Citrus Sinensis ID: 019598

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------34
MPIFKFQGKFNQKNTTMLLRLPFFSASRNSSGMLARVKSEIVQSSIKAQQLLSKGRRVFPHQGSVKFVQTSWRMSIPGLPSSRHEDKAPASPKVLRDKKAVPDADPPSIEDINQLYQFFDNSAKLIVLTGAGISTECGIPDYRSPNGAYSSGFKPITHQQFVRSSRARRRYWARSYAGWRRFMAAQPNPAHFALASLEKAGRIDCMITQNVDRLHHRAGSNPLELHGTVYTVVCLDCGFSFCRDLFQDQVKALNPKWAEAIESLDYGSPGSDRSFGMKQRPDGDIEIDEKFWEEDFHIPTCQKCNGVLKPDVSTSLSLIEVNSISIFFTLVPADDYDE
cccccccccccccccEEEEEcccHHHHHccccccccHHHHHHHHHHHHHHHHHcccccccccccEEEEEEccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHccccEEEEEccccccccccccccccccccccccccccHHHHHHcHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHcccccEEEEcccccHHHHcccccEEEcccccEEEEccccccccHHHHHHHHHHHcccHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccEEEccccccHHHHHHHHHHHHHccccc
ccEEEEccccccccccEEEEccHHHHHHHHHHHEEEEEEccccccccccHHHccccEEEEccccEEEEEccEEEccccccccccccHHHHHHHHccccccccccccccHHHHHHHHHHHHccccEEEEEcccEcccccccccccccccccccccccEHHHHcccHHHHHHHHHHHHcccHHHHcccccHHHHHHHHHHHcccEEEEEEcccccHHHHccccEEEEccccEEEEEEcccccccHHHHHHHHHHHcccHHHHHHccccccccccccccccEcccccccccHHHHHHcccccccccccccccccEEEEcccccHHHHHHHHHHHHHccccc
mpifkfqgkfnqknttmllrlpffsasrnssgMLARVKSEIVQSSIKAQQLLSkgrrvfphqgsvkfVQTSwrmsipglpssrhedkapaspkvlrdkkavpdadppsiedINQLYQFFDNSAKLIVLTGagistecgipdyrspngayssgfkpithqqfVRSSRARRRYWARSYAGWRRfmaaqpnpaHFALASLekagridcmitqnvdrlhhragsnplelhgTVYTVVCLDCGFSFCRDLFQDQVKALNPKWAEAiesldygspgsdrsfgmkqrpdgdieidekfweedfhiptcqkcngvlkpdvstslSLIEVNSISIFftlvpaddyde
mpifkfqgkfnqknttMLLRLPFFSASRNSSGMLARVKSEIVQSSIKAQQLlskgrrvfphqgsvkfvqtsWRMSipglpssrhedkapaspkvlrdkkavpdADPPSIEDINQLYQFFDNSAKLIVLTGAGISTECGIPDYRSPNGayssgfkpithqqfvrssrarRRYWARSYAGWRRFMAAQPNPAHFALASLEKAGRIDCMITQNVDRLHHRAGSNPLELHGTVYTVVCLDCGFSFCRDLFQDQVKALNPKWAEAIEsldygspgsdrsfgmKQRPDGDIEIDEKFWEEDFHIPTCQKCNGVLKPDVSTSLSLIevnsisifftlvpaddyde
MPIFKFQGKFNQKNTTMLLRLPFFSASRNSSGMLARVKSEIVQSSIKAQQLLSKGRRVFPHQGSVKFVQTSWRMSIPGLPSSRHEDKAPASPKVLRDKKAVPDADPPSIEDINQLYQFFDNSAKLIVLTGAGISTECGIPDYRSPNGAYSSGFKPITHQQFVrssrarrrywarsyagwrrFMAAQPNPAHFALASLEKAGRIDCMITQNVDRLHHRAGSNPLELHGTVYTVVCLDCGFSFCRDLFQDQVKALNPKWAEAIESLDYGSPGSDRSFGMKQRPDGDIEIDEKFWEEDFHIPTCQKCNGVLKPDVSTSLSLIEVNSISIFFTLVPADDYDE
*********F**KNTTMLLRLPFFS*******************************RVFPHQGSVKFVQTSWR*************************************DINQLYQFFDNSAKLIVLTGAGISTECGIPDYRSPNGAYSSGFKPITHQQFVRSSRARRRYWARSYAGWRRFMAAQPNPAHFALASLEKAGRIDCMITQNVDRLHHRAGSNPLELHGTVYTVVCLDCGFSFCRDLFQDQVKALNPKWAEAIESL********************IEIDEKFWEEDFHIPTCQKCNGVLKPDVSTSLSLIEVNSISIFFTLVP******
*PIFKF*GKFNQKNTTMLLRLPFFSASRNSSGMLARVKS***********************GSVKFVQTSWRMSIPG******************************IEDINQLYQFFDNSAKLIVLTGAGISTECGIPDYRSPNGAYSSGFKPITHQQFVRSSRARRRYWARSYAGWRRFMAAQPNPAHFALASLEKAGRIDCMITQNVDRLHHRAGSNPLELHGTVYTVVCLDCGFSFCRDLFQDQVKALNPKWAEAIESLDYGSPGSDRSFGMKQRPDGDIEIDEKFWEEDFHIPTCQKCNGVLKPDVSTSLSLIEVNSISIFFTLVPADDY**
MPIFKFQGKFNQKNTTMLLRLPFFSASRNSSGMLARVKSEIVQSSIKAQQLLSKGRRVFPHQGSVKFVQTSWRMSIPGL*************************DPPSIEDINQLYQFFDNSAKLIVLTGAGISTECGIPDYRSPNGAYSSGFKPITHQQFVRSSRARRRYWARSYAGWRRFMAAQPNPAHFALASLEKAGRIDCMITQNVDRLHHRAGSNPLELHGTVYTVVCLDCGFSFCRDLFQDQVKALNPKWAEAIESLDYGSPGSDRSFGMKQRPDGDIEIDEKFWEEDFHIPTCQKCNGVLKPDVSTSLSLIEVNSISIFFTLVPADDYDE
MPIFKFQGKFNQKNTTMLLRLPFFSASRNSSGMLARVKSEIVQSSIKAQQLLSKGRRVFPHQGSVKFVQTSWRMSIPGLPSSRHEDKAPASPKVLRDKKAVPDADPPSIEDINQLYQFFDNSAKLIVLTGAGISTECGIPDYRSPNGAYSSGFKPITHQQFVRSSRARRRYWARSYAGWRRFMAAQPNPAHFALASLEKAGRIDCMITQNVDRLHHRAGSNPLELHGTVYTVVCLDCGFSFCRDLFQDQVKALNPKWAEAIESLDY****S***FGMKQRPDGDIEIDEKFWEEDFHIPTCQKCNGVLKPDVSTSLSLIEVNSISIFFTLVPAD****
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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MPIFKFQGKFNQKNTTMLLRLPFFSASRNSSGMLARVKSEIVQSSIKAQQLLSKGRRVFPHQGSVKFVQTSWRMSIPGLPSSRHEDKAPASPKVLRDKKAVPDADPPSIEDINQLYQFFDNSAKLIVLTGAGISTECGIPDYRSPNGAYSSGFKPITHQQFVRSSRARRRYWARSYAGWRRFMAAQPNPAHFALASLEKAGRIDCMITQNVDRLHHRAGSNPLELHGTVYTVVCLDCGFSFCRDLFQDQVKALNPKWAEAIESLDYGSPGSDRSFGMKQRPDGDIEIDEKFWEEDFHIPTCQKCNGVLKPDVSTSLSLIEVNSISIFFTLVPADDYDE
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query338 2.2.26 [Sep-21-2011]
Q94AQ6373 NAD-dependent protein dea yes no 0.831 0.753 0.714 1e-119
Q8IRR5312 NAD-dependent protein dea yes no 0.588 0.637 0.444 2e-46
Q1JQC6315 NAD-dependent protein dea yes no 0.579 0.622 0.441 7e-46
Q8R216333 NAD-dependent protein dea yes no 0.579 0.588 0.446 1e-45
Q9Y6E7314 NAD-dependent protein dea yes no 0.579 0.624 0.451 6e-45
F4P804305 NAD-dependent protein dea N/A no 0.562 0.622 0.442 2e-40
Q8PQK3293 NAD-dependent protein dea yes no 0.562 0.648 0.425 3e-38
Q8FUC8281 NAD-dependent protein dea no no 0.556 0.669 0.415 3e-38
Q89EA6273 NAD-dependent protein dea yes no 0.535 0.663 0.427 2e-37
Q8PDM9293 NAD-dependent protein dea yes no 0.535 0.617 0.422 9e-37
>sp|Q94AQ6|SIR4_ARATH NAD-dependent protein deacetylase SRT2 OS=Arabidopsis thaliana GN=SRT2 PE=2 SV=1 Back     alignment and function desciption
 Score =  429 bits (1102), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 203/284 (71%), Positives = 238/284 (83%), Gaps = 3/284 (1%)

Query: 29  NSSGMLARVKSEIVQSSIKAQQLLSKGRRVFPHQGSVKFVQTSWRMSIPGLPSSRHEDKA 88
           N   +   V +++  S    + L S G  V   +G  +FV+T+ R+SIPG  S  +E KA
Sbjct: 2   NMRRVFGGVSTDLFPSRSMYRPLQSGGNLVMLFKGCRRFVRTTCRVSIPG-GSLGNESKA 60

Query: 89  PASPKVLRDKKAVPDADPPSIEDINQLYQFFDNSAKLIVLTGAGISTECGIPDYRSPNGA 148
           P  P+ LRD+K VPDADPP++EDI++LY+ F+ S++L +LTGAG+STECGIPDYRSPNGA
Sbjct: 61  P--PRFLRDRKIVPDADPPNMEDIHKLYRLFEQSSRLTILTGAGVSTECGIPDYRSPNGA 118

Query: 149 YSSGFKPITHQQFVRSSRARRRYWARSYAGWRRFMAAQPNPAHFALASLEKAGRIDCMIT 208
           YSSGFKPITHQ+F RSSRARRRYWARSYAGWRRF AAQP PAH ALASLEKAGRI+ MIT
Sbjct: 119 YSSGFKPITHQEFTRSSRARRRYWARSYAGWRRFTAAQPGPAHTALASLEKAGRINFMIT 178

Query: 209 QNVDRLHHRAGSNPLELHGTVYTVVCLDCGFSFCRDLFQDQVKALNPKWAEAIESLDYGS 268
           QNVDRLHHRAGS+PLELHGTVYTV+CL+CGFSF RDLFQDQ+KA+NPKWAEAIES+D+G 
Sbjct: 179 QNVDRLHHRAGSDPLELHGTVYTVMCLECGFSFPRDLFQDQLKAINPKWAEAIESIDHGD 238

Query: 269 PGSDRSFGMKQRPDGDIEIDEKFWEEDFHIPTCQKCNGVLKPDV 312
           PGS++SFGMKQRPDGDIEIDEKFWEE FHIP C+KC GVLKPDV
Sbjct: 239 PGSEKSFGMKQRPDGDIEIDEKFWEEGFHIPVCEKCKGVLKPDV 282
NAD-dependent protein deacetylase which modulates the activities of several enzymes which are inactive in their acetylated form (By similarity). Negatively regulates plant basal defense against plant pathogens, possibly by suppressing salicylic acid biosynthesis.
Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 5EC: .EC: 1EC: .EC: -
>sp|Q8IRR5|SIR4_DROME NAD-dependent protein deacetylase Sirt4 OS=Drosophila melanogaster GN=Sirt4 PE=2 SV=2 Back     alignment and function description
>sp|Q1JQC6|SIR4_BOVIN NAD-dependent protein deacetylase sirtuin-4 OS=Bos taurus GN=SIRT4 PE=2 SV=1 Back     alignment and function description
>sp|Q8R216|SIR4_MOUSE NAD-dependent protein deacetylase sirtuin-4 OS=Mus musculus GN=Sirt4 PE=1 SV=3 Back     alignment and function description
>sp|Q9Y6E7|SIR4_HUMAN NAD-dependent protein deacetylase sirtuin-4 OS=Homo sapiens GN=SIRT4 PE=1 SV=1 Back     alignment and function description
>sp|F4P804|SIR4_BATDJ NAD-dependent protein deacetylase SIR4 OS=Batrachochytrium dendrobatidis (strain JAM81 / FGSC 10211) GN=BATDEDRAFT_20316 PE=3 SV=1 Back     alignment and function description
>sp|Q8PQK3|NPD_XANAC NAD-dependent protein deacetylase OS=Xanthomonas axonopodis pv. citri (strain 306) GN=cobB PE=3 SV=2 Back     alignment and function description
>sp|Q8FUC8|NPD1_COREF NAD-dependent protein deacetylase 1 OS=Corynebacterium efficiens (strain DSM 44549 / YS-314 / AJ 12310 / JCM 11189 / NBRC 100395) GN=cobB1 PE=3 SV=2 Back     alignment and function description
>sp|Q89EA6|NPD2_BRAJA NAD-dependent protein deacetylase 2 OS=Bradyrhizobium japonicum (strain USDA 110) GN=cobB2 PE=3 SV=2 Back     alignment and function description
>sp|Q8PDM9|NPD_XANCP NAD-dependent protein deacetylase OS=Xanthomonas campestris pv. campestris (strain ATCC 33913 / NCPPB 528 / LMG 568) GN=cobB PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query338
359466801382 sirtuin 2 [Vitis vinifera] 0.834 0.738 0.729 1e-119
296082598421 unnamed protein product [Vitis vinifera] 0.834 0.669 0.726 1e-118
224081046352 histone deacetylase [Populus trichocarpa 0.766 0.735 0.774 1e-118
145334337376 sirtuin 2 [Arabidopsis thaliana] gi|3320 0.837 0.752 0.713 1e-118
297806957356 hypothetical protein ARALYDRAFT_350148 [ 0.766 0.727 0.772 1e-117
18415923373 sirtuin 2 [Arabidopsis thaliana] gi|3068 0.831 0.753 0.714 1e-117
225438383399 PREDICTED: NAD-dependent ADP-ribosyltran 0.801 0.679 0.751 1e-117
42573313354 sirtuin 2 [Arabidopsis thaliana] gi|2224 0.766 0.731 0.763 1e-117
356507447393 PREDICTED: NAD-dependent ADP-ribosyltran 0.816 0.702 0.708 1e-117
42570509324 sirtuin 2 [Arabidopsis thaliana] gi|3320 0.831 0.867 0.714 1e-117
>gi|359466801|gb|AEV46831.1| sirtuin 2 [Vitis vinifera] Back     alignment and taxonomy information
 Score =  433 bits (1114), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 208/285 (72%), Positives = 242/285 (84%), Gaps = 3/285 (1%)

Query: 28  RNSSGMLARVKSEIVQSSIKAQQLLSKGRRVFPHQGSVKFVQTSWRMSIPGLPSSRHEDK 87
           R+   +L    ++ +QSS K  Q L + R V P Q SVKFVQTS R+S+PG  SS  E K
Sbjct: 10  RSVRKVLGTAVTDTIQSSSKNWQSLFRVRSVLPFQDSVKFVQTSCRISVPG-TSSGSEQK 68

Query: 88  APASPKVLRDKKAVPDADPPSIEDINQLYQFFDNSAKLIVLTGAGISTECGIPDYRSPNG 147
            P++   LRDKK VP++DPPSIEDI  LYQFFD+S+K++VLTGAGISTECGIPDYRSPNG
Sbjct: 69  VPSN--FLRDKKLVPESDPPSIEDIKFLYQFFDSSSKVVVLTGAGISTECGIPDYRSPNG 126

Query: 148 AYSSGFKPITHQQFVRSSRARRRYWARSYAGWRRFMAAQPNPAHFALASLEKAGRIDCMI 207
           AYSSG+KPITHQ+FVRSS+ARRRYWARSYAGW+RF+AAQP  +H ALASLEKAGRI+ +I
Sbjct: 127 AYSSGYKPITHQEFVRSSKARRRYWARSYAGWKRFIAAQPGASHIALASLEKAGRINYII 186

Query: 208 TQNVDRLHHRAGSNPLELHGTVYTVVCLDCGFSFCRDLFQDQVKALNPKWAEAIESLDYG 267
           TQNVDRLHHRAGS+PLELHGTVY+VVCLDCG+   R+LFQD++KALNPKWA AIE+L + 
Sbjct: 187 TQNVDRLHHRAGSSPLELHGTVYSVVCLDCGYLINRNLFQDELKALNPKWAAAIENLKHD 246

Query: 268 SPGSDRSFGMKQRPDGDIEIDEKFWEEDFHIPTCQKCNGVLKPDV 312
           SPGSD+SFGMKQRPDGDIEIDEKFWEE+F IPTCQKC GVLKPDV
Sbjct: 247 SPGSDKSFGMKQRPDGDIEIDEKFWEENFCIPTCQKCKGVLKPDV 291

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|296082598|emb|CBI21603.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|224081046|ref|XP_002306275.1| histone deacetylase [Populus trichocarpa] gi|222855724|gb|EEE93271.1| histone deacetylase [Populus trichocarpa] Back     alignment and taxonomy information
>gi|145334337|ref|NP_001078550.1| sirtuin 2 [Arabidopsis thaliana] gi|332003977|gb|AED91360.1| sirtuin 2 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297806957|ref|XP_002871362.1| hypothetical protein ARALYDRAFT_350148 [Arabidopsis lyrata subsp. lyrata] gi|297317199|gb|EFH47621.1| hypothetical protein ARALYDRAFT_350148 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|18415923|ref|NP_568207.1| sirtuin 2 [Arabidopsis thaliana] gi|30682583|ref|NP_850795.1| sirtuin 2 [Arabidopsis thaliana] gi|75249793|sp|Q94AQ6.1|SIR4_ARATH RecName: Full=NAD-dependent protein deacetylase SRT2; AltName: Full=Regulatory protein SIR2 homolog 2; Flags: Precursor gi|15028033|gb|AAK76547.1| putative SIR2-family protein [Arabidopsis thaliana] gi|21689769|gb|AAM67528.1| putative SIR2-family protein [Arabidopsis thaliana] gi|332003972|gb|AED91355.1| sirtuin 2 [Arabidopsis thaliana] gi|332003973|gb|AED91356.1| sirtuin 2 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|225438383|ref|XP_002274454.1| PREDICTED: NAD-dependent ADP-ribosyltransferase sirtuin-4-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|42573313|ref|NP_974753.1| sirtuin 2 [Arabidopsis thaliana] gi|222423276|dbj|BAH19614.1| AT5G09230 [Arabidopsis thaliana] gi|332003975|gb|AED91358.1| sirtuin 2 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|356507447|ref|XP_003522478.1| PREDICTED: NAD-dependent ADP-ribosyltransferase sirtuin-4-like [Glycine max] Back     alignment and taxonomy information
>gi|42570509|ref|NP_850796.2| sirtuin 2 [Arabidopsis thaliana] gi|332003974|gb|AED91357.1| sirtuin 2 [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query338
TAIR|locus:2184717373 SRT2 "AT5G09230" [Arabidopsis 0.831 0.753 0.647 3.2e-97
UNIPROTKB|F1PU57312 SIRT4 "NAD-dependent protein d 0.579 0.628 0.404 2.4e-35
RGD|1310413311 Sirt4 "sirtuin 4" [Rattus norv 0.579 0.630 0.4 2.4e-35
MGI|MGI:1922637333 Sirt4 "sirtuin 4 (silent matin 0.579 0.588 0.4 4e-35
UNIPROTKB|Q1JQC6315 SIRT4 "NAD-dependent protein d 0.579 0.622 0.4 5.1e-35
UNIPROTKB|F1NB70294 SIRT4 "Uncharacterized protein 0.576 0.663 0.412 8.3e-35
UNIPROTKB|F1RJK2314 SIRT4 "NAD-dependent protein d 0.647 0.697 0.369 1.7e-34
FB|FBgn0029783312 Sirt4 "Sirt4" [Drosophila mela 0.579 0.628 0.404 2.2e-34
UNIPROTKB|Q9Y6E7314 SIRT4 "NAD-dependent protein d 0.579 0.624 0.409 2.2e-34
ZFIN|ZDB-GENE-041010-65310 zgc:103539 "zgc:103539" [Danio 0.624 0.680 0.356 2.3e-30
TAIR|locus:2184717 SRT2 "AT5G09230" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 966 (345.1 bits), Expect = 3.2e-97, P = 3.2e-97
 Identities = 184/284 (64%), Positives = 219/284 (77%)

Query:    29 NSSGMLARVKSEIVQSSIKAQQLLSKGRRVFPHQGSVKFVQTSWRMSIPGLPSSRHEDKA 88
             N   +   V +++  S    + L S G  V   +G  +FV+T+ R+SIPG  S  +E KA
Sbjct:     2 NMRRVFGGVSTDLFPSRSMYRPLQSGGNLVMLFKGCRRFVRTTCRVSIPG-GSLGNESKA 60

Query:    89 PASPKVLRDKKAVPDADPPSIEDINQLYQFFDNSAKLIVLTGAGISTECGIPDYRSPNGA 148
             P  P+ LRD+K VPDADPP++EDI++LY+ F+ S++L +LTGAG+STECGIPDYRSPNGA
Sbjct:    61 P--PRFLRDRKIVPDADPPNMEDIHKLYRLFEQSSRLTILTGAGVSTECGIPDYRSPNGA 118

Query:   149 YSSGFKPITHQQFVXXXXXXXXXXXXXXXXXXXFMAAQPNPAHFALASLEKAGRIDCMIT 208
             YSSGFKPITHQ+F                    F AAQP PAH ALASLEKAGRI+ MIT
Sbjct:   119 YSSGFKPITHQEFTRSSRARRRYWARSYAGWRRFTAAQPGPAHTALASLEKAGRINFMIT 178

Query:   209 QNVDRLHHRAGSNPLELHGTVYTVVCLDCGFSFCRDLFQDQVKALNPKWAEAIESLDYGS 268
             QNVDRLHHRAGS+PLELHGTVYTV+CL+CGFSF RDLFQDQ+KA+NPKWAEAIES+D+G 
Sbjct:   179 QNVDRLHHRAGSDPLELHGTVYTVMCLECGFSFPRDLFQDQLKAINPKWAEAIESIDHGD 238

Query:   269 PGSDRSFGMKQRPDGDIEIDEKFWEEDFHIPTCQKCNGVLKPDV 312
             PGS++SFGMKQRPDGDIEIDEKFWEE FHIP C+KC GVLKPDV
Sbjct:   239 PGSEKSFGMKQRPDGDIEIDEKFWEEGFHIPVCEKCKGVLKPDV 282
GO:0003677 "DNA binding" evidence=ISS
GO:0005677 "chromatin silencing complex" evidence=ISS
GO:0005737 "cytoplasm" evidence=ISM
GO:0006342 "chromatin silencing" evidence=ISS
GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS
GO:0006476 "protein deacetylation" evidence=IEA
GO:0008270 "zinc ion binding" evidence=IEA
GO:0070403 "NAD+ binding" evidence=IEA
GO:0005634 "nucleus" evidence=IDA
GO:0031348 "negative regulation of defense response" evidence=IMP
GO:0042742 "defense response to bacterium" evidence=IMP
UNIPROTKB|F1PU57 SIRT4 "NAD-dependent protein deacetylase sirtuin-4" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
RGD|1310413 Sirt4 "sirtuin 4" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
MGI|MGI:1922637 Sirt4 "sirtuin 4 (silent mating type information regulation 2 homolog) 4 (S. cerevisiae)" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|Q1JQC6 SIRT4 "NAD-dependent protein deacetylase sirtuin-4" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|F1NB70 SIRT4 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|F1RJK2 SIRT4 "NAD-dependent protein deacetylase sirtuin-4" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
FB|FBgn0029783 Sirt4 "Sirt4" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
UNIPROTKB|Q9Y6E7 SIRT4 "NAD-dependent protein deacetylase sirtuin-4" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-041010-65 zgc:103539 "zgc:103539" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q94AQ6SIR4_ARATH3, ., 5, ., 1, ., -0.71470.83130.7533yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.5.10.691

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
SRT901
histone deacetylase (352 aa)
(Populus trichocarpa)
Predicted Functional Partners:
HDA901
histone deacetylase (390 aa)
      • 0.404

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query338
cd01409260 cd01409, SIRT4, SIRT4: Eukaryotic and prokaryotic 1e-100
PRK05333285 PRK05333, PRK05333, NAD-dependent deacetylase; Pro 1e-67
cd01407218 cd01407, SIR2-fam, SIR2 family of proteins include 1e-53
cd00296222 cd00296, SIR2, SIR2 superfamily of proteins includ 1e-43
PRK00481242 PRK00481, PRK00481, NAD-dependent deacetylase; Pro 4e-39
COG0846250 COG0846, SIR2, NAD-dependent protein deacetylases, 2e-37
cd01413222 cd01413, SIR2_Af2, SIR2_Af2: Archaeal and prokaryo 2e-36
pfam02146177 pfam02146, SIR2, Sir2 family 5e-33
cd01412224 cd01412, SIRT5_Af1_CobB, SIRT5_Af1_CobB: Eukaryoti 6e-32
cd01410206 cd01410, SIRT7, SIRT7: Eukaryotic and prokaryotic 5e-30
PRK14138244 PRK14138, PRK14138, NAD-dependent deacetylase; Pro 2e-28
cd01411225 cd01411, SIR2H, SIR2H: Uncharacterized prokaryotic 4e-26
PTZ00408242 PTZ00408, PTZ00408, NAD-dependent deacetylase; Pro 7e-18
cd01408235 cd01408, SIRT1, SIRT1: Eukaryotic group (class1) w 2e-16
PTZ00409271 PTZ00409, PTZ00409, Sir2 (Silent Information Regul 3e-16
PTZ00410 349 PTZ00410, PTZ00410, NAD-dependent SIR2; Provisiona 1e-09
>gnl|CDD|238700 cd01409, SIRT4, SIRT4: Eukaryotic and prokaryotic group (class2) which includes human sirtuin SIRT4 and several bacterial homologs; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation Back     alignment and domain information 
 Score =  296 bits (761), Expect = e-100
 Identities = 108/199 (54%), Positives = 131/199 (65%), Gaps = 17/199 (8%)

Query: 115 LYQFFDNSAKLIVLTGAGISTECGIPDYRSPNGAYSSGFKPITHQQFVRSSRARRRYWAR 174
           L  F   S +L+VLTGAGISTE GIPDYRS  G YS  F+P+THQ+F+RS  AR+RYWAR
Sbjct: 1   LQDFVARSRRLLVLTGAGISTESGIPDYRSEGGLYSRTFRPMTHQEFMRSPAARQRYWAR 60

Query: 175 SYAGWRRFMAAQPNPAHFALASLEKAGRIDCMITQNVDRLHHRAGS-NPLELHGTVYTVV 233
           S+ GW RF AAQPN AH ALA+LE AGR+  +ITQNVD LH +AGS N +ELHG+++ VV
Sbjct: 61  SFVGWPRFSAAQPNAAHRALAALEAAGRLHGLITQNVDGLHTKAGSRNVVELHGSLHRVV 120

Query: 234 CLDCGFSFCRDLFQDQVKALNPKWAEAIESLDYGSPGSDRSFGMKQRPDGDIEIDEKFWE 293
           CL CGF   R   QD+++ALNP +AE                   Q PDGD    E    
Sbjct: 121 CLSCGFRTPRAELQDRLEALNPGFAEQAAG---------------QAPDGD-VDLEDEQV 164

Query: 294 EDFHIPTCQKCNGVLKPDV 312
             F +P C++C GVLKPDV
Sbjct: 165 AGFRVPECERCGGVLKPDV 183

Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span. Length = 260
>gnl|CDD|235415 PRK05333, PRK05333, NAD-dependent deacetylase; Provisional Back     alignment and domain information
>gnl|CDD|238698 cd01407, SIR2-fam, SIR2 family of proteins includes silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation, where the acetyl group from the lysine epsilon-amino group is transferred to the ADP-ribose moiety of NAD+, producing nicotinamide and the novel metabolite O-acetyl-ADP-ribose Back     alignment and domain information
>gnl|CDD|238184 cd00296, SIR2, SIR2 superfamily of proteins includes silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation, where the acetyl group from the lysine epsilon-amino group is transferred to the ADP-ribose moiety of NAD+, producing nicotinamide and the novel metabolite O-acetyl-ADP-ribose Back     alignment and domain information
>gnl|CDD|234777 PRK00481, PRK00481, NAD-dependent deacetylase; Provisional Back     alignment and domain information
>gnl|CDD|223915 COG0846, SIR2, NAD-dependent protein deacetylases, SIR2 family [Transcription] Back     alignment and domain information
>gnl|CDD|238704 cd01413, SIR2_Af2, SIR2_Af2: Archaeal and prokaryotic group which includes Archaeoglobus fulgidus Sir2-Af2, Sulfolobus solfataricus ssSir2, and several bacterial homologs; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation Back     alignment and domain information
>gnl|CDD|216902 pfam02146, SIR2, Sir2 family Back     alignment and domain information
>gnl|CDD|238703 cd01412, SIRT5_Af1_CobB, SIRT5_Af1_CobB: Eukaryotic, archaeal and prokaryotic group (class3) which includes human sirtuin SIRT5, Archaeoglobus fulgidus Sir2-Af1, and E Back     alignment and domain information
>gnl|CDD|238701 cd01410, SIRT7, SIRT7: Eukaryotic and prokaryotic group (class4) which includes human sirtuin SIRT6, SIRT7, and several bacterial homologs; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation Back     alignment and domain information
>gnl|CDD|172627 PRK14138, PRK14138, NAD-dependent deacetylase; Provisional Back     alignment and domain information
>gnl|CDD|238702 cd01411, SIR2H, SIR2H: Uncharacterized prokaryotic Sir2 homologs from several gram positive bacterial species and Fusobacteria; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation Back     alignment and domain information
>gnl|CDD|240405 PTZ00408, PTZ00408, NAD-dependent deacetylase; Provisional Back     alignment and domain information
>gnl|CDD|238699 cd01408, SIRT1, SIRT1: Eukaryotic group (class1) which includes human sirtuins SIRT1-3 and yeast Hst1-4; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation Back     alignment and domain information
>gnl|CDD|173599 PTZ00409, PTZ00409, Sir2 (Silent Information Regulator) protein; Provisional Back     alignment and domain information
>gnl|CDD|185600 PTZ00410, PTZ00410, NAD-dependent SIR2; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 338
KOG2683305 consensus Sirtuin 4 and related class II sirtuins 100.0
cd01409260 SIRT4 SIRT4: Eukaryotic and prokaryotic group (cla 100.0
PRK05333285 NAD-dependent deacetylase; Provisional 100.0
COG0846250 SIR2 NAD-dependent protein deacetylases, SIR2 fami 100.0
PTZ00409271 Sir2 (Silent Information Regulator) protein; Provi 100.0
PRK14138244 NAD-dependent deacetylase; Provisional 100.0
cd01413222 SIR2_Af2 SIR2_Af2: Archaeal and prokaryotic group 100.0
PRK00481242 NAD-dependent deacetylase; Provisional 100.0
cd01411225 SIR2H SIR2H: Uncharacterized prokaryotic Sir2 homo 100.0
cd01408235 SIRT1 SIRT1: Eukaryotic group (class1) which inclu 100.0
cd01407218 SIR2-fam SIR2 family of proteins includes silent i 100.0
cd01410206 SIRT7 SIRT7: Eukaryotic and prokaryotic group (cla 100.0
PTZ00410 349 NAD-dependent SIR2; Provisional 100.0
cd01412224 SIRT5_Af1_CobB SIRT5_Af1_CobB: Eukaryotic, archaea 100.0
PTZ00408242 NAD-dependent deacetylase; Provisional 100.0
PF02146178 SIR2: Sir2 family; InterPro: IPR003000 These seque 100.0
cd00296222 SIR2 SIR2 superfamily of proteins includes silent 100.0
KOG2684 412 consensus Sirtuin 5 and related class III sirtuins 100.0
KOG2682 314 consensus NAD-dependent histone deacetylases and c 99.98
KOG1905 353 consensus Class IV sirtuins (SIR2 family) [Chromat 99.95
cd01406242 SIR2-like Sir2-like: Prokaryotic group of uncharac 98.95
PF07295146 DUF1451: Protein of unknown function (DUF1451); In 90.36
PRK11032160 hypothetical protein; Provisional 90.06
PF13289143 SIR2_2: SIR2-like domain 85.4
smart0083441 CxxC_CXXC_SSSS Putative regulatory protein. CxxC_C 83.65
PF09845131 DUF2072: Zn-ribbon containing protein (DUF2072); I 81.17
>KOG2683 consensus Sirtuin 4 and related class II sirtuins (SIR2 family) [Chromatin structure and dynamics; Transcription] Back     alignment and domain information 
Probab=100.00  E-value=2.7e-59  Score=428.59  Aligned_cols=240  Identities=57%  Similarity=0.963  Sum_probs=223.7

Q ss_pred             CCCCCCCCCCCcccccCCccccCCCCCCHHHHHHHHHHHhcCCcEEEEECCcccccCCCCCccCCC-CCCC-CCCCCCCH
Q 019598           81 SSRHEDKAPASPKVLRDKKAVPDADPPSIEDINQLYQFFDNSAKLIVLTGAGISTECGIPDYRSPN-GAYS-SGFKPITH  158 (338)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~i~~L~~~I~~Ak~IVVlTGAGISaaSGIPdFR~~~-Gly~-~~~~~~~~  158 (338)
                      ++++.++.|  ++.++..+++|++++..+++|.+|..+|..+++++|+|||||||+|||||||+++ |+|. ..++|+++
T Consensus         6 ~l~~~s~~p--~s~~~~~k~VP~~~pl~e~~ikkl~~li~~~~rllvlTGAGISTEsGIPDYRS~~VGlYars~~kPI~h   83 (305)
T KOG2683|consen    6 SLGNESKAP--PSFLMARKYVPHADPLCEEDIKKLYRLIGTSDRLLVLTGAGISTESGIPDYRSEDVGLYARSAHKPIQH   83 (305)
T ss_pred             ccccCCCCC--chhhhhccccCCCCCCCHHHHHHHHHHHccCCceEEEecCcccccCCCCcccCCCccceeecCCCcchH
Confidence            567777766  6778889999999999999999999999999999999999999999999999998 9998 58999999


Q ss_pred             HHHhhchHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHcCCcceeeecccchhHhhhCCC-eEEeecccCceecCCC
Q 019598          159 QQFVRSSRARRRYWARSYAGWRRFMAAQPNPAHFALASLEKAGRIDCMITQNVDRLHHRAGSN-PLELHGTVYTVVCLDC  237 (338)
Q Consensus       159 ~~f~~~~~~~~~~wa~~~~~~~~~~~a~Pn~~H~aLa~Le~~gkl~~ViTQNID~Lh~rAG~k-viELHGsl~~~qC~~C  237 (338)
                      ++|..+...+++||++.|.+|.++..++||.+|++|+.||+.|++.++||||||+||.|||++ +.||||+...+.|..|
T Consensus        84 qdf~rSs~~RqRYWaRnf~gWprFs~aqPn~~H~ALs~wE~~~r~~wliTQNVD~LH~kAGS~~~tElHG~~~~VkCl~C  163 (305)
T KOG2683|consen   84 QDFVRSSRCRQRYWARNFVGWPRFSAAQPNPAHYALSKWEKAGRFQWLITQNVDRLHTKAGSRMVTELHGSAYQVKCLSC  163 (305)
T ss_pred             HHHhhhhHHHHHHHHHhhcCcchhhhcCCCchhHHHHHHhhcCceEEEeeccchhhhhhccccceeeeccceEEEEeccc
Confidence            999999999999999999999999999999999999999999999999999999999999995 9999999999999999


Q ss_pred             CcccchhhHHHHHHhhChhhHHHHhhhcCCCCCCCCCcCcccCCCCCcccccccccccCCCCCCCCCCCeeccceeecCC
Q 019598          238 GFSFCRDLFQDQVKALNPKWAEAIESLDYGSPGSDRSFGMKQRPDGDIEIDEKFWEEDFHIPTCQKCNGVLKPDVSTSLS  317 (338)
Q Consensus       238 ~~~~~r~~~~~~l~~~np~~~~~~~~~~~~~~~~~~~~~~~~~pdgd~~i~~~~~~~~~~iP~Cp~CgG~LrP~VV~FGE  317 (338)
                      ++..+|..||++|+.+||.|.++...     |+       .++||||++||.++ +..|.+|.|++|||.|||+|+||||
T Consensus       164 ~y~~~R~~~Qdrl~~~NP~fke~~~~-----~~-------~~~pDgDv~lpl~~-e~gF~IPeC~~CgG~lKpdV~fFGd  230 (305)
T KOG2683|consen  164 GYIEPRQTFQDRLKYLNPGFKEAIVS-----PG-------HQRPDGDVELPLEF-EEGFQIPECEKCGGLLKPDVTFFGD  230 (305)
T ss_pred             CcccchHHHHHHHHhcCcchhhhccC-----cc-------ccCCCCCeecchhh-hhcccCCcccccCCccCCceEEecC
Confidence            99999999999999999999987542     21       37899999999988 6789999999999999999999999


Q ss_pred             CCChhhHHHHhhccccCC
Q 019598          318 LIEVNSISIFFTLVPADD  335 (338)
Q Consensus       318 ~l~~~~~~~~~~~~~~~~  335 (338)
                      +++.++++.+.+-.-..|
T Consensus       231 nvn~dkv~~~~~~v~e~d  248 (305)
T KOG2683|consen  231 NVNKDKVTFCMEKVKECD  248 (305)
T ss_pred             CCChHHHHHHHHHHhccC
Confidence            999999999887665544

>cd01409 SIRT4 SIRT4: Eukaryotic and prokaryotic group (class2) which includes human sirtuin SIRT4 and several bacterial homologs; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation Back     alignment and domain information
>PRK05333 NAD-dependent deacetylase; Provisional Back     alignment and domain information
>COG0846 SIR2 NAD-dependent protein deacetylases, SIR2 family [Transcription] Back     alignment and domain information
>PTZ00409 Sir2 (Silent Information Regulator) protein; Provisional Back     alignment and domain information
>PRK14138 NAD-dependent deacetylase; Provisional Back     alignment and domain information
>cd01413 SIR2_Af2 SIR2_Af2: Archaeal and prokaryotic group which includes Archaeoglobus fulgidus Sir2-Af2, Sulfolobus solfataricus ssSir2, and several bacterial homologs; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation Back     alignment and domain information
>PRK00481 NAD-dependent deacetylase; Provisional Back     alignment and domain information
>cd01411 SIR2H SIR2H: Uncharacterized prokaryotic Sir2 homologs from several gram positive bacterial species and Fusobacteria; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation Back     alignment and domain information
>cd01408 SIRT1 SIRT1: Eukaryotic group (class1) which includes human sirtuins SIRT1-3 and yeast Hst1-4; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation Back     alignment and domain information
>cd01407 SIR2-fam SIR2 family of proteins includes silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation, where the acetyl group from the lysine epsilon-amino group is transferred to the ADP-ribose moiety of NAD+, producing nicotinamide and the novel metabolite O-acetyl-ADP-ribose Back     alignment and domain information
>cd01410 SIRT7 SIRT7: Eukaryotic and prokaryotic group (class4) which includes human sirtuin SIRT6, SIRT7, and several bacterial homologs; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation Back     alignment and domain information
>PTZ00410 NAD-dependent SIR2; Provisional Back     alignment and domain information
>cd01412 SIRT5_Af1_CobB SIRT5_Af1_CobB: Eukaryotic, archaeal and prokaryotic group (class3) which includes human sirtuin SIRT5, Archaeoglobus fulgidus Sir2-Af1, and E Back     alignment and domain information
>PTZ00408 NAD-dependent deacetylase; Provisional Back     alignment and domain information
>PF02146 SIR2: Sir2 family; InterPro: IPR003000 These sequences represent the Sirtuin (Sir2-related) family of NAD+-dependent deacetylases Back     alignment and domain information
>cd00296 SIR2 SIR2 superfamily of proteins includes silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation, where the acetyl group from the lysine epsilon-amino group is transferred to the ADP-ribose moiety of NAD+, producing nicotinamide and the novel metabolite O-acetyl-ADP-ribose Back     alignment and domain information
>KOG2684 consensus Sirtuin 5 and related class III sirtuins (SIR2 family) [Chromatin structure and dynamics; Transcription] Back     alignment and domain information
>KOG2682 consensus NAD-dependent histone deacetylases and class I sirtuins (SIR2 family) [Chromatin structure and dynamics; Transcription] Back     alignment and domain information
>KOG1905 consensus Class IV sirtuins (SIR2 family) [Chromatin structure and dynamics; Transcription] Back     alignment and domain information
>cd01406 SIR2-like Sir2-like: Prokaryotic group of uncharacterized Sir2-like proteins which lack certain key catalytic residues and conserved zinc binding cysteines; and are members of the SIR2 superfamily of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation Back     alignment and domain information
>PF07295 DUF1451: Protein of unknown function (DUF1451); InterPro: IPR009912 This family consists of several hypothetical bacterial proteins of around 160 residues in length Back     alignment and domain information
>PRK11032 hypothetical protein; Provisional Back     alignment and domain information
>PF13289 SIR2_2: SIR2-like domain Back     alignment and domain information
>smart00834 CxxC_CXXC_SSSS Putative regulatory protein Back     alignment and domain information
>PF09845 DUF2072: Zn-ribbon containing protein (DUF2072); InterPro: IPR018645 This archaeal Zinc-ribbon containing proteins have no known function Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query338
1yc5_A246 Sir2-P53 Peptide-Nicotinamide Length = 246 4e-18
1ma3_A253 Structure Of A Sir2 Enzyme Bound To An Acetylated P 5e-18
1m2k_A249 Sir2 Homologue F159a Mutant-Adp Ribose Complex Leng 1e-17
1m2g_A249 Sir2 Homologue-Adp Ribose Complex Length = 249 1e-17
1ici_A256 Crystal Structure Of A Sir2 Homolog-Nad Complex Len 1e-17
1m2n_A249 Sir2 Homologues (D102gF159AR170A) MUTANT-2'-O-Acety 2e-17
2h4h_A246 Sir2 H116y Mutant-P53 Peptide-Nad Length = 246 2e-17
1m2h_A249 Sir2 Homologue S24a Mutant-adp Ribose Complex Lengt 3e-17
2h59_A246 Sir2 H116a-Deacetylated P53 Peptide-3'-O-Acetyl Adp 5e-17
1m2j_A249 Sir2 Homologue H80n Mutant-Adp Ribose Complex Lengt 9e-17
3k35_A318 Crystal Structure Of Human Sirt6 Length = 318 3e-14
3pki_A 355 Human Sirt6 Crystal Structure In Complex With Adp R 6e-14
4g1c_A267 Human Sirt5 Bound To Succ-Idh2 And Carba-Nad Length 2e-11
3rig_A273 Sirt5 Is An Nad-Dependent Protein Lysine Demalonyla 2e-11
4hda_A275 Crystal Structure Of Human Sirt5 In Complex With Fl 2e-11
2nyr_A271 Crystal Structure Of Human Sirtuin Homolog 5 In Com 2e-11
2b4y_A271 Crystal Structure Of Human Sirtuin Homolog 5 Length 3e-11
3jwp_A265 Crystal Structure Of Plasmodium Falciparum Sir2a (P 3e-09
3u31_A290 Plasmodium Falciparum Sir2a Preferentially Hydrolyz 3e-09
1s5p_A235 Structure And Substrate Binding Properties Of Cobb, 3e-09
4i5i_A287 Crystal Structure Of The Sirt1 Catalytic Domain Bou 5e-09
3glr_A285 Crystal Structure Of Human Sirt3 With Acetyl-Lysine 5e-08
4hd8_A284 Crystal Structure Of Human Sirt3 In Complex With Fl 6e-08
4fvt_A274 Human Sirt3 Bound To Ac-Acs Peptide And Carba-Nad L 6e-08
4iao_A492 Crystal Structure Of Sir2 C543s Mutant In Complex W 1e-07
2hjh_A354 Crystal Structure Of The Sir2 Deacetylase Length = 2e-07
1q1a_A289 Structure Of The Yeast Hst2 Protein Deacetylase In 2e-07
1szc_A297 Structural Basis For Nicotinamide Cleavage And Adp- 2e-07
2od7_A308 Crystal Structure Of Yhst2 Bound To The Intermediat 2e-07
1q17_A300 Structure Of The Yeast Hst2 Protein Deacetylase In 2e-07
1q14_A 361 Structure And Autoregulation Of The Yeast Hst2 Homo 2e-07
2od2_A308 Crystal Structure Of Yhst2 I117f Mutant Bound To Ca 6e-07
1j8f_C323 Human Sirt2 Histone Deacetylase Length = 323 2e-06
1j8f_A323 Human Sirt2 Histone Deacetylase Length = 323 2e-06
>pdb|1YC5|A Chain A, Sir2-P53 Peptide-Nicotinamide Length = 246 Back     alignment and structure 
Iteration: 1

 Score = 89.0 bits (219), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 53/128 (41%), Positives = 69/128 (53%), Gaps = 6/128 (4%)
Query: 114 QLYQFFD--NSAKLIV-LTGAGISTECGIPDYRSPNGAYSSGFKPITHQQFVXXXXXXXX 170
           ++ +F D  N ++L V LTGAGIST  GIPD+R PNG Y    + +    F         
Sbjct: 2   KMKEFLDLLNESRLTVTLTGAGISTPSGIPDFRGPNGIYKKYSQNVFDIDFF--YSHPEE 59
Query: 171 XXXXXXXXXXXFMAAQPNPAHFALASLEKAGRIDCMITQNVDRLHHRAGSNP-LELHGTV 229
                       + A+PN AH  LA LE+ G I+ +ITQN+DRLH RAGS   +ELHG V
Sbjct: 60  FYRFAKEGIFPMLQAKPNLAHVLLAKLEEKGLIEAVITQNIDRLHQRAGSKKVIELHGNV 119
Query: 230 YTVVCLDC 237
               C+ C
Sbjct: 120 EEYYCVRC 127
>pdb|1MA3|A Chain A, Structure Of A Sir2 Enzyme Bound To An Acetylated P53 Peptide Length = 253 Back     alignment and structure
>pdb|1M2K|A Chain A, Sir2 Homologue F159a Mutant-Adp Ribose Complex Length = 249 Back     alignment and structure
>pdb|1M2G|A Chain A, Sir2 Homologue-Adp Ribose Complex Length = 249 Back     alignment and structure
>pdb|1ICI|A Chain A, Crystal Structure Of A Sir2 Homolog-Nad Complex Length = 256 Back     alignment and structure
>pdb|1M2N|A Chain A, Sir2 Homologues (D102gF159AR170A) MUTANT-2'-O-Acetyl Adp Ribose Complex Length = 249 Back     alignment and structure
>pdb|2H4H|A Chain A, Sir2 H116y Mutant-P53 Peptide-Nad Length = 246 Back     alignment and structure
>pdb|1M2H|A Chain A, Sir2 Homologue S24a Mutant-adp Ribose Complex Length = 249 Back     alignment and structure
>pdb|2H59|A Chain A, Sir2 H116a-Deacetylated P53 Peptide-3'-O-Acetyl Adp Ribose Length = 246 Back     alignment and structure
>pdb|1M2J|A Chain A, Sir2 Homologue H80n Mutant-Adp Ribose Complex Length = 249 Back     alignment and structure
>pdb|3K35|A Chain A, Crystal Structure Of Human Sirt6 Length = 318 Back     alignment and structure
>pdb|3PKI|A Chain A, Human Sirt6 Crystal Structure In Complex With Adp Ribose Length = 355 Back     alignment and structure
>pdb|4G1C|A Chain A, Human Sirt5 Bound To Succ-Idh2 And Carba-Nad Length = 267 Back     alignment and structure
>pdb|3RIG|A Chain A, Sirt5 Is An Nad-Dependent Protein Lysine Demalonylase And Desuccinylase Length = 273 Back     alignment and structure
>pdb|4HDA|A Chain A, Crystal Structure Of Human Sirt5 In Complex With Fluor-de-lys Peptide And Resveratrol Length = 275 Back     alignment and structure
>pdb|2NYR|A Chain A, Crystal Structure Of Human Sirtuin Homolog 5 In Complex With Suramin Length = 271 Back     alignment and structure
>pdb|2B4Y|A Chain A, Crystal Structure Of Human Sirtuin Homolog 5 Length = 271 Back     alignment and structure
>pdb|3JWP|A Chain A, Crystal Structure Of Plasmodium Falciparum Sir2a (Pf13_0152) In Complex With Amp Length = 265 Back     alignment and structure
>pdb|3U31|A Chain A, Plasmodium Falciparum Sir2a Preferentially Hydrolyzes Medium And Long Chain Fatty Acyl Lysine Length = 290 Back     alignment and structure
>pdb|1S5P|A Chain A, Structure And Substrate Binding Properties Of Cobb, A Sir2 Homolog Protein Deacetylase From Eschericia Coli Length = 235 Back     alignment and structure
>pdb|4I5I|A Chain A, Crystal Structure Of The Sirt1 Catalytic Domain Bound To Nad And An Ex527 Analog Length = 287 Back     alignment and structure
>pdb|3GLR|A Chain A, Crystal Structure Of Human Sirt3 With Acetyl-Lysine Acecs2 Peptide Length = 285 Back     alignment and structure
>pdb|4HD8|A Chain A, Crystal Structure Of Human Sirt3 In Complex With Fluor-de-lys Peptide And Piceatannol Length = 284 Back     alignment and structure
>pdb|4FVT|A Chain A, Human Sirt3 Bound To Ac-Acs Peptide And Carba-Nad Length = 274 Back     alignment and structure
>pdb|4IAO|A Chain A, Crystal Structure Of Sir2 C543s Mutant In Complex With Sid Domain Of Sir4 Length = 492 Back     alignment and structure
>pdb|2HJH|A Chain A, Crystal Structure Of The Sir2 Deacetylase Length = 354 Back     alignment and structure
>pdb|1Q1A|A Chain A, Structure Of The Yeast Hst2 Protein Deacetylase In Ternary Complex With 2'-O-Acetyl Adp Ribose And Histone Peptide Length = 289 Back     alignment and structure
>pdb|1SZC|A Chain A, Structural Basis For Nicotinamide Cleavage And Adp-Ribose Transfer By Nad+-Dependent Sir2 HistonePROTEIN DEACETYLASES Length = 297 Back     alignment and structure
>pdb|2OD7|A Chain A, Crystal Structure Of Yhst2 Bound To The Intermediate Analogue Adp-Hpd, And And Aceylated H4 Peptide Length = 308 Back     alignment and structure
>pdb|1Q17|A Chain A, Structure Of The Yeast Hst2 Protein Deacetylase In Ternary Complex With 2'-O-Acetyl Adp Ribose And Histone Peptide Length = 300 Back     alignment and structure
>pdb|1Q14|A Chain A, Structure And Autoregulation Of The Yeast Hst2 Homolog Of Sir2 Length = 361 Back     alignment and structure
>pdb|2OD2|A Chain A, Crystal Structure Of Yhst2 I117f Mutant Bound To Carba-Nad+ And An Acetylated H4 Peptide Length = 308 Back     alignment and structure
>pdb|1J8F|C Chain C, Human Sirt2 Histone Deacetylase Length = 323 Back     alignment and structure
>pdb|1J8F|A Chain A, Human Sirt2 Histone Deacetylase Length = 323 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query338
3riy_A273 NAD-dependent deacetylase sirtuin-5; desuccinylase 3e-68
1yc5_A246 NAD-dependent deacetylase; SIR2, sirtuin, SIR2TM, 2e-61
2hjh_A354 NAD-dependent histone deacetylase SIR2; protein, s 2e-60
3u31_A290 SIR2A, transcriptional regulatory protein SIR2 hom 1e-59
1ma3_A253 SIR2-AF2, transcriptional regulatory protein, SIR2 4e-57
3k35_A 318 NAD-dependent deacetylase sirtuin-6; rossmann fold 4e-53
3pki_A 355 NAD-dependent deacetylase sirtuin-6; ADP ribose, s 4e-52
1m2k_A249 Silent information regulator 2; protein-ligand com 2e-49
1q1a_A289 HST2 protein; ternary complex, histone deacetylase 5e-46
3glr_A285 NAD-dependent deacetylase sirtuin-3, mitochondria; 1e-44
1s5p_A235 NAD-dependent deacetylase; protein deacetylase, SI 7e-43
1q14_A 361 HST2 protein; histone deacetylase, hydrolase; 2.50 3e-40
1j8f_A323 SIRT2, sirtuin 2, isoform 1, silencing INFO; gene 5e-39
>3riy_A NAD-dependent deacetylase sirtuin-5; desuccinylase, demalonylase, posttranslational modification, binding domain, rossmann fold domain; HET: SLL NAD; 1.55A {Homo sapiens} PDB: 3rig_A* 2b4y_A* 2nyr_A* Length = 273 Back     alignment and structure
 Score =  214 bits (546), Expect = 3e-68
 Identities = 51/214 (23%), Positives = 87/214 (40%), Gaps = 35/214 (16%)

Query: 106 PPSIEDINQLYQFFDNSAKLIVLTGAGISTECGIPDYRSPNGAYSSGFKPITHQQFVRSS 165
            PS   +    +FF  +  +++++GAG+S E G+P +R   G +   ++       +  +
Sbjct: 6   RPS-SSMADFRKFFAKAKHIVIISGAGVSAESGVPTFRGAGGYWR-KWQAQDLATPLAFA 63

Query: 166 RARRRYWARSYAGWRRFMAAQPNPAHFALASLE----KAGRIDCMITQNVDRLHHRAGS- 220
               R W   +       + +PN  H A+A  E    K GR   +ITQN+D LH +AG+ 
Sbjct: 64  HNPSRVWEFYHYRREVMGSKEPNAGHRAIAECETRLGKQGRRVVVITQNIDELHRKAGTK 123

Query: 221 NPLELHGTVYTVVCLDCGFSFCRDLFQDQVKALNPKWAEAIESLDYGSPGSDRSFGMKQR 280
           N LE+HG+++   C  CG               +P                      K  
Sbjct: 124 NLLEIHGSLFKTRCTSCGVVAEN--------YKSPICPA---------------LSGKGA 160

Query: 281 PDGDIEIDEKFWEEDFHIPTCQK--CNGVLKPDV 312
           P+   +           +P C++  C G+L+P V
Sbjct: 161 PEPGTQDAS---IPVEKLPRCEEAGCGGLLRPHV 191
>1yc5_A NAD-dependent deacetylase; SIR2, sirtuin, SIR2TM, SIRT1, nicotinamide, hydrolase; HET: ALY; 1.40A {Thermotoga maritima} SCOP: c.31.1.5 PDB: 2h2d_A* 2h2f_A 2h2g_A* 2h2h_A* 2h2i_A* 2h4f_A* 2h4j_A* 3d4b_A* 3d81_A* 3pdh_A* 2h4h_A* 3jr3_A* 2h59_A* Length = 246 Back     alignment and structure
>2hjh_A NAD-dependent histone deacetylase SIR2; protein, sirtuin, acetyl-ADP-ribose, nicotinamide, hydrolase; HET: XYQ; 1.85A {Saccharomyces cerevisiae} Length = 354 Back     alignment and structure
>3u31_A SIR2A, transcriptional regulatory protein SIR2 homologue; Zn-binding domain, rossmann fold domain; HET: MYK NAD; 2.20A {Plasmodium falciparum} PDB: 3u3d_A* 3jwp_A* Length = 290 Back     alignment and structure
>1ma3_A SIR2-AF2, transcriptional regulatory protein, SIR2 family; enzyme-substrate complex, protein binding, transcription; HET: ALY MES; 2.00A {Archaeoglobus fulgidus} SCOP: c.31.1.5 PDB: 1s7g_A* 1yc2_A* Length = 253 Back     alignment and structure
>3k35_A NAD-dependent deacetylase sirtuin-6; rossmann fold, Zn-binding domain, structural genomics, struc genomics consortium, SGC, ADP-ribosylation; HET: APR; 2.00A {Homo sapiens} Length = 318 Back     alignment and structure
>3pki_A NAD-dependent deacetylase sirtuin-6; ADP ribose, structural genomics, structural genomics consortium, SGC, hydrolase; HET: AR6; 2.04A {Homo sapiens} PDB: 3pkj_A* Length = 355 Back     alignment and structure
>1m2k_A Silent information regulator 2; protein-ligand complex, gene regulation; HET: APR; 1.47A {Archaeoglobus fulgidus} SCOP: c.31.1.5 PDB: 1m2g_A* 1m2h_A* 1m2j_A* 1m2n_A* 1ici_A* Length = 249 Back     alignment and structure
>1q1a_A HST2 protein; ternary complex, histone deacetylase, 2'-O-ADP ribose,, gene regulation; HET: ALY OAD; 1.50A {Saccharomyces cerevisiae} SCOP: c.31.1.5 PDB: 1szd_A* 1szc_A* 2od7_A* 2od9_A* 2qqf_A* 2qqg_A* 1q17_A* 2od2_A* Length = 289 Back     alignment and structure
>3glr_A NAD-dependent deacetylase sirtuin-3, mitochondria; NAD dependent deacetylase, sirtuin, substrate peptide comple hydrolase, metal-binding; HET: ALY; 1.80A {Homo sapiens} PDB: 3gls_A 3glt_A* 3glu_A Length = 285 Back     alignment and structure
>1s5p_A NAD-dependent deacetylase; protein deacetylase, SIR2 homologue, hydrolase; HET: ALY; 1.96A {Escherichia coli} SCOP: c.31.1.5 Length = 235 Back     alignment and structure
>1q14_A HST2 protein; histone deacetylase, hydrolase; 2.50A {Saccharomyces cerevisiae} SCOP: c.31.1.5 Length = 361 Back     alignment and structure
>1j8f_A SIRT2, sirtuin 2, isoform 1, silencing INFO; gene regulation, transferase; 1.70A {Homo sapiens} SCOP: c.31.1.5 Length = 323 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query338
1yc5_A246 NAD-dependent deacetylase; SIR2, sirtuin, SIR2TM, 100.0
1ma3_A253 SIR2-AF2, transcriptional regulatory protein, SIR2 100.0
1m2k_A249 Silent information regulator 2; protein-ligand com 100.0
3riy_A273 NAD-dependent deacetylase sirtuin-5; desuccinylase 100.0
3u31_A290 SIR2A, transcriptional regulatory protein SIR2 hom 100.0
1q1a_A289 HST2 protein; ternary complex, histone deacetylase 100.0
3glr_A285 NAD-dependent deacetylase sirtuin-3, mitochondria; 100.0
1q14_A 361 HST2 protein; histone deacetylase, hydrolase; 2.50 100.0
1j8f_A323 SIRT2, sirtuin 2, isoform 1, silencing INFO; gene 100.0
2hjh_A354 NAD-dependent histone deacetylase SIR2; protein, s 100.0
1s5p_A235 NAD-dependent deacetylase; protein deacetylase, SI 100.0
4iao_A492 NAD-dependent histone deacetylase SIR2; protein co 100.0
3k35_A 318 NAD-dependent deacetylase sirtuin-6; rossmann fold 100.0
3pki_A 355 NAD-dependent deacetylase sirtuin-6; ADP ribose, s 100.0
2k5c_A95 Uncharacterized protein PF0385; structural genomic 82.79
2lcq_A165 Putative toxin VAPC6; PIN domain, Zn ribbon domain 81.08
>1yc5_A NAD-dependent deacetylase; SIR2, sirtuin, SIR2TM, SIRT1, nicotinamide, hydrolase; HET: ALY; 1.40A {Thermotoga maritima} SCOP: c.31.1.5 PDB: 2h2d_A* 2h2f_A 2h2g_A* 2h2h_A* 2h2i_A* 2h4f_A* 2h4j_A* 3d4b_A* 3d81_A* 3pdh_A* 2h4h_A* 3jr3_A* 2h59_A* Back     alignment and structure
Probab=100.00  E-value=1e-48  Score=365.32  Aligned_cols=178  Identities=31%  Similarity=0.593  Sum_probs=141.8

Q ss_pred             HHHHHHHHhcCCcEEEEECCcccccCCCCCccCCCCCCCCCCC--CCCHHHHhhchHHHHHHHHHHHHHHHhhhcCCCCH
Q 019598          112 INQLYQFFDNSAKLIVLTGAGISTECGIPDYRSPNGAYSSGFK--PITHQQFVRSSRARRRYWARSYAGWRRFMAAQPNP  189 (338)
Q Consensus       112 i~~L~~~I~~Ak~IVVlTGAGISaaSGIPdFR~~~Gly~~~~~--~~~~~~f~~~~~~~~~~wa~~~~~~~~~~~a~Pn~  189 (338)
                      +++|+++|++|++|||+||||||++|||||||+.+|+|. .|+  .++.+.|..++.   .+|+++...+..+.+++||.
T Consensus         3 i~~l~~~l~~a~~ivv~tGAGiS~~SGIpdfR~~~Glw~-~~~~~~~~~~~f~~~p~---~~~~~~~~~~~~~~~~~Pn~   78 (246)
T 1yc5_A            3 MKEFLDLLNESRLTVTLTGAGISTPSGIPDFRGPNGIYK-KYSQNVFDIDFFYSHPE---EFYRFAKEGIFPMLQAKPNL   78 (246)
T ss_dssp             CHHHHHHHHHCSSEEEEECGGGTGGGTCCCC------------CCTTBHHHHHHCHH---HHHHHHHHHTGGGGGCCCCH
T ss_pred             HHHHHHHHHhCCCEEEEECceeehhhCCCCccCCCcccc-cCCCceecHHHHhhCHH---HHHHHHHHHHHHhccCCCCH
Confidence            578999999999999999999999999999999999997 464  467777877654   55554444445567899999


Q ss_pred             HHHHHHHHHHcCCcceeeecccchhHhhhCC-CeEEeecccCceecCCCCcccchhhHHHHHHhhChhhHHHHhhhcCCC
Q 019598          190 AHFALASLEKAGRIDCMITQNVDRLHHRAGS-NPLELHGTVYTVVCLDCGFSFCRDLFQDQVKALNPKWAEAIESLDYGS  268 (338)
Q Consensus       190 ~H~aLa~Le~~gkl~~ViTQNID~Lh~rAG~-kviELHGsl~~~qC~~C~~~~~r~~~~~~l~~~np~~~~~~~~~~~~~  268 (338)
                      +|++|++|+++|++++||||||||||++||+ +|+||||++..++|+.|++.|+.+.+...+                  
T Consensus        79 ~H~~La~L~~~g~~~~viTQNvD~Lh~~AG~~~v~elHG~~~~~~C~~C~~~~~~~~~~~~~------------------  140 (246)
T 1yc5_A           79 AHVLLAKLEEKGLIEAVITQNIDRLHQRAGSKKVIELHGNVEEYYCVRCEKKYTVEDVIKKL------------------  140 (246)
T ss_dssp             HHHHHHHHHHTTSCSEEEECCCSCHHHHTTCSCEEETTEEEEEEEETTTCCEEEHHHHHHHT------------------
T ss_pred             HHHHHHHHHhcCCCceEEeccccchHhHcCCCcEEEecCccceeEcCCCCCCCcHHHHHHHh------------------
Confidence            9999999999999999999999999999999 799999999999999999987665432100                  


Q ss_pred             CCCCCCcCcccCCCCCcccccccccccCCCCCCCCCCCeeccceeecCCCCChhhHHHHhhccccCCC
Q 019598          269 PGSDRSFGMKQRPDGDIEIDEKFWEEDFHIPTCQKCNGVLKPDVSTSLSLIEVNSISIFFTLVPADDY  336 (338)
Q Consensus       269 ~~~~~~~~~~~~pdgd~~i~~~~~~~~~~iP~Cp~CgG~LrP~VV~FGE~l~~~~~~~~~~~~~~~~~  336 (338)
                                         +      ...+|+||.|||.|||+||||||++|.+.++++.+.+++.|+
T Consensus       141 -------------------~------~~~~p~C~~Cgg~lrP~vv~FgE~lp~~~~~~a~~~~~~adl  183 (246)
T 1yc5_A          141 -------------------E------SSDVPLCDDCNSLIRPNIVFFGENLPQDALREAIGLSSRASL  183 (246)
T ss_dssp             -------------------T------TCSSCBCTTTCCBEEEEECCBTSBCCHHHHHHHHHHHHHCSE
T ss_pred             -------------------c------cCCCCCCCCCCCccCcceEECCCCCCHHHHHHHHHHHhcCCE
Confidence                               0      113799999999999999999999999999999988887764
>1ma3_A SIR2-AF2, transcriptional regulatory protein, SIR2 family; enzyme-substrate complex, protein binding, transcription; HET: ALY MES; 2.00A {Archaeoglobus fulgidus} SCOP: c.31.1.5 PDB: 1s7g_A* 1yc2_A* Back     alignment and structure
>1m2k_A Silent information regulator 2; protein-ligand complex, gene regulation; HET: APR; 1.47A {Archaeoglobus fulgidus} SCOP: c.31.1.5 PDB: 1m2g_A* 1m2h_A* 1m2j_A* 1m2n_A* 1ici_A* Back     alignment and structure
>3riy_A NAD-dependent deacetylase sirtuin-5; desuccinylase, demalonylase, posttranslational modification, binding domain, rossmann fold domain; HET: SLL NAD; 1.55A {Homo sapiens} SCOP: c.31.1.5 PDB: 3rig_A* 4f4u_A* 4f56_A* 4hda_A* 2b4y_A* 2nyr_A* 4g1c_A* Back     alignment and structure
>3u31_A SIR2A, transcriptional regulatory protein SIR2 homologue; Zn-binding domain, rossmann fold domain; HET: MYK NAD; 2.20A {Plasmodium falciparum} PDB: 3u3d_A* 3jwp_A* Back     alignment and structure
>1q1a_A HST2 protein; ternary complex, histone deacetylase, 2'-O-ADP ribose,, gene regulation; HET: ALY OAD; 1.50A {Saccharomyces cerevisiae} SCOP: c.31.1.5 PDB: 1szd_A* 1szc_A* 2od7_A* 2od9_A* 2qqf_A* 2qqg_A* 1q17_A* 2od2_A* Back     alignment and structure
>3glr_A NAD-dependent deacetylase sirtuin-3, mitochondria; NAD dependent deacetylase, sirtuin, substrate peptide comple hydrolase, metal-binding; HET: ALY; 1.80A {Homo sapiens} PDB: 3gls_A 3glt_A* 3glu_A 4hd8_A* 4fvt_A* Back     alignment and structure
>1q14_A HST2 protein; histone deacetylase, hydrolase; 2.50A {Saccharomyces cerevisiae} SCOP: c.31.1.5 Back     alignment and structure
>1j8f_A SIRT2, sirtuin 2, isoform 1, silencing INFO; gene regulation, transferase; 1.70A {Homo sapiens} SCOP: c.31.1.5 Back     alignment and structure
>2hjh_A NAD-dependent histone deacetylase SIR2; protein, sirtuin, acetyl-ADP-ribose, nicotinamide, hydrolase; HET: XYQ; 1.85A {Saccharomyces cerevisiae} Back     alignment and structure
>1s5p_A NAD-dependent deacetylase; protein deacetylase, SIR2 homologue, hydrolase; HET: ALY; 1.96A {Escherichia coli} SCOP: c.31.1.5 Back     alignment and structure
>4iao_A NAD-dependent histone deacetylase SIR2; protein complex, deacetylase, nucleus, hydrolase-trans complex; HET: APR; 2.90A {Saccharomyces cerevisiae} Back     alignment and structure
>3k35_A NAD-dependent deacetylase sirtuin-6; rossmann fold, Zn-binding domain, structural genomics, struc genomics consortium, SGC, ADP-ribosylation; HET: APR; 2.00A {Homo sapiens} Back     alignment and structure
>3pki_A NAD-dependent deacetylase sirtuin-6; ADP ribose, structural genomics, structural genomics consortium, SGC, hydrolase; HET: AR6; 2.04A {Homo sapiens} PDB: 3pkj_A* Back     alignment and structure
>2k5c_A Uncharacterized protein PF0385; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Pyrococcus furiosus} Back     alignment and structure
>2lcq_A Putative toxin VAPC6; PIN domain, Zn ribbon domain, ribosome biogenesis, metal BIN protein; NMR {Pyrococcus horikoshii} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 338
d2b4ya1267 c.31.1.5 (A:36-302) NAD-dependent deacetylase sirt 6e-39
d1ma3a_252 c.31.1.5 (A:) AF0112, Sir2 homolog (Sir2-AF2) {Arc 7e-32
d1m2ka_249 c.31.1.5 (A:) AF1676, Sir2 homolog (Sir2-AF1?) {Ar 1e-28
d1yc5a1245 c.31.1.5 (A:1-245) NAD-dependent deacetylase NpdA 2e-28
d1s5pa_235 c.31.1.5 (A:) NAD-dependent deacetylase CobB {Esch 1e-27
d1j8fa_323 c.31.1.5 (A:) Sirt2 histone deacetylase {Human (Ho 1e-26
d1q1aa_289 c.31.1.5 (A:) Hst2 {Baker's yeast (Saccharomyces c 1e-24
>d2b4ya1 c.31.1.5 (A:36-302) NAD-dependent deacetylase sirtuin-5 {Human (Homo sapiens) [TaxId: 9606]} Length = 267 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: DHS-like NAD/FAD-binding domain
superfamily: DHS-like NAD/FAD-binding domain
family: Sir2 family of transcriptional regulators
domain: NAD-dependent deacetylase sirtuin-5
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  136 bits (344), Expect = 6e-39
 Identities = 50/211 (23%), Positives = 84/211 (39%), Gaps = 31/211 (14%)

Query: 107 PSIEDINQLYQFFDNSAKLIVLTGAGISTECGIPDYRSPNGAYSSGFKPITHQQFVRSSR 166
           PS   +    +FF  +  +++++GAG+S E G+P +R   G +   ++       +  + 
Sbjct: 1   PS-SSMADFRKFFAKAKHIVIISGAGVSAESGVPTFRGAGGYW-RKWQAQDLATPLAFAH 58

Query: 167 ARRRYWARSYAGWRRFMAAQPNPAHFALASLEK----AGRIDCMITQNVDRLHHRAGS-N 221
              R W   +       + +PN  H A+A  E      GR   +ITQN+D LH +AG+ N
Sbjct: 59  NPSRVWEFYHYRREVMGSKEPNAGHRAIAECETRLGKQGRRVVVITQNIDELHRKAGTKN 118

Query: 222 PLELHGTVYTVVCLDCGFSFCRDLFQDQVKALNPKWAEAIESLDYGSPGSDRSFGMKQRP 281
            LE+HG+++   C  CG              + P  +                   K  P
Sbjct: 119 LLEIHGSLFKTRCTSCGVVAENYKSP-----ICPALSG------------------KGAP 155

Query: 282 DGDIEIDEKFWEEDFHIPTCQKCNGVLKPDV 312
           +   + D     E         C G+L+P V
Sbjct: 156 EPGTQ-DASIPVEKLPRCEEAGCGGLLRPHV 185
>d1ma3a_ c.31.1.5 (A:) AF0112, Sir2 homolog (Sir2-AF2) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 252 Back     information, alignment and structure
>d1m2ka_ c.31.1.5 (A:) AF1676, Sir2 homolog (Sir2-AF1?) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 249 Back     information, alignment and structure
>d1yc5a1 c.31.1.5 (A:1-245) NAD-dependent deacetylase NpdA {Thermotoga maritima [TaxId: 2336]} Length = 245 Back     information, alignment and structure
>d1s5pa_ c.31.1.5 (A:) NAD-dependent deacetylase CobB {Escherichia coli [TaxId: 562]} Length = 235 Back     information, alignment and structure
>d1j8fa_ c.31.1.5 (A:) Sirt2 histone deacetylase {Human (Homo sapiens) [TaxId: 9606]} Length = 323 Back     information, alignment and structure
>d1q1aa_ c.31.1.5 (A:) Hst2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 289 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query338
d1yc5a1245 NAD-dependent deacetylase NpdA {Thermotoga maritim 100.0
d1m2ka_249 AF1676, Sir2 homolog (Sir2-AF1?) {Archaeon Archaeo 100.0
d2b4ya1267 NAD-dependent deacetylase sirtuin-5 {Human (Homo s 100.0
d1ma3a_252 AF0112, Sir2 homolog (Sir2-AF2) {Archaeon Archaeog 100.0
d1q1aa_289 Hst2 {Baker's yeast (Saccharomyces cerevisiae) [Ta 100.0
d1j8fa_323 Sirt2 histone deacetylase {Human (Homo sapiens) [T 100.0
d1s5pa_235 NAD-dependent deacetylase CobB {Escherichia coli [ 100.0
d1ybha1179 Acetohydroxyacid synthase catalytic subunit {Thale 88.96
d2djia1177 Pyruvate oxidase {Aerococcus viridans [TaxId: 1377 85.88
d2ez9a1183 Pyruvate oxidase {Lactobacillus plantarum [TaxId: 85.15
d1s24a_56 Two-iron rubredoxin {Pseudomonas oleovorans [TaxId 83.24
>d1yc5a1 c.31.1.5 (A:1-245) NAD-dependent deacetylase NpdA {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: DHS-like NAD/FAD-binding domain
superfamily: DHS-like NAD/FAD-binding domain
family: Sir2 family of transcriptional regulators
domain: NAD-dependent deacetylase NpdA
species: Thermotoga maritima [TaxId: 2336]

Probab=100.00  E-value=2.2e-48  Score=360.17  Aligned_cols=179  Identities=32%  Similarity=0.595  Sum_probs=145.6

Q ss_pred             HHHHHHHHHhcCCcEEEEECCcccccCCCCCccCCCCCCCCCCCC--CCHHHHhhchHHHHHHHHHHHHHHHhhhcCCCC
Q 019598          111 DINQLYQFFDNSAKLIVLTGAGISTECGIPDYRSPNGAYSSGFKP--ITHQQFVRSSRARRRYWARSYAGWRRFMAAQPN  188 (338)
Q Consensus       111 ~i~~L~~~I~~Ak~IVVlTGAGISaaSGIPdFR~~~Gly~~~~~~--~~~~~f~~~~~~~~~~wa~~~~~~~~~~~a~Pn  188 (338)
                      ++++|+++|++|++|||+|||||||+||||||||++|+|.+ |+.  ++.+.|..+   ++.||+++...+..+.+++||
T Consensus         2 k~~~l~~~l~~~~~ivvltGAGiS~~SGIPdfR~~~G~w~~-~~~~~~~~~~f~~~---p~~~~~~~~~~~~~~~~~~P~   77 (245)
T d1yc5a1           2 KMKEFLDLLNESRLTVTLTGAGISTPSGIPDFRGPNGIYKK-YSQNVFDIDFFYSH---PEEFYRFAKEGIFPMLQAKPN   77 (245)
T ss_dssp             CCHHHHHHHHHCSSEEEEECGGGTGGGTCCCC------------CCTTBHHHHHHC---HHHHHHHHHHHTGGGGGCCCC
T ss_pred             cHHHHHHHHHhCCCEEEEECchhccccCCCCccCcCCCccC-CCcccccHHHHHhh---hHHHHHHHHhhhhhhhhhhhh
Confidence            36789999999999999999999999999999999999974 432  466777766   467887766666667899999


Q ss_pred             HHHHHHHHHHHcCCcceeeecccchhHhhhCC-CeEEeecccCceecCCCCcccchhhHHHHHHhhChhhHHHHhhhcCC
Q 019598          189 PAHFALASLEKAGRIDCMITQNVDRLHHRAGS-NPLELHGTVYTVVCLDCGFSFCRDLFQDQVKALNPKWAEAIESLDYG  267 (338)
Q Consensus       189 ~~H~aLa~Le~~gkl~~ViTQNID~Lh~rAG~-kviELHGsl~~~qC~~C~~~~~r~~~~~~l~~~np~~~~~~~~~~~~  267 (338)
                      .+|++|++|+++|++.+||||||||||++||+ +|+|+||++..++|..|++.++.+.+....                 
T Consensus        78 ~~H~~L~~l~~~~~~~~viTQNiDgLh~~AG~~~v~elHG~l~~~~C~~c~~~~~~~~~~~~~-----------------  140 (245)
T d1yc5a1          78 LAHVLLAKLEEKGLIEAVITQNIDRLHQRAGSKKVIELHGNVEEYYCVRCEKKYTVEDVIKKL-----------------  140 (245)
T ss_dssp             HHHHHHHHHHHTTSCSEEEECCCSCHHHHTTCSCEEETTEEEEEEEETTTCCEEEHHHHHHHT-----------------
T ss_pred             hhhHHHHHHHhcCCCceEeecccchHHHHcCCccccccccccceeeecccCCCccHHHHhhhh-----------------
Confidence            99999999999999999999999999999999 799999999999999999998766442211                 


Q ss_pred             CCCCCCCcCcccCCCCCcccccccccccCCCCCCCCCCCeeccceeecCCCCChhhHHHHhhccccCCC
Q 019598          268 SPGSDRSFGMKQRPDGDIEIDEKFWEEDFHIPTCQKCNGVLKPDVSTSLSLIEVNSISIFFTLVPADDY  336 (338)
Q Consensus       268 ~~~~~~~~~~~~~pdgd~~i~~~~~~~~~~iP~Cp~CgG~LrP~VV~FGE~l~~~~~~~~~~~~~~~~~  336 (338)
                                                .....|.|+.|||.|||+||||||++|.+.++.+.+..++.|+
T Consensus       141 --------------------------~~~~~p~c~~Cgg~lrP~Vv~FgE~lp~~~~~~a~~~~~~~Dl  183 (245)
T d1yc5a1         141 --------------------------ESSDVPLCDDCNSLIRPNIVFFGENLPQDALREAIGLSSRASL  183 (245)
T ss_dssp             --------------------------TTCSSCBCTTTCCBEEEEECCBTSBCCHHHHHHHHHHHHHCSE
T ss_pred             --------------------------hcccCCCccccCCcccCcEEEccccCCHHHHHHHHHHhhcCCE
Confidence                                      0123799999999999999999999999999999988877774
>d1m2ka_ c.31.1.5 (A:) AF1676, Sir2 homolog (Sir2-AF1?) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d2b4ya1 c.31.1.5 (A:36-302) NAD-dependent deacetylase sirtuin-5 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ma3a_ c.31.1.5 (A:) AF0112, Sir2 homolog (Sir2-AF2) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1q1aa_ c.31.1.5 (A:) Hst2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1j8fa_ c.31.1.5 (A:) Sirt2 histone deacetylase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1s5pa_ c.31.1.5 (A:) NAD-dependent deacetylase CobB {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1ybha1 c.31.1.3 (A:281-459) Acetohydroxyacid synthase catalytic subunit {Thale cress (Arabidopsis thaliana), chloroplast [TaxId: 3702]} Back     information, alignment and structure
>d2djia1 c.31.1.3 (A:187-363) Pyruvate oxidase {Aerococcus viridans [TaxId: 1377]} Back     information, alignment and structure
>d2ez9a1 c.31.1.3 (A:183-365) Pyruvate oxidase {Lactobacillus plantarum [TaxId: 1590]} Back     information, alignment and structure
>d1s24a_ g.41.5.1 (A:) Two-iron rubredoxin {Pseudomonas oleovorans [TaxId: 301]} Back     information, alignment and structure