Citrus Sinensis ID: 019657

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------
Protein Sequence
MSTERHASSSTSASPEENAMFLDILHEAPLLGHRKSHSIFGSVVYCFVLAGYAILAAGTTWIFHPIHYLIPPLLCSCGVILLALTGIFQQYFVYQVQKIRLQGYYSFSQKLKHIVRLPFAITAYGTAAMLLVIVWRPHISILSISTLLRIIMLIEAICAASFMSVYIGYVHQYNSLNSQPDVMKSLYSPLQPSSSLEGLRYHDGGRLSDEQMALLQYQRENLHFLSEEILRLQECLSKYEQSDDGSTPQVDLAHLLAARDQELRTLSAEMNQLQSELRLARSFVAEREAEVLRVRNTNNQLERALEVERMSNIELQKKISTRRNQHGPAESNEHDTA
Secondary Structure (PSIPRED)
cccccccccccccccccccHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccHHHcHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHccHHHcccHcccccHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHcccccccccccccEEcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccc
Coil and Loop (DISEMBL)
msterhassstsaspeenAMFLDILheapllghrkshsifGSVVYCFVLAGYAILAAgttwifhpihylippllcSCGVILLALTGIFQQYFVYQVQKIRLQGYYSFSQKLKHIVRLPFAITAYGTAAMLLVIVWRPHISILSISTLLRIIMLIEAICAASFMSVYIGYVHQynslnsqpdvmkslysplqpsssleglryhdggrlSDEQMALLQYQRENLHFLSEEILRLQECLSKyeqsddgstpqVDLAHLLAARDQELRTLSAEMNQLQSELRLARSFVAEREAEVLRVRNTNNQLERALEVERMSNIELQKKISTrrnqhgpaesnehdta
Flexible Loop (DISEMBL)
msterhassstsaspeeNAMFLDILHEAPLLGHRKSHSIFGSVVYCFVLAGYAILAAGTTWIFHPIHYLIPPLLCSCGVILLALTGIFQQYFVYQVQKIRLQGYYSFSQKLKHIVRLPFAITAYGTAAMLLVIVWRPHISILSISTLLRIIMLIEAICAASFMSVYIGYVHQYNSLNSQPDVMKSLYSPLQPSSSLEGLRYHDGGRLSDEQMALLQYQRENLHFLSEEILRLQECLSKYEQSDDGSTPQVDLAHLLAARDQELRTLSAEMNQLQSELRLARSFVAEReaevlrvrntnnqleralevermsnielqkkistrrnqhgpaesnehdta
Low Complexity Region (SEG)
MSTERHASSSTSASPEENAMFLDILHEAPLLGHRKSHSIFGSVVYCFVLAGYAILAAGTTWIFHPIHYLIPPLLCSCGVILLALTGIFQQYFVYQVQKIRLQGYYSFSQKLKHIVRLPFAITAYGTAAMLLVIVWRPHisilsistllriimliEAICAASFMSVYIGYVHQYNSLNSQPDVMKslysplqpssslEGLRYHDGGRLSDEQMALLQYQRENLHFLSEEILRLQECLSKYEQSDDGSTPQVDLAHLLAARDQELRTLSAEMNQLQSELRLARSFVAEREAEVLRVRNTNNQLERALEVERMSNIELQKKISTRRNQHGPAESNEHDTA
Disordered region (IsUnstruct)
*******************MFLDILHEAPLLGHRKSHSIFGSVVYCFVLAGYAILAAGTTWIFHPIHYLIPPLLCSCGVILLALTGIFQQYFVYQVQKIRLQGYYSFSQKLKHIVRLPFAITAYGTAAMLLVIVWRPHISILSISTLLRIIMLIEAICAASFMSVYIGYVHQYNSL***********************************MALLQYQRENLHFLSEEILRLQECLSK***************************************************************************************************
Disordered Region (DISOPRED)
*******************MFLDILHEAPLLGHRKSHSIFGSVVYCFVLAGYAILAAGTTWIFHPIHYLIPPLLCSCGVILLALTGIFQQYFVYQVQKIRLQGYYSFSQKLKHIVRLPFAITAYGTAAMLLVIVWRPHISILSISTLLRIIMLIEAICAASFMSVYIGYVHQYNSLNSQPDVMKSLYS**********************QMALLQYQRENLHFLSEEIL**********************AHLLAARDQ****************************************************************************
Disordered Region (DISEMBL)
***************EENAMFLDILHEAPLLGHRKSHSIFGSVVYCFVLAGYAILAAGTTWIFHPIHYLIPPLLCSCGVILLALTGIFQQYFVYQVQKIRLQGYYSFSQKLKHIVRLPFAITAYGTAAMLLVIVWRPHISILSISTLLRIIMLIEAICAASFMSVYIGYVHQYNSLNSQPDVMKSLYSPLQPSSSLEGLRYHDGGRLSDEQMALLQYQRENLHFLSEEILRLQECLSKY*********QVDLAHLLAARDQELRTLSAEMNQLQSELRLARSFVAEREAEVLRVRNTNNQLERALEVERMSNIELQKKI******************
Disordered Region (DISPRO)
****************ENAMFLDILHEAPLLGHRKSHSIFGSVVYCFVLAGYAILAAGTTWIFHPIHYLIPPLLCSCGVILLALTGIFQQYFVYQVQKIRLQGYYSFSQKLKHIVRLPFAITAYGTAAMLLVIVWRPHISILSISTLLRIIMLIEAICAASFMSVYIGYVHQYNSLNSQPDVMKSLYSPLQPSSSLEGLRYHDGGRLSDEQMALLQYQRENLHFLSEEILRLQECLSKYEQSDDGSTPQVDLAHLLAARDQELRTLSAEMNQLQSELRLARSFVAEREAEVLRVRNTNNQLERALEVERMSNIELQKKISTR***************
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSTERHASSSTSASPEENAMFLDILHEAPLLGHRKSHSIFGSVVYCFVLAGYAILAAGTTWIFHPIHYLIPPLLCSCGVILLALTGIFQQYFVYQVQKIRLQGYYSFSQKLKHIVRLPFAITAYGTAAMLLVIVWRPHISILSISTLLRIIMLIEAICAASFMSVYIGYVHQYNSLNSQPDVMKSLYSPLQPSSSLEGLRYHDGGRLSDEQMALLQYQRENLHFLSEEILRLQECLSKYEQSDDGSTPQVDLAHLxxxxxxxxxxxxxxxxxxxxxLRLARSFxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxISTRRNQHGPAESNEHDTA
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	337	2.2.26 [Sep-21-2011]
Q5U1Y0	266	Transmembrane protein 192	yes	no	0.311	0.394	0.293	5e-06
Q6NYE7	271	Transmembrane protein 192	yes	no	0.445	0.553	0.3	6e-06
Q9CXT7	266	Transmembrane protein 192	yes	no	0.454	0.575	0.262	1e-05

>sp|Q5U1Y0|TM192_RAT Transmembrane protein 192 OS=Rattus norvegicus GN=Tmem192 PE=2 SV=1

 Score = 52.4 bits (124), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 32/109 (29%), Positives = 59/109 (54%), Gaps = 4/109 (3%)

Query: 79  VILLALTGIFQQYFVYQVQKIRLQGYYSFSQKLKHIVRLPFAITAYGTAAMLLVIVWR-- 136
           VIL  L  +F++Y  Y  +K+R +GY    +  +H+  L   I + G  A+LL++  +  
Sbjct: 101 VILWILHLLFERYIQYHHRKVRSRGYSQIYRSTRHLKALALTIHSSGNTALLLLLCVQYS 160

Query: 137 -PHISILSISTLLRIIMLIEAICAASFMSVYIGYVHQYNSLNSQPDVMK 184
            P  + L +  +L ++ L E IC+ S + +Y   + ++N    QPDV++
Sbjct: 161 FPEPNKLYLELILAVLAL-ELICSLSCLVLYTVKIRRFNKAKPQPDVLE 208

Rattus norvegicus (taxid: 10116)

>sp|Q6NYE7|TM192_DANRE Transmembrane protein 192 OS=Danio rerio GN=tmem192 PE=2 SV=1

 Score = 52.0 bits (123), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 51/170 (30%), Positives = 79/170 (46%), Gaps = 20/170 (11%)

Query: 79  VILLALTGIFQQYFVYQ--VQK----IRLQGYYSFSQKLKHIVRLPFAITAYGTAAMLLV 132
           V+LL    ++   F+Y   VQ+    +R +GY  F +  K I  LP  I + G AA+L V
Sbjct: 99  VVLLGKVALWVVVFIYDRVVQRRHSAVRRKGYLDFYRMTKGIKSLPLLIHSAGNAAILTV 158

Query: 133 I----VWRPHISILSISTLLRII---MLIEAICAASFMSVYIGYVHQYNSLNSQPDVMKS 185
           I    +   ++  LS+  LL II   +L+  IC    +  Y  +V ++N     PDV + 
Sbjct: 159 IAPSSLLDANVKNLSVYLLLAIICLELLLTIIC----LLRYTVHVVKFNRKKPHPDVTEE 214

Query: 186 LYSPLQPSSSLEGLRYHDGGRLSD---EQMALLQYQRENLHFLSEEILRL 232
             S    S +     + DG  L D   +Q  L+ Y +++   LS  IL L
Sbjct: 215 ERSYGCSSDAHTETGFRDGSSLEDVVEKQADLIDYLKQHNSVLSRRILTL 264

Danio rerio (taxid: 7955)

>sp|Q9CXT7|TM192_MOUSE Transmembrane protein 192 OS=Mus musculus GN=Tmem192 PE=1 SV=1

 Score = 51.2 bits (121), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 42/160 (26%), Positives = 82/160 (51%), Gaps = 7/160 (4%)

Query: 79  VILLALTGIFQQYFVYQVQKIRLQGYYSFSQKLKHIVRLPFAITAYGTAAMLLVIVWR-- 136
           +IL  L  +F++Y  Y  +K+R +GY    +  +H+  L   I + G  A+LL++  +  
Sbjct: 101 LILWILHLLFERYVQYHHRKVRSRGYSQIYRSTRHLKTLALTIHSSGNTALLLLLCVQHS 160

Query: 137 -PHISILSISTLLRIIMLIEAICAASFMSVYIGYVHQYNSLNSQPDVM--KSLYSPLQPS 193
            P  S L +  +L ++ L E IC+ S + +YI  + ++N     PDV+  + +Y+    +
Sbjct: 161 FPEPSKLYLELILAVLAL-ELICSLSCLILYIVKIRRFNRAKPLPDVLEEEKIYAYPSNT 219

Query: 194 SSLEGLRYHDG-GRLSDEQMALLQYQRENLHFLSEEILRL 232
           +S  G R       + ++Q  ++ Y + +   LS+ +L L
Sbjct: 220 ASETGFRTVSSLEEIVEKQEDIIVYLKRHNALLSKRLLEL 259

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	337
297738563	353	unnamed protein product [Vitis vinifera]	0.967	0.923	0.770	1e-153
118482875	356	unknown [Populus trichocarpa]	0.985	0.932	0.760	1e-152
224141619	356	predicted protein [Populus trichocarpa]	0.985	0.932	0.757	1e-151
356556392	356	PREDICTED: uncharacterized protein LOC10	0.985	0.932	0.713	1e-143
449452570	357	PREDICTED: uncharacterized protein LOC10	0.985	0.929	0.711	1e-142
356530429	356	PREDICTED: uncharacterized protein LOC10	0.982	0.929	0.721	1e-142
18396221	355	FRIGIDA interacting protein 1 [Arabidops	0.958	0.909	0.749	1e-142
255550447	356	conserved hypothetical protein [Ricinus	0.991	0.938	0.715	1e-142
297831684	355	hypothetical protein ARALYDRAFT_319341 [	0.958	0.909	0.743	1e-140
297812241	348	hypothetical protein ARALYDRAFT_488961 [	0.970	0.939	0.668	1e-130

>gi|297738563|emb|CBI27808.3| unnamed protein product [Vitis vinifera]

 Score =  547 bits (1410), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 268/348 (77%), Positives = 295/348 (84%), Gaps = 22/348 (6%)

Query: 1   MSTERHASSSTSASPEENAMFLDILHEAPLLGHRKSHSIFGSVVYCFVLAGYAILAAGTT 60
           MSTERH SS+TS SPEEN +FLD+LHEAPL GHRK  SI GSV YCF+LA YAILA    
Sbjct: 1   MSTERH-SSATSTSPEENTLFLDVLHEAPLFGHRKPTSIIGSVFYCFLLASYAILAVAAP 59

Query: 61  WIFHPIHYLIPPLLCSCGVILLALTGIFQQYFVYQVQKIRLQGYYSFSQKLKHIVRLPFA 120
           W+FHPI  L P LLCSC V  L +TG FQQY VYQVQKIRLQGYY FSQKLKHIVRLPFA
Sbjct: 60  WMFHPIKSLGPSLLCSCDVAFLMITGAFQQYLVYQVQKIRLQGYYMFSQKLKHIVRLPFA 119

Query: 121 ITAYGTAAMLLVIVWRPHISILSISTLLRIIMLIEAICAASFMSVYIGYVHQYNSLNSQP 180
            TAYGTAAMLLV+VW+PHISILSIST+LRIIML+EA+CAASFMSVYIGYV+QYNSLNSQP
Sbjct: 120 TTAYGTAAMLLVMVWKPHISILSISTILRIIMLVEAVCAASFMSVYIGYVYQYNSLNSQP 179

Query: 181 DVMKSLYSPLQPSSSLEGLRYHDGGRLSDEQMALLQYQRENLHFLSEEILRLQECLSKYE 240
           DV+KSLYSPLQPSSSLEGLRY++GGRLSD+QMALLQYQRENLHFLSEEILRLQECLSKYE
Sbjct: 180 DVLKSLYSPLQPSSSLEGLRYYEGGRLSDQQMALLQYQRENLHFLSEEILRLQECLSKYE 239

Query: 241 QSDDGSTPQVDLAHLLAARDQELRTLSAEMNQLQSELRLARSFVAEREAEVLRVRNTNNQ 300
           +S+DGSTPQVDLAHLLAARDQELRT+SAEMNQ+QSEL LARS +AER++E+ +VR TNNQ
Sbjct: 240 RSNDGSTPQVDLAHLLAARDQELRTVSAEMNQIQSELSLARSLIAERDSEIQQVRTTNNQ 299

Query: 301 ---------------------LERALEVERMSNIELQKKISTRRNQHG 327
                                LERALEVERMSN+ELQKKI+T RNQ  
Sbjct: 300 YIEENERLRAILGEWSNRAAKLERALEVERMSNLELQKKITTLRNQQN 347

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118482875|gb|ABK93352.1| unknown [Populus trichocarpa]

 Score =  543 bits (1400), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 270/355 (76%), Positives = 301/355 (84%), Gaps = 23/355 (6%)

Query: 1   MSTERHASSSTSASPEENAMFLDILHEAPLLGHRKSHSIFGSVVYCFVLAGYAILAAGTT 60
           MSTERH +SS S S EENA+FLDI+ EAPL GHRKS SIFG++VYC +LAGYA+LAAG  
Sbjct: 1   MSTERHGNSS-STSREENALFLDIVQEAPLFGHRKSRSIFGAIVYCALLAGYAVLAAGAP 59

Query: 61  WIFHPIHYLIPPLLCSCGVILLALTGIFQQYFVYQVQKIRLQGYYSFSQKLKHIVRLPFA 120
           +IF PI +L+P LLCSC V+LL LTGIFQQYFV QVQKIRLQGYYSFSQKLKHIVRLPFA
Sbjct: 60  YIFRPIKHLVPSLLCSCDVVLLILTGIFQQYFVSQVQKIRLQGYYSFSQKLKHIVRLPFA 119

Query: 121 ITAYGTAAMLLVIVWRPHISILSISTLLRIIMLIEAICAASFMSVYIGYVHQYNSLNSQP 180
           ITAYGTA MLLV+VW+PHIS+LS+STLLRI ML EAICAASFMSVYIGY+HQYNSLNS+P
Sbjct: 120 ITAYGTATMLLVMVWKPHISVLSVSTLLRINMLAEAICAASFMSVYIGYLHQYNSLNSEP 179

Query: 181 DVMKSLYSPLQPSSSLEGLRYHDGGRLSDEQMALLQYQRENLHFLSEEILRLQECLSKYE 240
           D++KSLYSPLQ SS LEGLRYHDG RLSD+QMALLQYQRENLHFLSEE+LRLQECLSKYE
Sbjct: 180 DILKSLYSPLQHSSPLEGLRYHDGSRLSDQQMALLQYQRENLHFLSEEVLRLQECLSKYE 239

Query: 241 QSDDGSTPQVDLAHLLAARDQELRTLSAEMNQLQSELRLARSFVAEREAEVLRVRNTNNQ 300
           +SDDGSTPQVDLAHLLAAR+QELRTLSAEMNQLQSELRLARS +AER++E+ +VR TNNQ
Sbjct: 240 RSDDGSTPQVDLAHLLAAREQELRTLSAEMNQLQSELRLARSLIAERDSELQQVRTTNNQ 299

Query: 301 ---------------------LERALEVERMSNIELQKKISTRRNQ-HGPAESNE 333
                                LERALE ERMSN+ELQK  ST RNQ H   E++E
Sbjct: 300 YVEENERLRAILGEWSARAAKLERALEGERMSNLELQKNFSTSRNQSHVSTETSE 354

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224141619|ref|XP_002324164.1| predicted protein [Populus trichocarpa] gi|222865598|gb|EEF02729.1| predicted protein [Populus trichocarpa]

 Score =  541 bits (1394), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 269/355 (75%), Positives = 300/355 (84%), Gaps = 23/355 (6%)

Query: 1   MSTERHASSSTSASPEENAMFLDILHEAPLLGHRKSHSIFGSVVYCFVLAGYAILAAGTT 60
           MSTERH +SS S S EENA+FLDI+ EAPL GHRKS SIFG++VYC +LA YA+LAAG  
Sbjct: 1   MSTERHGNSS-STSREENALFLDIVQEAPLFGHRKSRSIFGAIVYCALLASYAVLAAGAP 59

Query: 61  WIFHPIHYLIPPLLCSCGVILLALTGIFQQYFVYQVQKIRLQGYYSFSQKLKHIVRLPFA 120
           +IF PI +L+P LLCSC V+LL LTGIFQQYFV QVQKIRLQGYYSFSQKLKHIVRLPFA
Sbjct: 60  YIFRPIKHLVPSLLCSCDVVLLILTGIFQQYFVSQVQKIRLQGYYSFSQKLKHIVRLPFA 119

Query: 121 ITAYGTAAMLLVIVWRPHISILSISTLLRIIMLIEAICAASFMSVYIGYVHQYNSLNSQP 180
           ITAYGTA MLLV+VW+PHIS+LS+STLLRI ML EAICAASFMSVYIGY+HQYNSLNS+P
Sbjct: 120 ITAYGTATMLLVMVWKPHISVLSVSTLLRINMLAEAICAASFMSVYIGYLHQYNSLNSEP 179

Query: 181 DVMKSLYSPLQPSSSLEGLRYHDGGRLSDEQMALLQYQRENLHFLSEEILRLQECLSKYE 240
           D++KSLYSPLQ SS LEGLRYHDG RLSD+QMALLQYQRENLHFLSEE+LRLQECLSKYE
Sbjct: 180 DILKSLYSPLQHSSPLEGLRYHDGSRLSDQQMALLQYQRENLHFLSEEVLRLQECLSKYE 239

Query: 241 QSDDGSTPQVDLAHLLAARDQELRTLSAEMNQLQSELRLARSFVAEREAEVLRVRNTNNQ 300
           +SDDGSTPQVDLAHLLAAR+QELRTLSAEMNQLQSELRLARS +AER++E+ +VR TNNQ
Sbjct: 240 RSDDGSTPQVDLAHLLAAREQELRTLSAEMNQLQSELRLARSLIAERDSELQQVRTTNNQ 299

Query: 301 ---------------------LERALEVERMSNIELQKKISTRRNQ-HGPAESNE 333
                                LERALE ERMSN+ELQK  ST RNQ H   E++E
Sbjct: 300 YVEENERLRAILGEWSARAAKLERALEGERMSNLELQKNFSTSRNQSHVSTETSE 354

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356556392|ref|XP_003546510.1| PREDICTED: uncharacterized protein LOC100810116 [Glycine max]

 Score =  514 bits (1323), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 254/356 (71%), Positives = 293/356 (82%), Gaps = 24/356 (6%)

Query: 1   MSTERHASSSTSASPEENAMFLDILHEAPLLGHRKSHSIFGSVVYCFVLAGYAILAAGTT 60
           M+T+R+AS   + SPEENA+FLDILHEAPL  HR++  + GSV+YC +LAGYA LA G  
Sbjct: 1   MATDRYASPPAT-SPEENALFLDILHEAPLFAHRQAARVIGSVLYCILLAGYATLAIGAH 59

Query: 61  WIFHPIHYLIPPLLCSCGVILLALTGIFQQYFVYQVQKIRLQGYYSFSQKLKHIVRLPFA 120
           WIF P+  LI P+LCSC V+LL LTGIFQQY VYQVQKIRLQGYYSFSQKLK IVR+PFA
Sbjct: 60  WIFRPVRGLISPVLCSCDVLLLLLTGIFQQYLVYQVQKIRLQGYYSFSQKLKFIVRIPFA 119

Query: 121 ITAYGTAAMLLVIVWRPHISILSISTLLRIIMLIEAICAASFMSVYIGYVHQYNSLNSQP 180
           ITAYGTAAMLLVIVW+P+   LSIS +LRIIM++EA+CA  FMS++IGY+HQYNSLNS P
Sbjct: 120 ITAYGTAAMLLVIVWKPYTGFLSISAILRIIMVVEAVCAGCFMSLFIGYIHQYNSLNSHP 179

Query: 181 DVMKSLYSPLQPSSSLEGLRYHDGGRLSDEQMALLQYQRENLHFLSEEILRLQECLSKYE 240
           DV+KSLYSPLQPSSSLEGLRYHD GRLSD+QMALLQYQRENLHFLSEEILRLQECLSKYE
Sbjct: 180 DVLKSLYSPLQPSSSLEGLRYHD-GRLSDQQMALLQYQRENLHFLSEEILRLQECLSKYE 238

Query: 241 QSDDGSTPQVDLAHLLAARDQELRTLSAEMNQLQSELRLARSFVAEREAEVLRVRNTNNQ 300
           ++DD STPQVDLAHLLAARDQELRTLSAEMNQ+QSELRLARS +AER++E+  VR TNNQ
Sbjct: 239 RTDDRSTPQVDLAHLLAARDQELRTLSAEMNQVQSELRLARSLIAERDSEIQHVRMTNNQ 298

Query: 301 ---------------------LERALEVERMSNIELQKKISTRRNQ-HGPAESNEH 334
                                LERALE ERMS +ELQ+K+ST R+Q +   E+N+H
Sbjct: 299 YVEENERLRAILGEWSTRAAKLERALEAERMSTLELQRKLSTPRSQPYTSTEANQH 354

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449452570|ref|XP_004144032.1| PREDICTED: uncharacterized protein LOC101208802 [Cucumis sativus] gi|449500496|ref|XP_004161113.1| PREDICTED: uncharacterized protein LOC101230501 [Cucumis sativus]

 Score =  512 bits (1318), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 252/354 (71%), Positives = 284/354 (80%), Gaps = 22/354 (6%)

Query: 1   MSTERHASSSTSASPEENAMFLDILHEAPLLGHRKSHSIFGSVVYCFVLAGYAILAAGTT 60
           M+ ERHASS  ++S E+NAMFLDILHEAPL GHRK     GS++YCFVL GYA LA G  
Sbjct: 1   MAAERHASSRATSS-EDNAMFLDILHEAPLFGHRKPARTVGSIIYCFVLVGYAALAIGAP 59

Query: 61  WIFHPIHYLIPPLLCSCGVILLALTGIFQQYFVYQVQKIRLQGYYSFSQKLKHIVRLPFA 120
           WIFHPI + + PLLCSC V+LL LTGIFQQY VYQV KIRLQGYYSFSQKLKHIVRLPFA
Sbjct: 60  WIFHPIKHFVEPLLCSCHVVLLMLTGIFQQYLVYQVHKIRLQGYYSFSQKLKHIVRLPFA 119

Query: 121 ITAYGTAAMLLVIVWRPHISILSISTLLRIIMLIEAICAASFMSVYIGYVHQYNSLNSQP 180
           +TAYGTAA+LLV+ W P IS LSI  +LR+IMLIEA+CA SFM +YI YV +YNSLNSQP
Sbjct: 120 VTAYGTAALLLVMAWEPQISALSIPIILRLIMLIEAVCAGSFMIIYISYVQKYNSLNSQP 179

Query: 181 DVMKSLYSPLQPSSSLEGLRYHDGGRLSDEQMALLQYQRENLHFLSEEILRLQECLSKYE 240
           DV+KSLYSPLQ SSSLE LRYHD GRLSD+QMALLQYQRENLHFL+EEILRLQECLSKYE
Sbjct: 180 DVLKSLYSPLQQSSSLEDLRYHDVGRLSDQQMALLQYQRENLHFLNEEILRLQECLSKYE 239

Query: 241 QSDDGSTPQVDLAHLLAARDQELRTLSAEMNQLQSELRLARSFVAEREAEVLRVRNTNNQ 300
           +S DGSTPQVDLAH+LAARDQELRTLSAEMNQ+ SELRLARS +AER+ E+ ++  TN Q
Sbjct: 240 RSSDGSTPQVDLAHMLAARDQELRTLSAEMNQVTSELRLARSVIAERDTEIQKLLTTNKQ 299

Query: 301 ---------------------LERALEVERMSNIELQKKISTRRNQHGPAESNE 333
                                LERALE ERMSNIELQKKIST + Q   +E++E
Sbjct: 300 YVEENERLRAILGEWSTRAAKLERALEAERMSNIELQKKISTLKKQPHASETSE 353

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356530429|ref|XP_003533784.1| PREDICTED: uncharacterized protein LOC100795952 [Glycine max]

 Score =  511 bits (1317), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 256/355 (72%), Positives = 289/355 (81%), Gaps = 24/355 (6%)

Query: 1   MSTERHASSSTSASPEENAMFLDILHEAPLLGHRKSHSIFGSVVYCFVLAGYAILAAGTT 60
           M+T+R+AS   + SPEENA+FLDILHEAPL  HRK+  + GSV YC +LAGYA LA G  
Sbjct: 1   MATDRYASPPAT-SPEENALFLDILHEAPLFAHRKAARVIGSVFYCILLAGYATLAIGAH 59

Query: 61  WIFHPIHYLIPPLLCSCGVILLALTGIFQQYFVYQVQKIRLQGYYSFSQKLKHIVRLPFA 120
           WIF P+  LI P+LCSC V+LL LTGIFQQY VYQVQKIRLQGYYSFSQKLK IVR+PFA
Sbjct: 60  WIFRPVQGLISPVLCSCDVLLLLLTGIFQQYLVYQVQKIRLQGYYSFSQKLKFIVRIPFA 119

Query: 121 ITAYGTAAMLLVIVWRPHISILSISTLLRIIMLIEAICAASFMSVYIGYVHQYNSLNSQP 180
           ITAYGTAAMLLVIVW+P+   LSIS +LRIIM++EA+ A  FMS+YIGY+HQYNSLNS P
Sbjct: 120 ITAYGTAAMLLVIVWKPYTGFLSISAILRIIMVVEAVSAVCFMSLYIGYIHQYNSLNSHP 179

Query: 181 DVMKSLYSPLQPSSSLEGLRYHDGGRLSDEQMALLQYQRENLHFLSEEILRLQECLSKYE 240
           DV+KSLYSPLQPSSSLEGLRYHD GRLSD+QMALLQYQRENLHFLSEEILRLQECLSKYE
Sbjct: 180 DVLKSLYSPLQPSSSLEGLRYHD-GRLSDQQMALLQYQRENLHFLSEEILRLQECLSKYE 238

Query: 241 QSDDGSTPQVDLAHLLAARDQELRTLSAEMNQLQSELRLARSFVAEREAEVLRVRNTNNQ 300
            +DD STPQVDLAHLLAARDQELRTLSAEMNQ+QSELRLARS +AER++E+  VR TNNQ
Sbjct: 239 GTDDRSTPQVDLAHLLAARDQELRTLSAEMNQVQSELRLARSLIAERDSEIQHVRTTNNQ 298

Query: 301 ---------------------LERALEVERMSNIELQKKISTRRNQHGPA-ESNE 333
                                LERALE ERMS +ELQ+K+ST R+Q   A E+NE
Sbjct: 299 YVEENERLRAILGEWSTRAAKLERALEAERMSTLELQRKLSTLRSQSYTADEANE 353

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18396221|ref|NP_565332.1| FRIGIDA interacting protein 1 [Arabidopsis thaliana] gi|20197504|gb|AAM15099.1| Expressed protein [Arabidopsis thaliana] gi|21554377|gb|AAM63484.1| unknown [Arabidopsis thaliana] gi|330250899|gb|AEC05993.1| FRIGIDA interacting protein 1 [Arabidopsis thaliana]

 Score =  509 bits (1312), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 260/347 (74%), Positives = 286/347 (82%), Gaps = 24/347 (6%)

Query: 1   MSTERHASSSTSASPEENAMFLDILHEAPLLGHRKSHSIFGSVVYCFVLAGYAILAAGTT 60
           MSTER ASS+   + EENAMFLDILHEAPL GHRKS S+ GS +Y  +LAGYAILAAG  
Sbjct: 1   MSTERRASSNPMTN-EENAMFLDILHEAPLFGHRKSRSLVGSYLYMLLLAGYAILAAGAP 59

Query: 61  WIFHPIHYLIPPLLCSCGVILLALTGIFQQYFVYQVQKIRLQGYYSFSQKLKHIVRLPFA 120
           W+FH +  L P LLC C V LL +TG+FQQYFVYQVQKIRLQGYYSFSQKLKH+VRLPFA
Sbjct: 60  WMFHRVQQLTPSLLCCCDVALLVVTGVFQQYFVYQVQKIRLQGYYSFSQKLKHVVRLPFA 119

Query: 121 ITAYGTAAMLLVIVWRPHISILSISTLLRIIMLIEAICAASFMSVYIGYVHQYNSLNSQP 180
           I AYGTAAMLLVIVWRP I ILSIS+L RIIML+EA+ A  FM +YIGYVHQYNS+NS+P
Sbjct: 120 IAAYGTAAMLLVIVWRPQIHILSISSLQRIIMLVEAVGAGFFMGLYIGYVHQYNSVNSRP 179

Query: 181 DVMKSLYSPLQPSSSLEGLRYHDGGRLSDEQMALLQYQRENLHFLSEEILRLQECLSKYE 240
           DV+KSLYSPLQPSSS+EGLRY++ GRLSD+Q ALLQYQRENLHFLSEEIL LQE LSKYE
Sbjct: 180 DVLKSLYSPLQPSSSMEGLRYYE-GRLSDQQTALLQYQRENLHFLSEEILCLQEKLSKYE 238

Query: 241 QSDDGSTPQVDLAHLLAARDQELRTLSAEMNQLQSELRLARSFVAEREAEVLRVRNTNNQ 300
           QSDDGSTPQVDLAHLLAARDQELRTLSAEMNQLQSELRLARS +AER+AEV RV +TNNQ
Sbjct: 239 QSDDGSTPQVDLAHLLAARDQELRTLSAEMNQLQSELRLARSLIAERDAEVQRVNSTNNQ 298

Query: 301 ---------------------LERALEVERMSNIELQKKI-STRRNQ 325
                                LERALEVERMSN ELQK++ STRR Q
Sbjct: 299 YIEENERLRAILSEWSMRAANLERALEVERMSNSELQKEVASTRRKQ 345

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255550447|ref|XP_002516274.1| conserved hypothetical protein [Ricinus communis] gi|223544760|gb|EEF46276.1| conserved hypothetical protein [Ricinus communis]

 Score =  509 bits (1311), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 257/359 (71%), Positives = 288/359 (80%), Gaps = 25/359 (6%)

Query: 1   MSTERHASSSTSASPEENAMFLDILHEAPLLGHRKSHSIFGSVVYCFVLAGYAILAAGTT 60
           MS ERH +S  S S EE +MF+DILHEAPL GHRK  SIFG+VVYC +LAGY++L A   
Sbjct: 1   MSVERHGNS-PSTSHEETSMFVDILHEAPLCGHRKRRSIFGAVVYCVILAGYSVLGAVAP 59

Query: 61  WIFHPIHYLIPPLLCSCGVILLALTGIFQQYFVYQVQKIRLQGYYSFSQKLKHIVRLPFA 120
            +FH  H L+P LL SC V LL +TGIFQQYFV QVQKIRLQGYYSFSQKLKHIVRLPFA
Sbjct: 60  ILFH--HRLVPSLLSSCDVALLIITGIFQQYFVSQVQKIRLQGYYSFSQKLKHIVRLPFA 117

Query: 121 ITAYGTAAMLLVIVWRPHISILSISTLLRIIMLIEAICAASFMSVYIGYVHQYNSLNSQP 180
           ITAYGTAAMLLV+VW+P IS LSIS LLRIIML EA+CA SFMS+YIGY+HQYNSL+SQP
Sbjct: 118 ITAYGTAAMLLVMVWKPQISFLSISALLRIIMLTEAVCAVSFMSIYIGYLHQYNSLDSQP 177

Query: 181 DVMKSLYSPLQPSSSLEGLRYHDGGRLSDEQMALLQYQRENLHFLSEEILRLQECLSKYE 240
           D++KSLYSPLQ SS LE LRYH GGRLSD+QMALLQYQRENLHF+SEEILRLQECLSKYE
Sbjct: 178 DILKSLYSPLQESSPLESLRYHHGGRLSDQQMALLQYQRENLHFMSEEILRLQECLSKYE 237

Query: 241 QSDDGSTPQVDLAHLLAARDQELRTLSAEMNQLQSELRLARSFVAEREAEVLRVRNTNNQ 300
           +S DGSTPQVDLAH+LAAR+QELRTLSAEMNQLQ+ELRLARS +AER++EV +VR TNNQ
Sbjct: 238 RSSDGSTPQVDLAHMLAAREQELRTLSAEMNQLQTELRLARSLIAERDSEVQQVRTTNNQ 297

Query: 301 ---------------------LERALEVERMSNIELQKKISTRRNQHG-PAESNEHDTA 337
                                LERALEVER+SN+ELQKK+S  R Q   P E  E   A
Sbjct: 298 YVEENERLRAILGEWSTRAAKLERALEVERLSNLELQKKLSASRTQSNMPTEQREQHRA 356

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297831684|ref|XP_002883724.1| hypothetical protein ARALYDRAFT_319341 [Arabidopsis lyrata subsp. lyrata] gi|297329564|gb|EFH59983.1| hypothetical protein ARALYDRAFT_319341 [Arabidopsis lyrata subsp. lyrata]

 Score =  502 bits (1293), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 258/347 (74%), Positives = 282/347 (81%), Gaps = 24/347 (6%)

Query: 1   MSTERHASSSTSASPEENAMFLDILHEAPLLGHRKSHSIFGSVVYCFVLAGYAILAAGTT 60
           MSTER  SSS   + EENAMFLDILHEAPL GHRKS S+ GS +Y  +LA YAILAAG  
Sbjct: 1   MSTERR-SSSNPMTNEENAMFLDILHEAPLFGHRKSRSLVGSYLYIVLLASYAILAAGAP 59

Query: 61  WIFHPIHYLIPPLLCSCGVILLALTGIFQQYFVYQVQKIRLQGYYSFSQKLKHIVRLPFA 120
            IFH +  L P LLC C V LL +TGIFQQYFVYQVQKIRLQGYYSFSQKLKH+VRLPFA
Sbjct: 60  LIFHRVEQLTPSLLCCCDVALLVVTGIFQQYFVYQVQKIRLQGYYSFSQKLKHVVRLPFA 119

Query: 121 ITAYGTAAMLLVIVWRPHISILSISTLLRIIMLIEAICAASFMSVYIGYVHQYNSLNSQP 180
           I AYGTAAMLLVIVWRP   ILSIS+L RIIML+EA+CA  FM +YIGYVHQYNS+NS+P
Sbjct: 120 IAAYGTAAMLLVIVWRPQFHILSISSLQRIIMLVEAVCAGFFMGLYIGYVHQYNSVNSRP 179

Query: 181 DVMKSLYSPLQPSSSLEGLRYHDGGRLSDEQMALLQYQRENLHFLSEEILRLQECLSKYE 240
           DV+KSLYSPLQPSSS+EGLRY++ GRLSD+Q ALLQYQRENLHFLSEEIL LQE LSKYE
Sbjct: 180 DVLKSLYSPLQPSSSMEGLRYYE-GRLSDQQTALLQYQRENLHFLSEEILSLQEKLSKYE 238

Query: 241 QSDDGSTPQVDLAHLLAARDQELRTLSAEMNQLQSELRLARSFVAEREAEVLRVRNTNNQ 300
           QSDDGSTPQVDLAHLLAARDQELRTLSAEMNQLQSELRLARS +AER+AEV RV +TNNQ
Sbjct: 239 QSDDGSTPQVDLAHLLAARDQELRTLSAEMNQLQSELRLARSLIAERDAEVQRVNSTNNQ 298

Query: 301 ---------------------LERALEVERMSNIELQKKIS-TRRNQ 325
                                LERALEVERMSN ELQK+++  RR Q
Sbjct: 299 YIEENERLRAILSEWSMRAANLERALEVERMSNSELQKEVAGGRRKQ 345

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297812241|ref|XP_002874004.1| hypothetical protein ARALYDRAFT_488961 [Arabidopsis lyrata subsp. lyrata] gi|297319841|gb|EFH50263.1| hypothetical protein ARALYDRAFT_488961 [Arabidopsis lyrata subsp. lyrata]

 Score =  472 bits (1214), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 234/350 (66%), Positives = 275/350 (78%), Gaps = 23/350 (6%)

Query: 1   MSTERHASSSTSASPEENAMFLDILHEAPLLGHRKSHSIFGSVVYCFVLAGYAILAAGTT 60
           M+ +R ASS    + ++NAMFLDILHEAPL GHR+S S+ GS +Y  +LAGYAILAAG  
Sbjct: 1   MANDRRASSVNPTTEQDNAMFLDILHEAPLFGHRESRSLVGSCIYLIILAGYAILAAGAP 60

Query: 61  WIFHPIHYLIPPLLCSCGVILLALTGIFQQYFVYQVQKIRLQGYYSFSQKLKHIVRLPFA 120
           WI   + YLIP LLCSC V LL LTG+FQQYFV QVQKIRLQGYYSFSQKLKH+VRLPFA
Sbjct: 61  WILQSVEYLIPSLLCSCNVALLMLTGMFQQYFVNQVQKIRLQGYYSFSQKLKHVVRLPFA 120

Query: 121 ITAYGTAAMLLVIVWRPHISILSISTLLRIIMLIEAICAASFMSVYIGYVHQYNSLNSQP 180
           I AYGTA+MLL +VWRP++S+L I T+ R IM +EAI AASFM V++GYV QYNS+NSQP
Sbjct: 121 IMAYGTASMLLFMVWRPYVSVLPIFTVQRFIMSVEAISAASFMIVFVGYVRQYNSVNSQP 180

Query: 181 DVMKSLYSPLQPSSSLEGLRYHDGGRLSDEQMALLQYQRENLHFLSEEILRLQECLSKYE 240
           DV+ SLYSPLQP ++LEGLRYH+ GRLSD+QMALLQYQRENLH+LSEEILRLQE LSKYE
Sbjct: 181 DVLNSLYSPLQP-ATLEGLRYHEAGRLSDQQMALLQYQRENLHYLSEEILRLQESLSKYE 239

Query: 241 QSDDGSTPQVDLAHLLAARDQELRTLSAEMNQLQSELRLARSFVAEREAEVLRVRNTNNQ 300
            +  G TPQVDLAHL+A RDQELRTLSAE++QL SEL LARS ++ER+ E+  VRNTNNQ
Sbjct: 240 TNGSG-TPQVDLAHLVATRDQELRTLSAEVDQLHSELNLARSLISERDREIQHVRNTNNQ 298

Query: 301 ---------------------LERALEVERMSNIELQKKISTRRNQHGPA 329
                                LERALEVER+SN+EL+KK+S  R+Q   A
Sbjct: 299 YVAENERLRAILGEWSMRAAKLERALEVERISNLELRKKVSALRDQRQVA 348

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	337
TAIR|locus:505006239	355	FIP1 "AT2G06005" [Arabidopsis	0.884	0.839	0.72	1.9e-108
TAIR|locus:2149937	348	AT5G20580 "AT5G20580" [Arabido	0.916	0.887	0.642	7.1e-100
MGI|MGI:1920317	266	Tmem192 "transmembrane protein	0.569	0.721	0.237	0.00054
RGD|1309341	266	Tmem192 "transmembrane protein	0.454	0.575	0.231	0.00069
ZFIN|ZDB-GENE-040426-2254	271	tmem192 "transmembrane protein	0.451	0.560	0.261	0.00072

TAIR|locus:505006239 FIP1 "AT2G06005" [Arabidopsis thaliana (taxid:3702)]

 Score = 1072 (382.4 bits), Expect = 1.9e-108, P = 1.9e-108
 Identities = 216/300 (72%), Positives = 237/300 (79%)

Query:     1 MSTERHASSSTSASPEENAMFLDILHEAPLLGHRKSHSIFGSVVYCFVLAGYAILAAGTT 60
             MSTER ASS+   + EENAMFLDILHEAPL GHRKS S+ GS +Y  +LAGYAILAAG  
Sbjct:     1 MSTERRASSNPMTN-EENAMFLDILHEAPLFGHRKSRSLVGSYLYMLLLAGYAILAAGAP 59

Query:    61 WIFHPIHYLIPPLLCSCGVILLALTGIFQQYFVYQVQKIRLQGYYSFSQKLKHIVRLPFA 120
             W+FH +  L P LLC C V LL +TG+FQQYFVYQVQKIRLQGYYSFSQKLKH+VRLPFA
Sbjct:    60 WMFHRVQQLTPSLLCCCDVALLVVTGVFQQYFVYQVQKIRLQGYYSFSQKLKHVVRLPFA 119

Query:   121 ITAYGTAAMLLVIVWRPHXXXXXXXXXXXXXXXXEAICAASFMSVYIGYVHQYNSLNSQP 180
             I AYGTAAMLLVIVWRP                 EA+ A  FM +YIGYVHQYNS+NS+P
Sbjct:   120 IAAYGTAAMLLVIVWRPQIHILSISSLQRIIMLVEAVGAGFFMGLYIGYVHQYNSVNSRP 179

Query:   181 DVMKXXXXXXXXXXXXEGLRYHDGGRLSDEQMALLQYQRENLHFLSEEILRLQECLSKYE 240
             DV+K            EGLRY++G RLSD+Q ALLQYQRENLHFLSEEIL LQE LSKYE
Sbjct:   180 DVLKSLYSPLQPSSSMEGLRYYEG-RLSDQQTALLQYQRENLHFLSEEILCLQEKLSKYE 238

Query:   241 QSDDGSTPQVDLAHLLAARDQELRTLSAEMNQLQSELRLARSFVAEREAEVLRVRNTNNQ 300
             QSDDGSTPQVDLAHLLAARDQELRTLSAEMNQLQSELRLARS +AER+AEV RV +TNNQ
Sbjct:   239 QSDDGSTPQVDLAHLLAARDQELRTLSAEMNQLQSELRLARSLIAERDAEVQRVNSTNNQ 298

GO:0008150 "biological_process" evidence=ND

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2149937 AT5G20580 "AT5G20580" [Arabidopsis thaliana (taxid:3702)]

 Score = 991 (353.9 bits), Expect = 7.1e-100, P = 7.1e-100
 Identities = 201/313 (64%), Positives = 234/313 (74%)

Query:     1 MSTERHASSSTSASPEENAMFLDILHEAPLLGHRKSHSIFGSVVYCFVLAGYAILAAGTT 60
             M+ +R ASS   ++ ++NAMFLDILHEAPL GHR+S S+ GS +Y  +LA YAILAAG  
Sbjct:     1 MANDRRASSVNPSTEQDNAMFLDILHEAPLFGHRESRSLVGSCIYLIILACYAILAAGAP 60

Query:    61 WIFHPIHYLIPPLLCSCGVILLALTGIFQQYFVYQVQKIRLQGYYSFSQKLKHIVRLPFA 120
             WI   + YLIP LLCSC V LL LTG+FQQYFV QVQKIRLQGYYSFSQKLKH+VRLPFA
Sbjct:    61 WILQSVDYLIPSLLCSCNVALLMLTGMFQQYFVNQVQKIRLQGYYSFSQKLKHVVRLPFA 120

Query:   121 ITAYGTAAMLLVIVWRPHXXXXXXXXXXXXXXXXEAICAASFMSVYIGYVHQYNSLNSQP 180
             I AYGTA+MLL + WRP+                EAI AASFM V++GYV QYNS+NSQP
Sbjct:   121 IMAYGTASMLLFMEWRPYVSVLPIFTVQRFIMSVEAISAASFMIVFVGYVRQYNSVNSQP 180

Query:   181 DVMKXXXXXXXXXXXXEGLRYHDGGRLSDEQMALLQYQRENLHFLSEEILRLQECLSKYE 240
             DV+             EGLRYH+ GRLSD+QMALLQYQRENLH+LSEEILRLQE LSKYE
Sbjct:   181 DVLNSLYSPLQPAAL-EGLRYHEAGRLSDQQMALLQYQRENLHYLSEEILRLQESLSKYE 239

Query:   241 QSDDGSTPQVDLAHLLAARDQELRTLSAEMNQLQSELRLARSFVAEREAEVLRVRNTNNQ 300
              ++  STPQVDLAHL+A RDQELRTLSAE++QL SEL LARS ++ER+ E+  VRNTNNQ
Sbjct:   240 -TNGSSTPQVDLAHLVATRDQELRTLSAEVDQLHSELNLARSLISERDREIQHVRNTNNQ 298

Query:   301 LERALEVERMSNI 313
                  E ER+  I
Sbjct:   299 Y--VAENERLRAI 309

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

MGI|MGI:1920317 Tmem192 "transmembrane protein 192" [Mus musculus (taxid:10090)]

 Score = 112 (44.5 bits), Expect = 0.00054, P = 0.00054
 Identities = 49/206 (23%), Positives = 85/206 (41%)

Query:    37 HSIFGSVVYCFVLAGYAILAAGTTWIFHPIHYLIPPLLCSC---G-VILLALTGIFQQYF 92
             H +F  VV  F L G   L    T    P +Y  P  + +    G +IL  L  +F++Y 
Sbjct:    58 HVVF--VVLAF-LTGVPCLYPNPTEDKCPENYTSPLKVQTAIILGKLILWILHLLFERYV 114

Query:    93 VYQVQKIRLQGYYSFSQKLKHIVRLPFAITAYGTAAMLLVIVWRPHXX---XXXXXXXXX 149
              Y  +K+R +GY    +  +H+  L   I + G  A+LL++  + H              
Sbjct:   115 QYHHRKVRSRGYSQIYRSTRHLKTLALTIHSSGNTALLLLLCVQ-HSFPEPSKLYLELIL 173

Query:   150 XXXXXEAICAASFMSVYIGYVHQYNSLNSQPDVMKXXXXXX--XXXXXXEGLRYHDG-GR 206
                  E IC+ S + +YI  + ++N     PDV++               G R       
Sbjct:   174 AVLALELICSLSCLILYIVKIRRFNRAKPLPDVLEEEKIYAYPSNTASETGFRTVSSLEE 233

Query:   207 LSDEQMALLQYQRENLHFLSEEILRL 232
             + ++Q  ++ Y + +   LS+ +L L
Sbjct:   234 IVEKQEDIIVYLKRHNALLSKRLLEL 259

GO:0003674 "molecular_function" evidence=ND

GO:0005764 "lysosome" evidence=IEA

GO:0005768 "endosome" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

RGD|1309341 Tmem192 "transmembrane protein 192" [Rattus norvegicus (taxid:10116)]

 Score = 111 (44.1 bits), Expect = 0.00069, P = 0.00069
 Identities = 37/160 (23%), Positives = 68/160 (42%)

Query:    79 VILLALTGIFQQYFVYQVQKIRLQGYYSFSQKLKHIVRLPFAITAYGTAAMLLVIVWR-- 136
             VIL  L  +F++Y  Y  +K+R +GY    +  +H+  L   I + G  A+LL++  +  
Sbjct:   101 VILWILHLLFERYIQYHHRKVRSRGYSQIYRSTRHLKALALTIHSSGNTALLLLLCVQYS 160

Query:   137 -PHXXXXXXXXXXXXXXXXEAICAASFMSVYIGYVHQYNSLNSQPDVMKXXXXXX--XXX 193
              P                 E IC+ S + +Y   + ++N    QPDV++           
Sbjct:   161 FPEPNKLYLELILAVLAL-ELICSLSCLVLYTVKIRRFNKAKPQPDVLEEEKCYAYPSNI 219

Query:   194 XXXEGLRYHDG-GRLSDEQMALLQYQRENLHFLSEEILRL 232
                 G R       + ++Q  ++ Y + +   LS+ +L L
Sbjct:   220 ASETGFRTVSSLEEIVEKQGDIIVYLKRHNALLSKRLLEL 259

GO:0005765 "lysosomal membrane" evidence=IEA

GO:0005770 "late endosome" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

ZFIN|ZDB-GENE-040426-2254 tmem192 "transmembrane protein 192" [Danio rerio (taxid:7955)]

 Score = 111 (44.1 bits), Expect = 0.00072, P = 0.00072
 Identities = 44/168 (26%), Positives = 67/168 (39%)

Query:    79 VILLALTGIFQQYFVYQ--VQK----IRLQGYYSFSQKLKHIVRLPFAITAYGTAAMLLV 132
             V+LL    ++   F+Y   VQ+    +R +GY  F +  K I  LP  I + G AA+L V
Sbjct:    99 VVLLGKVALWVVVFIYDRVVQRRHSAVRRKGYLDFYRMTKGIKSLPLLIHSAGNAAILTV 158

Query:   133 IVWRPHXXXXXXXXXXXXXXXXEAICAASFMSV-----YIGYVHQYNSLNSQPDVMKXXX 187
             I   P                   IC    +++     Y  +V ++N     PDV +   
Sbjct:   159 IA--PSSLLDANVKNLSVYLLLAIICLELLLTIICLLRYTVHVVKFNRKKPHPDVTEEER 216

Query:   188 XXXXXXXXXEGLRYHDGGRLSD--EQMA-LLQYQRENLHFLSEEILRL 232
                          + DG  L D  E+ A L+ Y +++   LS  IL L
Sbjct:   217 SYGCSSDAHTETGFRDGSSLEDVVEKQADLIDYLKQHNSVLSRRILTL 264


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.321   0.133   0.386    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      337       309   0.00079  116 3  11 22  0.50    33
                                                     33  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  5
  No. of states in DFA:  612 (65 KB)
  Total size of DFA:  211 KB (2118 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  28.87u 0.16s 29.03t   Elapsed:  00:00:01
  Total cpu time:  28.87u 0.16s 29.03t   Elapsed:  00:00:01
  Start:  Mon May 20 19:35:08 2013   End:  Mon May 20 19:35:09 2013

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=IEA

GO:0005764 "lysosome" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0005768 "endosome" evidence=IEA

GO:0005770 "late endosome" evidence=IEA

GO:0005765 "lysosomal membrane" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	337
PF14802	236	TMEM192: TMEM192 family	100.0
COG2433	652	Uncharacterized conserved protein [Function unknow	87.96
PF15619	194	Lebercilin: Ciliary protein causing Leber congenit	87.23
KOG4552	272	consensus Vitamin-D-receptor interacting protein c	86.91
PF14802	236	TMEM192: TMEM192 family	85.22
PRK09039	343	hypothetical protein; Validated	85.1
PF00038	312	Filament: Intermediate filament protein; InterPro:	84.6
PRK09039	343	hypothetical protein; Validated	83.43
TIGR01010	362	BexC_CtrB_KpsE polysaccharide export inner-membran	83.25
PRK10884	206	SH3 domain-containing protein; Provisional	82.71

>PF14802 TMEM192: TMEM192 family

Probab=100.00  E-value=5e-60  Score=438.55  Aligned_cols=196  Identities=33%  Similarity=0.471  Sum_probs=183.2

Q ss_pred             cchhhHHHHHHHHHHHHHHhhhhhhcccccc--cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhhccc
Q 019657           38 SIFGSVVYCFVLAGYAILAAGTTWIFHPIHY--LIPPLLCSCGVILLALTGIFQQYFVYQVQKIRLQGYYSFSQKLKHIV  115 (337)
Q Consensus        38 ~~~g~~~y~~lL~~~A~~~~~~~wi~~~~~~--~~~~lL~~~~v~LWllt~l~d~yv~~qH~KlRl~GYl~FYr~Tr~lk  115 (337)
                      -+..+++.+++.++.++++++.||++-+..+  -..+++||+||+||++|+++|+|+|+||+|+|++||++|||+|+++|
T Consensus        23 Tv~~~~l~ll~~v~l~~~~~vl~~~~~~~~~~C~~y~iily~~v~lW~lt~l~d~y~k~~H~klr~~GY~~fyr~t~~~r  102 (236)
T PF14802_consen   23 TVPIFSLLLLLSVVLAIVGFVLCWYPPPDEDKCDVYFIILYLHVALWLLTYLFDRYIKHQHQKLRLQGYLDFYRKTKRLR  102 (236)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHhccCCcccCccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence            3445677888888999999999999876665  34679999999999999999999999999999999999999999999


Q ss_pred             ccchhhhhHHHHHHHHHHHHhhccc-----------cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCchhh
Q 019657          116 RLPFAITAYGTAAMLLVIVWRPHIS-----------ILSISTLLRIIMLIEAICAASFMSVYIGYVHQYNSLNSQPDVMK  184 (337)
Q Consensus       116 RlPl~IvSlGna~LLLI~~~~~~~~-----------~Ls~~~ilriil~lElv~~l~~li~YIvkV~rFNk~kp~PDVl~  184 (337)
                      |+||+|||+||++||++++|.+++.           +|++..++++++++|++|++||++.||+||+||||+||+|||++
T Consensus       103 r~Pl~ivS~gna~LLlv~~~~~~~~~~~~~~~c~~~~ls~~~~l~i~~~lE~~~~~~~~i~Yiv~V~kFN~~~~~PDv~~  182 (236)
T PF14802_consen  103 RLPLQIVSLGNAVLLLVQAWQHHYFGPDFAEYCSVAPLSPQLYLQILCSLELLVLLPFLIIYIVKVRKFNKARPPPDVLR  182 (236)
T ss_pred             cchHHHHHHHHHHHHHHHHHHHhcccccchhhcccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCch
Confidence            9999999999999999999999882           49999999999999999999999999999999999999999999


Q ss_pred             cccC--CCCCCCCCCCccccCCCc---hhHhHHHHHHHHHHHhHHhhHHHHHHH
Q 019657          185 SLYS--PLQPSSSLEGLRYHDGGR---LSDEQMALLQYQRENLHFLSEEILRLQ  233 (337)
Q Consensus       185 ee~s--~~~ps~s~~E~Gfrd~g~---LlEKQADLIrYLkdhNa~LSkrIL~Lq  233 (337)
                      ++++  +.+|+++++|+||+++++   ++|||||||+||||||++||+|||+||
T Consensus       183 ~~~~~~~~~~~~~~~e~g~r~~~~~eellEkQadlI~yLk~hn~~L~~ril~l~  236 (236)
T PF14802_consen  183 EEYSRSYLYPSSSSSELGFRDGSSLEELLEKQADLIRYLKEHNARLSRRILALT  236 (236)
T ss_pred             hhhccccCCCCCCccccCCcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence            9999  889999999999998887   999999999999999999999999985

>COG2433 Uncharacterized conserved protein [Function unknown]

Probab=87.96  E-value=4.9  Score=43.51  Aligned_cols=87  Identities=20%  Similarity=0.258  Sum_probs=64.3

Q ss_pred             hhHhHHHHHHHHHHHhHHhhHHHHHHHHHhhhhcccCCCCCchhhhHhhhhhchhHHhhhHHHHHhHHHHHHHHHhhhHH
Q 019657          207 LSDEQMALLQYQRENLHFLSEEILRLQECLSKYEQSDDGSTPQVDLAHLLAARDQELRTLSAEMNQLQSELRLARSFVAE  286 (337)
Q Consensus       207 LlEKQADLIrYLkdhNa~LSkrIL~Lq~~l~kye~~~~gstpqvdl~h~la~r~qelRa~~Ae~~q~~~el~~ar~li~e  286 (337)
                      -..+....+.-|+++|..|..++.+|+....+++..                           ++++..|++    .=..
T Consensus       423 ~i~~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~---------------------------l~~~~r~~~----~~~~  471 (652)
T COG2433         423 RIKKLEETVERLEEENSELKRELEELKREIEKLESE---------------------------LERFRREVR----DKVR  471 (652)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------------HHHHHHHHH----HHHh
Confidence            567788888999999999999999998666555433                           333333333    1123


Q ss_pred             hHHHHHHHHhccHHHHHHHHHhhhccHHHHHHHHHhhh
Q 019657          287 REAEVLRVRNTNNQLERALEVERMSNIELQKKISTRRN  324 (337)
Q Consensus       287 r~~e~~~~r~~n~qle~ale~er~~~~~~~~~~~~~r~  324 (337)
                      ++.||......++.||+.|+.++..--+|.+++..+|.
T Consensus       472 ~~rei~~~~~~I~~L~~~L~e~~~~ve~L~~~l~~l~k  509 (652)
T COG2433         472 KDREIRARDRRIERLEKELEEKKKRVEELERKLAELRK  509 (652)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            56777777777888899999888888888888888884

>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease

Probab=87.23  E-value=14  Score=34.27  Aligned_cols=69  Identities=23%  Similarity=0.458  Sum_probs=58.4

Q ss_pred             HHHHhhhhcccCCCCCchhhhHhhhhhchhHHhhhHHHHHhHHHHHHHHHhhhHHhHHHHHHHHhccHHHHHHHH
Q 019657          232 LQECLSKYEQSDDGSTPQVDLAHLLAARDQELRTLSAEMNQLQSELRLARSFVAEREAEVLRVRNTNNQLERALE  306 (337)
Q Consensus       232 Lq~~l~kye~~~~gstpqvdl~h~la~r~qelRa~~Ae~~q~~~el~~ar~li~er~~e~~~~r~~n~qle~ale  306 (337)
                      -...+++|+.+      +-|+.-+++.-..|+|++-..+...+...+.+-.-|-+.|.|+.+.+..+..|+...+
T Consensus        45 q~kAL~k~e~~------e~~Lpqll~~h~eEvr~Lr~~LR~~q~~~r~~~~klk~~~~el~k~~~~l~~L~~L~~  113 (194)
T PF15619_consen   45 QEKALQKYEDT------EAELPQLLQRHNEEVRVLRERLRKSQEQERELERKLKDKDEELLKTKDELKHLKKLSE  113 (194)
T ss_pred             HHHHHHHHHhh------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33468999987      4477788999999999999999999999999999999999999999888887554443

>KOG4552 consensus Vitamin-D-receptor interacting protein complex component [Transcription]

Probab=86.91  E-value=5.5  Score=38.44  Aligned_cols=85  Identities=18%  Similarity=0.326  Sum_probs=60.4

Q ss_pred             HHHHhHHhhHHHHHHHHHhhhhcccCCCCCchhhhHhhhhhchhHHh---hhHHHHHhHHHHHHHHHhhhHHhHHHHHHH
Q 019657          218 QRENLHFLSEEILRLQECLSKYEQSDDGSTPQVDLAHLLAARDQELR---TLSAEMNQLQSELRLARSFVAEREAEVLRV  294 (337)
Q Consensus       218 LkdhNa~LSkrIL~Lq~~l~kye~~~~gstpqvdl~h~la~r~qelR---a~~Ae~~q~~~el~~ar~li~er~~e~~~~  294 (337)
                      .-|..-.++|+|...-....+-+-...|  --||+-.||.+|+.|.+   .++-|-...+.+.+.-++....||++||++
T Consensus        16 ~~dDlE~i~kelie~l~~~~~qk~l~~g--E~v~il~Ll~~kd~ef~~llkla~eq~k~e~~m~~Lea~VEkrD~~IQqL   93 (272)
T KOG4552|consen   16 SADDLEHIVKELIETLINRDKQKMLKNG--ETVNILKLLDSKDDEFKTLLKLAPEQQKREQLMRTLEAHVEKRDEVIQQL   93 (272)
T ss_pred             HhhHHHHHHHHHHHHHHhhhHHHHHhcc--hHHHHHHHHHhccHHHHHHHHHhHhHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence            3455566777777655444333333334  45799999999999998   566777778889999999999999999998


Q ss_pred             HhccHHHHHH
Q 019657          295 RNTNNQLERA  304 (337)
Q Consensus       295 r~~n~qle~a  304 (337)
                      -..=..-|.+
T Consensus        94 qk~LK~aE~i  103 (272)
T KOG4552|consen   94 QKNLKSAEVI  103 (272)
T ss_pred             HHHHHHHHHH
Confidence            6543333333

>PF14802 TMEM192: TMEM192 family

Probab=85.22  E-value=9.5  Score=36.49  Aligned_cols=33  Identities=21%  Similarity=0.233  Sum_probs=30.0

Q ss_pred             hhHhHHHHHHHHHHHhHHhhHHHHHHHHHhhhh
Q 019657          207 LSDEQMALLQYQRENLHFLSEEILRLQECLSKY  239 (337)
Q Consensus       207 LlEKQADLIrYLkdhNa~LSkrIL~Lq~~l~ky  239 (337)
                      -.+.+.|++++|.|-.++|.++..+||+++.++
T Consensus       203 ~~~~~eellEkQadlI~yLk~hn~~L~~ril~l  235 (236)
T PF14802_consen  203 DGSSLEELLEKQADLIRYLKEHNARLSRRILAL  235 (236)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            445999999999999999999999999998765

>PRK09039 hypothetical protein; Validated

Probab=85.10  E-value=9.5  Score=37.93  Aligned_cols=61  Identities=23%  Similarity=0.208  Sum_probs=43.5

Q ss_pred             hHHHHHhHHHHHHHHHhhhHHhHHHHHHHHhccHH-------HHHHHHHhhhccHHHHHHHHHhhhcC
Q 019657          266 LSAEMNQLQSELRLARSFVAEREAEVLRVRNTNNQ-------LERALEVERMSNIELQKKISTRRNQH  326 (337)
Q Consensus       266 ~~Ae~~q~~~el~~ar~li~er~~e~~~~r~~n~q-------le~ale~er~~~~~~~~~~~~~r~~~  326 (337)
                      +.+...+++.+|...+.+..|-.+++++++.-=..       +|-+|++-.-..-|.+.+|.++....
T Consensus       114 ~~~~~~~l~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L  181 (343)
T PRK09039        114 AEGRAGELAQELDSEKQVSARALAQVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLGRRL  181 (343)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34455666778888888888888888776644333       67777776666688888888886543

>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope

Probab=84.60  E-value=15  Score=34.78  Aligned_cols=102  Identities=23%  Similarity=0.316  Sum_probs=59.1

Q ss_pred             HHHHHHHhHHhhHHHHHHHHHhhhhcccCCCCCch-h--hh-Hhhhhhc------hhHHhhhHHHHHhHHHHHHHHHhhh
Q 019657          215 LQYQRENLHFLSEEILRLQECLSKYEQSDDGSTPQ-V--DL-AHLLAAR------DQELRTLSAEMNQLQSELRLARSFV  284 (337)
Q Consensus       215 IrYLkdhNa~LSkrIL~Lq~~l~kye~~~~gstpq-v--dl-~h~la~r------~qelRa~~Ae~~q~~~el~~ar~li  284 (337)
                      .++|.+.|..|..+|-.+....        |..+. +  .. ..+=+.|      -.|-..+-.+.+.++.|+...|.-+
T Consensus        20 Vr~LE~~N~~Le~~i~~~~~~~--------~~~~~~~~~~ye~el~~lr~~id~~~~eka~l~~e~~~l~~e~~~~r~k~   91 (312)
T PF00038_consen   20 VRFLEQENKRLESEIEELREKK--------GEEVSRIKEMYEEELRELRRQIDDLSKEKARLELEIDNLKEELEDLRRKY   91 (312)
T ss_dssp             HHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhhhHHHHHHHHhcc--------cccCcccccchhhHHHHhHHhhhhHHHHhhHHhhhhhhHHHHHHHHHHHH
Confidence            5788888888887777666553        11111 1  11 1222222      1222344444555555555555555


Q ss_pred             HHhHHHHHHHHhccHHHHHHHHHhhhccHHHHHHHHHhhh
Q 019657          285 AEREAEVLRVRNTNNQLERALEVERMSNIELQKKISTRRN  324 (337)
Q Consensus       285 ~er~~e~~~~r~~n~qle~ale~er~~~~~~~~~~~~~r~  324 (337)
                      .+-.+....+....+.+...++.+.+...+|+.++..+..
T Consensus        92 e~e~~~~~~le~el~~lrk~ld~~~~~r~~le~~i~~L~e  131 (312)
T PF00038_consen   92 EEELAERKDLEEELESLRKDLDEETLARVDLENQIQSLKE  131 (312)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhhhhhhhhhhhhHhHHHHHHHHHHH
Confidence            5566666667777777888999999999999988887765

They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....

>PRK09039 hypothetical protein; Validated

Probab=83.43  E-value=16  Score=36.36  Aligned_cols=7  Identities=43%  Similarity=0.373  Sum_probs=4.2

Q ss_pred             HHHHHHH
Q 019657          301 LERALEV  307 (337)
Q Consensus       301 le~ale~  307 (337)
                      |+.||..
T Consensus       181 L~~a~~~  187 (343)
T PRK09039        181 LNVALAQ  187 (343)
T ss_pred             HHHHHHH
Confidence            6666644

>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family

Probab=83.25  E-value=8.8  Score=37.43  Aligned_cols=89  Identities=17%  Similarity=0.266  Sum_probs=50.5

Q ss_pred             HHHHHHHHHhHHhhHHHHHHHHHhhhhcccCCCCCchhhhHhhhhhchhHHhhhHHHHHhHHHHHHHHHhhhHHhHHHHH
Q 019657          213 ALLQYQRENLHFLSEEILRLQECLSKYEQSDDGSTPQVDLAHLLAARDQELRTLSAEMNQLQSELRLARSFVAEREAEVL  292 (337)
Q Consensus       213 DLIrYLkdhNa~LSkrIL~Lq~~l~kye~~~~gstpqvdl~h~la~r~qelRa~~Ae~~q~~~el~~ar~li~er~~e~~  292 (337)
                      +-+.|+.+....+.+++-..+..+..|++......|+-...    +=.+.+..+.+++.+++.|+...++-..+.-.+++
T Consensus       170 ~a~~fl~~ql~~~~~~l~~ae~~l~~fr~~~~~~d~~~~~~----~~~~~i~~L~~~l~~~~~~l~~l~~~~~~~~P~v~  245 (362)
T TIGR01010       170 DTIAFAENEVKEAEQRLNATKAELLKYQIKNKVFDPKAQSS----AQLSLISTLEGELIRVQAQLAQLRSITPEQNPQVP  245 (362)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcChHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCchH
Confidence            55678888888888899999999999998855444443211    11112334455555555555555544444444444


Q ss_pred             HHHhccHHHHHHH
Q 019657          293 RVRNTNNQLERAL  305 (337)
Q Consensus       293 ~~r~~n~qle~al  305 (337)
                      .++..=.++++.+
T Consensus       246 ~l~~~i~~l~~~i  258 (362)
T TIGR01010       246 SLQARIKSLRKQI  258 (362)
T ss_pred             HHHHHHHHHHHHH
Confidence            4443333333333

This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.

>PRK10884 SH3 domain-containing protein; Provisional

Probab=82.71  E-value=6.4  Score=36.82  Aligned_cols=69  Identities=13%  Similarity=0.257  Sum_probs=35.9

Q ss_pred             hhhhchhHHhhhHHHHHhHHHHHHHHHh----hhHHhHHHHHHHHhccHHHHHHHHHhhhccHHHHHHHHHhh
Q 019657          255 LLAARDQELRTLSAEMNQLQSELRLARS----FVAEREAEVLRVRNTNNQLERALEVERMSNIELQKKISTRR  323 (337)
Q Consensus       255 ~la~r~qelRa~~Ae~~q~~~el~~ar~----li~er~~e~~~~r~~n~qle~ale~er~~~~~~~~~~~~~r  323 (337)
                      .+..=++|+-.+.+++++++++...-.+    .+++++..+..+...|.+|...|+.-+-.+-+|+.+...+.
T Consensus        94 rlp~le~el~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~  166 (206)
T PRK10884         94 RVPDLENQVKTLTDKLNNIDNTWNQRTAEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAANLQLDDKQ  166 (206)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344444554555555555444332222    22334555555888888887777665555555544444443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	337
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-06

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 47.9 bits (113), Expect = 3e-06
 Identities = 43/329 (13%), Positives = 88/329 (26%), Gaps = 100/329 (30%)

Query: 3   TERHASSSTSASPEENAMFLDILHEAPLLGHRKSHSIFGSVVYCFVLAGYAILAAGTTWI 62
           T R    +   S       + + H +  L   +  S+                     ++
Sbjct: 271 TTRFKQVTDFLSAA-TTTHISLDHHSMTLTPDEVKSLLLK------------------YL 311

Query: 63  FHPIHYLIPPLLCSCGVILLALTGIFQQYFVYQVQKIRLQGY-YSFSQKLKHIVRL---- 117
                 L P  + +     L++     +             + +    KL  I+      
Sbjct: 312 DCRPQDL-PREVLTTNPRRLSIIAESIRDG-----LATWDNWKHVNCDKLTTIIESSLNV 365

Query: 118 --P---------FAITAYGT--AAMLLVIVWRPHISILSISTLLRIIMLIEAICAASFMS 164
             P          ++         +LL ++W   I           +M++          
Sbjct: 366 LEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIK--------SDVMVVVNKL------ 411

Query: 165 VYIGYVHQYNSLNSQPDVMKSLYSPLQPSSSLEGLRYHDGGRLSDEQMALLQYQRENLHF 224
                 H+Y+ +  QP   +S  S                       + L   + EN + 
Sbjct: 412 ------HKYSLVEKQPK--ESTIS------------IPSI------YLELKV-KLENEYA 444

Query: 225 LSEEILRLQECLSKYEQSDDGSTPQVD------LA-HLLAA----RDQELRTLSAEMNQL 273
           L   I+        ++  DD   P +D      +  HL       R    R +  +   L
Sbjct: 445 LHRSIVDHYNIPKTFDS-DDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFL 503

Query: 274 QSELRLARSFVAEREAEVLRVRNTNNQLE 302
           + ++R   +      +    + NT  QL+
Sbjct: 504 EQKIRHDSTAWNASGS----ILNTLQQLK 528

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	337
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	82.66

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=82.66  E-value=11  Score=36.80  Aligned_cols=62  Identities=21%  Similarity=0.260  Sum_probs=48.2

Q ss_pred             hhHHHHHhHHHHHHHHHhhhHHhHHHHHHHHhccHHHHHHHHHhhhccHHHHHHHHHhhhcC
Q 019657          265 TLSAEMNQLQSELRLARSFVAEREAEVLRVRNTNNQLERALEVERMSNIELQKKISTRRNQH  326 (337)
Q Consensus       265 a~~Ae~~q~~~el~~ar~li~er~~e~~~~r~~n~qle~ale~er~~~~~~~~~~~~~r~~~  326 (337)
                      .+..+......++.....-++++..+.+.++..++++|+.+|..+-.-.|++++.+..+.+.
T Consensus       513 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~  574 (597)
T 3oja_B          513 HLKERQAFKLRETQARRTEADAKQKETEDLEQENIALEKQLDNKRAKQAELRQETSLKRQKV  574 (597)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHhhhhhhHHHHHHHHHhhhhhhcchhhHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Confidence            34444444556666677777888888888888899999999999999999999888887754

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00