Citrus Sinensis ID: 019623

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------34
Protein Sequence
MKNNINTKLILLRPSTIHKPTTTTTTITTHRFYLLFFLTFFTLAFTLTFFTTAINPASSVASTAKSLPSSSSSSSSIITAALLHYTLTSNSTMTSAELTAVADALSRCSPSCNFLVFGLTHETLLWKSLNFQGHTIFVDESEFLVQSFEKNHPDFEIYDVQYTTKVEEMNPTLHAVRKQFKDDCRPMQNLLFSDCKLAINDMPNHVYDMDWDVVLVDGPSGYFPRAPGRMAPIFTASVLARSKKAGRKKTHVFVHDFNREVERVCSEEFLCEENLVEVVDKLAHFVVEPMAPIEGNEEQSFKFCKSSSPSSSLSSPSSSDDDDYHSLIEDGHHGDDDA
Secondary Structure (PSIPRED)
ccccccccEEEEccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccHHHHHHHHHHHccccccccHHHHHHHHHHHHHccccccEEEEcccHHHHHHHHHcccccEEEEcccHHHHHHHHHHccccEEEEEEEEcccccHHHHHHHHHHccccccccccccccccccccccccccccccccccEEEEccccccccccccccHHHHcHHHHHHHHcccccccEEEEEcccHHHHHHHHHHHccccccHHHccccccEEEccccccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccEEEEEEcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccHHHHHHHHHHHHcccccccHHHHHHHHHHHHHccccccEEEEcccccHHHHHHHcccccEEEEcccHHHHHHHHHHccccEEEEEEEcccHHcHHHHHHHHHHHcccccccccccccccccHcccccccHHEEcccEEEEEEccccccccccccHHHHHHHHHHHHHccccccccEEEEEcccHHHHHHHHHHHHcHHHHHcccccEEEEEEcccccccccccccccccccccccccccccccccccccEEEEEccccccccc
Coil and Loop (DISEMBL)
mknnintklillrpstihkpttttttitTHRFYLLFFLTFFTLAFTLTFFttainpassvastakslpsssssssSIITAALLHYTLTSNSTMTSAELTAVADALsrcspscnflVFGLTHETLLWKslnfqghtifvdeseFLVQSFeknhpdfeiyDVQYTTKVEEMNPTLHAVRKQFKddcrpmqnllFSDCKLaindmpnhvydmdwdvvlvdgpsgyfprapgrmapifTASVLARSKkagrkkthVFVHDFNREvervcseeflceENLVEVVDKLAHFvvepmapiegneeqsfkfckssspssslsspsssddddyhsliedghhgddda
Flexible Loop (DISEMBL)
mknnintklillrpstihkptttttTITTHRFYLLFFLTFFTLAFTLTFFTTAINPASSVASTAKSLPSSSSSSSSIITAALLHYTLTSNSTMTSAELTAVADALSRCSPSCNFLVFGLTHETLLWKSLNFQGHTIFVDESEFLVQSFEKNHPDFEIYDVQYTTKVEEMNPTLHAVRKQFKDDCRPMQNLLFSDCKLAINDMPNHVYDMDWDVVLVDGPSGYFPRAPGRMAPIFTASVLARSKKAGRKKTHVFVHDFNREVERVCSEEFLCEENLVEVVDKLAHFVVEPMAPIEGNEEQSFKFCKSSspssslsspsssdddDYHSLIEDGHHGDDDA
Low Complexity Region (SEG)
MKNNINTKLILLRPSTIHKPttttttitthrfyllffltfftlaftltffttAINPAssvastakslpssssssssiitaalLHYTLTSNSTMTSAELTAVADALSRCSPSCNFLVFGLTHETLLWKSLNFQGHTIFVDESEFLVQSFEKNHPDFEIYDVQYTTKVEEMNPTLHAVRKQFKDDCRPMQNLLFSDCKLAINDMPNHVYDMDWDVVLVDGPSGYFPRAPGRMAPIFTASVLARSKKAGRKKTHVFVHDFNREVERVCSEEFLCEENLVEVVDKLAHFVVEPMAPIEGNEEQSFKFCKssspssslsspsssddddYHSLIEDGHHGDDDA
Disordered region (IsUnstruct)
*******************************FYLLFFLTFFTLAFTLTFFTTAIN*********************IITAALLHYTLTSNSTMTSAELTAVADALSRCSPSCNFLVFGLTHETLLWKSLNFQGHTIFVDESEFLVQSFEKNHPDFEIYDVQYTTKVEEMNPTLHAVRKQFKDDCRPMQNLLFSDCKLAINDMPNHVYDMDWDVVLVDGPSGYFPRAPGRMAPIFTASVLARSKKAGRKKTHVFVHDFNREVERVCSEEFLCEENLVEVVDKLAHFVVEPMA***********************************************
Disordered Region (DISOPRED)
******T****LR*****************RFYLLFFLTFFTLAFTLTFFT***************************TAALLHYT***********LTAVADALSRCSPSCNFLVFGLTHETLLWKSLNFQGHTIFVDESEFLVQSFEKNHPDFEIYDVQYTTKVEEMNPTLHAVRKQFKDDCRPMQNLLFSDCKLAINDMPNHVYDMDWDVVLVDGPSGYFPRAPGRMAPIFTASVLA******RKKTHVFVHDFNREVERVCSEEFLCEENLVEVVDKLAHFVVEP*************************************************
Disordered Region (DISEMBL)
MKNNINTKLILLRPSTIHKPTTTTTTITTHRFYLLFFLTFFTLAFTLTFFTTAINPAS*****************SIITAALLHYTLTSNSTMTSAELTAVADALSRCSPSCNFLVFGLTHETLLWKSLNFQGHTIFVDESEFLVQSFEKNHPDFEIYDVQYTTKVEEMNPTLHAVRKQFKDDCRPMQNLLFSDCKLAINDMPNHVYDMDWDVVLVDGPSGYFPRAPGRMAPIFTASVLA*********THVFVHDFNREVERVCSEEFLCEENLVEVVDKLAHFVVEPMAPIEGNE*************************DYHSLIEDGHHGDDDA
Disordered Region (DISPRO)
****INTKLILLRPSTIHKPTTTTTTITTHRFYLLFFLTFFTLAFTLTFFTTA*****************SSSSSSIITAALLHYTLTSNSTMTSAELTAVADALSRCSPSCNFLVFGLTHETLLWKSLNFQGHTIFVDESEFLVQSFEKNHPDFEIYDVQYTTKVEEMNPTLHAVRKQFKDDCRPMQNLLFSDCKLAINDMPNHVYDMDWDVVLVDGPSGYFPRAPGRMAPIFTASVLARSKKAGRKKTHVFVHDFNREVERVCSEEFLCEENLVEVVDKLAHFVVEPM********************************DYHSL***********
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MKNNINTKLILLRPSTIHKPTTTTTTITTHRFYLLFFLTFFTLAFTLTFFTTAINPASSVASTAKSLPSSSSSSSSIITAALLHYTLTSNSTMTSAELTAVADALSRCSPSCNFLVFGLTHETLLWKSLNFQGHTIFVDESEFLVQSFEKNHPDFEIYDVQYTTKVEEMNPTLHAVRKQFKDDCRPMQNLLFSDCKLAINDMPNHVYDMDWDVVLVDGPSGYFPRAPGRMAPIFTASVLARSKKAGRKKTHVFVHDFNREVERVCSEEFLCEENLVEVVDKLAHFVVEPMAPIEGNEEQSFKFCKSSSPSSSLSSPSSSDDDDYHSLIEDGHHGDDDA
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	338	2.2.26 [Sep-21-2011]
Q9FH92	317	Protein IRX15-LIKE OS=Ara	yes	no	0.896	0.955	0.509	2e-90
Q9SNE5	322	Protein IRREGULAR XYLEM 1	no	no	0.881	0.925	0.503	2e-85
Q6NMK1	282	Glucuronoxylan 4-O-methyl	no	no	0.754	0.904	0.338	4e-42
Q9T0F7	290	Glucuronoxylan 4-O-methyl	no	no	0.733	0.855	0.378	4e-40
Q9LQ32	297	Glucuronoxylan 4-O-methyl	no	no	0.621	0.707	0.396	2e-39

>sp|Q9FH92|IX15L_ARATH Protein IRX15-LIKE OS=Arabidopsis thaliana GN=IRX15-L PE=2 SV=1

 Score =  332 bits (852), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 166/326 (50%), Positives = 223/326 (68%), Gaps = 23/326 (7%)

Query: 3   NNINTKLILLRPSTIHKPTTTTTTITTHRFYLLFFLTFFTLAFTLTFFTT------AINP 56
            N NTKLIL+ P  I K T+T      +R +LL F++FFT+AF LT   T      + N 
Sbjct: 5   GNTNTKLILVHP-YIQKQTST------NRLWLLAFVSFFTIAFLLTLLYTTDSIISSKNN 57

Query: 57  ASSVASTAKSLPSSSSSSSSIITA--ALLHYTLTSNST--MTSAELTAVADALSRCSPSC 112
           +++V+S   S  ++++ S    TA  A+LHY   SN +  M+  E+ +++D L RCSP C
Sbjct: 58  SATVSSAVNSAVTTATISQLPTTAINAMLHYASRSNDSYHMSYGEMKSISDVLRRCSPPC 117

Query: 113 NFLVFGLTHETLLWKSLNFQGHTIFVDESEFLVQSFEKNHPDFEIYDVQYTTKVEEMNPT 172
           N LVFGLTHETLLWKSLN  G T+F++E+ +    FE+ HP+ E++DVQYTTK  E    
Sbjct: 118 NLLVFGLTHETLLWKSLNHNGRTVFIEENRYYAAYFEEIHPEIEVFDVQYTTKAREAREL 177

Query: 173 LHAVRKQFKDDCRPMQNLLFSDCKLAINDMPNHVYDMDWDVVLVDGPSGYFPRAPGRMAP 232
           + AV++  +++CRP+QNLLFSDCKL +ND+PNHVYD+DWDV+LVDGP G     PGRM+ 
Sbjct: 178 VSAVKEAARNECRPVQNLLFSDCKLGLNDLPNHVYDVDWDVILVDGPRGDGGDVPGRMSS 237

Query: 233 IFTASVLARSKKAGRKKTHVFVHDFNREVERVCSEEFLCEENLVEVVDKLAHFVVEPMAP 292
           IFTA+VLARSKK G  KTHVFVHD+ R+VER+C +EFLC ENLVE  D LAH+V+E M  
Sbjct: 238 IFTAAVLARSKKGGNPKTHVFVHDYYRDVERLCGDEFLCRENLVESNDLLAHYVLEKM-- 295

Query: 293 IEGNEEQSFKFCKSSSPSSSLSSPSS 318
               ++ S +FC+      S+SSPS+
Sbjct: 296 ----DKNSTQFCRGRKKKRSVSSPSA 317

Required for xylan biosynthesis, but not directly involved in catalyzing the addition of sugars to the growing polymer.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9SNE5|IRX15_ARATH Protein IRREGULAR XYLEM 15 OS=Arabidopsis thaliana GN=IRX15 PE=2 SV=1

 Score =  316 bits (809), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 166/330 (50%), Positives = 217/330 (65%), Gaps = 32/330 (9%)

Query: 1   MKN---NINTKLILLRPSTIHKPTTTTTTITTHRFYLLFFLTFFTLAFTLTFF------- 50
           MKN   N NTKLILL P  I K T+TT      R +LL F++FFT+ F LT         
Sbjct: 1   MKNGSGNTNTKLILLHP-YIQKQTSTT------RLWLLAFVSFFTIVFLLTLLYTRDTIP 53

Query: 51  --TTAINPASSVASTAKSLPSSSS--SSSSIITAA---LLHYTLTSNST--MTSAELTAV 101
              T++  A +   T  S PS+SS  S+S++ T+A   LLHY   SN +  M+  E+ ++
Sbjct: 54  SKNTSVAAAVAAVVTGGSTPSASSPISNSNLPTSAINALLHYASRSNDSFHMSYGEMKSI 113

Query: 102 ADALSRCSPSCNFLVFGLTHETLLWKSLNFQGHTIFVDESEFLVQSFEKNHPDFEIYDVQ 161
           +D L RC+P CN LVFGLTHETLLWKSLN  G T+F++E+ +    FE+ HP+ +++DVQ
Sbjct: 114 SDVLRRCAPPCNLLVFGLTHETLLWKSLNHNGRTVFIEENRYYAAYFEEIHPEIDVFDVQ 173

Query: 162 YTTKVEEMNPTLHAVRKQFKDDCRPMQNLLFSDCKLAINDMPNHVYDMDWDVVLVDGPSG 221
           YTTK  E    + A ++   ++CRP+QNLLFSDCKL +ND+PNHVYD+DWDV+ VDGP G
Sbjct: 174 YTTKAHEAGELVTAAKEAAGNECRPVQNLLFSDCKLGLNDLPNHVYDVDWDVIFVDGPRG 233

Query: 222 YFPRAPGRMAPIFTASVLARSKKAGRKKTHVFVHDFNREVERVCSEEFLCEENLVEVVDK 281
                PGRM+ IFTA+VLARSKK G  KTHVFVHD+ R+VER+C +EFLC ENLVE  D 
Sbjct: 234 DAHEGPGRMSSIFTAAVLARSKKGGTPKTHVFVHDYYRDVERLCGDEFLCRENLVESNDL 293

Query: 282 LAHFVVEPMAPIEGNEEQSFKFCKSSSPSS 311
           LAH+V++ M      ++ S KFC      S
Sbjct: 294 LAHYVLDKM------DKNSTKFCNGRKKRS 317

Required for xylan biosynthesis, but not directly involved in catalyzing the addition of sugars to the growing polymer.

Arabidopsis thaliana (taxid: 3702)

>sp|Q6NMK1|GXM1_ARATH Glucuronoxylan 4-O-methyltransferase 1 OS=Arabidopsis thaliana GN=GXM1 PE=1 SV=1

 Score =  172 bits (436), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 93/275 (33%), Positives = 154/275 (56%), Gaps = 20/275 (7%)

Query: 34  LLFFLTFFTLAFTLTFFTTAINPASSVASTAKSLPSSSSSSSSIITAALLHYT---LTSN 90
           +L F+   TL  +    T     ++  +     LP S       +  AL+HY+   +T  
Sbjct: 23  ILIFIVRSTLTSSQEHQTPQETRSTRCSGACNKLPRS-------LAQALIHYSTSVITPQ 75

Query: 91  STMTSAELTAVADALSRCSPSCNFLVFGLTHETLLWKSLNFQGHTIFVDESEFLVQSFEK 150
            T+   E+   +  L + SP CNFLVFGL H++L+W SLN+ G T+F++E E  ++  ++
Sbjct: 76  QTLK--EIAVSSRVLGKKSP-CNFLVFGLGHDSLMWSSLNYGGRTVFLEEDEAWIKQIKR 132

Query: 151 NHPDFEIYDVQYTTKVEEMNPTLHAVRKQFKDDCRPMQNLLFSDCKLAINDMPNHVYDMD 210
             P  E Y V Y +KV + +  +   +     +C  + +  +S C+LA+  +P  +Y+  
Sbjct: 133 RFPMLESYHVTYDSKVNQADNLIEVGK---GPECTAIGDPRYSMCQLALKGLPAEIYETG 189

Query: 211 WDVVLVDGPSGYFPRAPGRMAPIFTASVLARSKKAGRKKTHVFVHDFNREVERVCSEEFL 270
           WD+++VD P+GY+  APGRM  I+TA ++AR++K G  +T VFVHD NRE+E   S+ FL
Sbjct: 190 WDLIMVDAPTGYYDEAPGRMTAIYTAGMMARNRKQG-GETDVFVHDVNREIEDKFSKAFL 248

Query: 271 CEENLVEVVDKLAHFVVEPMAPIEGNEEQSFK-FC 304
           CE  + +   +L HF++      +G+E +S + FC
Sbjct: 249 CEGYMKKQEGRLRHFIIPSYR--DGSESESNRPFC 281

Methyltransferase catalyzing 4-O-methylation of glucuronic acid side chains on xylan.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 1

EC: 2

>sp|Q9T0F7|GXM2_ARATH Glucuronoxylan 4-O-methyltransferase 2 OS=Arabidopsis thaliana GN=GXM2 PE=1 SV=1

 Score =  165 bits (418), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 97/256 (37%), Positives = 141/256 (55%), Gaps = 8/256 (3%)

Query: 34  LLFFLTFFTLAFTLTFFTTAINPASSVASTAKSLPSSSSSSSSIITAALLHYTLTSNST- 92
           L+ F+ F   A   +  T  I       S   S P   +   + ++ AL+HY +TS  T 
Sbjct: 21  LVLFILFLKRASFSSNSTATIRDEYHQKSKCPSTPQQCTKLPTSLSDALVHY-VTSEITP 79

Query: 93  -MTSAELTAVADALSRCSPSCNFLVFGLTHETLLWKSLNFQGHTIFVDESEFLVQSFEKN 151
             T  E++     L + SP CNFLVFGL H++L+W SLN  G T+F++E E  +++  K 
Sbjct: 80  QQTFDEVSVSKRVLDKKSP-CNFLVFGLGHDSLMWASLNHGGRTLFLEEDEAWIETVTKK 138

Query: 152 HPDFEIYDVQYTTKVEEMNPTLHAVRKQFKDDCRPMQNLLFSDCKLAINDMPNHVYDMDW 211
            P+ E Y V Y TKV++ N  +   R +   DC+ + +   S C L++   P  VY+  W
Sbjct: 139 FPNLESYHVVYDTKVKDSNKLMELKRTE---DCKAVSDPRDSKCALSLKGFPADVYETQW 195

Query: 212 DVVLVDGPSGYFPRAPGRMAPIFTASVLARSKKAGRKKTHVFVHDFNREVERVCSEEFLC 271
           DV++VD P+GY   APGRM+ I+TA +LAR++  G  +T VFVHD NR VE   S  FLC
Sbjct: 196 DVIMVDAPTGYHDEAPGRMSAIYTAGLLARNRYDG-GETDVFVHDINRPVEDEFSVAFLC 254

Query: 272 EENLVEVVDKLAHFVV 287
              + E   +L HF +
Sbjct: 255 GGYMKEQQGRLRHFNI 270

Methyltransferase catalyzing 4-O-methylation of glucuronic acid side chains on xylan.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 1

EC: 2

>sp|Q9LQ32|GXM3_ARATH Glucuronoxylan 4-O-methyltransferase 3 OS=Arabidopsis thaliana GN=GXM3 PE=1 SV=1

 Score =  162 bits (411), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 90/227 (39%), Positives = 132/227 (58%), Gaps = 17/227 (7%)

Query: 78  ITAALLHYTLTSNST--MTSAELTAVADALSRCSPSCNFLVFGLTHETLLWKSLNFQGHT 135
           ++ AL+HY +TSN T   T  E++     L + SP CNFLVFGL H++L+W SLN  G T
Sbjct: 73  LSDALVHY-VTSNVTPQQTFDEVSVSKRVLDKKSP-CNFLVFGLGHDSLMWASLNHGGRT 130

Query: 136 IFVDESEFLVQSFEKNHPDFEIYDVQYTTKVEEMNPTLHAVRKQFKDDCRPMQNLLFSDC 195
           +F++E +  +    K  P+ E Y V Y TKV++ +  +   R +   +CR + +   S C
Sbjct: 131 LFIEEDQAWIAIVTKKFPNLESYHVVYDTKVKDSDKLMELGRSE---ECRSVSDPRNSKC 187

Query: 196 KLAINDMPNHVYDMDWDVVLVDGPSGYFPRAPGRMAPIFTASVLARSKKAGRKKTHVFVH 255
            LA+ D P   Y+  WD+++VD P+GY   APGRM+ I+TA +LAR+++ G  +T VFVH
Sbjct: 188 DLALKDFPADFYETKWDLIMVDAPTGYHEEAPGRMSAIYTAGLLARNREDG--ETDVFVH 245

Query: 256 DFNREVERVCSEEFLCEENLVEVVDKLAHFVV--------EPMAPIE 294
           D NR VE   S  FLC+  + E   +L HF +         P  P+E
Sbjct: 246 DVNRPVEDEFSATFLCKGYMREQNGRLRHFTIPSHRARAGRPFCPVE 292

Methyltransferase catalyzing 4-O-methylation of glucuronic acid side chains on xylan.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 1

EC: 2

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	338
255555359	322	conserved hypothetical protein [Ricinus	0.884	0.928	0.591	1e-100
147780817	342	hypothetical protein VITISV_041669 [Viti	0.869	0.859	0.581	2e-99
225428873	304	PREDICTED: uncharacterized protein LOC10	0.849	0.944	0.591	3e-99
224103635	302	predicted protein [Populus trichocarpa]	0.878	0.983	0.590	1e-94
224056152	301	predicted protein [Populus trichocarpa]	0.866	0.973	0.601	4e-92
15240242	317	uncharacterized protein [Arabidopsis tha	0.896	0.955	0.509	1e-88
225438797	310	PREDICTED: uncharacterized protein LOC10	0.866	0.945	0.538	4e-88
449438392	320	PREDICTED: uncharacterized protein LOC10	0.905	0.956	0.530	4e-87
297797657	316	nucleic acid binding protein [Arabidopsi	0.893	0.955	0.5	7e-86
21593034	322	unknown [Arabidopsis thaliana]	0.881	0.925	0.503	8e-84

>gi|255555359|ref|XP_002518716.1| conserved hypothetical protein [Ricinus communis] gi|223542097|gb|EEF43641.1| conserved hypothetical protein [Ricinus communis]

 Score =  370 bits (950), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 194/328 (59%), Positives = 236/328 (71%), Gaps = 29/328 (8%)

Query: 8   KLILLRPSTIHKPTTTTTTITTHRFYLLFFLTFFTLAFTLTFFTTAINPASSVASTAKSL 67
           KLILL PS+IHK      T + HRF+LLF +TFFTLAFTL  F++         +T  S 
Sbjct: 11  KLILLHPSSIHK------TPSHHRFWLLFIVTFFTLAFTLALFSST----IPTVTTTTSS 60

Query: 68  PSSSSSSSSIITAALLHYTLTSNST---MTSAELTAVADALSRCSPSCNFLVFGLTHETL 124
            +S++S    +T ALLHY  TSN+T   M+SAEL+ +A  L  CSP CNFLVFGLTHETL
Sbjct: 61  STSTTSLPLSVTTALLHYASTSNTTTPHMSSAELSTIASTLHHCSPPCNFLVFGLTHETL 120

Query: 125 LWKSLNFQGHTIFVDESEFLVQSFEKNHPDFEIYDVQYTTKVEEMNPTLHAVRKQFKDDC 184
           LWKSLNF G TIF+DESE+ V +FEK HP+ E YD+QYTTKV EMN  L   + Q KD+C
Sbjct: 121 LWKSLNFHGRTIFLDESEYYVSNFEKIHPEIEAYDIQYTTKVSEMNDLLSVAQAQVKDEC 180

Query: 185 RPMQNLLFSDCKLAINDMPNHVYDMDWDVVLVDGPSGYFPRAPGRMAPIFTASVLARSKK 244
           +P+QNLLFSDCKL INDMPNH+Y++ WDV+L+DGP GYF  APGRM+PIFTASV+ARSK+
Sbjct: 181 KPVQNLLFSDCKLGINDMPNHIYEVAWDVILIDGPRGYFAAAPGRMSPIFTASVMARSKR 240

Query: 245 AGRKKTHVFVHDFNREVERVCSEEFLCEENLVEVVDKLAHFVVEPMAPIEGNEEQSFKFC 304
            G K THVFVH+++REVER  S+EFLC+ENLVE VD L HFVVE M   EGN   SF+FC
Sbjct: 241 GGDKTTHVFVHEYDREVERTFSDEFLCDENLVETVDSLGHFVVEKM---EGN---SFEFC 294

Query: 305 KSSSPS----------SSLSSPSSSDDD 322
           ++S             +SLSS   +DDD
Sbjct: 295 ENSKSISSSPLSTSKIASLSSGDDADDD 322

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147780817|emb|CAN74915.1| hypothetical protein VITISV_041669 [Vitis vinifera]

 Score =  368 bits (944), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 185/318 (58%), Positives = 227/318 (71%), Gaps = 24/318 (7%)

Query: 1   MKNNINTKLILLRPSTIHKPTTTTTTITTHRFYLLFFLTFFTLAFTLTFFTTAINPASSV 60
           MK+N +TKLI+L PS IHK    +     HR +LLFF+ FFTLAF LT   TA+   ++ 
Sbjct: 1   MKSNGSTKLIVLHPS-IHKQGGAS-----HRLWLLFFVCFFTLAFVLTLINTAVPTPTTA 54

Query: 61  ASTAKS---LPSSSSSSSSIITAALLHYTLTSNST--MTSAELTAVADALSRCSPSCNFL 115
           AS A +   LP S+         ALLHY   SN T  MT+AE+ ++A  L RCS  CNFL
Sbjct: 55  ASAASAHFPLPHSA-------MEALLHYAAASNITGHMTAAEMASIAGVLRRCSSPCNFL 107

Query: 116 VFGLTHETLLWKSLNFQGHTIFVDESEFLVQSFEKNHPDFEIYDVQYTTKVEEMNPTLHA 175
           +FGLTHETLLWK+LN  G TIF+DESEF +  FE+ HPD E YDVQYTTKV EM+  + +
Sbjct: 108 IFGLTHETLLWKALNSNGRTIFLDESEFYIAKFEEKHPDIEAYDVQYTTKVSEMSELIRS 167

Query: 176 VRKQFKDDCRPMQNLLFSDCKLAINDMPNHVYDMDWDVVLVDGPSGYFPRAPGRMAPIFT 235
            ++Q +++CRP+QNLLFSDCKL IND+PNH+Y +DWDV+LVDGP GYFP APGRM+ IFT
Sbjct: 168 AKEQLRNECRPVQNLLFSDCKLGINDLPNHLYQVDWDVILVDGPRGYFPAAPGRMSAIFT 227

Query: 236 ASVLARSKKAGRKKTHVFVHDFNREVERVCSEEFLCEENLVEVVDKLAHFVVEPMAPIEG 295
           A VLARSKK G  KTHVFVHD NR+VER+CS EFLC+ENLVE  D L HFVVE M P   
Sbjct: 228 AGVLARSKKGGSAKTHVFVHDMNRDVERICSNEFLCKENLVETTDLLGHFVVETMKP--- 284

Query: 296 NEEQSFKFCKSSSPSSSL 313
               SF+FC++ + SS +
Sbjct: 285 ---NSFRFCRNPTKSSRV 299

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225428873|ref|XP_002285113.1| PREDICTED: uncharacterized protein LOC100267469 [Vitis vinifera]

 Score =  367 bits (943), Expect = 3e-99,   Method: Compositional matrix adjust.
 Identities = 184/311 (59%), Positives = 223/311 (71%), Gaps = 24/311 (7%)

Query: 1   MKNNINTKLILLRPSTIHKPTTTTTTITTHRFYLLFFLTFFTLAFTLTFFTTAINPASSV 60
           MK+N NTKLI+L PS IHK    +     HR +LLFF+ FFTLAF LT   TA+   ++ 
Sbjct: 1   MKSNGNTKLIVLHPS-IHKQGGAS-----HRLWLLFFVCFFTLAFVLTLINTAVPTPTTA 54

Query: 61  ASTAKS---LPSSSSSSSSIITAALLHYTLTSNST--MTSAELTAVADALSRCSPSCNFL 115
           AS A +   LP S+         ALLHY   SN T  MT+AE+ ++A  L RCS  CNFL
Sbjct: 55  ASAASAHFPLPHSA-------MEALLHYAAASNITGHMTAAEMASIAGVLRRCSSPCNFL 107

Query: 116 VFGLTHETLLWKSLNFQGHTIFVDESEFLVQSFEKNHPDFEIYDVQYTTKVEEMNPTLHA 175
           +FGLTHETLLWK+LN  G TIF+DESEF +  FE+ HPD E YDVQYTTKV EM+  + +
Sbjct: 108 IFGLTHETLLWKALNSNGRTIFLDESEFYIAKFEEKHPDIEAYDVQYTTKVSEMSELIRS 167

Query: 176 VRKQFKDDCRPMQNLLFSDCKLAINDMPNHVYDMDWDVVLVDGPSGYFPRAPGRMAPIFT 235
            ++Q +++CRP+QNLLFSDCKL IND+PNH+Y +DWDV+LVDGP GYFP APGRM+ IFT
Sbjct: 168 AKEQLRNECRPVQNLLFSDCKLGINDLPNHLYQVDWDVILVDGPRGYFPAAPGRMSAIFT 227

Query: 236 ASVLARSKKAGRKKTHVFVHDFNREVERVCSEEFLCEENLVEVVDKLAHFVVEPMAPIEG 295
           A VLARSKK G  KTHVFVHD NR+VER+CS EFLC+ENLVE  D L HFVVE M P   
Sbjct: 228 AGVLARSKKGGSAKTHVFVHDMNRDVERICSNEFLCKENLVETTDLLGHFVVETMKP--- 284

Query: 296 NEEQSFKFCKS 306
               SF+FC++
Sbjct: 285 ---NSFRFCRN 292

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224103635|ref|XP_002313132.1| predicted protein [Populus trichocarpa] gi|222849540|gb|EEE87087.1| predicted protein [Populus trichocarpa]

 Score =  352 bits (904), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 186/315 (59%), Positives = 225/315 (71%), Gaps = 18/315 (5%)

Query: 1   MKNNINTKLILLRPSTIHKPTTTTTTITTHRFYLLFFLTFFTLAFTLTFFTTAINPASSV 60
           MK N NTK ILL PS IHK     T  ++HR  LLF +T FT+AFTLT            
Sbjct: 1   MKTNTNTKFILLHPS-IHK-----TLPSSHRLRLLFIVTSFTIAFTLT---LFTTTTFPT 51

Query: 61  ASTAKSLPSSSSSSSSIITAALLHYTLTSNST---MTSAELTAVADALSRCSPSCNFLVF 117
            +T  +L +S++S    ITAALLHY  T+NST   M+SAEL+ +   L  CSP CNFLVF
Sbjct: 52  TTTTSTLTTSTTSLPLSITAALLHYASTANSTTPHMSSAELSTIVTTLQNCSPHCNFLVF 111

Query: 118 GLTHETLLWKSLNFQGHTIFVDESEFLVQSFEKNHPDFEIYDVQYTTKVEEMNPTLHAVR 177
           GLTHETLLWKSLNF G TIF+DESE+ V +FEK+HPD E YD+Q+T+KV EM+  L   +
Sbjct: 112 GLTHETLLWKSLNFHGRTIFLDESEYFVSNFEKDHPDIEAYDIQFTSKVSEMSDLLLVTK 171

Query: 178 KQFKDDCRPMQNLLFSDCKLAINDMPNHVYDMDWDVVLVDGPSGYFPRAPGRMAPIFTAS 237
            Q   DCRP+QNLLFSDCKL INDMPNH+Y++ WDV+L+DGP GYF  APGRM+PIFTA+
Sbjct: 172 GQVNGDCRPVQNLLFSDCKLGINDMPNHIYEISWDVILIDGPRGYFAAAPGRMSPIFTAA 231

Query: 238 VLARSKKAGRKKTHVFVHDFNREVERVCSEEFLCEENLVEVVDKLAHFVVEPMAPIEGNE 297
           V+ARSK+ G KKTHVFVH+ +REVE V SEEFLCEENLVE +D L HFV      +E  E
Sbjct: 232 VMARSKRGGNKKTHVFVHEIDREVEGVYSEEFLCEENLVETIDSLGHFV------LERKE 285

Query: 298 EQSFKFCKSSSPSSS 312
              F+FCK+S+  SS
Sbjct: 286 ANCFEFCKNSTSLSS 300

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224056152|ref|XP_002298736.1| predicted protein [Populus trichocarpa] gi|222845994|gb|EEE83541.1| predicted protein [Populus trichocarpa]

 Score =  344 bits (882), Expect = 4e-92,   Method: Compositional matrix adjust.
 Identities = 187/311 (60%), Positives = 227/311 (72%), Gaps = 18/311 (5%)

Query: 1   MKNNINTKLILLRPSTIHKPTTTTTTITTHRFYLLFFLTFFTLAFTLTFFTTAINPASSV 60
           MK N NTKLI L  S IHK     +  +THR + LF +TFFTLAFTLT            
Sbjct: 1   MKTNTNTKLIFLHQS-IHK-----SPPSTHRLWFLFIVTFFTLAFTLT---LFTTTTFPT 51

Query: 61  ASTAKSLPSSSSSSSSIITAALLHYTLTSNST---MTSAELTAVADALSRCSPSCNFLVF 117
            +T  +L +S++S    ITAALLHY  T+N T   M+SAEL+ +A  L  CSP CNFL+F
Sbjct: 52  TTTTSTLTTSTTSLPPSITAALLHYATTTNITTPHMSSAELSTIAITLQHCSPHCNFLIF 111

Query: 118 GLTHETLLWKSLNFQGHTIFVDESEFLVQSFEKNHPDFEIYDVQYTTKVEEMNPTLHAVR 177
           GLTHETLLWKSLNF G T+F+DESE+LV +FEKNHPD E YD+Q+TTKV +M+  L   +
Sbjct: 112 GLTHETLLWKSLNFHGRTVFLDESEYLVSNFEKNHPDIEAYDIQFTTKVSQMSDLLLVTK 171

Query: 178 KQFKDDCRPMQNLLFSDCKLAINDMPNHVYDMDWDVVLVDGPSGYFPRAPGRMAPIFTAS 237
            +   +CRP+QNLLFSDCKL INDMPNH+Y++ WDV+L+DGP GYF  APGRM+PIFTAS
Sbjct: 172 GKVNGECRPVQNLLFSDCKLGINDMPNHIYEITWDVILIDGPRGYFAAAPGRMSPIFTAS 231

Query: 238 VLARSKKAGRKKTHVFVHDFNREVERVCSEEFLCEENLVEVVDKLAHFVVEPMAPIEGNE 297
           VLARS + G KKTHVFVH+FNREVERV SEEFLC+E+LVE VD L HFV+E M      E
Sbjct: 232 VLARSSRGGNKKTHVFVHEFNREVERVYSEEFLCKESLVETVDSLGHFVLERM------E 285

Query: 298 EQSFKFCKSSS 308
             SF+FCK+S+
Sbjct: 286 ANSFEFCKNST 296

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15240242|ref|NP_201522.1| uncharacterized protein [Arabidopsis thaliana] gi|75170575|sp|Q9FH92.1|IX15L_ARATH RecName: Full=Protein IRX15-LIKE gi|10177608|dbj|BAB10955.1| unnamed protein product [Arabidopsis thaliana] gi|27765046|gb|AAO23644.1| At5g67210 [Arabidopsis thaliana] gi|110743406|dbj|BAE99589.1| hypothetical protein [Arabidopsis thaliana] gi|332010931|gb|AED98314.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  332 bits (852), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 166/326 (50%), Positives = 223/326 (68%), Gaps = 23/326 (7%)

Query: 3   NNINTKLILLRPSTIHKPTTTTTTITTHRFYLLFFLTFFTLAFTLTFFTT------AINP 56
            N NTKLIL+ P  I K T+T      +R +LL F++FFT+AF LT   T      + N 
Sbjct: 5   GNTNTKLILVHP-YIQKQTST------NRLWLLAFVSFFTIAFLLTLLYTTDSIISSKNN 57

Query: 57  ASSVASTAKSLPSSSSSSSSIITA--ALLHYTLTSNST--MTSAELTAVADALSRCSPSC 112
           +++V+S   S  ++++ S    TA  A+LHY   SN +  M+  E+ +++D L RCSP C
Sbjct: 58  SATVSSAVNSAVTTATISQLPTTAINAMLHYASRSNDSYHMSYGEMKSISDVLRRCSPPC 117

Query: 113 NFLVFGLTHETLLWKSLNFQGHTIFVDESEFLVQSFEKNHPDFEIYDVQYTTKVEEMNPT 172
           N LVFGLTHETLLWKSLN  G T+F++E+ +    FE+ HP+ E++DVQYTTK  E    
Sbjct: 118 NLLVFGLTHETLLWKSLNHNGRTVFIEENRYYAAYFEEIHPEIEVFDVQYTTKAREAREL 177

Query: 173 LHAVRKQFKDDCRPMQNLLFSDCKLAINDMPNHVYDMDWDVVLVDGPSGYFPRAPGRMAP 232
           + AV++  +++CRP+QNLLFSDCKL +ND+PNHVYD+DWDV+LVDGP G     PGRM+ 
Sbjct: 178 VSAVKEAARNECRPVQNLLFSDCKLGLNDLPNHVYDVDWDVILVDGPRGDGGDVPGRMSS 237

Query: 233 IFTASVLARSKKAGRKKTHVFVHDFNREVERVCSEEFLCEENLVEVVDKLAHFVVEPMAP 292
           IFTA+VLARSKK G  KTHVFVHD+ R+VER+C +EFLC ENLVE  D LAH+V+E M  
Sbjct: 238 IFTAAVLARSKKGGNPKTHVFVHDYYRDVERLCGDEFLCRENLVESNDLLAHYVLEKM-- 295

Query: 293 IEGNEEQSFKFCKSSSPSSSLSSPSS 318
               ++ S +FC+      S+SSPS+
Sbjct: 296 ----DKNSTQFCRGRKKKRSVSSPSA 317

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225438797|ref|XP_002283187.1| PREDICTED: uncharacterized protein LOC100259508 [Vitis vinifera]

 Score =  330 bits (847), Expect = 4e-88,   Method: Compositional matrix adjust.
 Identities = 167/310 (53%), Positives = 218/310 (70%), Gaps = 17/310 (5%)

Query: 1   MKN-NINTKLILLRPSTIHKPTTTTTTITTHRFYLLFFLTFFTLAFTLTF-FTTAINPAS 58
           MKN N NTKLILL P  I K  ++      +R +LL F++FFTLAF LT  +T    P +
Sbjct: 1   MKNGNGNTKLILLHP-YIQKQGSS------NRLWLLAFISFFTLAFLLTLIYTRDSIPTT 53

Query: 59  SVASTAKSLPSSSSSSSSIITAALLHYTLTSNST--MTSAELTAVADALSRCSPSCNFLV 116
             A+ + +  S++   +  +  AL+HY    N++  M++AEL  ++D L +CSP CNFLV
Sbjct: 54  VAAAASAAPKSANPLLAKPVVDALVHYASNYNTSGHMSNAELKMISDVLRKCSPPCNFLV 113

Query: 117 FGLTHETLLWKSLNFQGHTIFVDESEFLVQSFEKNHPDFEIYDVQYTTKVEEMNPTLHAV 176
           FGLT ETLLWK+LN  G T+F+DE+ +     E+ HP  E YDVQYTTK+ EMN  +  V
Sbjct: 114 FGLTLETLLWKALNHNGRTVFIDENRYYAAYVEEKHPGIEAYDVQYTTKISEMNDLIAYV 173

Query: 177 RKQFKDDCRPMQNLLFSDCKLAINDMPNHVYDMDWDVVLVDGPSGYFPRAPGRMAPIFTA 236
           ++  +++CRP+QNLLFSDCKL +ND+PNH Y++DWDV+L+DGP  Y+P APGRM+PIFTA
Sbjct: 174 KETIRNECRPVQNLLFSDCKLGLNDLPNHAYELDWDVILIDGPREYWPEAPGRMSPIFTA 233

Query: 237 SVLARSKKAGRKKTHVFVHDFNREVERVCSEEFLCEENLVEVVDKLAHFVVEPMAPIEGN 296
            VLARSKK G  KTHVFVHDFNR+VERV S+EFLC+ENLVE  D L HFVVE M      
Sbjct: 234 GVLARSKKGGSPKTHVFVHDFNRKVERVSSKEFLCKENLVESQDWLGHFVVERM------ 287

Query: 297 EEQSFKFCKS 306
           EE  F+FC++
Sbjct: 288 EENVFQFCRN 297

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449438392|ref|XP_004136972.1| PREDICTED: uncharacterized protein LOC101203456 [Cucumis sativus] gi|449527982|ref|XP_004170986.1| PREDICTED: uncharacterized protein LOC101227615 [Cucumis sativus]

 Score =  327 bits (838), Expect = 4e-87,   Method: Compositional matrix adjust.
 Identities = 173/326 (53%), Positives = 224/326 (68%), Gaps = 20/326 (6%)

Query: 1   MKNNINTKLILLRPSTIHKPTTTTTTIT-----THRFYLLFFLTFFTLAFTLTF----FT 51
           MK+  N KLILL PS   +P  T T  +     + R +L  FLTFFTLAFTLT     F+
Sbjct: 1   MKSTANAKLILLHPSIHKQPLPTPTPASGPPTLSPRRWLFSFLTFFTLAFTLTLINSTFS 60

Query: 52  TAINPASSVASTAKSLPSSSSSSSSIITAALLHYTLT-SNST---MTSAELTAVADALSR 107
           T+     S+A  A ++ +S++     I++ALLHY    +NST   M++AEL+++A ALS 
Sbjct: 61  TSTASRRSLAGHAPNV-ASTAPLPHPISSALLHYAAADTNSTKPHMSTAELSSIAVALSP 119

Query: 108 CSPSCNFLVFGLTHETLLWKSLNFQGHTIFVDESEFLVQSFEKNHPDFEIYDVQYTTKVE 167
           C+P+CNFL+FGLTHE+LLW++LN  G T+F+DE+EF V  FE+++P  E YDVQYTTKV 
Sbjct: 120 CAPACNFLIFGLTHESLLWRALNHAGVTVFLDENEFQVSKFEQSNPGTEAYDVQYTTKVS 179

Query: 168 EMNPTLHAVRKQFKDDCRPMQNLLFSDCKLAINDMPNHVYDMDWDVVLVDGPSGYFPRAP 227
           EM   L   + Q  ++C+P+QNLLFS+CKL IND+PNH+Y + WDV+LVDGP GY   +P
Sbjct: 180 EMKELLFLAKSQADNECKPVQNLLFSECKLGINDLPNHIYQVPWDVILVDGPRGYNAGSP 239

Query: 228 GRMAPIFTASVLARSK-KAGRKKTHVFVHDFNREVERVCSEEFLCEENLVEVVDKLAHFV 286
           GRM+ IFTA VLARSK   G  KTHVFVH+  REVER+ SEEFLC ENL E VD L HFV
Sbjct: 240 GRMSAIFTAGVLARSKCGKGNSKTHVFVHEMGREVERIYSEEFLCRENLAESVDSLGHFV 299

Query: 287 VEPMAPIEGNEEQSFKFCKSSSPSSS 312
           VE +      E +  +FCK+SS  SS
Sbjct: 300 VEKV-----RERKGGRFCKNSSSGSS 320

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297797657|ref|XP_002866713.1| nucleic acid binding protein [Arabidopsis lyrata subsp. lyrata] gi|297312548|gb|EFH42972.1| nucleic acid binding protein [Arabidopsis lyrata subsp. lyrata]

 Score =  323 bits (828), Expect = 7e-86,   Method: Compositional matrix adjust.
 Identities = 163/326 (50%), Positives = 222/326 (68%), Gaps = 24/326 (7%)

Query: 3   NNINTKLILLRPSTIHKPTTTTTTITTHRFYLLFFLTFFTLAFTLTFF--TTAINPASSV 60
            N NTKLIL+ P  I K T+T      +R +LL F++FFT+AF LT    T ++ P+ + 
Sbjct: 5   GNTNTKLILVHP-YIQKQTST------NRLWLLAFVSFFTIAFLLTLLYTTDSLIPSKNN 57

Query: 61  ASTAKSLPSSSSSSSSIITA------ALLHYTLTSNST--MTSAELTAVADALSRCSPSC 112
           ++T     +S+ S++ I         A+LHY   SN +  M+  E+ +++D L RCSP C
Sbjct: 58  STTVSPTVNSAVSTAPITQLPTAAINAMLHYASRSNDSFHMSYGEMKSISDVLRRCSPPC 117

Query: 113 NFLVFGLTHETLLWKSLNFQGHTIFVDESEFLVQSFEKNHPDFEIYDVQYTTKVEEMNPT 172
           N LVFGLTHETLLWKSLN  G T+F++E+ +    FE+ HP+ E++DVQYTTK  E    
Sbjct: 118 NLLVFGLTHETLLWKSLNHNGRTVFIEENRYYAAYFEEIHPEIEVFDVQYTTKAREAREL 177

Query: 173 LHAVRKQFKDDCRPMQNLLFSDCKLAINDMPNHVYDMDWDVVLVDGPSGYFPRAPGRMAP 232
           + AV++  +++CRP+QNLLFSDCKL +ND+PNHVYD+DWDV+LVDGP G     PGRM+ 
Sbjct: 178 VSAVKEAARNECRPVQNLLFSDCKLGLNDLPNHVYDVDWDVILVDGPRGDGGDVPGRMSS 237

Query: 233 IFTASVLARSKKAGRKKTHVFVHDFNREVERVCSEEFLCEENLVEVVDKLAHFVVEPMAP 292
           IFTA+VLARSKK G  KTHVFVHD+ R+VER+C +EFLC ENLVE  D LAH+V++ M  
Sbjct: 238 IFTAAVLARSKKGGNPKTHVFVHDYYRDVERLCGDEFLCRENLVESNDMLAHYVLDRM-- 295

Query: 293 IEGNEEQSFKFCKSSSPSSSLSSPSS 318
               ++ S +FC+      S+SSPS+
Sbjct: 296 ----DKNSTQFCRGRK-KRSVSSPSA 316

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|21593034|gb|AAM64983.1| unknown [Arabidopsis thaliana]

 Score =  316 bits (810), Expect = 8e-84,   Method: Compositional matrix adjust.
 Identities = 166/330 (50%), Positives = 217/330 (65%), Gaps = 32/330 (9%)

Query: 1   MKN---NINTKLILLRPSTIHKPTTTTTTITTHRFYLLFFLTFFTLAFTLTFF------- 50
           MKN   N NTKLILL P  I K T+TT      R +LL F++FFT+ F LT         
Sbjct: 1   MKNGSGNTNTKLILLHP-YIQKQTSTT------RLWLLAFVSFFTIVFLLTLLYTRDTIP 53

Query: 51  --TTAINPASSVASTAKSLPSSSS--SSSSIITAA---LLHYTLTSNST--MTSAELTAV 101
              T++  A +   T  S PS+SS  S+S++ T+A   LLHY   SN +  M+  E+ ++
Sbjct: 54  SKNTSVAAAVAAVVTGGSTPSASSPISNSNLPTSAINALLHYASRSNDSFHMSYGEMKSI 113

Query: 102 ADALSRCSPSCNFLVFGLTHETLLWKSLNFQGHTIFVDESEFLVQSFEKNHPDFEIYDVQ 161
           +D L RC+P CN LVFGLTHETLLWKSLN  G T+F++E+ +    FE+ HP+ +++DVQ
Sbjct: 114 SDVLRRCAPPCNLLVFGLTHETLLWKSLNHNGRTLFIEENRYYAAYFEEIHPEIDVFDVQ 173

Query: 162 YTTKVEEMNPTLHAVRKQFKDDCRPMQNLLFSDCKLAINDMPNHVYDMDWDVVLVDGPSG 221
           YTTK  E    + A ++   ++CRP+QNLLFSDCKL +ND+PNHVYD+DWDV+ VDGP G
Sbjct: 174 YTTKAHEAGELVTAAKEAAGNECRPVQNLLFSDCKLGLNDLPNHVYDVDWDVIFVDGPRG 233

Query: 222 YFPRAPGRMAPIFTASVLARSKKAGRKKTHVFVHDFNREVERVCSEEFLCEENLVEVVDK 281
                PGRM+ IFTA+VLARSKK G  KTHVFVHD+ R+VER+C +EFLC ENLVE  D 
Sbjct: 234 DAHEGPGRMSSIFTAAVLARSKKGGNPKTHVFVHDYYRDVERLCGDEFLCRENLVESNDL 293

Query: 282 LAHFVVEPMAPIEGNEEQSFKFCKSSSPSS 311
           LAH+V++ M      ++ S KFC      S
Sbjct: 294 LAHYVLDKM------DKNSTKFCNGRKKRS 317

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	338
TAIR|locus:2155518	317	IRX15-L "AT5G67210" [Arabidops	0.642	0.684	0.573	3.7e-72
TAIR|locus:2074815	322	IRX15 "AT3G50220" [Arabidopsis	0.639	0.670	0.558	6.8e-71
TAIR|locus:2047158	329	AT2G15440 "AT2G15440" [Arabido	0.644	0.662	0.546	1.6e-65
TAIR|locus:2013066	295	AT1G71690 "AT1G71690" [Arabido	0.633	0.725	0.398	2.3e-39
TAIR|locus:2012350	282	GXM3 "glucuronoxylan methyltra	0.633	0.758	0.391	3.7e-39
TAIR|locus:2010449	289	AT1G27930 "AT1G27930" [Arabido	0.639	0.747	0.392	6.1e-39
TAIR|locus:2012728	297	GXMT1 "glucuronoxylan methyltr	0.585	0.666	0.410	3e-37
TAIR|locus:2140518	290	GXM2 "glucuronoxylan methyltra	0.582	0.679	0.419	3.9e-37
TAIR|locus:2019519	291	AT1G67330 "AT1G67330" [Arabido	0.639	0.742	0.367	8e-37
TAIR|locus:2117378	315	AT4G24910 "AT4G24910" [Arabido	0.541	0.580	0.376	5e-28

TAIR|locus:2155518 IRX15-L "AT5G67210" [Arabidopsis thaliana (taxid:3702)]

 Score = 707 (253.9 bits), Expect = 3.7e-72, Sum P(2) = 3.7e-72
 Identities = 129/225 (57%), Positives = 167/225 (74%)

Query:    83 LHYTLTSNST--MTSAELTAVADALSRCSPSCNFLVFGLTHETLLWKSLNFQGHTIFVDE 140
             LHY   SN +  M+  E+ +++D L RCSP CN LVFGLTHETLLWKSLN  G T+F++E
Sbjct:    86 LHYASRSNDSYHMSYGEMKSISDVLRRCSPPCNLLVFGLTHETLLWKSLNHNGRTVFIEE 145

Query:   141 SEFLVQSFEKNHPDFEIYDVQYTTKVEEMNPTLHAVRKQFKDDCRPMQNLLFSDCKLAIN 200
             + +    FE+ HP+ E++DVQYTTK  E    + AV++  +++CRP+QNLLFSDCKL +N
Sbjct:   146 NRYYAAYFEEIHPEIEVFDVQYTTKAREARELVSAVKEAARNECRPVQNLLFSDCKLGLN 205

Query:   201 DMPNHVYDMDWDVVLVDGPSGYFPRAPGRMAPIFTASVLARSKKAGRKKTHVFVHDFNRE 260
             D+PNHVYD+DWDV+LVDGP G     PGRM+ IFTA+VLARSKK G  KTHVFVHD+ R+
Sbjct:   206 DLPNHVYDVDWDVILVDGPRGDGGDVPGRMSSIFTAAVLARSKKGGNPKTHVFVHDYYRD 265

Query:   261 VERVCSEEFLCEENLVEVVDKLAHFVVEPMAPIEGNEEQSFKFCK 305
             VER+C +EFLC ENLVE  D LAH+V+E M      ++ S +FC+
Sbjct:   266 VERLCGDEFLCRENLVESNDLLAHYVLEKM------DKNSTQFCR 304

GO:0003674 "molecular_function" evidence=ND

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0009834 "secondary cell wall biogenesis" evidence=IMP

GO:0045492 "xylan biosynthetic process" evidence=RCA;IMP

GO:0010413 "glucuronoxylan metabolic process" evidence=RCA

TAIR|locus:2074815 IRX15 "AT3G50220" [Arabidopsis thaliana (taxid:3702)]

 Score = 689 (247.6 bits), Expect = 6.8e-71, Sum P(2) = 6.8e-71
 Identities = 125/224 (55%), Positives = 163/224 (72%)

Query:    83 LHYTLTSNST--MTSAELTAVADALSRCSPSCNFLVFGLTHETLLWKSLNFQGHTIFVDE 140
             LHY   SN +  M+  E+ +++D L RC+P CN LVFGLTHETLLWKSLN  G T+F++E
Sbjct:    93 LHYASRSNDSFHMSYGEMKSISDVLRRCAPPCNLLVFGLTHETLLWKSLNHNGRTVFIEE 152

Query:   141 SEFLVQSFEKNHPDFEIYDVQYTTKVEEMNPTLHAVRKQFKDDCRPMQNLLFSDCKLAIN 200
             + +    FE+ HP+ +++DVQYTTK  E    + A ++   ++CRP+QNLLFSDCKL +N
Sbjct:   153 NRYYAAYFEEIHPEIDVFDVQYTTKAHEAGELVTAAKEAAGNECRPVQNLLFSDCKLGLN 212

Query:   201 DMPNHVYDMDWDVVLVDGPSGYFPRAPGRMAPIFTASVLARSKKAGRKKTHVFVHDFNRE 260
             D+PNHVYD+DWDV+ VDGP G     PGRM+ IFTA+VLARSKK G  KTHVFVHD+ R+
Sbjct:   213 DLPNHVYDVDWDVIFVDGPRGDAHEGPGRMSSIFTAAVLARSKKGGTPKTHVFVHDYYRD 272

Query:   261 VERVCSEEFLCEENLVEVVDKLAHFVVEPMAPIEGNEEQSFKFC 304
             VER+C +EFLC ENLVE  D LAH+V++ M      ++ S KFC
Sbjct:   273 VERLCGDEFLCRENLVESNDLLAHYVLDKM------DKNSTKFC 310

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0009834 "secondary cell wall biogenesis" evidence=IMP

GO:0045492 "xylan biosynthetic process" evidence=RCA;IMP

GO:0010413 "glucuronoxylan metabolic process" evidence=RCA

TAIR|locus:2047158 AT2G15440 "AT2G15440" [Arabidopsis thaliana (taxid:3702)]

 Score = 645 (232.1 bits), Expect = 1.6e-65, Sum P(2) = 1.6e-65
 Identities = 124/227 (54%), Positives = 164/227 (72%)

Query:    83 LHYTLTS--NSTMTSAELTAVADALSRCSPSCNFLVFGLTHETLLWKSLNFQGHTIFVDE 140
             LHYT +S  N++M+  EL+ +++ +    P+CN L+FGLTHE+LLW+S+NFQG T+FVDE
Sbjct:    83 LHYTSSSPPNTSMSFLELSTISNIIHSHGPACNLLIFGLTHESLLWRSINFQGRTVFVDE 142

Query:   141 SEFLVQSFEKNHPDFEIYDVQYTTKVEEMNPTLHAVRKQFKDDCRPMQNLLFSDCKLAIN 200
             S + V  FE+++P  E Y+V Y+TKV +    L   +   + +CRP+QNLLFSDCKL IN
Sbjct:   143 SPYSVSKFEQSNPGVEAYEVVYSTKVSQAKKLLGYYKT--RPECRPVQNLLFSDCKLGIN 200

Query:   201 DMPNHVYDMDWDVVLVDGPSGYFPRAPGRMAPIFTASVLARSKKAGRK--KTHVFVHDFN 258
             D+PN VY++DWDV+L+DGP GY   +PGRMAPIFT++VLA+SK  G K  KT V VH+F 
Sbjct:   201 DLPNFVYEIDWDVILIDGPRGYASDSPGRMAPIFTSAVLAKSKDFGTKTKKTDVLVHEFG 260

Query:   259 REVERVCSEEFLCEENLVEVVDKLAHFVVEPMAPIEGNEEQSFKFCK 305
             R++ERV SEEFLCEENL+EVV  L HFVV   A  E  E     FC+
Sbjct:   261 RKIERVYSEEFLCEENLIEVVGDLGHFVV---AAAEERESYGDGFCR 304

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

TAIR|locus:2013066 AT1G71690 "AT1G71690" [Arabidopsis thaliana (taxid:3702)]

 Score = 420 (152.9 bits), Expect = 2.3e-39, P = 2.3e-39
 Identities = 90/226 (39%), Positives = 134/226 (59%)

Query:    83 LHYTLTSNST--MTSAELTAVADALSRCSPSCNFLVFGLTHETLLWKSLNFQGHTIFVDE 140
             +HY  +SN T   T +E++     L + SP CNFLVFGL H++L+W +LN  G TIF+DE
Sbjct:    77 VHYA-SSNVTPQQTLSEISVTKKELEKKSP-CNFLVFGLGHDSLMWATLNHGGRTIFLDE 134

Query:   141 SEFLVQSFEKNHPDFEIYDVQYTTKVEEMNPTLHAVRKQFKDDCRPMQ-NLLFSDCKLAI 199
              E  +    +  P  E Y V+Y TKV +    + A +   +++CR +  +L  S C+LA+
Sbjct:   135 DESWIHQIAEKFPSLESYHVRYKTKVRDAEALMAATKD--REECRRVSTDLRVSTCELAL 192

Query:   200 NDMPNHVYDMDWDVVLVDGPSGYFPRAPGRMAPIFTASVLARSKKAGRKKTHVFVHDFNR 259
               +P  VY+ +WD+++VD P+G+   APGRM+ I+TA ++AR +K   + T VFVHD +R
Sbjct:   193 KGLPEVVYETEWDLIMVDAPTGFHEEAPGRMSAIYTAGMIARRRKDEEETTAVFVHDVDR 252

Query:   260 EVERVCSEEFLCEENLVEVVDKLAHFVVEPMAPIEGNEEQS-FKFC 304
             +VE   S EFLC + + +   +L HF V    P   N   S  KFC
Sbjct:   253 KVEDEFSMEFLCRDYMTKQEGRLRHFTV----PSHRNYGVSGVKFC 294

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2012350 GXM3 "glucuronoxylan methyltransferase 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 418 (152.2 bits), Expect = 3.7e-39, P = 3.7e-39
 Identities = 88/225 (39%), Positives = 138/225 (61%)

Query:    83 LHYTLTSNST--MTSAELTAVADALSRCSPSCNFLVFGLTHETLLWKSLNFQGHTIFVDE 140
             +HY+ TS  T   T  E+   +  L + SP CNFLVFGL H++L+W SLN+ G T+F++E
Sbjct:    65 IHYS-TSVITPQQTLKEIAVSSRVLGKKSP-CNFLVFGLGHDSLMWSSLNYGGRTVFLEE 122

Query:   141 SEFLVQSFEKNHPDFEIYDVQYTTKVEEMNPTLHAVRKQFKDDCRPMQNLLFSDCKLAIN 200
              E  ++  ++  P  E Y V Y +KV + +  L  V K    +C  + +  +S C+LA+ 
Sbjct:   123 DEAWIKQIKRRFPMLESYHVTYDSKVNQAD-NLIEVGKG--PECTAIGDPRYSMCQLALK 179

Query:   201 DMPNHVYDMDWDVVLVDGPSGYFPRAPGRMAPIFTASVLARSKKAGRKKTHVFVHDFNRE 260
              +P  +Y+  WD+++VD P+GY+  APGRM  I+TA ++AR++K G + T VFVHD NRE
Sbjct:   180 GLPAEIYETGWDLIMVDAPTGYYDEAPGRMTAIYTAGMMARNRKQGGE-TDVFVHDVNRE 238

Query:   261 VERVCSEEFLCEENLVEVVDKLAHFVVEPMAPIEGNEEQSFK-FC 304
             +E   S+ FLCE  + +   +L HF++      +G+E +S + FC
Sbjct:   239 IEDKFSKAFLCEGYMKKQEGRLRHFIIPSYR--DGSESESNRPFC 281

GO:0005576 "extracellular region" evidence=ISM

GO:0010413 "glucuronoxylan metabolic process" evidence=RCA

GO:0045492 "xylan biosynthetic process" evidence=RCA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0030775 "glucuronoxylan 4-O-methyltransferase activity" evidence=IDA

GO:0045491 "xylan metabolic process" evidence=IMP

TAIR|locus:2010449 AT1G27930 "AT1G27930" [Arabidopsis thaliana (taxid:3702)]

 Score = 416 (151.5 bits), Expect = 6.1e-39, P = 6.1e-39
 Identities = 89/227 (39%), Positives = 137/227 (60%)

Query:    83 LHYTLTSNST--MTSAELTAVADALSRCSPSCNFLVFGLTHETLLWKSLNFQGHTIFVDE 140
             +HY  TSN       AE++   + L + +P+ NFLVFGL  ++L+W SLN +G T+F++E
Sbjct:    69 VHYA-TSNVVPQQNLAEISISFNILKKLAPA-NFLVFGLGRDSLMWASLNPRGKTLFLEE 126

Query:   141 SEFLVQSFEKNHPDFEIYDVQYTTKVEEMNPTLHAVRKQFKDDCRPMQNLLFSD--CKLA 198
                  Q   K+ P    + V+Y T++++ +  L + + + K  C P ++ L  +  CKLA
Sbjct:   127 DLEWFQKVTKDSPFLRAHHVRYRTQLQQADSLLRSYKTEPK--CFPAKSYLRGNEKCKLA 184

Query:   199 INDMPNHVYDMDWDVVLVDGPSGYFPRAPGRMAPIFTASVLARS-KKAGRKKTHVFVHDF 257
             +  +P+  YD +WD+++VD P GYF  APGRMA IF+A+V+AR+ KK G   THVF+HD 
Sbjct:   185 LTGLPDEFYDTEWDLLMVDAPKGYFAEAPGRMAAIFSAAVMARNRKKPG--VTHVFLHDV 242

Query:   258 NREVERVCSEEFLCEENLVEVVDKLAHFVVEPMAPIEGNEEQSFKFC 304
             NR VE+  +EEFLC +  V    +L HF + P A     +   ++FC
Sbjct:   243 NRRVEKTFAEEFLCRKYRVNAAGRLWHFAIPPAAANATIDSGDYRFC 289

GO:0008150 "biological_process" evidence=ND

GO:0005515 "protein binding" evidence=IPI

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0006857 "oligopeptide transport" evidence=RCA

GO:0005768 "endosome" evidence=IDA

GO:0005802 "trans-Golgi network" evidence=IDA

TAIR|locus:2012728 GXMT1 "glucuronoxylan methyltransferase 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 400 (145.9 bits), Expect = 3.0e-37, P = 3.0e-37
 Identities = 85/207 (41%), Positives = 124/207 (59%)

Query:    83 LHYTLTSNST--MTSAELTAVADALSRCSPSCNFLVFGLTHETLLWKSLNFQGHTIFVDE 140
             +HY +TSN T   T  E++     L + SP CNFLVFGL H++L+W SLN  G T+F++E
Sbjct:    78 VHY-VTSNVTPQQTFDEVSVSKRVLDKKSP-CNFLVFGLGHDSLMWASLNHGGRTLFIEE 135

Query:   141 SEFLVQSFEKNHPDFEIYDVQYTTKVEEMNPTLHAVRKQFKDDCRPMQNLLFSDCKLAIN 200
              +  +    K  P+ E Y V Y TKV++ +  +   R +   +CR + +   S C LA+ 
Sbjct:   136 DQAWIAIVTKKFPNLESYHVVYDTKVKDSDKLMELGRSE---ECRSVSDPRNSKCDLALK 192

Query:   201 DMPNHVYDMDWDVVLVDGPSGYFPRAPGRMAPIFTASVLARSKKAGRKKTHVFVHDFNRE 260
             D P   Y+  WD+++VD P+GY   APGRM+ I+TA +LAR+++ G  +T VFVHD NR 
Sbjct:   193 DFPADFYETKWDLIMVDAPTGYHEEAPGRMSAIYTAGLLARNREDG--ETDVFVHDVNRP 250

Query:   261 VERVCSEEFLCEENLVEVVDKLAHFVV 287
             VE   S  FLC+  + E   +L HF +
Sbjct:   251 VEDEFSATFLCKGYMREQNGRLRHFTI 277

GO:0005739 "mitochondrion" evidence=ISM

GO:0010413 "glucuronoxylan metabolic process" evidence=RCA

GO:0045492 "xylan biosynthetic process" evidence=RCA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0005976 "polysaccharide metabolic process" evidence=IDA

GO:0009808 "lignin metabolic process" evidence=IMP

GO:0030775 "glucuronoxylan 4-O-methyltransferase activity" evidence=IDA

GO:0045491 "xylan metabolic process" evidence=IMP

TAIR|locus:2140518 GXM2 "glucuronoxylan methyltransferase 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 399 (145.5 bits), Expect = 3.9e-37, P = 3.9e-37
 Identities = 86/205 (41%), Positives = 122/205 (59%)

Query:    83 LHYTLTSNST--MTSAELTAVADALSRCSPSCNFLVFGLTHETLLWKSLNFQGHTIFVDE 140
             +HY +TS  T   T  E++     L + SP CNFLVFGL H++L+W SLN  G T+F++E
Sbjct:    70 VHY-VTSEITPQQTFDEVSVSKRVLDKKSP-CNFLVFGLGHDSLMWASLNHGGRTLFLEE 127

Query:   141 SEFLVQSFEKNHPDFEIYDVQYTTKVEEMNPTLHAVRKQFKDDCRPMQNLLFSDCKLAIN 200
              E  +++  K  P+ E Y V Y TKV++ N  +   R +   DC+ + +   S C L++ 
Sbjct:   128 DEAWIETVTKKFPNLESYHVVYDTKVKDSNKLMELKRTE---DCKAVSDPRDSKCALSLK 184

Query:   201 DMPNHVYDMDWDVVLVDGPSGYFPRAPGRMAPIFTASVLARSKKAGRKKTHVFVHDFNRE 260
               P  VY+  WDV++VD P+GY   APGRM+ I+TA +LAR++  G + T VFVHD NR 
Sbjct:   185 GFPADVYETQWDVIMVDAPTGYHDEAPGRMSAIYTAGLLARNRYDGGE-TDVFVHDINRP 243

Query:   261 VERVCSEEFLCEENLVEVVDKLAHF 285
             VE   S  FLC   + E   +L HF
Sbjct:   244 VEDEFSVAFLCGGYMKEQQGRLRHF 268

GO:0005576 "extracellular region" evidence=ISM

GO:0010054 "trichoblast differentiation" evidence=RCA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0030775 "glucuronoxylan 4-O-methyltransferase activity" evidence=IDA

GO:0045491 "xylan metabolic process" evidence=IMP

TAIR|locus:2019519 AT1G67330 "AT1G67330" [Arabidopsis thaliana (taxid:3702)]

 Score = 396 (144.5 bits), Expect = 8.0e-37, P = 8.0e-37
 Identities = 83/226 (36%), Positives = 132/226 (58%)

Query:    83 LHYTLTSNSTMTSAELTAVA-DALSRCSPSCNFLVFGLTHETLLWKSLNFQGHTIFVDES 141
             +HY  +      S E  +++ + L    P CNFLVFGL  ++L+W SLN  G T+F++E 
Sbjct:    72 VHYATSHTVPQQSFEEISISLNVLKERLP-CNFLVFGLGRDSLMWASLNPGGTTVFLEED 130

Query:   142 EFLVQSFEKNHPDFEIYDVQYTTKVEEMNPTLHAVRKQFKDDCRPMQN--LLFSD-CKLA 198
                +++  K+ P    + VQY T + E    L   + +    C P +   + +++ C LA
Sbjct:   131 PEWIEAVLKDAPSLRAHHVQYRTHLSEAGRLLSTYKNE--PMCLPAKAFPIRYNEKCPLA 188

Query:   199 INDMPNHVYDMDWDVVLVDGPSGYFPRAPGRMAPIFTASVLARSKKAGRKKTHVFVHDFN 258
             +  +P+  YD +WD+++VD P GYFP APGRMA IF+++++AR++K G   THVF+HD N
Sbjct:   189 LTSLPDEFYDTEWDLIMVDAPKGYFPEAPGRMAAIFSSAIMARNRK-GDGTTHVFLHDVN 247

Query:   259 REVERVCSEEFLCEENLVEVVDKLAHFVVEPMAPIEGNEEQSFKFC 304
             R+VE   + EFLCE+  V  V +L HF +   A +   ++   +FC
Sbjct:   248 RKVENAFANEFLCEKYKVNSVGRLWHFEIPNAANM--TDQPGDRFC 291

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0010167 "response to nitrate" evidence=RCA

GO:0015706 "nitrate transport" evidence=RCA

GO:0005768 "endosome" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0005802 "trans-Golgi network" evidence=IDA

TAIR|locus:2117378 AT4G24910 "AT4G24910" [Arabidopsis thaliana (taxid:3702)]

 Score = 313 (115.2 bits), Expect = 5.0e-28, P = 5.0e-28
 Identities = 72/191 (37%), Positives = 108/191 (56%)

Query:    91 STMTSAELTAVADALSRCSPSCNFLVFGLTHETLLWKSLNFQGHTIFVDE--SEFLVQSF 148
             + +   EL  ++D ++R SP CN LVFG   + L+  S+N +G T+ +++  ++ ++   
Sbjct:    99 TALMEKELKLLSDTVTRRSP-CNILVFGFAPQYLMLSSINTRGITVILEDEPAKIMIPKA 157

Query:   149 EKNHPDFEIYDVQYTTKVEEMNPTLHAVRKQFKDDCRPMQNLLF---SDCKLAINDMPNH 205
             E N  +  IY ++Y  ++E  N        +    C P  N      SDCKL + D+P  
Sbjct:   158 EVNPNNTRIYSLKYH-QMEVRNAYNLLQHARANPACAPNMNNQHQGSSDCKLELRDLPQQ 216

Query:   206 VYDMDWDVVLVDGPSGYFPRAPGRMAPIFTASVLARSKKAGRKKTHVFVHDFNREVERVC 265
             V++  WDV++VDGP G     PGRM  I+TA+VLAR K +    T VFVHD +R  E+  
Sbjct:   217 VHNTKWDVIVVDGPRGDDLETPGRMGSIYTAAVLAR-KGSSNSTTDVFVHDVHRTAEKWL 275

Query:   266 SEEFLCEENLV 276
             S EFLC+ENLV
Sbjct:   276 SWEFLCQENLV 286


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.321   0.135   0.412    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      338       263   0.00091  114 3  11 22  0.45    33
                                                     32  0.49    36


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  10
  No. of states in DFA:  612 (65 KB)
  Total size of DFA:  220 KB (2121 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  22.38u 0.12s 22.50t   Elapsed:  00:00:01
  Total cpu time:  22.38u 0.12s 22.50t   Elapsed:  00:00:01
  Start:  Thu May  9 21:22:03 2013   End:  Thu May  9 21:22:04 2013

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9FH92	IX15L_ARATH	No assigned EC number	0.5092	0.8964	0.9558	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00036632001 SubName- Full=Chromosome chr3 scaffold_8, whole genome shotgun sequence; (339 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	338
TIGR01627	225	TIGR01627, A_thal_3515, uncharacterized plant-spec	1e-80
pfam04669	134	pfam04669, Polysacc_synt_4, Polysaccharide biosynt	2e-31

>gnl|CDD|130688 TIGR01627, A_thal_3515, uncharacterized plant-specific domain TIGR01627

 Score =  244 bits (624), Expect = 1e-80
 Identities = 99/226 (43%), Positives = 132/226 (58%), Gaps = 12/226 (5%)

Query: 81  ALLHYTLTSNST-MTSAELTAVADALSRCSPSCNFLVFGLTHETLLWKSLNFQGHTIFVD 139
           AL HY  ++  T +   EL  ++D L+R SP CN LVFGL H+ L+W SLN +G T+F++
Sbjct: 10  ALQHYRASNGPTALMEKELKLLSDVLTRRSP-CNILVFGLAHQYLMWSSLNHRGRTVFIE 68

Query: 140 ESEFLVQSFEKNHPDFEIYDVQYTTKVEEMNPTLHAVRKQFKDDCRP-MQNLLFSDCKLA 198
           E + ++   E N P+  IY V+Y TKV      L   R     +CRP M +   SDCKL 
Sbjct: 69  EEKIMIAKAEVNPPNTRIYSVKYHTKVRNAYNLLQHARAN--PECRPVMNHQGSSDCKLE 126

Query: 199 INDMPNHVYDMDWDVVLVDGPSGYFPRAPGRMAPIFTASVLARSKKAGRKKTHVFVHDFN 258
           + D+P  VY+  WDV++VDGP G     PGRM+ I+TA+VLAR   +G   T VFVHD +
Sbjct: 127 LRDLPQQVYNTKWDVIVVDGPRGDDLETPGRMSSIYTAAVLARKGSSG-STTDVFVHDVH 185

Query: 259 REVERVCSEEFLCEENLVEVVDKLAHFVVEPMAPIEGNEEQSFKFC 304
           R VE+  S EFLC+ENLVE    L HF ++           S  FC
Sbjct: 186 RTVEKWLSWEFLCQENLVEANGTLWHFRIKRQ------SNASRAFC 225

This model represents an uncharacterized domain found in both Arabidopsis thaliana (at least 10 copies) and Oryza sativa. Most member proteins have only a short stretch of sequence N-terminal to this domain, but one has a long N-terminal extension that includes a protein kinase domain (pfam00069). Length = 225

>gnl|CDD|218202 pfam04669, Polysacc_synt_4, Polysaccharide biosynthesis

 Score =  114 bits (287), Expect = 2e-31
 Identities = 46/194 (23%), Positives = 63/194 (32%), Gaps = 64/194 (32%)

Query: 96  AELTAVADALSRCSPSCNFLVFGLTHETLLWKSLNFQGHTIFVDESEFLVQSFEKNHPDF 155
            E+     A+    P CN LVFGL   +L   +LN             + + F K  P+ 
Sbjct: 1   IEMQWAVKAVEHAEPYCNLLVFGLGPSSLRLTALNDG-----------IYEKFRKAFPEL 49

Query: 156 EIYDVQYTTKVEEMNPTLHAVRKQFKDDCRPMQNLLFSDCKLAINDMPNHVYDMDWDVVL 215
           E Y V Y TKV + +                              ++ +  Y   W  + 
Sbjct: 50  EAYHVAYRTKVLDAD------------------------------ELKSAAYKEKW-RIF 78

Query: 216 VDGPSGYFPRAPGRMAPIFTASVLARSKKAG--RKKTHVFVHDFNREVERVCSEEFLCEE 273
           VD P GY           + A  LARS  +     +  VFVH            +FLC E
Sbjct: 79  VDAPEGYVED--------YNAGTLARSDASKGYTPENTVFVHRV----------QFLCIE 120

Query: 274 NLVEVVD--KLAHF 285
                     L HF
Sbjct: 121 IARNREGLNDLVHF 134

This family of proteins plays a role in xylan biosynthesis in plant cell walls. Its precise role in xylan biosynthesis is unknown. Its function in other organisms is unknown. Length = 134

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	338
TIGR01627	225	A_thal_3515 uncharacterized plant-specific domain	100.0
PF04669	190	Polysacc_synt_4: Polysaccharide biosynthesis; Inte	100.0
COG0421	282	SpeE Spermidine synthase [Amino acid transport and	94.75
PLN02823	336	spermine synthase	94.04
PLN02476	278	O-methyltransferase	93.73
PLN02781	234	Probable caffeoyl-CoA O-methyltransferase	93.51
PF01596	205	Methyltransf_3: O-methyltransferase; InterPro: IPR	92.84
PRK01581	374	speE spermidine synthase; Validated	92.21
TIGR00417	270	speE spermidine synthase. the SpeE subunit of sper	91.65
PF01564	246	Spermine_synth: Spermine/spermidine synthase; Inte	89.48
PLN02366	308	spermidine synthase	89.09
PRK00811	283	spermidine synthase; Provisional	89.05
PLN02589	247	caffeoyl-CoA O-methyltransferase	86.91
PRK04457	262	spermidine synthase; Provisional	86.03
PRK03612	521	spermidine synthase; Provisional	83.82

>TIGR01627 A_thal_3515 uncharacterized plant-specific domain TIGR01627

Probab=100.00  E-value=6.7e-118  Score=812.82  Aligned_cols=222  Identities=44%  Similarity=0.777  Sum_probs=213.3

Q ss_pred             CCCcHHHHHHHHHhhccCCCC--CCHHHHHHHHHHHhhcCCCccEEEecCCchhhhhhhccCCCcEEEecCChhHHHHhh
Q 019623           72 SSSSSIITAALLHYTLTSNST--MTSAELTAVADALSRCSPSCNFLVFGLTHETLLWKSLNFQGHTIFVDESEFLVQSFE  149 (338)
Q Consensus        72 ~~lp~~v~~ALvHYAt~sn~t--qt~~Ei~~~~~vL~~~raPCNfLVFGLg~dsllW~aLN~gGrTVFLEEd~~~i~~~~  149 (338)
                      +++|++|++||||||| ||++  ||.+||+++++||++ ||||||||||||||||||++|||||||||||||++||++++
T Consensus         1 t~~p~~~a~AlvhYat-sn~t~q~s~~Ei~~~~~VL~~-raPCN~LVFGLghdsllW~aLN~gGrTvFLEEd~~~i~~~~   78 (225)
T TIGR01627         1 TTFPLSPADALQHYRA-SNGPTALMEKELKLLSDVLTR-RSPCNILVFGLAHQYLMWSSLNHRGRTVFIEEEKIMIAKAE   78 (225)
T ss_pred             CCCchhHHHHHHHHHh-cCCCcccCHHHHHHHHHHHHh-cCCceEEEeccCcchHHHHHhcCCCeeEEecCCHHHHHHHh
Confidence            4799999999999998 7888  999999999999999 99999999999999999999999999999999999999999


Q ss_pred             hcCCCceeEEeEecccccchHHHHHHHHhcCCCCCccccccc-cccccccccCCCcccccccccEEEEcCCCCCCCCCCC
Q 019623          150 KNHPDFEIYDVQYTTKVEEMNPTLHAVRKQFKDDCRPMQNLL-FSDCKLAINDMPNHVYDMDWDVVLVDGPSGYFPRAPG  228 (338)
Q Consensus       150 ~~~P~leay~V~Y~T~v~ea~~LL~~~r~~~~~~C~p~~~l~-~S~CkLAL~~LP~evYe~~WDVImVDgP~Gy~peaPG  228 (338)
                      ++||+||+|+|+|+|+++||++||+++|+  +++|+|+|+.+ +|+|||||||||+||||++|||||||||+||+||+||
T Consensus        79 ~~~p~leay~V~Y~t~~~~a~~LL~~~~~--~~~C~p~~~~~~~s~C~Lal~~LP~~vYe~~WDvImVDgP~Gy~~eaPG  156 (225)
T TIGR01627        79 VNPPNTRIYSVKYHTKVRNAYNLLQHARA--NPECRPVMNHQGSSDCKLELRDLPQQVYNTKWDVIVVDGPRGDDLETPG  156 (225)
T ss_pred             hcCCcceEEEEEeehhhhhHHHHHHHhcc--CCcccCCCCccccCcCccccccCCHHHhcccCcEEEEeCCCCCCCCCCc
Confidence            99999999999999999999999998986  59999999655 9999999999999999999999999999999999999


Q ss_pred             CchhHhhHHHHHhhccCCCCcceEEEecCChhHHHHhhhhhccccccccccCceeeEEeCCCCCCCCCcccccCcC
Q 019623          229 RMAPIFTASVLARSKKAGRKKTHVFVHDFNREVERVCSEEFLCEENLVEVVDKLAHFVVEPMAPIEGNEEQSFKFC  304 (338)
Q Consensus       229 RM~aIyTAavmARar~~g~~~TdVfVHDvdR~VE~~~s~EFLC~~nLve~~grL~HF~Ip~~~~~~g~~~~~~~FC  304 (338)
                      ||+||||||||||+|++| ++||||||||||+|||+|||||||++|||+++||||||+||+|      ..++++||
T Consensus       157 RM~aIyTAav~AR~r~~g-~~TdVfVHDvdR~VE~~fs~eFLC~~~lv~~~grL~HF~Ip~~------~~~~~~FC  225 (225)
T TIGR01627       157 RMSSIYTAAVLARKGSSG-STTDVFVHDVHRTVEKWLSWEFLCQENLVEANGTLWHFRIKRQ------SNASRAFC  225 (225)
T ss_pred             chhhHHHHHHHHHhccCC-CCceEEEecCCcHHHHHHHHHhcchHHHHhccCceeeEEecCC------cCCCCCCC
Confidence            999999999999999976 5799999999999999999999999999999999999999998      45567899

This model represents an uncharacterized domain found in both Arabidopsis thaliana (at least 10 copies) and Oryza sativa. Most member proteins have only a short stretch of sequence N-terminal to this domain, but one has a long N-terminal extension that includes a protein kinase domain (pfam00069).

>PF04669 Polysacc_synt_4: Polysaccharide biosynthesis; InterPro: IPR021148 This is a eukaryotic family of uncharacterised proteins

Probab=100.00  E-value=4.8e-86  Score=593.00  Aligned_cols=186  Identities=51%  Similarity=0.885  Sum_probs=106.4

Q ss_pred             HHHHHHHHHHhhcCCC-ccEEEecCCchhhhhhhccCCCcEEEecCChhHHHHhhhcCCCceeEEeEecccccchHHHHH
Q 019623           96 AELTAVADALSRCSPS-CNFLVFGLTHETLLWKSLNFQGHTIFVDESEFLVQSFEKNHPDFEIYDVQYTTKVEEMNPTLH  174 (338)
Q Consensus        96 ~Ei~~~~~vL~~~raP-CNfLVFGLg~dsllW~aLN~gGrTVFLEEd~~~i~~~~~~~P~leay~V~Y~T~v~ea~~LL~  174 (338)
                      .||+.+++||++ ++| |||||||||||||||+++||||||||||||++|+++++++||+|++|+|+|+|++.++++||+
T Consensus         1 ~E~~~a~~~l~~-~~p~cNlLvfgl~~~sl~wt~ln~~GrTvFlee~~~~~~~~~~~fP~l~~~~v~y~t~~~~a~~Ll~   79 (190)
T PF04669_consen    1 IEIAWAAKVLQH-REPYCNLLVFGLGPDSLLWTSLNDGGRTVFLEEDPAWYSSFRKRFPDLEAYHVRYRTKVIDADELLS   79 (190)
T ss_dssp             HHHHHHHHHHHH-HHHHHHHHHHS--TTS--SSTTHHH-----------HHHHHHHH-TTT----SHHHHHB--STTTSS
T ss_pred             CcHHHHHHHHHH-hCCCceEEEEeCCCccccchhcCcCcccchhhHHHHHHHHHHHHCcCCcccCcccccccCCHHHHhC
Confidence            599999999999 667 999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhcCCCCCccccccccccccccccCCCcccccccccEEEEcCCCCCCCCCCCCchhHhhHHHHHhhccCCCCc-ceEE
Q 019623          175 AVRKQFKDDCRPMQNLLFSDCKLAINDMPNHVYDMDWDVVLVDGPSGYFPRAPGRMAPIFTASVLARSKKAGRKK-THVF  253 (338)
Q Consensus       175 ~~r~~~~~~C~p~~~l~~S~CkLAL~~LP~evYe~~WDVImVDgP~Gy~peaPGRM~aIyTAavmARar~~g~~~-TdVf  253 (338)
                      .+|+   ++|+|+|++++|+|||||||||++||+++|||||||||+||+|+|||||+||||||||||+|++|..+ ||||
T Consensus        80 ~~~~---~~C~~~~~~~~s~C~lal~~LP~~vy~~~WDvi~vd~p~g~~~daPGRM~aIytag~LaR~~~~~~~t~t~Vf  156 (190)
T PF04669_consen   80 KARS---PECRPVQNLRFSECKLALNDLPNEVYKEKWDVIFVDAPRGYVPDAPGRMAAIYTAGVLARARASGGYTETDVF  156 (190)
T ss_dssp             HH------------------------------HHHHH-HHHHHHHTTT-S---------TTS-EEEESBTTS-S-TTEEE
T ss_pred             cccc---ccccccccccccccccccccccchhhhhhHHHHHHHcCCCCCCccchhhhhhccHHHHhhccCCCCCCCCEEE
Confidence            9996   89999999999999999999999999999999999999999999999999999999999999876433 6999


Q ss_pred             EecCChhHHHHhhhhhccccccccccCc--eeeE
Q 019623          254 VHDFNREVERVCSEEFLCEENLVEVVDK--LAHF  285 (338)
Q Consensus       254 VHDvdR~VE~~~s~EFLC~~nLve~~gr--L~HF  285 (338)
                      ||||||+|||+||+||||+||+++++|+  ||||
T Consensus       157 Vhdv~R~vE~~~s~eFLc~e~l~~~~G~~~l~hF  190 (190)
T PF04669_consen  157 VHDVDRPVEKWFSEEFLCIEILRNREGRNDLWHF  190 (190)
T ss_dssp             E-HH----------HHHHHHHHHHHTTTTGGG--
T ss_pred             EEcccccccchhHHHHHHHHHHHhCCCchhhccC
Confidence            9999999999999999999999999999  9999

; PDB: 2JYN_A.

>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]

Probab=94.75  E-value=0.2  Score=48.17  Aligned_cols=160  Identities=20%  Similarity=0.247  Sum_probs=113.7

Q ss_pred             CCHHHHHHHHHHHhhcCCCccEEEecCCchhhhhhhccCC--CcEEEecCChhHHHHhhhcCCCce--eEEeEecccccc
Q 019623           93 MTSAELTAVADALSRCSPSCNFLVFGLTHETLLWKSLNFQ--GHTIFVDESEFLVQSFEKNHPDFE--IYDVQYTTKVEE  168 (338)
Q Consensus        93 qt~~Ei~~~~~vL~~~raPCNfLVFGLg~dsllW~aLN~g--GrTVFLEEd~~~i~~~~~~~P~le--ay~V~Y~T~v~e  168 (338)
                      ...-|.-+-...+.+ ..|-+.||-|+|--+.++..+.|.  -|-+..|=|+..|+-.++-.|...  ++|=+-.-.+.+
T Consensus        60 ~~yhEml~h~~~~ah-~~pk~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~D  138 (282)
T COG0421          60 FIYHEMLAHVPLLAH-PNPKRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDD  138 (282)
T ss_pred             HHHHHHHHhchhhhC-CCCCeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEecc
Confidence            445566666666776 667799999999999999999998  699999999999999998888775  443444445567


Q ss_pred             hHHHHHHHHhcCCCCCccccccccccccccccCCCcccccccccEEEEcCCCCCCCCCCCCchhHhhHHHHH---hh-cc
Q 019623          169 MNPTLHAVRKQFKDDCRPMQNLLFSDCKLAINDMPNHVYDMDWDVVLVDGPSGYFPRAPGRMAPIFTASVLA---RS-KK  244 (338)
Q Consensus       169 a~~LL~~~r~~~~~~C~p~~~l~~S~CkLAL~~LP~evYe~~WDVImVDgP~Gy~peaPGRM~aIyTAavmA---Ra-r~  244 (338)
                      +.+.|+.        |.                       -.+|||++|.--   |+.||  .+.||.-..-   |. +.
T Consensus       139 g~~~v~~--------~~-----------------------~~fDvIi~D~td---p~gp~--~~Lft~eFy~~~~~~L~~  182 (282)
T COG0421         139 GVEFLRD--------CE-----------------------EKFDVIIVDSTD---PVGPA--EALFTEEFYEGCRRALKE  182 (282)
T ss_pred             HHHHHHh--------CC-----------------------CcCCEEEEcCCC---CCCcc--cccCCHHHHHHHHHhcCC
Confidence            7776652        11                       169999999766   44443  4566665443   33 22


Q ss_pred             CCCCcce---EEEe-----cCChhHHHHhhhhhccccccccccCceeeEEeCC
Q 019623          245 AGRKKTH---VFVH-----DFNREVERVCSEEFLCEENLVEVVDKLAHFVVEP  289 (338)
Q Consensus       245 ~g~~~Td---VfVH-----DvdR~VE~~~s~EFLC~~nLve~~grL~HF~Ip~  289 (338)
                      +|--.+-   .|.|     +..|.++++|+.-=.+.-.+-.-.+..|-|.+-+
T Consensus       183 ~Gi~v~q~~~~~~~~~~~~~~~~~~~~vf~~~~~~~~~ipt~~~g~~~f~~~s  235 (282)
T COG0421         183 DGIFVAQAGSPFLQDEEIALAYRNVSRVFSIVPPYVAPIPTYPSGFWGFIVAS  235 (282)
T ss_pred             CcEEEEecCCcccchHHHHHHHHHHHhhccccccceeccceecCCceEEEEee
Confidence            3321121   4444     6789999999988777777777788889999944

>PLN02823 spermine synthase

Probab=94.04  E-value=0.42  Score=46.95  Aligned_cols=98  Identities=16%  Similarity=0.244  Sum_probs=65.1

Q ss_pred             CCCccEEEecCCchhhhhhhccCC--CcEEEecCChhHHHHhhhcCCCce-eE-EeEecccccchHHHHHHHHhcCCCCC
Q 019623          109 SPSCNFLVFGLTHETLLWKSLNFQ--GHTIFVDESEFLVQSFEKNHPDFE-IY-DVQYTTKVEEMNPTLHAVRKQFKDDC  184 (338)
Q Consensus       109 raPCNfLVFGLg~dsllW~aLN~g--GrTVFLEEd~~~i~~~~~~~P~le-ay-~V~Y~T~v~ea~~LL~~~r~~~~~~C  184 (338)
                      ..|.+.||.|+|--++....+.|.  .+-+.+|=|+.-++-+++-+|... .+ +=+-+-.+.++.+.|+   ..     
T Consensus       102 ~~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~---~~-----  173 (336)
T PLN02823        102 PNPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELE---KR-----  173 (336)
T ss_pred             CCCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHh---hC-----
Confidence            579999999999888877777764  467999999999999987766321 11 1122233456666553   10     


Q ss_pred             ccccccccccccccccCCCcccccccccEEEEcCCCCCCCCCCCCchhHhhHHHHH
Q 019623          185 RPMQNLLFSDCKLAINDMPNHVYDMDWDVVLVDGPSGYFPRAPGRMAPIFTASVLA  240 (338)
Q Consensus       185 ~p~~~l~~S~CkLAL~~LP~evYe~~WDVImVDgP~Gy~peaPGRM~aIyTAavmA  240 (338)
                                             +-.||||++|.+.   |...|-....||.-.+.
T Consensus       174 -----------------------~~~yDvIi~D~~d---p~~~~~~~~Lyt~eF~~  203 (336)
T PLN02823        174 -----------------------DEKFDVIIGDLAD---PVEGGPCYQLYTKSFYE  203 (336)
T ss_pred             -----------------------CCCccEEEecCCC---ccccCcchhhccHHHHH
Confidence                                   1259999999865   43333345688866544

>PLN02476 O-methyltransferase

Probab=93.73  E-value=0.61  Score=45.00  Aligned_cols=119  Identities=13%  Similarity=0.081  Sum_probs=75.5

Q ss_pred             cHHHHHHHHHhhccC--CCCCCHHHHHHHHHHHhhcCCCccEEEecCCch-hhhhhhc--cCCCcEEEecCChhHHHHhh
Q 019623           75 SSIITAALLHYTLTS--NSTMTSAELTAVADALSRCSPSCNFLVFGLTHE-TLLWKSL--NFQGHTIFVDESEFLVQSFE  149 (338)
Q Consensus        75 p~~v~~ALvHYAt~s--n~tqt~~Ei~~~~~vL~~~raPCNfLVFGLg~d-sllW~aL--N~gGrTVFLEEd~~~i~~~~  149 (338)
                      ++++++.|.+||...  +..+...|.......|.+...|=++|=.|-+-. |.+|.+.  ..+|+-+=+|-|+++++.++
T Consensus        81 ~~~~L~~l~e~a~~~~~~~~~v~~~~g~lL~~L~~~~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar  160 (278)
T PLN02476         81 EPKILRQLREETSKMRGSQMQVSPDQAQLLAMLVQILGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAK  160 (278)
T ss_pred             CCHHHHHHHHHHHhccCCccccCHHHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHH
Confidence            445677777777633  122445555555555555588999999976332 3445543  56899999999999988777


Q ss_pred             hcC--CCceeEEeEecccccchHHHHHHHHhcCCCCCccccccccccccccccCCCcccccccccEEEEcCCCCC
Q 019623          150 KNH--PDFEIYDVQYTTKVEEMNPTLHAVRKQFKDDCRPMQNLLFSDCKLAINDMPNHVYDMDWDVVLVDGPSGY  222 (338)
Q Consensus       150 ~~~--P~leay~V~Y~T~v~ea~~LL~~~r~~~~~~C~p~~~l~~S~CkLAL~~LP~evYe~~WDVImVDgP~Gy  222 (338)
                      +..  -+++ ..|..  ...+|.+.|....++ .                         .+-.+|+|+|||+++-
T Consensus       161 ~n~~~aGl~-~~I~l--i~GdA~e~L~~l~~~-~-------------------------~~~~FD~VFIDa~K~~  206 (278)
T PLN02476        161 RYYELAGVS-HKVNV--KHGLAAESLKSMIQN-G-------------------------EGSSYDFAFVDADKRM  206 (278)
T ss_pred             HHHHHcCCC-CcEEE--EEcCHHHHHHHHHhc-c-------------------------cCCCCCEEEECCCHHH
Confidence            543  3443 33433  346788888755431 0                         0234899999999853

>PLN02781 Probable caffeoyl-CoA O-methyltransferase

Probab=93.51  E-value=0.44  Score=43.76  Aligned_cols=117  Identities=14%  Similarity=0.074  Sum_probs=75.2

Q ss_pred             HHHHHHHHHhhccC--CCC--CCHHHHHHHHHHHhhcCCCccEEEecC--Cchhhhhhh-ccCCCcEEEecCChhHHHHh
Q 019623           76 SIITAALLHYTLTS--NST--MTSAELTAVADALSRCSPSCNFLVFGL--THETLLWKS-LNFQGHTIFVDESEFLVQSF  148 (338)
Q Consensus        76 ~~v~~ALvHYAt~s--n~t--qt~~Ei~~~~~vL~~~raPCNfLVFGL--g~dsllW~a-LN~gGrTVFLEEd~~~i~~~  148 (338)
                      .++++.|.+||...  ...  +...+.......|.+...|-++|-.|-  |..++.+++ +..+|+-+.+|-|+++++.+
T Consensus        30 ~~~l~~~~~~a~~~~~~~~~~~v~~~~g~~L~~l~~~~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A  109 (234)
T PLN02781         30 HELLKELREATVQKYGNLSEMEVPVDEGLFLSMLVKIMNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVG  109 (234)
T ss_pred             CHHHHHHHHHHHhccccCcccccCHHHHHHHHHHHHHhCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHH
Confidence            45788888888633  112  444455555555555578999999985  554455544 34579999999999999888


Q ss_pred             hhcCC--CceeEEeEecccccchHHHHHHHHhcCCCCCccccccccccccccccCCCcccccccccEEEEcCCCC
Q 019623          149 EKNHP--DFEIYDVQYTTKVEEMNPTLHAVRKQFKDDCRPMQNLLFSDCKLAINDMPNHVYDMDWDVVLVDGPSG  221 (338)
Q Consensus       149 ~~~~P--~leay~V~Y~T~v~ea~~LL~~~r~~~~~~C~p~~~l~~S~CkLAL~~LP~evYe~~WDVImVDgP~G  221 (338)
                      ++..-  +++ ..|  +-...+|.+.|....++  ++                        +-.+|+|++|+++.
T Consensus       110 ~~n~~~~gl~-~~i--~~~~gda~~~L~~l~~~--~~------------------------~~~fD~VfiDa~k~  155 (234)
T PLN02781        110 LEFIKKAGVD-HKI--NFIQSDALSALDQLLNN--DP------------------------KPEFDFAFVDADKP  155 (234)
T ss_pred             HHHHHHcCCC-CcE--EEEEccHHHHHHHHHhC--CC------------------------CCCCCEEEECCCHH
Confidence            76532  332 223  33456777777655432  00                        12689999999873

>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases

Probab=92.84  E-value=0.75  Score=42.08  Aligned_cols=144  Identities=13%  Similarity=0.159  Sum_probs=91.3

Q ss_pred             cHHHHHHHHHhhccCC-CC--CCHHHHHHHHHHHhhcCCCccEEEecC--Cchhhhhh-hccCCCcEEEecCChhHHHHh
Q 019623           75 SSIITAALLHYTLTSN-ST--MTSAELTAVADALSRCSPSCNFLVFGL--THETLLWK-SLNFQGHTIFVDESEFLVQSF  148 (338)
Q Consensus        75 p~~v~~ALvHYAt~sn-~t--qt~~Ei~~~~~vL~~~raPCNfLVFGL--g~dsllW~-aLN~gGrTVFLEEd~~~i~~~  148 (338)
                      .+++++.|-+++.... ..  +...+...+...|.+...|-|.|-+|-  |.-++.|+ ++-.+|+-+=+|-|+++++.+
T Consensus         7 ~~~~l~~l~~~t~~~~~~~~~~i~~~~g~lL~~l~~~~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A   86 (205)
T PF01596_consen    7 EPELLKELREFTRENQGLPQMSISPETGQLLQMLVRLTRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIA   86 (205)
T ss_dssp             STHHHHHHHHHHHCTTTTGGGSHHHHHHHHHHHHHHHHT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHH
T ss_pred             CCHHHHHHHHHHHhCcCCCCCccCHHHHHHHHHHHHhcCCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHH
Confidence            5578899999997433 12  333444445555555577999999975  77777777 566789999999999998877


Q ss_pred             hhcC--CCceeEEeEecccccchHHHHHHHHhcCCCCCccccccccccccccccCCCcccccccccEEEEcCCCCCCCCC
Q 019623          149 EKNH--PDFEIYDVQYTTKVEEMNPTLHAVRKQFKDDCRPMQNLLFSDCKLAINDMPNHVYDMDWDVVLVDGPSGYFPRA  226 (338)
Q Consensus       149 ~~~~--P~leay~V~Y~T~v~ea~~LL~~~r~~~~~~C~p~~~l~~S~CkLAL~~LP~evYe~~WDVImVDgP~Gy~pea  226 (338)
                      ++..  -+++ .+|++  ...+|.+.|.....+ .                     +    +-.+|+|.|||.++-++  
T Consensus        87 ~~~~~~ag~~-~~I~~--~~gda~~~l~~l~~~-~---------------------~----~~~fD~VFiDa~K~~y~--  135 (205)
T PF01596_consen   87 RENFRKAGLD-DRIEV--IEGDALEVLPELAND-G---------------------E----EGQFDFVFIDADKRNYL--  135 (205)
T ss_dssp             HHHHHHTTGG-GGEEE--EES-HHHHHHHHHHT-T---------------------T----TTSEEEEEEESTGGGHH--
T ss_pred             HHHHHhcCCC-CcEEE--EEeccHhhHHHHHhc-c---------------------C----CCceeEEEEcccccchh--
Confidence            7432  2332 23333  347888888766642 0                     0    34699999999886443  


Q ss_pred             CCCchhHhhHHHHHhhccCCCCcceEEEecCCh
Q 019623          227 PGRMAPIFTASVLARSKKAGRKKTHVFVHDFNR  259 (338)
Q Consensus       227 PGRM~aIyTAavmARar~~g~~~TdVfVHDvdR  259 (338)
                           ..|-.+ +..-|++|    =+++.++-.
T Consensus       136 -----~y~~~~-~~ll~~gg----vii~DN~l~  158 (205)
T PF01596_consen  136 -----EYFEKA-LPLLRPGG----VIIADNVLW  158 (205)
T ss_dssp             -----HHHHHH-HHHEEEEE----EEEEETTTG
T ss_pred             -----hHHHHH-hhhccCCe----EEEEccccc
Confidence                 445443 34445443    466666654

The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....

>PRK01581 speE spermidine synthase; Validated

Probab=92.21  E-value=1.2  Score=44.96  Aligned_cols=142  Identities=15%  Similarity=0.197  Sum_probs=83.9

Q ss_pred             cCCCccEEEecCCchhhhhhhccCC--CcEEEecCChhHHHHhhhcCCCce-----eE-EeEecccccchHHHHHHHHhc
Q 019623          108 CSPSCNFLVFGLTHETLLWKSLNFQ--GHTIFVDESEFLVQSFEKNHPDFE-----IY-DVQYTTKVEEMNPTLHAVRKQ  179 (338)
Q Consensus       108 ~raPCNfLVFGLg~dsllW~aLN~g--GrTVFLEEd~~~i~~~~~~~P~le-----ay-~V~Y~T~v~ea~~LL~~~r~~  179 (338)
                      ...|-+.||.|.|--..+=..+-+.  ++-+-+|=|+.-++-+++ +|.+.     ++ +=+-+-.+.++.+.|..    
T Consensus       148 h~~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~-~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~----  222 (374)
T PRK01581        148 VIDPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARN-VPELVSLNKSAFFDNRVNVHVCDAKEFLSS----  222 (374)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHh-ccccchhccccCCCCceEEEECcHHHHHHh----
Confidence            3678999999999777666666654  688889999999988885 44442     11 11222233555554431    


Q ss_pred             CCCCCccccccccccccccccCCCcccccccccEEEEcCCCCCCCCCCCCchhHhhHHHHHhhcc---CCCCcceEEE-e
Q 019623          180 FKDDCRPMQNLLFSDCKLAINDMPNHVYDMDWDVVLVDGPSGYFPRAPGRMAPIFTASVLARSKK---AGRKKTHVFV-H  255 (338)
Q Consensus       180 ~~~~C~p~~~l~~S~CkLAL~~LP~evYe~~WDVImVDgP~Gy~peaPGRM~aIyTAavmARar~---~g~~~TdVfV-H  255 (338)
                                            .+     -++|||++|.|....+    .....||...+...++   +| |   ||| .
T Consensus       223 ----------------------~~-----~~YDVIIvDl~DP~~~----~~~~LyT~EFy~~~~~~LkPg-G---V~V~Q  267 (374)
T PRK01581        223 ----------------------PS-----SLYDVIIIDFPDPATE----LLSTLYTSELFARIATFLTED-G---AFVCQ  267 (374)
T ss_pred             ----------------------cC-----CCccEEEEcCCCcccc----chhhhhHHHHHHHHHHhcCCC-c---EEEEe
Confidence                                  01     1699999998753322    2477888776555433   33 3   232 1


Q ss_pred             --------cCChhHHHHhhhhhccccccc---cccCceeeEEeCC
Q 019623          256 --------DFNREVERVCSEEFLCEENLV---EVVDKLAHFVVEP  289 (338)
Q Consensus       256 --------DvdR~VE~~~s~EFLC~~nLv---e~~grL~HF~Ip~  289 (338)
                              ++-..+-+.+...|+--....   ..-|.+|=|.|.+
T Consensus       268 s~sp~~~~~~~~~i~~tL~~af~~v~~y~t~vPsyg~~WgF~~as  312 (374)
T PRK01581        268 SNSPADAPLVYWSIGNTIEHAGLTVKSYHTIVPSFGTDWGFHIAA  312 (374)
T ss_pred             cCChhhhHHHHHHHHHHHHHhCCceEEEEEecCCCCCceEEEEEe
Confidence                    111234566666676544322   2346668888854

>TIGR00417 speE spermidine synthase

Probab=91.65  E-value=1.1  Score=41.62  Aligned_cols=47  Identities=21%  Similarity=0.258  Sum_probs=38.4

Q ss_pred             CCCccEEEecCCchhhhhhhccCC--CcEEEecCChhHHHHhhhcCCCc
Q 019623          109 SPSCNFLVFGLTHETLLWKSLNFQ--GHTIFVDESEFLVQSFEKNHPDF  155 (338)
Q Consensus       109 raPCNfLVFGLg~dsllW~aLN~g--GrTVFLEEd~~~i~~~~~~~P~l  155 (338)
                      +.|-+.|+.|.|--.+....+.+.  .+.+.+|-|+..++.+++..|.+
T Consensus        71 ~~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~  119 (270)
T TIGR00417        71 PNPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSL  119 (270)
T ss_pred             CCCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhh
Confidence            568899999999988777777775  57899999999999888766543

the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.

>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2

Probab=89.48  E-value=0.72  Score=42.92  Aligned_cols=104  Identities=18%  Similarity=0.228  Sum_probs=64.9

Q ss_pred             HHHhhcCCCccEEEecCCchhhhhhhccCC--CcEEEecCChhHHHHhhhcCCCceeE--EeEecccccchHHHHHHHHh
Q 019623          103 DALSRCSPSCNFLVFGLTHETLLWKSLNFQ--GHTIFVDESEFLVQSFEKNHPDFEIY--DVQYTTKVEEMNPTLHAVRK  178 (338)
Q Consensus       103 ~vL~~~raPCNfLVFGLg~dsllW~aLN~g--GrTVFLEEd~~~i~~~~~~~P~leay--~V~Y~T~v~ea~~LL~~~r~  178 (338)
                      -++.. ..|-|.||.|+|--+..-..+.|.  .+...+|-|+.-++-.++-+|....-  +=+.+-...++.+.|+    
T Consensus        70 ~~~~~-~~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~----  144 (246)
T PF01564_consen   70 PLLLH-PNPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLK----  144 (246)
T ss_dssp             HHHHS-SST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHH----
T ss_pred             HhhcC-CCcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHH----
Confidence            34444 579999999999999888888886  67889999999888777554432111  1111122345555554    


Q ss_pred             cCCCCCccccccccccccccccCCCcccccccccEEEEcCCCCCCCCCCCCchhHhhHHHHHhh
Q 019623          179 QFKDDCRPMQNLLFSDCKLAINDMPNHVYDMDWDVVLVDGPSGYFPRAPGRMAPIFTASVLARS  242 (338)
Q Consensus       179 ~~~~~C~p~~~l~~S~CkLAL~~LP~evYe~~WDVImVDgP~Gy~peaPGRM~aIyTAavmARa  242 (338)
                                            .-+.+    .+|||++|.+.   |..|+-.  .||.-.+...
T Consensus       145 ----------------------~~~~~----~yDvIi~D~~d---p~~~~~~--l~t~ef~~~~  177 (246)
T PF01564_consen  145 ----------------------ETQEE----KYDVIIVDLTD---PDGPAPN--LFTREFYQLC  177 (246)
T ss_dssp             ----------------------TSSST-----EEEEEEESSS---TTSCGGG--GSSHHHHHHH
T ss_pred             ----------------------hccCC----cccEEEEeCCC---CCCCccc--ccCHHHHHHH
Confidence                                  22222    79999999987   4444433  7776655444

5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....

>PLN02366 spermidine synthase

Probab=89.09  E-value=3.2  Score=40.30  Aligned_cols=47  Identities=15%  Similarity=0.184  Sum_probs=36.7

Q ss_pred             CCCccEEEecCCchhhhhhhccCC--CcEEEecCChhHHHHhhhcCCCc
Q 019623          109 SPSCNFLVFGLTHETLLWKSLNFQ--GHTIFVDESEFLVQSFEKNHPDF  155 (338)
Q Consensus       109 raPCNfLVFGLg~dsllW~aLN~g--GrTVFLEEd~~~i~~~~~~~P~l  155 (338)
                      ..|-+.||.|.|.-.+.-..+.|.  .+-+.+|=|+.-|+-.++.+|.+
T Consensus        90 ~~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~  138 (308)
T PLN02366         90 PNPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDL  138 (308)
T ss_pred             CCCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhh
Confidence            679999999999887776666663  46678898999888888776653

>PRK00811 spermidine synthase; Provisional

Probab=89.05  E-value=2  Score=40.52  Aligned_cols=47  Identities=19%  Similarity=0.236  Sum_probs=39.3

Q ss_pred             CCCccEEEecCCchhhhhhhccC-C-CcEEEecCChhHHHHhhhcCCCc
Q 019623          109 SPSCNFLVFGLTHETLLWKSLNF-Q-GHTIFVDESEFLVQSFEKNHPDF  155 (338)
Q Consensus       109 raPCNfLVFGLg~dsllW~aLN~-g-GrTVFLEEd~~~i~~~~~~~P~l  155 (338)
                      ..|-+.||.|.|--...-..+.+ + .+-+.+|=|+.-++.+++..|.+
T Consensus        75 ~~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~  123 (283)
T PRK00811         75 PNPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEI  123 (283)
T ss_pred             CCCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHh
Confidence            57999999999998888877887 3 47899999999999988776643

>PLN02589 caffeoyl-CoA O-methyltransferase

Probab=86.91  E-value=3.7  Score=38.86  Aligned_cols=120  Identities=13%  Similarity=0.080  Sum_probs=78.1

Q ss_pred             HHHHHHHHHhhccCCCC--C-CHHHHHHHHHHHhhcCCCccEEEecC--Cchhhhhh-hccCCCcEEEecCChhHHHHhh
Q 019623           76 SIITAALLHYTLTSNST--M-TSAELTAVADALSRCSPSCNFLVFGL--THETLLWK-SLNFQGHTIFVDESEFLVQSFE  149 (338)
Q Consensus        76 ~~v~~ALvHYAt~sn~t--q-t~~Ei~~~~~vL~~~raPCNfLVFGL--g~dsllW~-aLN~gGrTVFLEEd~~~i~~~~  149 (338)
                      .++++.|.++|.....+  | +.++-+.+..+++ ...|-+.|-+|-  |.-++.++ ++..+|+-+=+|=|+.+++.++
T Consensus        43 ~~~L~~l~~~a~~~~~~~~~~~~~~g~lL~~l~~-~~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar  121 (247)
T PLN02589         43 PESMKELRELTAKHPWNIMTTSADEGQFLNMLLK-LINAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGL  121 (247)
T ss_pred             CHHHHHHHHHHHhcCCCCCccCHHHHHHHHHHHH-HhCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHH
Confidence            35688889998744333  3 3555555555555 477999999985  55555443 3456899999999999988776


Q ss_pred             hcC--CCceeEEeEecccccchHHHHHHHHhcCCCCCccccccccccccccccCCCcccccccccEEEEcCCCCCCC
Q 019623          150 KNH--PDFEIYDVQYTTKVEEMNPTLHAVRKQFKDDCRPMQNLLFSDCKLAINDMPNHVYDMDWDVVLVDGPSGYFP  224 (338)
Q Consensus       150 ~~~--P~leay~V~Y~T~v~ea~~LL~~~r~~~~~~C~p~~~l~~S~CkLAL~~LP~evYe~~WDVImVDgP~Gy~p  224 (338)
                      +..  -++. ..|.+  ...+|.+.|....++                         .-|+-.+|+|.|||-++-++
T Consensus       122 ~~~~~ag~~-~~I~~--~~G~a~e~L~~l~~~-------------------------~~~~~~fD~iFiDadK~~Y~  170 (247)
T PLN02589        122 PVIQKAGVA-HKIDF--REGPALPVLDQMIED-------------------------GKYHGTFDFIFVDADKDNYI  170 (247)
T ss_pred             HHHHHCCCC-CceEE--EeccHHHHHHHHHhc-------------------------cccCCcccEEEecCCHHHhH
Confidence            443  2332 45543  346777777755531                         01234599999998875544

>PRK04457 spermidine synthase; Provisional

Probab=86.03  E-value=8.1  Score=36.21  Aligned_cols=44  Identities=11%  Similarity=0.063  Sum_probs=36.8

Q ss_pred             CCCccEEEecCCchhhh--hhhccCCCcEEEecCChhHHHHhhhcC
Q 019623          109 SPSCNFLVFGLTHETLL--WKSLNFQGHTIFVDESEFLVQSFEKNH  152 (338)
Q Consensus       109 raPCNfLVFGLg~dsll--W~aLN~gGrTVFLEEd~~~i~~~~~~~  152 (338)
                      ..|-++|+.|+|.-++.  |....++.+-+-+|=||..++.+++.+
T Consensus        65 ~~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f  110 (262)
T PRK04457         65 PRPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHF  110 (262)
T ss_pred             CCCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHc
Confidence            46889999999888764  666777889999999999999888764

>PRK03612 spermidine synthase; Provisional

Probab=83.82  E-value=5.6  Score=41.00  Aligned_cols=42  Identities=17%  Similarity=0.193  Sum_probs=36.0

Q ss_pred             CCCccEEEecCCchhhhhhhccCC--CcEEEecCChhHHHHhhh
Q 019623          109 SPSCNFLVFGLTHETLLWKSLNFQ--GHTIFVDESEFLVQSFEK  150 (338)
Q Consensus       109 raPCNfLVFGLg~dsllW~aLN~g--GrTVFLEEd~~~i~~~~~  150 (338)
                      +.|-+.|+.|.|--...-..+.|+  .+-+.+|=|+.-++..++
T Consensus       296 ~~~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~~vi~~ar~  339 (521)
T PRK03612        296 ARPRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDPAMTELART  339 (521)
T ss_pred             CCCCeEEEEcCCccHHHHHHHhCCCcCeEEEEECCHHHHHHHHh
Confidence            679999999999888776667775  489999999999999887

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	338
3cvo_A	202	Methyltransferase-like protein of unknown functio;	1e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-04

>3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3} Length = 202

 Score = 41.7 bits (97), Expect = 1e-04
 Identities = 34/212 (16%), Positives = 61/212 (28%), Gaps = 28/212 (13%)

Query: 92  TMTSAELTAVADALSRCSPSCNFLVFGLTHETLLWKSLNFQGHTIFVDESEFLVQSFEKN 151
           TM  AE  A+  A          L +G    T++  +     H   V+      +  +  
Sbjct: 15  TMPPAEAEALRMAYEEAE---VILEYGSGGSTVVA-AELPGKHVTSVESDRAWARMMKAW 70

Query: 152 HPDFEIYDVQYTTKVEEMNPTLHAVRKQFKDDCRPMQNLLFSDCKLAINDMPNHVYDMDW 211
                  +             +        D   P+ +  +         +         
Sbjct: 71  LAANPPAEGTEV-------NIVWTDIGPTGDWGHPVSDAKWRSYPDYPLAVWRTEGFRHP 123

Query: 212 DVVLVDGPSGYFPRAPGRMAPIFTASVLARSKKAGRKKTHVFVHDFNREVERVCSEEFLC 271
           DVVLVDG          R+      +          +   +   D+++   +   EEFL 
Sbjct: 124 DVVLVDGRF--------RVGCALATAFSIT------RPVTLLFDDYSQRRWQHQVEEFL- 168

Query: 272 EENLVEVVDKLAHFVVEPMAPIEGNEEQSFKF 303
                 ++ +LA F VEP     G+  Q  + 
Sbjct: 169 --GAPLMIGRLAAFQVEPQPIPPGSLMQLIRT 198

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 41.4 bits (96), Expect = 4e-04
 Identities = 36/272 (13%), Positives = 75/272 (27%), Gaps = 92/272 (33%)

Query: 93  MTSAELTAVADALS---RCSPSCNFLVFGLTH---ETLLWKSLNF----------QGHTI 136
           +T+     V D LS       S +     LT    ++LL K L+             +  
Sbjct: 270 LTTRF-KQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPR 328

Query: 137 FVDESEFLVQSFEKNHPD-FEIYDVQYTTK---------VEEMNPTLHAVRKQFKDDCRP 186
            +     ++    ++    ++ +                +  + P  +  RK F      
Sbjct: 329 RLS----IIAESIRDGLATWDNWK-HVNCDKLTTIIESSLNVLEPAEY--RKMFDR---- 377

Query: 187 MQNLLFSDCKLAI----NDMPNHVYDMDWDVVLVDGPSGYFPRAPGRMAPIFTASVLARS 242
                     L++      +P  +  + W  V+              +  +   S++ + 
Sbjct: 378 ----------LSVFPPSAHIPTILLSLIWFDVIKSDVMVV-------VNKLHKYSLVEKQ 420

Query: 243 KKAGRKKTHVFVHDFNREVERVCSEEFLCEENLVEVVDKLAHFVVEPMAPIEGNEEQSFK 302
            K       + +     E++     E+    ++V+  +    F                 
Sbjct: 421 PKEST----ISIPSIYLELKVKLENEYALHRSIVDHYNIPKTF----------------- 459

Query: 303 FCKSSSPSSSLSSPSSSDDDDY-HSLIEDGHH 333
                  S  L  P     D Y +S I  GHH
Sbjct: 460 ------DSDDLIPPY---LDQYFYSHI--GHH 480

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	338
3cvo_A	202	Methyltransferase-like protein of unknown functio;	97.03
3c6k_A	381	Spermine synthase; spermidine aminopropyltransfera	93.63
2qfm_A	364	Spermine synthase; spermidine aminopropyltransfera	92.94
3o4f_A	294	Spermidine synthase; aminopropyltransferase, polya	87.07
1iy9_A	275	Spermidine synthase; rossmann fold, structural gen	83.86
3gjy_A	317	Spermidine synthase; APC62791, structural genomics	83.56
2i7c_A	283	Spermidine synthase; transferase, structural genom	82.99
2b2c_A	314	Spermidine synthase; beta-alpha, transferase; 2.50	81.27

>3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3}

Probab=97.03  E-value=0.0013  Score=58.54  Aligned_cols=162  Identities=23%  Similarity=0.236  Sum_probs=92.7

Q ss_pred             CCHHHHHHHHHHHhhcCCCccEEEecCCchhhhhhhccCCCcEEEecCChhHHHHhhhcCC--Cc-eeEEeEecccccch
Q 019623           93 MTSAELTAVADALSRCSPSCNFLVFGLTHETLLWKSLNFQGHTIFVDESEFLVQSFEKNHP--DF-EIYDVQYTTKVEEM  169 (338)
Q Consensus        93 qt~~Ei~~~~~vL~~~raPCNfLVFGLg~dsllW~aLN~gGrTVFLEEd~~~i~~~~~~~P--~l-eay~V~Y~T~v~ea  169 (338)
                      ++.++.+.+...+++   |-|.|-+|-|. |-+|.|...+|+-+=+|-|++|++.+++..-  ++ +...|.+..  .+|
T Consensus        16 v~~~~~~~L~~~l~~---a~~VLEiGtGy-STl~lA~~~~g~VvtvE~d~~~~~~ar~~l~~~g~~~~~~I~~~~--gda   89 (202)
T 3cvo_A           16 MPPAEAEALRMAYEE---AEVILEYGSGG-STVVAAELPGKHVTSVESDRAWARMMKAWLAANPPAEGTEVNIVW--TDI   89 (202)
T ss_dssp             SCHHHHHHHHHHHHH---CSEEEEESCSH-HHHHHHTSTTCEEEEEESCHHHHHHHHHHHHHSCCCTTCEEEEEE--CCC
T ss_pred             CCHHHHHHHHHHhhC---CCEEEEECchH-HHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCCCCCCceEEEE--eCc
Confidence            889999999886654   78999999997 6666665558999999999999998875322  11 123343331  111


Q ss_pred             HHHHHHHHhcCCCCCccccccccccccccccCCCcccc----cccccEEEEcCCCCCCCCCCCCchhHhhHHHHHhhccC
Q 019623          170 NPTLHAVRKQFKDDCRPMQNLLFSDCKLAINDMPNHVY----DMDWDVVLVDGPSGYFPRAPGRMAPIFTASVLARSKKA  245 (338)
Q Consensus       170 ~~LL~~~r~~~~~~C~p~~~l~~S~CkLAL~~LP~evY----e~~WDVImVDgP~Gy~peaPGRM~aIyTAavmARar~~  245 (338)
                      .+.+        .-..|+....+    -.+..++..+.    +-.+|+|+|||..+        ....+-  .+-+-|.+
T Consensus        90 ~~~~--------~wg~p~~~~~~----~~l~~~~~~i~~~~~~~~fDlIfIDg~k~--------~~~~~~--~l~~l~~G  147 (202)
T 3cvo_A           90 GPTG--------DWGHPVSDAKW----RSYPDYPLAVWRTEGFRHPDVVLVDGRFR--------VGCALA--TAFSITRP  147 (202)
T ss_dssp             SSBC--------GGGCBSSSTTG----GGTTHHHHGGGGCTTCCCCSEEEECSSSH--------HHHHHH--HHHHCSSC
T ss_pred             hhhh--------cccccccchhh----hhHHHHhhhhhccccCCCCCEEEEeCCCc--------hhHHHH--HHHhcCCC
Confidence            1100        01222221110    01111111111    24599999999752        222222  33444444


Q ss_pred             CCCcceEEEecC-ChhHHHHhhhhhccccccccccCceeeEEeCCC
Q 019623          246 GRKKTHVFVHDF-NREVERVCSEEFLCEENLVEVVDKLAHFVVEPM  290 (338)
Q Consensus       246 g~~~TdVfVHDv-dR~VE~~~s~EFLC~~nLve~~grL~HF~Ip~~  290 (338)
                      |    =++++|| .|.-+..- .+||   .+++..||+..|+|.+.
T Consensus       148 G----~Iv~DNv~~r~~y~~v-~~~~---~~~~~~~~~a~f~~~p~  185 (202)
T 3cvo_A          148 V----TLLFDDYSQRRWQHQV-EEFL---GAPLMIGRLAAFQVEPQ  185 (202)
T ss_dssp             E----EEEETTGGGCSSGGGG-HHHH---CCCEEETTEEEEEECCC
T ss_pred             e----EEEEeCCcCCcchHHH-HHHH---hHHhhcCceEEEEeCCC
Confidence            3    4678885 55433222 3444   35678999999999554

>3c6k_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC, phosphoprotein; HET: SPD MTA; 1.95A {Homo sapiens} PDB: 3c6m_A*

Probab=93.63  E-value=0.31  Score=47.59  Aligned_cols=148  Identities=17%  Similarity=0.162  Sum_probs=92.6

Q ss_pred             CCCccEEEecCCchhhhhhhccCC-CcEEEecCChhHHHHhhhcCCCcee--EE----eEecccccchHHHHHHHHhcCC
Q 019623          109 SPSCNFLVFGLTHETLLWKSLNFQ-GHTIFVDESEFLVQSFEKNHPDFEI--YD----VQYTTKVEEMNPTLHAVRKQFK  181 (338)
Q Consensus       109 raPCNfLVFGLg~dsllW~aLN~g-GrTVFLEEd~~~i~~~~~~~P~lea--y~----V~Y~T~v~ea~~LL~~~r~~~~  181 (338)
                      .+|-|.||.|+|--..+-..+.|. .+...+|=|+.-|+-.++-+|.+-.  ++    =+.+.-+.+|.+-|+.+.++  
T Consensus       204 ~~pkrVLIIGgGdG~~~revlkh~~~~V~~VEIDp~VVe~ar~yfp~~~~~~~d~pr~~rv~vii~Da~~fl~~~~~~--  281 (381)
T 3c6k_A          204 YTGKDVLILGGGDGGILCEIVKLKPKMVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIEDCIPVLKRYAKE--  281 (381)
T ss_dssp             CTTCEEEEEECTTCHHHHHHHTTCCSEEEEEESCHHHHHHHHHHCCC----CCSSSEETTEEEEESCHHHHHHHHHHH--
T ss_pred             CCCCeEEEECCCcHHHHHHHHhcCCceeEEEccCHHHHHHHHhhchhhhhhhhccccccceeeehHHHHHHHHhhhhc--
Confidence            457899999999999888888764 4677899999999988887776421  11    12334457888888766542  


Q ss_pred             CCCccccccccccccccccCCCcccccccccEEEEcCCCCCCCCCCCCc-hhHhhHHHHHhh----ccCCCCcceEEE--
Q 019623          182 DDCRPMQNLLFSDCKLAINDMPNHVYDMDWDVVLVDGPSGYFPRAPGRM-APIFTASVLARS----KKAGRKKTHVFV--  254 (338)
Q Consensus       182 ~~C~p~~~l~~S~CkLAL~~LP~evYe~~WDVImVDgP~Gy~peaPGRM-~aIyTAavmARa----r~~g~~~TdVfV--  254 (338)
                                                .-+||||++|.+.+.....|-.. ...||.-.+...    +.+|     |||  
T Consensus       282 --------------------------~~~yDvIIvDl~D~~~s~~p~g~a~~Lft~eFy~~~~~~L~p~G-----Vlv~Q  330 (381)
T 3c6k_A          282 --------------------------GREFDYVINDLTAVPISTSPEEDSTWEFLRLILDLSMKVLKQDG-----KYFTQ  330 (381)
T ss_dssp             --------------------------TCCEEEEEEECCSSCCCCC----CHHHHHHHHHHHHHHTEEEEE-----EEEEE
T ss_pred             --------------------------cCceeEEEECCCCCcccCcccCcchHHHHHHHHHHHHHhcCCCC-----EEEEe
Confidence                                      12599999998875544455444 467887654433    2233     444  


Q ss_pred             ------ecCChhHHHHhhhhhcccc---cc--ccccCceeeEEeCC
Q 019623          255 ------HDFNREVERVCSEEFLCEE---NL--VEVVDKLAHFVVEP  289 (338)
Q Consensus       255 ------HDvdR~VE~~~s~EFLC~~---nL--ve~~grL~HF~Ip~  289 (338)
                            ++..+.+++.+.+.|---.   +.  |-+-+..|=|.+.+
T Consensus       331 ~~s~~~~~~~~~i~~tl~~vF~~v~~~~~~~~VPSy~~~W~F~~aS  376 (381)
T 3c6k_A          331 GNCVNLTEALSLYEEQLGRLYCPVEFSKEIVCVPSYLELWVFYTVW  376 (381)
T ss_dssp             EEETTCHHHHHHHHHHHTTSSSCEEEEEEEECCGGGSSCEEEEEEE
T ss_pred             cCCCcchhHHHHHHHHHHHhCCcceEeeEEEEecCCCCceeeeEEE
Confidence                  5666677777777652111   11  22333467777743

>3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli}

Probab=87.07  E-value=0.29  Score=45.92  Aligned_cols=49  Identities=14%  Similarity=0.170  Sum_probs=40.0

Q ss_pred             HHhhcCCCccEEEecCCchhhhhhhccCC--CcEEEecCChhHHHHhhhcCC
Q 019623          104 ALSRCSPSCNFLVFGLTHETLLWKSLNFQ--GHTIFVDESEFLVQSFEKNHP  153 (338)
Q Consensus       104 vL~~~raPCNfLVFGLg~dsllW~aLN~g--GrTVFLEEd~~~i~~~~~~~P  153 (338)
                      ++.. ..|=|.||.|+|-...+-..+.|.  -+.+.+|=|+.-|+-.++-+|
T Consensus        78 l~~~-p~pk~VLIiGgGdG~~~revlk~~~v~~v~~VEID~~Vv~~a~~~lp  128 (294)
T 3o4f_A           78 LLAH-GHAKHVLIIGGGDGAMLREVTRHKNVESITMVEIDAGVVSFCRQYLP  128 (294)
T ss_dssp             HHHS-SCCCEEEEESCTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCH
T ss_pred             HhhC-CCCCeEEEECCCchHHHHHHHHcCCcceEEEEcCCHHHHHHHHhcCc
Confidence            3444 779999999999999998888874  477889999999988776554

>1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17

Probab=83.86  E-value=5.8  Score=35.33  Aligned_cols=45  Identities=18%  Similarity=0.173  Sum_probs=37.3

Q ss_pred             CCCccEEEecCCchhhhhhhccC--CCcEEEecCChhHHHHhhhcCC
Q 019623          109 SPSCNFLVFGLTHETLLWKSLNF--QGHTIFVDESEFLVQSFEKNHP  153 (338)
Q Consensus       109 raPCNfLVFGLg~dsllW~aLN~--gGrTVFLEEd~~~i~~~~~~~P  153 (338)
                      ..|.++|+.|.|--.+.-..+.+  ..+-+.+|-|+.-++.+++..+
T Consensus        74 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vEid~~~v~~ar~~~~  120 (275)
T 1iy9_A           74 PNPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLP  120 (275)
T ss_dssp             SSCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCH
T ss_pred             CCCCEEEEECCchHHHHHHHHhCCCCceEEEEECCHHHHHHHHHHhH
Confidence            56899999999988877766666  3688999999999999887654

>3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032}

Probab=83.56  E-value=1.3  Score=41.60  Aligned_cols=44  Identities=11%  Similarity=-0.085  Sum_probs=35.4

Q ss_pred             CccEEEecCCchhhhhhhcc--CCCcEEEecCChhHHHHhhhcCCC
Q 019623          111 SCNFLVFGLTHETLLWKSLN--FQGHTIFVDESEFLVQSFEKNHPD  154 (338)
Q Consensus       111 PCNfLVFGLg~dsllW~aLN--~gGrTVFLEEd~~~i~~~~~~~P~  154 (338)
                      |.+.|+.|.|--++.-..+.  ++.+.+-+|=|+..++.+++.++.
T Consensus        90 ~~rVLdIG~G~G~la~~la~~~p~~~v~~VEidp~vi~~Ar~~~~~  135 (317)
T 3gjy_A           90 KLRITHLGGGACTMARYFADVYPQSRNTVVELDAELARLSREWFDI  135 (317)
T ss_dssp             GCEEEEESCGGGHHHHHHHHHSTTCEEEEEESCHHHHHHHHHHSCC
T ss_pred             CCEEEEEECCcCHHHHHHHHHCCCcEEEEEECCHHHHHHHHHhccc
Confidence            45999999998877655554  577888999999999999987764

>2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A*

Probab=82.99  E-value=4.1  Score=36.39  Aligned_cols=46  Identities=11%  Similarity=0.112  Sum_probs=38.1

Q ss_pred             CCCccEEEecCCchhhhhhhccC--CCcEEEecCChhHHHHhhhcCCC
Q 019623          109 SPSCNFLVFGLTHETLLWKSLNF--QGHTIFVDESEFLVQSFEKNHPD  154 (338)
Q Consensus       109 raPCNfLVFGLg~dsllW~aLN~--gGrTVFLEEd~~~i~~~~~~~P~  154 (338)
                      ..|-++|+.|.|.-.+.-..+.+  +++-+.+|=|+.-++.+++..+.
T Consensus        77 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~  124 (283)
T 2i7c_A           77 KEPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKN  124 (283)
T ss_dssp             SSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTT
T ss_pred             CCCCeEEEEeCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHH
Confidence            57899999999988777766665  47899999999999998887664

>2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17

Probab=81.27  E-value=4.1  Score=37.54  Aligned_cols=46  Identities=15%  Similarity=0.220  Sum_probs=37.3

Q ss_pred             CCCccEEEecCCchhhhhhhccC--CCcEEEecCChhHHHHhhhcCCC
Q 019623          109 SPSCNFLVFGLTHETLLWKSLNF--QGHTIFVDESEFLVQSFEKNHPD  154 (338)
Q Consensus       109 raPCNfLVFGLg~dsllW~aLN~--gGrTVFLEEd~~~i~~~~~~~P~  154 (338)
                      ..|-++|+.|.|.-...-..+.+  +++-+.+|=|+..++.+++..+.
T Consensus       107 ~~~~~VLdIG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~Ar~~~~~  154 (314)
T 2b2c_A          107 PDPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPG  154 (314)
T ss_dssp             SSCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTT
T ss_pred             CCCCEEEEEcCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHH
Confidence            57899999999987665555544  57899999999999999987764

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	338
d2cl5a1	214	Catechol O-methyltransferase, COMT {Rat (Rattus no	95.49
d1mjfa_	276	Putative spermidine synthetase PF0127 (SpeE) {Arch	92.81
d1susa1	227	Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicag	91.84
d2b2ca1	312	Spermidine synthase {Caenorhabditis elegans [TaxId	90.8
d1xj5a_	290	Spermidine synthase {Thale cress (Arabidopsis thal	89.83
d1uira_	312	Spermidine synthase {Thermus thermophilus [TaxId:	89.03
d1ws6a1	171	Methyltransferase TTHA0928 {Thermus thermophilus [	87.77
d2o07a1	285	Spermidine synthase {Human (Homo sapiens) [TaxId:	86.99
d1iy9a_	274	Spermidine synthase {Bacillus subtilis [TaxId: 142	85.32
d1inla_	295	Spermidine synthase {Thermotoga maritima [TaxId: 2	83.94
d2avda1	219	COMT domain-containing protein 1, COMTD1 {Human (H	81.71

>d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Catechol O-methyltransferase, COMT
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.49  E-value=0.022  Score=47.93  Aligned_cols=75  Identities=8%  Similarity=0.033  Sum_probs=56.4

Q ss_pred             CcHHHHHHHHHhhccCCCCC-CHHHH-HHHHHHHhhcCCCccEEEec--CCchhhhhh-hccCCCcEEEecCChhHHHHh
Q 019623           74 SSSIITAALLHYTLTSNSTM-TSAEL-TAVADALSRCSPSCNFLVFG--LTHETLLWK-SLNFQGHTIFVDESEFLVQSF  148 (338)
Q Consensus        74 lp~~v~~ALvHYAt~sn~tq-t~~Ei-~~~~~vL~~~raPCNfLVFG--Lg~dsllW~-aLN~gGrTVFLEEd~~~i~~~  148 (338)
                      -|.+|++++=.||...+..| -..|- +.+..+++. ..|-++|-+|  .|..++.|+ ++..||+-+=+|=++.|++.+
T Consensus        19 ~p~~vl~~~~~~~~~~~~~m~i~~~~G~lL~~lv~~-~kpk~ILEiGt~~G~Sti~la~al~~~g~v~sid~~~~~~~~a   97 (214)
T d2cl5a1          19 DPQSVLEAIDTYCTQKEWAMNVGDAKGQIMDAVIRE-YSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEMNPDYAAIT   97 (214)
T ss_dssp             CHHHHHHHHHHHHHHTCCCCSCHHHHHHHHHHHHHH-HCCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHH
T ss_pred             CHHHHHHHHHHHHhhcCCccccCHHHHHHHHHHHHh-hCCCEEEEEccCchhHHHHHHHhCCCccEEEEEeccHHHHHHH
Confidence            46789999999998555554 34444 456666665 6799999998  577777665 356789999999999998876


Q ss_pred             h
Q 019623          149 E  149 (338)
Q Consensus       149 ~  149 (338)
                      +
T Consensus        98 ~   98 (214)
T d2cl5a1          98 Q   98 (214)
T ss_dssp             H
T ss_pred             H
Confidence            5

>d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Putative spermidine synthetase PF0127 (SpeE)
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=92.81  E-value=0.11  Score=45.24  Aligned_cols=44  Identities=16%  Similarity=0.098  Sum_probs=36.9

Q ss_pred             CCCccEEEecCCchhhhhhhccCCC-cEEEecCChhHHHHhhhcC
Q 019623          109 SPSCNFLVFGLTHETLLWKSLNFQG-HTIFVDESEFLVQSFEKNH  152 (338)
Q Consensus       109 raPCNfLVFGLg~dsllW~aLN~gG-rTVFLEEd~~~i~~~~~~~  152 (338)
                      ..|-|.||.|+|--..++..+.|+. +...+|=||.-|+-.++-+
T Consensus        71 ~~p~~vLiiG~G~G~~~~~~l~~~~~~v~~VEiD~~Vi~~a~~~f  115 (276)
T d1mjfa_          71 PKPKRVLVIGGGDGGTVREVLQHDVDEVIMVEIDEDVIMVSKDLI  115 (276)
T ss_dssp             SCCCEEEEEECTTSHHHHHHTTSCCSEEEEEESCHHHHHHHHHHT
T ss_pred             CCCceEEEecCCchHHHHHHHHhCCceEEEecCCHHHHHHHHHhh
Confidence            6799999999999999999898864 5667899999998777543

>d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Caffeoyl-CoA O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=91.84  E-value=0.14  Score=43.81  Aligned_cols=143  Identities=13%  Similarity=0.065  Sum_probs=87.6

Q ss_pred             cHHHHHHHHHhhccCCCC--CCHHHHHHHHHHHhhcCCCccEEEecC--Cchhhhhh-hccCCCcEEEecCChhHHHHhh
Q 019623           75 SSIITAALLHYTLTSNST--MTSAELTAVADALSRCSPSCNFLVFGL--THETLLWK-SLNFQGHTIFVDESEFLVQSFE  149 (338)
Q Consensus        75 p~~v~~ALvHYAt~sn~t--qt~~Ei~~~~~vL~~~raPCNfLVFGL--g~dsllW~-aLN~gGrTVFLEEd~~~i~~~~  149 (338)
                      ++++++.|..++.....+  +...|...+...|-+...|=+.|-+|-  |.-++.++ ++..+|+-+=+|-|+++++.++
T Consensus        22 ~~~~l~~l~~~~~~~~~~~m~~~~~~g~~L~~L~~~~~~k~iLEiGT~~GyStl~la~al~~~g~v~tie~~~~~~~~A~  101 (227)
T d1susa1          22 EHEAMKELREVTAKHPWNIMTTSADEGQFLSMLLKLINAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGL  101 (227)
T ss_dssp             CTTHHHHHHHHHHTSTTGGGSCCHHHHHHHHHHHHHHTCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHH
T ss_pred             CCHHHHHHHHHHHhCCCcccccCHHHHHHHHHHHHhcCCCcEEEecchhhhhHHHHHhhCCCCcEEEEEeccchhHHHHH
Confidence            456788899998633223  344555555555545578999999986  44444444 5667999999999999988777


Q ss_pred             hcC--CCceeEEeEecccccchHHHHHHHHhcCCCCCccccccccccccccccCCCcccccccccEEEEcCCCCCCCCCC
Q 019623          150 KNH--PDFEIYDVQYTTKVEEMNPTLHAVRKQFKDDCRPMQNLLFSDCKLAINDMPNHVYDMDWDVVLVDGPSGYFPRAP  227 (338)
Q Consensus       150 ~~~--P~leay~V~Y~T~v~ea~~LL~~~r~~~~~~C~p~~~l~~S~CkLAL~~LP~evYe~~WDVImVDgP~Gy~peaP  227 (338)
                      +..  .+++ .+|.  -...+|.+.|...-.                         +...+-.+|+|+|||=++..+   
T Consensus       102 ~~~~~~g~~-~~i~--~~~g~a~~~L~~l~~-------------------------~~~~~~~fD~iFiDa~k~~y~---  150 (227)
T d1susa1         102 PVIKKAGVD-HKID--FREGPALPVLDEMIK-------------------------DEKNHGSYDFIFVDADKDNYL---  150 (227)
T ss_dssp             HHHHHTTCG-GGEE--EEESCHHHHHHHHHH-------------------------CGGGTTCBSEEEECSCSTTHH---
T ss_pred             HHHHHhccc-ccee--eeehHHHHHHHHHHh-------------------------ccccCCceeEEEeccchhhhH---
Confidence            443  2222 1222  234566666654432                         112345699999999775543   


Q ss_pred             CCchhHhhHHHHHhhccCCCCcceEEEecC
Q 019623          228 GRMAPIFTASVLARSKKAGRKKTHVFVHDF  257 (338)
Q Consensus       228 GRM~aIyTAavmARar~~g~~~TdVfVHDv  257 (338)
                          ..|-.+ +-.-|++|    =+++.||
T Consensus       151 ----~~~e~~-~~ll~~gG----iii~DNv  171 (227)
T d1susa1         151 ----NYHKRL-IDLVKVGG----VIGYDNT  171 (227)
T ss_dssp             ----HHHHHH-HHHBCTTC----CEEEETT
T ss_pred             ----HHHHHH-HhhcCCCc----EEEEccC
Confidence                444433 44445554    3556666

>d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Caenorhabditis elegans [TaxId: 6239]

Probab=90.80  E-value=0.24  Score=44.62  Aligned_cols=107  Identities=15%  Similarity=0.237  Sum_probs=64.8

Q ss_pred             CHHHHHHHHHHHhhcCCCccEEEecCCchhhhhhhccCC--CcEEEecCChhHHHHhhhcCCCcee-E-EeEecccccch
Q 019623           94 TSAELTAVADALSRCSPSCNFLVFGLTHETLLWKSLNFQ--GHTIFVDESEFLVQSFEKNHPDFEI-Y-DVQYTTKVEEM  169 (338)
Q Consensus        94 t~~Ei~~~~~vL~~~raPCNfLVFGLg~dsllW~aLN~g--GrTVFLEEd~~~i~~~~~~~P~lea-y-~V~Y~T~v~ea  169 (338)
                      ...|.-+-.-.+.. ..|=|.||.|+|--..+...+.|.  .+...+|=|+.-|+-.++-+|.... + +=+.+-...+|
T Consensus        91 ~YhE~l~h~pl~~~-~~pk~VLIiGgG~G~~~rellk~~~v~~v~~VEID~~Vv~~a~~~~~~~~~~~~dprv~i~i~Da  169 (312)
T d2b2ca1          91 SYQEMLAHLPMFAH-PDPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDG  169 (312)
T ss_dssp             HHHHHHHHHHHHHS-SSCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCH
T ss_pred             HHHHHhhhHHHhcC-CCCCeEEEeCCCchHHHHHHHHcCCcceEEEEcccHHHHHHHHhhchhhccccCCCCeEEEEchH
Confidence            34454444444555 789999999999999999999876  5899999999999988876664321 0 11112224566


Q ss_pred             HHHHHHHHhcCCCCCccccccccccccccccCCCcccccccccEEEEcCCCCCCCCCCCCchhHhhHH
Q 019623          170 NPTLHAVRKQFKDDCRPMQNLLFSDCKLAINDMPNHVYDMDWDVVLVDGPSGYFPRAPGRMAPIFTAS  237 (338)
Q Consensus       170 ~~LL~~~r~~~~~~C~p~~~l~~S~CkLAL~~LP~evYe~~WDVImVDgP~Gy~peaPGRM~aIyTAa  237 (338)
                      .+-|+   +.                            +-+||||++|.+.+..+  |   ...||--
T Consensus       170 ~~~l~---~~----------------------------~~~yDvII~D~~dp~~~--~---~~L~t~e  201 (312)
T d2b2ca1         170 FEFLK---NH----------------------------KNEFDVIITDSSDPVGP--A---ESLFGQS  201 (312)
T ss_dssp             HHHHH---HC----------------------------TTCEEEEEECCC------------------
T ss_pred             HHHHH---hC----------------------------CCCCCEEEEcCCCCCCc--c---hhhhhHH
Confidence            66553   10                            23599999999875433  2   3466643

>d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=89.83  E-value=0.14  Score=45.23  Aligned_cols=142  Identities=17%  Similarity=0.239  Sum_probs=85.4

Q ss_pred             CCCccEEEecCCchhhhhhhccCC--CcEEEecCChhHHHHhhhcCCCcee--EEeEecccccchHHHHHHHHhcCCCCC
Q 019623          109 SPSCNFLVFGLTHETLLWKSLNFQ--GHTIFVDESEFLVQSFEKNHPDFEI--YDVQYTTKVEEMNPTLHAVRKQFKDDC  184 (338)
Q Consensus       109 raPCNfLVFGLg~dsllW~aLN~g--GrTVFLEEd~~~i~~~~~~~P~lea--y~V~Y~T~v~ea~~LL~~~r~~~~~~C  184 (338)
                      ..|=|.||.|+|--..+...+.|.  .+.+.+|=|+.-|+-.++-+|....  -+-+.+.-+.+|.+             
T Consensus        79 ~~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEiD~~Vi~~~~~~f~~~~~~~~~~r~~i~~~Da~~-------------  145 (290)
T d1xj5a_          79 PNPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVA-------------  145 (290)
T ss_dssp             SCCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHH-------------
T ss_pred             CCCcceEEecCCchHHHHHHHhcccceeeEEecCCHHHHHHHHHhchhhhccccCCCcEEEEccHHH-------------
Confidence            679999999999999999999885  4788999999999888765542210  01111112233333             


Q ss_pred             ccccccccccccccccCCCcccccccccEEEEcCCCCCCCCCCCCchhHhhHHH---HHhhccCCCCcceEEEe------
Q 019623          185 RPMQNLLFSDCKLAINDMPNHVYDMDWDVVLVDGPSGYFPRAPGRMAPIFTASV---LARSKKAGRKKTHVFVH------  255 (338)
Q Consensus       185 ~p~~~l~~S~CkLAL~~LP~evYe~~WDVImVDgP~Gy~peaPGRM~aIyTAav---mARar~~g~~~TdVfVH------  255 (338)
                                   -+++.+.    ..||||++|.+.++.   |.  ...||--.   +.|.=+.| |   |||-      
T Consensus       146 -------------~l~~~~~----~~yDvIi~D~~dp~~---~~--~~L~t~eF~~~~~~~L~~~-G---i~v~q~~s~~  199 (290)
T d1xj5a_         146 -------------FLKNAAE----GSYDAVIVDSSDPIG---PA--KELFEKPFFQSVARALRPG-G---VVCTQAESLW  199 (290)
T ss_dssp             -------------HHHTSCT----TCEEEEEECCCCTTS---GG--GGGGSHHHHHHHHHHEEEE-E---EEEEECCCTT
T ss_pred             -------------HHhhccc----cCccEEEEcCCCCCC---cc--hhhCCHHHHHHHHHhcCCC-c---EEEEecCCcH
Confidence                         3333332    369999999998543   22  46788643   33332222 2   4442      


Q ss_pred             ---cCChhHHHHhhhhhc-cccccc---cc-cCceeeEEeCC
Q 019623          256 ---DFNREVERVCSEEFL-CEENLV---EV-VDKLAHFVVEP  289 (338)
Q Consensus       256 ---DvdR~VE~~~s~EFL-C~~nLv---e~-~grL~HF~Ip~  289 (338)
                         +.-+.+-+.+.+.|- ...|..   .. .+-.|=|.+.+
T Consensus       200 ~~~~~~~~i~~~l~~vF~~~~~y~~~~vPty~~g~w~f~~as  241 (290)
T d1xj5a_         200 LHMDIIEDIVSNCREIFKGSVNYAWTSVPTYPSGVIGFMLCS  241 (290)
T ss_dssp             TCHHHHHHHHHHHHHHCSSCEEEEEEECTTSGGGEEEEEEEE
T ss_pred             HHHHHHHHHHhhhhhhcccceeEeeEeeeeecCCceEEEEEe
Confidence               222455666777774 444432   22 24578888854

>d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermus thermophilus [TaxId: 274]

Probab=89.03  E-value=0.95  Score=39.98  Aligned_cols=45  Identities=20%  Similarity=0.266  Sum_probs=37.3

Q ss_pred             CCCccEEEecCCchhhhhhhccCC--CcEEEecCChhHHHHhhhcCC
Q 019623          109 SPSCNFLVFGLTHETLLWKSLNFQ--GHTIFVDESEFLVQSFEKNHP  153 (338)
Q Consensus       109 raPCNfLVFGLg~dsllW~aLN~g--GrTVFLEEd~~~i~~~~~~~P  153 (338)
                      ..|=|.||.|+|-...+...+.+.  .+-.-+|=|+.-|+-.++-+|
T Consensus        76 ~~pk~VLiiG~G~G~~~~~ll~~~~~~~v~~VEiD~~Vi~~a~~~f~  122 (312)
T d1uira_          76 PEPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMP  122 (312)
T ss_dssp             SCCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCH
T ss_pred             CCcceEEEeCCCchHHHHHHHhcCCcceEEEecCCHHHHHHHHhcCc
Confidence            679999999999998888887764  477889999999987776543

>d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methyltransferase TTHA0928
species: Thermus thermophilus [TaxId: 274]

Probab=87.77  E-value=0.9  Score=36.16  Aligned_cols=98  Identities=12%  Similarity=0.025  Sum_probs=65.1

Q ss_pred             CCHHHHHHHHHHHhh-cCCCccEEEecCCchhhhhhhccCCCcEEEecCChhHHHHhhhcCCCceeEEeEecccccchHH
Q 019623           93 MTSAELTAVADALSR-CSPSCNFLVFGLTHETLLWKSLNFQGHTIFVDESEFLVQSFEKNHPDFEIYDVQYTTKVEEMNP  171 (338)
Q Consensus        93 qt~~Ei~~~~~vL~~-~raPCNfLVFGLg~dsllW~aLN~gGrTVFLEEd~~~i~~~~~~~P~leay~V~Y~T~v~ea~~  171 (338)
                      .+..--..+++.|+. ....+++|=.|=|.-.+--.++..|.+-+|+|-|+.-++.++++.-   .+.+.-+....+++.
T Consensus        23 t~~~v~e~lf~~l~~~~~~g~~vLDl~~G~G~~~i~a~~~ga~vv~vD~~~~a~~~~~~N~~---~~~~~~~v~~~~~d~   99 (171)
T d1ws6a1          23 SPVRLRKALFDYLRLRYPRRGRFLDPFAGSGAVGLEAASEGWEAVLVEKDPEAVRLLKENVR---RTGLGARVVALPVEV   99 (171)
T ss_dssp             CCHHHHHHHHHHHHHHCTTCCEEEEETCSSCHHHHHHHHTTCEEEEECCCHHHHHHHHHHHH---HHTCCCEEECSCHHH
T ss_pred             CcHHHHHHHHHHhhccccCCCeEEEeccccchhhhhhhhccchhhhcccCHHHHhhhhHHHH---hhccccceeeeehhc
Confidence            444445567777763 3457788877777767777788889999999999999998875522   222233344556666


Q ss_pred             HHHHHHhcCCCCCccccccccccccccccCCCcccccccccEEEEcCCCC
Q 019623          172 TLHAVRKQFKDDCRPMQNLLFSDCKLAINDMPNHVYDMDWDVVLVDGPSG  221 (338)
Q Consensus       172 LL~~~r~~~~~~C~p~~~l~~S~CkLAL~~LP~evYe~~WDVImVDgP~G  221 (338)
                      .+...+..                            .-.||+|++|-|=+
T Consensus       100 ~~~~~~~~----------------------------~~~fD~If~DPPY~  121 (171)
T d1ws6a1         100 FLPEAKAQ----------------------------GERFTVAFMAPPYA  121 (171)
T ss_dssp             HHHHHHHT----------------------------TCCEEEEEECCCTT
T ss_pred             cccccccc----------------------------CCccceeEEccccc
Confidence            65533321                            12599999998843

>d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.99  E-value=0.78  Score=40.20  Aligned_cols=92  Identities=17%  Similarity=0.250  Sum_probs=55.0

Q ss_pred             CCCccEEEecCCchhhhhhhccC--CCcEEEecCChhHHHHhhhcCCCcee-E-EeEecccccchHHHHHHHHhcCCCCC
Q 019623          109 SPSCNFLVFGLTHETLLWKSLNF--QGHTIFVDESEFLVQSFEKNHPDFEI-Y-DVQYTTKVEEMNPTLHAVRKQFKDDC  184 (338)
Q Consensus       109 raPCNfLVFGLg~dsllW~aLN~--gGrTVFLEEd~~~i~~~~~~~P~lea-y-~V~Y~T~v~ea~~LL~~~r~~~~~~C  184 (338)
                      ..|=+.||.|+|-...+=..+.|  .-+.+-+|=||.-|+-.++-+|.... + +=+.+....+|.+.|+          
T Consensus        77 ~~pk~vLiiGgG~G~~~~~~l~~~~~~~v~~vEiD~~Vv~~a~~~~~~~~~~~~d~rv~i~~~Da~~~l~----------  146 (285)
T d2o07a1          77 PNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMK----------  146 (285)
T ss_dssp             SSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHH----------
T ss_pred             cCcCeEEEeCCCchHHHHHHHHcCCcceeeeccCCHHHHHHHHhhchhhccccCCCCceEEEccHHHHHh----------
Confidence            78999999999998888777876  34778899999999888765543210 0 1111222356666664          


Q ss_pred             ccccccccccccccccCCCcccccccccEEEEcCCCCCCCCCCCCchhHhhH
Q 019623          185 RPMQNLLFSDCKLAINDMPNHVYDMDWDVVLVDGPSGYFPRAPGRMAPIFTA  236 (338)
Q Consensus       185 ~p~~~l~~S~CkLAL~~LP~evYe~~WDVImVDgP~Gy~peaPGRM~aIyTA  236 (338)
                                      .-     +-++|||++|.+.+..+  |   ..+||-
T Consensus       147 ----------------~~-----~~~yDvIi~D~~~p~~~--~---~~L~t~  172 (285)
T d2o07a1         147 ----------------QN-----QDAFDVIITDSSDPMGP--A---ESLFKE  172 (285)
T ss_dssp             ----------------TC-----SSCEEEEEEECC----------------C
T ss_pred             ----------------cC-----CCCCCEEEEcCCCCCCc--c---cccccH
Confidence                            11     23699999999886543  2   346663

>d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Bacillus subtilis [TaxId: 1423]

Probab=85.32  E-value=1.6  Score=37.69  Aligned_cols=49  Identities=14%  Similarity=0.131  Sum_probs=38.2

Q ss_pred             HHHhhcCCCccEEEecCCchhhhhhhccCC--CcEEEecCChhHHHHhhhcC
Q 019623          103 DALSRCSPSCNFLVFGLTHETLLWKSLNFQ--GHTIFVDESEFLVQSFEKNH  152 (338)
Q Consensus       103 ~vL~~~raPCNfLVFGLg~dsllW~aLN~g--GrTVFLEEd~~~i~~~~~~~  152 (338)
                      -.+.. ..|=|.||.|+|-.+.+=..+.|.  .+-..+|=||.-++-.++-+
T Consensus        69 ~l~~~-~~p~~vLiiGgG~G~~~~~~l~~~~~~~i~~VEID~~Vi~~a~~~~  119 (274)
T d1iy9a_          69 PLFTH-PNPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFL  119 (274)
T ss_dssp             HHHHS-SSCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHC
T ss_pred             hhhcc-CCcceEEecCCCCcHHHHHHHhcCCcceEEEecCCHHHHHHHHHhC
Confidence            33443 789999999999998887777763  47778999999988777544

>d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermotoga maritima [TaxId: 2336]

Probab=83.94  E-value=0.53  Score=41.71  Aligned_cols=44  Identities=14%  Similarity=0.217  Sum_probs=36.5

Q ss_pred             CCCccEEEecCCchhhhhhhccCCC--cEEEecCChhHHHHhhhcC
Q 019623          109 SPSCNFLVFGLTHETLLWKSLNFQG--HTIFVDESEFLVQSFEKNH  152 (338)
Q Consensus       109 raPCNfLVFGLg~dsllW~aLN~gG--rTVFLEEd~~~i~~~~~~~  152 (338)
                      ..|=|.||.|+|-...+-..+.|.+  +-+.+|=||.-|+-.++-+
T Consensus        88 ~~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEIDp~Vi~~a~~~~  133 (295)
T d1inla_          88 PNPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYL  133 (295)
T ss_dssp             SSCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHC
T ss_pred             CCCceEEEecCCchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHH
Confidence            6799999999999999988888753  5677899999988776543

>d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: COMT domain-containing protein 1, COMTD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.71  E-value=2.7  Score=35.00  Aligned_cols=141  Identities=16%  Similarity=0.091  Sum_probs=87.4

Q ss_pred             HHHHHHHHhhccCCCC--CCHHHHHHHHHHHhhcCCCccEEEecCCch-hhhhhh--ccCCCcEEEecCChhHHHHhhhc
Q 019623           77 IITAALLHYTLTSNST--MTSAELTAVADALSRCSPSCNFLVFGLTHE-TLLWKS--LNFQGHTIFVDESEFLVQSFEKN  151 (338)
Q Consensus        77 ~v~~ALvHYAt~sn~t--qt~~Ei~~~~~vL~~~raPCNfLVFGLg~d-sllW~a--LN~gGrTVFLEEd~~~i~~~~~~  151 (338)
                      ++++.|-.++......  |...|...+...|.+...|=|.|-.|-+.- |.+|-+  +..+|+-+=+|-|+.++..+++.
T Consensus        24 ~~l~~l~~~t~~~~~~~~~i~~~~g~lL~~L~~~~~~k~vLEiGt~~GyStl~~a~al~~~g~i~tie~~~~~~~~A~~~  103 (219)
T d2avda1          24 PALRSLRLLTLEQPQGDSMMTCEQAQLLANLARLIQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPL  103 (219)
T ss_dssp             HHHHHHHHHHHTSTTGGGSCCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCCCcccCHHHHHHHHHHHHccCCCeEEEEechhhHHHHHHHHhCCCCceEEEEeechhHHHHHHHH
Confidence            5888888888633222  333444555555555588999999987543 455554  45689999999999998887754


Q ss_pred             CC--CceeEEeEecccccchHHHHHHHHhcCCCCCccccccccccccccccCCCcccccccccEEEEcCCCCCCCCCCCC
Q 019623          152 HP--DFEIYDVQYTTKVEEMNPTLHAVRKQFKDDCRPMQNLLFSDCKLAINDMPNHVYDMDWDVVLVDGPSGYFPRAPGR  229 (338)
Q Consensus       152 ~P--~leay~V~Y~T~v~ea~~LL~~~r~~~~~~C~p~~~l~~S~CkLAL~~LP~evYe~~WDVImVDgP~Gy~peaPGR  229 (338)
                      ..  +++-   +.+-.+.+|.+.|...-.+    .                      .+-.+|+|.+|+-+...+     
T Consensus       104 ~~~ag~~~---~i~~~~Gda~e~l~~~~~~----~----------------------~~~~fD~ifiD~dk~~y~-----  149 (219)
T d2avda1         104 WRQAEAEH---KIDLRLKPALETLDELLAA----G----------------------EAGTFDVAVVDADKENCS-----  149 (219)
T ss_dssp             HHHTTCTT---TEEEEESCHHHHHHHHHHT----T----------------------CTTCEEEEEECSCSTTHH-----
T ss_pred             HHhcCccc---eEEEEEeehhhcchhhhhh----c----------------------ccCCccEEEEeCCHHHHH-----
Confidence            32  2221   2334567887777654431    0                      112489999998775542     


Q ss_pred             chhHhhHHHHHhhccCCCCcceEEEecCC
Q 019623          230 MAPIFTASVLARSKKAGRKKTHVFVHDFN  258 (338)
Q Consensus       230 M~aIyTAavmARar~~g~~~TdVfVHDvd  258 (338)
                        ..|-.+ +-+=|++|    =++++|+-
T Consensus       150 --~~~~~~-~~lL~~GG----vii~Dn~l  171 (219)
T d2avda1         150 --AYYERC-LQLLRPGG----ILAVLRVL  171 (219)
T ss_dssp             --HHHHHH-HHHEEEEE----EEEEECCS
T ss_pred             --HHHHHH-HHHhcCCc----EEEEeCCc
Confidence              445443 33335443    46778873