Citrus Sinensis ID: 019648

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------
Protein Sequence
MASRKLVRDLFLSRQRPRFLQLTPLQGSSTRLRLVSANGYSSNRQFSVFKEFSKKIKGEAESNPEFKHSVKELKKKAEEIKGVKEELKERTKQTTEQLYKQVDGVWMEAESTVKKVSASMKEKISAATEEVKGTFRTGSTDTSAKHDDDVRDGFKASSGEEKQKQTVSSDTAETFYGKLKSSISSPKFTLAFQKLKEAKVVDLAKKGYDIVKDELSGSPSKRKHLEYTPSPSWTGEKSTRTDLVVTPSKKSMWSKLKEKMQGYPVFKRITGISEPVVTKGQEIAEDVRERWETSDNPIVHKIQDMNETIFQETDAAASIKEIRRRDPYDHVFFDFCF
Secondary Structure (PSIPRED)
ccHHHHHHHHHHHcccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccHHHHHHHccccHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHcHHHHHHHccccccccccccccccccccccccccccEEEccccHHHHHHHHHHHccccHHHHHHccccccccHHHHHHHHHHHHHHccccHHHHHHHHHHHccccccHHHHHHHHHHHccccccccccccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHHcccHHHHHHHHHcccccEEEEcccccccccccccHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHcccccccccccccccccccccHHHHHHHHHHcccccccHHHHHHHHHccHHHHHHHHHHHHHHHHcccccccccccccccccccccccccEEEEEcccHHHHHHHHHHHHccccHHHHHHcccccHHcHHHHHHHHHHHHHccccccEEEEEEccHHHHccccHHHHHHHHHHHcccccEEEEcccc
Coil and Loop (DISEMBL)
MASRKLVRDLFlsrqrprflqltplqgsstRLRLVsangyssnrqfSVFKEFSKKIkgeaesnpefKHSVKELKKKAEEIKGVKEELKERTKQTTEQLYKQVDGVWMEAESTVKKVSASMKEKISAATEEVkgtfrtgstdtsakhdddvrdgfkassgeekqkqtvssDTAETFYGKlkssisspKFTLAFQKLKEAKVVDLAKKGYDivkdelsgspskrkhleytpspswtgekstrtdlvvtpskKSMWSKLKEKmqgypvfkritgisepvvtkgQEIAEDVRERwetsdnpivhKIQDMNETIFQETDAAASIKeirrrdpydhvffdfcf
Flexible Loop (DISEMBL)
masrklvrdlflsrqrprflqltplqgsstrlRLVSangyssnrqfsvFKEFSKKikgeaesnpefkhsvkELKKKAEeikgvkeelkertkqtteqlykqvdgvWMEAESTVKKVSASMKEKISaateevkgtfrtgstdtsakhdddvrdgfkassgeekqkqtvssdtaETFYGklkssisspKFTLAFQKLKEAKVVDLAKKGYDIVkdelsgspskrkhleytpspswtgekstrtdlvvtpskksmwskLKEKMQGYPVfkritgisepvvtkgqeIAEDVrerwetsdnpivHKIQDMNETIFQETDAAASIKEIRRRDPYDHVFFDFCF
Low Complexity Region (SEG)
MASRKLVRDLFLSRQRPRFLQLTPLQGSSTRLRLVSANGYSSNRQFSVFKEFSKKIKGEAESNPEFKHSVKELKKKAEEIKGVKEELKERTKQTTEQLYKQVDGVWMEAESTVKKVSASMKEKISAATEEVKGTFRTGSTDTSAKHDDDVRDGFKASSGEEKQKQTVSSDTAETFYGKLKSSISSPKFTLAFQKLKEAKVVDLAKKGYDIVKDELSGSPSKRKHLEYTPSPSWTGEKSTRTDLVVTPSKKSMWSKLKEKMQGYPVFKRITGISEPVVTKGQEIAEDVRERWETSDNPIVHKIQDMNETIFQETDAAASIKEIRRRDPYDHVFFDFCF
Disordered region (IsUnstruct)
**********F*******FL********************************************************************************QVDGVWM*******************************************************************************KFTLAFQKLKEAKVVDLAKKGYDIV************************************************MQGYPVFKRITGISEPVVTKGQEIAEDVRERWETSDNPIVHKIQDMNETIFQETDAAASIKEIRRRDPYDHVFFDFC*
Disordered Region (DISOPRED)
******V*DLFLSRQR***********************************FSKKI************************************************************************************************************************************************************************************************************QGYPVFKRITGISEPVVTKGQEIAEDVRERWETSDNPIVHKIQDMNETIFQETDAAASIKEIRRRDPYDHVFFDFCF
Disordered Region (DISEMBL)
MASRKLVRDLFLSRQRPRFLQLTPLQGSSTRLRLVSANGYSSNRQFSVFKEFSKKIKGEAESNPEFKHSVKELKKKAEEIKGVKEELKERTKQTTEQLYKQVDGVWMEAESTVKKVSASMKEKISAATEEVKGTFRTGSTDTSAKHDDDVRDGF****************TAETFYGKLKSSISSPKFTLAFQKLKEAKVVDLAKKGYDIVKDELSGSPSKRKHLEYTPSPSWTGEKSTRTDLVVTPSKKSMWSKLKEKMQGYPVFKRITGISEPVVTKGQEIAEDVRERWETSDNPIVHKIQDMNETIFQETDAAASIKEIRRRDPYDHVFFDFCF
Disordered Region (DISPRO)
**SRKLVRDLFLSRQRPRFLQLTPLQGSSTRLRLVSANGYSSNRQFSVFKEFSKKIKGEAESNPEFKHSVKELKKKAEEIKGVKEELKERTKQTTEQLYKQVDGVWMEAESTVKKVSASMKEKISAATE***********************************************GKLKSSISSPKFTLAFQKLKEAKVVDLAKKGYDIVKDELS*********************STRTDLVVTPSKKSMWSKLKEKMQGYPVFKRITGISEPVVTKGQEIAEDVRERWETSDNPIVHKIQDMNETIFQETDAAASIKEIRRRDPYDHVFFDFCF
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MASRKLVRDLFLSRQRPRFLQLTPLQGSSTRLRLVSANGYSSNRQFSVFKEFSKKIKGEAESNPEFKHSxxxxxxxxxxxxxxxxxxxxxxxxxxxxLYKQVDGVWMEAESTVKKVSASMKEKISAATEEVKGTFRTGSTDTSAKHDDDVRDGFKASSGEEKQKQTVSSDTAETFYGKLKSSISSPKFTLAFQKLKEAKVVDLAKKGYDIVKDELSGSPSKRKHLEYTPSPSWTGEKSTRTDLVVTPSKKSMWSKLKEKMQGYPVFKRITGISEPVVTKGQEIAEDVRERWETSDNPIVHKIQDMNETIFQETDAAASIKEIRRRDPYDHVFFDFCF
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	337	2.2.26 [Sep-21-2011]
Q5XF06	469	Mitochondrial import inne	yes	no	0.943	0.678	0.616	1e-110
Q1PF33	474	Mitochondrial import inne	no	no	0.952	0.677	0.567	6e-99

>sp|Q5XF06|TI442_ARATH Mitochondrial import inner membrane translocase subunit TIM44-2 OS=Arabidopsis thaliana GN=TIM44-2 PE=1 SV=1

 Score =  397 bits (1019), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 204/331 (61%), Positives = 259/331 (78%), Gaps = 13/331 (3%)

Query: 1   MASRKLVRDLFLSRQRPRFLQLTPLQGSSTRLRLVSANGYSSNRQFSVFKEFSKKIKGEA 60
           MASRKLVRDL +++Q P   QL   +    RL L+  NG++S+R+FSVF EFSKKI+GEA
Sbjct: 1   MASRKLVRDLLITKQ-PLLQQLVHQRRVGARLGLLQGNGFASHRRFSVFSEFSKKIRGEA 59

Query: 61  ESNPEFKHSVKELKKKAEEIKGVKEELKERTKQTTEQLYKQVDGVWMEAESTVKKVSASM 120
           +SNPEF+ +VKE K++AEE++GVKE+LK RTKQTTE+LYKQ  GVW EAES  KKVS+S+
Sbjct: 60  DSNPEFQKTVKEFKERAEELQGVKEDLKVRTKQTTEKLYKQGQGVWTEAESVAKKVSSSV 119

Query: 121 KEKISAATEEVKGTFRTGSTDTSAKHDDDVRDGFKASSGEEKQKQTVSSDTAETFYGKLK 180
           K+K SAATEEVK +F+ G  +++         G   + GE++Q+Q+ S++  +TF+GK K
Sbjct: 120 KDKFSAATEEVKESFKLGKEESAES---ASSSGTGTTEGEKQQQQSGSTEEQDTFFGKFK 176

Query: 181 SSISSPKFTLAFQKLKEAKVVDLAKKGYDIVKDELSGSPSKRKHLEYTPSPSWTGEKSTR 240
           SSISSPK + AF      K +D AKKG DIVKDEL G+PSKRKHLEYTP P +TGE+STR
Sbjct: 177 SSISSPKLSEAFH-----KPLDFAKKGLDIVKDELRGNPSKRKHLEYTPPPPFTGERSTR 231

Query: 241 TDLVVTPSKKSMWSK----LKEKMQGYPVFKRITGISEPVVTKGQEIAEDVRERWETSDN 296
           T++V+ P+K+S W K    L+EKMQGYPVFKR++G+SEPVV K QEIAEDVRE+WETSDN
Sbjct: 232 TEMVIMPTKQSKWQKKWESLREKMQGYPVFKRLSGMSEPVVNKSQEIAEDVREKWETSDN 291

Query: 297 PIVHKIQDMNETIFQETDAAASIKEIRRRDP 327
           PIVHKIQDMNE IF+ET +A++ KEIRRRDP
Sbjct: 292 PIVHKIQDMNERIFEETGSASTYKEIRRRDP 322

Essential component of the PAM complex, a complex required for the translocation of transit peptide-containing proteins from the inner membrane into the mitochondrial matrix in an ATP-dependent manner. Recruits mitochondrial HSP70 to drive protein translocation into the matrix using ATP as an energy source.
Arabidopsis thaliana (taxid: 3702)

>sp|Q1PF33|TI441_ARATH Mitochondrial import inner membrane translocase subunit TIM44-1 OS=Arabidopsis thaliana GN=TIM44-1 PE=2 SV=1

 Score =  360 bits (925), Expect = 6e-99,   Method: Compositional matrix adjust.
 Identities = 189/333 (56%), Positives = 248/333 (74%), Gaps = 12/333 (3%)

Query: 1   MASRKLVRDLFLSRQRPRFLQL--TPLQGSSTRLRLVSANGYSSNRQFSVFKEFSKKIKG 58
           MA RK++RDL +++Q P   QL    +  ++ R   + A GY+S+R+FSVF EFSK I+G
Sbjct: 1   MAIRKIIRDLLITKQ-PLLRQLFHQRVLRANARSEFLPAIGYTSHRRFSVFTEFSKNIRG 59

Query: 59  EAESNPEFKHSVKELKKKAEEIKGVKEELKERTKQTTEQLYKQVDGVWMEAESTVKKVSA 118
           EA SNPEF+ +VKELK++ EE KGV E+LK RTKQTTE+LYKQ DGVW EAES  KKVS+
Sbjct: 60  EAHSNPEFERTVKELKERTEEFKGVTEDLKVRTKQTTEKLYKQADGVWTEAESAAKKVSS 119

Query: 119 SMKEKISAATEEVKGTFRTGSTDTSAKHDDDVRDGFKASSGEEKQKQTVSSDTAETFYGK 178
           S+K+K+SAA+EEVK +F+ G  + +   +     G +AS GE  ++Q+ S++   TF+ K
Sbjct: 120 SVKDKLSAASEEVKESFKLGKEENA---ESASSSGTRASQGE--KQQSGSTEELHTFFAK 174

Query: 179 LKSSISSPKFTLAFQKLKEAKVVDLAKKGYDIVKDELSGSPSKRKHLEYTPSPSWTGEKS 238
            KSS+SSPK +  F +LKEAK  D+ K+  DIVKDEL G+PS++K LE+TP P +TGE+S
Sbjct: 175 FKSSLSSPKVSEVFYRLKEAKPFDIVKQALDIVKDELRGNPSRKKFLEHTPPPPFTGERS 234

Query: 239 TRTDLVVTPSKKS----MWSKLKEKMQGYPVFKRITGISEPVVTKGQEIAEDVRERWETS 294
            RT++VVT +K+S     W   +EKMQG PVFKR++G+SEPVV K QEIAEDVRE WETS
Sbjct: 235 MRTEMVVTQTKQSKLQQKWESFREKMQGSPVFKRLSGMSEPVVNKSQEIAEDVREIWETS 294

Query: 295 DNPIVHKIQDMNETIFQETDAAASIKEIRRRDP 327
           DNPIVHKIQDMNE   +ETD+A++ KEIR RDP
Sbjct: 295 DNPIVHKIQDMNEKFLKETDSASTYKEIRSRDP 327

Essential component of the PAM complex, a complex required for the translocation of transit peptide-containing proteins from the inner membrane into the mitochondrial matrix in an ATP-dependent manner. Recruits mitochondrial HSP70 to drive protein translocation into the matrix using ATP as an energy source.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	337
225438141	485	PREDICTED: mitochondrial import inner me	0.967	0.672	0.672	1e-117
224062145	484	predicted protein [Populus trichocarpa]	0.967	0.673	0.665	1e-117
255567254	486	mitochondrial import inner membrane tran	0.967	0.670	0.685	1e-116
297744147	484	unnamed protein product [Vitis vinifera]	0.964	0.671	0.663	1e-114
224085633	485	predicted protein [Populus trichocarpa]	0.964	0.670	0.656	1e-111
42569661	469	translocase inner membrane subunit 44-2	0.943	0.678	0.616	1e-108
449526090	484	PREDICTED: uncharacterized protein LOC10	0.967	0.673	0.618	1e-103
297836804	477	mitochondrial import inner membrane tran	0.955	0.675	0.6	1e-102
297827085	469	attim44-2 [Arabidopsis lyrata subsp. lyr	0.943	0.678	0.607	1e-101
18399377	472	translocase inner membrane subunit 44-1	0.952	0.680	0.570	3e-98

>gi|225438141|ref|XP_002278528.1| PREDICTED: mitochondrial import inner membrane translocase subunit tim44-like [Vitis vinifera]

 Score =  429 bits (1102), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 228/339 (67%), Positives = 267/339 (78%), Gaps = 13/339 (3%)

Query: 1   MASRKLVRDLFLSRQRPRFLQLTPLQGSSTRLRLVSANGYSSNRQFSVFKEFSKKIKGEA 60
           M SRKLVRDL+LS+Q      L+  Q SS RLRL+S NG S  R FSVF EFS KIKGE 
Sbjct: 1   MGSRKLVRDLYLSKQPLLLHLLSSQQASSARLRLISPNGCSGYRGFSVFNEFSNKIKGEV 60

Query: 61  ESNPEFKHSVKELKKKAEEIKGVKEELKERTKQTTEQLYKQVDGVWMEAESTVKKVSASM 120
             N EF+ +VKELK+KAEE+KGVKEELK RTKQTTEQLYK VDGVW EAE+T KKVSA++
Sbjct: 61  NRNSEFQQTVKELKEKAEELKGVKEELKVRTKQTTEQLYKHVDGVWTEAEATAKKVSANV 120

Query: 121 KEKISAATEEVKGTFRTG------STDTSAKHDDDVRDGFKASSGEEKQKQTVSSDTAET 174
           KEKISAATE+VK TF  G      S  TSAK + DV  G  +SSGEEK  ++  SDTAET
Sbjct: 121 KEKISAATEDVKETFGKGKQEFSESAGTSAKSEADVNKG-SSSSGEEKHHKSGPSDTAET 179

Query: 175 FYGKLKSSIS--SPKFTLAFQKLKEAKVVDLAKKGYDIVKDELSGSPSKRKHLEYTPSPS 232
            +GK KSS+S  SPK +LAF+KLKEAKV+DLAKKGY IVKDELS +PSKRK ++   S +
Sbjct: 180 LFGKFKSSVSTVSPKVSLAFEKLKEAKVLDLAKKGYGIVKDELSSNPSKRKQMQRAASSA 239

Query: 233 WTGEKSTRTDLVVTPSKKSMWSK----LKEKMQGYPVFKRITGISEPVVTKGQEIAEDVR 288
             GE+ST+TD+V+ PSK+S WSK    LK+KMQG+PVFKRI+G+SEPVVTKGQE+AEDVR
Sbjct: 240 SPGERSTKTDIVIVPSKQSRWSKKWEALKDKMQGHPVFKRISGLSEPVVTKGQELAEDVR 299

Query: 289 ERWETSDNPIVHKIQDMNETIFQETDAAASIKEIRRRDP 327
           ERWETSDNP+VHKIQD+NE++F ET AA S KEIRRRDP
Sbjct: 300 ERWETSDNPVVHKIQDLNESVFGETAAAMSFKEIRRRDP 338

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224062145|ref|XP_002300777.1| predicted protein [Populus trichocarpa] gi|222842503|gb|EEE80050.1| predicted protein [Populus trichocarpa]

 Score =  426 bits (1096), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 225/338 (66%), Positives = 271/338 (80%), Gaps = 12/338 (3%)

Query: 1   MASRKLVRDLFLSRQRPRFLQLTPLQGSSTRLRLVSANG--YSSNRQFSVFKEFSKKIKG 58
           MASRKLVRDLFLSRQ P FL+LT  Q S  RL+++S +G  Y   R+FSVF EFS K+KG
Sbjct: 1   MASRKLVRDLFLSRQ-PLFLRLTSKQVSGRRLQVLSNHGCTYYGYRRFSVFNEFSNKVKG 59

Query: 59  EAESNPEFKHSVKELKKKAEEIKGVKEELKERTKQTTEQLYKQVDGVWMEAESTVKKVSA 118
           EA+ N EFK SVKELK+KAEE+KG KEELK RTKQTTEQLYK VDGVW EAE+T KKVSA
Sbjct: 60  EADRNQEFKQSVKELKEKAEELKGAKEELKVRTKQTTEQLYKHVDGVWTEAEATAKKVSA 119

Query: 119 SMKEKISAATEEVKGTFRTG-----STDTSAKHDDDVRDGFKASSGEEKQKQTVSSDTAE 173
           ++KEKISAATEEVK TF  G     S  TSAK      +G KAS+GEE  KQT + DTAE
Sbjct: 120 NVKEKISAATEEVKETFGIGKESSESAGTSAKDGAGAEEGTKASTGEEADKQTGTGDTAE 179

Query: 174 TFYGKLKSSISSPKFTLAFQKLKEAKVVDLAKKGYDIVKDELSGSPSKRKHLEYTPSPSW 233
           +F+GK KS I S   + A+QKLKEA+V ++ KKGYD+VKDEL G+ +KRKHLE+TP P++
Sbjct: 180 SFFGKFKSRIPSSNVSSAYQKLKEARVSEMMKKGYDVVKDELYGNTNKRKHLEHTPPPAF 239

Query: 234 TGEKSTRTDLVVTPSKKSMWSK----LKEKMQGYPVFKRITGISEPVVTKGQEIAEDVRE 289
           +GE ST+TD+VV PSK+S WSK     +EKMQG+P+FKR +G+SEPVVTKGQEIAED+RE
Sbjct: 240 SGEISTKTDVVVLPSKQSRWSKKWEAFREKMQGHPLFKRFSGLSEPVVTKGQEIAEDMRE 299

Query: 290 RWETSDNPIVHKIQDMNETIFQETDAAASIKEIRRRDP 327
           RWETSD+PIV KIQD++++IFQE+DAAAS KEIRR+DP
Sbjct: 300 RWETSDSPIVIKIQDVSDSIFQESDAAASFKEIRRKDP 337

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255567254|ref|XP_002524608.1| mitochondrial import inner membrane translocase subunit tim44, putative [Ricinus communis] gi|223536161|gb|EEF37816.1| mitochondrial import inner membrane translocase subunit tim44, putative [Ricinus communis]

 Score =  424 bits (1091), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 233/340 (68%), Positives = 266/340 (78%), Gaps = 14/340 (4%)

Query: 1   MASRKLVRDLFLSRQRPRFLQLTPLQGSSTRLRLVSA--NGYSSN-RQFSVFKEFSKKIK 57
           MA +KLVRDLFLSRQ P FL LT  QGS TRLRL S   NG +   R F VF EFSKK+K
Sbjct: 1   MAGKKLVRDLFLSRQ-PLFLHLTSQQGSRTRLRLPSTLPNGKNMGYRGFGVFSEFSKKVK 59

Query: 58  GEAESNPEFKHSVKELKKKAEEIKGVKEELKERTKQTTEQLYKQVDGVWMEAESTVKKVS 117
           GE   + EF+ SVKELK KAEE+KGVKE+L+ RTK+TTEQLYK VDG W EAE+T KKVS
Sbjct: 60  GEVTRSQEFQQSVKELKDKAEELKGVKEDLRIRTKETTEQLYKHVDGAWTEAEATAKKVS 119

Query: 118 ASMKEKISAATEEVKGTFR------TGSTDTSAKHDDDVRDGFKASSGEEKQKQTVSSDT 171
           A++KEKISAA EEVK T        +GST +S K   DV+D  K+SSGEE  +QT SSD 
Sbjct: 120 ANVKEKISAAKEEVKETLNIGKQESSGSTKSSDKDGADVKDDKKSSSGEETDEQTGSSDN 179

Query: 172 AETFYGKLKSSISSPKFTLAFQKLKEAKVVDLAKKGYDIVKDELSGSPSKRKHLEYTPSP 231
           AE+F+GK KSS  S K + AFQKLKEAKV D  KKGYD+VKDEL G+PSKRKHLEYTP P
Sbjct: 180 AESFFGKFKSSTPSSKLSSAFQKLKEAKVTDFVKKGYDVVKDELYGNPSKRKHLEYTPPP 239

Query: 232 SWTGEKSTRTDLVVTPSKKSMWSK----LKEKMQGYPVFKRITGISEPVVTKGQEIAEDV 287
           S+ GE STRTD+VV PSK+S W+K     +EKMQG+P+FKR  GISEPVVTK QEIAED+
Sbjct: 240 SFKGETSTRTDIVVLPSKQSRWNKKWEAFREKMQGHPLFKRFAGISEPVVTKSQEIAEDM 299

Query: 288 RERWETSDNPIVHKIQDMNETIFQETDAAASIKEIRRRDP 327
           RERWETSDNPIVHKIQD+++TIFQETDAAAS KEIRRRDP
Sbjct: 300 RERWETSDNPIVHKIQDVSDTIFQETDAAASFKEIRRRDP 339

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297744147|emb|CBI37117.3| unnamed protein product [Vitis vinifera]

 Score =  416 bits (1069), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 225/339 (66%), Positives = 264/339 (77%), Gaps = 14/339 (4%)

Query: 1   MASRKLVRDLFLSRQRPRFLQLTPLQGSSTRLRLVSANGYSSNRQFSVFKEFSKKIKGEA 60
           M SRKLVRDL+LS+Q      L+  Q SS RLRL+S NG S  R FSVF EFS KIKGE 
Sbjct: 1   MGSRKLVRDLYLSKQPLLLHLLSSQQASSARLRLISPNGCSGYRGFSVFNEFSNKIKGEV 60

Query: 61  ESNPEFKHSVKELKKKAEEIKGVKEELKERTKQTTEQLYKQVDGVWMEAESTVKKVSASM 120
             N EF+ +VKELK+KAEE+KGVKEELK RTKQTTEQLYK VDGVW EAE+T KKVSA++
Sbjct: 61  NRNSEFQQTVKELKEKAEELKGVKEELKVRTKQTTEQLYKHVDGVWTEAEATAKKVSANV 120

Query: 121 KEKISAATEEVKGTFRTG------STDTSAKHDDDVRDGFKASSGEEKQKQTVSSDTAET 174
           KEKISAATE+VK TF  G      S  TSAK + DV  G  +SSGEEK  ++  SDTAET
Sbjct: 121 KEKISAATEDVKETFGKGKQEFSESAGTSAKSEADVNKG-SSSSGEEKHHKSGPSDTAET 179

Query: 175 FYGKLKSSIS--SPKFTLAFQKLKEAKVVDLAKKGYDIVKDELSGSPSKRKHLEYTPSPS 232
            +GK KSS+S  SPK +LAF+KLKEAKV+DLAKKGY IVKDELS +PSKRK ++   S +
Sbjct: 180 LFGKFKSSVSTVSPKVSLAFEKLKEAKVLDLAKKGYGIVKDELSSNPSKRKQMQRAASSA 239

Query: 233 WTGEKSTRTDLVVTPSKKSMWSK----LKEKMQGYPVFKRITGISEPVVTKGQEIAEDVR 288
             GE+ST+TD+V+ PSK+S WSK    LK+K   +PVFKRI+G+SEPVVTKGQE+AEDVR
Sbjct: 240 SPGERSTKTDIVIVPSKQSRWSKKWEALKDKAS-HPVFKRISGLSEPVVTKGQELAEDVR 298

Query: 289 ERWETSDNPIVHKIQDMNETIFQETDAAASIKEIRRRDP 327
           ERWETSDNP+VHKIQD+NE++F ET AA S KEIRRRDP
Sbjct: 299 ERWETSDNPVVHKIQDLNESVFGETAAAMSFKEIRRRDP 337

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224085633|ref|XP_002307643.1| predicted protein [Populus trichocarpa] gi|222857092|gb|EEE94639.1| predicted protein [Populus trichocarpa]

 Score =  408 bits (1048), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 222/338 (65%), Positives = 265/338 (78%), Gaps = 13/338 (3%)

Query: 1   MASRKLVRDLFLSRQRPRFLQLTPLQGSSTRLRLVSANG--YSSNRQFSVFKEFSKKIKG 58
           MASRKLVRDL LSRQ P FL     Q  S+RL++VS  G  YS  R+FSVF EFSKK+KG
Sbjct: 1   MASRKLVRDLVLSRQ-PLFLHFISKQVPSSRLQVVSNYGCPYSGYRRFSVFNEFSKKVKG 59

Query: 59  EAESNPEFKHSVKELKKKAEEIKGVKEELKERTKQTTEQLYKQVDGVWMEAESTVKKVSA 118
           EA+ N EFK SVKELK+KAEE+KGVKEELK RTKQTTE+LYK VD VW EAE+T KKVSA
Sbjct: 60  EAQINLEFKQSVKELKEKAEELKGVKEELKVRTKQTTEKLYKHVDCVWTEAEATAKKVSA 119

Query: 119 SMKEKISAATEEVKGTFRTGSTDTSAKHDDDVRDGF------KASSGEEKQKQTVSSDTA 172
           ++KEK+SAATEEVK TF  G  ++S       +DG       KA  GEE  KQT +SDTA
Sbjct: 120 NVKEKVSAATEEVKETFGIGKEESSESAGTSAKDGVGAEECRKAFPGEEADKQTGTSDTA 179

Query: 173 ETFYGKLKSSISSPKFTLAFQKLKEAKVVDLAKKGYDIVKDELSGSPSKRKHLEYTPSPS 232
           ET +GK KSSI S K + AFQKLKEA+V ++ KKGYD+VKDEL G+ + RKHLEYTP PS
Sbjct: 180 ETLFGKFKSSIPSSKVSSAFQKLKEARVSEMMKKGYDVVKDELYGNTNTRKHLEYTPPPS 239

Query: 233 WTGEKSTRTDLVVTPSKKSMWSK----LKEKMQGYPVFKRITGISEPVVTKGQEIAEDVR 288
           ++GE ST+TD+ V PSK+S WSK    ++EKMQG+P+FK   G+SEPVVTKG EIAED+R
Sbjct: 240 FSGEISTKTDIAVLPSKQSRWSKKWEAIREKMQGHPLFKHFAGLSEPVVTKGHEIAEDMR 299

Query: 289 ERWETSDNPIVHKIQDMNETIFQETDAAASIKEIRRRD 326
           +RWETSD+PIVHKIQD++++IFQE+DAAASIKEIRRRD
Sbjct: 300 DRWETSDSPIVHKIQDVSDSIFQESDAAASIKEIRRRD 337

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|42569661|ref|NP_181151.3| translocase inner membrane subunit 44-2 [Arabidopsis thaliana] gi|75110963|sp|Q5XF06.1|TI442_ARATH RecName: Full=Mitochondrial import inner membrane translocase subunit TIM44-2; Flags: Precursor gi|53828527|gb|AAU94373.1| At2g36070 [Arabidopsis thaliana] gi|330254108|gb|AEC09202.1| translocase inner membrane subunit 44-2 [Arabidopsis thaliana]

 Score =  397 bits (1019), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 204/331 (61%), Positives = 259/331 (78%), Gaps = 13/331 (3%)

Query: 1   MASRKLVRDLFLSRQRPRFLQLTPLQGSSTRLRLVSANGYSSNRQFSVFKEFSKKIKGEA 60
           MASRKLVRDL +++Q P   QL   +    RL L+  NG++S+R+FSVF EFSKKI+GEA
Sbjct: 1   MASRKLVRDLLITKQ-PLLQQLVHQRRVGARLGLLQGNGFASHRRFSVFSEFSKKIRGEA 59

Query: 61  ESNPEFKHSVKELKKKAEEIKGVKEELKERTKQTTEQLYKQVDGVWMEAESTVKKVSASM 120
           +SNPEF+ +VKE K++AEE++GVKE+LK RTKQTTE+LYKQ  GVW EAES  KKVS+S+
Sbjct: 60  DSNPEFQKTVKEFKERAEELQGVKEDLKVRTKQTTEKLYKQGQGVWTEAESVAKKVSSSV 119

Query: 121 KEKISAATEEVKGTFRTGSTDTSAKHDDDVRDGFKASSGEEKQKQTVSSDTAETFYGKLK 180
           K+K SAATEEVK +F+ G  +++         G   + GE++Q+Q+ S++  +TF+GK K
Sbjct: 120 KDKFSAATEEVKESFKLGKEESAES---ASSSGTGTTEGEKQQQQSGSTEEQDTFFGKFK 176

Query: 181 SSISSPKFTLAFQKLKEAKVVDLAKKGYDIVKDELSGSPSKRKHLEYTPSPSWTGEKSTR 240
           SSISSPK + AF      K +D AKKG DIVKDEL G+PSKRKHLEYTP P +TGE+STR
Sbjct: 177 SSISSPKLSEAFH-----KPLDFAKKGLDIVKDELRGNPSKRKHLEYTPPPPFTGERSTR 231

Query: 241 TDLVVTPSKKSMWSK----LKEKMQGYPVFKRITGISEPVVTKGQEIAEDVRERWETSDN 296
           T++V+ P+K+S W K    L+EKMQGYPVFKR++G+SEPVV K QEIAEDVRE+WETSDN
Sbjct: 232 TEMVIMPTKQSKWQKKWESLREKMQGYPVFKRLSGMSEPVVNKSQEIAEDVREKWETSDN 291

Query: 297 PIVHKIQDMNETIFQETDAAASIKEIRRRDP 327
           PIVHKIQDMNE IF+ET +A++ KEIRRRDP
Sbjct: 292 PIVHKIQDMNERIFEETGSASTYKEIRRRDP 322

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449526090|ref|XP_004170047.1| PREDICTED: uncharacterized protein LOC101231997 [Cucumis sativus]

 Score =  382 bits (980), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 209/338 (61%), Positives = 257/338 (76%), Gaps = 12/338 (3%)

Query: 1   MASRKLVRDLFLSRQRPRFLQLTPLQGSSTRLRLVSANGYSSNRQFSVFKEFSKKIKGEA 60
           MA RKLVRD+ LSRQ   + Q T    S TR +L+  +GYS NR+FSVF EFSKK+KGEA
Sbjct: 1   MAGRKLVRDILLSRQSIVY-QFTSHGSSCTRSQLLLPSGYSINRRFSVFNEFSKKVKGEA 59

Query: 61  ESNPEFKHSVKELKKKAEEIKGVKEELKERTKQTTEQLYKQVDGVWMEAESTVKKVSASM 120
           + N EF+ SVKELK+KAEE+KGVKE+LK RTKQTTEQ+YKQVDGVW EAE+T +KVSA +
Sbjct: 60  DKNTEFQQSVKELKEKAEELKGVKEDLKVRTKQTTEQIYKQVDGVWSEAEATARKVSADV 119

Query: 121 KEKISAATEEVKGTF------RTGSTDTSAKHDDDV-RDGFKASSGEEKQKQTVSSDTAE 173
           KEK+SAATEEVK  F       +GST +S  H  D  + G +ASS   K +   SS ++E
Sbjct: 120 KEKLSAATEEVKEAFGFSPKNSSGSTCSSTDHGADAKKHGSEASSENAKDQHPGSSGSSE 179

Query: 174 TFYGKLKSSISSPKFTLAFQKLKEAKVVDLAKKGYDIVKDELSGSPSKRKHLEYTPSPSW 233
           TF+GK KSSI SP  + AF++LK  K++DLAK+G +IVKDELSG P K+KHLEY  S S 
Sbjct: 180 TFFGKFKSSIPSPGISSAFERLKSTKLIDLAKRGCEIVKDELSGKPHKKKHLEYEASASP 239

Query: 234 TGEKSTRTDLVVTPSKKSMWSK----LKEKMQGYPVFKRITGISEPVVTKGQEIAEDVRE 289
             E+STRTD+VV PSK+S WSK     +EKMQG+PV+KR+TG SEPV+++ QE+AE +RE
Sbjct: 240 KVERSTRTDVVVLPSKQSRWSKKWEAFREKMQGHPVYKRVTGYSEPVISRSQEMAEGLRE 299

Query: 290 RWETSDNPIVHKIQDMNETIFQETDAAASIKEIRRRDP 327
            WETSDN IV KIQD+NET+FQE+DAA S KEIRRRDP
Sbjct: 300 TWETSDNIIVQKIQDINETVFQESDAATSFKEIRRRDP 337

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297836804|ref|XP_002886284.1| mitochondrial import inner membrane translocase subunit TIM44 [Arabidopsis lyrata subsp. lyrata] gi|297332124|gb|EFH62543.1| mitochondrial import inner membrane translocase subunit TIM44 [Arabidopsis lyrata subsp. lyrata]

 Score =  377 bits (968), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 201/335 (60%), Positives = 257/335 (76%), Gaps = 13/335 (3%)

Query: 1   MASRKLVRDLFLSRQRPRFLQL---TPLQGSSTRLRLVSANGYSSNRQFSVFKEFSKKIK 57
           MA+RK++RDL +++Q P   QL     L+G+ TR   + A GYSS+R+FSVF EFSK I+
Sbjct: 1   MATRKIIRDLLITKQ-PLLRQLFHQRVLRGN-TRSEFLPAIGYSSHRRFSVFSEFSKNIR 58

Query: 58  GEAESNPEFKHSVKELKKKAEEIKGVKEELKERTKQTTEQLYKQVDGVWMEAESTVKKVS 117
           GEA+SNPEF+ +VKE K++AEE KGVKE+LK RTKQTT+QLYKQVDGVW EAES  KKVS
Sbjct: 59  GEADSNPEFQRTVKEFKERAEEFKGVKEDLKVRTKQTTDQLYKQVDGVWTEAESAPKKVS 118

Query: 118 ASMKEKISAATEEVKGTFRTGSTDTSAKHDDDVRDGFKASSGEEKQ-KQTVSSDTAETFY 176
           +S+K+K+SAATEEVK +F+ G  +++         G + S GE++Q +Q+ S++   TF+
Sbjct: 119 SSVKDKLSAATEEVKESFKLGKEESAES---ASSSGTRTSQGEKQQHQQSGSTEELHTFF 175

Query: 177 GKLKSSISSPKFTLAFQKLKEAKVVDLAKKGYDIVKDELSGSPSKRKHLEYTPSPSWTGE 236
            K KSS+SSPK + AF KLKEAK  D+ KK  DIVKDEL G+PS++K LEYTP P +TGE
Sbjct: 176 AKFKSSLSSPKVSEAFYKLKEAKPFDIVKKALDIVKDELRGNPSRKKFLEYTPPPPFTGE 235

Query: 237 KSTRTDLVVTPSKKSMWSK----LKEKMQGYPVFKRITGISEPVVTKGQEIAEDVRERWE 292
           +S RT++VVTP+K+S W +     KEKMQG PVFKR++ +SEPVV K QEIAEDVRE WE
Sbjct: 236 RSMRTEMVVTPTKQSKWQQKWESFKEKMQGSPVFKRLSRMSEPVVNKSQEIAEDVREIWE 295

Query: 293 TSDNPIVHKIQDMNETIFQETDAAASIKEIRRRDP 327
           TSDNPIVHKIQDMNE   +ETD+A++ KEIR RDP
Sbjct: 296 TSDNPIVHKIQDMNEMFLKETDSASTYKEIRNRDP 330

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297827085|ref|XP_002881425.1| attim44-2 [Arabidopsis lyrata subsp. lyrata] gi|297327264|gb|EFH57684.1| attim44-2 [Arabidopsis lyrata subsp. lyrata]

 Score =  374 bits (961), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 201/331 (60%), Positives = 258/331 (77%), Gaps = 13/331 (3%)

Query: 1   MASRKLVRDLFLSRQRPRFLQLTPLQGSSTRLRLVSANGYSSNRQFSVFKEFSKKIKGEA 60
           MASRKLVRDL +++Q P F QL   +    RL L+S NG++S+R+FSVF EFSKKI+GEA
Sbjct: 1   MASRKLVRDLLITKQ-PLFQQLVHQRRVGARLGLLSGNGFASHRRFSVFSEFSKKIRGEA 59

Query: 61  ESNPEFKHSVKELKKKAEEIKGVKEELKERTKQTTEQLYKQVDGVWMEAESTVKKVSASM 120
           +SNPEF+ +VKE K++A E+K ++E+LK RTKQTTEQLYKQ  GVW EAES  KKVS+S+
Sbjct: 60  DSNPEFQKTVKEFKERAGELKDIREDLKARTKQTTEQLYKQGHGVWTEAESVAKKVSSSV 119

Query: 121 KEKISAATEEVKGTFRTGSTDTSAKHDDDVRDGFKASSGEEKQKQTVSSDTAETFYGKLK 180
           K+K SAATEEVK +F+ G  + +   +     G   + G ++Q+Q+ +++  +TF+GK K
Sbjct: 120 KDKFSAATEEVKESFKLGKEENT---ESASSSGTGTTEGVKQQQQSGTTEEEDTFFGKFK 176

Query: 181 SSISSPKFTLAFQKLKEAKVVDLAKKGYDIVKDELSGSPSKRKHLEYTPSPSWTGEKSTR 240
           SSISSPK + AF      K +D AKKG DIVK+EL G+PSKRKHLEYTP P +TGE+STR
Sbjct: 177 SSISSPKISEAFH-----KPLDFAKKGLDIVKEELRGNPSKRKHLEYTPPPPFTGERSTR 231

Query: 241 TDLVVTPSKKSMWSK----LKEKMQGYPVFKRITGISEPVVTKGQEIAEDVRERWETSDN 296
           T++V+TP+K+S W K    L+EKMQGYPVFKR++G+SEPVV K QEIAEDV E+WETSDN
Sbjct: 232 TEIVITPTKQSKWQKKWESLREKMQGYPVFKRLSGMSEPVVNKSQEIAEDVMEKWETSDN 291

Query: 297 PIVHKIQDMNETIFQETDAAASIKEIRRRDP 327
           PIVHKIQDMNE IF+ET +A++ KEIRRRDP
Sbjct: 292 PIVHKIQDMNEKIFEETGSASTYKEIRRRDP 322

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18399377|ref|NP_565473.1| translocase inner membrane subunit 44-1 [Arabidopsis thaliana] gi|20198086|gb|AAD25651.2| putative mitochondrial inner membrane translocating protein [Arabidopsis thaliana] gi|330251926|gb|AEC07020.1| translocase inner membrane subunit 44-1 [Arabidopsis thaliana]

 Score =  364 bits (935), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 189/331 (57%), Positives = 248/331 (74%), Gaps = 10/331 (3%)

Query: 1   MASRKLVRDLFLSRQRPRFLQLTPLQGSSTRLRLVSANGYSSNRQFSVFKEFSKKIKGEA 60
           MA RK++RDL +++Q P   QL   + ++ R   + A GY+S+R+FSVF EFSK I+GEA
Sbjct: 1   MAIRKIIRDLLITKQ-PLLRQLFHQRRANARSEFLPAIGYTSHRRFSVFTEFSKNIRGEA 59

Query: 61  ESNPEFKHSVKELKKKAEEIKGVKEELKERTKQTTEQLYKQVDGVWMEAESTVKKVSASM 120
            SNPEF+ +VKELK++ EE KGV E+LK RTKQTTE+LYKQ DGVW EAES  KKVS+S+
Sbjct: 60  HSNPEFERTVKELKERTEEFKGVTEDLKVRTKQTTEKLYKQADGVWTEAESAAKKVSSSV 119

Query: 121 KEKISAATEEVKGTFRTGSTDTSAKHDDDVRDGFKASSGEEKQKQTVSSDTAETFYGKLK 180
           K+K+SAA+EEVK +F+ G  + +   +     G +AS GE  ++Q+ S++   TF+ K K
Sbjct: 120 KDKLSAASEEVKESFKLGKEENA---ESASSSGTRASQGE--KQQSGSTEELHTFFAKFK 174

Query: 181 SSISSPKFTLAFQKLKEAKVVDLAKKGYDIVKDELSGSPSKRKHLEYTPSPSWTGEKSTR 240
           SS+SSPK +  F +LKEAK  D+ K+  DIVKDEL G+PS++K LE+TP P +TGE+S R
Sbjct: 175 SSLSSPKVSEVFYRLKEAKPFDIVKQALDIVKDELRGNPSRKKFLEHTPPPPFTGERSMR 234

Query: 241 TDLVVTPSKKS----MWSKLKEKMQGYPVFKRITGISEPVVTKGQEIAEDVRERWETSDN 296
           T++VVT +K+S     W   +EKMQG PVFKR++G+SEPVV K QEIAEDVRE WETSDN
Sbjct: 235 TEMVVTQTKQSKLQQKWESFREKMQGSPVFKRLSGMSEPVVNKSQEIAEDVREIWETSDN 294

Query: 297 PIVHKIQDMNETIFQETDAAASIKEIRRRDP 327
           PIVHKIQDMNE   +ETD+A++ KEIR RDP
Sbjct: 295 PIVHKIQDMNEKFLKETDSASTYKEIRSRDP 325

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	337
TAIR|locus:2039195	469	TIM44-2 "AT2G36070" [Arabidops	0.943	0.678	0.616	6e-103
TAIR|locus:2054759	474	TIM44-1 "translocase inner mem	0.952	0.677	0.573	2.1e-93
UNIPROTKB|Q8IIG7	1070	PF11_0207 "Uncharacterized pro	0.753	0.237	0.236	6.9e-09
UNIPROTKB|F1MSQ6	1082	NEFH "Uncharacterized protein"	0.783	0.243	0.271	9.1e-06
UNIPROTKB|P12036	1026	NEFH "Neurofilament heavy poly	0.768	0.252	0.266	0.00014
UNIPROTKB|Q9XJ56	258	ECPP44 "Phosphoprotein ECPP44"	0.537	0.701	0.245	0.00027
UNIPROTKB|F1PZZ3	1061	NEFH "Uncharacterized protein"	0.643	0.204	0.290	0.0004
UNIPROTKB|Q81YT0	1070	BAS0520 "Putative internalin"	0.427	0.134	0.285	0.0004
TIGR_CMR|BA_0552	1070	BA_0552 "internalin, putative"	0.427	0.134	0.285	0.0004
UNIPROTKB|J9P596	717	TRDN "Triadin" [Canis lupus fa	0.715	0.336	0.233	0.00041

TAIR|locus:2039195 TIM44-2 "AT2G36070" [Arabidopsis thaliana (taxid:3702)]

 Score = 1020 (364.1 bits), Expect = 6.0e-103, P = 6.0e-103
 Identities = 204/331 (61%), Positives = 259/331 (78%)

Query:     1 MASRKLVRDLFLSRQRPRFLQLTPLQGSSTRLRLVSANGYSSNRQFSVFKEFSKKIKGEA 60
             MASRKLVRDL +++Q P   QL   +    RL L+  NG++S+R+FSVF EFSKKI+GEA
Sbjct:     1 MASRKLVRDLLITKQ-PLLQQLVHQRRVGARLGLLQGNGFASHRRFSVFSEFSKKIRGEA 59

Query:    61 ESNPEFKHSVKELKKKAEEIKGVKEELKERTKQTTEQLYKQVDGVWMEAESTVKKVSASM 120
             +SNPEF+ +VKE K++AEE++GVKE+LK RTKQTTE+LYKQ  GVW EAES  KKVS+S+
Sbjct:    60 DSNPEFQKTVKEFKERAEELQGVKEDLKVRTKQTTEKLYKQGQGVWTEAESVAKKVSSSV 119

Query:   121 KEKISAATEEVKGTFRTGSTDTSAKHDDDVRDGFKASSGEEKQKQTVSSDTAETFYGKLK 180
             K+K SAATEEVK +F+ G  +++         G   + GE++Q+Q+ S++  +TF+GK K
Sbjct:   120 KDKFSAATEEVKESFKLGKEESAESASSS---GTGTTEGEKQQQQSGSTEEQDTFFGKFK 176

Query:   181 SSISSPKFTLAFQKLKEAKVVDLAKKGYDIVKDELSGSPSKRKHLEYTPSPSWTGEKSTR 240
             SSISSPK + AF K      +D AKKG DIVKDEL G+PSKRKHLEYTP P +TGE+STR
Sbjct:   177 SSISSPKLSEAFHK-----PLDFAKKGLDIVKDELRGNPSKRKHLEYTPPPPFTGERSTR 231

Query:   241 TDLVVTPSKKSMWSK----LKEKMQGYPVFKRITGISEPVVTKGQEIAEDVRERWETSDN 296
             T++V+ P+K+S W K    L+EKMQGYPVFKR++G+SEPVV K QEIAEDVRE+WETSDN
Sbjct:   232 TEMVIMPTKQSKWQKKWESLREKMQGYPVFKRLSGMSEPVVNKSQEIAEDVREKWETSDN 291

Query:   297 PIVHKIQDMNETIFQETDAAASIKEIRRRDP 327
             PIVHKIQDMNE IF+ET +A++ KEIRRRDP
Sbjct:   292 PIVHKIQDMNERIFEETGSASTYKEIRRRDP 322

GO:0005622 "intracellular" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM;IDA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0015450 "P-P-bond-hydrolysis-driven protein transmembrane transporter activity" evidence=IEA

GO:0005744 "mitochondrial inner membrane presequence translocase complex" evidence=TAS

GO:0006626 "protein targeting to mitochondrion" evidence=RCA;TAS

GO:0015462 "protein-transmembrane transporting ATPase activity" evidence=TAS

GO:0005743 "mitochondrial inner membrane" evidence=IDA

TAIR|locus:2054759 TIM44-1 "translocase inner membrane subunit 44-1" [Arabidopsis thaliana (taxid:3702)]

 Score = 930 (332.4 bits), Expect = 2.1e-93, P = 2.1e-93
 Identities = 191/333 (57%), Positives = 247/333 (74%)

Query:     1 MASRKLVRDLFLSRQRPRFLQL--TPLQGSSTRLRLVSANGYSSNRQFSVFKEFSKKIKG 58
             MA RK++RDL +++Q P   QL    +  ++ R   + A GY+S+R+FSVF EFSK I+G
Sbjct:     1 MAIRKIIRDLLITKQ-PLLRQLFHQRVLRANARSEFLPAIGYTSHRRFSVFTEFSKNIRG 59

Query:    59 EAESNPEFKHSVKELKKKAEEIKGVKEELKERTKQTTEQLYKQVDGVWMEAESTVKKVSA 118
             EA SNPEF+ +VKELK++ EE KGV E+LK RTKQTTE+LYKQ DGVW EAES  KKVS+
Sbjct:    60 EAHSNPEFERTVKELKERTEEFKGVTEDLKVRTKQTTEKLYKQADGVWTEAESAAKKVSS 119

Query:   119 SMKEKISAATEEVKGTFRTGSTDTSAKHDDDVRDGFKASSGEEKQKQTVSSDTAETFYGK 178
             S+K+K+SAA+EEVK +F+ G  + +         G +AS GE KQ Q+ S++   TF+ K
Sbjct:   120 SVKDKLSAASEEVKESFKLGKEENAESASSS---GTRASQGE-KQ-QSGSTEELHTFFAK 174

Query:   179 LKSSISSPKFTLAFQKLKEAKVVDLAKKGYDIVKDELSGSPSKRKHLEYTPSPSWTGEKS 238
              KSS+SSPK +  F +LKEAK  D+ K+  DIVKDEL G+PS++K LE+TP P +TGE+S
Sbjct:   175 FKSSLSSPKVSEVFYRLKEAKPFDIVKQALDIVKDELRGNPSRKKFLEHTPPPPFTGERS 234

Query:   239 TRTDLVVTPSKKSM----WSKLKEKMQGYPVFKRITGISEPVVTKGQEIAEDVRERWETS 294
              RT++VVT +K+S     W   +EKMQG PVFKR++G+SEPVV K QEIAEDVRE WETS
Sbjct:   235 MRTEMVVTQTKQSKLQQKWESFREKMQGSPVFKRLSGMSEPVVNKSQEIAEDVREIWETS 294

Query:   295 DNPIVHKIQDMNETIFQETDAAASIKEIRRRDP 327
             DNPIVHKIQDMNE   +ETD+A++ KEIR RDP
Sbjct:   295 DNPIVHKIQDMNEKFLKETDSASTYKEIRSRDP 327

GO:0005739 "mitochondrion" evidence=ISM

GO:0005744 "mitochondrial inner membrane presequence translocase complex" evidence=IEA;TAS

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0015450 "P-P-bond-hydrolysis-driven protein transmembrane transporter activity" evidence=IEA

GO:0006626 "protein targeting to mitochondrion" evidence=TAS

GO:0015462 "protein-transmembrane transporting ATPase activity" evidence=TAS

UNIPROTKB|Q8IIG7 PF11_0207 "Uncharacterized protein PF11_0207" [Plasmodium falciparum 3D7 (taxid:36329)]

 Score = 165 (63.1 bits), Expect = 6.9e-09, P = 6.9e-09
 Identities = 64/271 (23%), Positives = 128/271 (47%)

Query:     3 SRKLVRDLFLSR-QRPRFLQLTPLQGSSTRLRLVSANGYSS--NRQFSVFKEFSKKIKGE 59
             + K  + L+L R +  R  +    Q + T +++           R+  + +EF +++K E
Sbjct:   444 TNKSEKPLYLRRLEEYRKKKKLESQANDTAMKMHEKEQIDDIQERKEEIKEEFKEEVKEE 503

Query:    60 A-ESNPEFKHSVKELKKKA-EEIKGVKEELKERTKQTTEQLYKQVDGVW---MEAESTVK 114
               E   E K   +E+K++  EEIK VKEE+KE  K+  +++ +++  V     E +  +K
Sbjct:   504 IKEIKEEIKEVKEEIKEEIKEEIKEVKEEIKEEIKEEIKEVKEEIKEVKEEIKEVKEEIK 563

Query:   115 KVSASMKEKISAATEEVKGTFRTGSTDTSAKHDDDVRDGFKASSGEEKQ-KQTVSSDTAE 173
             +V   +KE+I    EE+K   +    +   +  ++V++  K    E K+ K+ +  +  E
Sbjct:   564 EVKEEIKEEIKEVKEEIKEEIKEEIKEVKEEIKEEVKEEIKEVKEEIKEVKEEIKEEVKE 623

Query:   174 TFYGKLKSSISSPKFTLAFQKLKEAKVVDLAKKGYDIVKDELSGSPSKRKH---LEYTPS 230
                 ++K  I   K  +  +++KE K  ++ ++  + +K+E+     + K+    E T  
Sbjct:   624 EIK-EVKEEIKEVKEEIK-EEIKEVKE-EIKEEVKEEIKEEIKEIKEELKNDISSETTKE 680

Query:   231 PSWTGEKSTRTDLV-VTPSKKSMWSK-LKEK 259
                T  K   T+     P +  M+ + LKEK
Sbjct:   681 EKNTEHKKEETEKKKFIPKRVIMYQQELKEK 711

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0005737 "cytoplasm" evidence=NAS

GO:0016020 "membrane" evidence=NAS

UNIPROTKB|F1MSQ6 NEFH "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 137 (53.3 bits), Expect = 9.1e-06, P = 9.1e-06
 Identities = 77/284 (27%), Positives = 122/284 (42%)

Query:    56 IKGEAESNPEFKHSVKELKKKAEEIKG-VKEELK--ERTKQTTEQLYKQVDGVWMEAEST 112
             +K EA+S  + K  VKE  K  E+ K  VKEE K  E+ K   ++  K  +    +A+S 
Sbjct:   664 VKEEAKSPEKAKSPVKEEAKSPEKAKSPVKEEAKSPEKAKSPVKEEAKSPE----KAKSP 719

Query:   113 VKKVSASMKEKISAATEEVKGTFRTGSTDTSAKHDDDVRDGFKASS-GEEKQKQTVSSD- 170
             VK+ + S ++  S   EE K   +  S    AK  +  +   K  +   EK K  V  + 
Sbjct:   720 VKEEAKSPEKAKSPVKEEAKSPEKAKSP-VEAKSPEKAKSPAKEEAKSPEKAKSPVKEEA 778

Query:   171 -TAETFYGKLKSSISSPKFTLAFQKLKEAKVVDLAK---KGYDIVKDELSGSPSKRKHLE 226
              + E     +K    SP+   +  K +EAK  + AK   K    VK+E   SP K K   
Sbjct:   779 KSPEKAKSPVKEEAKSPEKAKSPAK-EEAKSPEKAKSPEKPKSPVKEEAK-SPEKPKSPV 836

Query:   227 YTPSPSWTGEKSTRTDLVVTPSKKSMWSKLKEKMQGYPVFKRITGISEPVVT--KGQEI- 283
                + S    KS   +   +P K     K + K  G  V K+    S PV    K QE+ 
Sbjct:   837 KEEAKSPEKPKSPVKEEAKSPEKAKSPVKDEAKAPGKEVPKKEEAKS-PVKEEEKPQEVR 895

Query:   284 AEDVRERWETSDNPIVHKIQDMNETIFQETDAAASIKEIRRRDP 327
             A++  ++ E    P + K ++  ++   E     + K   +++P
Sbjct:   896 AKEPPKKAEEEKAPAIPKAEEKKDSKKDEVPKKEAPKPEEKKEP 939

GO:0060052 "neurofilament cytoskeleton organization" evidence=IEA

GO:0045110 "intermediate filament bundle assembly" evidence=IEA

GO:0005883 "neurofilament" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0000226 "microtubule cytoskeleton organization" evidence=IEA

GO:0006334 "nucleosome assembly" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0000786 "nucleosome" evidence=IEA

UNIPROTKB|P12036 NEFH "Neurofilament heavy polypeptide" [Homo sapiens (taxid:9606)]

 Score = 126 (49.4 bits), Expect = 0.00014, P = 0.00014
 Identities = 75/281 (26%), Positives = 118/281 (41%)

Query:    57 KGEAESNPEFKHSVKELKKKAEEIKG---VKEELKERTKQTTEQLYKQVDGVWMEAESTV 113
             K EA+S PE K   KE  K   E+K     K   KE  K   E   K  +    +A+S V
Sbjct:   555 KEEAKSPPEAKSPEKEEAKSPAEVKSPEKAKSPAKEEAKSPAEA--KSPE----KAKSPV 608

Query:   114 KKVSASMKEKISAATEEVKGTFRTGSTDTS-AKHDDDVRDGFKASSGEE-KQKQTVSSDT 171
             K+ + S  E  S   EE K      S + + +   ++ +   KA S E+ K  +   + +
Sbjct:   609 KEEAKSPAEAKSPVKEEAKSPAEVKSPEKAKSPTKEEAKSPEKAKSPEKAKSPEKEEAKS 668

Query:   172 AETFYGKLKSSISSPKFTLAFQKLKEAKVVDLAKKGYDIVKDELSGSPSKRKHLEYTPSP 231
              E     +K+   SP+   +  K  EAK  + AK     VK+E   SP K K      + 
Sbjct:   669 PEKAKSPVKAEAKSPEKAKSPVKA-EAKSPEKAKSP---VKEEAK-SPEKAKSPVKEEAK 723

Query:   232 SWTGEKSTRTDLVVTPSK-KSMW---SKLKEKMQGYPVFKRITGISEPVVTKGQEIAEDV 287
             S    KS   +   TP K KS     +K  EK +     K +   S    T  +E A   
Sbjct:   724 SPEKAKSPVKEEAKTPEKAKSPVKEEAKSPEKAKSPEKAKTLDVKSPEAKTPAKEEARSP 783

Query:   288 RERW-ETSDNPIVHKIQDMNETIFQ-ETDAAASIKEIRRRD 326
              +++ E + +P+  +++   +     + DA A  KEI +++
Sbjct:   784 ADKFPEKAKSPVKEEVKSPEKAKSPLKEDAKAPEKEIPKKE 824

GO:0008219 "cell death" evidence=IEA

GO:0000226 "microtubule cytoskeleton organization" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0045110 "intermediate filament bundle assembly" evidence=IEA

GO:0060052 "neurofilament cytoskeleton organization" evidence=IEA

GO:0005883 "neurofilament" evidence=NAS

GO:0007399 "nervous system development" evidence=NAS

GO:0030424 "axon" evidence=TAS

GO:0003674 "molecular_function" evidence=ND

UNIPROTKB|Q9XJ56 ECPP44 "Phosphoprotein ECPP44" [Daucus carota (taxid:4039)]

 Score = 115 (45.5 bits), Expect = 0.00027, P = 0.00027
 Identities = 50/204 (24%), Positives = 94/204 (46%)

Query:    67 KHSVKELKKKAEEIKGV----KEELKERTKQTTEQLYKQVDGVWMEAESTVKKVSASMKE 122
             +HSV++  +     +G+    K+E K+ TK    +  ++V     E +    KV    +E
Sbjct:     9 QHSVEKTTEYESSDRGLFDFMKKEEKDETKVIATEFEEKVQVSEPEPKYEDCKVVEEEEE 68

Query:   123 KISAATEEVKGTFRTGSTDTSAKHDDDVRDGFKASSGEEKQKQTVSSDTAETFYGKLKSS 182
             K +A    ++   R+GS+ +S+  D++V +G      ++K+K+ +     E  + K +  
Sbjct:    69 K-AAKPSLLEKLHRSGSSSSSSSSDEEVEEG--GEKKKKKEKKGLKEKIEEKIHHK-EED 124

Query:   183 ISSPKFTLAFQKLKEAKVVDLAKKGY-DIVKDELSGSPSKRKHLEYTPSPSWTGEKSTRT 241
              S P      + + E +     KKG+ + +K++L G   K +     P P      +   
Sbjct:   125 TSVP-----VEVVTEPE----KKKGFMEKIKEKLPGGGKKVEEETVAPPPP---PAAAPV 172

Query:   242 DLVVT--PSKKSMWSKLKEKMQGY 263
             D  V   P+KK +  K+KEK+ GY
Sbjct:   173 DCAVEGDPAKKGILEKIKEKIPGY 196

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

UNIPROTKB|F1PZZ3 NEFH "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 122 (48.0 bits), Expect = 0.00040, P = 0.00040
 Identities = 72/248 (29%), Positives = 106/248 (42%)

Query:    35 VSANGYSSNRQFSVFKEFSKK-IKGEAESNPEFKHSVKELKKKAEEIKG-------VKEE 86
             V     S  +  S  KE +K  +K EA+S  + K  VKE  K  E+ K        VKEE
Sbjct:   620 VKEEAKSPEKAKSPVKEEAKSPVKEEAKSPEKTKSPVKEEAKSPEKAKSPEKAKSPVKEE 679

Query:    87 LK--ERTKQTTEQLYKQVDGVWMEAESTVKKVSASMKEKI-SAATEEVKGTFRTGS-TDT 142
              K  E+ K   ++  K  +    +A+S VK+ + S ++K  S   EE K   +  S    
Sbjct:   680 AKSPEKAKSPVKEEAKSPE----KAKSPVKEEAKSPEKKAKSPVKEEAKSPEKAKSPVKE 735

Query:   143 SAKHDDDVRDGFKASS-GEEKQKQTVSSD--TAETFYGKLKSSISSPKFTLAFQKLK--- 196
              AK  +  +   K  +   EK K  V  +  + E     +K    SP+   + +K K   
Sbjct:   736 EAKSPEKAKSPVKEEAKSPEKAKSPVKEEAKSPEKAKSPVKEEAKSPEKAKSPEKAKSPV 795

Query:   197 --EAKVVDLAK---KGYDIVKDELSGSPSKRKHLEYTPSPSWTGEKSTRTDLVVTPSKKS 251
               EAK  + AK   K    VK+E   SP K K  E   SP    E++   +  VT  K+ 
Sbjct:   796 KEEAKSPEKAKSPEKAKSPVKEEAK-SPEKAKSPEKVKSP--VKEETKAPEKEVT-KKEE 851

Query:   252 MWSKLKEK 259
               S +KE+
Sbjct:   852 AKSPIKEE 859

GO:0005882 "intermediate filament" evidence=IEA

UNIPROTKB|Q81YT0 BAS0520 "Putative internalin" [Bacillus anthracis (taxid:1392)]

 Score = 122 (48.0 bits), Expect = 0.00040, P = 0.00040
 Identities = 46/161 (28%), Positives = 81/161 (50%)

Query:    50 KEFSKKIKGEAES--NP--EFKHSVKELKKKAEEIKGVKEELKERTKQTT---EQLY--- 99
             KE +K+++G  E    P  E + S +E+K+ A+E++G KEE+KE TK+     E++    
Sbjct:   868 KEPAKEVEGSKEEPKEPAKEVEGSKEEVKEPAKEVEGPKEEVKEPTKEVEGPKEEVKEPT 927

Query:   100 KQVDGVWMEAESTVKKVSASMKEKISAATEEVKGTFR-TGSTDTSAKHDDDVRDGFKASS 158
             K+V+G   E +  +K+V  S KE++   T+E +G+        T  +   +V++  K   
Sbjct:   928 KEVEGPKEEVKEPMKEVEGS-KEEVKGPTKEAEGSKEEVKEPTTEVEGSKEVKEPGKEVE 986

Query:   159 GEEKQKQTVSSDTAETFYGKLKSSISSPKFTLAFQKLKEAK 199
             G  K     S+   ET    + + +   K  +  Q +KE K
Sbjct:   987 GS-KDAINQSAVAQET---NVNNQVGKEK-VVENQNMKENK 1022

GO:0003674 "molecular_function" evidence=ND

TIGR_CMR|BA_0552 BA_0552 "internalin, putative" [Bacillus anthracis str. Ames (taxid:198094)]

 Score = 122 (48.0 bits), Expect = 0.00040, P = 0.00040
 Identities = 46/161 (28%), Positives = 81/161 (50%)

Query:    50 KEFSKKIKGEAES--NP--EFKHSVKELKKKAEEIKGVKEELKERTKQTT---EQLY--- 99
             KE +K+++G  E    P  E + S +E+K+ A+E++G KEE+KE TK+     E++    
Sbjct:   868 KEPAKEVEGSKEEPKEPAKEVEGSKEEVKEPAKEVEGPKEEVKEPTKEVEGPKEEVKEPT 927

Query:   100 KQVDGVWMEAESTVKKVSASMKEKISAATEEVKGTFR-TGSTDTSAKHDDDVRDGFKASS 158
             K+V+G   E +  +K+V  S KE++   T+E +G+        T  +   +V++  K   
Sbjct:   928 KEVEGPKEEVKEPMKEVEGS-KEEVKGPTKEAEGSKEEVKEPTTEVEGSKEVKEPGKEVE 986

Query:   159 GEEKQKQTVSSDTAETFYGKLKSSISSPKFTLAFQKLKEAK 199
             G  K     S+   ET    + + +   K  +  Q +KE K
Sbjct:   987 GS-KDAINQSAVAQET---NVNNQVGKEK-VVENQNMKENK 1022

GO:0003674 "molecular_function" evidence=ND

GO:0009405 "pathogenesis" evidence=ISS

UNIPROTKB|J9P596 TRDN "Triadin" [Canis lupus familiaris (taxid:9615)]

 Score = 120 (47.3 bits), Expect = 0.00041, P = 0.00041
 Identities = 60/257 (23%), Positives = 110/257 (42%)

Query:    50 KEFSKKIKGEAESNPEFKHSVKELKKKAEEIKGVKEELKERTKQTTEQLYKQVDGVWME- 108
             KE SKK K   E +P+ K   K+ +KK + ++  K   KE +  + +Q+  + +    E 
Sbjct:   370 KEDSKKTKTPVEEHPKGK---KQ-EKKEKYVEPAKSSKKEHSAPSEKQVKAKTERAKEET 425

Query:   109 -AESTVKKVSASMKEKISAATEEVKGTFRTGSTDTSAKHDDDVRDGFKASSGEEKQKQT- 166
              A ST K V    +EK +   E+     ++G T T++K  + ++       G  K+K+  
Sbjct:   426 SAASTKKAVPGKKEEKTTKTVEQEIRKEKSGKTSTASKDKEPIKGKEVKVPGSLKEKEPE 485

Query:   167 VSSDTAETFYGKLKSSISSPKFTLAFQKLKEAKVVDLAKKGYDIVKDELSGSPSKRKHLE 226
             +  D       K +     P+  +  ++  E++V   AK   DI K E + S  K +  +
Sbjct:   486 IKKDEKMPKADK-EVKPKPPQSQVKKEEKSESQVKKEAKPEQDIAKPEKTVSHGKPEE-K 543

Query:   227 YTPSPSWTGEKSTRTDLVVTPSKKSMWSKLKEKMQGYPVFKRITGISEPVVTKGQEIAED 286
                    T + +    +   P+KK+   + KE     P  K  T   +P   +  E+ E 
Sbjct:   544 VVKQIKATEKAAIEKTVKPKPAKKAEHQE-KES----PTIK--TDKPKPTSKETPEVTES 596

Query:   287 VRERWETSDNPIVHKIQ 303
              +++ E S+     K +
Sbjct:   597 GKKKIEKSEKESKEKAE 613

GO:0016529 "sarcoplasmic reticulum" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0005102 "receptor binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q5XF06	TI442_ARATH	No assigned EC number	0.6163	0.9436	0.6780	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	337
PTZ00121	2084	PTZ00121, PTZ00121, MAEBL; Provisional	0.003

>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional

 Score = 39.4 bits (91), Expect = 0.003
 Identities = 50/180 (27%), Positives = 72/180 (40%), Gaps = 11/180 (6%)

Query: 50   KEFSKKIKGEAESNPEFKHSVKELKKKAEEIKGVKEELK--ERTKQTTEQLYKQVDGVWM 107
            KE +KK    A+   E K    E KKKAEE K   +ELK     K+  ++  K+ +    
Sbjct: 1373 KEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKK 1432

Query: 108  EAESTVKKVSASMKEKISAATEEVKGTFRTGSTDTSAKHDDDVRDGFKASSGEEKQKQTV 167
              E+  K   A   ++     EE K           AK  D+ +        EE +K   
Sbjct: 1433 ADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAK-----KKAEEAKKADE 1487

Query: 168  SSDTAETFYGK---LKSSISSPKFTLAFQKLKEAKVVDLAKKGYDIVK-DELSGSPSKRK 223
            +   AE    K    K +  + K     +K +EAK  D AKK  +  K DE   +  K+K
Sbjct: 1488 AKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKK 1547

Length = 2084

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	337
KOG2580	459	consensus Mitochondrial import inner membrane tran	100.0
TIGR00984	378	3a0801s03tim44 mitochondrial import inner membrane	100.0
PF07464	155	ApoLp-III: Apolipophorin-III precursor (apoLp-III)	91.79
KOG2580	459	consensus Mitochondrial import inner membrane tran	87.19

>KOG2580 consensus Mitochondrial import inner membrane translocase, subunit TIM44 [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1.5e-50  Score=398.84  Aligned_cols=268  Identities=27%  Similarity=0.418  Sum_probs=229.9

Q ss_pred             cCcccccccccccCCC-CCCCcchHHHHHHHHHHHhhhChhhHHHHHHHHHHHHHHhhhHHHHHHhhHHHHHHHHHhhhh
Q 019648           26 QGSSTRLRLVSANGYS-SNRQFSVFKEFSKKIKGEAESNPEFKHSVKELKKKAEEIKGVKEELKERTKQTTEQLYKQVDG  104 (337)
Q Consensus        26 ~~~~~~~~~~~~~~ys-~~rr~gffs~f~~niK~E~~KNkEmkesiKkfreea~kLe~s~eaLK~~~k~~a~~~~k~v~~  104 (337)
                      +++..|+.+.+.++|| ++||+|||++|+||||+||+||||||+|||+|++++++|++| |+||     .||++|..+  
T Consensus        41 ~~~~ar~~~~q~~~yss~~~r~s~ls~f~dn~r~E~~knkElqe~iK~lkd~a~~L~es-da~k-----kaR~k~~~~--  112 (459)
T KOG2580|consen   41 TRLGARLPFSQTRGYSSPGRRRSFLSEFSDNVRAELDKNKELQESIKKLKDRAGELEES-DALK-----KARTKYETA--  112 (459)
T ss_pred             hcccccccccccccccCCCCCCchHHHHHHHHHHHHhhCHHHHHHHHHHHHHHhhhccc-hHHH-----HHHHHHHHH--
Confidence            4688999999999999 589999999999999999999999999999999999999997 9998     499999999  


Q ss_pred             hhhhhhhhHHHHHHHHHHHHHHHHHHhhhhccCCCCCccccCCCccccccccCcc-hhhh-hhccccchhhhhhhccccc
Q 019648          105 VWMEAESTVKKVSASMKEKISAATEEVKGTFRTGSTDTSAKHDDDVRDGFKASSG-EEKQ-KQTVSSDTAETFYGKLKSS  182 (337)
Q Consensus       105 v~~eae~~a~Kvs~~vKeKi~~~~e~vke~~~~~kee~s~~td~~~e~gkk~~~~-ee~~-~a~~s~~~aes~~~k~kst  182 (337)
                           +++++++|..++.+++++.+.|+...    +|+++ +++    |++.+++ ++.+ +|.++++.-+++|+||++|
T Consensus       113 -----e~~t~~~s~~~kk~~~e~~e~~k~~~----~ea~e-S~~----~k~t~~~~~e~~kqA~~sae~vd~~~~kv~~T  178 (459)
T KOG2580|consen  113 -----ESETQASSEVLKKKLGELKETVKLGA----EEAWE-SAL----GKKTKEAVEEAQKQASGSAEEVDTFFEKVGQT  178 (459)
T ss_pred             -----HhhhhhhhHHHHHHHHHHHHHHHHHH----HHHHh-hhh----hccchhhHHHHHHHhhcchhhhhHhhhhhhhh
Confidence                 58899999999999998888777666    89998 666    8888876 4444 7999999999999999988


Q ss_pred             cCCccchHHHHHHHHHHHHHHhhhhhhhhhhhccCCCCcccccCCCCCCCCCCC-CCccceeEEecC--ccchhHHHHHh
Q 019648          183 ISSPKFTLAFQKLKEAKVVDLAKKGYDIVKDELSGSPSKRKHLEYTPSPSWTGE-KSTRTDLVVTPS--KKSMWSKLKEK  259 (337)
Q Consensus       183 is~~k~s~af~~l~~a~~~~~~skg~~~VkeEl~~~p~~rKr~~~~~~~~~~~e-~s~~T~lVl~~~--k~s~W~kfkek  259 (337)
                      ...+.+|..|..|++  -.|.++.|..+|++++...|++.++.+..+++++++| |.++++||+|++  ..++|++|||+
T Consensus       179 ~~yk~vSe~~~~vkk--~~d~s~~g~~i~k~~~r~lr~r~~~~~~~~~~~~~~E~n~~a~~vv~h~~skw~~kwe~fkek  256 (459)
T KOG2580|consen  179 AAYKAVSEVMETVKK--EIDSSRYGLDIVKERPRKLRKRTEFLGDTFPSEKVGEPNEEAEGVVLHKDSKWYQKWEDFKEK  256 (459)
T ss_pred             hhHHHHHHHHHhhcc--cchhhhhhhhchhhhhhhchhhhhhhccCCCcccccCCCcceeeEEeccchHHHHHHHHHHhc
Confidence            888888888887763  6777777777888877777777777777777788997 666899999843  22445559998


Q ss_pred             ccCCcchhhhcccCccccchhhhhhHHHHHHHhhcCchhh-------HhhhhccccccccchHHHHHHHHHhcCCCCccc
Q 019648          260 MQGYPVFKRITGISEPVVTKGQEIAEDVRERWETSDNPIV-------HKIQDMNETIFQETDAAASIKEIRRRDPYDHVF  332 (337)
Q Consensus       260 ~~~~Pv~k~l~~~~n~v~~K~~e~~edlke~wEeSDNP~V-------~kI~dv~~~lF~ETE~a~v~rEIr~~DPsF~~~  332 (337)
                                    |.||++++    +|+..||+||||+|       ++|.++++|||++||+++||+||++|||+| +.
T Consensus       257 --------------~~~~~k~~----~lk~~ydeseN~~i~~~rdvtdki~~~~~g~fsktE~Sev~tei~~iDPsF-~~  317 (459)
T KOG2580|consen  257 --------------NVVVRKFQ----ELKKKYDESENPSIRASRDVTDKITDVDGGLFSKTEMSEVLTEIKKIDPSF-DK  317 (459)
T ss_pred             --------------ccchHHHH----HHHhhccccccHHHHHHHHHHHhhhhcccccchhhHHHHHHHHHHhcCCCC-Cc
Confidence                          78888887    99999999999999       688888889999999999999999999999 66


Q ss_pred             cccC
Q 019648          333 FDFC  336 (337)
Q Consensus       333 ~~F~  336 (337)
                      .+|+
T Consensus       318 ~~Fl  321 (459)
T KOG2580|consen  318 EDFL  321 (459)
T ss_pred             HHHH
Confidence            6654

>TIGR00984 3a0801s03tim44 mitochondrial import inner membrane, translocase subunit

Probab=100.00  E-value=1.8e-40  Score=326.38  Aligned_cols=224  Identities=18%  Similarity=0.285  Sum_probs=177.9

Q ss_pred             HHHHHHhhhChhhHHHHHHHHHHHHHHhhhHHHHHHhhHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHhhh
Q 019648           54 KKIKGEAESNPEFKHSVKELKKKAEEIKGVKEELKERTKQTTEQLYKQVDGVWMEAESTVKKVSASMKEKISAATEEVKG  133 (337)
Q Consensus        54 ~niK~E~~KNkEmkesiKkfreea~kLe~s~eaLK~~~k~~a~~~~k~v~~v~~eae~~a~Kvs~~vKeKi~~~~e~vke  133 (337)
                      ||||+|+.||+|||+|||+|++++.+|++| ||||     .||++|+.++       +++.++|..+++.|..+.+.|.+
T Consensus         1 d~~k~E~~kskE~~enik~l~~~~~~~~es-ea~k-----~ar~~y~~~~-------~~~~~~s~~~~~~l~~~~~~v~~   67 (378)
T TIGR00984         1 DTFRDELQKSQELQESIKQLQDRSGKLNES-DALK-----KARKAYEKAE-------SGTLKSSEVVGKTLGKLGDTMKK   67 (378)
T ss_pred             CchHHHHHhhHHHHHHHHHHHHHHhhhhhh-HHHH-----HHHHHHHHHh-------cccchhhHHHHHHHHHHHHHHHH
Confidence            589999999999999999999999999996 9998     5999999994       77889999999999999999998


Q ss_pred             hccCCCCCccccCCCccccccccCcchhhh-hhccccchhhhhhhccccccCCccchHHHHHHHHHHHHHHhhhhhhhhh
Q 019648          134 TFRTGSTDTSAKHDDDVRDGFKASSGEEKQ-KQTVSSDTAETFYGKLKSSISSPKFTLAFQKLKEAKVVDLAKKGYDIVK  212 (337)
Q Consensus       134 ~~~~~kee~s~~td~~~e~gkk~~~~ee~~-~a~~s~~~aes~~~k~kstis~~k~s~af~~l~~a~~~~~~skg~~~Vk  212 (337)
                      ..    .++.+ ++.    ||+.+.+  .. .++++   |+.             .+.+|+.|++|.+++.++++++.+|
T Consensus        68 ~~----~~~~~-s~~----~k~~~~~--~~~ta~~~---~~~-------------~~~~~~~v~~T~~yk~vs~~~~~~k  120 (378)
T TIGR00984        68 MA----HKAWE-SEL----GKKMKKA--GAETAKTA---AEH-------------VDKSAEPVRDTAVYKHVSQSMKDGK  120 (378)
T ss_pred             HH----HHHhh-cHH----HHHHHHH--HHHHhhhh---hhh-------------HHHhcccccccHHHHHHHHHHHhhh
Confidence            87    67775 555    6664322  11 22222   233             5889999999999999999999999


Q ss_pred             hhccC----------CC-CcccccCCCC-CCCCCC-CCCccceeEEecC--ccchhHHHHHhccCCcchhhhcccCcccc
Q 019648          213 DELSG----------SP-SKRKHLEYTP-SPSWTG-EKSTRTDLVVTPS--KKSMWSKLKEKMQGYPVFKRITGISEPVV  277 (337)
Q Consensus       213 eEl~~----------~p-~~rKr~~~~~-~~~~~~-e~s~~T~lVl~~~--k~s~W~kfkek~~~~Pv~k~l~~~~n~v~  277 (337)
                      ++++.          .| .+|+|.+..+ ...+++ +|+++|+|+||++  ..++|+.||++   +|++++|+       
T Consensus       121 ~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~n~~a~~v~~~k~s~~~~~w~~fk~~---~~~~~~~~-------  190 (378)
T TIGR00984       121 DSSRYGFIADKEQRRRPRELTKRTDGRDFAKSRVVEANESVTDVVLHSDSSWYSKVEDFKES---NVVYRKIQ-------  190 (378)
T ss_pred             cccccccccchhhhhhHHHhhhhhcccccccccccccCCcccceEEecccHHHHHHHHHHhh---CHHHHHHH-------
Confidence            98885          12 2466655443 234566 4788999999943  23555669997   56666655       


Q ss_pred             chhhhhhHHHHHHHhhcCchhhHhhhh-------ccccccccchHHHHHHHHHhcCCCCccccccC
Q 019648          278 TKGQEIAEDVRERWETSDNPIVHKIQD-------MNETIFQETDAAASIKEIRRRDPYDHVFFDFC  336 (337)
Q Consensus       278 ~K~~e~~edlke~wEeSDNP~V~kI~d-------v~~~lF~ETE~a~v~rEIr~~DPsF~~~~~F~  336 (337)
                              |||++|||||||||+.+|+       ++++||+||++|.+|++|+++||+| +..+|+
T Consensus       191 --------~lk~~~~eSeNp~i~~~r~itdkv~~~~~~lF~ete~a~~l~eIk~~DPsF-d~~~Fl  247 (378)
T TIGR00984       191 --------ELKKKYDESENPLVRMMRGVTDKIGGVFSGMFSETEVSEVLTEFKKIDPTF-DKEHFL  247 (378)
T ss_pred             --------HHHHHhhcccChhhhHhHHhhhhhhhhhhcccCCCHHHHHHHHHHHhCCCC-CHHHHH
Confidence                    9999999999999975554       5667999999999999999999999 777774

translocase (Tom) import receptor, five proteins of the Tom channel complex, five proteins of the inner membrane translocase (Tim) and three "motor" proteins. This family is specific for the Tim proteins.

>PF07464 ApoLp-III: Apolipophorin-III precursor (apoLp-III); InterPro: IPR010009 This family consists of several insect apolipoprotein-III sequences

Probab=91.79  E-value=0.2  Score=45.00  Aligned_cols=37  Identities=30%  Similarity=0.557  Sum_probs=30.3

Q ss_pred             HHHHHHHHHHHhhh-ChhhHHHHHHHHHHHHHHhhhHHHHH
Q 019648           49 FKEFSKKIKGEAES-NPEFKHSVKELKKKAEEIKGVKEELK   88 (337)
Q Consensus        49 fs~f~~niK~E~~K-NkEmkesiKkfreea~kLe~s~eaLK   88 (337)
                      ++.++.+|.+|+.+ ||++.+.++.|+.+   |++.-+.|+
T Consensus        43 l~~~~~~l~eeik~~n~~~~e~l~~~~~k---l~et~~~L~   80 (155)
T PF07464_consen   43 LQNVSSSLQEEIKDANPEAEEALKQLKTK---LEETAEKLR   80 (155)
T ss_dssp             HHHHHHHHHHHHTT-SSTHHHHHHHHHHH---HHHHHHGGG
T ss_pred             HHHHHHHHHHHHHhcChhHHHHHHHHHHH---HHHHHHHHH
Confidence            56788999999999 99999999999887   555544554

Exchangeable apolipoproteins constitute a functionally important family of proteins that play critical roles in lipid transport and lipoprotein metabolism. Apolipophorin III (apoLp-III) is a prototypical exchangeable apolipoprotein found in many insect species that functions in transport of diacylglycerol (DAG) from the fat body lipid storage depot to flight muscles in the adult life stage [].; GO: 0008289 lipid binding, 0006869 lipid transport, 0005576 extracellular region; PDB: 1EQ1_A.

>KOG2580 consensus Mitochondrial import inner membrane translocase, subunit TIM44 [Intracellular trafficking, secretion, and vesicular transport]

Probab=87.19  E-value=0.48  Score=48.94  Aligned_cols=80  Identities=18%  Similarity=0.227  Sum_probs=52.7

Q ss_pred             chHHHHHHHHH--HHhhhC-hhhHHHHHHHHHHHHHHhhhHHHHHHhhHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHH
Q 019648           47 SVFKEFSKKIK--GEAESN-PEFKHSVKELKKKAEEIKGVKEELKERTKQTTEQLYKQVDGVWMEAESTVKKVSASMKEK  123 (337)
Q Consensus        47 gffs~f~~niK--~E~~KN-kEmkesiKkfreea~kLe~s~eaLK~~~k~~a~~~~k~v~~v~~eae~~a~Kvs~~vKeK  123 (337)
                      +|+-+|-.-+.  .|++.| ++||+...+|.| -..|+.+-+      |+++.+.|.+..+      ..+++.++-++++
T Consensus        67 ~f~dn~r~E~~knkElqe~iK~lkd~a~~L~e-sda~kkaR~------k~~~~e~~t~~~s------~~~kk~~~e~~e~  133 (459)
T KOG2580|consen   67 EFSDNVRAELDKNKELQESIKKLKDRAGELEE-SDALKKART------KYETAESETQASS------EVLKKKLGELKET  133 (459)
T ss_pred             HHHHHHHHHHhhCHHHHHHHHHHHHHHhhhcc-chHHHHHHH------HHHHHHhhhhhhh------HHHHHHHHHHHHH
Confidence            45554444333  455554 688888888844 455655432      3468888888874      5566666778888


Q ss_pred             HHHHHHHhhhhccCCC
Q 019648          124 ISAATEEVKGTFRTGS  139 (337)
Q Consensus       124 i~~~~e~vke~~~~~k  139 (337)
                      |....+++.++..+++
T Consensus       134 ~k~~~~ea~eS~~~k~  149 (459)
T KOG2580|consen  134 VKLGAEEAWESALGKK  149 (459)
T ss_pred             HHHHHHHHHhhhhhcc
Confidence            8888888888864444

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	337
3qk9_A	222	Mitochondrial import inner membrane translocase S	1e-07
2cw9_A	194	Translocase of inner mitochondrial membrane; struc	1e-06

>3qk9_A Mitochondrial import inner membrane translocase S TIM44; mitochondrion, protein transport; 3.10A {Saccharomyces cerevisiae} PDB: 2fxt_A Length = 222

 Score = 50.4 bits (120), Expect = 1e-07
 Identities = 13/51 (25%), Positives = 25/51 (49%), Gaps = 3/51 (5%)

Query: 280 GQEIAEDVRERWETSDNPIV---HKIQDMNETIFQETDAAASIKEIRRRDP 327
           G+ I     + W+ S+NP++    KI +     F ET+++    + +  DP
Sbjct: 23  GRSIQSLKNKLWDESENPLIVVMRKITNKVGGFFAETESSRVYSQFKLMDP 73

>2cw9_A Translocase of inner mitochondrial membrane; structure genomics, TIM, structural genomics, NPPFSA, riken structural genomics/proteomics initiative; HET: 1PE; 1.90A {Homo sapiens} SCOP: d.17.4.13 Length = 194

 Score = 47.1 bits (111), Expect = 1e-06
 Identities = 12/47 (25%), Positives = 21/47 (44%), Gaps = 7/47 (14%)

Query: 288 RERWETSDNPIV-------HKIQDMNETIFQETDAAASIKEIRRRDP 327
               + SDN  +        K+ D+   +F +T+ +  + EI R DP
Sbjct: 4   GSSGDESDNAFIRASRALTDKVTDLLGGLFSKTEMSEVLTEILRVDP 50

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	337
3qk9_A	222	Mitochondrial import inner membrane translocase S	99.67
2cw9_A	194	Translocase of inner mitochondrial membrane; struc	97.41

>3qk9_A Mitochondrial import inner membrane translocase S TIM44; mitochondrion, protein transport; 3.10A {Saccharomyces cerevisiae} PDB: 2fxt_A

Probab=99.67  E-value=3.1e-18  Score=157.51  Aligned_cols=69  Identities=22%  Similarity=0.386  Sum_probs=37.3

Q ss_pred             ccchhHHHHHhccCCcchhhhcccCccccchhhhhhHHHHHH-HhhcCchhhHhhhhccc---cccccchHHHHHHHHHh
Q 019648          249 KKSMWSKLKEKMQGYPVFKRITGISEPVVTKGQEIAEDVRER-WETSDNPIVHKIQDMNE---TIFQETDAAASIKEIRR  324 (337)
Q Consensus       249 k~s~W~kfkek~~~~Pv~k~l~~~~n~v~~K~~e~~edlke~-wEeSDNP~V~kI~dv~~---~lF~ETE~a~v~rEIr~  324 (337)
                      ...+|.+||++   ||++++|+               |||++ |||||||+|+++++|+|   |||++||++.+|++|++
T Consensus         9 ~~~~w~~fk~~---~~~~~~~~---------------~~k~~~~~es~np~i~~~r~itd~v~~~f~~te~a~~l~~Ik~   70 (222)
T 3qk9_A            9 FGKKVEDFKEK---TVVGRSIQ---------------SLKNKLWDESENPLIVVMRKITNKVGGFFAETESSRVYSQFKL   70 (222)
T ss_dssp             ---------------------C---------------HHHHHHHHHCCCHHHHHHHHHCC---------CCHHHHTTCC-
T ss_pred             HHHHHHHHhhc---CHHHHHHH---------------HHHhhhcccccCHHHHHHHHHHHhcccccCCCHHHHHHHHHHH
Confidence            34678889997   77777776               99999 99999999999999998   69999999999999999


Q ss_pred             cCCCCccccccC
Q 019648          325 RDPYDHVFFDFC  336 (337)
Q Consensus       325 ~DPsF~~~~~F~  336 (337)
                      +||+| +..+|+
T Consensus        71 ~DPsF-~~~~Fl   81 (222)
T 3qk9_A           71 MDPTF-SNESFT   81 (222)
T ss_dssp             ----C-CHHHHH
T ss_pred             hCCCC-CHHHHH
Confidence            99999 777774

>2cw9_A Translocase of inner mitochondrial membrane; structure genomics, TIM, structural genomics, NPPFSA, riken structural genomics/proteomics initiative; HET: 1PE; 1.90A {Homo sapiens} SCOP: d.17.4.13

Probab=97.41  E-value=3.2e-05  Score=68.88  Aligned_cols=31  Identities=29%  Similarity=0.449  Sum_probs=29.6

Q ss_pred             hHhhhhccccccccchHHHHHHHHHhcCCCC
Q 019648          299 VHKIQDMNETIFQETDAAASIKEIRRRDPYD  329 (337)
Q Consensus       299 V~kI~dv~~~lF~ETE~a~v~rEIr~~DPsF  329 (337)
                      .+||+|+++|||++|+.+.+|++|+++||+|
T Consensus        22 ~~~~~~~~~~~f~~s~~~~~l~~i~~~dp~F   52 (194)
T 2cw9_A           22 TDKVTDLLGGLFSKTEMSEVLTEILRVDPAF   52 (194)
T ss_dssp             HHHHHHHTCCTTHHHHHHHHHHHHHHHCTTC
T ss_pred             hhhhhhhhccccCCCHHHHHHHHHHhhCCCC
Confidence            3599999999999999999999999999999

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	337
d2fxta1	192	d.17.4.13 (A:234-425) Translocase of inner mitocho	1e-07
d2cw9a1	182	d.17.4.13 (A:270-451) Translocase of inner mitocho	0.001

>d2fxta1 d.17.4.13 (A:234-425) Translocase of inner mitochondrial membrane TIMM44 (TIM44), C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 192

class: Alpha and beta proteins (a+b)
fold: Cystatin-like
superfamily: NTF2-like
family: TIM44-like
domain: Translocase of inner mitochondrial membrane TIMM44 (TIM44), C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 49.2 bits (117), Expect = 1e-07
 Identities = 11/47 (23%), Positives = 25/47 (53%), Gaps = 4/47 (8%)

Query: 285 EDVRER-WETSDNPIV---HKIQDMNETIFQETDAAASIKEIRRRDP 327
           + ++ + W+ S+NP++    KI +     F ET+++    + +  DP
Sbjct: 3   QSLKNKLWDESENPLIVVMRKITNKVGGFFAETESSRVYSQFKLMDP 49

>d2cw9a1 d.17.4.13 (A:270-451) Translocase of inner mitochondrial membrane TIMM44 (TIM44), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 182

class: Alpha and beta proteins (a+b)
fold: Cystatin-like
superfamily: NTF2-like
family: TIM44-like
domain: Translocase of inner mitochondrial membrane TIMM44 (TIM44), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.9 bits (85), Expect = 0.001
 Identities = 9/30 (30%), Positives = 17/30 (56%)

Query: 298 IVHKIQDMNETIFQETDAAASIKEIRRRDP 327
           +  K+ D+   +F +T+ +  + EI R DP
Sbjct: 10  LTDKVTDLLGGLFSKTEMSEVLTEILRVDP 39

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00