Citrus Sinensis ID: 019591

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------34
MASPYRDRTAEFRSLSQTLKKIGGATTAVDQPNNSFVSPKPPNPASSRSEFNKKASRIGLGIHEASQKIARLAKLAKRSSMFDDPIVEIQELTALIKDDITALNMALSDLQTLQNLEIVEGNYSQDRVVHSTTVCDDLKSKLMGATKELQDVLTTRTENIKAHESRKQIFSANALRDSPFRQHAQPVTEPPPWSSPVNASESSQPSALPPGGVQVGNQLRRRPAVDNAPSHHMEMSMLQQVVPRQENYSQSRAVALHNVESTITELGGIFTHLATMVAQQGELAIRIDDNMDESLANVEGARNALLRHLNQISSNRWLMIKIFAVIIFFLTVFMFFVA
ccccccccHHHHHHHHHHHHHHcccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHc
ccccccccHHHHHHHHHHHHHHccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHc
maspyrdrTAEFRSLSQTLKKIggattavdqpnnsfvspkppnpassrsefNKKASRIGLGIHEASQKIARLAKLAkrssmfddpIVEIQELTALIKDDITALNMALSDLQTLQNLEIvegnysqdrvvHSTTVCDDLKSKLMGATKELQDVLTTRTENIKAHESRKQIFsanalrdspfrqhaqpvtepppwsspvnasessqpsalppggvqvgnqlrrrpavdnapshhmEMSMLQQvvprqenysqSRAVALHNVESTITELGGIFTHLATMVAQQGELAIRIDDNMDESLANVEGARNALLRHLNQISSNRWLMIKIFAVIIFFLTVFMFFVA
maspyrdrtaeFRSLSQTLKKIGGattavdqpnnsfvspkppnpassRSEFNKKASRIGLGIHEASQKIARLAKLAKRSSMFDDPIVEIQELTALIKDDITALNMALSDLQTLQNLEIVEgnysqdrvvHSTTVCDDLKSKLMGATKELQDVLTTRtenikahesrkQIFSANALRDSPFRQHAQPVTEPPPWSSPVNASESSQPSALPPGGVQVGNQLRRRPAVDNAPSHHMEMSMLQQVVPRQENYSQSRAVALHNVESTITELGGIFTHLATMVAQQGELAIRIDDNMDESLANVEGARNALLRHLNQISSNRWLMIKIFAVIIFFLTVFMFFVA
MASPYRDRTAEFRSLSQTLKKIGGATTAVDQPNNSFVSPKPPNPASSRSEFNKKASRIGLGIHEASQKIARLAKLAKRSSMFDDPIVEIQELTALIKDDITALNMALSDLQTLQNLEIVEGNYSQDRVVHSTTVCDDLKSKLMGATKELQDVLTTRTENIKAHESRKQIFSANALRDSPFRQHAQPVTEPPPWSSPVNASESSQPSALPPGGVQVGNQLRRRPAVDNAPSHHMEMSMLQQVVPRQENYSQSRAVALHNVESTITELGGIFTHLATMVAQQGELAIRIDDNMDESLANVEGARNALLRHLNQISSNRWLMIKIFAVIIFFLTVFMFFVA
************************************************************GI*****KIARLAKLAKRSSMFDDPIVEIQELTALIKDDITALNMALSDLQTLQNLEIVEGNYSQDRVVHSTTVCDDLKSKLMGATK*L**V****************************************************************************************************AVALHNVESTITELGGIFTHLATMVAQQGELAIRIDDNMDESLANVEGARNALLRHLNQISSNRWLMIKIFAVIIFFLTVFMFFV*
*ASPYRDRTAEFRSL*************************************************************************I*ELTALIKDDITALNM*********************************KSK********************************************************************************************************************NVESTITELGGIFTHLATMVAQQGELAIRIDDNMDESLANVEGARNALLRHLNQISSNRWLMIKIFAVIIFFLTVFMFFVA
***********FRSLSQTLKKIGGATTAVDQPNNSFV**************NKKASRIGLGIHEASQKIARLAKLAKRSSMFDDPIVEIQELTALIKDDITALNMALSDLQTLQNLEIVEGNYSQDRVVHSTTVCDDLKSKLMGATKELQDVLTTRTENIKAHESRKQIFSANALRDSPFRQ***************************PGGVQVGNQLRRRPAVDNAPSHHMEMSMLQQVVPRQENYSQSRAVALHNVESTITELGGIFTHLATMVAQQGELAIRIDDNMDESLANVEGARNALLRHLNQISSNRWLMIKIFAVIIFFLTVFMFFVA
***********FRSLSQTLKKI*************************RSEFNKKASRIGLGIHEASQKIARLAKLAKRSSMFDDPIVEIQELTALIKDDITALNMALSDLQTLQNLE************HSTTVCDDLKSKLMGATKELQDVLTTRTENIKAHESRK****************************************************************HMEMSMLQQVVPRQENYSQSRAVALHNVESTITELGGIFTHLATMVAQQGELAIRIDDNMDESLANVEGARNALLRHLNQISSNRWLMIKIFAVIIFFLTVFMFFVA
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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooo
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MASPYRDRTAEFRSLSQTLKKIGGATTAVDQPNNSFVSPKPPNPASSRSEFNKKASRIGLGIHEASQKIARLAKLAKRSSMFDDPIVEIQELTALIKDDITALNMALSDLQTLQNLEIVEGNYSQDRVVHSTTVCDDLKSKLMGATKELQDVLTTRTENIKAHESRKQIFSANALRDSPFRQHAQPVTEPPPWSSPVNASESSQPSALPPGGVQVGNQLRRRPAVDNAPSHHMEMSMLQQVVPRQENYSQSRAVALHNVESTITELGGIFTHLATMVAQQGELAIRIDDNMDESLANVEGARNALLRHLNQISSNRWLMIKIFAVIIFFLTVFMFFVA
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query338 2.2.26 [Sep-21-2011]
Q9FFK1336 Syntaxin-31 OS=Arabidopsi yes no 0.988 0.994 0.691 1e-121
Q9LK09347 Syntaxin-32 OS=Arabidopsi no no 0.958 0.933 0.511 2e-79
O13644309 Integral membrane protein yes no 0.893 0.977 0.326 1e-38
Q08DB5355 Syntaxin-5 OS=Bos taurus yes no 0.813 0.774 0.357 3e-38
Q13190355 Syntaxin-5 OS=Homo sapien yes no 0.813 0.774 0.354 6e-38
Q8K1E0355 Syntaxin-5 OS=Mus musculu yes no 0.810 0.771 0.349 9e-37
Q08851355 Syntaxin-5 OS=Rattus norv no no 0.810 0.771 0.349 2e-36
Q24509467 Syntaxin-5 OS=Drosophila yes no 0.860 0.623 0.340 2e-35
Q20797413 Putative syntaxin-3 OS=Ca yes no 0.852 0.697 0.310 1e-33
Q01590340 Integral membrane protein yes no 0.890 0.885 0.303 7e-26
>sp|Q9FFK1|SYP31_ARATH Syntaxin-31 OS=Arabidopsis thaliana GN=SYP31 PE=1 SV=1 Back     alignment and function desciption
 Score =  436 bits (1121), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 235/340 (69%), Positives = 271/340 (79%), Gaps = 6/340 (1%)

Query: 1   MASPYRDRTAEFRSLSQTLKKIGGATTAVDQPNNSFVSPKPPNPASSRSEFNKKASRIGL 60
           M S +RDRT E  SLSQTLKKIG A  +V Q  +   S K  +P S   EFNKKASRIGL
Sbjct: 1   MGSTFRDRTVELHSLSQTLKKIG-AIPSVHQDEDDPASSKRSSPGS---EFNKKASRIGL 56

Query: 61  GIHEASQKIARLAKLAKRSSMFDDPIVEIQELTALIKDDITALNMALSDLQTLQNLEIVE 120
           GI E SQKI RLAKLAK+S++F+D  VEIQELT LI++DIT LNMALSDLQTLQN+E+ +
Sbjct: 57  GIKETSQKITRLAKLAKQSTIFNDRTVEIQELTVLIRNDITGLNMALSDLQTLQNMELAD 116

Query: 121 GNYSQDRVVHSTTVCDDLKSKLMGATKELQDVLTTRTENIKAHESRKQIFSANALRDSPF 180
           GNYSQD+V H T VCDDLK++LMGATK+LQDVLTTR+EN+KAHE+RKQ+FS     DSP 
Sbjct: 117 GNYSQDQVGHYTAVCDDLKTRLMGATKQLQDVLTTRSENMKAHENRKQLFSTKNAVDSPP 176

Query: 181 RQHAQPVTEPPPWSSPVNASESSQPSALPP--GGVQVGNQLRRRPAVDNAPSHHMEMSML 238
           + +A+ V EPPPWSS  N   + Q   LPP   G   G+QLRRR A++NAPS  MEMS+L
Sbjct: 177 QNNAKSVPEPPPWSSSSNPFGNLQQPLLPPLNTGAPPGSQLRRRSAIENAPSQQMEMSLL 236

Query: 239 QQVVPRQENYSQSRAVALHNVESTITELGGIFTHLATMVAQQGELAIRIDDNMDESLANV 298
           QQ VP+QENYSQSRAVALH+VES ITEL GIF  LATMV QQGELAIRIDDNMDESL NV
Sbjct: 237 QQTVPKQENYSQSRAVALHSVESRITELSGIFPQLATMVTQQGELAIRIDDNMDESLVNV 296

Query: 299 EGARNALLRHLNQISSNRWLMIKIFAVIIFFLTVFMFFVA 338
           EGAR+ALL+HL +ISSNRWLM+KIFAVII FL VF+FFVA
Sbjct: 297 EGARSALLQHLTRISSNRWLMMKIFAVIILFLIVFLFFVA 336
Vesicle trafficking protein that functions in the secretory pathway.
Arabidopsis thaliana (taxid: 3702)
>sp|Q9LK09|SYP32_ARATH Syntaxin-32 OS=Arabidopsis thaliana GN=SYP32 PE=2 SV=1 Back     alignment and function description
>sp|O13644|SED5_SCHPO Integral membrane protein sed5 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=sed5 PE=3 SV=1 Back     alignment and function description
>sp|Q08DB5|STX5_BOVIN Syntaxin-5 OS=Bos taurus GN=STX5 PE=2 SV=1 Back     alignment and function description
>sp|Q13190|STX5_HUMAN Syntaxin-5 OS=Homo sapiens GN=STX5 PE=1 SV=2 Back     alignment and function description
>sp|Q8K1E0|STX5_MOUSE Syntaxin-5 OS=Mus musculus GN=Stx5 PE=1 SV=3 Back     alignment and function description
>sp|Q08851|STX5_RAT Syntaxin-5 OS=Rattus norvegicus GN=Stx5 PE=1 SV=2 Back     alignment and function description
>sp|Q24509|STX5_DROME Syntaxin-5 OS=Drosophila melanogaster GN=Syx5 PE=2 SV=2 Back     alignment and function description
>sp|Q20797|STX3_CAEEL Putative syntaxin-3 OS=Caenorhabditis elegans GN=syn-3 PE=3 SV=1 Back     alignment and function description
>sp|Q01590|SED5_YEAST Integral membrane protein SED5 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SED5 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query338
224112555347 predicted protein [Populus trichocarpa] 0.982 0.956 0.764 1e-147
255571871342 syntaxin, putative [Ricinus communis] gi 0.985 0.973 0.786 1e-147
449516073338 PREDICTED: syntaxin-31-like [Cucumis sat 0.988 0.988 0.740 1e-143
449463034338 PREDICTED: syntaxin-31-like [Cucumis sat 0.988 0.988 0.740 1e-142
356501139335 PREDICTED: syntaxin-31-like [Glycine max 0.988 0.997 0.731 1e-141
359486424341 PREDICTED: syntaxin-31-like [Vitis vinif 0.940 0.932 0.778 1e-140
297736636395 unnamed protein product [Vitis vinifera] 0.940 0.805 0.778 1e-138
297810679336 T-snare sed 5 [Arabidopsis lyrata subsp. 0.988 0.994 0.720 1e-126
357494667334 Syntaxin-31 [Medicago truncatula] gi|355 0.937 0.949 0.703 1e-126
15239228336 syntaxin-31 [Arabidopsis thaliana] gi|28 0.988 0.994 0.691 1e-120
>gi|224112555|ref|XP_002316227.1| predicted protein [Populus trichocarpa] gi|222865267|gb|EEF02398.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  528 bits (1360), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 259/339 (76%), Positives = 290/339 (85%), Gaps = 7/339 (2%)

Query: 5   YRDRTAEFRSLSQTLKKIGGAT----TAVDQPNNSFVSP-KPPNPASSRSEFNKKASRIG 59
           YRDRTAEF S++QTLKKIGG          Q NNS  SP KP    ++RSEFNKKAS IG
Sbjct: 11  YRDRTAEFHSITQTLKKIGGIAPVHQNKSYQANNS--SPSKPLLSYTTRSEFNKKASLIG 68

Query: 60  LGIHEASQKIARLAKLAKRSSMFDDPIVEIQELTALIKDDITALNMALSDLQTLQNLEIV 119
            G+HE SQKI+RLA+LAKRSSMF+DP VEIQELT LIK+DITALN AL+DLQT+QN+EI 
Sbjct: 69  SGVHETSQKISRLAQLAKRSSMFNDPTVEIQELTVLIKNDITALNAALTDLQTIQNMEIA 128

Query: 120 EGNYSQDRVVHSTTVCDDLKSKLMGATKELQDVLTTRTENIKAHESRKQIFSANALRDSP 179
           +GNYS+DR VHSTTVCDDLKSKLMGATK LQDVLTTRTENIKAHE+RKQIFS N  R++P
Sbjct: 129 DGNYSEDRFVHSTTVCDDLKSKLMGATKRLQDVLTTRTENIKAHENRKQIFSTNVSRENP 188

Query: 180 FRQHAQPVTEPPPWSSPVNASESSQPSALPPGGVQVGNQLRRRPAVDNAPSHHMEMSMLQ 239
           F + A+P+TEPPPWS+P N   +SQPS LPP  VQVGNQLRRRPAVDN PS HMEMSMLQ
Sbjct: 189 FLRQAKPMTEPPPWSNPSNTFANSQPSGLPPNDVQVGNQLRRRPAVDNTPSQHMEMSMLQ 248

Query: 240 QVVPRQENYSQSRAVALHNVESTITELGGIFTHLATMVAQQGELAIRIDDNMDESLANVE 299
           QV PRQENY++SRAVALHNVESTI+ELGGIFTHLATMV +QG+LAIRIDDNMDES+ NVE
Sbjct: 249 QVNPRQENYTESRAVALHNVESTISELGGIFTHLATMVVEQGQLAIRIDDNMDESVNNVE 308

Query: 300 GARNALLRHLNQISSNRWLMIKIFAVIIFFLTVFMFFVA 338
            AR +LLRHLNQISSNRWLM+KIFAVIIFFL VF+ FVA
Sbjct: 309 NARGSLLRHLNQISSNRWLMMKIFAVIIFFLIVFILFVA 347

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255571871|ref|XP_002526878.1| syntaxin, putative [Ricinus communis] gi|223533777|gb|EEF35509.1| syntaxin, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|449516073|ref|XP_004165072.1| PREDICTED: syntaxin-31-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449463034|ref|XP_004149239.1| PREDICTED: syntaxin-31-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|356501139|ref|XP_003519386.1| PREDICTED: syntaxin-31-like [Glycine max] Back     alignment and taxonomy information
>gi|359486424|ref|XP_002268768.2| PREDICTED: syntaxin-31-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|297736636|emb|CBI25507.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|297810679|ref|XP_002873223.1| T-snare sed 5 [Arabidopsis lyrata subsp. lyrata] gi|297319060|gb|EFH49482.1| T-snare sed 5 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|357494667|ref|XP_003617622.1| Syntaxin-31 [Medicago truncatula] gi|355518957|gb|AET00581.1| Syntaxin-31 [Medicago truncatula] Back     alignment and taxonomy information
>gi|15239228|ref|NP_196195.1| syntaxin-31 [Arabidopsis thaliana] gi|28380162|sp|Q9FFK1.1|SYP31_ARATH RecName: Full=Syntaxin-31; Short=AtSED5; Short=AtSYP31 gi|9759101|dbj|BAB09670.1| t-SNARE SED5 [Arabidopsis thaliana] gi|15809834|gb|AAL06845.1| AT5g05760/MJJ3_17 [Arabidopsis thaliana] gi|17978873|gb|AAL47408.1| AT5g05760/MJJ3_17 [Arabidopsis thaliana] gi|332003538|gb|AED90921.1| syntaxin-31 [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query338
TAIR|locus:2166419336 SYP31 "syntaxin of plants 31" 0.988 0.994 0.691 8.2e-115
UNIPROTKB|Q08DB5355 STX5 "Syntaxin-5" [Bos taurus 0.414 0.394 0.397 2.9e-44
UNIPROTKB|Q13190355 STX5 "Syntaxin-5" [Homo sapien 0.414 0.394 0.390 1.9e-43
RGD|68426355 Stx5 "syntaxin 5" [Rattus norv 0.414 0.394 0.390 2e-43
UNIPROTKB|I3LPE5355 STX5 "Uncharacterized protein" 0.414 0.394 0.390 3.7e-43
MGI|MGI:1928483355 Stx5a "syntaxin 5A" [Mus muscu 0.414 0.394 0.390 1.7e-42
UNIPROTKB|E2R287355 STX5 "Uncharacterized protein" 0.414 0.394 0.390 8.8e-42
UNIPROTKB|G5EGY8329 MGCH7_ch7g683 "Integral membra 0.902 0.927 0.369 2.8e-41
ASPGD|ASPL0000075749344 sed5 [Emericella nidulans (tax 0.952 0.936 0.356 3.6e-41
UNIPROTKB|B4DKR0259 STX5 "Syntaxin-5" [Homo sapien 0.414 0.540 0.390 5.2e-41
TAIR|locus:2166419 SYP31 "syntaxin of plants 31" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1132 (403.5 bits), Expect = 8.2e-115, P = 8.2e-115
 Identities = 235/340 (69%), Positives = 271/340 (79%)

Query:     1 MASPYRDRTAEFRSLSQTLKKIGGATTAVDQPNNSFVSPKPPNPASSRSEFNKKASRIGL 60
             M S +RDRT E  SLSQTLKKIG A  +V Q  +   S K  +P S   EFNKKASRIGL
Sbjct:     1 MGSTFRDRTVELHSLSQTLKKIG-AIPSVHQDEDDPASSKRSSPGS---EFNKKASRIGL 56

Query:    61 GIHEASQKIARLAKLAKRSSMFDDPIVEIQELTALIKDDITALNMALSDLQTLQNLEIVE 120
             GI E SQKI RLAKLAK+S++F+D  VEIQELT LI++DIT LNMALSDLQTLQN+E+ +
Sbjct:    57 GIKETSQKITRLAKLAKQSTIFNDRTVEIQELTVLIRNDITGLNMALSDLQTLQNMELAD 116

Query:   121 GNYSQDRVVHSTTVCDDLKSKLMGATKELQDVLTTRTENIKAHESRKQIFSANALRDSPF 180
             GNYSQD+V H T VCDDLK++LMGATK+LQDVLTTR+EN+KAHE+RKQ+FS     DSP 
Sbjct:   117 GNYSQDQVGHYTAVCDDLKTRLMGATKQLQDVLTTRSENMKAHENRKQLFSTKNAVDSPP 176

Query:   181 RQHAQPVTEPPPWSSPVNASESSQPSALPP--GGVQVGNQLRRRPAVDNAPSHHMEMSML 238
             + +A+ V EPPPWSS  N   + Q   LPP   G   G+QLRRR A++NAPS  MEMS+L
Sbjct:   177 QNNAKSVPEPPPWSSSSNPFGNLQQPLLPPLNTGAPPGSQLRRRSAIENAPSQQMEMSLL 236

Query:   239 QQVVPRQENYSQSRAVALHNVESTITELGGIFTHLATMVAQQGELAIRIDDNMDESLANV 298
             QQ VP+QENYSQSRAVALH+VES ITEL GIF  LATMV QQGELAIRIDDNMDESL NV
Sbjct:   237 QQTVPKQENYSQSRAVALHSVESRITELSGIFPQLATMVTQQGELAIRIDDNMDESLVNV 296

Query:   299 EGARNALLRHLNQISSNRWLMIKIFAVIIFFLTVFMFFVA 338
             EGAR+ALL+HL +ISSNRWLM+KIFAVII FL VF+FFVA
Sbjct:   297 EGARSALLQHLTRISSNRWLMMKIFAVIILFLIVFLFFVA 336
GO:0005484 "SNAP receptor activity" evidence=IEA;TAS
GO:0005794 "Golgi apparatus" evidence=ISM
GO:0006886 "intracellular protein transport" evidence=IEA;TAS
GO:0016192 "vesicle-mediated transport" evidence=IEA
GO:0006944 "cellular membrane fusion" evidence=RCA;TAS
GO:0009504 "cell plate" evidence=IDA
GO:0043231 "intracellular membrane-bounded organelle" evidence=IDA
GO:0005515 "protein binding" evidence=IPI
GO:0006891 "intra-Golgi vesicle-mediated transport" evidence=RCA
UNIPROTKB|Q08DB5 STX5 "Syntaxin-5" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|Q13190 STX5 "Syntaxin-5" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
RGD|68426 Stx5 "syntaxin 5" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|I3LPE5 STX5 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
MGI|MGI:1928483 Stx5a "syntaxin 5A" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|E2R287 STX5 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|G5EGY8 MGCH7_ch7g683 "Integral membrane protein sed5" [Magnaporthe oryzae 70-15 (taxid:242507)] Back     alignment and assigned GO terms
ASPGD|ASPL0000075749 sed5 [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms
UNIPROTKB|B4DKR0 STX5 "Syntaxin-5" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
O13644SED5_SCHPONo assigned EC number0.32630.89340.9773yesno
Q9FFK1SYP31_ARATHNo assigned EC number0.69110.98810.9940yesno
Q01590SED5_YEASTNo assigned EC number0.30350.89050.8852yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
estExt_fgenesh4_pg.C_LG_X1705
hypothetical protein (347 aa)
(Populus trichocarpa)
Predicted Functional Partners:
eugene3.00051282
hypothetical protein (123 aa)
     •• 0.809
estExt_Genewise1_v1.C_LG_II2504
hypothetical protein (123 aa)
     •• 0.809
estExt_Genewise1_v1.C_LG_XIII2126
SubName- Full=Putative uncharacterized protein; (225 aa)
     •• 0.808
gw1.X.5541.1
hypothetical protein (110 aa)
     •• 0.805
eugene3.01580030
hypothetical protein (219 aa)
    ••  0.801
estExt_fgenesh4_pm.C_LG_III0135
hypothetical protein (218 aa)
    ••  0.801

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query338
pfam00804103 pfam00804, Syntaxin, Syntaxin 2e-11
smart0039766 smart00397, t_SNARE, Helical region found in SNARE 4e-11
pfam0573962 pfam05739, SNARE, SNARE domain 1e-10
cd0019360 cd00193, t_SNARE, Soluble NSF (N-ethylmaleimide-se 1e-09
COG5325283 COG5325, COG5325, t-SNARE complex subunit, syntaxi 9e-06
COG5074280 COG5074, COG5074, t-SNARE complex subunit, syntaxi 6e-04
>gnl|CDD|201451 pfam00804, Syntaxin, Syntaxin Back     alignment and domain information 
 Score = 59.7 bits (145), Expect = 2e-11
 Identities = 33/111 (29%), Positives = 45/111 (40%), Gaps = 12/111 (10%)

Query: 47  SRSEFNKKASRIGLGIHEASQKIARLAKLAKRSSMFDDPI----VEIQELTALIKDDITA 102
              EF  +   I   I +  Q +  L KL KR     D       E++ELT  IK    A
Sbjct: 1   DLPEFFDEVEEIREEIQKIRQNLEELQKLHKRILTAPDSDKELREELEELTQEIKQLARA 60

Query: 103 LNMALSDLQTLQNLEIVEGNYSQDRVVHSTTVCDDLKSKLMGATKELQDVL 153
           +   L  LQ L   E   G        HS+ V    K++L   +K+ +DVL
Sbjct: 61  IKKKLKSLQQLNKSEQGLG--------HSSAVDRIRKNQLANLSKKFKDVL 103

Syntaxins are the prototype family of SNARE proteins. They usually consist of three main regions - a C-terminal transmembrane region, a central SNARE domain which is characteristic of and conserved in all syntaxins (pfam05739), and an N-terminal domain that is featured in this entry. This domain varies between syntaxin isoforms; in syntaxin 1A it is found as three alpha-helices with a left-handed twist. It may fold back on the SNARE domain to allow the molecule to adopt a 'closed' configuration that prevents formation of the core fusion complex - it thus has an auto-inhibitory role. The function of syntaxins is determined by their localisation. They are involved in neuronal exocytosis, ER-Golgi transport and Golgi-endosome transport, for example. They also interact with other proteins as well as those involved in SNARE complexes. These include vesicle coat proteins, Rab GTPases, and tethering factors. Length = 103
>gnl|CDD|197699 smart00397, t_SNARE, Helical region found in SNAREs Back     alignment and domain information
>gnl|CDD|203323 pfam05739, SNARE, SNARE domain Back     alignment and domain information
>gnl|CDD|238115 cd00193, t_SNARE, Soluble NSF (N-ethylmaleimide-sensitive fusion protein)-Attachment protein (SNAP) REceptor domain; these alpha-helical motifs form twisted and parallel heterotetrameric helix bundles; the core complex contains one helix from a protein that is anchored in the vesicle membrane (synaptobrevin), one helix from a protein of the target membrane (syntaxin), and two helices from another protein anchored in the target membrane (SNAP-25); their interaction forms a core which is composed of a polar zero layer, a flanking leucine-zipper layer acts as a water tight shield to isolate ionic interactions in the zero layer from the surrounding solvent Back     alignment and domain information
>gnl|CDD|227635 COG5325, COG5325, t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion] Back     alignment and domain information
>gnl|CDD|227406 COG5074, COG5074, t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 338
KOG0812311 consensus SNARE protein SED5/Syntaxin 5 [Intracell 100.0
KOG0809305 consensus SNARE protein TLG2/Syntaxin 16 [Intracel 100.0
KOG0810297 consensus SNARE protein Syntaxin 1 and related pro 99.96
COG5325283 t-SNARE complex subunit, syntaxin [Intracellular t 99.93
KOG0811269 consensus SNARE protein PEP12/VAM3/Syntaxin 7/Synt 99.92
COG5074280 t-SNARE complex subunit, syntaxin [Intracellular t 99.83
KOG3894316 consensus SNARE protein Syntaxin 18/UFE1 [Intracel 99.5
PF0573963 SNARE: SNARE domain; InterPro: IPR000727 The proce 99.43
cd0019360 t_SNARE Soluble NSF (N-ethylmaleimide-sensitive fu 99.33
smart0039766 t_SNARE Helical region found in SNAREs. All alpha- 99.23
PF00804103 Syntaxin: Syntaxin; InterPro: IPR006011 Syntaxins 98.81
KOG3202235 consensus SNARE protein TLG1/Syntaxin 6 [Intracell 98.79
cd00179151 SynN Syntaxin N-terminus domain; syntaxins are ner 98.55
smart00503117 SynN Syntaxin N-terminal domain. Three-helix domai 98.45
KOG0810297 consensus SNARE protein Syntaxin 1 and related pro 97.55
PF0095789 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 97.28
KOG3385118 consensus V-SNARE [Intracellular trafficking, secr 97.07
PF14523102 Syntaxin_2: Syntaxin-like protein; PDB: 2DNX_A. 96.86
KOG0811269 consensus SNARE protein PEP12/VAM3/Syntaxin 7/Synt 96.84
KOG0860116 consensus Synaptobrevin/VAMP-like protein [Intrace 96.81
PF1141629 Sed5p: Integral membrane protein Sed5p; InterPro: 96.79
PF09753251 Use1: Membrane fusion protein Use1; InterPro: IPR0 96.74
KOG1666220 consensus V-SNARE [Intracellular trafficking, secr 95.75
COG5074280 t-SNARE complex subunit, syntaxin [Intracellular t 95.75
COG5325283 t-SNARE complex subunit, syntaxin [Intracellular t 95.4
PF1049687 Syntaxin-18_N: SNARE-complex protein Syntaxin-18 N 95.12
KOG3208231 consensus SNARE protein GS28 [Intracellular traffi 94.84
PF0390892 Sec20: Sec20; InterPro: IPR005606 Sec20 is a membr 93.92
PF0917797 Syntaxin-6_N: Syntaxin 6, N-terminal; InterPro: IP 91.04
KOG2678244 consensus Predicted membrane protein [Function unk 90.33
PF09753251 Use1: Membrane fusion protein Use1; InterPro: IPR0 88.62
KOG3251213 consensus Golgi SNAP receptor complex member [Intr 86.75
KOG3065273 consensus SNAP-25 (synaptosome-associated protein) 86.33
KOG0860116 consensus Synaptobrevin/VAMP-like protein [Intrace 86.31
PF0988959 DUF2116: Uncharacterized protein containing a Zn-r 85.35
PF03904230 DUF334: Domain of unknown function (DUF334); Inter 84.22
PF0988959 DUF2116: Uncharacterized protein containing a Zn-r 81.6
PF05478 806 Prominin: Prominin; InterPro: IPR008795 The promin 81.51
>KOG0812 consensus SNARE protein SED5/Syntaxin 5 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information 
Probab=100.00  E-value=1.7e-64  Score=458.29  Aligned_cols=310  Identities=41%  Similarity=0.631  Sum_probs=247.5

Q ss_pred             CCCCCchHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 019591            3 SPYRDRTAEFRSLSQTLKKIGGATTAVDQPNNSFVSPKPPNPASSRSEFNKKASRIGLGIHEASQKIARLAKLAKRSSMF   82 (338)
Q Consensus         3 ~~~~DRT~eF~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~seF~~~a~~I~~~i~~~~~kl~~L~~L~kr~~lF   82 (338)
                      +++||||.||+++|.+++.+... +..+  .   ..|.+.....+.+||++.|+.|+++|+.|.+||++|+.||||+++|
T Consensus         1 m~~rDRT~Ef~~~~~s~~~r~~~-~~~~--~---~~p~~~~~~~~~seF~~~A~~Ig~~is~T~~kl~kLa~lAKrks~f   74 (311)
T KOG0812|consen    1 MSFRDRTSEFQAAVKSLKKRNAT-RGVN--Q---ADPGADKTVSQGSEFNKKASRIGKEISQTGAKLEKLAQLAKRKSLF   74 (311)
T ss_pred             CCcchhhHHHHHHHHHHHHHhhc-cccc--c---CCCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence            57999999999999999988633 2222  1   1123445567899999999999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCc-hhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019591           83 DDPIVEIQELTALIKDDITALNMALSDLQTLQNLEIVEGNYS-QDRVVHSTTVCDDLKSKLMGATKELQDVLTTRTENIK  161 (338)
Q Consensus        83 dD~~~eI~~Lt~~Ik~~i~~l~~~I~~Lq~~~~~~~~~g~~~-~~~~~h~~nVv~~L~~kL~~~s~~Fr~~l~~r~~~lk  161 (338)
                      ||+++||.+||++||++|+.++.+|.+|+++.+..   |+.+ .+...|+++||..|+++|++++++|++|++.|++++|
T Consensus        75 ~Dr~VeI~eLT~iikqdi~sln~~i~~Lqei~~~~---gn~s~~~~~~Hs~~vV~~Lqs~la~is~~fk~VLE~Rtenmk  151 (311)
T KOG0812|consen   75 DDRPVEIQELTFIIKQDITSLNSQIAQLQEIVKAN---GNLSNKQLVQHSKNVVVSLQSKLANISKDFKDVLEIRTENMK  151 (311)
T ss_pred             cCcchhhHHHHHHHhcchHHHHHHHHHHHHHHHHh---ccccchHhhhhhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHH
Confidence            99999999999999999999999999999988533   2333 6679999999999999999999999999999999999


Q ss_pred             HHHHHHhhhhccccCCCcccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccCcccccCCcCCCCCchhhhhhHHHhh
Q 019591          162 AHESRKQIFSANALRDSPFRQHAQPVTEPPPWSSPVNASESSQPSALPPGGVQVGNQLRRRPAVDNAPSHHMEMSMLQQV  241 (338)
Q Consensus       162 ~~~~R~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~~~~~~~~~Q~ql  241 (338)
                      +++.|+++|+.+.++.++. +..+.+.-+.||..-.++.+..            ...+ ...+-++.+..   +++|+++
T Consensus       152 a~k~R~dkfs~~~a~~~a~-p~~n~~a~~~~~~~l~~~~~~~------------sq~~-~~ln~gd~~~~---qqqQm~l  214 (311)
T KOG0812|consen  152 AVKNRRDKFSASYASLNAN-PVSNSAARLHPLKLLVDPKDEA------------SQDV-ESLNMGDSSNP---QQQQMAL  214 (311)
T ss_pred             HHhhHHHHhccccCCCCCc-ccCcccccCCchhhhcCchhhc------------cccc-ccccccCCCCC---HHHHHHH
Confidence            9999999998864332110 0000000011111000000000            0000 00001111111   1567777


Q ss_pred             hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHH
Q 019591          242 VPRQENYSQSRAVALHNVESTITELGGIFTHLATMVAQQGELAIRIDDNMDESLANVEGARNALLRHLNQISSNRWLMIK  321 (338)
Q Consensus       242 ~~~~~~~~~~R~~~i~~ie~~i~eL~~if~~la~mV~~Qge~idrId~nv~~a~~~v~~g~~eL~ka~~~~~~~r~~~~~  321 (338)
                      +++.++|+++|..++++||++|.||++||.+||+||.+|||++.|||+||+++..||++|+.||.||+++.++|||+|++
T Consensus       215 l~es~~Y~Q~R~~~~q~IEstIsElG~IF~QLA~mVseQ~E~i~RID~nv~ds~lnI~gA~~ellKy~e~vSSNRwLmvk  294 (311)
T KOG0812|consen  215 LDESDEYVQERAKTMQNIESTISELGGIFQQLASMVSEQEETIQRIDDNVDDSDLNIEGAHSELLKYFERVSSNRWLMVK  294 (311)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHhccchHHHHH
Confidence            88889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhC
Q 019591          322 IFAVIIFFLTVFMFFVA  338 (338)
Q Consensus       322 i~~~l~i~~~~~vl~~~  338 (338)
                      ||+|||+||++||||++
T Consensus       295 iF~i~ivFflvfvlf~~  311 (311)
T KOG0812|consen  295 IFGILIVFFLVFVLFLA  311 (311)
T ss_pred             HHHHHHHHHHHHHHhcC
Confidence            99999999999999986

>KOG0809 consensus SNARE protein TLG2/Syntaxin 16 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0810 consensus SNARE protein Syntaxin 1 and related proteins [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>COG5325 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion] Back     alignment and domain information
>KOG0811 consensus SNARE protein PEP12/VAM3/Syntaxin 7/Syntaxin 17 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>COG5074 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion] Back     alignment and domain information
>KOG3894 consensus SNARE protein Syntaxin 18/UFE1 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF05739 SNARE: SNARE domain; InterPro: IPR000727 The process of vesicular fusion with target membranes depends on a set of SNAREs (SNAP-Receptors), which are associated with the fusing membranes [, ] Back     alignment and domain information
>cd00193 t_SNARE Soluble NSF (N-ethylmaleimide-sensitive fusion protein)-Attachment protein (SNAP) REceptor domain; these alpha-helical motifs form twisted and parallel heterotetrameric helix bundles; the core complex contains one helix from a protein that is anchored in the vesicle membrane (synaptobrevin), one helix from a protein of the target membrane (syntaxin), and two helices from another protein anchored in the target membrane (SNAP-25); their interaction forms a core which is composed of a polar zero layer, a flanking leucine-zipper layer acts as a water tight shield to isolate ionic interactions in the zero layer from the surrounding solvent Back     alignment and domain information
>smart00397 t_SNARE Helical region found in SNAREs Back     alignment and domain information
>PF00804 Syntaxin: Syntaxin; InterPro: IPR006011 Syntaxins A and B are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane Back     alignment and domain information
>KOG3202 consensus SNARE protein TLG1/Syntaxin 6 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>cd00179 SynN Syntaxin N-terminus domain; syntaxins are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane; they are a family of receptors for intracellular transport vesicles; each target membrane may be identified by a specific member of the syntaxin family; syntaxins contain a moderately well conserved amino-terminal domain, called Habc, whose structure is an antiparallel three-helix bundle; a linker of about 30 amino acids connects this to the carboxy-terminal region, designated H3 (t_SNARE), of the syntaxin cytoplasmic domain; the highly conserved H3 region forms a single, long alpha-helix when it is part of the core SNARE complex and anchors the protein on the cytoplasmic surface of cellular membranes; H3 is not included in defining this domain Back     alignment and domain information
>smart00503 SynN Syntaxin N-terminal domain Back     alignment and domain information
>KOG0810 consensus SNARE protein Syntaxin 1 and related proteins [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF00957 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 Synaptobrevin is an intrinsic membrane protein of small synaptic vesicles [], specialised secretory organelles of neurons that actively accumulate neurotransmitters and participate in their calcium-dependent release by exocytosis Back     alignment and domain information
>KOG3385 consensus V-SNARE [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF14523 Syntaxin_2: Syntaxin-like protein; PDB: 2DNX_A Back     alignment and domain information
>KOG0811 consensus SNARE protein PEP12/VAM3/Syntaxin 7/Syntaxin 17 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0860 consensus Synaptobrevin/VAMP-like protein [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF11416 Sed5p: Integral membrane protein Sed5p; InterPro: IPR021538 Sed5p interacts with Sly1p , a positive regulator of intracellular membrane fusion, allowing SM proteins to stay associated with the assembling fusion machinery Back     alignment and domain information
>PF09753 Use1: Membrane fusion protein Use1; InterPro: IPR019150 This entry represents a family of proteins, approximately 300 residues in length, involved in vesicle transport Back     alignment and domain information
>KOG1666 consensus V-SNARE [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>COG5074 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion] Back     alignment and domain information
>COG5325 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion] Back     alignment and domain information
>PF10496 Syntaxin-18_N: SNARE-complex protein Syntaxin-18 N-terminus ; InterPro: IPR019529 This is the conserved N-terminal of Syntaxin-18 Back     alignment and domain information
>KOG3208 consensus SNARE protein GS28 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF03908 Sec20: Sec20; InterPro: IPR005606 Sec20 is a membrane glycoprotein associated with secretory pathway Back     alignment and domain information
>PF09177 Syntaxin-6_N: Syntaxin 6, N-terminal; InterPro: IPR015260 Members of this entry, which are found in the amino terminus of various SNARE proteins, adopt a structure consisting of an antiparallel three-helix bundle Back     alignment and domain information
>KOG2678 consensus Predicted membrane protein [Function unknown] Back     alignment and domain information
>PF09753 Use1: Membrane fusion protein Use1; InterPro: IPR019150 This entry represents a family of proteins, approximately 300 residues in length, involved in vesicle transport Back     alignment and domain information
>KOG3251 consensus Golgi SNAP receptor complex member [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG3065 consensus SNAP-25 (synaptosome-associated protein) component of SNARE complex [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0860 consensus Synaptobrevin/VAMP-like protein [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF09889 DUF2116: Uncharacterized protein containing a Zn-ribbon (DUF2116); InterPro: IPR019216 This entry contains various hypothetical prokaryotic proteins whose functions are unknown Back     alignment and domain information
>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function Back     alignment and domain information
>PF09889 DUF2116: Uncharacterized protein containing a Zn-ribbon (DUF2116); InterPro: IPR019216 This entry contains various hypothetical prokaryotic proteins whose functions are unknown Back     alignment and domain information
>PF05478 Prominin: Prominin; InterPro: IPR008795 The prominins are an emerging family of proteins that, among the multispan membrane proteins, display a novel topology Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query338
1dn1_B267 Syntaxin 1A, syntaxin binding protein 1; protein-p 4e-16
3hd7_B109 Syntaxin-1A; membrane protein, coiled-coil, 4-heli 3e-15
2xhe_B279 Syntaxin1; exocytosis, exocytosis complex, snare, 9e-15
1gl2_B65 Syntaxin 7; membrane protein, membrane fusion prot 1e-14
3b5n_B69 Protein SSO1; snare complex, syntaxin, synaptobrev 1e-11
2nps_B71 Syntaxin 13, vesicle-associated membrane protein 4 1e-11
1jth_B77 Syntaxin 1A; coiled-coil, polar layer, endocytosis 6e-11
1n7s_B68 Syntaxin 1A; neuronal snare protein complex, four 1e-10
1sfc_B83 Protein (syntaxin 1A), protein (synaptobrevin 2); 7e-10
>1dn1_B Syntaxin 1A, syntaxin binding protein 1; protein-protein complex, multi-subunit; 2.60A {Rattus norvegicus} SCOP: a.47.2.1 PDB: 3c98_B Length = 267 Back     alignment and structure
 Score = 76.3 bits (187), Expect = 4e-16
 Identities = 51/320 (15%), Positives = 102/320 (31%), Gaps = 59/320 (18%)

Query: 6   RDRTAEFRSLSQTLKKIGGATTAVDQPNNSFVSPKPPNPASSRSEFNKKASRIGLGIHEA 65
           +DRT E R+   +           D  + +    +         EF ++   I   I + 
Sbjct: 2   KDRTQELRTAKDS----------DDDDDVTVTVDRDRFM----DEFFEQVEEIRGFIDKI 47

Query: 66  SQKIARLAKLAKR--SSMFDDPIV--EIQELTALIKDDITALNMALSDLQTLQNLEIVEG 121
           ++ +  + +      +S   D     E++EL + IK     +   L  ++     +    
Sbjct: 48  AENVEEVKRKHSAILASPNPDEKTKEELEELMSDIKKTANKVRSKLKSIEQ-SIEQEEGL 106

Query: 122 NYSQDRVVHSTTVCDDLKSKLMGATKELQDVLTTRTENIKAHESRKQIFSANALRDSPFR 181
           N S   +    T    L  K +    E     +   E  K    R               
Sbjct: 107 NRSSADLRIRKTQHSTLSRKFVEVMSEYNATQSDYRERCKGRIQR--------------- 151

Query: 182 QHAQPVTEPPPWSSPVNASESSQPSALPPGGVQVGNQLRRRPAVDNAPSHHMEMSMLQQV 241
                +T     S  +     S                       N       + M   +
Sbjct: 152 --QLEITGRTTTSEELEDMLESG----------------------NPAIFASGIIMDSSI 187

Query: 242 VPRQENYSQSRAVALHNVESTITELGGIFTHLATMVAQQGELAIRIDDNMDESLANVEGA 301
             +  +  ++R   +  +E++I EL  +F  +A +V  QGE+  RI+ N++ ++  VE A
Sbjct: 188 SKQALSEIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERA 247

Query: 302 RNALLR-HLNQISSNRWLMI 320
            +   +    Q  + R  ++
Sbjct: 248 VSDTKKAVKYQSKARRKKIM 267
>3hd7_B Syntaxin-1A; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_B 3ipd_B Length = 109 Back     alignment and structure
>2xhe_B Syntaxin1; exocytosis, exocytosis complex, snare, neuro fusion, SM PROT choanoflagellates; 2.80A {Monosiga brevicollis} Length = 279 Back     alignment and structure
>1gl2_B Syntaxin 7; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Mus musculus} SCOP: h.1.15.1 Length = 65 Back     alignment and structure
>3b5n_B Protein SSO1; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1 Length = 69 Back     alignment and structure
>2nps_B Syntaxin 13, vesicle-associated membrane protein 4; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Rattus norvegicus} Length = 71 Back     alignment and structure
>1jth_B Syntaxin 1A; coiled-coil, polar layer, endocytosis-exocytosis complex; 2.00A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1hvv_A* 1urq_B Length = 77 Back     alignment and structure
>1n7s_B Syntaxin 1A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 3rk2_B 3rk3_B 3rl0_B 1kil_B Length = 68 Back     alignment and structure
>1sfc_B Protein (syntaxin 1A), protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1l4a_B Length = 83 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query338
2xhe_B279 Syntaxin1; exocytosis, exocytosis complex, snare, 99.98
1dn1_B267 Syntaxin 1A, syntaxin binding protein 1; protein-p 99.95
3hd7_B109 Syntaxin-1A; membrane protein, coiled-coil, 4-heli 99.91
1jth_B77 Syntaxin 1A; coiled-coil, polar layer, endocytosis 99.87
3c98_B279 Syntaxin-1A; protein complex, alternative splicing 99.86
2nps_B71 Syntaxin 13, vesicle-associated membrane protein 4 99.85
1sfc_B83 Protein (syntaxin 1A), protein (synaptobrevin 2); 99.83
3b5n_B69 Protein SSO1; snare complex, syntaxin, synaptobrev 99.82
1fio_A196 SSO1 protein; four helix bundle, alpha helix, memb 99.81
1n7s_B68 Syntaxin 1A; neuronal snare protein complex, four 99.79
1gl2_B65 Syntaxin 7; membrane protein, membrane fusion prot 99.79
1ez3_A127 Syntaxin-1A; three helix bundle, endocytosis/exocy 98.85
1s94_A180 S-syntaxin; three helix bundle, structural plastic 98.84
3hd7_B109 Syntaxin-1A; membrane protein, coiled-coil, 4-heli 97.69
2dnx_A130 Syntaxin-12; snare, HABC domain, UP and DOWN three 97.55
2nps_D82 Syntaxin-6; vesicle fusion, snare complex, early e 97.06
3hd7_A91 Vesicle-associated membrane protein 2; membrane pr 96.77
1mqs_B50 SED5P, integral membrane protein SED5; SM-protein, 96.46
1n7s_D66 SNAP-25A; neuronal snare protein complex, four hel 96.31
1sfc_D87 Protein (SNAP-25B), protein (synaptobrevin 2); mem 96.26
1nhl_A54 Synaptosomal-associated protein 23; snare, coiled- 96.0
1gl2_D65 Syntaxin 8, vesicle transport V-snare protein VTI1 95.77
1n7s_C79 SNAP-25A; neuronal snare protein complex, four hel 95.73
1l4a_D87 S-SNAP25 fusion protein; snare, snare complex, mem 95.14
3b5n_D64 Protein transport protein SEC9; snare complex, syn 94.32
3b5n_C70 Protein transport protein SEC9; snare complex, syn 93.92
1l4a_C83 S-SNAP25 fusion protein; snare, snare complex, mem 93.8
2kog_A119 Vesicle-associated membrane protein 2; synaptobrev 90.17
1gl2_C65 VTI1B, vesicle transport V-snare protein VTI1-like 88.52
1jth_B77 Syntaxin 1A; coiled-coil, polar layer, endocytosis 86.83
2nps_C81 Vesicle transport through interaction with T- snar 86.61
>2xhe_B Syntaxin1; exocytosis, exocytosis complex, snare, neuro fusion, SM PROT choanoflagellates; 2.80A {Monosiga brevicollis} Back     alignment and structure
Probab=99.98  E-value=2e-33  Score=263.58  Aligned_cols=231  Identities=19%  Similarity=0.229  Sum_probs=155.7

Q ss_pred             CCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc---CCCCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 019591           44 PASSRSEFNKKASRIGLGIHEASQKIARLAKLAKRS---SMFDD---PIVEIQELTALIKDDITALNMALSDLQTLQNLE  117 (338)
Q Consensus        44 ~~~~~seF~~~a~~I~~~i~~~~~kl~~L~~L~kr~---~lFdD---~~~eI~~Lt~~Ik~~i~~l~~~I~~Lq~~~~~~  117 (338)
                      ....+++|+..++.|..+|..+..++.+|.+||++.   +.|+|   ...+|+.|+..|++.+..|+..|+.|+...+..
T Consensus        39 ~~~~~~~F~~~~~~I~~~I~~i~~~l~~L~~l~~~~l~t~~~~~~~~~~~~ie~l~~~i~~~~~~i~~~lk~l~~~~~~~  118 (279)
T 2xhe_B           39 PEPFMADFFNRVKRIRDNIEDIEQAIEQVAQLHTESLVAVSKEDRDRLNEKLQDTMARISALGNKIRADLKQIEKENKRA  118 (279)
T ss_dssp             -CCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             CCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            345689999999999999999999999999999875   55776   358999999999999999999999999866432


Q ss_pred             hhc---CCCchh-hHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccCCCcccccCCCCCCCCCC
Q 019591          118 IVE---GNYSQD-RVVHSTTVCDDLKSKLMGATKELQDVLTTRTENIKAHESRKQIFSANALRDSPFRQHAQPVTEPPPW  193 (338)
Q Consensus       118 ~~~---g~~~~~-~~~h~~nVv~~L~~kL~~~s~~Fr~~l~~r~~~lk~~~~R~~~f~~~~~~~~~~~~~~~~~~~~~~~  193 (338)
                      ...   +..+.. ..+|+.+++..|..+|++++..|++++..|.+++|.+..|.-.+..      |           .+.
T Consensus       119 ~~~~~~~~~~~~~e~r~~k~~~~~L~~~f~~~~~~Fq~~Q~~y~e~~k~~~~R~~~i~~------~-----------~~~  181 (279)
T 2xhe_B          119 QQEGTFEDGTVSTDLRIRQSQHSSLSRKFVKVMTRYNDVQAENKRRYGENVARQCRVVE------P-----------SLS  181 (279)
T ss_dssp             HHHHCCSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTSCCSSC------C-----------CCS
T ss_pred             hhcccccCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC------C-----------CCC
Confidence            110   011222 5589999999999999999999999999999999987665311110      1           000


Q ss_pred             CCCCCCCCCCCCCCCCCCCCccCcccccCCcCCCCCchhhhhhHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019591          194 SSPVNASESSQPSALPPGGVQVGNQLRRRPAVDNAPSHHMEMSMLQQVVPRQENYSQSRAVALHNVESTITELGGIFTHL  273 (338)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~~~~~~~~~Q~ql~~~~~~~~~~R~~~i~~ie~~i~eL~~if~~l  273 (338)
                      ..           .+.+ ....|.           +.  .+++.+.+..+....++++|+++|.+||++|.||++||.||
T Consensus       182 ~e-----------e~~~-~~e~g~-----------~~--~f~q~~~~~~~~~~~~i~eR~~eI~~Ie~~i~el~~if~dl  236 (279)
T 2xhe_B          182 DD-----------AIQK-VIEHGT-----------EG--IFSGMRLEGAEAKLNEIRDRHKDIQQLERSLLELHEMFTDM  236 (279)
T ss_dssp             ST-----------THHH-HHHHC------------------------------CTTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HH-----------HHHH-HHhCCc-----------hH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            00           0000 000000           00  01111122233455689999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q 019591          274 ATMVAQQGELAIRIDDNMDESLANVEGARNALLRHLNQISSNR  316 (338)
Q Consensus       274 a~mV~~Qge~idrId~nv~~a~~~v~~g~~eL~ka~~~~~~~r  316 (338)
                      ++||.+||++||+||+||+.|..||++|+.+|.||..|++++|
T Consensus       237 a~lV~~Qg~~id~Ie~nv~~~~~~v~~~~~~l~kA~~~qk~~R  279 (279)
T 2xhe_B          237 STLVASQGEMIDRIEFSVEQSHNYVKKATEQVVQARHYQESAR  279 (279)
T ss_dssp             HTTTTTSCSSTTCHHHHHHTCCCCC------------------
T ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHccC
Confidence            9999999999999999999999999999999999999998876
>1dn1_B Syntaxin 1A, syntaxin binding protein 1; protein-protein complex, multi-subunit; 2.60A {Rattus norvegicus} PDB: 3c98_B Back     alignment and structure
>3hd7_B Syntaxin-1A; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_B 3ipd_B Back     alignment and structure
>1jth_B Syntaxin 1A; coiled-coil, polar layer, endocytosis-exocytosis complex; 2.00A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1hvv_A* 1urq_B Back     alignment and structure
>3c98_B Syntaxin-1A; protein complex, alternative splicing, cytoplasm, membrane, phosphoprotein, protein transport, transport, coiled coil; 2.60A {Rattus norvegicus} Back     alignment and structure
>2nps_B Syntaxin 13, vesicle-associated membrane protein 4; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Rattus norvegicus} Back     alignment and structure
>1sfc_B Protein (syntaxin 1A), protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1l4a_B Back     alignment and structure
>3b5n_B Protein SSO1; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1 Back     alignment and structure
>1fio_A SSO1 protein; four helix bundle, alpha helix, membrane protein; 2.10A {Saccharomyces cerevisiae} SCOP: a.47.2.1 Back     alignment and structure
>1n7s_B Syntaxin 1A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 3rk2_B 3rk3_B 3rl0_B 1kil_B Back     alignment and structure
>1gl2_B Syntaxin 7; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Mus musculus} SCOP: h.1.15.1 Back     alignment and structure
>1ez3_A Syntaxin-1A; three helix bundle, endocytosis/exocytosis complex; 1.90A {Rattus norvegicus} SCOP: a.47.2.1 PDB: 1br0_A 3lg7_A* Back     alignment and structure
>1s94_A S-syntaxin; three helix bundle, structural plasticity, endocytosis-exocy complex; 3.34A {Loligo pealei} SCOP: a.47.2.1 Back     alignment and structure
>3hd7_B Syntaxin-1A; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_B 3ipd_B Back     alignment and structure
>2dnx_A Syntaxin-12; snare, HABC domain, UP and DOWN three helix bundle, LEFT-handed twist, membrane fusion, vesicle transport, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2nps_D Syntaxin-6; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Homo sapiens} Back     alignment and structure
>3hd7_A Vesicle-associated membrane protein 2; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_A 3ipd_A Back     alignment and structure
>1mqs_B SED5P, integral membrane protein SED5; SM-protein, snare, syntaxin, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} Back     alignment and structure
>1n7s_D SNAP-25A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 3rk2_D 3rk3_D 3rl0_D 1kil_D 3hd7_D* 3hd9_D 3ipd_D 1urq_D 1xtg_B Back     alignment and structure
>1sfc_D Protein (SNAP-25B), protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1 Back     alignment and structure
>1nhl_A Synaptosomal-associated protein 23; snare, coiled-coil, protein transport; 2.30A {Homo sapiens} SCOP: h.1.15.1 Back     alignment and structure
>1gl2_D Syntaxin 8, vesicle transport V-snare protein VTI1-like 1; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Rattus norvegicus} SCOP: h.1.15.1 Back     alignment and structure
>1n7s_C SNAP-25A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1sfc_C 1urq_C 3hd7_C* 3hd9_C 3ipd_C 3rk2_C 3rk3_C 3rl0_C 1kil_C 1jth_A Back     alignment and structure
>1l4a_D S-SNAP25 fusion protein; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1 Back     alignment and structure
>3b5n_D Protein transport protein SEC9; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} Back     alignment and structure
>3b5n_C Protein transport protein SEC9; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1 Back     alignment and structure
>1l4a_C S-SNAP25 fusion protein; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1 Back     alignment and structure
>2kog_A Vesicle-associated membrane protein 2; synaptobrevin, VAMP2, DPC micelle, snare, coiled coil, membrane fusion, transmembrane; NMR {Rattus norvegicus} Back     alignment and structure
>1gl2_C VTI1B, vesicle transport V-snare protein VTI1-like 1; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Mus musculus} SCOP: h.1.15.1 Back     alignment and structure
>1jth_B Syntaxin 1A; coiled-coil, polar layer, endocytosis-exocytosis complex; 2.00A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1hvv_A* 1urq_B Back     alignment and structure
>2nps_C Vesicle transport through interaction with T- snares homolog 1A; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Rattus norvegicus} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 338
d1fioa_196 a.47.2.1 (A:) Sso1 {Baker's yeast (Saccharomyces c 4e-14
>d1fioa_ a.47.2.1 (A:) Sso1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 196 Back     information, alignment and structure

class: All alpha proteins
fold: STAT-like
superfamily: t-snare proteins
family: t-snare proteins
domain: Sso1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 67.9 bits (165), Expect = 4e-14
 Identities = 28/232 (12%), Positives = 65/232 (28%), Gaps = 41/232 (17%)

Query: 49  SEFNKKASRIGLGIHEASQKIARLAKLAKRSSMFDDPIVEIQELTALIKDDITALNMALS 108
             F  K S+I   + +    I ++  L KR     +   +   L   + + +        
Sbjct: 5   VGFMNKISQINRDLDKYDHTINQVDSLHKRLLTEVNE-EQASHLRHSLDNFVAQATDLQF 63

Query: 109 DLQTLQNLEIVEGNYSQDRVVHSTTVCDDLKSKLMGATKELQDVLTTRTENIKAHESRKQ 168
            L+      I           +     ++ + + +   ++ + V +   E  K       
Sbjct: 64  KLKNE----IKSAQRDGIHDTNKQAQAENSRQRFLKLIQDYRIVDSNYKEENKEQ----- 114

Query: 169 IFSANALRDSPFRQHAQPVTEPPPWSSPVNASESSQPSALPPGGVQVGNQLRRRPAVDNA 228
                                      P    +  + +    GG Q+ +Q          
Sbjct: 115 ------------------AKRQYMIIQPEATEDEVEAAISDVGGQQIFSQ---------- 146

Query: 229 PSHHMEMSMLQQVVPRQENYSQSRAVALHNVESTITELGGIFTHLATMVAQQ 280
               +  +  +          Q+R   L  +E ++ EL  +F  +  +V +Q
Sbjct: 147 ---ALLNANRRGEAKTALAEVQARHQELLKLEKSMAELTQLFNDMEELVIEQ 195

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query338
d1fioa_196 Sso1 {Baker's yeast (Saccharomyces cerevisiae) [Ta 99.71
d1ez3a_124 Syntaxin 1A N-terminal domain {Rat (Rattus norvegi 98.51
>d1fioa_ a.47.2.1 (A:) Sso1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
class: All alpha proteins
fold: STAT-like
superfamily: t-snare proteins
family: t-snare proteins
domain: Sso1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.71  E-value=2.3e-17  Score=142.55  Aligned_cols=184  Identities=15%  Similarity=0.148  Sum_probs=125.3

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCC--H----HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcC
Q 019591           48 RSEFNKKASRIGLGIHEASQKIARLAKLAKRSSMFDDP--I----VEIQELTALIKDDITALNMALSDLQTLQNLEIVEG  121 (338)
Q Consensus        48 ~seF~~~a~~I~~~i~~~~~kl~~L~~L~kr~~lFdD~--~----~eI~~Lt~~Ik~~i~~l~~~I~~Lq~~~~~~~~~g  121 (338)
                      ..+|+..+.+|..+|..+..++.+|..++++.....+.  .    .+|+.++..|+..+..|+..+..++.    .    
T Consensus         4 ~~~f~~~v~~I~~~i~~i~~~i~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~k~~~~~~~~----~----   75 (196)
T d1fioa_           4 FVGFMNKISQINRDLDKYDHTINQVDSLHKRLLTEVNEEQASHLRHSLDNFVAQATDLQFKLKNEIKSAQR----D----   75 (196)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----H----
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc----c----
Confidence            57899999999999999999999999999875443332  2    34555555555555555555544432    1    


Q ss_pred             CCchhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccCCCcccccCCCCCCCCCCCCCCCCCC
Q 019591          122 NYSQDRVVHSTTVCDDLKSKLMGATKELQDVLTTRTENIKAHESRKQIFSANALRDSPFRQHAQPVTEPPPWSSPVNASE  201 (338)
Q Consensus       122 ~~~~~~~~h~~nVv~~L~~kL~~~s~~Fr~~l~~r~~~lk~~~~R~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  201 (338)
                         ....++..+.+..|..+|.+++.+|+.++..|.+.+|.+..|...+..+...... .                    
T Consensus        76 ---~~~~~~~~~~~~~l~~~l~~~~~~f~~~q~~~~~~~k~~~~r~~~~~~~~~~~~~-~--------------------  131 (196)
T d1fioa_          76 ---GIHDTNKQAQAENSRQRFLKLIQDYRIVDSNYKEENKEQAKRQYMIIQPEATEDE-V--------------------  131 (196)
T ss_dssp             ---TTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCCHHH-H--------------------
T ss_pred             ---ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCccchh-h--------------------
Confidence               2234677899999999999999999999999999999998888766543321100 0                    


Q ss_pred             CCCCCCCCCCCCccCcccccCCcCCCCCchhh--hhhHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019591          202 SSQPSALPPGGVQVGNQLRRRPAVDNAPSHHM--EMSMLQQVVPRQENYSQSRAVALHNVESTITELGGIFTHLATMVAQ  279 (338)
Q Consensus       202 ~~~~~~~~~~~~~~g~~~~~~~~~d~~~~~~~--~~~~Q~ql~~~~~~~~~~R~~~i~~ie~~i~eL~~if~~la~mV~~  279 (338)
                             +.....+|.          ......  .+....+.......++++|+++|.+||++|.||++||.|||+||.+
T Consensus       132 -------~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~i~eR~~eI~~Ie~sI~eL~~iF~dLa~LV~e  194 (196)
T d1fioa_         132 -------EAAISDVGG----------QQIFSQALLNANRRGEAKTALAEVQARHQELLKLEKSMAELTQLFNDMEELVIE  194 (196)
T ss_dssp             -------HHHTSHHHH----------HHHHHHHTC------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCC
T ss_pred             -------hHhhccccc----------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHc
Confidence                   000000000          000000  0000111123457889999999999999999999999999999998


Q ss_pred             H
Q 019591          280 Q  280 (338)
Q Consensus       280 Q  280 (338)
                      |
T Consensus       195 Q  195 (196)
T d1fioa_         195 Q  195 (196)
T ss_dssp             C
T ss_pred             c
Confidence            8
>d1ez3a_ a.47.2.1 (A:) Syntaxin 1A N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure