs=75.5

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHhhCcCCcCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Q 019586           26 MCNLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIW  105 (338)
Q Consensus        26 a~nLG~~y~~~G~~dEAi~~~~k~~p~~~d~lg~~deAi~~yekAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekAL  105 (338)
                      .|.+|.-+...|++                     ++|...|+-+..++|.+...|++||.++..+|+|.+|+.+|.+++
T Consensus        38 lY~~A~~ly~~G~l---------------------~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~   96 (157)
T PRK15363         38 LYRYAMQLMEVKEF---------------------AGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAA   96 (157)
T ss_pred             HHHHHHHHHHCCCH---------------------HHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            66888888888888                     555666666999999999999999999999999999999999999


Q ss_pred             ccCCCCcc---cccchhhhcCccHHHHHhhhhccc
Q 019586          106 QPQPCKDH---ILPTTNAIKTRDDFADENIDSNVD  137 (338)
Q Consensus       106 kl~P~~~~---~l~~l~~~~~~~~~A~e~~~~al~  137 (338)
                      .++|+++.   ..+......+....|...+..++.
T Consensus        97 ~L~~ddp~~~~~ag~c~L~lG~~~~A~~aF~~Ai~  131 (157)
T PRK15363         97 QIKIDAPQAPWAAAECYLACDNVCYAIKALKAVVR  131 (157)
T ss_pred             hcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            99999998   333345677777777777776654

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=98.53  E-value=1.1e-06  Score=75.32  Aligned_cols=103  Identities=17%  Similarity=0.064  Sum_probs=84.1

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCCHH---H-HHHHHHHHHcCCHHHHHHHHHhhCcCCcC----------------CCCCHH
Q 019586            2 QQNNYIEAEDAYRRALSIAPDNNK---M-CNLGICLMKQGRIGEAKETLRRVKPAVAD----------------GPRGVD   61 (338)
Q Consensus         2 q~g~~eeAi~~y~kALeldPd~a~---a-~nLG~~y~~~G~~dEAi~~~~k~~p~~~d----------------~lg~~d   61 (338)
                      ..+++..+...+++.++-+|+..-   + +.+|.++...|++++|+..|+.+....++                ..|+++
T Consensus        23 ~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d  102 (145)
T PF09976_consen   23 QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYD  102 (145)
T ss_pred             HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHH
Confidence            357888888889999999998844   2 28999999999999999999996544433                278999


Q ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Q 019586           62 SHLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIW  105 (338)
Q Consensus        62 eAi~~yekAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekAL  105 (338)
                      +|+..++. +.-.+-.+.++..+|.+|..+|++++|+..|++||
T Consensus       103 ~Al~~L~~-~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al  145 (145)
T PF09976_consen  103 EALATLQQ-IPDEAFKALAAELLGDIYLAQGDYDEARAAYQKAL  145 (145)
T ss_pred             HHHHHHHh-ccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence            99999966 33344456778889999999999999999999875

>PRK15331 chaperone protein SicA; Provisional

Probab=98.53  E-value=3.5e-07  Score=81.21  Aligned_cols=90  Identities=14%  Similarity=0.043  Sum_probs=79.7

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcCCHHHHHHHHHhhCcCCcCCCCCHHHHHHHHHHHHHhCCCCHHH
Q 019586            2 QQNNYIEAEDAYRRALSIAPDNNKMC-NLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDLESE   80 (338)
Q Consensus         2 q~g~~eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k~~p~~~d~lg~~deAi~~yekAL~l~Pd~~~a   80 (338)
                      ++|++++|+..|+-...++|.+.+++ .||.|+..+++|                     ++|+..|..|.-++++++..
T Consensus        49 ~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y---------------------~~Ai~~Y~~A~~l~~~dp~p  107 (165)
T PRK15331         49 NQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQF---------------------QKACDLYAVAFTLLKNDYRP  107 (165)
T ss_pred             HCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHcccCCCCc
Confidence            57999999999999999999999977 999999999999                     55666667799999999999


Q ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHccCCCCcc
Q 019586           81 MMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDH  113 (338)
Q Consensus        81 ~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~  113 (338)
                      .+..|.+|+.+|+...|+.||+.++. .|.+..
T Consensus       108 ~f~agqC~l~l~~~~~A~~~f~~a~~-~~~~~~  139 (165)
T PRK15331        108 VFFTGQCQLLMRKAAKARQCFELVNE-RTEDES  139 (165)
T ss_pred             cchHHHHHHHhCCHHHHHHHHHHHHh-CcchHH
Confidence            99999999999999999999999998 455444

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=98.52  E-value=9.5e-07  Score=84.11  Aligned_cols=91  Identities=13%  Similarity=0.103  Sum_probs=75.2

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCCH---H-HHHHHHHHHHcCCHHHHHHHHHhhCcCCcCCCCCHHHHHHHHHHHHHhCCC-
Q 019586            2 QQNNYIEAEDAYRRALSIAPDNN---K-MCNLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKD-   76 (338)
Q Consensus         2 q~g~~eeAi~~y~kALeldPd~a---~-a~nLG~~y~~~G~~dEAi~~~~k~~p~~~d~lg~~deAi~~yekAL~l~Pd-   76 (338)
                      ..|+|++|+..|++.++..|+..   . .|-+|.+|...|++++                     |+..|++++...|+ 
T Consensus       155 ~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~---------------------A~~~f~~vv~~yP~s  213 (263)
T PRK10803        155 DKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDD---------------------AAYYFASVVKNYPKS  213 (263)
T ss_pred             hcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHH---------------------HHHHHHHHHHHCCCC
Confidence            35789999999999999998874   3 3489999999888855                     55555557777666 


Q ss_pred             --CHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCcc
Q 019586           77 --LESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDH  113 (338)
Q Consensus        77 --~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~  113 (338)
                        .+++++.+|.++..+|++++|+..|+++++..|+...
T Consensus       214 ~~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~yP~s~~  252 (263)
T PRK10803        214 PKAADAMFKVGVIMQDKGDTAKAKAVYQQVIKKYPGTDG  252 (263)
T ss_pred             cchhHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHH
Confidence              5688999999999999999999999999999998765

>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]

Probab=98.52  E-value=1.4e-07  Score=92.20  Aligned_cols=92  Identities=20%  Similarity=0.203  Sum_probs=84.3

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcCCHHHHHHHHHhhCcCCcCCCCCHHHHHHHHHHHHHhCCCCHH
Q 019586            1 MQQNNYIEAEDAYRRALSIAPDNNKMC-NLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDLES   79 (338)
Q Consensus         1 mq~g~~eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k~~p~~~d~lg~~deAi~~yekAL~l~Pd~~~   79 (338)
                      +++|+|+|||.||.++|.++|.++..+ |++.+|.++.+|                     ..|...++.|+.++..+..
T Consensus       108 FKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~F---------------------A~AE~DC~~AiaLd~~Y~K  166 (536)
T KOG4648|consen  108 FKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSF---------------------AQAEEDCEAAIALDKLYVK  166 (536)
T ss_pred             hhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHH---------------------HHHHHhHHHHHHhhHHHHH
Confidence            358999999999999999999999988 999999999988                     5667778889999999999


Q ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCcc
Q 019586           80 EMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDH  113 (338)
Q Consensus        80 a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~  113 (338)
                      +|.+.|.+...+|+..||...|+.+|++.|++-+
T Consensus       167 AYSRR~~AR~~Lg~~~EAKkD~E~vL~LEP~~~E  200 (536)
T KOG4648|consen  167 AYSRRMQARESLGNNMEAKKDCETVLALEPKNIE  200 (536)
T ss_pred             HHHHHHHHHHHHhhHHHHHHhHHHHHhhCcccHH
Confidence            9999999999999999999999999999999766

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.48  E-value=1.9e-06  Score=81.31  Aligned_cols=139  Identities=10%  Similarity=0.032  Sum_probs=116.2

Q ss_pred             CCCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcCCHHHHHHHHHhhCcCCcC-------------CCCCHHHHHHHHH
Q 019586            3 QNNYIEAEDAYRRALSIAPDNNKMC-NLGICLMKQGRIGEAKETLRRVKPAVAD-------------GPRGVDSHLKAYE   68 (338)
Q Consensus         3 ~g~~eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k~~p~~~d-------------~lg~~deAi~~ye   68 (338)
                      .|+.+-|..++.+.-...|.....- -.|..+-..|+|++|+++|+.+..++|.             ++|+.-+||+.+.
T Consensus        65 ~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln  144 (289)
T KOG3060|consen   65 TGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELN  144 (289)
T ss_pred             hcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHH
Confidence            5677889999999888888888766 8889999999999999999998777765             4899999999999


Q ss_pred             HHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCcccccch------hhhcCccHHHHHhhhhcccCCCh
Q 019586           69 RAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDHILPTT------NAIKTRDDFADENIDSNVDVNPI  141 (338)
Q Consensus        69 kAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~~l~~l------~~~~~~~~~A~e~~~~al~~~P~  141 (338)
                      .-++.-+.+.++|..|+.+|...|.|.+|.-||+..+=++|-++.....+      .+....-.++...+..++.++|.
T Consensus       145 ~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~  223 (289)
T KOG3060|consen  145 EYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPK  223 (289)
T ss_pred             HHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChH
Confidence            99999999999999999999999999999999999999999988743322      12333344567777777777773

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=98.47  E-value=2.5e-07  Score=68.16  Aligned_cols=56  Identities=45%  Similarity=0.546  Sum_probs=45.9

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcCCHHHHHHHHHhhCcCCcCCCCCHHHHHHHHHHHHHhCCCCH
Q 019586            2 QQNNYIEAEDAYRRALSIAPDNNKMC-NLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDLE   78 (338)
Q Consensus         2 q~g~~eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k~~p~~~d~lg~~deAi~~yekAL~l~Pd~~   78 (338)
                      +.|+|++|+..|+++++.+|++..++ .+|.++..+|++++|                     +..|++++++.|+++
T Consensus         9 ~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A---------------------~~~~~~a~~~~P~~p   65 (65)
T PF13432_consen    9 QQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEA---------------------LAYYERALELDPDNP   65 (65)
T ss_dssp             HCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHH---------------------HHHHHHHHHHSTT-H
T ss_pred             HcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHH---------------------HHHHHHHHHHCcCCC
Confidence            57999999999999999999999977 999999999999555                     455555777777754

>KOG4234 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.46  E-value=9.1e-07  Score=81.20  Aligned_cols=91  Identities=18%  Similarity=0.321  Sum_probs=82.2

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCCHH-----HH-HHHHHHHHcCCHHHHHHHHHhhCcCCcCCCCCHHHHHHHHHHHHHhCC
Q 019586            2 QQNNYIEAEDAYRRALSIAPDNNK-----MC-NLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLK   75 (338)
Q Consensus         2 q~g~~eeAi~~y~kALeldPd~a~-----a~-nLG~~y~~~G~~dEAi~~~~k~~p~~~d~lg~~deAi~~yekAL~l~P   75 (338)
                      ..|+|++|..-|..||++=|....     .| |.|.|++++++|                     +.|+....+||+++|
T Consensus       107 ~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~---------------------e~aI~dcsKaiel~p  165 (271)
T KOG4234|consen  107 KNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKW---------------------ESAIEDCSKAIELNP  165 (271)
T ss_pred             hcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhH---------------------HHHHHHHHhhHhcCc
Confidence            468999999999999999887655     33 999999999999                     667777888999999


Q ss_pred             CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCcc
Q 019586           76 DLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDH  113 (338)
Q Consensus        76 d~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~  113 (338)
                      .+..++.+.+.+|.++.+|++|+..|.++++++|...+
T Consensus       166 ty~kAl~RRAeayek~ek~eealeDyKki~E~dPs~~e  203 (271)
T KOG4234|consen  166 TYEKALERRAEAYEKMEKYEEALEDYKKILESDPSRRE  203 (271)
T ss_pred             hhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCcchHH
Confidence            99999999999999999999999999999999998654

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.45  E-value=1.3e-06  Score=87.18  Aligned_cols=150  Identities=15%  Similarity=0.018  Sum_probs=120.2

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcCCHHHHHHHHHh---hCcCCcCC------------CCCHHHHHH
Q 019586            2 QQNNYIEAEDAYRRALSIAPDNNKMC-NLGICLMKQGRIGEAKETLRR---VKPAVADG------------PRGVDSHLK   65 (338)
Q Consensus         2 q~g~~eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k---~~p~~~d~------------lg~~deAi~   65 (338)
                      +.|+.++|+-.|+.|+.+.|..-+.| .|-.+|..+|++.||...-..   +.+..+..            ..--++|.+
T Consensus       346 ~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKk  425 (564)
T KOG1174|consen  346 ALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKAKK  425 (564)
T ss_pred             hccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcchhhhhhhcceeeccCchhHHHHHH
Confidence            45778888888888888888888777 888888888888888776655   33333332            235689999


Q ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCcc--cccchhhhcCccHHHHHhhhhcccCCChhh
Q 019586           66 AYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDH--ILPTTNAIKTRDDFADENIDSNVDVNPIVL  143 (338)
Q Consensus        66 ~yekAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~--~l~~l~~~~~~~~~A~e~~~~al~~~P~~~  143 (338)
                      .|+++++++|++..+-+.++..+...|++.+++..+++.|...|++.-  +++.+.......+.+.+.+..++.+||+..
T Consensus       426 f~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~  505 (564)
T KOG1174|consen  426 FAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSK  505 (564)
T ss_pred             HHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccch
Confidence            999999999999999999999999999999999999999999998754  555555666777888899999999999866


Q ss_pred             hhhhhhhh
Q 019586          144 SKHRSVKK  151 (338)
Q Consensus       144 ~K~~~~~k  151 (338)
                      -.++.+.+
T Consensus       506 ~sl~Gl~~  513 (564)
T KOG1174|consen  506 RTLRGLRL  513 (564)
T ss_pred             HHHHHHHH
Confidence            55544433

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=98.45  E-value=2.3e-06  Score=83.80  Aligned_cols=182  Identities=12%  Similarity=0.067  Sum_probs=109.9

Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcCCHHHHHHHHHhhCcCCcC---------------------------
Q 019586            4 NNYIEAEDAYRRALSIAPDNNKMC-NLGICLMKQGRIGEAKETLRRVKPAVAD---------------------------   55 (338)
Q Consensus         4 g~~eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k~~p~~~d---------------------------   55 (338)
                      |+-.-|+.-+.+.|++.||+..+. ..|.+++++|++++|+..|.++....+.                           
T Consensus        86 Gksk~al~Dl~rVlelKpDF~~ARiQRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~  165 (504)
T KOG0624|consen   86 GKSKAALQDLSRVLELKPDFMAARIQRGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSA  165 (504)
T ss_pred             cCCccchhhHHHHHhcCccHHHHHHHhchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHH
Confidence            334445555555555555555554 6777777777777777777775544442                           


Q ss_pred             -CCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCcccccc---hhhhcCccHHHHHh
Q 019586           56 -GPRGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDHILPT---TNAIKTRDDFADEN  131 (338)
Q Consensus        56 -~lg~~deAi~~yekAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~~l~~---l~~~~~~~~~A~e~  131 (338)
                       .-|++..|+....+.|++.|=.+..+...+.+|...|+...|+..++.+-++..++.+.+..   +....+....+...
T Consensus       166 ~~~GD~~~ai~~i~~llEi~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~  245 (504)
T KOG0624|consen  166 SGSGDCQNAIEMITHLLEIQPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKE  245 (504)
T ss_pred             hcCCchhhHHHHHHHHHhcCcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHH
Confidence             14577777777788888877777777777888888888888888888887777777763322   23344444445555


Q ss_pred             hhhcccCCChhhhhhhhhhhhcchHHHHHHhHhHHHHhhchhhhhhHhhhhhhhhhhhhccccccCCCC
Q 019586          132 IDSNVDVNPIVLSKHRSVKKLFPTANAIKTQENFADENINANIVVNQTVLAQQRGVQQLAPFGNSWNID  200 (338)
Q Consensus       132 ~~~al~~~P~~~~K~~~~~kl~~~~~ai~~~~~~~e~y~nlg~~~~~~~~~d~r~~~~~~~~~~~~~~~  200 (338)
                      +...+.+||.-...       |++-+.++..-+      .  +..-.....+++|+.++.+...-|...
T Consensus       246 iRECLKldpdHK~C-------f~~YKklkKv~K------~--les~e~~ie~~~~t~cle~ge~vlk~e  299 (504)
T KOG0624|consen  246 IRECLKLDPDHKLC-------FPFYKKLKKVVK------S--LESAEQAIEEKHWTECLEAGEKVLKNE  299 (504)
T ss_pred             HHHHHccCcchhhH-------HHHHHHHHHHHH------H--HHHHHHHHhhhhHHHHHHHHHHHHhcC
Confidence            66666667751111       111111111111      1  112225678888888887755555553

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=98.45  E-value=9.4e-07  Score=73.47  Aligned_cols=80  Identities=21%  Similarity=0.203  Sum_probs=70.4

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcCCHHHHHHHHHhhC---cCCcC----------CCCCHHHHHHHH
Q 019586            2 QQNNYIEAEDAYRRALSIAPDNNKMC-NLGICLMKQGRIGEAKETLRRVK---PAVAD----------GPRGVDSHLKAY   67 (338)
Q Consensus         2 q~g~~eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k~~---p~~~d----------~lg~~deAi~~y   67 (338)
                      +.|++++|+..|++++.++|++..++ ++|.+|..+|++++|+.+|+++.   |.+++          ..|++++|+..|
T Consensus        29 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~  108 (135)
T TIGR02552        29 QQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLLALGEPESALKAL  108 (135)
T ss_pred             HcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCCHHHHHHHH
Confidence            46899999999999999999999977 99999999999999999999953   33333          388999999999


Q ss_pred             HHHHHhCCCCHHHH
Q 019586           68 ERAQQMLKDLESEM   81 (338)
Q Consensus        68 ekAL~l~Pd~~~a~   81 (338)
                      +++++++|+.....
T Consensus       109 ~~al~~~p~~~~~~  122 (135)
T TIGR02552       109 DLAIEICGENPEYS  122 (135)
T ss_pred             HHHHHhccccchHH
Confidence            99999999887644

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=98.45  E-value=4e-07  Score=67.37  Aligned_cols=65  Identities=31%  Similarity=0.351  Sum_probs=52.0

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcCCHHHHHHHHHhhCcCCcCCCCCHHHHHHHHHHHHHhCCCCHH
Q 019586            1 MQQNNYIEAEDAYRRALSIAPDNNKMC-NLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDLES   79 (338)
Q Consensus         1 mq~g~~eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k~~p~~~d~lg~~deAi~~yekAL~l~Pd~~~   79 (338)
                      ++.|+|++|+..|++++..+|++.+++ .+|.||..+|++++|...                     +++++..+|+++.
T Consensus         2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~---------------------l~~~~~~~~~~~~   60 (68)
T PF14559_consen    2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEEL---------------------LERLLKQDPDNPE   60 (68)
T ss_dssp             HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHH---------------------HHCCHGGGTTHHH
T ss_pred             hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHH---------------------HHHHHHHCcCHHH
Confidence            357999999999999999999999977 999999999999555554                     5557777787766


Q ss_pred             HHHHHHH
Q 019586           80 EMMNKGG   86 (338)
Q Consensus        80 a~~nLG~   86 (338)
                      ++.-++.
T Consensus        61 ~~~l~a~   67 (68)
T PF14559_consen   61 YQQLLAQ   67 (68)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHhc
Confidence            6665543

...

>PRK11906 transcriptional regulator; Provisional

Probab=98.43  E-value=1.5e-06  Score=88.06  Aligned_cols=122  Identities=11%  Similarity=-0.030  Sum_probs=84.8

Q ss_pred             HHHHHHHHHHHH---HhCCCCHHHH-HHHHHHHHc--CCHHHHHHHHHhhCcCCcCCCCCHHHHHHHHHHHHHhCCCCHH
Q 019586            6 YIEAEDAYRRAL---SIAPDNNKMC-NLGICLMKQ--GRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDLES   79 (338)
Q Consensus         6 ~eeAi~~y~kAL---eldPd~a~a~-nLG~~y~~~--G~~dEAi~~~~k~~p~~~d~lg~~deAi~~yekAL~l~Pd~~~   79 (338)
                      .+.|..+|.+|+   +++|+++.+| -++.|+...  ..|.+              ......+|....++|++++|+++.
T Consensus       274 ~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~--------------~~~~~~~a~~~A~rAveld~~Da~  339 (458)
T PRK11906        274 IYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSE--------------LELAAQKALELLDYVSDITTVDGK  339 (458)
T ss_pred             HHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCC--------------chHHHHHHHHHHHHHHhcCCCCHH
Confidence            578999999999   9999999988 888888654  11111              111235667777777777777777


Q ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCcccccc---hhhhcCccHHHHHhhhhcccCCCh
Q 019586           80 EMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDHILPT---TNAIKTRDDFADENIDSNVDVNPI  141 (338)
Q Consensus        80 a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~~l~~---l~~~~~~~~~A~e~~~~al~~~P~  141 (338)
                      ++..+|.++...|+++.|+..|++|+.++|+.+..+..   +..-.|+.+.+.+.+..++.++|.
T Consensus       340 a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~  404 (458)
T PRK11906        340 ILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPR  404 (458)
T ss_pred             HHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCch
Confidence            77777777777777777777777777777777663222   233456667777777777777776

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=98.43  E-value=7e-07  Score=66.96  Aligned_cols=55  Identities=15%  Similarity=0.116  Sum_probs=50.7

Q ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCcc
Q 019586           59 GVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDH  113 (338)
Q Consensus        59 ~~deAi~~yekAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~  113 (338)
                      ++++|+.++++++.++|+.+..|..+|.++..+|++.+|+.+|+++++..|++..
T Consensus        10 ~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~   64 (73)
T PF13371_consen   10 DYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPD   64 (73)
T ss_pred             CHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHH
Confidence            3377788888899999999999999999999999999999999999999998765

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=98.43  E-value=2e-07  Score=71.09  Aligned_cols=69  Identities=17%  Similarity=0.085  Sum_probs=53.0

Q ss_pred             HHH-HHHHHHHHcCCHHHHHHHHHhhCcCCcCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Q 019586           25 KMC-NLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSS  103 (338)
Q Consensus        25 ~a~-nLG~~y~~~G~~dEAi~~~~k~~p~~~d~lg~~deAi~~yekAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yek  103 (338)
                      ..+ ++|.+|..+|+|++|+.+|++              |+..++..-.-.|+.+.+++++|.++..+|++++|+.+|++
T Consensus         6 ~~~~~la~~~~~~~~~~~A~~~~~~--------------al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~   71 (78)
T PF13424_consen    6 NAYNNLARVYRELGRYDEALDYYEK--------------ALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQK   71 (78)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHH--------------HHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHH--------------HHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            344 999999999999888888855              55553222222244567899999999999999999999999


Q ss_pred             HHcc
Q 019586          104 IWQP  107 (338)
Q Consensus       104 ALkl  107 (338)
                      ++++
T Consensus        72 al~i   75 (78)
T PF13424_consen   72 ALDI   75 (78)
T ss_dssp             HHHH
T ss_pred             HHhh
Confidence            9875

...

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=98.43  E-value=1.4e-06  Score=91.97  Aligned_cols=111  Identities=17%  Similarity=0.038  Sum_probs=96.3

Q ss_pred             CCCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcCCHHHHHHHHHh---hCcCCcCC----------CCCHHHHHH--H
Q 019586            3 QNNYIEAEDAYRRALSIAPDNNKMC-NLGICLMKQGRIGEAKETLRR---VKPAVADG----------PRGVDSHLK--A   66 (338)
Q Consensus         3 ~g~~eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k---~~p~~~d~----------lg~~deAi~--~   66 (338)
                      .+.-++|..++.+|-.++|-.+..| -.|.++..+|+++||...|.-   ++|++...          .|+..-|..  .
T Consensus       663 ~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~  742 (799)
T KOG4162|consen  663 SGNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLELGSPRLAEKRSL  742 (799)
T ss_pred             cCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHH
Confidence            4567888899999999999988866 889999999999999999998   45555542          455455555  9


Q ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCcc
Q 019586           67 YERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDH  113 (338)
Q Consensus        67 yekAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~  113 (338)
                      +..|++++|.++++|+++|.++..+|+.++|..||+.|+++.+.+|.
T Consensus       743 L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~PV  789 (799)
T KOG4162|consen  743 LSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEESNPV  789 (799)
T ss_pred             HHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccCCCc
Confidence            99999999999999999999999999999999999999999998876

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=98.42  E-value=2.9e-06  Score=80.00  Aligned_cols=131  Identities=11%  Similarity=0.050  Sum_probs=107.7

Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHcCCHHHHHHHHHhhCc---CCcC----------CCCCHHHHHHHHHHHHH
Q 019586            6 YIEAEDAYRRALSIAPDNNKMCNLGICLMKQGRIGEAKETLRRVKP---AVAD----------GPRGVDSHLKAYERAQQ   72 (338)
Q Consensus         6 ~eeAi~~y~kALeldPd~a~a~nLG~~y~~~G~~dEAi~~~~k~~p---~~~d----------~lg~~deAi~~yekAL~   72 (338)
                      ...+...+-+....+|++...+++...|...|+-+.+..+..++.-   .+..          ..|++.+|+..+.++.+
T Consensus        49 ~~~a~~al~~~~~~~p~d~~i~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~  128 (257)
T COG5010          49 TQGAAAALGAAVLRNPEDLSIAKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAAR  128 (257)
T ss_pred             hhHHHHHHHHHHhcCcchHHHHHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhc
Confidence            3456667777788899988889999999999999999999988332   3322          26899999999999999


Q ss_pred             hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCcccccch---hhhcCccHHHHHhhhhcc
Q 019586           73 MLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDHILPTT---NAIKTRDDFADENIDSNV  136 (338)
Q Consensus        73 l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~~l~~l---~~~~~~~~~A~e~~~~al  136 (338)
                      +.|++.++|+-+|.+|.+.|++++|...|.+++++.|+.+.+..++   ....++..-|...+..+.
T Consensus       129 l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~  195 (257)
T COG5010         129 LAPTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAY  195 (257)
T ss_pred             cCCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999866554   455566656655555443

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=98.39  E-value=1.3e-06  Score=86.25  Aligned_cols=87  Identities=8%  Similarity=0.073  Sum_probs=74.7

Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCcccc---cchhhhcCccHHHHHhhhh
Q 019586           58 RGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDHIL---PTTNAIKTRDDFADENIDS  134 (338)
Q Consensus        58 g~~deAi~~yekAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~~l---~~l~~~~~~~~~A~e~~~~  134 (338)
                      +++++|+..|++||+++|+++.+|+++|.+|..+|++++|+.+++++++++|.++..+   +.+....++.+.|...+..
T Consensus        16 ~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~eA~~~~~~   95 (356)
T PLN03088         16 DDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQTAKAALEK   95 (356)
T ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence            3447778888889999999999999999999999999999999999999999988733   3345678888889999999


Q ss_pred             cccCCChhhh
Q 019586          135 NVDVNPIVLS  144 (338)
Q Consensus       135 al~~~P~~~~  144 (338)
                      ++.++|....
T Consensus        96 al~l~P~~~~  105 (356)
T PLN03088         96 GASLAPGDSR  105 (356)
T ss_pred             HHHhCCCCHH
Confidence            9988887543

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=98.36  E-value=2.2e-06  Score=62.75  Aligned_cols=90  Identities=18%  Similarity=0.148  Sum_probs=67.2

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHhhCcCCcCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHc
Q 019586           27 CNLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQ  106 (338)
Q Consensus        27 ~nLG~~y~~~G~~dEAi~~~~k~~p~~~d~lg~~deAi~~yekAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALk  106 (338)
                      +++|.++..+|++                     ++|+..+++++++.|....+++.+|.++...|++++|+.+|++++.
T Consensus         4 ~~~a~~~~~~~~~---------------------~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~   62 (100)
T cd00189           4 LNLGNLYYKLGDY---------------------DEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALE   62 (100)
T ss_pred             HHHHHHHHHHhcH---------------------HHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            4788888888888                     5566666779999999999999999999999999999999999999


Q ss_pred             cCCCCcccc---cchhhhcCccHHHHHhhhhccc
Q 019586          107 PQPCKDHIL---PTTNAIKTRDDFADENIDSNVD  137 (338)
Q Consensus       107 l~P~~~~~l---~~l~~~~~~~~~A~e~~~~al~  137 (338)
                      ..|.+...+   +.+....+....+...+...+.
T Consensus        63 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~   96 (100)
T cd00189          63 LDPDNAKAYYNLGLAYYKLGKYEEALEAYEKALE   96 (100)
T ss_pred             CCCcchhHHHHHHHHHHHHHhHHHHHHHHHHHHc
Confidence            999876422   1222333444444444444433

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.35  E-value=2.4e-06  Score=86.17  Aligned_cols=160  Identities=14%  Similarity=0.137  Sum_probs=122.0

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcCCHHHHHHHHHhh---CcCCcC----------CCCCHHHHHHHH
Q 019586            2 QQNNYIEAEDAYRRALSIAPDNNKMC-NLGICLMKQGRIGEAKETLRRV---KPAVAD----------GPRGVDSHLKAY   67 (338)
Q Consensus         2 q~g~~eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k~---~p~~~d----------~lg~~deAi~~y   67 (338)
                      ..|+++.|...|+.|+.-+....++. |+|.++..+|++++|+.+|-++   +-+..+          .+.+..+|+++|
T Consensus       502 ~ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~  581 (840)
T KOG2003|consen  502 ANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELL  581 (840)
T ss_pred             ecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHH
Confidence            35899999999999998877777744 9999999999999999999983   333333          377899999999


Q ss_pred             HHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCcccccchhhhcCccHH---HHHhhhhcccCCChhhh
Q 019586           68 ERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDHILPTTNAIKTRDDF---ADENIDSNVDVNPIVLS  144 (338)
Q Consensus        68 ekAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~~l~~l~~~~~~~~~---A~e~~~~al~~~P~~~~  144 (338)
                      -++..+-|+++.++..||.+|-+.|+-.+|+.|+=.....-|++-+...-+.+-....+|   ++.++..+--+.|. ++
T Consensus       582 ~q~~slip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~-~~  660 (840)
T KOG2003|consen  582 MQANSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPN-QS  660 (840)
T ss_pred             HHhcccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCcc-HH
Confidence            999999999999999999999999999999999888899999987622222222233333   56666666666665 23


Q ss_pred             hhh-----hhhhhcchHHHHHHh
Q 019586          145 KHR-----SVKKLFPTANAIKTQ  162 (338)
Q Consensus       145 K~~-----~~~kl~~~~~ai~~~  162 (338)
                      |.+     -++....+++++...
T Consensus       661 kwqlmiasc~rrsgnyqka~d~y  683 (840)
T KOG2003|consen  661 KWQLMIASCFRRSGNYQKAFDLY  683 (840)
T ss_pred             HHHHHHHHHHHhcccHHHHHHHH
Confidence            332     244666777776654

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=98.34  E-value=7.9e-07  Score=65.74  Aligned_cols=57  Identities=14%  Similarity=0.033  Sum_probs=52.0

Q ss_pred             CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCcc
Q 019586           57 PRGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDH  113 (338)
Q Consensus        57 lg~~deAi~~yekAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~  113 (338)
                      .|++++|+..|++++..+|++..+++.+|.+|..+|++++|...+++++..+|+++.
T Consensus         4 ~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~   60 (68)
T PF14559_consen    4 QGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPE   60 (68)
T ss_dssp             TTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHH
T ss_pred             ccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHH
Confidence            356788999999999999999999999999999999999999999999999999755

...

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=98.33  E-value=1.3e-05  Score=85.96  Aligned_cols=140  Identities=14%  Similarity=0.045  Sum_probs=116.9

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcCCHHHHHHHHHhhCcCCcC-------------------------
Q 019586            2 QQNNYIEAEDAYRRALSIAPDNNKMC-NLGICLMKQGRIGEAKETLRRVKPAVAD-------------------------   55 (338)
Q Consensus         2 q~g~~eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k~~p~~~d-------------------------   55 (338)
                      ++|++.+|+-+|.+||+.+|.+..+. +.+.+|.+.|++..|...|.++.+..|.                         
T Consensus       219 ~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~  298 (895)
T KOG2076|consen  219 QLGNINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERER  298 (895)
T ss_pred             hcccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHH
Confidence            57899999999999999999998855 9999999999999999999995544441                         


Q ss_pred             --------------------------------------------------------------------------------
Q 019586           56 --------------------------------------------------------------------------------   55 (338)
Q Consensus        56 --------------------------------------------------------------------------------   55 (338)
                                                                                                      
T Consensus       299 a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l  378 (895)
T KOG2076|consen  299 AAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDL  378 (895)
T ss_pred             HHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccc
Confidence                                                                                            


Q ss_pred             -----------------------------------------------CCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHH
Q 019586           56 -----------------------------------------------GPRGVDSHLKAYERAQQMLKD-LESEMMNKGGD   87 (338)
Q Consensus        56 -----------------------------------------------~lg~~deAi~~yekAL~l~Pd-~~~a~~nLG~~   87 (338)
                                                                     ..|.+.+|+..|...+...+. +...|+.+|.+
T Consensus       379 ~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c  458 (895)
T KOG2076|consen  379 RVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARC  458 (895)
T ss_pred             hhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHH
Confidence                                                           035888999999888776654 45689999999


Q ss_pred             HHHCCCHHHHHHHHHHHHccCCCCcc---cccchhhhcCccHHHHHhhhhcccCCCh
Q 019586           88 RVEQSRLFDAFLGSSSIWQPQPCKDH---ILPTTNAIKTRDDFADENIDSNVDVNPI  141 (338)
Q Consensus        88 l~~lGr~~eAi~~yekALkl~P~~~~---~l~~l~~~~~~~~~A~e~~~~al~~~P~  141 (338)
                      |+.+|.+++|+.+|.++|.++|.+..   .+++++.++|..+.|.+.+.....+++.
T Consensus       459 ~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~  515 (895)
T KOG2076|consen  459 YMELGEYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGR  515 (895)
T ss_pred             HHHHhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCcc
Confidence            99999999999999999999999887   4455578899999998888776544543

>TIGR00540 hemY_coli hemY protein

Probab=98.32  E-value=7.5e-06  Score=81.86  Aligned_cols=112  Identities=9%  Similarity=-0.031  Sum_probs=89.4

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcCCHHHHHHHHHhhCcC---CcC---------CCC-----CHHHH
Q 019586            2 QQNNYIEAEDAYRRALSIAPDNNKMC-NLGICLMKQGRIGEAKETLRRVKPA---VAD---------GPR-----GVDSH   63 (338)
Q Consensus         2 q~g~~eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k~~p~---~~d---------~lg-----~~deA   63 (338)
                      +.|++++|...+++.++..|+++..+ -++.+|..+|+|++|+..+.++...   .+.         ..+     ..+++
T Consensus       165 ~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~  244 (409)
T TIGR00540       165 AQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEG  244 (409)
T ss_pred             HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            46889999999999999999988866 8899999999999888888884422   111         011     22333


Q ss_pred             HHHHHHHHHhCC----CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCcc
Q 019586           64 LKAYERAQQMLK----DLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDH  113 (338)
Q Consensus        64 i~~yekAL~l~P----d~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~  113 (338)
                      ...+.++.+..|    +.+..+..+|..+...|++++|...++++++..|++..
T Consensus       245 ~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~  298 (409)
T TIGR00540       245 IDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRA  298 (409)
T ss_pred             HHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCccc
Confidence            457777888788    58899999999999999999999999999999998874

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.29  E-value=7e-06  Score=80.11  Aligned_cols=139  Identities=11%  Similarity=-0.012  Sum_probs=104.1

Q ss_pred             CCCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcCCHHHHHHHHHhhC---cCCcCC----------CCCHHHHHHHHH
Q 019586            3 QNNYIEAEDAYRRALSIAPDNNKMC-NLGICLMKQGRIGEAKETLRRVK---PAVADG----------PRGVDSHLKAYE   68 (338)
Q Consensus         3 ~g~~eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k~~---p~~~d~----------lg~~deAi~~ye   68 (338)
                      ..+.+.|+..|.+.+...|.+..+. ..+.++..++++++|.++|+.+.   |.+.++          -++.+-|+.+|+
T Consensus       269 idQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYR  348 (478)
T KOG1129|consen  269 IDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYR  348 (478)
T ss_pred             hccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHH
Confidence            3456778888888888888777755 88889999999999999998843   333332          468888999999


Q ss_pred             HHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCcc---c---ccchhhhcCccHHHHHhhhhcccCCCh
Q 019586           69 RAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDH---I---LPTTNAIKTRDDFADENIDSNVDVNPI  141 (338)
Q Consensus        69 kAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~---~---l~~l~~~~~~~~~A~e~~~~al~~~P~  141 (338)
                      +.+++.-..++.+.|+|.+.+..++++-++.+|++|+...-+...   +   ++.+.-..|....|...+..++..||.
T Consensus       349 RiLqmG~~speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~  427 (478)
T KOG1129|consen  349 RILQMGAQSPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQ  427 (478)
T ss_pred             HHHHhcCCChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcc
Confidence            999999889999999999999999999999999998877543322   2   233344556666666667666666665

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=98.28  E-value=1.4e-05  Score=67.52  Aligned_cols=83  Identities=22%  Similarity=0.094  Sum_probs=65.1

Q ss_pred             CCCHHHHHHHHHHHHHhCCCCHH---HH-HHHHHHHHcCCHHHHHHHHHhhCcCCcCCCCCHHHHHHHHHHHHHhCCC--
Q 019586            3 QNNYIEAEDAYRRALSIAPDNNK---MC-NLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKD--   76 (338)
Q Consensus         3 ~g~~eeAi~~y~kALeldPd~a~---a~-nLG~~y~~~G~~dEAi~~~~k~~p~~~d~lg~~deAi~~yekAL~l~Pd--   76 (338)
                      .|+.++|+.+|++|++...+...   ++ ++|.+|..+|++++                     |+..+++++.-.|+  
T Consensus        14 ~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~de---------------------A~~~L~~~~~~~p~~~   72 (120)
T PF12688_consen   14 LGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDE---------------------ALALLEEALEEFPDDE   72 (120)
T ss_pred             cCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHH---------------------HHHHHHHHHHHCCCcc
Confidence            58888889999988887665543   33 88888888888855                     45555557777787  


Q ss_pred             -CHHHHHHHHHHHHHCCCHHHHHHHHHHHHc
Q 019586           77 -LESEMMNKGGDRVEQSRLFDAFLGSSSIWQ  106 (338)
Q Consensus        77 -~~~a~~nLG~~l~~lGr~~eAi~~yekALk  106 (338)
                       .......++.++...|++++|+.++-.++.
T Consensus        73 ~~~~l~~f~Al~L~~~gr~~eAl~~~l~~la  103 (120)
T PF12688_consen   73 LNAALRVFLALALYNLGRPKEALEWLLEALA  103 (120)
T ss_pred             ccHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence             777888899999999999999999877764

>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=98.27  E-value=2.1e-06  Score=80.39  Aligned_cols=84  Identities=20%  Similarity=0.212  Sum_probs=76.9

Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcCCHHHHHHHHHhhCcCCcCCCCCHHHHHHHHHHHHHhCCCCHHHHH
Q 019586            4 NNYIEAEDAYRRALSIAPDNNKMC-NLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDLESEMM   82 (338)
Q Consensus         4 g~~eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k~~p~~~d~lg~~deAi~~yekAL~l~Pd~~~a~~   82 (338)
                      .+|..||.+|.+||.++|..+.+| |.+.||++..+|                     +.......+|+++.|+...+++
T Consensus        24 k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~---------------------~~v~~dcrralql~~N~vk~h~   82 (284)
T KOG4642|consen   24 KRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHW---------------------EPVEEDCRRALQLDPNLVKAHY   82 (284)
T ss_pred             hhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhh---------------------hhhhhhHHHHHhcChHHHHHHH
Confidence            468999999999999999999988 999999999999                     5566777789999999999999


Q ss_pred             HHHHHHHHCCCHHHHHHHHHHHHccC
Q 019586           83 NKGGDRVEQSRLFDAFLGSSSIWQPQ  108 (338)
Q Consensus        83 nLG~~l~~lGr~~eAi~~yekALkl~  108 (338)
                      .+|.+++....|++|+.+++++..+-
T Consensus        83 flg~~~l~s~~~~eaI~~Lqra~sl~  108 (284)
T KOG4642|consen   83 FLGQWLLQSKGYDEAIKVLQRAYSLL  108 (284)
T ss_pred             HHHHHHHhhccccHHHHHHHHHHHHH
Confidence            99999999999999999999996553

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=98.26  E-value=5.1e-06  Score=62.22  Aligned_cols=64  Identities=30%  Similarity=0.489  Sum_probs=54.1

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcCCHHHHHHHHHhhCcCCcCCCCCHHHHHHHHHHHHHhCCCCHH
Q 019586            1 MQQNNYIEAEDAYRRALSIAPDNNKMC-NLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDLES   79 (338)
Q Consensus         1 mq~g~~eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k~~p~~~d~lg~~deAi~~yekAL~l~Pd~~~   79 (338)
                      ++.++|++|+.++++++.++|++...+ .+|.+|..+|++                     ++|+..|+++++..|+.+.
T Consensus         6 ~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~---------------------~~A~~~l~~~l~~~p~~~~   64 (73)
T PF13371_consen    6 LQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRY---------------------EEALEDLERALELSPDDPD   64 (73)
T ss_pred             HhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccH---------------------HHHHHHHHHHHHHCCCcHH
Confidence            357899999999999999999999977 999999999999                     5556666668889998887


Q ss_pred             HHHHHH
Q 019586           80 EMMNKG   85 (338)
Q Consensus        80 a~~nLG   85 (338)
                      +...+.
T Consensus        65 ~~~~~a   70 (73)
T PF13371_consen   65 ARALRA   70 (73)
T ss_pred             HHHHHH
Confidence            765443

>TIGR00540 hemY_coli hemY protein

Probab=98.25  E-value=6.5e-06  Score=82.29  Aligned_cols=128  Identities=12%  Similarity=0.007  Sum_probs=102.3

Q ss_pred             HHHHHHHHHHhCC----CCHHHH-HHHHHHHHcCCHHHHHHHHHhh---CcCCcC------------CCCCHHHHHHHHH
Q 019586            9 AEDAYRRALSIAP----DNNKMC-NLGICLMKQGRIGEAKETLRRV---KPAVAD------------GPRGVDSHLKAYE   68 (338)
Q Consensus         9 Ai~~y~kALeldP----d~a~a~-nLG~~y~~~G~~dEAi~~~~k~---~p~~~d------------~lg~~deAi~~ye   68 (338)
                      ++..+.++....|    ++...+ .+|..+...|++++|+..+++.   .|++..            ..++.+.+++.++
T Consensus       244 ~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e  323 (409)
T TIGR00540       244 GIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIE  323 (409)
T ss_pred             CHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHH
Confidence            3446666777677    366655 9999999999999999999993   455442            1467899999999


Q ss_pred             HHHHhCCCCH--HHHHHHHHHHHHCCCHHHHHHHHH--HHHccCCCCcc--cccchhhhcCccHHHHHhhhhcc
Q 019586           69 RAQQMLKDLE--SEMMNKGGDRVEQSRLFDAFLGSS--SIWQPQPCKDH--ILPTTNAIKTRDDFADENIDSNV  136 (338)
Q Consensus        69 kAL~l~Pd~~--~a~~nLG~~l~~lGr~~eAi~~ye--kALkl~P~~~~--~l~~l~~~~~~~~~A~e~~~~al  136 (338)
                      ++++..|+++  ..+..+|.+++..|++++|..+|+  .+++..|+...  .++.+....++.+.+.+.+..++
T Consensus       324 ~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l  397 (409)
T TIGR00540       324 KQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSL  397 (409)
T ss_pred             HHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            9999999999  889999999999999999999999  68888887654  44555677787777777666543

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=98.24  E-value=1.8e-05  Score=77.08  Aligned_cols=141  Identities=18%  Similarity=0.118  Sum_probs=110.3

Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcCCHHHHHHHHHhh--CcCCcC-------------------------
Q 019586            4 NNYIEAEDAYRRALSIAPDNNKMC-NLGICLMKQGRIGEAKETLRRV--KPAVAD-------------------------   55 (338)
Q Consensus         4 g~~eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k~--~p~~~d-------------------------   55 (338)
                      .+.++|++.|-..++.+|...+++ .||+.|++.|..|.||...+.+  .|+.+.                         
T Consensus        49 ~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE~  128 (389)
T COG2956          49 NQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAED  128 (389)
T ss_pred             cCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHHH
Confidence            456889999999999999888877 9999999999999999888773  333332                         


Q ss_pred             ------------------------CCCCHHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHHCCCHHHHHHHHHHHHc
Q 019586           56 ------------------------GPRGVDSHLKAYERAQQMLKDLE-----SEMMNKGGDRVEQSRLFDAFLGSSSIWQ  106 (338)
Q Consensus        56 ------------------------~lg~~deAi~~yekAL~l~Pd~~-----~a~~nLG~~l~~lGr~~eAi~~yekALk  106 (338)
                                              .-.+|++|+...++...+.++.-     ..|--|+..+....+++.|+..+.+|++
T Consensus       129 ~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlq  208 (389)
T COG2956         129 IFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQ  208 (389)
T ss_pred             HHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHh
Confidence                                    13478888888888888877643     3355578888888888888888888888


Q ss_pred             cCCCCcc---cccchhhhcCccHHHHHhhhhcccCCChhhh
Q 019586          107 PQPCKDH---ILPTTNAIKTRDDFADENIDSNVDVNPIVLS  144 (338)
Q Consensus       107 l~P~~~~---~l~~l~~~~~~~~~A~e~~~~al~~~P~~~~  144 (338)
                      .+|.+..   +++.+...+|..+.|.+.+...+..||...+
T Consensus       209 a~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~  249 (389)
T COG2956         209 ADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLS  249 (389)
T ss_pred             hCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHH
Confidence            8888765   6667777888888888888888888887665

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.24  E-value=1.1e-05  Score=78.86  Aligned_cols=138  Identities=15%  Similarity=0.050  Sum_probs=79.3

Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcCCHHHHHHHHHhhCcC---CcC----------CCCCHHHHHHHHHH
Q 019586            4 NNYIEAEDAYRRALSIAPDNNKMC-NLGICLMKQGRIGEAKETLRRVKPA---VAD----------GPRGVDSHLKAYER   69 (338)
Q Consensus         4 g~~eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k~~p~---~~d----------~lg~~deAi~~yek   69 (338)
                      +++++|.++|+.+++++|.+.++. .+|.-|..-++.+-|+.+|+++..-   .++          ..+++|-++.+|++
T Consensus       304 ~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D~~L~sf~R  383 (478)
T KOG1129|consen  304 EQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQIDLVLPSFQR  383 (478)
T ss_pred             HhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcchhhhHHHHHH
Confidence            456666666666666666666644 5555555666666666666663321   111          13466666666666


Q ss_pred             HHHhCC--C-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCcccccc---hhhhcCccHHHHHhhhhcccCCCh
Q 019586           70 AQQMLK--D-LESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDHILPT---TNAIKTRDDFADENIDSNVDVNPI  141 (338)
Q Consensus        70 AL~l~P--d-~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~~l~~---l~~~~~~~~~A~e~~~~al~~~P~  141 (338)
                      |+..--  + -+++|||+|.+....|++.-|.+||+-+|.-+|++.+.+.+   +..+.|.-..|...+..+-.+.|.
T Consensus       384 Alstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P~  461 (478)
T KOG1129|consen  384 ALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSVMPD  461 (478)
T ss_pred             HHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCcc
Confidence            665432  2 23556666666666666666666666666666666653332   245555555566555555555554

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=98.24  E-value=3.4e-06  Score=84.14  Aligned_cols=107  Identities=14%  Similarity=0.129  Sum_probs=94.0

Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHH-------------HHHHHHHHcCCHHHHHHHHHhhCcCCcC---------------
Q 019586            4 NNYIEAEDAYRRALSIAPDNNKMC-------------NLGICLMKQGRIGEAKETLRRVKPAVAD---------------   55 (338)
Q Consensus         4 g~~eeAi~~y~kALeldPd~a~a~-------------nLG~~y~~~G~~dEAi~~~~k~~p~~~d---------------   55 (338)
                      .+.+.|+..|++++.++|++.+..             ..|+-..+.|+|..|.+.|..++..+|+               
T Consensus       217 ~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v  296 (486)
T KOG0550|consen  217 DNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALV  296 (486)
T ss_pred             cchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhh
Confidence            467899999999999999887622             7888899999999999999995444443               


Q ss_pred             --CCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCC
Q 019586           56 --GPRGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPC  110 (338)
Q Consensus        56 --~lg~~deAi~~yekAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~  110 (338)
                        .+|+..+|+...+.|+.|+|.+..+|...|.+++.+++|++|++.|+++++..-.
T Consensus       297 ~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV~d~~~a~q~~~s  353 (486)
T KOG0550|consen  297 NIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLEKD  353 (486)
T ss_pred             hcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence              2889999999999999999999999999999999999999999999999988766

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=98.24  E-value=1e-05  Score=64.81  Aligned_cols=95  Identities=12%  Similarity=0.090  Sum_probs=68.5

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHhhCcCCcCCCCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHCCCHHHHHHHHH
Q 019586           26 MCNLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDL---ESEMMNKGGDRVEQSRLFDAFLGSS  102 (338)
Q Consensus        26 a~nLG~~y~~~G~~dEAi~~~~k~~p~~~d~lg~~deAi~~yekAL~l~Pd~---~~a~~nLG~~l~~lGr~~eAi~~ye  102 (338)
                      .+.+|..+..+|++                     ++|+..|+++++..|++   +.+++.+|.++...|++++|+.+|+
T Consensus         5 ~~~~~~~~~~~~~~---------------------~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~   63 (119)
T TIGR02795         5 YYDAALLVLKAGDY---------------------ADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFL   63 (119)
T ss_pred             HHHHHHHHHHcCCH---------------------HHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHH
Confidence            45888888999888                     55555566688888876   5789999999999999999999999


Q ss_pred             HHHccCCCCcc------cccchhhhcCccHHHHHhhhhcccCCCh
Q 019586          103 SIWQPQPCKDH------ILPTTNAIKTRDDFADENIDSNVDVNPI  141 (338)
Q Consensus       103 kALkl~P~~~~------~l~~l~~~~~~~~~A~e~~~~al~~~P~  141 (338)
                      +++...|.+..      .++.+....+..+.+...+...+...|.
T Consensus        64 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~  108 (119)
T TIGR02795        64 AVVKKYPKSPKAPDALLKLGMSLQELGDKEKAKATLQQVIKRYPG  108 (119)
T ss_pred             HHHHHCCCCCcccHHHHHHHHHHHHhCChHHHHHHHHHHHHHCcC
Confidence            99999998643      1112233445555555555555444443

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=98.23  E-value=8.7e-06  Score=71.61  Aligned_cols=57  Identities=16%  Similarity=0.065  Sum_probs=52.3

Q ss_pred             CCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCcc
Q 019586           57 PRGVDSHLKAYERAQQMLKDL---ESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDH  113 (338)
Q Consensus        57 lg~~deAi~~yekAL~l~Pd~---~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~  113 (338)
                      .|++++|+.+|++++++.|+.   ..+++++|.++..+|++++|+.+|++++.+.|.+..
T Consensus        48 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~  107 (172)
T PRK02603         48 DGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPS  107 (172)
T ss_pred             cCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHH
Confidence            589999999999999988764   468999999999999999999999999999998765

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=98.22  E-value=4e-06  Score=82.25  Aligned_cols=121  Identities=17%  Similarity=0.174  Sum_probs=91.0

Q ss_pred             CCCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcCCHHHHHHHHHhhCcCCcCCCCCHHHHHHHHHHHHHhCCCCHHHH
Q 019586            3 QNNYIEAEDAYRRALSIAPDNNKMC-NLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDLESEM   81 (338)
Q Consensus         3 ~g~~eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k~~p~~~d~lg~~deAi~~yekAL~l~Pd~~~a~   81 (338)
                      .|++..|+..|..|++.+|++..++ ..|.+|..+|+-                     ..|+..+.+.|++.||+..+.
T Consensus        51 ~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGks---------------------k~al~Dl~rVlelKpDF~~AR  109 (504)
T KOG0624|consen   51 RGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKS---------------------KAALQDLSRVLELKPDFMAAR  109 (504)
T ss_pred             hhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCC---------------------ccchhhHHHHHhcCccHHHHH
Confidence            3566677777777777777666644 777777777666                     677888888999999999999


Q ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHccCCCCcc---cccch---------------hhhcCccHHHHHhhhhcccCCChhh
Q 019586           82 MNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDH---ILPTT---------------NAIKTRDDFADENIDSNVDVNPIVL  143 (338)
Q Consensus        82 ~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~---~l~~l---------------~~~~~~~~~A~e~~~~al~~~P~~~  143 (338)
                      ...|.+++++|.+++|+..|...|+-+|.+..   ....+               ....|.+.-+++.+..-+.+.|...
T Consensus       110 iQRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda  189 (504)
T KOG0624|consen  110 IQRGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDA  189 (504)
T ss_pred             HHhchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchh
Confidence            99999999999999999999999999997654   11111               2345566667777777777777654


Q ss_pred             h
Q 019586          144 S  144 (338)
Q Consensus       144 ~  144 (338)
                      +
T Consensus       190 ~  190 (504)
T KOG0624|consen  190 S  190 (504)
T ss_pred             H
Confidence            4

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=98.20  E-value=1.1e-05  Score=70.55  Aligned_cols=84  Identities=17%  Similarity=-0.003  Sum_probs=64.5

Q ss_pred             HHHHHHHHcCCHHHHHHHHHhhCcCCcCCCCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHCCCHHHHHHHHHHH
Q 019586           28 NLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDL---ESEMMNKGGDRVEQSRLFDAFLGSSSI  104 (338)
Q Consensus        28 nLG~~y~~~G~~dEAi~~~~k~~p~~~d~lg~~deAi~~yekAL~l~Pd~---~~a~~nLG~~l~~lGr~~eAi~~yekA  104 (338)
                      .++.++...+.-.+|..++....  .....|++++|+..|++|+.+.|+.   +.+|.++|.++...|++++|+.+|+++
T Consensus        21 ~l~~~~~~~~~~~~a~~~~~~g~--~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~A   98 (168)
T CHL00033         21 ILLRILPTTSGEKEAFTYYRDGM--SAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQA   98 (168)
T ss_pred             hhhHhccCCchhHHHHHHHHHHH--HHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            55555555555555554444411  1113588999999999999998763   468999999999999999999999999


Q ss_pred             HccCCCCcc
Q 019586          105 WQPQPCKDH  113 (338)
Q Consensus       105 Lkl~P~~~~  113 (338)
                      +.++|....
T Consensus        99 l~~~~~~~~  107 (168)
T CHL00033         99 LERNPFLPQ  107 (168)
T ss_pred             HHhCcCcHH
Confidence            999998766

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=98.20  E-value=1.1e-05  Score=77.45  Aligned_cols=138  Identities=10%  Similarity=-0.109  Sum_probs=107.2

Q ss_pred             CCCHHHHHHHHHHHHHhCCCCHH----HHHHHHHHHHcCCHHHHHHHHHhh---CcCCcC-------------CCCCHHH
Q 019586            3 QNNYIEAEDAYRRALSIAPDNNK----MCNLGICLMKQGRIGEAKETLRRV---KPAVAD-------------GPRGVDS   62 (338)
Q Consensus         3 ~g~~eeAi~~y~kALeldPd~a~----a~nLG~~y~~~G~~dEAi~~~~k~---~p~~~d-------------~lg~~de   62 (338)
                      .|++++|...|.++....|.+..    .+..|.++...|++++|+..++++   .|.+..             ..+....
T Consensus        19 ~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~~~~~~~~~~~~~~~~~   98 (355)
T cd05804          19 GGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALKLHLGAFGLGDFSGMRDH   98 (355)
T ss_pred             cCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHhHHHHHhcccccCchh
Confidence            46788889999999998886544    227899999999999999999993   444431             1344555


Q ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCcc---cccchhhhcCccHHHHHhhhhcccCC
Q 019586           63 HLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDH---ILPTTNAIKTRDDFADENIDSNVDVN  139 (338)
Q Consensus        63 Ai~~yekAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~---~l~~l~~~~~~~~~A~e~~~~al~~~  139 (338)
                      +...+.......|....++..+|.++..+|++++|+..++++++++|.++.   .++.+....++.+.+...+...+...
T Consensus        99 ~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~  178 (355)
T cd05804          99 VARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTW  178 (355)
T ss_pred             HHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhcc
Confidence            555555544566777788889999999999999999999999999999876   33444667888888988888887766


Q ss_pred             C
Q 019586          140 P  140 (338)
Q Consensus       140 P  140 (338)
                      |
T Consensus       179 ~  179 (355)
T cd05804         179 D  179 (355)
T ss_pred             C
Confidence            5

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=98.18  E-value=1.5e-05  Score=80.71  Aligned_cols=104  Identities=15%  Similarity=0.095  Sum_probs=63.8

Q ss_pred             CCCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcCCHHHHHHHHHhhCcCCcC-------------CCCCHHHHHHHHH
Q 019586            3 QNNYIEAEDAYRRALSIAPDNNKMC-NLGICLMKQGRIGEAKETLRRVKPAVAD-------------GPRGVDSHLKAYE   68 (338)
Q Consensus         3 ~g~~eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k~~p~~~d-------------~lg~~deAi~~ye   68 (338)
                      .|++++|+..++..++..|+++.++ -.|.++...++..+|++.++++...+|.             ..|++.+|+..+.
T Consensus       319 ~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~eai~~L~  398 (484)
T COG4783         319 AGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEAIRILN  398 (484)
T ss_pred             hcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHHHHHHHH
Confidence            4667777777777777778777766 7777788888876666666663333333             1445555555555


Q ss_pred             HHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHc
Q 019586           69 RAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQ  106 (338)
Q Consensus        69 kAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALk  106 (338)
                      +.+.-+|+++..|..|+.+|-.+|+..+|...+-....
T Consensus       399 ~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~  436 (484)
T COG4783         399 RYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEGYA  436 (484)
T ss_pred             HHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHHHH
Confidence            55555555555555555555555555555555544433

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=98.18  E-value=5.2e-06  Score=89.47  Aligned_cols=116  Identities=18%  Similarity=0.235  Sum_probs=100.9

Q ss_pred             CCCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcCCHHHHHHHHHhhCc---CCcCC----------CCCHHHHHHHHH
Q 019586            3 QNNYIEAEDAYRRALSIAPDNNKMC-NLGICLMKQGRIGEAKETLRRVKP---AVADG----------PRGVDSHLKAYE   68 (338)
Q Consensus         3 ~g~~eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k~~p---~~~d~----------lg~~deAi~~ye   68 (338)
                      .+.++.|+.+|.++|..+|.+..+- .+|.|+...|+|.+|+..|.++..   .+++.          +|+|-.|++.|+
T Consensus       625 kk~~~KAlq~y~kvL~~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~~AIqmYe  704 (1018)
T KOG2002|consen  625 KKHQEKALQLYGKVLRNDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQYRLAIQMYE  704 (1018)
T ss_pred             HHHHHHHHHHHHHHHhcCcchhhhccchhhhhhhccCchHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHHHHHHHHHH
Confidence            4568999999999999999988755 999999999999999999999433   34442          789999999999


Q ss_pred             HHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCcccccch
Q 019586           69 RAQQML--KDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDHILPTT  118 (338)
Q Consensus        69 kAL~l~--Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~~l~~l  118 (338)
                      .+++.-  .+...++..||.++++.|++.+|..+...|+.+.|.++.+..++
T Consensus       705 ~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~  756 (1018)
T KOG2002|consen  705 NCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTSVKFNL  756 (1018)
T ss_pred             HHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchHHhHH
Confidence            999864  46789999999999999999999999999999999998855443

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=98.14  E-value=7.3e-06  Score=84.65  Aligned_cols=136  Identities=14%  Similarity=0.037  Sum_probs=104.1

Q ss_pred             CCCCHHHHHHHHHHHHHh--------CCCCHHHH-HHHHHHHHcCCHHHHHHHHHhhC--------cCCcC---------
Q 019586            2 QQNNYIEAEDAYRRALSI--------APDNNKMC-NLGICLMKQGRIGEAKETLRRVK--------PAVAD---------   55 (338)
Q Consensus         2 q~g~~eeAi~~y~kALel--------dPd~a~a~-nLG~~y~~~G~~dEAi~~~~k~~--------p~~~d---------   55 (338)
                      .+|+|+.|+..|++|+.+        .|.-.... ++|.+|+.+++|.+|+..|+++.        +.++.         
T Consensus       211 ~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa  290 (508)
T KOG1840|consen  211 VQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLA  290 (508)
T ss_pred             HhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence            479999999999999998        44444455 69999999999999999999932        22222         


Q ss_pred             ----CCCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCC---Ccc-------
Q 019586           56 ----GPRGVDSHLKAYERAQQML--------KDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPC---KDH-------  113 (338)
Q Consensus        56 ----~lg~~deAi~~yekAL~l~--------Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~---~~~-------  113 (338)
                          ..|++++|..++++|++|-        |+.+..+.+++.++..++++++|+..|++++++--+   ..+       
T Consensus       291 ~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~  370 (508)
T KOG1840|consen  291 VLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIY  370 (508)
T ss_pred             HHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHH
Confidence                3789999999999999874        445577888999999999999999999998876431   111       


Q ss_pred             -cccchhhhcCccHHHHHhhhhccc
Q 019586          114 -ILPTTNAIKTRDDFADENIDSNVD  137 (338)
Q Consensus       114 -~l~~l~~~~~~~~~A~e~~~~al~  137 (338)
                       .++.+....|+...|.+.+..++.
T Consensus       371 ~nl~~l~~~~gk~~ea~~~~k~ai~  395 (508)
T KOG1840|consen  371 ANLAELYLKMGKYKEAEELYKKAIQ  395 (508)
T ss_pred             HHHHHHHHHhcchhHHHHHHHHHHH
Confidence             222235677777777777777653

>PRK14574 hmsH outer membrane protein; Provisional

Probab=98.13  E-value=3.5e-05  Score=83.98  Aligned_cols=162  Identities=13%  Similarity=0.103  Sum_probs=116.6

Q ss_pred             HHHHHHhCCCCHH-HHHHHHHHHHcCCHHHHHHHHHhhC---cCCc-C---------CCCCHHHHHHHHHHHHHhCCCCH
Q 019586           13 YRRALSIAPDNNK-MCNLGICLMKQGRIGEAKETLRRVK---PAVA-D---------GPRGVDSHLKAYERAQQMLKDLE   78 (338)
Q Consensus        13 y~kALeldPd~a~-a~nLG~~y~~~G~~dEAi~~~~k~~---p~~~-d---------~lg~~deAi~~yekAL~l~Pd~~   78 (338)
                      |--..-+.|.++. .|..+.+..++|++++|+..|+++.   |.++ .         ..|+.++|+.++++++.-.|...
T Consensus        23 ~~~~~~~~p~~~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~~  102 (822)
T PRK14574         23 FISGFVVNPAMADTQYDSLIIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNISS  102 (822)
T ss_pred             HHcccccCccchhHHHHHHHHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCCH
Confidence            3334445788877 5599999999999999999999954   5553 1         37899999999999993333344


Q ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCcccccc---hhhhcCccHHHHHhhhhcccCCChhhhhhhhh------
Q 019586           79 SEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDHILPT---TNAIKTRDDFADENIDSNVDVNPIVLSKHRSV------  149 (338)
Q Consensus        79 ~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~~l~~---l~~~~~~~~~A~e~~~~al~~~P~~~~K~~~~------  149 (338)
                      ..+..+|.++..+|++++|+..|+++++.+|+++.++..   +....++.+.|.+.+...+..+|.........      
T Consensus       103 ~~llalA~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~l~layL~~~~  182 (822)
T PRK14574        103 RGLASAARAYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNYMTLSYLNRAT  182 (822)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHHHHHHHHHHhc
Confidence            445555889999999999999999999999999874433   25567888888899999888888844431111      


Q ss_pred             ----hhhcchHHHHHHhHhHHHHhhchhh
Q 019586          150 ----KKLFPTANAIKTQENFADENINANI  174 (338)
Q Consensus       150 ----~kl~~~~~ai~~~~~~~e~y~nlg~  174 (338)
                          ..+..+.+++...|+..+.+..+-.
T Consensus       183 ~~~~~AL~~~ekll~~~P~n~e~~~~~~~  211 (822)
T PRK14574        183 DRNYDALQASSEAVRLAPTSEEVLKNHLE  211 (822)
T ss_pred             chHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence                1233334455556666655554443

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=98.11  E-value=9.5e-06  Score=78.96  Aligned_cols=140  Identities=13%  Similarity=0.040  Sum_probs=107.3

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCCCHH-HH-HHHHHHHHcCCHHHHHHHHHhhCcCCcC------------------CCCCH
Q 019586            1 MQQNNYIEAEDAYRRALSIAPDNNK-MC-NLGICLMKQGRIGEAKETLRRVKPAVAD------------------GPRGV   60 (338)
Q Consensus         1 mq~g~~eeAi~~y~kALeldPd~a~-a~-nLG~~y~~~G~~dEAi~~~~k~~p~~~d------------------~lg~~   60 (338)
                      |..|-++.|+..|...+.. |.++. +. .|-.+|....+|++||..-+++.....+                  .-.++
T Consensus       118 m~aGl~DRAE~~f~~L~de-~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~  196 (389)
T COG2956         118 MAAGLLDRAEDIFNQLVDE-GEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDV  196 (389)
T ss_pred             HHhhhhhHHHHHHHHHhcc-hhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhH
Confidence            4567788888888887653 45555 45 8889999999999999998874333322                  24588


Q ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCcc-ccc---chhhhcCccHHHHHhhhhcc
Q 019586           61 DSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDH-ILP---TTNAIKTRDDFADENIDSNV  136 (338)
Q Consensus        61 deAi~~yekAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~-~l~---~l~~~~~~~~~A~e~~~~al  136 (338)
                      +.|+..+.+|++.+|....+-..+|.+++..|+|..|++.|+++++.||..-. ++.   ......|+.+.....+...+
T Consensus       197 d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~  276 (389)
T COG2956         197 DRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAM  276 (389)
T ss_pred             HHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999987543 222   22567777777776666666


Q ss_pred             cCCCh
Q 019586          137 DVNPI  141 (338)
Q Consensus       137 ~~~P~  141 (338)
                      ..++.
T Consensus       277 ~~~~g  281 (389)
T COG2956         277 ETNTG  281 (389)
T ss_pred             HccCC
Confidence            54443

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=98.08  E-value=3.6e-06  Score=55.54  Aligned_cols=34  Identities=15%  Similarity=0.138  Sum_probs=31.9

Q ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHH
Q 019586           66 AYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFL   99 (338)
Q Consensus        66 ~yekAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~   99 (338)
                      +|++||+++|+++.+|++||.+|...|++++|++
T Consensus         1 ~y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~   34 (34)
T PF13431_consen    1 CYKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA   34 (34)
T ss_pred             ChHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence            4899999999999999999999999999999963

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.07  E-value=4.1e-05  Score=76.71  Aligned_cols=112  Identities=15%  Similarity=0.175  Sum_probs=86.9

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcCCHHHHHHHHHhhCcC--Cc---C--------CCCCHHHHHHHH
Q 019586            2 QQNNYIEAEDAYRRALSIAPDNNKMC-NLGICLMKQGRIGEAKETLRRVKPA--VA---D--------GPRGVDSHLKAY   67 (338)
Q Consensus         2 q~g~~eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k~~p~--~~---d--------~lg~~deAi~~y   67 (338)
                      ..|++.+|+..|+++.-+||+....- .+|..+...|+++.-......+...  +.   +        .-.++..|+.+-
T Consensus       244 ~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~~wfV~~~~l~~~K~~~rAL~~~  323 (564)
T KOG1174|consen  244 YNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKYTASHWFVHAQLLYDEKKFERALNFV  323 (564)
T ss_pred             hhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhcchhhhhhhhhhhhhhhhHHHHHHHH
Confidence            35889999999999999999888755 8888888888887766666552211  11   1        134788888888


Q ss_pred             HHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCcc
Q 019586           68 ERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDH  113 (338)
Q Consensus        68 ekAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~  113 (338)
                      +++|+++|++..++...|.++..+||.++|+-+|+.|..+.|..-.
T Consensus       324 eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~  369 (564)
T KOG1174|consen  324 EKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLE  369 (564)
T ss_pred             HHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHH
Confidence            8888888888888888888888888888888888888888886544

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.05  E-value=2.5e-05  Score=73.89  Aligned_cols=111  Identities=16%  Similarity=0.002  Sum_probs=94.2

Q ss_pred             CCCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcCCHHHHHHHHHhhCc---CCcC----------CCCCHHHHHHHHH
Q 019586            3 QNNYIEAEDAYRRALSIAPDNNKMC-NLGICLMKQGRIGEAKETLRRVKP---AVAD----------GPRGVDSHLKAYE   68 (338)
Q Consensus         3 ~g~~eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k~~p---~~~d----------~lg~~deAi~~ye   68 (338)
                      .|.|++|+++|+..++-||.+...+ ..-.++..+|+--+||+.+.....   .+++          ..|++++|.-||+
T Consensus        99 ~~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClE  178 (289)
T KOG3060|consen   99 TGNYKEAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLE  178 (289)
T ss_pred             hhchhhHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHH
Confidence            4789999999999999999999988 444466788998899998877433   3333          3789999999999


Q ss_pred             HHHHhCCCCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHccCCCCcc
Q 019586           69 RAQQMLKDLESEMMNKGGDRVEQSR---LFDAFLGSSSIWQPQPCKDH  113 (338)
Q Consensus        69 kAL~l~Pd~~~a~~nLG~~l~~lGr---~~eAi~~yekALkl~P~~~~  113 (338)
                      +++=+.|-++-.+..+|.+++-+|-   +.-|..+|.++++++|.+..
T Consensus       179 E~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~~r  226 (289)
T KOG3060|consen  179 ELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPKNLR  226 (289)
T ss_pred             HHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHhHH
Confidence            9999999999999999999887764   67899999999999996655

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=98.04  E-value=4.4e-05  Score=66.09  Aligned_cols=84  Identities=18%  Similarity=0.116  Sum_probs=67.8

Q ss_pred             CCCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcCCHHHHHHHHHhhCcCCcCCCCCHHHHHHHHHHHHHhCCCCH---
Q 019586            3 QNNYIEAEDAYRRALSIAPDNNKMC-NLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDLE---   78 (338)
Q Consensus         3 ~g~~eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k~~p~~~d~lg~~deAi~~yekAL~l~Pd~~---   78 (338)
                      .|+.++|++.|.+||.+-|..+.+| |.+.+|..+|+.                     ++|+..+++|+++..+..   
T Consensus        56 ~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~---------------------e~ALdDLn~AleLag~~trta  114 (175)
T KOG4555|consen   56 AGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDD---------------------EEALDDLNKALELAGDQTRTA  114 (175)
T ss_pred             ccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCCh---------------------HHHHHHHHHHHHhcCccchHH
Confidence            4678888888888888888888877 888888888888                     566667777888875543   


Q ss_pred             -HHHHHHHHHHHHCCCHHHHHHHHHHHHcc
Q 019586           79 -SEMMNKGGDRVEQSRLFDAFLGSSSIWQP  107 (338)
Q Consensus        79 -~a~~nLG~~l~~lGr~~eAi~~yekALkl  107 (338)
                       .+|...|.+|..+|+.+.|...|+.+-++
T Consensus       115 cqa~vQRg~lyRl~g~dd~AR~DFe~AA~L  144 (175)
T KOG4555|consen  115 CQAFVQRGLLYRLLGNDDAARADFEAAAQL  144 (175)
T ss_pred             HHHHHHHHHHHHHhCchHHHHHhHHHHHHh
Confidence             56788899999999999999999887654

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=98.03  E-value=5.1e-05  Score=78.73  Aligned_cols=132  Identities=17%  Similarity=0.072  Sum_probs=98.9

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcC-----CHHHHHHHHHhhCcCCcC-------------------
Q 019586            1 MQQNNYIEAEDAYRRALSIAPDNNKMC-NLGICLMKQG-----RIGEAKETLRRVKPAVAD-------------------   55 (338)
Q Consensus         1 mq~g~~eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G-----~~dEAi~~~~k~~p~~~d-------------------   55 (338)
                      +++|++++|...|+..|..+|++..+| .|..|+....     ..+.-...|+.+...+|.                   
T Consensus        49 ~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g~~~~~~~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~  128 (517)
T PF12569_consen   49 LKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEALGLQLQLSDEDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKE  128 (517)
T ss_pred             HHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHhhhcccccccHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHH
Confidence            357999999999999999999999988 6666663332     355556666653222221                   


Q ss_pred             -----------------------------------------------------------------------------CCC
Q 019586           56 -----------------------------------------------------------------------------GPR   58 (338)
Q Consensus        56 -----------------------------------------------------------------------------~lg   58 (338)
                                                                                                   ..|
T Consensus       129 ~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g  208 (517)
T PF12569_consen  129 RLDEYLRPQLRKGVPSLFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLG  208 (517)
T ss_pred             HHHHHHHHHHhcCCchHHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhC
Confidence                                                                                         157


Q ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCcccccch---hhhcCccHHHHHhh
Q 019586           59 GVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDHILPTT---NAIKTRDDFADENI  132 (338)
Q Consensus        59 ~~deAi~~yekAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~~l~~l---~~~~~~~~~A~e~~  132 (338)
                      ++++|+.+.++||+..|..++.|+..|.+|.+.|++.+|..+++.|..+|+.+--+-...   ..+-++.+.|.+.+
T Consensus       209 ~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~  285 (517)
T PF12569_consen  209 DYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTA  285 (517)
T ss_pred             CHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999876532221   23444445554433

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=98.00  E-value=4e-05  Score=66.70  Aligned_cols=88  Identities=16%  Similarity=0.172  Sum_probs=62.0

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHhhCcCCcCC----------------CCCHHHHHHHHHHHHHhCCCCH---HHHHHHHH
Q 019586           26 MCNLGICLMKQGRIGEAKETLRRVKPAVADG----------------PRGVDSHLKAYERAQQMLKDLE---SEMMNKGG   86 (338)
Q Consensus        26 a~nLG~~y~~~G~~dEAi~~~~k~~p~~~d~----------------lg~~deAi~~yekAL~l~Pd~~---~a~~nLG~   86 (338)
                      +|+-|......|+|++|++.|+.+...+|-.                .+++++|+..+++-|+++|.++   -+++..|.
T Consensus        13 ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL   92 (142)
T PF13512_consen   13 LYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGL   92 (142)
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHH
Confidence            3355555555555555555555544444331                3455777778888999998876   66888999


Q ss_pred             HHHHCCC---------------HHHHHHHHHHHHccCCCCcc
Q 019586           87 DRVEQSR---------------LFDAFLGSSSIWQPQPCKDH  113 (338)
Q Consensus        87 ~l~~lGr---------------~~eAi~~yekALkl~P~~~~  113 (338)
                      +++.+..               ..+|+..|++.++.-|++..
T Consensus        93 ~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~y  134 (142)
T PF13512_consen   93 SYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSEY  134 (142)
T ss_pred             HHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCChh
Confidence            9999877               88999999999999988754

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=97.99  E-value=0.00011  Score=73.36  Aligned_cols=191  Identities=8%  Similarity=-0.032  Sum_probs=108.9

Q ss_pred             CCCHHHHHHHHHHHHHhCCCCHH-HH-HHHHHHHHcCCHHHHHHHHHhhCcCCcC--------------CCCCHHHHHHH
Q 019586            3 QNNYIEAEDAYRRALSIAPDNNK-MC-NLGICLMKQGRIGEAKETLRRVKPAVAD--------------GPRGVDSHLKA   66 (338)
Q Consensus         3 ~g~~eeAi~~y~kALeldPd~a~-a~-nLG~~y~~~G~~dEAi~~~~k~~p~~~d--------------~lg~~deAi~~   66 (338)
                      .|+|++|++...++-+..+ ++. .+ ..+.+...+|++++|..+|.++....++              ..|++++|+..
T Consensus        97 eGd~~~A~k~l~~~~~~~~-~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~  175 (398)
T PRK10747         97 EGDYQQVEKLMTRNADHAE-QPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARHG  175 (398)
T ss_pred             CCCHHHHHHHHHHHHhccc-chHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHH
Confidence            4777777766666544322 233 33 3344447777777777777774433332              16777777777


Q ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHc----------------------------------------
Q 019586           67 YERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQ----------------------------------------  106 (338)
Q Consensus        67 yekAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALk----------------------------------------  106 (338)
                      ++++++..|+++.++..++.+|...|++++|+..+.+..+                                        
T Consensus       176 l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~l  255 (398)
T PRK10747        176 VDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQ  255 (398)
T ss_pred             HHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhC
Confidence            7777777777777777777777777777777733332221                                        


Q ss_pred             --cCCCCcc---cccchhhhcCccHHHHHhhhhcccCCChhh--hhhhhhhhhcchHH-------HHHHhHhHHHHhhch
Q 019586          107 --PQPCKDH---ILPTTNAIKTRDDFADENIDSNVDVNPIVL--SKHRSVKKLFPTAN-------AIKTQENFADENINA  172 (338)
Q Consensus       107 --l~P~~~~---~l~~l~~~~~~~~~A~e~~~~al~~~P~~~--~K~~~~~kl~~~~~-------ai~~~~~~~e~y~nl  172 (338)
                        ..|+++.   .++......++.+.|...+...+...|...  .-...+ ......+       ..+..|+-.+.+.-+
T Consensus       256 p~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~~~~~~l~~l~~~l-~~~~~~~al~~~e~~lk~~P~~~~l~l~l  334 (398)
T PRK10747        256 SRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKRQYDERLVLLIPRL-KTNNPEQLEKVLRQQIKQHGDTPLLWSTL  334 (398)
T ss_pred             CHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHhhc-cCCChHHHHHHHHHHHhhCCCCHHHHHHH
Confidence              1222333   222234566666667666666665433211  111111 0122222       334455555555555


Q ss_pred             hhhhhHhhhhhhhhhhhhccccccCCC
Q 019586          173 NIVVNQTVLAQQRGVQQLAPFGNSWNI  199 (338)
Q Consensus       173 g~~~~~~~~~d~r~~~~~~~~~~~~~~  199 (338)
                      |.    ..+.+++|.++...+-..+.+
T Consensus       335 gr----l~~~~~~~~~A~~~le~al~~  357 (398)
T PRK10747        335 GQ----LLMKHGEWQEASLAFRAALKQ  357 (398)
T ss_pred             HH----HHHHCCCHHHHHHHHHHHHhc
Confidence            65    567788888887777777766

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=97.99  E-value=4.3e-05  Score=80.59  Aligned_cols=171  Identities=14%  Similarity=0.042  Sum_probs=123.4

Q ss_pred             CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHcCCHHHHHHHHHhhCcC--C-----cCCCCCHHHHHHHHHHHHHhCC
Q 019586            3 QNNYIEAEDAYRRALSIAPDNNKMCNLGICLMKQGRIGEAKETLRRVKPA--V-----ADGPRGVDSHLKAYERAQQMLK   75 (338)
Q Consensus         3 ~g~~eeAi~~y~kALeldPd~a~a~nLG~~y~~~G~~dEAi~~~~k~~p~--~-----~d~lg~~deAi~~yekAL~l~P   75 (338)
                      .|+..+|....++-++.+|+...++.||.+.....=|+.|.+++...+..  .     +-..+++.++.++++..++++|
T Consensus       437 lg~~~kaeei~~q~lek~~d~~lyc~LGDv~~d~s~yEkawElsn~~sarA~r~~~~~~~~~~~fs~~~~hle~sl~~np  516 (777)
T KOG1128|consen  437 LGQHGKAEEINRQELEKDPDPRLYCLLGDVLHDPSLYEKAWELSNYISARAQRSLALLILSNKDFSEADKHLERSLEINP  516 (777)
T ss_pred             hcccchHHHHHHHHhcCCCcchhHHHhhhhccChHHHHHHHHHhhhhhHHHHHhhccccccchhHHHHHHHHHHHhhcCc
Confidence            46777888888888884444444559999998888899999998884332  1     1235799999999999999999


Q ss_pred             CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCcccccch---hhhcCccHHHHHhhhhcccCC--Chhhh--hhhh
Q 019586           76 DLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDHILPTT---NAIKTRDDFADENIDSNVDVN--PIVLS--KHRS  148 (338)
Q Consensus        76 d~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~~l~~l---~~~~~~~~~A~e~~~~al~~~--P~~~~--K~~~  148 (338)
                      -....|+++|.+..+.+++..|..+|.+++.++|++.+...++   ..+.+....+...+..++.-|  |....  --.-
T Consensus       517 lq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlv  596 (777)
T KOG1128|consen  517 LQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLV  596 (777)
T ss_pred             cchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhh
Confidence            9999999999999999999999999999999999999855544   445555555555555555433  11111  1122


Q ss_pred             hhhhcchHHHHHHhHhHHHHhhchh
Q 019586          149 VKKLFPTANAIKTQENFADENINAN  173 (338)
Q Consensus       149 ~~kl~~~~~ai~~~~~~~e~y~nlg  173 (338)
                      ..++.....++...+...+...+..
T Consensus       597 svdvge~eda~~A~~rll~~~~~~~  621 (777)
T KOG1128|consen  597 SVDVGEFEDAIKAYHRLLDLRKKYK  621 (777)
T ss_pred             hhhcccHHHHHHHHHHHHHhhhhcc
Confidence            3356666667777666665555444

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=97.97  E-value=0.00015  Score=68.07  Aligned_cols=112  Identities=9%  Similarity=0.072  Sum_probs=91.4

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCCHHH----HHHHHHHHHcCCHHHHHHHHHh---hCcCCcCC-------------CC---
Q 019586            2 QQNNYIEAEDAYRRALSIAPDNNKM----CNLGICLMKQGRIGEAKETLRR---VKPAVADG-------------PR---   58 (338)
Q Consensus         2 q~g~~eeAi~~y~kALeldPd~a~a----~nLG~~y~~~G~~dEAi~~~~k---~~p~~~d~-------------lg---   58 (338)
                      +.|+|++|+..|++++...|.....    +.+|.+|.++++|++|+..|++   ..|.++..             ++   
T Consensus        44 ~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~~~~~~~~  123 (243)
T PRK10866         44 QDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTNMALDDSA  123 (243)
T ss_pred             HCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhhhhcchhh
Confidence            4699999999999999999988774    4999999999999999999999   44555441             11   


Q ss_pred             ---------------CHHHHHHHHHHHHHhCCCCHHH-----------------HHHHHHHHHHCCCHHHHHHHHHHHHc
Q 019586           59 ---------------GVDSHLKAYERAQQMLKDLESE-----------------MMNKGGDRVEQSRLFDAFLGSSSIWQ  106 (338)
Q Consensus        59 ---------------~~deAi~~yekAL~l~Pd~~~a-----------------~~nLG~~l~~lGr~~eAi~~yekALk  106 (338)
                                     ...+|+..|++.++.-|+..-+                 -+..|..|.+.|+|..|+.-++.+++
T Consensus       124 ~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~  203 (243)
T PRK10866        124 LQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYELSVAEYYTKRGAYVAVVNRVEQMLR  203 (243)
T ss_pred             hhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHH
Confidence                           1357889999999999986521                 14467789999999999999999999


Q ss_pred             cCCCCcc
Q 019586          107 PQPCKDH  113 (338)
Q Consensus       107 l~P~~~~  113 (338)
                      --|+.+.
T Consensus       204 ~Yp~t~~  210 (243)
T PRK10866        204 DYPDTQA  210 (243)
T ss_pred             HCCCCch
Confidence            9998765

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=97.96  E-value=0.00025  Score=74.46  Aligned_cols=174  Identities=12%  Similarity=0.020  Sum_probs=129.7

Q ss_pred             CCCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcCCHHHHHHHHHhhCcCCcC------------CCCCHHHHHHHHHH
Q 019586            3 QNNYIEAEDAYRRALSIAPDNNKMC-NLGICLMKQGRIGEAKETLRRVKPAVAD------------GPRGVDSHLKAYER   69 (338)
Q Consensus         3 ~g~~eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k~~p~~~d------------~lg~~deAi~~yek   69 (338)
                      .|+..+|...+.+|++.+|++-+.| .---+.....+++.|...|.++....+.            .++..++|+..+++
T Consensus       597 agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~sgTeRv~mKs~~~er~ld~~eeA~rllEe  676 (913)
T KOG0495|consen  597 AGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSISGTERVWMKSANLERYLDNVEEALRLLEE  676 (913)
T ss_pred             cCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCCcchhhHHHhHHHHHhhhHHHHHHHHHH
Confidence            4788899999999999999988877 3344556778899999999884433322            38899999999999


Q ss_pred             HHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCcc---cccchhhhcCccHHHHHhhhhcccCCChhhhhh
Q 019586           70 AQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDH---ILPTTNAIKTRDDFADENIDSNVDVNPIVLSKH  146 (338)
Q Consensus        70 AL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~---~l~~l~~~~~~~~~A~e~~~~al~~~P~~~~K~  146 (338)
                      ||+.-|++...|+.+|.++..+++.+.|...|...++.-|....   .++.+.-+.+..--|...++.+...||....-.
T Consensus       677 ~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk~~~lw  756 (913)
T KOG0495|consen  677 ALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPKNALLW  756 (913)
T ss_pred             HHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhH
Confidence            99999999999999999999999999999999999999999876   333333445555557778888888888744322


Q ss_pred             ----hhhhhhcchHHHHHHhHhHHHHhhchhhhh
Q 019586          147 ----RSVKKLFPTANAIKTQENFADENINANIVV  176 (338)
Q Consensus       147 ----~~~~kl~~~~~ai~~~~~~~e~y~nlg~~~  176 (338)
                          +.=........|-....+-++-+.+-|++-
T Consensus       757 le~Ir~ElR~gn~~~a~~lmakALQecp~sg~LW  790 (913)
T KOG0495|consen  757 LESIRMELRAGNKEQAELLMAKALQECPSSGLLW  790 (913)
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhH
Confidence                222233333444445555556666666644

>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]

Probab=97.93  E-value=7.3e-06  Score=82.97  Aligned_cols=91  Identities=14%  Similarity=0.190  Sum_probs=85.0

Q ss_pred             CCCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcCCHHHHHHHHHhhCcCCcCCCCCHHHHHHHHHHHHHhCCCCHHHH
Q 019586            3 QNNYIEAEDAYRRALSIAPDNNKMC-NLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDLESEM   81 (338)
Q Consensus         3 ~g~~eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k~~p~~~d~lg~~deAi~~yekAL~l~Pd~~~a~   81 (338)
                      -++|+.|+..|.+||+++|+.+.++ +.+.++.+.+.|                     ..|+..+.+||+++|....+|
T Consensus        17 ~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~---------------------~~Al~Da~kaie~dP~~~K~Y   75 (476)
T KOG0376|consen   17 DKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESF---------------------GGALHDALKAIELDPTYIKAY   75 (476)
T ss_pred             cchHHHHHHHHHHHHhcCCcceeeechhhhhheeechh---------------------hhHHHHHHhhhhcCchhhhee
Confidence            4679999999999999999999988 999999999999                     677777888999999999999


Q ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHccCCCCccc
Q 019586           82 MNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDHI  114 (338)
Q Consensus        82 ~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~~  114 (338)
                      +..|.+...++++.+|+..|++...+.|+.+..
T Consensus        76 ~rrg~a~m~l~~~~~A~~~l~~~~~l~Pnd~~~  108 (476)
T KOG0376|consen   76 VRRGTAVMALGEFKKALLDLEKVKKLAPNDPDA  108 (476)
T ss_pred             eeccHHHHhHHHHHHHHHHHHHhhhcCcCcHHH
Confidence            999999999999999999999999999998873

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=97.92  E-value=9.8e-05  Score=74.28  Aligned_cols=100  Identities=13%  Similarity=0.069  Sum_probs=83.6

Q ss_pred             CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHcCCHHHHHHHHHhhCcCCcC-------------CCCCHHHHHHHHHH
Q 019586            3 QNNYIEAEDAYRRALSIAPDNNKMCNLGICLMKQGRIGEAKETLRRVKPAVAD-------------GPRGVDSHLKAYER   69 (338)
Q Consensus         3 ~g~~eeAi~~y~kALeldPd~a~a~nLG~~y~~~G~~dEAi~~~~k~~p~~~d-------------~lg~~deAi~~yek   69 (338)
                      .+++++|+..|++..+.+|+  ...-++.++...++-.+|+..+.+.....+.             ..++++.|+.+.++
T Consensus       182 t~~~~~ai~lle~L~~~~pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~~lAL~iAk~  259 (395)
T PF09295_consen  182 TQRYDEAIELLEKLRERDPE--VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKYELALEIAKK  259 (395)
T ss_pred             cccHHHHHHHHHHHHhcCCc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence            36799999999999998875  2347888888899999999999884443332             37799999999999


Q ss_pred             HHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Q 019586           70 AQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSI  104 (338)
Q Consensus        70 AL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekA  104 (338)
                      |+++.|+.-..|+.|+.+|..+|+++.|+..+..+
T Consensus       260 av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~  294 (395)
T PF09295_consen  260 AVELSPSEFETWYQLAECYIQLGDFENALLALNSC  294 (395)
T ss_pred             HHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence            99999999999999999999999999999877654

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=97.92  E-value=5.5e-05  Score=79.85  Aligned_cols=110  Identities=15%  Similarity=0.112  Sum_probs=76.4

Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcCCHHHHHHHHHhhCcCCcCCCCCHHHHHHHHHHHHHhCCCCHHHHH
Q 019586            4 NNYIEAEDAYRRALSIAPDNNKMC-NLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDLESEMM   82 (338)
Q Consensus         4 g~~eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k~~p~~~d~lg~~deAi~~yekAL~l~Pd~~~a~~   82 (338)
                      ++|+++..+++.+++++|-....| ++|.|..+.+++                     ..|.++|.+++.++|++.++|+
T Consensus       499 ~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~---------------------q~av~aF~rcvtL~Pd~~eaWn  557 (777)
T KOG1128|consen  499 KDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKE---------------------QAAVKAFHRCVTLEPDNAEAWN  557 (777)
T ss_pred             hhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhh---------------------HHHHHHHHHHhhcCCCchhhhh
Confidence            445555555555555555444422 555555555555                     7788888889999999999999


Q ss_pred             HHHHHHHHCCCHHHHHHHHHHHHccCCCCcccccc---hhhhcCccHHHHHhhhh
Q 019586           83 NKGGDRVEQSRLFDAFLGSSSIWQPQPCKDHILPT---TNAIKTRDDFADENIDS  134 (338)
Q Consensus        83 nLG~~l~~lGr~~eAi~~yekALkl~P~~~~~l~~---l~~~~~~~~~A~e~~~~  134 (338)
                      |+..+|...|+..+|..++.+|++.+-.+..+..+   +.-..+..+.+...+..
T Consensus       558 Nls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~r  612 (777)
T KOG1128|consen  558 NLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHR  612 (777)
T ss_pred             hhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHH
Confidence            99999999999999999999999999665553322   23444555555554444

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=97.90  E-value=1.1e-05  Score=53.22  Aligned_cols=33  Identities=30%  Similarity=0.545  Sum_probs=30.5

Q ss_pred             HHHHHHHhCCCCHHHH-HHHHHHHHcCCHHHHHH
Q 019586           12 AYRRALSIAPDNNKMC-NLGICLMKQGRIGEAKE   44 (338)
Q Consensus        12 ~y~kALeldPd~a~a~-nLG~~y~~~G~~dEAi~   44 (338)
                      +|++||+++|+++.+| +||.+|...|++++|++
T Consensus         1 ~y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~   34 (34)
T PF13431_consen    1 CYKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA   34 (34)
T ss_pred             ChHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence            4899999999999988 99999999999999863

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=97.87  E-value=7.8e-05  Score=81.49  Aligned_cols=103  Identities=12%  Similarity=-0.018  Sum_probs=85.5

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcCCHHHHHHHHHhh---CcCCc----------------C------
Q 019586            2 QQNNYIEAEDAYRRALSIAPDNNKMC-NLGICLMKQGRIGEAKETLRRV---KPAVA----------------D------   55 (338)
Q Consensus         2 q~g~~eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k~---~p~~~----------------d------   55 (338)
                      ..+++++|+..++.+++..|+...+| .+|.++...+++.+|...  ++   .+...                .      
T Consensus        43 ~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~~~ve~~~~~i~~~~~~k~Al~  120 (906)
T PRK14720         43 SENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKWAIVEHICDKILLYGENKLALR  120 (906)
T ss_pred             hcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhcccccchhHHHHHHHHHHhhhhhhHHHH
Confidence            46899999999999999999999966 999999999998877666  31   11111                1      


Q ss_pred             -------CCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcc
Q 019586           56 -------GPRGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQP  107 (338)
Q Consensus        56 -------~lg~~deAi~~yekAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl  107 (338)
                             .+|++++|...|+++++++|+++.+++++|..|... ++++|+..+.+|++.
T Consensus       121 ~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~  178 (906)
T PRK14720        121 TLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAITYLKKAIYR  178 (906)
T ss_pred             HHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH
Confidence                   258999999999999999999999999999999988 888888888887765

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=97.86  E-value=4.5e-05  Score=82.68  Aligned_cols=57  Identities=11%  Similarity=0.014  Sum_probs=53.7

Q ss_pred             CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCcc
Q 019586           57 PRGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDH  113 (338)
Q Consensus        57 lg~~deAi~~yekAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~  113 (338)
                      .+++..|+..|+.|++.+|.+...|..+|.+|...|+|.-|+..|.+|..++|.+.-
T Consensus       575 a~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y  631 (1238)
T KOG1127|consen  575 AHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKY  631 (1238)
T ss_pred             ccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHH
Confidence            468999999999999999999999999999999999999999999999999998643

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=97.85  E-value=8.6e-05  Score=75.16  Aligned_cols=113  Identities=12%  Similarity=0.007  Sum_probs=59.9

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCCCHH--HHHHHHHHHHcC--CHHHHHHHHHhhCcCC---c----------CCCCCHHHH
Q 019586            1 MQQNNYIEAEDAYRRALSIAPDNNK--MCNLGICLMKQG--RIGEAKETLRRVKPAV---A----------DGPRGVDSH   63 (338)
Q Consensus         1 mq~g~~eeAi~~y~kALeldPd~a~--a~nLG~~y~~~G--~~dEAi~~~~k~~p~~---~----------d~lg~~deA   63 (338)
                      |+.|+++.|++.+.-.-+.+.....  +.||...+..+|  ++..|..+-..+...+   +          -.-|++++|
T Consensus       430 lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka  509 (840)
T KOG2003|consen  430 LKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKA  509 (840)
T ss_pred             HhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHH
Confidence            3456666666665444333332222  226655555533  4555555554421111   0          024566666


Q ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCcc
Q 019586           64 LKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDH  113 (338)
Q Consensus        64 i~~yekAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~  113 (338)
                      ...|++|+.-+....++++|.|..+..+|++++|+.||-+.-.+--++.+
T Consensus       510 ~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~il~nn~e  559 (840)
T KOG2003|consen  510 AEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLNNAE  559 (840)
T ss_pred             HHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHH
Confidence            66666666666666666666666666666666666666554444444444

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=97.84  E-value=2.1e-05  Score=50.75  Aligned_cols=34  Identities=12%  Similarity=0.053  Sum_probs=30.8

Q ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCC
Q 019586           78 ESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCK  111 (338)
Q Consensus        78 ~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~  111 (338)
                      +.+|+++|.+|..+|++++|+.+|+++++++|++
T Consensus         1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~   34 (34)
T PF00515_consen    1 AEAYYNLGNAYFQLGDYEEALEYYQRALELDPDN   34 (34)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred             CHHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence            4689999999999999999999999999999974

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=97.79  E-value=4.1e-05  Score=48.97  Aligned_cols=34  Identities=9%  Similarity=-0.027  Sum_probs=31.0

Q ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCC
Q 019586           78 ESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCK  111 (338)
Q Consensus        78 ~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~  111 (338)
                      +.+|+.+|.++..+|++++|+.+|+++++++|++
T Consensus         1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~   34 (34)
T PF07719_consen    1 AEAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN   34 (34)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred             CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence            4689999999999999999999999999999975

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=97.78  E-value=0.00019  Score=76.20  Aligned_cols=98  Identities=10%  Similarity=-0.104  Sum_probs=69.3

Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCcccccch---hhhcCccHHHHHhhhh
Q 019586           58 RGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDHILPTT---NAIKTRDDFADENIDS  134 (338)
Q Consensus        58 g~~deAi~~yekAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~~l~~l---~~~~~~~~~A~e~~~~  134 (338)
                      +..++|..|+.+|-.+.|-.+..|+..|.++...|.+.||..+|..|+.++|++..+...+   ....|....+..    
T Consensus       664 ~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~----  739 (799)
T KOG4162|consen  664 GNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLELGSPRLAEK----  739 (799)
T ss_pred             CCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHH----
Confidence            3667777788888888888888888888888888888888888888888888888733222   222332222211    


Q ss_pred             cccCCChhhhhhhhhhhhcchHHHHHHhHhHHHHhhchhhhh
Q 019586          135 NVDVNPIVLSKHRSVKKLFPTANAIKTQENFADENINANIVV  176 (338)
Q Consensus       135 al~~~P~~~~K~~~~~kl~~~~~ai~~~~~~~e~y~nlg~~~  176 (338)
                                       -.-...++...|.+.++++++|-+.
T Consensus       740 -----------------~~~L~dalr~dp~n~eaW~~LG~v~  764 (799)
T KOG4162|consen  740 -----------------RSLLSDALRLDPLNHEAWYYLGEVF  764 (799)
T ss_pred             -----------------HHHHHHHHhhCCCCHHHHHHHHHHH
Confidence                             1122456777888888999998865

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=97.77  E-value=1.7e-05  Score=61.63  Aligned_cols=75  Identities=12%  Similarity=0.076  Sum_probs=55.9

Q ss_pred             CCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCcc---cccchhhhcCccHHHHHh
Q 019586           57 PRGVDSHLKAYERAQQMLKD--LESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDH---ILPTTNAIKTRDDFADEN  131 (338)
Q Consensus        57 lg~~deAi~~yekAL~l~Pd--~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~---~l~~l~~~~~~~~~A~e~  131 (338)
                      .|+++.|+..|+++++..|.  ....++.+|.+|+.+|+|++|+..+++ ++.+|.+..   +++......++.+.|.+.
T Consensus         2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~   80 (84)
T PF12895_consen    2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA   80 (84)
T ss_dssp             TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred             CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence            46789999999999999995  466788899999999999999999999 778776644   223334455555555544


Q ss_pred             h
Q 019586          132 I  132 (338)
Q Consensus       132 ~  132 (338)
                      +
T Consensus        81 l   81 (84)
T PF12895_consen   81 L   81 (84)
T ss_dssp             H
T ss_pred             H
Confidence            3

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=97.71  E-value=0.00017  Score=73.31  Aligned_cols=110  Identities=10%  Similarity=-0.035  Sum_probs=88.8

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHhhC---cCCcC----------CCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC
Q 019586           26 MCNLGICLMKQGRIGEAKETLRRVK---PAVAD----------GPRGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQS   92 (338)
Q Consensus        26 a~nLG~~y~~~G~~dEAi~~~~k~~---p~~~d----------~lg~~deAi~~yekAL~l~Pd~~~a~~nLG~~l~~lG   92 (338)
                      .|..+..+...|++++|...++.+.   |+++.          ..++.++|++.+++++.++|+.+..++++|.+|++.|
T Consensus       309 ~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g  388 (484)
T COG4783         309 QYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGG  388 (484)
T ss_pred             HHHHHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcC
Confidence            4488888899999999999999954   44444          3789999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHccCCCCcccccch---hhhcCccHHHHHhhhhc
Q 019586           93 RLFDAFLGSSSIWQPQPCKDHILPTT---NAIKTRDDFADENIDSN  135 (338)
Q Consensus        93 r~~eAi~~yekALkl~P~~~~~l~~l---~~~~~~~~~A~e~~~~a  135 (338)
                      ++.+|+..+...+.-+|+++..+..+   ....+....+.......
T Consensus       389 ~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~  434 (484)
T COG4783         389 KPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEG  434 (484)
T ss_pred             ChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHH
Confidence            99999999999999999999843332   34445444444444333

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=97.69  E-value=6.8e-05  Score=76.03  Aligned_cols=68  Identities=13%  Similarity=0.098  Sum_probs=59.7

Q ss_pred             hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCcc------cccchhhhcCccHHHHHhhhhcccCCC
Q 019586           73 MLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDH------ILPTTNAIKTRDDFADENIDSNVDVNP  140 (338)
Q Consensus        73 l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~------~l~~l~~~~~~~~~A~e~~~~al~~~P  140 (338)
                      .+|+++.+|+|+|.+|+.+|+|++|+.+|+++++++|+++.      +++......++.+.|.+.+..++...+
T Consensus        70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALelsn  143 (453)
T PLN03098         70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDYN  143 (453)
T ss_pred             CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcc
Confidence            57999999999999999999999999999999999999873      334447788999999999999988633

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=97.66  E-value=0.0002  Score=65.12  Aligned_cols=112  Identities=16%  Similarity=0.181  Sum_probs=77.3

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCCHH----HHHHHHHHHHcCCHHHHHHHHHhhC---cCCcCC------------------
Q 019586            2 QQNNYIEAEDAYRRALSIAPDNNK----MCNLGICLMKQGRIGEAKETLRRVK---PAVADG------------------   56 (338)
Q Consensus         2 q~g~~eeAi~~y~kALeldPd~a~----a~nLG~~y~~~G~~dEAi~~~~k~~---p~~~d~------------------   56 (338)
                      +.|+|.+|+..|++.+...|....    .+.+|.++.+.|+|++|+..|++..   |.++..                  
T Consensus        17 ~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~~~~~~~~   96 (203)
T PF13525_consen   17 QQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSYYKQIPGI   96 (203)
T ss_dssp             HCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHHHHHHHHH
T ss_pred             HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHhCccc
Confidence            578999999999999999887544    3399999999999999988888843   333321                  


Q ss_pred             ------CCCHHHHHHHHHHHHHhCCCCHHH-----------------HHHHHHHHHHCCCHHHHHHHHHHHHccCCCCcc
Q 019586           57 ------PRGVDSHLKAYERAQQMLKDLESE-----------------MMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDH  113 (338)
Q Consensus        57 ------lg~~deAi~~yekAL~l~Pd~~~a-----------------~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~  113 (338)
                            ++...+|+..|+..++.-|+..-+                 -+..|..|.+.|+|..|+..|+.+++--|+...
T Consensus        97 ~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~  176 (203)
T PF13525_consen   97 LRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIARFYYKRGKYKAAIIRFQYVIENYPDTPA  176 (203)
T ss_dssp             H-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-HHHHHHHHHHHHHHSTTSHH
T ss_pred             hhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCCch
Confidence                  123456777888888877775511                 144577788888888888888888887777654

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=97.65  E-value=0.0004  Score=66.18  Aligned_cols=81  Identities=14%  Similarity=0.007  Sum_probs=59.7

Q ss_pred             HHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCcccc------cchhhhcCccHHHHHh
Q 019586           61 DSHLKAYERAQQMLKDL---ESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDHIL------PTTNAIKTRDDFADEN  131 (338)
Q Consensus        61 deAi~~yekAL~l~Pd~---~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~~l------~~l~~~~~~~~~A~e~  131 (338)
                      ++|+..|++.++..|+.   +.+++.+|.+|+..|++++|+.+|+++++..|+++...      +.+....++.+.+...
T Consensus       160 ~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g~~~~A~~~  239 (263)
T PRK10803        160 DDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKGDTAKAKAV  239 (263)
T ss_pred             HHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcCCHHHHHHH
Confidence            66677777799999987   58999999999999999999999999999999876611      2223344555555555


Q ss_pred             hhhcccCCCh
Q 019586          132 IDSNVDVNPI  141 (338)
Q Consensus       132 ~~~al~~~P~  141 (338)
                      +...+...|.
T Consensus       240 ~~~vi~~yP~  249 (263)
T PRK10803        240 YQQVIKKYPG  249 (263)
T ss_pred             HHHHHHHCcC
Confidence            5554444443

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=97.64  E-value=0.00025  Score=67.56  Aligned_cols=107  Identities=12%  Similarity=0.134  Sum_probs=72.2

Q ss_pred             CCCHHHHHHHHHHHHHhCCC--CHH----HH-HHHHHHHHcCCHHHHHHHHHhhCcCCcC-------------------C
Q 019586            3 QNNYIEAEDAYRRALSIAPD--NNK----MC-NLGICLMKQGRIGEAKETLRRVKPAVAD-------------------G   56 (338)
Q Consensus         3 ~g~~eeAi~~y~kALeldPd--~a~----a~-nLG~~y~~~G~~dEAi~~~~k~~p~~~d-------------------~   56 (338)
                      .|+|++|..+|.+|..+.-.  +..    .| +.|.+|.+. ++++|+.+|+++...+..                   .
T Consensus        48 ~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~lA~~ye~  126 (282)
T PF14938_consen   48 AKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAGRFSQAAKCLKELAEIYEE  126 (282)
T ss_dssp             TT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHCC
T ss_pred             HhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHH
Confidence            46788888888888776421  111    33 777777665 888999888884332211                   2


Q ss_pred             C-CCHHHHHHHHHHHHHhC--CCC----HHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCC
Q 019586           57 P-RGVDSHLKAYERAQQML--KDL----ESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPC  110 (338)
Q Consensus        57 l-g~~deAi~~yekAL~l~--Pd~----~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~  110 (338)
                      . +++++|+.+|++|+++-  -+.    ...+.++|.++..+|+|++|+..|+++....-.
T Consensus       127 ~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~  187 (282)
T PF14938_consen  127 QLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLE  187 (282)
T ss_dssp             TT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCC
T ss_pred             HcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhc
Confidence            4 79999999999999873  222    255678899999999999999999998775433

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=97.64  E-value=0.00018  Score=78.68  Aligned_cols=110  Identities=8%  Similarity=0.006  Sum_probs=94.1

Q ss_pred             CCCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcCCHHHHHHHHHhhCcCCcCCCCCHHHHHHHHHHHHHhCCCCHHHH
Q 019586            3 QNNYIEAEDAYRRALSIAPDNNKMC-NLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDLESEM   81 (338)
Q Consensus         3 ~g~~eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k~~p~~~d~lg~~deAi~~yekAL~l~Pd~~~a~   81 (338)
                      .|++++|...|+++++++|+++.+. |+|..|... ++++|+.++.++...+.+.. ++.++..++++.++.+|+..+..
T Consensus       129 ~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~~i~~k-q~~~~~e~W~k~~~~~~~d~d~f  206 (906)
T PRK14720        129 LNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAITYLKKAIYRFIKKK-QYVGIEEIWSKLVHYNSDDFDFF  206 (906)
T ss_pred             cCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHhhh-cchHHHHHHHHHHhcCcccchHH
Confidence            5889999999999999999999977 999999999 99999999999666555433 78889999999999999876552


Q ss_pred             --------HHHH------------HHHHHCCCHHHHHHHHHHHHccCCCCccc
Q 019586           82 --------MNKG------------GDRVEQSRLFDAFLGSSSIWQPQPCKDHI  114 (338)
Q Consensus        82 --------~nLG------------~~l~~lGr~~eAi~~yekALkl~P~~~~~  114 (338)
                              ..+|            ..|.+.++|++++..++.+|+++|.+...
T Consensus       207 ~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a  259 (906)
T PRK14720        207 LRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKA  259 (906)
T ss_pred             HHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhh
Confidence                    2234            67889999999999999999999998763

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.63  E-value=0.00036  Score=66.46  Aligned_cols=89  Identities=18%  Similarity=0.225  Sum_probs=62.0

Q ss_pred             CCHHHHHHHHHHHHHhCCCCHH----HHHHHHHHHHcCCHHHHHHHHHhhCcCCcCCCCCHHHHHHHHHHHHHhCCC---
Q 019586            4 NNYIEAEDAYRRALSIAPDNNK----MCNLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKD---   76 (338)
Q Consensus         4 g~~eeAi~~y~kALeldPd~a~----a~nLG~~y~~~G~~dEAi~~~~k~~p~~~d~lg~~deAi~~yekAL~l~Pd---   76 (338)
                      |+|.+|+..|..-|...|+...    .|=||.++..+|+|                     ++|...|..+++-.|+   
T Consensus       155 gdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y---------------------~~Aa~~f~~~~k~~P~s~K  213 (262)
T COG1729         155 GDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDY---------------------EDAAYIFARVVKDYPKSPK  213 (262)
T ss_pred             CCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccc---------------------hHHHHHHHHHHHhCCCCCC
Confidence            4455555555555555544322    22455555555555                     6666666667776665   


Q ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCcc
Q 019586           77 LESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDH  113 (338)
Q Consensus        77 ~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~  113 (338)
                      -+++++.||.++..+|+.++|...|+.+++.-|..+.
T Consensus       214 ApdallKlg~~~~~l~~~d~A~atl~qv~k~YP~t~a  250 (262)
T COG1729         214 APDALLKLGVSLGRLGNTDEACATLQQVIKRYPGTDA  250 (262)
T ss_pred             ChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCCHH
Confidence            4588999999999999999999999999999998765

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=97.63  E-value=0.00016  Score=72.07  Aligned_cols=118  Identities=14%  Similarity=0.142  Sum_probs=82.9

Q ss_pred             HHHHHHHHcCCHHHHHHHHHhhCcCCc-CCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHc
Q 019586           28 NLGICLMKQGRIGEAKETLRRVKPAVA-DGPRGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQ  106 (338)
Q Consensus        28 nLG~~y~~~G~~dEAi~~~~k~~p~~~-d~lg~~deAi~~yekAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALk  106 (338)
                      ..|+.|.+.|+|..|+..|+++..... ...-+.++..    ++.+   -...+|+|++.++.++++|.+|+.+..++|.
T Consensus       213 e~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~----~~~~---~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe  285 (397)
T KOG0543|consen  213 ERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQK----KAEA---LKLACHLNLAACYLKLKEYKEAIESCNKVLE  285 (397)
T ss_pred             HhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHH----HHHH---HHHHHhhHHHHHHHhhhhHHHHHHHHHHHHh
Confidence            789999999999999999988221111 1000111111    1111   1246789999999999999999999999999


Q ss_pred             cCCCCcccccch---hhhcCccHHHHHhhhhcccCCChhhhhhhhhhhh
Q 019586          107 PQPCKDHILPTT---NAIKTRDDFADENIDSNVDVNPIVLSKHRSVKKL  152 (338)
Q Consensus       107 l~P~~~~~l~~l---~~~~~~~~~A~e~~~~al~~~P~~~~K~~~~~kl  152 (338)
                      ++|+|...+...   ....+..+.|+..+..++.+.|.+.-...++.++
T Consensus       286 ~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l  334 (397)
T KOG0543|consen  286 LDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKL  334 (397)
T ss_pred             cCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence            999998855332   5677778888999999999999864444444333

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=97.61  E-value=0.00019  Score=69.28  Aligned_cols=110  Identities=13%  Similarity=0.102  Sum_probs=82.2

Q ss_pred             CCCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcCCHHHHHHHHHhhCcCCcC---------------CCCCHHHHHHH
Q 019586            3 QNNYIEAEDAYRRALSIAPDNNKMC-NLGICLMKQGRIGEAKETLRRVKPAVAD---------------GPRGVDSHLKA   66 (338)
Q Consensus         3 ~g~~eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k~~p~~~d---------------~lg~~deAi~~   66 (338)
                      .|++++|+..+.+.     ++.+.. -.-.+|.+++|++.|.+.++....-+.|               .-..+.+|.-.
T Consensus       115 ~~~~~~AL~~l~~~-----~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~eD~~l~qLa~awv~l~~g~e~~~~A~y~  189 (290)
T PF04733_consen  115 EGDYEEALKLLHKG-----GSLELLALAVQILLKMNRPDLAEKELKNMQQIDEDSILTQLAEAWVNLATGGEKYQDAFYI  189 (290)
T ss_dssp             CCHHHHHHCCCTTT-----TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHTTTCCCHHHHH
T ss_pred             cCCHHHHHHHHHcc-----CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhCchhHHHHHHH
Confidence            46677777666553     455544 6667889999999999999885443333               13478999999


Q ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCcccccc
Q 019586           67 YERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDHILPT  117 (338)
Q Consensus        67 yekAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~~l~~  117 (338)
                      |++..+.-+..+..++.++.+++.+|+|++|...++.++..+|.++..+.+
T Consensus       190 f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaN  240 (290)
T PF04733_consen  190 FEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLAN  240 (290)
T ss_dssp             HHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHH
T ss_pred             HHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHH
Confidence            999877767888999999999999999999999999999999998884443

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=97.60  E-value=0.00065  Score=62.15  Aligned_cols=126  Identities=15%  Similarity=0.043  Sum_probs=100.5

Q ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHcCCHHHHHHHHHh-hCcCCcC-------------CCCCHHHHHHHHHHH
Q 019586            5 NYIEAEDAYRRALSIAPDNNKMCNLGICLMKQGRIGEAKETLRR-VKPAVAD-------------GPRGVDSHLKAYERA   70 (338)
Q Consensus         5 ~~eeAi~~y~kALeldPd~a~a~nLG~~y~~~G~~dEAi~~~~k-~~p~~~d-------------~lg~~deAi~~yekA   70 (338)
                      +.+.+.....+.+++.|....-+.||..+...|++.||...|++ +.-.++.             ..+++..|...+++.
T Consensus        71 dP~R~~Rea~~~~~~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l  150 (251)
T COG4700          71 DPERHLREATEELAIAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDL  150 (251)
T ss_pred             ChhHHHHHHHHHHhhchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHH
Confidence            44566666777788888888888999999999999999999999 3333433             377999999999999


Q ss_pred             HHhCCC--CHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCcc--cccchhhhcCccHHHHH
Q 019586           71 QQMLKD--LESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDH--ILPTTNAIKTRDDFADE  130 (338)
Q Consensus        71 L~l~Pd--~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~--~l~~l~~~~~~~~~A~e  130 (338)
                      .+.+|.  .+..+.-+|.+|..+|++.+|...|+.++..-|.-..  .+....+.+|+...+..
T Consensus       151 ~e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg~~ar~~Y~e~La~qgr~~ea~a  214 (251)
T COG4700         151 MEYNPAFRSPDGHLLFARTLAAQGKYADAESAFEVAISYYPGPQARIYYAEMLAKQGRLREANA  214 (251)
T ss_pred             hhcCCccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCCCHHHHHHHHHHHHHhcchhHHHH
Confidence            999987  4577888999999999999999999999999987544  33344456665555543

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=97.54  E-value=0.00018  Score=68.50  Aligned_cols=110  Identities=13%  Similarity=0.086  Sum_probs=82.6

Q ss_pred             CCHHHHHHHHHHHHHhCC--CCHH----HH-HHHHHHHHc-CCHHHHHHHHHhhCcCCcC-------------------C
Q 019586            4 NNYIEAEDAYRRALSIAP--DNNK----MC-NLGICLMKQ-GRIGEAKETLRRVKPAVAD-------------------G   56 (338)
Q Consensus         4 g~~eeAi~~y~kALeldP--d~a~----a~-nLG~~y~~~-G~~dEAi~~~~k~~p~~~d-------------------~   56 (338)
                      .++++|+.+|++|+.+.-  +...    .+ ++|.+|... |++++|+.+|+++...+..                   .
T Consensus        88 ~~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~  167 (282)
T PF14938_consen   88 GDPDEAIECYEKAIEIYREAGRFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYAR  167 (282)
T ss_dssp             TTHHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH
T ss_pred             hCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHH
Confidence            478999999999999742  2222    33 999999998 9999999999994332211                   2


Q ss_pred             CCCHHHHHHHHHHHHHhCCC-------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCcc
Q 019586           57 PRGVDSHLKAYERAQQMLKD-------LESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDH  113 (338)
Q Consensus        57 lg~~deAi~~yekAL~l~Pd-------~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~  113 (338)
                      +++|++|+..|++.....-+       ....++..+.+++..|++..|...|++....+|....
T Consensus       168 l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~  231 (282)
T PF14938_consen  168 LGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFAS  231 (282)
T ss_dssp             TT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTT
T ss_pred             hCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCC
Confidence            88999999999999875322       1144577888999999999999999999999997655

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=97.53  E-value=0.00083  Score=70.66  Aligned_cols=113  Identities=18%  Similarity=0.052  Sum_probs=101.6

Q ss_pred             CCCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcCCHHHHHHHHHh---hCcCCcC----------CCCCHHHHHHHHH
Q 019586            3 QNNYIEAEDAYRRALSIAPDNNKMC-NLGICLMKQGRIGEAKETLRR---VKPAVAD----------GPRGVDSHLKAYE   68 (338)
Q Consensus         3 ~g~~eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k---~~p~~~d----------~lg~~deAi~~ye   68 (338)
                      +++.++|+.+++++|+..|+++..| -+|.++-.+++.+.|...|..   ..|..+.          ..|+.-.|...++
T Consensus       664 ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ild  743 (913)
T KOG0495|consen  664 LDNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILD  743 (913)
T ss_pred             hhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHH
Confidence            5788999999999999999999988 999999999999999999988   4454443          3678999999999


Q ss_pred             HHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCcccc
Q 019586           69 RAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDHIL  115 (338)
Q Consensus        69 kAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~~l  115 (338)
                      ++.--+|.++..|...-.+-+..|..+.|.....+||+--|.+..+.
T Consensus       744 rarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LW  790 (913)
T KOG0495|consen  744 RARLKNPKNALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLW  790 (913)
T ss_pred             HHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhH
Confidence            99999999999999999999999999999999999999999987643

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=97.53  E-value=0.0003  Score=60.16  Aligned_cols=70  Identities=31%  Similarity=0.412  Sum_probs=57.3

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCCHH---HH-HHHHHHHHcCCHHHHHHHHHhhCcCCcC------------CCCCHHHHHH
Q 019586            2 QQNNYIEAEDAYRRALSIAPDNNK---MC-NLGICLMKQGRIGEAKETLRRVKPAVAD------------GPRGVDSHLK   65 (338)
Q Consensus         2 q~g~~eeAi~~y~kALeldPd~a~---a~-nLG~~y~~~G~~dEAi~~~~k~~p~~~d------------~lg~~deAi~   65 (338)
                      ..|++++|+..|++++...|+...   +. .||.++..+|++++|+..++.+.+....            ..|++++|+.
T Consensus        60 ~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~  139 (145)
T PF09976_consen   60 EQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDEALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARA  139 (145)
T ss_pred             HCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHH
Confidence            469999999999999998876543   22 9999999999999999999884322111            3899999999


Q ss_pred             HHHHHH
Q 019586           66 AYERAQ   71 (338)
Q Consensus        66 ~yekAL   71 (338)
                      .|++||
T Consensus       140 ~y~~Al  145 (145)
T PF09976_consen  140 AYQKAL  145 (145)
T ss_pred             HHHHhC
Confidence            999985

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=97.53  E-value=0.00048  Score=62.25  Aligned_cols=69  Identities=17%  Similarity=0.143  Sum_probs=54.1

Q ss_pred             CHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcCC----HHHHHHHHHhhCcCCcCCCCCHHHHHHHHHHHHHhCCCCHH
Q 019586            5 NYIEAEDAYRRALSIAPDNNKMC-NLGICLMKQGR----IGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDLES   79 (338)
Q Consensus         5 ~~eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G~----~dEAi~~~~k~~p~~~d~lg~~deAi~~yekAL~l~Pd~~~   79 (338)
                      -+++|+.-|++||.++|+..+++ ++|++|..++.    ..+|..+|              ++|..+|++|.+.+|++..
T Consensus        50 miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F--------------~kA~~~FqkAv~~~P~ne~  115 (186)
T PF06552_consen   50 MIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLTPDTAEAEEYF--------------EKATEYFQKAVDEDPNNEL  115 (186)
T ss_dssp             HHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH---HHHHHHHH--------------HHHHHHHHHHHHH-TT-HH
T ss_pred             HHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhcCChHHHHHHH--------------HHHHHHHHHHHhcCCCcHH
Confidence            37899999999999999999965 99999988765    45676777              6699999999999999887


Q ss_pred             HHHHHHHH
Q 019586           80 EMMNKGGD   87 (338)
Q Consensus        80 a~~nLG~~   87 (338)
                      .+..|..+
T Consensus       116 Y~ksLe~~  123 (186)
T PF06552_consen  116 YRKSLEMA  123 (186)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            77666554

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=97.52  E-value=0.0003  Score=67.78  Aligned_cols=109  Identities=13%  Similarity=0.014  Sum_probs=80.2

Q ss_pred             CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCcccccch------hhhcCccHHHHH
Q 019586           57 PRGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDHILPTT------NAIKTRDDFADE  130 (338)
Q Consensus        57 lg~~deAi~~yekAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~~l~~l------~~~~~~~~~A~e  130 (338)
                      ....+.-+.-++.-++.+|++.+.|..||.+|+.+|++..|...|.+|+++.|++++++..+      .........+..
T Consensus       135 ~~~~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~  214 (287)
T COG4235         135 EQEMEALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARA  214 (287)
T ss_pred             cccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHH
Confidence            44678889999999999999999999999999999999999999999999999999955432      122222333455


Q ss_pred             hhhhcccCCChhhhhhhhhhhhcchHHHHHHhHhHHHHhhchhhhhhHhhhhhhhhhhhhcc
Q 019586          131 NIDSNVDVNPIVLSKHRSVKKLFPTANAIKTQENFADENINANIVVNQTVLAQQRGVQQLAP  192 (338)
Q Consensus       131 ~~~~al~~~P~~~~K~~~~~kl~~~~~ai~~~~~~~e~y~nlg~~~~~~~~~d~r~~~~~~~  192 (338)
                      .+..++..+|.                       -..+..-|+.    ..|.+++..+++++
T Consensus       215 ll~~al~~D~~-----------------------~iral~lLA~----~afe~g~~~~A~~~  249 (287)
T COG4235         215 LLRQALALDPA-----------------------NIRALSLLAF----AAFEQGDYAEAAAA  249 (287)
T ss_pred             HHHHHHhcCCc-----------------------cHHHHHHHHH----HHHHcccHHHHHHH
Confidence            55555555554                       3344444444    66777777766554

>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=97.51  E-value=3e-05  Score=75.94  Aligned_cols=88  Identities=9%  Similarity=0.057  Sum_probs=79.0

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcCCHHHHHHHHHhhCcCCcCCCCCHHHHHHHHHHHHHhCCCCHHH
Q 019586            2 QQNNYIEAEDAYRRALSIAPDNNKMC-NLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDLESE   80 (338)
Q Consensus         2 q~g~~eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k~~p~~~d~lg~~deAi~~yekAL~l~Pd~~~a   80 (338)
                      ..|.+++||+.|..||+++|..+..| ..+.++.+++++                     ..|+..|..|++++||....
T Consensus       126 n~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp---------------------~~airD~d~A~ein~Dsa~~  184 (377)
T KOG1308|consen  126 NDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKP---------------------NAAIRDCDFAIEINPDSAKG  184 (377)
T ss_pred             cCcchhhhhcccccccccCCchhhhcccccceeeeccCC---------------------chhhhhhhhhhccCcccccc
Confidence            46789999999999999999999988 999999999998                     55667777799999999999


Q ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHccCCC
Q 019586           81 MMNKGGDRVEQSRLFDAFLGSSSIWQPQPC  110 (338)
Q Consensus        81 ~~nLG~~l~~lGr~~eAi~~yekALkl~P~  110 (338)
                      |-..|.+...+|++.+|...+..+.+++-+
T Consensus       185 ykfrg~A~rllg~~e~aa~dl~~a~kld~d  214 (377)
T KOG1308|consen  185 YKFRGYAERLLGNWEEAAHDLALACKLDYD  214 (377)
T ss_pred             cchhhHHHHHhhchHHHHHHHHHHHhcccc
Confidence            999999999999999999999999888654

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=97.51  E-value=0.00025  Score=68.43  Aligned_cols=111  Identities=13%  Similarity=-0.005  Sum_probs=86.2

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCCHHHH--HHHHHHHHcC--CHHHHHHHHHhhCcCCcC-------------CCCCHHHHH
Q 019586            2 QQNNYIEAEDAYRRALSIAPDNNKMC--NLGICLMKQG--RIGEAKETLRRVKPAVAD-------------GPRGVDSHL   64 (338)
Q Consensus         2 q~g~~eeAi~~y~kALeldPd~a~a~--nLG~~y~~~G--~~dEAi~~~~k~~p~~~d-------------~lg~~deAi   64 (338)
                      ..++++.|.+.++.+-+++.| ....  -.+++....|  ++.+|...|+.+...++.             .+|+|++|.
T Consensus       143 ~~~R~dlA~k~l~~~~~~~eD-~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe  221 (290)
T PF04733_consen  143 KMNRPDLAEKELKNMQQIDED-SILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAE  221 (290)
T ss_dssp             HTT-HHHHHHHHHHHHCCSCC-HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHH
T ss_pred             HcCCHHHHHHHHHHHHhcCCc-HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHH
Confidence            468999999999998887765 4444  4444555555  599999999996665544             389999999


Q ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHCCCH-HHHHHHHHHHHccCCCCcc
Q 019586           65 KAYERAQQMLKDLESEMMNKGGDRVEQSRL-FDAFLGSSSIWQPQPCKDH  113 (338)
Q Consensus        65 ~~yekAL~l~Pd~~~a~~nLG~~l~~lGr~-~eAi~~yekALkl~P~~~~  113 (338)
                      ..+++|+..+|.+++++.|+..+...+|+. +.+.+++......+|.++.
T Consensus       222 ~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p~h~~  271 (290)
T PF04733_consen  222 ELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQSNPNHPL  271 (290)
T ss_dssp             HHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTTTSHH
T ss_pred             HHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHhCCCChH
Confidence            999999999999999999999999999999 5566677888888998876

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=97.50  E-value=0.00037  Score=72.94  Aligned_cols=110  Identities=16%  Similarity=0.156  Sum_probs=85.8

Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcCCHHHHHHHHHhhCcCCcCC-------------CCCHHHHHHHHHH
Q 019586            4 NNYIEAEDAYRRALSIAPDNNKMC-NLGICLMKQGRIGEAKETLRRVKPAVADG-------------PRGVDSHLKAYER   69 (338)
Q Consensus         4 g~~eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k~~p~~~d~-------------lg~~deAi~~yek   69 (338)
                      ++|...+...++.++-.|.+++.. -.|..+..+|+-++|..+.+....++...             -.+|++|++||+.
T Consensus        21 kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~n  100 (700)
T KOG1156|consen   21 KQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKCYRN  100 (700)
T ss_pred             HHHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHHHHH
Confidence            567777777778888888888866 88888889999988888887744433331             3478888888888


Q ss_pred             HHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCcc
Q 019586           70 AQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDH  113 (338)
Q Consensus        70 AL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~  113 (338)
                      |+.+.|++...|.-|+..-.++|+++-........|++.|.+-.
T Consensus       101 Al~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra  144 (700)
T KOG1156|consen  101 ALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRA  144 (700)
T ss_pred             HHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHH
Confidence            88888888888888888888888888888888888888887654

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=97.49  E-value=0.00026  Score=76.97  Aligned_cols=138  Identities=17%  Similarity=0.108  Sum_probs=116.3

Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcCCHHHHHHHHHhhCcCCc---C----------CCCCHHHHHHHHHH
Q 019586            4 NNYIEAEDAYRRALSIAPDNNKMC-NLGICLMKQGRIGEAKETLRRVKPAVA---D----------GPRGVDSHLKAYER   69 (338)
Q Consensus         4 g~~eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k~~p~~~---d----------~lg~~deAi~~yek   69 (338)
                      ++...|...|-+++.+++..+.+| .||.+|+.--+...|..+|+++-..++   .          ....++.|.....+
T Consensus       472 K~~~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~  551 (1238)
T KOG1127|consen  472 KNSALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLR  551 (1238)
T ss_pred             hhHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHH
Confidence            346789999999999999999988 999999999899999999999544333   2          26689999988877


Q ss_pred             HHHhCCCCH--HHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCcc---cccchhhhcCccHHHHHhhhhcccCCCh
Q 019586           70 AQQMLKDLE--SEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDH---ILPTTNAIKTRDDFADENIDSNVDVNPI  141 (338)
Q Consensus        70 AL~l~Pd~~--~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~---~l~~l~~~~~~~~~A~e~~~~al~~~P~  141 (338)
                      +-+..|-..  ..|..+|..|.+.+++..|+.+|+.++..+|.+..   -+++.....|+..-+...++.+..++|.
T Consensus       552 ~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~  628 (1238)
T KOG1127|consen  552 AAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPL  628 (1238)
T ss_pred             HhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcH
Confidence            777777654  55777999999999999999999999999999887   3344477888888899999888888996

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=97.48  E-value=0.00067  Score=70.54  Aligned_cols=123  Identities=10%  Similarity=0.114  Sum_probs=95.0

Q ss_pred             HhCCCCHHHH---HHHHHHHHcCC---HHHHHHHHHh---hCcCCcCC-------------C-----CCHHHHHHHHHHH
Q 019586           18 SIAPDNNKMC---NLGICLMKQGR---IGEAKETLRR---VKPAVADG-------------P-----RGVDSHLKAYERA   70 (338)
Q Consensus        18 eldPd~a~a~---nLG~~y~~~G~---~dEAi~~~~k---~~p~~~d~-------------l-----g~~deAi~~yekA   70 (338)
                      ..-|.+..+|   -.|..|...+.   +..|+.+|++   +.|+++.+             +     .+...+...++++
T Consensus       331 ~~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a  410 (517)
T PRK10153        331 QGLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNI  410 (517)
T ss_pred             ccCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHh
Confidence            3346777766   77777776655   8899999999   45555431             1     1345667777777


Q ss_pred             HHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCcc---cccchhhhcCccHHHHHhhhhcccCCCh
Q 019586           71 QQM--LKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDH---ILPTTNAIKTRDDFADENIDSNVDVNPI  141 (338)
Q Consensus        71 L~l--~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~---~l~~l~~~~~~~~~A~e~~~~al~~~P~  141 (338)
                      +.+  +|..+.+|..+|..+...|++++|..+|++|+.++|. ..   .++.+....|+.+.|.+.+..++.++|.
T Consensus       411 ~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps-~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~  485 (517)
T PRK10153        411 VALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMS-WLNYVLLGKVYELKGDNRLAADAYSTAFNLRPG  485 (517)
T ss_pred             hhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Confidence            775  7778899999999999999999999999999999994 43   3334456789999999999999999987

>PRK11906 transcriptional regulator; Provisional

Probab=97.43  E-value=0.00089  Score=68.16  Aligned_cols=80  Identities=6%  Similarity=-0.038  Sum_probs=44.1

Q ss_pred             HHHHHHHHH---HhCCCCHHHHHHHHHHHHHC---------CCHHHHHHHHHHHHccCCCCcccccc---hhhhcCccHH
Q 019586           63 HLKAYERAQ---QMLKDLESEMMNKGGDRVEQ---------SRLFDAFLGSSSIWQPQPCKDHILPT---TNAIKTRDDF  127 (338)
Q Consensus        63 Ai~~yekAL---~l~Pd~~~a~~nLG~~l~~l---------Gr~~eAi~~yekALkl~P~~~~~l~~---l~~~~~~~~~  127 (338)
                      |+..|.+|+   +++|+++.+|-.++.++...         ....+|.++-++|++++|.++..+..   +....++.+.
T Consensus       277 Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~~~~~  356 (458)
T PRK11906        277 AMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKILAIMGLITGLSGQAKV  356 (458)
T ss_pred             HHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhcchhh
Confidence            455555666   66666666666666555432         12345555666666666666653222   2334444555


Q ss_pred             HHHhhhhcccCCChh
Q 019586          128 ADENIDSNVDVNPIV  142 (338)
Q Consensus       128 A~e~~~~al~~~P~~  142 (338)
                      +...++.++.++|+.
T Consensus       357 a~~~f~rA~~L~Pn~  371 (458)
T PRK11906        357 SHILFEQAKIHSTDI  371 (458)
T ss_pred             HHHHHHHHhhcCCcc
Confidence            566666666666653

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]

Probab=97.43  E-value=0.00016  Score=72.54  Aligned_cols=105  Identities=14%  Similarity=0.115  Sum_probs=67.5

Q ss_pred             CCCHHHHHHHHHHHHHhCCCCHH-------HHHHHHHHHHcCC--------------------HHHHHHHHHh---hCcC
Q 019586            3 QNNYIEAEDAYRRALSIAPDNNK-------MCNLGICLMKQGR--------------------IGEAKETLRR---VKPA   52 (338)
Q Consensus         3 ~g~~eeAi~~y~kALeldPd~a~-------a~nLG~~y~~~G~--------------------~dEAi~~~~k---~~p~   52 (338)
                      .|.|++|+.+..+-+.+...-.+       +||||++|...|+                    ++.|.++|+.   +...
T Consensus       108 ~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l~~~  187 (639)
T KOG1130|consen  108 KGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLELSEK  187 (639)
T ss_pred             hcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHHHHH
Confidence            57788888877776655332221       4488888877776                    3445555544   1111


Q ss_pred             CcC----------------CCCCHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHCCCHHHHHHHHHHHHcc
Q 019586           53 VAD----------------GPRGVDSHLKAYERAQQMLKDLE------SEMMNKGGDRVEQSRLFDAFLGSSSIWQP  107 (338)
Q Consensus        53 ~~d----------------~lg~~deAi~~yekAL~l~Pd~~------~a~~nLG~~l~~lGr~~eAi~~yekALkl  107 (338)
                      ..+                .+|+|+.|+..-+.-+++...+.      .+|.|+|+++..+|+++.|+++|.+.+.+
T Consensus       188 lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~L  264 (639)
T KOG1130|consen  188 LGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNL  264 (639)
T ss_pred             hhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHH
Confidence            111                26788888877777777665444      56788888888888888888888776544

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=97.36  E-value=0.0013  Score=55.65  Aligned_cols=90  Identities=16%  Similarity=0.040  Sum_probs=64.3

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHhhCcCCcCCCCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHCCCHHHHHHHHH
Q 019586           26 MCNLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDL---ESEMMNKGGDRVEQSRLFDAFLGSS  102 (338)
Q Consensus        26 a~nLG~~y~~~G~~dEAi~~~~k~~p~~~d~lg~~deAi~~yekAL~l~Pd~---~~a~~nLG~~l~~lGr~~eAi~~ye  102 (338)
                      .|++|.++..+|+.++                     |+..|++++....+.   ..++..+|.+|..+|++++|+..++
T Consensus         4 ~~~~A~a~d~~G~~~~---------------------Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~   62 (120)
T PF12688_consen    4 LYELAWAHDSLGREEE---------------------AIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLE   62 (120)
T ss_pred             HHHHHHHHHhcCCHHH---------------------HHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            3588888988988855                     555555577765433   4788999999999999999999999


Q ss_pred             HHHccCCCCcc------cccchhhhcCccHHHHHhhhhcc
Q 019586          103 SIWQPQPCKDH------ILPTTNAIKTRDDFADENIDSNV  136 (338)
Q Consensus       103 kALkl~P~~~~------~l~~l~~~~~~~~~A~e~~~~al  136 (338)
                      +++.-.|++..      .++......++.+.+.+.+...+
T Consensus        63 ~~~~~~p~~~~~~~l~~f~Al~L~~~gr~~eAl~~~l~~l  102 (120)
T PF12688_consen   63 EALEEFPDDELNAALRVFLALALYNLGRPKEALEWLLEAL  102 (120)
T ss_pred             HHHHHCCCccccHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            99998887433      11222355666777666554443

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=97.34  E-value=0.00076  Score=61.25  Aligned_cols=88  Identities=14%  Similarity=0.148  Sum_probs=68.8

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHhhCcCCcCC----------------CCCHHHHHHHHHHHHHhCCCCH---HHHHHHHH
Q 019586           26 MCNLGICLMKQGRIGEAKETLRRVKPAVADG----------------PRGVDSHLKAYERAQQMLKDLE---SEMMNKGG   86 (338)
Q Consensus        26 a~nLG~~y~~~G~~dEAi~~~~k~~p~~~d~----------------lg~~deAi~~yekAL~l~Pd~~---~a~~nLG~   86 (338)
                      .|..|..+...|+|.+|+..|+++...+|..                .|++++|+..|++-++..|+++   .+++.+|.
T Consensus         8 lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~   87 (203)
T PF13525_consen    8 LYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGL   87 (203)
T ss_dssp             HHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHH
Confidence            5699999999999999999999976666552                7899999999999999998866   67888888


Q ss_pred             HHHHCC-----------CHHHHHHHHHHHHccCCCCcc
Q 019586           87 DRVEQS-----------RLFDAFLGSSSIWQPQPCKDH  113 (338)
Q Consensus        87 ~l~~lG-----------r~~eAi~~yekALkl~P~~~~  113 (338)
                      +++.+.           ...+|+..|+..++.-|+...
T Consensus        88 ~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y  125 (203)
T PF13525_consen   88 SYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEY  125 (203)
T ss_dssp             HHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTT
T ss_pred             HHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchH
Confidence            866543           345899999999999998776

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=97.33  E-value=0.00052  Score=64.06  Aligned_cols=56  Identities=14%  Similarity=0.121  Sum_probs=48.8

Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCcc
Q 019586           58 RGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDH  113 (338)
Q Consensus        58 g~~deAi~~yekAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~  113 (338)
                      |+++.|.+.|.-.++++|.+.-++.|.|..++--||+.-|.+.+.+..+-+|+++-
T Consensus       113 ~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~DPf  168 (297)
T COG4785         113 GNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQDDPNDPF  168 (297)
T ss_pred             ccchHHHHHhhhHhccCCcchHHHhccceeeeecCchHhhHHHHHHHHhcCCCChH
Confidence            44477777778899999999999999999999999999999999999999999886

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=97.32  E-value=0.00038  Score=52.81  Aligned_cols=47  Identities=36%  Similarity=0.523  Sum_probs=36.7

Q ss_pred             CCCCHHHHHHHHHHHHHhC----CCCHH---HH-HHHHHHHHcCCHHHHHHHHHh
Q 019586            2 QQNNYIEAEDAYRRALSIA----PDNNK---MC-NLGICLMKQGRIGEAKETLRR   48 (338)
Q Consensus         2 q~g~~eeAi~~y~kALeld----Pd~a~---a~-nLG~~y~~~G~~dEAi~~~~k   48 (338)
                      .+|+|++|+.+|++|+.+.    +++..   .+ ++|.+|..+|++++|+.+|++
T Consensus        17 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~   71 (78)
T PF13424_consen   17 ELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQK   71 (78)
T ss_dssp             HTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            4689999999999999872    22222   23 999999999999888888866

...

>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]

Probab=97.31  E-value=0.00016  Score=71.14  Aligned_cols=102  Identities=12%  Similarity=0.111  Sum_probs=78.8

Q ss_pred             HHHHHHHHcCCHHHHHHHHHhhCcCCcCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcc
Q 019586           28 NLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQP  107 (338)
Q Consensus        28 nLG~~y~~~G~~dEAi~~~~k~~p~~~d~lg~~deAi~~yekAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl  107 (338)
                      ..|+.|.++|+|                     ++||.||.+++.+.|.++..|.|.+.+|+++.+|..|...+..|+.+
T Consensus       102 E~GN~yFKQgKy---------------------~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaL  160 (536)
T KOG4648|consen  102 ERGNTYFKQGKY---------------------EEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIAL  160 (536)
T ss_pred             Hhhhhhhhccch---------------------hHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHh
Confidence            567777777777                     67777888899999999999999999999999999999999999998


Q ss_pred             CCCCcccccch---hhhcCccHHHHHhhhhcccCCChhhhhhhhhh
Q 019586          108 QPCKDHILPTT---NAIKTRDDFADENIDSNVDVNPIVLSKHRSVK  150 (338)
Q Consensus       108 ~P~~~~~l~~l---~~~~~~~~~A~e~~~~al~~~P~~~~K~~~~~  150 (338)
                      +-.....++..   ....+....|.+.+...+.+.|.......+..
T Consensus       161 d~~Y~KAYSRR~~AR~~Lg~~~EAKkD~E~vL~LEP~~~ELkK~~a  206 (536)
T KOG4648|consen  161 DKLYVKAYSRRMQARESLGNNMEAKKDCETVLALEPKNIELKKSLA  206 (536)
T ss_pred             hHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHhhCcccHHHHHHHH
Confidence            87655544332   22344555677888888888898665444443

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.30  E-value=0.0013  Score=63.91  Aligned_cols=53  Identities=17%  Similarity=0.250  Sum_probs=43.9

Q ss_pred             CCCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcCCHHHHHHHHHhhCcCCcC
Q 019586            3 QNNYIEAEDAYRRALSIAPDNNKMC-NLGICLMKQGRIGEAKETLRRVKPAVAD   55 (338)
Q Consensus         3 ~g~~eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k~~p~~~d   55 (338)
                      ..+|+.||.+..--.+.+|.+.-.. .||.||....+|.+|..+|+++...+|.
T Consensus        23 d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~   76 (459)
T KOG4340|consen   23 DARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPE   76 (459)
T ss_pred             HhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChH
Confidence            3578899999999999999665544 9999999999999999999996655554

>PRK15331 chaperone protein SicA; Provisional

Probab=97.28  E-value=0.0018  Score=57.74  Aligned_cols=91  Identities=8%  Similarity=-0.082  Sum_probs=72.7

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHhhCcCCcCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Q 019586           26 MCNLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIW  105 (338)
Q Consensus        26 a~nLG~~y~~~G~~dEAi~~~~k~~p~~~d~lg~~deAi~~yekAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekAL  105 (338)
                      .|.+|.-+..+|++++                     |...|+-...++|.++..|+.||.++..+|+|++|+.+|..+.
T Consensus        40 iY~~Ay~~y~~Gk~~e---------------------A~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~   98 (165)
T PRK15331         40 LYAHAYEFYNQGRLDE---------------------AETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAF   98 (165)
T ss_pred             HHHHHHHHHHCCCHHH---------------------HHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4477777777888855                     5555555777999999999999999999999999999999999


Q ss_pred             ccCCCCcc---cccchhhhcCccHHHHHhhhhccc
Q 019586          106 QPQPCKDH---ILPTTNAIKTRDDFADENIDSNVD  137 (338)
Q Consensus       106 kl~P~~~~---~l~~l~~~~~~~~~A~e~~~~al~  137 (338)
                      .++++++.   ..+......+....|...+..++.
T Consensus        99 ~l~~~dp~p~f~agqC~l~l~~~~~A~~~f~~a~~  133 (165)
T PRK15331         99 TLLKNDYRPVFFTGQCQLLMRKAAKARQCFELVNE  133 (165)
T ss_pred             HcccCCCCccchHHHHHHHhCCHHHHHHHHHHHHh
Confidence            99999887   233346677777788887777765

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=97.28  E-value=0.0013  Score=70.20  Aligned_cols=131  Identities=12%  Similarity=0.053  Sum_probs=103.0

Q ss_pred             CCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHcCCHHHHHHHHHhhCc---CCcC------------CCCCHHHHH
Q 019586            2 QQNNYIEAEDAYRRALSI--APDNNKMCNLGICLMKQGRIGEAKETLRRVKP---AVAD------------GPRGVDSHL   64 (338)
Q Consensus         2 q~g~~eeAi~~y~kALel--dPd~a~a~nLG~~y~~~G~~dEAi~~~~k~~p---~~~d------------~lg~~deAi   64 (338)
                      +.|++++|+..|++.++.  .|+...+..+-.++...|.+++|..+|+....   ..|+            ..|++++|.
T Consensus       403 ~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~  482 (697)
T PLN03081        403 NHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAY  482 (697)
T ss_pred             HcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHH
Confidence            468999999999998874  57766666888889999999999999988432   2232            278999999


Q ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCcc---cccchhhhcCccHHHHHhhhh
Q 019586           65 KAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDH---ILPTTNAIKTRDDFADENIDS  134 (338)
Q Consensus        65 ~~yekAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~---~l~~l~~~~~~~~~A~e~~~~  134 (338)
                      ..++++ ...| +...|..|..++...|+++.|...+++.+++.|.+..   .+..+....|+.+.|.+.+..
T Consensus       483 ~~~~~~-~~~p-~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~  553 (697)
T PLN03081        483 AMIRRA-PFKP-TVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVET  553 (697)
T ss_pred             HHHHHC-CCCC-CHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHH
Confidence            998875 3445 4567999999999999999999999999999998765   333446778888887665544

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=97.28  E-value=0.0059  Score=50.10  Aligned_cols=53  Identities=15%  Similarity=0.115  Sum_probs=27.0

Q ss_pred             CCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCC
Q 019586           58 RGVDSHLKAYERAQQMLKD-LESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPC  110 (338)
Q Consensus        58 g~~deAi~~yekAL~l~Pd-~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~  110 (338)
                      ++++.|+..+.+++...+. ....+..++..+...+++.+|...+..++...|.
T Consensus       181 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~  234 (291)
T COG0457         181 GRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPD  234 (291)
T ss_pred             cCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcc
Confidence            3455555555555555554 3455555555555555555555555555555444

>PLN03077 Protein ECB2; Provisional

Probab=97.28  E-value=0.0026  Score=69.33  Aligned_cols=127  Identities=11%  Similarity=0.061  Sum_probs=96.8

Q ss_pred             CCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHcCCHHHHHHHHHhhC---cCCcC------------CCCCHHHHH
Q 019586            2 QQNNYIEAEDAYRRALSI--APDNNKMCNLGICLMKQGRIGEAKETLRRVK---PAVAD------------GPRGVDSHL   64 (338)
Q Consensus         2 q~g~~eeAi~~y~kALel--dPd~a~a~nLG~~y~~~G~~dEAi~~~~k~~---p~~~d------------~lg~~deAi   64 (338)
                      +.|+.++|+.+|++..+.  .|+...+..+-.++...|++++|..+|+...   ...|+            ..|++++|.
T Consensus       566 ~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~  645 (857)
T PLN03077        566 AHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAY  645 (857)
T ss_pred             HcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHH
Confidence            468899999999988774  5776666666667888999999999998843   22333            278999999


Q ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCcc---cccchhhhcCccHHHHH
Q 019586           65 KAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDH---ILPTTNAIKTRDDFADE  130 (338)
Q Consensus        65 ~~yekAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~---~l~~l~~~~~~~~~A~e  130 (338)
                      ..+++. .+.|+ ...|..|-.++...|+.+.|....+++++++|++..   .+.++.+..|+++.+..
T Consensus       646 ~~~~~m-~~~pd-~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~  712 (857)
T PLN03077        646 NFINKM-PITPD-PAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVAR  712 (857)
T ss_pred             HHHHHC-CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHH
Confidence            998875 45675 667777777788889999999999999999998877   33445667777777643

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.26  E-value=0.0053  Score=63.99  Aligned_cols=109  Identities=15%  Similarity=0.110  Sum_probs=79.5

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHcCCHHHHHHHHHhhCcCCcC-------------------------
Q 019586            2 QQNNYIEAEDAYRRALSIAPDNNK-MCNLGICLMKQGRIGEAKETLRRVKPAVAD-------------------------   55 (338)
Q Consensus         2 q~g~~eeAi~~y~kALeldPd~a~-a~nLG~~y~~~G~~dEAi~~~~k~~p~~~d-------------------------   55 (338)
                      ++++.++|+..+.   .++++... .+-.|.+++++|+|++|...|+.+..++.+                         
T Consensus        91 rlnk~Dealk~~~---~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v  167 (652)
T KOG2376|consen   91 RLNKLDEALKTLK---GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQSV  167 (652)
T ss_pred             HcccHHHHHHHHh---cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhc
Confidence            4566777777777   34554443 337888888999999999999885433322                         


Q ss_pred             -------------------CCCCHHHHHHHHHHHHHhC-------C--------CCHHHHHHHHHHHHHCCCHHHHHHHH
Q 019586           56 -------------------GPRGVDSHLKAYERAQQML-------K--------DLESEMMNKGGDRVEQSRLFDAFLGS  101 (338)
Q Consensus        56 -------------------~lg~~deAi~~yekAL~l~-------P--------d~~~a~~nLG~~l~~lGr~~eAi~~y  101 (338)
                                         ..|+|.+|++.+++|+++.       .        +...+..-|+.++..+|+-.+|...|
T Consensus       168 ~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy  247 (652)
T KOG2376|consen  168 PEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIY  247 (652)
T ss_pred             cCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHH
Confidence                               1579999999999985432       1        12245677888999999999999999


Q ss_pred             HHHHccCCCCcc
Q 019586          102 SSIWQPQPCKDH  113 (338)
Q Consensus       102 ekALkl~P~~~~  113 (338)
                      ...++.+|.+..
T Consensus       248 ~~~i~~~~~D~~  259 (652)
T KOG2376|consen  248 VDIIKRNPADEP  259 (652)
T ss_pred             HHHHHhcCCCch
Confidence            999999988765

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=97.25  E-value=0.0038  Score=58.64  Aligned_cols=102  Identities=10%  Similarity=0.028  Sum_probs=84.5

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCCHH----HHHHHHHHHHcC---------------C---HHHHHHHHHhhCcCCcCC---
Q 019586            2 QQNNYIEAEDAYRRALSIAPDNNK----MCNLGICLMKQG---------------R---IGEAKETLRRVKPAVADG---   56 (338)
Q Consensus         2 q~g~~eeAi~~y~kALeldPd~a~----a~nLG~~y~~~G---------------~---~dEAi~~~~k~~p~~~d~---   56 (338)
                      +.++|++|+..|++.++..|+++.    .|.+|.++..++               +   ..+|+..|+++...+|+.   
T Consensus        81 ~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya  160 (243)
T PRK10866         81 KNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYT  160 (243)
T ss_pred             hcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhH
Confidence            578999999999999999998876    348888865554               1   357888888877777762   


Q ss_pred             ---------------------------CCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHCCCHHHHHHHHHH
Q 019586           57 ---------------------------PRGVDSHLKAYERAQQMLKDLE---SEMMNKGGDRVEQSRLFDAFLGSSS  103 (338)
Q Consensus        57 ---------------------------lg~~deAi~~yekAL~l~Pd~~---~a~~nLG~~l~~lGr~~eAi~~yek  103 (338)
                                                 .|.|..|+.-++.+++--|+.+   ++++.++.+|..+|..++|......
T Consensus       161 ~~A~~rl~~l~~~la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~  237 (243)
T PRK10866        161 TDATKRLVFLKDRLAKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKI  237 (243)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence                                       6799999999999999887755   8889999999999999999887654

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=97.23  E-value=0.0037  Score=66.67  Aligned_cols=169  Identities=9%  Similarity=0.037  Sum_probs=114.5

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHcCCHHHHHHHHHhh-----CcCCcC---------CCCCHHHHHHHH
Q 019586            2 QQNNYIEAEDAYRRALSIAPDNNKMCNLGICLMKQGRIGEAKETLRRV-----KPAVAD---------GPRGVDSHLKAY   67 (338)
Q Consensus         2 q~g~~eeAi~~y~kALeldPd~a~a~nLG~~y~~~G~~dEAi~~~~k~-----~p~~~d---------~lg~~deAi~~y   67 (338)
                      +.|++++|...|++..+  |+...+..+...|.+.|++++|+..|++.     .|+...         ..|.+++|...|
T Consensus       372 k~G~~~~A~~vf~~m~~--~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f  449 (697)
T PLN03081        372 KWGRMEDARNVFDRMPR--KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIF  449 (697)
T ss_pred             HCCCHHHHHHHHHhCCC--CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHH
Confidence            57999999999998754  44333448999999999999999999992     232221         378999999999


Q ss_pred             HHHHHhCCC--CHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCcccccch---hhhcCccHHHHHhhhhcccCCChh
Q 019586           68 ERAQQMLKD--LESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDHILPTT---NAIKTRDDFADENIDSNVDVNPIV  142 (338)
Q Consensus        68 ekAL~l~Pd--~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~~l~~l---~~~~~~~~~A~e~~~~al~~~P~~  142 (338)
                      +...+..+-  ....|..+...|.+.|++++|.+.+++. ...|+.. .+..+   ....+..+.+.......+...|..
T Consensus       450 ~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~-~~~p~~~-~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~  527 (697)
T PLN03081        450 QSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRA-PFKPTVN-MWAALLTACRIHKNLELGRLAAEKLYGMGPEK  527 (697)
T ss_pred             HHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHC-CCCCCHH-HHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCC
Confidence            999864322  3467888999999999999999999875 3344322 22221   345667777777777767777865


Q ss_pred             hhhhhhhhhhcchHHHHHHhHhHHHHhhchhh
Q 019586          143 LSKHRSVKKLFPTANAIKTQENFADENINANI  174 (338)
Q Consensus       143 ~~K~~~~~kl~~~~~ai~~~~~~~e~y~nlg~  174 (338)
                      ......+-.++.....+....++.+.-...|+
T Consensus       528 ~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~  559 (697)
T PLN03081        528 LNNYVVLLNLYNSSGRQAEAAKVVETLKRKGL  559 (697)
T ss_pred             CcchHHHHHHHHhCCCHHHHHHHHHHHHHcCC
Confidence            44443444444444444444444444444444

>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]

Probab=97.22  E-value=0.0023  Score=60.71  Aligned_cols=91  Identities=15%  Similarity=0.176  Sum_probs=76.9

Q ss_pred             CCCCHHHHHHHHHHHHHh--------CCCCHHH----------H-HHHHHHHHcCCHHHHHHHHHhhCcCCcCCCCCHHH
Q 019586            2 QQNNYIEAEDAYRRALSI--------APDNNKM----------C-NLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDS   62 (338)
Q Consensus         2 q~g~~eeAi~~y~kALel--------dPd~a~a----------~-nLG~~y~~~G~~dEAi~~~~k~~p~~~d~lg~~de   62 (338)
                      ++|+|.||+..|+.||..        .|..+++          + |++.|+...|+|                     -+
T Consensus       190 k~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~---------------------ye  248 (329)
T KOG0545|consen  190 KLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEY---------------------YE  248 (329)
T ss_pred             hhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHH---------------------HH
Confidence            468999999999999874        3655542          2 999999999988                     45


Q ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCcc
Q 019586           63 HLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDH  113 (338)
Q Consensus        63 Ai~~yekAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~  113 (338)
                      +++.....+...|.+..+|+..|.++...=+.++|.+.|.++|+++|....
T Consensus       249 vleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslas  299 (329)
T KOG0545|consen  249 VLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLAS  299 (329)
T ss_pred             HHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHH
Confidence            566666789999999999999999999999999999999999999997654

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=97.20  E-value=0.00087  Score=46.11  Aligned_cols=38  Identities=16%  Similarity=0.079  Sum_probs=33.2

Q ss_pred             HHHHHHHHcCCHHHHHHHHHhhCcCCcCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 019586           28 NLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDLESEMMNKGG   86 (338)
Q Consensus        28 nLG~~y~~~G~~dEAi~~~~k~~p~~~d~lg~~deAi~~yekAL~l~Pd~~~a~~nLG~   86 (338)
                      .+|.+|..+|++                     ++|+.+|+++++.+|+++.+|..||.
T Consensus         6 ~la~~~~~~G~~---------------------~~A~~~~~~~l~~~P~~~~a~~~La~   43 (44)
T PF13428_consen    6 ALARAYRRLGQP---------------------DEAERLLRRALALDPDDPEAWRALAQ   43 (44)
T ss_pred             HHHHHHHHcCCH---------------------HHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence            889999999999                     66666777799999999999999885

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]

Probab=97.19  E-value=0.00059  Score=68.64  Aligned_cols=107  Identities=14%  Similarity=0.076  Sum_probs=82.2

Q ss_pred             CCCHHHHHHHHHHHHHhCCCCHH------HH-HHHHHHHHcCCHHHHHHHHHhhCc-------CCcC------------C
Q 019586            3 QNNYIEAEDAYRRALSIAPDNNK------MC-NLGICLMKQGRIGEAKETLRRVKP-------AVAD------------G   56 (338)
Q Consensus         3 ~g~~eeAi~~y~kALeldPd~a~------a~-nLG~~y~~~G~~dEAi~~~~k~~p-------~~~d------------~   56 (338)
                      .|+|++||..-+.-+.+...+.+      ++ |||+||.-+|+++.|+++|.+...       ...+            .
T Consensus       208 LGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytl  287 (639)
T KOG1130|consen  208 LGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTL  287 (639)
T ss_pred             eccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHH
Confidence            58999999999988888766555      44 999999999999999999998211       1111            1


Q ss_pred             CCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCC
Q 019586           57 PRGVDSHLKAYERAQQMLKD------LESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQP  109 (338)
Q Consensus        57 lg~~deAi~~yekAL~l~Pd------~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P  109 (338)
                      +.++.+||.++.+-+.+...      ...+++.||.++..+|..+.|+.+.+..+++.-
T Consensus       288 l~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~~s~  346 (639)
T KOG1130|consen  288 LKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLRSSL  346 (639)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence            34888999998887766533      336788999999999999999887776665533

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=97.19  E-value=0.00044  Score=47.62  Aligned_cols=37  Identities=5%  Similarity=-0.158  Sum_probs=34.4

Q ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCccc
Q 019586           78 ESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDHI  114 (338)
Q Consensus        78 ~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~~  114 (338)
                      +.+|+.+|.+|..+|++++|+.+|+++++.+|+++..
T Consensus         1 p~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a   37 (44)
T PF13428_consen    1 PAAWLALARAYRRLGQPDEAERLLRRALALDPDDPEA   37 (44)
T ss_pred             CHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHH
Confidence            3678999999999999999999999999999999873

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=97.17  E-value=0.012  Score=48.28  Aligned_cols=109  Identities=25%  Similarity=0.274  Sum_probs=90.6

Q ss_pred             CCCCHHHHHHHHHHHHHhCCC---CHHHH-HHHHHHHHcCCHHHHHHHHHhhCcCCcC--------------CCCCHHHH
Q 019586            2 QQNNYIEAEDAYRRALSIAPD---NNKMC-NLGICLMKQGRIGEAKETLRRVKPAVAD--------------GPRGVDSH   63 (338)
Q Consensus         2 q~g~~eeAi~~y~kALeldPd---~a~a~-nLG~~y~~~G~~dEAi~~~~k~~p~~~d--------------~lg~~deA   63 (338)
                      ..|++++|+..|.+++..+|.   ....+ .++..+...+++++|+..+.+.....+.              ..+.++.|
T Consensus       142 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a  221 (291)
T COG0457         142 ELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEA  221 (291)
T ss_pred             HcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccHHHH
Confidence            468999999999999887773   33333 7777788999999999999994332222              25678999


Q ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCC
Q 019586           64 LKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPC  110 (338)
Q Consensus        64 i~~yekAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~  110 (338)
                      +..+.+++...|.....+..++..+...|.+.+|...+.+++...|.
T Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (291)
T COG0457         222 LEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD  268 (291)
T ss_pred             HHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence            99999999999998888889999888888899999999999999987

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=97.15  E-value=0.0071  Score=55.48  Aligned_cols=103  Identities=19%  Similarity=0.156  Sum_probs=85.3

Q ss_pred             CCCCHHHHHHHHHHHHH-hCCCCHHHH-HHHHHHHHcCCHHHHHHHHHhhCcCCcC---------------CCCCHHHHH
Q 019586            2 QQNNYIEAEDAYRRALS-IAPDNNKMC-NLGICLMKQGRIGEAKETLRRVKPAVAD---------------GPRGVDSHL   64 (338)
Q Consensus         2 q~g~~eeAi~~y~kALe-ldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k~~p~~~d---------------~lg~~deAi   64 (338)
                      ..|++.||+.+|++++. +..+++... .++.+....+++.+|...++++...++.               .+|.+.+|.
T Consensus       101 elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~laa~g~~a~Ae  180 (251)
T COG4700         101 ELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLFARTLAAQGKYADAE  180 (251)
T ss_pred             HhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHHHHHHHhcCCchhHH
Confidence            36899999999999987 445555544 9999999999999999999995443333               388999999


Q ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Q 019586           65 KAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIW  105 (338)
Q Consensus        65 ~~yekAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekAL  105 (338)
                      ..|+.++..-|+ +.+....|..+..+|+..+|...|....
T Consensus       181 safe~a~~~ypg-~~ar~~Y~e~La~qgr~~ea~aq~~~v~  220 (251)
T COG4700         181 SAFEVAISYYPG-PQARIYYAEMLAKQGRLREANAQYVAVV  220 (251)
T ss_pred             HHHHHHHHhCCC-HHHHHHHHHHHHHhcchhHHHHHHHHHH
Confidence            999999999885 6677778999999999999988776544

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=97.13  E-value=0.0006  Score=43.66  Aligned_cols=32  Identities=13%  Similarity=-0.033  Sum_probs=30.4

Q ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHccCCC
Q 019586           79 SEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPC  110 (338)
Q Consensus        79 ~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~  110 (338)
                      .+|+.+|.+|..+|++++|+.+|+++++++|+
T Consensus         2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~   33 (34)
T PF13181_consen    2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPD   33 (34)
T ss_dssp             HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence            57999999999999999999999999999985

...

>PLN03077 Protein ECB2; Provisional

Probab=97.10  E-value=0.0055  Score=66.86  Aligned_cols=146  Identities=11%  Similarity=0.049  Sum_probs=103.6

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcCCHHHHHHHHHh-----hCcCCcC---------CCCCHHHHHHH
Q 019586            2 QQNNYIEAEDAYRRALSIAPDNNKMC-NLGICLMKQGRIGEAKETLRR-----VKPAVAD---------GPRGVDSHLKA   66 (338)
Q Consensus         2 q~g~~eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k-----~~p~~~d---------~lg~~deAi~~   66 (338)
                      +.|++++|...|...   .| +...| .+...|...|+.++|+..|++     +.|+...         ..|.+++|..+
T Consensus       536 k~G~~~~A~~~f~~~---~~-d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~  611 (857)
T PLN03077        536 RCGRMNYAWNQFNSH---EK-DVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEY  611 (857)
T ss_pred             HcCCHHHHHHHHHhc---CC-ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHH
Confidence            579999999999986   44 44455 888999999999999999998     2333322         26899999999


Q ss_pred             HHHHHHh---CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCcccccch---hhhcCccHHHHHhhhhcccCCC
Q 019586           67 YERAQQM---LKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDHILPTT---NAIKTRDDFADENIDSNVDVNP  140 (338)
Q Consensus        67 yekAL~l---~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~~l~~l---~~~~~~~~~A~e~~~~al~~~P  140 (338)
                      |+...+.   .|+ ...|..+..+|.+.|++++|...+++. .+.|+... +..+   ....+..+.+.......+.++|
T Consensus       612 f~~M~~~~gi~P~-~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~pd~~~-~~aLl~ac~~~~~~e~~e~~a~~l~~l~p  688 (857)
T PLN03077        612 FHSMEEKYSITPN-LKHYACVVDLLGRAGKLTEAYNFINKM-PITPDPAV-WGALLNACRIHRHVELGELAAQHIFELDP  688 (857)
T ss_pred             HHHHHHHhCCCCc-hHHHHHHHHHHHhCCCHHHHHHHHHHC-CCCCCHHH-HHHHHHHHHHcCChHHHHHHHHHHHhhCC
Confidence            9998854   353 478888999999999999999999885 45665322 2221   2234455556555556667778


Q ss_pred             hhhhhhhhhhhhcc
Q 019586          141 IVLSKHRSVKKLFP  154 (338)
Q Consensus       141 ~~~~K~~~~~kl~~  154 (338)
                      ........+-.++.
T Consensus       689 ~~~~~y~ll~n~ya  702 (857)
T PLN03077        689 NSVGYYILLCNLYA  702 (857)
T ss_pred             CCcchHHHHHHHHH
Confidence            75554444433433

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.07  E-value=0.0046  Score=64.46  Aligned_cols=109  Identities=14%  Similarity=0.138  Sum_probs=88.1

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcCCHHHHHHHHHhhCc-----CC--cC-----CCCCHHHHHHHHH
Q 019586            2 QQNNYIEAEDAYRRALSIAPDNNKMC-NLGICLMKQGRIGEAKETLRRVKP-----AV--AD-----GPRGVDSHLKAYE   68 (338)
Q Consensus         2 q~g~~eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k~~p-----~~--~d-----~lg~~deAi~~ye   68 (338)
                      ..|+|++|+....+.+.+.|+...++ .--.|+..+++|++|+...++-..     .+  ..     .++..++|+.+++
T Consensus        24 ~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~~~~fEKAYc~Yrlnk~Dealk~~~  103 (652)
T KOG2376|consen   24 KNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVINSFFFEKAYCEYRLNKLDEALKTLK  103 (652)
T ss_pred             cchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcchhhHHHHHHHHHcccHHHHHHHHh
Confidence            46889999999999999999999965 666788999999999966666111     11  11     3889999999999


Q ss_pred             HHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCcc
Q 019586           69 RAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDH  113 (338)
Q Consensus        69 kAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~  113 (338)
                         -++++......-.|.+++++|+|++|++.|+..++-+-.+.+
T Consensus       104 ---~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d  145 (652)
T KOG2376|consen  104 ---GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQD  145 (652)
T ss_pred             ---cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHH
Confidence               456777778888999999999999999999998876655443

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.07  E-value=0.0026  Score=60.97  Aligned_cols=111  Identities=19%  Similarity=0.202  Sum_probs=93.4

Q ss_pred             CCCHHHHHHHHHHHHHhCCC-CHHHH-HHHHHHHHcCCHHHHHHHHHhhC----cCCc----C-----------CCCCHH
Q 019586            3 QNNYIEAEDAYRRALSIAPD-NNKMC-NLGICLMKQGRIGEAKETLRRVK----PAVA----D-----------GPRGVD   61 (338)
Q Consensus         3 ~g~~eeAi~~y~kALeldPd-~a~a~-nLG~~y~~~G~~dEAi~~~~k~~----p~~~----d-----------~lg~~d   61 (338)
                      .|.|.-....|.+.++.+|. .+... .||.+-+..|+.+.|..+|+++.    ..+.    .           ..+++.
T Consensus       190 ~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a  269 (366)
T KOG2796|consen  190 MKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFA  269 (366)
T ss_pred             chhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchH
Confidence            35677788999999999854 44444 99999999999999999999521    1110    0           267999


Q ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCcc
Q 019586           62 SHLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDH  113 (338)
Q Consensus        62 eAi~~yekAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~  113 (338)
                      +|...|.++++.+|.++.+-++.+.|++.+|+..+|++..+.++++.|...-
T Consensus       270 ~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~~l  321 (366)
T KOG2796|consen  270 EAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRHYL  321 (366)
T ss_pred             HHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCccch
Confidence            9999999999999999999999999999999999999999999999998654

>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=97.03  E-value=0.0014  Score=64.19  Aligned_cols=54  Identities=13%  Similarity=-0.039  Sum_probs=47.8

Q ss_pred             CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCC
Q 019586           57 PRGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPC  110 (338)
Q Consensus        57 lg~~deAi~~yekAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~  110 (338)
                      +|+|..|+....+|+.++|.+..++++=+.+++++.++++|..+.+..++++-.
T Consensus       132 l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Akc~~eLe~~~~a~nw~ee~~~~d~e  185 (390)
T KOG0551|consen  132 LGNYRSALNDCSAALKLKPTHLKAYIRGAKCLLELERFAEAVNWCEEGLQIDDE  185 (390)
T ss_pred             HHHHHHHHHHHHHHHhcCcchhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhhHH
Confidence            345588899999999999999999999999999999999999999998776543

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=96.99  E-value=0.0091  Score=57.80  Aligned_cols=110  Identities=16%  Similarity=0.189  Sum_probs=88.7

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcCCHHHHHHHHHhhCcCCcC--CCCCHHHH------------HH
Q 019586            1 MQQNNYIEAEDAYRRALSIAPDNNKMC-NLGICLMKQGRIGEAKETLRRVKPAVAD--GPRGVDSH------------LK   65 (338)
Q Consensus         1 mq~g~~eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k~~p~~~d--~lg~~deA------------i~   65 (338)
                      +..|++.+|...|..++...|.+.++- .|+.||...|+.++|...+..+-....+  ..+ ....            +.
T Consensus       145 ~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~-l~a~i~ll~qaa~~~~~~  223 (304)
T COG3118         145 IEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHG-LQAQIELLEQAAATPEIQ  223 (304)
T ss_pred             hhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHH-HHHHHHHHHHHhcCCCHH
Confidence            357899999999999999999998865 9999999999999999999884333322  122 1111            24


Q ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCC
Q 019586           66 AYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCK  111 (338)
Q Consensus        66 ~yekAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~  111 (338)
                      .+++.+.-+|++.++-+.++..|...|+.++|.+++-..++.+-..
T Consensus       224 ~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~  269 (304)
T COG3118         224 DLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGF  269 (304)
T ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccc
Confidence            5666677789999999999999999999999999998888776543

>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT

Probab=96.99  E-value=0.01  Score=50.59  Aligned_cols=90  Identities=19%  Similarity=0.241  Sum_probs=70.8

Q ss_pred             CCCHHHHHHHHHHHHHhCCCCH-------H----HH--HHHHHHHHcCCHHHHHHHHHhhCcCCcCCCCCHHHHHHHHHH
Q 019586            3 QNNYIEAEDAYRRALSIAPDNN-------K----MC--NLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYER   69 (338)
Q Consensus         3 ~g~~eeAi~~y~kALeldPd~a-------~----a~--nLG~~y~~~G~~dEAi~~~~k~~p~~~d~lg~~deAi~~yek   69 (338)
                      .|-|++|...|++|+++.-..+       .    .|  .|+.++..+|+|++++..-              +.|+.+|.+
T Consensus        22 ~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA--------------~~aL~YFNR   87 (144)
T PF12968_consen   22 DGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSA--------------DRALRYFNR   87 (144)
T ss_dssp             HT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHH--------------HHHHHHHHH
T ss_pred             hhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHH--------------HHHHHHHhh
Confidence            4779999999999999853221       1    23  8999999999999999887              669999999


Q ss_pred             HHHhCCCCHHHH----HHHHHHHHHCCCHHHHHHHHHHHHc
Q 019586           70 AQQMLKDLESEM----MNKGGDRVEQSRLFDAFLGSSSIWQ  106 (338)
Q Consensus        70 AL~l~Pd~~~a~----~nLG~~l~~lGr~~eAi~~yekALk  106 (338)
                      -=+++.+....|    ++.+.++..+|+.++|+..|+.+-+
T Consensus        88 RGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agE  128 (144)
T PF12968_consen   88 RGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGE  128 (144)
T ss_dssp             H--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             ccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Confidence            999998866555    7789999999999999999998754

The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=96.99  E-value=0.0047  Score=53.88  Aligned_cols=67  Identities=15%  Similarity=0.150  Sum_probs=57.4

Q ss_pred             HHHHHHHHHhhCcCCcCCCCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCccc
Q 019586           39 IGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDLE---SEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDHI  114 (338)
Q Consensus        39 ~dEAi~~~~k~~p~~~d~lg~~deAi~~yekAL~l~Pd~~---~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~~  114 (338)
                      |.+|...+++         |+|.+|++.|+....--|-.+   .+.+.||.+|++.|++++|+..+++.++++|.++.+
T Consensus        14 y~~a~~~l~~---------~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~v   83 (142)
T PF13512_consen   14 YQEAQEALQK---------GNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNV   83 (142)
T ss_pred             HHHHHHHHHh---------CCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCc
Confidence            4455555554         899999999999988877644   788999999999999999999999999999999873

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=96.95  E-value=0.013  Score=58.46  Aligned_cols=133  Identities=12%  Similarity=0.070  Sum_probs=98.7

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcCCHHHHHHHHHhhCcCC---------------------------
Q 019586            2 QQNNYIEAEDAYRRALSIAPDNNKMC-NLGICLMKQGRIGEAKETLRRVKPAV---------------------------   53 (338)
Q Consensus         2 q~g~~eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k~~p~~---------------------------   53 (338)
                      .+|++..|..-..++++..|.+.... -.-.+|...|+|.+......++....                           
T Consensus       165 ~~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~  244 (400)
T COG3071         165 NRRDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNG  244 (400)
T ss_pred             hCCCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhcccc
Confidence            46889999999999999999999977 66678889999988887776521100                           


Q ss_pred             cC----------------------------CCCCHHHH-------------------------------HHHHHHHHHhC
Q 019586           54 AD----------------------------GPRGVDSH-------------------------------LKAYERAQQML   74 (338)
Q Consensus        54 ~d----------------------------~lg~~deA-------------------------------i~~yekAL~l~   74 (338)
                      .+                            .+|++++|                               ++..++.++..
T Consensus       245 ~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~~~~~~l~~~d~~~l~k~~e~~l~~h  324 (400)
T COG3071         245 SEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLCRLIPRLRPGDPEPLIKAAEKWLKQH  324 (400)
T ss_pred             chHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHHHHHhhcCCCCchHHHHHHHHHHHhC
Confidence            00                            03344444                               56666777777


Q ss_pred             CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCcc--cccchhhhcCccHHHHHhhhh
Q 019586           75 KDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDH--ILPTTNAIKTRDDFADENIDS  134 (338)
Q Consensus        75 Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~--~l~~l~~~~~~~~~A~e~~~~  134 (338)
                      |+.+..++.||..+++.+.|.+|..+|+.+++..|....  .++......+....+.+....
T Consensus       325 ~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~~g~~~~A~~~r~e  386 (400)
T COG3071         325 PEDPLLLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELADALDQLGEPEEAEQVRRE  386 (400)
T ss_pred             CCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCChHHHHHHHHH
Confidence            999999999999999999999999999999999998655  334334566666666544443

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=96.94  E-value=0.0073  Score=62.91  Aligned_cols=105  Identities=12%  Similarity=0.051  Sum_probs=85.2

Q ss_pred             CCCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcCCHHHHHHHHHhhCcCCcC-------------CCCCHHHHHHHHH
Q 019586            3 QNNYIEAEDAYRRALSIAPDNNKMC-NLGICLMKQGRIGEAKETLRRVKPAVAD-------------GPRGVDSHLKAYE   68 (338)
Q Consensus         3 ~g~~eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k~~p~~~d-------------~lg~~deAi~~ye   68 (338)
                      .|++++|+.+..+||+..|...+.| ..|.+|...|++.+|...++.+...+..             ..|+.++|...+.
T Consensus       207 ~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~  286 (517)
T PF12569_consen  207 LGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTAS  286 (517)
T ss_pred             hCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence            6899999999999999999999988 9999999999999999999985443332             3789999988887


Q ss_pred             HHHHhCCCCH-------HHH--HHHHHHHHHCCCHHHHHHHHHHHHcc
Q 019586           69 RAQQMLKDLE-------SEM--MNKGGDRVEQSRLFDAFLGSSSIWQP  107 (338)
Q Consensus        69 kAL~l~Pd~~-------~a~--~nLG~~l~~lGr~~eAi~~yekALkl  107 (338)
                      .-.+-+-+..       -.|  ..-|.+|..+|++..|+..|..+.+.
T Consensus       287 ~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~  334 (517)
T PF12569_consen  287 LFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLKH  334 (517)
T ss_pred             hhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence            7655442111       133  44689999999999999999888765

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>KOG4234 consensus TPR repeat-containing protein [General function prediction only]

Probab=96.93  E-value=0.0042  Score=57.52  Aligned_cols=98  Identities=12%  Similarity=0.116  Sum_probs=75.8

Q ss_pred             CCCHHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCcccccc---hhhhcCccHHH
Q 019586           57 PRGVDSHLKAYERAQQMLKDLE-----SEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDHILPT---TNAIKTRDDFA  128 (338)
Q Consensus        57 lg~~deAi~~yekAL~l~Pd~~-----~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~~l~~---l~~~~~~~~~A  128 (338)
                      .|+|++|..-|..||++-|..+     ..|.|.|.+++++++++.|+..+.++++++|..-..+..   ++......+.+
T Consensus       108 ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ek~eea  187 (271)
T KOG4234|consen  108 NGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKMEKYEEA  187 (271)
T ss_pred             cccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhhhHHHH
Confidence            5677889999999999999866     457889999999999999999999999999977553322   13344556678


Q ss_pred             HHhhhhcccCCChhhhhhhhhhhhcc
Q 019586          129 DENIDSNVDVNPIVLSKHRSVKKLFP  154 (338)
Q Consensus       129 ~e~~~~al~~~P~~~~K~~~~~kl~~  154 (338)
                      .+.+...+..+|...........|-+
T Consensus       188 leDyKki~E~dPs~~ear~~i~rl~~  213 (271)
T KOG4234|consen  188 LEDYKKILESDPSRREAREAIARLPP  213 (271)
T ss_pred             HHHHHHHHHhCcchHHHHHHHHhcCH
Confidence            88898999999987765544444333

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=96.91  E-value=0.0082  Score=60.54  Aligned_cols=108  Identities=12%  Similarity=-0.053  Sum_probs=91.7

Q ss_pred             HHHHHHHHcCCHHHHHHHHHhhCcCCcC----------CCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHH
Q 019586           28 NLGICLMKQGRIGEAKETLRRVKPAVAD----------GPRGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDA   97 (338)
Q Consensus        28 nLG~~y~~~G~~dEAi~~~~k~~p~~~d----------~lg~~deAi~~yekAL~l~Pd~~~a~~nLG~~l~~lGr~~eA   97 (338)
                      .|-.++...+++++|+..|+++...+++          ..++-.+|+..+.++++..|.....+...+..++..++++.|
T Consensus       174 ~Ll~~l~~t~~~~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~~lA  253 (395)
T PF09295_consen  174 TLLKYLSLTQRYDEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKYELA  253 (395)
T ss_pred             HHHHHHhhcccHHHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHH
Confidence            6667778889999999999998877777          267889999999999999999999999999999999999999


Q ss_pred             HHHHHHHHccCCCCcc---cccchhhhcCccHHHHHhhhhc
Q 019586           98 FLGSSSIWQPQPCKDH---ILPTTNAIKTRDDFADENIDSN  135 (338)
Q Consensus        98 i~~yekALkl~P~~~~---~l~~l~~~~~~~~~A~e~~~~a  135 (338)
                      +.+.++++.+.|.+..   .++.+....++.+.|.-.++..
T Consensus       254 L~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~  294 (395)
T PF09295_consen  254 LEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSC  294 (395)
T ss_pred             HHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence            9999999999999876   3334456777777776555543

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.90  E-value=0.0025  Score=63.31  Aligned_cols=112  Identities=14%  Similarity=0.061  Sum_probs=81.3

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcCCHHHHHHHHHhhCcC--C-----------cC------------
Q 019586            2 QQNNYIEAEDAYRRALSIAPDNNKMC-NLGICLMKQGRIGEAKETLRRVKPA--V-----------AD------------   55 (338)
Q Consensus         2 q~g~~eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k~~p~--~-----------~d------------   55 (338)
                      ..|+|++|...|+.+..-+.-.++.+ ||+-|+..+|.|.||.....++...  .           .+            
T Consensus        69 hLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k~pL~~RLlfhlahklndEk~~~~fh~~Lq  148 (557)
T KOG3785|consen   69 HLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKSIAEKAPKTPLCIRLLFHLAHKLNDEKRILTFHSSLQ  148 (557)
T ss_pred             hhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCcHHHHHHHHHHHh
Confidence            46788888888888777554455555 8888888888888888777662110  0           00            


Q ss_pred             -----C---------CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCcc
Q 019586           56 -----G---------PRGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDH  113 (338)
Q Consensus        56 -----~---------lg~~deAi~~yekAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~  113 (338)
                           .         .-.|.+||..|.+.+.-+|+....-.+++.+|+++.-|+-+-..+.-.|+.-|+.+-
T Consensus       149 D~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~pdSti  220 (557)
T KOG3785|consen  149 DTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQFPDSTI  220 (557)
T ss_pred             hhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCCcHH
Confidence                 0         117788888888888888888777788888888888888888888777877777664

>PLN03218 maturation of RBCL 1; Provisional

Probab=96.89  E-value=0.016  Score=65.22  Aligned_cols=46  Identities=22%  Similarity=0.212  Sum_probs=21.6

Q ss_pred             CCCHHHHHHHHHHHHH----hCCCCHHHHHHHHHHHHcCCHHHHHHHHHh
Q 019586            3 QNNYIEAEDAYRRALS----IAPDNNKMCNLGICLMKQGRIGEAKETLRR   48 (338)
Q Consensus         3 ~g~~eeAi~~y~kALe----ldPd~a~a~nLG~~y~~~G~~dEAi~~~~k   48 (338)
                      .|++++|...|.+...    +.|+...+..+-.+|.+.|++++|...|+.
T Consensus       555 ~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~  604 (1060)
T PLN03218        555 SGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQM  604 (1060)
T ss_pred             CCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            3455555555555543    234322222444445555555555555554

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=96.87  E-value=0.02  Score=54.36  Aligned_cols=113  Identities=16%  Similarity=0.156  Sum_probs=91.5

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCCCHH----HHHHHHHHHHcCCHHHHHHHHHh---hCcCCcCC-----------------
Q 019586            1 MQQNNYIEAEDAYRRALSIAPDNNK----MCNLGICLMKQGRIGEAKETLRR---VKPAVADG-----------------   56 (338)
Q Consensus         1 mq~g~~eeAi~~y~kALeldPd~a~----a~nLG~~y~~~G~~dEAi~~~~k---~~p~~~d~-----------------   56 (338)
                      ++.|+|++|+..|+......|..+.    ...++.++++.+++++|+...++   ..|.+++.                 
T Consensus        45 L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs~~~~i~~  124 (254)
T COG4105          45 LQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLSYFFQIDD  124 (254)
T ss_pred             HhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhccCCc
Confidence            4679999999999999999887766    33999999999999999999998   56666652                 


Q ss_pred             ----CCCHHHHHHHHHHHHHhCCCCHH---------------H--HHHHHHHHHHCCCHHHHHHHHHHHHccCCCCcc
Q 019586           57 ----PRGVDSHLKAYERAQQMLKDLES---------------E--MMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDH  113 (338)
Q Consensus        57 ----lg~~deAi~~yekAL~l~Pd~~~---------------a--~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~  113 (338)
                          +.-..+|+..|+..|+-=|+..-               +  -+..|..|.+.|.+-.|+.-++.+++--|+...
T Consensus       125 ~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~~~v~e~y~~t~~  202 (254)
T COG4105         125 VTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAINRFEEVLENYPDTSA  202 (254)
T ss_pred             cccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHhccccccc
Confidence                23556778888888888887441               1  144678999999999999999999998777665

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=96.79  E-value=0.0026  Score=40.75  Aligned_cols=29  Identities=31%  Similarity=0.500  Sum_probs=22.4

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHhhCcCCcCCCCCHHHHHHHHHHHHHhCCC
Q 019586           27 CNLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKD   76 (338)
Q Consensus        27 ~nLG~~y~~~G~~dEAi~~~~k~~p~~~d~lg~~deAi~~yekAL~l~Pd   76 (338)
                      +++|.+|..+|++                     ++|+.+|++|++++|+
T Consensus         5 ~~~g~~~~~~~~~---------------------~~A~~~~~~al~~~p~   33 (34)
T PF00515_consen    5 YNLGNAYFQLGDY---------------------EEALEYYQRALELDPD   33 (34)
T ss_dssp             HHHHHHHHHTT-H---------------------HHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHhCCc---------------------hHHHHHHHHHHHHCcC
Confidence            3999999999999                     5556666668888886

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>PRK04841 transcriptional regulator MalT; Provisional

Probab=96.76  E-value=0.008  Score=65.35  Aligned_cols=108  Identities=17%  Similarity=0.047  Sum_probs=83.7

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCCHH-----H-HHHHHHHHHcCCHHHHHHHHHhhCcC-------Cc------------CC
Q 019586            2 QQNNYIEAEDAYRRALSIAPDNNK-----M-CNLGICLMKQGRIGEAKETLRRVKPA-------VA------------DG   56 (338)
Q Consensus         2 q~g~~eeAi~~y~kALeldPd~a~-----a-~nLG~~y~~~G~~dEAi~~~~k~~p~-------~~------------d~   56 (338)
                      ..|++++|..++++++...+....     . ..+|.++...|++++|...++++...       ..            ..
T Consensus       464 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~  543 (903)
T PRK04841        464 NDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFA  543 (903)
T ss_pred             hCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHH
Confidence            468999999999999986554322     2 28999999999999999999883321       10            03


Q ss_pred             CCCHHHHHHHHHHHHHhCCC--------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCC
Q 019586           57 PRGVDSHLKAYERAQQMLKD--------LESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQP  109 (338)
Q Consensus        57 lg~~deAi~~yekAL~l~Pd--------~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P  109 (338)
                      .|++++|...+++++.+-..        ....+..+|.++...|++++|..++++++.+..
T Consensus       544 ~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~  604 (903)
T PRK04841        544 QGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLS  604 (903)
T ss_pred             CCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhh
Confidence            79999999999999987322        123456789999999999999999999987644

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=96.71  E-value=0.0052  Score=64.61  Aligned_cols=106  Identities=14%  Similarity=0.019  Sum_probs=93.6

Q ss_pred             CCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHcCCHHHHHHHHHhhCcCCcC-------------CCCCHHHHHHHHH
Q 019586            3 QNNYIEAEDAYRRALSIAPDNNK-MCNLGICLMKQGRIGEAKETLRRVKPAVAD-------------GPRGVDSHLKAYE   68 (338)
Q Consensus         3 ~g~~eeAi~~y~kALeldPd~a~-a~nLG~~y~~~G~~dEAi~~~~k~~p~~~d-------------~lg~~deAi~~ye   68 (338)
                      .|+-++|..+.+.++..++.... +|-+|.+++...+|++|+++|+.+....++             ++++++-....-.
T Consensus        54 lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~  133 (700)
T KOG1156|consen   54 LGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRN  133 (700)
T ss_pred             ccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHH
Confidence            58889999999999999998888 449999999999999999999996655554             3789999999999


Q ss_pred             HHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccC
Q 019586           69 RAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQ  108 (338)
Q Consensus        69 kAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~  108 (338)
                      +.+++.|..-..|..++.++...|.+..|....+...+..
T Consensus       134 ~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~  173 (700)
T KOG1156|consen  134 QLLQLRPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQ  173 (700)
T ss_pred             HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            9999999999999999999999999999998877665554

>PLN03218 maturation of RBCL 1; Provisional

Probab=96.68  E-value=0.022  Score=64.14  Aligned_cols=50  Identities=10%  Similarity=-0.047  Sum_probs=25.6

Q ss_pred             CCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHc
Q 019586           57 PRGVDSHLKAYERAQQML-KDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQ  106 (338)
Q Consensus        57 lg~~deAi~~yekAL~l~-Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALk  106 (338)
                      .|++++|...|+++.+.. +.+...|..+...|.+.|++++|+..|.+..+
T Consensus       592 ~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~  642 (1060)
T PLN03218        592 AGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKK  642 (1060)
T ss_pred             CCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence            445555555555555443 22344555555555555555555555555443

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=96.66  E-value=0.0049  Score=53.61  Aligned_cols=79  Identities=13%  Similarity=0.054  Sum_probs=61.9

Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCccc-------ccchhhhcCccHHHHH
Q 019586           58 RGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDHI-------LPTTNAIKTRDDFADE  130 (338)
Q Consensus        58 g~~deAi~~yekAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~~-------l~~l~~~~~~~~~A~e  130 (338)
                      |+.+.|++.|.++|.+.|..+.+|+|.+.++.-+|+.++|+..+.+++++.-.....       .+.++..++..+.+..
T Consensus        57 g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~dd~AR~  136 (175)
T KOG4555|consen   57 GDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGNDDAARA  136 (175)
T ss_pred             cchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCchHHHHH
Confidence            344777777788999999999999999999999999999999999999997665431       1223456677777776


Q ss_pred             hhhhcc
Q 019586          131 NIDSNV  136 (338)
Q Consensus       131 ~~~~al  136 (338)
                      .+..+.
T Consensus       137 DFe~AA  142 (175)
T KOG4555|consen  137 DFEAAA  142 (175)
T ss_pred             hHHHHH
Confidence            666553

>smart00028 TPR Tetratricopeptide repeats

Probab=96.63  E-value=0.0031  Score=37.33  Aligned_cols=33  Identities=12%  Similarity=0.108  Sum_probs=30.2

Q ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCC
Q 019586           79 SEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCK  111 (338)
Q Consensus        79 ~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~  111 (338)
                      .+|+++|.++..+|++++|+.+|+++++++|.+
T Consensus         2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~~   34 (34)
T smart00028        2 EALYNLGNAYLKLGDYDEALEYYEKALELDPNN   34 (34)
T ss_pred             hHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCC
Confidence            578899999999999999999999999998853

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=96.50  E-value=0.0078  Score=38.13  Aligned_cols=30  Identities=17%  Similarity=0.278  Sum_probs=22.0

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHhhCcCCcCCCCCHHHHHHHHHHHHHhCCCC
Q 019586           27 CNLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDL   77 (338)
Q Consensus        27 ~nLG~~y~~~G~~dEAi~~~~k~~p~~~d~lg~~deAi~~yekAL~l~Pd~   77 (338)
                      +.+|.+|..+|+++                     +|+.+|+++++++|++
T Consensus         5 ~~lg~~~~~~~~~~---------------------~A~~~~~~al~l~p~~   34 (34)
T PF07719_consen    5 YYLGQAYYQLGNYE---------------------EAIEYFEKALELDPNN   34 (34)
T ss_dssp             HHHHHHHHHTT-HH---------------------HHHHHHHHHHHHSTTS
T ss_pred             HHHHHHHHHhCCHH---------------------HHHHHHHHHHHHCcCC
Confidence            39999999999994                     5555556688887764

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=96.49  E-value=0.0039  Score=41.16  Aligned_cols=29  Identities=14%  Similarity=-0.086  Sum_probs=24.8

Q ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHccC
Q 019586           80 EMMNKGGDRVEQSRLFDAFLGSSSIWQPQ  108 (338)
Q Consensus        80 a~~nLG~~l~~lGr~~eAi~~yekALkl~  108 (338)
                      +|.+||.+|..+|+|++|+.+|+++|.+.
T Consensus         1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~   29 (36)
T PF13176_consen    1 ALNNLGRIYRQQGDYEKAIEYYEQALALA   29 (36)
T ss_dssp             HHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence            57899999999999999999999966543

>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function

Probab=96.46  E-value=0.044  Score=50.74  Aligned_cols=93  Identities=20%  Similarity=0.142  Sum_probs=72.6

Q ss_pred             CCHHHHHHHHHHHHHh----CCCCHH---HH-HHHHHHHHcCCHHHHHHHHHhhCcCCcCCCCCHHHHHHHHHHHHHhCC
Q 019586            4 NNYIEAEDAYRRALSI----APDNNK---MC-NLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLK   75 (338)
Q Consensus         4 g~~eeAi~~y~kALel----dPd~a~---a~-nLG~~y~~~G~~dEAi~~~~k~~p~~~d~lg~~deAi~~yekAL~l~P   75 (338)
                      ..+++|++.|.-|+-.    ..+...   .+ .+|++|..+|+-+....+++              .|+..|++|++-..
T Consensus        91 Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~--------------~Al~~y~~a~~~e~  156 (214)
T PF09986_consen   91 RTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLR--------------KALEFYEEAYENED  156 (214)
T ss_pred             CCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHH--------------HHHHHHHHHHHhCc
Confidence            3578999999888764    233333   33 99999999999777777764              59999999998763


Q ss_pred             C------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCC
Q 019586           76 D------LESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPC  110 (338)
Q Consensus        76 d------~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~  110 (338)
                      .      ....++.+|.+..+.|++++|..+|.+++...-.
T Consensus       157 ~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~  197 (214)
T PF09986_consen  157 FPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKKA  197 (214)
T ss_pred             CCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCCC
Confidence            3      2366788999999999999999999999875433

>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.42  E-value=0.015  Score=54.97  Aligned_cols=112  Identities=11%  Similarity=0.083  Sum_probs=85.9

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCCHHH------H-HHHHHHHHc-CCHHHHHHHHHhhCcCCcC------------------
Q 019586            2 QQNNYIEAEDAYRRALSIAPDNNKM------C-NLGICLMKQ-GRIGEAKETLRRVKPAVAD------------------   55 (338)
Q Consensus         2 q~g~~eeAi~~y~kALeldPd~a~a------~-nLG~~y~~~-G~~dEAi~~~~k~~p~~~d------------------   55 (338)
                      +.++.++|+.++++||++..+....      + .+|.+|-.- .+++.||.+|+++..-+..                  
T Consensus        85 kk~~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~ya  164 (288)
T KOG1586|consen   85 KKVDPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYA  164 (288)
T ss_pred             hccChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHH
Confidence            3567899999999999997765552      2 888888764 8899999999983321111                  


Q ss_pred             -CCCCHHHHHHHHHHHHHhCCCCH-------HHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCcc
Q 019586           56 -GPRGVDSHLKAYERAQQMLKDLE-------SEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDH  113 (338)
Q Consensus        56 -~lg~~deAi~~yekAL~l~Pd~~-------~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~  113 (338)
                       .+++|.+|+..|++..+-.-++.       ..++.-|.+++-..+.-.|...+++...++|....
T Consensus       165 a~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~F~d  230 (288)
T KOG1586|consen  165 AQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPAFTD  230 (288)
T ss_pred             HHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCcccc
Confidence             27899999999999888665544       23455677888889999999999999999998766

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=96.40  E-value=0.042  Score=46.49  Aligned_cols=49  Identities=14%  Similarity=-0.032  Sum_probs=42.4

Q ss_pred             CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Q 019586           57 PRGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIW  105 (338)
Q Consensus        57 lg~~deAi~~yekAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekAL  105 (338)
                      .|++++|+..+++++.++|.+..+|..+-.+|..+|+..+|+..|++..
T Consensus        75 ~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~  123 (146)
T PF03704_consen   75 AGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYR  123 (146)
T ss_dssp             TT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred             ccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence            4566888999999999999999999999999999999999999998864

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>PRK04841 transcriptional regulator MalT; Provisional

Probab=96.39  E-value=0.014  Score=63.52  Aligned_cols=108  Identities=11%  Similarity=0.002  Sum_probs=83.7

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCC----HH--H-HHHHHHHHHcCCHHHHHHHHHhhCc----C-C---c-C----------
Q 019586            2 QQNNYIEAEDAYRRALSIAPDN----NK--M-CNLGICLMKQGRIGEAKETLRRVKP----A-V---A-D----------   55 (338)
Q Consensus         2 q~g~~eeAi~~y~kALeldPd~----a~--a-~nLG~~y~~~G~~dEAi~~~~k~~p----~-~---~-d----------   55 (338)
                      ..|++++|+.+|++++.+....    ..  . +++|.++..+|++++|...++++..    . .   + .          
T Consensus       503 ~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~  582 (903)
T PRK04841        503 CKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQL  582 (903)
T ss_pred             HcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHH
Confidence            3689999999999999874422    11  1 2899999999999999999988211    1 1   1 0          


Q ss_pred             --CCCCHHHHHHHHHHHHHhCCC-----CHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCC
Q 019586           56 --GPRGVDSHLKAYERAQQMLKD-----LESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQP  109 (338)
Q Consensus        56 --~lg~~deAi~~yekAL~l~Pd-----~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P  109 (338)
                        ..|++++|...+++++.+...     ...++..+|.++...|++++|..++.+++.+..
T Consensus       583 ~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~  643 (903)
T PRK04841        583 LWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLG  643 (903)
T ss_pred             HHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHh
Confidence              268999999999999887432     245667799999999999999999999977644

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=96.23  E-value=0.0058  Score=38.40  Aligned_cols=33  Identities=6%  Similarity=-0.090  Sum_probs=30.5

Q ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCC
Q 019586           79 SEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCK  111 (338)
Q Consensus        79 ~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~  111 (338)
                      ++++++|.++..+|++++|+..|+++++..|++
T Consensus         1 ~a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s   33 (33)
T PF13174_consen    1 DALYRLARCYYKLGDYDEAIEYFQRLIKRYPDS   33 (33)
T ss_dssp             HHHHHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred             CHHHHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence            478999999999999999999999999998864

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=96.22  E-value=0.016  Score=54.31  Aligned_cols=111  Identities=12%  Similarity=0.045  Sum_probs=77.3

Q ss_pred             HHHHHHHH--cCCHHHHHHHHHhhCcCCcCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Q 019586           28 NLGICLMK--QGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIW  105 (338)
Q Consensus        28 nLG~~y~~--~G~~dEAi~~~~k~~p~~~d~lg~~deAi~~yekAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekAL  105 (338)
                      .+..++..  +.+-+.|.-.|++  -..-+.+|-+.-|.-.|.+++.+.|+.+++++.||.-+...|+|+.|.+.|...+
T Consensus        49 rlsqlL~~~~l~~eeRA~l~fER--GvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~  126 (297)
T COG4785          49 RMSQILASRALTDEERAQLLFER--GVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVL  126 (297)
T ss_pred             HHHHHHHhccCChHHHHHHHHHh--cchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHh
Confidence            44444443  3334556666666  1223456667888888999999999999999999999999999999999999999


Q ss_pred             ccCCCCcccccch---hhhcCccHHHHHhhhhcccCCC
Q 019586          106 QPQPCKDHILPTT---NAIKTRDDFADENIDSNVDVNP  140 (338)
Q Consensus       106 kl~P~~~~~l~~l---~~~~~~~~~A~e~~~~al~~~P  140 (338)
                      +++|...-..-+.   ..--|+.+.|.+.+..-..-+|
T Consensus       127 ELDp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~  164 (297)
T COG4785         127 ELDPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQDDP  164 (297)
T ss_pred             ccCCcchHHHhccceeeeecCchHhhHHHHHHHHhcCC
Confidence            9999865421111   2234566666665555443344

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.20  E-value=0.024  Score=54.18  Aligned_cols=91  Identities=15%  Similarity=0.101  Sum_probs=67.1

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHhhCcCCcCCCCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHCCCHHHHHHHHH
Q 019586           26 MCNLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKD---LESEMMNKGGDRVEQSRLFDAFLGSS  102 (338)
Q Consensus        26 a~nLG~~y~~~G~~dEAi~~~~k~~p~~~d~lg~~deAi~~yekAL~l~Pd---~~~a~~nLG~~l~~lGr~~eAi~~ye  102 (338)
                      .|+.+.-+.+.|+|.+|+..|..                     -++--|+   .+.++|.||.+++.+|+|.+|...|.
T Consensus       144 ~Y~~A~~~~ksgdy~~A~~~F~~---------------------fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~  202 (262)
T COG1729         144 LYNAALDLYKSGDYAEAEQAFQA---------------------FIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFA  202 (262)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHH---------------------HHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHH
Confidence            57888888888888666666655                     4444444   55899999999999999999999999


Q ss_pred             HHHccCCCCccc------ccchhhhcCccHHHHHhhhhccc
Q 019586          103 SIWQPQPCKDHI------LPTTNAIKTRDDFADENIDSNVD  137 (338)
Q Consensus       103 kALkl~P~~~~~------l~~l~~~~~~~~~A~e~~~~al~  137 (338)
                      .+++-.|.++..      ++.+....+..+.|...+...+.
T Consensus       203 ~~~k~~P~s~KApdallKlg~~~~~l~~~d~A~atl~qv~k  243 (262)
T COG1729         203 RVVKDYPKSPKAPDALLKLGVSLGRLGNTDEACATLQQVIK  243 (262)
T ss_pred             HHHHhCCCCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence            999999998762      22224556666666655555443

>COG3898 Uncharacterized membrane-bound protein [Function unknown]

Probab=96.15  E-value=0.065  Score=54.04  Aligned_cols=110  Identities=15%  Similarity=0.059  Sum_probs=92.2

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcCCHHHHHHHHHh------hCcCCcC--------------CCCCH
Q 019586            2 QQNNYIEAEDAYRRALSIAPDNNKMC-NLGICLMKQGRIGEAKETLRR------VKPAVAD--------------GPRGV   60 (338)
Q Consensus         2 q~g~~eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k------~~p~~~d--------------~lg~~   60 (338)
                      ++|.++.|+.|-++|-+..|.-.+++ ..=......|+|+.|+++.+.      +.++..+              .-.+.
T Consensus       166 r~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp  245 (531)
T COG3898         166 RLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADP  245 (531)
T ss_pred             hcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCCh
Confidence            46889999999999999999988877 333456789999999999987      2233332              13478


Q ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCC
Q 019586           61 DSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCK  111 (338)
Q Consensus        61 deAi~~yekAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~  111 (338)
                      ..|.....+++++.|++..+-..-+..|++.|+..++-..++.+++..|.-
T Consensus       246 ~~Ar~~A~~a~KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP  296 (531)
T COG3898         246 ASARDDALEANKLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHP  296 (531)
T ss_pred             HHHHHHHHHHhhcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCCh
Confidence            889999999999999999999999999999999999999999999999863

>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]

Probab=96.13  E-value=0.022  Score=54.25  Aligned_cols=105  Identities=16%  Similarity=0.176  Sum_probs=82.8

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHhhCcCCcCCCCCHHHHHHHHHHHH-HhCCCCH----------HHHHHHHHHHHHCCCHH
Q 019586           27 CNLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQ-QMLKDLE----------SEMMNKGGDRVEQSRLF   95 (338)
Q Consensus        27 ~nLG~~y~~~G~~dEAi~~~~k~~p~~~d~lg~~deAi~~yekAL-~l~Pd~~----------~a~~nLG~~l~~lGr~~   95 (338)
                      +.-|+-+.++|+|.||+..|+              +|+.+++..+ +-.|..+          ..+.|+..+++..|+|-
T Consensus       182 ~q~GN~lfk~~~ykEA~~~Yr--------------eAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~y  247 (329)
T KOG0545|consen  182 HQEGNRLFKLGRYKEASSKYR--------------EAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYY  247 (329)
T ss_pred             HHhhhhhhhhccHHHHHHHHH--------------HHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHH
Confidence            378889999999999999884              4777776543 2234433          45688999999999999


Q ss_pred             HHHHHHHHHHccCCCCcccccch---hhhcCccHHHHHhhhhcccCCChhhhh
Q 019586           96 DAFLGSSSIWQPQPCKDHILPTT---NAIKTRDDFADENIDSNVDVNPIVLSK  145 (338)
Q Consensus        96 eAi~~yekALkl~P~~~~~l~~l---~~~~~~~~~A~e~~~~al~~~P~~~~K  145 (338)
                      +++++...+|...|.+...+...   .+.-|..+.|...+...+.++|...+.
T Consensus       248 evleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslasv  300 (329)
T KOG0545|consen  248 EVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLASV  300 (329)
T ss_pred             HHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHHH
Confidence            99999999999999988744332   456777888999999999999986653

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=96.13  E-value=0.05  Score=54.51  Aligned_cols=80  Identities=14%  Similarity=0.021  Sum_probs=57.2

Q ss_pred             CHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcCCHHHHHHHHHhhCcCCcCCCCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 019586            5 NYIEAEDAYRRALSIAPDNNKMC-NLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDLESEMMN   83 (338)
Q Consensus         5 ~~eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k~~p~~~d~lg~~deAi~~yekAL~l~Pd~~~a~~n   83 (338)
                      ++..=++..++.++..|+++..+ .||..+.+.+.|                     .+|..+|+.|+...|+ ...|..
T Consensus       309 d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k~~~w---------------------~kA~~~leaAl~~~~s-~~~~~~  366 (400)
T COG3071         309 DPEPLIKAAEKWLKQHPEDPLLLSTLGRLALKNKLW---------------------GKASEALEAALKLRPS-ASDYAE  366 (400)
T ss_pred             CchHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhHH---------------------HHHHHHHHHHHhcCCC-hhhHHH
Confidence            33444444444445555555444 555555555555                     7777777889999885 777888


Q ss_pred             HHHHHHHCCCHHHHHHHHHHHHc
Q 019586           84 KGGDRVEQSRLFDAFLGSSSIWQ  106 (338)
Q Consensus        84 LG~~l~~lGr~~eAi~~yekALk  106 (338)
                      +|.++-++|+..+|.++++.++.
T Consensus       367 la~~~~~~g~~~~A~~~r~e~L~  389 (400)
T COG3071         367 LADALDQLGEPEEAEQVRREALL  389 (400)
T ss_pred             HHHHHHHcCChHHHHHHHHHHHH
Confidence            99999999999999999999884

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=96.08  E-value=0.0095  Score=56.11  Aligned_cols=57  Identities=9%  Similarity=0.124  Sum_probs=53.8

Q ss_pred             CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCcc
Q 019586           57 PRGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDH  113 (338)
Q Consensus        57 lg~~deAi~~yekAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~  113 (338)
                      .++.+.|.+.|.+|+++-|+|...|+.+|....+.|+++.|.+.|++.++++|.+..
T Consensus         8 ~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~~   64 (287)
T COG4976           8 SGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDHG   64 (287)
T ss_pred             cCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccccc
Confidence            467789999999999999999999999999999999999999999999999998765

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=96.06  E-value=0.063  Score=55.25  Aligned_cols=100  Identities=15%  Similarity=0.038  Sum_probs=75.1

Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcCCHHHHHHHHHhhCcCCcC-----------------CCCCHHHHHH
Q 019586            4 NNYIEAEDAYRRALSIAPDNNKMC-NLGICLMKQGRIGEAKETLRRVKPAVAD-----------------GPRGVDSHLK   65 (338)
Q Consensus         4 g~~eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k~~p~~~d-----------------~lg~~deAi~   65 (338)
                      ...+.|.+.+....+..|+..-+. ..|.++...|+.++|+..|+++......                 .+.+|++|..
T Consensus       247 ~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~  326 (468)
T PF10300_consen  247 VPLEEAEELLEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAE  326 (468)
T ss_pred             CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHH
Confidence            456889999999999999888755 9999999999999999999984421111                 1568888888


Q ss_pred             HHHHHHHhCCCCHHH--HHHHHHHHHHCCCH-------HHHHHHHHHH
Q 019586           66 AYERAQQMLKDLESE--MMNKGGDRVEQSRL-------FDAFLGSSSI  104 (338)
Q Consensus        66 ~yekAL~l~Pd~~~a--~~nLG~~l~~lGr~-------~eAi~~yekA  104 (338)
                      +|.+.++.+. |..+  .|..|.++...|+.       ++|...|.++
T Consensus       327 ~f~~L~~~s~-WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~v  373 (468)
T PF10300_consen  327 YFLRLLKESK-WSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKV  373 (468)
T ss_pred             HHHHHHhccc-cHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHH
Confidence            8888888544 4433  34467788888888       6666666555

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=95.81  E-value=0.042  Score=56.67  Aligned_cols=100  Identities=18%  Similarity=0.052  Sum_probs=72.4

Q ss_pred             CCCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcCCHHHHHHHHHhhCc--------C------CcC------------
Q 019586            3 QNNYIEAEDAYRRALSIAPDNNKMC-NLGICLMKQGRIGEAKETLRRVKP--------A------VAD------------   55 (338)
Q Consensus         3 ~g~~eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k~~p--------~------~~d------------   55 (338)
                      ..+...-+++-++|++++|+.+++| -|+.  -...-..||+.+|+++..        .      ...            
T Consensus       181 ERnp~aRIkaA~eALei~pdCAdAYILLAE--EeA~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~~~~Rdt~~~  258 (539)
T PF04184_consen  181 ERNPQARIKAAKEALEINPDCADAYILLAE--EEASTIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEAWHRRDTNVL  258 (539)
T ss_pred             cCCHHHHHHHHHHHHHhhhhhhHHHhhccc--ccccCHHHHHHHHHHHHHHHHHhhchhhhhhcccchhhhhhccccchh
Confidence            4567888999999999999999988 4433  122335666666666110        0      000            


Q ss_pred             ------------CCCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHCCCHHHHHHHHHHH
Q 019586           56 ------------GPRGVDSHLKAYERAQQMLKD--LESEMMNKGGDRVEQSRLFDAFLGSSSI  104 (338)
Q Consensus        56 ------------~lg~~deAi~~yekAL~l~Pd--~~~a~~nLG~~l~~lGr~~eAi~~yekA  104 (338)
                                  .+|+.++|++.|+..++..|.  +..++++|-.+|+.+++|.++...+.+.
T Consensus       259 ~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kY  321 (539)
T PF04184_consen  259 VYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKY  321 (539)
T ss_pred             hhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHh
Confidence                        268999999999999887765  4578899999999999998888777664

The molecular function of this protein is uncertain.

>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=95.78  E-value=0.01  Score=56.05  Aligned_cols=79  Identities=15%  Similarity=0.043  Sum_probs=62.4

Q ss_pred             CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCcc---cccchhhhcCccHHHHHhhh
Q 019586           57 PRGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDH---ILPTTNAIKTRDDFADENID  133 (338)
Q Consensus        57 lg~~deAi~~yekAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~---~l~~l~~~~~~~~~A~e~~~  133 (338)
                      ..+|+.|+.+|.+||.++|..+..|.|.+.+|+++.+++.+....+++++++|+...   .++.....+.....++..+.
T Consensus        23 ~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~eaI~~Lq  102 (284)
T KOG4642|consen   23 PKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDEAIKVLQ  102 (284)
T ss_pred             hhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccHHHHHHH
Confidence            457799999999999999999999999999999999999999999999999999776   22332333444444544444


Q ss_pred             hc
Q 019586          134 SN  135 (338)
Q Consensus       134 ~a  135 (338)
                      .+
T Consensus       103 ra  104 (284)
T KOG4642|consen  103 RA  104 (284)
T ss_pred             HH
Confidence            43

>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]

Probab=95.77  E-value=0.022  Score=59.77  Aligned_cols=95  Identities=16%  Similarity=0.074  Sum_probs=71.3

Q ss_pred             CCCHHHHHHHHHHHHHhCCCCHH--HHHHHHHHHHcCCHHHHHHHHHhhCcCCcCCCCCHHHHHHHHHHHHHhCCCCHHH
Q 019586            3 QNNYIEAEDAYRRALSIAPDNNK--MCNLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDLESE   80 (338)
Q Consensus         3 ~g~~eeAi~~y~kALeldPd~a~--a~nLG~~y~~~G~~dEAi~~~~k~~p~~~d~lg~~deAi~~yekAL~l~Pd~~~a   80 (338)
                      +|+...|++++.+|+...|....  .-+|+.++...|-.                     -.|-..+.+++.++-.-+-.
T Consensus       620 ~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~---------------------~da~~~l~q~l~~~~sepl~  678 (886)
T KOG4507|consen  620 VGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLH---------------------LDATKLLLQALAINSSEPLT  678 (886)
T ss_pred             cCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhh---------------------ccHHHHHHHHHhhcccCchH
Confidence            35555666666666665554333  22666655555533                     56777888899999888899


Q ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHccCCCCcccccch
Q 019586           81 MMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDHILPTT  118 (338)
Q Consensus        81 ~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~~l~~l  118 (338)
                      ++.+|.+++.+.+.+.|+++|+.|++++|+++.+...+
T Consensus       679 ~~~~g~~~l~l~~i~~a~~~~~~a~~~~~~~~~~~~~l  716 (886)
T KOG4507|consen  679 FLSLGNAYLALKNISGALEAFRQALKLTTKCPECENSL  716 (886)
T ss_pred             HHhcchhHHHHhhhHHHHHHHHHHHhcCCCChhhHHHH
Confidence            99999999999999999999999999999998855443

>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]

Probab=95.70  E-value=0.024  Score=55.51  Aligned_cols=61  Identities=11%  Similarity=0.107  Sum_probs=57.0

Q ss_pred             CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCcccccc
Q 019586           57 PRGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDHILPT  117 (338)
Q Consensus        57 lg~~deAi~~yekAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~~l~~  117 (338)
                      .|+.++|...|+.|+.+.|++++++..+|......++.-+|-.||-+||.++|.+.+.+.+
T Consensus       129 ~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvn  189 (472)
T KOG3824|consen  129 DGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVN  189 (472)
T ss_pred             ccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhh
Confidence            5788999999999999999999999999999999999999999999999999999885544

>KOG2610 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.64  E-value=0.085  Score=52.37  Aligned_cols=102  Identities=16%  Similarity=-0.033  Sum_probs=86.6

Q ss_pred             CCCHHHHHHHHHHHHHhCCCCHHHHH-HHHHHHHcCCHHHHHHHHHhhCcC-CcCC----------------CCCHHHHH
Q 019586            3 QNNYIEAEDAYRRALSIAPDNNKMCN-LGICLMKQGRIGEAKETLRRVKPA-VADG----------------PRGVDSHL   64 (338)
Q Consensus         3 ~g~~eeAi~~y~kALeldPd~a~a~n-LG~~y~~~G~~dEAi~~~~k~~p~-~~d~----------------lg~~deAi   64 (338)
                      .|++-+|...+++.+.-.|.+--+++ --.++...|+.+.-...++++.|. +++.                .|-|++|.
T Consensus       116 ~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~dAE  195 (491)
T KOG2610|consen  116 RGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDDAE  195 (491)
T ss_pred             cccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchhHH
Confidence            47777888888999999998887773 334667889999999999998887 4442                68999999


Q ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Q 019586           65 KAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSI  104 (338)
Q Consensus        65 ~~yekAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekA  104 (338)
                      +...+|++++|.+..+...++-++...|++.++.+...+.
T Consensus       196 k~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~t  235 (491)
T KOG2610|consen  196 KQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKT  235 (491)
T ss_pred             HHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhc
Confidence            9999999999999999999999999999999999887653

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.59  E-value=0.034  Score=55.45  Aligned_cols=139  Identities=12%  Similarity=0.052  Sum_probs=95.1

Q ss_pred             CCCHHHHHHHHHHHHHhCCCCHHHH--HHHHHHHHcCCHHHHHHHHHhhC-cCCcCC------------CCCHHHHHHHH
Q 019586            3 QNNYIEAEDAYRRALSIAPDNNKMC--NLGICLMKQGRIGEAKETLRRVK-PAVADG------------PRGVDSHLKAY   67 (338)
Q Consensus         3 ~g~~eeAi~~y~kALeldPd~a~a~--nLG~~y~~~G~~dEAi~~~~k~~-p~~~d~------------lg~~deAi~~y   67 (338)
                      ..+|+.|+.+++-.+.++....+-.  =+|.|+..+|+|++|...|.-+. .+++++            +|.|.+|....
T Consensus        35 ~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~~~  114 (557)
T KOG3785|consen   35 NRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKSIA  114 (557)
T ss_pred             cccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHHHH
Confidence            3579999999998886654433322  78999999999999999999854 344442            67888887666


Q ss_pred             HHHH--------------HhC------------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCcc---cccch
Q 019586           68 ERAQ--------------QML------------KDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDH---ILPTT  118 (338)
Q Consensus        68 ekAL--------------~l~------------Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~---~l~~l  118 (338)
                      ++|-              +++            .|..+-...|+.+++..-.|.+|++.|.++|.-+|+.-.   ..+..
T Consensus       115 ~ka~k~pL~~RLlfhlahklndEk~~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~ALC  194 (557)
T KOG3785|consen  115 EKAPKTPLCIRLLFHLAHKLNDEKRILTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVYMALC  194 (557)
T ss_pred             hhCCCChHHHHHHHHHHHHhCcHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHHHHHH
Confidence            5542              222            112233466777888888999999999999999987544   12222


Q ss_pred             hhhcCccHHHHHhhhhcccCCCh
Q 019586          119 NAIKTRDDFADENIDSNVDVNPI  141 (338)
Q Consensus       119 ~~~~~~~~~A~e~~~~al~~~P~  141 (338)
                      ..+..-.+++.+.+.--+..-|.
T Consensus       195 yyKlDYydvsqevl~vYL~q~pd  217 (557)
T KOG3785|consen  195 YYKLDYYDVSQEVLKVYLRQFPD  217 (557)
T ss_pred             HHhcchhhhHHHHHHHHHHhCCC
Confidence            45666667776665554444443

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=95.25  E-value=0.032  Score=36.56  Aligned_cols=31  Identities=16%  Similarity=0.029  Sum_probs=27.1

Q ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHccC
Q 019586           78 ESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQ  108 (338)
Q Consensus        78 ~~a~~nLG~~l~~lGr~~eAi~~yekALkl~  108 (338)
                      ..++++||.+|..+|++++|+.++++++.+.
T Consensus         2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~~   32 (42)
T PF13374_consen    2 ASALNNLANAYRAQGRYEEALELLEEALEIR   32 (42)
T ss_dssp             HHHHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhhcchhhHHHHHHHHHH
Confidence            4678999999999999999999999998763

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=95.19  E-value=0.042  Score=34.84  Aligned_cols=22  Identities=32%  Similarity=0.366  Sum_probs=15.9

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHh
Q 019586           27 CNLGICLMKQGRIGEAKETLRR   48 (338)
Q Consensus        27 ~nLG~~y~~~G~~dEAi~~~~k   48 (338)
                      +.+|.+|..+|++++|+.+|++
T Consensus         5 ~~lg~~y~~~~~~~~A~~~~~~   26 (34)
T PF13181_consen    5 YNLGKIYEQLGDYEEALEYFEK   26 (34)
T ss_dssp             HHHHHHHHHTTSHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHH
Confidence            3899999999999554444433

...

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=95.06  E-value=0.12  Score=43.63  Aligned_cols=47  Identities=32%  Similarity=0.391  Sum_probs=40.9

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcCCHHHHHHHHHh
Q 019586            2 QQNNYIEAEDAYRRALSIAPDNNKMC-NLGICLMKQGRIGEAKETLRR   48 (338)
Q Consensus         2 q~g~~eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k   48 (338)
                      ..|++++|+.++++++.++|.+-.+| .+-.+|..+|+..+|+..|++
T Consensus        74 ~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~  121 (146)
T PF03704_consen   74 EAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYER  121 (146)
T ss_dssp             HTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred             hccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHH
Confidence            36899999999999999999999988 999999999999999999976

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=94.96  E-value=0.06  Score=55.96  Aligned_cols=91  Identities=18%  Similarity=0.140  Sum_probs=77.0

Q ss_pred             CHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcCCHHHHHHHHHhhCcCCcCCCCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 019586            5 NYIEAEDAYRRALSIAPDNNKMC-NLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDLESEMMN   83 (338)
Q Consensus         5 ~~eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k~~p~~~d~lg~~deAi~~yekAL~l~Pd~~~a~~n   83 (338)
                      .+..|+..|.+++..-|+....+ |++.++++.+ |                 .|+.-.|+.....|++++|....+|+.
T Consensus       389 ~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRk-W-----------------~~d~~~AlrDch~Alrln~s~~kah~~  450 (758)
T KOG1310|consen  389 IVSGAISHYSRAIQYVPDAIYLLENRAAALMKRK-W-----------------RGDSYLALRDCHVALRLNPSIQKAHFR  450 (758)
T ss_pred             HHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhh-c-----------------cccHHHHHHhHHhhccCChHHHHHHHH
Confidence            46679999999999999888866 9988887764 3                 234467888888999999999999999


Q ss_pred             HHHHHHHCCCHHHHHHHHHHHHccCCCCcc
Q 019586           84 KGGDRVEQSRLFDAFLGSSSIWQPQPCKDH  113 (338)
Q Consensus        84 LG~~l~~lGr~~eAi~~yekALkl~P~~~~  113 (338)
                      |+.++.+++++.+|+.|...+....|.+..
T Consensus       451 la~aL~el~r~~eal~~~~alq~~~Ptd~a  480 (758)
T KOG1310|consen  451 LARALNELTRYLEALSCHWALQMSFPTDVA  480 (758)
T ss_pred             HHHHHHHHhhHHHhhhhHHHHhhcCchhhh
Confidence            999999999999999999888888885544

>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B

Probab=94.71  E-value=0.14  Score=41.00  Aligned_cols=51  Identities=10%  Similarity=-0.055  Sum_probs=44.3

Q ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCcc
Q 019586           63 HLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDH  113 (338)
Q Consensus        63 Ai~~yekAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~  113 (338)
                      .+..++++++.+|++..+.+.++..+...|++++|++.+-.+++.++....
T Consensus         7 ~~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~   57 (90)
T PF14561_consen    7 DIAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYED   57 (90)
T ss_dssp             HHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCC
T ss_pred             cHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccc
Confidence            467889999999999999999999999999999999999999999987643

>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]

Probab=94.64  E-value=0.21  Score=51.50  Aligned_cols=84  Identities=12%  Similarity=0.153  Sum_probs=61.8

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcCCHHHHHHHHHhhCcCC----cC-----------CCCCHHHHHH
Q 019586            2 QQNNYIEAEDAYRRALSIAPDNNKMC-NLGICLMKQGRIGEAKETLRRVKPAV----AD-----------GPRGVDSHLK   65 (338)
Q Consensus         2 q~g~~eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k~~p~~----~d-----------~lg~~deAi~   65 (338)
                      ++++++....+|++-|+..|.+...| .+|..-..+|+++.|...|.-+....    |.           ..|.++.|..
T Consensus       449 qL~efDRcRkLYEkfle~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~  528 (677)
T KOG1915|consen  449 QLREFDRCRKLYEKFLEFSPENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARA  528 (677)
T ss_pred             HHhhHHHHHHHHHHHHhcChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHH
Confidence            45678888888888888888888777 88888888888888888887733211    11           3678888888


Q ss_pred             HHHHHHHhCCCCHHHHHHHHH
Q 019586           66 AYERAQQMLKDLESEMMNKGG   86 (338)
Q Consensus        66 ~yekAL~l~Pd~~~a~~nLG~   86 (338)
                      .|++.|+..+... +|...+.
T Consensus       529 LYerlL~rt~h~k-vWisFA~  548 (677)
T KOG1915|consen  529 LYERLLDRTQHVK-VWISFAK  548 (677)
T ss_pred             HHHHHHHhcccch-HHHhHHH
Confidence            8888888776544 6655554

>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]

Probab=94.61  E-value=0.22  Score=51.48  Aligned_cols=106  Identities=12%  Similarity=0.034  Sum_probs=92.3

Q ss_pred             CCCHHHHHHHHHHHHHhCCC----CHHHH-HHHHHHHHcCCHHHHHHHHHhhCcCCcC------------CCCCHHHHHH
Q 019586            3 QNNYIEAEDAYRRALSIAPD----NNKMC-NLGICLMKQGRIGEAKETLRRVKPAVAD------------GPRGVDSHLK   65 (338)
Q Consensus         3 ~g~~eeAi~~y~kALeldPd----~a~a~-nLG~~y~~~G~~dEAi~~~~k~~p~~~d------------~lg~~deAi~   65 (338)
                      ..+.+.+...|+.+|.+=|.    ++..| -.+....++.++..|...+-.+....|.            .+++++....
T Consensus       379 ~ed~ertr~vyq~~l~lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRk  458 (677)
T KOG1915|consen  379 AEDVERTRQVYQACLDLIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRK  458 (677)
T ss_pred             hhhHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHH
Confidence            45778899999999999884    45555 8888889999999999999886555544            3789999999


Q ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccC
Q 019586           66 AYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQ  108 (338)
Q Consensus        66 ~yekAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~  108 (338)
                      .|++-|+..|.+..+|...|..-..+|+.+.|...|.-|+...
T Consensus       459 LYEkfle~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp  501 (677)
T KOG1915|consen  459 LYEKFLEFSPENCYAWSKYAELETSLGDTDRARAIFELAISQP  501 (677)
T ss_pred             HHHHHHhcChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCc
Confidence            9999999999999999999999999999999999999988654

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=94.60  E-value=0.29  Score=47.15  Aligned_cols=110  Identities=14%  Similarity=0.081  Sum_probs=73.5

Q ss_pred             CCCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcCCHHHHHHHHHhhCcCCcC---------------CCCCHHHHHHH
Q 019586            3 QNNYIEAEDAYRRALSIAPDNNKMC-NLGICLMKQGRIGEAKETLRRVKPAVAD---------------GPRGVDSHLKA   66 (338)
Q Consensus         3 ~g~~eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k~~p~~~d---------------~lg~~deAi~~   66 (338)
                      -|++++|.....+..     +-+.. .--.|+.++.+++-|+..+++....+-+               .-+.+.+|.-+
T Consensus       121 ~~~~deAl~~~~~~~-----~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~ided~tLtQLA~awv~la~ggek~qdAfyi  195 (299)
T KOG3081|consen  121 DGDFDEALKALHLGE-----NLEAAALNVQILLKMHRFDLAEKELKKMQQIDEDATLTQLAQAWVKLATGGEKIQDAFYI  195 (299)
T ss_pred             CCChHHHHHHHhccc-----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhccchhhhhHHHH
Confidence            355666665554421     22222 2234556666677777766664333322               13467888888


Q ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCcccccc
Q 019586           67 YERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDHILPT  117 (338)
Q Consensus        67 yekAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~~l~~  117 (338)
                      |++.-+--|..+..++.++.+++.+|+|++|...++.+|.-++++++.+.+
T Consensus       196 feE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~N  246 (299)
T KOG3081|consen  196 FEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLAN  246 (299)
T ss_pred             HHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHH
Confidence            888777556677888888889999999999999999999999988885544

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=94.48  E-value=0.19  Score=47.79  Aligned_cols=67  Identities=13%  Similarity=0.070  Sum_probs=52.1

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHhhCcCCcCCCCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHCCCHHHHHHHHH
Q 019586           26 MCNLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDL---ESEMMNKGGDRVEQSRLFDAFLGSS  102 (338)
Q Consensus        26 a~nLG~~y~~~G~~dEAi~~~~k~~p~~~d~lg~~deAi~~yekAL~l~Pd~---~~a~~nLG~~l~~lGr~~eAi~~ye  102 (338)
                      +|+-|......|+|++|+..|                     +......|-.   ..+...++.++++.+++++|+...+
T Consensus        37 LY~~g~~~L~~gn~~~A~~~f---------------------e~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~d   95 (254)
T COG4105          37 LYNEGLTELQKGNYEEAIKYF---------------------EALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYID   95 (254)
T ss_pred             HHHHHHHHHhcCCHHHHHHHH---------------------HHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHH
Confidence            457777777777775555555                     4455555543   4778899999999999999999999


Q ss_pred             HHHccCCCCcc
Q 019586          103 SIWQPQPCKDH  113 (338)
Q Consensus       103 kALkl~P~~~~  113 (338)
                      +.+++.|.++.
T Consensus        96 rFi~lyP~~~n  106 (254)
T COG4105          96 RFIRLYPTHPN  106 (254)
T ss_pred             HHHHhCCCCCC
Confidence            99999999887

>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=94.36  E-value=0.42  Score=44.05  Aligned_cols=82  Identities=11%  Similarity=0.136  Sum_probs=56.6

Q ss_pred             HHHHHHHHcCCHHHHHHHHHhhCcCCcC----------------CCCCHHHHHHHHHHHHHhCCCCHHH-HHHHHHHHHH
Q 019586           28 NLGICLMKQGRIGEAKETLRRVKPAVAD----------------GPRGVDSHLKAYERAQQMLKDLESE-MMNKGGDRVE   90 (338)
Q Consensus        28 nLG~~y~~~G~~dEAi~~~~k~~p~~~d----------------~lg~~deAi~~yekAL~l~Pd~~~a-~~nLG~~l~~   90 (338)
                      .++-.+...|++++|+..++.......|                .++.+++|+..+....  ++++... -...|.++..
T Consensus        94 ~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~--~~~w~~~~~elrGDill~  171 (207)
T COG2976          94 ELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIK--EESWAAIVAELRGDILLA  171 (207)
T ss_pred             HHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccc--cccHHHHHHHHhhhHHHH
Confidence            6777778888888888888874433333                2667777777666542  2444443 3446888888


Q ss_pred             CCCHHHHHHHHHHHHccCCCC
Q 019586           91 QSRLFDAFLGSSSIWQPQPCK  111 (338)
Q Consensus        91 lGr~~eAi~~yekALkl~P~~  111 (338)
                      .|+-++|+..|+++++..+..
T Consensus       172 kg~k~~Ar~ay~kAl~~~~s~  192 (207)
T COG2976         172 KGDKQEARAAYEKALESDASP  192 (207)
T ss_pred             cCchHHHHHHHHHHHHccCCh
Confidence            888888888888888876443

>PRK10941 hypothetical protein; Provisional

Probab=94.16  E-value=0.24  Score=47.56  Aligned_cols=65  Identities=18%  Similarity=0.101  Sum_probs=58.3

Q ss_pred             HHHHHHHHcCCHHHHHHHHHhhCcCCcCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcc
Q 019586           28 NLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQP  107 (338)
Q Consensus        28 nLG~~y~~~G~~dEAi~~~~k~~p~~~d~lg~~deAi~~yekAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl  107 (338)
                      ||=.+|...++|                     +.|+.+.++.+.+.|+.+.-+--.|.+|.++|.+..|...++..++.
T Consensus       186 nLK~~~~~~~~~---------------------~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~  244 (269)
T PRK10941        186 TLKAALMEEKQM---------------------ELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQ  244 (269)
T ss_pred             HHHHHHHHcCcH---------------------HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHh
Confidence            667777777777                     77777888899999999999999999999999999999999999999


Q ss_pred             CCCCcc
Q 019586          108 QPCKDH  113 (338)
Q Consensus       108 ~P~~~~  113 (338)
                      .|+++.
T Consensus       245 ~P~dp~  250 (269)
T PRK10941        245 CPEDPI  250 (269)
T ss_pred             CCCchh
Confidence            999887

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=94.07  E-value=0.44  Score=45.51  Aligned_cols=87  Identities=9%  Similarity=-0.013  Sum_probs=61.0

Q ss_pred             HHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcCCHHHHHHHHHhhCcCCcCCCCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 019586            6 YIEAEDAYRRALSIAPDNNKMC-NLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDLESEMMNK   84 (338)
Q Consensus         6 ~eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k~~p~~~d~lg~~deAi~~yekAL~l~Pd~~~a~~nL   84 (338)
                      .++|...|.+|++-.+-....| ..|.+-...++                    +.+-|...|+++++.-|.....|...
T Consensus        17 ~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~--------------------d~~~A~~Ife~glk~f~~~~~~~~~Y   76 (280)
T PF05843_consen   17 IEAARKVFKRARKDKRCTYHVYVAYALMEYYCNK--------------------DPKRARKIFERGLKKFPSDPDFWLEY   76 (280)
T ss_dssp             HHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS---------------------HHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred             hHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCC--------------------CHHHHHHHHHHHHHHCCCCHHHHHHH
Confidence            4667777777764433333444 55555444222                    22458888888999999999999999


Q ss_pred             HHHHHHCCCHHHHHHHHHHHHccCCCCc
Q 019586           85 GGDRVEQSRLFDAFLGSSSIWQPQPCKD  112 (338)
Q Consensus        85 G~~l~~lGr~~eAi~~yekALkl~P~~~  112 (338)
                      ...+...|+.+.|...|++++..-|...
T Consensus        77 ~~~l~~~~d~~~aR~lfer~i~~l~~~~  104 (280)
T PF05843_consen   77 LDFLIKLNDINNARALFERAISSLPKEK  104 (280)
T ss_dssp             HHHHHHTT-HHHHHHHHHHHCCTSSCHH
T ss_pred             HHHHHHhCcHHHHHHHHHHHHHhcCchh
Confidence            9999999999999999999998755543

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=94.06  E-value=0.015  Score=57.35  Aligned_cols=57  Identities=9%  Similarity=0.047  Sum_probs=54.6

Q ss_pred             CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCcc
Q 019586           57 PRGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDH  113 (338)
Q Consensus        57 lg~~deAi~~yekAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~  113 (338)
                      .|.++.|+..|..||+++|..+..|...+.+++++++...|++.|..+++++|+.+.
T Consensus       127 ~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~  183 (377)
T KOG1308|consen  127 DGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAK  183 (377)
T ss_pred             CcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCccccc
Confidence            567899999999999999999999999999999999999999999999999999876

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=94.05  E-value=0.08  Score=34.76  Aligned_cols=21  Identities=33%  Similarity=0.371  Sum_probs=17.0

Q ss_pred             HHHHHHHHcCCHHHHHHHHHh
Q 019586           28 NLGICLMKQGRIGEAKETLRR   48 (338)
Q Consensus        28 nLG~~y~~~G~~dEAi~~~~k   48 (338)
                      +||.+|..+|+|++|+.+|++
T Consensus         4 ~Lg~~~~~~g~~~~Ai~~y~~   24 (36)
T PF13176_consen    4 NLGRIYRQQGDYEKAIEYYEQ   24 (36)
T ss_dssp             HHHHHHHHCT-HHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHH
Confidence            899999999999777777666

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=93.85  E-value=0.1  Score=52.31  Aligned_cols=107  Identities=14%  Similarity=0.128  Sum_probs=80.8

Q ss_pred             CCHHHHHHHHHHHHHhCCCCHH------HH-HHHHHHHHcCCHHHHHHHHHhhCc---CCc--C----------------
Q 019586            4 NNYIEAEDAYRRALSIAPDNNK------MC-NLGICLMKQGRIGEAKETLRRVKP---AVA--D----------------   55 (338)
Q Consensus         4 g~~eeAi~~y~kALeldPd~a~------a~-nLG~~y~~~G~~dEAi~~~~k~~p---~~~--d----------------   55 (338)
                      +.|++++++|+.|+.+.-.+.+      .| .||..|....++++|.-+..++..   ...  +                
T Consensus       136 s~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaVa  215 (518)
T KOG1941|consen  136 SVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVA  215 (518)
T ss_pred             HHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHH
Confidence            5688999999999998544433      34 999999999999999988877221   111  1                


Q ss_pred             --CCCCHHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCC
Q 019586           56 --GPRGVDSHLKAYERAQQML------KDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPC  110 (338)
Q Consensus        56 --~lg~~deAi~~yekAL~l~------Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~  110 (338)
                        .+|+.-.|.++.++|.++.      +-....+.-+|.+|...|+.+.|+.-|+.|...--.
T Consensus       216 lR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m~~  278 (518)
T KOG1941|consen  216 LRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAMGTMAS  278 (518)
T ss_pred             HHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHHhh
Confidence              2788888888888888764      223455677899999999999999999998766443

>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=93.83  E-value=0.4  Score=45.84  Aligned_cols=100  Identities=13%  Similarity=0.132  Sum_probs=61.7

Q ss_pred             CCHHHHHHHHHHHHHhCCCCHH------HH-HHHHHHHHcCCHHHHHHHHHhhCc-----CCcC-------------CCC
Q 019586            4 NNYIEAEDAYRRALSIAPDNNK------MC-NLGICLMKQGRIGEAKETLRRVKP-----AVAD-------------GPR   58 (338)
Q Consensus         4 g~~eeAi~~y~kALeldPd~a~------a~-nLG~~y~~~G~~dEAi~~~~k~~p-----~~~d-------------~lg   58 (338)
                      ++|++|..++.+|++-..++..      .| ..|..+.....|.|+..+|+++.-     ..++             .--
T Consensus        45 k~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~GspdtAAmaleKAak~lenv  124 (308)
T KOG1585|consen   45 KKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECGSPDTAAMALEKAAKALENV  124 (308)
T ss_pred             ccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcC
Confidence            4677777777777765444333      22 666667777788888888877322     2222             023


Q ss_pred             CHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHCCCHHHHHHHHHH
Q 019586           59 GVDSHLKAYERAQQMLKDLE------SEMMNKGGDRVEQSRLFDAFLGSSS  103 (338)
Q Consensus        59 ~~deAi~~yekAL~l~Pd~~------~a~~nLG~~l~~lGr~~eAi~~yek  103 (338)
                      +.++|+..|++++.+--...      +.+-..+.+|.+..+|+||-..+.+
T Consensus       125 ~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lK  175 (308)
T KOG1585|consen  125 KPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAATAFLK  175 (308)
T ss_pred             CHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHHHHHH
Confidence            67777788877776643322      2234456677777777777766654

>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A

Probab=93.78  E-value=0.11  Score=37.77  Aligned_cols=35  Identities=6%  Similarity=-0.065  Sum_probs=30.8

Q ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCcc
Q 019586           79 SEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDH  113 (338)
Q Consensus        79 ~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~  113 (338)
                      +.++.++..++++|+|.+|..+.+.+|+++|++.+
T Consensus         2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Q   36 (53)
T PF14853_consen    2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQ   36 (53)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HH
T ss_pred             hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHH
Confidence            46788999999999999999999999999999977

>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]

Probab=93.73  E-value=0.34  Score=52.98  Aligned_cols=110  Identities=16%  Similarity=0.158  Sum_probs=84.8

Q ss_pred             CCCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcCCHHHHHHHHHhhC--cCCcC-----------CCCCHHHHHHHHH
Q 019586            3 QNNYIEAEDAYRRALSIAPDNNKMC-NLGICLMKQGRIGEAKETLRRVK--PAVAD-----------GPRGVDSHLKAYE   68 (338)
Q Consensus         3 ~g~~eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k~~--p~~~d-----------~lg~~deAi~~ye   68 (338)
                      .+++..|.....+.++..|+..-+- --|.++.++|++++|..+++...  +.+-+           .++++++|..+|+
T Consensus        22 ~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~~Ye  101 (932)
T KOG2053|consen   22 SSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVHLYE  101 (932)
T ss_pred             hHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHHHHH
Confidence            4678999999999999999877766 77889999999999998888832  22211           2789999999999


Q ss_pred             HHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCcc
Q 019586           69 RAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDH  113 (338)
Q Consensus        69 kAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~  113 (338)
                      ++++..|. .+-++.+=.+|.+-+.|.+=-+.--+..+..|..+.
T Consensus       102 ~~~~~~P~-eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~y  145 (932)
T KOG2053|consen  102 RANQKYPS-EELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAY  145 (932)
T ss_pred             HHHhhCCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccc
Confidence            99999998 777677777788877776555444444456777665

>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=93.64  E-value=0.34  Score=46.02  Aligned_cols=103  Identities=16%  Similarity=0.127  Sum_probs=66.4

Q ss_pred             CCHHHHHHHHHHHHHhCC--CCH----HHH-HHHHHHHHcCCHHHHHHHHHhhCcCCcCCCCCHHHHHHHHHHHHHhCCC
Q 019586            4 NNYIEAEDAYRRALSIAP--DNN----KMC-NLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKD   76 (338)
Q Consensus         4 g~~eeAi~~y~kALeldP--d~a----~a~-nLG~~y~~~G~~dEAi~~~~k~~p~~~d~lg~~deAi~~yekAL~l~Pd   76 (338)
                      ++|++|.++|.+|-.+..  .+.    .++ ..+.++.+.|.-.+|...|-.+..-+  ...+..+|+.+++++|++--+
T Consensus        28 ~k~eeAadl~~~Aan~yklaK~w~~AG~aflkaA~~h~k~~skhDaat~YveA~~cy--kk~~~~eAv~cL~~aieIyt~  105 (288)
T KOG1586|consen   28 NKYEEAAELYERAANMYKLAKNWSAAGDAFLKAADLHLKAGSKHDAATTYVEAANCY--KKVDPEEAVNCLEKAIEIYTD  105 (288)
T ss_pred             cchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHh--hccChHHHHHHHHHHHHHHHh
Confidence            578999999999866431  111    122 67777777776333333332211111  123668999999999998655


Q ss_pred             CH------HHHHHHHHHHHHC-CCHHHHHHHHHHHHccC
Q 019586           77 LE------SEMMNKGGDRVEQ-SRLFDAFLGSSSIWQPQ  108 (338)
Q Consensus        77 ~~------~a~~nLG~~l~~l-Gr~~eAi~~yekALkl~  108 (338)
                      -.      .-|..+|.+|... .+++.|+.+|+.+-+.-
T Consensus       106 ~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~y  144 (288)
T KOG1586|consen  106 MGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYY  144 (288)
T ss_pred             hhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence            43      3345688887755 89999999999886543

>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]

Probab=93.28  E-value=0.14  Score=50.28  Aligned_cols=63  Identities=17%  Similarity=0.273  Sum_probs=46.5

Q ss_pred             CCCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcCCHHHHHHHHHhhCcCCcCCCCCHHHHHHHHHHHHHhCCCCHHHH
Q 019586            3 QNNYIEAEDAYRRALSIAPDNNKMC-NLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDLESEM   81 (338)
Q Consensus         3 ~g~~eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k~~p~~~d~lg~~deAi~~yekAL~l~Pd~~~a~   81 (338)
                      .|+.++|..+|+.|++++|++++.. .+|.+.-..+++                     -+|-.+|-+|+.+.|.+.+++
T Consensus       129 ~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~i---------------------v~ADq~Y~~ALtisP~nseAL  187 (472)
T KOG3824|consen  129 DGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEI---------------------VEADQCYVKALTISPGNSEAL  187 (472)
T ss_pred             ccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhh---------------------HhhhhhhheeeeeCCCchHHH
Confidence            5778888888888888888888866 777776666666                     455666667777778777777


Q ss_pred             HHHHH
Q 019586           82 MNKGG   86 (338)
Q Consensus        82 ~nLG~   86 (338)
                      .|...
T Consensus       188 vnR~R  192 (472)
T KOG3824|consen  188 VNRAR  192 (472)
T ss_pred             hhhhc
Confidence            66544

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=93.14  E-value=0.068  Score=33.32  Aligned_cols=29  Identities=28%  Similarity=0.401  Sum_probs=22.2

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHhhCcCCc
Q 019586           26 MCNLGICLMKQGRIGEAKETLRRVKPAVA   54 (338)
Q Consensus        26 a~nLG~~y~~~G~~dEAi~~~~k~~p~~~   54 (338)
                      .+++|.+|..+|++++|+..|+++...+|
T Consensus         3 ~~~~a~~~~~~g~~~~A~~~~~~~~~~~P   31 (33)
T PF13174_consen    3 LYRLARCYYKLGDYDEAIEYFQRLIKRYP   31 (33)
T ss_dssp             HHHHHHHHHHHCHHHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHHHCc
Confidence            35899999999999888777777544443

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=93.13  E-value=0.74  Score=44.41  Aligned_cols=109  Identities=12%  Similarity=0.036  Sum_probs=84.6

Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH----cCCHHHHHHHHHhhCcCCcC-------------CCCCHHHHHHH
Q 019586            4 NNYIEAEDAYRRALSIAPDNNKMCNLGICLMK----QGRIGEAKETLRRVKPAVAD-------------GPRGVDSHLKA   66 (338)
Q Consensus         4 g~~eeAi~~y~kALeldPd~a~a~nLG~~y~~----~G~~dEAi~~~~k~~p~~~d-------------~lg~~deAi~~   66 (338)
                      .+++-|+...++...++.+ +....|+.++.+    .+++.+|..+|+.....++.             .++++++|...
T Consensus       151 ~r~d~A~~~lk~mq~ided-~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~l  229 (299)
T KOG3081|consen  151 HRFDLAEKELKKMQQIDED-ATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESL  229 (299)
T ss_pred             HHHHHHHHHHHHHHccchH-HHHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHH
Confidence            4567788888888887643 223345555543    45688999999996664433             38899999999


Q ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHH-HHHHHccCCCCcc
Q 019586           67 YERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLG-SSSIWQPQPCKDH  113 (338)
Q Consensus        67 yekAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~-yekALkl~P~~~~  113 (338)
                      ++.|+.-++.+++.+.|+-.+-..+|+-.++..- ........|.++.
T Consensus       230 L~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~~p~h~~  277 (299)
T KOG3081|consen  230 LEEALDKDAKDPETLANLIVLALHLGKDAEVTERNLSQLKLSHPEHPF  277 (299)
T ss_pred             HHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCcchH
Confidence            9999999999999999999999999999888765 5666677787766

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=92.92  E-value=0.66  Score=45.67  Aligned_cols=90  Identities=12%  Similarity=0.058  Sum_probs=65.4

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHcCCHHHHHHHHHhhC----cCCcCC-CC-------------CHHH
Q 019586            2 QQNNYIEAEDAYRRALSIAPDNNK-MCNLGICLMKQGRIGEAKETLRRVK----PAVADG-PR-------------GVDS   62 (338)
Q Consensus         2 q~g~~eeAi~~y~kALeldPd~a~-a~nLG~~y~~~G~~dEAi~~~~k~~----p~~~d~-lg-------------~~de   62 (338)
                      +.|+|++|+.-|..|++...-.+- +||++.|+...|+++.|+++...+.    .++|+. .|             -..-
T Consensus       156 kegqyEaAvqkFqaAlqvsGyqpllAYniALaHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~l  235 (459)
T KOG4340|consen  156 KEGQYEAAVQKFQAALQVSGYQPLLAYNLALAHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVL  235 (459)
T ss_pred             ccccHHHHHHHHHHHHhhcCCCchhHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHH
Confidence            568999999999999999776655 7899999999999999999887732    234441 11             1122


Q ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Q 019586           63 HLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGS  101 (338)
Q Consensus        63 Ai~~yekAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~y  101 (338)
                      ++..+.          ++++-.+.++++.|+++.|.+.+
T Consensus       236 h~Sal~----------eAfNLKaAIeyq~~n~eAA~eaL  264 (459)
T KOG4340|consen  236 HQSALV----------EAFNLKAAIEYQLRNYEAAQEAL  264 (459)
T ss_pred             HHHHHH----------HHhhhhhhhhhhcccHHHHHHHh
Confidence            222222          44455677899999999988765

>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]

Probab=92.62  E-value=0.1  Score=53.51  Aligned_cols=84  Identities=10%  Similarity=0.017  Sum_probs=63.9

Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCcccccch---hhhcCccHHHHHhhhh
Q 019586           58 RGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDHILPTT---NAIKTRDDFADENIDS  134 (338)
Q Consensus        58 g~~deAi~~yekAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~~l~~l---~~~~~~~~~A~e~~~~  134 (338)
                      ..++.|+..|.+||+++|+.+..+-+.+.++.+.+.|..|+..+.++++++|.....+-..   -...+....|...+..
T Consensus        18 ~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~~~A~~~l~~   97 (476)
T KOG0376|consen   18 KVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEFKKALLDLEK   97 (476)
T ss_pred             chHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHHHHHHHHHHH
Confidence            4679999999999999999999999999999999999999999999999999876633211   1223333334444555


Q ss_pred             cccCCCh
Q 019586          135 NVDVNPI  141 (338)
Q Consensus       135 al~~~P~  141 (338)
                      ...+.|.
T Consensus        98 ~~~l~Pn  104 (476)
T KOG0376|consen   98 VKKLAPN  104 (476)
T ss_pred             hhhcCcC
Confidence            5555554

>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=92.59  E-value=0.42  Score=44.05  Aligned_cols=76  Identities=25%  Similarity=0.240  Sum_probs=60.1

Q ss_pred             CCCHHHHHHHHHHHHHhCCCCHH----HHHHHHHHHHcCCHHHHHHHHHhhCc-CCcC-----------CCCCHHHHHHH
Q 019586            3 QNNYIEAEDAYRRALSIAPDNNK----MCNLGICLMKQGRIGEAKETLRRVKP-AVAD-----------GPRGVDSHLKA   66 (338)
Q Consensus         3 ~g~~eeAi~~y~kALeldPd~a~----a~nLG~~y~~~G~~dEAi~~~~k~~p-~~~d-----------~lg~~deAi~~   66 (338)
                      .|++++|+..++.++..-.|..-    ..+|+.++..+|++++|+..+..+.. .+..           ..|+.++|...
T Consensus       102 ~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~~~~~elrGDill~kg~k~~Ar~a  181 (207)
T COG2976         102 ANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESWAAIVAELRGDILLAKGDKQEARAA  181 (207)
T ss_pred             hccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccHHHHHHHHhhhHHHHcCchHHHHHH
Confidence            58899999999999875443322    22999999999999999999988433 2222           48999999999


Q ss_pred             HHHHHHhCCCCH
Q 019586           67 YERAQQMLKDLE   78 (338)
Q Consensus        67 yekAL~l~Pd~~   78 (338)
                      |++|++..++.+
T Consensus       182 y~kAl~~~~s~~  193 (207)
T COG2976         182 YEKALESDASPA  193 (207)
T ss_pred             HHHHHHccCChH
Confidence            999999986544

>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B

Probab=92.13  E-value=1.5  Score=35.01  Aligned_cols=45  Identities=24%  Similarity=0.230  Sum_probs=35.4

Q ss_pred             HHHHHHHHHHhCCCCHHHH-HHHHHHHHcCCHHHHHHHHHhhCcCC
Q 019586            9 AEDAYRRALSIAPDNNKMC-NLGICLMKQGRIGEAKETLRRVKPAV   53 (338)
Q Consensus         9 Ai~~y~kALeldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k~~p~~   53 (338)
                      .+..++++++.+|++..+. .+|..+...|++++|++.+-.+...+
T Consensus         7 ~~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~d   52 (90)
T PF14561_consen    7 DIAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRD   52 (90)
T ss_dssp             HHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-
T ss_pred             cHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence            4678899999999999855 99999999999988888887754443

>KOG2047 consensus mRNA splicing factor [RNA processing and modification]

Probab=91.95  E-value=1.2  Score=47.55  Aligned_cols=143  Identities=14%  Similarity=0.109  Sum_probs=94.9

Q ss_pred             CCCHHHHHHHHHHHHHhCCCCH----H-HHHHHHHHHHcCCHHHHHHHHHh--hCcCCcC--------------------
Q 019586            3 QNNYIEAEDAYRRALSIAPDNN----K-MCNLGICLMKQGRIGEAKETLRR--VKPAVAD--------------------   55 (338)
Q Consensus         3 ~g~~eeAi~~y~kALeldPd~a----~-a~nLG~~y~~~G~~dEAi~~~~k--~~p~~~d--------------------   55 (338)
                      .|+.+.|...|++|++..=...    . +|+-|..-....+++.|..+.++  ..|..+.                    
T Consensus       400 ~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlki  479 (835)
T KOG2047|consen  400 NGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKI  479 (835)
T ss_pred             cCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHH
Confidence            4667778888888877653222    2 33777777777778888887777  3443322                    


Q ss_pred             ---------CCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCc--ccccch------
Q 019586           56 ---------GPRGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKD--HILPTT------  118 (338)
Q Consensus        56 ---------~lg~~deAi~~yekAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~--~~l~~l------  118 (338)
                               ..|-++.-...|++.|.+.=-.|..-.|.|..+.+...+++|++.|++.+.+-+--.  +++..-      
T Consensus       480 Ws~y~DleEs~gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~  559 (835)
T KOG2047|consen  480 WSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIK  559 (835)
T ss_pred             HHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHH
Confidence                     156667777889999999888888999999999999999999999999988865321  121110      


Q ss_pred             hhhcCccHHHHHhhhhcccCCChhhhh
Q 019586          119 NAIKTRDDFADENIDSNVDVNPIVLSK  145 (338)
Q Consensus       119 ~~~~~~~~~A~e~~~~al~~~P~~~~K  145 (338)
                      .......+-+.+.+..++..-|....|
T Consensus       560 rygg~klEraRdLFEqaL~~Cpp~~aK  586 (835)
T KOG2047|consen  560 RYGGTKLERARDLFEQALDGCPPEHAK  586 (835)
T ss_pred             HhcCCCHHHHHHHHHHHHhcCCHHHHH
Confidence            112222233566777777767754433

>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]

Probab=91.78  E-value=0.35  Score=44.94  Aligned_cols=46  Identities=13%  Similarity=-0.031  Sum_probs=40.9

Q ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccC
Q 019586           63 HLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQ  108 (338)
Q Consensus        63 Ai~~yekAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~  108 (338)
                      |+.+|.+|+.+.|+.+..|+.||.++...|+.-+|+-+|-+++-..
T Consensus         1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~   46 (278)
T PF10373_consen    1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVR   46 (278)
T ss_dssp             HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSS
T ss_pred             CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcC
Confidence            6889999999999999999999999999999999999998888553

This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.

>PRK10941 hypothetical protein; Provisional

Probab=91.71  E-value=0.97  Score=43.41  Aligned_cols=62  Identities=13%  Similarity=0.043  Sum_probs=50.6

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcCCHHHHHHHHHhhCcCCcCCCCCHHHHHHHHHHHHHhCCCCHH
Q 019586            1 MQQNNYIEAEDAYRRALSIAPDNNKMC-NLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDLES   79 (338)
Q Consensus         1 mq~g~~eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k~~p~~~d~lg~~deAi~~yekAL~l~Pd~~~   79 (338)
                      ++.++++.|+.+.+..+.++|+++.-+ -+|.+|..+|.+                     ..|...|+.-++..|+.+.
T Consensus       192 ~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~---------------------~~A~~DL~~fl~~~P~dp~  250 (269)
T PRK10941        192 MEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCE---------------------HVALSDLSYFVEQCPEDPI  250 (269)
T ss_pred             HHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCc---------------------HHHHHHHHHHHHhCCCchh
Confidence            357899999999999999999999866 899999999999                     5555566667777777776


Q ss_pred             HHHH
Q 019586           80 EMMN   83 (338)
Q Consensus        80 a~~n   83 (338)
                      +..-
T Consensus       251 a~~i  254 (269)
T PRK10941        251 SEMI  254 (269)
T ss_pred             HHHH
Confidence            6543

>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]

Probab=91.44  E-value=1.8  Score=49.75  Aligned_cols=85  Identities=7%  Similarity=-0.045  Sum_probs=58.2

Q ss_pred             CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCcc--cc---cchhhhcCccHHHHHh
Q 019586           57 PRGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDH--IL---PTTNAIKTRDDFADEN  131 (338)
Q Consensus        57 lg~~deAi~~yekAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~--~l---~~l~~~~~~~~~A~e~  131 (338)
                      -..+++|.++|++.++--.+....|..+|..++.+.+-++|...+.+||+.-|...+  ..   +.+-.+.|..+-+...
T Consensus      1543 ~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GDaeRGRtl 1622 (1710)
T KOG1070|consen 1543 SEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGDAERGRTL 1622 (1710)
T ss_pred             hhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCCchhhHHH
Confidence            347788888888888876777888888898888888888888888999988888433  11   1122344444444555


Q ss_pred             hhhcccCCCh
Q 019586          132 IDSNVDVNPI  141 (338)
Q Consensus       132 ~~~al~~~P~  141 (338)
                      +.+-+.-.|.
T Consensus      1623 fEgll~ayPK 1632 (1710)
T KOG1070|consen 1623 FEGLLSAYPK 1632 (1710)
T ss_pred             HHHHHhhCcc
Confidence            5554444443

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=91.37  E-value=1.1  Score=46.59  Aligned_cols=102  Identities=16%  Similarity=0.117  Sum_probs=51.3

Q ss_pred             CCCHHHHHHHHHHHHHhCCCCHH--HH-HHHHHHHHcCCHHHHHHHHHhhCcCCcCCCCCHHHHHHHHHHHHHhCC---C
Q 019586            3 QNNYIEAEDAYRRALSIAPDNNK--MC-NLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLK---D   76 (338)
Q Consensus         3 ~g~~eeAi~~y~kALeldPd~a~--a~-nLG~~y~~~G~~dEAi~~~~k~~p~~~d~lg~~deAi~~yekAL~l~P---d   76 (338)
                      +|+.+|||+.|+..++..|....  .+ ||-.+|..+++|.++...+.+.....-     ...|.-+|.+|+-.-.   |
T Consensus       272 lGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~l-----pkSAti~YTaALLkaRav~d  346 (539)
T PF04184_consen  272 LGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISL-----PKSATICYTAALLKARAVGD  346 (539)
T ss_pred             hCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccC-----CchHHHHHHHHHHHHHhhcc
Confidence            46666666666666665553222  22 666666666666666666655321110     1234444444442110   0


Q ss_pred             --CHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCcc
Q 019586           77 --LESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDH  113 (338)
Q Consensus        77 --~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~  113 (338)
                        .+++-...|..-.    -..|.+...+|++.||..+.
T Consensus       347 ~fs~e~a~rRGls~a----e~~aveAi~RAvefNPHVp~  381 (539)
T PF04184_consen  347 KFSPEAASRRGLSPA----EMNAVEAIHRAVEFNPHVPK  381 (539)
T ss_pred             ccCchhhhhcCCChh----HHHHHHHHHHHHHhCCCCch
Confidence              0111122221111    12377888999999998876

The molecular function of this protein is uncertain.

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=91.09  E-value=0.45  Score=48.97  Aligned_cols=53  Identities=25%  Similarity=0.262  Sum_probs=43.1

Q ss_pred             CCCHHHHHHHHHHHHHhCCCCHH-----HHHHHHHHHHcCCHHHHHHHHHhhCcCCcC
Q 019586            3 QNNYIEAEDAYRRALSIAPDNNK-----MCNLGICLMKQGRIGEAKETLRRVKPAVAD   55 (338)
Q Consensus         3 ~g~~eeAi~~y~kALeldPd~a~-----a~nLG~~y~~~G~~dEAi~~~~k~~p~~~d   55 (338)
                      .|+.++|++.|++++........     .|.+|++++.+++|++|..+|.++.....+
T Consensus       280 ~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~W  337 (468)
T PF10300_consen  280 KGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKW  337 (468)
T ss_pred             hcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcccc
Confidence            68999999999999964433222     339999999999999999999997665555

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]

Probab=91.05  E-value=3.6  Score=38.66  Aligned_cols=102  Identities=17%  Similarity=0.104  Sum_probs=67.8

Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHH----cCCHHHHHHHHHh-hCcCCcCC------------CC-------
Q 019586            4 NNYIEAEDAYRRALSIAPDNNKMC-NLGICLMK----QGRIGEAKETLRR-VKPAVADG------------PR-------   58 (338)
Q Consensus         4 g~~eeAi~~y~kALeldPd~a~a~-nLG~~y~~----~G~~dEAi~~~~k-~~p~~~d~------------lg-------   58 (338)
                      .++.+|..+|+++.+  ..++.++ +||.+|..    ..++.+|..+|++ +...++..            .|       
T Consensus        91 ~~~~~A~~~~~~~a~--~g~~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~  168 (292)
T COG0790          91 RDKTKAADWYRCAAA--DGLAEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVA  168 (292)
T ss_pred             ccHHHHHHHHHHHhh--cccHHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhccc
Confidence            456778888885433  3444533 88888776    4478888888888 22222211            11       


Q ss_pred             -CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----CCCHHHHHHHHHHHHccCC
Q 019586           59 -GVDSHLKAYERAQQMLKDLESEMMNKGGDRVE----QSRLFDAFLGSSSIWQPQP  109 (338)
Q Consensus        59 -~~deAi~~yekAL~l~Pd~~~a~~nLG~~l~~----lGr~~eAi~~yekALkl~P  109 (338)
                       +...|+.+|.+|-...  ++.+.+++|.+|..    ..++.+|+.+|.++-+...
T Consensus       169 ~~~~~A~~~~~~aa~~~--~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~  222 (292)
T COG0790         169 YDDKKALYLYRKAAELG--NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD  222 (292)
T ss_pred             HHHHhHHHHHHHHHHhc--CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC
Confidence             3447888888887766  78888888877754    3477888888888877655

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=90.96  E-value=1.4  Score=42.16  Aligned_cols=88  Identities=15%  Similarity=0.049  Sum_probs=64.5

Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcCCHHHHHHHHHhhCcCCcCCCCCHHHHHHHHHHHHHhCCCC---HH
Q 019586            4 NNYIEAEDAYRRALSIAPDNNKMC-NLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDL---ES   79 (338)
Q Consensus         4 g~~eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k~~p~~~d~lg~~deAi~~yekAL~l~Pd~---~~   79 (338)
                      ++.+-|...|+.+++..|.+..+| .+...+...|+.+.|...|++                     ++...|..   ..
T Consensus        50 ~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~~~d~~~aR~lfer---------------------~i~~l~~~~~~~~  108 (280)
T PF05843_consen   50 KDPKRARKIFERGLKKFPSDPDFWLEYLDFLIKLNDINNARALFER---------------------AISSLPKEKQSKK  108 (280)
T ss_dssp             S-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-HHHHHHHHHH---------------------HCCTSSCHHHCHH
T ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhCcHHHHHHHHHH---------------------HHHhcCchhHHHH
Confidence            455669999999999999999977 888899999999666666655                     44444332   25


Q ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCc
Q 019586           80 EMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKD  112 (338)
Q Consensus        80 a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~  112 (338)
                      .|......-...|+++.....++++.++-|...
T Consensus       109 iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~  141 (280)
T PF05843_consen  109 IWKKFIEFESKYGDLESVRKVEKRAEELFPEDN  141 (280)
T ss_dssp             HHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhh
Confidence            666667777788899999999999988888744

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>smart00028 TPR Tetratricopeptide repeats

Probab=90.88  E-value=0.48  Score=27.31  Aligned_cols=22  Identities=36%  Similarity=0.462  Sum_probs=17.3

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHh
Q 019586           27 CNLGICLMKQGRIGEAKETLRR   48 (338)
Q Consensus        27 ~nLG~~y~~~G~~dEAi~~~~k   48 (338)
                      +++|.+|..+|++++|+..|++
T Consensus         5 ~~~a~~~~~~~~~~~a~~~~~~   26 (34)
T smart00028        5 YNLGNAYLKLGDYDEALEYYEK   26 (34)
T ss_pred             HHHHHHHHHHhhHHHHHHHHHH
Confidence            3899999999999666666655

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=90.74  E-value=0.33  Score=31.60  Aligned_cols=21  Identities=43%  Similarity=0.436  Sum_probs=18.4

Q ss_pred             HHHHHHHHcCCHHHHHHHHHh
Q 019586           28 NLGICLMKQGRIGEAKETLRR   48 (338)
Q Consensus        28 nLG~~y~~~G~~dEAi~~~~k   48 (338)
                      +||.+|..+|++++|+.++++
T Consensus         7 ~la~~~~~~g~~~~A~~~~~~   27 (42)
T PF13374_consen    7 NLANAYRAQGRYEEALELLEE   27 (42)
T ss_dssp             HHHHHHHHCT-HHHHHHHHHH
T ss_pred             HHHHHHHhhhhcchhhHHHHH
Confidence            999999999999999998865

>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]

Probab=90.59  E-value=0.96  Score=41.97  Aligned_cols=61  Identities=23%  Similarity=0.150  Sum_probs=43.9

Q ss_pred             HHHHHHHHHHhCCCCHHHH-HHHHHHHHcCCHHHHHHHHHhhCcCCcCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 019586            9 AEDAYRRALSIAPDNNKMC-NLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDLESEMMNKGGD   87 (338)
Q Consensus         9 Ai~~y~kALeldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k~~p~~~d~lg~~deAi~~yekAL~l~Pd~~~a~~nLG~~   87 (338)
                      |+.+|.+|+.+.|+++..| .||.++...|+.=+|+-+|-|                     ++-..--++.+..||...
T Consensus         1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~R---------------------sl~~~~Pf~~A~~NL~~l   59 (278)
T PF10373_consen    1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIR---------------------SLAVRIPFPSARENLQKL   59 (278)
T ss_dssp             HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHH---------------------HHSSSB--HHHHHHHHHH
T ss_pred             CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHH---------------------HHhcCCCcHHHHHHHHHH
Confidence            7899999999999999988 999999999999776666655                     444443345666666665


Q ss_pred             HHH
Q 019586           88 RVE   90 (338)
Q Consensus        88 l~~   90 (338)
                      +.+
T Consensus        60 f~~   62 (278)
T PF10373_consen   60 FEK   62 (278)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            555

This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=90.56  E-value=0.88  Score=45.80  Aligned_cols=85  Identities=12%  Similarity=0.023  Sum_probs=66.5

Q ss_pred             HHHHHHHHcCCHHHHHHHHHhhC---cC--CcC--------------CCCCHHHHHHHHHHHHHhCCC-----CH-----
Q 019586           28 NLGICLMKQGRIGEAKETLRRVK---PA--VAD--------------GPRGVDSHLKAYERAQQMLKD-----LE-----   78 (338)
Q Consensus        28 nLG~~y~~~G~~dEAi~~~~k~~---p~--~~d--------------~lg~~deAi~~yekAL~l~Pd-----~~-----   78 (338)
                      .+|.++..++.|+++++.|+++.   ..  ++.              .+.++++|+....+|.++--.     +.     
T Consensus       127 ~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~  206 (518)
T KOG1941|consen  127 SMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRA  206 (518)
T ss_pred             hHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHH
Confidence            88999999999999999999932   12  221              156999999999999887533     22     


Q ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCc
Q 019586           79 SEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKD  112 (338)
Q Consensus        79 ~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~  112 (338)
                      -+++.++.+|..+|++-+|.++.+++.++.-...
T Consensus       207 ~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~G  240 (518)
T KOG1941|consen  207 MSLYHMAVALRLLGRLGDAMECCEEAMKLALQHG  240 (518)
T ss_pred             HHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhC
Confidence            4568899999999999999999999888755443

>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases

Probab=90.53  E-value=2.4  Score=40.41  Aligned_cols=46  Identities=26%  Similarity=0.353  Sum_probs=25.2

Q ss_pred             CCCHHHHHHHHHHHHHhCCCC----HH-HHHHHHHHHHcCCHHHHHHHHHh
Q 019586            3 QNNYIEAEDAYRRALSIAPDN----NK-MCNLGICLMKQGRIGEAKETLRR   48 (338)
Q Consensus         3 ~g~~eeAi~~y~kALeldPd~----a~-a~nLG~~y~~~G~~dEAi~~~~k   48 (338)
                      .|.++-|..++.++...++..    +. .+..+..+...|+..+|+..++.
T Consensus       159 ~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~  209 (352)
T PF02259_consen  159 AGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRE  209 (352)
T ss_pred             CCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHH
Confidence            456666666666666554211    11 22556666666666666666554

Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=90.39  E-value=1.4  Score=48.52  Aligned_cols=99  Identities=13%  Similarity=0.032  Sum_probs=74.4

Q ss_pred             CCCHHHHHHHHHHH----------HHhCCCCHHHH-----------HHHHHHHHcCCHHHHHHHHHhhCcCCcC-----C
Q 019586            3 QNNYIEAEDAYRRA----------LSIAPDNNKMC-----------NLGICLMKQGRIGEAKETLRRVKPAVAD-----G   56 (338)
Q Consensus         3 ~g~~eeAi~~y~kA----------LeldPd~a~a~-----------nLG~~y~~~G~~dEAi~~~~k~~p~~~d-----~   56 (338)
                      .++.+.|+++|+++          |.-+|...+.|           =-|..+-..|+++.|+.+|..+...+..     .
T Consensus       871 r~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D~fs~VrI~C~  950 (1416)
T KOG3617|consen  871 RRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKDYFSMVRIKCI  950 (1416)
T ss_pred             hccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhhhhhheeeEee
Confidence            35678888888864          33345433333           3466778899999999999997766655     3


Q ss_pred             CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHc
Q 019586           57 PRGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQ  106 (338)
Q Consensus        57 lg~~deAi~~yekAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALk  106 (338)
                      +|+.++|....++     ..+-.+-|.||..|...|++.+|+..|-+|-.
T Consensus       951 qGk~~kAa~iA~e-----sgd~AAcYhlaR~YEn~g~v~~Av~FfTrAqa  995 (1416)
T KOG3617|consen  951 QGKTDKAARIAEE-----SGDKAACYHLARMYENDGDVVKAVKFFTRAQA  995 (1416)
T ss_pred             ccCchHHHHHHHh-----cccHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence            8999999876665     44567778899999999999999988876543

>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]

Probab=90.10  E-value=2.3  Score=37.19  Aligned_cols=76  Identities=8%  Similarity=0.079  Sum_probs=59.7

Q ss_pred             CCCCHHHHHHHHHHHHcCCHHHHHHHHHhhCcCCcCCCCCHHHHHHHHHHHHH-hCCCC-HHHHHHHHHHHHHCCCHHHH
Q 019586           20 APDNNKMCNLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQ-MLKDL-ESEMMNKGGDRVEQSRLFDA   97 (338)
Q Consensus        20 dPd~a~a~nLG~~y~~~G~~dEAi~~~~k~~p~~~d~lg~~deAi~~yekAL~-l~Pd~-~~a~~nLG~~l~~lGr~~eA   97 (338)
                      ++.-...+|+++++....+.++                  ..+.+.+++..++ -.|+. -+..|.|+..+++.|+|+.|
T Consensus        29 ~~s~~s~f~lAwaLV~S~~~~d------------------v~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s   90 (149)
T KOG3364|consen   29 DVSKQSQFNLAWALVRSRDTED------------------VQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKS   90 (149)
T ss_pred             cchHHHHHHHHHHHHcccchHH------------------HHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHH
Confidence            3333335599999988777643                  3678888888886 44443 36778899999999999999


Q ss_pred             HHHHHHHHccCCCCcc
Q 019586           98 FLGSSSIWQPQPCKDH  113 (338)
Q Consensus        98 i~~yekALkl~P~~~~  113 (338)
                      +.+....++.+|++.+
T Consensus        91 ~~yvd~ll~~e~~n~Q  106 (149)
T KOG3364|consen   91 LRYVDALLETEPNNRQ  106 (149)
T ss_pred             HHHHHHHHhhCCCcHH
Confidence            9999999999999987

>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=89.99  E-value=1.2  Score=44.28  Aligned_cols=54  Identities=9%  Similarity=0.059  Sum_probs=45.5

Q ss_pred             HHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCcc
Q 019586           60 VDSHLKAYERAQQMLKDL----ESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDH  113 (338)
Q Consensus        60 ~deAi~~yekAL~l~Pd~----~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~  113 (338)
                      |..|+.+|.+.|...-.+    +..|.|.+.+.+.+|+|..|+....++++++|.+..
T Consensus        97 yk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~K  154 (390)
T KOG0551|consen   97 YKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLK  154 (390)
T ss_pred             HHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhh
Confidence            366777778888876433    356899999999999999999999999999999876

>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models

Probab=89.67  E-value=0.42  Score=29.16  Aligned_cols=24  Identities=8%  Similarity=-0.197  Sum_probs=21.8

Q ss_pred             HHHHHHHHHHHHCCCHHHHHHHHH
Q 019586           79 SEMMNKGGDRVEQSRLFDAFLGSS  102 (338)
Q Consensus        79 ~a~~nLG~~l~~lGr~~eAi~~ye  102 (338)
                      .+++++|.++..+|++++|...++
T Consensus         2 ~a~~~la~~~~~~G~~~eA~~~l~   25 (26)
T PF07721_consen    2 RARLALARALLAQGDPDEAERLLR   25 (26)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHh
Confidence            567899999999999999999876

The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding

>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]

Probab=89.34  E-value=2.9  Score=43.61  Aligned_cols=83  Identities=12%  Similarity=-0.081  Sum_probs=56.2

Q ss_pred             HHHHHHHHHhCCCCHHHH-HHHHHHHHcCCHHHHHHHHHhhCcCCcCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 019586           10 EDAYRRALSIAPDNNKMC-NLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDLESEMMNKGGDR   88 (338)
Q Consensus        10 i~~y~kALeldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k~~p~~~d~lg~~deAi~~yekAL~l~Pd~~~a~~nLG~~l   88 (338)
                      ...|++|+...+.+...| ++...-.+.+.+                     .+--..|.+++..+|++++.|..-+...
T Consensus        91 v~lyr~at~rf~~D~~lW~~yi~f~kk~~~~---------------------~~v~ki~~~~l~~Hp~~~dLWI~aA~we  149 (568)
T KOG2396|consen   91 VFLYRRATNRFNGDVKLWLSYIAFCKKKKTY---------------------GEVKKIFAAMLAKHPNNPDLWIYAAKWE  149 (568)
T ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHhcch---------------------hHHHHHHHHHHHhCCCCchhHHhhhhhH
Confidence            467888888888777766 443333333335                     3445566667777788777777777776


Q ss_pred             HHCCC-HHHHHHHHHHHHccCCCCcc
Q 019586           89 VEQSR-LFDAFLGSSSIWQPQPCKDH  113 (338)
Q Consensus        89 ~~lGr-~~eAi~~yekALkl~P~~~~  113 (338)
                      ++.+. .+.|.+.|.++|+.+|+++.
T Consensus       150 fe~n~ni~saRalflrgLR~npdsp~  175 (568)
T KOG2396|consen  150 FEINLNIESARALFLRGLRFNPDSPK  175 (568)
T ss_pred             HhhccchHHHHHHHHHHhhcCCCChH
Confidence            66666 67777777788888777776

>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]

Probab=89.33  E-value=2.7  Score=48.47  Aligned_cols=134  Identities=10%  Similarity=0.028  Sum_probs=90.6

Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHcCCHHHHHHHHHhhCcCCcC-------------CCCCHHHHHHHHHHHHH
Q 019586            6 YIEAEDAYRRALSIAPDNNKMCNLGICLMKQGRIGEAKETLRRVKPAVAD-------------GPRGVDSHLKAYERAQQ   72 (338)
Q Consensus         6 ~eeAi~~y~kALeldPd~a~a~nLG~~y~~~G~~dEAi~~~~k~~p~~~d-------------~lg~~deAi~~yekAL~   72 (338)
                      -+.-.+.|++|.++..-.-.+..|.-+|.+.+++++|.++|++....+..             .+.+-++|...+.+|++
T Consensus      1513 eesl~kVFeRAcqycd~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~ 1592 (1710)
T KOG1070|consen 1513 EESLKKVFERACQYCDAYTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALK 1592 (1710)
T ss_pred             HHHHHHHHHHHHHhcchHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence            34556778888876533333338888888889999999988885544442             14455677788888888


Q ss_pred             hCCC--CHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCccccc---chhhhcCccHHHHHhhhhcccCC
Q 019586           73 MLKD--LESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDHILP---TTNAIKTRDDFADENIDSNVDVN  139 (338)
Q Consensus        73 l~Pd--~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~~l~---~l~~~~~~~~~A~e~~~~al~~~  139 (338)
                      ..|.  +.+.....+..-++.|+-+.+...|+-.+.-.|.-..++.   ..-.+.+.....+..+...+.+.
T Consensus      1593 ~lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~ 1664 (1710)
T KOG1070|consen 1593 SLPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELK 1664 (1710)
T ss_pred             hcchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcC
Confidence            8887  6677777788888888888888888888888887555221   11223344455555665555433

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=89.02  E-value=2.7  Score=42.31  Aligned_cols=100  Identities=17%  Similarity=0.085  Sum_probs=65.2

Q ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHcCCHHHHHHHHHhhCcCCcCCCCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 019586            5 NYIEAEDAYRRALSIAPDNNKMCNLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDLESEMMNK   84 (338)
Q Consensus         5 ~~eeAi~~y~kALeldPd~a~a~nLG~~y~~~G~~dEAi~~~~k~~p~~~d~lg~~deAi~~yekAL~l~Pd~~~a~~nL   84 (338)
                      ..++|+.+|+++.+++|+....-|++.++...|.-.+.....+++.-         .-+...-++-..-.-.+-..+-.+
T Consensus       241 ~ldkAi~~Y~kgFe~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~---------~l~~llg~kg~~~~~~dYWd~ATl  311 (374)
T PF13281_consen  241 SLDKAIEWYRKGFEIEPDYYSGINAATLLMLAGHDFETSEELRKIGV---------KLSSLLGRKGSLEKMQDYWDVATL  311 (374)
T ss_pred             HHHHHHHHHHHHHcCCccccchHHHHHHHHHcCCcccchHHHHHHHH---------HHHHHHHhhccccccccHHHHHHH
Confidence            36899999999999998665555999999999986555444444110         000000011111111222334557


Q ss_pred             HHHHHHCCCHHHHHHHHHHHHccCCCCcc
Q 019586           85 GGDRVEQSRLFDAFLGSSSIWQPQPCKDH  113 (338)
Q Consensus        85 G~~l~~lGr~~eAi~~yekALkl~P~~~~  113 (338)
                      ..+..-.|++++|+.++++++++.|..-.
T Consensus       312 ~Ea~vL~~d~~ka~~a~e~~~~l~~~~W~  340 (374)
T PF13281_consen  312 LEASVLAGDYEKAIQAAEKAFKLKPPAWE  340 (374)
T ss_pred             HHHHHHcCCHHHHHHHHHHHhhcCCcchh
Confidence            78888999999999999999999876544

>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function

Probab=88.90  E-value=2.7  Score=35.30  Aligned_cols=95  Identities=13%  Similarity=0.063  Sum_probs=69.9

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCCHHHH----HHHHHHHHcCCHHHHHHHHHhhCcCCcCC-CCCHHHHHHHHHHHHHhCCC
Q 019586            2 QQNNYIEAEDAYRRALSIAPDNNKMC----NLGICLMKQGRIGEAKETLRRVKPAVADG-PRGVDSHLKAYERAQQMLKD   76 (338)
Q Consensus         2 q~g~~eeAi~~y~kALeldPd~a~a~----nLG~~y~~~G~~dEAi~~~~k~~p~~~d~-lg~~deAi~~yekAL~l~Pd   76 (338)
                      +.|++-+|++..+..+...++....|    .-|.++..+..-           -.+++. ..-.-.++.+|.++..+.|+
T Consensus         8 ~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~-----------ten~d~k~~yLl~sve~~s~a~~Lsp~   76 (111)
T PF04781_consen    8 ARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKK-----------TENPDVKFRYLLGSVECFSRAVELSPD   76 (111)
T ss_pred             HccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHh-----------ccCchHHHHHHHHhHHHHHHHhccChh
Confidence            57999999999999999988777532    556665444322           112221 11235689999999999999


Q ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHcc
Q 019586           77 LESEMMNKGGDRVEQSRLFDAFLGSSSIWQP  107 (338)
Q Consensus        77 ~~~a~~nLG~~l~~lGr~~eAi~~yekALkl  107 (338)
                      .+..++.||.-+--...|+++..-.+++|.+
T Consensus        77 ~A~~L~~la~~l~s~~~Ykk~v~kak~~Lsv  107 (111)
T PF04781_consen   77 SAHSLFELASQLGSVKYYKKAVKKAKRGLSV  107 (111)
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHHHHhcc
Confidence            9999999998877777788888887777765

>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones []

Probab=88.71  E-value=1  Score=30.03  Aligned_cols=34  Identities=3%  Similarity=-0.101  Sum_probs=26.5

Q ss_pred             HHHHHHHHHHHHHCCCHHHHHHH--HHHHHccCCCC
Q 019586           78 ESEMMNKGGDRVEQSRLFDAFLG--SSSIWQPQPCK  111 (338)
Q Consensus        78 ~~a~~nLG~~l~~lGr~~eAi~~--yekALkl~P~~  111 (338)
                      ++.++.+|..+..+|++++|+..  |.-+..+++.|
T Consensus         1 ~e~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~n   36 (36)
T PF07720_consen    1 PEYLYGLAYNFYQKGKYDEAIHFFQYAFLCALDKYN   36 (36)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT-
T ss_pred             CcHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcccC
Confidence            35788999999999999999999  44777777653

; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.

>KOG2471 consensus TPR repeat-containing protein [General function prediction only]

Probab=88.59  E-value=2.2  Score=44.42  Aligned_cols=99  Identities=12%  Similarity=-0.002  Sum_probs=73.4

Q ss_pred             HHhCCCCHHHH-HHHHHHHHcCCHHHHHHHHHhhC----cC---CcC---------------CCCCHHHHHHHHHHHHH-
Q 019586           17 LSIAPDNNKMC-NLGICLMKQGRIGEAKETLRRVK----PA---VAD---------------GPRGVDSHLKAYERAQQ-   72 (338)
Q Consensus        17 LeldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k~~----p~---~~d---------------~lg~~deAi~~yekAL~-   72 (338)
                      +.+..+.+.+. -.+..++..|++..|.+.+...+    +.   .+.               .++.|.-++.+|.+|++ 
T Consensus       233 mn~a~~s~~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N  312 (696)
T KOG2471|consen  233 MNIAQDSSMALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRN  312 (696)
T ss_pred             hhhcCCCcHHHHHHHHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHH
Confidence            33334455533 77888889999999999887721    11   111               36789999999999996 


Q ss_pred             --------hCCC---------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCcccc
Q 019586           73 --------MLKD---------LESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDHIL  115 (338)
Q Consensus        73 --------l~Pd---------~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~~l  115 (338)
                              +.|.         .-+.+||.|..|+..||.-.|++||.++++.--.++.++
T Consensus       313 ~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~nPrlW  372 (696)
T KOG2471|consen  313 SCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRNPRLW  372 (696)
T ss_pred             HHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcCcHHH
Confidence                    1222         237789999999999999999999999998877777644

>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=88.53  E-value=0.53  Score=31.92  Aligned_cols=30  Identities=13%  Similarity=-0.029  Sum_probs=27.6

Q ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHccC
Q 019586           79 SEMMNKGGDRVEQSRLFDAFLGSSSIWQPQ  108 (338)
Q Consensus        79 ~a~~nLG~~l~~lGr~~eAi~~yekALkl~  108 (338)
                      ++|..||.+.+..++|++|+..|+++|++.
T Consensus         2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i~   31 (38)
T PF10516_consen    2 DVYDLLGEISLENENFEQAIEDYEKALEIQ   31 (38)
T ss_pred             cHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence            578899999999999999999999999874

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].

>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]

Probab=87.95  E-value=9.5  Score=35.77  Aligned_cols=102  Identities=16%  Similarity=0.128  Sum_probs=71.3

Q ss_pred             CCHHHHHHHHHHHHHhCCCCH-H-HHHHHHHHHHcC-------CHHHHHHHHHhhCc-CCcC--------------CCCC
Q 019586            4 NNYIEAEDAYRRALSIAPDNN-K-MCNLGICLMKQG-------RIGEAKETLRRVKP-AVAD--------------GPRG   59 (338)
Q Consensus         4 g~~eeAi~~y~kALeldPd~a-~-a~nLG~~y~~~G-------~~dEAi~~~~k~~p-~~~d--------------~lg~   59 (338)
                      .++.+|..+|++|....-..+ . .+++|.+|..-.       +...|+..|.++.. .+++              ...+
T Consensus       127 ~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~~~~a~~~lg~~y~~G~Gv~~d  206 (292)
T COG0790         127 LDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELGNPDAQLLLGRMYEKGLGVPRD  206 (292)
T ss_pred             cCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhcCHHHHHHHHHHHHcCCCCCcC
Confidence            478999999999999854432 2 348888876642       23378888888222 2222              1349


Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC---------------CHHHHHHHHHHHHccC
Q 019586           60 VDSHLKAYERAQQMLKDLESEMMNKGGDRVEQS---------------RLFDAFLGSSSIWQPQ  108 (338)
Q Consensus        60 ~deAi~~yekAL~l~Pd~~~a~~nLG~~l~~lG---------------r~~eAi~~yekALkl~  108 (338)
                      +.+|..+|.+|-+...  ..+++++| ++...|               +...|..+|..+-..-
T Consensus       207 ~~~A~~wy~~Aa~~g~--~~a~~~~~-~~~~~g~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~  267 (292)
T COG0790         207 LKKAFRWYKKAAEQGD--GAACYNLG-LMYLNGEGVKKAAFLTAAKEEDKKQALEWLQKACELG  267 (292)
T ss_pred             HHHHHHHHHHHHHCCC--HHHHHHHH-HHHhcCCCchhhhhcccccCCCHHHHHHHHHHHHHcC
Confidence            9999999999999876  89999999 777777               5555666665554443

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=87.58  E-value=5.3  Score=35.63  Aligned_cols=51  Identities=8%  Similarity=-0.044  Sum_probs=29.5

Q ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCc
Q 019586           62 SHLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKD  112 (338)
Q Consensus        62 eAi~~yekAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~  112 (338)
                      ++...+.-.--+.|..++....-|.++...|+|.+|+..++.+..-.|..+
T Consensus        28 D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p   78 (160)
T PF09613_consen   28 DAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFP   78 (160)
T ss_pred             HHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCh
Confidence            333333334445566666666666666666666666666666655555544

>PF12862 Apc5: Anaphase-promoting complex subunit 5

Probab=87.40  E-value=1.7  Score=34.54  Aligned_cols=36  Identities=6%  Similarity=-0.065  Sum_probs=30.6

Q ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCcc
Q 019586           78 ESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDH  113 (338)
Q Consensus        78 ~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~  113 (338)
                      ..++.++|.++...|++++|+..+++++++......
T Consensus        41 ~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are~~D   76 (94)
T PF12862_consen   41 AYALLNLAELHRRFGHYEEALQALEEAIRLARENGD   76 (94)
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHCC
Confidence            466788999999999999999999999987655443

>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]

Probab=87.21  E-value=0.6  Score=49.38  Aligned_cols=103  Identities=13%  Similarity=0.023  Sum_probs=81.0

Q ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHH-cCCHHHHHHHHHhh----CcCCcC-----------CCCCHHHHHHHHHHHHHhC
Q 019586           11 DAYRRALSIAPDNNKMCNLGICLMK-QGRIGEAKETLRRV----KPAVAD-----------GPRGVDSHLKAYERAQQML   74 (338)
Q Consensus        11 ~~y~kALeldPd~a~a~nLG~~y~~-~G~~dEAi~~~~k~----~p~~~d-----------~lg~~deAi~~yekAL~l~   74 (338)
                      .....+++..|.++..++++..|.+ +|+..+|..++..+    .+.+.+           ..|...+|--++..|+.-.
T Consensus       200 ~~~~~glq~~~~sw~lH~~as~YWR~~G~~~~A~~Ca~~a~hf~~~h~kdi~lLSlaTiL~RaG~sadA~iILhAA~~dA  279 (886)
T KOG4507|consen  200 HLIHEGLQKNTSSWVLHNMASFYWRIKGEPYQAVECAMRALHFSSRHNKDIALLSLATVLHRAGFSADAAVILHAALDDA  279 (886)
T ss_pred             HHHHHhhhcCchhHHHHHHHHHHHHHcCChhhhhHHHHHHhhhCCcccccchhhhHHHHHHHcccccchhheeehhccCC
Confidence            4456677788888888888888865 88998998888882    222222           2677788888888888888


Q ss_pred             CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCcc
Q 019586           75 KDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDH  113 (338)
Q Consensus        75 Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~  113 (338)
                      |....-++-+|.++..+|.+.-.+.+|..+.+..|....
T Consensus       280 ~~~t~n~y~l~~i~aml~~~N~S~~~ydha~k~~p~f~q  318 (886)
T KOG4507|consen  280 DFFTSNYYTLGNIYAMLGEYNHSVLCYDHALQARPGFEQ  318 (886)
T ss_pred             ccccccceeHHHHHHHHhhhhhhhhhhhhhhccCcchhH
Confidence            888888999999999999999999999999998887554

>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A

Probab=87.08  E-value=3  Score=30.27  Aligned_cols=40  Identities=15%  Similarity=0.069  Sum_probs=28.3

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHhhCcCCcCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 019586           26 MCNLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDLESEMMNKGG   86 (338)
Q Consensus        26 a~nLG~~y~~~G~~dEAi~~~~k~~p~~~d~lg~~deAi~~yekAL~l~Pd~~~a~~nLG~   86 (338)
                      .|.+|..+.++|+|                     ++|..+.+.+++++|++..+..-...
T Consensus         4 lY~lAig~ykl~~Y---------------------~~A~~~~~~lL~~eP~N~Qa~~L~~~   43 (53)
T PF14853_consen    4 LYYLAIGHYKLGEY---------------------EKARRYCDALLEIEPDNRQAQSLKEL   43 (53)
T ss_dssp             HHHHHHHHHHTT-H---------------------HHHHHHHHHHHHHTTS-HHHHHHHHH
T ss_pred             HHHHHHHHHHhhhH---------------------HHHHHHHHHHHhhCCCcHHHHHHHHH
Confidence            45788888999998                     55666667799999999887654433

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=86.89  E-value=1.2  Score=42.42  Aligned_cols=54  Identities=22%  Similarity=0.279  Sum_probs=44.0

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcCCHHHHHHHHHhhCcCCcC
Q 019586            2 QQNNYIEAEDAYRRALSIAPDNNKMC-NLGICLMKQGRIGEAKETLRRVKPAVAD   55 (338)
Q Consensus         2 q~g~~eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k~~p~~~d   55 (338)
                      ..++.+.|.++|.+|+++-|+...-| .+|....+.|+++.|.+.|++....+|+
T Consensus         7 ~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~   61 (287)
T COG4976           7 ESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPE   61 (287)
T ss_pred             ccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCcc
Confidence            46889999999999999999988855 9999999999997777777774444433

>KOG2610 consensus Uncharacterized conserved protein [Function unknown]

Probab=86.43  E-value=2.1  Score=42.84  Aligned_cols=85  Identities=14%  Similarity=-0.099  Sum_probs=67.1

Q ss_pred             HHHHHHHcCCHHHHHHHHHhhCcCCcC-------------CCCCHHHHHHHHHHHHHh-CCCCH---HHHHHHHHHHHHC
Q 019586           29 LGICLMKQGRIGEAKETLRRVKPAVAD-------------GPRGVDSHLKAYERAQQM-LKDLE---SEMMNKGGDRVEQ   91 (338)
Q Consensus        29 LG~~y~~~G~~dEAi~~~~k~~p~~~d-------------~lg~~deAi~~yekAL~l-~Pd~~---~a~~nLG~~l~~l   91 (338)
                      -+.++...|++-+|....+++..++|.             ..|+.+.-...+++.+-. +|+.|   -.+-.++-.+.+.
T Consensus       109 ~aai~~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~  188 (491)
T KOG2610|consen  109 KAAILWGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEEC  188 (491)
T ss_pred             hHHHhhccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHh
Confidence            344566677888888888887777765             267888888888888877 77774   3445567789999


Q ss_pred             CCHHHHHHHHHHHHccCCCCcc
Q 019586           92 SRLFDAFLGSSSIWQPQPCKDH  113 (338)
Q Consensus        92 Gr~~eAi~~yekALkl~P~~~~  113 (338)
                      |-|++|...-+++++++|.+..
T Consensus       189 g~y~dAEk~A~ralqiN~~D~W  210 (491)
T KOG2610|consen  189 GIYDDAEKQADRALQINRFDCW  210 (491)
T ss_pred             ccchhHHHHHHhhccCCCcchH
Confidence            9999999999999999999876

>PRK13184 pknD serine/threonine-protein kinase; Reviewed

Probab=85.92  E-value=2  Score=48.02  Aligned_cols=95  Identities=16%  Similarity=0.086  Sum_probs=62.2

Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHH----HHHHHHHHcCCHHHHHHHHHhhCcCCcCCCCCHHHHHHHHHHHHHhCCCCHH
Q 019586            4 NNYIEAEDAYRRALSIAPDNNKMC----NLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDLES   79 (338)
Q Consensus         4 g~~eeAi~~y~kALeldPd~a~a~----nLG~~y~~~G~~dEAi~~~~k~~p~~~d~lg~~deAi~~yekAL~l~Pd~~~   79 (338)
                      +.|++|+..|++.-.-.|...+.|    .+|.++..+-.-..           +   ...+++|+..|++.- -.|.-|-
T Consensus       489 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~---~~~~~~~~~~~~~~~-~~~~~~~  553 (932)
T PRK13184        489 KLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQG-----------D---PRDFTQALSEFSYLH-GGVGAPL  553 (932)
T ss_pred             HHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcC-----------C---hHHHHHHHHHHHHhc-CCCCCch
Confidence            346666666666666666655533    55555533211100           0   024566666666642 2355666


Q ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCcc
Q 019586           80 EMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDH  113 (338)
Q Consensus        80 a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~  113 (338)
                      -|...+.+|..+|+|+|-++||.-|++.-|+++.
T Consensus       554 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  587 (932)
T PRK13184        554 EYLGKALVYQRLGEYNEEIKSLLLALKRYSQHPE  587 (932)
T ss_pred             HHHhHHHHHHHhhhHHHHHHHHHHHHHhcCCCCc
Confidence            6778888999999999999999999999999987

>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=85.25  E-value=13  Score=34.11  Aligned_cols=104  Identities=12%  Similarity=-0.036  Sum_probs=68.8

Q ss_pred             CCCHHHHHHHHHHHHHhCCCCHHHH---HHHHHHHHcCCHHHHHHHHHhhCcCCcCC-----------------CCCHHH
Q 019586            3 QNNYIEAEDAYRRALSIAPDNNKMC---NLGICLMKQGRIGEAKETLRRVKPAVADG-----------------PRGVDS   62 (338)
Q Consensus         3 ~g~~eeAi~~y~kALeldPd~a~a~---nLG~~y~~~G~~dEAi~~~~k~~p~~~d~-----------------lg~~de   62 (338)
                      .++.++|...|...-+-+-......   ..|.++...|+..+|+.+|..+..+.+.-                 .|.|+.
T Consensus        71 ~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy~d  150 (221)
T COG4649          71 ENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSYDD  150 (221)
T ss_pred             cCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccHHH
Confidence            4566777777776655443322222   78888999999999999999954443321                 344544


Q ss_pred             HHHHHHHH-HHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHc
Q 019586           63 HLKAYERA-QQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQ  106 (338)
Q Consensus        63 Ai~~yekA-L~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALk  106 (338)
                      -....+.. -.-+|--..+...||.+-++.|++..|..+|.....
T Consensus       151 V~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~  195 (221)
T COG4649         151 VSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN  195 (221)
T ss_pred             HHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence            33333221 112233446677899999999999999999988765

>KOG2300 consensus Uncharacterized conserved protein [Function unknown]

Probab=84.71  E-value=8  Score=40.42  Aligned_cols=111  Identities=12%  Similarity=0.090  Sum_probs=77.0

Q ss_pred             CCCHHHHHHHHHHHHHhCCC-CHHHH---HHHHHHHHcCCHHHHHHHHHhhCcCCcC--------------------CCC
Q 019586            3 QNNYIEAEDAYRRALSIAPD-NNKMC---NLGICLMKQGRIGEAKETLRRVKPAVAD--------------------GPR   58 (338)
Q Consensus         3 ~g~~eeAi~~y~kALeldPd-~a~a~---nLG~~y~~~G~~dEAi~~~~k~~p~~~d--------------------~lg   58 (338)
                      -+.|+.|+..|..|+++-.. +-.++   |++.+|...|+-+.--+..+.+.|.+..                    .++
T Consensus       380 v~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi~YL~~~~~ed~y~~ld~i~p~nt~s~ssq~l~a~~~~v~glfaf~qn  459 (629)
T KOG2300|consen  380 VNCYENAEFHFIEATKLTESIDLQAFCNLNLAISYLRIGDAEDLYKALDLIGPLNTNSLSSQRLEASILYVYGLFAFKQN  459 (629)
T ss_pred             cchHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHHHHhccHHHHHHHHHhcCCCCCCcchHHHHHHHHHHHHHHHHHHhc
Confidence            46789999999999997532 22333   9999999999988888888887776543                    156


Q ss_pred             CHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCcc
Q 019586           59 GVDSHLKAYERAQQMLKD------LESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDH  113 (338)
Q Consensus        59 ~~deAi~~yekAL~l~Pd------~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~  113 (338)
                      ++.||...+.+.+++.-.      .+-.+.-||.+..-.|+..++....+-++++....++
T Consensus       460 ~lnEaK~~l~e~Lkmanaed~~rL~a~~LvLLs~v~lslgn~~es~nmvrpamqlAkKi~D  520 (629)
T KOG2300|consen  460 DLNEAKRFLRETLKMANAEDLNRLTACSLVLLSHVFLSLGNTVESRNMVRPAMQLAKKIPD  520 (629)
T ss_pred             cHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHhcchHHHHhccchHHHHHhcCCC
Confidence            777777777777776511      1122344666777777777777776666666555444

>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=84.56  E-value=5  Score=38.60  Aligned_cols=106  Identities=14%  Similarity=0.173  Sum_probs=68.1

Q ss_pred             HHHHHHHHHHHHHh-CCCCHH---HH-HHHHHHHHcCCHHHHHHHHHhhCcCCcC-------------------CCCCHH
Q 019586            6 YIEAEDAYRRALSI-APDNNK---MC-NLGICLMKQGRIGEAKETLRRVKPAVAD-------------------GPRGVD   61 (338)
Q Consensus         6 ~eeAi~~y~kALel-dPd~a~---a~-nLG~~y~~~G~~dEAi~~~~k~~p~~~d-------------------~lg~~d   61 (338)
                      ..+|.+...+.... .||.-.   .| .-+.+|....+|++|..++.++...+..                   .+..+.
T Consensus         9 i~ea~e~~a~t~~~wkad~dgaas~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~kls   88 (308)
T KOG1585|consen    9 ISEADEMTALTLTRWKADWDGAASLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLS   88 (308)
T ss_pred             HHHHHHHHHHHhhccCCCchhhHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhH
Confidence            45555555555553 344322   44 7888999999999999988884322111                   144677


Q ss_pred             HHHHHHHHHHHhC-----CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCC
Q 019586           62 SHLKAYERAQQML-----KDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCK  111 (338)
Q Consensus        62 eAi~~yekAL~l~-----Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~  111 (338)
                      |+...|++|..+-     |+.+..-...+.-..+.-+.++|+..|++++.+--..
T Consensus        89 Evvdl~eKAs~lY~E~GspdtAAmaleKAak~lenv~Pd~AlqlYqralavve~~  143 (308)
T KOG1585|consen   89 EVVDLYEKASELYVECGSPDTAAMALEKAAKALENVKPDDALQLYQRALAVVEED  143 (308)
T ss_pred             HHHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhcc
Confidence            7777778777662     5544444555555667777888888888877665443

>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]

Probab=84.21  E-value=5.1  Score=42.46  Aligned_cols=109  Identities=18%  Similarity=0.000  Sum_probs=67.3

Q ss_pred             HHHHHHHHHHhCCCCHHHH---HHHHHHHHcCCHHHHHHHHHh---hCcCCcCC-----------CCCHHHHHHHHHHHH
Q 019586            9 AEDAYRRALSIAPDNNKMC---NLGICLMKQGRIGEAKETLRR---VKPAVADG-----------PRGVDSHLKAYERAQ   71 (338)
Q Consensus         9 Ai~~y~kALeldPd~a~a~---nLG~~y~~~G~~dEAi~~~~k---~~p~~~d~-----------lg~~deAi~~yekAL   71 (338)
                      |+..+..-+.+++.+...+   .++..+...+....+...++.   ++|.++..           ...+.-++.+.+.|.
T Consensus        50 ~~~a~~~~~~~~~~~~~llla~~lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~~~~~a~  129 (620)
T COG3914          50 AIYALLLGIAINDVNPELLLAAFLSILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALADISEIAE  129 (620)
T ss_pred             HHHHHHccCccCCCCHHHHHHHHHHhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence            4444455555555555543   244444555555444444444   22222221           223444555556688


Q ss_pred             HhCCCCHHHHHHH------HHHHHHCCCHHHHHHHHHHHHccCCCCcccccc
Q 019586           72 QMLKDLESEMMNK------GGDRVEQSRLFDAFLGSSSIWQPQPCKDHILPT  117 (338)
Q Consensus        72 ~l~Pd~~~a~~nL------G~~l~~lGr~~eAi~~yekALkl~P~~~~~l~~  117 (338)
                      ...|++......+      |..+..+|+..++....++++.+.|.++++...
T Consensus       130 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~d~~p~~~~~~~~  181 (620)
T COG3914         130 WLSPDNAEFLGHLIRFYQLGRYLKLLGRTAEAELALERAVDLLPKYPRVLGA  181 (620)
T ss_pred             hcCcchHHHHhhHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhhhhhhHhH
Confidence            8888888776555      888889999999999999999999998775443

>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=84.03  E-value=14  Score=38.95  Aligned_cols=104  Identities=12%  Similarity=-0.022  Sum_probs=77.8

Q ss_pred             CCCHHHHHHHHHHHHH-------hCCCCHHHHHHHHHHHHcC-----CHHHHHHHHHh-hCcCCcCC-----------C-
Q 019586            3 QNNYIEAEDAYRRALS-------IAPDNNKMCNLGICLMKQG-----RIGEAKETLRR-VKPAVADG-----------P-   57 (338)
Q Consensus         3 ~g~~eeAi~~y~kALe-------ldPd~a~a~nLG~~y~~~G-----~~dEAi~~~~k-~~p~~~d~-----------l-   57 (338)
                      ..+.+.|+.+|+.|.+       .. .....+.+|.+|....     +++.|+.+|.+ +.-.++++           . 
T Consensus       262 ~~d~e~a~~~l~~aa~~~~~~a~~~-~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g~~~a~~~lg~~~~~g~~  340 (552)
T KOG1550|consen  262 TQDLESAIEYLKLAAESFKKAATKG-LPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELGNPDAQYLLGVLYETGTK  340 (552)
T ss_pred             cccHHHHHHHHHHHHHHHHHHHhhc-CCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhcCCchHHHHHHHHHHcCCc
Confidence            4578999999999987       22 1222458999998854     67889999999 33344442           2 


Q ss_pred             -CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----CCCHHHHHHHHHHHHccCC
Q 019586           58 -RGVDSHLKAYERAQQMLKDLESEMMNKGGDRVE----QSRLFDAFLGSSSIWQPQP  109 (338)
Q Consensus        58 -g~~deAi~~yekAL~l~Pd~~~a~~nLG~~l~~----lGr~~eAi~~yekALkl~P  109 (338)
                       .++..|..+|..|.+  -.+..+.+++|.+|..    .-+...|+.+|.++.+..+
T Consensus       341 ~~d~~~A~~yy~~Aa~--~G~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g~  395 (552)
T KOG1550|consen  341 ERDYRRAFEYYSLAAK--AGHILAIYRLALCYELGLGVERNLELAFAYYKKAAEKGN  395 (552)
T ss_pred             cccHHHHHHHHHHHHH--cCChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHccC
Confidence             457899999999977  4478889999988764    3578999999999988773

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=83.83  E-value=20  Score=34.07  Aligned_cols=47  Identities=30%  Similarity=0.427  Sum_probs=38.6

Q ss_pred             CCCCHHHHHHHHHHHHHhC----CCCHH-----HHHHHHHHHHcC-CHHHHHHHHHh
Q 019586            2 QQNNYIEAEDAYRRALSIA----PDNNK-----MCNLGICLMKQG-RIGEAKETLRR   48 (338)
Q Consensus         2 q~g~~eeAi~~y~kALeld----Pd~a~-----a~nLG~~y~~~G-~~dEAi~~~~k   48 (338)
                      .+|+++.|..+|.|+=.+.    |+...     .||.|..+...+ ++++|+.++++
T Consensus         5 ~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~   61 (278)
T PF08631_consen    5 KQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQR   61 (278)
T ss_pred             hhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHH
Confidence            5799999999999987654    44444     339999999999 99999999877

It is also involved in sporulation [].

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=82.68  E-value=6  Score=35.41  Aligned_cols=78  Identities=15%  Similarity=0.039  Sum_probs=60.2

Q ss_pred             HHHHHHHHcCCHHHHHHHHHhhCcCCcC----------------CCCCHHHHHHHHHHHHHhCCC--CHHH----HHHHH
Q 019586           28 NLGICLMKQGRIGEAKETLRRVKPAVAD----------------GPRGVDSHLKAYERAQQMLKD--LESE----MMNKG   85 (338)
Q Consensus        28 nLG~~y~~~G~~dEAi~~~~k~~p~~~d----------------~lg~~deAi~~yekAL~l~Pd--~~~a----~~nLG   85 (338)
                      .+|..|.+.|++++|++.|.++......                ..+++.....+..+|-.+...  +.+.    ...-|
T Consensus        41 ~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk~~~g  120 (177)
T PF10602_consen   41 DLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLKVYEG  120 (177)
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHHH
Confidence            9999999999999999999996554433                277999999888888776433  2222    23357


Q ss_pred             HHHHHCCCHHHHHHHHHHHH
Q 019586           86 GDRVEQSRLFDAFLGSSSIW  105 (338)
Q Consensus        86 ~~l~~lGr~~eAi~~yekAL  105 (338)
                      ..++..++|.+|...|-.++
T Consensus       121 L~~l~~r~f~~AA~~fl~~~  140 (177)
T PF10602_consen  121 LANLAQRDFKEAAELFLDSL  140 (177)
T ss_pred             HHHHHhchHHHHHHHHHccC
Confidence            78889999999999887664

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=82.46  E-value=6.2  Score=30.82  Aligned_cols=47  Identities=9%  Similarity=0.063  Sum_probs=37.6

Q ss_pred             HHHHHHHHcCCHHHHHHHHHhhCcCCcCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 019586           28 NLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDLESEMMNKGGDR   88 (338)
Q Consensus        28 nLG~~y~~~G~~dEAi~~~~k~~p~~~d~lg~~deAi~~yekAL~l~Pd~~~a~~nLG~~l   88 (338)
                      ..+.-+-+.|++.+|+.+|              .+|+..+.+++..-||.+.-......+.
T Consensus        11 ~~AVe~D~~gr~~eAi~~Y--------------~~aIe~L~q~~~~~pD~~~k~~yr~ki~   57 (75)
T cd02682          11 INAVKAEKEGNAEDAITNY--------------KKAIEVLSQIVKNYPDSPTRLIYEQMIN   57 (75)
T ss_pred             HHHHHHHhcCCHHHHHHHH--------------HHHHHHHHHHHHhCCChHHHHHHHHHHH
Confidence            5556667899999999999              5699999999999999887655544443

This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.

>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function

Probab=81.83  E-value=15  Score=35.75  Aligned_cols=108  Identities=10%  Similarity=-0.066  Sum_probs=75.7

Q ss_pred             HHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcCCHHHHHHHHHhhCcCCcCC----------------CCCHHHHHHHHH
Q 019586            6 YIEAEDAYRRALSIAPDNNKMC-NLGICLMKQGRIGEAKETLRRVKPAVADG----------------PRGVDSHLKAYE   68 (338)
Q Consensus         6 ~eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k~~p~~~d~----------------lg~~deAi~~ye   68 (338)
                      .+.-+..|++||+.+|++...+ .+=.+..+...-++....++++...++..                .-.++.....|.
T Consensus        47 ~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~  126 (321)
T PF08424_consen   47 AERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVYE  126 (321)
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHHH
Confidence            4567889999999999888855 33334456667777777777754444431                236777788888


Q ss_pred             HHHHhCCCC------------------HHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCcc
Q 019586           69 RAQQMLKDL------------------ESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDH  113 (338)
Q Consensus        69 kAL~l~Pd~------------------~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~  113 (338)
                      +||+.....                  ...+.++...+.+.|..+.|+..++..++++-..+.
T Consensus       127 ~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n~~~P~  189 (321)
T PF08424_consen  127 KCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFNFFRPE  189 (321)
T ss_pred             HHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHcCCcc
Confidence            887654211                  133466777888999999999999999998876666

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]

Probab=81.42  E-value=5.1  Score=38.97  Aligned_cols=116  Identities=12%  Similarity=0.069  Sum_probs=81.4

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHhhCcCCcC--------------CCCCHHHHHHHHHHHHH----hCC--CCHHHHHHHH
Q 019586           26 MCNLGICLMKQGRIGEAKETLRRVKPAVAD--------------GPRGVDSHLKAYERAQQ----MLK--DLESEMMNKG   85 (338)
Q Consensus        26 a~nLG~~y~~~G~~dEAi~~~~k~~p~~~d--------------~lg~~deAi~~yekAL~----l~P--d~~~a~~nLG   85 (338)
                      .|.+..|+...|.|.-+...+.++...+++              +.|+.+.|..+|++.-+    ++.  ..-.++.+.+
T Consensus       180 my~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a  259 (366)
T KOG2796|consen  180 MYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSA  259 (366)
T ss_pred             HHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhh
Confidence            347778888999999999999885555533              36899999999884433    322  2235567788


Q ss_pred             HHHHHCCCHHHHHHHHHHHHccCCCCccc---ccchhhhcCccHHHHHhhhhcccCCCh
Q 019586           86 GDRVEQSRLFDAFLGSSSIWQPQPCKDHI---LPTTNAIKTRDDFADENIDSNVDVNPI  141 (338)
Q Consensus        86 ~~l~~lGr~~eAi~~yekALkl~P~~~~~---l~~l~~~~~~~~~A~e~~~~al~~~P~  141 (338)
                      .+|...++|.+|...|.+++..||.++..   .+.+..-.++..-|...+...+...|.
T Consensus       260 ~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~  318 (366)
T KOG2796|consen  260 FLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPR  318 (366)
T ss_pred             hheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCc
Confidence            89999999999999999999999998762   222233344444555666666655554

>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]

Probab=81.23  E-value=7.3  Score=43.10  Aligned_cols=54  Identities=13%  Similarity=0.069  Sum_probs=42.9

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcCCHHHHHHHHHhhCcCCcC
Q 019586            2 QQNNYIEAEDAYRRALSIAPDNNKMC-NLGICLMKQGRIGEAKETLRRVKPAVAD   55 (338)
Q Consensus         2 q~g~~eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k~~p~~~d   55 (338)
                      +.|++++|..+++..-...+++-... -+-.||..+|++++|...|+++...+|.
T Consensus        55 r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~~P~  109 (932)
T KOG2053|consen   55 RLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVHLYERANQKYPS  109 (932)
T ss_pred             HhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHHHHHHHHhhCCc
Confidence            57889999977666555566644444 8999999999999999999997777766

>KOG2047 consensus mRNA splicing factor [RNA processing and modification]

Probab=80.78  E-value=18  Score=39.07  Aligned_cols=103  Identities=11%  Similarity=0.049  Sum_probs=77.7

Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcCCHHHHHHHHHhhCcCCcC------------------CCCCHHHHH
Q 019586            4 NNYIEAEDAYRRALSIAPDNNKMC-NLGICLMKQGRIGEAKETLRRVKPAVAD------------------GPRGVDSHL   64 (338)
Q Consensus         4 g~~eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k~~p~~~d------------------~lg~~deAi   64 (338)
                      |-++.-...|.+.|.+.--.+..- |+|..+....-+++|.+.|++-.+.++.                  .-...+.|.
T Consensus       491 gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraR  570 (835)
T KOG2047|consen  491 GTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERAR  570 (835)
T ss_pred             ccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHH
Confidence            456667788999999876666655 9999999999999999999997776655                  123889999


Q ss_pred             HHHHHHHHhCCC-CH-HHHHHHHHHHHHCCCHHHHHHHHHHHHc
Q 019586           65 KAYERAQQMLKD-LE-SEMMNKGGDRVEQSRLFDAFLGSSSIWQ  106 (338)
Q Consensus        65 ~~yekAL~l~Pd-~~-~a~~nLG~~l~~lGr~~eAi~~yekALk  106 (338)
                      ..|++|++.-|. +. ..|...+..-.+-|--..|+..|++|-.
T Consensus       571 dLFEqaL~~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~  614 (835)
T KOG2047|consen  571 DLFEQALDGCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATS  614 (835)
T ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence            999999998873 22 2344445555566777788888877644

>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]

Probab=80.50  E-value=24  Score=35.22  Aligned_cols=95  Identities=19%  Similarity=0.156  Sum_probs=67.4

Q ss_pred             CHHHHHHHHHHHHH------------hCCCCHHHH-HHHHHHHHcCCHHHHHHHHHhhCcCCcCCCCCHHHHHHHHHHHH
Q 019586            5 NYIEAEDAYRRALS------------IAPDNNKMC-NLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQ   71 (338)
Q Consensus         5 ~~eeAi~~y~kALe------------ldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k~~p~~~d~lg~~deAi~~yekAL   71 (338)
                      .|.++...|..++.            .+|-+.+.+ .++.++..+|+++.|.+..++              |+-+|++++
T Consensus         9 ~Y~~~q~~F~~~v~~~Dp~~l~~ll~~~PyHidtLlqls~v~~~~gd~~~A~~lleR--------------ALf~~e~~~   74 (360)
T PF04910_consen    9 AYQEAQEQFYAAVQSHDPNALINLLQKNPYHIDTLLQLSEVYRQQGDHAQANDLLER--------------ALFAFERAF   74 (360)
T ss_pred             HHHHHHHHHHHHHHccCHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH--------------HHHHHHHHH
Confidence            45666666665555            356666655 999999999999999999876              555555443


Q ss_pred             HhC-------------------CCCH---HHHHHHHHHHHHCCCHHHHHHHHHHHHccCCC-Ccc
Q 019586           72 QML-------------------KDLE---SEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPC-KDH  113 (338)
Q Consensus        72 ~l~-------------------Pd~~---~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~-~~~  113 (338)
                      .-.                   +++-   .+++.....+.+.|-+.-|.++.+-.+.++|. ++-
T Consensus        75 ~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~  139 (360)
T PF04910_consen   75 HPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPL  139 (360)
T ss_pred             HHHhhhhhcccccCccccCCccccchHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcc
Confidence            311                   1111   44566677888999999999999999999998 554

Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].

>KOG4814 consensus Uncharacterized conserved protein [Function unknown]

Probab=80.39  E-value=7.2  Score=41.95  Aligned_cols=83  Identities=14%  Similarity=0.213  Sum_probs=58.0

Q ss_pred             CCHHHHHHHHHHHHHhCCCCHH------HH-HHHHHHHHcCCHHHHHHHHHhhCcCCcCCCCCHHHHHHHHHHHHHhCCC
Q 019586            4 NNYIEAEDAYRRALSIAPDNNK------MC-NLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKD   76 (338)
Q Consensus         4 g~~eeAi~~y~kALeldPd~a~------a~-nLG~~y~~~G~~dEAi~~~~k~~p~~~d~lg~~deAi~~yekAL~l~Pd   76 (338)
                      .+|..++++|...+..-|.+..      .. ++..||.++.++                     |.|.+++++|-+.+|.
T Consensus       368 ~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QL---------------------D~A~E~~~EAE~~d~~  426 (872)
T KOG4814|consen  368 EKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQL---------------------DNAVEVYQEAEEVDRQ  426 (872)
T ss_pred             HHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHH---------------------HHHHHHHHHHHhhccc
Confidence            3566666666666665543332      22 666666666666                     6677777778889999


Q ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHcc
Q 019586           77 LESEMMNKGGDRVEQSRLFDAFLGSSSIWQP  107 (338)
Q Consensus        77 ~~~a~~nLG~~l~~lGr~~eAi~~yekALkl  107 (338)
                      .+-.....-.+....|.-.+|+.+..+....
T Consensus       427 ~~l~q~~~~~~~~~E~~Se~AL~~~~~~~s~  457 (872)
T KOG4814|consen  427 SPLCQLLMLQSFLAEDKSEEALTCLQKIKSS  457 (872)
T ss_pred             cHHHHHHHHHHHHHhcchHHHHHHHHHHHhh
Confidence            8888777777888889999999988776544

>PF12862 Apc5: Anaphase-promoting complex subunit 5

Probab=80.38  E-value=6.1  Score=31.33  Aligned_cols=47  Identities=30%  Similarity=0.327  Sum_probs=34.0

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCCH---------HH-HHHHHHHHHcCCHHHHHHHHHh
Q 019586            2 QQNNYIEAEDAYRRALSIAPDNN---------KM-CNLGICLMKQGRIGEAKETLRR   48 (338)
Q Consensus         2 q~g~~eeAi~~y~kALeldPd~a---------~a-~nLG~~y~~~G~~dEAi~~~~k   48 (338)
                      +.|+|.+|++.+.+.+.......         .+ .++|.++...|++++|+..++.
T Consensus        10 ~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~e   66 (94)
T PF12862_consen   10 RSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEE   66 (94)
T ss_pred             HcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence            56899999888888887643211         12 2899999999999777666643

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	338
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	1e-11
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	3e-06
2kat_A	115	Uncharacterized protein; NESG, structure, structur	1e-10
2kat_A	115	Uncharacterized protein; NESG, structure, structur	7e-06
2kat_A	115	Uncharacterized protein; NESG, structure, structur	5e-04
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	3e-10
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	2e-05
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	3e-09
3k9i_A	117	BH0479 protein; putative protein binding protein,	4e-09
3k9i_A	117	BH0479 protein; putative protein binding protein,	4e-04
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	5e-09
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	1e-06
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	1e-08
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	2e-06
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	1e-05
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	2e-05
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	3e-05
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	4e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-08
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-04
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	2e-08
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	5e-08
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	3e-06
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	4e-06
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	1e-04
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	3e-08
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	3e-04
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	3e-08
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	1e-05
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	3e-05
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	6e-05
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	9e-05
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	3e-04
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	5e-08
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	3e-07
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	4e-06
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	3e-05
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	6e-05
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	1e-07
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	6e-07
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	2e-06
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	3e-05
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	8e-05
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	2e-04
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	1e-07
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	1e-07
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	4e-06
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	1e-07
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	2e-06
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	4e-06
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	3e-07
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	1e-06
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	2e-06
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	2e-04
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	5e-07
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	8e-07
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	1e-06
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	1e-06
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	7e-07
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	2e-06
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	2e-06
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	3e-06
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	3e-06
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	3e-06
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	4e-06
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	5e-06
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	9e-06
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	4e-05
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	5e-04
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	9e-07
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	2e-05
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	3e-05
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	4e-05
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	4e-05
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	2e-04
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	1e-06
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	2e-05
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	6e-05
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	7e-04
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	2e-06
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	2e-06
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	2e-06
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	3e-06
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	2e-06
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	3e-06
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	6e-06
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	3e-06
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	1e-05
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	3e-05
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	3e-05
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	6e-05
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	4e-06
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	3e-04
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	4e-06
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	2e-04
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	4e-06
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	4e-06
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	3e-04
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	5e-06
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	4e-04
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	6e-06
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	2e-04
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	7e-06
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	9e-06
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	2e-05
4g1t_A	472	Interferon-induced protein with tetratricopeptide	9e-06
4g1t_A	472	Interferon-induced protein with tetratricopeptide	6e-04
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	1e-05
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	2e-05
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	3e-05
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	1e-05
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	1e-05
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	3e-05
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	8e-05
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	1e-04
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	3e-04
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	1e-05
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	3e-05
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	5e-05
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	5e-05
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	3e-04
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	3e-04
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	4e-05
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	9e-05
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	8e-05
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	1e-04
2gw1_A	514	Mitochondrial precursor proteins import receptor;	1e-04
2gw1_A	514	Mitochondrial precursor proteins import receptor;	2e-04
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	1e-04
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	1e-04
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	2e-04
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	2e-04
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	6e-04
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	7e-04
3u4t_A	272	TPR repeat-containing protein; structural genomics	2e-04
3u4t_A	272	TPR repeat-containing protein; structural genomics	9e-04
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	2e-04
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	3e-04
2l6j_A	111	TPR repeat-containing protein associated with HSP;	4e-04
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	5e-04
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	8e-04

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142

 Score = 60.5 bits (147), Expect = 1e-11
 Identities = 13/81 (16%), Positives = 27/81 (33%), Gaps = 5/81 (6%)

Query: 1   MQQNNYIEAEDAYRRALSIAPDNNK-MCNLGICLMKQGRIGEAKETLRRVKPAVADGPRG 59
                Y +A  +Y     +  +  +   +   C ++ G +  A+      +   A  P  
Sbjct: 63  QSLGLYEQALQSYSYGALMDINEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPA- 121

Query: 60  VDSHLKAYERAQQMLKDLESE 80
              H     RA  ML+ + + 
Sbjct: 122 ---HEALAARAGAMLEAVTAR 139

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142

 Score = 45.1 bits (107), Expect = 3e-06
 Identities = 12/79 (15%), Positives = 24/79 (30%), Gaps = 5/79 (6%)

Query: 1   MQQNNYIEAEDAYRRALSIAPDNNK-MCNLGICLMKQGRIGEAKETLRRVKPAVADGPRG 59
            Q   + +A+  ++    +   + +    LG C    G   +A ++              
Sbjct: 29  YQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSY---GALMDINE 85

Query: 60  VDSHLKAYERAQQMLKDLE 78
                 A E     L DL+
Sbjct: 86  PRFPFHAAE-CHLQLGDLD 103

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Length = 115

 Score = 57.3 bits (139), Expect = 1e-10
 Identities = 17/81 (20%), Positives = 25/81 (30%), Gaps = 6/81 (7%)

Query: 1   MQQNNYIEAEDAYRRALSIAPDNNK-MCNLGICLMKQGRIGEAKETLRRVKPAVADGPRG 59
            +   +  A    R AL   P  +     LG  L  QG    A++        +A     
Sbjct: 30  AEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWES---GLAAAQSR 86

Query: 60  VDSHLKAYERAQQMLKDLESE 80
            D      +  Q  L+ L  E
Sbjct: 87  GDQQ--VVKELQVFLRRLARE 105

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Length = 115

 Score = 43.5 bits (103), Expect = 7e-06
 Identities = 12/71 (16%), Positives = 23/71 (32%), Gaps = 8/71 (11%)

Query: 8  EAEDAYRRALSIAPDNNKM-CNLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKA 66
             +     L+   DN  +   LG    +  +   A   LR    A+   P     +  A
Sbjct: 3  AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRA---ALDFDPT----YSVA 55

Query: 67 YERAQQMLKDL 77
          ++   + L+  
Sbjct: 56 WKWLGKTLQGQ 66

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Length = 115

 Score = 38.1 bits (89), Expect = 5e-04
 Identities = 8/47 (17%), Positives = 14/47 (29%), Gaps = 3/47 (6%)

Query: 1   MQQNNYIEAEDAYRRALSIAPDNNKM---CNLGICLMKQGRIGEAKE 44
             Q +   A  A+   L+ A           L + L +  R    + 
Sbjct: 64  QGQGDRAGARQAWESGLAAAQSRGDQQVVKELQVFLRRLAREDALEH 110

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151

 Score = 56.7 bits (137), Expect = 3e-10
 Identities = 15/79 (18%), Positives = 31/79 (39%), Gaps = 9/79 (11%)

Query: 1   MQQNNYIEAEDAYRRALSIAPDNNK-MCNLGICLMKQGRIGEAKETLRRVKPAVADGPRG 59
             +  + +A D Y  A ++  ++   + + G C ++     +AKE        +      
Sbjct: 81  QIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQLRLKAPLKAKECFEL---VIQHSN-- 135

Query: 60  VDSHLKAYERAQQMLKDLE 78
            D  LK   +AQ  L  ++
Sbjct: 136 -DEKLK--IKAQSYLDAIQ 151

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151

 Score = 43.2 bits (102), Expect = 2e-05
 Identities = 7/49 (14%), Positives = 14/49 (28%), Gaps = 1/49 (2%)

Query: 1  MQQNNYIEAEDAYRRALSIAPDNNK-MCNLGICLMKQGRIGEAKETLRR 48
            +    EAE  +R        N   +  L      + +  +A +    
Sbjct: 47 YNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAV 95

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Length = 100

 Score = 52.7 bits (127), Expect = 3e-09
 Identities = 11/80 (13%), Positives = 22/80 (27%), Gaps = 6/80 (7%)

Query: 1  MQQNNYIEAEDAYRRALSIAPDNNKM-CNLGICLMKQGRIGEAKETLRRVKPAVADGPRG 59
          ++ +N   A   +   +   PD      +LG    +  R  +A +T  +    +      
Sbjct: 18 LKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQ---GIEVAREE 74

Query: 60 VDSHLKAYERAQQMLKDLES 79
                     Q      E 
Sbjct: 75 GTQK--DLSELQDAKLKAEG 92

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117

 Score = 52.8 bits (127), Expect = 4e-09
 Identities = 13/67 (19%), Positives = 28/67 (41%), Gaps = 6/67 (8%)

Query: 5   NYIEAEDAYRRALSIAPDNNKM-CNLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSH 63
            Y +AE      +   P++  +     + L   GR  +  E L +    +A+     D  
Sbjct: 42  EYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVELLLK---IIAETSD--DET 96

Query: 64  LKAYERA 70
           +++Y++A
Sbjct: 97  IQSYKQA 103

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117

 Score = 38.5 bits (90), Expect = 4e-04
 Identities = 10/60 (16%), Positives = 16/60 (26%), Gaps = 7/60 (11%)

Query: 8  EAEDAYRRALSIAPDNNK----MCNLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSH 63
          +A   Y +A++              LG      G   +A+  L      V   P      
Sbjct: 8  QAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLAN---GVKQFPNHQALR 64

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148

 Score = 53.4 bits (128), Expect = 5e-09
 Identities = 14/81 (17%), Positives = 30/81 (37%), Gaps = 5/81 (6%)

Query: 1   MQQNNYIEAEDAYRRALSIAPDNNKM-CNLGICLMKQGRIGEAKETLRRVKPAVADGPRG 59
                Y  A  +Y     +     +   +   CL++ G + EA+  L   +  +A+ P  
Sbjct: 66  QAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPE- 124

Query: 60  VDSHLKAYERAQQMLKDLESE 80
                +   R   ML+ ++ +
Sbjct: 125 ---FXELSTRVSSMLEAIKLK 142

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148

 Score = 46.4 bits (110), Expect = 1e-06
 Identities = 11/82 (13%), Positives = 22/82 (26%), Gaps = 4/82 (4%)

Query: 1   MQQNNYIEAEDAYRRALSIAPDNNK-MCNLGICLMKQGRIGEAKETLRR---VKPAVADG 56
            Q   Y +A   ++    +   +++    LG C    G+   A  +      +       
Sbjct: 32  YQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRF 91

Query: 57  PRGVDSHLKAYERAQQMLKDLE 78
           P      L       +    L 
Sbjct: 92  PFHAAECLLQXGELAEAESGLF 113

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 54.6 bits (132), Expect = 1e-08
 Identities = 13/49 (26%), Positives = 23/49 (46%), Gaps = 1/49 (2%)

Query: 1   MQQNNYIEAEDAYRRALSIAPDNNKM-CNLGICLMKQGRIGEAKETLRR 48
              NN   AE  + +ALSIAP++  +   +G+   + G    A++    
Sbjct: 170 GLTNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLD 218

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 48.1 bits (115), Expect = 2e-06
 Identities = 12/49 (24%), Positives = 19/49 (38%), Gaps = 1/49 (2%)

Query: 1   MQQNNYIEAEDAYRRALSIAPDN-NKMCNLGICLMKQGRIGEAKETLRR 48
            +   Y EA D +R+AL + P N +    +G      G    A +    
Sbjct: 247 RKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHT 295

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 45.4 bits (108), Expect = 1e-05
 Identities = 12/59 (20%), Positives = 17/59 (28%), Gaps = 10/59 (16%)

Query: 2   QQNNYIEAEDAYRRALSIAPDNNKM----------CNLGICLMKQGRIGEAKETLRRVK 50
           Q   +  AE  +  AL                    NLG    K  +  EA +  R+  
Sbjct: 205 QNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQAL 263

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 45.0 bits (107), Expect = 2e-05
 Identities = 11/43 (25%), Positives = 17/43 (39%), Gaps = 1/43 (2%)

Query: 1   MQQNNYIEAEDAYRRALSIAPDNNK-MCNLGICLMKQGRIGEA 42
               N+  A D +  AL +  D+   +  LG C+       EA
Sbjct: 281 SLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIGDSEA 323

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 44.2 bits (105), Expect = 3e-05
 Identities = 7/47 (14%), Positives = 16/47 (34%), Gaps = 1/47 (2%)

Query: 3   QNNYIEAEDAYRRALSIAPDN-NKMCNLGICLMKQGRIGEAKETLRR 48
           ++ + +A  AY  A  +       M  +G+          A+    +
Sbjct: 138 ESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQ 184

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 43.8 bits (104), Expect = 4e-05
 Identities = 3/49 (6%), Positives = 13/49 (26%), Gaps = 1/49 (2%)

Query: 2  QQNNYIEAEDAYRRALSIAPDNNK-MCNLGICLMKQGRIGEAKETLRRV 49
             ++          +   P +   +      L++  +  E      ++
Sbjct: 34 YNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKL 82

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 55.2 bits (132), Expect = 2e-08
 Identities = 57/374 (15%), Positives = 101/374 (27%), Gaps = 133/374 (35%)

Query: 53  VADGPRGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQS-RLFD-----------AFLG 100
           V D P+ +             L   E + +    D V  + RLF             F+ 
Sbjct: 38  VQDMPKSI-------------LSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVE 84

Query: 101 SS---------SIWQPQPCKDHILPTTNAIKTRDDFADEN---IDSNVDVNPIVLSKHRS 148
                      S  + +  +   + T   I+ RD   ++N      NV      L   ++
Sbjct: 85  EVLRINYKFLMSPIKTE-QRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQA 143

Query: 149 VKKLFPTANAIKTQENFADENINANIVVN------QTVLA----QQRGVQQLAPFGNSWN 198
           + +L P                  N++++      +T +A        VQ    F   W 
Sbjct: 144 LLELRP----------------AKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFW- 186

Query: 199 IDAPPFYSSKFVKEPIVK-----DPIGNQYHESLKRTRSGNATNSMRLPDVGEHTRPFAM 253
           ++     S + V E + K     DP      +     +       +R+  +    R    
Sbjct: 187 LNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIK-------LRIHSIQAELRRLLK 239

Query: 254 EPEKPE---------NK---------------TRRLS--------QSSEESGDKLSYLLP 281
                          N                TR            ++  S D  S  L 
Sbjct: 240 SKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLT 299

Query: 282 DDEDFEEAIIAAVLG-STNEQPGKSSEASNNS----SVIIEKKID-------------KR 323
            DE   ++++   L     + P    E    +    S+I E   D              +
Sbjct: 300 PDE--VKSLLLKYLDCRPQDLP---REVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDK 354

Query: 324 LKVFQDITL-SLSP 336
           L    + +L  L P
Sbjct: 355 LTTIIESSLNVLEP 368

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 49.5 bits (117), Expect = 1e-06
 Identities = 48/309 (15%), Positives = 99/309 (32%), Gaps = 77/309 (24%)

Query: 28  NLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDLESEMMNKGG- 86
           NL  C   +  +   ++ L ++ P          +        Q  L+ L      +   
Sbjct: 188 NLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCL 247

Query: 87  ---DRVEQSRLFDAFLGSSSIWQPQPCKDHILPTTNAIKTRD----DFADENIDSNVDVN 139
                V+ ++ ++AF  S        CK  IL T     TR     DF      +++ ++
Sbjct: 248 LVLLNVQNAKAWNAFNLS--------CK--ILLT-----TRFKQVTDFLSAATTTHISLD 292

Query: 140 PI-----------VLSKH---------RSVKKLFPTA---------NAIKTQENFADENI 170
                        +L K+         R V    P           + + T +N+   N 
Sbjct: 293 HHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNC 352

Query: 171 NANIVVNQTVLAQ------QRGVQQLAPFGNSWNIDAPPFYSSKFVKEPIVKDP--IGNQ 222
           +    + ++ L        ++   +L+ F  S +I  P    S    + I  D   + N+
Sbjct: 353 DKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHI--PTILLSLIWFDVIKSDVMVVVNK 410

Query: 223 YHES--LKRTRSGNATNSMRLPDVGEHTRPFAMEPEKPENKT---RRLSQS-SEESGDKL 276
            H+   +++       +++ +P +    +       K EN+    R +    +       
Sbjct: 411 LHKYSLVEK---QPKESTISIPSIYLELK------VKLENEYALHRSIVDHYNIPKTFDS 461

Query: 277 SYLLPDDED 285
             L+P   D
Sbjct: 462 DDLIPPYLD 470

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.5 bits (99), Expect = 2e-04
 Identities = 45/228 (19%), Positives = 74/228 (32%), Gaps = 70/228 (30%)

Query: 110 CKDHILPT-TNAIKTRDDFAD-----ENIDSNVDVNPIVLSKHR--SVKKLFPTANAIKT 161
            KD IL    +A     D  D     ++I S  +++ I++SK       +LF T   + +
Sbjct: 18  YKD-ILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWT---LLS 73

Query: 162 QENFADENINANIVVNQTVLAQQRGVQQLAPFGNSWNIDAPPFYSSKFVKEPIVKDPIGN 221
           +                    Q+  VQ+         I+   F  S    E      +  
Sbjct: 74  K--------------------QEEMVQKF--VEEVLRINYK-FLMSPIKTEQRQPSMMTR 110

Query: 222 QYHESLKRTRSGNATNSMRLPDVGEHTRPFAMEPEKPENKTRRLSQSSEESGDKLSYLLP 281
            Y E   R  + N              + FA       N +R       +   KL   L 
Sbjct: 111 MYIEQRDRLYNDN--------------QVFA-----KYNVSR------LQPYLKLRQALL 145

Query: 282 DDEDFEEAIIAAVLGSTNEQPGKSSEASNNSSVIIEKKIDKRL--KVF 327
           +    +  +I  VLGS     GK+  A     V +  K+  ++  K+F
Sbjct: 146 ELRPAKNVLIDGVLGS-----GKTWVA---LDVCLSYKVQCKMDFKIF 185

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score = 53.4 bits (129), Expect = 2e-08
 Identities = 15/61 (24%), Positives = 24/61 (39%), Gaps = 6/61 (9%)

Query: 1   MQQNNYIEAEDAYRRALSIAPDN-NKMCNLGICLMKQGRIGEAKETLRRV-----KPAVA 54
             +     A++ YR+AL+    N   + N G  L +Q R  EA + L         P  +
Sbjct: 82  QTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERS 141

Query: 55  D 55
            
Sbjct: 142 R 142

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score = 52.3 bits (126), Expect = 5e-08
 Identities = 11/81 (13%), Positives = 30/81 (37%), Gaps = 5/81 (6%)

Query: 1   MQQNNYIEAEDAYRRALSIAPDNNK-MCNLGICLMKQGRIGEAKETLRRVKPAVADGPRG 59
           +Q     +A++ + ++L +  +       +   L K+     A++           G + 
Sbjct: 152 LQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPARQYYDL---FAQGGGQN 208

Query: 60  VDSHLKAYERAQQMLKDLESE 80
             S L    R  ++ +D ++ 
Sbjct: 209 ARSLLLGI-RLAKVFEDRDTA 228

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score = 46.9 bits (112), Expect = 3e-06
 Identities = 21/85 (24%), Positives = 31/85 (36%), Gaps = 13/85 (15%)

Query: 1   MQQNNYIEAEDAYRRALSIAPDNNKM-CNLGICLMKQGRIGEAKETLRRVKPAVADGPRG 59
           +Q+ N  +A+   R+AL I P +      L +    +     A E  R+   A+A   R 
Sbjct: 48  LQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRK---ALASDSRN 104

Query: 60  VDSH---------LKAYERAQQMLK 75
                         K YE A Q L 
Sbjct: 105 ARVLNNYGGFLYEQKRYEEAYQRLL 129

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score = 46.5 bits (111), Expect = 4e-06
 Identities = 12/50 (24%), Positives = 24/50 (48%), Gaps = 3/50 (6%)

Query: 2   QQNNYIEAEDAYRRAL--SIAPDNNK-MCNLGICLMKQGRIGEAKETLRR 48
           +Q  Y EA      A   ++ P+ ++   NLG+  ++  +  +AKE   +
Sbjct: 117 EQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEK 166

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score = 41.9 bits (99), Expect = 1e-04
 Identities = 13/55 (23%), Positives = 19/55 (34%), Gaps = 4/55 (7%)

Query: 1   MQQNNYIEAEDAYRRALSIAPDNNKMCNLGICLMK-QGRIGEAKE---TLRRVKP 51
            ++  Y+ A   Y         N +   LGI L K       A      L+R+ P
Sbjct: 186 YKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYP 240

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121

 Score = 50.5 bits (121), Expect = 3e-08
 Identities = 8/49 (16%), Positives = 14/49 (28%), Gaps = 1/49 (2%)

Query: 1   MQQNNYIEAEDAYRRALSIAPDNNK-MCNLGICLMKQGRIGEAKETLRR 48
            +      A  A   A  + P +      L +    +     A  +LR 
Sbjct: 62  AENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRA 110

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121

 Score = 39.4 bits (92), Expect = 3e-04
 Identities = 13/65 (20%), Positives = 24/65 (36%), Gaps = 4/65 (6%)

Query: 1  MQQNNYIEAEDAYRRALSIAPDNNK-MCNLGICLMKQGRIGEAKETLRRVKPAVADGPRG 59
          ++  N  EA  A+       P+  +   +LG+   +  + G A   L     A    P+ 
Sbjct: 28 LKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNH---ARMLDPKD 84

Query: 60 VDSHL 64
          +  H 
Sbjct: 85 IAVHA 89

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 54.1 bits (130), Expect = 3e-08
 Identities = 7/49 (14%), Positives = 19/49 (38%), Gaps = 1/49 (2%)

Query: 1   MQQNNYIEAEDAYRRALSIAPDNNKM-CNLGICLMKQGRIGEAKETLRR 48
           MQ  N + A +  + + ++   +  +   LG+    +  +  A    + 
Sbjct: 452 MQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQN 500

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 46.0 bits (109), Expect = 1e-05
 Identities = 8/49 (16%), Positives = 19/49 (38%), Gaps = 1/49 (2%)

Query: 1   MQQNNYIEAEDAYRRALSIAPDNNKM-CNLGICLMKQGRIGEAKETLRR 48
            +   Y  A DA  + L ++ ++  +   + +  + +   G A   L  
Sbjct: 527 RKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHE 575

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 44.4 bits (105), Expect = 3e-05
 Identities = 7/42 (16%), Positives = 14/42 (33%), Gaps = 1/42 (2%)

Query: 2   QQNNYIEAEDAYRRALSIAPDNNK-MCNLGICLMKQGRIGEA 42
            ++ +I+      + L I P N          L + G   + 
Sbjct: 317 VRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKL 358

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 43.7 bits (103), Expect = 6e-05
 Identities = 12/47 (25%), Positives = 19/47 (40%), Gaps = 1/47 (2%)

Query: 3   QNNYIEAEDAYRRALSIAPDN-NKMCNLGICLMKQGRIGEAKETLRR 48
           +  + +A  AY  A  +          LG+  M+ G I  A E L+ 
Sbjct: 420 EGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQS 466

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 43.3 bits (102), Expect = 9e-05
 Identities = 9/57 (15%), Positives = 18/57 (31%), Gaps = 8/57 (14%)

Query: 2   QQNNYIEAEDAYRRALSIAPDNNKM--------CNLGICLMKQGRIGEAKETLRRVK 50
            +++   A + ++ AL +                NLG    K      A + L +  
Sbjct: 487 NKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGL 543

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 41.4 bits (97), Expect = 3e-04
 Identities = 6/49 (12%), Positives = 15/49 (30%), Gaps = 1/49 (2%)

Query: 1   MQQNNYIEAEDAYRRALSIAPDN-NKMCNLGICLMKQGRIGEAKETLRR 48
            +     +        +   P+       +GI  +   +I EA+    +
Sbjct: 350 HESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSK 398

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 52.7 bits (127), Expect = 5e-08
 Identities = 10/97 (10%), Positives = 25/97 (25%), Gaps = 7/97 (7%)

Query: 2   QQNNYIEAEDAYRRALSIAPDNNK-MCNLGICLMKQGRIGEAKETLRRVKPAVADGPRGV 60
           +      A  A   A  + P +      L +    +     A  +LR     +   P+  
Sbjct: 67  ENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRA---WLLSQPQYE 123

Query: 61  DSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDA 97
                     Q  +   +  + ++       +   + 
Sbjct: 124 QLG---SVNLQADVDIDDLNVQSEDFFFAAPNEYREC 157

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 50.4 bits (121), Expect = 3e-07
 Identities = 18/82 (21%), Positives = 31/82 (37%), Gaps = 6/82 (7%)

Query: 3   QNNYIEAEDAYRRALSIAPDNNK-MCNLGICLMKQGRIGEAKETLRRV---KP--AVADG 56
            N   EA DAY RAL I P   + M N+ +      +   A + L R    +       G
Sbjct: 219 GNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTG 278

Query: 57  PRGVDSHLKAYERAQQMLKDLE 78
               ++    ++  + +L  + 
Sbjct: 279 EASREATRSMWDFFRMLLNVMN 300

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 46.9 bits (112), Expect = 4e-06
 Identities = 16/48 (33%), Positives = 22/48 (45%), Gaps = 1/48 (2%)

Query: 2   QQNNYIEAEDAYRRALSIAPDNNKM-CNLGICLMKQGRIGEAKETLRR 48
             NNY  A    RRA+ + PD+ ++   LG  L    R  EA +   R
Sbjct: 184 LSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNR 231

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 44.2 bits (105), Expect = 3e-05
 Identities = 11/49 (22%), Positives = 19/49 (38%), Gaps = 1/49 (2%)

Query: 1  MQQNNYIEAEDAYRRALSIAPDN-NKMCNLGICLMKQGRIGEAKETLRR 48
          ++  N  EA  A+      AP+      +LG+   +  + G A   L  
Sbjct: 32 LKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNH 80

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 43.0 bits (102), Expect = 6e-05
 Identities = 13/55 (23%), Positives = 22/55 (40%), Gaps = 4/55 (7%)

Query: 1   MQQNNYIEAEDAYRRALSIAPDNNKM-CNLGICLMKQGRIGEAKETLRR---VKP 51
              N Y E       AL + P++ ++  +LG+          A   LRR   ++P
Sbjct: 149 AAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRP 203

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 52.0 bits (125), Expect = 1e-07
 Identities = 19/85 (22%), Positives = 32/85 (37%), Gaps = 6/85 (7%)

Query: 2   QQNNYIEAEDAYRRALSIAPDNNK-MCNLGICLMKQGRIGEAKETLRR---VKP--AVAD 55
           +    + A  A RR L + PDN   +  L +    +    +A E LR      P  A   
Sbjct: 110 ENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLV 169

Query: 56  GPRGVDSHLKAYERAQQMLKDLESE 80
            P    +       ++++L  L S+
Sbjct: 170 TPAEEGAGGAGLGPSKRILGSLLSD 194

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 49.6 bits (119), Expect = 6e-07
 Identities = 18/47 (38%), Positives = 21/47 (44%), Gaps = 1/47 (2%)

Query: 3   QNNYIEAEDAYRRALSIAPDNNK-MCNLGICLMKQGRIGEAKETLRR 48
            N   EA  AYRRAL + P   +   NLGI  +  G   EA E    
Sbjct: 264 GNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLE 310

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 48.1 bits (115), Expect = 2e-06
 Identities = 14/48 (29%), Positives = 21/48 (43%), Gaps = 1/48 (2%)

Query: 2   QQNNYIEAEDAYRRALSIAPDNNKM-CNLGICLMKQGRIGEAKETLRR 48
               Y +A D +  ALS+ P++  +   LG  L    +  EA    RR
Sbjct: 229 LSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRR 276

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 44.3 bits (105), Expect = 3e-05
 Identities = 10/49 (20%), Positives = 19/49 (38%), Gaps = 1/49 (2%)

Query: 1   MQQNNYIEAEDAYRRALSIAPDNNKM-CNLGICLMKQGRIGEAKETLRR 48
           +Q+ +   A   +  A+   P + +    LG    +  +   A   LRR
Sbjct: 75  LQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRR 123

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 43.1 bits (102), Expect = 8e-05
 Identities = 9/60 (15%), Positives = 18/60 (30%), Gaps = 12/60 (20%)

Query: 1   MQQNNYIEAEDAYRRALSIAPDN------------NKMCNLGICLMKQGRIGEAKETLRR 48
           +    + EA + +  AL++   +            N    L + L   G+         R
Sbjct: 296 INLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADAR 355

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 41.9 bits (99), Expect = 2e-04
 Identities = 10/57 (17%), Positives = 24/57 (42%), Gaps = 6/57 (10%)

Query: 1   MQQNNYIEAEDAYRRALSIAPDNNKM---CNLGICLMKQGRIGEAKETLRR---VKP 51
           +  + ++E ++ +  A+ + P +      C LG+     G   +A +       V+P
Sbjct: 192 LSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRP 248

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score = 52.5 bits (125), Expect = 1e-07
 Identities = 21/111 (18%), Positives = 34/111 (30%), Gaps = 20/111 (18%)

Query: 1   MQQNNYIEAEDAYRRALSIAPDNNKM-CNLGICLMKQGRIGEAKETLRRVKPAVADGPRG 59
            QQ    EA   Y+ A+ I+P       N+G  L +   +  A +   R   A+   P  
Sbjct: 54  QQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTR---AIQINPAF 110

Query: 60  VDSH----------------LKAYERAQQMLKDLESEMMNKGGDRVEQSRL 94
            D+H                + +Y  A ++  D      N           
Sbjct: 111 ADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDW 161

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score = 52.1 bits (124), Expect = 1e-07
 Identities = 26/114 (22%), Positives = 42/114 (36%), Gaps = 20/114 (17%)

Query: 1   MQQNNYIEAEDAYRRALSIAPDNNK-MCNLGICLMKQGRIGEAKETLRRVKPAVADGPRG 59
            +Q N  EA   YR+AL + P+      NL   L +QG++ EA    +    A+   P  
Sbjct: 20  REQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKE---AIRISPTF 76

Query: 60  VDSH----------------LKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDA 97
            D++                L+ Y RA Q+         N      +   + +A
Sbjct: 77  ADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEA 130

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score = 47.5 bits (112), Expect = 4e-06
 Identities = 20/122 (16%), Positives = 34/122 (27%), Gaps = 4/122 (3%)

Query: 1   MQQNNYIEAEDAYRRALSIAPDNNK-MCNLGICLMKQGRIGEAKETLRRVKPAVADGPRG 59
               N  EA  +YR AL + PD     CNL  CL       +  E +++    V+     
Sbjct: 122 KDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMKK---LVSIVADQ 178

Query: 60  VDSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDHILPTTN 119
           ++ +          +    S    K       +   D            P    +     
Sbjct: 179 LEKNRLPSVHPHHSMLYPLSHGFRKAIAERHGNLCLDKINVLHKPPYEHPKDLKLSDGRL 238

Query: 120 AI 121
            +
Sbjct: 239 RV 240

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225

 Score = 50.7 bits (122), Expect = 1e-07
 Identities = 11/50 (22%), Positives = 21/50 (42%), Gaps = 1/50 (2%)

Query: 1   MQQNNYIEAEDAYRRALSIAPDNNK-MCNLGICLMKQGRIGEAKETLRRV 49
            +Q  +  AE   +R+L+  P        L    M  G++G+A    ++ 
Sbjct: 124 AKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGDADYYFKKY 173

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225

 Score = 47.3 bits (113), Expect = 2e-06
 Identities = 21/117 (17%), Positives = 39/117 (33%), Gaps = 23/117 (19%)

Query: 1   MQQNNYIEAEDAYRRALSIAPDN-NKMCNLGICLMKQ-GRIGEAKETLRRVKPAVADG-- 56
                  +A++++R+ALSI PD+     N G  L  +  R  E+     +   A+AD   
Sbjct: 53  QYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCGRLNRPAESMAYFDK---ALADPTY 109

Query: 57  PRGVDSH----------------LKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDA 97
           P    ++                    +R+                 ++   +L DA
Sbjct: 110 PTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGDA 166

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225

 Score = 46.1 bits (110), Expect = 4e-06
 Identities = 10/49 (20%), Positives = 18/49 (36%), Gaps = 1/49 (2%)

Query: 1  MQQNNYIEAEDAYRRALSIAPDNNKM-CNLGICLMKQGRIGEAKETLRR 48
          M+  +Y +A  +   AL   P N                  +A+E+ R+
Sbjct: 19 MRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQ 67

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 50.4 bits (121), Expect = 3e-07
 Identities = 12/48 (25%), Positives = 20/48 (41%), Gaps = 1/48 (2%)

Query: 2   QQNNYIEAEDAYRRALSIAPDNNK-MCNLGICLMKQGRIGEAKETLRR 48
           +  N   A  A +R L + P+N K +  L +         +A E L+ 
Sbjct: 111 ENENEQAAIVALQRCLELQPNNLKALMALAVSYTNTSHQQDACEALKN 158

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 48.5 bits (116), Expect = 1e-06
 Identities = 16/47 (34%), Positives = 20/47 (42%), Gaps = 1/47 (2%)

Query: 3   QNNYIEAEDAYRRALSIAPDNNK-MCNLGICLMKQGRIGEAKETLRR 48
            +   EA +AY RAL I P   +   NLGI  +  G   EA      
Sbjct: 260 GDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAVSNFLT 306

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 48.1 bits (115), Expect = 2e-06
 Identities = 14/48 (29%), Positives = 21/48 (43%), Gaps = 1/48 (2%)

Query: 2   QQNNYIEAEDAYRRALSIAPDNNKM-CNLGICLMKQGRIGEAKETLRR 48
               +  A DA+  AL++ P++  +   LG  L    R  EA E   R
Sbjct: 225 LSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTR 272

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 42.0 bits (99), Expect = 2e-04
 Identities = 8/49 (16%), Positives = 17/49 (34%), Gaps = 1/49 (2%)

Query: 1   MQQNNYIEAEDAYRRALSIAPDNNKM-CNLGICLMKQGRIGEAKETLRR 48
           +++ +          A+   P + +    LGI   +      A   L+R
Sbjct: 76  LKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQR 124

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217

 Score = 48.7 bits (117), Expect = 5e-07
 Identities = 11/57 (19%), Positives = 20/57 (35%), Gaps = 3/57 (5%)

Query: 2   QQNNYIEAEDAYRRALSIAPDNNKMCNLGICLMKQGRIGEAKETLRRV---KPAVAD 55
                 +AE + ++AL++         L    +  GR+ EA     +     P   D
Sbjct: 130 LLGERDKAEASLKQALALEDTPEIRSALAELYLSMGRLDEALAQYAKALEQAPKDLD 186

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217

 Score = 48.3 bits (116), Expect = 8e-07
 Identities = 12/58 (20%), Positives = 18/58 (31%), Gaps = 4/58 (6%)

Query: 2  QQNNYIEAEDAYRRALSIAPDNNKM-CNLGICLMKQGRIGEAKETLRR---VKPAVAD 55
              Y  A   + RAL   P + +    L    +K G +  A E  +      P    
Sbjct: 17 ALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLG 74

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217

 Score = 47.5 bits (114), Expect = 1e-06
 Identities = 11/53 (20%), Positives = 17/53 (32%), Gaps = 2/53 (3%)

Query: 2   QQNNYIEAEDAYRRALSIAPDNNKM-CNLGICLMKQGRIGEAKETLR-RVKPA 52
                 EA   Y +AL  AP +  +       L+ +G+  EA           
Sbjct: 163 SMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALEHHHH 215

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217

 Score = 47.5 bits (114), Expect = 1e-06
 Identities = 7/48 (14%), Positives = 17/48 (35%), Gaps = 1/48 (2%)

Query: 2   QQNNYIEAEDAYRRALSIAPDNNK-MCNLGICLMKQGRIGEAKETLRR 48
            +    +A    + A  + P         G+     G   +A+ +L++
Sbjct: 96  GKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQ 143

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 49.5 bits (119), Expect = 7e-07
 Identities = 18/58 (31%), Positives = 26/58 (44%), Gaps = 4/58 (6%)

Query: 2   QQNNYIEAEDAYRRALSIAPDNNKM-CNLGICLMKQGRIGEAKETLRRV---KPAVAD 55
           +Q     A D YRRA+ + P      CNL   L ++G + EA++         P  AD
Sbjct: 249 EQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHAD 306

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 47.9 bits (115), Expect = 2e-06
 Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 1/48 (2%)

Query: 2   QQNNYIEAEDAYRRALSIAPDNNK-MCNLGICLMKQGRIGEAKETLRR 48
           +   +  A  AY RALS++P++     NL     +QG I  A +T RR
Sbjct: 215 EARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRR 262

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 47.9 bits (115), Expect = 2e-06
 Identities = 19/59 (32%), Positives = 27/59 (45%), Gaps = 4/59 (6%)

Query: 1   MQQNNYIEAEDAYRRALSIAPDNNK-MCNLGICLMKQGRIGEAKETLRR---VKPAVAD 55
            ++ +  EAED Y  AL + P +   + NL     +QG I EA    R+   V P  A 
Sbjct: 282 KEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAA 340

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 47.5 bits (114), Expect = 3e-06
 Identities = 17/58 (29%), Positives = 23/58 (39%), Gaps = 4/58 (6%)

Query: 2   QQNNYIEAEDAYRRALSIAPDNNKM-CNLGICLMKQGRIGEAKETLRRV---KPAVAD 55
              +   A  AY  AL   PD   +  +LG  L   GR+ EAK    +    +P  A 
Sbjct: 113 AAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAV 170

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 47.5 bits (114), Expect = 3e-06
 Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 4/58 (6%)

Query: 2   QQNNYIEAEDAYRRALSIAPDNNKM-CNLGICLMKQGRIGEAKETLRRV---KPAVAD 55
           +Q N  EA   YR+AL + P+      NL   L +QG++ EA    +      P  AD
Sbjct: 317 EQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFAD 374

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 47.5 bits (114), Expect = 3e-06
 Identities = 11/48 (22%), Positives = 18/48 (37%), Gaps = 1/48 (2%)

Query: 2  QQNNYIEAEDAYRRALSIAPDNNKM-CNLGICLMKQGRIGEAKETLRR 48
          Q      +      A+   P   +   NLG    ++G++ EA E  R 
Sbjct: 45 QCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRH 92

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 46.8 bits (112), Expect = 4e-06
 Identities = 12/59 (20%), Positives = 19/59 (32%), Gaps = 4/59 (6%)

Query: 1   MQQNNYIEAEDAYRRALSIAPDNNK-MCNLGICLMKQGRIGEAKETLRRV---KPAVAD 55
             Q     A   + +A+++ P+      NLG  L +      A     R     P  A 
Sbjct: 180 NAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAV 238

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 46.8 bits (112), Expect = 5e-06
 Identities = 14/58 (24%), Positives = 19/58 (32%), Gaps = 4/58 (6%)

Query: 2   QQNNYIEAEDAYRRALSIAPDNNKM-CNLGICLMKQGRIGEAKETLRRV---KPAVAD 55
                 EA+  Y +A+   P+      NLG     QG I  A     +     P   D
Sbjct: 147 ALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLD 204

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 46.0 bits (110), Expect = 9e-06
 Identities = 14/58 (24%), Positives = 22/58 (37%), Gaps = 4/58 (6%)

Query: 2   QQNNYIEAEDAYRRALSIAPDNNKM-CNLGICLMKQGRIGEAKETLRRV---KPAVAD 55
           ++    EA + YR AL + PD      NL   L+  G +  A +         P +  
Sbjct: 79  ERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYC 136

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 44.1 bits (105), Expect = 4e-05
 Identities = 10/58 (17%), Positives = 19/58 (32%), Gaps = 4/58 (6%)

Query: 2  QQNNYIEAEDAYRRALSIAPDN-NKMCNLGICLMKQGRIGEAKETLRRV---KPAVAD 55
          Q  ++  AE    +     PDN   +  L     +  R+  +           P +A+
Sbjct: 11 QAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAE 68

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 40.6 bits (96), Expect = 5e-04
 Identities = 11/37 (29%), Positives = 17/37 (45%), Gaps = 1/37 (2%)

Query: 2   QQNNYIEAEDAYRRALSIAPDN-NKMCNLGICLMKQG 37
           QQ    EA   Y+ A+ I+P   +   N+G  L +  
Sbjct: 351 QQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQ 387

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 48.8 bits (117), Expect = 9e-07
 Identities = 15/97 (15%), Positives = 34/97 (35%), Gaps = 8/97 (8%)

Query: 1   MQQNNYIEAEDAYRRALSIAPDNNK-MCNLGICLMKQGRIGEAKETLRRVKPAVADGPRG 59
           +       A     + +++  D        G  L+KQG++ EA++  ++    +   P  
Sbjct: 48  LAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLLKQGKLDEAEDDFKK---VLKSNP-- 102

Query: 60  VDSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFD 96
             S  +  E   Q++K  E + +            + 
Sbjct: 103 --SEQEEKEAESQLVKADEMQRLRSQALDAFDGADYT 137

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 44.6 bits (106), Expect = 2e-05
 Identities = 8/50 (16%), Positives = 18/50 (36%), Gaps = 1/50 (2%)

Query: 1   MQQNNYIEAEDAYRRALSIAPDNNKM-CNLGICLMKQGRIGEAKETLRRV 49
               +Y  A     + L +   + ++      C +K+G   +A   L+  
Sbjct: 131 FDGADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAA 180

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 44.2 bits (105), Expect = 3e-05
 Identities = 8/49 (16%), Positives = 15/49 (30%), Gaps = 5/49 (10%)

Query: 1   MQQNNYIEAEDAYRRALSIAPDNNKM-----CNLGICLMKQGRIGEAKE 44
           ++   Y +A   Y   +   P   +        +  C  K  +  EA  
Sbjct: 245 IRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIR 293

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 43.8 bits (104), Expect = 4e-05
 Identities = 6/50 (12%), Positives = 16/50 (32%), Gaps = 1/50 (2%)

Query: 1   MQQNNYIEAEDAYRRALSIAPDN-NKMCNLGICLMKQGRIGEAKETLRRV 49
           +++    +A    + A  +  DN      +     + G    +   +R  
Sbjct: 165 IKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVREC 214

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 43.8 bits (104), Expect = 4e-05
 Identities = 13/82 (15%), Positives = 26/82 (31%), Gaps = 11/82 (13%)

Query: 1   MQQNNYIEAEDAYRRALSIAPDNNK-MCNLGICLMKQGRIGEAKETLRRV---KPAVADG 56
            +    +EA       L + PDN   + +     + +    EA +               
Sbjct: 283 SKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQ- 341

Query: 57  PRGVDSHLKAYERAQQMLKDLE 78
                   +  E+AQ++LK  +
Sbjct: 342 ------IREGLEKAQRLLKQSQ 357

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 41.9 bits (99), Expect = 2e-04
 Identities = 9/50 (18%), Positives = 16/50 (32%), Gaps = 1/50 (2%)

Query: 1  MQQNNYIEAEDAYRRALSIAPDNNKM-CNLGICLMKQGRIGEAKETLRRV 49
          +      +A   +  A+   PDN           +  G+   A   L +V
Sbjct: 14 LAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKV 63

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score = 48.5 bits (116), Expect = 1e-06
 Identities = 15/48 (31%), Positives = 21/48 (43%), Gaps = 1/48 (2%)

Query: 2   QQNNYIEAEDAYRRALSIAPDNNK-MCNLGICLMKQGRIGEAKETLRR 48
           Q  N+  A +A+   L + P  N    N GI L   GR   A++ L  
Sbjct: 89  QAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLA 136

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score = 44.2 bits (105), Expect = 2e-05
 Identities = 7/49 (14%), Positives = 15/49 (30%), Gaps = 1/49 (2%)

Query: 2   QQNNYIEAEDAYRRALSIAPDNNKM-CNLGICLMKQGRIGEAKETLRRV 49
           +Q      +       S+A   ++    LG   +  G +  A    +  
Sbjct: 193 EQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLA 241

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score = 43.1 bits (102), Expect = 6e-05
 Identities = 14/49 (28%), Positives = 21/49 (42%), Gaps = 1/49 (2%)

Query: 2   QQNNYIEAEDAYRRALSIAPDNNKM-CNLGICLMKQGRIGEAKETLRRV 49
                  A + + +AL+I PD  ++   LGI L + G    A E    V
Sbjct: 55  SLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSV 103

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score = 39.6 bits (93), Expect = 7e-04
 Identities = 5/44 (11%), Positives = 13/44 (29%), Gaps = 1/44 (2%)

Query: 2   QQNNYIEAEDAYRRALSIAPDNNKM-CNLGICLMKQGRIGEAKE 44
              +   A   ++ A++    N        + L   G+  +   
Sbjct: 227 SLGDLDSATALFKLAVANNVHNFVEHRYALLELSLLGQDQDDLA 270

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score = 47.1 bits (113), Expect = 2e-06
 Identities = 10/48 (20%), Positives = 18/48 (37%), Gaps = 1/48 (2%)

Query: 2  QQNNYIEAEDAYRRALSIAPDNNKM-CNLGICLMKQGRIGEAKETLRR 48
          +   Y +A     +       +  +  +LGI  +K G +    E L R
Sbjct: 20 KAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLER 67

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score = 46.7 bits (112), Expect = 2e-06
 Identities = 11/48 (22%), Positives = 22/48 (45%), Gaps = 1/48 (2%)

Query: 2   QQNNYIEAEDAYRRALSIAPDNNKM-CNLGICLMKQGRIGEAKETLRR 48
               + EA D+++ AL + P+  K+   +     + GR  EA    ++
Sbjct: 122 NLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKK 169

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score = 46.7 bits (112), Expect = 2e-06
 Identities = 12/48 (25%), Positives = 18/48 (37%), Gaps = 1/48 (2%)

Query: 2   QQNNYIEAEDAYRRALSIAPDNNKM-CNLGICLMKQGRIGEAKETLRR 48
           Q   Y  A     +     P N  +   LG+ L   GR  EA ++ + 
Sbjct: 88  QVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKI 135

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score = 46.3 bits (111), Expect = 3e-06
 Identities = 12/49 (24%), Positives = 21/49 (42%), Gaps = 1/49 (2%)

Query: 2   QQNNYIEAEDAYRRALSIAPDNNK-MCNLGICLMKQGRIGEAKETLRRV 49
           +        +   R+L+ APDN K    LG+  ++  +   A   L +V
Sbjct: 54  KTGAVDRGTELLERSLADAPDNVKVATVLGLTYVQVQKYDLAVPLLIKV 102

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568

 Score = 47.9 bits (114), Expect = 2e-06
 Identities = 9/78 (11%), Positives = 21/78 (26%), Gaps = 4/78 (5%)

Query: 5  NYIEAEDAYRRALSIAPDNNK-MCNLGICLMKQGRIGEAKETLRRV---KPAVADGPRGV 60
          +        R A+   P +      L    +  G     +  ++R     P   +    +
Sbjct: 4  DGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARL 63

Query: 61 DSHLKAYERAQQMLKDLE 78
                 +R  +    L+
Sbjct: 64 GRVRWTQQRHAEAAVLLQ 81

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568

 Score = 47.9 bits (114), Expect = 3e-06
 Identities = 13/65 (20%), Positives = 19/65 (29%), Gaps = 1/65 (1%)

Query: 1   MQQNNYIEAEDAYRRALSIAPDNNK-MCNLGICLMKQGRIGEAKETLRRVKPAVADGPRG 59
                   A  AY RA  + P+       L     +            +V+ AVA G   
Sbjct: 102 EDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGVGA 161

Query: 60  VDSHL 64
           V+   
Sbjct: 162 VEPFA 166

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568

 Score = 46.8 bits (111), Expect = 6e-06
 Identities = 20/102 (19%), Positives = 32/102 (31%), Gaps = 20/102 (19%)

Query: 1   MQQNNYIEAEDAYRRALSIAPDNNK-MCNLGICLMKQGRIGEAKETLRRVKPAVADGPRG 59
           +   +    E A +R L++ P + + +  LG     Q R  EA   L++   A    P  
Sbjct: 34  LGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQQ---ASDAAPEH 90

Query: 60  VDSH----------------LKAYERAQQMLKDLESEMMNKG 85
                                 AY RA Q+L +         
Sbjct: 91  PGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLL 132

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 46.7 bits (112), Expect = 3e-06
 Identities = 10/49 (20%), Positives = 20/49 (40%), Gaps = 1/49 (2%)

Query: 2   QQNNYIEAEDAYRRALSIAPDNNKM-CNLGICLMKQGRIGEAKETLRRV 49
           +      A    +RA+ +  ++ +     G+CL  +G + EA      V
Sbjct: 137 KLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEALSQFAAV 185

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 44.8 bits (107), Expect = 1e-05
 Identities = 8/48 (16%), Positives = 15/48 (31%), Gaps = 1/48 (2%)

Query: 2   QQNNYIEAEDAYRRALSIAPDNNK-MCNLGICLMKQGRIGEAKETLRR 48
            +    EA   +       P +     N G+    +    +A E L +
Sbjct: 171 NEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDK 218

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 43.7 bits (104), Expect = 3e-05
 Identities = 14/48 (29%), Positives = 23/48 (47%), Gaps = 1/48 (2%)

Query: 2   QQNNYIEAEDAYRRALSIAPDN-NKMCNLGICLMKQGRIGEAKETLRR 48
            +  Y EA+D + +AL    +N +    LG  L+K  +   A   L+R
Sbjct: 103 VKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQR 150

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 43.7 bits (104), Expect = 3e-05
 Identities = 7/50 (14%), Positives = 18/50 (36%), Gaps = 1/50 (2%)

Query: 1  MQQNNYIEAEDAYRRALSIAPDNNKM-CNLGICLMKQGRIGEAKETLRRV 49
           +  +Y +A +A+ +A+    ++     N    L     +  A     + 
Sbjct: 34 SEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKA 83

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 42.9 bits (102), Expect = 6e-05
 Identities = 9/48 (18%), Positives = 15/48 (31%), Gaps = 1/48 (2%)

Query: 2   QQNNYIEAEDAYRRALSIAPDNNKM-CNLGICLMKQGRIGEAKETLRR 48
             N    A   Y +AL +           G   + +    EAK+   +
Sbjct: 69  SVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEK 116

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score = 46.3 bits (110), Expect = 4e-06
 Identities = 10/50 (20%), Positives = 21/50 (42%), Gaps = 1/50 (2%)

Query: 1   MQQNNYIEAEDAYRRALSIAPDNNK-MCNLGICLMKQGRIGEAKETLRRV 49
            +  NY +A   Y+  L  AP+N   +       + +G+  +A     ++
Sbjct: 65  KKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKI 114

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score = 40.5 bits (95), Expect = 3e-04
 Identities = 7/49 (14%), Positives = 17/49 (34%), Gaps = 1/49 (2%)

Query: 2   QQNNYIEAEDAYRRALSIAPDNNKM-CNLGICLMKQGRIGEAKETLRRV 49
                 +  +   + LS            G+  +   R  +A+ +L++V
Sbjct: 135 TAEQEKKKLETDYKKLSSPTKMQYARYRDGLSKLFTTRYEKARNSLQKV 183

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A Length = 91

 Score = 43.5 bits (104), Expect = 4e-06
 Identities = 18/44 (40%), Positives = 26/44 (59%), Gaps = 1/44 (2%)

Query: 2  QQNNYIEAEDAYRRALSIAPDNNK-MCNLGICLMKQGRIGEAKE 44
          +Q +Y EA + Y++AL + P+N +   NLG    KQG   EA E
Sbjct: 21 KQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIE 64

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A Length = 91

 Score = 38.9 bits (92), Expect = 2e-04
 Identities = 15/37 (40%), Positives = 23/37 (62%), Gaps = 1/37 (2%)

Query: 2  QQNNYIEAEDAYRRALSIAPDNNK-MCNLGICLMKQG 37
          +Q +Y EA + Y++AL + P+N +   NLG    KQG
Sbjct: 55 KQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 91

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Length = 125

 Score = 44.3 bits (106), Expect = 4e-06
 Identities = 18/48 (37%), Positives = 28/48 (58%), Gaps = 1/48 (2%)

Query: 2  QQNNYIEAEDAYRRALSIAPDNNK-MCNLGICLMKQGRIGEAKETLRR 48
          +Q +Y EA + Y++AL + P+N +   NLG    KQG   EA E  ++
Sbjct: 21 KQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQK 68

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Length = 125

 Score = 44.3 bits (106), Expect = 4e-06
 Identities = 18/44 (40%), Positives = 26/44 (59%), Gaps = 1/44 (2%)

Query: 2  QQNNYIEAEDAYRRALSIAPDNNK-MCNLGICLMKQGRIGEAKE 44
          +Q +Y EA + Y++AL + P+N +   NLG    KQG   EA E
Sbjct: 55 KQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIE 98

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Length = 125

 Score = 39.3 bits (93), Expect = 3e-04
 Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 1/36 (2%)

Query: 3   QNNYIEAEDAYRRALSIAPDNNKM-CNLGICLMKQG 37
           Q +Y EA + Y++AL + P+N +   NLG    KQG
Sbjct: 90  QGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} Length = 127

 Score = 44.2 bits (105), Expect = 5e-06
 Identities = 18/85 (21%), Positives = 31/85 (36%), Gaps = 10/85 (11%)

Query: 1   MQQNNYIEAEDAYRRALSIAPDNNK-MCNLGICLMKQGRIGEAKETLRRVKPAVADGPRG 59
            +Q ++ +A   Y +A+ + P N     N      ++ +  E  +   +   AV  G   
Sbjct: 19  YKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEK---AVEVGRET 75

Query: 60  VDSHL---KAYER---AQQMLKDLE 78
              +    KA  R   A Q   DL 
Sbjct: 76  RADYKLIAKAMSRAGNAFQKQNDLS 100

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} Length = 127

 Score = 38.8 bits (91), Expect = 4e-04
 Identities = 8/57 (14%), Positives = 17/57 (29%), Gaps = 8/57 (14%)

Query: 1   MQQNNYIEAEDAYRRALSIAPDNNK--------MCNLGICLMKQGRIGEAKETLRRV 49
            ++  + E      +A+ +  +           M   G    KQ  +  A +   R 
Sbjct: 53  FEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRS 109

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Length = 177

 Score = 44.9 bits (106), Expect = 6e-06
 Identities = 9/82 (10%), Positives = 29/82 (35%), Gaps = 6/82 (7%)

Query: 2   QQNNYIEAEDAYRRALSIAPDNNK-MCNLGICLMKQGRIGEAKETLRRVKPAVADGPRGV 60
            Q+   +      +AL++  +    +  L      Q    +A E  ++    +      +
Sbjct: 93  SQHMTAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQK---VMDLNSPRI 149

Query: 61  DSH--LKAYERAQQMLKDLESE 80
           +    +++   A+ + +  + E
Sbjct: 150 NRTQLVESINMAKLLQRRSDLE 171

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Length = 177

 Score = 41.0 bits (96), Expect = 2e-04
 Identities = 12/53 (22%), Positives = 22/53 (41%), Gaps = 4/53 (7%)

Query: 1   MQQNNYIEAEDAYRRALSIAPDN-NKMCNLGICLM---KQGRIGEAKETLRRV 49
           + QN+Y  +  AYR+AL +  +N      L   L     Q    + +  + + 
Sbjct: 55  LWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQTRAMIDKA 107

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136

 Score = 43.9 bits (105), Expect = 7e-06
 Identities = 17/48 (35%), Positives = 27/48 (56%), Gaps = 1/48 (2%)

Query: 2   QQNNYIEAEDAYRRALSIAPDNNKM-CNLGICLMKQGRIGEAKETLRR 48
           +Q +Y EA + Y++AL + P + +   NLG    KQG   EA E  ++
Sbjct: 81  KQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQK 128

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136

 Score = 43.9 bits (105), Expect = 9e-06
 Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 1/44 (2%)

Query: 2  QQNNYIEAEDAYRRALSIAPDNNK-MCNLGICLMKQGRIGEAKE 44
          +Q +Y EA + Y++AL + P + +   NLG    KQG   EA E
Sbjct: 47 KQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIE 90

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136

 Score = 43.1 bits (103), Expect = 2e-05
 Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 1/44 (2%)

Query: 2  QQNNYIEAEDAYRRALSIAPDNNK-MCNLGICLMKQGRIGEAKE 44
          +Q +Y EA + Y++AL + P + +   NLG    KQG   EA E
Sbjct: 13 KQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIE 56

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 46.1 bits (109), Expect = 9e-06
 Identities = 9/50 (18%), Positives = 17/50 (34%), Gaps = 1/50 (2%)

Query: 1   MQQNNYIEAEDAYRRALSIAPDNNK-MCNLGICLMKQGRIGEAKETLRRV 49
            +     E E     AL  AP     + +      ++    +A E L++ 
Sbjct: 224 EEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKA 273

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 40.3 bits (94), Expect = 6e-04
 Identities = 10/64 (15%), Positives = 20/64 (31%), Gaps = 1/64 (1%)

Query: 1   MQQNNYIEAEDAYRRALSIAPDN-NKMCNLGICLMKQGRIGEAKETLRRVKPAVADGPRG 59
              N    A+  + +AL   P N      L I   +      ++  +  ++ A+   P  
Sbjct: 149 CGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDN 208

Query: 60  VDSH 63
               
Sbjct: 209 QYLK 212

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474

 Score = 46.2 bits (109), Expect = 1e-05
 Identities = 10/49 (20%), Positives = 18/49 (36%), Gaps = 1/49 (2%)

Query: 2   QQNNYIEAEDAYRRALSIAPDNNKM-CNLGICLMKQGRIGEAKETLRRV 49
             +   EAE    +A+ + P+  +    LG    K+G +  A       
Sbjct: 115 TPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGA 163

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474

 Score = 45.0 bits (106), Expect = 2e-05
 Identities = 10/51 (19%), Positives = 21/51 (41%), Gaps = 1/51 (1%)

Query: 2   QQNNYIEAEDAYRRALSIAPDNNKM-CNLGICLMKQGRIGEAKETLRRVKP 51
            + +Y EA + + +A ++ P   +        L    R+    E+  + KP
Sbjct: 270 YEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGKTKP 320

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474

 Score = 44.2 bits (104), Expect = 3e-05
 Identities = 10/55 (18%), Positives = 20/55 (36%), Gaps = 1/55 (1%)

Query: 1   MQQNNYIEAEDAYRRALSIAPDNNKMCNLGICLMKQGRIGEAKETLRRVKPAVAD 55
            ++ +   A   +  AL+   +   + NL + L +        E  R V  +V  
Sbjct: 148 WKKGDVTSAHTCFSGALTHCKNKVSLQNLSMVLRQLQT-DSGDEHSRHVMDSVRQ 201

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} Length = 176

 Score = 44.2 bits (104), Expect = 1e-05
 Identities = 14/85 (16%), Positives = 29/85 (34%), Gaps = 3/85 (3%)

Query: 1  MQQNNYIEAEDAYRRALSIAPDNNK-MCNLGICLMKQGRIGEAKETLRRVKPAVADGPRG 59
          +QQ  + +A +  +                  CL++  +   A+E L  +     D    
Sbjct: 17 LQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQDNS-- 74

Query: 60 VDSHLKAYERAQQMLKDLESEMMNK 84
            S +   E  QQ  +  E + + +
Sbjct: 75 YKSLIAKLELHQQAAESPELKRLEQ 99

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 45.8 bits (109), Expect = 1e-05
 Identities = 10/50 (20%), Positives = 21/50 (42%), Gaps = 1/50 (2%)

Query: 1   MQQNNYIEAEDAYRRALSIAPDNNK-MCNLGICLMKQGRIGEAKETLRRV 49
           +       A     + + +  D        G  L+KQG++ EA++  ++V
Sbjct: 71  LAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKV 120

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 44.3 bits (105), Expect = 3e-05
 Identities = 15/85 (17%), Positives = 28/85 (32%), Gaps = 5/85 (5%)

Query: 1   MQQNNYIEAEDAYRRALSIAPDNNK-MCNLGICLMKQGRIGEAKETLRRVKPAVADGPRG 59
            +    +EA       L + PDN   + +     + +    EA +       A       
Sbjct: 306 SKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYET---AQEHNEND 362

Query: 60  VDSHLKAYERAQQMLKDLESEMMNK 84
                +  E+AQ++LK  +     K
Sbjct: 363 QQIR-EGLEKAQRLLKQSQKRDYYK 386

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 43.1 bits (102), Expect = 8e-05
 Identities = 8/50 (16%), Positives = 18/50 (36%), Gaps = 1/50 (2%)

Query: 1   MQQNNYIEAEDAYRRALSIAPDNNKM-CNLGICLMKQGRIGEAKETLRRV 49
               +Y  A     + L +   + ++      C +K+G   +A   L+  
Sbjct: 154 FGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAA 203

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 42.7 bits (101), Expect = 1e-04
 Identities = 8/49 (16%), Positives = 15/49 (30%), Gaps = 5/49 (10%)

Query: 1   MQQNNYIEAEDAYRRALSIAPDNNKM-----CNLGICLMKQGRIGEAKE 44
           ++   Y +A   Y   +   P   +        +  C  K  +  EA  
Sbjct: 268 IRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIR 316

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 41.2 bits (97), Expect = 3e-04
 Identities = 6/50 (12%), Positives = 17/50 (34%), Gaps = 1/50 (2%)

Query: 1   MQQNNYIEAEDAYRRALSIAPDNNK-MCNLGICLMKQGRIGEAKETLRRV 49
           +++    +A    + A  +  DN +    +     + G    +   +R  
Sbjct: 188 IKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVREC 237

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 45.9 bits (109), Expect = 1e-05
 Identities = 20/99 (20%), Positives = 41/99 (41%), Gaps = 14/99 (14%)

Query: 1   MQQNNYIEAEDAYRRALSIAPDNNK-MCNLGICLMKQGRIGEAKETLRRV---KPAVADG 56
               +Y  A++ +++A S+ P+N      L   L KQG+  E++          P + + 
Sbjct: 321 FILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEV 380

Query: 57  P--RGV--------DSHLKAYERAQQMLKDLESEMMNKG 85
           P             D+ +K Y+ A+++ +  E   +  G
Sbjct: 381 PTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIG 419

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 44.7 bits (106), Expect = 3e-05
 Identities = 15/103 (14%), Positives = 34/103 (33%), Gaps = 3/103 (2%)

Query: 2   QQNNYIEAEDAYRRALSIAPDNNK-MCNLGICLMKQGRIGEAKETLR--RVKPAVADGPR 58
              +  +  +   +AL I PD++K +          G   +A   L    +         
Sbjct: 71  STGDLEKVIEFTTKALEIKPDHSKALLRRASANESLGNFTDAMFDLSVLSLNGDFDGASI 130

Query: 59  GVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGS 101
                    ++A ++L +  S+   +G   +  +    +F G 
Sbjct: 131 EPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGI 173

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 43.9 bits (104), Expect = 5e-05
 Identities = 8/44 (18%), Positives = 20/44 (45%)

Query: 1   MQQNNYIEAEDAYRRALSIAPDNNKMCNLGICLMKQGRIGEAKE 44
             +NN ++A+   + ++++ P  N    L + L  +    E  +
Sbjct: 254 FLKNNLLDAQVLLQESINLHPTPNSYIFLALTLADKENSQEFFK 297

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 43.9 bits (104), Expect = 5e-05
 Identities = 8/49 (16%), Positives = 18/49 (36%), Gaps = 1/49 (2%)

Query: 1   MQQNNYIEAEDAYRRALSIAPDNNKM-CNLGICLMKQGRIGEAKETLRR 48
           + +  +  A     +A  + P + +    L    ++  +I EA E    
Sbjct: 439 LDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFED 487

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 41.6 bits (98), Expect = 3e-04
 Identities = 8/49 (16%), Positives = 18/49 (36%), Gaps = 1/49 (2%)

Query: 1   MQQNNYIEAEDAYRRALSIAPDNNK-MCNLGICLMKQGRIGEAKETLRR 48
             + N  E    +++A+ + P+      + G           AKE  ++
Sbjct: 287 ADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQK 335

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 41.2 bits (97), Expect = 3e-04
 Identities = 10/44 (22%), Positives = 19/44 (43%), Gaps = 1/44 (2%)

Query: 2  QQNNYIEAEDAYRRALSIAPDNNKM-CNLGICLMKQGRIGEAKE 44
             N+ EA   Y+ A+ + P+      N+  C +  G + +  E
Sbjct: 37 TAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIE 80

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112

 Score = 41.3 bits (98), Expect = 4e-05
 Identities = 12/42 (28%), Positives = 19/42 (45%), Gaps = 1/42 (2%)

Query: 2  QQNNYIEAEDAYRRALSIAPDNNK-MCNLGICLMKQGRIGEA 42
             NY E+ D + +A+ + P+ +K     G  L    R  EA
Sbjct: 18 DAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEA 59

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112

 Score = 40.1 bits (95), Expect = 9e-05
 Identities = 8/52 (15%), Positives = 11/52 (21%), Gaps = 3/52 (5%)

Query: 1   MQQNNYIEAEDAYRRALSIAPDNNKM---CNLGICLMKQGRIGEAKETLRRV 49
                Y EA D Y   +++  D             L          E     
Sbjct: 51  YNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADALRYIEGKEVEAEIAEAR 102

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} Length = 129

 Score = 40.8 bits (96), Expect = 8e-05
 Identities = 15/52 (28%), Positives = 28/52 (53%), Gaps = 4/52 (7%)

Query: 2   QQNNYIEAEDAYRRALSIAPDNNK----MCNLGICLMKQGRIGEAKETLRRV 49
              N+  AE  +R  +S  P ++K    +  LG+    +G+  EA++TL++V
Sbjct: 51  ATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQYGEGKNTEAQQTLQQV 102

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} Length = 99

 Score = 39.6 bits (93), Expect = 1e-04
 Identities = 9/46 (19%), Positives = 13/46 (28%), Gaps = 2/46 (4%)

Query: 1  MQQNNYIEAEDAYRRALSIAPDNNKMC--NLGICLMKQGRIGEAKE 44
          + Q +   A  A    L   P         +G    K G   +A  
Sbjct: 11 INQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALN 56

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 42.8 bits (101), Expect = 1e-04
 Identities = 11/79 (13%), Positives = 30/79 (37%), Gaps = 8/79 (10%)

Query: 2   QQNNYIEAEDAYRRALSIAPDNNKMCNLGICLMKQGRIGEAKETLRRVKPAVADGPRGVD 61
            +N+ + A +  ++A+ + P  N    + + +  +    E      +   A+        
Sbjct: 249 LKNDPLGAHEDIKKAIELFPRVNSYIYMALIMADRNDSTEYYNYFDK---ALKLDSNNSS 305

Query: 62  SHLKAYERAQ--QMLKDLE 78
            +   Y R Q   +L++ +
Sbjct: 306 VY---YHRGQMNFILQNYD 321

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 42.0 bits (99), Expect = 2e-04
 Identities = 7/50 (14%), Positives = 17/50 (34%), Gaps = 1/50 (2%)

Query: 1   MQQNNYIEAEDAYRRALSIAPDNNK-MCNLGICLMKQGRIGEAKETLRRV 49
               NY +A   + +A  + P+N      L     ++ +  + +      
Sbjct: 315 FILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEA 364

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 42.4 bits (100), Expect = 1e-04
 Identities = 9/75 (12%), Positives = 15/75 (20%), Gaps = 7/75 (9%)

Query: 2   QQNNYIEAEDAYRRALSIAPDNNK-MCNLGICLMKQGRIGEAKETLRRV---KP---AVA 54
                        +A  + P     + + G        I                   VA
Sbjct: 424 ALETVQRLLPVLCQAHGLTPQQVVAIASNGGGRPALESIVAQLSRPDPALAALTNDHLVA 483

Query: 55  DGPRGVDSHLKAYER 69
               G    L A ++
Sbjct: 484 LACLGGRPALDAVKK 498

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 42.4 bits (100), Expect = 1e-04
 Identities = 11/110 (10%), Positives = 23/110 (20%), Gaps = 14/110 (12%)

Query: 2   QQNNYIEAEDAYRRALSIAPDN-NKMCNLGICLMKQGRIGEAKETLRRV---KP--AVAD 55
                        +A  + P     + +          +      L +     P   VA 
Sbjct: 254 ALETVQRLLPVLCQAHGLTPQQVVAIASNSGGKQALETVQRLLPVLCQAHGLTPQQVVAI 313

Query: 56  GPRG--------VDSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDA 97
              G        V   L    +A  +       + +  G +     +   
Sbjct: 314 ASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQALETVQRL 363

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 42.0 bits (99), Expect = 2e-04
 Identities = 13/110 (11%), Positives = 25/110 (22%), Gaps = 14/110 (12%)

Query: 2   QQNNYIEAEDAYRRALSIAPDN-NKMCNLGICLMKQGRIGEAKETLRRV---KP--AVAD 55
                        +A  + P+    + + G        +      L +     P   VA 
Sbjct: 356 ALETVQRLLPVLCQAHGLTPEQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPEQVVAI 415

Query: 56  GPRG--------VDSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDA 97
                       V   L    +A  +       + + GG R     +   
Sbjct: 416 ASHDGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGRPALESIVAQ 465

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 41.7 bits (98), Expect = 2e-04
 Identities = 12/101 (11%), Positives = 24/101 (23%), Gaps = 14/101 (13%)

Query: 2   QQNNYIEAEDAYRRALSIAPDN-NKMCNLGICLMKQGRIGEAKETLRRV---KP--AVAD 55
                        +A  + P+    + +          +      L +     P   VA 
Sbjct: 390 ALETVQRLLPVLCQAHGLTPEQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPQQVVAI 449

Query: 56  GPRG--------VDSHLKAYERAQQMLKDLESEMMNKGGDR 88
              G        + + L   + A   L +     +   G R
Sbjct: 450 ASNGGGRPALESIVAQLSRPDPALAALTNDHLVALACLGGR 490

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 40.5 bits (95), Expect = 6e-04
 Identities = 3/49 (6%), Positives = 9/49 (18%), Gaps = 1/49 (2%)

Query: 2   QQNNYIEAEDAYRRALSIAPDNNK-MCNLGICLMKQGRIGEAKETLRRV 49
                        +A  + P     + +          +      L + 
Sbjct: 322 ALETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQALETVQRLLPVLCQA 370

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 40.1 bits (94), Expect = 7e-04
 Identities = 12/110 (10%), Positives = 25/110 (22%), Gaps = 14/110 (12%)

Query: 2   QQNNYIEAEDAYRRALSIAPDNNK-MCNLGICLMKQGRIGEAKETLRRV---KP--AVAD 55
                        +A  + P     + + G        +      L +     P   VA 
Sbjct: 288 ALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAI 347

Query: 56  GPRG--------VDSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDA 97
                       V   L    +A  +  +    + + GG +     +   
Sbjct: 348 ASHDGGKQALETVQRLLPVLCQAHGLTPEQVVAIASNGGGKQALETVQRL 397

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 41.1 bits (97), Expect = 2e-04
 Identities = 7/49 (14%), Positives = 15/49 (30%), Gaps = 1/49 (2%)

Query: 2   QQNNYIEAEDAYRRALSIAPDNNK-MCNLGICLMKQGRIGEAKETLRRV 49
            + N+  A     + +     + K    LG          +A  +  +V
Sbjct: 120 NKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSFVKV 168

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 39.6 bits (93), Expect = 9e-04
 Identities = 8/57 (14%), Positives = 22/57 (38%), Gaps = 1/57 (1%)

Query: 2  QQNNYIEAEDAYRRALSIAPDNNKMC-NLGICLMKQGRIGEAKETLRRVKPAVADGP 57
          + NNY EA + + +  +   ++  +     +C  +  +   A++ +      V    
Sbjct: 15 KNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATK 71

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A Length = 131

 Score = 39.6 bits (93), Expect = 2e-04
 Identities = 14/85 (16%), Positives = 32/85 (37%), Gaps = 10/85 (11%)

Query: 1  MQQNNYIEAEDAYRRALSIAPDNNK-MCNLGICLMKQGRIGEAKETLRRVKPAVADGPRG 59
           ++ ++  A   Y +A  + P N   + N      ++G   + +E   +   A+  G   
Sbjct: 15 YKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEK---AIEVGREN 71

Query: 60 VDSHL---KAYER---AQQMLKDLE 78
           + +    KAY R   +    +  +
Sbjct: 72 REDYRQIAKAYARIGNSYFKEEKYK 96

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 40.6 bits (96), Expect = 3e-04
 Identities = 10/44 (22%), Positives = 18/44 (40%), Gaps = 1/44 (2%)

Query: 2   QQNNYIEAEDAYRRALSIAPDNNK-MCNLGICLMKQGRIGEAKE 44
            ++++  A  AY   +  AP++ +   N    L K     EA  
Sbjct: 151 TKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIA 194

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} Length = 111

 Score = 38.4 bits (90), Expect = 4e-04
 Identities = 12/45 (26%), Positives = 20/45 (44%), Gaps = 1/45 (2%)

Query: 1  MQQNNYIEAEDAYRRALSIAPDNNKM-CNLGICLMKQGRIGEAKE 44
           +Q  Y EA   Y + ++  P N     N  + L+K G   +A +
Sbjct: 15 FKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQ 59

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291

 Score = 40.1 bits (93), Expect = 5e-04
 Identities = 16/74 (21%), Positives = 28/74 (37%), Gaps = 4/74 (5%)

Query: 1   MQQNNYIEAEDAYRRALSIAPDNNK-MCNLGICLMKQGRIGEA-KETLRRVKPAVADGPR 58
           M Q  +  AE   + AL     + + + NL +     G+  E     L ++K A    P 
Sbjct: 211 MAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPF 270

Query: 59  GVDSHLKA--YERA 70
             +   K   ++R 
Sbjct: 271 IKEYRAKENDFDRL 284

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} Length = 307

 Score = 39.9 bits (93), Expect = 8e-04
 Identities = 6/54 (11%), Positives = 19/54 (35%), Gaps = 7/54 (12%)

Query: 2   QQNNYIEAEDAYRRALSIAPDNNK-------MCNLGICLMKQGRIGEAKETLRR 48
           +Q  + EA  + ++  S+  +               +  + +     A++ +R 
Sbjct: 167 RQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRE 220

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	338
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.73
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.72
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.68
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	99.65
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	99.63
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	99.63
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.63
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.62
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.62
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	99.61
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	99.6
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	99.58
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.57
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.57
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.56
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.55
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	99.54
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.53
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.53
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.53
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	99.52
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.52
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	99.52
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	99.51
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	99.51
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.51
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	99.51
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	99.51
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	99.5
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.5
4g1t_A	472	Interferon-induced protein with tetratricopeptide	99.5
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	99.49
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.49
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	99.49
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	99.49
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	99.49
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	99.49
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.49
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.48
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	99.48
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.48
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.48
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.47
4g1t_A	472	Interferon-induced protein with tetratricopeptide	99.47
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	99.47
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.47
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.46
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.46
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.45
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	99.45
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	99.45
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.45
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	99.45
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.43
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	99.43
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	99.43
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.43
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.43
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	99.43
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.42
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.42
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	99.41
3k9i_A	117	BH0479 protein; putative protein binding protein,	99.41
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	99.4
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	99.4
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	99.38
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	99.38
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	99.37
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.37
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.37
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	99.37
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	99.37
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.36
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.36
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	99.36
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	99.35
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	99.35
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.35
2gw1_A	514	Mitochondrial precursor proteins import receptor;	99.35
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	99.34
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	99.32
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	99.32
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	99.32
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	99.31
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	99.31
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	99.3
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	99.3
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	99.3
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	99.29
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	99.29
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	99.29
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	99.29
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	99.27
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	99.27
2gw1_A	514	Mitochondrial precursor proteins import receptor;	99.27
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.26
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	99.26
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	99.24
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	99.24
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	99.23
2kat_A	115	Uncharacterized protein; NESG, structure, structur	99.23
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	99.23
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	99.22
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	99.19
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	99.19
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	99.19
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	99.17
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	99.17
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	99.16
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	99.15
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	99.15
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	99.14
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	99.12
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	99.1
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	99.08
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	99.06
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	99.06
2l6j_A	111	TPR repeat-containing protein associated with HSP;	99.05
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	99.05
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	99.04
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	99.04
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	99.03
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	99.02
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	99.02
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	99.02
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	99.0
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	98.99
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	98.99
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	98.99
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	98.99
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	98.97
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	98.96
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	98.95
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	98.95
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	98.94
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	98.94
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	98.94
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	98.93
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	98.93
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	98.92
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	98.9
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	98.89
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	98.89
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	98.89
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	98.89
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	98.88
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	98.87
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	98.87
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	98.87
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	98.86
2l6j_A	111	TPR repeat-containing protein associated with HSP;	98.84
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	98.84
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	98.83
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	98.82
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	98.81
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	98.8
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	98.8
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	98.8
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	98.79
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	98.79
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	98.78
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	98.77
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	98.77
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	98.77
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	98.76
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	98.76
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	98.76
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	98.75
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	98.74
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	98.74
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	98.72
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	98.72
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	98.71
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	98.7
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	98.7
3k9i_A	117	BH0479 protein; putative protein binding protein,	98.66
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	98.65
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	98.63
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	98.63
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	98.61
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	98.59
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	98.59
1klx_A	138	Cysteine rich protein B; structural genomics, heli	98.59
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	98.59
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	98.58
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	98.55
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	98.54
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	98.53
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	98.52
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	98.52
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	98.52
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	98.49
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	98.43
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	98.42
2kat_A	115	Uncharacterized protein; NESG, structure, structur	98.39
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	98.32
1pc2_A	152	Mitochondria fission protein; unknown function; NM	98.3
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	98.28
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	98.26
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	98.2
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	98.16
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	98.12
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	98.06
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	98.01
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	97.99
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	97.95
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	97.91
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	97.81
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	97.67
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	97.63
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	97.4
1klx_A	138	Cysteine rich protein B; structural genomics, heli	97.38
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	97.34
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	97.12
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	97.03
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	96.91
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	96.88
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	96.67
1pc2_A	152	Mitochondria fission protein; unknown function; NM	96.41
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	96.31
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	96.21
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	95.34
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	95.13
4h7y_A	161	Dual specificity protein kinase TTK; mitotic check	94.91
2llv_A	71	Heat shock protein STI1; DP domain, alpha helix, c	94.39
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	93.84
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	93.42
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	93.08
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	93.0
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	92.47
1zbp_A	273	Hypothetical protein VPA1032; alpha-beta protein,	92.15
1ya0_A	497	SMG-7 transcript variant 2; alpha-helical repeat,	91.82
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	91.48
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	91.09
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	90.44
3mkq_B	177	Coatomer subunit alpha; beta-propeller, alpha-sole	90.24
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	90.13
1ya0_A	497	SMG-7 transcript variant 2; alpha-helical repeat,	89.7
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	86.53
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	85.67
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	83.56
1zbp_A	273	Hypothetical protein VPA1032; alpha-beta protein,	82.7
3kae_A	242	CDC27, possible protein of nuclear scaffold; tetra	82.34
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	82.21

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.73  E-value=3e-17  Score=139.34  Aligned_cols=140  Identities=16%  Similarity=0.110  Sum_probs=123.2

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcCCHHHHHHHHHhhC---cCCcC----------CCCCHHHHHHHH
Q 019586            2 QQNNYIEAEDAYRRALSIAPDNNKMC-NLGICLMKQGRIGEAKETLRRVK---PAVAD----------GPRGVDSHLKAY   67 (338)
Q Consensus         2 q~g~~eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k~~---p~~~d----------~lg~~deAi~~y   67 (338)
                      ++|+|++|+.+|+++++++|++..++ ++|.+|..+|++++|+..+.++.   |..+.          ..++++.|+..+
T Consensus        17 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~   96 (184)
T 3vtx_A           17 TKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSANFMIDEKQAAIDAL   96 (184)
T ss_dssp             HHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            46999999999999999999999977 99999999999999999999943   44333          278999999999


Q ss_pred             HHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCcccc---cchhhhcCccHHHHHhhhhcccCCCh
Q 019586           68 ERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDHIL---PTTNAIKTRDDFADENIDSNVDVNPI  141 (338)
Q Consensus        68 ekAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~~l---~~l~~~~~~~~~A~e~~~~al~~~P~  141 (338)
                      .+++++.|++..++..+|.+|..+|++++|+.+|+++++++|.++..+   +.+....++.+.|.+.+..++.++|.
T Consensus        97 ~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~  173 (184)
T 3vtx_A           97 QRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEAVKYFKKALEKEEK  173 (184)
T ss_dssp             HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTHH
T ss_pred             HHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHHHHHHHHHHhCCcc
Confidence            999999999999999999999999999999999999999999998733   33466778888888888877776664

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.72  E-value=1.7e-17  Score=147.31  Aligned_cols=161  Identities=14%  Similarity=0.061  Sum_probs=127.1

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcCCHHHHHHHHHh---hCcCCcCC----------C----------
Q 019586            2 QQNNYIEAEDAYRRALSIAPDNNKMC-NLGICLMKQGRIGEAKETLRR---VKPAVADG----------P----------   57 (338)
Q Consensus         2 q~g~~eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k---~~p~~~d~----------l----------   57 (338)
                      +.|++++|+..|+++++++|++..++ ++|.++..+|++++|+..|++   +.|.++..          .          
T Consensus        17 ~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~   96 (217)
T 2pl2_A           17 ALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSEAYVALYRQAEDRERG   96 (217)
T ss_dssp             HTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHTCSSHHHH
T ss_pred             HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhhhhccc
Confidence            47899999999999999999999977 999999999999999999999   45665542          5          


Q ss_pred             -CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCcccc---cchhhhcCccHHHHHhhh
Q 019586           58 -RGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDHIL---PTTNAIKTRDDFADENID  133 (338)
Q Consensus        58 -g~~deAi~~yekAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~~l---~~l~~~~~~~~~A~e~~~  133 (338)
                       |++++|+..|+++++++|+++.+|+++|.+|..+|++++|+.+|+++++++ .++..+   +.+....++.+.|...+.
T Consensus        97 ~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~  175 (217)
T 2pl2_A           97 KGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE-DTPEIRSALAELYLSMGRLDEALAQYA  175 (217)
T ss_dssp             HHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred             ccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc-cchHHHHHHHHHHHHcCCHHHHHHHHH
Confidence             999999999999999999999999999999999999999999999999999 666533   233455666666666655


Q ss_pred             hcccCCChhhhhhhhhhhhcchHHHHHHhHhHHHHhhchhhhhhHhhhhhhhhhhhh
Q 019586          134 SNVDVNPIVLSKHRSVKKLFPTANAIKTQENFADENINANIVVNQTVLAQQRGVQQL  190 (338)
Q Consensus       134 ~al~~~P~~~~K~~~~~kl~~~~~ai~~~~~~~e~y~nlg~~~~~~~~~d~r~~~~~  190 (338)
                      .++                       ...|+..+++.++|.+.    +...+..+++
T Consensus       176 ~al-----------------------~~~P~~~~~~~~la~~~----~~~g~~~~A~  205 (217)
T 2pl2_A          176 KAL-----------------------EQAPKDLDLRVRYASAL----LLKGKAEEAA  205 (217)
T ss_dssp             HHH-----------------------HHSTTCHHHHHHHHHHH----TC--------
T ss_pred             HHH-----------------------HhCCCChHHHHHHHHHH----HHccCHHHHH
Confidence            544                       45566667777777743    3444444443

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.68  E-value=8.5e-17  Score=169.79  Aligned_cols=140  Identities=23%  Similarity=0.246  Sum_probs=123.1

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcCCHHHHHHHHHh---hCcCCcC----------CCCCHHHHHHHH
Q 019586            2 QQNNYIEAEDAYRRALSIAPDNNKMC-NLGICLMKQGRIGEAKETLRR---VKPAVAD----------GPRGVDSHLKAY   67 (338)
Q Consensus         2 q~g~~eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k---~~p~~~d----------~lg~~deAi~~y   67 (338)
                      ++|++++|+.+|++||+++|++..++ |||.+|..+|++++|+.+|++   +.|++++          .+|++++|+.+|
T Consensus        21 ~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nLg~~l~~~g~~~~A~~~~  100 (723)
T 4gyw_A           21 EQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCY  100 (723)
T ss_dssp             HTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            57999999999999999999999988 999999999999999999999   5666655          289999999999


Q ss_pred             HHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCcccccc---hhhhcCccHHHHHhhhhcccCCCh
Q 019586           68 ERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDHILPT---TNAIKTRDDFADENIDSNVDVNPI  141 (338)
Q Consensus        68 ekAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~~l~~---l~~~~~~~~~A~e~~~~al~~~P~  141 (338)
                      ++|++++|+++.+|++||.+|..+|++++|+.+|+++++++|+++..+..   +....++.+.+.+.+...+.+.|.
T Consensus       101 ~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~A~~~~~kal~l~~~  177 (723)
T 4gyw_A          101 TRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVAD  177 (723)
T ss_dssp             HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred             HHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHHHHHHHHHHHHhChh
Confidence            99999999999999999999999999999999999999999999874433   355667777777777666655444

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=99.65  E-value=4.8e-16  Score=127.71  Aligned_cols=92  Identities=17%  Similarity=0.230  Sum_probs=79.0

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcCCHHHHHHHHHhhCcCCcCCCCCHHHHHHHHHHHHHhCCCCHHH
Q 019586            2 QQNNYIEAEDAYRRALSIAPDNNKMC-NLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDLESE   80 (338)
Q Consensus         2 q~g~~eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k~~p~~~d~lg~~deAi~~yekAL~l~Pd~~~a   80 (338)
                      +.|+|++|+.+|++||+++|+++.+| ++|.+|..+|++                     ++|+.+|++||+++|+++.+
T Consensus        25 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~---------------------~~A~~~~~~al~~~p~~~~a   83 (126)
T 4gco_A           25 KKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEF---------------------QRALDDCDTCIRLDSKFIKG   83 (126)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH---------------------HHHHHHHHHHHHHCTTCHHH
T ss_pred             HcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccH---------------------HHHHHHHHHHHHhhhhhhHH
Confidence            45777777777777777777777766 777777777777                     66777777899999999999


Q ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHccCCCCccc
Q 019586           81 MMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDHI  114 (338)
Q Consensus        81 ~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~~  114 (338)
                      |+++|.+|..+|++++|+.+|+++++++|++..+
T Consensus        84 ~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a  117 (126)
T 4gco_A           84 YIRKAACLVAMREWSKAQRAYEDALQVDPSNEEA  117 (126)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHHCcCCHHH
Confidence            9999999999999999999999999999999874

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=99.63  E-value=1.2e-15  Score=143.80  Aligned_cols=139  Identities=21%  Similarity=0.162  Sum_probs=77.3

Q ss_pred             CCCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcCCHHHHHHHHHh---hCcCCcC----------CCCCHHHHHHHHH
Q 019586            3 QNNYIEAEDAYRRALSIAPDNNKMC-NLGICLMKQGRIGEAKETLRR---VKPAVAD----------GPRGVDSHLKAYE   68 (338)
Q Consensus         3 ~g~~eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k---~~p~~~d----------~lg~~deAi~~ye   68 (338)
                      .|++++|+.+|+++++++|++...+ ++|.+|..+|++++|+..|++   +.|.+..          ..|++++|+..|+
T Consensus       148 ~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~  227 (388)
T 1w3b_A          148 LGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYL  227 (388)
T ss_dssp             TSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHH
T ss_pred             ccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            4555666666666666666555544 566666666666666666655   2333322          2455666666666


Q ss_pred             HHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCcccc---cchhhhcCccHHHHHhhhhcccCCCh
Q 019586           69 RAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDHIL---PTTNAIKTRDDFADENIDSNVDVNPI  141 (338)
Q Consensus        69 kAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~~l---~~l~~~~~~~~~A~e~~~~al~~~P~  141 (338)
                      ++++++|+++.+|+++|.++..+|++++|+.+|+++++++|.++..+   +.+....++.+.|.+.+..++..+|.
T Consensus       228 ~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~  303 (388)
T 1w3b_A          228 RALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPT  303 (388)
T ss_dssp             HHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTT
T ss_pred             HHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc
Confidence            66666666666666666666666666666666666666666554422   22234445555555555555555554

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=99.63  E-value=2.6e-15  Score=141.53  Aligned_cols=175  Identities=18%  Similarity=0.178  Sum_probs=144.8

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcCCHHHHHHHHHhh---CcCCcC----------CCCCHHHHHHHH
Q 019586            2 QQNNYIEAEDAYRRALSIAPDNNKMC-NLGICLMKQGRIGEAKETLRRV---KPAVAD----------GPRGVDSHLKAY   67 (338)
Q Consensus         2 q~g~~eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k~---~p~~~d----------~lg~~deAi~~y   67 (338)
                      ..|++++|+.+|+++++++|++...+ ++|.++...|++++|+..|+++   .|.++.          ..|++++|+..|
T Consensus       181 ~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~  260 (388)
T 1w3b_A          181 AQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTY  260 (388)
T ss_dssp             TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            47899999999999999999999977 9999999999999999999984   454443          279999999999


Q ss_pred             HHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCcccc---cchhhhcCccHHHHHhhhhcccCCChhhh
Q 019586           68 ERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDHIL---PTTNAIKTRDDFADENIDSNVDVNPIVLS  144 (338)
Q Consensus        68 ekAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~~l---~~l~~~~~~~~~A~e~~~~al~~~P~~~~  144 (338)
                      +++++++|+++.+|+++|.++...|++++|+.+|+++++++|.+...+   +.+....++.+.|...+..++..+|....
T Consensus       261 ~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~  340 (388)
T 1w3b_A          261 RRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAA  340 (388)
T ss_dssp             HHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHH
T ss_pred             HHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHH
Confidence            999999999999999999999999999999999999999999987733   33356778888899999999888887433


Q ss_pred             hhhhh----hhh-------cchHHHHHHhHhHHHHhhchhhhh
Q 019586          145 KHRSV----KKL-------FPTANAIKTQENFADENINANIVV  176 (338)
Q Consensus       145 K~~~~----~kl-------~~~~~ai~~~~~~~e~y~nlg~~~  176 (338)
                      -...+    .+.       ..+.+++...|++.++++++|.+.
T Consensus       341 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~a~~~lg~~~  383 (388)
T 1w3b_A          341 AHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTL  383 (388)
T ss_dssp             HHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHhHHHHH
Confidence            22211    122       223346666788888888888855

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.63  E-value=4.6e-16  Score=152.21  Aligned_cols=143  Identities=10%  Similarity=-0.031  Sum_probs=120.4

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcCC-HHHHHHHHHh---hCcCCcC----------CCCCHHHHHHH
Q 019586            2 QQNNYIEAEDAYRRALSIAPDNNKMC-NLGICLMKQGR-IGEAKETLRR---VKPAVAD----------GPRGVDSHLKA   66 (338)
Q Consensus         2 q~g~~eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G~-~dEAi~~~~k---~~p~~~d----------~lg~~deAi~~   66 (338)
                      ..|++++|+.+|+++|+++|++..+| ++|.+|..+|+ +++|+.+|++   +.|.++.          .+|++++|+.+
T Consensus       109 ~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~~~~g~~~eAl~~  188 (382)
T 2h6f_A          109 RDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEF  188 (382)
T ss_dssp             HTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHH
T ss_pred             HCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCHHHHHHH
Confidence            35889999999999999999999987 99999999997 9999999999   4555554          27899999999


Q ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCcccccch---hhh-cCccHHH-----HHhhhhccc
Q 019586           67 YERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDHILPTT---NAI-KTRDDFA-----DENIDSNVD  137 (338)
Q Consensus        67 yekAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~~l~~l---~~~-~~~~~~A-----~e~~~~al~  137 (338)
                      |++||+++|++..+|+++|.++..+|++++|+.+|+++++++|.+...+..+   ... .+..+.|     .+.+..++.
T Consensus       189 ~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~  268 (382)
T 2h6f_A          189 IADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIK  268 (382)
T ss_dssp             HHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999988744332   223 3332444     366777777


Q ss_pred             CCChhhh
Q 019586          138 VNPIVLS  144 (338)
Q Consensus       138 ~~P~~~~  144 (338)
                      ++|....
T Consensus       269 l~P~~~~  275 (382)
T 2h6f_A          269 LVPHNES  275 (382)
T ss_dssp             HSTTCHH
T ss_pred             HCCCCHH
Confidence            7776543

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.62  E-value=1.4e-15  Score=134.76  Aligned_cols=131  Identities=14%  Similarity=0.045  Sum_probs=106.9

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHc-----------CCHHHHHHHHHh---hCcCCcC----------C
Q 019586            2 QQNNYIEAEDAYRRALSIAPDNNKMC-NLGICLMKQ-----------GRIGEAKETLRR---VKPAVAD----------G   56 (338)
Q Consensus         2 q~g~~eeAi~~y~kALeldPd~a~a~-nLG~~y~~~-----------G~~dEAi~~~~k---~~p~~~d----------~   56 (338)
                      +.|++++|+.+|+++++++|++..++ ++|.+|..+           |++++|+..|++   +.|.++.          .
T Consensus        51 ~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~  130 (217)
T 2pl2_A           51 KLGLVNPALENGKTLVARTPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYAL  130 (217)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence            47999999999999999999999977 999999999           999999999999   4565554          2


Q ss_pred             CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCccccc---chhhhcCccHHHHHhhh
Q 019586           57 PRGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDHILP---TTNAIKTRDDFADENID  133 (338)
Q Consensus        57 lg~~deAi~~yekAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~~l~---~l~~~~~~~~~A~e~~~  133 (338)
                      .|++++|+.+|+++++++ +++.+++++|.+|..+|++++|+.+|+++++++|+++..+.   .+....++.+.|.+.+.
T Consensus       131 ~g~~~~A~~~~~~al~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~  209 (217)
T 2pl2_A          131 LGERDKAEASLKQALALE-DTPEIRSALAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAA  209 (217)
T ss_dssp             TTCHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC------------
T ss_pred             cCChHHHHHHHHHHHhcc-cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHH
Confidence            899999999999999999 99999999999999999999999999999999999887332   22344555555544443

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.62  E-value=1.8e-15  Score=132.84  Aligned_cols=113  Identities=12%  Similarity=0.105  Sum_probs=102.2

Q ss_pred             CCCCHHHHHHHHHHHHHhCC-CCHHHH-HHHHHHHHcCCHHHHHHHHHhhCcCCcC-------------CCCCHHHHHHH
Q 019586            2 QQNNYIEAEDAYRRALSIAP-DNNKMC-NLGICLMKQGRIGEAKETLRRVKPAVAD-------------GPRGVDSHLKA   66 (338)
Q Consensus         2 q~g~~eeAi~~y~kALeldP-d~a~a~-nLG~~y~~~G~~dEAi~~~~k~~p~~~d-------------~lg~~deAi~~   66 (338)
                      ..|+|++|+.+|+++++++| .+...+ ++|.+|..+|++++|+.+|+++...++.             .+|++++|+.+
T Consensus        19 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~   98 (228)
T 4i17_A           19 NAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSAAYRDMKNNQEYIAT   98 (228)
T ss_dssp             HTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHcccHHHHHHH
Confidence            47999999999999999998 777755 9999999999999999999995544443             38999999999


Q ss_pred             HHHHHHhCCCCH-------HHHHHHHHHHHHCCCHHHHHHHHHHHHccCCC--Cccc
Q 019586           67 YERAQQMLKDLE-------SEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPC--KDHI  114 (338)
Q Consensus        67 yekAL~l~Pd~~-------~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~--~~~~  114 (338)
                      |++++++.|+++       .+|+++|.++..+|++++|+.+|+++++++|.  ++..
T Consensus        99 ~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~  155 (228)
T 4i17_A           99 LTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDA  155 (228)
T ss_dssp             HHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHH
T ss_pred             HHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHH
Confidence            999999999999       67999999999999999999999999999998  6663

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=99.61  E-value=2.3e-16  Score=132.78  Aligned_cols=113  Identities=6%  Similarity=-0.037  Sum_probs=96.9

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcCCHHHHHHHHHh---hCcCCcC----------CCCCHHHHHHHH
Q 019586            2 QQNNYIEAEDAYRRALSIAPDNNKMC-NLGICLMKQGRIGEAKETLRR---VKPAVAD----------GPRGVDSHLKAY   67 (338)
Q Consensus         2 q~g~~eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k---~~p~~~d----------~lg~~deAi~~y   67 (338)
                      .+|++++|+..|++++..+|+++..+ ++|.+|..+|+|++|+.+|++   +.|.++.          ..|++++|+.+|
T Consensus         9 ~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~   88 (150)
T 4ga2_A            9 SKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENTDKAVECY   88 (150)
T ss_dssp             CHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCchHHHHHHH
Confidence            35789999999999999999888855 999999999999999999998   5566555          278999999999


Q ss_pred             HHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHH-HHHHHccCCCCccc
Q 019586           68 ERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLG-SSSIWQPQPCKDHI  114 (338)
Q Consensus        68 ekAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~-yekALkl~P~~~~~  114 (338)
                      +++++++|+++.+|+++|.+|..+|++++|..+ ++++++++|+++.+
T Consensus        89 ~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~  136 (150)
T 4ga2_A           89 RRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAV  136 (150)
T ss_dssp             HHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHH
T ss_pred             HHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHH
Confidence            999999999999999999999999998887765 48899999988763

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=99.60  E-value=2e-15  Score=132.05  Aligned_cols=103  Identities=17%  Similarity=0.129  Sum_probs=92.7

Q ss_pred             CCCCHHHHHHHHHHHHHhCCC-------CHH-----HH-HHHHHHHHcCCHHHHHHHHHhhCcCCcCCCCCHHHHHHHHH
Q 019586            2 QQNNYIEAEDAYRRALSIAPD-------NNK-----MC-NLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYE   68 (338)
Q Consensus         2 q~g~~eeAi~~y~kALeldPd-------~a~-----a~-nLG~~y~~~G~~dEAi~~~~k~~p~~~d~lg~~deAi~~ye   68 (338)
                      +.|+|++|+.+|++||+++|+       +..     +| |+|.++..+|+|++|+..|++              |+..|.
T Consensus        23 ~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~k--------------AL~l~n   88 (159)
T 2hr2_A           23 VAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADK--------------ALHYFN   88 (159)
T ss_dssp             HHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH--------------HHHHHH
T ss_pred             HCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHH--------------HHHhhh
Confidence            468999999999999999999       443     55 999999999999888888844              777788


Q ss_pred             HHHHhCCCCHHHH----HHHHHHHHHCCCHHHHHHHHHHHHccCCCCcccccch
Q 019586           69 RAQQMLKDLESEM----MNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDHILPTT  118 (338)
Q Consensus        69 kAL~l~Pd~~~a~----~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~~l~~l  118 (338)
                      ++++++|++..+|    +++|.+|..+|++++|+.+|+++++++|++..+...+
T Consensus        89 ~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~~  142 (159)
T 2hr2_A           89 RRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGK  142 (159)
T ss_dssp             HHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTH
T ss_pred             ccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHH
Confidence            8888899999999    9999999999999999999999999999999877665

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=99.58  E-value=1.2e-14  Score=124.50  Aligned_cols=101  Identities=15%  Similarity=0.051  Sum_probs=70.9

Q ss_pred             HHHHHHHhCCCCHHHH-HHHHHHHHcCCHHHHHHHHHh---hCcCCcC----------CCCCHHHHHHHHHHHHHhCCCC
Q 019586           12 AYRRALSIAPDNNKMC-NLGICLMKQGRIGEAKETLRR---VKPAVAD----------GPRGVDSHLKAYERAQQMLKDL   77 (338)
Q Consensus        12 ~y~kALeldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k---~~p~~~d----------~lg~~deAi~~yekAL~l~Pd~   77 (338)
                      .|+++++++|++...+ ++|.+|..+|+|++|+..|++   +.|.++.          .+|++++|+.+|++|++++|++
T Consensus        24 ~l~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~  103 (151)
T 3gyz_A           24 TLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKND  103 (151)
T ss_dssp             CTGGGCCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSC
T ss_pred             CHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCC
Confidence            3445555555555433 555555555555555555554   2333332          1445577888888899999999


Q ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCc
Q 019586           78 ESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKD  112 (338)
Q Consensus        78 ~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~  112 (338)
                      +.+|+++|.+|..+|++++|+.+|++++++.|+.+
T Consensus       104 ~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~~~~  138 (151)
T 3gyz_A          104 YTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDEK  138 (151)
T ss_dssp             CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred             cHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence            99999999999999999999999999999998764

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.57  E-value=1.5e-14  Score=128.61  Aligned_cols=141  Identities=11%  Similarity=0.091  Sum_probs=121.3

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcCCHHHHHHHHHhhCc--CCcC--------------CCCCHHHHH
Q 019586            2 QQNNYIEAEDAYRRALSIAPDNNKMC-NLGICLMKQGRIGEAKETLRRVKP--AVAD--------------GPRGVDSHL   64 (338)
Q Consensus         2 q~g~~eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k~~p--~~~d--------------~lg~~deAi   64 (338)
                      ..|++++|+.+|+++++++|++...+ ++|.+|...|++++|+..|+++..  .++.              ..|++++|+
T Consensus        15 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~   94 (272)
T 3u4t_A           15 KNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKKGQDSLAI   94 (272)
T ss_dssp             TTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHcccHHHHH
Confidence            57999999999999999999999755 999999999999999999999433  2222              278999999


Q ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCcccccch---hhhcCccHHHHHhhhhcccCCCh
Q 019586           65 KAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDHILPTT---NAIKTRDDFADENIDSNVDVNPI  141 (338)
Q Consensus        65 ~~yekAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~~l~~l---~~~~~~~~~A~e~~~~al~~~P~  141 (338)
                      .+|+++++++|+.+.+|.++|.+|..+|++++|+.+|+++++++|.+...+..+   ....+..+.|...+..++..+|.
T Consensus        95 ~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~  174 (272)
T 3u4t_A           95 QQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSFVKVLELKPN  174 (272)
T ss_dssp             HHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcc
Confidence            999999999999999999999999999999999999999999999987733222   23344777788888888888887


Q ss_pred             h
Q 019586          142 V  142 (338)
Q Consensus       142 ~  142 (338)
                      .
T Consensus       175 ~  175 (272)
T 3u4t_A          175 I  175 (272)
T ss_dssp             C
T ss_pred             c
Confidence            4

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.57  E-value=3.2e-14  Score=131.56  Aligned_cols=174  Identities=16%  Similarity=0.075  Sum_probs=126.9

Q ss_pred             CCCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcCCHHHHHHHHHhh---CcCCcCC----------------------
Q 019586            3 QNNYIEAEDAYRRALSIAPDNNKMC-NLGICLMKQGRIGEAKETLRRV---KPAVADG----------------------   56 (338)
Q Consensus         3 ~g~~eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k~---~p~~~d~----------------------   56 (338)
                      .|++++|+.+|+++++++|++...+ ++|.+|..+|++++|+..|+++   .|.+...                      
T Consensus       111 ~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (368)
T 1fch_A          111 NEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGS  190 (368)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHH
T ss_pred             CcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHH
Confidence            5677777777777777777777755 7777777777777777777772   3332221                      


Q ss_pred             ---CCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCccc---ccchhhhcCccHHH
Q 019586           57 ---PRGVDSHLKAYERAQQMLKD--LESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDHI---LPTTNAIKTRDDFA  128 (338)
Q Consensus        57 ---lg~~deAi~~yekAL~l~Pd--~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~~---l~~l~~~~~~~~~A  128 (338)
                         .|++++|+.+|++++++.|+  .+.+++++|.++...|++++|+.+|+++++++|.++..   ++.+....++.+.|
T Consensus       191 ~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A  270 (368)
T 1fch_A          191 LLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEA  270 (368)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred             HhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHHH
Confidence               25788888888999999998  88999999999999999999999999999999998763   33345678888889


Q ss_pred             HHhhhhcccCCChhhhhhhh----hhhhcch-------HHHHHHhHhH-----------HHHhhchhhhh
Q 019586          129 DENIDSNVDVNPIVLSKHRS----VKKLFPT-------ANAIKTQENF-----------ADENINANIVV  176 (338)
Q Consensus       129 ~e~~~~al~~~P~~~~K~~~----~~kl~~~-------~~ai~~~~~~-----------~e~y~nlg~~~  176 (338)
                      ...+..++..+|....-...    ......+       .+++...|+.           ..++.++|.+.
T Consensus       271 ~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~  340 (368)
T 1fch_A          271 VAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLAL  340 (368)
T ss_dssp             HHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHH
Confidence            99998888888864332222    2222233       2345556665           67777777755

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.56  E-value=1.2e-14  Score=144.50  Aligned_cols=142  Identities=15%  Similarity=0.095  Sum_probs=125.2

Q ss_pred             CCCCH-HHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcCCHHHHHHHHHhhCcCCcC------------CC---------C
Q 019586            2 QQNNY-IEAEDAYRRALSIAPDNNKMC-NLGICLMKQGRIGEAKETLRRVKPAVAD------------GP---------R   58 (338)
Q Consensus         2 q~g~~-eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k~~p~~~d------------~l---------g   58 (338)
                      ..|+| ++|+.+|++|++++|++..+| ++|.+|..+|++++|+.+|+++....++            .+         |
T Consensus       114 ~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~lg~~~~~~~~~~~~~~~g  193 (474)
T 4abn_A          114 VTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKNKVSLQNLSMVLRQLQTDSGDEHSR  193 (474)
T ss_dssp             SSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCCSCHHHHHH
T ss_pred             hccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhccCChhhhhh
Confidence            57899 999999999999999999977 9999999999999999999995444443            36         8


Q ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC--------CCHHHHHHHHHHHHccCC---CCccc---ccchhhhcCc
Q 019586           59 GVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQ--------SRLFDAFLGSSSIWQPQP---CKDHI---LPTTNAIKTR  124 (338)
Q Consensus        59 ~~deAi~~yekAL~l~Pd~~~a~~nLG~~l~~l--------Gr~~eAi~~yekALkl~P---~~~~~---l~~l~~~~~~  124 (338)
                      ++++|+.+|++|++++|+++.+|+++|.+|..+        |++++|+.+|+++++++|   .++..   ++.+....++
T Consensus       194 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~  273 (474)
T 4abn_A          194 HVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEES  273 (474)
T ss_dssp             HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTC
T ss_pred             hHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCC
Confidence            999999999999999999999999999999999        999999999999999999   77763   3334667888


Q ss_pred             cHHHHHhhhhcccCCChhh
Q 019586          125 DDFADENIDSNVDVNPIVL  143 (338)
Q Consensus       125 ~~~A~e~~~~al~~~P~~~  143 (338)
                      .+.|.+.+..++..+|...
T Consensus       274 ~~~A~~~~~~al~l~p~~~  292 (474)
T 4abn_A          274 YGEALEGFSQAAALDPAWP  292 (474)
T ss_dssp             HHHHHHHHHHHHHHCTTCH
T ss_pred             HHHHHHHHHHHHHhCCCCH
Confidence            8888888888888777644

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.55  E-value=3.5e-14  Score=120.27  Aligned_cols=112  Identities=13%  Similarity=0.086  Sum_probs=103.6

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcCCHHHHHHHHHh---hCcCCcC----------CCCCHHHHHHHH
Q 019586            2 QQNNYIEAEDAYRRALSIAPDNNKMC-NLGICLMKQGRIGEAKETLRR---VKPAVAD----------GPRGVDSHLKAY   67 (338)
Q Consensus         2 q~g~~eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k---~~p~~~d----------~lg~~deAi~~y   67 (338)
                      ..|++++|+..+.+++...|++...+ ++|.++...+++++|+..+.+   ..|.+..          .+|++++|+.+|
T Consensus        51 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~  130 (184)
T 3vtx_A           51 DIGLPNDAIESLKKFVVLDTTSAEAYYILGSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAY  130 (184)
T ss_dssp             HTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHH
Confidence            47899999999999999999999977 999999999999999999999   4455444          289999999999


Q ss_pred             HHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCcc
Q 019586           68 ERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDH  113 (338)
Q Consensus        68 ekAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~  113 (338)
                      +++++++|+++.+|+++|.+|..+|++++|+.+|+++++++|+++.
T Consensus       131 ~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~a~  176 (184)
T 3vtx_A          131 EKTISIKPGFIRAYQSIGLAYEGKGLRDEAVKYFKKALEKEEKKAK  176 (184)
T ss_dssp             HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTHHHHH
T ss_pred             HHHHHhcchhhhHHHHHHHHHHHCCCHHHHHHHHHHHHhCCccCHH
Confidence            9999999999999999999999999999999999999999998765

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=99.54  E-value=1.5e-14  Score=127.32  Aligned_cols=141  Identities=14%  Similarity=0.091  Sum_probs=110.8

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCCHHHH-H----------------HHHHHHHcCCHHHHHHHHHh---hCcCCcC------
Q 019586            2 QQNNYIEAEDAYRRALSIAPDNNKMC-N----------------LGICLMKQGRIGEAKETLRR---VKPAVAD------   55 (338)
Q Consensus         2 q~g~~eeAi~~y~kALeldPd~a~a~-n----------------LG~~y~~~G~~dEAi~~~~k---~~p~~~d------   55 (338)
                      ..|+|++|+.+|+++++++|+++.++ .                +|.+|..+|++++|+..|++   +.|.++.      
T Consensus        16 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg   95 (208)
T 3urz_A           16 EAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACA   95 (208)
T ss_dssp             HTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             HCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHH
Confidence            47999999999999999999999866 7                99999999999999999999   4555554      


Q ss_pred             ----CCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC--HHHHHHHHHHHHccCCCCcc--cccchhhhcCccHH
Q 019586           56 ----GPRGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQSR--LFDAFLGSSSIWQPQPCKDH--ILPTTNAIKTRDDF  127 (338)
Q Consensus        56 ----~lg~~deAi~~yekAL~l~Pd~~~a~~nLG~~l~~lGr--~~eAi~~yekALkl~P~~~~--~l~~l~~~~~~~~~  127 (338)
                          ..|++++|+.+|+++++++|+++.+|+++|.+|..+|+  ...+..+|.+++...|....  ..+......++.+.
T Consensus        96 ~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~~~~~~~  175 (208)
T 3urz_A           96 EMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKMQYARYRDGLSKLFTTRYEK  175 (208)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHHHHTHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHccCHHH
Confidence                27899999999999999999999999999999877764  45667778887655443211  11222344566778


Q ss_pred             HHHhhhhcccCCChh
Q 019586          128 ADENIDSNVDVNPIV  142 (338)
Q Consensus       128 A~e~~~~al~~~P~~  142 (338)
                      |...+..++.++|..
T Consensus       176 A~~~~~~al~l~P~~  190 (208)
T 3urz_A          176 ARNSLQKVILRFPST  190 (208)
T ss_dssp             HHHHHHHHTTTSCCH
T ss_pred             HHHHHHHHHHhCCCH
Confidence            999999999999974

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.53  E-value=9.7e-14  Score=129.35  Aligned_cols=139  Identities=18%  Similarity=0.117  Sum_probs=88.6

Q ss_pred             CCCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcCCHHHHHHHHHhh---CcCCcC--------------------CCC
Q 019586            3 QNNYIEAEDAYRRALSIAPDNNKMC-NLGICLMKQGRIGEAKETLRRV---KPAVAD--------------------GPR   58 (338)
Q Consensus         3 ~g~~eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k~---~p~~~d--------------------~lg   58 (338)
                      .|++++|+.+|+++++++|++...+ ++|.+|..+|++++|+.+|+++   .|.+..                    ..|
T Consensus       112 ~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g  191 (365)
T 4eqf_A          112 NENEQAAIVALQRCLELQPNNLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSS  191 (365)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCH
T ss_pred             CCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhh
Confidence            4666666666666666666666655 6666666666666666666662   222111                    245


Q ss_pred             CHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCcccc---cchhhhcCccHHHHHhhh
Q 019586           59 GVDSHLKAYERAQQMLKD--LESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDHIL---PTTNAIKTRDDFADENID  133 (338)
Q Consensus        59 ~~deAi~~yekAL~l~Pd--~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~~l---~~l~~~~~~~~~A~e~~~  133 (338)
                      ++++|+.+|++++++.|+  .+.+|+++|.+|..+|++++|+.+|+++++++|.++..+   +.+....++.+.|...+.
T Consensus       192 ~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~  271 (365)
T 4eqf_A          192 VLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYT  271 (365)
T ss_dssp             HHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            677777777777777777  677777777777777777777777777777777766522   222345555555665555


Q ss_pred             hcccCCCh
Q 019586          134 SNVDVNPI  141 (338)
Q Consensus       134 ~al~~~P~  141 (338)
                      .++..+|.
T Consensus       272 ~al~~~p~  279 (365)
T 4eqf_A          272 RALEIQPG  279 (365)
T ss_dssp             HHHHHCTT
T ss_pred             HHHhcCCC
Confidence            55544443

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.53  E-value=6.4e-15  Score=137.38  Aligned_cols=194  Identities=13%  Similarity=0.041  Sum_probs=144.3

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcCCHHHHHHHHHhh---CcCCcC----------CCCCHHHHHHHH
Q 019586            2 QQNNYIEAEDAYRRALSIAPDNNKMC-NLGICLMKQGRIGEAKETLRRV---KPAVAD----------GPRGVDSHLKAY   67 (338)
Q Consensus         2 q~g~~eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k~---~p~~~d----------~lg~~deAi~~y   67 (338)
                      +.|++++|+.+|+++++++|++...+ ++|.+|..+|++++|+.+|+++   .|.++.          ..|++++|+.+|
T Consensus        77 ~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~  156 (365)
T 4eqf_A           77 KEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYTNTSHQQDACEAL  156 (365)
T ss_dssp             HHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccccHHHHHHHH
Confidence            46899999999999999999999977 9999999999999999999994   444443          289999999999


Q ss_pred             HHHHHhCCCCHHHHHHH----------HHHHHHCCCHHHHHHHHHHHHccCCC--Ccc---cccchhhhcCccHHHHHhh
Q 019586           68 ERAQQMLKDLESEMMNK----------GGDRVEQSRLFDAFLGSSSIWQPQPC--KDH---ILPTTNAIKTRDDFADENI  132 (338)
Q Consensus        68 ekAL~l~Pd~~~a~~nL----------G~~l~~lGr~~eAi~~yekALkl~P~--~~~---~l~~l~~~~~~~~~A~e~~  132 (338)
                      ++++++.|+...++..+          |.++...|++++|+.+|+++++++|.  ++.   .++.+....++.+.|...+
T Consensus       157 ~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~  236 (365)
T 4eqf_A          157 KNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAF  236 (365)
T ss_dssp             HHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred             HHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence            99999999877666655          99999999999999999999999998  554   2333356778888899999


Q ss_pred             hhcccCCChhhhhhhhhh----hhc-------chHHHHHHhHhHHHHhhchhhhhhHhhhhhhhhhhhhccccccCCC
Q 019586          133 DSNVDVNPIVLSKHRSVK----KLF-------PTANAIKTQENFADENINANIVVNQTVLAQQRGVQQLAPFGNSWNI  199 (338)
Q Consensus       133 ~~al~~~P~~~~K~~~~~----kl~-------~~~~ai~~~~~~~e~y~nlg~~~~~~~~~d~r~~~~~~~~~~~~~~  199 (338)
                      ..++..+|....-...+.    ...       .+.+++...|+...++.++|.+.    ....++.+++..+...+.+
T Consensus       237 ~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~----~~~g~~~~A~~~~~~al~~  310 (365)
T 4eqf_A          237 NAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISC----INLGAYREAVSNFLTALSL  310 (365)
T ss_dssp             HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH----HHHTCCHHHHHHHHHHHHH
T ss_pred             HHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHH----HHCCCHHHHHHHHHHHHHh
Confidence            998888887433222221    222       23346666788888899998844    5555666666655555555

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.53  E-value=3.3e-14  Score=123.58  Aligned_cols=140  Identities=12%  Similarity=0.008  Sum_probs=112.9

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcCCHHHHHHHHHhhC---cCCcC----------CCCCHHHHHHHH
Q 019586            2 QQNNYIEAEDAYRRALSIAPDNNKMC-NLGICLMKQGRIGEAKETLRRVK---PAVAD----------GPRGVDSHLKAY   67 (338)
Q Consensus         2 q~g~~eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k~~---p~~~d----------~lg~~deAi~~y   67 (338)
                      ..|++++|+.+|+++++.+|++...+ .+|.+|...|++++|+..|+++.   |..+.          ..|++++|+..|
T Consensus        35 ~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~  114 (243)
T 2q7f_A           35 EFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMF  114 (243)
T ss_dssp             -------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhccHHHHHHHH
Confidence            56899999999999999999999877 99999999999999999999943   43333          278999999999


Q ss_pred             HHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCcccc---cchhhhcCccHHHHHhhhhcccCCCh
Q 019586           68 ERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDHIL---PTTNAIKTRDDFADENIDSNVDVNPI  141 (338)
Q Consensus        68 ekAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~~l---~~l~~~~~~~~~A~e~~~~al~~~P~  141 (338)
                      ++++++.|+...++..+|.++...|++++|+.+|+++++..|.+...+   +.+....++.+.|...+...+..+|.
T Consensus       115 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~  191 (243)
T 2q7f_A          115 EKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPG  191 (243)
T ss_dssp             HHHHHHTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTT
T ss_pred             HHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence            999999999999999999999999999999999999999999877632   33355667777777777777766664

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=99.52  E-value=8.6e-14  Score=125.85  Aligned_cols=135  Identities=15%  Similarity=0.051  Sum_probs=80.4

Q ss_pred             CCCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcC-CHHHHHHHHHhhC---cCCcC----------CCCCHHHHHHHH
Q 019586            3 QNNYIEAEDAYRRALSIAPDNNKMC-NLGICLMKQG-RIGEAKETLRRVK---PAVAD----------GPRGVDSHLKAY   67 (338)
Q Consensus         3 ~g~~eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G-~~dEAi~~~~k~~---p~~~d----------~lg~~deAi~~y   67 (338)
                      .|++++|+.+|+++++.+|++...+ .+|.++...| ++++|+.+|+++.   |.++.          ..|++++|+.+|
T Consensus        69 ~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~  148 (330)
T 3hym_B           69 LNKANELFYLSHKLVDLYPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAY  148 (330)
T ss_dssp             HTCHHHHHHHHHHHHHHCTTSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred             hhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHH
Confidence            3566666666666666666666644 6666666666 6666666666632   22222          145666666666


Q ss_pred             HHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCccc---ccchhhhcCccHHHHHhhhhccc
Q 019586           68 ERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDHI---LPTTNAIKTRDDFADENIDSNVD  137 (338)
Q Consensus        68 ekAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~~---l~~l~~~~~~~~~A~e~~~~al~  137 (338)
                      ++++++.|+...+++.+|.++...|++++|+.+|+++++.+|.++..   ++.+....++.+.|...+..++.
T Consensus       149 ~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~  221 (330)
T 3hym_B          149 FTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALE  221 (330)
T ss_dssp             HHHHHHTTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHhccccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence            66666666666666666666666666666666666666666665542   22223455555555555555444

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.52  E-value=2.6e-14  Score=150.79  Aligned_cols=124  Identities=19%  Similarity=0.159  Sum_probs=106.7

Q ss_pred             hCCCCHHHH-HHHHHHHHcCCHHHHHHHHHh---hCcCCcC----------CCCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 019586           19 IAPDNNKMC-NLGICLMKQGRIGEAKETLRR---VKPAVAD----------GPRGVDSHLKAYERAQQMLKDLESEMMNK   84 (338)
Q Consensus        19 ldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k---~~p~~~d----------~lg~~deAi~~yekAL~l~Pd~~~a~~nL   84 (338)
                      -.|++++++ |||.+|..+|++++|+.+|++   +.|+++.          .+|++++|+.+|++|++++|+++.+|++|
T Consensus         4 s~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nL   83 (723)
T 4gyw_A            4 SCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNM   83 (723)
T ss_dssp             --CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence            468888877 999999999999999999999   5566655          28999999999999999999999999999


Q ss_pred             HHHHHHCCCHHHHHHHHHHHHccCCCCcccc---cchhhhcCccHHHHHhhhhcccCCChh
Q 019586           85 GGDRVEQSRLFDAFLGSSSIWQPQPCKDHIL---PTTNAIKTRDDFADENIDSNVDVNPIV  142 (338)
Q Consensus        85 G~~l~~lGr~~eAi~~yekALkl~P~~~~~l---~~l~~~~~~~~~A~e~~~~al~~~P~~  142 (338)
                      |.+|..+|++++|+.+|+++++++|+++..+   +.+....++.+.|.+.+..++.++|..
T Consensus        84 g~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~  144 (723)
T 4gyw_A           84 GNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDF  144 (723)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCC
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence            9999999999999999999999999998743   334567788888888877777666653

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=99.52  E-value=1.8e-14  Score=122.99  Aligned_cols=134  Identities=11%  Similarity=-0.008  Sum_probs=108.5

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcCCHHHHHHHHHhhCcCCc--CC-----------CCCHHHHHHHH
Q 019586            2 QQNNYIEAEDAYRRALSIAPDNNKMC-NLGICLMKQGRIGEAKETLRRVKPAVA--DG-----------PRGVDSHLKAY   67 (338)
Q Consensus         2 q~g~~eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k~~p~~~--d~-----------lg~~deAi~~y   67 (338)
                      +.|++++|+..|+++++++|++..++ ++|.+|..+|++++|+..|+++....+  ..           .++..+|+..|
T Consensus        18 ~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~a~~~~   97 (176)
T 2r5s_A           18 QQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQDNSYKSLIAKLELHQQAAESPELKRL   97 (176)
T ss_dssp             HTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGCCHHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccCChHHHHHHHHHHHHhhcccchHHHHH
Confidence            47999999999999999999999977 999999999999999999999554433  21           11234579999


Q ss_pred             HHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCcc-----cccchhhhcCccHHHHHhhhhc
Q 019586           68 ERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDH-----ILPTTNAIKTRDDFADENIDSN  135 (338)
Q Consensus        68 ekAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~-----~l~~l~~~~~~~~~A~e~~~~a  135 (338)
                      +++++++|+++.+++++|.++...|++++|+.+|+++++++|....     .++.+....++.+.+...+...
T Consensus        98 ~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~a  170 (176)
T 2r5s_A           98 EQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYRRQ  170 (176)
T ss_dssp             HHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHH
T ss_pred             HHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHHHH
Confidence            9999999999999999999999999999999999999999998633     2223344555555555554443

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=99.51  E-value=5.7e-14  Score=114.27  Aligned_cols=91  Identities=13%  Similarity=0.103  Sum_probs=78.8

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcCCHHHHHHHHHhhCcCCcCCCCCHHHHHHHHHHHHHhCCCCHHH
Q 019586            2 QQNNYIEAEDAYRRALSIAPDNNKMC-NLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDLESE   80 (338)
Q Consensus         2 q~g~~eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k~~p~~~d~lg~~deAi~~yekAL~l~Pd~~~a   80 (338)
                      +.|++++|+..|+++++++|++..+| ++|.++..+|++                     ++|+.+|++|++++|+++.+
T Consensus        29 ~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~---------------------~~A~~~~~~al~l~P~~~~~   87 (121)
T 1hxi_A           29 KLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKD---------------------GLAIIALNHARMLDPKDIAV   87 (121)
T ss_dssp             HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCH---------------------HHHHHHHHHHHHHCTTCHHH
T ss_pred             HcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCH---------------------HHHHHHHHHHHHhCCCCHHH
Confidence            47899999999999999999999977 999999999999                     56666777799999999999


Q ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHccCCCCcc
Q 019586           81 MMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDH  113 (338)
Q Consensus        81 ~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~  113 (338)
                      |+++|.+|..+|++++|+.+|+++++++|.+..
T Consensus        88 ~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~  120 (121)
T 1hxi_A           88 HAALAVSHTNEHNANAALASLRAWLLSQPQYEQ  120 (121)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHC-------
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCCC
Confidence            999999999999999999999999999998754

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=99.51  E-value=1.7e-14  Score=126.10  Aligned_cols=100  Identities=10%  Similarity=0.053  Sum_probs=89.9

Q ss_pred             CCCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcCCHHHHHHHHHhhCcCCcCCCCCHHHHHHHHHHHHHhCCCCHHHH
Q 019586            3 QNNYIEAEDAYRRALSIAPDNNKMC-NLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDLESEM   81 (338)
Q Consensus         3 ~g~~eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k~~p~~~d~lg~~deAi~~yekAL~l~Pd~~~a~   81 (338)
                      .+.|++|+..|++|++++|+++++| ++|.++..+++++.+......           +++|+..|++||+++|++..+|
T Consensus        15 ~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~-----------~~eAi~~le~AL~ldP~~~~A~   83 (158)
T 1zu2_A           15 ILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQM-----------IQEAITKFEEALLIDPKKDEAV   83 (158)
T ss_dssp             HHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHH-----------HHHHHHHHHHHHHHCTTCHHHH
T ss_pred             HhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhH-----------HHHHHHHHHHHHHhCcCcHHHH
Confidence            3568999999999999999999988 899999999998755554443           4899999999999999999999


Q ss_pred             HHHHHHHHHCC-----------CHHHHHHHHHHHHccCCCCcc
Q 019586           82 MNKGGDRVEQS-----------RLFDAFLGSSSIWQPQPCKDH  113 (338)
Q Consensus        82 ~nLG~~l~~lG-----------r~~eAi~~yekALkl~P~~~~  113 (338)
                      +++|.+|..+|           ++++|+.+|++|++++|++..
T Consensus        84 ~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~  126 (158)
T 1zu2_A           84 WCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTH  126 (158)
T ss_dssp             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHH
T ss_pred             HHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCCCCHH
Confidence            99999999885           899999999999999998753

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.51  E-value=2e-14  Score=127.27  Aligned_cols=194  Identities=11%  Similarity=0.042  Sum_probs=138.4

Q ss_pred             CCCCHHHHHHHHHHHHHhCC----CCHHHH-HHHHHHHHcCCHHHHHHHHHhh---CcCCcC----------CCCCHHHH
Q 019586            2 QQNNYIEAEDAYRRALSIAP----DNNKMC-NLGICLMKQGRIGEAKETLRRV---KPAVAD----------GPRGVDSH   63 (338)
Q Consensus         2 q~g~~eeAi~~y~kALeldP----d~a~a~-nLG~~y~~~G~~dEAi~~~~k~---~p~~~d----------~lg~~deA   63 (338)
                      ..|++++|+..|+++++..+    .+...+ ++|.+|...|++++|+.+|+++   .|.++.          ..|++++|
T Consensus        17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A   96 (275)
T 1xnf_A           17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAA   96 (275)
T ss_dssp             CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHH
T ss_pred             ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHHH
Confidence            35789999999999999854    344444 9999999999999999999994   444443          28999999


Q ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCcc--cccchhhhcCccHHHHHhhhhcccCCCh
Q 019586           64 LKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDH--ILPTTNAIKTRDDFADENIDSNVDVNPI  141 (338)
Q Consensus        64 i~~yekAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~--~l~~l~~~~~~~~~A~e~~~~al~~~P~  141 (338)
                      +.+|++++++.|++..+|+++|.+|..+|++++|+.+|+++++++|.+..  ....+....+..+.+...+...+...|.
T Consensus        97 ~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~  176 (275)
T 1xnf_A           97 YEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDK  176 (275)
T ss_dssp             HHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCC
T ss_pred             HHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCc
Confidence            99999999999999999999999999999999999999999999999874  1111233445666676666665555554


Q ss_pred             hhhhh---hhhhhhcc-------hHHHHHH----hHhHHHHhhchhhhhhHhhhhhhhhhhhhccccccCCC
Q 019586          142 VLSKH---RSVKKLFP-------TANAIKT----QENFADENINANIVVNQTVLAQQRGVQQLAPFGNSWNI  199 (338)
Q Consensus       142 ~~~K~---~~~~kl~~-------~~~ai~~----~~~~~e~y~nlg~~~~~~~~~d~r~~~~~~~~~~~~~~  199 (338)
                      .....   ........       +.+++..    .+...+++.++|.+    +....++.+++..+...+.+
T Consensus       177 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~----~~~~g~~~~A~~~~~~al~~  244 (275)
T 1xnf_A          177 EQWGWNIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKY----YLSLGDLDSATALFKLAVAN  244 (275)
T ss_dssp             CSTHHHHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHH----HHHTTCHHHHHHHHHHHHTT
T ss_pred             chHHHHHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHH----HHHcCCHHHHHHHHHHHHhC
Confidence            22111   11111111       1122222    23447888888884    45556666676666665655

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=99.51  E-value=8.5e-14  Score=117.10  Aligned_cols=105  Identities=10%  Similarity=0.013  Sum_probs=86.9

Q ss_pred             HHHHHHHHHHhCCCCHHHH-HHHHHHHHcCCHHHHHHHHHh---hCcCCcC----------CCCCHHHHHHHHHHHHHhC
Q 019586            9 AEDAYRRALSIAPDNNKMC-NLGICLMKQGRIGEAKETLRR---VKPAVAD----------GPRGVDSHLKAYERAQQML   74 (338)
Q Consensus         9 Ai~~y~kALeldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k---~~p~~~d----------~lg~~deAi~~yekAL~l~   74 (338)
                      +...|++++.++|++...+ ++|.++..+|+|++|+..|++   +.|.++.          ..|++++|+.+|+++++++
T Consensus         6 ~~~~~~~al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~   85 (148)
T 2vgx_A            6 GGGTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD   85 (148)
T ss_dssp             CCCSHHHHTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred             hhhhHHHHHcCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence            3456777788877777755 788888888888888888877   3444443          2677899999999999999


Q ss_pred             CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCcc
Q 019586           75 KDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDH  113 (338)
Q Consensus        75 Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~  113 (338)
                      |+++.+|+++|.+|..+|++++|+.+|+++++++|.++.
T Consensus        86 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~  124 (148)
T 2vgx_A           86 IXEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPE  124 (148)
T ss_dssp             TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGG
T ss_pred             CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCCc
Confidence            999999999999999999999999999999999998876

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=99.51  E-value=5.3e-14  Score=112.66  Aligned_cols=91  Identities=12%  Similarity=0.158  Sum_probs=83.5

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcCCHHHHHHHHHhhCcCCcCCCCCHHHHHHHHHHHHHhCCCCHHH
Q 019586            2 QQNNYIEAEDAYRRALSIAPDNNKMC-NLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDLESE   80 (338)
Q Consensus         2 q~g~~eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k~~p~~~d~lg~~deAi~~yekAL~l~Pd~~~a   80 (338)
                      +.|+|++|+.+|+++++++|++..++ ++|.+|..+|++                     ++|+.+|+++++++|+++.+
T Consensus        16 ~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~---------------------~~A~~~~~~al~~~p~~~~~   74 (126)
T 3upv_A           16 TKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSF---------------------PEAIADCNKAIEKDPNFVRA   74 (126)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH---------------------HHHHHHHHHHHHHCTTCHHH
T ss_pred             HhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCH---------------------HHHHHHHHHHHHhCCCcHHH
Confidence            47899999999999999999999977 999999999999                     55666677799999999999


Q ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHccC------CCCcc
Q 019586           81 MMNKGGDRVEQSRLFDAFLGSSSIWQPQ------PCKDH  113 (338)
Q Consensus        81 ~~nLG~~l~~lGr~~eAi~~yekALkl~------P~~~~  113 (338)
                      |+++|.++..+|++++|+.+|+++++++      |.+..
T Consensus        75 ~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~  113 (126)
T 3upv_A           75 YIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSARE  113 (126)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHH
T ss_pred             HHHHHHHHHHHhCHHHHHHHHHHHHHhCcccCCchhHHH
Confidence            9999999999999999999999999999      66554

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=99.50  E-value=1.2e-13  Score=124.12  Aligned_cols=112  Identities=9%  Similarity=0.033  Sum_probs=99.9

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCC---HHHH-HHHHHHHHcCCHHHHHHHHHhh---CcCCcC-------------C-----
Q 019586            2 QQNNYIEAEDAYRRALSIAPDN---NKMC-NLGICLMKQGRIGEAKETLRRV---KPAVAD-------------G-----   56 (338)
Q Consensus         2 q~g~~eeAi~~y~kALeldPd~---a~a~-nLG~~y~~~G~~dEAi~~~~k~---~p~~~d-------------~-----   56 (338)
                      +.|+|++|+..|+++++.+|++   ..++ .+|.+|..+|+|++|+..|+++   .|.++.             .     
T Consensus        27 ~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~  106 (261)
T 3qky_A           27 NQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYERAMCYYKLSPPY  106 (261)
T ss_dssp             HTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHCCCT
T ss_pred             HhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHHHHHHHHHhcccc
Confidence            4799999999999999999998   6665 9999999999999999999994   444433             2     


Q ss_pred             ---CCCHHHHHHHHHHHHHhCCCCHHHH-----------------HHHHHHHHHCCCHHHHHHHHHHHHccCCCCcc
Q 019586           57 ---PRGVDSHLKAYERAQQMLKDLESEM-----------------MNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDH  113 (338)
Q Consensus        57 ---lg~~deAi~~yekAL~l~Pd~~~a~-----------------~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~  113 (338)
                         .|++++|+..|+++++..|++..++                 +.+|.+|..+|++++|+.+|+++++..|++..
T Consensus       107 ~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~  183 (261)
T 3qky_A          107 ELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEAVFDAYPDTPW  183 (261)
T ss_dssp             TSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTT
T ss_pred             cccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCch
Confidence               7899999999999999999987665                 88999999999999999999999999998654

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.50  E-value=6.3e-14  Score=137.01  Aligned_cols=139  Identities=6%  Similarity=-0.125  Sum_probs=113.2

Q ss_pred             CCCC-HHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcCCHHHHHHHHHh---hCcCCcC----------CCCCHHHHHHH
Q 019586            2 QQNN-YIEAEDAYRRALSIAPDNNKMC-NLGICLMKQGRIGEAKETLRR---VKPAVAD----------GPRGVDSHLKA   66 (338)
Q Consensus         2 q~g~-~eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k---~~p~~~d----------~lg~~deAi~~   66 (338)
                      .+|+ +++|+.+|++||+++|++..+| ++|.+|..+|++++|+..|++   +.|.+..          .+|++++|+.+
T Consensus       143 ~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~  222 (382)
T 2h6f_A          143 SLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQY  222 (382)
T ss_dssp             HTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHH
T ss_pred             HcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHH
Confidence            3576 9999999999999999999977 999999999999999999999   4555554          27899999999


Q ss_pred             HHHHHHhCCCCHHHHHHHHHHHHH-CCCHHHH-----HHHHHHHHccCCCCcccccch---hhhcC--ccHHHHHhhhhc
Q 019586           67 YERAQQMLKDLESEMMNKGGDRVE-QSRLFDA-----FLGSSSIWQPQPCKDHILPTT---NAIKT--RDDFADENIDSN  135 (338)
Q Consensus        67 yekAL~l~Pd~~~a~~nLG~~l~~-lGr~~eA-----i~~yekALkl~P~~~~~l~~l---~~~~~--~~~~A~e~~~~a  135 (338)
                      |+++|+++|++..+|+++|.+|.. .|++++|     +.+|+++++++|++...+..+   ....+  ....+.+.+...
T Consensus       223 ~~~al~l~P~~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~  302 (382)
T 2h6f_A          223 VDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL  302 (382)
T ss_dssp             HHHHHHHCTTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH
T ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh
Confidence            999999999999999999999999 6665888     599999999999998733222   22333  344555555444


Q ss_pred             ccCCCh
Q 019586          136 VDVNPI  141 (338)
Q Consensus       136 l~~~P~  141 (338)
                       ..+|.
T Consensus       303 -~~~p~  307 (382)
T 2h6f_A          303 -QPSHS  307 (382)
T ss_dssp             -TTTCC
T ss_pred             -ccCCC
Confidence             55554

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=99.50  E-value=6.3e-14  Score=134.85  Aligned_cols=176  Identities=11%  Similarity=0.035  Sum_probs=132.5

Q ss_pred             CCCCHHHHHHHHHHHHHh---------CCCCHHHH-HHHHHHHHcCCHHHHHHHHHhhC---cC-----CcC--------
Q 019586            2 QQNNYIEAEDAYRRALSI---------APDNNKMC-NLGICLMKQGRIGEAKETLRRVK---PA-----VAD--------   55 (338)
Q Consensus         2 q~g~~eeAi~~y~kALel---------dPd~a~a~-nLG~~y~~~G~~dEAi~~~~k~~---p~-----~~d--------   55 (338)
                      .+|++++|+.+|++|+++         +|.....| |+|.+|..+|++++|+.+|+++.   +.     ..+        
T Consensus        63 ~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~~  142 (472)
T 4g1t_A           63 LKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEE  142 (472)
T ss_dssp             HTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHHHH
T ss_pred             HCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhHHHHHHH
Confidence            379999999999999997         56677766 99999999999999999999832   21     111        


Q ss_pred             -------CCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH---HCCCHHHHHHHHHHHHccCCCCcccccch-------
Q 019586           56 -------GPRGVDSHLKAYERAQQMLKDLESEMMNKGGDRV---EQSRLFDAFLGSSSIWQPQPCKDHILPTT-------  118 (338)
Q Consensus        56 -------~lg~~deAi~~yekAL~l~Pd~~~a~~nLG~~l~---~lGr~~eAi~~yekALkl~P~~~~~l~~l-------  118 (338)
                             ..+++++|+.+|++|++++|+++.++.++|.++.   ..+++++|+.+|+++++++|.++..+..+       
T Consensus       143 g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~~~~~~l~~~~~~~  222 (472)
T 4g1t_A          143 GWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLALKLHKM  222 (472)
T ss_dssp             HHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCHHHHHHHHHHHHHC
T ss_pred             HHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcchHHHHHHHHHHHHH
Confidence                   2457999999999999999999999999998854   56888999999999999999988744332       


Q ss_pred             hhhcCccHHHHHhhhhcccCCChhhhhhhhhh-----------hhcchHHHHHHhHhHHHHhhchhhhhh
Q 019586          119 NAIKTRDDFADENIDSNVDVNPIVLSKHRSVK-----------KLFPTANAIKTQENFADENINANIVVN  177 (338)
Q Consensus       119 ~~~~~~~~~A~e~~~~al~~~P~~~~K~~~~~-----------kl~~~~~ai~~~~~~~e~y~nlg~~~~  177 (338)
                      ....+..+.+...+..++..+|........+.           .+..+.+++...|+...++.++|.+..
T Consensus       223 ~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~y~  292 (472)
T 4g1t_A          223 REEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYR  292 (472)
T ss_dssp             C------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred             HhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHHHHHHHHH
Confidence            12234455677778888877877544332222           223334577788999999999998763

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=99.49  E-value=1e-13  Score=114.46  Aligned_cols=102  Identities=13%  Similarity=0.060  Sum_probs=69.3

Q ss_pred             HHHHHHHhCCCCHHHH-HHHHHHHHcCCHHHHHHHHHh---hCcCCcC----------CCCCHHHHHHHHHHHHHhCCCC
Q 019586           12 AYRRALSIAPDNNKMC-NLGICLMKQGRIGEAKETLRR---VKPAVAD----------GPRGVDSHLKAYERAQQMLKDL   77 (338)
Q Consensus        12 ~y~kALeldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k---~~p~~~d----------~lg~~deAi~~yekAL~l~Pd~   77 (338)
                      .|++++.++|++...+ ++|.++...|+|++|+..|++   ..|.++.          ..|++++|+.+|+++++++|++
T Consensus         6 ~l~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~   85 (142)
T 2xcb_A            6 TLAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINE   85 (142)
T ss_dssp             ---CCTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred             hHHHHHcCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCC
Confidence            3444444444444432 444444444444444444444   2222222          1444577888888899999999


Q ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCcc
Q 019586           78 ESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDH  113 (338)
Q Consensus        78 ~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~  113 (338)
                      +.+|+++|.+|..+|++++|+.+|+++++++|.++.
T Consensus        86 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~  121 (142)
T 2xcb_A           86 PRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPA  121 (142)
T ss_dssp             THHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCGG
T ss_pred             cHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcc
Confidence            999999999999999999999999999999998876

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.49  E-value=2.7e-13  Score=117.76  Aligned_cols=140  Identities=18%  Similarity=0.166  Sum_probs=117.7

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcCCHHHHHHHHHhh---CcCCcC----------CCCCHHHHHHHH
Q 019586            2 QQNNYIEAEDAYRRALSIAPDNNKMC-NLGICLMKQGRIGEAKETLRRV---KPAVAD----------GPRGVDSHLKAY   67 (338)
Q Consensus         2 q~g~~eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k~---~p~~~d----------~lg~~deAi~~y   67 (338)
                      ..|++++|+.+|+++++++|++...+ ++|.+|..+|++++|+..|+++   .|.++.          ..|++++|+..|
T Consensus        69 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~  148 (243)
T 2q7f_A           69 SVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYL  148 (243)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCHHHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHH
Confidence            46899999999999999999999977 9999999999999999999994   344333          289999999999


Q ss_pred             HHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCcccc---cchhhhcCccHHHHHhhhhcccCCCh
Q 019586           68 ERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDHIL---PTTNAIKTRDDFADENIDSNVDVNPI  141 (338)
Q Consensus        68 ekAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~~l---~~l~~~~~~~~~A~e~~~~al~~~P~  141 (338)
                      ++++++.|+...+++.+|.++...|++++|+.+|+++++.+|.+...+   +.+....++...|...+...+..+|.
T Consensus       149 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~  225 (243)
T 2q7f_A          149 QRAVELNENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPD  225 (243)
T ss_dssp             HHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTT
T ss_pred             HHHHHhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcc
Confidence            999999999999999999999999999999999999999999887632   22244556666666666665554444

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=99.49  E-value=5.6e-14  Score=130.22  Aligned_cols=110  Identities=13%  Similarity=0.061  Sum_probs=102.1

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcCCHHHHHHHHHhhCcCCcC-------------CCCCHHHHHHHH
Q 019586            2 QQNNYIEAEDAYRRALSIAPDNNKMC-NLGICLMKQGRIGEAKETLRRVKPAVAD-------------GPRGVDSHLKAY   67 (338)
Q Consensus         2 q~g~~eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k~~p~~~d-------------~lg~~deAi~~y   67 (338)
                      +.|++++|+..|+++++++|++..++ ++|.+|..+|++++|+..|+++...+++             ..++.++|+..|
T Consensus       129 ~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~~l~~~~~~~~a~~~l  208 (287)
T 3qou_A          129 QESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQIELLXQAADTPEIQQL  208 (287)
T ss_dssp             HTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred             hCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHHHHHhhcccCccHHHH
Confidence            47999999999999999999999977 9999999999999999999997665554             145778899999


Q ss_pred             HHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCC
Q 019586           68 ERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCK  111 (338)
Q Consensus        68 ekAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~  111 (338)
                      +++++++|+++.+++++|.+|...|++++|+.+|+++++.+|++
T Consensus       209 ~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~  252 (287)
T 3qou_A          209 QQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTA  252 (287)
T ss_dssp             HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTG
T ss_pred             HHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccc
Confidence            99999999999999999999999999999999999999999988

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=99.49  E-value=1.5e-13  Score=124.26  Aligned_cols=142  Identities=8%  Similarity=-0.024  Sum_probs=124.8

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcCCHHHHHHHHHhh---CcCCcC----------CCC-CHHHHHHH
Q 019586            2 QQNNYIEAEDAYRRALSIAPDNNKMC-NLGICLMKQGRIGEAKETLRRV---KPAVAD----------GPR-GVDSHLKA   66 (338)
Q Consensus         2 q~g~~eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k~---~p~~~d----------~lg-~~deAi~~   66 (338)
                      ..|+|++|+.+|+++++.+|.+...+ .++.++...|++++|+..++++   .|.++.          ..| ++++|+.+
T Consensus        34 ~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~  113 (330)
T 3hym_B           34 YNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVGCYYLMVGHKNEHARRY  113 (330)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHHHHHHHSCSCHHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhhhhHHHHHHH
Confidence            36899999999999999999998866 8999999999999999999994   444443          278 99999999


Q ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCcc---cccchhhhcCccHHHHHhhhhcccCCChhh
Q 019586           67 YERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDH---ILPTTNAIKTRDDFADENIDSNVDVNPIVL  143 (338)
Q Consensus        67 yekAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~---~l~~l~~~~~~~~~A~e~~~~al~~~P~~~  143 (338)
                      |+++++++|+++.+|..+|.++...|++++|+.+|++++++.|.+..   .++.+....++.+.|...+..++..+|...
T Consensus       114 ~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~  193 (330)
T 3hym_B          114 LSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPEDP  193 (330)
T ss_dssp             HHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCH
T ss_pred             HHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCCh
Confidence            99999999999999999999999999999999999999999999776   333345678888889999999998888743

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=99.49  E-value=1.3e-13  Score=112.80  Aligned_cols=88  Identities=16%  Similarity=0.183  Sum_probs=77.7

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcCCHHHHHHHHHhhCcCCcCCCCCHHHHHHHHHHHHHhCCCC---
Q 019586            2 QQNNYIEAEDAYRRALSIAPDNNKMC-NLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDL---   77 (338)
Q Consensus         2 q~g~~eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k~~p~~~d~lg~~deAi~~yekAL~l~Pd~---   77 (338)
                      ++|+|++|+.+|++||+++|++..+| ++|.+|..+|+|+                     +|+.+|++||+++|++   
T Consensus        20 ~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~---------------------~A~~~~~~al~~~~~~~~~   78 (127)
T 4gcn_A           20 KQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFA---------------------ECVQFCEKAVEVGRETRAD   78 (127)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH---------------------HHHHHHHHHHHHHHHTTCC
T ss_pred             HcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHH---------------------HHHHHHHHHHHhCcccchh
Confidence            47899999999999999999999977 9999999999994                     5555566688887765   


Q ss_pred             ----HHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCC
Q 019586           78 ----ESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPC  110 (338)
Q Consensus        78 ----~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~  110 (338)
                          +.+|+++|.++..+|++++|+.+|+++++..|+
T Consensus        79 ~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~~~  115 (127)
T 4gcn_A           79 YKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFRD  115 (127)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCC
T ss_pred             hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC
Confidence                368999999999999999999999999998875

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=99.49  E-value=1.7e-13  Score=115.08  Aligned_cols=91  Identities=20%  Similarity=0.146  Sum_probs=84.6

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcCCHHHHHHHHHhhCcCCcCCCCCHHHHHHHHHHHHHhCCCCHHH
Q 019586            2 QQNNYIEAEDAYRRALSIAPDNNKMC-NLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDLESE   80 (338)
Q Consensus         2 q~g~~eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k~~p~~~d~lg~~deAi~~yekAL~l~Pd~~~a   80 (338)
                      +.|+|++|+.+|+++++++|++..+| ++|.+|..+|+|                     ++|+.+|+++++++|+++.+
T Consensus        23 ~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~---------------------~~A~~~~~~al~~~p~~~~~   81 (164)
T 3sz7_A           23 ARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQH---------------------EKAAEDAELATVVDPKYSKA   81 (164)
T ss_dssp             HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCH---------------------HHHHHHHHHHHHHCTTCHHH
T ss_pred             HcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCH---------------------HHHHHHHHHHHHhCCCCHHH
Confidence            47899999999999999999999977 999999999999                     55666677799999999999


Q ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHccCCCCcc
Q 019586           81 MMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDH  113 (338)
Q Consensus        81 ~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~  113 (338)
                      |+++|.+|..+|++++|+.+|+++++++|++..
T Consensus        82 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~  114 (164)
T 3sz7_A           82 WSRLGLARFDMADYKGAKEAYEKGIEAEGNGGS  114 (164)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHSSSCC
T ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHHhCCCchH
Confidence            999999999999999999999999999999877

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.49  E-value=8.7e-13  Score=119.05  Aligned_cols=189  Identities=14%  Similarity=0.036  Sum_probs=139.3

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcCCHHHHHHHHHhh---CcCCcC----------------------
Q 019586            2 QQNNYIEAEDAYRRALSIAPDNNKMC-NLGICLMKQGRIGEAKETLRRV---KPAVAD----------------------   55 (338)
Q Consensus         2 q~g~~eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k~---~p~~~d----------------------   55 (338)
                      ..|++++|+.+|+++++++|++...+ .+|.+|...|++++|+..|+++   .|.+..                      
T Consensus        67 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  146 (327)
T 3cv0_A           67 ENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDF  146 (327)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTTTC--------------------C
T ss_pred             HcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhH
Confidence            36788888888888888888888866 8888888899999998888883   232221                      


Q ss_pred             ---CCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCccc---ccchhhhcCccHHHH
Q 019586           56 ---GPRGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDHI---LPTTNAIKTRDDFAD  129 (338)
Q Consensus        56 ---~lg~~deAi~~yekAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~~---l~~l~~~~~~~~~A~  129 (338)
                         ..|++++|+..|+++++..|+...++..+|.++...|++++|+.+|+++++++|.+...   ++.+....++.+.|.
T Consensus       147 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~  226 (327)
T 3cv0_A          147 FFAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEAL  226 (327)
T ss_dssp             CTTSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHH
Confidence               23577999999999999999999999999999999999999999999999999988763   333356778888898


Q ss_pred             HhhhhcccCCChhhhhhhh----hhhhcch-------HHHHHHhHh------------HHHHhhchhhhhhHhhhhhhhh
Q 019586          130 ENIDSNVDVNPIVLSKHRS----VKKLFPT-------ANAIKTQEN------------FADENINANIVVNQTVLAQQRG  186 (338)
Q Consensus       130 e~~~~al~~~P~~~~K~~~----~~kl~~~-------~~ai~~~~~------------~~e~y~nlg~~~~~~~~~d~r~  186 (338)
                      ..+..++..+|........    ......+       .+++...|+            ...++.++|.+.    ....+.
T Consensus       227 ~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~g~~  302 (327)
T 3cv0_A          227 DAYNRALDINPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLL----NVMNRP  302 (327)
T ss_dssp             HHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHH----HHTTCH
T ss_pred             HHHHHHHHcCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHH----HhcCCH
Confidence            8888888877764332211    1122222       335555677            777788888754    333444


Q ss_pred             hhhhcccc
Q 019586          187 VQQLAPFG  194 (338)
Q Consensus       187 ~~~~~~~~  194 (338)
                      ..+...+.
T Consensus       303 ~~A~~~~~  310 (327)
T 3cv0_A          303 DLVELTYA  310 (327)
T ss_dssp             HHHHHHTT
T ss_pred             HHHHHHHH
Confidence            44443333

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.48  E-value=1.4e-13  Score=120.02  Aligned_cols=140  Identities=14%  Similarity=0.119  Sum_probs=95.5

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCC-------HHHH-HHHHHHHHcCCHHHHHHHHHhhCcCCcC-----CCCCHHHHHHHHH
Q 019586            2 QQNNYIEAEDAYRRALSIAPDN-------NKMC-NLGICLMKQGRIGEAKETLRRVKPAVAD-----GPRGVDSHLKAYE   68 (338)
Q Consensus         2 q~g~~eeAi~~y~kALeldPd~-------a~a~-nLG~~y~~~G~~dEAi~~~~k~~p~~~d-----~lg~~deAi~~ye   68 (338)
                      ..|++++|+.+|+++++++|++       ...+ ++|.+|..+|++++|+.+|+++....+.     .+|++++|+..|+
T Consensus        50 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~  129 (258)
T 3uq3_A           50 EKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRTADILTKLRNAEKELKKAE  129 (258)
T ss_dssp             HTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
T ss_pred             HcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCchhHHHHHHhHHHHHHHHHH
Confidence            4689999999999999999876       5555 9999999999999999999995443332     2455666666666


Q ss_pred             HHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCcccc---cchhhhcCccHHHHHhhhhcccCCCh
Q 019586           69 RAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDHIL---PTTNAIKTRDDFADENIDSNVDVNPI  141 (338)
Q Consensus        69 kAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~~l---~~l~~~~~~~~~A~e~~~~al~~~P~  141 (338)
                      +++...|+.+.+|..+|.++...|++++|+.+|+++++++|.++..+   +.+....++.+.|...+..++..+|.
T Consensus       130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~  205 (258)
T 3uq3_A          130 AEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPN  205 (258)
T ss_dssp             HHHHCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             HHHHcCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHH
Confidence            66666666666666666666666666666666666666666655422   22234555555565555555555554

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=99.48  E-value=6.1e-13  Score=121.07  Aligned_cols=139  Identities=9%  Similarity=0.058  Sum_probs=78.5

Q ss_pred             CCCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcCCHHHHHHHHHhhCcCCc---C-----------------------
Q 019586            3 QNNYIEAEDAYRRALSIAPDNNKMC-NLGICLMKQGRIGEAKETLRRVKPAVA---D-----------------------   55 (338)
Q Consensus         3 ~g~~eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k~~p~~~---d-----------------------   55 (338)
                      .|++++|+.+|+++++++|++...+ .+|.+|...|++++|+..|+++....+   .                       
T Consensus        50 ~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~  129 (359)
T 3ieg_A           50 MGKSKAALPDLTKVIALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALD  129 (359)
T ss_dssp             HTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHH
Confidence            3555555555555555555555544 555555555555555555555333222   1                       


Q ss_pred             --CCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCccc---ccchhhhcCccHHHHH
Q 019586           56 --GPRGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDHI---LPTTNAIKTRDDFADE  130 (338)
Q Consensus        56 --~lg~~deAi~~yekAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~~---l~~l~~~~~~~~~A~e  130 (338)
                        ..|++++|+..|++++++.|+.+.++..+|.++...|++++|+.+|++++++.|.++..   ++.+....++.+.+..
T Consensus       130 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~  209 (359)
T 3ieg_A          130 AFDGADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLS  209 (359)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred             HHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence              14566666666666666666666666666666666666666666666666666665542   2222344555555555


Q ss_pred             hhhhcccCCCh
Q 019586          131 NIDSNVDVNPI  141 (338)
Q Consensus       131 ~~~~al~~~P~  141 (338)
                      .+..++..+|.
T Consensus       210 ~~~~a~~~~~~  220 (359)
T 3ieg_A          210 EVRECLKLDQD  220 (359)
T ss_dssp             HHHHHHHHCTT
T ss_pred             HHHHHHhhCcc
Confidence            55555555554

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.48  E-value=9.5e-13  Score=115.77  Aligned_cols=170  Identities=13%  Similarity=0.008  Sum_probs=122.7

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcCCHHHHHHHHHhhC---cCCcC----------CCCCHHHHHHHH
Q 019586            2 QQNNYIEAEDAYRRALSIAPDNNKMC-NLGICLMKQGRIGEAKETLRRVK---PAVAD----------GPRGVDSHLKAY   67 (338)
Q Consensus         2 q~g~~eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k~~---p~~~d----------~lg~~deAi~~y   67 (338)
                      ..|++++|+.+|+++++++|++...+ .+|.+|...|++++|+..|+++.   |..+.          ..|++++|+.+|
T Consensus        49 ~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~  128 (252)
T 2ho1_A           49 QRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRL  128 (252)
T ss_dssp             HTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHHhHHHHHHHHH
Confidence            36788888888888888888888866 88888888888888888888843   33332          278888888888


Q ss_pred             HHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCccc---ccchhhhcCccHHHHHhhhhcccCCChh
Q 019586           68 ERAQQ--MLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDHI---LPTTNAIKTRDDFADENIDSNVDVNPIV  142 (338)
Q Consensus        68 ekAL~--l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~~---l~~l~~~~~~~~~A~e~~~~al~~~P~~  142 (338)
                      +++++  ..|....+++.+|.++...|++++|+.+|+++++..|.+...   ++.+....++.+.|...+...+...|..
T Consensus       129 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~  208 (252)
T 2ho1_A          129 LEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQN  208 (252)
T ss_dssp             HHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCC
T ss_pred             HHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc
Confidence            88888  778888888888888888888888888888888888877652   2333566777778888887777777754


Q ss_pred             hhhhh----hhhhhcchHHHHHHhHhHHHHhhc
Q 019586          143 LSKHR----SVKKLFPTANAIKTQENFADENIN  171 (338)
Q Consensus       143 ~~K~~----~~~kl~~~~~ai~~~~~~~e~y~n  171 (338)
                      .....    ..........+.....++.+.+.+
T Consensus       209 ~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~  241 (252)
T 2ho1_A          209 ARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPG  241 (252)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCC
Confidence            33222    222344445565555555554433

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.48  E-value=4.3e-14  Score=146.96  Aligned_cols=140  Identities=9%  Similarity=-0.014  Sum_probs=121.3

Q ss_pred             CCCCCHHHHHHHHHHHH--------HhCCCCHHHH-HHHHHHHHcCCHHHHHHHHHhh---CcCCcC----------CCC
Q 019586            1 MQQNNYIEAEDAYRRAL--------SIAPDNNKMC-NLGICLMKQGRIGEAKETLRRV---KPAVAD----------GPR   58 (338)
Q Consensus         1 mq~g~~eeAi~~y~kAL--------eldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k~---~p~~~d----------~lg   58 (338)
                      +..|++++|+..|++++        +.+|++..++ ++|.+|..+|++++|+..|+++   .|.++.          .+|
T Consensus       402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g  481 (681)
T 2pzi_A          402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLTG  481 (681)
T ss_dssp             TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHT
T ss_pred             ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHcC
Confidence            35789999999999999        9999999977 9999999999999999999994   455544          278


Q ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCcccc---cchhhhcCccHHHHHhhhhc
Q 019586           59 GVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDHIL---PTTNAIKTRDDFADENIDSN  135 (338)
Q Consensus        59 ~~deAi~~yekAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~~l---~~l~~~~~~~~~A~e~~~~a  135 (338)
                      ++++|+..|++|++++|+++.+|+++|.+|..+|++++ +.+|+++++++|.+...+   +.+....++.+.|.+.+..+
T Consensus       482 ~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a  560 (681)
T 2pzi_A          482 DYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRTLDEV  560 (681)
T ss_dssp             CHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHTS
T ss_pred             CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHHhh
Confidence            99999999999999999999999999999999999999 999999999999988733   33466778888888888887


Q ss_pred             ccCCCh
Q 019586          136 VDVNPI  141 (338)
Q Consensus       136 l~~~P~  141 (338)
                      +..+|.
T Consensus       561 l~l~P~  566 (681)
T 2pzi_A          561 PPTSRH  566 (681)
T ss_dssp             CTTSTT
T ss_pred             cccCcc
Confidence            765554

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.47  E-value=4e-13  Score=114.75  Aligned_cols=139  Identities=17%  Similarity=0.098  Sum_probs=118.4

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcCCHHHHHHHHHhh---CcCCcC----------CC-CCHHHHHHH
Q 019586            2 QQNNYIEAEDAYRRALSIAPDNNKMC-NLGICLMKQGRIGEAKETLRRV---KPAVAD----------GP-RGVDSHLKA   66 (338)
Q Consensus         2 q~g~~eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k~---~p~~~d----------~l-g~~deAi~~   66 (338)
                      ..|++++|+.+|+++++++|++...+ .+|.+|...|++++|+.+|+++   .|..+.          .. |++++|+.+
T Consensus        20 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~   99 (225)
T 2vq2_A           20 RGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCGRLNRPAESMAY   99 (225)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCCHHHHHHH
T ss_pred             HHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCcHHHHHHH
Confidence            46899999999999999999999877 9999999999999999999994   444433          37 999999999


Q ss_pred             HHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCcccc---cchhhhcCccHHHHHhhhhcccCCC
Q 019586           67 YERAQQ--MLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDHIL---PTTNAIKTRDDFADENIDSNVDVNP  140 (338)
Q Consensus        67 yekAL~--l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~~l---~~l~~~~~~~~~A~e~~~~al~~~P  140 (338)
                      |+++++  ..|....+++++|.++...|++++|+.+|+++++..|.+...+   +.+....++.+.|...+...+..+|
T Consensus       100 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~  178 (225)
T 2vq2_A          100 FDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVE  178 (225)
T ss_dssp             HHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC
T ss_pred             HHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence            999999  6677789999999999999999999999999999999887632   3335567777778777777766555

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=99.47  E-value=6.7e-14  Score=134.69  Aligned_cols=193  Identities=11%  Similarity=-0.032  Sum_probs=141.6

Q ss_pred             CCCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcCCHHHHHHHHHhh---CcCCcCC----------------------
Q 019586            3 QNNYIEAEDAYRRALSIAPDNNKMC-NLGICLMKQGRIGEAKETLRRV---KPAVADG----------------------   56 (338)
Q Consensus         3 ~g~~eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k~---~p~~~d~----------------------   56 (338)
                      .|++++|+.+|++++.++|++...+ ++|.+|...|++++|+..|+++   .|.++..                      
T Consensus       226 ~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~y~~~~~~~~~~~~~~  305 (472)
T 4g1t_A          226 GEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENG  305 (472)
T ss_dssp             ----CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHC----
T ss_pred             hhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence            4678999999999999999999977 9999999999999999999994   4544331                      


Q ss_pred             -------CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCccc------ccch-hhhc
Q 019586           57 -------PRGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDHI------LPTT-NAIK  122 (338)
Q Consensus        57 -------lg~~deAi~~yekAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~~------l~~l-~~~~  122 (338)
                             ...+++|+..|+++++++|.+..+++++|.++..+|++++|+.+|+++++++|.+...      ++.+ ....
T Consensus       306 ~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~  385 (472)
T 4g1t_A          306 MYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQM  385 (472)
T ss_dssp             --CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTS
T ss_pred             HHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHC
Confidence                   1247889999999999999999999999999999999999999999999999876531      1111 2356


Q ss_pred             CccHHHHHhhhhcccCCChhhhhhhhhhhhcch-HHHHHHhHhHHHHhhchhhhhhHhhhhhhhhhhhhccccccCCC
Q 019586          123 TRDDFADENIDSNVDVNPIVLSKHRSVKKLFPT-ANAIKTQENFADENINANIVVNQTVLAQQRGVQQLAPFGNSWNI  199 (338)
Q Consensus       123 ~~~~~A~e~~~~al~~~P~~~~K~~~~~kl~~~-~~ai~~~~~~~e~y~nlg~~~~~~~~~d~r~~~~~~~~~~~~~~  199 (338)
                      +..+.|.+.+..++.++|...........+... ..++...|+..+++.++|.+.    ...++..+++..+..++.+
T Consensus       386 ~~~~~Ai~~y~kal~i~~~~~~~~~~~~~l~~~~~~~l~~~p~~~~~~~~LG~~~----~~~g~~~~A~~~y~kALe~  459 (472)
T 4g1t_A          386 KCEDKAIHHFIEGVKINQKSREKEKMKDKLQKIAKMRLSKNGADSEALHVLAFLQ----ELNEKMQQADEDSERGLES  459 (472)
T ss_dssp             SCHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHHHHHCC-CTTHHHHHHHHH----HHHHHCC------------
T ss_pred             CCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHH----HHcCCHHHHHHHHHHHHhc
Confidence            677889999999999999866544433333222 357788899999999999955    4556677888778887776

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=99.47  E-value=2e-13  Score=115.36  Aligned_cols=112  Identities=13%  Similarity=0.078  Sum_probs=97.4

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcCCHHHHHHHHHhh---CcCCcC-----------CCCCH--HHHH
Q 019586            2 QQNNYIEAEDAYRRALSIAPDNNKMC-NLGICLMKQGRIGEAKETLRRV---KPAVAD-----------GPRGV--DSHL   64 (338)
Q Consensus         2 q~g~~eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k~---~p~~~d-----------~lg~~--deAi   64 (338)
                      ..|++++|+..|+++++.+|++...+ .+|.+|...|++++|+.+|+++   .|.++.           ..|++  ++|+
T Consensus        22 ~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~A~  101 (177)
T 2e2e_A           22 SQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQTR  101 (177)
T ss_dssp             -----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHHHH
T ss_pred             hccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHHHH
Confidence            46889999999999999999999977 9999999999999999999993   444443           25787  9999


Q ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCcc
Q 019586           65 KAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDH  113 (338)
Q Consensus        65 ~~yekAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~  113 (338)
                      .+|+++++++|++..+++++|.+|..+|++++|+.+|+++++++|.+..
T Consensus       102 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~  150 (177)
T 2e2e_A          102 AMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRIN  150 (177)
T ss_dssp             HHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSC
T ss_pred             HHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCcc
Confidence            9999999999999999999999999999999999999999999998765

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.47  E-value=3.8e-13  Score=118.37  Aligned_cols=141  Identities=16%  Similarity=0.072  Sum_probs=121.5

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcCCHHHHHHHHHhhCc--CCcC-------------CCCCHHHHHH
Q 019586            2 QQNNYIEAEDAYRRALSIAPDNNKMC-NLGICLMKQGRIGEAKETLRRVKP--AVAD-------------GPRGVDSHLK   65 (338)
Q Consensus         2 q~g~~eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k~~p--~~~d-------------~lg~~deAi~   65 (338)
                      ..|++++|+.+|+++++++|++...+ ++|.+|...|++++|+.+|+++..  ..+.             ..|++++|+.
T Consensus        83 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~  162 (252)
T 2ho1_A           83 TEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKE  162 (252)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHH
Confidence            46899999999999999999998877 999999999999999999999665  4443             2789999999


Q ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCcccc---cchhhhcCccHHHHHhhhhcccCCChh
Q 019586           66 AYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDHIL---PTTNAIKTRDDFADENIDSNVDVNPIV  142 (338)
Q Consensus        66 ~yekAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~~l---~~l~~~~~~~~~A~e~~~~al~~~P~~  142 (338)
                      +|++++++.|+...++..+|.++..+|++++|+.+|+++++..|.+...+   ..+....++.+.+...+...+...|..
T Consensus       163 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~  242 (252)
T 2ho1_A          163 YFEKSLRLNRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGS  242 (252)
T ss_dssp             HHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTS
T ss_pred             HHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCC
Confidence            99999999999999999999999999999999999999999999877632   223456777777877777777666653

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.46  E-value=1.1e-13  Score=121.33  Aligned_cols=113  Identities=14%  Similarity=0.076  Sum_probs=103.2

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcCCHHHHHHHHHh---hCcCCcC-----------------CCCCH
Q 019586            2 QQNNYIEAEDAYRRALSIAPDNNKMC-NLGICLMKQGRIGEAKETLRR---VKPAVAD-----------------GPRGV   60 (338)
Q Consensus         2 q~g~~eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k---~~p~~~d-----------------~lg~~   60 (338)
                      ..|++++|+.+|+++++++|++..++ ++|.+|..+|++++|+..|++   +.|.++.                 ..|++
T Consensus        54 ~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~  133 (228)
T 4i17_A           54 NIKKYKEAADYFDIAIKKNYNLANAYIGKSAAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNI  133 (228)
T ss_dssp             HTTCHHHHHHHHHHHHHTTCSHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCH
T ss_pred             HhhcHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccH
Confidence            46899999999999999999999977 999999999999999999999   4566551                 27999


Q ss_pred             HHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHCCCH---------------------------HHHHHHHHHHHccCCCC
Q 019586           61 DSHLKAYERAQQMLKD--LESEMMNKGGDRVEQSRL---------------------------FDAFLGSSSIWQPQPCK  111 (338)
Q Consensus        61 deAi~~yekAL~l~Pd--~~~a~~nLG~~l~~lGr~---------------------------~eAi~~yekALkl~P~~  111 (338)
                      ++|+.+|+++++++|+  ++.+|+++|.+|..+|+.                           ++|+.+|+++++++|++
T Consensus       134 ~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~p~~  213 (228)
T 4i17_A          134 EKAEENYKHATDVTSKKWKTDALYSLGVLFYNNGADVLRKATPLASSNKEKYASEKAKADAAFKKAVDYLGEAVTLSPNR  213 (228)
T ss_dssp             HHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC
Confidence            9999999999999999  999999999999999998                           88999999999999988


Q ss_pred             ccc
Q 019586          112 DHI  114 (338)
Q Consensus       112 ~~~  114 (338)
                      ..+
T Consensus       214 ~~~  216 (228)
T 4i17_A          214 TEI  216 (228)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            763

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.46  E-value=1.9e-13  Score=112.83  Aligned_cols=139  Identities=13%  Similarity=0.095  Sum_probs=113.2

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcCCHHHHHHHHHhhC---cCCcC----------CCCCHHHHHHHH
Q 019586            2 QQNNYIEAEDAYRRALSIAPDNNKMC-NLGICLMKQGRIGEAKETLRRVK---PAVAD----------GPRGVDSHLKAY   67 (338)
Q Consensus         2 q~g~~eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k~~---p~~~d----------~lg~~deAi~~y   67 (338)
                      ..|++++|+.+|+++++.+|++...+ .+|.++...|++++|+.+|+++.   |..+.          ..|++++|+.+|
T Consensus        20 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~   99 (186)
T 3as5_A           20 KAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYVQVQKYDLAVPLL   99 (186)
T ss_dssp             HHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred             HhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHH
Confidence            35899999999999999999998866 99999999999999999999943   33333          268999999999


Q ss_pred             HHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCcccc---cchhhhcCccHHHHHhhhhcccCCC
Q 019586           68 ERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDHIL---PTTNAIKTRDDFADENIDSNVDVNP  140 (338)
Q Consensus        68 ekAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~~l---~~l~~~~~~~~~A~e~~~~al~~~P  140 (338)
                      ++++++.|+...++..+|.++...|++++|+.+|+++++..|.+...+   +.+....++.+.|...+...+..+|
T Consensus       100 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~  175 (186)
T 3as5_A          100 IKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKANELDE  175 (186)
T ss_dssp             HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Confidence            999999999999999999999999999999999999999999876522   2234455666666666655554333

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.45  E-value=3.5e-13  Score=117.52  Aligned_cols=185  Identities=13%  Similarity=0.101  Sum_probs=133.0

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcCCHHHHHHHHHh---hCcCCc-------C----------CCCCH
Q 019586            2 QQNNYIEAEDAYRRALSIAPDNNKMC-NLGICLMKQGRIGEAKETLRR---VKPAVA-------D----------GPRGV   60 (338)
Q Consensus         2 q~g~~eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k---~~p~~~-------d----------~lg~~   60 (338)
                      ..|+|++|+.+|+++++++ ++...+ ++|.+|..+|++++|+..|++   +.|...       .          ..|++
T Consensus        17 ~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~   95 (258)
T 3uq3_A           17 KARQFDEAIEHYNKAWELH-KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGDL   95 (258)
T ss_dssp             HTTCHHHHHHHHHHHHHHS-CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred             HhccHHHHHHHHHHHHHhh-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHHHHHHcccH
Confidence            4689999999999999999 777766 999999999999999999888   233331       1          27788


Q ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCcc---cccchhhhcCccHHHHHhhhhccc
Q 019586           61 DSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDH---ILPTTNAIKTRDDFADENIDSNVD  137 (338)
Q Consensus        61 deAi~~yekAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~---~l~~l~~~~~~~~~A~e~~~~al~  137 (338)
                      ++|+.+|++++++.|+        +.++..+|++++|+..|++++..+|.++.   .++.+....++.+.|...+..++.
T Consensus        96 ~~A~~~~~~a~~~~~~--------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~  167 (258)
T 3uq3_A           96 KKTIEYYQKSLTEHRT--------ADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIK  167 (258)
T ss_dssp             HHHHHHHHHHHHHCCC--------HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCch--------hHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence            8888888888888876        45677777788888888888888888766   333345678888999999999988


Q ss_pred             CCChhhhhh----hhhhhhcc-------hHHHHHHhHhHHHHhhchhhhhhHhhhhhhhhhhhhccccccCCC
Q 019586          138 VNPIVLSKH----RSVKKLFP-------TANAIKTQENFADENINANIVVNQTVLAQQRGVQQLAPFGNSWNI  199 (338)
Q Consensus       138 ~~P~~~~K~----~~~~kl~~-------~~~ai~~~~~~~e~y~nlg~~~~~~~~~d~r~~~~~~~~~~~~~~  199 (338)
                      .+|....-.    ........       +..++...|+..+++.++|.+.    ....++.+++..+...+.+
T Consensus       168 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~----~~~g~~~~A~~~~~~a~~~  236 (258)
T 3uq3_A          168 RAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQ----IAVKEYASALETLDAARTK  236 (258)
T ss_dssp             HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH----HHTTCHHHHHHHHHHHHHH
T ss_pred             cCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHH----HHHhhHHHHHHHHHHHHHh
Confidence            888743322    11222222       2346666788888899998844    4445555555444443333

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=99.45  E-value=2.4e-13  Score=136.56  Aligned_cols=140  Identities=10%  Similarity=-0.035  Sum_probs=95.5

Q ss_pred             CCCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcCCHHHHHHHHHhhCcCCcC-------------CCCCHHHHHHHHH
Q 019586            3 QNNYIEAEDAYRRALSIAPDNNKMC-NLGICLMKQGRIGEAKETLRRVKPAVAD-------------GPRGVDSHLKAYE   68 (338)
Q Consensus         3 ~g~~eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k~~p~~~d-------------~lg~~deAi~~ye   68 (338)
                      .|++++|+.+|+++++++|++..++ ++|.+|..+|++++|+.+|+++...+++             .+|++++|+.+|+
T Consensus         2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~   81 (568)
T 2vsy_A            2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQ   81 (568)
T ss_dssp             -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence            4788889999999999999888866 8999999999999999999884443333             2788999999999


Q ss_pred             HHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCccccc---chhhhc---CccHHHHHhhhhcccCCChh
Q 019586           69 RAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDHILP---TTNAIK---TRDDFADENIDSNVDVNPIV  142 (338)
Q Consensus        69 kAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~~l~---~l~~~~---~~~~~A~e~~~~al~~~P~~  142 (338)
                      ++++++|+++.+|+++|.+|..+|++++|+.+|+++++++|.+...+.   .+....   ++.+.+.+.+..++..+|..
T Consensus        82 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~p~~  161 (568)
T 2vsy_A           82 QASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGVGA  161 (568)
T ss_dssp             HHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHTCCC
T ss_pred             HHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcCCcc
Confidence            999999998889999999999999999999999999999888776332   224455   67777777777777777653

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=99.45  E-value=1.6e-13  Score=114.94  Aligned_cols=90  Identities=21%  Similarity=0.302  Sum_probs=82.1

Q ss_pred             CCCCHHHHHHHHHHHHHh------------------CCCCHHHH-HHHHHHHHcCCHHHHHHHHHhhCcCCcCCCCCHHH
Q 019586            2 QQNNYIEAEDAYRRALSI------------------APDNNKMC-NLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDS   62 (338)
Q Consensus         2 q~g~~eeAi~~y~kALel------------------dPd~a~a~-nLG~~y~~~G~~dEAi~~~~k~~p~~~d~lg~~de   62 (338)
                      +.|+|++|+.+|++|+.+                  +|.+..+| ++|.||..+|+|                     ++
T Consensus        23 ~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~---------------------~~   81 (162)
T 3rkv_A           23 VQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDL---------------------HE   81 (162)
T ss_dssp             HTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCH---------------------HH
T ss_pred             HcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcH---------------------HH
Confidence            479999999999999999                  66666666 999999999999                     55


Q ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCc
Q 019586           63 HLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKD  112 (338)
Q Consensus        63 Ai~~yekAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~  112 (338)
                      |+.+|+++|+++|+++.+|+++|.+|..+|++++|+.+|+++++++|.+.
T Consensus        82 A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~  131 (162)
T 3rkv_A           82 AEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAA  131 (162)
T ss_dssp             HHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGH
T ss_pred             HHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCH
Confidence            66667779999999999999999999999999999999999999999987

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.45  E-value=7.2e-13  Score=126.12  Aligned_cols=140  Identities=10%  Similarity=0.090  Sum_probs=97.7

Q ss_pred             CCCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcCCHHHHHHHHHhh---CcCCc---C--------------------
Q 019586            3 QNNYIEAEDAYRRALSIAPDNNKMC-NLGICLMKQGRIGEAKETLRRV---KPAVA---D--------------------   55 (338)
Q Consensus         3 ~g~~eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k~---~p~~~---d--------------------   55 (338)
                      .|++++|+.+|+++++++|++..++ ++|.+|..+|++++|+..|+++   .|.+.   .                    
T Consensus        73 ~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~  152 (450)
T 2y4t_A           73 MGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALN  152 (450)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            5677777777777777777777755 7777777777777777777773   23322   1                    


Q ss_pred             --CCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCcccc---cchhhhcCccHHHHH
Q 019586           56 --GPRGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDHIL---PTTNAIKTRDDFADE  130 (338)
Q Consensus        56 --~lg~~deAi~~yekAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~~l---~~l~~~~~~~~~A~e  130 (338)
                        ..|++++|+.+|++++++.|++..+++.+|.+|...|++++|+.+|+++++.+|.++..+   +.+....++.+.|..
T Consensus       153 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~  232 (450)
T 2y4t_A          153 AFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLS  232 (450)
T ss_dssp             HHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence              146777777777777777777777777777777777777777777777777777766522   223456667777777


Q ss_pred             hhhhcccCCChh
Q 019586          131 NIDSNVDVNPIV  142 (338)
Q Consensus       131 ~~~~al~~~P~~  142 (338)
                      .+...+..+|..
T Consensus       233 ~~~~~~~~~p~~  244 (450)
T 2y4t_A          233 EVRECLKLDQDH  244 (450)
T ss_dssp             HHHHHHHHCTTC
T ss_pred             HHHHHHHhCCCh
Confidence            777776666653

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=99.45  E-value=1.5e-13  Score=112.63  Aligned_cols=109  Identities=13%  Similarity=0.043  Sum_probs=89.0

Q ss_pred             HHHHHhCCCCHHHH-HHHHHHHHcCCHHHHHHHHHhhCcCCcCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC
Q 019586           14 RRALSIAPDNNKMC-NLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQS   92 (338)
Q Consensus        14 ~kALeldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k~~p~~~d~lg~~deAi~~yekAL~l~Pd~~~a~~nLG~~l~~lG   92 (338)
                      .++..++|+.++.+ ++|.+|..+|+|                     ++|+.+|++||+++|+++.+|+++|.+|..+|
T Consensus         3 ar~a~inP~~a~~~~~~G~~~~~~g~~---------------------~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~   61 (126)
T 4gco_A            3 ARLAYINPELAQEEKNKGNEYFKKGDY---------------------PTAMRHYNEAVKRDPENAILYSNRAACLTKLM   61 (126)
T ss_dssp             ----CCCHHHHHHHHHHHHHHHHTTCH---------------------HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred             hHHHHHCHHHHHHHHHHHHHHHHcCCH---------------------HHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhc
Confidence            35566899999977 999999999999                     55666667799999999999999999999999


Q ss_pred             CHHHHHHHHHHHHccCCCCcccc---cchhhhcCccHHHHHhhhhcccCCChhh
Q 019586           93 RLFDAFLGSSSIWQPQPCKDHIL---PTTNAIKTRDDFADENIDSNVDVNPIVL  143 (338)
Q Consensus        93 r~~eAi~~yekALkl~P~~~~~l---~~l~~~~~~~~~A~e~~~~al~~~P~~~  143 (338)
                      ++++|+.+|+++++++|.+...+   +.+....++.+.|.+.+..++.++|...
T Consensus        62 ~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~  115 (126)
T 4gco_A           62 EFQRALDDCDTCIRLDSKFIKGYIRKAACLVAMREWSKAQRAYEDALQVDPSNE  115 (126)
T ss_dssp             CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred             cHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcCCH
Confidence            99999999999999999998733   3345677777778887777776666533

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.43  E-value=6.2e-13  Score=123.95  Aligned_cols=134  Identities=10%  Similarity=0.017  Sum_probs=78.3

Q ss_pred             CCCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcCCHHHHHHHHHhh---CcCCcC------------CCCCHHHHHHH
Q 019586            3 QNNYIEAEDAYRRALSIAPDNNKMC-NLGICLMKQGRIGEAKETLRRV---KPAVAD------------GPRGVDSHLKA   66 (338)
Q Consensus         3 ~g~~eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k~---~p~~~d------------~lg~~deAi~~   66 (338)
                      .|++++|+.+|++     |++.+++ ++|.+|..+|++++|+..|+++   .|+...            ..|++++|+.+
T Consensus       114 ~g~~~~Al~~l~~-----~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~eA~~~  188 (291)
T 3mkr_A          114 DQNPDAALRTLHQ-----GDSLECMAMTVQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAYYI  188 (291)
T ss_dssp             TTCHHHHHHHHTT-----CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTHHHHHHHH
T ss_pred             CCCHHHHHHHHhC-----CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhCchHHHHHHHH
Confidence            3555555555554     4455544 5555566666666666666552   232210            13567777777


Q ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCcccccc---hhhhcCccHH-HHHhhhhcccCCCh
Q 019586           67 YERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDHILPT---TNAIKTRDDF-ADENIDSNVDVNPI  141 (338)
Q Consensus        67 yekAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~~l~~---l~~~~~~~~~-A~e~~~~al~~~P~  141 (338)
                      |+++++..|+++.+|+++|.++..+|++++|+.+|+++++++|+++..+..   +....|+... +.+.+...+..+|.
T Consensus       189 ~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~  267 (291)
T 3mkr_A          189 FQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRS  267 (291)
T ss_dssp             HHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCC
Confidence            777777777777777777777777777777777777777777777663322   2334454443 34455555555554

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=99.43  E-value=4.1e-13  Score=130.49  Aligned_cols=192  Identities=10%  Similarity=0.062  Sum_probs=121.1

Q ss_pred             CCCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcCCHHHHHHHHHhh---CcCCcC----------CCCCHHHHHHHHH
Q 019586            3 QNNYIEAEDAYRRALSIAPDNNKMC-NLGICLMKQGRIGEAKETLRRV---KPAVAD----------GPRGVDSHLKAYE   68 (338)
Q Consensus         3 ~g~~eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k~---~p~~~d----------~lg~~deAi~~ye   68 (338)
                      .|++++|+.+|++++.++|+ ...+ .+|.+|...|++++|+.+|+++   .|.++.          ..|++++|+..|+
T Consensus       256 ~~~~~~A~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~  334 (537)
T 3fp2_A          256 KNNLLDAQVLLQESINLHPT-PNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQ  334 (537)
T ss_dssp             TTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             cccHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence            46777777777777777777 5544 7777777777777777777773   333333          2677777777777


Q ss_pred             HHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCcc---cccchhhhcCccHHHHHhhhhcccCCChhhhh
Q 019586           69 RAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDH---ILPTTNAIKTRDDFADENIDSNVDVNPIVLSK  145 (338)
Q Consensus        69 kAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~---~l~~l~~~~~~~~~A~e~~~~al~~~P~~~~K  145 (338)
                      +++++.|++..+|..+|.++..+|++++|+.+|+++++.+|.++.   .++.+....++.+.|...+..++..+|.....
T Consensus       335 ~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~  414 (537)
T 3fp2_A          335 KAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKI  414 (537)
T ss_dssp             HHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSC
T ss_pred             HHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhh
Confidence            777777777777777777777777777777777777777777665   22333455666666666666665555432211


Q ss_pred             ---------------------------hhhhhhhcchHHHHHHhHhHHHHhhchhhhhhHhhhhhhhhhhhhccccccCC
Q 019586          146 ---------------------------HRSVKKLFPTANAIKTQENFADENINANIVVNQTVLAQQRGVQQLAPFGNSWN  198 (338)
Q Consensus       146 ---------------------------~~~~~kl~~~~~ai~~~~~~~e~y~nlg~~~~~~~~~d~r~~~~~~~~~~~~~  198 (338)
                                                 +..-..+..+.+++...|+..+++.++|.+.    ....+..+++..+...+.
T Consensus       415 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~----~~~g~~~~A~~~~~~al~  490 (537)
T 3fp2_A          415 HVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLK----LQMEKIDEAIELFEDSAI  490 (537)
T ss_dssp             SSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH----HHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHH----HHhccHHHHHHHHHHHHH
Confidence                                       1111122223345666777777888888744    455555566555555555


Q ss_pred             C
Q 019586          199 I  199 (338)
Q Consensus       199 ~  199 (338)
                      +
T Consensus       491 ~  491 (537)
T 3fp2_A          491 L  491 (537)
T ss_dssp             H
T ss_pred             h
Confidence            4

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=99.43  E-value=2.5e-12  Score=100.07  Aligned_cols=109  Identities=25%  Similarity=0.329  Sum_probs=98.2

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcCCHHHHHHHHHhh---CcCCcC----------CCCCHHHHHHHH
Q 019586            2 QQNNYIEAEDAYRRALSIAPDNNKMC-NLGICLMKQGRIGEAKETLRRV---KPAVAD----------GPRGVDSHLKAY   67 (338)
Q Consensus         2 q~g~~eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k~---~p~~~d----------~lg~~deAi~~y   67 (338)
                      ..|++++|+.+|+++++.+|++...+ ++|.++...|++++|+.+|+++   .|..+.          ..|++++|+.+|
T Consensus        13 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~   92 (136)
T 2fo7_A           13 KQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYY   92 (136)
T ss_dssp             HHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred             HcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHhcCHHHHHHHH
Confidence            35899999999999999999998876 9999999999999999999994   343332          378999999999


Q ss_pred             HHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCC
Q 019586           68 ERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPC  110 (338)
Q Consensus        68 ekAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~  110 (338)
                      ++++++.|....++..+|.++...|++++|+.+|++++.++|.
T Consensus        93 ~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~  135 (136)
T 2fo7_A           93 QKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR  135 (136)
T ss_dssp             HHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTT
T ss_pred             HHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCC
Confidence            9999999999999999999999999999999999999998886

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.43  E-value=2.2e-13  Score=125.93  Aligned_cols=193  Identities=10%  Similarity=0.025  Sum_probs=119.5

Q ss_pred             CCCHHHHHH-HHHHHHHhCCCCHH-----HHHHHHHHHHcCCHHHHHHHHHhhCcCCcC-------------CCCCHHHH
Q 019586            3 QNNYIEAED-AYRRALSIAPDNNK-----MCNLGICLMKQGRIGEAKETLRRVKPAVAD-------------GPRGVDSH   63 (338)
Q Consensus         3 ~g~~eeAi~-~y~kALeldPd~a~-----a~nLG~~y~~~G~~dEAi~~~~k~~p~~~d-------------~lg~~deA   63 (338)
                      .|+|++|+. .|.+++.+.|+++.     .+++|.+|...|++++|+..|+++...++.             ..|++++|
T Consensus        38 ~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A  117 (368)
T 1fch_A           38 LSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLA  117 (368)
T ss_dssp             --------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHH
Confidence            577888888 88888888877642     448888888888888888888884433333             27788888


Q ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCccccc----------------ch--hhhcCcc
Q 019586           64 LKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDHILP----------------TT--NAIKTRD  125 (338)
Q Consensus        64 i~~yekAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~~l~----------------~l--~~~~~~~  125 (338)
                      +.+|++++++.|+++.+|+.+|.++..+|++++|+.+|++++++.|.+.....                .+  ....++.
T Consensus       118 ~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  197 (368)
T 1fch_A          118 ISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLF  197 (368)
T ss_dssp             HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHH
T ss_pred             HHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHhhcccH
Confidence            88888888888888888888888888888888888888888888887765332                11  1244555


Q ss_pred             HHHHHhhhhcccCCCh--hhhh----hhhhhhhcch-------HHHHHHhHhHHHHhhchhhhhhHhhhhhhhhhhhhcc
Q 019586          126 DFADENIDSNVDVNPI--VLSK----HRSVKKLFPT-------ANAIKTQENFADENINANIVVNQTVLAQQRGVQQLAP  192 (338)
Q Consensus       126 ~~A~e~~~~al~~~P~--~~~K----~~~~~kl~~~-------~~ai~~~~~~~e~y~nlg~~~~~~~~~d~r~~~~~~~  192 (338)
                      +.|...+...+..+|.  ....    .........+       .+++...|+...++.++|.+.    ....++.+++..
T Consensus       198 ~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~----~~~g~~~~A~~~  273 (368)
T 1fch_A          198 LEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATL----ANGNQSEEAVAA  273 (368)
T ss_dssp             HHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH----HHTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHH----HHcCCHHHHHHH
Confidence            5666666666666665  1111    1111122222       234445566666667776633    344455555554


Q ss_pred             ccccCCC
Q 019586          193 FGNSWNI  199 (338)
Q Consensus       193 ~~~~~~~  199 (338)
                      +...+.+
T Consensus       274 ~~~al~~  280 (368)
T 1fch_A          274 YRRALEL  280 (368)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHh
Confidence            4444444

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.43  E-value=4.1e-13  Score=127.80  Aligned_cols=194  Identities=10%  Similarity=0.057  Sum_probs=150.1

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCCH---HHH-------------HHHHHHHHcCCHHHHHHHHHhh---CcCCcC-------
Q 019586            2 QQNNYIEAEDAYRRALSIAPDNN---KMC-------------NLGICLMKQGRIGEAKETLRRV---KPAVAD-------   55 (338)
Q Consensus         2 q~g~~eeAi~~y~kALeldPd~a---~a~-------------nLG~~y~~~G~~dEAi~~~~k~---~p~~~d-------   55 (338)
                      ..|++++|+.+|+++++++|++.   ..+             .+|.++...|++++|+..|+++   .|.++.       
T Consensus       106 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~  185 (450)
T 2y4t_A          106 KQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAE  185 (450)
T ss_dssp             HTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHH
Confidence            46899999999999999999987   543             4478899999999999999994   444433       


Q ss_pred             ---CCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCcccc---------------cc
Q 019586           56 ---GPRGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDHIL---------------PT  117 (338)
Q Consensus        56 ---~lg~~deAi~~yekAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~~l---------------~~  117 (338)
                         ..|++++|+.+|++++++.|+++.+|+.+|.+|...|++++|+.+|+++++++|.+...+               +.
T Consensus       186 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~  265 (450)
T 2y4t_A          186 CFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAE  265 (450)
T ss_dssp             HHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHH
Confidence               289999999999999999999999999999999999999999999999999999987632               33


Q ss_pred             hhhhcCccHHHHHhhhhcccCCChhhh--------hhhhhhhhcchH-------HHHHHhHhHHHHhhchhhhhhHhhhh
Q 019586          118 TNAIKTRDDFADENIDSNVDVNPIVLS--------KHRSVKKLFPTA-------NAIKTQENFADENINANIVVNQTVLA  182 (338)
Q Consensus       118 l~~~~~~~~~A~e~~~~al~~~P~~~~--------K~~~~~kl~~~~-------~ai~~~~~~~e~y~nlg~~~~~~~~~  182 (338)
                      .....++.+.|...+...+..+|....        ..........+.       .++...|+..+++.++|.+    +..
T Consensus       266 ~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~----~~~  341 (450)
T 2y4t_A          266 ELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEA----YLI  341 (450)
T ss_dssp             HHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH----HHH
T ss_pred             HHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHH----HHH
Confidence            355677888888888888887776311        112222333333       3555677788888888884    455


Q ss_pred             hhhhhhhhccccccCCC
Q 019586          183 QQRGVQQLAPFGNSWNI  199 (338)
Q Consensus       183 d~r~~~~~~~~~~~~~~  199 (338)
                      ..++.+++..+...+.+
T Consensus       342 ~~~~~~A~~~~~~al~~  358 (450)
T 2y4t_A          342 EEMYDEAIQDYETAQEH  358 (450)
T ss_dssp             TTCHHHHHHHHHHHHTT
T ss_pred             hcCHHHHHHHHHHHHHh
Confidence            66666776666666655

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=99.43  E-value=8.7e-13  Score=120.02  Aligned_cols=143  Identities=10%  Similarity=0.056  Sum_probs=124.3

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcCCHHHHHHHHHhh---CcCCcC----------CCCCHHHHHHHH
Q 019586            2 QQNNYIEAEDAYRRALSIAPDNNKMC-NLGICLMKQGRIGEAKETLRRV---KPAVAD----------GPRGVDSHLKAY   67 (338)
Q Consensus         2 q~g~~eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k~---~p~~~d----------~lg~~deAi~~y   67 (338)
                      ..|+|++|+.+|++++..+|++...+ ++|.+|...|++++|+..|+++   .|.++.          ..|++++|+..|
T Consensus        15 ~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~   94 (359)
T 3ieg_A           15 AAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLLKQGKLDEAEDDF   94 (359)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHcCChHHHHHHH
Confidence            47999999999999999999999977 9999999999999999999994   444443          278999999999


Q ss_pred             HHHHHhCC---CCHHHHHHH------------HHHHHHCCCHHHHHHHHHHHHccCCCCcccc---cchhhhcCccHHHH
Q 019586           68 ERAQQMLK---DLESEMMNK------------GGDRVEQSRLFDAFLGSSSIWQPQPCKDHIL---PTTNAIKTRDDFAD  129 (338)
Q Consensus        68 ekAL~l~P---d~~~a~~nL------------G~~l~~lGr~~eAi~~yekALkl~P~~~~~l---~~l~~~~~~~~~A~  129 (338)
                      ++++++.|   +...++..+            |.++...|++++|+.+|+++++..|.++..+   +.+....++.+.|.
T Consensus        95 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~  174 (359)
T 3ieg_A           95 KKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAI  174 (359)
T ss_dssp             HHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHCCCHHHHH
Confidence            99999999   888888887            7899999999999999999999999987733   33356788888899


Q ss_pred             HhhhhcccCCChhhh
Q 019586          130 ENIDSNVDVNPIVLS  144 (338)
Q Consensus       130 e~~~~al~~~P~~~~  144 (338)
                      ..+...+..+|....
T Consensus       175 ~~~~~~~~~~~~~~~  189 (359)
T 3ieg_A          175 SDLKAASKLKSDNTE  189 (359)
T ss_dssp             HHHHHHHTTCSCCHH
T ss_pred             HHHHHHHHhCCCCHH
Confidence            999888888886443

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.42  E-value=1.6e-12  Score=110.97  Aligned_cols=112  Identities=15%  Similarity=0.121  Sum_probs=102.8

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHc-CCHHHHHHHHHhhCc--CCcC-------------CCCCHHHHH
Q 019586            2 QQNNYIEAEDAYRRALSIAPDNNKMC-NLGICLMKQ-GRIGEAKETLRRVKP--AVAD-------------GPRGVDSHL   64 (338)
Q Consensus         2 q~g~~eeAi~~y~kALeldPd~a~a~-nLG~~y~~~-G~~dEAi~~~~k~~p--~~~d-------------~lg~~deAi   64 (338)
                      ..|++++|+.+|++++.++|++...+ ++|.+|... |++++|+.+|+++..  .++.             ..|++++|+
T Consensus        54 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~  133 (225)
T 2vq2_A           54 YLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAE  133 (225)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHH
Confidence            46899999999999999999999977 999999999 999999999999544  4433             278999999


Q ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCC-CCcc
Q 019586           65 KAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQP-CKDH  113 (338)
Q Consensus        65 ~~yekAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P-~~~~  113 (338)
                      .+|+++++..|++..++..+|.++...|++++|+.+|+++++..| .+..
T Consensus       134 ~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~  183 (225)
T 2vq2_A          134 AYLKRSLAAQPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQAD  183 (225)
T ss_dssp             HHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHH
T ss_pred             HHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHH
Confidence            999999999999999999999999999999999999999999999 7665

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.42  E-value=2.2e-12  Score=106.37  Aligned_cols=112  Identities=15%  Similarity=0.102  Sum_probs=102.7

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcCCHHHHHHHHHhhC---cCCcC----------CCCCHHHHHHHH
Q 019586            2 QQNNYIEAEDAYRRALSIAPDNNKMC-NLGICLMKQGRIGEAKETLRRVK---PAVAD----------GPRGVDSHLKAY   67 (338)
Q Consensus         2 q~g~~eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k~~---p~~~d----------~lg~~deAi~~y   67 (338)
                      ..|++++|+.+|+++++++|++...+ ++|.+|...|++++|+.+|+++.   |.++.          ..|++++|+.+|
T Consensus        54 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~  133 (186)
T 3as5_A           54 KTGAVDRGTELLERSLADAPDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSF  133 (186)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHH
Confidence            46899999999999999999999977 99999999999999999999943   44333          288999999999


Q ss_pred             HHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCcc
Q 019586           68 ERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDH  113 (338)
Q Consensus        68 ekAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~  113 (338)
                      +++++..|+.+.++..+|.++..+|++++|+.+|+++++++|.+..
T Consensus       134 ~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~  179 (186)
T 3as5_A          134 KIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKANELDEGASV  179 (186)
T ss_dssp             HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCCCG
T ss_pred             HHHHhcCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchh
Confidence            9999999999999999999999999999999999999999998765

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=99.41  E-value=1.6e-13  Score=117.40  Aligned_cols=86  Identities=5%  Similarity=-0.217  Sum_probs=78.3

Q ss_pred             CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCcccc---cchhhhcCccHHHHHhhh
Q 019586           57 PRGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDHIL---PTTNAIKTRDDFADENID  133 (338)
Q Consensus        57 lg~~deAi~~yekAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~~l---~~l~~~~~~~~~A~e~~~  133 (338)
                      .|++++|+.+|+++++++|+++.+|+++|.+|..+|++++|+.+|+++++++|+++..+   +.+....++.+.|...+.
T Consensus        49 ~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~~~~lg~~~eA~~~~~  128 (151)
T 3gyz_A           49 KGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQLRLKAPLKAKECFE  128 (151)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            79999999999999999999999999999999999999999999999999999998843   344678899999999999


Q ss_pred             hcccCCChh
Q 019586          134 SNVDVNPIV  142 (338)
Q Consensus       134 ~al~~~P~~  142 (338)
                      .++...|..
T Consensus       129 ~al~l~~~~  137 (151)
T 3gyz_A          129 LVIQHSNDE  137 (151)
T ss_dssp             HHHHHCCCH
T ss_pred             HHHHhCCCH
Confidence            988877764

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=99.41  E-value=1.7e-13  Score=109.48  Aligned_cols=91  Identities=10%  Similarity=-0.013  Sum_probs=78.9

Q ss_pred             CCCCHHHHHHHHHHHHHh---CCCCHHHH-HHHHHHHHcCCHHHHHHHHHhhCcCCcCCCCCHHHHHHHHHHHHHhCCCC
Q 019586            2 QQNNYIEAEDAYRRALSI---APDNNKMC-NLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDL   77 (338)
Q Consensus         2 q~g~~eeAi~~y~kALel---dPd~a~a~-nLG~~y~~~G~~dEAi~~~~k~~p~~~d~lg~~deAi~~yekAL~l~Pd~   77 (338)
                      ..|++++|+.+|++++++   +|++..++ ++|.+|..+|++                     ++|+.+|+++++++|++
T Consensus         2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~---------------------~~A~~~~~~al~~~p~~   60 (117)
T 3k9i_A            2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEY---------------------RKAEAVLANGVKQFPNH   60 (117)
T ss_dssp             -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCH---------------------HHHHHHHHHHHHHCTTC
T ss_pred             CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCH---------------------HHHHHHHHHHHHhCCCc
Confidence            578999999999999999   57777766 999999999999                     55666667799999999


Q ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCcc
Q 019586           78 ESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDH  113 (338)
Q Consensus        78 ~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~  113 (338)
                      +.+++++|.++..+|++++|+.+|+++++..|.++.
T Consensus        61 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~   96 (117)
T 3k9i_A           61 QALRVFYAMVLYNLGRYEQGVELLLKIIAETSDDET   96 (117)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHH
T ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHH
Confidence            999999999999999999999999999999998876

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=99.40  E-value=6.7e-13  Score=122.67  Aligned_cols=142  Identities=11%  Similarity=0.062  Sum_probs=112.3

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCC------HHHH-HHHHHHHHcCCHHHHHHHHHhhCcCCc---C----------------
Q 019586            2 QQNNYIEAEDAYRRALSIAPDN------NKMC-NLGICLMKQGRIGEAKETLRRVKPAVA---D----------------   55 (338)
Q Consensus         2 q~g~~eeAi~~y~kALeldPd~------a~a~-nLG~~y~~~G~~dEAi~~~~k~~p~~~---d----------------   55 (338)
                      ..|+|++|+.+|++|+++.+..      +..| ++|.+|..+|++++|+.+|+++...++   +                
T Consensus        49 ~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~  128 (292)
T 1qqe_A           49 LRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILE  128 (292)
T ss_dssp             HTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence            3689999999999999985422      3344 999999999999999999999432221   1                


Q ss_pred             CC-CCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCcccc----------cch
Q 019586           56 GP-RGVDSHLKAYERAQQMLKDL------ESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDHIL----------PTT  118 (338)
Q Consensus        56 ~l-g~~deAi~~yekAL~l~Pd~------~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~~l----------~~l  118 (338)
                      .. |++++|+.+|++|+++.|..      ..++.++|.+|..+|++++|+.+|++++++.|.+....          +.+
T Consensus       129 ~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~  208 (292)
T 1qqe_A          129 NDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLC  208 (292)
T ss_dssp             HTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHH
T ss_pred             HhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHH
Confidence            24 99999999999999998864      56799999999999999999999999999999876531          222


Q ss_pred             hhhcCccHHHHHhhhhcccCCChhh
Q 019586          119 NAIKTRDDFADENIDSNVDVNPIVL  143 (338)
Q Consensus       119 ~~~~~~~~~A~e~~~~al~~~P~~~  143 (338)
                      ....++...|...+..++.++|...
T Consensus       209 ~~~~g~~~~A~~~~~~al~l~p~~~  233 (292)
T 1qqe_A          209 QLAATDAVAAARTLQEGQSEDPNFA  233 (292)
T ss_dssp             HHHTTCHHHHHHHHHGGGCC-----
T ss_pred             HHHcCCHHHHHHHHHHHHhhCCCCC
Confidence            4567788888999999988888643

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=99.40  E-value=1.8e-12  Score=128.17  Aligned_cols=136  Identities=13%  Similarity=0.097  Sum_probs=72.2

Q ss_pred             CCCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcCCHHHHHHHHHhh---CcCCcC----------CCCCHHHHHHHHH
Q 019586            3 QNNYIEAEDAYRRALSIAPDNNKMC-NLGICLMKQGRIGEAKETLRRV---KPAVAD----------GPRGVDSHLKAYE   68 (338)
Q Consensus         3 ~g~~eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k~---~p~~~d----------~lg~~deAi~~ye   68 (338)
                      .|++++|+..|++++...|++...+ .+|.+|...|++++|+..|+++   .|.+..          ..|++++|+..|+
T Consensus       352 ~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~  431 (597)
T 2xpi_A          352 SGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYT  431 (597)
T ss_dssp             HTCHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred             hCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            3555555555555555555555544 5555555556666665555552   233222          1455555555555


Q ss_pred             HHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCcccc---cchhhhcCccHHHHHhhhhcccC
Q 019586           69 RAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDHIL---PTTNAIKTRDDFADENIDSNVDV  138 (338)
Q Consensus        69 kAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~~l---~~l~~~~~~~~~A~e~~~~al~~  138 (338)
                      +++++.|++..+|+.+|.+|...|++++|+.+|++++++.|.++..+   +.+....++.+.|.+.+...+..
T Consensus       432 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  504 (597)
T 2xpi_A          432 TAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLL  504 (597)
T ss_dssp             HHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHhCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence            55555555555555555555555555555555555555555554422   12234445555555555444433

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=99.38  E-value=7.2e-12  Score=121.69  Aligned_cols=173  Identities=11%  Similarity=0.040  Sum_probs=137.2

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcCCHHHHHHHHHhh---CcCCcC----------CCCCHHHHHHHH
Q 019586            2 QQNNYIEAEDAYRRALSIAPDNNKMC-NLGICLMKQGRIGEAKETLRRV---KPAVAD----------GPRGVDSHLKAY   67 (338)
Q Consensus         2 q~g~~eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k~---~p~~~d----------~lg~~deAi~~y   67 (338)
                      ..|++++|+.+|+++++++|++...+ ++|.+|...|++++|+..|+++   .|.++.          ..|++++|+.+|
T Consensus       288 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~  367 (537)
T 3fp2_A          288 DKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFF  367 (537)
T ss_dssp             CSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            57899999999999999999999977 9999999999999999999994   454443          289999999999


Q ss_pred             HHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCcccccch---------hhhc----------CccHHH
Q 019586           68 ERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDHILPTT---------NAIK----------TRDDFA  128 (338)
Q Consensus        68 ekAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~~l~~l---------~~~~----------~~~~~A  128 (338)
                      ++++++.|+++.++.++|.++...|++++|+.+|++++++.|.+......+         ....          ++.+.|
T Consensus       368 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A  447 (537)
T 3fp2_A          368 NETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAA  447 (537)
T ss_dssp             HHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHH
T ss_pred             HHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHH
Confidence            999999999999999999999999999999999999999999877643322         2333          777888


Q ss_pred             HHhhhhcccCCChhhhh----hhhhhhhcchHHHHHHhHhHHHHhhchhh
Q 019586          129 DENIDSNVDVNPIVLSK----HRSVKKLFPTANAIKTQENFADENINANI  174 (338)
Q Consensus       129 ~e~~~~al~~~P~~~~K----~~~~~kl~~~~~ai~~~~~~~e~y~nlg~  174 (338)
                      ...+..++..+|....-    .........+..|+....+.++...+...
T Consensus       448 ~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~  497 (537)
T 3fp2_A          448 IKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILARTMDE  497 (537)
T ss_dssp             HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CHH
T ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHH
Confidence            88999888888864432    22233444555566555555554444333

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=99.38  E-value=2.3e-12  Score=103.34  Aligned_cols=90  Identities=18%  Similarity=0.192  Sum_probs=81.1

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcCCHHHHHHHHHhhCcCCcCCCCCHHHHHHHHHHHHHhCCCCHHH
Q 019586            2 QQNNYIEAEDAYRRALSIAPDNNKMC-NLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDLESE   80 (338)
Q Consensus         2 q~g~~eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k~~p~~~d~lg~~deAi~~yekAL~l~Pd~~~a   80 (338)
                      ..|+|++|+.+|++++.++|++..++ ++|.+|..+|++                     ++|+.+|+++++++|+++.+
T Consensus        21 ~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~---------------------~~A~~~~~~al~~~p~~~~~   79 (137)
T 3q49_B           21 VGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQP---------------------EQALADCRRALELDGQSVKA   79 (137)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH---------------------HHHHHHHHHHHHHCTTCHHH
T ss_pred             HhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCH---------------------HHHHHHHHHHHHhCchhHHH
Confidence            46889999999999999999998876 999999999998                     55666677799999999999


Q ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHccCCCCc
Q 019586           81 MMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKD  112 (338)
Q Consensus        81 ~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~  112 (338)
                      |+++|.++..+|++++|+.+|+++++++|.+.
T Consensus        80 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~  111 (137)
T 3q49_B           80 HFFLGQCQLEMESYDEAIANLQRAYSLAKEQR  111 (137)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHHHChhHH
Confidence            99999999999999999999999999999843

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=99.37  E-value=5.8e-12  Score=116.42  Aligned_cols=94  Identities=17%  Similarity=0.169  Sum_probs=85.2

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcCCHHHHHHHHHhhCcCCcCCCCCHHHHHHHHHHHHHhCCCCHHH
Q 019586            2 QQNNYIEAEDAYRRALSIAPDNNKMC-NLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDLESE   80 (338)
Q Consensus         2 q~g~~eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k~~p~~~d~lg~~deAi~~yekAL~l~Pd~~~a   80 (338)
                      ..|+|++|+.+|++|++++|++..++ ++|.+|..+|++                     ++|+..|+++++++|++..+
T Consensus        16 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~---------------------~~A~~~~~~al~~~p~~~~~   74 (281)
T 2c2l_A           16 VGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQP---------------------EQALADCRRALELDGQSVKA   74 (281)
T ss_dssp             HTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCH---------------------HHHHHHHHHHTTSCTTCHHH
T ss_pred             HcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCH---------------------HHHHHHHHHHHHhCCCCHHH
Confidence            46899999999999999999999977 999999999999                     55666667799999999999


Q ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHccCCCCccccc
Q 019586           81 MMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDHILP  116 (338)
Q Consensus        81 ~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~~l~  116 (338)
                      |+++|.+|..+|++++|+.+|+++++++|++...+.
T Consensus        75 ~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~  110 (281)
T 2c2l_A           75 HFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFG  110 (281)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCC
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhhHH
Confidence            999999999999999999999999999998865443

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.37  E-value=2.6e-12  Score=113.99  Aligned_cols=111  Identities=14%  Similarity=0.054  Sum_probs=92.9

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCCHH----HH-HHHHHHHHcCCHHHHHHHHHh---hCcCCcC----------CCCCHHHH
Q 019586            2 QQNNYIEAEDAYRRALSIAPDNNK----MC-NLGICLMKQGRIGEAKETLRR---VKPAVAD----------GPRGVDSH   63 (338)
Q Consensus         2 q~g~~eeAi~~y~kALeldPd~a~----a~-nLG~~y~~~G~~dEAi~~~~k---~~p~~~d----------~lg~~deA   63 (338)
                      ..|++++|+.+|+++++ .|.+..    .+ ++|.+|..+|++++|+.+|++   ..|.++.          ..|++++|
T Consensus        49 ~~~~~~~A~~~~~~a~~-~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A  127 (272)
T 3u4t_A           49 ELAKYDLAQKDIETYFS-KVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLA  127 (272)
T ss_dssp             HTTCHHHHHHHHHHHHT-TSCTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHH
T ss_pred             HHhhHHHHHHHHHHHHh-ccCchhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHH
Confidence            46899999999999999 444333    34 999999999999999999999   4454444          28899999


Q ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCcc
Q 019586           64 LKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDH  113 (338)
Q Consensus        64 i~~yekAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~  113 (338)
                      +.+|+++++++|+.+.+|+++|...+..+++++|+.+|+++++++|.+..
T Consensus       128 ~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~  177 (272)
T 3u4t_A          128 IQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSFVKVLELKPNIYI  177 (272)
T ss_dssp             HHHHGGGCCSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHH
T ss_pred             HHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccchH
Confidence            99999999999999999999995555667999999999999999998865

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.37  E-value=1.5e-12  Score=117.44  Aligned_cols=110  Identities=22%  Similarity=0.205  Sum_probs=100.6

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcCCHHHHHHHHHhh---CcCCcC----------CCCCHHHHHHHH
Q 019586            2 QQNNYIEAEDAYRRALSIAPDNNKMC-NLGICLMKQGRIGEAKETLRRV---KPAVAD----------GPRGVDSHLKAY   67 (338)
Q Consensus         2 q~g~~eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k~---~p~~~d----------~lg~~deAi~~y   67 (338)
                      ..|++++|+.+|+++++.+|++...+ .+|.+|...|++++|+.+|+++   .|.++.          ..|++++|+.+|
T Consensus       150 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~  229 (327)
T 3cv0_A          150 APNEYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAY  229 (327)
T ss_dssp             SHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            35788999999999999999999877 9999999999999999999994   444433          288999999999


Q ss_pred             HHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCC
Q 019586           68 ERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCK  111 (338)
Q Consensus        68 ekAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~  111 (338)
                      ++++++.|+...+|..+|.++..+|++++|+.+|++++++.|..
T Consensus       230 ~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~  273 (327)
T 3cv0_A          230 NRALDINPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGG  273 (327)
T ss_dssp             HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTS
T ss_pred             HHHHHcCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcc
Confidence            99999999999999999999999999999999999999999983

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=99.37  E-value=2.1e-13  Score=114.58  Aligned_cols=88  Identities=9%  Similarity=-0.038  Sum_probs=77.4

Q ss_pred             HHHHHHHHcCCHHHHHHHHHhhCcCCcC-------------CCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCH
Q 019586           28 NLGICLMKQGRIGEAKETLRRVKPAVAD-------------GPRGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRL   94 (338)
Q Consensus        28 nLG~~y~~~G~~dEAi~~~~k~~p~~~d-------------~lg~~deAi~~yekAL~l~Pd~~~a~~nLG~~l~~lGr~   94 (338)
                      +||.++..+|++++|+..|+++.+..++             ..|++++|+.+|+++++++|+++.+|+++|.+|..+|++
T Consensus         2 ~LG~~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~   81 (150)
T 4ga2_A            2 PLGSMRRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENT   81 (150)
T ss_dssp             -----CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred             HhHHHHHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCch
Confidence            5899999999999999999997776654             279999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHccCCCCcccc
Q 019586           95 FDAFLGSSSIWQPQPCKDHIL  115 (338)
Q Consensus        95 ~eAi~~yekALkl~P~~~~~l  115 (338)
                      ++|+.+|+++++++|+++..+
T Consensus        82 ~~A~~~~~~al~~~p~~~~~~  102 (150)
T 4ga2_A           82 DKAVECYRRSVELNPTQKDLV  102 (150)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHH
T ss_pred             HHHHHHHHHHHHhCCCCHHHH
Confidence            999999999999999998743

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=99.37  E-value=7.5e-12  Score=96.02  Aligned_cols=91  Identities=14%  Similarity=0.122  Sum_probs=83.5

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcCCHHHHHHHHHhhCcCCcCCCCCHHHHHHHHHHHHHhCCCCHHH
Q 019586            2 QQNNYIEAEDAYRRALSIAPDNNKMC-NLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDLESE   80 (338)
Q Consensus         2 q~g~~eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k~~p~~~d~lg~~deAi~~yekAL~l~Pd~~~a   80 (338)
                      ..|++++|+.+|++++..+|++...+ ++|.+|..+|++                     ++|+.+|++++++.|+++.+
T Consensus        16 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~---------------------~~A~~~~~~~~~~~~~~~~~   74 (118)
T 1elw_A           16 SVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDY---------------------QKAYEDGCKTVDLKPDWGKG   74 (118)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCH---------------------HHHHHHHHHHHHHCTTCHHH
T ss_pred             HcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccH---------------------HHHHHHHHHHHHhCcccHHH
Confidence            46899999999999999999999977 999999999999                     55666667799999999999


Q ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHccCCCCcc
Q 019586           81 MMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDH  113 (338)
Q Consensus        81 ~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~  113 (338)
                      ++++|.++..+|++++|+.+|+++++++|.++.
T Consensus        75 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~  107 (118)
T 1elw_A           75 YSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQ  107 (118)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHH
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHH
Confidence            999999999999999999999999999998866

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.36  E-value=4e-13  Score=139.69  Aligned_cols=113  Identities=9%  Similarity=-0.004  Sum_probs=104.4

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcCCHHHHHHHHHh---hCcCCcC----------CCCCHHHHHHHH
Q 019586            2 QQNNYIEAEDAYRRALSIAPDNNKMC-NLGICLMKQGRIGEAKETLRR---VKPAVAD----------GPRGVDSHLKAY   67 (338)
Q Consensus         2 q~g~~eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k---~~p~~~d----------~lg~~deAi~~y   67 (338)
                      +.|++++|+..|+++++++|++..+| ++|.+|..+|++++|+..|++   +.|.++.          .+|++++ +.+|
T Consensus       445 ~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~  523 (681)
T 2pzi_A          445 DLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLTGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFY  523 (681)
T ss_dssp             HHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHH
T ss_pred             hcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHH
Confidence            46899999999999999999999977 999999999999999999999   5566655          2789999 9999


Q ss_pred             HHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCcccc
Q 019586           68 ERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDHIL  115 (338)
Q Consensus        68 ekAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~~l  115 (338)
                      ++|++++|++..+|+++|.+|..+|++++|+.+|+++++++|.+...+
T Consensus       524 ~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~  571 (681)
T 2pzi_A          524 QTVWSTNDGVISAAFGLARARSAEGDRVGAVRTLDEVPPTSRHFTTAR  571 (681)
T ss_dssp             HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHTSCTTSTTHHHHH
T ss_pred             HHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHHhhcccCcccHHHH
Confidence            999999999999999999999999999999999999999999987633

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.36  E-value=1.9e-11  Score=107.96  Aligned_cols=139  Identities=14%  Similarity=-0.004  Sum_probs=113.0

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcCCHHHHHHHHHhh---CcCCcC----------CCCCHHHHHHHH
Q 019586            2 QQNNYIEAEDAYRRALSIAPDNNKMC-NLGICLMKQGRIGEAKETLRRV---KPAVAD----------GPRGVDSHLKAY   67 (338)
Q Consensus         2 q~g~~eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k~---~p~~~d----------~lg~~deAi~~y   67 (338)
                      ..|++++|+.+|+++++++|++...+ ++|.+|...|++++|+.+|+++   .|.++.          ..|++++|+.+|
T Consensus        55 ~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~  134 (275)
T 1xnf_A           55 SLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDL  134 (275)
T ss_dssp             HTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHH
Confidence            46899999999999999999999977 9999999999999999999994   454443          289999999999


Q ss_pred             HHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCcccccch--hhhcCccHHHHHhhhhcccCCCh
Q 019586           68 ERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDHILPTT--NAIKTRDDFADENIDSNVDVNPI  141 (338)
Q Consensus        68 ekAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~~l~~l--~~~~~~~~~A~e~~~~al~~~P~  141 (338)
                      ++++++.|++...+..++.. ...|++++|+.+|++++...|.+...+...  ....+....+...+...+..+|.
T Consensus       135 ~~a~~~~~~~~~~~~~~~~~-~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~  209 (275)
T 1xnf_A          135 LAFYQDDPNDPFRSLWLYLA-EQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGNISEQTLMERLKADATDNTS  209 (275)
T ss_dssp             HHHHHHCTTCHHHHHHHHHH-HHHHCHHHHHHHHHHHHHHSCCCSTHHHHHHHHTTSSCHHHHHHHHHHHCCSHHH
T ss_pred             HHHHHhCCCChHHHHHHHHH-HHhcCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhcCHHHHHHHHHHHhccccc
Confidence            99999999999777766644 667999999999999999999876532221  33444445567777777766664

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=99.36  E-value=7.7e-12  Score=95.32  Aligned_cols=90  Identities=16%  Similarity=0.241  Sum_probs=82.1

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcCCHHHHHHHHHhhCcCCcCCCCCHHHHHHHHHHHHHhCCC--CH
Q 019586            2 QQNNYIEAEDAYRRALSIAPDNNKMC-NLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKD--LE   78 (338)
Q Consensus         2 q~g~~eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k~~p~~~d~lg~~deAi~~yekAL~l~Pd--~~   78 (338)
                      ..|++++|+.+|+++++++|++...+ ++|.+|..+|++                     ++|+.+|++++++.|+  ..
T Consensus        18 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~---------------------~~A~~~~~~a~~~~~~~~~~   76 (112)
T 2kck_A           18 DAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERY---------------------EEAVDCYNYVINVIEDEYNK   76 (112)
T ss_dssp             SSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCH---------------------HHHHHHHHHHHHTSCCTTCH
T ss_pred             HhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCH---------------------HHHHHHHHHHHHhCcccchH
Confidence            57899999999999999999999877 999999999999                     5566666779999999  99


Q ss_pred             HHHHHHHHHHHHC-CCHHHHHHHHHHHHccCCCCc
Q 019586           79 SEMMNKGGDRVEQ-SRLFDAFLGSSSIWQPQPCKD  112 (338)
Q Consensus        79 ~a~~nLG~~l~~l-Gr~~eAi~~yekALkl~P~~~  112 (338)
                      .+|+++|.++..+ |++++|+.+|++++...|.++
T Consensus        77 ~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~p~~~  111 (112)
T 2kck_A           77 DVWAAKADALRYIEGKEVEAEIAEARAKLEHHHHH  111 (112)
T ss_dssp             HHHHHHHHHHTTCSSCSHHHHHHHHHHGGGCCCCC
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHhhcccCCC
Confidence            9999999999999 999999999999999999764

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=99.35  E-value=5.4e-13  Score=112.15  Aligned_cols=85  Identities=6%  Similarity=-0.158  Sum_probs=75.7

Q ss_pred             CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCcccc---cchhhhcCccHHHHHhhh
Q 019586           57 PRGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDHIL---PTTNAIKTRDDFADENID  133 (338)
Q Consensus        57 lg~~deAi~~yekAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~~l---~~l~~~~~~~~~A~e~~~  133 (338)
                      .|++++|+..|++++.++|+++.+|+++|.++..+|++++|+.+|+++++++|+++..+   +.+....++.+.|...+.
T Consensus        34 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~~A~~~~~  113 (148)
T 2vgx_A           34 SGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQXGELAEAESGLF  113 (148)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             cCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHH
Confidence            68999999999999999999999999999999999999999999999999999998733   334667888888888888


Q ss_pred             hcccCCCh
Q 019586          134 SNVDVNPI  141 (338)
Q Consensus       134 ~al~~~P~  141 (338)
                      .++..+|.
T Consensus       114 ~al~~~p~  121 (148)
T 2vgx_A          114 LAQELIAN  121 (148)
T ss_dssp             HHHHHHTT
T ss_pred             HHHHHCcC
Confidence            88776654

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=99.35  E-value=2.5e-12  Score=113.97  Aligned_cols=140  Identities=9%  Similarity=0.090  Sum_probs=113.6

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCCH---HHH-HHHHHHHHcCCHHHHHHHHHh---hCcCCcC-------------------
Q 019586            2 QQNNYIEAEDAYRRALSIAPDNN---KMC-NLGICLMKQGRIGEAKETLRR---VKPAVAD-------------------   55 (338)
Q Consensus         2 q~g~~eeAi~~y~kALeldPd~a---~a~-nLG~~y~~~G~~dEAi~~~~k---~~p~~~d-------------------   55 (338)
                      +.|+|++|+..|+++++..|++.   .++ ++|.+|..+|+|++|+..|++   ..|.++.                   
T Consensus        16 ~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~g~~~~~~~~~~   95 (225)
T 2yhc_A           16 QDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSA   95 (225)
T ss_dssp             HHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHC--
T ss_pred             HcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHHHHHHHhhhhhh
Confidence            46899999999999999999864   344 999999999999999999999   4555543                   


Q ss_pred             ------------CCCCHHHHHHHHHHHHHhCCCCHHHH-----------------HHHHHHHHHCCCHHHHHHHHHHHHc
Q 019586           56 ------------GPRGVDSHLKAYERAQQMLKDLESEM-----------------MNKGGDRVEQSRLFDAFLGSSSIWQ  106 (338)
Q Consensus        56 ------------~lg~~deAi~~yekAL~l~Pd~~~a~-----------------~nLG~~l~~lGr~~eAi~~yekALk  106 (338)
                                  ..|++++|+..|+++++..|+...++                 +.+|.+|..+|++.+|+..|+++++
T Consensus        96 ~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~  175 (225)
T 2yhc_A           96 LQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLR  175 (225)
T ss_dssp             ------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             hhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHH
Confidence                        14689999999999999999987554                 6789999999999999999999999


Q ss_pred             cCCCCcc------cccchhhhcCccHHHHHhhhhcccCCCh
Q 019586          107 PQPCKDH------ILPTTNAIKTRDDFADENIDSNVDVNPI  141 (338)
Q Consensus       107 l~P~~~~------~l~~l~~~~~~~~~A~e~~~~al~~~P~  141 (338)
                      ..|+++.      .++.+....++.+.|.+.+.......|.
T Consensus       176 ~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~  216 (225)
T 2yhc_A          176 DYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSN  216 (225)
T ss_dssp             HSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSC
T ss_pred             HCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCC
Confidence            9999763      2233355677777777777665555554

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.35  E-value=1.1e-12  Score=130.33  Aligned_cols=171  Identities=12%  Similarity=0.016  Sum_probs=137.5

Q ss_pred             CHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcCCH-HHHHHHHHh---hCcCCcC----------CCCCHHHHHHHHHH
Q 019586            5 NYIEAEDAYRRALSIAPDNNKMC-NLGICLMKQGRI-GEAKETLRR---VKPAVAD----------GPRGVDSHLKAYER   69 (338)
Q Consensus         5 ~~eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G~~-dEAi~~~~k---~~p~~~d----------~lg~~deAi~~yek   69 (338)
                      ++++|+..+.+++...|+.+.++ ++|.+|..+|+| ++|+.+|++   +.|.+++          ..|++++|+.+|++
T Consensus        83 ~~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~  162 (474)
T 4abn_A           83 EMEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSG  162 (474)
T ss_dssp             HHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            46788888999888899999977 999999999999 999999999   4555544          27899999999999


Q ss_pred             HHHhCCCCHHHHHHHHHHHHHC---------CCHHHHHHHHHHHHccCCCCcccccch---hhhc--------CccHHHH
Q 019586           70 AQQMLKDLESEMMNKGGDRVEQ---------SRLFDAFLGSSSIWQPQPCKDHILPTT---NAIK--------TRDDFAD  129 (338)
Q Consensus        70 AL~l~Pd~~~a~~nLG~~l~~l---------Gr~~eAi~~yekALkl~P~~~~~l~~l---~~~~--------~~~~~A~  129 (338)
                      |++++|+ ..+|.++|.+|..+         |++++|+.+|+++++++|.++..+..+   ....        ++.+.|.
T Consensus       163 al~~~p~-~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~  241 (474)
T 4abn_A          163 ALTHCKN-KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQAL  241 (474)
T ss_dssp             HHTTCCC-HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred             HHhhCCC-HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHHHHH
Confidence            9999999 79999999999999         999999999999999999988744332   3444        7788889


Q ss_pred             HhhhhcccCCC---hhhhhhh----hhhh-------hcchHHHHHHhHhHHHHhhchhhhh
Q 019586          130 ENIDSNVDVNP---IVLSKHR----SVKK-------LFPTANAIKTQENFADENINANIVV  176 (338)
Q Consensus       130 e~~~~al~~~P---~~~~K~~----~~~k-------l~~~~~ai~~~~~~~e~y~nlg~~~  176 (338)
                      ..+..++..+|   ....-..    ....       +..+.+++...|+..+++.+++.+.
T Consensus       242 ~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~  302 (474)
T 4abn_A          242 SAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLL  302 (474)
T ss_dssp             HHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            99999998888   4332211    1112       2233446677788888888888865

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=99.35  E-value=5.7e-13  Score=128.14  Aligned_cols=137  Identities=11%  Similarity=0.073  Sum_probs=82.5

Q ss_pred             CCCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcCCHHHHHHHHHhhCcCCcC-------------CCCCHHHHHHHHH
Q 019586            3 QNNYIEAEDAYRRALSIAPDNNKMC-NLGICLMKQGRIGEAKETLRRVKPAVAD-------------GPRGVDSHLKAYE   68 (338)
Q Consensus         3 ~g~~eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k~~p~~~d-------------~lg~~deAi~~ye   68 (338)
                      .|++++|+.+|+++++.+|+ ...+ ++|.+|...|++++|+..|+++...++.             ..|++++|+.+|+
T Consensus       250 ~~~~~~A~~~~~~~l~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~  328 (514)
T 2gw1_A          250 KNDPLGAHEDIKKAIELFPR-VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFD  328 (514)
T ss_dssp             SSCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTTHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHhhCcc-HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence            46667777777777777666 5544 6666676677777776666663322222             1566666666666


Q ss_pred             HHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCcccc---cchhhhcCccHHHHHhhhhcccCCC
Q 019586           69 RAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDHIL---PTTNAIKTRDDFADENIDSNVDVNP  140 (338)
Q Consensus        69 kAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~~l---~~l~~~~~~~~~A~e~~~~al~~~P  140 (338)
                      +++++.|++..++..+|.++...|++++|+.+|+++++..|.++..+   +.+....++.+.|...+..++..+|
T Consensus       329 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~  403 (514)
T 2gw1_A          329 KAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELEN  403 (514)
T ss_dssp             HHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhh
Confidence            66666666666666666666666666666666666666666655422   2223445555555555555544443

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=99.34  E-value=6e-12  Score=108.34  Aligned_cols=107  Identities=16%  Similarity=0.160  Sum_probs=68.6

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcCCHHHHHHHHHhh---CcCCcC----------CCCCHHHHHHHH
Q 019586            2 QQNNYIEAEDAYRRALSIAPDNNKMC-NLGICLMKQGRIGEAKETLRRV---KPAVAD----------GPRGVDSHLKAY   67 (338)
Q Consensus         2 q~g~~eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k~---~p~~~d----------~lg~~deAi~~y   67 (338)
                      ..|+|++|+.+|++++  +| ++..+ ++|.+|..+|++++|+.+|+++   .|.++.          ..|++++|+.+|
T Consensus        18 ~~~~~~~A~~~~~~a~--~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~   94 (213)
T 1hh8_A           18 DKKDWKGALDAFSAVQ--DP-HSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDL   94 (213)
T ss_dssp             HTTCHHHHHHHHHTSS--SC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HhCCHHHHHHHHHHHc--CC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcccHHHHHHHH
Confidence            3577888888888874  44 44544 8888888888887777777662   233322          156666666666


Q ss_pred             HHHHHhCCCCH----------------HHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCC
Q 019586           68 ERAQQMLKDLE----------------SEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCK  111 (338)
Q Consensus        68 ekAL~l~Pd~~----------------~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~  111 (338)
                      ++++++.|++.                .+|+++|.+|..+|++++|+.+|+++++++|.+
T Consensus        95 ~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~  154 (213)
T 1hh8_A           95 KEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP  154 (213)
T ss_dssp             HHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred             HHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCccc
Confidence            66666555544                666666666666666666666666666666654

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=99.32  E-value=1.1e-11  Score=98.28  Aligned_cols=91  Identities=11%  Similarity=0.121  Sum_probs=81.9

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCCH---HHH-HHHHHHHHcCCHHHHHHHHHhhCcCCcCCCCCHHHHHHHHHHHHHhCCCC
Q 019586            2 QQNNYIEAEDAYRRALSIAPDNN---KMC-NLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDL   77 (338)
Q Consensus         2 q~g~~eeAi~~y~kALeldPd~a---~a~-nLG~~y~~~G~~dEAi~~~~k~~p~~~d~lg~~deAi~~yekAL~l~Pd~   77 (338)
                      ..|+|++|+..|+++++.+|++.   .++ ++|.+|..+|++                     ++|+.+|+++++..|++
T Consensus        14 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~---------------------~~A~~~~~~~~~~~p~~   72 (129)
T 2xev_A           14 KNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNF---------------------QLAEAQFRDLVSRYPTH   72 (129)
T ss_dssp             HTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCH---------------------HHHHHHHHHHHHHCTTS
T ss_pred             HhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccH---------------------HHHHHHHHHHHHHCCCC
Confidence            47899999999999999999988   444 999999999999                     55666667799999999


Q ss_pred             ---HHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCcc
Q 019586           78 ---ESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDH  113 (338)
Q Consensus        78 ---~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~  113 (338)
                         +.+++++|.++..+|++++|+.+|+++++..|+++.
T Consensus        73 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~  111 (129)
T 2xev_A           73 DKAAGGLLKLGLSQYGEGKNTEAQQTLQQVATQYPGSDA  111 (129)
T ss_dssp             TTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTSHH
T ss_pred             cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCChH
Confidence               899999999999999999999999999999998765

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=99.32  E-value=9.3e-12  Score=123.03  Aligned_cols=175  Identities=8%  Similarity=-0.057  Sum_probs=138.9

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcCCHHHHHHHHHhhC---cCCcC----------CCCCHHHHHHHH
Q 019586            2 QQNNYIEAEDAYRRALSIAPDNNKMC-NLGICLMKQGRIGEAKETLRRVK---PAVAD----------GPRGVDSHLKAY   67 (338)
Q Consensus         2 q~g~~eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k~~---p~~~d----------~lg~~deAi~~y   67 (338)
                      +.|++++|+.+|+++++++|++...| .+|.+|...|++++|+..|+++.   |.+..          ..|++++|+.+|
T Consensus       385 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~  464 (597)
T 2xpi_A          385 CVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYL  464 (597)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred             HhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHHHHHH
Confidence            47999999999999999999999877 99999999999999999999943   33332          278999999999


Q ss_pred             HHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcc------CCCC-cc---cccchhhhcCccHHHHHhhhhccc
Q 019586           68 ERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQP------QPCK-DH---ILPTTNAIKTRDDFADENIDSNVD  137 (338)
Q Consensus        68 ekAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl------~P~~-~~---~l~~l~~~~~~~~~A~e~~~~al~  137 (338)
                      ++++++.|+++.+|+.+|.+|...|++++|+.+|++++++      +|.+ ..   .++.+....++.+.|.+.+...+.
T Consensus       465 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  544 (597)
T 2xpi_A          465 QSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLL  544 (597)
T ss_dssp             HHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999998      4543 22   223336688889999999998888


Q ss_pred             CCChhhhhh----hhhhhhcc-------hHHHHHHhHhHHHHhhchhhhh
Q 019586          138 VNPIVLSKH----RSVKKLFP-------TANAIKTQENFADENINANIVV  176 (338)
Q Consensus       138 ~~P~~~~K~----~~~~kl~~-------~~~ai~~~~~~~e~y~nlg~~~  176 (338)
                      .+|....-.    ........       +.+++...|+..+++.+++.++
T Consensus       545 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~  594 (597)
T 2xpi_A          545 LSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMASDLLKRAL  594 (597)
T ss_dssp             HSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTT
T ss_pred             hCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHH
Confidence            887533221    11222222       3346666777777787777754

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=99.32  E-value=8.1e-12  Score=115.34  Aligned_cols=142  Identities=11%  Similarity=0.012  Sum_probs=105.9

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCC------HHHH-HHHHHHHHc-CCHHHHHHHHHhhC---cCCcC---------------
Q 019586            2 QQNNYIEAEDAYRRALSIAPDN------NKMC-NLGICLMKQ-GRIGEAKETLRRVK---PAVAD---------------   55 (338)
Q Consensus         2 q~g~~eeAi~~y~kALeldPd~------a~a~-nLG~~y~~~-G~~dEAi~~~~k~~---p~~~d---------------   55 (338)
                      .+|++++|+.+|++|+++.+..      +..+ ++|.+|..+ |++++|+.+|+++.   |....               
T Consensus        89 ~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~  168 (292)
T 1qqe_A           89 SGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLK  168 (292)
T ss_dssp             HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHH
Confidence            4689999999999999998754      2244 999999996 99999999999933   32211               


Q ss_pred             -CCCCHHHHHHHHHHHHHhCCCCHH-------HHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCccccc-----ch----
Q 019586           56 -GPRGVDSHLKAYERAQQMLKDLES-------EMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDHILP-----TT----  118 (338)
Q Consensus        56 -~lg~~deAi~~yekAL~l~Pd~~~-------a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~~l~-----~l----  118 (338)
                       .+|++++|+.+|++++++.|+...       +|+++|.++..+|++++|+.+|+++++++|.......     .+    
T Consensus       169 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~  248 (292)
T 1qqe_A          169 ALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAV  248 (292)
T ss_dssp             HHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHH
T ss_pred             HHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHH
Confidence             279999999999999999988653       6899999999999999999999999999998765211     11    


Q ss_pred             -hhhcCccHHHHHhhhhcccCCChhh
Q 019586          119 -NAIKTRDDFADENIDSNVDVNPIVL  143 (338)
Q Consensus       119 -~~~~~~~~~A~e~~~~al~~~P~~~  143 (338)
                       ....+....+...+...+.++|...
T Consensus       249 ~~~~~~~~~~A~~~~~~~~~l~~~~~  274 (292)
T 1qqe_A          249 NEGDSEQLSEHCKEFDNFMRLDKWKI  274 (292)
T ss_dssp             HTTCTTTHHHHHHHHTTSSCCCHHHH
T ss_pred             HcCCHHHHHHHHHHhccCCccHHHHH
Confidence             0123445556777777777777643

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=99.31  E-value=7.2e-12  Score=98.66  Aligned_cols=91  Identities=18%  Similarity=0.172  Sum_probs=78.2

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcCCHHHHHHHHHhhCcCCcCCCCCHHHHHHHHHHHHHhCCCCHHH
Q 019586            2 QQNNYIEAEDAYRRALSIAPDNNKMC-NLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDLESE   80 (338)
Q Consensus         2 q~g~~eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k~~p~~~d~lg~~deAi~~yekAL~l~Pd~~~a   80 (338)
                      ..|++++|+.+|++++.++|++...+ ++|.+|..+|++                     ++|+.+|++++++.|+++.+
T Consensus        28 ~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~---------------------~~A~~~~~~a~~~~~~~~~~   86 (133)
T 2lni_A           28 QKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEF---------------------QLALKDCEECIQLEPTFIKG   86 (133)
T ss_dssp             HTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCH---------------------HHHHHHHHHHHHHCTTCHHH
T ss_pred             HcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccH---------------------HHHHHHHHHHHHhCCCchHH
Confidence            35778888888888888888777765 888888888877                     66677777799999999999


Q ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHccCCCCcc
Q 019586           81 MMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDH  113 (338)
Q Consensus        81 ~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~  113 (338)
                      ++++|.++..+|++++|+.+|+++++++|.+..
T Consensus        87 ~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~  119 (133)
T 2lni_A           87 YTRKAAALEAMKDYTKAMDVYQKALDLDSSCKE  119 (133)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGTH
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHHhCCCchH
Confidence            999999999999999999999999999998765

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=99.31  E-value=4.2e-12  Score=117.73  Aligned_cols=135  Identities=10%  Similarity=-0.018  Sum_probs=86.7

Q ss_pred             CCHHHHHHHHHHHHH-hCCCCHHHH-HHHHHHHHcCCHHHHHHHHHhh---CcCCcC-----------CCCCHHHHHHHH
Q 019586            4 NNYIEAEDAYRRALS-IAPDNNKMC-NLGICLMKQGRIGEAKETLRRV---KPAVAD-----------GPRGVDSHLKAY   67 (338)
Q Consensus         4 g~~eeAi~~y~kALe-ldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k~---~p~~~d-----------~lg~~deAi~~y   67 (338)
                      +++++|+..|++|++ ++|++..+| ++|.++..+|++++|+..|+++   .|.++.           ..|++++|+..|
T Consensus        78 ~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~  157 (308)
T 2ond_A           78 LFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIF  157 (308)
T ss_dssp             HHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred             cchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHH
Confidence            456777777777777 577777666 7777777777777777777773   333332           145777777777


Q ss_pred             HHHHHhCCCCHHHHHHHHHHHHH-CCCHHHHHHHHHHHHccCCCCccccc---chhhhcCccHHHHHhhhhcccC
Q 019586           68 ERAQQMLKDLESEMMNKGGDRVE-QSRLFDAFLGSSSIWQPQPCKDHILP---TTNAIKTRDDFADENIDSNVDV  138 (338)
Q Consensus        68 ekAL~l~Pd~~~a~~nLG~~l~~-lGr~~eAi~~yekALkl~P~~~~~l~---~l~~~~~~~~~A~e~~~~al~~  138 (338)
                      ++|+++.|....+|...+.+... .|++++|+.+|+++++++|.++.++.   .+....++.+.+...+..++..
T Consensus       158 ~~a~~~~p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~  232 (308)
T 2ond_A          158 KKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTS  232 (308)
T ss_dssp             HHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHS
T ss_pred             HHHHhcCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence            77777777766666555544332 57777777777777777776655222   2234456666666666666653

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.30  E-value=1.5e-11  Score=98.86  Aligned_cols=92  Identities=17%  Similarity=0.147  Sum_probs=79.8

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCC---HHHH-HHHHHHHHcCCHHHHHHHHHhhCcCCcCCCCCHHHHHHHHHHHHHhCCCC
Q 019586            2 QQNNYIEAEDAYRRALSIAPDN---NKMC-NLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDL   77 (338)
Q Consensus         2 q~g~~eeAi~~y~kALeldPd~---a~a~-nLG~~y~~~G~~dEAi~~~~k~~p~~~d~lg~~deAi~~yekAL~l~Pd~   77 (338)
                      ..|+|++|+.+|+++++++|++   ...+ ++|.+|..+|++                     ++|+.+|++++++.|++
T Consensus        40 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~---------------------~~A~~~~~~~~~~~~~~   98 (148)
T 2dba_A           40 KCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDY---------------------DKAETEASKAIEKDGGD   98 (148)
T ss_dssp             TTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCH---------------------HHHHHHHHHHHHHTSCC
T ss_pred             HhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccH---------------------HHHHHHHHHHHhhCccC
Confidence            4688888888888888888876   5544 888888888888                     56666677799999999


Q ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCccc
Q 019586           78 ESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDHI  114 (338)
Q Consensus        78 ~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~~  114 (338)
                      +.+|+++|.++..+|++++|+.+|+++++++|.+...
T Consensus        99 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~  135 (148)
T 2dba_A           99 VKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVF  135 (148)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHH
Confidence            9999999999999999999999999999999988763

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=99.30  E-value=3e-12  Score=105.56  Aligned_cols=85  Identities=11%  Similarity=-0.088  Sum_probs=75.5

Q ss_pred             CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCccc---ccchhhhcCccHHHHHhhh
Q 019586           57 PRGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDHI---LPTTNAIKTRDDFADENID  133 (338)
Q Consensus        57 lg~~deAi~~yekAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~~---l~~l~~~~~~~~~A~e~~~  133 (338)
                      .|++++|+..|++++.++|+++.+|+++|.+|..+|++++|+.+|+++++++|.++..   ++.+....++.+.|...+.
T Consensus        31 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~  110 (142)
T 2xcb_A           31 AGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHLQLGDLDGAESGFY  110 (142)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            6899999999999999999999999999999999999999999999999999999873   3334667888888888888


Q ss_pred             hcccCCCh
Q 019586          134 SNVDVNPI  141 (338)
Q Consensus       134 ~al~~~P~  141 (338)
                      .++..+|.
T Consensus       111 ~al~~~p~  118 (142)
T 2xcb_A          111 SARALAAA  118 (142)
T ss_dssp             HHHHHHHT
T ss_pred             HHHHhCCC
Confidence            87776664

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=99.30  E-value=2.1e-11  Score=99.87  Aligned_cols=91  Identities=14%  Similarity=0.230  Sum_probs=82.2

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcCCHHHHHHHHHhhCcCCcCCCCCHHHHHHHHHHHHHhCCCCHHH
Q 019586            2 QQNNYIEAEDAYRRALSIAPDNNKMC-NLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDLESE   80 (338)
Q Consensus         2 q~g~~eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k~~p~~~d~lg~~deAi~~yekAL~l~Pd~~~a   80 (338)
                      ..|++++|+.+|++++.++|++...+ ++|.++..+|++                     ++|+.+|+++++++|+++.+
T Consensus        25 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~---------------------~~A~~~~~~a~~~~~~~~~~   83 (166)
T 1a17_A           25 KAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECY---------------------GYALGDATRAIELDKKYIKG   83 (166)
T ss_dssp             HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCH---------------------HHHHHHHHHHHHHCTTCHHH
T ss_pred             HccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCH---------------------HHHHHHHHHHHHhCcccHHH
Confidence            46899999999999999999998877 999999999999                     55666667799999999999


Q ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHccCCCCcc
Q 019586           81 MMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDH  113 (338)
Q Consensus        81 ~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~  113 (338)
                      |+++|.++..+|++++|+.+|+++++++|.+..
T Consensus        84 ~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~  116 (166)
T 1a17_A           84 YYRRAASNMALGKFRAALRDYETVVKVKPHDKD  116 (166)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHH
T ss_pred             HHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHH
Confidence            999999999999999999999999999998765

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=99.29  E-value=4.1e-11  Score=93.23  Aligned_cols=91  Identities=16%  Similarity=0.165  Sum_probs=81.4

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcCCHHHHHHHHHhhCcCCcCCCCCHHHHHHHHHHHHHhCCCCHHH
Q 019586            2 QQNNYIEAEDAYRRALSIAPDNNKMC-NLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDLESE   80 (338)
Q Consensus         2 q~g~~eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k~~p~~~d~lg~~deAi~~yekAL~l~Pd~~~a   80 (338)
                      ..|++++|+.+|++++.++|++...+ ++|.+|...|++                     ++|+.+|++++++.|+++.+
T Consensus        24 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~---------------------~~A~~~~~~~~~~~~~~~~~   82 (131)
T 2vyi_A           24 KVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNY---------------------AGAVQDCERAICIDPAYSKA   82 (131)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH---------------------HHHHHHHHHHHHHCTTCHHH
T ss_pred             HccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhch---------------------HHHHHHHHHHHhcCccCHHH
Confidence            36889999999999999999888866 999999999988                     55666667799999999999


Q ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHccCCCCcc
Q 019586           81 MMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDH  113 (338)
Q Consensus        81 ~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~  113 (338)
                      ++.+|.++..+|++++|+.+|+++++++|.+..
T Consensus        83 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~  115 (131)
T 2vyi_A           83 YGRMGLALSSLNKHVEAVAYYKKALELDPDNET  115 (131)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHH
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHhcCccchH
Confidence            999999999999999999999999999998765

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=99.29  E-value=5e-12  Score=120.41  Aligned_cols=120  Identities=15%  Similarity=0.111  Sum_probs=77.0

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCCCHH-----------------HH-HHHHHHHHcCCHHHHHHHHHhhCcCCcCCCCCHHH
Q 019586            1 MQQNNYIEAEDAYRRALSIAPDNNK-----------------MC-NLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDS   62 (338)
Q Consensus         1 mq~g~~eeAi~~y~kALeldPd~a~-----------------a~-nLG~~y~~~G~~dEAi~~~~k~~p~~~d~lg~~de   62 (338)
                      ++.|+|++|+.+|++|+.+.|++..                 .| |+|.||..+|+|                     ++
T Consensus       190 ~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~---------------------~~  248 (338)
T 2if4_A          190 FKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRY---------------------DE  248 (338)
T ss_dssp             CSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCC---------------------HH
T ss_pred             HhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCH---------------------HH
Confidence            3579999999999999999998762                 44 999999999999                     55


Q ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCcccccchh----hhcCccHHHHHhhhhcccC
Q 019586           63 HLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDHILPTTN----AIKTRDDFADENIDSNVDV  138 (338)
Q Consensus        63 Ai~~yekAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~~l~~l~----~~~~~~~~A~e~~~~al~~  138 (338)
                      |+.+|+++++++|++..+|+++|.+|..+|++++|+.+|+++++++|.+..++..+.    ........+...+...+..
T Consensus       249 A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~~~~~~~l~~  328 (338)
T 2if4_A          249 AIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKEMYKGIFKG  328 (338)
T ss_dssp             HHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC------------------------------------
T ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence            666677799999999999999999999999999999999999999999887544331    1223333344455555554


Q ss_pred             CCh
Q 019586          139 NPI  141 (338)
Q Consensus       139 ~P~  141 (338)
                      +|.
T Consensus       329 ~p~  331 (338)
T 2if4_A          329 KDE  331 (338)
T ss_dssp             ---
T ss_pred             CCC
Confidence            554

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=99.29  E-value=2.4e-11  Score=121.99  Aligned_cols=112  Identities=19%  Similarity=0.114  Sum_probs=103.6

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcCCHHHHHHHHHhh---CcCCcC----------CCCCHHHHHHHH
Q 019586            2 QQNNYIEAEDAYRRALSIAPDNNKMC-NLGICLMKQGRIGEAKETLRRV---KPAVAD----------GPRGVDSHLKAY   67 (338)
Q Consensus         2 q~g~~eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k~---~p~~~d----------~lg~~deAi~~y   67 (338)
                      +.|++++|+.+|+++++++|++..++ ++|.+|..+|++++|+.+|+++   .|.++.          ..|++++|+.+|
T Consensus        35 ~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~  114 (568)
T 2vsy_A           35 GMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAY  114 (568)
T ss_dssp             HHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            36899999999999999999999977 9999999999999999999994   455443          289999999999


Q ss_pred             HHHHHhCCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHccCCCCcc
Q 019586           68 ERAQQMLKDLESEMMNKGGDRVEQ---SRLFDAFLGSSSIWQPQPCKDH  113 (338)
Q Consensus        68 ekAL~l~Pd~~~a~~nLG~~l~~l---Gr~~eAi~~yekALkl~P~~~~  113 (338)
                      +++++++|++..++.++|.++..+   |++++|+.+|+++++.+|.+..
T Consensus       115 ~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~  163 (568)
T 2vsy_A          115 TRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGVGAVE  163 (568)
T ss_dssp             HHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHTCCCSC
T ss_pred             HHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcCCcccC
Confidence            999999999999999999999999   9999999999999999998765

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=99.29  E-value=1e-11  Score=117.90  Aligned_cols=92  Identities=15%  Similarity=0.207  Sum_probs=83.5

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCC---------------HHHH-HHHHHHHHcCCHHHHHHHHHhhCcCCcCCCCCHHHHHH
Q 019586            2 QQNNYIEAEDAYRRALSIAPDN---------------NKMC-NLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLK   65 (338)
Q Consensus         2 q~g~~eeAi~~y~kALeldPd~---------------a~a~-nLG~~y~~~G~~dEAi~~~~k~~p~~~d~lg~~deAi~   65 (338)
                      +.|+|++|+.+|++|+.++|++               ..+| ++|.||..+|+|                     ++|+.
T Consensus       159 ~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~---------------------~~A~~  217 (336)
T 1p5q_A          159 KEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAF---------------------SAAIE  217 (336)
T ss_dssp             HHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCH---------------------HHHHH
T ss_pred             HCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCH---------------------HHHHH
Confidence            4689999999999999999998               4555 999999999999                     55666


Q ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCccc
Q 019586           66 AYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDHI  114 (338)
Q Consensus        66 ~yekAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~~  114 (338)
                      +|++|++++|+++.+|+++|.+|..+|++++|+.+|+++++++|.+...
T Consensus       218 ~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a  266 (336)
T 1p5q_A          218 SCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAA  266 (336)
T ss_dssp             HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHH
T ss_pred             HHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHH
Confidence            6677999999999999999999999999999999999999999998763

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=99.27  E-value=1.5e-11  Score=121.89  Aligned_cols=93  Identities=14%  Similarity=0.189  Sum_probs=81.0

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCC---------------HHHH-HHHHHHHHcCCHHHHHHHHHhhCcCCcCCCCCHHHHHH
Q 019586            2 QQNNYIEAEDAYRRALSIAPDN---------------NKMC-NLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLK   65 (338)
Q Consensus         2 q~g~~eeAi~~y~kALeldPd~---------------a~a~-nLG~~y~~~G~~dEAi~~~~k~~p~~~d~lg~~deAi~   65 (338)
                      +.|+|++|+.+|++|++++|++               ..+| |+|.||..+|+|                     ++|+.
T Consensus       280 ~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~---------------------~~A~~  338 (457)
T 1kt0_A          280 KGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREY---------------------TKAVE  338 (457)
T ss_dssp             HTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCH---------------------HHHHH
T ss_pred             hCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCH---------------------HHHHH
Confidence            4789999999999999999998               4555 999999999999                     55666


Q ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCcccc
Q 019586           66 AYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDHIL  115 (338)
Q Consensus        66 ~yekAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~~l  115 (338)
                      +|++|++++|++..+|+++|.+|..+|++++|+.+|+++++++|.+..++
T Consensus       339 ~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~  388 (457)
T 1kt0_A          339 CCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAAR  388 (457)
T ss_dssp             HHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHH
T ss_pred             HHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHH
Confidence            67779999999999999999999999999999999999999999988744

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=99.27  E-value=2.2e-11  Score=105.19  Aligned_cols=92  Identities=17%  Similarity=0.118  Sum_probs=83.3

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCCH----------------HHH-HHHHHHHHcCCHHHHHHHHHhhCcCCcCCCCCHHHHH
Q 019586            2 QQNNYIEAEDAYRRALSIAPDNN----------------KMC-NLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHL   64 (338)
Q Consensus         2 q~g~~eeAi~~y~kALeldPd~a----------------~a~-nLG~~y~~~G~~dEAi~~~~k~~p~~~d~lg~~deAi   64 (338)
                      ..|+|++|+.+|++++.+.|++.                ..+ ++|.+|..+|+|                     ++|+
T Consensus        50 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~---------------------~~A~  108 (198)
T 2fbn_A           50 KKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDY---------------------PKAI  108 (198)
T ss_dssp             HTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCH---------------------HHHH
T ss_pred             HcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCH---------------------HHHH
Confidence            46899999999999999999886                555 999999999999                     5566


Q ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCccc
Q 019586           65 KAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDHI  114 (338)
Q Consensus        65 ~~yekAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~~  114 (338)
                      .+|+++++++|+++.+|+++|.+|..+|++++|+.+|+++++++|.+..+
T Consensus       109 ~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~  158 (198)
T 2fbn_A          109 DHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDI  158 (198)
T ss_dssp             HHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHH
T ss_pred             HHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHH
Confidence            66677999999999999999999999999999999999999999998763

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=99.27  E-value=1.8e-11  Score=117.73  Aligned_cols=141  Identities=11%  Similarity=0.052  Sum_probs=120.8

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcCCHHHHHHHHHhh---CcCCcC----------CCCCHHHHHHHH
Q 019586            2 QQNNYIEAEDAYRRALSIAPDNNKMC-NLGICLMKQGRIGEAKETLRRV---KPAVAD----------GPRGVDSHLKAY   67 (338)
Q Consensus         2 q~g~~eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k~---~p~~~d----------~lg~~deAi~~y   67 (338)
                      ..|++++|+.+|++++.++|++...+ ++|.+|...|++++|+..|+++   .|.++.          ..|++++|+.+|
T Consensus       282 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~  361 (514)
T 2gw1_A          282 DRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLF  361 (514)
T ss_dssp             TSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHH
T ss_pred             HCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            46899999999999999999999877 9999999999999999999994   444433          378999999999


Q ss_pred             HHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCccc---------ccchhhh---cCccHHHHHhhhhc
Q 019586           68 ERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDHI---------LPTTNAI---KTRDDFADENIDSN  135 (338)
Q Consensus        68 ekAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~~---------l~~l~~~---~~~~~~A~e~~~~a  135 (338)
                      ++++++.|+++.+|+++|.++...|++++|+.+|++++++.|.+...         ++.+...   .++.+.|...+..+
T Consensus       362 ~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a  441 (514)
T 2gw1_A          362 SEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKA  441 (514)
T ss_dssp             HHHHHHSTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHH
T ss_pred             HHHHHHcccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999988641         1222345   67777888888888


Q ss_pred             ccCCChh
Q 019586          136 VDVNPIV  142 (338)
Q Consensus       136 l~~~P~~  142 (338)
                      +..+|..
T Consensus       442 ~~~~~~~  448 (514)
T 2gw1_A          442 SKLDPRS  448 (514)
T ss_dssp             HHHCTTC
T ss_pred             HHhCccc
Confidence            7777754

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.26  E-value=3.7e-11  Score=111.92  Aligned_cols=138  Identities=12%  Similarity=0.040  Sum_probs=109.1

Q ss_pred             CCCCHHHHHHHHHHHHHh--CCCCHHHH-HHHHHHHHcCCHHHHHHHHHhhCcCCcC----------CCCCHHHHHHHHH
Q 019586            2 QQNNYIEAEDAYRRALSI--APDNNKMC-NLGICLMKQGRIGEAKETLRRVKPAVAD----------GPRGVDSHLKAYE   68 (338)
Q Consensus         2 q~g~~eeAi~~y~kALel--dPd~a~a~-nLG~~y~~~G~~dEAi~~~~k~~p~~~d----------~lg~~deAi~~ye   68 (338)
                      ..+++++|+..|++.+..  +|++..++ .+|.+|...|++++|+..|++  |.+++          .+|++++|+..|+
T Consensus        77 ~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~--~~~~~~~~~l~~~~~~~g~~~~A~~~l~  154 (291)
T 3mkr_A           77 SHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ--GDSLECMAMTVQILLKLDRLDLARKELK  154 (291)
T ss_dssp             CSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT--CCSHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             CCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence            357899999999999876  59999866 999999999999999999998  55444          2899999999999


Q ss_pred             HHHHhCCCCHHHHHHHH--HHHHHCCCHHHHHHHHHHHHccCCCCccccc---chhhhcCccHHHHHhhhhcccCCCh
Q 019586           69 RAQQMLKDLESEMMNKG--GDRVEQSRLFDAFLGSSSIWQPQPCKDHILP---TTNAIKTRDDFADENIDSNVDVNPI  141 (338)
Q Consensus        69 kAL~l~Pd~~~a~~nLG--~~l~~lGr~~eAi~~yekALkl~P~~~~~l~---~l~~~~~~~~~A~e~~~~al~~~P~  141 (338)
                      ++++++|+........|  .++...|++++|+.+|+++++..|.++.++.   .+....++.+.|.+.+..++..+|.
T Consensus       155 ~~~~~~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~  232 (291)
T 3mkr_A          155 KMQDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSG  232 (291)
T ss_dssp             HHHHHCTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             HHHhhCcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence            99999999865544433  3344568999999999999999998877433   2356777888888777776665554

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=99.26  E-value=1.4e-11  Score=123.13  Aligned_cols=93  Identities=14%  Similarity=0.215  Sum_probs=81.8

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcCCHHHHHHHHHhhCcCCcCCCCCHHHHHHHHHHHHHhCCCCHHH
Q 019586            2 QQNNYIEAEDAYRRALSIAPDNNKMC-NLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDLESE   80 (338)
Q Consensus         2 q~g~~eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k~~p~~~d~lg~~deAi~~yekAL~l~Pd~~~a   80 (338)
                      +.|+|++|+.+|++|++++|++..++ ++|.+|..+|++                     ++|+.+|++|++++|+++.+
T Consensus        18 ~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~---------------------~~A~~~~~~al~l~p~~~~~   76 (477)
T 1wao_1           18 KAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECY---------------------GYALGDATRAIELDKKYIKG   76 (477)
T ss_dssp             TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH---------------------HHHHHHHHHHHHSCTTCHHH
T ss_pred             HhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCH---------------------HHHHHHHHHHHHhCCCCHHH
Confidence            57999999999999999999999977 999999999999                     45556666688889999999


Q ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHccCCCCcccc
Q 019586           81 MMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDHIL  115 (338)
Q Consensus        81 ~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~~l  115 (338)
                      |+++|.+|..+|++++|+.+|+++++++|.+...+
T Consensus        77 ~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~  111 (477)
T 1wao_1           77 YYRRAASNMALGKFRAALRDYETVVKVKPHDKDAK  111 (477)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCTTHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Confidence            99999999999999999999999999988887633

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=99.24  E-value=2.1e-11  Score=109.30  Aligned_cols=112  Identities=17%  Similarity=0.158  Sum_probs=98.6

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCCH---HHH-HHHHHHHH--------cCCHHHHHHHHHhh---CcCCcC-----------
Q 019586            2 QQNNYIEAEDAYRRALSIAPDNN---KMC-NLGICLMK--------QGRIGEAKETLRRV---KPAVAD-----------   55 (338)
Q Consensus         2 q~g~~eeAi~~y~kALeldPd~a---~a~-nLG~~y~~--------~G~~dEAi~~~~k~---~p~~~d-----------   55 (338)
                      +.|+|++|+..|++++++.|++.   .++ ++|.+|..        +|++++|+..|+++   .|.++.           
T Consensus        64 ~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~  143 (261)
T 3qky_A           64 QNKEYLLAASEYERFIQIYQIDPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIREL  143 (261)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHH
T ss_pred             HhCcHHHHHHHHHHHHHHCCCCchhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHH
Confidence            47999999999999999998653   344 99999999        99999999999994   454432           


Q ss_pred             ----------------CCCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHC----------CCHHHHHHHHHHHHc
Q 019586           56 ----------------GPRGVDSHLKAYERAQQMLKD---LESEMMNKGGDRVEQ----------SRLFDAFLGSSSIWQ  106 (338)
Q Consensus        56 ----------------~lg~~deAi~~yekAL~l~Pd---~~~a~~nLG~~l~~l----------Gr~~eAi~~yekALk  106 (338)
                                      ..|++++|+..|+++++..|+   .+.+++.+|.+|..+          |++++|+.+|+++++
T Consensus       144 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~  223 (261)
T 3qky_A          144 RAKLARKQYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQ  223 (261)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHH
Confidence                            168999999999999999998   568999999999987          999999999999999


Q ss_pred             cCCCCcc
Q 019586          107 PQPCKDH  113 (338)
Q Consensus       107 l~P~~~~  113 (338)
                      ..|+++.
T Consensus       224 ~~p~~~~  230 (261)
T 3qky_A          224 IFPDSPL  230 (261)
T ss_dssp             HCTTCTH
T ss_pred             HCCCChH
Confidence            9999875

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=99.24  E-value=2.6e-12  Score=112.98  Aligned_cols=136  Identities=14%  Similarity=0.014  Sum_probs=100.9

Q ss_pred             CCCHHHHHHHHHHHHHhC--------CCCHHHH-HHHHHHHHcCCHHHHHHHHHhhC--------cCCcC----------
Q 019586            3 QNNYIEAEDAYRRALSIA--------PDNNKMC-NLGICLMKQGRIGEAKETLRRVK--------PAVAD----------   55 (338)
Q Consensus         3 ~g~~eeAi~~y~kALeld--------Pd~a~a~-nLG~~y~~~G~~dEAi~~~~k~~--------p~~~d----------   55 (338)
                      .|++++|+.+|++|+++-        |.....+ ++|.+|..+|++++|+.+|+++.        +..+.          
T Consensus        14 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~   93 (283)
T 3edt_B           14 LVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAV   93 (283)
T ss_dssp             CSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHH
Confidence            577888888888888852        3333344 89999999999999999998833        22222          


Q ss_pred             ---CCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcc--------CCCCcc---
Q 019586           56 ---GPRGVDSHLKAYERAQQM--------LKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQP--------QPCKDH---  113 (338)
Q Consensus        56 ---~lg~~deAi~~yekAL~l--------~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl--------~P~~~~---  113 (338)
                         ..|++++|+.+|++++++        .|....++.++|.+|..+|++++|+.+|++++++        .|....   
T Consensus        94 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~  173 (283)
T 3edt_B           94 LYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKN  173 (283)
T ss_dssp             HHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred             HHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence               378999999999999988        4667788899999999999999999999999888        443333   


Q ss_pred             cccchhhhcCccHHHHHhhhhcccC
Q 019586          114 ILPTTNAIKTRDDFADENIDSNVDV  138 (338)
Q Consensus       114 ~l~~l~~~~~~~~~A~e~~~~al~~  138 (338)
                      .++.+....++.+.|...+...+..
T Consensus       174 ~la~~~~~~g~~~~A~~~~~~~l~~  198 (283)
T 3edt_B          174 NLASCYLKQGKYQDAETLYKEILTR  198 (283)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            2233355667777777777666643

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=99.23  E-value=1.4e-10  Score=89.40  Aligned_cols=90  Identities=26%  Similarity=0.355  Sum_probs=77.2

Q ss_pred             CCCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcCCHHHHHHHHHhhCcCCcCCCCCHHHHHHHHHHHHHhCCCCHHHH
Q 019586            3 QNNYIEAEDAYRRALSIAPDNNKMC-NLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDLESEM   81 (338)
Q Consensus         3 ~g~~eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k~~p~~~d~lg~~deAi~~yekAL~l~Pd~~~a~   81 (338)
                      .|++++|+.+|++++..+|++...+ ++|.++...|++                     ++|+.+|++++++.|+.+.++
T Consensus        22 ~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~---------------------~~A~~~~~~~~~~~~~~~~~~   80 (125)
T 1na0_A           22 QGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDY---------------------DEAIEYYQKALELDPNNAEAW   80 (125)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH---------------------HHHHHHHHHHHHHCTTCHHHH
T ss_pred             cCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCH---------------------HHHHHHHHHHHHhCCccHHHH
Confidence            5778888888888888888777755 888888888877                     566666777899999999999


Q ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHccCCCCcc
Q 019586           82 MNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDH  113 (338)
Q Consensus        82 ~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~  113 (338)
                      +.+|.++...|++++|+.+|+++++++|.+..
T Consensus        81 ~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~  112 (125)
T 1na0_A           81 YNLGNAYYKQGDYDEAIEYYQKALELDPNNAE  112 (125)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHH
Confidence            99999999999999999999999999998766

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=99.23  E-value=2.3e-11  Score=95.97  Aligned_cols=86  Identities=14%  Similarity=0.043  Sum_probs=77.7

Q ss_pred             HHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcCCHHHHHHHHHhhCcCCcCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 019586            7 IEAEDAYRRALSIAPDNNKMC-NLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDLESEMMNKG   85 (338)
Q Consensus         7 eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k~~p~~~d~lg~~deAi~~yekAL~l~Pd~~~a~~nLG   85 (338)
                      ++|+..|+++++.+|++...+ ++|.+|..+|++                     ++|+.+|+++++++|++..+|+++|
T Consensus         2 ~~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~---------------------~~A~~~~~~al~~~p~~~~~~~~la   60 (115)
T 2kat_A            2 QAITERLEAMLAQGTDNMLLRFTLGKTYAEHEQF---------------------DAALPHLRAALDFDPTYSVAWKWLG   60 (115)
T ss_dssp             CCHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCH---------------------HHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             hHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCH---------------------HHHHHHHHHHHHHCCCcHHHHHHHH
Confidence            468999999999999999977 999999999999                     5566666779999999999999999


Q ss_pred             HHHHHCCCHHHHHHHHHHHHccCCCCcc
Q 019586           86 GDRVEQSRLFDAFLGSSSIWQPQPCKDH  113 (338)
Q Consensus        86 ~~l~~lGr~~eAi~~yekALkl~P~~~~  113 (338)
                      .+|..+|++++|+.+|++++++.|....
T Consensus        61 ~~~~~~g~~~~A~~~~~~al~~~~~~~~   88 (115)
T 2kat_A           61 KTLQGQGDRAGARQAWESGLAAAQSRGD   88 (115)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhcccccc
Confidence            9999999999999999999999886543

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=99.23  E-value=4.7e-11  Score=110.65  Aligned_cols=107  Identities=10%  Similarity=0.048  Sum_probs=92.6

Q ss_pred             HHHHHHHHHHHHhCCCCHHHH-HHHHHHHH-------cCCH-------HHHHHHHHhhCc-CCcC-------------CC
Q 019586            7 IEAEDAYRRALSIAPDNNKMC-NLGICLMK-------QGRI-------GEAKETLRRVKP-AVAD-------------GP   57 (338)
Q Consensus         7 eeAi~~y~kALeldPd~a~a~-nLG~~y~~-------~G~~-------dEAi~~~~k~~p-~~~d-------------~l   57 (338)
                      ++|+..|++|+..+|+++.+| ++|.++..       .|++       ++|+..|+++.. ..|+             ..
T Consensus        33 ~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~  112 (308)
T 2ond_A           33 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESR  112 (308)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhc
Confidence            789999999999999999977 99988864       5886       899999999443 2333             27


Q ss_pred             CCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCcc
Q 019586           58 RGVDSHLKAYERAQQMLKDLES-EMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDH  113 (338)
Q Consensus        58 g~~deAi~~yekAL~l~Pd~~~-a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~  113 (338)
                      |++++|+..|++++++.|+++. +|.++|.++..+|++++|+..|+++++.+|....
T Consensus       113 ~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~  169 (308)
T 2ond_A          113 MKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHH  169 (308)
T ss_dssp             TCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTH
T ss_pred             CCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHH
Confidence            8999999999999999999886 8999999999999999999999999999987755

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=99.22  E-value=5.5e-11  Score=92.78  Aligned_cols=88  Identities=14%  Similarity=0.178  Sum_probs=77.9

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcCCHHHHHHHHHhhCcCCcCCCCCHHHHHHHHHHHHHhCCCC---
Q 019586            2 QQNNYIEAEDAYRRALSIAPDNNKMC-NLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDL---   77 (338)
Q Consensus         2 q~g~~eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k~~p~~~d~lg~~deAi~~yekAL~l~Pd~---   77 (338)
                      ..|++++|+.+|++++.++|++...+ ++|.+|..+|+++                     +|+.+|++++.+.|+.   
T Consensus        16 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~---------------------~A~~~~~~~~~~~~~~~~~   74 (131)
T 1elr_A           16 KKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYN---------------------KCRELCEKAIEVGRENRED   74 (131)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHH---------------------HHHHHHHHHHHHHHHSTTC
T ss_pred             HhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHH---------------------HHHHHHHHHHhhccccchh
Confidence            46899999999999999999999877 9999999999995                     4555556678887766   


Q ss_pred             ----HHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCC
Q 019586           78 ----ESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPC  110 (338)
Q Consensus        78 ----~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~  110 (338)
                          ..+++++|.++..+|++++|+.+|++++++.|+
T Consensus        75 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~  111 (131)
T 1elr_A           75 YRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRT  111 (131)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC
T ss_pred             HHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC
Confidence                889999999999999999999999999999883

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=99.19  E-value=2.6e-11  Score=99.01  Aligned_cols=68  Identities=13%  Similarity=0.045  Sum_probs=61.1

Q ss_pred             HHH-HHHHHHHHcCCHHHHHHHHHhhCcCCcCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Q 019586           25 KMC-NLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSS  103 (338)
Q Consensus        25 ~a~-nLG~~y~~~G~~dEAi~~~~k~~p~~~d~lg~~deAi~~yekAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yek  103 (338)
                      .++ ++|.++.++|+|                     ++|+.+|++||+++|+++.+|+++|.+|..+|++++|+.+|++
T Consensus         9 ~a~~~lG~~~~~~~~~---------------------~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~   67 (127)
T 4gcn_A            9 IAEKDLGNAAYKQKDF---------------------EKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEK   67 (127)
T ss_dssp             HHHHHHHHHHHHTTCH---------------------HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCH---------------------HHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHH
Confidence            345 999999999999                     5566666779999999999999999999999999999999999


Q ss_pred             HHccCCCCcc
Q 019586          104 IWQPQPCKDH  113 (338)
Q Consensus       104 ALkl~P~~~~  113 (338)
                      +++++|.+..
T Consensus        68 al~~~~~~~~   77 (127)
T 4gcn_A           68 AVEVGRETRA   77 (127)
T ss_dssp             HHHHHHHTTC
T ss_pred             HHHhCcccch
Confidence            9999998765

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=99.19  E-value=1.9e-10  Score=101.84  Aligned_cols=112  Identities=10%  Similarity=0.005  Sum_probs=98.5

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCCHH---H-HHHHHHHHH------------------cCCHHHHHHHHHhhCcCCcCC---
Q 019586            2 QQNNYIEAEDAYRRALSIAPDNNK---M-CNLGICLMK------------------QGRIGEAKETLRRVKPAVADG---   56 (338)
Q Consensus         2 q~g~~eeAi~~y~kALeldPd~a~---a-~nLG~~y~~------------------~G~~dEAi~~~~k~~p~~~d~---   56 (338)
                      +.|+|++|+..|+++++.+|++..   + +.+|.+|..                  +|++++|+..|+++...+|+.   
T Consensus        53 ~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a  132 (225)
T 2yhc_A           53 KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYT  132 (225)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTH
T ss_pred             hcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhH
Confidence            468999999999999999999864   3 489999876                  679999999999955444431   


Q ss_pred             ---------------------------CCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHCCCHHHHHHHHHHHHc
Q 019586           57 ---------------------------PRGVDSHLKAYERAQQMLKDLE---SEMMNKGGDRVEQSRLFDAFLGSSSIWQ  106 (338)
Q Consensus        57 ---------------------------lg~~deAi~~yekAL~l~Pd~~---~a~~nLG~~l~~lGr~~eAi~~yekALk  106 (338)
                                                 .|++++|+..|+++++..|+.+   .+++.+|.+|..+|++++|+.++++++.
T Consensus       133 ~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~  212 (225)
T 2yhc_A          133 TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA  212 (225)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHh
Confidence                                       5799999999999999999987   7799999999999999999999999999


Q ss_pred             cCCCCcc
Q 019586          107 PQPCKDH  113 (338)
Q Consensus       107 l~P~~~~  113 (338)
                      ..|.+.+
T Consensus       213 ~~~~~~~  219 (225)
T 2yhc_A          213 NSSNTLE  219 (225)
T ss_dssp             CCSCCCC
T ss_pred             hCCCchh
Confidence            9998766

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.19  E-value=1.3e-10  Score=104.44  Aligned_cols=135  Identities=14%  Similarity=0.193  Sum_probs=106.2

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHH----cCCHHHHHHHHHhhCc-CCcC----------C----CCCHH
Q 019586            2 QQNNYIEAEDAYRRALSIAPDNNKMC-NLGICLMK----QGRIGEAKETLRRVKP-AVAD----------G----PRGVD   61 (338)
Q Consensus         2 q~g~~eeAi~~y~kALeldPd~a~a~-nLG~~y~~----~G~~dEAi~~~~k~~p-~~~d----------~----lg~~d   61 (338)
                      ..|++++|+.+|+++++  |++..++ ++|.+|..    .+++++|+.+|+++.. .++.          .    .++++
T Consensus        18 ~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~   95 (273)
T 1ouv_A           18 KEKDFTQAKKYFEKACD--LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNYSNGCHLLGNLYYSGQGVSQNTN   95 (273)
T ss_dssp             HTTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHH
T ss_pred             hCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhCCCCcccCHH
Confidence            36899999999999998  6777766 99999999    9999999999999332 2322          2    78999


Q ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHH----CCCHHHHHHHHHHHHccCCCCcc-cccchhhh----cCccHHHHHhh
Q 019586           62 SHLKAYERAQQMLKDLESEMMNKGGDRVE----QSRLFDAFLGSSSIWQPQPCKDH-ILPTTNAI----KTRDDFADENI  132 (338)
Q Consensus        62 eAi~~yekAL~l~Pd~~~a~~nLG~~l~~----lGr~~eAi~~yekALkl~P~~~~-~l~~l~~~----~~~~~~A~e~~  132 (338)
                      +|+.+|+++++.  +++.+++++|.+|..    .|++++|+.+|+++++..+.... .++.+...    .+..+.|...+
T Consensus        96 ~A~~~~~~a~~~--~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~  173 (273)
T 1ouv_A           96 KALQYYSKACDL--KYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLNDGDGCTILGSLYDAGRGTPKDLKKALASY  173 (273)
T ss_dssp             HHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHH
T ss_pred             HHHHHHHHHHHc--CCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCCCCCCCHHHHHHHH
Confidence            999999999997  489999999999999    99999999999999998743222 22222233    56677777777


Q ss_pred             hhcccCCC
Q 019586          133 DSNVDVNP  140 (338)
Q Consensus       133 ~~al~~~P  140 (338)
                      ..++..++
T Consensus       174 ~~a~~~~~  181 (273)
T 1ouv_A          174 DKACDLKD  181 (273)
T ss_dssp             HHHHHTTC
T ss_pred             HHHHHCCC
Confidence            77665543

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=99.17  E-value=1.6e-10  Score=99.30  Aligned_cols=116  Identities=13%  Similarity=0.046  Sum_probs=95.3

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHhhCcCCcC----------CCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHH
Q 019586           26 MCNLGICLMKQGRIGEAKETLRRVKPAVAD----------GPRGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRLF   95 (338)
Q Consensus        26 a~nLG~~y~~~G~~dEAi~~~~k~~p~~~d----------~lg~~deAi~~yekAL~l~Pd~~~a~~nLG~~l~~lGr~~   95 (338)
                      .+++|.++...|+|++|+..|+++.+..+.          ..|++++|+.+|+++++++|+++.+|+++|.+|..+|+++
T Consensus         9 ~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~   88 (213)
T 1hh8_A            9 LWNEGVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYD   88 (213)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcccHH
Confidence            449999999999999999999997544433          2899999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHccCCCCcc-------------------cccchhhhcCccHHHHHhhhhcccCCCh
Q 019586           96 DAFLGSSSIWQPQPCKDH-------------------ILPTTNAIKTRDDFADENIDSNVDVNPI  141 (338)
Q Consensus        96 eAi~~yekALkl~P~~~~-------------------~l~~l~~~~~~~~~A~e~~~~al~~~P~  141 (338)
                      +|+.+|++++++.|.+..                   .++.+....++.+.|.+.+..++..+|.
T Consensus        89 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~  153 (213)
T 1hh8_A           89 LAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSE  153 (213)
T ss_dssp             HHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCS
T ss_pred             HHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCcc
Confidence            999999999999998772                   1122234556666666666666666664

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=99.17  E-value=2.3e-11  Score=108.87  Aligned_cols=137  Identities=15%  Similarity=0.059  Sum_probs=106.5

Q ss_pred             CCCCHHHHHHHHHHHHHh--------CCCCHHHH-HHHHHHHHcCCHHHHHHHHHhhC--------cCCcC---------
Q 019586            2 QQNNYIEAEDAYRRALSI--------APDNNKMC-NLGICLMKQGRIGEAKETLRRVK--------PAVAD---------   55 (338)
Q Consensus         2 q~g~~eeAi~~y~kALel--------dPd~a~a~-nLG~~y~~~G~~dEAi~~~~k~~--------p~~~d---------   55 (338)
                      ..|++++|+.+|++++++        .|.....+ ++|.+|...|++++|+.+|+++.        +..+.         
T Consensus        39 ~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~  118 (311)
T 3nf1_A           39 SQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLA  118 (311)
T ss_dssp             HTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence            468999999999999996        34444445 99999999999999999999833        22222         


Q ss_pred             ----CCCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcc--------CCCCcc--
Q 019586           56 ----GPRGVDSHLKAYERAQQML--------KDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQP--------QPCKDH--  113 (338)
Q Consensus        56 ----~lg~~deAi~~yekAL~l~--------Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl--------~P~~~~--  113 (338)
                          ..|++++|+.+|++++++.        |....++.++|.++...|++++|+.+|++++++        .|....  
T Consensus       119 ~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~  198 (311)
T 3nf1_A          119 VLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTK  198 (311)
T ss_dssp             HHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHH
T ss_pred             HHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence                3889999999999999984        556688999999999999999999999999988        443332  


Q ss_pred             -cccchhhhcCccHHHHHhhhhcccC
Q 019586          114 -ILPTTNAIKTRDDFADENIDSNVDV  138 (338)
Q Consensus       114 -~l~~l~~~~~~~~~A~e~~~~al~~  138 (338)
                       .++.+....++.+.|...+..++..
T Consensus       199 ~~la~~~~~~g~~~~A~~~~~~al~~  224 (311)
T 3nf1_A          199 NNLASCYLKQGKFKQAETLYKEILTR  224 (311)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence             2233356677777887777776653

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=99.16  E-value=1.1e-10  Score=110.48  Aligned_cols=137  Identities=14%  Similarity=0.109  Sum_probs=107.1

Q ss_pred             CCCCHHHHHHHHHHHHHh---CCCC---HHHH-HHHHHHHHcCCHHHHHHHHHhhC---cCCcC----------------
Q 019586            2 QQNNYIEAEDAYRRALSI---APDN---NKMC-NLGICLMKQGRIGEAKETLRRVK---PAVAD----------------   55 (338)
Q Consensus         2 q~g~~eeAi~~y~kALel---dPd~---a~a~-nLG~~y~~~G~~dEAi~~~~k~~---p~~~d----------------   55 (338)
                      ..|+|++|+.+|++|+.+   .++.   +.++ ++|.+|..+|++++|+.+|+++.   +...+                
T Consensus       115 ~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~  194 (383)
T 3ulq_A          115 DQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNF  194 (383)
T ss_dssp             HTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHH
T ss_pred             HhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHH
Confidence            468999999999999998   3333   3344 99999999999999999999932   22221                


Q ss_pred             -CCCCHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHCCCHHHHHHHHHHHHcc-----C-CCCcc---cccchh
Q 019586           56 -GPRGVDSHLKAYERAQQMLKDLE------SEMMNKGGDRVEQSRLFDAFLGSSSIWQP-----Q-PCKDH---ILPTTN  119 (338)
Q Consensus        56 -~lg~~deAi~~yekAL~l~Pd~~------~a~~nLG~~l~~lGr~~eAi~~yekALkl-----~-P~~~~---~l~~l~  119 (338)
                       .+|++++|+.+|++|+++.+...      .+++++|.+|..+|++++|+.+|++++++     + |..+.   .++.+.
T Consensus       195 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~  274 (383)
T 3ulq_A          195 LDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIH  274 (383)
T ss_dssp             HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHH
T ss_pred             HHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHH
Confidence             27899999999999999865433      58999999999999999999999999994     4 44333   233335


Q ss_pred             hhcCccHHHHHhhhhcccC
Q 019586          120 AIKTRDDFADENIDSNVDV  138 (338)
Q Consensus       120 ~~~~~~~~A~e~~~~al~~  138 (338)
                      ...++.+.|.+.+..++..
T Consensus       275 ~~~g~~~~A~~~~~~al~~  293 (383)
T 3ulq_A          275 YKLGKIDKAHEYHSKGMAY  293 (383)
T ss_dssp             HHTTCHHHHHHHHHHHHHH
T ss_pred             HHCCCHHHHHHHHHHHHHH
Confidence            6778888888888877765

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=99.15  E-value=9.9e-11  Score=102.74  Aligned_cols=90  Identities=16%  Similarity=0.052  Sum_probs=80.9

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHh---hCcCCcC--------------------------CCCCHHHHHHHHHHHHHhCCC
Q 019586           26 MCNLGICLMKQGRIGEAKETLRR---VKPAVAD--------------------------GPRGVDSHLKAYERAQQMLKD   76 (338)
Q Consensus        26 a~nLG~~y~~~G~~dEAi~~~~k---~~p~~~d--------------------------~lg~~deAi~~yekAL~l~Pd   76 (338)
                      .+..|.++...|++++|+..|++   +.|.+++                          ..|++++|+.+|+++++++|+
T Consensus         7 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~   86 (208)
T 3urz_A            7 MLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKAPN   86 (208)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC
Confidence            44899999999999999999999   3444322                          278999999999999999999


Q ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCcccc
Q 019586           77 LESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDHIL  115 (338)
Q Consensus        77 ~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~~l  115 (338)
                      ++.+|+++|.+|..+|++++|+.+|+++++++|+++..+
T Consensus        87 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~  125 (208)
T 3urz_A           87 NVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAAN  125 (208)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHH
Confidence            999999999999999999999999999999999998744

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=99.15  E-value=3.8e-11  Score=116.35  Aligned_cols=93  Identities=14%  Similarity=0.172  Sum_probs=83.3

Q ss_pred             CCCCHHHHHHHHHHHHH----------------hCCCCHHHH-HHHHHHHHcCCHHHHHHHHHhhCcCCcCCCCCHHHHH
Q 019586            2 QQNNYIEAEDAYRRALS----------------IAPDNNKMC-NLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHL   64 (338)
Q Consensus         2 q~g~~eeAi~~y~kALe----------------ldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k~~p~~~d~lg~~deAi   64 (338)
                      +.|+|++|+.+|++|++                ++|.+...| ++|.+|..+|+|                     ++|+
T Consensus       235 ~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~---------------------~~A~  293 (370)
T 1ihg_A          235 KSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDW---------------------QGAV  293 (370)
T ss_dssp             HTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCH---------------------HHHH
T ss_pred             HhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCH---------------------HHHH
Confidence            46899999999999999                667666766 999999999999                     5566


Q ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCcccc
Q 019586           65 KAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDHIL  115 (338)
Q Consensus        65 ~~yekAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~~l  115 (338)
                      .+|++|++++|+++.+|+++|.+|..+|++++|+.+|+++++++|.+..++
T Consensus       294 ~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~  344 (370)
T 1ihg_A          294 DSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQ  344 (370)
T ss_dssp             HHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             HHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHH
Confidence            667779999999999999999999999999999999999999999987643

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=99.14  E-value=3.4e-11  Score=111.93  Aligned_cols=141  Identities=14%  Similarity=0.119  Sum_probs=111.0

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCC------HHHH-HHHHHHHHcCCHHHHHHHHHhhCcCC-----cC-------------C
Q 019586            2 QQNNYIEAEDAYRRALSIAPDN------NKMC-NLGICLMKQGRIGEAKETLRRVKPAV-----AD-------------G   56 (338)
Q Consensus         2 q~g~~eeAi~~y~kALeldPd~------a~a~-nLG~~y~~~G~~dEAi~~~~k~~p~~-----~d-------------~   56 (338)
                      ..|+|++|+.+|.+|+++.+..      ...+ ++|.+|..+|++++|+.+|+++...+     +.             .
T Consensus        48 ~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~  127 (307)
T 2ifu_A           48 NAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLME  127 (307)
T ss_dssp             HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHT
T ss_pred             HcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence            3689999999999999986533      2244 99999999999999999999832211     10             1


Q ss_pred             CCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCcc---------cccchhhh
Q 019586           57 PRGVDSHLKAYERAQQMLKDL------ESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDH---------ILPTTNAI  121 (338)
Q Consensus        57 lg~~deAi~~yekAL~l~Pd~------~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~---------~l~~l~~~  121 (338)
                      .|++++|+.+|++|+++.|..      ..++.++|.+|..+|++++|+.+|++++++.|.+..         .++.+...
T Consensus       128 ~g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~  207 (307)
T 2ifu_A          128 PLDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLH  207 (307)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHH
Confidence            389999999999999998754      578999999999999999999999999999876543         11112345


Q ss_pred             cCccHHHHHhhhhcccCCChhh
Q 019586          122 KTRDDFADENIDSNVDVNPIVL  143 (338)
Q Consensus       122 ~~~~~~A~e~~~~al~~~P~~~  143 (338)
                      .++...|...+..++ .+|...
T Consensus       208 ~g~~~~A~~~~~~al-~~p~~~  228 (307)
T 2ifu_A          208 RADYVAAQKCVRESY-SIPGFS  228 (307)
T ss_dssp             TTCHHHHHHHHHHHT-TSTTST
T ss_pred             cCCHHHHHHHHHHHh-CCCCCC
Confidence            577888888888888 888643

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=99.12  E-value=1.4e-11  Score=117.03  Aligned_cols=119  Identities=11%  Similarity=0.145  Sum_probs=97.7

Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcCCHHHHHHHHHhhCcCCcCCCCCHHHHHHHHHHHHHhCCCC-----
Q 019586            4 NNYIEAEDAYRRALSIAPDNNKMC-NLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDL-----   77 (338)
Q Consensus         4 g~~eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k~~p~~~d~lg~~deAi~~yekAL~l~Pd~-----   77 (338)
                      +++++|+.+|++++..+|+++..+ ++|.+|..+|+|++|                     +.+|++|+++.|++     
T Consensus       127 ~~~~~A~~~~~~a~~~~p~~a~~~~~~g~~~~~~g~~~~A---------------------~~~y~~Al~~~p~~~~~~~  185 (336)
T 1p5q_A          127 KSFEKAKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQA---------------------LLQYKKIVSWLEYESSFSN  185 (336)
T ss_dssp             EEEECCCCGGGCCHHHHHHHHHHHHHHHHHHHHHTCHHHH---------------------HHHHHHHHHHTTTCCCCCS
T ss_pred             eecccccchhcCCHHHHHHHHHHHHHHHHHHHHCCCHHHH---------------------HHHHHHHHHHhhccccCCh
Confidence            456778889999999999888877 999999999999555                     55555577777776     


Q ss_pred             ----------HHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCcccc---cchhhhcCccHHHHHhhhhcccCCChhh
Q 019586           78 ----------ESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDHIL---PTTNAIKTRDDFADENIDSNVDVNPIVL  143 (338)
Q Consensus        78 ----------~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~~l---~~l~~~~~~~~~A~e~~~~al~~~P~~~  143 (338)
                                ..+|+++|.+|..+|++++|+.+|+++++++|.+...+   +.+....++.+.|...+..++.++|...
T Consensus       186 ~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~  264 (336)
T 1p5q_A          186 EEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNK  264 (336)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCH
Confidence                      79999999999999999999999999999999988733   3335677788888888888777777644

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=99.10  E-value=2.2e-10  Score=91.33  Aligned_cols=95  Identities=12%  Similarity=0.051  Sum_probs=78.7

Q ss_pred             HHHH-HHHHHHHHcCCHHHHHHHHHhhCcCCcCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Q 019586           24 NKMC-NLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSS  102 (338)
Q Consensus        24 a~a~-nLG~~y~~~G~~dEAi~~~~k~~p~~~d~lg~~deAi~~yekAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~ye  102 (338)
                      +..+ ++|.++...|+|                     ++|+..|+++++++|+++.+|+++|.++..+|++++|+.+|+
T Consensus         4 a~~~~~~g~~~~~~~~~---------------------~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~   62 (126)
T 3upv_A            4 AEEARLEGKEYFTKSDW---------------------PNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCN   62 (126)
T ss_dssp             HHHHHHHHHHHHHTTCH---------------------HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCH---------------------HHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHH
Confidence            4444 899999999999                     556666677999999999999999999999999999999999


Q ss_pred             HHHccCCCCcccc---cchhhhcCccHHHHHhhhhcccCC
Q 019586          103 SIWQPQPCKDHIL---PTTNAIKTRDDFADENIDSNVDVN  139 (338)
Q Consensus       103 kALkl~P~~~~~l---~~l~~~~~~~~~A~e~~~~al~~~  139 (338)
                      ++++++|.++..+   +.+....++.+.|...+..++..+
T Consensus        63 ~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~  102 (126)
T 3upv_A           63 KAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKD  102 (126)
T ss_dssp             HHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHhCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHHhC
Confidence            9999999987733   333556777777777777776655

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=99.08  E-value=1.9e-10  Score=100.88  Aligned_cols=109  Identities=23%  Similarity=0.188  Sum_probs=93.1

Q ss_pred             CCCCHHHHHHHHHHHHHhC-----CC---CHHHH-HHHHHHHHcCCHHHHHHHHHhhCc--------CCcC---------
Q 019586            2 QQNNYIEAEDAYRRALSIA-----PD---NNKMC-NLGICLMKQGRIGEAKETLRRVKP--------AVAD---------   55 (338)
Q Consensus         2 q~g~~eeAi~~y~kALeld-----Pd---~a~a~-nLG~~y~~~G~~dEAi~~~~k~~p--------~~~d---------   55 (338)
                      ..|++++|+.+|++++++.     ++   ....+ ++|.+|..+|++++|+.+|+++..        .++.         
T Consensus        55 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la  134 (283)
T 3edt_B           55 DQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLA  134 (283)
T ss_dssp             HTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence            4689999999999999984     33   33344 999999999999999999999332        2332         


Q ss_pred             ----CCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCC
Q 019586           56 ----GPRGVDSHLKAYERAQQM--------LKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPC  110 (338)
Q Consensus        56 ----~lg~~deAi~~yekAL~l--------~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~  110 (338)
                          ..|++++|+.+|++++++        .|....++.++|.++..+|++++|+.+|++++++.+.
T Consensus       135 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~  201 (283)
T 3edt_B          135 LLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHE  201 (283)
T ss_dssp             HHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence                389999999999999999        7777889999999999999999999999999987543

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.06  E-value=6.9e-10  Score=99.60  Aligned_cols=135  Identities=11%  Similarity=0.040  Sum_probs=106.6

Q ss_pred             CCCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHH----cCCHHHHHHHHHhhCc-CCcC----------C----CCCHHH
Q 019586            3 QNNYIEAEDAYRRALSIAPDNNKMC-NLGICLMK----QGRIGEAKETLRRVKP-AVAD----------G----PRGVDS   62 (338)
Q Consensus         3 ~g~~eeAi~~y~kALeldPd~a~a~-nLG~~y~~----~G~~dEAi~~~~k~~p-~~~d----------~----lg~~de   62 (338)
                      .+++++|+.+|++|++++  +..++ ++|.+|..    .+++++|+.+|+++.. .++.          .    .+++++
T Consensus        55 ~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~~~~~~~~~  132 (273)
T 1ouv_A           55 EKNLKKAASFYAKACDLN--YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKK  132 (273)
T ss_dssp             CCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHH
T ss_pred             CCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcCCccHHHHHHHHHHcCCCcccCHHH
Confidence            689999999999999986  66655 99999999    9999999999999332 2322          2    789999


Q ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHH----CCCHHHHHHHHHHHHccCCCCcc-cccchhhh----cCccHHHHHhhh
Q 019586           63 HLKAYERAQQMLKDLESEMMNKGGDRVE----QSRLFDAFLGSSSIWQPQPCKDH-ILPTTNAI----KTRDDFADENID  133 (338)
Q Consensus        63 Ai~~yekAL~l~Pd~~~a~~nLG~~l~~----lGr~~eAi~~yekALkl~P~~~~-~l~~l~~~----~~~~~~A~e~~~  133 (338)
                      |+.+|++++++.  .+.+++++|.+|..    .+++++|+.+|+++++..+.... .++.+...    .+..+.|.+.+.
T Consensus       133 A~~~~~~a~~~~--~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~  210 (273)
T 1ouv_A          133 AVEYFTKACDLN--DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATKNFKEALARYS  210 (273)
T ss_dssp             HHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHH
T ss_pred             HHHHHHHHHhcC--cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCccHHHHHHHHH
Confidence            999999999875  68899999999998    99999999999999988543222 23333344    677788888888


Q ss_pred             hcccCCCh
Q 019586          134 SNVDVNPI  141 (338)
Q Consensus       134 ~al~~~P~  141 (338)
                      .++..+|.
T Consensus       211 ~a~~~~~~  218 (273)
T 1ouv_A          211 KACELENG  218 (273)
T ss_dssp             HHHHTTCH
T ss_pred             HHHhCCCH
Confidence            88877764

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=99.06  E-value=9.5e-11  Score=104.84  Aligned_cols=108  Identities=21%  Similarity=0.210  Sum_probs=91.9

Q ss_pred             CCCCHHHHHHHHHHHHHhC--------CCCHHHH-HHHHHHHHcCCHHHHHHHHHhhCc--------CCcC---------
Q 019586            2 QQNNYIEAEDAYRRALSIA--------PDNNKMC-NLGICLMKQGRIGEAKETLRRVKP--------AVAD---------   55 (338)
Q Consensus         2 q~g~~eeAi~~y~kALeld--------Pd~a~a~-nLG~~y~~~G~~dEAi~~~~k~~p--------~~~d---------   55 (338)
                      ..|++++|+.+|++++.+.        |.....+ ++|.+|..+|++++|+.+|+++..        ..+.         
T Consensus        81 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la  160 (311)
T 3nf1_A           81 DQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLA  160 (311)
T ss_dssp             HTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHH
Confidence            4689999999999999983        3333444 999999999999999999999332        2222         


Q ss_pred             ----CCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCC
Q 019586           56 ----GPRGVDSHLKAYERAQQM--------LKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQP  109 (338)
Q Consensus        56 ----~lg~~deAi~~yekAL~l--------~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P  109 (338)
                          ..|++++|+.+|++++++        .|....+++.+|.+|..+|++++|+.+|++++++.|
T Consensus       161 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  226 (311)
T 3nf1_A          161 LLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAH  226 (311)
T ss_dssp             HHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence                389999999999999999        777788999999999999999999999999998644

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=99.05  E-value=7.8e-11  Score=90.67  Aligned_cols=51  Identities=8%  Similarity=-0.016  Sum_probs=31.9

Q ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCC
Q 019586           61 DSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCK  111 (338)
Q Consensus        61 deAi~~yekAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~  111 (338)
                      ++|+.+|+++++++|+++.+|+++|.++..+|++++|+.+|+++++++|.+
T Consensus        21 ~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~   71 (111)
T 2l6j_A           21 REAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTA   71 (111)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSST
T ss_pred             HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc
Confidence            334444444666666666666666666666666666666666666666665

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=99.05  E-value=2.7e-10  Score=107.95  Aligned_cols=137  Identities=15%  Similarity=0.060  Sum_probs=102.5

Q ss_pred             CCCCHHHHHHHHHHHHHhCC---C---CHHHH-HHHHHHHHcCCHHHHHHHHHhhCc---CCcC----------------
Q 019586            2 QQNNYIEAEDAYRRALSIAP---D---NNKMC-NLGICLMKQGRIGEAKETLRRVKP---AVAD----------------   55 (338)
Q Consensus         2 q~g~~eeAi~~y~kALeldP---d---~a~a~-nLG~~y~~~G~~dEAi~~~~k~~p---~~~d----------------   55 (338)
                      ..|+|++|+.+|++|+.+.+   +   .+..+ ++|.+|..+|++++|+.+++++..   ...+                
T Consensus       113 ~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y  192 (378)
T 3q15_A          113 DQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNY  192 (378)
T ss_dssp             HTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHH
T ss_pred             HHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHH
Confidence            36889999999999998742   2   22234 999999999999999999988322   1111                


Q ss_pred             -CCCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHc-----cCCCCcc---cccchhh
Q 019586           56 -GPRGVDSHLKAYERAQQMLKD------LESEMMNKGGDRVEQSRLFDAFLGSSSIWQ-----PQPCKDH---ILPTTNA  120 (338)
Q Consensus        56 -~lg~~deAi~~yekAL~l~Pd------~~~a~~nLG~~l~~lGr~~eAi~~yekALk-----l~P~~~~---~l~~l~~  120 (338)
                       .+|++++|+.+|++|+++.+.      ...+++++|.+|..+|++++|+.+|+++++     .+|....   .++.+..
T Consensus       193 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~  272 (378)
T 3q15_A          193 DDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLC  272 (378)
T ss_dssp             HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHH
T ss_pred             HHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHH
Confidence             278999999999999987431      346788999999999999999999999998     5665533   2333356


Q ss_pred             hcCccHHHHHhhhhcccC
Q 019586          121 IKTRDDFADENIDSNVDV  138 (338)
Q Consensus       121 ~~~~~~~A~e~~~~al~~  138 (338)
                      ..++.+.|.+.+..++..
T Consensus       273 ~~g~~~~A~~~~~~al~~  290 (378)
T 3q15_A          273 KAGQTQKAFQFIEEGLDH  290 (378)
T ss_dssp             HTTCHHHHHHHHHHHHHH
T ss_pred             HCCCHHHHHHHHHHHHHH
Confidence            778888888887777665

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=99.04  E-value=5.7e-10  Score=90.39  Aligned_cols=95  Identities=13%  Similarity=0.078  Sum_probs=77.2

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHhhCcCCcCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Q 019586           26 MCNLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIW  105 (338)
Q Consensus        26 a~nLG~~y~~~G~~dEAi~~~~k~~p~~~d~lg~~deAi~~yekAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekAL  105 (338)
                      .+.+|.++...|++                     ++|+..|+++++++|+++.+|+.+|.++..+|++++|+.+|++++
T Consensus        20 ~~~~g~~~~~~g~~---------------------~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al   78 (121)
T 1hxi_A           20 PMEEGLSMLKLANL---------------------AEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHAR   78 (121)
T ss_dssp             HHHHHHHHHHTTCH---------------------HHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCH---------------------HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            55899999999998                     566666777999999999999999999999999999999999999


Q ss_pred             ccCCCCcccc---cchhhhcCccHHHHHhhhhcccCCCh
Q 019586          106 QPQPCKDHIL---PTTNAIKTRDDFADENIDSNVDVNPI  141 (338)
Q Consensus       106 kl~P~~~~~l---~~l~~~~~~~~~A~e~~~~al~~~P~  141 (338)
                      +++|.+...+   +.+....++.+.|...+...+..+|.
T Consensus        79 ~l~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~  117 (121)
T 1hxi_A           79 MLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQ  117 (121)
T ss_dssp             HHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred             HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC
Confidence            9999988733   33355667777788888887777765

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=99.04  E-value=1.8e-10  Score=108.42  Aligned_cols=140  Identities=11%  Similarity=0.012  Sum_probs=111.0

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCCHH----HH-HHHHHHHHcCCHHHHHHHHHhhCcC------CcC-------------CC
Q 019586            2 QQNNYIEAEDAYRRALSIAPDNNK----MC-NLGICLMKQGRIGEAKETLRRVKPA------VAD-------------GP   57 (338)
Q Consensus         2 q~g~~eeAi~~y~kALeldPd~a~----a~-nLG~~y~~~G~~dEAi~~~~k~~p~------~~d-------------~l   57 (338)
                      ..|+|++|+.+|+++++++|++..    ++ ++|.+|..+|++++|+.+|+++...      .+.             ..
T Consensus        60 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~  139 (411)
T 4a1s_A           60 NAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVM  139 (411)
T ss_dssp             HTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred             HhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHC
Confidence            468999999999999999999874    34 9999999999999999999983321      111             28


Q ss_pred             CCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHCCC-----------------HHHHHHHHHHHHccCCCCcc-
Q 019586           58 RGVDSHLKAYERAQQM------LKDLESEMMNKGGDRVEQSR-----------------LFDAFLGSSSIWQPQPCKDH-  113 (338)
Q Consensus        58 g~~deAi~~yekAL~l------~Pd~~~a~~nLG~~l~~lGr-----------------~~eAi~~yekALkl~P~~~~-  113 (338)
                      |++++|+.+|++++++      .|....++.++|.+|..+|+                 +++|+.+|++++++.+.... 
T Consensus       140 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~  219 (411)
T 4a1s_A          140 GRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDR  219 (411)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCH
T ss_pred             CCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCH
Confidence            9999999999999999      66677899999999999999                 99999999999887543221 


Q ss_pred             --------cccchhhhcCccHHHHHhhhhcccCCCh
Q 019586          114 --------ILPTTNAIKTRDDFADENIDSNVDVNPI  141 (338)
Q Consensus       114 --------~l~~l~~~~~~~~~A~e~~~~al~~~P~  141 (338)
                              .++.+....++.+.|...+..++...|.
T Consensus       220 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  255 (411)
T 4a1s_A          220 GAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIARE  255 (411)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh
Confidence                    2223355677777777777777665543

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=99.03  E-value=5.4e-11  Score=117.88  Aligned_cols=118  Identities=12%  Similarity=0.128  Sum_probs=94.2

Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcCCHHHHHHHHHhhCcCCcCCCCCHHHHHHHHHHHHHhCCCC-----
Q 019586            4 NNYIEAEDAYRRALSIAPDNNKMC-NLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDL-----   77 (338)
Q Consensus         4 g~~eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k~~p~~~d~lg~~deAi~~yekAL~l~Pd~-----   77 (338)
                      ++|++|+..|++++..+|+.+..+ ++|.+|..+|+|++|+                     .+|++|++++|++     
T Consensus       248 ~~~~~A~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~---------------------~~y~~Al~~~p~~~~~~~  306 (457)
T 1kt0_A          248 KSFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAV---------------------IQYGKIVSWLEMEYGLSE  306 (457)
T ss_dssp             EEEECCCCGGGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHH---------------------HHHHHHHHHHTTCCSCCH
T ss_pred             hhcccCcchhhcCHHHHHHHHHHHHHHHHHHHhCCCHHHHH---------------------HHHHHHHHHhcccccCCh
Confidence            456778888999999999888877 9999999999995554                     4555577777776     


Q ss_pred             ----------HHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCccccc---chhhhcCccHHHHHhhhhcccCCChh
Q 019586           78 ----------ESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDHILP---TTNAIKTRDDFADENIDSNVDVNPIV  142 (338)
Q Consensus        78 ----------~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~~l~---~l~~~~~~~~~A~e~~~~al~~~P~~  142 (338)
                                ..+|+++|.+|..+|+|++|+.+|+++++++|.+...+.   .+....++.+.|...+..++.++|..
T Consensus       307 ~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~  384 (457)
T 1kt0_A          307 KESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQN  384 (457)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC---
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC
Confidence                      799999999999999999999999999999999877433   33566777777888887777766653

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=99.02  E-value=7.6e-10  Score=84.06  Aligned_cols=101  Identities=11%  Similarity=0.006  Sum_probs=83.8

Q ss_pred             CCCCHHHH-HHHHHHHHcCCHHHHHHHHHhhCcCCcCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHH
Q 019586           20 APDNNKMC-NLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAF   98 (338)
Q Consensus        20 dPd~a~a~-nLG~~y~~~G~~dEAi~~~~k~~p~~~d~lg~~deAi~~yekAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi   98 (338)
                      +|++...+ ++|.++...|++                     ++|+.+|++++++.|+...+|+++|.++..+|++++|+
T Consensus         2 ~p~~~~~~~~~~~~~~~~~~~---------------------~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~   60 (112)
T 2kck_A            2 VDQNPEEYYLEGVLQYDAGNY---------------------TESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAV   60 (112)
T ss_dssp             CCSSTTGGGGHHHHHHSSCCH---------------------HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             CCCcHHHHHHHHHHHHHhhhH---------------------HHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHH
Confidence            57777766 999999999999                     55666667799999999999999999999999999999


Q ss_pred             HHHHHHHccCCC--Cccc---ccchhhhc-CccHHHHHhhhhcccCCCh
Q 019586           99 LGSSSIWQPQPC--KDHI---LPTTNAIK-TRDDFADENIDSNVDVNPI  141 (338)
Q Consensus        99 ~~yekALkl~P~--~~~~---l~~l~~~~-~~~~~A~e~~~~al~~~P~  141 (338)
                      .+|+++++++|.  +...   ++.+.... ++.+.+.+.+...+...|.
T Consensus        61 ~~~~~a~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~p~  109 (112)
T 2kck_A           61 DCYNYVINVIEDEYNKDVWAAKADALRYIEGKEVEAEIAEARAKLEHHH  109 (112)
T ss_dssp             HHHHHHHHTSCCTTCHHHHHHHHHHHTTCSSCSHHHHHHHHHHGGGCCC
T ss_pred             HHHHHHHHhCcccchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcccC
Confidence            999999999999  7653   23335577 7888888888887776664

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=99.02  E-value=7.5e-10  Score=92.60  Aligned_cols=99  Identities=9%  Similarity=-0.005  Sum_probs=79.9

Q ss_pred             CCHHHH-HHHHHHHHcCCHHHHHHHHHhhCcCCcCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHH
Q 019586           22 DNNKMC-NLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLG  100 (338)
Q Consensus        22 d~a~a~-nLG~~y~~~G~~dEAi~~~~k~~p~~~d~lg~~deAi~~yekAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~  100 (338)
                      ..+..+ .+|.+|...|+|                     ++|+.+|+++++++|+++.+|+++|.+|..+|++++|+.+
T Consensus         9 ~~a~~~~~~g~~~~~~g~~---------------------~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~   67 (164)
T 3sz7_A            9 PESDKLKSEGNAAMARKEY---------------------SKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAED   67 (164)
T ss_dssp             HHHHHHHHHHHHHHHTTCH---------------------HHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHcCCH---------------------HHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHH
Confidence            344444 999999999999                     5566666779999999999999999999999999999999


Q ss_pred             HHHHHccCCCCcccc---cchhhhcCccHHHHHhhhhcccCCCh
Q 019586          101 SSSIWQPQPCKDHIL---PTTNAIKTRDDFADENIDSNVDVNPI  141 (338)
Q Consensus       101 yekALkl~P~~~~~l---~~l~~~~~~~~~A~e~~~~al~~~P~  141 (338)
                      |+++++++|.+...+   +.+....++.+.|...+..++.++|.
T Consensus        68 ~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~  111 (164)
T 3sz7_A           68 AELATVVDPKYSKAWSRLGLARFDMADYKGAKEAYEKGIEAEGN  111 (164)
T ss_dssp             HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHSS
T ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Confidence            999999999987733   33355667777777777766655554

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=99.02  E-value=7e-10  Score=101.79  Aligned_cols=135  Identities=9%  Similarity=-0.017  Sum_probs=84.3

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCCHH------HH-HHHHHHHHcCCHHHHHHHHHhhCc---CCcC----------------
Q 019586            2 QQNNYIEAEDAYRRALSIAPDNNK------MC-NLGICLMKQGRIGEAKETLRRVKP---AVAD----------------   55 (338)
Q Consensus         2 q~g~~eeAi~~y~kALeldPd~a~------a~-nLG~~y~~~G~~dEAi~~~~k~~p---~~~d----------------   55 (338)
                      ..|+|++|+.+|+++++..+....      ++ .+|.++...|++++|+.+|+++..   ...+                
T Consensus        87 ~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~  166 (293)
T 3u3w_A           87 KQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYA  166 (293)
T ss_dssp             HTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHH
T ss_pred             HHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHH
Confidence            356777777777777777665433      55 777777777777777777777322   1111                


Q ss_pred             CCCCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCcc---------cccchh
Q 019586           56 GPRGVDSHLKAYERAQQML-------KDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDH---------ILPTTN  119 (338)
Q Consensus        56 ~lg~~deAi~~yekAL~l~-------Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~---------~l~~l~  119 (338)
                      .+|++++|+.+|++|+++.       +....+++++|.+|..+|++++|+.+|++++++.+....         .++.+.
T Consensus       167 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~  246 (293)
T 3u3w_A          167 ENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECL  246 (293)
T ss_dssp             HTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHH
Confidence            1567777777777777421       223356777777777777777777777777777654422         122223


Q ss_pred             hhcCcc-HHHHHhhhhcc
Q 019586          120 AIKTRD-DFADENIDSNV  136 (338)
Q Consensus       120 ~~~~~~-~~A~e~~~~al  136 (338)
                      ...++. +.|.+.+..++
T Consensus       247 ~~~g~~~~~A~~~~~~Al  264 (293)
T 3u3w_A          247 RKLEYEEAEIEDAYKKAS  264 (293)
T ss_dssp             HHTTCCHHHHHHHHHHHH
T ss_pred             HHhCCcHHHHHHHHHHHH
Confidence            455533 56666666554

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=99.00  E-value=2.5e-10  Score=105.95  Aligned_cols=139  Identities=12%  Similarity=0.037  Sum_probs=106.2

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCCHH----HH-HHHHHHHHcCCHHHHHHHHHhhCcC------CcC-------------CC
Q 019586            2 QQNNYIEAEDAYRRALSIAPDNNK----MC-NLGICLMKQGRIGEAKETLRRVKPA------VAD-------------GP   57 (338)
Q Consensus         2 q~g~~eeAi~~y~kALeldPd~a~----a~-nLG~~y~~~G~~dEAi~~~~k~~p~------~~d-------------~l   57 (338)
                      ..|++++|+.+|++++++.|++..    .+ .+|.+|...|++++|+.+|+++...      .+.             ..
T Consensus        21 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~  100 (406)
T 3sf4_A           21 KSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVL  100 (406)
T ss_dssp             HTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred             HhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHc
Confidence            468999999999999999999854    34 9999999999999999999983221      111             27


Q ss_pred             CCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHCCC--------------------HHHHHHHHHHHHccCCCC
Q 019586           58 RGVDSHLKAYERAQQMLKDL------ESEMMNKGGDRVEQSR--------------------LFDAFLGSSSIWQPQPCK  111 (338)
Q Consensus        58 g~~deAi~~yekAL~l~Pd~------~~a~~nLG~~l~~lGr--------------------~~eAi~~yekALkl~P~~  111 (338)
                      |++++|+.+|++++++.|..      ..++.++|.+|...|+                    +++|+.+|++++++.+..
T Consensus       101 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~  180 (406)
T 3sf4_A          101 GNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTAL  180 (406)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             CCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhc
Confidence            89999999999999987653      4588999999999999                    999999999988874332


Q ss_pred             cc---------cccchhhhcCccHHHHHhhhhcccCCC
Q 019586          112 DH---------ILPTTNAIKTRDDFADENIDSNVDVNP  140 (338)
Q Consensus       112 ~~---------~l~~l~~~~~~~~~A~e~~~~al~~~P  140 (338)
                      ..         .++.+....++.+.|...+..++...|
T Consensus       181 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  218 (406)
T 3sf4_A          181 GDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAK  218 (406)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHH
T ss_pred             cCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHH
Confidence            21         222234566777777777776665443

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=98.99  E-value=1.6e-09  Score=99.30  Aligned_cols=136  Identities=10%  Similarity=-0.003  Sum_probs=102.5

Q ss_pred             CCCCHHHHHHHHHHHHHhCCC------CHH-HHHHHHHHHHcCCHHHHHHHHHhhCc---CC--cC--------------
Q 019586            2 QQNNYIEAEDAYRRALSIAPD------NNK-MCNLGICLMKQGRIGEAKETLRRVKP---AV--AD--------------   55 (338)
Q Consensus         2 q~g~~eeAi~~y~kALeldPd------~a~-a~nLG~~y~~~G~~dEAi~~~~k~~p---~~--~d--------------   55 (338)
                      ..|+|++|+..|.++++..+.      ... .+.+|.++..+|++++|+.+|+++..   ..  ..              
T Consensus        87 ~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~  166 (293)
T 2qfc_A           87 KQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYA  166 (293)
T ss_dssp             HTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHHHH
T ss_pred             HhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHH
Confidence            468999999999999998764      344 45899999999999999999998432   11  11              


Q ss_pred             CCCCHHHHHHHHHHHH---HhCCCCH----HHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCcc---------cccchh
Q 019586           56 GPRGVDSHLKAYERAQ---QMLKDLE----SEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDH---------ILPTTN  119 (338)
Q Consensus        56 ~lg~~deAi~~yekAL---~l~Pd~~----~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~---------~l~~l~  119 (338)
                      ..|++++|+.+|++|+   +..|+..    .+++++|.+|..+|++++|+.+|++++++.+....         .++.+.
T Consensus       167 ~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y  246 (293)
T 2qfc_A          167 ENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECL  246 (293)
T ss_dssp             HTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHH
Confidence            2789999999999999   4556643    68899999999999999999999999988654221         122234


Q ss_pred             hhcCccHHH-HHhhhhccc
Q 019586          120 AIKTRDDFA-DENIDSNVD  137 (338)
Q Consensus       120 ~~~~~~~~A-~e~~~~al~  137 (338)
                      ...++.+.| ...+..++.
T Consensus       247 ~~~g~~~~Ai~~~~~~Al~  265 (293)
T 2qfc_A          247 RKLEYEEAEIEDAYKKASF  265 (293)
T ss_dssp             HHTTCCHHHHHHHHHHHHH
T ss_pred             HHcCCcHHHHHHHHHHHHH
Confidence            567777777 665666553

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=98.99  E-value=1.4e-09  Score=86.95  Aligned_cols=103  Identities=11%  Similarity=-0.024  Sum_probs=83.4

Q ss_pred             HhCCCCHHHH-HHHHHHHHcCCHHHHHHHHHhhCcCCcCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHH
Q 019586           18 SIAPDNNKMC-NLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFD   96 (338)
Q Consensus        18 eldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k~~p~~~d~lg~~deAi~~yekAL~l~Pd~~~a~~nLG~~l~~lGr~~e   96 (338)
                      ..+|..+..+ ++|.++...|+|                     ++|+.+|+++++++|+++.+|+++|.++..+|++++
T Consensus         3 ~~~~~~~~~~~~~g~~~~~~~~~---------------------~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~   61 (137)
T 3q49_B            3 HMKSPSAQELKEQGNRLFVGRKY---------------------PEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQ   61 (137)
T ss_dssp             ---CCCHHHHHHHHHHHHHTTCH---------------------HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred             CCccccHHHHHHHHHHHHHhCcH---------------------HHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHH
Confidence            3567777766 999999999999                     556666677999999999999999999999999999


Q ss_pred             HHHHHHHHHccCCCCccc---ccchhhhcCccHHHHHhhhhcccCCCh
Q 019586           97 AFLGSSSIWQPQPCKDHI---LPTTNAIKTRDDFADENIDSNVDVNPI  141 (338)
Q Consensus        97 Ai~~yekALkl~P~~~~~---l~~l~~~~~~~~~A~e~~~~al~~~P~  141 (338)
                      |+.+|+++++++|.++..   ++.+....++.+.|...+..++..+|.
T Consensus        62 A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~  109 (137)
T 3q49_B           62 ALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKE  109 (137)
T ss_dssp             HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCchhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHChh
Confidence            999999999999998763   333355677777788777777765554

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=98.99  E-value=7.7e-10  Score=86.35  Aligned_cols=74  Identities=14%  Similarity=0.012  Sum_probs=64.0

Q ss_pred             hCCCCHHHH-HHHHHHHHcCCHHHHHHHHHhhCcCCcCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHH
Q 019586           19 IAPDNNKMC-NLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDA   97 (338)
Q Consensus        19 ldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k~~p~~~d~lg~~deAi~~yekAL~l~Pd~~~a~~nLG~~l~~lGr~~eA   97 (338)
                      .+|++..++ ++|.+|..+|++                     ++|+.+|+++++++|+++.+|+++|.+|..+|++++|
T Consensus         2 ~~p~~~~~~~~lg~~~~~~g~~---------------------~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A   60 (100)
T 3ma5_A            2 EDPEDPFTRYALAQEHLKHDNA---------------------SRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDA   60 (100)
T ss_dssp             ---CCHHHHHHHHHHHHHTTCH---------------------HHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHH
T ss_pred             CCccCHHHHHHHHHHHHHcCCH---------------------HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHH
Confidence            478899876 999999999999                     5566666779999999999999999999999999999


Q ss_pred             HHHHHHHHccCCCCcc
Q 019586           98 FLGSSSIWQPQPCKDH  113 (338)
Q Consensus        98 i~~yekALkl~P~~~~  113 (338)
                      +.+|++++++.|....
T Consensus        61 ~~~~~~al~l~~~~~~   76 (100)
T 3ma5_A           61 IDTYAQGIEVAREEGT   76 (100)
T ss_dssp             HHHHHHHHHHHHHHSC
T ss_pred             HHHHHHHHhhhhcCCc
Confidence            9999999999876544

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=98.99  E-value=1.8e-09  Score=83.68  Aligned_cols=114  Identities=20%  Similarity=0.209  Sum_probs=90.6

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHhh---CcCCcC----------CCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC
Q 019586           27 CNLGICLMKQGRIGEAKETLRRV---KPAVAD----------GPRGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQSR   93 (338)
Q Consensus        27 ~nLG~~y~~~G~~dEAi~~~~k~---~p~~~d----------~lg~~deAi~~yekAL~l~Pd~~~a~~nLG~~l~~lGr   93 (338)
                      +++|.++...|++++|+..|+++   .|....          ..|++++|+.+|++++++.|+...+++.+|.++...|+
T Consensus         5 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~   84 (136)
T 2fo7_A            5 YNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGD   84 (136)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTC
T ss_pred             HHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHhcC
Confidence            38999999999999999999994   343332          26899999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHccCCCCcccc---cchhhhcCccHHHHHhhhhcccCCC
Q 019586           94 LFDAFLGSSSIWQPQPCKDHIL---PTTNAIKTRDDFADENIDSNVDVNP  140 (338)
Q Consensus        94 ~~eAi~~yekALkl~P~~~~~l---~~l~~~~~~~~~A~e~~~~al~~~P  140 (338)
                      +++|+.+|+++++..|.+...+   +.+....++.+.+...+...+..+|
T Consensus        85 ~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~  134 (136)
T 2fo7_A           85 YDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP  134 (136)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCC
Confidence            9999999999999999876522   2223455555556555555544443

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=98.97  E-value=1.8e-10  Score=99.32  Aligned_cols=119  Identities=17%  Similarity=0.049  Sum_probs=83.4

Q ss_pred             CCCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcCCHHHHHHHHHhhCcCCcCCCCCHHHHHHHHHHHHHhCCCCH---
Q 019586            3 QNNYIEAEDAYRRALSIAPDNNKMC-NLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDLE---   78 (338)
Q Consensus         3 ~g~~eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k~~p~~~d~lg~~deAi~~yekAL~l~Pd~~---   78 (338)
                      .|+|++|.+.|.......+.....+ ++|.++...|+|++|                     +.+|++++++.|+.+   
T Consensus        17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A---------------------~~~~~~al~~~~~~~~~~   75 (198)
T 2fbn_A           17 LYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEA---------------------IVKYKEALDFFIHTEEWD   75 (198)
T ss_dssp             -----CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHH---------------------HHHHHHHHHTTTTCTTCC
T ss_pred             hhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHH---------------------HHHHHHHHHHHhcccccc
Confidence            3455556666655555444455544 899999999999555                     555555777766665   


Q ss_pred             -------------HHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCcccc---cchhhhcCccHHHHHhhhhcccCCChh
Q 019586           79 -------------SEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDHIL---PTTNAIKTRDDFADENIDSNVDVNPIV  142 (338)
Q Consensus        79 -------------~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~~l---~~l~~~~~~~~~A~e~~~~al~~~P~~  142 (338)
                                   .+|+++|.+|..+|++++|+.+|+++++++|.+...+   +.+....++.+.|...+..++.++|..
T Consensus        76 ~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~  155 (198)
T 2fbn_A           76 DQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNN  155 (198)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTC
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCc
Confidence                         8999999999999999999999999999999987633   233456666677777777666655543

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=98.96  E-value=7.9e-10  Score=88.46  Aligned_cols=109  Identities=14%  Similarity=0.059  Sum_probs=87.2

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCCH--H----HH-HHHHHHHHcCCHHHHHHHHHhhCc---CCcC----------------
Q 019586            2 QQNNYIEAEDAYRRALSIAPDNN--K----MC-NLGICLMKQGRIGEAKETLRRVKP---AVAD----------------   55 (338)
Q Consensus         2 q~g~~eeAi~~y~kALeldPd~a--~----a~-nLG~~y~~~G~~dEAi~~~~k~~p---~~~d----------------   55 (338)
                      ..|++++|+.+|++++++.+...  .    .+ ++|.+|..+|++++|+.+|+++..   ...+                
T Consensus        21 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~  100 (164)
T 3ro3_A           21 LLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYT  100 (164)
T ss_dssp             HTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHH
Confidence            36899999999999999865322  1    33 999999999999999999999322   2211                


Q ss_pred             CCCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCC
Q 019586           56 GPRGVDSHLKAYERAQQMLKD------LESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPC  110 (338)
Q Consensus        56 ~lg~~deAi~~yekAL~l~Pd------~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~  110 (338)
                      ..|++++|+.+|++++++.+.      ...++.++|.++..+|++++|+.+|++++++...
T Consensus       101 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~  161 (164)
T 3ro3_A          101 LLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE  161 (164)
T ss_dssp             HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTT
T ss_pred             HHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence            278999999999999987432      2467889999999999999999999999877543

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=98.95  E-value=1.9e-10  Score=108.28  Aligned_cols=138  Identities=14%  Similarity=0.086  Sum_probs=75.4

Q ss_pred             CCCHHHHHHHHHHHHHh------CCCCHHHH-HHHHHHHHcCCHHHHHHHHHhhCcC------CcC-------------C
Q 019586            3 QNNYIEAEDAYRRALSI------APDNNKMC-NLGICLMKQGRIGEAKETLRRVKPA------VAD-------------G   56 (338)
Q Consensus         3 ~g~~eeAi~~y~kALel------dPd~a~a~-nLG~~y~~~G~~dEAi~~~~k~~p~------~~d-------------~   56 (338)
                      .|++++|+.+|++++++      .|.....+ ++|.+|..+|++++|+.+|+++...      .+.             .
T Consensus        99 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~  178 (411)
T 4a1s_A           99 LGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHA  178 (411)
T ss_dssp             HTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHH
Confidence            45666666666666666      66666654 6666666666666666666662211      000             1


Q ss_pred             CCC-----------------HHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCcc
Q 019586           57 PRG-----------------VDSHLKAYERAQQML------KDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDH  113 (338)
Q Consensus        57 lg~-----------------~deAi~~yekAL~l~------Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~  113 (338)
                      .|+                 +++|+.+|++++++.      +....++.++|.+|..+|++++|+.+|++++++.|....
T Consensus       179 ~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  258 (411)
T 4a1s_A          179 KGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGD  258 (411)
T ss_dssp             HHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC
T ss_pred             cCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCC
Confidence            445                 666666666666553      223345666666666666666666666666666554322


Q ss_pred             ---------cccchhhhcCccHHHHHhhhhcccCCC
Q 019586          114 ---------ILPTTNAIKTRDDFADENIDSNVDVNP  140 (338)
Q Consensus       114 ---------~l~~l~~~~~~~~~A~e~~~~al~~~P  140 (338)
                               .++.+....++.+.|...+..++...|
T Consensus       259 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  294 (411)
T 4a1s_A          259 RAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAV  294 (411)
T ss_dssp             HHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHH
Confidence                     112223445555555555555444333

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=98.95  E-value=9.1e-10  Score=102.23  Aligned_cols=110  Identities=10%  Similarity=0.071  Sum_probs=91.0

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCC--H----HHH-HHHHHHHHcCCHHHHHHHHHhhCcCCc---C----------------
Q 019586            2 QQNNYIEAEDAYRRALSIAPDN--N----KMC-NLGICLMKQGRIGEAKETLRRVKPAVA---D----------------   55 (338)
Q Consensus         2 q~g~~eeAi~~y~kALeldPd~--a----~a~-nLG~~y~~~G~~dEAi~~~~k~~p~~~---d----------------   55 (338)
                      .+|++++|+.+|++|+++.+..  .    ..+ ++|.+|.. |++++|+.+|+++...++   .                
T Consensus        88 ~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~  166 (307)
T 2ifu_A           88 DLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLV  166 (307)
T ss_dssp             HTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             hCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHH
Confidence            3689999999999999985432  2    234 99999998 999999999999432211   1                


Q ss_pred             CCCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCcc
Q 019586           56 GPRGVDSHLKAYERAQQMLKDL------ESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDH  113 (338)
Q Consensus        56 ~lg~~deAi~~yekAL~l~Pd~------~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~  113 (338)
                      .+|++++|+.+|++++++.|+.      ..+++++|.++..+|++++|+.+|++++ ++|....
T Consensus       167 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~~~~  229 (307)
T 2ifu_A          167 RQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-SIPGFSG  229 (307)
T ss_dssp             HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TSTTSTT
T ss_pred             HcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCCCCCC
Confidence            2899999999999999987654      3578899999999999999999999999 9998654

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=98.94  E-value=8e-09  Score=94.67  Aligned_cols=111  Identities=9%  Similarity=-0.054  Sum_probs=64.5

Q ss_pred             HHHHHHHHcCCHHHHHHHHHhhC---cCCcC----------------CCCCHHHHHHHHHHHHHhCCCC------HHHHH
Q 019586           28 NLGICLMKQGRIGEAKETLRRVK---PAVAD----------------GPRGVDSHLKAYERAQQMLKDL------ESEMM   82 (338)
Q Consensus        28 nLG~~y~~~G~~dEAi~~~~k~~---p~~~d----------------~lg~~deAi~~yekAL~l~Pd~------~~a~~   82 (338)
                      +.+..+...|+|++|+..|.++.   +....                ..|++++|+.+|++|+++.+..      ..+|+
T Consensus        80 ~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  159 (293)
T 2qfc_A           80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN  159 (293)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHH
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHH
Confidence            66667777777777777766522   11110                2457777777777777654332      45666


Q ss_pred             HHHHHHHHCCCHHHHHHHHHHHH---ccCCCCcc-------cccchhhhcCccHHHHHhhhhcccC
Q 019586           83 NKGGDRVEQSRLFDAFLGSSSIW---QPQPCKDH-------ILPTTNAIKTRDDFADENIDSNVDV  138 (338)
Q Consensus        83 nLG~~l~~lGr~~eAi~~yekAL---kl~P~~~~-------~l~~l~~~~~~~~~A~e~~~~al~~  138 (338)
                      ++|.+|..+|++++|+.+|++++   +..|.+..       .++.+....++.+.|.+.+..++..
T Consensus       160 ~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~  225 (293)
T 2qfc_A          160 AIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEI  225 (293)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHH
Confidence            77777777777777777777776   33443321       1222245566666666666655544

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=98.94  E-value=3.5e-10  Score=101.06  Aligned_cols=136  Identities=12%  Similarity=0.034  Sum_probs=103.5

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCCHH----HH-HHHHHHHHcCCHHHHHHHHHhhCcC------CcC-------------CC
Q 019586            2 QQNNYIEAEDAYRRALSIAPDNNK----MC-NLGICLMKQGRIGEAKETLRRVKPA------VAD-------------GP   57 (338)
Q Consensus         2 q~g~~eeAi~~y~kALeldPd~a~----a~-nLG~~y~~~G~~dEAi~~~~k~~p~------~~d-------------~l   57 (338)
                      ..|++++|+.+|+++++++|++..    .+ .+|.+|...|++++|+.+|+++...      .+.             ..
T Consensus        17 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~   96 (338)
T 3ro2_A           17 KSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVL   96 (338)
T ss_dssp             HTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT
T ss_pred             HhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHc
Confidence            468999999999999999999854    34 9999999999999999999983221      111             28


Q ss_pred             CCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHCCC--------------------HHHHHHHHHHHHccCCCC
Q 019586           58 RGVDSHLKAYERAQQMLKDL------ESEMMNKGGDRVEQSR--------------------LFDAFLGSSSIWQPQPCK  111 (338)
Q Consensus        58 g~~deAi~~yekAL~l~Pd~------~~a~~nLG~~l~~lGr--------------------~~eAi~~yekALkl~P~~  111 (338)
                      |++++|+..|++++++.+..      ..++.++|.++..+|+                    +++|+.+|++++.+.+..
T Consensus        97 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~  176 (338)
T 3ro2_A           97 GNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTAL  176 (338)
T ss_dssp             TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhc
Confidence            99999999999999987654      3488999999999999                    999999999988764322


Q ss_pred             cc---------cccchhhhcCccHHHHHhhhhccc
Q 019586          112 DH---------ILPTTNAIKTRDDFADENIDSNVD  137 (338)
Q Consensus       112 ~~---------~l~~l~~~~~~~~~A~e~~~~al~  137 (338)
                      ..         .++.+....++.+.+...+..++.
T Consensus       177 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~  211 (338)
T 3ro2_A          177 GDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLL  211 (338)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence            11         112223455566666666655554

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=98.94  E-value=1.1e-09  Score=95.65  Aligned_cols=96  Identities=8%  Similarity=-0.061  Sum_probs=79.3

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHhhCcCCcCCCCCHHHHHHHHHHHHHhCCC-------CHH-----HHHHHHHHHHHCCCH
Q 019586           27 CNLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKD-------LES-----EMMNKGGDRVEQSRL   94 (338)
Q Consensus        27 ~nLG~~y~~~G~~dEAi~~~~k~~p~~~d~lg~~deAi~~yekAL~l~Pd-------~~~-----a~~nLG~~l~~lGr~   94 (338)
                      .++|.++...|+|                     ++|+.+|++||+++|+       +..     +|+|+|.++..+|+|
T Consensus        15 ~~~G~~l~~~g~~---------------------eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~   73 (159)
T 2hr2_A           15 LSDAQRQLVAGEY---------------------DEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSF   73 (159)
T ss_dssp             HHHHHHHHHHTCH---------------------HHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHHCCCH---------------------HHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCH
Confidence            3999999999999                     4555556668888887       443     999999999999999


Q ss_pred             HHHHHHHHHHHcc-------CCCCcccc----cc---hhhhcCccHHHHHhhhhcccCCChhh
Q 019586           95 FDAFLGSSSIWQP-------QPCKDHIL----PT---TNAIKTRDDFADENIDSNVDVNPIVL  143 (338)
Q Consensus        95 ~eAi~~yekALkl-------~P~~~~~l----~~---l~~~~~~~~~A~e~~~~al~~~P~~~  143 (338)
                      ++|+.+|+++|++       +|+++..+    ..   .....++.+.|...+..++.++|...
T Consensus        74 ~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~  136 (159)
T 2hr2_A           74 DEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERK  136 (159)
T ss_dssp             HHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcH
Confidence            9999999999999       99987755    33   35678888889999999888887643

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=98.93  E-value=4.4e-09  Score=104.37  Aligned_cols=110  Identities=8%  Similarity=0.055  Sum_probs=63.5

Q ss_pred             CCCHHHHHHHHHHHHHhCCCCH-HHH-HHHHHHHHcCCHHHHHHHHHhhCcCCcC--------------CCCCHHHHHHH
Q 019586            3 QNNYIEAEDAYRRALSIAPDNN-KMC-NLGICLMKQGRIGEAKETLRRVKPAVAD--------------GPRGVDSHLKA   66 (338)
Q Consensus         3 ~g~~eeAi~~y~kALeldPd~a-~a~-nLG~~y~~~G~~dEAi~~~~k~~p~~~d--------------~lg~~deAi~~   66 (338)
                      .|++++|+..|+++++++|.+. ..| ++|.++..+|++++|+..|+++....+.              ..|++++|..+
T Consensus       334 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~a~~~~~~~~~~~~A~~~  413 (530)
T 2ooe_A          334 RMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKI  413 (530)
T ss_dssp             TTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHHHHHHHHHHHHHTCCHHHHHHH
T ss_pred             cCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHcCChhHHHHH
Confidence            4556666666666666666553 233 6666666666666666666663222111              14566666666


Q ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCc
Q 019586           67 YERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKD  112 (338)
Q Consensus        67 yekAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~  112 (338)
                      |+++++..|+++.+|..+|.++...|++++|..+|++++...|.++
T Consensus       414 ~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~  459 (530)
T 2ooe_A          414 FELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPP  459 (530)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCG
T ss_pred             HHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCH
Confidence            6666666666666666666666666666666666666666555443

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=98.93  E-value=2.2e-09  Score=101.47  Aligned_cols=109  Identities=10%  Similarity=0.022  Sum_probs=92.6

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCCH-------HHH-HHHHHHHHcCCHHHHHHHHHhhC---cCCcC---------------
Q 019586            2 QQNNYIEAEDAYRRALSIAPDNN-------KMC-NLGICLMKQGRIGEAKETLRRVK---PAVAD---------------   55 (338)
Q Consensus         2 q~g~~eeAi~~y~kALeldPd~a-------~a~-nLG~~y~~~G~~dEAi~~~~k~~---p~~~d---------------   55 (338)
                      ..|++++|+.+|++|+++.+...       ..+ ++|.+|..+|++++|+.+|+++.   +...+               
T Consensus       155 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y  234 (383)
T 3ulq_A          155 YMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCK  234 (383)
T ss_dssp             HTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Confidence            46899999999999999855432       233 99999999999999999999943   22221               


Q ss_pred             -CCCCHHHHHHHHHHHHH-----hC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCC
Q 019586           56 -GPRGVDSHLKAYERAQQ-----ML-KDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPC  110 (338)
Q Consensus        56 -~lg~~deAi~~yekAL~-----l~-Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~  110 (338)
                       .+|++++|+.+|++|++     .+ |..+.+++++|.+|..+|++++|+.+|++++++.+.
T Consensus       235 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~  296 (383)
T 3ulq_A          235 NSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQK  296 (383)
T ss_dssp             HHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence             28999999999999999     45 788899999999999999999999999999998654

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=98.92  E-value=1.4e-09  Score=83.02  Aligned_cols=50  Identities=16%  Similarity=-0.005  Sum_probs=25.7

Q ss_pred             HHHHHHHHHhCCCCHH-HHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCcc
Q 019586           64 LKAYERAQQMLKDLES-EMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDH  113 (338)
Q Consensus        64 i~~yekAL~l~Pd~~~-a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~  113 (338)
                      +..|+++++++|+++. +|+++|.+|..+|++++|+.+|+++++++|++..
T Consensus        20 ~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~   70 (99)
T 2kc7_A           20 LQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPA   70 (99)
T ss_dssp             HHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTH
T ss_pred             HHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHH
Confidence            3333335555555555 5555555555555555555555555555555444

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=98.90  E-value=9e-10  Score=101.81  Aligned_cols=105  Identities=10%  Similarity=-0.138  Sum_probs=93.8

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcCCHHHHHHHHHh---hCcCCcC----------CCCCHHHHHHHH
Q 019586            2 QQNNYIEAEDAYRRALSIAPDNNKMC-NLGICLMKQGRIGEAKETLRR---VKPAVAD----------GPRGVDSHLKAY   67 (338)
Q Consensus         2 q~g~~eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k---~~p~~~d----------~lg~~deAi~~y   67 (338)
                      +.|++++|+.+|++++..+|+....+ +.+..+..+++.++|+..|++   ..|++++          ..|++++|+..|
T Consensus       163 ~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l  242 (287)
T 3qou_A          163 ALNRSEDAEAVLXTIPLQDQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELL  242 (287)
T ss_dssp             HTTCHHHHHHHHTTSCGGGCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HCCCHHHHHHHHHhCchhhcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHH
Confidence            47999999999999999999655544 888889999999999999999   4566555          389999999999


Q ss_pred             HHHHHhCCCC--HHHHHHHHHHHHHCCCHHHHHHHHHHHHc
Q 019586           68 ERAQQMLKDL--ESEMMNKGGDRVEQSRLFDAFLGSSSIWQ  106 (338)
Q Consensus        68 ekAL~l~Pd~--~~a~~nLG~~l~~lGr~~eAi~~yekALk  106 (338)
                      +++++.+|++  ..++.++|.++..+|+.++|..+|++++.
T Consensus       243 ~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~a~~~~r~al~  283 (287)
T 3qou_A          243 FGHLRXDLTAADGQTRXTFQEILAALGTGDALASXYRRQLY  283 (287)
T ss_dssp             HHHHHHCTTGGGGHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHhcccccccchHHHHHHHHHHHcCCCCcHHHHHHHHHH
Confidence            9999999999  89999999999999999999999999875

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=98.89  E-value=3.4e-09  Score=97.20  Aligned_cols=104  Identities=6%  Similarity=-0.013  Sum_probs=74.1

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCCHH------HH-HHHHHHHHcCCHHHHHHHHHhhCc------CCcC-------------
Q 019586            2 QQNNYIEAEDAYRRALSIAPDNNK------MC-NLGICLMKQGRIGEAKETLRRVKP------AVAD-------------   55 (338)
Q Consensus         2 q~g~~eeAi~~y~kALeldPd~a~------a~-nLG~~y~~~G~~dEAi~~~~k~~p------~~~d-------------   55 (338)
                      ..|++++|+.+|++|+.+.+...+      .+ ++|.+|..+|++++|+.+|+++..      .+..             
T Consensus       127 ~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y  206 (293)
T 3u3w_A          127 KKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKAL  206 (293)
T ss_dssp             TSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHH
T ss_pred             cccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHH
Confidence            356788888888888886443222      23 888888888888888888888431      1111             


Q ss_pred             -CCCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHCCC-HHHHHHHHHHHH
Q 019586           56 -GPRGVDSHLKAYERAQQMLKDL------ESEMMNKGGDRVEQSR-LFDAFLGSSSIW  105 (338)
Q Consensus        56 -~lg~~deAi~~yekAL~l~Pd~------~~a~~nLG~~l~~lGr-~~eAi~~yekAL  105 (338)
                       .+|++++|+.+|++|+++.+..      +.+|+++|.+|..+|+ +++|+.+|++|+
T Consensus       207 ~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al  264 (293)
T 3u3w_A          207 YLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKAS  264 (293)
T ss_dssp             HHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred             HHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence             2778888888888888876443      6778888888888884 588888888874

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=98.89  E-value=6.5e-09  Score=106.55  Aligned_cols=164  Identities=11%  Similarity=-0.031  Sum_probs=119.4

Q ss_pred             HHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcCC----------HHHHHHHHHhh---CcCCcC----------CCC--C
Q 019586            6 YIEAEDAYRRALSIAPDNNKMC-NLGICLMKQGR----------IGEAKETLRRV---KPAVAD----------GPR--G   59 (338)
Q Consensus         6 ~eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G~----------~dEAi~~~~k~---~p~~~d----------~lg--~   59 (338)
                      .++|+.+|.++|+++|++..+| ++|.++...|+          +++|+..+.++   .|.+..          .++  +
T Consensus        45 ~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l~~~~  124 (567)
T 1dce_A           45 DESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPN  124 (567)
T ss_dssp             SHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCC
T ss_pred             CHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccccc
Confidence            4789999999999999999988 99999999999          99999999994   444433          266  7


Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC-CHHHHHHHHHHHHccCCCCcccccchhhhcCccHHHHHhhhhcccC
Q 019586           60 VDSHLKAYERAQQMLKDLESEMMNKGGDRVEQS-RLFDAFLGSSSIWQPQPCKDHILPTTNAIKTRDDFADENIDSNVDV  138 (338)
Q Consensus        60 ~deAi~~yekAL~l~Pd~~~a~~nLG~~l~~lG-r~~eAi~~yekALkl~P~~~~~l~~l~~~~~~~~~A~e~~~~al~~  138 (338)
                      +++|+.+++++++++|.+..+|+++|.++...| .+++|++++.++++.+|.+...+....       +....+......
T Consensus       125 ~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~-------~ll~~l~~~~~~  197 (567)
T 1dce_A          125 WARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRS-------CLLPQLHPQPDS  197 (567)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHH-------HHHHHHSCCCCS
T ss_pred             HHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHH-------HHHHhhcccccc
Confidence            799999999999999999999999999999999 899999999999999999876322110       000000000000


Q ss_pred             CCh-hhhhhhhhhhhcchHHHHHHhHhHHHHhhchhhhh
Q 019586          139 NPI-VLSKHRSVKKLFPTANAIKTQENFADENINANIVV  176 (338)
Q Consensus       139 ~P~-~~~K~~~~~kl~~~~~ai~~~~~~~e~y~nlg~~~  176 (338)
                      .+. .......-..+..+.+||...|+...++++++.+.
T Consensus       198 ~~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll  236 (567)
T 1dce_A          198 GPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLL  236 (567)
T ss_dssp             SSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHH
T ss_pred             cccccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHH
Confidence            000 00001111223344567888888888888888866

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=98.89  E-value=1.3e-08  Score=75.45  Aligned_cols=70  Identities=30%  Similarity=0.485  Sum_probs=60.4

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcCCHHHHHHHHHhhCcCCcCCCCCHHHHHHHHHHHHHhCCCCHHH
Q 019586            2 QQNNYIEAEDAYRRALSIAPDNNKMC-NLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDLESE   80 (338)
Q Consensus         2 q~g~~eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k~~p~~~d~lg~~deAi~~yekAL~l~Pd~~~a   80 (338)
                      ..|++++|+.+|+++++++|++...+ ++|.+|..+|++                     ++|+.+|+++++++|+++.+
T Consensus        21 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~---------------------~~A~~~~~~a~~~~p~~~~~   79 (91)
T 1na3_A           21 KQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDY---------------------DEAIEYYQKALELDPNNAEA   79 (91)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH---------------------HHHHHHHHHHHHHCTTCHHH
T ss_pred             HccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhH---------------------HHHHHHHHHHHhcCCCCHHH
Confidence            46889999999999999999888866 999999999888                     56666677799999999999


Q ss_pred             HHHHHHHHHHCC
Q 019586           81 MMNKGGDRVEQS   92 (338)
Q Consensus        81 ~~nLG~~l~~lG   92 (338)
                      +.++|.++..+|
T Consensus        80 ~~~l~~~~~~~g   91 (91)
T 1na3_A           80 KQNLGNAKQKQG   91 (91)
T ss_dssp             HHHHHHHHHHHC
T ss_pred             HHHHHHHHHhcC
Confidence            999999998765

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=98.89  E-value=3.2e-09  Score=89.75  Aligned_cols=108  Identities=13%  Similarity=0.137  Sum_probs=83.2

Q ss_pred             CCCCCHHHHHHHHHHHHHhCC-CCHHHH-HHHHHHHHcCCHHHHHHHHHhhCc------CCcC-------------CCCC
Q 019586            1 MQQNNYIEAEDAYRRALSIAP-DNNKMC-NLGICLMKQGRIGEAKETLRRVKP------AVAD-------------GPRG   59 (338)
Q Consensus         1 mq~g~~eeAi~~y~kALeldP-d~a~a~-nLG~~y~~~G~~dEAi~~~~k~~p------~~~d-------------~lg~   59 (338)
                      +..|+|++|+..++.... +| .....+ ++|.+|..+|++++|+.+|+++..      ..+.             ..|+
T Consensus         3 ~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~   81 (203)
T 3gw4_A            3 FEAHDYALAERQAQALLA-HPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGN   81 (203)
T ss_dssp             ----CHHHHHHHHHHHHT-STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred             cccccHHHHHHHHHHhcC-ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCC
Confidence            357899999996555444 55 444455 999999999999999999999433      1111             2889


Q ss_pred             HHHHHHHHHHHHHh---CCC----CHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCC
Q 019586           60 VDSHLKAYERAQQM---LKD----LESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQP  109 (338)
Q Consensus        60 ~deAi~~yekAL~l---~Pd----~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P  109 (338)
                      +++|+.+|++++++   .++    ...+++++|.++..+|++++|+.+|++++++.+
T Consensus        82 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~  138 (203)
T 3gw4_A           82 WDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQ  138 (203)
T ss_dssp             HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence            99999999999998   443    346789999999999999999999999997744

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=98.88  E-value=4.5e-10  Score=104.26  Aligned_cols=140  Identities=16%  Similarity=0.111  Sum_probs=103.3

Q ss_pred             CCCCHHHHHHHHHHHHHhC------CCCHHHH-HHHHHHHHcCCHHHHHHHHHhhCc---CCcC----------------
Q 019586            2 QQNNYIEAEDAYRRALSIA------PDNNKMC-NLGICLMKQGRIGEAKETLRRVKP---AVAD----------------   55 (338)
Q Consensus         2 q~g~~eeAi~~y~kALeld------Pd~a~a~-nLG~~y~~~G~~dEAi~~~~k~~p---~~~d----------------   55 (338)
                      ..|++++|+.+|++++.+.      |.....+ ++|.+|..+|++++|+.+|+++..   ...+                
T Consensus        59 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~  138 (406)
T 3sf4_A           59 YLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYH  138 (406)
T ss_dssp             HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred             HhcCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHH
Confidence            4689999999999998873      2233344 999999999999999999988332   2111                


Q ss_pred             CCCC--------------------HHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCC
Q 019586           56 GPRG--------------------VDSHLKAYERAQQM------LKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQP  109 (338)
Q Consensus        56 ~lg~--------------------~deAi~~yekAL~l------~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P  109 (338)
                      ..|+                    +++|+.+|++++++      .|....++.++|.++..+|++++|+.+|++++++.|
T Consensus       139 ~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  218 (406)
T 3sf4_A          139 AKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAK  218 (406)
T ss_dssp             HHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHH
T ss_pred             HcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHH
Confidence            1567                    89999999999887      344557889999999999999999999999998877


Q ss_pred             CCcc---------cccchhhhcCccHHHHHhhhhcccCCCh
Q 019586          110 CKDH---------ILPTTNAIKTRDDFADENIDSNVDVNPI  141 (338)
Q Consensus       110 ~~~~---------~l~~l~~~~~~~~~A~e~~~~al~~~P~  141 (338)
                      ....         .++.+....++.+.|...+..++...|.
T Consensus       219 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  259 (406)
T 3sf4_A          219 EFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQ  259 (406)
T ss_dssp             HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             hcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh
Confidence            6543         1222345677777777777776654443

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=98.87  E-value=1.4e-08  Score=100.84  Aligned_cols=107  Identities=10%  Similarity=0.038  Sum_probs=93.0

Q ss_pred             HHHHHHHHHHHHhCCCCHHHH-HHHHHHHH-------cCCHH-------HHHHHHHhhCc-CCcC-------------CC
Q 019586            7 IEAEDAYRRALSIAPDNNKMC-NLGICLMK-------QGRIG-------EAKETLRRVKP-AVAD-------------GP   57 (338)
Q Consensus         7 eeAi~~y~kALeldPd~a~a~-nLG~~y~~-------~G~~d-------EAi~~~~k~~p-~~~d-------------~l   57 (338)
                      .+|+..|++|+..+|+++.+| ++|.++..       +|+++       +|+..|+++.. ..|+             ..
T Consensus       255 ~~a~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~  334 (530)
T 2ooe_A          255 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESR  334 (530)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhc
Confidence            478899999999999999987 99999886       79987       99999999654 3444             27


Q ss_pred             CCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCcc
Q 019586           58 RGVDSHLKAYERAQQMLKDLE-SEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDH  113 (338)
Q Consensus        58 g~~deAi~~yekAL~l~Pd~~-~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~  113 (338)
                      |++++|...|++++++.|.++ .+|.++|.++..+|++++|+..|+++++..|....
T Consensus       335 g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~  391 (530)
T 2ooe_A          335 MKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHH  391 (530)
T ss_dssp             TCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTH
T ss_pred             CCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchH
Confidence            899999999999999999886 68999999999999999999999999998887544

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=98.87  E-value=4.5e-09  Score=87.61  Aligned_cols=95  Identities=18%  Similarity=0.103  Sum_probs=78.8

Q ss_pred             HHHHHHHHcCCHHHHHHHHHhhCcCCcCCCCCHHHHHHHHHHHHHh------------------CCCCHHHHHHHHHHHH
Q 019586           28 NLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQM------------------LKDLESEMMNKGGDRV   89 (338)
Q Consensus        28 nLG~~y~~~G~~dEAi~~~~k~~p~~~d~lg~~deAi~~yekAL~l------------------~Pd~~~a~~nLG~~l~   89 (338)
                      ++|..+...|+|++|+..|.+                     |+++                  +|....+|+++|.+|.
T Consensus        16 ~~G~~~~~~~~~~~A~~~y~~---------------------al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~   74 (162)
T 3rkv_A           16 QKGNELFVQKDYKEAIDAYRD---------------------ALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYL   74 (162)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHH---------------------HHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHH---------------------HHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999666666654                     4444                  6778899999999999


Q ss_pred             HCCCHHHHHHHHHHHHccCCCCcccc---cchhhhcCccHHHHHhhhhcccCCChhh
Q 019586           90 EQSRLFDAFLGSSSIWQPQPCKDHIL---PTTNAIKTRDDFADENIDSNVDVNPIVL  143 (338)
Q Consensus        90 ~lGr~~eAi~~yekALkl~P~~~~~l---~~l~~~~~~~~~A~e~~~~al~~~P~~~  143 (338)
                      .+|++++|+.+|+++++++|.++..+   +.+....++.+.|...+..++.++|...
T Consensus        75 ~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~  131 (162)
T 3rkv_A           75 NIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAA  131 (162)
T ss_dssp             HHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGH
T ss_pred             hcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCH
Confidence            99999999999999999999998733   3346678888888888888888777643

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=98.87  E-value=1.6e-08  Score=96.29  Aligned_cols=108  Identities=3%  Similarity=-0.232  Sum_probs=98.3

Q ss_pred             HHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcC--CHHHHHHHHHh---hCcCCcCC--------------C---CCHHH
Q 019586            6 YIEAEDAYRRALSIAPDNNKMC-NLGICLMKQG--RIGEAKETLRR---VKPAVADG--------------P---RGVDS   62 (338)
Q Consensus         6 ~eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G--~~dEAi~~~~k---~~p~~~d~--------------l---g~~de   62 (338)
                      .++|+.++.++|.++|++..+| .+|.++..+|  ++++++..+.+   .+|.+...              .   +++++
T Consensus        49 s~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~  128 (306)
T 3dra_A           49 SERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDPYR  128 (306)
T ss_dssp             SHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCTHH
T ss_pred             CHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCHHH
Confidence            4799999999999999999988 9999999999  99999999999   45554431              3   78999


Q ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHH--HHHHHHHHHHccCCCCcc
Q 019586           63 HLKAYERAQQMLKDLESEMMNKGGDRVEQSRLF--DAFLGSSSIWQPQPCKDH  113 (338)
Q Consensus        63 Ai~~yekAL~l~Pd~~~a~~nLG~~l~~lGr~~--eAi~~yekALkl~P~~~~  113 (338)
                      ++.+++++++++|.+..+|+.++.++...|+++  +++.++.++++.+|.+..
T Consensus       129 EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~s  181 (306)
T 3dra_A          129 EFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNNS  181 (306)
T ss_dssp             HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCHH
T ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCCHH
Confidence            999999999999999999999999999999999  999999999999999876

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=98.86  E-value=8.4e-09  Score=90.91  Aligned_cols=98  Identities=11%  Similarity=0.049  Sum_probs=48.3

Q ss_pred             HHHHHHHHHHHhCCCCHHHH-HHHHHHHHcCCHHHHHHHHHh-hCcCCcCC---------CC----CHHHHHHHHHHHHH
Q 019586            8 EAEDAYRRALSIAPDNNKMC-NLGICLMKQGRIGEAKETLRR-VKPAVADG---------PR----GVDSHLKAYERAQQ   72 (338)
Q Consensus         8 eAi~~y~kALeldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k-~~p~~~d~---------lg----~~deAi~~yekAL~   72 (338)
                      +|+.+|+++.+.  .++.++ +||.+|...+++++|+.+|++ +...++.+         .+    ++++|+.+|++|++
T Consensus         4 eA~~~~~~aa~~--g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~A~~   81 (212)
T 3rjv_A            4 EPGSQYQQQAEA--GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQGDGDALALLAQLKIRNPQQADYPQARQLAEKAVE   81 (212)
T ss_dssp             CTTHHHHHHHHT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCHHHHHHHHHHTTSSTTSCCHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHH
Confidence            345555555543  344433 555555555555555555555 22222210         12    45555555555533


Q ss_pred             hCCCCHHHHHHHHHHHHH----CCCHHHHHHHHHHHHccCC
Q 019586           73 MLKDLESEMMNKGGDRVE----QSRLFDAFLGSSSIWQPQP  109 (338)
Q Consensus        73 l~Pd~~~a~~nLG~~l~~----lGr~~eAi~~yekALkl~P  109 (338)
                        +.++.++++||.+|..    .+++++|+.+|+++++..|
T Consensus        82 --~g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~  120 (212)
T 3rjv_A           82 --AGSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSE  120 (212)
T ss_dssp             --TTCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTT
T ss_pred             --CCCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCC
Confidence              3455555555555554    5555555555555555554

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=98.84  E-value=1.5e-08  Score=77.59  Aligned_cols=77  Identities=10%  Similarity=0.019  Sum_probs=65.8

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHh---hCcCCcC----------CCCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHH
Q 019586           27 CNLGICLMKQGRIGEAKETLRR---VKPAVAD----------GPRGVDSHLKAYERAQQMLKDL------ESEMMNKGGD   87 (338)
Q Consensus        27 ~nLG~~y~~~G~~dEAi~~~~k---~~p~~~d----------~lg~~deAi~~yekAL~l~Pd~------~~a~~nLG~~   87 (338)
                      +++|.++...|+|++|+..|++   +.|.++.          .+|++++|+.+|+++++++|++      ..+++++|.+
T Consensus         8 ~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~   87 (111)
T 2l6j_A            8 KEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQYRLELA   87 (111)
T ss_dssp             HHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHH
Confidence            3999999999999999999999   4455443          2889999999999999999998      8999999999


Q ss_pred             HHHCCCHHHHHHHHHH
Q 019586           88 RVEQSRLFDAFLGSSS  103 (338)
Q Consensus        88 l~~lGr~~eAi~~yek  103 (338)
                      +..+|++++|+..|++
T Consensus        88 ~~~~~~~~~a~~~~~~  103 (111)
T 2l6j_A           88 QGAVGSVQIPVVEVDE  103 (111)
T ss_dssp             HHHHHCCCCCSSSSSS
T ss_pred             HHHHHhHhhhHhHHHH
Confidence            9999988877766554

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=98.84  E-value=2.1e-08  Score=81.76  Aligned_cols=86  Identities=17%  Similarity=0.134  Sum_probs=74.3

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcCCHHHHHHHHHhhCcCCcCCCCCHHHHHHHHHHHHHhCCCCHHH
Q 019586            2 QQNNYIEAEDAYRRALSIAPDNNKMC-NLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDLESE   80 (338)
Q Consensus         2 q~g~~eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k~~p~~~d~lg~~deAi~~yekAL~l~Pd~~~a   80 (338)
                      ..|++++|+.+|+++++++|++...+ ++|.+|..+|++                     ++|+.+|++++++.|++..+
T Consensus        59 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~---------------------~~A~~~~~~a~~~~p~~~~~  117 (166)
T 1a17_A           59 RTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKF---------------------RAALRDYETVVKVKPHDKDA  117 (166)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH---------------------HHHHHHHHHHHHHSTTCHHH
T ss_pred             HcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhccH---------------------HHHHHHHHHHHHhCCCCHHH
Confidence            46899999999999999999999977 999999999999                     55666667799999999999


Q ss_pred             HHHHH--HHHHHCCCHHHHHHHHHHHHccC
Q 019586           81 MMNKG--GDRVEQSRLFDAFLGSSSIWQPQ  108 (338)
Q Consensus        81 ~~nLG--~~l~~lGr~~eAi~~yekALkl~  108 (338)
                      +..++  ..+...|++++|+.++.++..+.
T Consensus       118 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~  147 (166)
T 1a17_A          118 KMKYQECNKIVKQKAFERAIAGDEHKRSVV  147 (166)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcccchHHHh
Confidence            85554  45889999999999999876654

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=98.83  E-value=4.9e-09  Score=99.21  Aligned_cols=111  Identities=8%  Similarity=-0.006  Sum_probs=94.0

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCC---H----HHH-HHHHHHHHcCCHHHHHHHHHhhCcC---CcC---------------
Q 019586            2 QQNNYIEAEDAYRRALSIAPDN---N----KMC-NLGICLMKQGRIGEAKETLRRVKPA---VAD---------------   55 (338)
Q Consensus         2 q~g~~eeAi~~y~kALeldPd~---a----~a~-nLG~~y~~~G~~dEAi~~~~k~~p~---~~d---------------   55 (338)
                      ..|++++|+.+|++|+++.+..   .    ..+ ++|.+|..+|++++|+.+|+++...   ..+               
T Consensus       153 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y  232 (378)
T 3q15_A          153 HMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSY  232 (378)
T ss_dssp             HTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence            4689999999999999986532   2    133 9999999999999999999994321   111               


Q ss_pred             -CCCCHHHHHHHHHHHHH-----hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCc
Q 019586           56 -GPRGVDSHLKAYERAQQ-----MLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKD  112 (338)
Q Consensus        56 -~lg~~deAi~~yekAL~-----l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~  112 (338)
                       .+|++++|+.+|++|++     .+|....+++++|.++..+|++++|+.+|++++++.+...
T Consensus       233 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  295 (378)
T 3q15_A          233 DRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARS  295 (378)
T ss_dssp             HHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTC
T ss_pred             HHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcC
Confidence             27899999999999999     7788899999999999999999999999999999977643

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=98.82  E-value=8.4e-09  Score=80.80  Aligned_cols=99  Identities=15%  Similarity=0.063  Sum_probs=76.6

Q ss_pred             CCCHHHH-HHHHHHHHcCCHHHHHHHHHhhCcCCcCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHH
Q 019586           21 PDNNKMC-NLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFL   99 (338)
Q Consensus        21 Pd~a~a~-nLG~~y~~~G~~dEAi~~~~k~~p~~~d~lg~~deAi~~yekAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~   99 (338)
                      |.....+ ++|.++...|++                     ++|+.+|++++++.|++..+++++|.++..+|++++|+.
T Consensus        13 ~~~~~~~~~~~~~~~~~~~~---------------------~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~   71 (133)
T 2lni_A           13 PDLALMVKNKGNECFQKGDY---------------------PQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALK   71 (133)
T ss_dssp             SCHHHHHHHHHHHHHHTTCS---------------------HHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHH
T ss_pred             cccHHHHHHHHHHHHHcCCH---------------------HHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHH
Confidence            3444555 999999999999                     556666667999999999999999999999999999999


Q ss_pred             HHHHHHccCCCCcccc---cchhhhcCccHHHHHhhhhcccCCC
Q 019586          100 GSSSIWQPQPCKDHIL---PTTNAIKTRDDFADENIDSNVDVNP  140 (338)
Q Consensus       100 ~yekALkl~P~~~~~l---~~l~~~~~~~~~A~e~~~~al~~~P  140 (338)
                      +|+++++++|.+...+   +.+....++.+.|...+...+..+|
T Consensus        72 ~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p  115 (133)
T 2lni_A           72 DCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDS  115 (133)
T ss_dssp             HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCG
T ss_pred             HHHHHHHhCCCchHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCC
Confidence            9999999999887632   2234455666666666655554444

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=98.81  E-value=1.5e-09  Score=96.86  Aligned_cols=138  Identities=17%  Similarity=0.122  Sum_probs=100.8

Q ss_pred             CCCCHHHHHHHHHHHHHhC------CCCHHHH-HHHHHHHHcCCHHHHHHHHHhhC---cCCcC----------------
Q 019586            2 QQNNYIEAEDAYRRALSIA------PDNNKMC-NLGICLMKQGRIGEAKETLRRVK---PAVAD----------------   55 (338)
Q Consensus         2 q~g~~eeAi~~y~kALeld------Pd~a~a~-nLG~~y~~~G~~dEAi~~~~k~~---p~~~d----------------   55 (338)
                      ..|++++|+.+|++++.+.      |.....+ ++|.+|..+|++++|+.+|+++.   +...+                
T Consensus        55 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~  134 (338)
T 3ro2_A           55 YLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYH  134 (338)
T ss_dssp             HTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHH
Confidence            4689999999999998872      3333344 99999999999999999998832   22221                


Q ss_pred             CCCC--------------------HHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCC
Q 019586           56 GPRG--------------------VDSHLKAYERAQQM------LKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQP  109 (338)
Q Consensus        56 ~lg~--------------------~deAi~~yekAL~l------~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P  109 (338)
                      ..|+                    +++|+..|++++.+      .+....++.++|.++..+|++++|+.+|++++++.+
T Consensus       135 ~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~  214 (338)
T 3ro2_A          135 AKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAK  214 (338)
T ss_dssp             HHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred             HcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence            1557                    89999999999887      344456889999999999999999999999998876


Q ss_pred             CCcc---------cccchhhhcCccHHHHHhhhhcccCC
Q 019586          110 CKDH---------ILPTTNAIKTRDDFADENIDSNVDVN  139 (338)
Q Consensus       110 ~~~~---------~l~~l~~~~~~~~~A~e~~~~al~~~  139 (338)
                      ....         .++.+....++.+.+...+..++...
T Consensus       215 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~  253 (338)
T 3ro2_A          215 EFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLA  253 (338)
T ss_dssp             HHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred             hcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence            5332         11222445666666766666655433

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=98.80  E-value=3.8e-09  Score=88.77  Aligned_cols=111  Identities=13%  Similarity=0.027  Sum_probs=87.3

Q ss_pred             HHHcCCHHHHHHHHHhh---CcCCcC----------CCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH-HHHCCCH--HH
Q 019586           33 LMKQGRIGEAKETLRRV---KPAVAD----------GPRGVDSHLKAYERAQQMLKDLESEMMNKGGD-RVEQSRL--FD   96 (338)
Q Consensus        33 y~~~G~~dEAi~~~~k~---~p~~~d----------~lg~~deAi~~yekAL~l~Pd~~~a~~nLG~~-l~~lGr~--~e   96 (338)
                      +...|++++|+..|+++   .|.++.          ..|++++|+.+|+++++++|+++.+++++|.+ +...|++  ++
T Consensus        20 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~   99 (177)
T 2e2e_A           20 FASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQ   99 (177)
T ss_dssp             CC-----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHH
T ss_pred             hhhccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHH
Confidence            45678899999999883   444443          27899999999999999999999999999999 8899998  99


Q ss_pred             HHHHHHHHHccCCCCccc---ccchhhhcCccHHHHHhhhhcccCCChhh
Q 019586           97 AFLGSSSIWQPQPCKDHI---LPTTNAIKTRDDFADENIDSNVDVNPIVL  143 (338)
Q Consensus        97 Ai~~yekALkl~P~~~~~---l~~l~~~~~~~~~A~e~~~~al~~~P~~~  143 (338)
                      |+.+|+++++++|.+...   ++.+....++.+.|...+..++..+|...
T Consensus       100 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~  149 (177)
T 2e2e_A          100 TRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRI  149 (177)
T ss_dssp             HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTS
T ss_pred             HHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCc
Confidence            999999999999988763   33345677888888888888888888753

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=98.80  E-value=1.9e-08  Score=85.21  Aligned_cols=104  Identities=6%  Similarity=-0.140  Sum_probs=85.0

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCCHHHH-HHHHHH-HHcCCHHHHHHHHHh---hCcCCcC----------CCCCHHHHHHH
Q 019586            2 QQNNYIEAEDAYRRALSIAPDNNKMC-NLGICL-MKQGRIGEAKETLRR---VKPAVAD----------GPRGVDSHLKA   66 (338)
Q Consensus         2 q~g~~eeAi~~y~kALeldPd~a~a~-nLG~~y-~~~G~~dEAi~~~~k---~~p~~~d----------~lg~~deAi~~   66 (338)
                      ..|++++|+.+|++++.++| ++.++ .++.+. ...++..+|+..|++   ..|.++.          ..|++++|+..
T Consensus        52 ~~g~~~~A~~~~~~a~~~~p-~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~  130 (176)
T 2r5s_A           52 ETKQFELAQELLATIPLEYQ-DNSYKSLIAKLELHQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALEL  130 (176)
T ss_dssp             HTTCHHHHHHHHTTCCGGGC-CHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HCCCHHHHHHHHHHhhhccC-ChHHHHHHHHHHHHhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHH
Confidence            47899999999999999999 77755 444342 333444568889988   4555554          38999999999


Q ss_pred             HHHHHHhCCCC--HHHHHHHHHHHHHCCCHHHHHHHHHHHHc
Q 019586           67 YERAQQMLKDL--ESEMMNKGGDRVEQSRLFDAFLGSSSIWQ  106 (338)
Q Consensus        67 yekAL~l~Pd~--~~a~~nLG~~l~~lGr~~eAi~~yekALk  106 (338)
                      |+++++++|++  +.++.++|.++..+|++++|+.+|++++.
T Consensus       131 ~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~al~  172 (176)
T 2r5s_A          131 LWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYRRQLY  172 (176)
T ss_dssp             HHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred             HHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHHHHHH
Confidence            99999999986  56999999999999999999999999874

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=98.80  E-value=3.8e-09  Score=89.31  Aligned_cols=109  Identities=11%  Similarity=0.088  Sum_probs=87.1

Q ss_pred             CCCCHHHHHHHHHHHHHhC------CCCHHHH-HHHHHHHHcCCHHHHHHHHHhhC------cCCcC-------------
Q 019586            2 QQNNYIEAEDAYRRALSIA------PDNNKMC-NLGICLMKQGRIGEAKETLRRVK------PAVAD-------------   55 (338)
Q Consensus         2 q~g~~eeAi~~y~kALeld------Pd~a~a~-nLG~~y~~~G~~dEAi~~~~k~~------p~~~d-------------   55 (338)
                      ..|++++|+.+|++++.+.      +.....+ ++|.+|..+|++++|+.+|+++.      ++.+.             
T Consensus        38 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~  117 (203)
T 3gw4_A           38 FMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVA  117 (203)
T ss_dssp             HTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHH
T ss_pred             HhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHH
Confidence            4689999999999999953      2223334 99999999999999999999932      22321             


Q ss_pred             -CCCCHHHHHHHHHHHHHhCCC--C----HHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCC
Q 019586           56 -GPRGVDSHLKAYERAQQMLKD--L----ESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPC  110 (338)
Q Consensus        56 -~lg~~deAi~~yekAL~l~Pd--~----~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~  110 (338)
                       ..|++++|+.+|++++++.+.  .    ..++.++|.++..+|++++|+.+|++++++...
T Consensus       118 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  179 (203)
T 3gw4_A          118 LHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARDIFAE  179 (203)
T ss_dssp             HHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence             278999999999999987432  2    245689999999999999999999999987544

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=98.79  E-value=3.3e-08  Score=75.31  Aligned_cols=94  Identities=13%  Similarity=0.098  Sum_probs=77.5

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHhhCcCCcCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHc
Q 019586           27 CNLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQ  106 (338)
Q Consensus        27 ~nLG~~y~~~G~~dEAi~~~~k~~p~~~d~lg~~deAi~~yekAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALk  106 (338)
                      +.+|.++...|++                     ++|+..|++++.+.|+++.+++++|.++..+|++++|+.+|+++++
T Consensus         8 ~~~~~~~~~~~~~---------------------~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~   66 (118)
T 1elw_A            8 KEKGNKALSVGNI---------------------DDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVD   66 (118)
T ss_dssp             HHHHHHHHHTTCH---------------------HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcccH---------------------HHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHH
Confidence            3889999999998                     5566666779999999999999999999999999999999999999


Q ss_pred             cCCCCcccc---cchhhhcCccHHHHHhhhhcccCCCh
Q 019586          107 PQPCKDHIL---PTTNAIKTRDDFADENIDSNVDVNPI  141 (338)
Q Consensus       107 l~P~~~~~l---~~l~~~~~~~~~A~e~~~~al~~~P~  141 (338)
                      ++|.+...+   +.+....++.+.+...+...+..+|.
T Consensus        67 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~  104 (118)
T 1elw_A           67 LKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEAN  104 (118)
T ss_dssp             HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT
T ss_pred             hCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC
Confidence            999887632   33355667777777777777766665

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=98.79  E-value=6.7e-09  Score=98.32  Aligned_cols=111  Identities=11%  Similarity=-0.011  Sum_probs=96.3

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHcCCHHHHHHHHHhhCcCC-c---C-----------CCCCHHHHHHH
Q 019586            2 QQNNYIEAEDAYRRALSIAPDNNKMCNLGICLMKQGRIGEAKETLRRVKPAV-A---D-----------GPRGVDSHLKA   66 (338)
Q Consensus         2 q~g~~eeAi~~y~kALeldPd~a~a~nLG~~y~~~G~~dEAi~~~~k~~p~~-~---d-----------~lg~~deAi~~   66 (338)
                      ..|+|++|.+.|+.++..+|++...|.+|.++...++|++|+.+|+++.... +   .           .+|++++|+.+
T Consensus       114 ~~g~y~eA~~~l~~~~~~~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~~~LG~al~~LG~~~eAl~~  193 (282)
T 4f3v_A          114 AQGNYADAMEALEAAPVAGSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAGVAHGVAAANLALFTEAERR  193 (282)
T ss_dssp             HHTCHHHHHHHHTSSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHHHHHHHHHHHHCCCHHHHHHH
Confidence            3589999999999999999988756699999999999999999999843321 1   1           38999999999


Q ss_pred             HHHHHHhC--CC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCcc
Q 019586           67 YERAQQML--KD-LESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDH  113 (338)
Q Consensus        67 yekAL~l~--Pd-~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~  113 (338)
                      |++++.-.  |. .+++++++|.++..+|+.++|..+|++++..+|. +.
T Consensus       194 l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~  242 (282)
T 4f3v_A          194 LTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PK  242 (282)
T ss_dssp             HHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HH
T ss_pred             HHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HH
Confidence            99998654  55 6689999999999999999999999999999998 65

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=98.78  E-value=1.1e-08  Score=90.17  Aligned_cols=107  Identities=12%  Similarity=0.019  Sum_probs=92.4

Q ss_pred             CCCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcC----CHHHHHHHHHh-hCcCCcC--------------CCCCHHH
Q 019586            3 QNNYIEAEDAYRRALSIAPDNNKMC-NLGICLMKQG----RIGEAKETLRR-VKPAVAD--------------GPRGVDS   62 (338)
Q Consensus         3 ~g~~eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G----~~dEAi~~~~k-~~p~~~d--------------~lg~~de   62 (338)
                      .+++++|+.+|++|++.  .++.++ +||.+|.. +    ++++|+.+|++ +.+.++.              ..+++++
T Consensus        31 ~~~~~~A~~~~~~a~~~--g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~g~~~a~~~Lg~~y~~g~g~~~d~~~  107 (212)
T 3rjv_A           31 SGDYQKAEYWAQKAAAQ--GDGDALALLAQLKIR-NPQQADYPQARQLAEKAVEAGSKSGEIVLARVLVNRQAGATDVAH  107 (212)
T ss_dssp             HTCHHHHHHHHHHHHHT--TCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTCGGGSSCCHHH
T ss_pred             CCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCccCHHH
Confidence            47899999999999876  577766 99999998 7    99999999999 4444443              1679999


Q ss_pred             HHHHHHHHHHhCC--CCHHHHHHHHHHHHH----CCCHHHHHHHHHHHHccCCCCcc
Q 019586           63 HLKAYERAQQMLK--DLESEMMNKGGDRVE----QSRLFDAFLGSSSIWQPQPCKDH  113 (338)
Q Consensus        63 Ai~~yekAL~l~P--d~~~a~~nLG~~l~~----lGr~~eAi~~yekALkl~P~~~~  113 (338)
                      |+.+|++|++..+  +++.++++||.+|..    .+++++|+.+|++++++ |.++.
T Consensus       108 A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~~~  163 (212)
T 3rjv_A          108 AITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL-SRTGY  163 (212)
T ss_dssp             HHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT-SCTTH
T ss_pred             HHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc-CCCHH
Confidence            9999999999988  459999999999999    99999999999999988 65554

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=98.77  E-value=2.7e-08  Score=73.61  Aligned_cols=69  Identities=20%  Similarity=0.233  Sum_probs=61.5

Q ss_pred             HHHH-HHHHHHHHcCCHHHHHHHHHhhCcCCcCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Q 019586           24 NKMC-NLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSS  102 (338)
Q Consensus        24 a~a~-nLG~~y~~~G~~dEAi~~~~k~~p~~~d~lg~~deAi~~yekAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~ye  102 (338)
                      ...+ ++|.++...|++                     ++|+.+|++++++.|+.+.+|+++|.++..+|++++|+.+|+
T Consensus         9 ~~~~~~la~~~~~~~~~---------------------~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~   67 (91)
T 1na3_A            9 AEAWYNLGNAYYKQGDY---------------------DEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQ   67 (91)
T ss_dssp             HHHHHHHHHHHHHTTCH---------------------HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHccCH---------------------HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence            4444 999999999999                     556666677999999999999999999999999999999999


Q ss_pred             HHHccCCCCcc
Q 019586          103 SIWQPQPCKDH  113 (338)
Q Consensus       103 kALkl~P~~~~  113 (338)
                      ++++++|.+..
T Consensus        68 ~a~~~~p~~~~   78 (91)
T 1na3_A           68 KALELDPNNAE   78 (91)
T ss_dssp             HHHHHCTTCHH
T ss_pred             HHHhcCCCCHH
Confidence            99999998866

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=98.77  E-value=1.4e-08  Score=78.70  Aligned_cols=99  Identities=10%  Similarity=0.055  Sum_probs=76.0

Q ss_pred             CCCHHHH-HHHHHHHHcCCHHHHHHHHHhhCcCCcCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHH
Q 019586           21 PDNNKMC-NLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFL   99 (338)
Q Consensus        21 Pd~a~a~-nLG~~y~~~G~~dEAi~~~~k~~p~~~d~lg~~deAi~~yekAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~   99 (338)
                      |.....+ .+|.++...|++                     ++|+..|++++.+.|+.+.+++.+|.++...|++++|+.
T Consensus         9 ~~~~~~~~~~~~~~~~~~~~---------------------~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~   67 (131)
T 2vyi_A            9 SAEAERLKTEGNEQMKVENF---------------------EAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQ   67 (131)
T ss_dssp             HHHHHHHHHHHHHHHHTTCH---------------------HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             hhhhHHHHHHHHHHHHccCH---------------------HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHH
Confidence            3344444 999999999999                     555666667999999999999999999999999999999


Q ss_pred             HHHHHHccCCCCcccc---cchhhhcCccHHHHHhhhhcccCCC
Q 019586          100 GSSSIWQPQPCKDHIL---PTTNAIKTRDDFADENIDSNVDVNP  140 (338)
Q Consensus       100 ~yekALkl~P~~~~~l---~~l~~~~~~~~~A~e~~~~al~~~P  140 (338)
                      +|+++++++|.+...+   +.+....++.+.|...+..++..+|
T Consensus        68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p  111 (131)
T 2vyi_A           68 DCERAICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDP  111 (131)
T ss_dssp             HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred             HHHHHHhcCccCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCc
Confidence            9999999999887632   2234455666666666655554444

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.77  E-value=2.3e-08  Score=79.97  Aligned_cols=102  Identities=17%  Similarity=0.062  Sum_probs=81.6

Q ss_pred             hCCCCHHHH-HHHHHHHHcCCHHHHHHHHHhhCcCCcCCCCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHCCCH
Q 019586           19 IAPDNNKMC-NLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDL---ESEMMNKGGDRVEQSRL   94 (338)
Q Consensus        19 ldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k~~p~~~d~lg~~deAi~~yekAL~l~Pd~---~~a~~nLG~~l~~lGr~   94 (338)
                      .+|.....+ .+|.++...|+|                     ++|+.+|++++++.|+.   ..+|+++|.+|..+|++
T Consensus        23 ~~~~~~~~~~~~a~~~~~~~~~---------------------~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~   81 (148)
T 2dba_A           23 PGASSVEQLRKEGNELFKCGDY---------------------GGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDY   81 (148)
T ss_dssp             TTCCCHHHHHHHHHHHHTTTCH---------------------HHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred             cchHHHHHHHHHHHHHHHhCCH---------------------HHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccH
Confidence            456677755 999999999999                     55566666689999987   89999999999999999


Q ss_pred             HHHHHHHHHHHccCCCCcccc---cchhhhcCccHHHHHhhhhcccCCCh
Q 019586           95 FDAFLGSSSIWQPQPCKDHIL---PTTNAIKTRDDFADENIDSNVDVNPI  141 (338)
Q Consensus        95 ~eAi~~yekALkl~P~~~~~l---~~l~~~~~~~~~A~e~~~~al~~~P~  141 (338)
                      ++|+.+|+++++++|.+...+   +.+....++.+.|...+..++..+|.
T Consensus        82 ~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~  131 (148)
T 2dba_A           82 DKAETEASKAIEKDGGDVKALYRRSQALEKLGRLDQAVLDLQRCVSLEPK  131 (148)
T ss_dssp             HHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSS
T ss_pred             HHHHHHHHHHHhhCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Confidence            999999999999999887632   33345667777777777777666665

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=98.76  E-value=5.7e-09  Score=90.97  Aligned_cols=108  Identities=14%  Similarity=0.015  Sum_probs=87.0

Q ss_pred             CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCH----------HHHHHHHHHHHccCCCCcccccch---hhhc-
Q 019586           57 PRGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRL----------FDAFLGSSSIWQPQPCKDHILPTT---NAIK-  122 (338)
Q Consensus        57 lg~~deAi~~yekAL~l~Pd~~~a~~nLG~~l~~lGr~----------~eAi~~yekALkl~P~~~~~l~~l---~~~~-  122 (338)
                      .+++++|+..|+++++++|+++++|+++|.++..+|++          ++|+.+|+++|+++|++...+..+   .... 
T Consensus        15 ~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg   94 (158)
T 1zu2_A           15 ILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFA   94 (158)
T ss_dssp             HHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred             HhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhc
Confidence            44679999999999999999999999999999999886          599999999999999998743333   3222 


Q ss_pred             ----------CccHHHHHhhhhcccCCChhhhhhhhhhhhcchHHHHHHhHhHHHHhhchhh
Q 019586          123 ----------TRDDFADENIDSNVDVNPIVLSKHRSVKKLFPTANAIKTQENFADENINANI  174 (338)
Q Consensus       123 ----------~~~~~A~e~~~~al~~~P~~~~K~~~~~kl~~~~~ai~~~~~~~e~y~nlg~  174 (338)
                                ++.+.|...+..++.++|...          .+.++++..++-.+.++++..
T Consensus        95 ~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~----------~y~~al~~~~ka~el~~~~~~  146 (158)
T 1zu2_A           95 FLTPDETEAKHNFDLATQFFQQAVDEQPDNT----------HYLKSLEMTAKAPQLHAEAYK  146 (158)
T ss_dssp             HHCCCHHHHHHHHHHHHHHHHHHHHHCTTCH----------HHHHHHHHHHTHHHHHHHHHH
T ss_pred             ccCcchhhhhccHHHHHHHHHHHHHhCCCCH----------HHHHHHHHHHhCHhccCcccc
Confidence                      467778888999998888742          456677777777777776655

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=98.76  E-value=5e-08  Score=74.83  Aligned_cols=98  Identities=19%  Similarity=0.196  Sum_probs=71.6

Q ss_pred             hCCCC-HHHH-HHHHHHHHcCCHHHHHHHHHhhCcCCcCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHH
Q 019586           19 IAPDN-NKMC-NLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFD   96 (338)
Q Consensus        19 ldPd~-a~a~-nLG~~y~~~G~~dEAi~~~~k~~p~~~d~lg~~deAi~~yekAL~l~Pd~~~a~~nLG~~l~~lGr~~e   96 (338)
                      ++|.. ...+ .+|.++...|++                     ++|+.+|+++++..|+...+++.+|.++...|++++
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~---------------------~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~   61 (125)
T 1na0_A            3 MDPGNSAEAWYNLGNAYYKQGDY---------------------DEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDE   61 (125)
T ss_dssp             ----CHHHHHHHHHHHHHHTTCH---------------------HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred             CCccccHHHHHHHHHHHHHcCCH---------------------HHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHH
Confidence            35555 4444 999999999999                     555666666899999999999999999999999999


Q ss_pred             HHHHHHHHHccCCCCcccc---cchhhhcCccHHHHHhhhhccc
Q 019586           97 AFLGSSSIWQPQPCKDHIL---PTTNAIKTRDDFADENIDSNVD  137 (338)
Q Consensus        97 Ai~~yekALkl~P~~~~~l---~~l~~~~~~~~~A~e~~~~al~  137 (338)
                      |+.+|++++++.|.+...+   +.+....++.+.+...+...+.
T Consensus        62 A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~  105 (125)
T 1na0_A           62 AIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALE  105 (125)
T ss_dssp             HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence            9999999999999876532   2223344555555555544443

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=98.76  E-value=1.6e-08  Score=95.80  Aligned_cols=178  Identities=10%  Similarity=-0.082  Sum_probs=124.1

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCCHHHH-HH-------HHHHHHcCCHHHHHHHHHhhC---cCC-----c-C---------
Q 019586            2 QQNNYIEAEDAYRRALSIAPDNNKMC-NL-------GICLMKQGRIGEAKETLRRVK---PAV-----A-D---------   55 (338)
Q Consensus         2 q~g~~eeAi~~y~kALeldPd~a~a~-nL-------G~~y~~~G~~dEAi~~~~k~~---p~~-----~-d---------   55 (338)
                      +.+++.+|+.+|.+++.++|+..++| ++       +.++...++..+++..+++..   |..     . .         
T Consensus        18 ~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~~~   97 (282)
T 4f3v_A           18 LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDITYP   97 (282)
T ss_dssp             TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCEEE
T ss_pred             cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCcccccccc
Confidence            45789999999999999999999988 78       788888888888888887722   211     1 0         


Q ss_pred             ----------------CCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCC----cc-c
Q 019586           56 ----------------GPRGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCK----DH-I  114 (338)
Q Consensus        56 ----------------~lg~~deAi~~yekAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~----~~-~  114 (338)
                                      ..|++++|...|+.++...|++. +++.+|.++++.|+|++|+.+|+.+++..+..    .. .
T Consensus        98 v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~~~  176 (282)
T 4f3v_A           98 VTSPLAITMGFAACEAAQGNYADAMEALEAAPVAGSEHL-VAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAGVA  176 (282)
T ss_dssp             CSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHH-HHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHHHHH
T ss_pred             cCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchH-HHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHHHHH
Confidence                            15688888888888887788777 77888888888888888888887776653211    11 4


Q ss_pred             ccchhhhcCccHHHHHhhhhcccCC--Ch-----hhhhhhhhhhhcchHHHHHHhHhHHHHhhchhhhhhHhhhhh
Q 019586          115 LPTTNAIKTRDDFADENIDSNVDVN--PI-----VLSKHRSVKKLFPTANAIKTQENFADENINANIVVNQTVLAQ  183 (338)
Q Consensus       115 l~~l~~~~~~~~~A~e~~~~al~~~--P~-----~~~K~~~~~kl~~~~~ai~~~~~~~e~y~nlg~~~~~~~~~d  183 (338)
                      ++.+....++.+.|...+..++.-.  |.     .+.+...+..+....+|...-.+......+ .-+.  ..+.+
T Consensus       177 LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~--~aL~~  249 (282)
T 4f3v_A          177 HGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVA--AALKD  249 (282)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHH--HHHHC
T ss_pred             HHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHH--HHHhC
Confidence            4444667777777777777665322  32     234555666777777777777777776666 4433  34444

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=98.75  E-value=2.6e-08  Score=99.17  Aligned_cols=91  Identities=9%  Similarity=-0.086  Sum_probs=76.8

Q ss_pred             CCCHHHHHHHHHHHHHh-----CCCCHH---HH-HHHHHHHHcCCHHHHHHHHHhhCcCCcCCCCCHHHHHHHHHHHHHh
Q 019586            3 QNNYIEAEDAYRRALSI-----APDNNK---MC-NLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQM   73 (338)
Q Consensus         3 ~g~~eeAi~~y~kALel-----dPd~a~---a~-nLG~~y~~~G~~dEAi~~~~k~~p~~~d~lg~~deAi~~yekAL~l   73 (338)
                      .|+|++|+..|++++++     .|+++.   .+ |||.+|..+|+|++|+.+|++              |+..+++.+--
T Consensus       311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~--------------aL~i~~~~lG~  376 (433)
T 3qww_A          311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQK--------------IIKPYSKHYPV  376 (433)
T ss_dssp             TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHH--------------HHHHHHHHSCS
T ss_pred             ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHH--------------HHHHHHHHcCC
Confidence            58999999999999996     577777   22 999999999999999999865              67777776432


Q ss_pred             -CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcc
Q 019586           74 -LKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQP  107 (338)
Q Consensus        74 -~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl  107 (338)
                       .|+.+..++|||.+|..+|++++|+..|++|+++
T Consensus       377 ~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~i  411 (433)
T 3qww_A          377 YSLNVASMWLKLGRLYMGLENKAAGEKALKKAIAI  411 (433)
T ss_dssp             SCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             CChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHH
Confidence             2444577999999999999999999999999876

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=98.74  E-value=3.1e-08  Score=78.09  Aligned_cols=95  Identities=12%  Similarity=0.072  Sum_probs=76.1

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHhhCcCCcCCCCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHCCCHHHHHHHHH
Q 019586           26 MCNLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDLE---SEMMNKGGDRVEQSRLFDAFLGSS  102 (338)
Q Consensus        26 a~nLG~~y~~~G~~dEAi~~~~k~~p~~~d~lg~~deAi~~yekAL~l~Pd~~---~a~~nLG~~l~~lGr~~eAi~~ye  102 (338)
                      .+++|.++...|+|                     ++|+..|+++++..|+++   .+++.+|.++..+|++++|+.+|+
T Consensus         5 ~~~~a~~~~~~~~~---------------------~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~   63 (129)
T 2xev_A            5 AYNVAFDALKNGKY---------------------DDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFR   63 (129)
T ss_dssp             HHHHHHHHHHTTCH---------------------HHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCH---------------------HHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHH
Confidence            34788889999888                     556666667999999988   899999999999999999999999


Q ss_pred             HHHccCCCCc---c---cccchhhhcCccHHHHHhhhhcccCCCh
Q 019586          103 SIWQPQPCKD---H---ILPTTNAIKTRDDFADENIDSNVDVNPI  141 (338)
Q Consensus       103 kALkl~P~~~---~---~l~~l~~~~~~~~~A~e~~~~al~~~P~  141 (338)
                      ++++..|++.   .   .++.+....++.+.|...+...+...|.
T Consensus        64 ~~~~~~p~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~  108 (129)
T 2xev_A           64 DLVSRYPTHDKAAGGLLKLGLSQYGEGKNTEAQQTLQQVATQYPG  108 (129)
T ss_dssp             HHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred             HHHHHCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC
Confidence            9999999983   3   2233355677777777777777766665

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=98.74  E-value=2.5e-08  Score=91.92  Aligned_cols=101  Identities=10%  Similarity=-0.055  Sum_probs=85.5

Q ss_pred             CCCHHHH-HHHHHHHHcCCHHHHHHHHHhhCcCCcCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHH
Q 019586           21 PDNNKMC-NLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFL   99 (338)
Q Consensus        21 Pd~a~a~-nLG~~y~~~G~~dEAi~~~~k~~p~~~d~lg~~deAi~~yekAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~   99 (338)
                      |..+..+ ++|.++...|+|                     ++|+..|+++++++|+++.+|+++|.+|..+|++++|+.
T Consensus         1 p~~a~~~~~~g~~~~~~g~~---------------------~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~   59 (281)
T 2c2l_A            1 SPSAQELKEQGNRLFVGRKY---------------------PEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALA   59 (281)
T ss_dssp             CCCHHHHHHHHHHHHHTTCH---------------------HHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             ChhHHHHHHHHHHHHHcCCH---------------------HHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHH
Confidence            4566655 999999999999                     556666677999999999999999999999999999999


Q ss_pred             HHHHHHccCCCCcccc---cchhhhcCccHHHHHhhhhcccCCChh
Q 019586          100 GSSSIWQPQPCKDHIL---PTTNAIKTRDDFADENIDSNVDVNPIV  142 (338)
Q Consensus       100 ~yekALkl~P~~~~~l---~~l~~~~~~~~~A~e~~~~al~~~P~~  142 (338)
                      +|+++++++|.+...+   +.+....++.+.|...+..++..+|..
T Consensus        60 ~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~  105 (281)
T 2c2l_A           60 DCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQ  105 (281)
T ss_dssp             HHHHHTTSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc
Confidence            9999999999988733   334667888888998888888877753

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=98.72  E-value=2.5e-08  Score=75.87  Aligned_cols=79  Identities=19%  Similarity=0.132  Sum_probs=68.9

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHh---hCcCCcC-C----------CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC
Q 019586           27 CNLGICLMKQGRIGEAKETLRR---VKPAVAD-G----------PRGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQS   92 (338)
Q Consensus        27 ~nLG~~y~~~G~~dEAi~~~~k---~~p~~~d-~----------lg~~deAi~~yekAL~l~Pd~~~a~~nLG~~l~~lG   92 (338)
                      +++|.++...|++++|+..|++   ..|.++. .          +|++++|+.+|+++++++|++..++.+        +
T Consensus         4 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~--------~   75 (99)
T 2kc7_A            4 LKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR--------K   75 (99)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH--------H
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--------H
Confidence            4789999999999999999999   4566655 2          789999999999999999999998865        6


Q ss_pred             CHHHHHHHHHHHHccCCCCcc
Q 019586           93 RLFDAFLGSSSIWQPQPCKDH  113 (338)
Q Consensus        93 r~~eAi~~yekALkl~P~~~~  113 (338)
                      .+.+|+.+|++++..+|.+..
T Consensus        76 ~~~~a~~~~~~~~~~~p~~~~   96 (99)
T 2kc7_A           76 MVMDILNFYNKDMYNQLEHHH   96 (99)
T ss_dssp             HHHHHHHHHCCTTHHHHCCSS
T ss_pred             HHHHHHHHHHHHhccCccccc
Confidence            788899999999999888764

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=98.72  E-value=5.5e-08  Score=90.90  Aligned_cols=135  Identities=16%  Similarity=0.043  Sum_probs=103.4

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCCHH-----HH-HHHHHHHHcCCHHHHHHHHHhhC---cCCcC----------------C
Q 019586            2 QQNNYIEAEDAYRRALSIAPDNNK-----MC-NLGICLMKQGRIGEAKETLRRVK---PAVAD----------------G   56 (338)
Q Consensus         2 q~g~~eeAi~~y~kALeldPd~a~-----a~-nLG~~y~~~G~~dEAi~~~~k~~---p~~~d----------------~   56 (338)
                      ..|++++|+.++++++...|....     .+ ++|.+|...|++++|+..++++.   +...+                .
T Consensus        26 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~  105 (373)
T 1hz4_A           26 NDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFA  105 (373)
T ss_dssp             HTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHH
Confidence            468999999999999999876532     22 99999999999999999999932   22211                2


Q ss_pred             CCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCcc--------cccchhh
Q 019586           57 PRGVDSHLKAYERAQQML--------KDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDH--------ILPTTNA  120 (338)
Q Consensus        57 lg~~deAi~~yekAL~l~--------Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~--------~l~~l~~  120 (338)
                      .|++++|+..|++++++.        |....++.++|.++..+|++++|..+|++++.+.+....        .++.+..
T Consensus       106 ~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~  185 (373)
T 1hz4_A          106 QGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSL  185 (373)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHH
Confidence            899999999999999986        334577889999999999999999999999999886432        1112234


Q ss_pred             hcCccHHHHHhhhhcc
Q 019586          121 IKTRDDFADENIDSNV  136 (338)
Q Consensus       121 ~~~~~~~A~e~~~~al  136 (338)
                      ..++.+.|...+..++
T Consensus       186 ~~g~~~~A~~~l~~a~  201 (373)
T 1hz4_A          186 ARGDLDNARSQLNRLE  201 (373)
T ss_dssp             HHTCHHHHHHHHHHHH
T ss_pred             HcCCHHHHHHHHHHHH
Confidence            5555555655555443

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=98.71  E-value=2.5e-08  Score=102.16  Aligned_cols=108  Identities=9%  Similarity=-0.052  Sum_probs=97.8

Q ss_pred             HHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcC--CHHHHHHHHHhhCcCCcC-------------CCC-CHHHHHHHHH
Q 019586            6 YIEAEDAYRRALSIAPDNNKMC-NLGICLMKQG--RIGEAKETLRRVKPAVAD-------------GPR-GVDSHLKAYE   68 (338)
Q Consensus         6 ~eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G--~~dEAi~~~~k~~p~~~d-------------~lg-~~deAi~~ye   68 (338)
                      +++|+.+|.++++.+|++..+| ++++++...|  +|++|++.+.++...++.             .++ .+++++++++
T Consensus        89 ~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~  168 (567)
T 1dce_A           89 VKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTD  168 (567)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHH
Confidence            8999999999999999999988 9999999999  789999999994443333             256 8999999999


Q ss_pred             HHHHhCCCCHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHccCCCCcc
Q 019586           69 RAQQMLKDLESEMMNKGGDRVEQ--------------SRLFDAFLGSSSIWQPQPCKDH  113 (338)
Q Consensus        69 kAL~l~Pd~~~a~~nLG~~l~~l--------------Gr~~eAi~~yekALkl~P~~~~  113 (338)
                      ++|+.+|++..+|+++|.++..+              +++++|++++.+|+.++|++..
T Consensus       169 ~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~P~~~s  227 (567)
T 1dce_A          169 SLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQS  227 (567)
T ss_dssp             TTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSSCSH
T ss_pred             HHHHHCCCCccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhhCCCCcc
Confidence            99999999999999999999885              6689999999999999999876

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=98.70  E-value=1e-08  Score=102.37  Aligned_cols=91  Identities=16%  Similarity=0.097  Sum_probs=77.2

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcCCHHHHHHHHHhhCcCCcCCCCCHHHHHHHHHHHHHhCCCCHHH
Q 019586            2 QQNNYIEAEDAYRRALSIAPDNNKMC-NLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDLESE   80 (338)
Q Consensus         2 q~g~~eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k~~p~~~d~lg~~deAi~~yekAL~l~Pd~~~a   80 (338)
                      ++|+|++|+.+|++|++++|++..++ ++|.+|..+|++                     ++|+.+|++|++++|++..+
T Consensus        52 ~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~---------------------~eA~~~~~~al~~~p~~~~~  110 (477)
T 1wao_1           52 RTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKF---------------------RAALRDYETVVKVKPHDKDA  110 (477)
T ss_dssp             HTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCH---------------------HHHHHHHHHHHHHSTTCTTH
T ss_pred             HhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH---------------------HHHHHHHHHHHHhCCCCHHH
Confidence            47899999999999999999999977 999999999999                     55666667799999999999


Q ss_pred             HHHHHHH--HHHCCCHHHHHHHHH-----------HHHccCCCCcc
Q 019586           81 MMNKGGD--RVEQSRLFDAFLGSS-----------SIWQPQPCKDH  113 (338)
Q Consensus        81 ~~nLG~~--l~~lGr~~eAi~~ye-----------kALkl~P~~~~  113 (338)
                      +.++|.+  +..+|++++|+.+|+           +++.++|....
T Consensus       111 ~~~l~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~al~~~~~~~~  156 (477)
T 1wao_1          111 KMKYQECNKIVKQKAFERAIAGDEHKRSVVDSLDIESMTIEDEYSG  156 (477)
T ss_dssp             HHHHHHHHHHHHHHHHCCC------CCSTTTCCTTSSCCCCTTCCS
T ss_pred             HHHHHHHHHHHHHHHHHHHhccccccchhHhhhhhhhccccccccc
Confidence            9999998  999999999999999           88888887655

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=98.70  E-value=4.7e-08  Score=98.81  Aligned_cols=92  Identities=16%  Similarity=0.067  Sum_probs=77.2

Q ss_pred             CCCCHHHHHHHHHHHHHh-----CCCCHH---HH-HHHHHHHHcCCHHHHHHHHHhhCcCCcCCCCCHHHHHHHHHHHHH
Q 019586            2 QQNNYIEAEDAYRRALSI-----APDNNK---MC-NLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQ   72 (338)
Q Consensus         2 q~g~~eeAi~~y~kALel-----dPd~a~---a~-nLG~~y~~~G~~dEAi~~~~k~~p~~~d~lg~~deAi~~yekAL~   72 (338)
                      .+|+|++|+.+|++++++     .|+++.   .+ |||.+|..+|+|++|+.+|++              |+..+++.+-
T Consensus       321 ~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~--------------aL~i~~~~lG  386 (490)
T 3n71_A          321 SEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARR--------------MVDGYMKLYH  386 (490)
T ss_dssp             TTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHH--------------HHHHHHHHSC
T ss_pred             hCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHH--------------HHHHHHHHcC
Confidence            479999999999999996     467776   22 999999999999999999855              6777777643


Q ss_pred             h-CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcc
Q 019586           73 M-LKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQP  107 (338)
Q Consensus        73 l-~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl  107 (338)
                      - +|+.+..+++||.+|..+|++++|+..|++|+++
T Consensus       387 ~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i  422 (490)
T 3n71_A          387 HNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAI  422 (490)
T ss_dssp             TTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence            2 2444577899999999999999999999999976

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=98.66  E-value=2.1e-09  Score=85.41  Aligned_cols=85  Identities=13%  Similarity=-0.073  Sum_probs=69.8

Q ss_pred             CCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCcccc---cchhhhcCccHHHHH
Q 019586           57 PRGVDSHLKAYERAQQM---LKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDHIL---PTTNAIKTRDDFADE  130 (338)
Q Consensus        57 lg~~deAi~~yekAL~l---~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~~l---~~l~~~~~~~~~A~e  130 (338)
                      +|++++|+.+|++++++   +|+++.+|+++|.+|..+|++++|+.+|+++++++|+++..+   +.+....++.+.|..
T Consensus         3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~   82 (117)
T 3k9i_A            3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVE   82 (117)
T ss_dssp             ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred             CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHH
Confidence            56788999999999999   698999999999999999999999999999999999998733   333567788888888


Q ss_pred             hhhhcccCCCh
Q 019586          131 NIDSNVDVNPI  141 (338)
Q Consensus       131 ~~~~al~~~P~  141 (338)
                      .+..++..+|.
T Consensus        83 ~~~~al~~~p~   93 (117)
T 3k9i_A           83 LLLKIIAETSD   93 (117)
T ss_dssp             HHHHHHHHHCC
T ss_pred             HHHHHHHhCCC
Confidence            88877765554

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=98.65  E-value=1.5e-07  Score=87.96  Aligned_cols=138  Identities=9%  Similarity=-0.038  Sum_probs=105.5

Q ss_pred             CCCHHHHHHHHHHHHHhCCCCHH-------HHHHHHHHHHcCCHHHHHHHHHhhCc------C--CcC------------
Q 019586            3 QNNYIEAEDAYRRALSIAPDNNK-------MCNLGICLMKQGRIGEAKETLRRVKP------A--VAD------------   55 (338)
Q Consensus         3 ~g~~eeAi~~y~kALeldPd~a~-------a~nLG~~y~~~G~~dEAi~~~~k~~p------~--~~d------------   55 (338)
                      .|++++|+.+|++++.+.+....       .+++|.++..+|++++|+.+|+++..      .  .+.            
T Consensus        66 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~  145 (373)
T 1hz4_A           66 KGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLL  145 (373)
T ss_dssp             HTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHH
T ss_pred             cCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHH
Confidence            58999999999999998654322       22999999999999999999998321      1  111            


Q ss_pred             -CCCCHHHHHHHHHHHHHhCCC-----CHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCcc---ccc-------chh
Q 019586           56 -GPRGVDSHLKAYERAQQMLKD-----LESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDH---ILP-------TTN  119 (338)
Q Consensus        56 -~lg~~deAi~~yekAL~l~Pd-----~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~---~l~-------~l~  119 (338)
                       ..|++++|+.+|++++++.+.     ...++.++|.++...|++++|..++++++.+.+....   ...       .+.
T Consensus       146 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~  225 (373)
T 1hz4_A          146 WAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYW  225 (373)
T ss_dssp             HHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHH
T ss_pred             HHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHH
Confidence             279999999999999999875     3467899999999999999999999999987443211   111       113


Q ss_pred             hhcCccHHHHHhhhhcccCCC
Q 019586          120 AIKTRDDFADENIDSNVDVNP  140 (338)
Q Consensus       120 ~~~~~~~~A~e~~~~al~~~P  140 (338)
                      ...++.+.+...+...+...|
T Consensus       226 ~~~g~~~~A~~~~~~a~~~~~  246 (373)
T 1hz4_A          226 QMTGDKAAAANWLRHTAKPEF  246 (373)
T ss_dssp             HHTTCHHHHHHHHHHSCCCCC
T ss_pred             HHCCCHHHHHHHHHhCCCCCC
Confidence            366777777777777776554

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=98.63  E-value=1.7e-08  Score=95.84  Aligned_cols=91  Identities=16%  Similarity=0.088  Sum_probs=44.5

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcCCHHHHHHHHHhhCcCCcCCCCCHHHHHHHHHHHHHhCCCCHHH
Q 019586            2 QQNNYIEAEDAYRRALSIAPDNNKMC-NLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDLESE   80 (338)
Q Consensus         2 q~g~~eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k~~p~~~d~lg~~deAi~~yekAL~l~Pd~~~a   80 (338)
                      +.|+|++|+.+|+++++++|++..++ ++|.+|..+|+|                     ++|+.+|+++++++|++..+
T Consensus       242 ~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~---------------------~~A~~~l~~al~l~p~~~~a  300 (338)
T 2if4_A          242 KLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQM---------------------DSARDDFRKAQKYAPDDKAI  300 (338)
T ss_dssp             TTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCH---------------------HHHHHHHHHTTC--------
T ss_pred             HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH---------------------HHHHHHHHHHHHHCCCCHHH
Confidence            57899999999999999999999977 999999999999                     55666666799999999999


Q ss_pred             HHHHHHH-HHHCCCHHHHHHHHHHHHccCCCCcc
Q 019586           81 MMNKGGD-RVEQSRLFDAFLGSSSIWQPQPCKDH  113 (338)
Q Consensus        81 ~~nLG~~-l~~lGr~~eAi~~yekALkl~P~~~~  113 (338)
                      +.+|+.+ ....+..+++...|.+++...|.++.
T Consensus       301 ~~~L~~l~~~~~~~~~~a~~~~~~~l~~~p~~~~  334 (338)
T 2if4_A          301 RRELRALAEQEKALYQKQKEMYKGIFKGKDEGGA  334 (338)
T ss_dssp             ----------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCC
Confidence            9999998 55667788889999999999998764

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=98.63  E-value=2e-07  Score=89.96  Aligned_cols=143  Identities=8%  Similarity=-0.109  Sum_probs=109.9

Q ss_pred             CCCH-HHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcCC----------HHHHHHHHHhh---CcCCcCC----------C
Q 019586            3 QNNY-IEAEDAYRRALSIAPDNNKMC-NLGICLMKQGR----------IGEAKETLRRV---KPAVADG----------P   57 (338)
Q Consensus         3 ~g~~-eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G~----------~dEAi~~~~k~---~p~~~d~----------l   57 (338)
                      .|.+ ++|+.++.++|.++|++..+| ..+.++...++          +++++..+..+   .|.+...          +
T Consensus        42 ~~e~s~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l  121 (331)
T 3dss_A           42 AGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRL  121 (331)
T ss_dssp             TTCCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHC
T ss_pred             cCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhcc
Confidence            3444 589999999999999999977 88888887776          68899999884   4444431          4


Q ss_pred             C--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC-HHHHHHHHHHHHccCCCCcccccch---hhhc---------
Q 019586           58 R--GVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQSR-LFDAFLGSSSIWQPQPCKDHILPTT---NAIK---------  122 (338)
Q Consensus        58 g--~~deAi~~yekAL~l~Pd~~~a~~nLG~~l~~lGr-~~eAi~~yekALkl~P~~~~~l~~l---~~~~---------  122 (338)
                      +  .+++++.++.++++++|.+..+|++.+.++...|+ +++++.++.++++.+|.+.......   ....         
T Consensus       122 ~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~SAW~~R~~ll~~l~~~~~~~~~  201 (331)
T 3dss_A          122 PEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQ  201 (331)
T ss_dssp             SSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHHSCCC-----
T ss_pred             CcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhhhccccccc
Confidence            5  58999999999999999999999999999999999 5899999999999999887622111   1111         


Q ss_pred             -----CccHHHHHhhhhcccCCChhhhh
Q 019586          123 -----TRDDFADENIDSNVDVNPIVLSK  145 (338)
Q Consensus       123 -----~~~~~A~e~~~~al~~~P~~~~K  145 (338)
                           +..+.+.+.+..+++.+|...+-
T Consensus       202 ~~~~~~~~~eEle~~~~ai~~~P~d~Sa  229 (331)
T 3dss_A          202 GRLPENVLLKELELVQNAFFTDPNDQSA  229 (331)
T ss_dssp             -CCCHHHHHHHHHHHHHHHHHSTTCHHH
T ss_pred             cccchHHHHHHHHHHHHHHHhCCCCHHH
Confidence                 22344667777788888876653

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=98.61  E-value=4.8e-08  Score=75.80  Aligned_cols=92  Identities=12%  Similarity=0.050  Sum_probs=70.7

Q ss_pred             HHHHHHHHcCCHHHHHHHHHhhCcCCcCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcc
Q 019586           28 NLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQP  107 (338)
Q Consensus        28 nLG~~y~~~G~~dEAi~~~~k~~p~~~d~lg~~deAi~~yekAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl  107 (338)
                      .+|.++...|++                     ++|+.+|++++++.|+.+.+++++|.++..+|++++|+.+|++++++
T Consensus         9 ~l~~~~~~~~~~---------------------~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~   67 (131)
T 1elr_A            9 ELGNDAYKKKDF---------------------DTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEV   67 (131)
T ss_dssp             HHHHHHHHTTCH---------------------HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCH---------------------HHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhh
Confidence            899999999999                     55666667799999999999999999999999999999999999999


Q ss_pred             CCCC-------ccc---ccchhhhcCccHHHHHhhhhcccCCC
Q 019586          108 QPCK-------DHI---LPTTNAIKTRDDFADENIDSNVDVNP  140 (338)
Q Consensus       108 ~P~~-------~~~---l~~l~~~~~~~~~A~e~~~~al~~~P  140 (338)
                      .|.+       ...   ++.+....+..+.|.+.+...+...|
T Consensus        68 ~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~  110 (131)
T 1elr_A           68 GRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHR  110 (131)
T ss_dssp             HHHSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred             ccccchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC
Confidence            8876       221   12223455555566666655554444

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=98.59  E-value=3.3e-07  Score=89.93  Aligned_cols=101  Identities=14%  Similarity=0.115  Sum_probs=65.4

Q ss_pred             CCCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHH----cCCHHHHHHHHHhh-CcCCcCC---------------CCCHH
Q 019586            3 QNNYIEAEDAYRRALSIAPDNNKMC-NLGICLMK----QGRIGEAKETLRRV-KPAVADG---------------PRGVD   61 (338)
Q Consensus         3 ~g~~eeAi~~y~kALeldPd~a~a~-nLG~~y~~----~G~~dEAi~~~~k~-~p~~~d~---------------lg~~d   61 (338)
                      .+++++|+.+|+++++.  .+..++ ++|.+|..    .+++++|+.+|+++ ...+++.               .++++
T Consensus       236 ~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~~~~g~~~~~~  313 (490)
T 2xm6_A          236 TQDYTQSRVLFSQSAEQ--GNSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQGNSDGQYYLAHLYDKGAEGVAKNRE  313 (490)
T ss_dssp             CCCHHHHHHHHHHHHTT--TCHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHCBTTBCCCHH
T ss_pred             CCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCCcCCHH
Confidence            46677777777777665  344444 77777777    77777777777773 2222221               25777


Q ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcc
Q 019586           62 SHLKAYERAQQMLKDLESEMMNKGGDRVEQS---RLFDAFLGSSSIWQP  107 (338)
Q Consensus        62 eAi~~yekAL~l~Pd~~~a~~nLG~~l~~lG---r~~eAi~~yekALkl  107 (338)
                      +|+.+|+++++.  .++.++++||.+|...|   ++++|+.+|+++++.
T Consensus       314 ~A~~~~~~a~~~--~~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~  360 (490)
T 2xm6_A          314 QAISWYTKSAEQ--GDATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK  360 (490)
T ss_dssp             HHHHHHHHHHHT--TCHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHhc--CCHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC
Confidence            777777777664  45667777777776655   667777777777665

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=98.59  E-value=2.3e-07  Score=88.29  Aligned_cols=109  Identities=6%  Similarity=-0.126  Sum_probs=98.2

Q ss_pred             CHHHHHHHHHHHHHhCCCCHHHH-HHHHHH----HHc---CCHHHHHHHHHhhCcCCcC-------------CCCCHH--
Q 019586            5 NYIEAEDAYRRALSIAPDNNKMC-NLGICL----MKQ---GRIGEAKETLRRVKPAVAD-------------GPRGVD--   61 (338)
Q Consensus         5 ~~eeAi~~y~kALeldPd~a~a~-nLG~~y----~~~---G~~dEAi~~~~k~~p~~~d-------------~lg~~d--   61 (338)
                      ++++++.++.++|.++|++..+| +++.++    ...   +++++++..+.++...++.             .++.++  
T Consensus        84 ~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~  163 (306)
T 3dra_A           84 NLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDA  163 (306)
T ss_dssp             CHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCH
T ss_pred             cHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChH
Confidence            89999999999999999999977 899998    777   8999999999995444433             267777  


Q ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC------HHHHHHHHHHHHccCCCCcc
Q 019586           62 SHLKAYERAQQMLKDLESEMMNKGGDRVEQSR------LFDAFLGSSSIWQPQPCKDH  113 (338)
Q Consensus        62 eAi~~yekAL~l~Pd~~~a~~nLG~~l~~lGr------~~eAi~~yekALkl~P~~~~  113 (338)
                      +++.+++++|+++|.+..+|++++.++...|+      +++++.++.+++.++|.+..
T Consensus       164 ~EL~~~~~~i~~d~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~n~S  221 (306)
T 3dra_A          164 KELSFVDKVIDTDLKNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKCPQNPS  221 (306)
T ss_dssp             HHHHHHHHHHHHCTTCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCSSCHH
T ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhCCCCcc
Confidence            99999999999999999999999999999998      99999999999999999876

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=98.59  E-value=2.4e-07  Score=76.80  Aligned_cols=100  Identities=11%  Similarity=0.046  Sum_probs=85.7

Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHcCCHHHHHHHHHh-hCcCCcC--------------CCCCHHHHHHHHH
Q 019586            4 NNYIEAEDAYRRALSIAPDNNKMCNLGICLMKQGRIGEAKETLRR-VKPAVAD--------------GPRGVDSHLKAYE   68 (338)
Q Consensus         4 g~~eeAi~~y~kALeldPd~a~a~nLG~~y~~~G~~dEAi~~~~k-~~p~~~d--------------~lg~~deAi~~ye   68 (338)
                      +++++|+.+|++|.+.+...  ++ ||.+|...+.+++|+.+|++ +...++.              ..+++++|+.+|+
T Consensus         9 ~d~~~A~~~~~~aa~~g~~~--a~-lg~~y~~g~~~~~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~   85 (138)
T 1klx_A            9 KDLKKAIQYYVKACELNEMF--GC-LSLVSNSQINKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDLRKAAQYYS   85 (138)
T ss_dssp             HHHHHHHHHHHHHHHTTCTT--HH-HHHHTCTTSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHcCCCHh--hh-HHHHHHcCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHcCCCCCccHHHHHHHHH
Confidence            46899999999999987444  44 99999999999999999999 3333333              2679999999999


Q ss_pred             HHHHhCCCCHHHHHHHHHHHHH----CCCHHHHHHHHHHHHccC
Q 019586           69 RAQQMLKDLESEMMNKGGDRVE----QSRLFDAFLGSSSIWQPQ  108 (338)
Q Consensus        69 kAL~l~Pd~~~a~~nLG~~l~~----lGr~~eAi~~yekALkl~  108 (338)
                      +|.+.  .++.++++||.+|..    .+++++|+.+|+++.+..
T Consensus        86 ~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g  127 (138)
T 1klx_A           86 KACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG  127 (138)
T ss_dssp             HHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred             HHHcC--CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence            99986  689999999999999    999999999999998764

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=98.59  E-value=1.4e-07  Score=91.82  Aligned_cols=157  Identities=6%  Similarity=-0.129  Sum_probs=111.7

Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcC-CHHHHHHHHHhhCcCCcCC-------------C-C-CHHHHHHH
Q 019586            4 NNYIEAEDAYRRALSIAPDNNKMC-NLGICLMKQG-RIGEAKETLRRVKPAVADG-------------P-R-GVDSHLKA   66 (338)
Q Consensus         4 g~~eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G-~~dEAi~~~~k~~p~~~d~-------------l-g-~~deAi~~   66 (338)
                      +..++|+.++.++|.++|++..+| .++.++...| .+++++..+.++...+|..             + + ++++++..
T Consensus        68 e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~~  147 (349)
T 3q7a_A           68 EKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIEY  147 (349)
T ss_dssp             CCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHHH
T ss_pred             CCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHHH
Confidence            345799999999999999999988 9999999999 5999998888854444431             2 5 77888888


Q ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHCCCHH--------HHHHHHHHHHccCCCCcccccch---hhhcCccHHHHHhhhhc
Q 019586           67 YERAQQMLKDLESEMMNKGGDRVEQSRLF--------DAFLGSSSIWQPQPCKDHILPTT---NAIKTRDDFADENIDSN  135 (338)
Q Consensus        67 yekAL~l~Pd~~~a~~nLG~~l~~lGr~~--------eAi~~yekALkl~P~~~~~l~~l---~~~~~~~~~A~e~~~~a  135 (338)
                      +.++++++|.+..+|+.++.++...|+++        +++.++.++++.+|.+.......   ....+..          
T Consensus       148 ~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~~R~~lL~~l~~~----------  217 (349)
T 3q7a_A          148 IHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNNSAWGWRWYLRVSRPGA----------  217 (349)
T ss_dssp             HHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTTSTTC----------
T ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcccc----------
Confidence            88888888888888888888888888887        88888888888888876522111   0011110          


Q ss_pred             ccCCChhhhhhhhhhhhcchHHHHHHhHhHHHHhhchhhhh
Q 019586          136 VDVNPIVLSKHRSVKKLFPTANAIKTQENFADENINANIVV  176 (338)
Q Consensus       136 l~~~P~~~~K~~~~~kl~~~~~ai~~~~~~~e~y~nlg~~~  176 (338)
                          +.  .+..--..+....++|...|+...++.++.-+.
T Consensus       218 ----~~--~~~~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll  252 (349)
T 3q7a_A          218 ----ET--SSRSLQDELIYILKSIHLIPHNVSAWNYLRGFL  252 (349)
T ss_dssp             ----CC--CHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             ----cc--chHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence                00  000011223344567778888888888866655

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=98.58  E-value=3.8e-07  Score=71.73  Aligned_cols=76  Identities=12%  Similarity=-0.062  Sum_probs=64.9

Q ss_pred             CCCCHHHH-HHHHHHHHcCCHHHHHHHHHhhCcCCcCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHH
Q 019586           20 APDNNKMC-NLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAF   98 (338)
Q Consensus        20 dPd~a~a~-nLG~~y~~~G~~dEAi~~~~k~~p~~~d~lg~~deAi~~yekAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi   98 (338)
                      +|++++.+ .+|.++...++-                  ...++|...+++|++++|+++.+++.+|.++++.|+|.+|+
T Consensus         2 ~p~~~~~~~~~a~al~~~~~~------------------~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai   63 (93)
T 3bee_A            2 NAVTATQLAAKATTLYYLHKQ------------------AMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAI   63 (93)
T ss_dssp             CCCCHHHHHHHHHHHHHTTTT------------------CCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHhcCC------------------CCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHH
Confidence            67888866 899988766551                  12367788888899999999999999999999999999999


Q ss_pred             HHHHHHHccCCCCcc
Q 019586           99 LGSSSIWQPQPCKDH  113 (338)
Q Consensus        99 ~~yekALkl~P~~~~  113 (338)
                      .+|+++++.+|..+.
T Consensus        64 ~~w~~~l~~~p~~~~   78 (93)
T 3bee_A           64 DTWVLLLDSNDPNLD   78 (93)
T ss_dssp             HHHHHHHTCCCTTCC
T ss_pred             HHHHHHHhhCCCCcc
Confidence            999999999999443

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=98.55  E-value=9e-07  Score=86.82  Aligned_cols=101  Identities=10%  Similarity=-0.037  Sum_probs=58.6

Q ss_pred             CCCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHH----cCCHHHHHHHHHhh-CcCCcC--------------CCCCHHH
Q 019586            3 QNNYIEAEDAYRRALSIAPDNNKMC-NLGICLMK----QGRIGEAKETLRRV-KPAVAD--------------GPRGVDS   62 (338)
Q Consensus         3 ~g~~eeAi~~y~kALeldPd~a~a~-nLG~~y~~----~G~~dEAi~~~~k~-~p~~~d--------------~lg~~de   62 (338)
                      .+++++|+.+|++|++.  ++..++ +||.+|..    .+++++|+.+|+++ ...++.              ..+++++
T Consensus       128 ~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~  205 (490)
T 2xm6_A          128 KVDKAESVKWFRLAAEQ--GRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQGNVWSCNQLGYMYSRGLGVERNDAI  205 (490)
T ss_dssp             CCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHH
T ss_pred             CCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCcCHHH
Confidence            45666666666666554  344544 66666666    66666666666662 222221              1456666


Q ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHH----CCCHHHHHHHHHHHHcc
Q 019586           63 HLKAYERAQQMLKDLESEMMNKGGDRVE----QSRLFDAFLGSSSIWQP  107 (338)
Q Consensus        63 Ai~~yekAL~l~Pd~~~a~~nLG~~l~~----lGr~~eAi~~yekALkl  107 (338)
                      |+.+|+++++.  .++.+++++|.+|..    .+++++|+.+|+++++.
T Consensus       206 A~~~~~~a~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~  252 (490)
T 2xm6_A          206 SAQWYRKSATS--GDELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQ  252 (490)
T ss_dssp             HHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC
Confidence            66666666553  345666666666665    56666666666666554

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=98.54  E-value=1.6e-07  Score=93.22  Aligned_cols=92  Identities=12%  Similarity=-0.014  Sum_probs=76.6

Q ss_pred             CCCCHHHHHHHHHHHHHh-----CCCCHH---HH-HHHHHHHHcCCHHHHHHHHHhhCcCCcCCCCCHHHHHHHHHHHHH
Q 019586            2 QQNNYIEAEDAYRRALSI-----APDNNK---MC-NLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQ   72 (338)
Q Consensus         2 q~g~~eeAi~~y~kALel-----dPd~a~---a~-nLG~~y~~~G~~dEAi~~~~k~~p~~~d~lg~~deAi~~yekAL~   72 (338)
                      ++|+|++|+..|++++++     .|+++.   .+ |||.+|..+|+|++|+.++++              ++..+++.+-
T Consensus       299 ~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~--------------~L~i~~~~lg  364 (429)
T 3qwp_A          299 AHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTR--------------TMEPYRIFFP  364 (429)
T ss_dssp             HTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHH--------------HHHHHHHHSC
T ss_pred             hhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHH--------------HHHhHHHHcC
Confidence            368999999999999986     466766   22 999999999999999999855              6777777643


Q ss_pred             -hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcc
Q 019586           73 -MLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQP  107 (338)
Q Consensus        73 -l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl  107 (338)
                       -.|+.+..+++||.+|..+|++++|+..|++|+++
T Consensus       365 ~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i  400 (429)
T 3qwp_A          365 GSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDI  400 (429)
T ss_dssp             SSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence             22444577899999999999999999999999875

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=98.53  E-value=5.7e-07  Score=86.76  Aligned_cols=108  Identities=9%  Similarity=-0.063  Sum_probs=96.5

Q ss_pred             HHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcCC--HHHHHHHHHhhCcCCcC-------------CCCC-HHHHHHHHH
Q 019586            6 YIEAEDAYRRALSIAPDNNKMC-NLGICLMKQGR--IGEAKETLRRVKPAVAD-------------GPRG-VDSHLKAYE   68 (338)
Q Consensus         6 ~eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G~--~dEAi~~~~k~~p~~~d-------------~lg~-~deAi~~ye   68 (338)
                      +++++.++..++..+|.+..+| +++.++...|+  |++++.++.++...++.             ..+. +++++.++.
T Consensus        90 l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~  169 (331)
T 3dss_A           90 VKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTD  169 (331)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHH
Confidence            7899999999999999999988 99999999994  99999999994443333             2566 699999999


Q ss_pred             HHHHhCCCCHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHccCCCCcc
Q 019586           69 RAQQMLKDLESEMMNKGGDRVEQ--------------SRLFDAFLGSSSIWQPQPCKDH  113 (338)
Q Consensus        69 kAL~l~Pd~~~a~~nLG~~l~~l--------------Gr~~eAi~~yekALkl~P~~~~  113 (338)
                      ++|+.+|.+..+|+++|.++...              +.+++++.++.+++.++|++..
T Consensus       170 ~~I~~~p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~S  228 (331)
T 3dss_A          170 SLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQS  228 (331)
T ss_dssp             HHHHHCSCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHH
T ss_pred             HHHHHCCCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHH
Confidence            99999999999999999999887              5689999999999999999876

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=98.52  E-value=3.1e-07  Score=90.03  Aligned_cols=108  Identities=7%  Similarity=-0.041  Sum_probs=80.5

Q ss_pred             CHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcCCH-------HHHH-HHHHh--hC---cCCcC----------CCCCH
Q 019586            5 NYIEAEDAYRRALSIAPDNNKMC-NLGICLMKQGRI-------GEAK-ETLRR--VK---PAVAD----------GPRGV   60 (338)
Q Consensus         5 ~~eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G~~-------dEAi-~~~~k--~~---p~~~d----------~lg~~   60 (338)
                      .+.+|+.+|++|++++|+++.++ .++.||.....+       -+++ ..++.  ..   |..+.          ..|++
T Consensus       214 ~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~~~~~~~a~~~~alal~~l~~gd~  293 (372)
T 3ly7_A          214 SLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPELNNLSIIYQIKAVSALVKGKT  293 (372)
T ss_dssp             HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCHHHHHHHHHHHHHHTCH
T ss_pred             HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhcccCCcCHHHHHHHHHHHHhCCCH
Confidence            46899999999999999999988 777777521111       0111 11112  12   22222          16899


Q ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCcc
Q 019586           61 DSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDH  113 (338)
Q Consensus        61 deAi~~yekAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~  113 (338)
                      ++|+..+++|+.++|+ ..+|..+|.++...|++++|+.+|++|+.++|....
T Consensus       294 d~A~~~l~rAl~Ln~s-~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~t  345 (372)
T 3ly7_A          294 DESYQAINTGIDLEMS-WLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGANT  345 (372)
T ss_dssp             HHHHHHHHHHHHHCCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHHH
T ss_pred             HHHHHHHHHHHhcCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcCh
Confidence            9999999999999975 678888999999999999999999999999997643

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=98.52  E-value=3.1e-07  Score=90.41  Aligned_cols=103  Identities=11%  Similarity=-0.011  Sum_probs=77.2

Q ss_pred             CHHHHHHHHHHHHHhCCCCHHH-HHHHHHHHHc----CCHHHHHHHHHhhCcCCcC-------------CCCCHHHHHHH
Q 019586            5 NYIEAEDAYRRALSIAPDNNKM-CNLGICLMKQ----GRIGEAKETLRRVKPAVAD-------------GPRGVDSHLKA   66 (338)
Q Consensus         5 ~~eeAi~~y~kALeldPd~a~a-~nLG~~y~~~----G~~dEAi~~~~k~~p~~~d-------------~lg~~deAi~~   66 (338)
                      ++++|+.+|++|++.++..+.. ++||.+|...    +++++|+.+|+++.+.++.             ..+++++|+.+
T Consensus       194 ~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~  273 (452)
T 3e4b_A          194 QQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIAPGYPASWVSLAQLLYDFPELGDVEQMMKY  273 (452)
T ss_dssp             HHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHGGGSTHHHHHHHHHHHHSGGGCCHHHHHHH
T ss_pred             cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Confidence            7788888888888888888776 4888888655    6888888888884355544             24688888888


Q ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHCC-----CHHHHHHHHHHHHccCCCCcc
Q 019586           67 YERAQQMLKDLESEMMNKGGDRVEQS-----RLFDAFLGSSSIWQPQPCKDH  113 (338)
Q Consensus        67 yekAL~l~Pd~~~a~~nLG~~l~~lG-----r~~eAi~~yekALkl~P~~~~  113 (338)
                      |++|++.  .++.++++||.+|. .|     ++++|+.+|+++.   |.++.
T Consensus       274 ~~~Aa~~--g~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa---~g~~~  319 (452)
T 3e4b_A          274 LDNGRAA--DQPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV---GREVA  319 (452)
T ss_dssp             HHHHHHT--TCHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT---TTCHH
T ss_pred             HHHHHHC--CCHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh---CCCHH
Confidence            8888764  47888888888887 55     8888888888877   55554

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=98.52  E-value=2.1e-07  Score=89.86  Aligned_cols=109  Identities=15%  Similarity=0.092  Sum_probs=80.1

Q ss_pred             HHHHHHHHcCCHHHHHHHHHhhCcCCcCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcc
Q 019586           28 NLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQP  107 (338)
Q Consensus        28 nLG~~y~~~G~~dEAi~~~~k~~p~~~d~lg~~deAi~~yekAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl  107 (338)
                      ++|.+|...|+|++|+..|+++....+..     .+....+++..++|....+|+++|.+|..+|++++|+.+|++++++
T Consensus       228 ~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~-----~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~  302 (370)
T 1ihg_A          228 NIGNTFFKSQNWEMAIKKYTKVLRYVEGS-----RAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEI  302 (370)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHH-----HHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHhcCHHHHHHHHHHHHHHhhcC-----ccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh
Confidence            99999999999988888876621100000     0111223344478888999999999999999999999999999999


Q ss_pred             CCCCcccc---cchhhhcCccHHHHHhhhhcccCCCh
Q 019586          108 QPCKDHIL---PTTNAIKTRDDFADENIDSNVDVNPI  141 (338)
Q Consensus       108 ~P~~~~~l---~~l~~~~~~~~~A~e~~~~al~~~P~  141 (338)
                      +|.++..+   +.+....++.+.|...+..++.++|.
T Consensus       303 ~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~  339 (370)
T 1ihg_A          303 DPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPE  339 (370)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             CchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Confidence            99987733   33356777777788877777776665

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=98.49  E-value=3.8e-07  Score=86.37  Aligned_cols=136  Identities=13%  Similarity=0.122  Sum_probs=102.3

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCCHH------------------HHHHHHHHHHcCCHHHHHHHHHhhCc---CCc------
Q 019586            2 QQNNYIEAEDAYRRALSIAPDNNK------------------MCNLGICLMKQGRIGEAKETLRRVKP---AVA------   54 (338)
Q Consensus         2 q~g~~eeAi~~y~kALeldPd~a~------------------a~nLG~~y~~~G~~dEAi~~~~k~~p---~~~------   54 (338)
                      ..|+|++|+..|.++++..|...+                  ..++|.+|..+|+|++|+.+|.++.+   ...      
T Consensus        16 ~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~   95 (434)
T 4b4t_Q           16 NEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVK   95 (434)
T ss_dssp             HHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHH
T ss_pred             HCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHH
Confidence            368999999999999999886532                  23999999999999999999998432   111      


Q ss_pred             ----------CCCCCHHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCcc-----
Q 019586           55 ----------DGPRGVDSHLKAYERAQQML------KDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDH-----  113 (338)
Q Consensus        55 ----------d~lg~~deAi~~yekAL~l~------Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~-----  113 (338)
                                ...|++++|+..+++++.+.      +....++.+||.+|..+|+|.+|..++++++........     
T Consensus        96 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~  175 (434)
T 4b4t_Q           96 VLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLV  175 (434)
T ss_dssp             HHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHH
T ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHH
Confidence                      14789999999999999864      334678999999999999999999999998876443222     


Q ss_pred             ----cccchhhhcCccHHHHHhhhhccc
Q 019586          114 ----ILPTTNAIKTRDDFADENIDSNVD  137 (338)
Q Consensus       114 ----~l~~l~~~~~~~~~A~e~~~~al~  137 (338)
                          ..+.+....+....|...+..++.
T Consensus       176 ~~~~~~~~~~~~~~~~~~A~~~~~~al~  203 (434)
T 4b4t_Q          176 DVHLLESKVYHKLRNLAKSKASLTAART  203 (434)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence                111223455666666666655543

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=98.43  E-value=2e-07  Score=74.24  Aligned_cols=83  Identities=12%  Similarity=0.008  Sum_probs=70.3

Q ss_pred             HHHHHHHHcCCHHHHHHHHHhhCc---CCcC----------------CCCCHHHHHHHHHHHHHhCCCC------HHHHH
Q 019586           28 NLGICLMKQGRIGEAKETLRRVKP---AVAD----------------GPRGVDSHLKAYERAQQMLKDL------ESEMM   82 (338)
Q Consensus        28 nLG~~y~~~G~~dEAi~~~~k~~p---~~~d----------------~lg~~deAi~~yekAL~l~Pd~------~~a~~   82 (338)
                      ++|.+|...|++++|+.+|+++..   ...+                ..|++++|+.+|++++++.+..      ..++.
T Consensus        14 ~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~   93 (164)
T 3ro3_A           14 NLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCY   93 (164)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHH
Confidence            999999999999999999999332   2111                2889999999999999987553      57889


Q ss_pred             HHHHHHHHCCCHHHHHHHHHHHHccCCC
Q 019586           83 NKGGDRVEQSRLFDAFLGSSSIWQPQPC  110 (338)
Q Consensus        83 nLG~~l~~lGr~~eAi~~yekALkl~P~  110 (338)
                      ++|.++..+|++++|+.+|++++++.+.
T Consensus        94 ~l~~~~~~~~~~~~A~~~~~~a~~~~~~  121 (164)
T 3ro3_A           94 SLGNTYTLLQDYEKAIDYHLKHLAIAQE  121 (164)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999987543

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=98.42  E-value=9.6e-07  Score=85.87  Aligned_cols=109  Identities=9%  Similarity=-0.106  Sum_probs=98.5

Q ss_pred             CHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHc-C-CHHHHHHHHHhhCcCCcCC-------------CCCHH-------
Q 019586            5 NYIEAEDAYRRALSIAPDNNKMC-NLGICLMKQ-G-RIGEAKETLRRVKPAVADG-------------PRGVD-------   61 (338)
Q Consensus         5 ~~eeAi~~y~kALeldPd~a~a~-nLG~~y~~~-G-~~dEAi~~~~k~~p~~~d~-------------lg~~d-------   61 (338)
                      .+++++.++.++|..+|++..+| +++.++... + ++++++..+.++...++..             ++.++       
T Consensus       104 ~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~  183 (349)
T 3q7a_A          104 SLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQW  183 (349)
T ss_dssp             CHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHH
T ss_pred             hHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhH
Confidence            59999999999999999999988 999999998 8 9999999999976666551             33444       


Q ss_pred             -HHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC-------HHHHHHHHHHHHccCCCCcc
Q 019586           62 -SHLKAYERAQQMLKDLESEMMNKGGDRVEQSR-------LFDAFLGSSSIWQPQPCKDH  113 (338)
Q Consensus        62 -eAi~~yekAL~l~Pd~~~a~~nLG~~l~~lGr-------~~eAi~~yekALkl~P~~~~  113 (338)
                       +++.+++++|+++|.+..+|+++|.++..+++       +++++.++.+++.++|.+..
T Consensus       184 ~eELe~~~k~I~~dp~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~P~n~S  243 (349)
T 3q7a_A          184 GSELDWCNEMLRVDGRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLIPHNVS  243 (349)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHCTTCHH
T ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhCCCCHH
Confidence             99999999999999999999999999999998       79999999999999999876

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=98.39  E-value=2.6e-07  Score=72.38  Aligned_cols=81  Identities=12%  Similarity=-0.032  Sum_probs=68.3

Q ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCccc---ccchhhhcCccHHHHHhhhhccc
Q 019586           61 DSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDHI---LPTTNAIKTRDDFADENIDSNVD  137 (338)
Q Consensus        61 deAi~~yekAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~~---l~~l~~~~~~~~~A~e~~~~al~  137 (338)
                      ++|+..|+++++++|+++.+|+++|.+|...|++++|+.+|+++++++|.+...   ++.+....++.+.|...+..++.
T Consensus         2 ~~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~   81 (115)
T 2kat_A            2 QAITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLA   81 (115)
T ss_dssp             CCHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            358899999999999999999999999999999999999999999999998763   33345677777788887777766


Q ss_pred             CCCh
Q 019586          138 VNPI  141 (338)
Q Consensus       138 ~~P~  141 (338)
                      .+|.
T Consensus        82 ~~~~   85 (115)
T 2kat_A           82 AAQS   85 (115)
T ss_dssp             HHHH
T ss_pred             hccc
Confidence            5553

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=98.32  E-value=2.7e-06  Score=83.66  Aligned_cols=101  Identities=10%  Similarity=-0.002  Sum_probs=85.4

Q ss_pred             CCCHHHHHHHHHHHHHhCCCCHHHH-HHHHH-H--HHcCCHHHHHHHHHh-hCcCCcCC--------------CCCHHHH
Q 019586            3 QNNYIEAEDAYRRALSIAPDNNKMC-NLGIC-L--MKQGRIGEAKETLRR-VKPAVADG--------------PRGVDSH   63 (338)
Q Consensus         3 ~g~~eeAi~~y~kALeldPd~a~a~-nLG~~-y--~~~G~~dEAi~~~~k-~~p~~~d~--------------lg~~deA   63 (338)
                      .+++++|+.+|+++.   |+++.++ +||.+ |  ...+++++|+.+|++ +...++.+              ..++++|
T Consensus       230 ~~d~~~A~~~~~~aa---~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~G~g~~~d~~~A  306 (452)
T 3e4b_A          230 TPDEKTAQALLEKIA---PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAADQPRAELLLGKLYYEGKWVPADAKAA  306 (452)
T ss_dssp             SCCHHHHHHHHHHHG---GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred             CCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHH
Confidence            368999999999998   8888866 99999 4  578999999999999 44444431              3399999


Q ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHH----CCCHHHHHHHHHHHHccCC
Q 019586           64 LKAYERAQQMLKDLESEMMNKGGDRVE----QSRLFDAFLGSSSIWQPQP  109 (338)
Q Consensus        64 i~~yekAL~l~Pd~~~a~~nLG~~l~~----lGr~~eAi~~yekALkl~P  109 (338)
                      +.+|++|.   +.++.++++||.+|..    ..++++|+.+|+++.+...
T Consensus       307 ~~~~~~Aa---~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~  353 (452)
T 3e4b_A          307 EAHFEKAV---GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQ  353 (452)
T ss_dssp             HHHHHTTT---TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTC
T ss_pred             HHHHHHHh---CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhCh
Confidence            99999998   9999999999998887    4499999999999987543

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=98.30  E-value=2.5e-06  Score=73.80  Aligned_cols=91  Identities=9%  Similarity=0.114  Sum_probs=77.7

Q ss_pred             CHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcCCHHHHHHHHHhhCcCCcCCCCCHHHHHHHHHHHHHhC-C-CCHHHH
Q 019586            5 NYIEAEDAYRRALSIAPDNNKMC-NLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQML-K-DLESEM   81 (338)
Q Consensus         5 ~~eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k~~p~~~d~lg~~deAi~~yekAL~l~-P-d~~~a~   81 (338)
                      ....++..|.++++.++...+.. ++|+++.+.++...                  .++++..|+..++.+ | +..+++
T Consensus        13 ~l~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~------------------~~~gI~lLe~ll~~~~p~~~rd~l   74 (152)
T 1pc2_A           13 DLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDD------------------IRKGIVLLEELLPKGSKEEQRDYV   74 (152)
T ss_dssp             HHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHH------------------HHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHH------------------HHHHHHHHHHHHhcCCccchHHHH
Confidence            45678899999999888888855 99999999884421                  266777778888888 7 568999


Q ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHccCCCCcc
Q 019586           82 MNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDH  113 (338)
Q Consensus        82 ~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~  113 (338)
                      |+||..++++|+|++|+.+++++|+++|++.+
T Consensus        75 Y~LAv~~~kl~~Y~~A~~y~~~lL~ieP~n~Q  106 (152)
T 1pc2_A           75 FYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQ  106 (152)
T ss_dssp             HHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHH
T ss_pred             HHHHHHHHHccCHHHHHHHHHHHHhcCCCCHH
Confidence            99999999999999999999999999999876

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=98.28  E-value=1.6e-06  Score=67.16  Aligned_cols=47  Identities=19%  Similarity=0.258  Sum_probs=41.2

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcCCHHHHHHHHHh
Q 019586            2 QQNNYIEAEDAYRRALSIAPDNNKMC-NLGICLMKQGRIGEAKETLRR   48 (338)
Q Consensus         2 q~g~~eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k   48 (338)
                      ..|+|++|+.+|+++++++|++..+| ++|.+|..+|++++|+..|++
T Consensus        19 ~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~   66 (100)
T 3ma5_A           19 KHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQ   66 (100)
T ss_dssp             HTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            47999999999999999999999977 999999999999665555544

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=98.26  E-value=4.1e-06  Score=93.73  Aligned_cols=180  Identities=12%  Similarity=-0.049  Sum_probs=124.9

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHcCCHHHHHHHHHhhCcCCcC--------CCCCHHHHHHHHHHHHHh
Q 019586            2 QQNNYIEAEDAYRRALSIAPDNNKMCNLGICLMKQGRIGEAKETLRRVKPAVAD--------GPRGVDSHLKAYERAQQM   73 (338)
Q Consensus         2 q~g~~eeAi~~y~kALeldPd~a~a~nLG~~y~~~G~~dEAi~~~~k~~p~~~d--------~lg~~deAi~~yekAL~l   73 (338)
                      ..|.|+||..+|+++-     . ....++..+...|+|++|+++++++.....+        ..|++++|+.+|.+|   
T Consensus      1061 ~lglyEEAf~IYkKa~-----~-~~~A~~VLie~i~nldrAiE~Aervn~p~vWsqLAKAql~~G~~kEAIdsYiKA--- 1131 (1630)
T 1xi4_A         1061 SNELFEEAFAIFRKFD-----V-NTSAVQVLIEHIGNLDRAYEFAERCNEPAVWSQLAKAQLQKGMVKEAIDSYIKA--- 1131 (1630)
T ss_pred             hCCCHHHHHHHHHHcC-----C-HHHHHHHHHHHHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCHHHHHHHHHhc---
Confidence            4689999999999972     1 1114455566899999999999997554433        489999999999886   


Q ss_pred             CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCc-c-cccchhhhcCccHHHHHhhhhcccCCChhhhhhhhhhh
Q 019586           74 LKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKD-H-ILPTTNAIKTRDDFADENIDSNVDVNPIVLSKHRSVKK  151 (338)
Q Consensus        74 ~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~-~-~l~~l~~~~~~~~~A~e~~~~al~~~P~~~~K~~~~~k  151 (338)
                        +++..|+.+|.++.+.|+|++|+.+|..+.+..+... . .++...++.++.+. .+.+..... .+.....+..+..
T Consensus      1132 --dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~Idt~LafaYAKl~rlee-le~fI~~~n-~ad~~~iGd~le~ 1207 (1630)
T 1xi4_A         1132 --DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNRLAE-LEEFINGPN-NAHIQQVGDRCYD 1207 (1630)
T ss_pred             --CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccccccHHHHHHHHhhcCHHH-HHHHHhCCC-HHHHHHHHHHHHh
Confidence              8899999999999999999999999999998885531 1 11111233344443 333333222 2345556666667


Q ss_pred             hcchHHHHHHhHhHHHHhhchhhhhhHhhhhhhhhhhhhccccccCCC
Q 019586          152 LFPTANAIKTQENFADENINANIVVNQTVLAQQRGVQQLAPFGNSWNI  199 (338)
Q Consensus       152 l~~~~~ai~~~~~~~e~y~nlg~~~~~~~~~d~r~~~~~~~~~~~~~~  199 (338)
                      ...+..|+.+..+. ..|..++.    .+....++.+|+.++..+.+.
T Consensus      1208 eg~YeeA~~~Y~kA-~ny~rLA~----tLvkLge~q~AIEaarKA~n~ 1250 (1630)
T 1xi4_A         1208 EKMYDAAKLLYNNV-SNFGRLAS----TLVHLGEYQAAVDGARKANST 1250 (1630)
T ss_pred             cCCHHHHHHHHHhh-hHHHHHHH----HHHHhCCHHHHHHHHHHhCCH
Confidence            77777787776664 46666666    445556677777777666554

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=98.20  E-value=7.2e-06  Score=64.66  Aligned_cols=68  Identities=16%  Similarity=0.071  Sum_probs=56.1

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHhhCcCCcCCCCCHHHHHHHHHHHHHh-------CCCCHHHHHHHHHHHHHCCCHHHHH
Q 019586           26 MCNLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQM-------LKDLESEMMNKGGDRVEQSRLFDAF   98 (338)
Q Consensus        26 a~nLG~~y~~~G~~dEAi~~~~k~~p~~~d~lg~~deAi~~yekAL~l-------~Pd~~~a~~nLG~~l~~lGr~~eAi   98 (338)
                      .+.+|..+..+|+|..|+.+|                     ++|++.       .+..+.++.+||.++.++|++++|+
T Consensus         8 c~~lG~~~~~~~~y~~A~~W~---------------------~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~   66 (104)
T 2v5f_A            8 CFELGKVAYTEADYYHTELWM---------------------EQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKAL   66 (104)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHH---------------------HHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHccchHHHHHHH---------------------HHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHH
Confidence            349999999999996555555                     445554       2456789999999999999999999


Q ss_pred             HHHHHHHccCCCCccc
Q 019586           99 LGSSSIWQPQPCKDHI  114 (338)
Q Consensus        99 ~~yekALkl~P~~~~~  114 (338)
                      .+++++++++|++...
T Consensus        67 ~~~~~al~l~P~~~~~   82 (104)
T 2v5f_A           67 LLTKKLLELDPEHQRA   82 (104)
T ss_dssp             HHHHHHHHHCTTCHHH
T ss_pred             HHHHHHHhcCCCCHHH
Confidence            9999999999998764

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=98.16  E-value=3.3e-06  Score=80.83  Aligned_cols=104  Identities=8%  Similarity=0.043  Sum_probs=76.2

Q ss_pred             CCCHHHHHHHHHHHHHhCC--CCHHHH-HHHHHHHHcCCHHHHHHHHHhhCcCCc------C---------------CCC
Q 019586            3 QNNYIEAEDAYRRALSIAP--DNNKMC-NLGICLMKQGRIGEAKETLRRVKPAVA------D---------------GPR   58 (338)
Q Consensus         3 ~g~~eeAi~~y~kALeldP--d~a~a~-nLG~~y~~~G~~dEAi~~~~k~~p~~~------d---------------~lg   58 (338)
                      .|++++|+.++.+.|..+|  ++.+++ .++.+|..+|+.+.|.+.++++...++      +               .-+
T Consensus       113 ~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~~d~~~~~d~~l~~Laea~v~l~~g~~  192 (310)
T 3mv2_B          113 LGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNAIEDTVSGDNEMILNLAESYIKFATNKE  192 (310)
T ss_dssp             HTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHTCS
T ss_pred             cCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCccccccchHHHHHHHHHHHHHHhCCc
Confidence            4788888888888888886  566666 888888888888888888876332222      1               123


Q ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcc
Q 019586           59 GVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQP  107 (338)
Q Consensus        59 ~~deAi~~yekAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl  107 (338)
                      ++.+|...|+++.+..|++......++ ++..+|++++|...++.+++.
T Consensus       193 ~~q~A~~~f~El~~~~p~~~~~~lLln-~~~~~g~~~eAe~~L~~l~~~  240 (310)
T 3mv2_B          193 TATSNFYYYEELSQTFPTWKTQLGLLN-LHLQQRNIAEAQGIVELLLSD  240 (310)
T ss_dssp             TTTHHHHHHHHHHTTSCSHHHHHHHHH-HHHHHTCHHHHHHHHHHHHSH
T ss_pred             cHHHHHHHHHHHHHhCCCcccHHHHHH-HHHHcCCHHHHHHHHHHHHHh
Confidence            888888888888877776333222222 888888888888888877776

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=98.12  E-value=8.6e-06  Score=77.55  Aligned_cols=88  Identities=11%  Similarity=0.033  Sum_probs=75.5

Q ss_pred             CHHHHHHHHHHHHHhCCCCHH--HH-HHHHHHHHc-----CCHHHHHHHHHhhCcCCcCCCCCHHHHHHHHHHHHHhCCC
Q 019586            5 NYIEAEDAYRRALSIAPDNNK--MC-NLGICLMKQ-----GRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKD   76 (338)
Q Consensus         5 ~~eeAi~~y~kALeldPd~a~--a~-nLG~~y~~~-----G~~dEAi~~~~k~~p~~~d~lg~~deAi~~yekAL~l~Pd   76 (338)
                      ...+|...+++|++++|+...  +| .||.+|...     |+.                     ++|..+|++|++++|+
T Consensus       178 ~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~---------------------ekA~~~ferAL~LnP~  236 (301)
T 3u64_A          178 TVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGM---------------------EKAHTAFEHLTRYCSA  236 (301)
T ss_dssp             HHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCH---------------------HHHHHHHHHHHHHCCT
T ss_pred             hHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCH---------------------HHHHHHHHHHHHhCCC
Confidence            357899999999999999544  77 999888774     666                     7777778889999997


Q ss_pred             C-HHHHHHHHHHHHH-CCCHHHHHHHHHHHHccCCCC-cc
Q 019586           77 L-ESEMMNKGGDRVE-QSRLFDAFLGSSSIWQPQPCK-DH  113 (338)
Q Consensus        77 ~-~~a~~nLG~~l~~-lGr~~eAi~~yekALkl~P~~-~~  113 (338)
                      . ...++.+|..+.. +|++++|..+++++++.+|.. +.
T Consensus       237 ~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~~~P~  276 (301)
T 3u64_A          237 HDPDHHITYADALCIPLNNRAGFDEALDRALAIDPESVPH  276 (301)
T ss_dssp             TCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGGGCSS
T ss_pred             CCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCCC
Confidence            5 9999999999988 599999999999999999985 44

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=98.06  E-value=8.2e-06  Score=82.37  Aligned_cols=89  Identities=11%  Similarity=0.029  Sum_probs=75.1

Q ss_pred             CCCCHHHHHHHHHHHHHh-----CCCCHH---HH-HHHHHHHHcCCHHHHHHHHHhhCcCCcCCCCCHHHHHHHHHHHHH
Q 019586            2 QQNNYIEAEDAYRRALSI-----APDNNK---MC-NLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQ   72 (338)
Q Consensus         2 q~g~~eeAi~~y~kALel-----dPd~a~---a~-nLG~~y~~~G~~dEAi~~~~k~~p~~~d~lg~~deAi~~yekAL~   72 (338)
                      .+|+|++|+.+|+++|++     .|+++.   .+ |||.+|..+|+|++|+.+|++              |+..+++.+ 
T Consensus       363 ~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~--------------Al~i~~~~l-  427 (490)
T 3n71_A          363 YLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICK--------------AYAILLVTH-  427 (490)
T ss_dssp             HTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHH--------------HHHHHHHHT-
T ss_pred             HhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHH--------------HHHHHHHHh-
Confidence            479999999999999987     577777   22 999999999999999999855              777777764 


Q ss_pred             hCCCCH---HHHHHHHHHHHHCCCHHHHHHHHHHHHc
Q 019586           73 MLKDLE---SEMMNKGGDRVEQSRLFDAFLGSSSIWQ  106 (338)
Q Consensus        73 l~Pd~~---~a~~nLG~~l~~lGr~~eAi~~yekALk  106 (338)
                       .|+++   +.+.+|+.++.++|+|.+|...|.++.+
T Consensus       428 -G~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~  463 (490)
T 3n71_A          428 -GPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE  463 (490)
T ss_dssp             -CTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             -CCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             46665   5678899999999999999999988754

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=98.01  E-value=8.3e-06  Score=78.07  Aligned_cols=112  Identities=12%  Similarity=-0.012  Sum_probs=95.7

Q ss_pred             CCCCHHHHHHHHHHHHHhCCC-----CHHHHHH--HHHHHHcC--CHHHHHHHHHhhCcCCcC------------CCCCH
Q 019586            2 QQNNYIEAEDAYRRALSIAPD-----NNKMCNL--GICLMKQG--RIGEAKETLRRVKPAVAD------------GPRGV   60 (338)
Q Consensus         2 q~g~~eeAi~~y~kALeldPd-----~a~a~nL--G~~y~~~G--~~dEAi~~~~k~~p~~~d------------~lg~~   60 (338)
                      +.|+.+.|.+.+++..+.+|+     +....+|  |++....|  ++.+|...|+++...+++            .+|++
T Consensus       148 ~~~r~d~A~k~l~~~~~~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln~~~~~g~~  227 (310)
T 3mv2_B          148 LNNNVSTASTIFDNYTNAIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLNLHLQQRNI  227 (310)
T ss_dssp             HTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHHHHHHHTCH
T ss_pred             HCCCHHHHHHHHHHHHhcCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHHHHHHcCCH
Confidence            578999999999999999993     4444455  44466667  999999999997777765            38999


Q ss_pred             HHHHHHHHHHHHh----------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCcccc
Q 019586           61 DSHLKAYERAQQM----------LKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDHIL  115 (338)
Q Consensus        61 deAi~~yekAL~l----------~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~~l  115 (338)
                      ++|...+++++++          +|+++.++.|+..+...+|+  +|.++++++.+.+|+++.++
T Consensus       228 ~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i~  290 (310)
T 3mv2_B          228 AEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFIK  290 (310)
T ss_dssp             HHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHHH
T ss_pred             HHHHHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHHH
Confidence            9999999988877          58999999999999999998  99999999999999998743

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=97.99  E-value=2.4e-05  Score=61.56  Aligned_cols=64  Identities=17%  Similarity=0.148  Sum_probs=52.9

Q ss_pred             CCCCHHHHHHHHHHHHHhC-------CCCHHHH-HHHHHHHHcCCHHHHHHHHHhhCcCCcCCCCCHHHHHHHHHHHHHh
Q 019586            2 QQNNYIEAEDAYRRALSIA-------PDNNKMC-NLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQM   73 (338)
Q Consensus         2 q~g~~eeAi~~y~kALeld-------Pd~a~a~-nLG~~y~~~G~~dEAi~~~~k~~p~~~d~lg~~deAi~~yekAL~l   73 (338)
                      +.|+|..|+.+|++|+...       +.....+ +||.||.++|++                     +.|+..+++++++
T Consensus        17 ~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~---------------------~~A~~~~~~al~l   75 (104)
T 2v5f_A           17 TEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDL---------------------DKALLLTKKLLEL   75 (104)
T ss_dssp             HTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCH---------------------HHHHHHHHHHHHH
T ss_pred             HccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCH---------------------HHHHHHHHHHHhc
Confidence            4689999999999999974       2334455 999999999999                     5566666779999


Q ss_pred             CCCCHHHHHHHHH
Q 019586           74 LKDLESEMMNKGG   86 (338)
Q Consensus        74 ~Pd~~~a~~nLG~   86 (338)
                      +|++..++.|++.
T Consensus        76 ~P~~~~~~~n~~~   88 (104)
T 2v5f_A           76 DPEHQRANGNLKY   88 (104)
T ss_dssp             CTTCHHHHHHHHH
T ss_pred             CCCCHHHHhhHHH
Confidence            9999999998873

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=97.95  E-value=2.4e-05  Score=87.73  Aligned_cols=130  Identities=7%  Similarity=0.003  Sum_probs=93.4

Q ss_pred             CCCCHHHHHHHHHHHHHhCCC----CHHHH----------------------------HHHHHHHHcCCHHHHHHHHHhh
Q 019586            2 QQNNYIEAEDAYRRALSIAPD----NNKMC----------------------------NLGICLMKQGRIGEAKETLRRV   49 (338)
Q Consensus         2 q~g~~eeAi~~y~kALeldPd----~a~a~----------------------------nLG~~y~~~G~~dEAi~~~~k~   49 (338)
                      ..|.+.+|++.|++++ +.|.    +...+                            .+|.++...|+|+||...|+++
T Consensus       997 ~aglp~EaieLLEKiv-l~~s~fs~n~~LqnlLi~tAIkaD~~Rv~eyI~kLd~~d~~eIA~Iai~lglyEEAf~IYkKa 1075 (1630)
T 1xi4_A          997 TADLPNELIELLEKIV-LDNSVFSEHRNLQNLLILTAIKADRTRVMEYINRLDNYDAPDIANIAISNELFEEAFAIFRKF 1075 (1630)
T ss_pred             hCCCHHHHHHHHHHHH-cCCCcccccHHHHHHHHHHHHHhChhhHHHHHHHhhhccHHHHHHHHHhCCCHHHHHHHHHHc
Confidence            4688999999999998 5554    22221                            1388999999999999999995


Q ss_pred             CcCCcC-------CCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCcccccchhhhc
Q 019586           50 KPAVAD-------GPRGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDHILPTTNAIK  122 (338)
Q Consensus        50 ~p~~~d-------~lg~~deAi~~yekAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~~l~~l~~~~  122 (338)
                      . .+..       ..+++++|++.+++     .+.+.+|+.+|.++...|++++|+.+|.++  -+|..-.-.+......
T Consensus      1076 ~-~~~~A~~VLie~i~nldrAiE~Aer-----vn~p~vWsqLAKAql~~G~~kEAIdsYiKA--dD~say~eVa~~~~~l 1147 (1630)
T 1xi4_A         1076 D-VNTSAVQVLIEHIGNLDRAYEFAER-----CNEPAVWSQLAKAQLQKGMVKEAIDSYIKA--DDPSSYMEVVQAANTS 1147 (1630)
T ss_pred             C-CHHHHHHHHHHHHhhHHHHHHHHHh-----cCCHHHHHHHHHHHHhCCCHHHHHHHHHhc--CChHHHHHHHHHHHHc
Confidence            4 2222       24566666666654     477999999999999999999999999887  2222211222335677


Q ss_pred             CccHHHHHhhhhcccCCC
Q 019586          123 TRDDFADENIDSNVDVNP  140 (338)
Q Consensus       123 ~~~~~A~e~~~~al~~~P  140 (338)
                      +..+.+.+.+..+....+
T Consensus      1148 GkyEEAIeyL~mArk~~~ 1165 (1630)
T 1xi4_A         1148 GNWEELVKYLQMARKKAR 1165 (1630)
T ss_pred             CCHHHHHHHHHHHHhhcc
Confidence            888888888877665553

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.91  E-value=5.1e-06  Score=78.54  Aligned_cols=110  Identities=5%  Similarity=-0.137  Sum_probs=89.5

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCCHHH------H-HHHHHHHHcCCHHHHHHHHHhhCc------CCcC-------------
Q 019586            2 QQNNYIEAEDAYRRALSIAPDNNKM------C-NLGICLMKQGRIGEAKETLRRVKP------AVAD-------------   55 (338)
Q Consensus         2 q~g~~eeAi~~y~kALeldPd~a~a------~-nLG~~y~~~G~~dEAi~~~~k~~p------~~~d-------------   55 (338)
                      ..|+|++|+.+|.+++.+.+.....      . ++|.++...|++++|+.+++++..      ....             
T Consensus        67 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~  146 (434)
T 4b4t_Q           67 TMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHY  146 (434)
T ss_dssp             HHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHH
T ss_pred             HCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHH
Confidence            3589999999999999987665442      2 889999999999999999988321      1111             


Q ss_pred             CCCCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCC
Q 019586           56 GPRGVDSHLKAYERAQQM------LKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCK  111 (338)
Q Consensus        56 ~lg~~deAi~~yekAL~l------~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~  111 (338)
                      ..|++++|+..+++++..      .+....++..+|.+|..+|++++|..+|++++.+.+..
T Consensus       147 ~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~  208 (434)
T 4b4t_Q          147 QKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSI  208 (434)
T ss_dssp             HHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS
T ss_pred             HccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcC
Confidence            268999999999999886      34456889999999999999999999999999886643

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=97.81  E-value=5.7e-05  Score=71.87  Aligned_cols=91  Identities=12%  Similarity=0.020  Sum_probs=72.3

Q ss_pred             CCcCCCCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHC-----CCHHHHHHHHHHHHccCCCC-cc---cccchhh
Q 019586           52 AVADGPRGVDSHLKAYERAQQMLKD--LESEMMNKGGDRVEQ-----SRLFDAFLGSSSIWQPQPCK-DH---ILPTTNA  120 (338)
Q Consensus        52 ~~~d~lg~~deAi~~yekAL~l~Pd--~~~a~~nLG~~l~~l-----Gr~~eAi~~yekALkl~P~~-~~---~l~~l~~  120 (338)
                      .....++....|...+++|++++|+  ++.+|..||.+|...     |+.++|..+|++|++++|+. ..   .++....
T Consensus       171 gg~~Al~~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~  250 (301)
T 3u64_A          171 LGSALPDTVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALC  250 (301)
T ss_dssp             TTSCCHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTT
T ss_pred             CChHHHHhHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHH
Confidence            3344566889999999999999999  567999999999995     99999999999999999975 44   2222122


Q ss_pred             h-cCccHHHHHhhhhcccCCChh
Q 019586          121 I-KTRDDFADENIDSNVDVNPIV  142 (338)
Q Consensus       121 ~-~~~~~~A~e~~~~al~~~P~~  142 (338)
                      . .++.+.+...+..++..+|..
T Consensus       251 ~~~gd~~~a~~~L~kAL~a~p~~  273 (301)
T 3u64_A          251 IPLNNRAGFDEALDRALAIDPES  273 (301)
T ss_dssp             TTTTCHHHHHHHHHHHHHCCGGG
T ss_pred             HhcCCHHHHHHHHHHHHcCCCCC
Confidence            3 467788888888888877763

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=97.67  E-value=3.8e-05  Score=76.96  Aligned_cols=102  Identities=9%  Similarity=0.009  Sum_probs=61.0

Q ss_pred             CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHcCCHHHHHHHHHhhCcCCcC--------CCCCHHHHHHHHHHHHHhC
Q 019586            3 QNNYIEAEDAYRRALSIAPDNNKMCNLGICLMKQGRIGEAKETLRRVKPAVAD--------GPRGVDSHLKAYERAQQML   74 (338)
Q Consensus         3 ~g~~eeAi~~y~kALeldPd~a~a~nLG~~y~~~G~~dEAi~~~~k~~p~~~d--------~lg~~deAi~~yekAL~l~   74 (338)
                      .|+|++|+.+|.++       ..+..+|.||.++|+|++|+..|+++.....+        ..|+++.|..+..+ |.+.
T Consensus       135 ~g~yeeA~~~Y~~a-------~n~~~LA~~L~~Lg~yq~AVea~~KA~~~~~Wk~v~~aCv~~~ef~lA~~~~l~-L~~~  206 (449)
T 1b89_A          135 EKMYDAAKLLYNNV-------SNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLH-IVVH  206 (449)
T ss_dssp             --CTTTHHHHHHHT-------TCHHHHHHHHHTTTCHHHHHHHHHHHTCHHHHHHHHHHHHHTTCHHHHHHTTTT-TTTC
T ss_pred             cCCHHHHHHHHHHh-------hhHHHHHHHHHHhccHHHHHHHHHHcCCchhHHHHHHHHHHcCcHHHHHHHHHH-HHhC
Confidence            45666666666655       11226666666666666666666665311111        15566666555553 2233


Q ss_pred             CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCcccc
Q 019586           75 KDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDHIL  115 (338)
Q Consensus        75 Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~~l  115 (338)
                         ++-...+...|.+.|++++|+..++.++.+++.+..+.
T Consensus       207 ---ad~l~~lv~~Yek~G~~eEai~lLe~aL~le~ah~~~f  244 (449)
T 1b89_A          207 ---ADELEELINYYQDRGYFEELITMLEAALGLERAHMGMF  244 (449)
T ss_dssp             ---HHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHH
T ss_pred             ---HhhHHHHHHHHHHCCCHHHHHHHHHHHhCCcHHHHHHH
Confidence               33344566788888888888888888888887776544

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=97.63  E-value=1.3e-05  Score=80.35  Aligned_cols=93  Identities=19%  Similarity=0.159  Sum_probs=26.2

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHcCCHHHHHHHHHhhCcCCcC---------CCCCHHHHHHHHHHHHH
Q 019586            2 QQNNYIEAEDAYRRALSIAPDNNKMCNLGICLMKQGRIGEAKETLRRVKPAVAD---------GPRGVDSHLKAYERAQQ   72 (338)
Q Consensus         2 q~g~~eeAi~~y~kALeldPd~a~a~nLG~~y~~~G~~dEAi~~~~k~~p~~~d---------~lg~~deAi~~yekAL~   72 (338)
                      +.|+|++|+.+++.+++..++......|+.+|.+.|+++++...++.  |+...         ..|.|++|+.+|.++  
T Consensus        73 ~~g~~EeAi~yl~~ark~~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~--pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a--  148 (449)
T 1b89_A           73 TSGNWEELVKYLQMARKKARESYVETELIFALAKTNRLAELEEFING--PNNAHIQQVGDRCYDEKMYDAAKLLYNNV--  148 (449)
T ss_dssp             ------------------------------------CHHHHTTTTTC--C----------------CTTTHHHHHHHT--
T ss_pred             hCCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHhCCHHHHHHHHcC--CcHHHHHHHHHHHHHcCCHHHHHHHHHHh--
Confidence            46888999998888887543311122666666666666666655544  11111         134555555555544  


Q ss_pred             hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Q 019586           73 MLKDLESEMMNKGGDRVEQSRLFDAFLGSSSI  104 (338)
Q Consensus        73 l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekA  104 (338)
                            ..|..||.++.++|+|++|+++|+++
T Consensus       149 ------~n~~~LA~~L~~Lg~yq~AVea~~KA  174 (449)
T 1b89_A          149 ------SNFGRLASTLVHLGEYQAAVDGARKA  174 (449)
T ss_dssp             ------TCHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred             ------hhHHHHHHHHHHhccHHHHHHHHHHc
Confidence                  24445555555555555555555554

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=97.40  E-value=0.001  Score=51.80  Aligned_cols=50  Identities=18%  Similarity=0.028  Sum_probs=42.3

Q ss_pred             HHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcCCHHHHHHHHHhhCcCCcC
Q 019586            6 YIEAEDAYRRALSIAPDNNKMC-NLGICLMKQGRIGEAKETLRRVKPAVAD   55 (338)
Q Consensus         6 ~eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k~~p~~~d   55 (338)
                      .++|+.++++|++++|++..+. .+|..+...|+|++|+.+|+++....+.
T Consensus        25 ~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~   75 (93)
T 3bee_A           25 TDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP   75 (93)
T ss_dssp             CHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred             CHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence            6899999999999999999977 9999999999997777777774443333

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=97.38  E-value=0.00099  Score=54.67  Aligned_cols=79  Identities=14%  Similarity=0.122  Sum_probs=63.1

Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHH----cCCHHHHHHHHHhh-CcCCcC--------------CCCCHHHH
Q 019586            4 NNYIEAEDAYRRALSIAPDNNKMC-NLGICLMK----QGRIGEAKETLRRV-KPAVAD--------------GPRGVDSH   63 (338)
Q Consensus         4 g~~eeAi~~y~kALeldPd~a~a~-nLG~~y~~----~G~~dEAi~~~~k~-~p~~~d--------------~lg~~deA   63 (338)
                      +.+++|+.+|++|.+.  .++.++ +||.+|..    .+++++|+.+|+++ ...++.              ..+++++|
T Consensus        39 ~~~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A  116 (138)
T 1klx_A           39 INKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQA  116 (138)
T ss_dssp             SCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHH
T ss_pred             CCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHCCCCCCcCHHHH
Confidence            4678899999999987  577766 99999999    89999999999993 333333              26799999


Q ss_pred             HHHHHHHHHhCCCCHHHHHHHHH
Q 019586           64 LKAYERAQQMLKDLESEMMNKGG   86 (338)
Q Consensus        64 i~~yekAL~l~Pd~~~a~~nLG~   86 (338)
                      +.+|++|.+.  .++.+..+|+.
T Consensus       117 ~~~~~~Aa~~--g~~~A~~~l~~  137 (138)
T 1klx_A          117 VKTFEKACRL--GSEDACGILNN  137 (138)
T ss_dssp             HHHHHHHHHT--TCHHHHHHC--
T ss_pred             HHHHHHHHHC--CCHHHHHHHhh
Confidence            9999999997  46777776654

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=97.34  E-value=0.00093  Score=55.90  Aligned_cols=90  Identities=9%  Similarity=0.098  Sum_probs=72.9

Q ss_pred             HHHHHHHHHHHHHhCCCCHHH-HHHHHHHHHcCCHHHHHHHHHhhCcCCcCCCCCHHHHHHHHHHHHHhC-C-CCHHHHH
Q 019586            6 YIEAEDAYRRALSIAPDNNKM-CNLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQML-K-DLESEMM   82 (338)
Q Consensus         6 ~eeAi~~y~kALeldPd~a~a-~nLG~~y~~~G~~dEAi~~~~k~~p~~~d~lg~~deAi~~yekAL~l~-P-d~~~a~~   82 (338)
                      ...++..|.+++..++...+. +++|+++....+...-                  .+++..++..++-. | ..-+.+|
T Consensus        17 l~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~------------------~~GI~lLe~l~~~~~p~~~Rd~lY   78 (126)
T 1nzn_A           17 LLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDI------------------RKGIVLLEELLPKGSKEEQRDYVF   78 (126)
T ss_dssp             HHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHH------------------HHHHHHHHHHTTTSCHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHH------------------HHHHHHHHHHHhcCCcchHHHHHH
Confidence            456778888888888777774 4999999998877541                  45666666666655 4 3458899


Q ss_pred             HHHHHHHHCCCHHHHHHHHHHHHccCCCCcc
Q 019586           83 NKGGDRVEQSRLFDAFLGSSSIWQPQPCKDH  113 (338)
Q Consensus        83 nLG~~l~~lGr~~eAi~~yekALkl~P~~~~  113 (338)
                      .||..++++|+|.+|..+++..|+++|.+.+
T Consensus        79 ~LAvg~yklg~Y~~A~~~~~~lL~~eP~n~Q  109 (126)
T 1nzn_A           79 YLAVGNYRLKEYEKALKYVRGLLQTEPQNNQ  109 (126)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHhCCCCHH
Confidence            9999999999999999999999999999977

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=97.12  E-value=0.0015  Score=63.97  Aligned_cols=129  Identities=12%  Similarity=0.078  Sum_probs=90.6

Q ss_pred             HHHHHhCCCCHHHH---HHHHHHHHcCC---HHHHHHHHHh---hCcCCcCC-------------C--CC--HHHHH-HH
Q 019586           14 RRALSIAPDNNKMC---NLGICLMKQGR---IGEAKETLRR---VKPAVADG-------------P--RG--VDSHL-KA   66 (338)
Q Consensus        14 ~kALeldPd~a~a~---nLG~~y~~~G~---~dEAi~~~~k---~~p~~~d~-------------l--g~--~deAi-~~   66 (338)
                      +++....|.+..+|   -.|..|...+.   +.+|+.+|++   +.|.++.+             .  ..  .-+++ ..
T Consensus       184 ~r~~~~~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a  263 (372)
T 3ly7_A          184 ETLQKILPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTE  263 (372)
T ss_dssp             HHHHHHSCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHH
T ss_pred             HHHhccCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHH
Confidence            34455567776655   66777766554   5899999999   45555431             0  11  11111 12


Q ss_pred             HH--HHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCcc--cccchhhhcCccHHHHHhhhhcccCCChh
Q 019586           67 YE--RAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDH--ILPTTNAIKTRDDFADENIDSNVDVNPIV  142 (338)
Q Consensus        67 ye--kAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~--~l~~l~~~~~~~~~A~e~~~~al~~~P~~  142 (338)
                      ++  .++..+|..+.+|..+|.++...|++++|+.++++|+.++|....  .++.+....|+.+.|.+.+..++.++|..
T Consensus       264 ~~a~~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~  343 (372)
T 3ly7_A          264 IDNIVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGA  343 (372)
T ss_dssp             HHHHHTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSH
T ss_pred             HHHHHhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence            22  233567999999999999999999999999999999999975321  33444678899999999999999989863

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=97.03  E-value=0.00092  Score=66.06  Aligned_cols=74  Identities=12%  Similarity=0.037  Sum_probs=58.4

Q ss_pred             CCCCHHHHHHHHHHHHHh-----CCCCHH----HHHHHHHHHHcCCHHHHHHHHHhhCcCCcCCCCCHHHHHHHHHHHHH
Q 019586            2 QQNNYIEAEDAYRRALSI-----APDNNK----MCNLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQ   72 (338)
Q Consensus         2 q~g~~eeAi~~y~kALel-----dPd~a~----a~nLG~~y~~~G~~dEAi~~~~k~~p~~~d~lg~~deAi~~yekAL~   72 (338)
                      .+|+|++|+.+|++++++     .|+++.    ++|||.+|..+|++++|+.+|++              |+..+++.+ 
T Consensus       341 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~--------------Al~i~~~~l-  405 (429)
T 3qwp_A          341 NLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRL--------------AFDIMRVTH-  405 (429)
T ss_dssp             HHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHH--------------HHHHHHHHT-
T ss_pred             hhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHH--------------HHHHHHHhc-
Confidence            369999999999999986     477777    22999999999999999999855              777777764 


Q ss_pred             hCCCCH---HHHHHHHHHHHHC
Q 019586           73 MLKDLE---SEMMNKGGDRVEQ   91 (338)
Q Consensus        73 l~Pd~~---~a~~nLG~~l~~l   91 (338)
                       .|+++   ..+.+|+.++.++
T Consensus       406 -G~~Hp~~~~~~~~l~~~~~e~  426 (429)
T 3qwp_A          406 -GREHSLIEDLILLLEECDANI  426 (429)
T ss_dssp             -CTTSHHHHHHHHHHHHHHHHH
T ss_pred             -CCCChHHHHHHHHHHHHHHHH
Confidence             46666   5567777776553

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=96.91  E-value=0.00057  Score=67.85  Aligned_cols=81  Identities=11%  Similarity=-0.015  Sum_probs=60.3

Q ss_pred             CCCCHHHHHHHHHHHHHh-----CCCCH---HHHHHHHHHHHHCCCHHHHHHHHHHHHcc-----CCCCcc------ccc
Q 019586           56 GPRGVDSHLKAYERAQQM-----LKDLE---SEMMNKGGDRVEQSRLFDAFLGSSSIWQP-----QPCKDH------ILP  116 (338)
Q Consensus        56 ~lg~~deAi~~yekAL~l-----~Pd~~---~a~~nLG~~l~~lGr~~eAi~~yekALkl-----~P~~~~------~l~  116 (338)
                      ..|+|++|+..|++++++     .|+++   .++.+||.+|..+|+|++|+.+|+++|++     -|+++.      .++
T Consensus       310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa  389 (433)
T 3qww_A          310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG  389 (433)
T ss_dssp             TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred             hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence            357889999999999886     35554   77899999999999999999999999976     445554      223


Q ss_pred             chhhhcCccHHHHHhhhhcc
Q 019586          117 TTNAIKTRDDFADENIDSNV  136 (338)
Q Consensus       117 ~l~~~~~~~~~A~e~~~~al  136 (338)
                      .+...+|+.+.|...+..++
T Consensus       390 ~~~~~qg~~~eA~~~~~~Al  409 (433)
T 3qww_A          390 RLYMGLENKAAGEKALKKAI  409 (433)
T ss_dssp             HHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHhccCHHHHHHHHHHHH
Confidence            33456666666666666654

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=96.88  E-value=0.0028  Score=66.35  Aligned_cols=13  Identities=31%  Similarity=0.547  Sum_probs=0.0

Q ss_pred             cCCCCchhHHHHH
Q 019586          278 YLLPDDEDFEEAI  290 (338)
Q Consensus       278 ~~~~~~~~~~~~~  290 (338)
                      -+||-...|-.|+
T Consensus       650 ~~~~~~~~~~~~~  662 (679)
T 4e6h_A          650 KVLPKRQYFKVTI  662 (679)
T ss_dssp             -------------
T ss_pred             HhCcchhhhcccc
Confidence            3599999998844

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=96.67  E-value=0.0057  Score=64.03  Aligned_cols=100  Identities=6%  Similarity=-0.122  Sum_probs=75.7

Q ss_pred             HHHHHHHHHHHhCCCCHHHH-HHHHHHHHcCCHHHHH-HHHHhhCcCCcC-------------CCCCHHHHHHHHHHHHH
Q 019586            8 EAEDAYRRALSIAPDNNKMC-NLGICLMKQGRIGEAK-ETLRRVKPAVAD-------------GPRGVDSHLKAYERAQQ   72 (338)
Q Consensus         8 eAi~~y~kALeldPd~a~a~-nLG~~y~~~G~~dEAi-~~~~k~~p~~~d-------------~lg~~deAi~~yekAL~   72 (338)
                      .....|++||...|.+++.| .++..+...|+.++|+ ..|+++....|.             ..|+++.|...|++++.
T Consensus       327 Rv~~~Ye~aL~~~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~  406 (679)
T 4e6h_A          327 RMTYVYMQAAQHVCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCID  406 (679)
T ss_dssp             HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence            35577888888888888877 8888888888888886 888884333332             26788888888888887


Q ss_pred             hC-----------CC-----------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHcc
Q 019586           73 ML-----------KD-----------LESEMMNKGGDRVEQSRLFDAFLGSSSIWQP  107 (338)
Q Consensus        73 l~-----------Pd-----------~~~a~~nLG~~l~~lGr~~eAi~~yekALkl  107 (338)
                      .-           |.           ...+|..++......|..+.|...|.+|++.
T Consensus       407 ~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~  463 (679)
T 4e6h_A          407 RIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRL  463 (679)
T ss_dssp             HHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHT
T ss_pred             HHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            52           42           3456777777777888888888888888876

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=96.41  E-value=0.0067  Score=52.19  Aligned_cols=62  Identities=8%  Similarity=-0.065  Sum_probs=49.9

Q ss_pred             CHHHHHHHHHHHHHhC-C-CCHH-HHHHHHHHHHcCCHHHHHHHHHhhCcCCcCCCCCHHHHHHHHHHHHHhCCCCHHHH
Q 019586            5 NYIEAEDAYRRALSIA-P-DNNK-MCNLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDLESEM   81 (338)
Q Consensus         5 ~~eeAi~~y~kALeld-P-d~a~-a~nLG~~y~~~G~~dEAi~~~~k~~p~~~d~lg~~deAi~~yekAL~l~Pd~~~a~   81 (338)
                      ++++|+..++..++.+ | +..+ .|+||..|+++|+|                     ++|..+++++++++|++..+.
T Consensus        50 ~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y---------------------~~A~~y~~~lL~ieP~n~QA~  108 (152)
T 1pc2_A           50 DIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEY---------------------EKALKYVRGLLQTEPQNNQAK  108 (152)
T ss_dssp             HHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCH---------------------HHHHHHHHHHHHHCTTCHHHH
T ss_pred             HHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCH---------------------HHHHHHHHHHHhcCCCCHHHH
Confidence            5789999999999998 7 3445 55999999999999                     556666677999999999887


Q ss_pred             HHHHHH
Q 019586           82 MNKGGD   87 (338)
Q Consensus        82 ~nLG~~   87 (338)
                      .-+-.+
T Consensus       109 ~Lk~~i  114 (152)
T 1pc2_A          109 ELERLI  114 (152)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            654443

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=96.31  E-value=0.045  Score=46.63  Aligned_cols=70  Identities=7%  Similarity=-0.031  Sum_probs=61.6

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHhhCcCCcCCCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHH
Q 019586           26 MCNLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKD-LESEMMNKGGDRVEQSRLFDAFLGSSSI  104 (338)
Q Consensus        26 a~nLG~~y~~~G~~dEAi~~~~k~~p~~~d~lg~~deAi~~yekAL~l~Pd-~~~a~~nLG~~l~~lGr~~eAi~~yekA  104 (338)
                      .+++|+++.+..+-+.-                  .+++..++..++-.|. .-+.+|.|+..++++|+|.+|..+.+..
T Consensus        42 ~F~YAw~Lv~S~~~~di------------------~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~l  103 (144)
T 1y8m_A           42 RFNYAWGLIKSTDVNDE------------------RLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTL  103 (144)
T ss_dssp             HHHHHHHHHHSSSHHHH------------------HHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCHHHH------------------HHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence            55999999999887442                  6788889999998885 4588899999999999999999999999


Q ss_pred             HccCCCCcc
Q 019586          105 WQPQPCKDH  113 (338)
Q Consensus       105 Lkl~P~~~~  113 (338)
                      |+++|++.+
T Consensus       104 L~~eP~n~Q  112 (144)
T 1y8m_A          104 FEHERNNKQ  112 (144)
T ss_dssp             HHTCCCCHH
T ss_pred             HhcCCCcHH
Confidence            999999977

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=96.21  E-value=0.052  Score=45.74  Aligned_cols=70  Identities=7%  Similarity=-0.040  Sum_probs=61.7

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHhhCcCCcCCCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHH
Q 019586           26 MCNLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKD-LESEMMNKGGDRVEQSRLFDAFLGSSSI  104 (338)
Q Consensus        26 a~nLG~~y~~~G~~dEAi~~~~k~~p~~~d~lg~~deAi~~yekAL~l~Pd-~~~a~~nLG~~l~~lGr~~eAi~~yekA  104 (338)
                      -+++|+++.+..+.+.                  ..+++..++..++..|. .-+.++.|+..++++|+|.+|..+.+..
T Consensus        43 ~F~yAw~Lv~S~~~~d------------------~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~l  104 (134)
T 3o48_A           43 RFNYAWGLIKSTDVND------------------ERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTL  104 (134)
T ss_dssp             HHHHHHHHHHSSCHHH------------------HHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCHHH------------------HHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence            5599999999887743                  26788899999998884 4688999999999999999999999999


Q ss_pred             HccCCCCcc
Q 019586          105 WQPQPCKDH  113 (338)
Q Consensus       105 Lkl~P~~~~  113 (338)
                      |++.|++.+
T Consensus       105 L~~eP~N~Q  113 (134)
T 3o48_A          105 FEHERNNKQ  113 (134)
T ss_dssp             HTTCTTCHH
T ss_pred             HhhCCCCHH
Confidence            999999977

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=95.34  E-value=0.039  Score=48.16  Aligned_cols=96  Identities=8%  Similarity=-0.091  Sum_probs=62.7

Q ss_pred             CCCHHHHHHHHHHHHHhC---CCC--HH-----HHHHHHHHHHcCCHHHHHHHHHhhC------cCCcCC---CCCHHHH
Q 019586            3 QNNYIEAEDAYRRALSIA---PDN--NK-----MCNLGICLMKQGRIGEAKETLRRVK------PAVADG---PRGVDSH   63 (338)
Q Consensus         3 ~g~~eeAi~~y~kALeld---Pd~--a~-----a~nLG~~y~~~G~~dEAi~~~~k~~------p~~~d~---lg~~deA   63 (338)
                      .|.|+-|+.....++.+.   |+.  +.     ...+|.++..+|+|..|...|+++.      +..+..   .+ .   
T Consensus        33 ~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~~~~-~---  108 (167)
T 3ffl_A           33 AGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRPSTG-N---  108 (167)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC----------------
T ss_pred             hhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCcccccc-c---
Confidence            578999999999988774   332  22     2399999999999999999998821      212110   00 0   


Q ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Q 019586           64 LKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSS  103 (338)
Q Consensus        64 i~~yekAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yek  103 (338)
                      ...+..... .+...+..+.++.||.++|++.+|+..++.
T Consensus       109 ~ss~p~s~~-~~~e~Elkykia~C~~~l~~~~~Ai~~Le~  147 (167)
T 3ffl_A          109 SASTPQSQC-LPSEIEVKYKLAECYTVLKQDKDAIAILDG  147 (167)
T ss_dssp             --------C-CCCHHHHHHHHHHHHHHTTCHHHHHHHHHT
T ss_pred             cCCCccccc-ccchHHHHHHHHHHHHHHCCHHHHHHHHhc
Confidence            000000111 133457889999999999999999998775

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=95.13  E-value=0.2  Score=50.07  Aligned_cols=102  Identities=8%  Similarity=0.040  Sum_probs=81.6

Q ss_pred             CCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHcCCHHHHHHHHHhhCc--CCcC------------CCCCHHHHHHHH
Q 019586            4 NNYIEAEDAYRRALSI--APDNNKMCNLGICLMKQGRIGEAKETLRRVKP--AVAD------------GPRGVDSHLKAY   67 (338)
Q Consensus         4 g~~eeAi~~y~kALel--dPd~a~a~nLG~~y~~~G~~dEAi~~~~k~~p--~~~d------------~lg~~deAi~~y   67 (338)
                      +.+++|...|++....  .|+...+..+-.+|.+.|++++|...|++...  ..|+            ..|++++|...|
T Consensus        84 ~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~  163 (501)
T 4g26_A           84 PGLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVD  163 (501)
T ss_dssp             HHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHH
Confidence            4578899999988775  46555455888899999999999999998322  2233            278999999999


Q ss_pred             HHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHc
Q 019586           68 ERAQQML--KDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQ  106 (338)
Q Consensus        68 ekAL~l~--Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALk  106 (338)
                      ++..+..  | +...|..|-.+|.+.|++++|...|++...
T Consensus       164 ~~M~~~G~~P-d~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~  203 (501)
T 4g26_A          164 AHMVESEVVP-EEPELAALLKVSMDTKNADKVYKTLQRLRD  203 (501)
T ss_dssp             HHHHHTTCCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHhcCCCC-CHHHHHHHHHHHhhCCCHHHHHHHHHHHHH
Confidence            9988753  4 567888999999999999999999987643

>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A

Probab=94.91  E-value=0.041  Score=47.58  Aligned_cols=98  Identities=11%  Similarity=0.003  Sum_probs=73.9

Q ss_pred             HhCCCCHHHH-HHHHHHHHcCCH------HHHHHHHHhhCcCCc---CC-----------------CCCHHHHHHHHHHH
Q 019586           18 SIAPDNNKMC-NLGICLMKQGRI------GEAKETLRRVKPAVA---DG-----------------PRGVDSHLKAYERA   70 (338)
Q Consensus        18 eldPd~a~a~-nLG~~y~~~G~~------dEAi~~~~k~~p~~~---d~-----------------lg~~deAi~~yekA   70 (338)
                      -+.|.+.+.| ++...+-+.|+.      ++-+..|+++....|   ..                 .++.++|...|+.|
T Consensus         7 ~~~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a   86 (161)
T 4h7y_A            7 MMMANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMA   86 (161)
T ss_dssp             ---CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHH
T ss_pred             eeCCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence            3567777755 666666666776      666777777221111   11                 34788999999999


Q ss_pred             HHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCcccc
Q 019586           71 QQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDHIL  115 (338)
Q Consensus        71 L~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~~l  115 (338)
                      +.+...++..|...+..-..+|++..|...+.+|+.+.|...+++
T Consensus        87 ~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~l  131 (161)
T 4h7y_A           87 RANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEML  131 (161)
T ss_dssp             HHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHHH
T ss_pred             HHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHHH
Confidence            999999999999999999999999999999999999998866643

>2llv_A Heat shock protein STI1; DP domain, alpha helix, chaperone; NMR {Saccharomyces cerevisiae}

Probab=94.39  E-value=0.011  Score=44.27  Aligned_cols=60  Identities=12%  Similarity=0.126  Sum_probs=53.1

Q ss_pred             cCCChhhhhhhhhhhhcchHHHHHHhHhHHHHhhchhhhhhHh-hhhhhhhhhhhcc-ccccCC
Q 019586          137 DVNPIVLSKHRSVKKLFPTANAIKTQENFADENINANIVVNQT-VLAQQRGVQQLAP-FGNSWN  198 (338)
Q Consensus       137 ~~~P~~~~K~~~~~kl~~~~~ai~~~~~~~e~y~nlg~~~~~~-~~~d~r~~~~~~~-~~~~~~  198 (338)
                      +.+|....|....+++..+.+++++...+.+...|+..+.  . ++.|||++++|++ +|++++
T Consensus        10 f~~p~~~~kl~~dP~t~~~~~DP~~~~~lq~i~~NP~~i~--~~~~~dPrv~~~l~~L~g~~~~   71 (71)
T 2llv_A           10 FADPNLIENLKKNPKTSEMMKDPQLVAKLIGYKQNPQAIG--QDLFTDPRLMTIMATLMGVDLN   71 (71)
T ss_dssp             HHSSSCHHHHHHSSTTHHHHHSCTHHHHHHHHHHSCTTHH--HHTTTCHHHHHHHHHHHTTTTC
T ss_pred             ccChHHHHHHHcChHHHHHhcCHHHHHHHHHHHHCHHHHH--HHHhhCcHHHHHHHHHHcCCCC
Confidence            3367888888888999999999999999999999999998  6 8999999999999 887764

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=93.84  E-value=0.41  Score=47.54  Aligned_cols=106  Identities=11%  Similarity=0.004  Sum_probs=58.9

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcCCHHHHHH-HHHhh--Cc---------CCcC-----------CC
Q 019586            2 QQNNYIEAEDAYRRALSIAPDNNKMC-NLGICLMKQGRIGEAKE-TLRRV--KP---------AVAD-----------GP   57 (338)
Q Consensus         2 q~g~~eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G~~dEAi~-~~~k~--~p---------~~~d-----------~l   57 (338)
                      +.|+.++|...|++|+.. |.....+ .++... ..+   +... .+.+.  ..         ..+.           ..
T Consensus       225 ~~~~~~~ar~i~erAi~~-P~~~~l~~~y~~~~-e~~---~~~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~  299 (493)
T 2uy1_A          225 GIGQKEKAKKVVERGIEM-SDGMFLSLYYGLVM-DEE---AVYGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKK  299 (493)
T ss_dssp             HTTCHHHHHHHHHHHHHH-CCSSHHHHHHHHHT-TCT---HHHHHHHHHTC----------CHHHHHHHHHHHHHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHhC-CCcHHHHHHHHhhc-chh---HHHHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHc
Confidence            357889999999999999 9876544 333221 011   1100 11110  00         0000           13


Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC-CHHHHHHHHHHHHccCCCCcc
Q 019586           58 RGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQS-RLFDAFLGSSSIWQPQPCKDH  113 (338)
Q Consensus        58 g~~deAi~~yekAL~l~Pd~~~a~~nLG~~l~~lG-r~~eAi~~yekALkl~P~~~~  113 (338)
                      ++.+.|...|++| +..+.....|...+.+....+ +++.|...|+.+++.-|+.+.
T Consensus       300 ~~~~~AR~i~~~A-~~~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~  355 (493)
T 2uy1_A          300 RGLELFRKLFIEL-GNEGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTL  355 (493)
T ss_dssp             HCHHHHHHHHHHH-TTSCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHH
T ss_pred             CCHHHHHHHHHHh-hCCCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHH
Confidence            4567777778777 332234455555555555445 477788888888777776654

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=93.42  E-value=0.36  Score=47.97  Aligned_cols=94  Identities=14%  Similarity=-0.002  Sum_probs=67.2

Q ss_pred             HHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcCCHHHHHHHHHhhCcCCcCCCC---------CHHHHHHHHHHHHHh---
Q 019586            7 IEAEDAYRRALSIAPDNNKMC-NLGICLMKQGRIGEAKETLRRVKPAVADGPR---------GVDSHLKAYERAQQM---   73 (338)
Q Consensus         7 eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k~~p~~~d~lg---------~~deAi~~yekAL~l---   73 (338)
                      +.....|++++...|.....| .++..+...|+.++|...|+++... |....         +.++.   +++..+.   
T Consensus       196 ~Rv~~~ye~al~~~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~~l~~~y~~~~e~~~~---~~~l~~~~~~  271 (493)
T 2uy1_A          196 SRMHFIHNYILDSFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGMFLSLYYGLVMDEEAV---YGDLKRKYSM  271 (493)
T ss_dssp             HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSSHHHHHHHHHTTCTHH---HHHHHHHTC-
T ss_pred             HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcHHHHHHHHhhcchhHH---HHHHHHHHHh
Confidence            456789999999999999977 9999999999999999999994444 44210         11111   2222211   


Q ss_pred             ----------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Q 019586           74 ----------LKDLESEMMNKGGDRVEQSRLFDAFLGSSSI  104 (338)
Q Consensus        74 ----------~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekA  104 (338)
                                .+.....|...+..+...|.++.|...|++|
T Consensus       272 ~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A  312 (493)
T 2uy1_A          272 GEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL  312 (493)
T ss_dssp             ---------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred             hccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh
Confidence                      1112356777777777888999999999999

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=93.08  E-value=1  Score=44.99  Aligned_cols=104  Identities=7%  Similarity=-0.006  Sum_probs=61.2

Q ss_pred             CCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHcC---------CHHHHHHHHHhh--CcCCcC------------C
Q 019586            2 QQNNYIEAEDAYRRALSIA--PDNNKMCNLGICLMKQG---------RIGEAKETLRRV--KPAVAD------------G   56 (338)
Q Consensus         2 q~g~~eeAi~~y~kALeld--Pd~a~a~nLG~~y~~~G---------~~dEAi~~~~k~--~p~~~d------------~   56 (338)
                      +.|++++|+.+|++..+..  |+...+..|=.++...+         .+++|...|++.  ....|+            .
T Consensus        38 k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~  117 (501)
T 4g26_A           38 KKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEATFTNGARLAVA  117 (501)
T ss_dssp             TSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHH
T ss_pred             hCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHh
Confidence            4677777777777776653  43332223323333322         356777777662  111222            2


Q ss_pred             CCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHc
Q 019586           57 PRGVDSHLKAYERAQQM--LKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQ  106 (338)
Q Consensus        57 lg~~deAi~~yekAL~l--~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALk  106 (338)
                      .|++++|...|++..+.  .| +...|+.+-..|.+.|++++|...|++..+
T Consensus       118 ~g~~~~A~~l~~~M~~~g~~P-d~~tyn~lI~~~~~~g~~~~A~~l~~~M~~  168 (501)
T 4g26_A          118 KDDPEMAFDMVKQMKAFGIQP-RLRSYGPALFGFCRKGDADKAYEVDAHMVE  168 (501)
T ss_dssp             HTCHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHcCCCC-ccceehHHHHHHHHCCCHHHHHHHHHHHHh
Confidence            56777777777776654  24 456666677777777777777777776554

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=93.00  E-value=0.35  Score=51.29  Aligned_cols=99  Identities=11%  Similarity=0.050  Sum_probs=72.4

Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHH--cC-CHHHHHHHHHh-h----------CcCCcC----------------
Q 019586            6 YIEAEDAYRRALSIAPDNNKMCNLGICLMK--QG-RIGEAKETLRR-V----------KPAVAD----------------   55 (338)
Q Consensus         6 ~eeAi~~y~kALeldPd~a~a~nLG~~y~~--~G-~~dEAi~~~~k-~----------~p~~~d----------------   55 (338)
                      ++.|+..+++..+.+|.....+..+.+...  .+ +=-+|+....+ +          .+.+..                
T Consensus       265 ~~~a~~~le~L~~~~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~LL~~Qa  344 (754)
T 4gns_B          265 VDFTIDYLKGLTKKDPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSARLMNCMSDLLNIQT  344 (754)
T ss_dssp             HHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccccccccCcchHHHHHHH
Confidence            577999999999999987765533333221  11 22234443333 1          111110                


Q ss_pred             ----CCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Q 019586           56 ----GPRGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSI  104 (338)
Q Consensus        56 ----~lg~~deAi~~yekAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekA  104 (338)
                          ..++++-|+.+.++|+...|+.-..|+.|+.+|..+|+|+.|+-.+..+
T Consensus       345 ~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc  397 (754)
T 4gns_B          345 NFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM  397 (754)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred             HHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence                2789999999999999999999999999999999999999999888776

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=92.47  E-value=0.13  Score=49.77  Aligned_cols=50  Identities=10%  Similarity=-0.152  Sum_probs=45.8

Q ss_pred             CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHc
Q 019586           57 PRGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQ  106 (338)
Q Consensus        57 lg~~deAi~~yekAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALk  106 (338)
                      .|++.+|+..+++++..+|-+...|..|-.+|...|+..+|+..|+++.+
T Consensus       184 ~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~  233 (388)
T 2ff4_A          184 CGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKT  233 (388)
T ss_dssp             TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            57789999999999999999999999999999999999999999988643

>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1

Probab=92.15  E-value=1.8  Score=40.47  Aligned_cols=109  Identities=10%  Similarity=0.006  Sum_probs=80.8

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcCCHHHHHHHHHhhCcCCcCCCCCHHHHHHHHHHHHHhC-----
Q 019586            1 MQQNNYIEAEDAYRRALSIAPDNNKMC-NLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQML-----   74 (338)
Q Consensus         1 mq~g~~eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k~~p~~~d~lg~~deAi~~yekAL~l~-----   74 (338)
                      ++.|..++|++.....|+.+|.++... .|-..|+-.|+|+.|...++.+...+|+.    ......|+.+|+-.     
T Consensus         8 l~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~----~~~a~~yr~lI~aE~~R~~   83 (273)
T 1zbp_A            8 LSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEY----LPGASQLRHLVKAAQARKD   83 (273)
T ss_dssp             TTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGG----HHHHHHHHHHHHHHHHHHH
T ss_pred             HhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchh----hHHHHHHHHHHHHHHHHHH
Confidence            357899999999999999999999977 99999999999999999888733333321    33344455554321     


Q ss_pred             ----------CCCHHHH---HHHHHHHHHCCCHHHHHHHHHHHHccCCCCcc
Q 019586           75 ----------KDLESEM---MNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDH  113 (338)
Q Consensus        75 ----------Pd~~~a~---~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~  113 (338)
                                +..+..|   ..-+......|+.++|...-..+++..|..+.
T Consensus        84 vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ap~~~G  135 (273)
T 1zbp_A           84 FAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGF  135 (273)
T ss_dssp             HTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCCE
T ss_pred             HHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCcccCC
Confidence                      1222333   33456677789999999999999999988766

>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1

Probab=91.82  E-value=0.4  Score=48.34  Aligned_cols=54  Identities=6%  Similarity=-0.124  Sum_probs=47.8

Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCcc
Q 019586           60 VDSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDH  113 (338)
Q Consensus        60 ~deAi~~yekAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~  113 (338)
                      +..|..+|.+|+.+.|+.+..|+.||.+....|+.-+|+-+|-+++....-.+.
T Consensus       168 ~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~  221 (497)
T 1ya0_A          168 TSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPA  221 (497)
T ss_dssp             HHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHH
T ss_pred             HHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChh
Confidence            478889999999999999999999999999999999999999999876554443

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=91.48  E-value=1  Score=45.57  Aligned_cols=69  Identities=12%  Similarity=0.039  Sum_probs=44.9

Q ss_pred             CCHHHH-HHHHHHHHcCCHHHHHHHHHhhCcCCcCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHH
Q 019586           22 DNNKMC-NLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLG  100 (338)
Q Consensus        22 d~a~a~-nLG~~y~~~G~~dEAi~~~~k~~p~~~d~lg~~deAi~~yekAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~  100 (338)
                      ++...| ++|..+...|+++.|+.+|.++        ++++.+...|..     ..+.+.+..++......|++..|..+
T Consensus       679 ~~~~~W~~la~~al~~~~~~~A~~~y~~~--------~d~~~l~~l~~~-----~~~~~~~~~~~~~a~~~~~~~~A~~~  745 (814)
T 3mkq_A          679 SAEMKWRALGDASLQRFNFKLAIEAFTNA--------HDLESLFLLHSS-----FNNKEGLVTLAKDAETTGKFNLAFNA  745 (814)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHH--------TCHHHHHHHHHH-----TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             CcHhHHHHHHHHHHHcCCHHHHHHHHHHc--------cChhhhHHHHHH-----cCCHHHHHHHHHHHHHcCchHHHHHH
Confidence            455666 9999999999999999999884        455555444432     33455555566666666666666555


Q ss_pred             HHH
Q 019586          101 SSS  103 (338)
Q Consensus       101 yek  103 (338)
                      |.+
T Consensus       746 ~~~  748 (814)
T 3mkq_A          746 YWI  748 (814)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            443

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=91.09  E-value=0.49  Score=39.26  Aligned_cols=60  Identities=8%  Similarity=-0.043  Sum_probs=44.5

Q ss_pred             HHHHHHHHHHHHHhC-CCCHH--HHHHHHHHHHcCCHHHHHHHHHhhCcCCcCCCCCHHHHHHHHHHHHHhCCCCHHHHH
Q 019586            6 YIEAEDAYRRALSIA-PDNNK--MCNLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDLESEMM   82 (338)
Q Consensus         6 ~eeAi~~y~kALeld-Pd~a~--a~nLG~~y~~~G~~dEAi~~~~k~~p~~~d~lg~~deAi~~yekAL~l~Pd~~~a~~   82 (338)
                      ..++|.+++..+..+ |....  .|.||..+.++|+|                     ++|..+++.+|++.|++..+..
T Consensus        54 ~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y---------------------~~A~~~~~~lL~~eP~n~QA~~  112 (126)
T 1nzn_A           54 IRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEY---------------------EKALKYVRGLLQTEPQNNQAKE  112 (126)
T ss_dssp             HHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCH---------------------HHHHHHHHHHHHHCTTCHHHHH
T ss_pred             HHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhH---------------------HHHHHHHHHHHHhCCCCHHHHH
Confidence            356888998888876 42222  55999999999999                     5556666669999999988865


Q ss_pred             HHHH
Q 019586           83 NKGG   86 (338)
Q Consensus        83 nLG~   86 (338)
                      -...
T Consensus       113 Lk~~  116 (126)
T 1nzn_A          113 LERL  116 (126)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            5443

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=90.44  E-value=0.89  Score=38.15  Aligned_cols=61  Identities=10%  Similarity=-0.038  Sum_probs=46.7

Q ss_pred             CHHHHHHHHHHHHHhCCCCHH--HHHHHHHHHHcCCHHHHHHHHHhhCcCCcCCCCCHHHHHHHHHHHHHhCCCCHHHHH
Q 019586            5 NYIEAEDAYRRALSIAPDNNK--MCNLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDLESEMM   82 (338)
Q Consensus         5 ~~eeAi~~y~kALeldPd~a~--a~nLG~~y~~~G~~dEAi~~~~k~~p~~~d~lg~~deAi~~yekAL~l~Pd~~~a~~   82 (338)
                      +..++|.+++..+..+|....  .|.||..+.++|+|                     ++|..+.+.++++.|++..+..
T Consensus        58 d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY---------------------~~Ar~y~d~lL~~eP~N~QA~~  116 (134)
T 3o48_A           58 DERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEY---------------------SMAKRYVDTLFEHERNNKQVGA  116 (134)
T ss_dssp             HHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCH---------------------HHHHHHHHHHHTTCTTCHHHHH
T ss_pred             HHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhH---------------------HHHHHHHHHHHhhCCCCHHHHH
Confidence            456899999999998885544  55999999999999                     5555566668888888887765


Q ss_pred             HHHH
Q 019586           83 NKGG   86 (338)
Q Consensus        83 nLG~   86 (338)
                      -...
T Consensus       117 Lk~~  120 (134)
T 3o48_A          117 LKSM  120 (134)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            4433

>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}

Probab=90.24  E-value=3.1  Score=36.31  Aligned_cols=93  Identities=13%  Similarity=-0.068  Sum_probs=55.7

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcCCHHHHHHHHHhhCcCCcC-----CCCCHHHHHHHHHHHHHhCC
Q 019586            2 QQNNYIEAEDAYRRALSIAPDNNKMC-NLGICLMKQGRIGEAKETLRRVKPAVAD-----GPRGVDSHLKAYERAQQMLK   75 (338)
Q Consensus         2 q~g~~eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k~~p~~~d-----~lg~~deAi~~yekAL~l~P   75 (338)
                      +.|+++.|.+..+..     ++...| .||.....+|+++-|+.+|+++.....-     ..|+.+.-....+.| ....
T Consensus        17 ~lg~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D~~~L~~Ly~~tg~~e~L~kla~iA-~~~g   90 (177)
T 3mkq_B           17 EYGNLDAALDEAKKL-----NDSITWERLIQEALAQGNASLAEMIYQTQHSFDKLSFLYLVTGDVNKLSKMQNIA-QTRE   90 (177)
T ss_dssp             HTTCHHHHHHHHHHH-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHHHHH-HHTT
T ss_pred             hcCCHHHHHHHHHHh-----CCHHHHHHHHHHHHHcCChHHHHHHHHHhCCHHHHHHHHHHhCCHHHHHHHHHHH-HHCc
Confidence            478899998886654     455666 9999999999999999999993211100     112222212222222 1122


Q ss_pred             CCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Q 019586           76 DLESEMMNKGGDRVEQSRLFDAFLGSSSI  104 (338)
Q Consensus        76 d~~~a~~nLG~~l~~lGr~~eAi~~yekA  104 (338)
                      ++    +....+++.+|+++++++.|.+.
T Consensus        91 ~~----n~af~~~l~lGdv~~~i~lL~~~  115 (177)
T 3mkq_B           91 DF----GSMLLNTFYNNSTKERSSIFAEG  115 (177)
T ss_dssp             CH----HHHHHHHHHHTCHHHHHHHHHHT
T ss_pred             cH----HHHHHHHHHcCCHHHHHHHHHHC
Confidence            21    22233567778888888777654

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=90.13  E-value=1.4  Score=37.41  Aligned_cols=61  Identities=10%  Similarity=-0.038  Sum_probs=47.8

Q ss_pred             CHHHHHHHHHHHHHhCCCCHH--HHHHHHHHHHcCCHHHHHHHHHhhCcCCcCCCCCHHHHHHHHHHHHHhCCCCHHHHH
Q 019586            5 NYIEAEDAYRRALSIAPDNNK--MCNLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDLESEMM   82 (338)
Q Consensus         5 ~~eeAi~~y~kALeldPd~a~--a~nLG~~y~~~G~~dEAi~~~~k~~p~~~d~lg~~deAi~~yekAL~l~Pd~~~a~~   82 (338)
                      +..++|.+++..+...|....  .|.||..+.++|+|                     ++|..+.+.+|++.|++..+..
T Consensus        57 di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y---------------------~~Ar~y~d~lL~~eP~n~QA~~  115 (144)
T 1y8m_A           57 DERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEY---------------------SMAKRYVDTLFEHERNNKQVGA  115 (144)
T ss_dssp             HHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCH---------------------HHHHHHHHHHHHTCCCCHHHHH
T ss_pred             HHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhH---------------------HHHHHHHHHHHhcCCCcHHHHH
Confidence            356899999999998886655  55999999999999                     5556666679999999987765


Q ss_pred             HHHH
Q 019586           83 NKGG   86 (338)
Q Consensus        83 nLG~   86 (338)
                      -...
T Consensus       116 Lk~~  119 (144)
T 1y8m_A          116 LKSM  119 (144)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            4433

>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1

Probab=89.70  E-value=1  Score=45.33  Aligned_cols=45  Identities=27%  Similarity=0.273  Sum_probs=40.1

Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcCCHHHHHHHHHh
Q 019586            4 NNYIEAEDAYRRALSIAPDNNKMC-NLGICLMKQGRIGEAKETLRR   48 (338)
Q Consensus         4 g~~eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k   48 (338)
                      ..+..|..+|.+|+.+.|+++..| .||.+....|+.-+|+.+|.+
T Consensus       166 ~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~r  211 (497)
T 1ya0_A          166 NQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCR  211 (497)
T ss_dssp             TCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHH
Confidence            456889999999999999999977 999999999999888888877

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=86.53  E-value=0.57  Score=47.52  Aligned_cols=73  Identities=11%  Similarity=-0.057  Sum_probs=53.3

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHhhCcCC--cCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Q 019586           27 CNLGICLMKQGRIGEAKETLRRVKPAV--ADGPRGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSI  104 (338)
Q Consensus        27 ~nLG~~y~~~G~~dEAi~~~~k~~p~~--~d~lg~~deAi~~yekAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekA  104 (338)
                      ..+...+...|.+++|+...+.....+  +-..|++++|.+..+     .-+....|..+|..+.+.|+++.|+.||.++
T Consensus       633 ~~~~~~l~~~~~~~~a~~~~~~~~~~f~~~l~~~~~~~A~~~~~-----~~~~~~~W~~la~~al~~~~~~~A~~~y~~~  707 (814)
T 3mkq_A          633 TKIARFLEGQEYYEEALNISPDQDQKFELALKVGQLTLARDLLT-----DESAEMKWRALGDASLQRFNFKLAIEAFTNA  707 (814)
T ss_dssp             HHHHHHHHHTTCHHHHHHHCCCHHHHHHHHHHHTCHHHHHHHHT-----TCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCChHHheecCCCcchheehhhhcCCHHHHHHHHH-----hhCcHhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence            367777888898888887653311100  113567777776643     2457899999999999999999999999986

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=85.67  E-value=0.74  Score=40.02  Aligned_cols=52  Identities=6%  Similarity=-0.099  Sum_probs=38.8

Q ss_pred             CCHHHHHHHHHHHHHhC---CCC------HHHHHHHHHHHHHCCCHHHHHHHHHHHHccCC
Q 019586           58 RGVDSHLKAYERAQQML---KDL------ESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQP  109 (338)
Q Consensus        58 g~~deAi~~yekAL~l~---Pd~------~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P  109 (338)
                      +.|+.|+.....++.+.   |+.      ..+++.+|.+++..|+|..|...|+++|++.-
T Consensus        34 ~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k   94 (167)
T 3ffl_A           34 GLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKK   94 (167)
T ss_dssp             TCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHH
Confidence            45566666666655554   332      24788999999999999999999999987643

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=83.56  E-value=1.4  Score=46.77  Aligned_cols=47  Identities=19%  Similarity=0.223  Sum_probs=43.1

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcCCHHHHHHHHHh
Q 019586            2 QQNNYIEAEDAYRRALSIAPDNNKMC-NLGICLMKQGRIGEAKETLRR   48 (338)
Q Consensus         2 q~g~~eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k   48 (338)
                      .+|+|+-|+.+.++|+..-|+....| .|+.||..+|+|+.|+-.+.-
T Consensus       349 ~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNS  396 (754)
T 4gns_B          349 NRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINS  396 (754)
T ss_dssp             HTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             ccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhc
Confidence            46899999999999999999998866 999999999999999887766

>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1

Probab=82.70  E-value=2.2  Score=39.76  Aligned_cols=57  Identities=9%  Similarity=-0.253  Sum_probs=53.0

Q ss_pred             CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCcc
Q 019586           57 PRGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDH  113 (338)
Q Consensus        57 lg~~deAi~~yekAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~  113 (338)
                      .|..++|+......|+-+|.+......|-..|.-.|+++.|...++.+.+++|....
T Consensus        10 ~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~   66 (273)
T 1zbp_A           10 EGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLP   66 (273)
T ss_dssp             TTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHH
T ss_pred             CCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhH
Confidence            467799999999999999999999999999999999999999999999999998654

>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}

Probab=82.34  E-value=3.3  Score=36.80  Aligned_cols=85  Identities=11%  Similarity=-0.014  Sum_probs=60.7

Q ss_pred             HHHHHHHHcCCHHHHHHHHHhhCcCCcC--------CCCCHHHHHHHHHHHH--Hh---------------CCCCHHHH-
Q 019586           28 NLGICLMKQGRIGEAKETLRRVKPAVAD--------GPRGVDSHLKAYERAQ--QM---------------LKDLESEM-   81 (338)
Q Consensus        28 nLG~~y~~~G~~dEAi~~~~k~~p~~~d--------~lg~~deAi~~yekAL--~l---------------~Pd~~~a~-   81 (338)
                      -++.++...|.|..|+-.+..++...+.        .+.++..|+.+++..+  .+               +|.+.+.. 
T Consensus        38 L~~I~LyyngEY~R~Lf~L~~lNT~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffvd~~DkEfFy  117 (242)
T 3kae_A           38 LMSIVLYLNGEYTRALFHLHKLNTCTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMFVDPGDEEFFE  117 (242)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHTCCBHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCCTTCHHHHH
T ss_pred             hhhhhhhhcchHhHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccccccceeeeccchHHHHH
Confidence            6677777777777777776664432221        3667778888877777  22               24455554 


Q ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHccCCCCc
Q 019586           82 MNKGGDRVEQSRLFDAFLGSSSIWQPQPCKD  112 (338)
Q Consensus        82 ~nLG~~l~~lGr~~eAi~~yekALkl~P~~~  112 (338)
                      .-+|.++.+.|..+||+.+|.......|-.+
T Consensus       118 ~l~a~lltq~g~r~EaI~y~~~Sf~~~~lf~  148 (242)
T 3kae_A          118 SLLGDLCTLSGYREEGIGHYVRSFGKSFLFS  148 (242)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred             HHHHHHHHHhcCHHHhhhHhhhhcCCccccc
Confidence            5579999999999999999999988887544

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=82.21  E-value=3.9  Score=39.27  Aligned_cols=47  Identities=13%  Similarity=0.023  Sum_probs=41.3

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcCCHHHHHHHHHh
Q 019586            2 QQNNYIEAEDAYRRALSIAPDNNKMC-NLGICLMKQGRIGEAKETLRR   48 (338)
Q Consensus         2 q~g~~eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k   48 (338)
                      ..|++.+|+..+++++..+|-+-.+| .+-.+|...|+..+|+..|++
T Consensus       183 ~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~  230 (388)
T 2ff4_A          183 ACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRR  230 (388)
T ss_dssp             HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred             HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            36889999999999999999888877 888889999999999988866

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	338
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	1e-06
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	2e-06
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	2e-05
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	8e-04
d1zbpa1	264	e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V	1e-06
d1fcha_	323	a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting	4e-05
d1fcha_	323	a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting	7e-04
d1hz4a_	366	a.118.8.2 (A:) Transcription factor MalT domain II	8e-05
d1hz4a_	366	a.118.8.2 (A:) Transcription factor MalT domain II	0.001
d1hz4a_	366	a.118.8.2 (A:) Transcription factor MalT domain II	0.004
d1ya0a1	497	a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [T	1e-04
d1ya0a1	497	a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [T	0.002

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.7 bits (112), Expect = 1e-06
 Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 1/50 (2%)

Query: 1   MQQNNYIEAEDAYRRALSIAPDNNK-MCNLGICLMKQGRIGEAKETLRRV 49
            +Q N  EA   YR+AL + P+      NL   L +QG++ EA    +  
Sbjct: 316 REQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEA 365

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.6 bits (109), Expect = 2e-06
 Identities = 8/50 (16%), Positives = 15/50 (30%), Gaps = 1/50 (2%)

Query: 1  MQQNNYIEAEDAYRRALSIAPDNNK-MCNLGICLMKQGRIGEAKETLRRV 49
           Q  ++  AE    +     PDN   +  L     +  R+  +       
Sbjct: 10 YQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLA 59

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.9 bits (102), Expect = 2e-05
 Identities = 15/80 (18%), Positives = 29/80 (36%), Gaps = 1/80 (1%)

Query: 1   MQQNNYIEAEDAYRRALSIAPDNNK-MCNLGICLMKQGRIGEAKETLRRVKPAVADGPRG 59
            +Q     A D YRRA+ + P      CNL   L ++G + EA++               
Sbjct: 248 YEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADS 307

Query: 60  VDSHLKAYERAQQMLKDLES 79
           +++          + + +  
Sbjct: 308 LNNLANIKREQGNIEEAVRL 327

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.5 bits (88), Expect = 8e-04
 Identities = 11/38 (28%), Positives = 16/38 (42%), Gaps = 1/38 (2%)

Query: 1   MQQNNYIEAEDAYRRALSIAPDNNK-MCNLGICLMKQG 37
            QQ    EA   Y+ A+ I+P       N+G  L +  
Sbjct: 350 QQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQ 387

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

 Score = 46.6 bits (110), Expect = 1e-06
 Identities = 11/84 (13%), Positives = 23/84 (27%), Gaps = 1/84 (1%)

Query: 1  MQQNNYIEAEDAYRRALSIAPDNNK-MCNLGICLMKQGRIGEAKETLRRVKPAVADGPRG 59
          + +    +A +    A+  +P +     +    L   G    A E L +      +   G
Sbjct: 7  LSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPG 66

Query: 60 VDSHLKAYERAQQMLKDLESEMMN 83
                  + AQ      +     
Sbjct: 67 ASQLRHLVKAAQARKDFAQGAATA 90

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Length = 323

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.5 bits (98), Expect = 4e-05
 Identities = 10/50 (20%), Positives = 18/50 (36%), Gaps = 1/50 (2%)

Query: 1  MQQNNYIEAEDAYRRALSIAPDN-NKMCNLGICLMKQGRIGEAKETLRRV 49
          +Q+ +   A   +  A+   P +      LG    +  +   A   LRR 
Sbjct: 30 LQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRC 79

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Length = 323

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.6 bits (88), Expect = 7e-04
 Identities = 9/60 (15%), Positives = 18/60 (30%), Gaps = 12/60 (20%)

Query: 1   MQQNNYIEAEDAYRRALSIAPDN------------NKMCNLGICLMKQGRIGEAKETLRR 48
           +    + EA + +  AL++   +            N    L + L   G+         R
Sbjct: 251 INLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADAR 310

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} Length = 366

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

 Score = 41.8 bits (96), Expect = 8e-05
 Identities = 11/55 (20%), Positives = 19/55 (34%), Gaps = 6/55 (10%)

Query: 1  MQQNNYIEAEDAYRRALSIAPDNNK------MCNLGICLMKQGRIGEAKETLRRV 49
          +   N  EAE   + AL   P             LG  L  +G +  +   +++ 
Sbjct: 23 INDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQT 77

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} Length = 366

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

 Score = 38.0 bits (86), Expect = 0.001
 Identities = 13/87 (14%), Positives = 24/87 (27%), Gaps = 8/87 (9%)

Query: 1   MQQNNYIEAEDAYRRALSIAPDNNK-------MCNLGICLMKQGRIGEAKETLRRVKPAV 53
           +    +  AE         A            +  L     + GR  +A+  L      +
Sbjct: 262 ILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDAL-KL 320

Query: 54  ADGPRGVDSHLKAYERAQQMLKDLESE 80
           A+    +   +   E   Q L+ L   
Sbjct: 321 ANRTGFISHFVIEGEAMAQQLRQLIQL 347

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} Length = 366

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

 Score = 36.0 bits (81), Expect = 0.004
 Identities = 11/77 (14%), Positives = 23/77 (29%), Gaps = 13/77 (16%)

Query: 1   MQQNNYIEAEDAYRRALSIAPDNNKMCNLGICLMKQGRIGEAKETLRRVKPAVADGPRGV 60
            Q     +A+     AL +A     + +  I      +       L  +           
Sbjct: 302 WQAGRKSDAQRVLLDALKLANRTGFISHFVIEGEAMAQQLRQLIQLNTLPELEQ------ 355

Query: 61  DSHLKAYERAQQMLKDL 77
                   RAQ++L+++
Sbjct: 356 -------HRAQRILREI 365

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Length = 497

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.3 bits (96), Expect = 1e-04
 Identities = 8/74 (10%), Positives = 24/74 (32%), Gaps = 4/74 (5%)

Query: 7  IEAEDAYRRALSIAPDN-NKMCNLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHL- 64
          +++    R+A  +  D  +           +  + +  + +       A   + V+  L 
Sbjct: 3  LQSAQYLRQAEVLKADMTDSKLGPAEVWTSRQALQDLYQKMLVTDLEYALD-KKVEQDLW 61

Query: 65 -KAYERAQQMLKDL 77
            A++     L+  
Sbjct: 62 NHAFKNQITTLQGQ 75

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Length = 497

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.5 bits (86), Expect = 0.002
 Identities = 16/87 (18%), Positives = 31/87 (35%), Gaps = 7/87 (8%)

Query: 2   QQNNYIEAEDAYRRALSIAPDNNK-MCNLGICLMKQGRIGEAKETLRRVKPAVADGPRGV 60
            +N   +AE  YR A  + P N +    L I    +G          R   ++A      
Sbjct: 164 YRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCR---SIAVKFPFP 220

Query: 61  DSH---LKAYERAQQMLKDLESEMMNK 84
            +     KA  +A +   +++++    
Sbjct: 221 AASTNLQKALSKALESRDEVKTKWGVS 247

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	338
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	99.63
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.61
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	99.6
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.6
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	99.59
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	99.56
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.54
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	99.51
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	99.49
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.44
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	99.39
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.39
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	99.36
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.36
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	99.35
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	99.34
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	99.34
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.33
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	99.28
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	99.28
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	99.22
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	99.21
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	99.16
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	99.09
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.09
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	99.06
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	99.05
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	99.01
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	98.96
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	98.9
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	98.88
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	98.88
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	98.85
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	98.75
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	98.7
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	98.68
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	98.68
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	98.67
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	98.65
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	98.63
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	98.63
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	98.58
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	98.56
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	98.52
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	98.41
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	98.35
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	98.18
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	98.15
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	97.91
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	97.81
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	97.77
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	97.74
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	97.45
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	97.07
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	96.42
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	95.42
d2crba1	83	Nuclear receptor binding factor 2, NRBF2, N-termin	85.05
d1wfda_	93	Hypothetical protein 1500032H18Rik {Mouse (Mus mus	83.22

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.63  E-value=1.5e-15  Score=136.68  Aligned_cols=175  Identities=18%  Similarity=0.162  Sum_probs=144.7

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcCCHHHHHHHHHhh---CcCCcC----------CCCCHHHHHHHH
Q 019586            2 QQNNYIEAEDAYRRALSIAPDNNKMC-NLGICLMKQGRIGEAKETLRRV---KPAVAD----------GPRGVDSHLKAY   67 (338)
Q Consensus         2 q~g~~eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k~---~p~~~d----------~lg~~deAi~~y   67 (338)
                      ..|++++|+.+++++++++|++..++ ++|.++...|++++|+..|++.   .+..+.          ..|++++|+..|
T Consensus       181 ~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~  260 (388)
T d1w3ba_         181 AQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTY  260 (388)
T ss_dssp             TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             ccCcHHHHHHHHHHHHHhCcccHHHHHHHhhhhhccccHHHHHHHHHHhHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence            46889999999999999999999977 9999999999999999999993   333333          278999999999


Q ss_pred             HHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCcccc---cchhhhcCccHHHHHhhhhcccCCChhhh
Q 019586           68 ERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDHIL---PTTNAIKTRDDFADENIDSNVDVNPIVLS  144 (338)
Q Consensus        68 ekAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~~l---~~l~~~~~~~~~A~e~~~~al~~~P~~~~  144 (338)
                      +++++++|+++.+|+++|.++..+|++.+|+.+|+.++...|.+...+   +.+....++.+.|...+..++..+|....
T Consensus       261 ~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~  340 (388)
T d1w3ba_         261 RRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAA  340 (388)
T ss_dssp             HHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHH
T ss_pred             HHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccCCccchhhhHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH
Confidence            999999999999999999999999999999999999999999987633   33356778888899999999999987443


Q ss_pred             hh----hhhhhhcc-------hHHHHHHhHhHHHHhhchhhhh
Q 019586          145 KH----RSVKKLFP-------TANAIKTQENFADENINANIVV  176 (338)
Q Consensus       145 K~----~~~~kl~~-------~~~ai~~~~~~~e~y~nlg~~~  176 (338)
                      -.    .....+..       +.++++..|++.+++.|+|.++
T Consensus       341 ~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~lg~~~  383 (388)
T d1w3ba_         341 AHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTL  383 (388)
T ss_dssp             HHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            22    22222222       3346777888999999999865

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.61  E-value=2.6e-15  Score=120.51  Aligned_cols=93  Identities=14%  Similarity=0.122  Sum_probs=86.5

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcCCHHHHHHHHHhhCcCCcCCCCCHHHHHHHHHHHHHhCCCCHHH
Q 019586            2 QQNNYIEAEDAYRRALSIAPDNNKMC-NLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDLESE   80 (338)
Q Consensus         2 q~g~~eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k~~p~~~d~lg~~deAi~~yekAL~l~Pd~~~a   80 (338)
                      +.|+|++|+.+|+++|+++|+++.+| ++|.+|..+|++                     ++|+..|+++++++|+++.+
T Consensus        15 ~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~---------------------~~A~~~~~~al~~~p~~~~~   73 (117)
T d1elwa_          15 SVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDY---------------------QKAYEDGCKTVDLKPDWGKG   73 (117)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCH---------------------HHHHHHHHHHHHHCTTCHHH
T ss_pred             HcCCHHHHHHHHHHHHhcCCcchhhhhcccccccccccc---------------------cccchhhhhHHHhccchhhH
Confidence            57999999999999999999999977 999999999999                     55666677799999999999


Q ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHccCCCCcccc
Q 019586           81 MMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDHIL  115 (338)
Q Consensus        81 ~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~~l  115 (338)
                      |+++|.++..+|++++|+.+|+++++++|.++.++
T Consensus        74 ~~~~g~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~  108 (117)
T d1elwa_          74 YSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLK  108 (117)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHH
T ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHH
Confidence            99999999999999999999999999999998743

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=99.60  E-value=3.2e-15  Score=130.99  Aligned_cols=194  Identities=10%  Similarity=0.017  Sum_probs=125.2

Q ss_pred             CCHHHHHHHHHHHHHhCC----CCHHHH-HHHHHHHHcCCHHHHHHHHHh---hCcCCcC----------CCCCHHHHHH
Q 019586            4 NNYIEAEDAYRRALSIAP----DNNKMC-NLGICLMKQGRIGEAKETLRR---VKPAVAD----------GPRGVDSHLK   65 (338)
Q Consensus         4 g~~eeAi~~y~kALeldP----d~a~a~-nLG~~y~~~G~~dEAi~~~~k---~~p~~~d----------~lg~~deAi~   65 (338)
                      .+++.|+..+.+++...+    ..+.++ ++|.+|..+|++++|+..|++   +.|+++.          .+|++++|+.
T Consensus        13 ~~~e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~   92 (259)
T d1xnfa_          13 LQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYE   92 (259)
T ss_dssp             HHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHhhhchHHHHHHHHHHhhh
Confidence            345677777777776533    222333 788888888888888888887   4555554          2778899999


Q ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCcccccch---hhhcCccHHHHHhhhh--cccCCC
Q 019586           66 AYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDHILPTT---NAIKTRDDFADENIDS--NVDVNP  140 (338)
Q Consensus        66 ~yekAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~~l~~l---~~~~~~~~~A~e~~~~--al~~~P  140 (338)
                      +|+++++++|+++.+|+++|.+|..+|++++|+.+|+++++++|.+......+   ....+...........  .....+
T Consensus        93 ~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (259)
T d1xnfa_          93 AFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQ  172 (259)
T ss_dssp             HHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCCCS
T ss_pred             hhhHHHHHHhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhhhHHHHHHHHHHhhccchhh
Confidence            99999999999999999999999999999999999999999999876522111   1122222221111111  111111


Q ss_pred             hhhhhh-hhhh----------hhcchHHHHHHhHhHHHHhhchhhhhhHhhhhhhhhhhhhccccccCCCCC
Q 019586          141 IVLSKH-RSVK----------KLFPTANAIKTQENFADENINANIVVNQTVLAQQRGVQQLAPFGNSWNIDA  201 (338)
Q Consensus       141 ~~~~K~-~~~~----------kl~~~~~ai~~~~~~~e~y~nlg~~~~~~~~~d~r~~~~~~~~~~~~~~~~  201 (338)
                      ...... ....          ........+...+++.++++++|.+.    ....+..+++..+...+...+
T Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~----~~~g~~~~A~~~~~~al~~~p  240 (259)
T d1xnfa_         173 WGWNIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYY----LSLGDLDSATALFKLAVANNV  240 (259)
T ss_dssp             THHHHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHH----HHTTCHHHHHHHHHHHHTTCC
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHH----HHCCCHHHHHHHHHHHHHcCC
Confidence            111100 0000          01111225566789999999999944    556667777776766666643

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.60  E-value=1.7e-15  Score=136.96  Aligned_cols=140  Identities=14%  Similarity=0.022  Sum_probs=85.2

Q ss_pred             CCCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcCCHHHHHHHHHh---hCcCCcCC----------C-----------
Q 019586            3 QNNYIEAEDAYRRALSIAPDNNKMC-NLGICLMKQGRIGEAKETLRR---VKPAVADG----------P-----------   57 (338)
Q Consensus         3 ~g~~eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k---~~p~~~d~----------l-----------   57 (338)
                      .|++++|+.+|+++++.+|++..+| ++|.+|..+|++++|+.+|.+   +.|.++..          .           
T Consensus        32 ~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~  111 (323)
T d1fcha_          32 EGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILR  111 (323)
T ss_dssp             TTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccccccccccccccccccccccccccccchh
Confidence            4666666666666666666666655 666666666666666666666   23333220          1           


Q ss_pred             --------------------------------------CCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHCCCHHHH
Q 019586           58 --------------------------------------RGVDSHLKAYERAQQMLKDL--ESEMMNKGGDRVEQSRLFDA   97 (338)
Q Consensus        58 --------------------------------------g~~deAi~~yekAL~l~Pd~--~~a~~nLG~~l~~lGr~~eA   97 (338)
                                                            +.+.+|+..|+++++++|+.  +.++..+|.++..+|++++|
T Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~~~A  191 (323)
T d1fcha_         112 DWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKA  191 (323)
T ss_dssp             HHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHH
T ss_pred             hHHHhccchHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHhhh
Confidence                                                  14455555566666666553  45566677777777777777


Q ss_pred             HHHHHHHHccCCCCcccc---cchhhhcCccHHHHHhhhhcccCCChh
Q 019586           98 FLGSSSIWQPQPCKDHIL---PTTNAIKTRDDFADENIDSNVDVNPIV  142 (338)
Q Consensus        98 i~~yekALkl~P~~~~~l---~~l~~~~~~~~~A~e~~~~al~~~P~~  142 (338)
                      +.+|++++..+|+++..+   +.+....++...|.+.+..++..+|..
T Consensus       192 ~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~  239 (323)
T d1fcha_         192 VDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGY  239 (323)
T ss_dssp             HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred             hcccccccccccccccchhhhhhcccccccchhHHHHHHHHHHHhhcc
Confidence            777777777777666522   333456666666766666666666653

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.59  E-value=1.7e-15  Score=128.38  Aligned_cols=92  Identities=17%  Similarity=0.171  Sum_probs=85.1

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcCCHHHHHHHHHhhCcCCcCCCCCHHHHHHHHHHHHHhCCCCHHH
Q 019586            2 QQNNYIEAEDAYRRALSIAPDNNKMC-NLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDLESE   80 (338)
Q Consensus         2 q~g~~eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k~~p~~~d~lg~~deAi~~yekAL~l~Pd~~~a   80 (338)
                      +.|+|++|+.+|++||+++|+++.+| ++|.||..+|+|                     ++|+.+|++|++++|++..+
T Consensus        16 ~~g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~~~~~---------------------~~Ai~~~~~al~l~p~~~~a   74 (201)
T d2c2la1          16 VGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQP---------------------EQALADCRRALELDGQSVKA   74 (201)
T ss_dssp             HTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCH---------------------HHHHHHHHHHTTSCTTCHHH
T ss_pred             HcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHhhhhhh---------------------hhhhHHHHHHHHhCCCcHHH
Confidence            57999999999999999999999977 999999999999                     56666677799999999999


Q ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHccCCCCccc
Q 019586           81 MMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDHI  114 (338)
Q Consensus        81 ~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~~  114 (338)
                      |+++|.+|..+|++++|+.+|+++++++|.+...
T Consensus        75 ~~~lg~~~~~l~~~~~A~~~~~~al~l~p~~~~~  108 (201)
T d2c2la1          75 HFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLN  108 (201)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCC
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHH
Confidence            9999999999999999999999999999976653

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.56  E-value=1.1e-14  Score=121.71  Aligned_cols=92  Identities=14%  Similarity=0.225  Sum_probs=86.1

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcCCHHHHHHHHHhhCcCCcCCCCCHHHHHHHHHHHHHhCCCCHHH
Q 019586            2 QQNNYIEAEDAYRRALSIAPDNNKMC-NLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDLESE   80 (338)
Q Consensus         2 q~g~~eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k~~p~~~d~lg~~deAi~~yekAL~l~Pd~~~a   80 (338)
                      +.|+|++|+.+|++|++++|++..+| ++|.||..+|++                     ++|+.+|++||+++|++..+
T Consensus        22 ~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~---------------------~~A~~~~~kal~~~p~~~~a   80 (159)
T d1a17a_          22 KAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECY---------------------GYALGDATRAIELDKKYIKG   80 (159)
T ss_dssp             HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCH---------------------HHHHHHHHHHHHHCTTCHHH
T ss_pred             HcCCHHHHHHHhhhccccchhhhhhhhhhHHHHHhcccc---------------------chHHHHHHHHHHHcccchHH
Confidence            57999999999999999999999988 999999999999                     56666777799999999999


Q ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHccCCCCccc
Q 019586           81 MMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDHI  114 (338)
Q Consensus        81 ~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~~  114 (338)
                      |+++|.++..+|++++|+.+|+++++++|.+..+
T Consensus        81 ~~~~g~~~~~~g~~~eA~~~~~~a~~~~p~~~~~  114 (159)
T d1a17a_          81 YYRRAASNMALGKFRAALRDYETVVKVKPHDKDA  114 (159)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHH
Confidence            9999999999999999999999999999998773

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=7.4e-15  Score=136.62  Aligned_cols=114  Identities=9%  Similarity=-0.009  Sum_probs=103.2

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcCC-HHHHHHHHHhh---CcCCcC----------CCCCHHHHHHH
Q 019586            2 QQNNYIEAEDAYRRALSIAPDNNKMC-NLGICLMKQGR-IGEAKETLRRV---KPAVAD----------GPRGVDSHLKA   66 (338)
Q Consensus         2 q~g~~eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G~-~dEAi~~~~k~---~p~~~d----------~lg~~deAi~~   66 (338)
                      +.+.+++|+.+|++||+++|++..+| ++|.++...|+ +++|+..++++   .|.+..          .+|++++|+..
T Consensus        55 ~~e~~~~Al~~~~~ai~lnP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~~~a~~~~~~~~~~l~~~~eAl~~  134 (315)
T d2h6fa1          55 RDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEF  134 (315)
T ss_dssp             HTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHH
T ss_pred             hCCchHHHHHHHHHHHHHCCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHhhccHHHHHHH
Confidence            35789999999999999999999988 99999999875 99999999994   555544          27899999999


Q ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCcccc
Q 019586           67 YERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDHIL  115 (338)
Q Consensus        67 yekAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~~l  115 (338)
                      |+++++++|++..+|+++|.++..+|++++|+.+|+++++++|.+...+
T Consensus       135 ~~kal~~dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~n~~a~  183 (315)
T d2h6fa1         135 IADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVW  183 (315)
T ss_dssp             HHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHH
T ss_pred             HhhhhhhhhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCCccHHHH
Confidence            9999999999999999999999999999999999999999999987633

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.51  E-value=6.3e-14  Score=125.80  Aligned_cols=143  Identities=21%  Similarity=0.222  Sum_probs=111.3

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcCCHHHHHHHHHhh---CcCCcC----------CCCCHHHHHHHH
Q 019586            2 QQNNYIEAEDAYRRALSIAPDNNKMC-NLGICLMKQGRIGEAKETLRRV---KPAVAD----------GPRGVDSHLKAY   67 (338)
Q Consensus         2 q~g~~eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k~---~p~~~d----------~lg~~deAi~~y   67 (338)
                      ..|++++|+..|++++.++|.....+ ++|.+|..+|++++|+..|+++   .|.+++          ..|++++|+..|
T Consensus       215 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~  294 (388)
T d1w3ba_         215 EARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCY  294 (388)
T ss_dssp             TTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred             ccccHHHHHHHHHHhHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            35778888888888888888888866 8888888888888888888883   444443          157888888888


Q ss_pred             HHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCccc---ccchhhhcCccHHHHHhhhhcccCCChhhh
Q 019586           68 ERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDHI---LPTTNAIKTRDDFADENIDSNVDVNPIVLS  144 (338)
Q Consensus        68 ekAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~~---l~~l~~~~~~~~~A~e~~~~al~~~P~~~~  144 (338)
                      ++++...|.....+..+|.++..+|++++|+.+|+++++++|+++..   ++.+....++.+.|.+.+..++.++|....
T Consensus       295 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~  374 (388)
T d1w3ba_         295 NTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFAD  374 (388)
T ss_dssp             HHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHH
T ss_pred             HhhhccCCccchhhhHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Confidence            88888888888888888888888888888888888888888887763   333456777888888888888888886443

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.49  E-value=1.1e-14  Score=121.53  Aligned_cols=102  Identities=11%  Similarity=0.052  Sum_probs=91.7

Q ss_pred             CCCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcCCHHHHHHHHHhhCcCCcCCCCCHHHHHHHHHHHHHhCCCCHHHH
Q 019586            3 QNNYIEAEDAYRRALSIAPDNNKMC-NLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDLESEM   81 (338)
Q Consensus         3 ~g~~eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k~~p~~~d~lg~~deAi~~yekAL~l~Pd~~~a~   81 (338)
                      .+.|++|+..|++|++++|++++++ ++|.+|...+++..+......           +++|+..|++|++++|+++.+|
T Consensus        10 ~~~fe~A~~~~e~al~~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~-----------~~~Ai~~~~kAl~l~P~~~~a~   78 (145)
T d1zu2a1          10 ILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQM-----------IQEAITKFEEALLIDPKKDEAV   78 (145)
T ss_dssp             HHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHH-----------HHHHHHHHHHHHHHCTTCHHHH
T ss_pred             HccHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHhhhhhhhhHHHHH-----------HHHHHHHHHHHHHhcchhhHHH
Confidence            3568999999999999999999977 999999999998877776655           4899999999999999999999


Q ss_pred             HHHHHHHHHCCC-----------HHHHHHHHHHHHccCCCCcccc
Q 019586           82 MNKGGDRVEQSR-----------LFDAFLGSSSIWQPQPCKDHIL  115 (338)
Q Consensus        82 ~nLG~~l~~lGr-----------~~eAi~~yekALkl~P~~~~~l  115 (338)
                      +++|.+|..+|+           |.+|+.+|+++++++|++...+
T Consensus        79 ~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l~P~~~~~~  123 (145)
T d1zu2a1          79 WCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYL  123 (145)
T ss_dssp             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             hhHHHHHHHcccchhhHHHHHHhHHHhhhhhhcccccCCCHHHHH
Confidence            999999998875           6999999999999999987633

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=99.44  E-value=2e-13  Score=108.53  Aligned_cols=83  Identities=12%  Similarity=0.078  Sum_probs=77.2

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcCCHHHHHHHHHhhCcCCcCCCCCHHHHHHHHHHHHHhCCCCHHH
Q 019586            2 QQNNYIEAEDAYRRALSIAPDNNKMC-NLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDLESE   80 (338)
Q Consensus         2 q~g~~eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k~~p~~~d~lg~~deAi~~yekAL~l~Pd~~~a   80 (338)
                      +.|++++|+.+|++++.++|++..+| ++|.+|...|++                     ++|+.+|++|++++|++..+
T Consensus        28 ~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~---------------------~~A~~~~~~al~~~p~~~~a   86 (112)
T d1hxia_          28 KLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKD---------------------GLAIIALNHARMLDPKDIAV   86 (112)
T ss_dssp             HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCH---------------------HHHHHHHHHHHHHCTTCHHH
T ss_pred             HHhhhHHHHHHHhhhcccccccchhhhhhhhhhhhhhhH---------------------HHhhcccccccccccccccc
Confidence            57999999999999999999999977 999999999999                     55666677799999999999


Q ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHH
Q 019586           81 MMNKGGDRVEQSRLFDAFLGSSSIW  105 (338)
Q Consensus        81 ~~nLG~~l~~lGr~~eAi~~yekAL  105 (338)
                      |++||.+|..+|++++|+.++++.|
T Consensus        87 ~~~la~~y~~~g~~~~A~~~l~~~l  111 (112)
T d1hxia_          87 HAALAVSHTNEHNANAALASLRAWL  111 (112)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHCCCHHHHHHHHHHHh
Confidence            9999999999999999999999976

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.39  E-value=2.8e-13  Score=110.46  Aligned_cols=93  Identities=8%  Similarity=0.085  Sum_probs=83.0

Q ss_pred             CCCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcCCHHHHHHHHHhhCcCCcCCCCCHHHHHHHHHHHHHhCCCC--HH
Q 019586            3 QNNYIEAEDAYRRALSIAPDNNKMC-NLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDL--ES   79 (338)
Q Consensus         3 ~g~~eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k~~p~~~d~lg~~deAi~~yekAL~l~Pd~--~~   79 (338)
                      .+++++|++.|+++++++|++...+ |+|.||...++.+.                  +++|+..|+++++.+|..  ..
T Consensus        12 ~~~l~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~s~~~~d------------------~~~Ai~~l~~~l~~~~~~~~~~   73 (122)
T d1nzna_          12 VEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDD------------------IRKGIVLLEELLPKGSKEEQRD   73 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHH------------------HHHHHHHHHHHTTTSCHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcchHH------------------HHHHHHHHHHHHhccCCchHHH
Confidence            3578999999999999999999976 99999998777743                  267888899999988765  46


Q ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCcc
Q 019586           80 EMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDH  113 (338)
Q Consensus        80 a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~  113 (338)
                      +|++||.+|..+|++++|+.+|+++|+++|++..
T Consensus        74 ~~~~Lg~~y~~~g~~~~A~~~~~~aL~~~P~~~~  107 (122)
T d1nzna_          74 YVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQ  107 (122)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHhCcCCHH
Confidence            8999999999999999999999999999999987

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.39  E-value=3.2e-13  Score=121.77  Aligned_cols=111  Identities=15%  Similarity=0.166  Sum_probs=97.6

Q ss_pred             CCHHHHHHHHHHHHHhCCCCH--HHH-HHHHHHHHcCCHHHHHHHHHh---hCcCCcC----------CCCCHHHHHHHH
Q 019586            4 NNYIEAEDAYRRALSIAPDNN--KMC-NLGICLMKQGRIGEAKETLRR---VKPAVAD----------GPRGVDSHLKAY   67 (338)
Q Consensus         4 g~~eeAi~~y~kALeldPd~a--~a~-nLG~~y~~~G~~dEAi~~~~k---~~p~~~d----------~lg~~deAi~~y   67 (338)
                      +.+.+|+..|.++++++|+..  ..+ ++|.++..+|++++|+..|++   ..|.++.          ..|++++|+.+|
T Consensus       150 ~~~~~a~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~  229 (323)
T d1fcha_         150 SLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAY  229 (323)
T ss_dssp             HHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHhhhhcccccccccccccccchhhhhhcccccccchhHHHHH
Confidence            457889999999999999754  444 999999999999999999999   4455544          289999999999


Q ss_pred             HHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCccc
Q 019586           68 ERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDHI  114 (338)
Q Consensus        68 ekAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~~  114 (338)
                      +++++++|+++.+|+++|.+|..+|++++|+.+|+++++++|++...
T Consensus       230 ~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~  276 (323)
T d1fcha_         230 RRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGP  276 (323)
T ss_dssp             HHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC---
T ss_pred             HHHHHHhhccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcChhh
Confidence            99999999999999999999999999999999999999999998763

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.36  E-value=1.1e-12  Score=111.37  Aligned_cols=93  Identities=15%  Similarity=0.211  Sum_probs=81.8

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCCH---------------HHH-HHHHHHHHcCCHHHHHHHHHhhCcCCcCCCCCHHHHHH
Q 019586            2 QQNNYIEAEDAYRRALSIAPDNN---------------KMC-NLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLK   65 (338)
Q Consensus         2 q~g~~eeAi~~y~kALeldPd~a---------------~a~-nLG~~y~~~G~~dEAi~~~~k~~p~~~d~lg~~deAi~   65 (338)
                      +.|+|++|+.+|++||.+.|...               ..| |+|.||.++|+|                     ++|+.
T Consensus        25 ~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~---------------------~~A~~   83 (170)
T d1p5qa1          25 KEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAF---------------------SAAIE   83 (170)
T ss_dssp             HHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCH---------------------HHHHH
T ss_pred             HcCCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHhhhhc---------------------ccccc
Confidence            46899999999999999987532               123 899999999999                     56666


Q ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCcccc
Q 019586           66 AYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDHIL  115 (338)
Q Consensus        66 ~yekAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~~l  115 (338)
                      +++++|+++|+++.+|+++|.+|..+|++++|+.+|+++++++|+++.+.
T Consensus        84 ~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~~~  133 (170)
T d1p5qa1          84 SCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAK  133 (170)
T ss_dssp             HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHH
T ss_pred             hhhhhhhccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHH
Confidence            77779999999999999999999999999999999999999999987743

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.36  E-value=6.7e-13  Score=123.15  Aligned_cols=111  Identities=8%  Similarity=-0.041  Sum_probs=101.1

Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcCCHHHHHHHHHhh---CcCCcC----------CCCCHHHHHHHHHH
Q 019586            4 NNYIEAEDAYRRALSIAPDNNKMC-NLGICLMKQGRIGEAKETLRRV---KPAVAD----------GPRGVDSHLKAYER   69 (338)
Q Consensus         4 g~~eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k~---~p~~~d----------~lg~~deAi~~yek   69 (338)
                      +++++|+.+|+++++++|++..+| ++|.++..+|++++|+..|.++   .|.+..          .++++++|+.+|++
T Consensus        92 ~~~~eal~~~~~al~~~p~~~~a~~~~~~~~~~l~~~~eAl~~~~kal~~dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~  171 (315)
T d2h6fa1          92 KDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQ  171 (315)
T ss_dssp             CCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHhhccHHHHHHHHhhhhhhhhcchHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence            369999999999999999999988 9999999999999999999994   455443          26899999999999


Q ss_pred             HHHhCCCCHHHHHHHHHHHHHCCC------HHHHHHHHHHHHccCCCCccc
Q 019586           70 AQQMLKDLESEMMNKGGDRVEQSR------LFDAFLGSSSIWQPQPCKDHI  114 (338)
Q Consensus        70 AL~l~Pd~~~a~~nLG~~l~~lGr------~~eAi~~yekALkl~P~~~~~  114 (338)
                      +|+++|++..+|+++|.++...++      +++|+.+|.++++++|.+...
T Consensus       172 al~~~p~n~~a~~~r~~~l~~~~~~~~~~~~~~ai~~~~~al~~~P~~~~~  222 (315)
T d2h6fa1         172 LLKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNESA  222 (315)
T ss_dssp             HHHHCTTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTTCHHH
T ss_pred             HHHHCCccHHHHHHHHHHHHHccccchhhhhHHhHHHHHHHHHhCCCchHH
Confidence            999999999999999999999888      589999999999999998763

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=99.35  E-value=2.1e-12  Score=107.89  Aligned_cols=92  Identities=17%  Similarity=0.118  Sum_probs=80.4

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCCH----------------HHH-HHHHHHHHcCCHHHHHHHHHhhCcCCcCCCCCHHHHH
Q 019586            2 QQNNYIEAEDAYRRALSIAPDNN----------------KMC-NLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHL   64 (338)
Q Consensus         2 q~g~~eeAi~~y~kALeldPd~a----------------~a~-nLG~~y~~~G~~dEAi~~~~k~~p~~~d~lg~~deAi   64 (338)
                      +.|+|.+|+..|++||.+-+...                ..+ |+|.||.++|+|                     ++|+
T Consensus        29 ~~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~---------------------~~Al   87 (153)
T d2fbna1          29 KKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDY---------------------PKAI   87 (153)
T ss_dssp             HTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCH---------------------HHHH
T ss_pred             HcCCHHHHHHHHHHHHhhCcchhhhhhHHHHHhhhhHHHHHHhhHHHHHHHhccc---------------------chhh
Confidence            47899999999999998765322                122 899999999999                     5566


Q ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCccc
Q 019586           65 KAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDHI  114 (338)
Q Consensus        65 ~~yekAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~~  114 (338)
                      .+|++||+++|++..+|+++|.+|..+|++++|+.+|+++++++|++..+
T Consensus        88 ~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~  137 (153)
T d2fbna1          88 DHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDI  137 (153)
T ss_dssp             HHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHH
T ss_pred             hhhhccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Confidence            66777999999999999999999999999999999999999999998773

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.34  E-value=8e-13  Score=111.42  Aligned_cols=93  Identities=14%  Similarity=0.160  Sum_probs=80.4

Q ss_pred             CCCCHHHHHHHHHHHHHhC----------------CCCHHHH-HHHHHHHHcCCHHHHHHHHHhhCcCCcCCCCCHHHHH
Q 019586            2 QQNNYIEAEDAYRRALSIA----------------PDNNKMC-NLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHL   64 (338)
Q Consensus         2 q~g~~eeAi~~y~kALeld----------------Pd~a~a~-nLG~~y~~~G~~dEAi~~~~k~~p~~~d~lg~~deAi   64 (338)
                      ..|+|++|+..|++||.+.                |.....+ |+|.||.++|+|                     ++|+
T Consensus        39 ~~~~y~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~---------------------~~Ai   97 (169)
T d1ihga1          39 KSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDW---------------------QGAV   97 (169)
T ss_dssp             HTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCH---------------------HHHH
T ss_pred             HcCCHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhChhhHHHHHHHHHHHHhhccc---------------------chhh
Confidence            4689999999999999753                3333344 999999999999                     5666


Q ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCcccc
Q 019586           65 KAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDHIL  115 (338)
Q Consensus        65 ~~yekAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~~l  115 (338)
                      ..|++||+++|+++.+|+++|.+|..+|++++|+.+|+++++++|++..+.
T Consensus        98 ~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~~~~  148 (169)
T d1ihga1          98 DSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQ  148 (169)
T ss_dssp             HHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             hhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHH
Confidence            667779999999999999999999999999999999999999999987643

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.34  E-value=4.1e-12  Score=110.04  Aligned_cols=87  Identities=15%  Similarity=0.181  Sum_probs=70.8

Q ss_pred             CCCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcCCHHHHHHHHHhhCcCCcCCCCCHHHHHHHHHHHHHhCCCCHHHH
Q 019586            3 QNNYIEAEDAYRRALSIAPDNNKMC-NLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDLESEM   81 (338)
Q Consensus         3 ~g~~eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k~~p~~~d~lg~~deAi~~yekAL~l~Pd~~~a~   81 (338)
                      .|+|++|+..|++   +.|.++..| |+|.+|..+|++                     ++|+.+|++||+++|+++.+|
T Consensus        18 ~~d~~~Al~~~~~---i~~~~~~~~~nlG~~~~~~g~~---------------------~~A~~~~~kAl~ldp~~~~a~   73 (192)
T d1hh8a_          18 KKDWKGALDAFSA---VQDPHSRICFNIGCMYTILKNM---------------------TEAEKAFTRSINRDKHLAVAY   73 (192)
T ss_dssp             TTCHHHHHHHHHT---SSSCCHHHHHHHHHHHHHTTCH---------------------HHHHHHHHHHHHHCTTCHHHH
T ss_pred             CCCHHHHHHHHHh---cCCCCHHHHHHHHHHHHHcCCc---------------------hhHHHHHHHHHHHhhhhhhhH
Confidence            5677777777765   244455544 777777777777                     667777788999999999999


Q ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHccCCCCcc
Q 019586           82 MNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDH  113 (338)
Q Consensus        82 ~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~  113 (338)
                      +++|.+|.++|++++|+..|++++...+.+..
T Consensus        74 ~~~g~~~~~~g~~~~A~~~~~kAl~~~~~n~~  105 (192)
T d1hh8a_          74 FQRGMLYYQTEKYDLAIKDLKEALIQLRGNQL  105 (192)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSE
T ss_pred             HHHHHHHHhhccHHHHHHHHHHHHHhCccCch
Confidence            99999999999999999999999998887654

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.33  E-value=2.5e-12  Score=104.26  Aligned_cols=88  Identities=14%  Similarity=0.186  Sum_probs=77.1

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcCCHHHHHHHHHhhCcCCcCCCCCHHHHHHHHHHHHHhCCCCH--
Q 019586            2 QQNNYIEAEDAYRRALSIAPDNNKMC-NLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDLE--   78 (338)
Q Consensus         2 q~g~~eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k~~p~~~d~lg~~deAi~~yekAL~l~Pd~~--   78 (338)
                      +.|+|++|+.+|+++|.++|++..++ ++|.+|..+|+|                     ++|+.+|++||+++|++.  
T Consensus        16 ~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~---------------------~~A~~~~~~al~l~~~~~~~   74 (128)
T d1elra_          16 KKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDY---------------------NKCRELCEKAIEVGRENRED   74 (128)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCH---------------------HHHHHHHHHHHHHHHHSTTC
T ss_pred             HcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCch---------------------HHHHHHHHHHHHhCcccHHH
Confidence            57999999999999999999999977 999999999999                     555666666888887764  


Q ss_pred             -----HHHHHHHHHHHHCCCHHHHHHHHHHHHccCCC
Q 019586           79 -----SEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPC  110 (338)
Q Consensus        79 -----~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~  110 (338)
                           .+|.++|.++..++++++|+.+|++++..++.
T Consensus        75 ~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~~~  111 (128)
T d1elra_          75 YRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRT  111 (128)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC
T ss_pred             HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC
Confidence                 56788899999999999999999999988764

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=99.28  E-value=8.9e-12  Score=105.21  Aligned_cols=93  Identities=14%  Similarity=0.197  Sum_probs=80.2

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCCH---------------HHH-HHHHHHHHcCCHHHHHHHHHhhCcCCcCCCCCHHHHHH
Q 019586            2 QQNNYIEAEDAYRRALSIAPDNN---------------KMC-NLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLK   65 (338)
Q Consensus         2 q~g~~eeAi~~y~kALeldPd~a---------------~a~-nLG~~y~~~G~~dEAi~~~~k~~p~~~d~lg~~deAi~   65 (338)
                      ..|+|.+|+.+|++||.+-+...               ..| |+|.||..+|+|                     ++|+.
T Consensus        27 ~~~~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~---------------------~~Ai~   85 (168)
T d1kt1a1          27 KGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREY---------------------TKAVE   85 (168)
T ss_dssp             HTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCH---------------------HHHHH
T ss_pred             HcCCHHHHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHHHHHHHhhhc---------------------ccchh
Confidence            47899999999999998644311               123 899999999999                     55666


Q ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCcccc
Q 019586           66 AYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDHIL  115 (338)
Q Consensus        66 ~yekAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~~l  115 (338)
                      +++++++++|++..+|+++|.+|..+|++++|+.+|+++++++|++..+.
T Consensus        86 ~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~~~  135 (168)
T d1kt1a1          86 CCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAAR  135 (168)
T ss_dssp             HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHH
T ss_pred             hhhhhhhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Confidence            67779999999999999999999999999999999999999999998743

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=99.28  E-value=1.8e-11  Score=106.58  Aligned_cols=86  Identities=12%  Similarity=0.035  Sum_probs=76.8

Q ss_pred             CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCcccc---cchhhhcCccHHHHHhhh
Q 019586           57 PRGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDHIL---PTTNAIKTRDDFADENID  133 (338)
Q Consensus        57 lg~~deAi~~yekAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~~l---~~l~~~~~~~~~A~e~~~  133 (338)
                      .|++++|+.+|++||+++|+++.+|+++|.+|..+|++++|+.+|+++++++|.++..+   +.+....++...|.+.+.
T Consensus        50 ~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~  129 (259)
T d1xnfa_          50 LGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLL  129 (259)
T ss_dssp             TTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHhhccCCCCHHHHhhhchHHHHHHHHHHhhhhhhHHHHHHhhhhhhHHHHHHHHHHHhhHHHHHHHHH
Confidence            79999999999999999999999999999999999999999999999999999988733   333567788888988888


Q ss_pred             hcccCCChh
Q 019586          134 SNVDVNPIV  142 (338)
Q Consensus       134 ~al~~~P~~  142 (338)
                      .++..+|..
T Consensus       130 ~al~~~p~~  138 (259)
T d1xnfa_         130 AFYQDDPND  138 (259)
T ss_dssp             HHHHHCTTC
T ss_pred             HHHhhcccc
Confidence            888877753

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=99.22  E-value=1.3e-11  Score=102.88  Aligned_cols=98  Identities=17%  Similarity=0.105  Sum_probs=82.2

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCCH------------HHH-HHHHHHHHcCCHHHHHHHHHhhCcCCcCCCCCHHHHHHHHH
Q 019586            2 QQNNYIEAEDAYRRALSIAPDNN------------KMC-NLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYE   68 (338)
Q Consensus         2 q~g~~eeAi~~y~kALeldPd~a------------~a~-nLG~~y~~~G~~dEAi~~~~k~~p~~~d~lg~~deAi~~ye   68 (338)
                      +.|+|++|+..|++||++.|+.+            ..| |+|.+|..+|+|++|+..++              +|+.++.
T Consensus        21 ~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~--------------~al~~~~   86 (156)
T d2hr2a1          21 VAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSAD--------------KALHYFN   86 (156)
T ss_dssp             HHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHH--------------HHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhh--------------hhhhccc
Confidence            45899999999999999988653            234 99999999999999888884              4777777


Q ss_pred             HHHHhCCCC----HHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCcc
Q 019586           69 RAQQMLKDL----ESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDH  113 (338)
Q Consensus        69 kAL~l~Pd~----~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~  113 (338)
                      +.....++.    ..+|+++|.+|..+|++++|+.+|++++++.|....
T Consensus        87 ~~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~~~~~  135 (156)
T d2hr2a1          87 RRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKG  135 (156)
T ss_dssp             HHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCS
T ss_pred             ccccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhHHhhc
Confidence            776666543    357899999999999999999999999999887655

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.21  E-value=1e-10  Score=101.01  Aligned_cols=126  Identities=14%  Similarity=-0.008  Sum_probs=89.7

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcCCHHHHHHHHHhhC---cCCcCCCCCHHHHHHHHHHHHHhCCCC
Q 019586            2 QQNNYIEAEDAYRRALSIAPDNNKMC-NLGICLMKQGRIGEAKETLRRVK---PAVADGPRGVDSHLKAYERAQQMLKDL   77 (338)
Q Consensus         2 q~g~~eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k~~---p~~~d~lg~~deAi~~yekAL~l~Pd~   77 (338)
                      .+|+|++|+.+|++||+++|+++.+| ++|.+|..+|++++|+..|+++.   +.+...        .+....+......
T Consensus        48 ~~g~~~~A~~~~~kAl~ldp~~~~a~~~~g~~~~~~g~~~~A~~~~~kAl~~~~~n~~~--------~~~~~~~~~~~~~  119 (192)
T d1hh8a_          48 ILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLI--------DYKILGLQFKLFA  119 (192)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEE--------ECGGGTBCCEEEH
T ss_pred             HcCCchhHHHHHHHHHHHhhhhhhhHHHHHHHHHhhccHHHHHHHHHHHHHhCccCchH--------HHHHhhhhcccch
Confidence            47999999999999999999999988 99999999999988777776621   111100        0000000111223


Q ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCcccccchhhhcCccHHHHHhhhhcccCCChhhh
Q 019586           78 ESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDHILPTTNAIKTRDDFADENIDSNVDVNPIVLS  144 (338)
Q Consensus        78 ~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~~l~~l~~~~~~~~~A~e~~~~al~~~P~~~~  144 (338)
                      .++++++|.++..+|++++|+..|.+++++.|....         ...+.+.+.+......+|....
T Consensus       120 ~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~~~~~---------~~~~~Al~~~~~~~~~~~~~ip  177 (192)
T d1hh8a_         120 CEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPRH---------SKIDKAMECVWKQKLYEPVVIP  177 (192)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSGGG---------GHHHHHHHHHHTTCCCCCCCCC
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcch---------HHHHHHHHHHHhhhhCCccccc
Confidence            578899999999999999999999999999987433         1124455666666666665443

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.16  E-value=3e-11  Score=101.58  Aligned_cols=95  Identities=12%  Similarity=-0.021  Sum_probs=81.4

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHhhCcCCcCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Q 019586           26 MCNLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIW  105 (338)
Q Consensus        26 a~nLG~~y~~~G~~dEAi~~~~k~~p~~~d~lg~~deAi~~yekAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekAL  105 (338)
                      +.+.|..|...|+|                     ++|+..|++||+++|+++.+|+++|.+|..+|++++|+.+|++++
T Consensus         7 l~~~Gn~~~~~g~~---------------------~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al   65 (201)
T d2c2la1           7 LKEQGNRLFVGRKY---------------------PEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRAL   65 (201)
T ss_dssp             HHHHHHHHHHTTCH---------------------HHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHcCCH---------------------HHHHHHHHHHHHhCCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHH
Confidence            44899999999999                     566666777999999999999999999999999999999999999


Q ss_pred             ccCCCCcc---cccchhhhcCccHHHHHhhhhcccCCCh
Q 019586          106 QPQPCKDH---ILPTTNAIKTRDDFADENIDSNVDVNPI  141 (338)
Q Consensus       106 kl~P~~~~---~l~~l~~~~~~~~~A~e~~~~al~~~P~  141 (338)
                      +++|++..   .++.+....++.+.|...+..++.++|.
T Consensus        66 ~l~p~~~~a~~~lg~~~~~l~~~~~A~~~~~~al~l~p~  104 (201)
T d2c2la1          66 ELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKE  104 (201)
T ss_dssp             TSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc
Confidence            99999986   3444467788888888888887766664

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.09  E-value=2.2e-10  Score=104.73  Aligned_cols=107  Identities=7%  Similarity=-0.172  Sum_probs=88.8

Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcCC--HHHHHHHHHhh---CcCCcC-----------CCCCHHHHHHH
Q 019586            4 NNYIEAEDAYRRALSIAPDNNKMC-NLGICLMKQGR--IGEAKETLRRV---KPAVAD-----------GPRGVDSHLKA   66 (338)
Q Consensus         4 g~~eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G~--~dEAi~~~~k~---~p~~~d-----------~lg~~deAi~~   66 (338)
                      |.+++|+.+|+++++.+|++..++ ++|.++...++  +++|+..+.++   .|....           ..+.+++|+.+
T Consensus        87 ~~~~~al~~~~~~l~~~pk~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~  166 (334)
T d1dcea1          87 ALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAF  166 (334)
T ss_dssp             HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhCCCcHHHHHHhhHHHHHhccccHHHHHHHHHHHHhhCchhhhhhhhHHHHHHHhccccHHHHHH
Confidence            457899999999999999999977 99999888775  89999999994   444333           37899999999


Q ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCC
Q 019586           67 YERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPC  110 (338)
Q Consensus        67 yekAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~  110 (338)
                      ++++++++|++..+|+++|.++..+|++++|+.++++++++.|.
T Consensus       167 ~~~~i~~~p~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~  210 (334)
T d1dcea1         167 TDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLK  210 (334)
T ss_dssp             HHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHH
T ss_pred             HHHHHHcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhHHH
Confidence            99999999999999999999999999887665555444444443

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.09  E-value=1.7e-10  Score=91.69  Aligned_cols=96  Identities=13%  Similarity=0.080  Sum_probs=82.4

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHhhCcCCcCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHc
Q 019586           27 CNLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQ  106 (338)
Q Consensus        27 ~nLG~~y~~~G~~dEAi~~~~k~~p~~~d~lg~~deAi~~yekAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALk  106 (338)
                      .+.|..+...|+|                     ++|+.+|+++|+++|+++.+|+++|.+|..+|++++|+..|.++++
T Consensus         7 ~~~g~~~~~~g~~---------------------~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~   65 (117)
T d1elwa_           7 KEKGNKALSVGNI---------------------DDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVD   65 (117)
T ss_dssp             HHHHHHHHHTTCH---------------------HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCH---------------------HHHHHHHHHHHhcCCcchhhhhcccccccccccccccchhhhhHHH
Confidence            3778888888888                     5666677779999999999999999999999999999999999999


Q ss_pred             cCCCCcccc---cchhhhcCccHHHHHhhhhcccCCChhh
Q 019586          107 PQPCKDHIL---PTTNAIKTRDDFADENIDSNVDVNPIVL  143 (338)
Q Consensus       107 l~P~~~~~l---~~l~~~~~~~~~A~e~~~~al~~~P~~~  143 (338)
                      ++|.++..+   +.+....++.+.|...+..++..+|...
T Consensus        66 ~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~p~~~  105 (117)
T d1elwa_          66 LKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNP  105 (117)
T ss_dssp             HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCH
T ss_pred             hccchhhHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCH
Confidence            999998833   3346788888889999988888887743

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.06  E-value=3.6e-10  Score=102.24  Aligned_cols=139  Identities=11%  Similarity=0.068  Sum_probs=103.1

Q ss_pred             CCCHHHHHHHHHHHHHhCC------CCHHHH-HHHHHHHHcCCHHHHHHHHHhhC---cCCcC-----------------
Q 019586            3 QNNYIEAEDAYRRALSIAP------DNNKMC-NLGICLMKQGRIGEAKETLRRVK---PAVAD-----------------   55 (338)
Q Consensus         3 ~g~~eeAi~~y~kALeldP------d~a~a~-nLG~~y~~~G~~dEAi~~~~k~~---p~~~d-----------------   55 (338)
                      +|+|++|+.+|.+|+++..      +.+..| ++|.||..+|++++|+.+|+++.   +....                 
T Consensus        50 ~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~  129 (290)
T d1qqea_          50 RKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILEN  129 (290)
T ss_dssp             TTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             CcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHHHHHhHhh
Confidence            6899999999999999842      222344 99999999999999999999832   22211                 


Q ss_pred             CCCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCcccccch----------h
Q 019586           56 GPRGVDSHLKAYERAQQMLKD------LESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDHILPTT----------N  119 (338)
Q Consensus        56 ~lg~~deAi~~yekAL~l~Pd------~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~~l~~l----------~  119 (338)
                      ..+++++|+.+|++|+++.+.      ...++.++|.++..+|+|++|+.+|++++...+.........          .
T Consensus       130 ~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  209 (290)
T d1qqea_         130 DLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQ  209 (290)
T ss_dssp             TTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHHHHHHHHHHHH
Confidence            368999999999999988532      246689999999999999999999999999999876532211          1


Q ss_pred             hhcCccHHHHHhhhhcccCCCh
Q 019586          120 AIKTRDDFADENIDSNVDVNPI  141 (338)
Q Consensus       120 ~~~~~~~~A~e~~~~al~~~P~  141 (338)
                      ...+....+...+......+|.
T Consensus       210 l~~~d~~~A~~~~~~~~~~~~~  231 (290)
T d1qqea_         210 LAATDAVAAARTLQEGQSEDPN  231 (290)
T ss_dssp             HHTTCHHHHHHHHHGGGCC---
T ss_pred             HHhccHHHHHHHHHHHHHhCCC
Confidence            2344455556666666665554

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.05  E-value=7.7e-11  Score=107.80  Aligned_cols=191  Identities=7%  Similarity=-0.153  Sum_probs=129.0

Q ss_pred             CHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHH----------cCCHHHHHHHHHhh---CcCCcC------------CCC
Q 019586            5 NYIEAEDAYRRALSIAPDNNKMC-NLGICLMK----------QGRIGEAKETLRRV---KPAVAD------------GPR   58 (338)
Q Consensus         5 ~~eeAi~~y~kALeldPd~a~a~-nLG~~y~~----------~G~~dEAi~~~~k~---~p~~~d------------~lg   58 (338)
                      ..++|+.+|+++|+++|++..+| .++.++..          .|++++|+.+|+++   .|.++.            ..+
T Consensus        44 ~~~~al~~~~~~l~~~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~pk~~~~~~~~~~~~~~~~~~  123 (334)
T d1dcea1          44 LDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEP  123 (334)
T ss_dssp             CSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSC
T ss_pred             ccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHhhHHHHHhccc
Confidence            35899999999999999999877 55555444          44589999999994   454443            145


Q ss_pred             CHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHHCCCHHHHHHHHHHHHccCCCCcccccc---hhhhcCccH--------
Q 019586           59 GVDSHLKAYERAQQMLKDLESEM-MNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDHILPT---TNAIKTRDD--------  126 (338)
Q Consensus        59 ~~deAi~~yekAL~l~Pd~~~a~-~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~~l~~---l~~~~~~~~--------  126 (338)
                      ++++|+.+++++++++|.+..++ +.+|.++...|++++|+.+++++++++|.+...+..   +....++.+        
T Consensus       124 ~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p~~~~a~~~l~~~~~~~~~~~~A~~~~~~  203 (334)
T d1dcea1         124 NWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRL  203 (334)
T ss_dssp             CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCSS
T ss_pred             cHHHHHHHHHHHHhhCchhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence            69999999999999999999886 567889999999999999999999999998773322   111222211        


Q ss_pred             ----------------------HHHHhhhhcccCCChhhh-----------hhhhhhhhcchHHHHHHhHhHHHHhhchh
Q 019586          127 ----------------------FADENIDSNVDVNPIVLS-----------KHRSVKKLFPTANAIKTQENFADENINAN  173 (338)
Q Consensus       127 ----------------------~A~e~~~~al~~~P~~~~-----------K~~~~~kl~~~~~ai~~~~~~~e~y~nlg  173 (338)
                                            .+...+...+..+|....           .......+..+.+++...|++.+++.++|
T Consensus       204 ~~~~~~~~~~~~~~~~~l~~~~~a~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~  283 (334)
T d1dcea1         204 PENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLM  283 (334)
T ss_dssp             CHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             hHHhHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCcchhhHHHHHHHHHHHHhhHHHHHHHHHHHHhhCchHHHHHHHHH
Confidence                                  122222333333333111           11111122233445666788999999998


Q ss_pred             hhhhHhhhhhhhhhhhhccccccCCC
Q 019586          174 IVVNQTVLAQQRGVQQLAPFGNSWNI  199 (338)
Q Consensus       174 ~~~~~~~~~d~r~~~~~~~~~~~~~~  199 (338)
                      .+.    ....+..+++..+...+.+
T Consensus       284 ~~~----~~~~~~~eA~~~~~~ai~l  305 (334)
T d1dcea1         284 RAL----DPLLYEKETLQYFSTLKAV  305 (334)
T ss_dssp             HHH----CTGGGHHHHHHHHHHHHHH
T ss_pred             HHH----HHCCCHHHHHHHHHHHHHH
Confidence            844    4455555666666666666

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.01  E-value=7.9e-10  Score=91.52  Aligned_cols=96  Identities=11%  Similarity=-0.030  Sum_probs=82.6

Q ss_pred             HHHHHHHHcCCHHHHHHHHHhhCcCCcCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcc
Q 019586           28 NLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQP  107 (338)
Q Consensus        28 nLG~~y~~~G~~dEAi~~~~k~~p~~~d~lg~~deAi~~yekAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl  107 (338)
                      ..|+.|.+.|+|                     ++|+.+|+++++++|+++.+|+++|.+|..+|++++|+.+|++++++
T Consensus        15 ~~gn~~~~~~~y---------------------~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~   73 (159)
T d1a17a_          15 TQANDYFKAKDY---------------------ENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIEL   73 (159)
T ss_dssp             HHHHHHHHTTCH---------------------HHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCH---------------------HHHHHHhhhccccchhhhhhhhhhHHHHHhccccchHHHHHHHHHHH
Confidence            678888888888                     66677777799999999999999999999999999999999999999


Q ss_pred             CCCCcccc---cchhhhcCccHHHHHhhhhcccCCChhhh
Q 019586          108 QPCKDHIL---PTTNAIKTRDDFADENIDSNVDVNPIVLS  144 (338)
Q Consensus       108 ~P~~~~~l---~~l~~~~~~~~~A~e~~~~al~~~P~~~~  144 (338)
                      +|.+...+   +.+....++.+.|...+..++.++|....
T Consensus        74 ~p~~~~a~~~~g~~~~~~g~~~eA~~~~~~a~~~~p~~~~  113 (159)
T d1a17a_          74 DKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKD  113 (159)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHH
T ss_pred             cccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHH
Confidence            99998733   33467888889999999998888886443

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=98.96  E-value=8e-10  Score=87.20  Aligned_cols=86  Identities=13%  Similarity=0.087  Sum_probs=69.2

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHhhCcCCcCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Q 019586           26 MCNLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIW  105 (338)
Q Consensus        26 a~nLG~~y~~~G~~dEAi~~~~k~~p~~~d~lg~~deAi~~yekAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekAL  105 (338)
                      .+++|.++...|++                     ++|+.+|+++++++|+++.+|+++|.++...|++++|+.+|++++
T Consensus        19 ~~~~g~~~~~~g~~---------------------~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al   77 (112)
T d1hxia_          19 PMEEGLSMLKLANL---------------------AEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHAR   77 (112)
T ss_dssp             HHHHHHHHHHTTCH---------------------HHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhh---------------------HHHHHHHhhhcccccccchhhhhhhhhhhhhhhHHHhhccccccc
Confidence            45899999999999                     566667777999999999999999999999999999999999999


Q ss_pred             ccCCCCcccccc---hhhhcCccHHHHHhh
Q 019586          106 QPQPCKDHILPT---TNAIKTRDDFADENI  132 (338)
Q Consensus       106 kl~P~~~~~l~~---l~~~~~~~~~A~e~~  132 (338)
                      +++|.+...+-.   +....+....|.+.+
T Consensus        78 ~~~p~~~~a~~~la~~y~~~g~~~~A~~~l  107 (112)
T d1hxia_          78 MLDPKDIAVHAALAVSHTNEHNANAALASL  107 (112)
T ss_dssp             HHCTTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccccccccchHHHHHHHHHCCCHHHHHHHH
Confidence            999999873322   233444444444443

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.90  E-value=1.2e-09  Score=83.96  Aligned_cols=70  Identities=17%  Similarity=0.069  Sum_probs=57.5

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHhhCcCCcCCCCCHHHHHHHHHHHHHhCC-------CCHHHHHHHHHHHHHCCCHHHHH
Q 019586           26 MCNLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLK-------DLESEMMNKGGDRVEQSRLFDAF   98 (338)
Q Consensus        26 a~nLG~~y~~~G~~dEAi~~~~k~~p~~~d~lg~~deAi~~yekAL~l~P-------d~~~a~~nLG~~l~~lGr~~eAi   98 (338)
                      .|++|.++..+|+|++|+.+                     |++|+++.|       +...+|.+||.++.++|++++|+
T Consensus         8 c~~lG~~~~~~g~y~~A~~~---------------------~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~   66 (95)
T d1tjca_           8 SFELGKVAYTEADYYHTELW---------------------MEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKAL   66 (95)
T ss_dssp             HHHHHHHHHHTTCHHHHHHH---------------------HHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHH---------------------HHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHH
Confidence            45999999999999555555                     455666543       34688999999999999999999


Q ss_pred             HHHHHHHccCCCCccccc
Q 019586           99 LGSSSIWQPQPCKDHILP  116 (338)
Q Consensus        99 ~~yekALkl~P~~~~~l~  116 (338)
                      .+|+++|+++|+++.++.
T Consensus        67 ~~y~~aL~l~P~~~~a~~   84 (95)
T d1tjca_          67 LLTKKLLELDPEHQRANG   84 (95)
T ss_dssp             HHHHHHHHHCTTCHHHHH
T ss_pred             HHHHHHHHhCcCCHHHHH
Confidence            999999999999987443

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.88  E-value=1.3e-09  Score=87.78  Aligned_cols=66  Identities=15%  Similarity=0.089  Sum_probs=60.8

Q ss_pred             HHHHHHHHcCCHHHHHHHHHhhCcCCcCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcc
Q 019586           28 NLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQP  107 (338)
Q Consensus        28 nLG~~y~~~G~~dEAi~~~~k~~p~~~d~lg~~deAi~~yekAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl  107 (338)
                      ++|.+|+..|+|                     ++|+.+|+++|+++|+++.+|+++|.+|..+|+|++|+.+|++++++
T Consensus         9 ~~G~~~~~~~~y---------------------~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l   67 (128)
T d1elra_           9 ELGNDAYKKKDF---------------------DTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEV   67 (128)
T ss_dssp             HHHHHHHHTTCH---------------------HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCH---------------------HHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHh
Confidence            899999999999                     56666777799999999999999999999999999999999999999


Q ss_pred             CCCCccc
Q 019586          108 QPCKDHI  114 (338)
Q Consensus       108 ~P~~~~~  114 (338)
                      +|.+...
T Consensus        68 ~~~~~~~   74 (128)
T d1elra_          68 GRENRED   74 (128)
T ss_dssp             HHHSTTC
T ss_pred             CcccHHH
Confidence            9988763

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.88  E-value=2.4e-09  Score=82.23  Aligned_cols=69  Identities=14%  Similarity=0.093  Sum_probs=58.0

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCC-------HHHH-HHHHHHHHcCCHHHHHHHHHhhCcCCcCCCCCHHHHHHHHHHHHHh
Q 019586            2 QQNNYIEAEDAYRRALSIAPDN-------NKMC-NLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQM   73 (338)
Q Consensus         2 q~g~~eeAi~~y~kALeldPd~-------a~a~-nLG~~y~~~G~~dEAi~~~~k~~p~~~d~lg~~deAi~~yekAL~l   73 (338)
                      ++|+|.+|+.+|++|+++.|.+       +..+ +||.+|.++|++                     ++|+.+|+++|++
T Consensus        17 ~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~---------------------~~A~~~y~~aL~l   75 (95)
T d1tjca_          17 TEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDL---------------------DKALLLTKKLLEL   75 (95)
T ss_dssp             HTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCH---------------------HHHHHHHHHHHHH
T ss_pred             HCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCCh---------------------HHHHHHHHHHHHh
Confidence            5799999999999999996643       3445 999999999999                     5566666779999


Q ss_pred             CCCCHHHHHHHHHHHHHC
Q 019586           74 LKDLESEMMNKGGDRVEQ   91 (338)
Q Consensus        74 ~Pd~~~a~~nLG~~l~~l   91 (338)
                      +|+++.++.|++.+...+
T Consensus        76 ~P~~~~a~~Nl~~~~~~l   93 (95)
T d1tjca_          76 DPEHQRANGNLKYFEYIM   93 (95)
T ss_dssp             CTTCHHHHHHHHHHHHHH
T ss_pred             CcCCHHHHHHHHHHHHHh
Confidence            999999999998876544

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.85  E-value=1.8e-10  Score=113.04  Aligned_cols=114  Identities=8%  Similarity=-0.071  Sum_probs=69.4

Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcCCHHHHHHHHHhhC-cCCcC----------CCCCHHHHHHHHHHHH
Q 019586            4 NNYIEAEDAYRRALSIAPDNNKMC-NLGICLMKQGRIGEAKETLRRVK-PAVAD----------GPRGVDSHLKAYERAQ   71 (338)
Q Consensus         4 g~~eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k~~-p~~~d----------~lg~~deAi~~yekAL   71 (338)
                      +.|+.|+..|.+++.++|++...+ ++|.++...|++++|+..++++. +....          ..+++++|+.+|++|+
T Consensus       100 ~~Y~~ai~~l~~~~~l~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~LG~l~~~~~~~~~A~~~y~~A~  179 (497)
T d1ya0a1         100 GFYTQLLQELCTVFNVDLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYICQHCLVHLGDIARYRNQTSQAESYYRHAA  179 (497)
T ss_dssp             HHHHHHHHHHTC-------------------------------CCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCChhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence            446777777777778889888876 99999999999999999887722 21111          3789999999999999


Q ss_pred             HhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCcccccc
Q 019586           72 QMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDHILPT  117 (338)
Q Consensus        72 ~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~~l~~  117 (338)
                      +++|+++.+|++||.++...|++.+|+.+|.+++.++|..+....+
T Consensus       180 ~l~P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~~~~~~a~~n  225 (497)
T d1ya0a1         180 QLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTN  225 (497)
T ss_dssp             HHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHH
T ss_pred             HHCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHH
Confidence            9999999999999999999999999999999999999988764333

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.75  E-value=1.3e-08  Score=85.03  Aligned_cols=76  Identities=17%  Similarity=0.103  Sum_probs=67.1

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcCCHHHHHHHHHhhCcCCcCCCCCHHHHHHHHHHHHHhCCCCHHH
Q 019586            2 QQNNYIEAEDAYRRALSIAPDNNKMC-NLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDLESE   80 (338)
Q Consensus         2 q~g~~eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k~~p~~~d~lg~~deAi~~yekAL~l~Pd~~~a   80 (338)
                      +.|+|++|+..|.+||+++|+++.+| ++|.+|..+|++                     ++|+.+|++|++++|++..+
T Consensus        89 ~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~---------------------~~A~~~~~~al~l~p~n~~~  147 (169)
T d1ihga1          89 KMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEY---------------------DQALADLKKAQEIAPEDKAI  147 (169)
T ss_dssp             HTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCH---------------------HHHHHHHHHHHHHCTTCHHH
T ss_pred             hhcccchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccCH---------------------HHHHHHHHHHHHhCCCCHHH
Confidence            47999999999999999999999977 999999999999                     55666677799999999999


Q ss_pred             HHHHHHHHHHCCCHHHHH
Q 019586           81 MMNKGGDRVEQSRLFDAF   98 (338)
Q Consensus        81 ~~nLG~~l~~lGr~~eAi   98 (338)
                      +..++.+........++.
T Consensus       148 ~~~l~~~~~~l~~~~~~~  165 (169)
T d1ihga1         148 QAELLKVKQKIKAQKDKE  165 (169)
T ss_dssp             HHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            999999988777666554

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.70  E-value=6.4e-08  Score=82.84  Aligned_cols=82  Identities=12%  Similarity=-0.056  Sum_probs=69.3

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCCHH----------------------HH-HHHHHHHHcCCHHHHHHHHHhhCcCCcCCCC
Q 019586            2 QQNNYIEAEDAYRRALSIAPDNNK----------------------MC-NLGICLMKQGRIGEAKETLRRVKPAVADGPR   58 (338)
Q Consensus         2 q~g~~eeAi~~y~kALeldPd~a~----------------------a~-nLG~~y~~~G~~dEAi~~~~k~~p~~~d~lg   58 (338)
                      ..|++++|+.+|++|+.+.+...-                      ++ ++|.++..+|++                   
T Consensus        23 ~~g~~e~A~~~~~~AL~l~rG~~l~~~~~~~w~~~~r~~l~~~~~~a~~~la~~~~~~g~~-------------------   83 (179)
T d2ff4a2          23 AAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRA-------------------   83 (179)
T ss_dssp             HTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCH-------------------
T ss_pred             HCCCHHHHHHHHHHHHhhCcccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCc-------------------
Confidence            468999999999999999764321                      12 666666666666                   


Q ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Q 019586           59 GVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSI  104 (338)
Q Consensus        59 ~~deAi~~yekAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekA  104 (338)
                        ++|+.+++++++++|.+..+|..++.+|..+|++.+|+.+|+++
T Consensus        84 --~~Al~~~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~  127 (179)
T d2ff4a2          84 --SAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRV  127 (179)
T ss_dssp             --HHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred             --hHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence              77777788899999999999999999999999999999999998

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.68  E-value=7.2e-09  Score=85.54  Aligned_cols=80  Identities=18%  Similarity=0.137  Sum_probs=66.3

Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcCCH----HHHHHHHHhhCcCCcCCCCCHHHHHHHHHHHHHhCCCCH
Q 019586            4 NNYIEAEDAYRRALSIAPDNNKMC-NLGICLMKQGRI----GEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDLE   78 (338)
Q Consensus         4 g~~eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G~~----dEAi~~~~k~~p~~~d~lg~~deAi~~yekAL~l~Pd~~   78 (338)
                      +.+++|+..|++||+++|+++.+| ++|.+|..+|++    .++...              +++|+.+|++|++++|++.
T Consensus        55 ~~~~~Ai~~~~kAl~l~P~~~~a~~~lG~~y~~~g~~~~~~~~~~~~--------------~~~A~~~~~kal~l~P~~~  120 (145)
T d1zu2a1          55 QMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHN--------------FDLATQFFQQAVDEQPDNT  120 (145)
T ss_dssp             HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHH--------------HHHHHHHHHHHHHHCTTCH
T ss_pred             HHHHHHHHHHHHHHHhcchhhHHHhhHHHHHHHcccchhhHHHHHHh--------------HHHhhhhhhcccccCCCHH
Confidence            457899999999999999999977 999999988754    444444              4779999999999999999


Q ss_pred             HHHHHHHHHHHHCCCHHHH
Q 019586           79 SEMMNKGGDRVEQSRLFDA   97 (338)
Q Consensus        79 ~a~~nLG~~l~~lGr~~eA   97 (338)
                      .++..|+.+....+.+.++
T Consensus       121 ~~~~~L~~~~ka~~~~~e~  139 (145)
T d1zu2a1         121 HYLKSLEMTAKAPQLHAEA  139 (145)
T ss_dssp             HHHHHHHHHHTHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            9999999987555544443

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.68  E-value=4.3e-11  Score=117.56  Aligned_cols=94  Identities=9%  Similarity=-0.065  Sum_probs=58.6

Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCcccc---cchhhhcCccHHHHHhhhh
Q 019586           58 RGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDHIL---PTTNAIKTRDDFADENIDS  134 (338)
Q Consensus        58 g~~deAi~~yekAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~~l---~~l~~~~~~~~~A~e~~~~  134 (338)
                      +++++|+..+++++.++|  ..++.++|.++..+|++++|+.+|++|++++|+++..+   +.+....++...|...+..
T Consensus       134 ~~~~~A~~~~~~al~~~~--~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~~~~~~~~Lg~~~~~~~~~~~A~~~y~r  211 (497)
T d1ya0a1         134 THTSAIVKPQSSSCSYIC--QHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCR  211 (497)
T ss_dssp             ---------CCHHHHHHH--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHhCCCH--HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            344555555555554443  35678888888889999999999999999999887733   3335566777777777777


Q ss_pred             cccCCChhhhhhhhhhhhc
Q 019586          135 NVDVNPIVLSKHRSVKKLF  153 (338)
Q Consensus       135 al~~~P~~~~K~~~~~kl~  153 (338)
                      ++..+|....-..++.+++
T Consensus       212 al~~~~~~~~a~~nL~~~~  230 (497)
T d1ya0a1         212 SIAVKFPFPAASTNLQKAL  230 (497)
T ss_dssp             HHSSSBCCHHHHHHHHHHH
T ss_pred             HHhCCCCCHHHHHHHHHHH
Confidence            7776666555444444443

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.67  E-value=4.1e-08  Score=82.50  Aligned_cols=77  Identities=10%  Similarity=0.111  Sum_probs=68.4

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcCCHHHHHHHHHhhCcCCcCCCCCHHHHHHHHHHHHHhCCCCHHH
Q 019586            2 QQNNYIEAEDAYRRALSIAPDNNKMC-NLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDLESE   80 (338)
Q Consensus         2 q~g~~eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k~~p~~~d~lg~~deAi~~yekAL~l~Pd~~~a   80 (338)
                      ++|+|++|+.+|++||.++|++..++ ++|.||..+|+|                     ++|+.+|++|++++|+++.+
T Consensus        74 k~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~---------------------~~A~~~~~~al~l~P~n~~~  132 (170)
T d1p5qa1          74 KLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDF---------------------ELARADFQKVLQLYPNNKAA  132 (170)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH---------------------HHHHHHHHHHHHHCSSCHHH
T ss_pred             hhhhcccccchhhhhhhccccchhhhHHHHHHHHHhhhH---------------------HHHHHHHHHHHHhCCCCHHH
Confidence            57999999999999999999999977 999999999999                     55666677799999999999


Q ss_pred             HHHHHHHHHHCCCHHHHHH
Q 019586           81 MMNKGGDRVEQSRLFDAFL   99 (338)
Q Consensus        81 ~~nLG~~l~~lGr~~eAi~   99 (338)
                      ...++.++...+...+...
T Consensus       133 ~~~l~~~~~~~~~~~~~e~  151 (170)
T d1p5qa1         133 KTQLAVCQQRIRRQLAREK  151 (170)
T ss_dssp             HHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            9999999888877776654

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=98.65  E-value=4.6e-08  Score=80.80  Aligned_cols=111  Identities=17%  Similarity=0.043  Sum_probs=82.0

Q ss_pred             HHHHHHHHcCCHHHHHHHHHhhCcCCcCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcc
Q 019586           28 NLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQP  107 (338)
Q Consensus        28 nLG~~y~~~G~~dEAi~~~~k~~p~~~d~lg~~deAi~~yekAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl  107 (338)
                      ..|..+...|+|.+|+..|+++....+......+.......+.+.     ...|.|+|.+|+++|++++|+.+|++++++
T Consensus        22 ~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~-----~~~~~Nla~~~~~l~~~~~Al~~~~~al~~   96 (153)
T d2fbna1          22 EEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIE-----ISCNLNLATCYNKNKDYPKAIDHASKVLKI   96 (153)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHH-----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhhCcchhhhhhHHHHHhhhhHH-----HHHHhhHHHHHHHhcccchhhhhhhccccc
Confidence            789999999999999999988443333322222333333333333     357899999999999999999999999999


Q ss_pred             CCCCcccc---cchhhhcCccHHHHHhhhhcccCCChhh
Q 019586          108 QPCKDHIL---PTTNAIKTRDDFADENIDSNVDVNPIVL  143 (338)
Q Consensus       108 ~P~~~~~l---~~l~~~~~~~~~A~e~~~~al~~~P~~~  143 (338)
                      +|.+...+   +.+....++.+.|...+..++.++|...
T Consensus        97 ~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~  135 (153)
T d2fbna1          97 DKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNL  135 (153)
T ss_dssp             STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCH
T ss_pred             cchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Confidence            99998733   3335677888888888888877777643

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=98.63  E-value=5.7e-08  Score=84.67  Aligned_cols=112  Identities=17%  Similarity=0.060  Sum_probs=92.7

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCCHH-----HH-HHHHHHHHcCCHHHHHHHHHhhC---cCCcC----------------C
Q 019586            2 QQNNYIEAEDAYRRALSIAPDNNK-----MC-NLGICLMKQGRIGEAKETLRRVK---PAVAD----------------G   56 (338)
Q Consensus         2 q~g~~eeAi~~y~kALeldPd~a~-----a~-nLG~~y~~~G~~dEAi~~~~k~~---p~~~d----------------~   56 (338)
                      ..|++++|+.+|++++++.|++..     ++ ++|.+|..+|++++|+..|+++.   +...+                .
T Consensus        24 ~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~  103 (366)
T d1hz4a_          24 NDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFA  103 (366)
T ss_dssp             HTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHH
Confidence            579999999999999999998643     33 89999999999999999999832   22222                2


Q ss_pred             CCCHHHHHHHHHHHHHhCCC--------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCcc
Q 019586           57 PRGVDSHLKAYERAQQMLKD--------LESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDH  113 (338)
Q Consensus        57 lg~~deAi~~yekAL~l~Pd--------~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~  113 (338)
                      .+++..|+..+.+++.+.+.        ....+..+|.++...|+++.|..+|.+++...+....
T Consensus       104 ~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~  168 (366)
T d1hz4a_         104 QGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQP  168 (366)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCG
T ss_pred             HHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhh
Confidence            78999999999999986432        2356788999999999999999999999998876544

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=98.63  E-value=1.1e-07  Score=86.50  Aligned_cols=115  Identities=13%  Similarity=0.047  Sum_probs=87.3

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcCCHHHHHHHHHhh---CcCCcCC---CCCHHHHHHHHHHHHH-
Q 019586            1 MQQNNYIEAEDAYRRALSIAPDNNKMC-NLGICLMKQGRIGEAKETLRRV---KPAVADG---PRGVDSHLKAYERAQQ-   72 (338)
Q Consensus         1 mq~g~~eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k~---~p~~~d~---lg~~deAi~~yekAL~-   72 (338)
                      ++.|++++|+..|+++++.+|++...+ +||.+|...|+|++|+..|+++   .|.+...   .+..-.+......++. 
T Consensus         7 L~~G~l~eAl~~l~~al~~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll~a~~~~~~a~~~   86 (264)
T d1zbpa1           7 LSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQARKDFAQG   86 (264)
T ss_dssp             TTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred             HHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccccHHHHHH
Confidence            568999999999999999999999977 9999999999999999999994   4444332   1222222223333322 


Q ss_pred             -------hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCcccc
Q 019586           73 -------MLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDHIL  115 (338)
Q Consensus        73 -------l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~~l  115 (338)
                             ..|+....+...+.++...|++++|+..++++.++.|..+..+
T Consensus        87 ~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~p~~~~~~  136 (264)
T d1zbpa1          87 AATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGFLA  136 (264)
T ss_dssp             CCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCCEEE
T ss_pred             hhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCccc
Confidence                   1244446667788899999999999999999999999887743

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=98.58  E-value=1.7e-07  Score=78.21  Aligned_cols=82  Identities=11%  Similarity=0.088  Sum_probs=69.4

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcCCHHHHHHHHHhhCcCCcCCCCCHHHHHHHHHHHHHhCCCCHHH
Q 019586            2 QQNNYIEAEDAYRRALSIAPDNNKMC-NLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDLESE   80 (338)
Q Consensus         2 q~g~~eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k~~p~~~d~lg~~deAi~~yekAL~l~Pd~~~a   80 (338)
                      .+|+|++|+.+|++++.++|++..+| ++|.+|..+|+|                     ++|+.+|+++++++|++..+
T Consensus        76 ~l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~---------------------~~A~~~~~~al~l~P~n~~~  134 (168)
T d1kt1a1          76 KLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEF---------------------ESAKGDFEKVLEVNPQNKAA  134 (168)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH---------------------HHHHHHHHHHHHSCTTCHHH
T ss_pred             HhhhcccchhhhhhhhhcccchHHHHHHHHHHHHHcCCH---------------------HHHHHHHHHHHHhCCCCHHH
Confidence            47899999999999999999999977 999999999999                     55666677799999999999


Q ss_pred             HHHHHHHHHHCCCHHHHH-HHHHHH
Q 019586           81 MMNKGGDRVEQSRLFDAF-LGSSSI  104 (338)
Q Consensus        81 ~~nLG~~l~~lGr~~eAi-~~yekA  104 (338)
                      +..++.+....+.+.+.. ..|.+.
T Consensus       135 ~~~l~~~~~~~~~~~e~~kk~~~~~  159 (168)
T d1kt1a1         135 RLQIFMCQKKAKEHNERDRRTYANM  159 (168)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHH
Confidence            999999988877765533 344443

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.56  E-value=2.6e-07  Score=83.51  Aligned_cols=137  Identities=10%  Similarity=-0.025  Sum_probs=87.6

Q ss_pred             CHHHHHHHHHHHHHh-CCCCHHHH-HHHHHHHHcCCHHHHHHHHHhhCcCCcC--------------CCCCHHHHHHHHH
Q 019586            5 NYIEAEDAYRRALSI-APDNNKMC-NLGICLMKQGRIGEAKETLRRVKPAVAD--------------GPRGVDSHLKAYE   68 (338)
Q Consensus         5 ~~eeAi~~y~kALel-dPd~a~a~-nLG~~y~~~G~~dEAi~~~~k~~p~~~d--------------~lg~~deAi~~ye   68 (338)
                      .+++|...|++|++. .|.+...| .++.++..+|++++|...|+++....+.              ..++++.|...|+
T Consensus        79 ~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~  158 (308)
T d2onda1          79 FSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFK  158 (308)
T ss_dssp             HHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHH
Confidence            456777777777764 56666655 7777777777777777777773322221              1457777777777


Q ss_pred             HHHHhCCCCHHHHHHHHHHHH-HCCCHHHHHHHHHHHHccCCCCcccc---cchhhhcCccHHHHHhhhhcccCCCh
Q 019586           69 RAQQMLKDLESEMMNKGGDRV-EQSRLFDAFLGSSSIWQPQPCKDHIL---PTTNAIKTRDDFADENIDSNVDVNPI  141 (338)
Q Consensus        69 kAL~l~Pd~~~a~~nLG~~l~-~lGr~~eAi~~yekALkl~P~~~~~l---~~l~~~~~~~~~A~e~~~~al~~~P~  141 (338)
                      ++++..|.....|...+.... ..|+.+.|..+|+++++..|.++.+.   .......+..+-+...+..++...|.
T Consensus       159 ~al~~~~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~  235 (308)
T d2onda1         159 KAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSL  235 (308)
T ss_dssp             HHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSS
T ss_pred             HHHHhCCCcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Confidence            777777777777777766543 35677777777777777777766522   11123455555566666666665543

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.52  E-value=1.2e-07  Score=85.10  Aligned_cols=112  Identities=13%  Similarity=0.035  Sum_probs=87.3

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCCH------HHH-HHHHHHHH-cCCHHHHHHHHHhhCc---CCcC---------------
Q 019586            2 QQNNYIEAEDAYRRALSIAPDNN------KMC-NLGICLMK-QGRIGEAKETLRRVKP---AVAD---------------   55 (338)
Q Consensus         2 q~g~~eeAi~~y~kALeldPd~a------~a~-nLG~~y~~-~G~~dEAi~~~~k~~p---~~~d---------------   55 (338)
                      +.|++++|+.+|++++++.+...      ..+ ++|.+|.. .|++++|+.+|+++..   ....               
T Consensus        89 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~  168 (290)
T d1qqea_          89 SGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLK  168 (290)
T ss_dssp             HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHH
Confidence            46899999999999999865442      233 99988865 6999999999999322   1111               


Q ss_pred             -CCCCHHHHHHHHHHHHHhCCCCH-------HHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCcc
Q 019586           56 -GPRGVDSHLKAYERAQQMLKDLE-------SEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDH  113 (338)
Q Consensus        56 -~lg~~deAi~~yekAL~l~Pd~~-------~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~  113 (338)
                       .+|++++|+.+|++++.+.+...       ..+.+.|.++...|++..|..+++++++++|....
T Consensus       169 ~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~  234 (290)
T d1qqea_         169 ALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFAD  234 (290)
T ss_dssp             HHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC------
T ss_pred             HHcChHHHHHHHHHHHHHhCccchhhhhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCccc
Confidence             28999999999999999987765       45678999999999999999999999999997654

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.41  E-value=1.8e-06  Score=77.83  Aligned_cols=112  Identities=8%  Similarity=0.063  Sum_probs=99.5

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCCHH-HH-HHHHHHHHcCCHHHHHHHHHhhCcCCcC--------------CCCCHHHHHH
Q 019586            2 QQNNYIEAEDAYRRALSIAPDNNK-MC-NLGICLMKQGRIGEAKETLRRVKPAVAD--------------GPRGVDSHLK   65 (338)
Q Consensus         2 q~g~~eeAi~~y~kALeldPd~a~-a~-nLG~~y~~~G~~dEAi~~~~k~~p~~~d--------------~lg~~deAi~   65 (338)
                      .+|++++|+..|+++++..|.+.. .| .++.+....|++++|+..|+++....+.              ..++.+.|..
T Consensus       111 ~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~al~~~~~~~~~~~~~a~~e~~~~~~~~~a~~  190 (308)
T d2onda1         111 SRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFK  190 (308)
T ss_dssp             HTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHH
T ss_pred             hcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhccCHHHHHH
Confidence            368999999999999999997755 55 9999999999999999999995444433              2579999999


Q ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCcc
Q 019586           66 AYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDH  113 (338)
Q Consensus        66 ~yekAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~  113 (338)
                      +|++++...|+.+..|..++..+...|+++.|...|+++++..|.++.
T Consensus       191 i~e~~l~~~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~~~  238 (308)
T d2onda1         191 IFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPE  238 (308)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGG
T ss_pred             HHHHHHHhhhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChH
Confidence            999999999999999999999999999999999999999998887665

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.35  E-value=2.2e-07  Score=74.69  Aligned_cols=83  Identities=8%  Similarity=-0.041  Sum_probs=67.4

Q ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHccCCCCcc-----cccchhhhcCccHHHHHhh
Q 019586           61 DSHLKAYERAQQMLKDLESEMMNKGGDRVEQSR---LFDAFLGSSSIWQPQPCKDH-----ILPTTNAIKTRDDFADENI  132 (338)
Q Consensus        61 deAi~~yekAL~l~Pd~~~a~~nLG~~l~~lGr---~~eAi~~yekALkl~P~~~~-----~l~~l~~~~~~~~~A~e~~  132 (338)
                      ++|.+.|++++.++|+++.+++++|.++...++   +.+|+..|+++++.+|....     .++......|+.+.|...+
T Consensus        16 ~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y~~~g~~~~A~~~~   95 (122)
T d1nzna_          16 LKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYV   95 (122)
T ss_dssp             HHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence            667777888999999999999999999987554   55799999999999886532     2344467888889999999


Q ss_pred             hhcccCCChhh
Q 019586          133 DSNVDVNPIVL  143 (338)
Q Consensus       133 ~~al~~~P~~~  143 (338)
                      ..++.++|...
T Consensus        96 ~~aL~~~P~~~  106 (122)
T d1nzna_          96 RGLLQTEPQNN  106 (122)
T ss_dssp             HHHHHHCTTCH
T ss_pred             HHHHHhCcCCH
Confidence            88888777643

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=98.18  E-value=9e-07  Score=72.64  Aligned_cols=65  Identities=6%  Similarity=-0.039  Sum_probs=50.4

Q ss_pred             HHHHHHHHcCCHHHHHHHHHhhCcCCcCCCCCHHHHHHHHHHHHHhCCCC------------HHHHHHHHHHHHHCCCHH
Q 019586           28 NLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDL------------ESEMMNKGGDRVEQSRLF   95 (338)
Q Consensus        28 nLG~~y~~~G~~dEAi~~~~k~~p~~~d~lg~~deAi~~yekAL~l~Pd~------------~~a~~nLG~~l~~lGr~~   95 (338)
                      ..|..+...|+|+                     +|+..|++||++.|+.            ..+|.++|.+|..+|+++
T Consensus        14 ~~g~~~~~~g~y~---------------------~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~   72 (156)
T d2hr2a1          14 SDAQRQLVAGEYD---------------------EAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFD   72 (156)
T ss_dssp             HHHHHHHHHTCHH---------------------HHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHcCCHH---------------------HHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccc
Confidence            4477777888885                     4555555577776654            367899999999999999


Q ss_pred             HHHHHHHHHHccCCCCcc
Q 019586           96 DAFLGSSSIWQPQPCKDH  113 (338)
Q Consensus        96 eAi~~yekALkl~P~~~~  113 (338)
                      +|+.+|++++++.|....
T Consensus        73 ~A~~~~~~al~~~~~~~~   90 (156)
T d2hr2a1          73 EALHSADKALHYFNRRGE   90 (156)
T ss_dssp             HHHHHHHHHHHHHHHHCC
T ss_pred             hhhHhhhhhhhccccccc
Confidence            999999999998775433

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=98.15  E-value=2.4e-06  Score=73.98  Aligned_cols=108  Identities=12%  Similarity=-0.007  Sum_probs=84.7

Q ss_pred             CCCHHHHHHHHHHHHHhCCCC---HH----HH-HHHHHHHHcCCHHHHHHHHHhhCcCCcC-----------------CC
Q 019586            3 QNNYIEAEDAYRRALSIAPDN---NK----MC-NLGICLMKQGRIGEAKETLRRVKPAVAD-----------------GP   57 (338)
Q Consensus         3 ~g~~eeAi~~y~kALeldPd~---a~----a~-nLG~~y~~~G~~dEAi~~~~k~~p~~~d-----------------~l   57 (338)
                      .+++.++...+.+++.+....   ..    .+ .+|.++...|++++|..+++++....+.                 ..
T Consensus       185 ~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~  264 (366)
T d1hz4a_         185 RGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILL  264 (366)
T ss_dssp             HTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHT
T ss_pred             hhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHc
Confidence            366778888888887764321   11    22 7889999999999999999995433222                 27


Q ss_pred             CCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCC
Q 019586           58 RGVDSHLKAYERAQQM------LKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPC  110 (338)
Q Consensus        58 g~~deAi~~yekAL~l------~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~  110 (338)
                      |++++|+..|++++.+      .|+...+|..+|.+|..+|++++|+.+|++++++.+.
T Consensus       265 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~l~~~  323 (366)
T d1hz4a_         265 GEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANR  323 (366)
T ss_dssp             TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhh
Confidence            8999999999999854      3556788999999999999999999999999987554

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.91  E-value=2.2e-05  Score=63.65  Aligned_cols=70  Identities=7%  Similarity=-0.040  Sum_probs=62.6

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHhhCcCCcCCCCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHCCCHHHHHHHHHHH
Q 019586           26 MCNLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDLE-SEMMNKGGDRVEQSRLFDAFLGSSSI  104 (338)
Q Consensus        26 a~nLG~~y~~~G~~dEAi~~~~k~~p~~~d~lg~~deAi~~yekAL~l~Pd~~-~a~~nLG~~l~~lGr~~eAi~~yekA  104 (338)
                      -+++|+++.+..+.+.                  .++|+..|+++++.+|... +++++||..|.++|+|++|..+++++
T Consensus        38 ~F~YAw~Lv~S~~~~d------------------~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~   99 (124)
T d2pqrb1          38 RFNYAWGLIKSTDVND------------------ERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTL   99 (124)
T ss_dssp             HHHHHHHHHHSSCHHH------------------HHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCcHHH------------------HHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            4599999998877643                  3789999999999999775 89999999999999999999999999


Q ss_pred             HccCCCCcc
Q 019586          105 WQPQPCKDH  113 (338)
Q Consensus       105 Lkl~P~~~~  113 (338)
                      |+++|.+..
T Consensus       100 L~ieP~n~q  108 (124)
T d2pqrb1         100 FEHERNNKQ  108 (124)
T ss_dssp             HHHCTTCHH
T ss_pred             HccCCCcHH
Confidence            999999977

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=97.81  E-value=1.3e-05  Score=72.40  Aligned_cols=121  Identities=7%  Similarity=-0.196  Sum_probs=79.9

Q ss_pred             CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCcccccch---hhhcCccHHHHHhhh
Q 019586           57 PRGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQPQPCKDHILPTT---NAIKTRDDFADENID  133 (338)
Q Consensus        57 lg~~deAi~~yekAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALkl~P~~~~~l~~l---~~~~~~~~~A~e~~~  133 (338)
                      .|++++|+..|+++++.+|+++.++.+||.+|...|++++|+.+|+++++++|++......+   ....+....+.....
T Consensus         9 ~G~l~eAl~~l~~al~~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll~a~~~~~~a~~~~~   88 (264)
T d1zbpa1           9 EGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQARKDFAQGAA   88 (264)
T ss_dssp             TTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHTTSCC
T ss_pred             CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccccHHHHHHhh
Confidence            57889999999999999999999999999999999999999999999999999887633221   111111111111222


Q ss_pred             hc-ccCCChhhh----hhhhhhhhcchHHHHHHhHhHHHHhhchhhhhh
Q 019586          134 SN-VDVNPIVLS----KHRSVKKLFPTANAIKTQENFADENINANIVVN  177 (338)
Q Consensus       134 ~a-l~~~P~~~~----K~~~~~kl~~~~~ai~~~~~~~e~y~nlg~~~~  177 (338)
                      .. +..+|....    .............|+.......+...+.+...+
T Consensus        89 ~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~p~~~~~~~  137 (264)
T d1zbpa1          89 TAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGFLAN  137 (264)
T ss_dssp             CEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCCEEET
T ss_pred             hhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCcccc
Confidence            22 222343222    122223445556677777777777766665543

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.77  E-value=1e-05  Score=68.66  Aligned_cols=108  Identities=11%  Similarity=0.054  Sum_probs=81.3

Q ss_pred             HHHHHHHHcCCHHHHHHHHHhhCcCCcC-CCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHc
Q 019586           28 NLGICLMKQGRIGEAKETLRRVKPAVAD-GPRGVDSHLKAYERAQQMLKDLESEMMNKGGDRVEQSRLFDAFLGSSSIWQ  106 (338)
Q Consensus        28 nLG~~y~~~G~~dEAi~~~~k~~p~~~d-~lg~~deAi~~yekAL~l~Pd~~~a~~nLG~~l~~lGr~~eAi~~yekALk  106 (338)
                      +.|..+...|++++|+..|.++...+.. .+.++....-.+.+...+.+....++.+++.++..+|++++|+.+++++++
T Consensus        16 ~~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~~~~~w~~~~r~~l~~~~~~a~~~la~~~~~~g~~~~Al~~~~~al~   95 (179)
T d2ff4a2          16 TAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELEALTF   95 (179)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHhhCcccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHH
Confidence            8999999999999999999995443332 111222222234455667777889999999999999999999999999999


Q ss_pred             cCCCCcccccc---hhhhcCccHHHHHhhhhc
Q 019586          107 PQPCKDHILPT---TNAIKTRDDFADENIDSN  135 (338)
Q Consensus       107 l~P~~~~~l~~---l~~~~~~~~~A~e~~~~a  135 (338)
                      ++|.+...+..   .....|+...|...+...
T Consensus        96 ~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~  127 (179)
T d2ff4a2          96 EHPYREPLWTQLITAYYLSDRQSDALGAYRRV  127 (179)
T ss_dssp             HSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred             hCCccHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence            99998874433   256778888777666554

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=97.74  E-value=7.1e-05  Score=59.48  Aligned_cols=99  Identities=11%  Similarity=0.035  Sum_probs=77.1

Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHcCCHHHHHHHHHh-hCcCCcC--------------CCCCHHHHHHHH
Q 019586            4 NNYIEAEDAYRRALSIAPDNNKMC-NLGICLMKQGRIGEAKETLRR-VKPAVAD--------------GPRGVDSHLKAY   67 (338)
Q Consensus         4 g~~eeAi~~y~kALeldPd~a~a~-nLG~~y~~~G~~dEAi~~~~k-~~p~~~d--------------~lg~~deAi~~y   67 (338)
                      .++++|+.+|++|.+.+  +..++ +||.  ....++++|+.+|++ +...++.              ...++++|+.+|
T Consensus         7 kd~~~A~~~~~kaa~~g--~~~a~~~l~~--~~~~~~~~a~~~~~~aa~~g~~~a~~~Lg~~y~~g~~~~~d~~~A~~~~   82 (133)
T d1klxa_           7 KDLKKAIQYYVKACELN--EMFGCLSLVS--NSQINKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDLRKAAQYY   82 (133)
T ss_dssp             HHHHHHHHHHHHHHHTT--CTTHHHHHHT--CTTSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHCC--Chhhhhhhcc--ccccCHHHHHHHHhhhhcccchhhhhhHHHhhhhccccchhhHHHHHHH
Confidence            47899999999999875  33333 6664  456788999999998 3334443              245889999999


Q ss_pred             HHHHHhCCCCHHHHHHHHHHHHH----CCCHHHHHHHHHHHHccC
Q 019586           68 ERAQQMLKDLESEMMNKGGDRVE----QSRLFDAFLGSSSIWQPQ  108 (338)
Q Consensus        68 ekAL~l~Pd~~~a~~nLG~~l~~----lGr~~eAi~~yekALkl~  108 (338)
                      +++.+.  .++.+.++||.+|..    ..++.+|+.+|++|.+..
T Consensus        83 ~~aa~~--g~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G  125 (133)
T d1klxa_          83 SKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG  125 (133)
T ss_dssp             HHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred             hhhhcc--CcchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCC
Confidence            999875  579999999999987    568999999999987653

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=97.45  E-value=0.001  Score=57.12  Aligned_cols=45  Identities=18%  Similarity=0.469  Sum_probs=37.8

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHH----cCCHHHHHHHHHh
Q 019586            2 QQNNYIEAEDAYRRALSIAPDNNKMC-NLGICLMK----QGRIGEAKETLRR   48 (338)
Q Consensus         2 q~g~~eeAi~~y~kALeldPd~a~a~-nLG~~y~~----~G~~dEAi~~~~k   48 (338)
                      +.+++++|+.+|++|.+.  ++..++ +||.+|..    ..++..|..++++
T Consensus        14 ~~~d~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~   63 (265)
T d1ouva_          14 KEKDFTQAKKYFEKACDL--KENSGCFNLGVLYYQGQGVEKNLKKAASFYAK   63 (265)
T ss_dssp             HTTCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHH
T ss_pred             HCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCcchhHHHHHHhhcc
Confidence            368999999999999876  467766 99999987    6688888888887

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.07  E-value=0.00088  Score=53.90  Aligned_cols=64  Identities=11%  Similarity=-0.037  Sum_probs=51.7

Q ss_pred             CCHHHHHHHHHHHHHhCCCCH-H-HHHHHHHHHHcCCHHHHHHHHHhhCcCCcCCCCCHHHHHHHHHHHHHhCCCCHHHH
Q 019586            4 NNYIEAEDAYRRALSIAPDNN-K-MCNLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDLESEM   81 (338)
Q Consensus         4 g~~eeAi~~y~kALeldPd~a-~-a~nLG~~y~~~G~~dEAi~~~~k~~p~~~d~lg~~deAi~~yekAL~l~Pd~~~a~   81 (338)
                      .+..+||.+++.++..+|.+. + +|+||.+|.++|+|                     ++|..+++++|+++|++..+.
T Consensus        52 ~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy---------------------~~A~~~~~~~L~ieP~n~qA~  110 (124)
T d2pqrb1          52 NDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEY---------------------SMAKRYVDTLFEHERNNKQVG  110 (124)
T ss_dssp             HHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCH---------------------HHHHHHHHHHHHHCTTCHHHH
T ss_pred             HHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhH---------------------HHHHHHHHHHHccCCCcHHHH
Confidence            356899999999999999775 4 45999999999999                     556666677999999999887


Q ss_pred             HHHHHHH
Q 019586           82 MNKGGDR   88 (338)
Q Consensus        82 ~nLG~~l   88 (338)
                      ...-.+.
T Consensus       111 ~L~~~Ie  117 (124)
T d2pqrb1         111 ALKSMVE  117 (124)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            6555443

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=96.42  E-value=0.012  Score=49.90  Aligned_cols=85  Identities=13%  Similarity=0.038  Sum_probs=62.0

Q ss_pred             HHHH-HHHHHHHHcCCHHHHHHHHHhh-CcCCcC--------------CCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 019586           24 NKMC-NLGICLMKQGRIGEAKETLRRV-KPAVAD--------------GPRGVDSHLKAYERAQQMLKDLESEMMNKGGD   87 (338)
Q Consensus        24 a~a~-nLG~~y~~~G~~dEAi~~~~k~-~p~~~d--------------~lg~~deAi~~yekAL~l~Pd~~~a~~nLG~~   87 (338)
                      +.++ +||..+...+++.+|+.+|+++ ...+++              ...++..|..+++++..  ..++.++.++|.+
T Consensus         2 p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~--~~~~~a~~~l~~~   79 (265)
T d1ouva_           2 PKELVGLGAKSYKEKDFTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACD--LNYSNGCHLLGNL   79 (265)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH--TTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcchhHHHHHHhhccccc--ccccchhhccccc
Confidence            4544 9999999999999999999883 233333              14477888888888765  4477888888877


Q ss_pred             HHH----CCCHHHHHHHHHHHHccCCC
Q 019586           88 RVE----QSRLFDAFLGSSSIWQPQPC  110 (338)
Q Consensus        88 l~~----lGr~~eAi~~yekALkl~P~  110 (338)
                      +..    .++...|..+|+.+....+.
T Consensus        80 ~~~~~~~~~~~~~a~~~~~~a~~~g~~  106 (265)
T d1ouva_          80 YYSGQGVSQNTNKALQYYSKACDLKYA  106 (265)
T ss_dssp             HHHTSSSCCCHHHHHHHHHHHHHTTCH
T ss_pred             cccccccchhhHHHHHHHhhhhhhhhh
Confidence            765    46778888888887766543

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=95.42  E-value=0.033  Score=43.19  Aligned_cols=69  Identities=9%  Similarity=-0.078  Sum_probs=55.8

Q ss_pred             CHHHHHHHHHh-hCcCCcC--------CCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----CCCHHHHHHHHHHH
Q 019586           38 RIGEAKETLRR-VKPAVAD--------GPRGVDSHLKAYERAQQMLKDLESEMMNKGGDRVE----QSRLFDAFLGSSSI  104 (338)
Q Consensus        38 ~~dEAi~~~~k-~~p~~~d--------~lg~~deAi~~yekAL~l~Pd~~~a~~nLG~~l~~----lGr~~eAi~~yekA  104 (338)
                      ++++|+.+|++ +.-.++.        ...+.++|+.+|+++.+.  .++.++++||.+|..    ..++.+|+.+|+++
T Consensus         8 d~~~A~~~~~kaa~~g~~~a~~~l~~~~~~~~~~a~~~~~~aa~~--g~~~a~~~Lg~~y~~g~~~~~d~~~A~~~~~~a   85 (133)
T d1klxa_           8 DLKKAIQYYVKACELNEMFGCLSLVSNSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKA   85 (133)
T ss_dssp             HHHHHHHHHHHHHHTTCTTHHHHHHTCTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHCCChhhhhhhccccccCHHHHHHHHhhhhcc--cchhhhhhHHHhhhhccccchhhHHHHHHHhhh
Confidence            67889999988 3333333        256899999999999874  689999999999987    56789999999999


Q ss_pred             HccC
Q 019586          105 WQPQ  108 (338)
Q Consensus       105 Lkl~  108 (338)
                      .+..
T Consensus        86 a~~g   89 (133)
T d1klxa_          86 CGLN   89 (133)
T ss_dssp             HHTT
T ss_pred             hccC
Confidence            8764

>d2crba1 a.7.16.1 (A:8-90) Nuclear receptor binding factor 2, NRBF2, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: MIT domain-like
family: MIT domain
domain: Nuclear receptor binding factor 2, NRBF2, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=85.05  E-value=1.1  Score=32.69  Aligned_cols=42  Identities=17%  Similarity=0.181  Sum_probs=35.2

Q ss_pred             HHHHHHHHcCCHHHHHHHHHhhCcCCcCCCCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 019586           28 NLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDLESEMMNK   84 (338)
Q Consensus        28 nLG~~y~~~G~~dEAi~~~~k~~p~~~d~lg~~deAi~~yekAL~l~Pd~~~a~~nL   84 (338)
                      ..+.-+.+.|+|++||+++++              |..++.+|+++ +....++..|
T Consensus        13 RrAer~l~~~rydeAIech~k--------------A~~yl~eA~kl-t~s~~~l~SL   54 (83)
T d2crba1          13 RRADRLLAAGKYEEAISCHRK--------------ATTYLSEAMKL-TESEQAHLSL   54 (83)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHH--------------HHHHHHHHHTT-CCCHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHH--------------HHHHHHHHHhC-CCcHHHHHHH
Confidence            677788999999999999955              89999999998 6677776544

>d1wfda_ a.7.14.1 (A:) Hypothetical protein 1500032H18Rik {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: MIT domain
family: MIT domain
domain: Hypothetical protein 1500032H18Rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=83.22  E-value=2.4  Score=31.00  Aligned_cols=46  Identities=15%  Similarity=0.128  Sum_probs=35.2

Q ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHcCCHHHHHHHHHhhCcCCcCCCCCHHHHHHHHHHHHHhCCCCH
Q 019586            5 NYIEAEDAYRRALSIAPDNNKMCNLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDLE   78 (338)
Q Consensus         5 ~~eeAi~~y~kALeldPd~a~a~nLG~~y~~~G~~dEAi~~~~k~~p~~~d~lg~~deAi~~yekAL~l~Pd~~   78 (338)
                      +...|+.+..+|++              +-..|+|++|+.+|              .+|+..|..++...|+..
T Consensus        11 ~~~~A~~l~~~Av~--------------~D~~g~y~eA~~~Y--------------~~aie~l~~~~~~e~~~~   56 (93)
T d1wfda_          11 DSTAAVAVLKRAVE--------------LDAESRYQQALVCY--------------QEGIDMLLQVLKGTKESS   56 (93)
T ss_dssp             HHHHHHHHHHHHHH--------------HHHTTCHHHHHHHH--------------HHHHHHHHHHHHTCCCHH
T ss_pred             HHHHHHHHHHHHHH--------------HHHcCCHHHHHHHH--------------HHHHHHHHHHhhccCCHH
Confidence            45566666666655              46889999999999              458999999999887654