Citrus Sinensis ID: 019716

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------
Protein Sequence
MSDREEAEKMNMSNMRLAFNADGAAVYKPVMPTPTQPPPPTADTYQPDVSLFHHQHQQQERGNQQHQVSSVSVSGLVEPAKRKRGRPRKYAPDGSNGSNMSVNLASPPPSAAAVAAVSSSSNSYKKARGRPPGSTTRKHTAAFGSAGVGFTPHVITVQAGEDVLAKIMSFSQNGPRAVCILSANGAISNVTLRQAMTSGGTVTYEGRFEILSLSGSILLSESGGQRSRTGGLSVSLAGPDGRVLGGGVAGLLTAASPVQVIIGSFLAEGWKESRSGMQPEPLSSSMPKFIPGASAVGSPPSRGNLSESSGGPGSPLNHSTGGGCSNSNPPSIPNMWK
Secondary Structure (PSIPRED)
cccHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEccccHHHHHHHHHHHcccccEEEEEEEcEEEEEEEEcccccccEEEEEEEEEEEEEEEcEEccccccccccccccEEEEccccccEEEcccccccEEcccEEEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccHHHHcccccccEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHccccccccccEEEEEcccHHHHHHHHHHHHccccEEEEEEcccEEEEEEEEcccccccEEEEEcEEEEEEEccccccccccccccccccEEEEEEcccccEEEccHHHHHEccccEEEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
MSDREEAEKMNMSNMRlafnadgaavykpvmptptqpppptadtyqpdvslfhhqhqqqergnqqhqVSSVsvsglvepakrkrgrprkyapdgsngsnmsvnlaspppsAAAVAAVSSssnsykkargrppgsttrkhtaafgsagvgftphviTVQAGEDVLAKIMSFSQNGPRAVCILSANGAISNVTLRQAMtsggtvtyEGRFEILSLSGSIllsesggqrsrtgglsvslagpdgrvlgggVAGLLTAASPVQVIIGSFLAEgwkesrsgmqpeplsssmpkfipgasavgsppsrgnlsessggpgsplnhstgggcsnsnppsipnmwk
Flexible Loop (DISEMBL)
MSDREEAEKMNMSNMRLAFNADGAAVYKPVMPTPTQPPPPTADTYQPDVSLFHHQHQQQergnqqhqvssvsvsglvepakrkrgrprkyapdgsngsnmSVNLASPPPSAAAVAAVssssnsykkargrppgsttrKHTAAFGSAGVGFTPHVITVQAGEDVLAKIMSFSQNGPRAVCILSANGAISNVTLRQAMTSGGTVTYEGRFEILSLSGSILLSESGGQRSRTGGLSVSLAGPDGRVLGGGVAGLLTAASPVQVIIGSFLAEGWKESRSGMQPEPLSSSMPKFIPGASAVGSPPSRGNLSESSGGPGSPLnhstgggcsnsnppsipnmwk
Low Complexity Region (SEG)
MSDREEAEKMNMSNMRLAFNADGAAVYKPVMptptqpppptadtyqpdVSLFhhqhqqqergnqqhqvssvsvsGLVEPAKRKRGRPRKYAPDGSNGSNMsvnlaspppsaaavaavssssnsYKKARGRPPGSTTRKHTAAFGSAGVGFTPHVITVQAGEDVLAKIMSFSQNGPRAVCILSANGAISNVTLRQAMTSGGTVTYEGRFeilslsgsillsesggQRSRTGGLSVSlagpdgrvlgggvaglltaaSPVQVIIGSFLAEGWKESRSGMQPEPLSSSMPKFIPGASAVGSPPSRgnlsessggpgsplnHSTGGGCSNSNPPSIPNMWK
Disordered region (IsUnstruct)
*********************************************************************************************************************************************AFGSAGVGFTPHVITVQAGEDVLAKIMSFSQNGPRAVCILSANGAISNVTLRQAMTSGGTVTYEGRFEILSLSGSILL****************LAGPDGRVLGGGVAGLLTAASPVQVIIGSFLAEGW*******************************************************************
Disordered Region (DISOPRED)
*****************************************************************************************YAP**************************************************FGSAGVGFTPHVITVQAGEDVLAKIMSFSQNGPRAVCILSANGAISNVTLRQAMTSGGTVTYEGRFEILSLSGSILLS********TGGLSVSLAGPDGRVLGGGVAGLLTAASPVQVIIGSFL***********************************************************************
Disordered Region (DISEMBL)
**********NMSNMRLAFNADGAAVYKPVMPTPTQPPPPTADTYQPDVSLFH******************************************NGSNMSVNLAS********************************HTAAFGSAGVGFTPHVITVQAGEDVLAKIMSFSQNGPRAVCILSANGAISNVTLRQAMTSGGTVTYEGRFEILSLSGSILL*************SVSLAGPDGRVLGGGVAGLLTAASPVQVIIGSFLAEGWK***********SSSMPKFIPGAS*******************************NSNPPSIPNMWK
Disordered Region (DISPRO)
***********MSNMRLAFNADGAAVYKPVMP************************************************************************************************************AAFGSAGVGFTPHVITVQAGEDVLAKIMSFSQNGPRAVCILSANGAISNVTLRQAMTSGGTVTYEGRFEILSLSGSILLSESGGQRSRTGGLSVSLAGPDGRVLGGGVAGLLTAASPVQVIIGSFLAEGW*******************************************************************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSDREEAEKMNMSNMRLAFNADGAAVYKPVMPTPTQPPPPTADTYQPDVSLFHHQHQQQERGNQQHQVSSVSVSGLVEPAKRKRGRPRKYAPDGSNGSNMSVNLASPPPSAAAVAAVSSSSNSYKKARGRPPGSTTRKHTAAFGSAGVGFTPHVITVQAGEDVLAKIMSFSQNGPRAVCILSANGAISNVTLRQAMTSGGTVTYEGRFEILSLSGSILLSESGGQRSRTGGLSVSLAGPDGRVLGGGVAGLLTAASPVQVIIGSFLAEGWKESRSGMQPEPLSSSMPKFIPGASAVGSPPSRGNLSESSGGPGSPLNHSTGGGCSNSNPPSIPNMWK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	337	2.2.26 [Sep-21-2011]
Q9S7C9	311	Putative DNA-binding prot	no	no	0.430	0.466	0.383	2e-10

>sp|Q9S7C9|ESCA_ARATH Putative DNA-binding protein ESCAROLA OS=Arabidopsis thaliana GN=ESC PE=2 SV=1

 Score = 67.4 bits (163), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 61/159 (38%), Positives = 87/159 (54%), Gaps = 14/159 (8%)

Query: 118 SSSSNSYKKARGRPPGSTTRKHTAAFGSAGV--GFTPHVITVQAGEDVLAKIMSFSQNGP 175
           +SSS   K+ RGRPPGS  +       +         HV+ V  G D++  + ++++   
Sbjct: 79  TSSSAPGKRPRGRPPGSKNKAKPPIIVTRDSPNALRSHVLEVSPGADIVESVSTYARRRG 138

Query: 176 RAVCILSANGAISNVTLRQAMT---------SGGTVTYEGRFEILSLSGSILLSESGGQR 226
           R V +L  NG +SNVTLRQ +T          GG VT  GRFEILSL+G++L   +    
Sbjct: 139 RGVSVLGGNGTVSNVTLRQPVTPGNGGGVSGGGGVVTLHGRFEILSLTGTVLPPPA---P 195

Query: 227 SRTGGLSVSLAGPDGRVLGGGVAGLLTAASPVQVIIGSF 265
              GGLS+ LAG  G+V+GG V   L A++PV ++  SF
Sbjct: 196 PGAGGLSIFLAGGQGQVVGGSVVAPLIASAPVILMAASF 234

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	337
225457646	353	PREDICTED: uncharacterized protein LOC10	0.902	0.861	0.615	1e-86
147809818	390	hypothetical protein VITISV_030792 [Viti	0.899	0.776	0.611	5e-86
255583444	346	DNA binding protein, putative [Ricinus c	0.899	0.875	0.584	2e-78
449455639	351	PREDICTED: uncharacterized protein LOC10	0.908	0.871	0.592	5e-77
224061839	277	predicted protein [Populus trichocarpa]	0.786	0.956	0.620	1e-76
255539322	374	DNA binding protein, putative [Ricinus c	0.919	0.828	0.550	3e-76
449522157	364	PREDICTED: uncharacterized LOC101211767	0.899	0.832	0.559	7e-75
448872670	362	putative AT-hook DNA-binding protein [El	0.905	0.842	0.569	8e-75
449458061	364	PREDICTED: uncharacterized protein LOC10	0.899	0.832	0.556	2e-74
223947063	376	unknown [Zea mays] gi|223947407|gb|ACN27	0.919	0.824	0.522	4e-74

>gi|225457646|ref|XP_002275328.1| PREDICTED: uncharacterized protein LOC100263332 [Vitis vinifera] gi|297745600|emb|CBI40765.3| unnamed protein product [Vitis vinifera]

 Score =  326 bits (835), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 213/346 (61%), Positives = 246/346 (71%), Gaps = 42/346 (12%)

Query: 12  MSNMRLAFNADGAAVYKPVMPT--PTQPPPPTADTYQPDVSLFHHQHQQQERGNQQHQVS 69
           + NMRLAF+ DGAAVYKPV  T  P Q    T        ++  H               
Sbjct: 30  IQNMRLAFSPDGAAVYKPVSGTSPPYQSSGGTGGDGSTGGAIIPH--------------- 74

Query: 70  SVSVSGLVEPAKRKRGRPRKYAPDGSNGSNMSVNLASPPPSAAAVA------------AV 117
            ++++   EP KRKRGRPRKY PDG+    M++ L SP PS   V+            A 
Sbjct: 75  GLNMNMGSEPLKRKRGRPRKYGPDGT----MALAL-SPAPSGVNVSQSGGAFSSPPASAG 129

Query: 118 SSSSNSYKKARGRPPGSTTRKHTAAFGSAGVGFTPHVITVQAGEDVLAKIMSFSQNGPRA 177
           S+S +S KKARGRPPGS+ ++   A GSAGVGFTPHVITV+AGEDV +KIMSFSQ+GPRA
Sbjct: 130 SASPSSLKKARGRPPGSSKKQQMEALGSAGVGFTPHVITVKAGEDVSSKIMSFSQHGPRA 189

Query: 178 VCILSANGAISNVTLRQAMTSGGTVTYEGRFEILSLSGSILLSESGGQRSRTGGLSVSLA 237
           VCILSANGAISNVTLRQ  TSGGTVTYEGRFEILSLSGS LLSE+GGQRSRTGGLSVSL+
Sbjct: 190 VCILSANGAISNVTLRQPATSGGTVTYEGRFEILSLSGSFLLSENGGQRSRTGGLSVSLS 249

Query: 238 GPDGRVLGGGVAGLLTAASPVQVIIGSFLAEGWKESRSGMQPEPLSSSMPKFIP-----G 292
           GPDGRVLGGGVAGLLTAASPVQV++GSF+A+G KES+S  Q EP SS+ PK  P     G
Sbjct: 250 GPDGRVLGGGVAGLLTAASPVQVVVGSFIADGRKESKSASQVEP-SSAPPKIAPVGGGGG 308

Query: 293 ASAVGSPPSRGNLSESSGGPGSPLNHSTGGGCSNSNPPSIPNM-WK 337
            +   SPPSRG LSESSGGPGSPLN ST G C+NSNPP + ++ WK
Sbjct: 309 VTGTSSPPSRGTLSESSGGPGSPLNQST-GACNNSNPPGMTSIPWK 353

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147809818|emb|CAN64876.1| hypothetical protein VITISV_030792 [Vitis vinifera]

 Score =  324 bits (830), Expect = 5e-86,   Method: Compositional matrix adjust.
 Identities = 211/345 (61%), Positives = 243/345 (70%), Gaps = 42/345 (12%)

Query: 12  MSNMRLAFNADGAAVYKPVMPT--PTQPPPPTADTYQPDVSLFHHQHQQQERGNQQHQVS 69
           + NMRLAF+ DGAAVYKPV  T  P Q    T        ++  H               
Sbjct: 30  IQNMRLAFSPDGAAVYKPVSGTSPPYQSSGGTGGDGSTGGAIIPH--------------- 74

Query: 70  SVSVSGLVEPAKRKRGRPRKYAPDGSNGSNMSVNLASPPPSAAAVA------------AV 117
            ++++   EP KRKRGRPRKY PDG+    M++ L SP PS   V+            A 
Sbjct: 75  GLNMNMGSEPLKRKRGRPRKYGPDGT----MALAL-SPAPSGVNVSQSGGAFSSPPASAG 129

Query: 118 SSSSNSYKKARGRPPGSTTRKHTAAFGSAGVGFTPHVITVQAGEDVLAKIMSFSQNGPRA 177
           S+S +S KKARGRPPGS+ ++   A GSAGVGFTPHVITV+AGEDV +KIMSFSQ+GPRA
Sbjct: 130 SASPSSLKKARGRPPGSSKKQQMEALGSAGVGFTPHVITVKAGEDVSSKIMSFSQHGPRA 189

Query: 178 VCILSANGAISNVTLRQAMTSGGTVTYEGRFEILSLSGSILLSESGGQRSRTGGLSVSLA 237
           VCILSANGAISNVTLRQ  TSGGTVTYEGRFEILSLSGS LLSE+GGQRSRTGGLSVSL+
Sbjct: 190 VCILSANGAISNVTLRQPATSGGTVTYEGRFEILSLSGSFLLSENGGQRSRTGGLSVSLS 249

Query: 238 GPDGRVLGGGVAGLLTAASPVQVIIGSFLAEGWKESRSGMQPEPLSSSMPKFIPGASAVG 297
           GPDGRVLGGGVAGLLTAASPVQV++GSF+A+G KES+S  Q EP SS+ PK  P     G
Sbjct: 250 GPDGRVLGGGVAGLLTAASPVQVVVGSFIADGRKESKSASQVEP-SSAPPKIAPVGGGGG 308

Query: 298 S-----PPSRGNLSESSGGPGSPLNHSTGGGCSNSNPPSIPNM-W 336
                 PPSRG LSESSGGPGSPLN ST G C+NSNPP + ++ W
Sbjct: 309 VTGTSSPPSRGTLSESSGGPGSPLNQST-GACNNSNPPGMTSIPW 352

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255583444|ref|XP_002532481.1| DNA binding protein, putative [Ricinus communis] gi|223527806|gb|EEF29905.1| DNA binding protein, putative [Ricinus communis]

 Score =  298 bits (764), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 194/332 (58%), Positives = 222/332 (66%), Gaps = 29/332 (8%)

Query: 17  LAFNADGAAVYKPVMPTPTQPPPPTADTYQPDVSLFHHQHQQQERGNQQHQVSSVSVSGL 76
           LAF ADG+ VYKP+MP     P    + +   V L ++ HQ    G        + +  L
Sbjct: 33  LAFRADGS-VYKPIMP-----PTDDGNPFH-HVPLHYNHHQDMMVGGGGGGGIGIGLDAL 85

Query: 77  ------VEPAKRKRGRPRKYAPDGSNGSNMSVNLASPPPSAAAVAAVSS---SSNSYKKA 127
                  EP KRKRGRPRKY+P      + +++L SPP          S   SS + KKA
Sbjct: 86  NMNNNHSEPIKRKRGRPRKYSPP----PHGNIDLTSPPQHQLYQCGFQSPTPSSTAPKKA 141

Query: 128 RGRPPGSTTRKHTAAFGSAGVGFTPHVITVQAGEDVLAKIMSFSQNGPRAVCILSANGAI 187
           RGRPPGS  + H    GS G GFTPHVI V+AGEDVL KIMSFSQNGPR VCILSA G I
Sbjct: 142 RGRPPGSARKNHLPNLGSGGTGFTPHVIFVKAGEDVLLKIMSFSQNGPRGVCILSAYGTI 201

Query: 188 SNVTLRQAMTSGGTVTYEGRFEILSLSGSILLSESGGQRSRTGGLSVSLAGPDGRVLGGG 247
           SNVTLRQA T GGTVTYEGRFEILSLSGS LLSE+ GQRSRTGGLSV L+GPDGRVLGGG
Sbjct: 202 SNVTLRQATTIGGTVTYEGRFEILSLSGSFLLSENSGQRSRTGGLSVLLSGPDGRVLGGG 261

Query: 248 VAGLLTAASPVQVIIGSFLAEGWKESRSGM-QPEPLSSSMPKFIPGASAVGSPPSRGNLS 306
           VAGLLTAAS VQVI+GSF++E  K S+  + Q E +S+      PGAS  GSPPSRG  S
Sbjct: 262 VAGLLTAASSVQVIVGSFISEDSKGSKLWINQHETMSA------PGASVAGSPPSRGTFS 315

Query: 307 ESSGGPGSPLNHSTGGGCSNSNPPSIPNM-WK 337
           ESSGGPGSP N ST G C+NSN   +PN+ WK
Sbjct: 316 ESSGGPGSPPNQST-GACNNSNTQGMPNVAWK 346

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449455639|ref|XP_004145559.1| PREDICTED: uncharacterized protein LOC101207513 [Cucumis sativus] gi|449522960|ref|XP_004168493.1| PREDICTED: uncharacterized LOC101207513 [Cucumis sativus]

 Score =  293 bits (751), Expect = 5e-77,   Method: Compositional matrix adjust.
 Identities = 202/341 (59%), Positives = 226/341 (66%), Gaps = 35/341 (10%)

Query: 12  MSNMRLAFNADGAAVYKPVMPTPTQPPPPTADTYQPDVSLFHHQHQQQERGNQQHQVSSV 71
           M +M L F ADG  VYKPV    T  P     TYQ   S           G+ +     V
Sbjct: 31  MQSMHLPFGADG--VYKPVA---TASP-----TYQ--SSSVGVAGNAGADGSARDAF--V 76

Query: 72  SVSGLVEPAKRKRGRPRKYAPDGS---------NGSNMSVNLASPPPSAAAVAAVSSSSN 122
           +++   EP KRKRGRPRKY PDGS           +  S    SP P+AA  +  S+S  
Sbjct: 77  NMNSQSEPVKRKRGRPRKYGPDGSMAVAPAVRPAAATQSSGGFSPSPTAAPQSGRSASPT 136

Query: 123 SYKKARGRPPGSTTRKHTAAFG-SAGVGFTPHVITVQAGEDVLAKIMSFSQNGPRAVCIL 181
           S KK RGRPPGS+T+KH      SAGVGFTPHVITV+AGEDV +KIMSFSQNGPRAVCIL
Sbjct: 137 SLKKPRGRPPGSSTKKHHLDTSESAGVGFTPHVITVKAGEDVSSKIMSFSQNGPRAVCIL 196

Query: 182 SANGAISNVTLRQAMTSGGTVTYEGRFEILSLSGSILLSESGGQRSRTGGLSVSLAGPDG 241
           +ANGAISNVTLRQ   SGGTVTYEGRFEILSLSGS LLSE+GGQRSRTGGLSVSL+GPDG
Sbjct: 197 TANGAISNVTLRQPAMSGGTVTYEGRFEILSLSGSYLLSENGGQRSRTGGLSVSLSGPDG 256

Query: 242 RVLGGGVAGLLTAASPVQVIIGSFLAE-GWKESRSGMQPEPLSSSMP-KFIP---GASAV 296
           RVLGGGVAGLLTAASPVQV++GSF+ + G KE R   Q E    S P K  P   G +  
Sbjct: 257 RVLGGGVAGLLTAASPVQVVVGSFVTDGGHKELRQVNQIEQPPVSAPHKLAPIRAGMTGA 316

Query: 297 GSPPSRGNLSESSGGPGSPLNHSTGGGCSNSNPPSIPNMWK 337
            SPPSRG LSESSGGPGSP N S  G C+N+  P     WK
Sbjct: 317 SSPPSRGTLSESSGGPGSPFNQSA-GACNNNTIP-----WK 351

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224061839|ref|XP_002300624.1| predicted protein [Populus trichocarpa] gi|222842350|gb|EEE79897.1| predicted protein [Populus trichocarpa]

 Score =  293 bits (749), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 172/277 (62%), Positives = 202/277 (72%), Gaps = 12/277 (4%)

Query: 64  QQHQVSSVSVSGLVEPAKRKRGRPRKYAPDGSNGSNMSVNLASPPPSAAAVAAVSSSSNS 123
           Q   V+ ++ SGL  P  + + + +   P  S GS+  V +A P    A     S S   
Sbjct: 10  QSVAVTPLTSSGLSSPPAQAQAQVQPLVPTPSPGSD--VGVAGP----AVALGGSVSPTG 63

Query: 124 YKKARGRPPGSTTRKHTAAFGSAGVGFTPHVITVQAGEDVLAKIMSFSQNGPRAVCILSA 183
            KKARGRPPGS+ ++   A GSAG+GFTPHVITV+AGEDV +KIMSFSQ+GPRAVCILSA
Sbjct: 64  VKKARGRPPGSSKKQQLDALGSAGIGFTPHVITVKAGEDVSSKIMSFSQHGPRAVCILSA 123

Query: 184 NGAISNVTLRQAMTSGGTVTYEGRFEILSLSGSILLSESGGQRSRTGGLSVSLAGPDGRV 243
           NGAISNVTLRQ  TSGGTVTYEGRFEIL+LSGS L SE+GGQRSR+GGLSV L+GPDGRV
Sbjct: 124 NGAISNVTLRQQATSGGTVTYEGRFEILALSGSYLPSENGGQRSRSGGLSVCLSGPDGRV 183

Query: 244 LGGGVAGLLTAASPVQVIIGSFLAEGWKESRSGMQPEPLSSSMPKFIP--GASAVGSPPS 301
           LGG VAGLL AA+PVQV++ SF+A+G K S+S    EP SS+  K  P  G++ V SPPS
Sbjct: 184 LGGSVAGLLMAAAPVQVVVSSFIADGRKVSKSANHMEP-SSATSKLPPTGGSTGVSSPPS 242

Query: 302 RGNLSESSGGPGSPLNHSTGGGCSNSNPPSIPNM-WK 337
           RG LSESSGGPGSPLN ST  G  N+NP  I NM WK
Sbjct: 243 RGTLSESSGGPGSPLNQST--GACNNNPQGISNMPWK 277

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255539322|ref|XP_002510726.1| DNA binding protein, putative [Ricinus communis] gi|223551427|gb|EEF52913.1| DNA binding protein, putative [Ricinus communis]

 Score =  291 bits (744), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 201/365 (55%), Positives = 237/365 (64%), Gaps = 55/365 (15%)

Query: 12  MSNMRLAFNADGAAVYKPVMPTPTQPPPPTADTYQPDVSLFHHQHQQQERGNQQHQVSSV 71
           + NMRLAF ADG++VYKP M T T  P     +YQP  S         E G+    V+  
Sbjct: 26  IQNMRLAFGADGSSVYKP-MTTATNSP-----SYQPSPSA-ASPGGFVEGGSLGINVNMG 78

Query: 72  SVSGLVEPAKRKRGRPRKYAPDGSNGSNMSVNLASPP----------------PSAAAVA 115
           S +   +  KRKRGRPRKY PDG+    M++ L S P                P++AA  
Sbjct: 79  SGN---DAMKRKRGRPRKYGPDGT----MALALVSAPQSVGITQPAGGGGFSTPTSAAAT 131

Query: 116 AVSSSSNSY--------------------KKARGRPPGSTTRKHTAAFGSAGVGFTPHVI 155
           +V  S+ +                     KK RGRPPGS  ++   A GSAG GFTPH+I
Sbjct: 132 SVGPSTTTIAANPSLPSGSGGGSVSPTGIKKGRGRPPGSNKKQQLEALGSAGFGFTPHII 191

Query: 156 TVQAGEDVLAKIMSFSQNGPRAVCILSANGAISNVTLRQAMTSGGTVTYEGRFEILSLSG 215
           TV+AGEDV +KIMSFSQ+GPRAVCILSANGAISNVTLRQ  TSGG+VTYEGRFEILSLSG
Sbjct: 192 TVKAGEDVSSKIMSFSQHGPRAVCILSANGAISNVTLRQPATSGGSVTYEGRFEILSLSG 251

Query: 216 SILLSESGGQRSRTGGLSVSLAGPDGRVLGGGVAGLLTAASPVQVIIGSFLAEGWKESRS 275
           S L SE+GGQRSRTGGLSVSL+GPDGRVLGGGVAGLL AASPVQV++ SF+++  KE +S
Sbjct: 252 SFLPSENGGQRSRTGGLSVSLSGPDGRVLGGGVAGLLLAASPVQVVVASFISDDRKELKS 311

Query: 276 GMQPEPLSSSMPKFIP--GASAVGSPPSRGNLSESSGGPGSPLNHSTGGGCSNSNPPSIP 333
               EPL S+M +  P  G +   SPPSRG  SESSGGPGSPLN ST G C+NSN   I 
Sbjct: 312 PNHLEPL-SAMNRLTPVMGTTGPSSPPSRGTFSESSGGPGSPLNQST-GACNNSNLQGIS 369

Query: 334 NM-WK 337
           +M WK
Sbjct: 370 SMPWK 374

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449522157|ref|XP_004168094.1| PREDICTED: uncharacterized LOC101211767 [Cucumis sativus]

 Score =  286 bits (733), Expect = 7e-75,   Method: Compositional matrix adjust.
 Identities = 189/338 (55%), Positives = 223/338 (65%), Gaps = 35/338 (10%)

Query: 14  NMRLAFNADGAAVYKPVMPTPTQPPPPTADTYQPDVSLFHHQHQQQERGNQQHQVSSVSV 73
           NMRLAF ADG   YKPV P+       T+ +YQ  ++        +          S+  
Sbjct: 32  NMRLAFGADGTG-YKPVTPS-------TSPSYQSSMAGVSGNAGIEGSAGGGGGGGSMLP 83

Query: 74  SGL------VEPAKRKRGRPRKYAPDGSNGSNMSVNLASPPPS----------AAAVAAV 117
            G        E  KRKRGRPRKY PDGS    M++ L S PPS          A + +  
Sbjct: 84  HGFNINSVGSEQIKRKRGRPRKYGPDGS----MALALGSGPPSGTGCFPPSNMANSASEA 139

Query: 118 SSSSNSYKKARGRPPGSTTRKHTAAFGSAGVGFTPHVITVQAGEDVLAKIMSFSQNGPRA 177
             S NS KK +GRP GS  ++   A GSAG+GFTPHVI V+AGEDV +KIMSFSQNGPRA
Sbjct: 140 LGSPNSSKKTKGRPLGSKKKQQLEALGSAGIGFTPHVIDVKAGEDVSSKIMSFSQNGPRA 199

Query: 178 VCILSANGAISNVTLRQAMTSGGTVTYEGRFEILSLSGSILLSESGGQRSRTGGLSVSLA 237
           +CILSANG+ISNVTLRQ  TSGGTVTYEGRFEILSLSGS LLSE+GGQRSRTGGLSVSL+
Sbjct: 200 ICILSANGSISNVTLRQPATSGGTVTYEGRFEILSLSGSFLLSENGGQRSRTGGLSVSLS 259

Query: 238 GPDGRVLGGGVAGLLTAASPVQVIIGSFLAEGWKESRSGMQPEPLSSSMPKFIPGA---- 293
           GPDGRVLGG VAGLLTA SPVQV++GSF+A+G KE +   Q E L++++P          
Sbjct: 260 GPDGRVLGGSVAGLLTALSPVQVVVGSFIADGNKEPKPARQNE-LTTALPMLNTAGFGHL 318

Query: 294 SAVGSPPSRGNLSESSGG-PGSPLNHSTGGGCSNSNPP 330
           +   S PS G LSESS G P SPLN+S+ GGC+NSN P
Sbjct: 319 TGGASSPSHGTLSESSDGSPDSPLNNSS-GGCNNSNHP 355

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|448872670|gb|AGE46020.1| putative AT-hook DNA-binding protein [Elaeis guineensis]

 Score =  286 bits (733), Expect = 8e-75,   Method: Compositional matrix adjust.
 Identities = 202/355 (56%), Positives = 233/355 (65%), Gaps = 50/355 (14%)

Query: 11  NMSNMRLAFNADGAAVYKPVMPTPTQPPPPTADTYQPDVSLFHHQHQQQERGNQQHQVSS 70
           +M +MRLAF  DG A+YKP+             +  P              G      ++
Sbjct: 30  SMQSMRLAFAPDGTAIYKPI-----------TTSSPPPPPYQGGGGAGSTGGGDGPSPAA 78

Query: 71  VSVSGLV----EPAKRKRGRPRKYAPDGSNGSNMSVNLASPPPSAAAVA----------- 115
           ++  GL     EP KRKRGRPRKY PDG+    MS+ L +  P+AA              
Sbjct: 79  ITPHGLNINVGEPVKRKRGRPRKYGPDGT----MSLALTTVSPTAAVSPGSGGFSPSSAG 134

Query: 116 ----AVSSSSNSYKKARGRPPGSTTRKHTAAFGSAGVGFTPHVITVQAGEDVLAKIMSFS 171
               A S+S+ + KKARGRPPGS  ++  AA GSAG+GFTPHVITV+AGEDV +KIMSFS
Sbjct: 135 AGNPASSASAEAMKKARGRPPGSGKKQQLAALGSAGIGFTPHVITVKAGEDVSSKIMSFS 194

Query: 172 QNGPRAVCILSANGAISNVTLRQAMTSGGTVTYEGRFEILSLSGSILLSESGGQRSRTGG 231
           Q+GPRAVCILSANGAISNVTLRQA TSGGTVTYEGRFEILSLSGS LLSESGGQRSRTGG
Sbjct: 195 QHGPRAVCILSANGAISNVTLRQAATSGGTVTYEGRFEILSLSGSFLLSESGGQRSRTGG 254

Query: 232 LSVSLAGPDGRVLGGGVAGLLTAASPVQVIIGSFLAEGWKESRSGMQPEPLSSSMPKFIP 291
           LSVSLAGPDGRVLGGGVAGLLTAASPVQV++GSF+A+G KE      P+  + S P   P
Sbjct: 255 LSVSLAGPDGRVLGGGVAGLLTAASPVQVVVGSFIADGKKE------PKHTAPSDPTLAP 308

Query: 292 G-------ASAVGSPPSRGNL-SESSGGPGSPLNHSTGGGCSNSNPPSIPNM-WK 337
           G       A+   SPPSRG L   S GGPGSPLN ST G C+NSN   + NM WK
Sbjct: 309 GKLAAGGAAAGANSPPSRGTLSESSGGGPGSPLNQST-GTCNNSNQQGLSNMPWK 362

Source: Elaeis guineensis

Species: Elaeis guineensis

Genus: Elaeis

Family: Arecaceae

Order: Arecales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449458061|ref|XP_004146766.1| PREDICTED: uncharacterized protein LOC101211767 [Cucumis sativus]

 Score =  285 bits (730), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 188/338 (55%), Positives = 223/338 (65%), Gaps = 35/338 (10%)

Query: 14  NMRLAFNADGAAVYKPVMPTPTQPPPPTADTYQPDVSLFHHQHQQQERGNQQHQVSSVSV 73
           NMRLAF ADG   YKPV P+       T+ +YQ  ++        +          S+  
Sbjct: 32  NMRLAFGADGTG-YKPVTPS-------TSPSYQSSMAGVSGNAGIEGSAGGGGGGGSMLP 83

Query: 74  SGL------VEPAKRKRGRPRKYAPDGSNGSNMSVNLASPPPS----------AAAVAAV 117
            G        E  KRKRGRPRKY PDGS    M++ L S PPS          A + +  
Sbjct: 84  HGFNINSVGSEQIKRKRGRPRKYGPDGS----MALALGSGPPSGTGCFPPSNMANSASEA 139

Query: 118 SSSSNSYKKARGRPPGSTTRKHTAAFGSAGVGFTPHVITVQAGEDVLAKIMSFSQNGPRA 177
             S NS KK +GRP GS  ++   A GSAG+GFTPHVI V+AGEDV +KIMSFSQNGPRA
Sbjct: 140 LGSPNSSKKTKGRPLGSKKKQQLEALGSAGIGFTPHVIDVKAGEDVSSKIMSFSQNGPRA 199

Query: 178 VCILSANGAISNVTLRQAMTSGGTVTYEGRFEILSLSGSILLSESGGQRSRTGGLSVSLA 237
           +CILSANG+ISNVTLRQ  TSGGTVTYEGRF+ILSLSGS LLSE+GGQRSRTGGLSVSL+
Sbjct: 200 ICILSANGSISNVTLRQPATSGGTVTYEGRFQILSLSGSFLLSENGGQRSRTGGLSVSLS 259

Query: 238 GPDGRVLGGGVAGLLTAASPVQVIIGSFLAEGWKESRSGMQPEPLSSSMPKFIPGA---- 293
           GPDGRVLGG VAGLLTA SPVQV++GSF+A+G KE +   Q E L++++P          
Sbjct: 260 GPDGRVLGGSVAGLLTALSPVQVVVGSFIADGNKEPKPARQNE-LTTALPMLNTAGFGHL 318

Query: 294 SAVGSPPSRGNLSESSGG-PGSPLNHSTGGGCSNSNPP 330
           +   S PS G LSESS G P SPLN+S+ GGC+NSN P
Sbjct: 319 TGGASSPSHGTLSESSDGSPDSPLNNSS-GGCNNSNHP 355

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|223947063|gb|ACN27615.1| unknown [Zea mays] gi|223947407|gb|ACN27787.1| unknown [Zea mays] gi|224029909|gb|ACN34030.1| unknown [Zea mays] gi|414869452|tpg|DAA48009.1| TPA: AT-hook protein 1 isoform 1 [Zea mays] gi|414869453|tpg|DAA48010.1| TPA: AT-hook protein 1 isoform 2 [Zea mays] gi|414869454|tpg|DAA48011.1| TPA: AT-hook protein 1 isoform 3 [Zea mays] gi|414869455|tpg|DAA48012.1| TPA: AT-hook protein 1 isoform 4 [Zea mays] gi|414869456|tpg|DAA48013.1| TPA: AT-hook protein 1 isoform 5 [Zea mays]

 Score =  284 bits (727), Expect = 4e-74,   Method: Compositional matrix adjust.
 Identities = 187/358 (52%), Positives = 222/358 (62%), Gaps = 48/358 (13%)

Query: 12  MSNMRLAFNADGAAVYKPVMPTPTQPPPPTADTYQPDVSLFHHQHQQQERGNQQHQVSSV 71
           M ++R+A+ +DG AV+ P+  +   P      +YQP         Q    G      + +
Sbjct: 35  MQSVRMAYTSDGTAVFAPMRSSAATP------SYQP---------QGAAHGASMSAATII 79

Query: 72  SVSG------LVEPA-KRKRGRPRKYAPDGS-----------NGSNMSVNLASPPPSAAA 113
             +G      + EP  K+KRGRPRKY PDGS            GS  +   +S P S A 
Sbjct: 80  GGNGAAAAPSMGEPVPKKKRGRPRKYGPDGSMALALVPVSAATGSPTTGQGSSGPFSPAG 139

Query: 114 VAAVSS----SSNSYKKARGRPPGSTTRKHTAAFGSAGVGFTPHVITVQAGEDVLAKIMS 169
               +S    S + +KK RGRP GST +    A GS+G GFTPHVITVQAGEDV +KIMS
Sbjct: 140 SNLTNSLLVASPDGFKK-RGRPKGSTNKPRMDAAGSSGAGFTPHVITVQAGEDVSSKIMS 198

Query: 170 FSQNGPRAVCILSANGAISNVTLRQAMTSGGTVTYEGRFEILSLSGSILLSESGGQRSRT 229
           FSQ+GPRAVC+LSANGAISNVTLRQ  TSGGTVTYEGRFEILSLSGS LL E GGQRSRT
Sbjct: 199 FSQHGPRAVCVLSANGAISNVTLRQTATSGGTVTYEGRFEILSLSGSFLLVEDGGQRSRT 258

Query: 230 GGLSVSLAGPDGRVLGGGVAGLLTAASPVQVIIGSFLAEGWKESR----SGMQPEPLSSS 285
           GGLSVSLAGPDGRVLGGGVAGLL AASPVQ+++GSF + G KE++    SG  P PL  +
Sbjct: 259 GGLSVSLAGPDGRVLGGGVAGLLVAASPVQIVLGSFNSGGKKEAKKHAPSGPTPAPLKVA 318

Query: 286 MPKFIPGASAVGSPPSR-GNLSESSGGPGS---PLNHSTGGGCSNSNPPSIPNM--WK 337
            P          SPPSR G LSESSGG GS   PL+       SN  PP + ++  WK
Sbjct: 319 PPTTTRMGPNSSSPPSRGGTLSESSGGAGSPPPPLHQGMAASSSNDQPPFLSSIMPWK 376

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	337
TAIR|locus:2051038	351	AT2G33620 [Arabidopsis thalian	0.750	0.720	0.430	1.5e-44
TAIR|locus:2141045	439	AT4G17950 [Arabidopsis thalian	0.525	0.403	0.430	2.2e-36
TAIR|locus:2153142	419	AHL4 "AT-HOOK MOTIF NUCLEAR LO	0.379	0.305	0.519	5.6e-34
TAIR|locus:2122684	404	AHL3 "AT-HOOK MOTIF NUCLEAR LO	0.445	0.371	0.450	2.4e-33
TAIR|locus:2178505	386	AT5G46640 [Arabidopsis thalian	0.649	0.567	0.377	6.7e-33
TAIR|locus:2050766	348	AT2G45850 [Arabidopsis thalian	0.528	0.511	0.404	2.6e-31
TAIR|locus:2118091	356	AHL1 "AT-hook motif nuclear-lo	0.554	0.525	0.412	1.4e-30
TAIR|locus:2126946	318	AT4G00200 [Arabidopsis thalian	0.364	0.386	0.471	4.2e-30
TAIR|locus:2132599	334	AT4G22770 [Arabidopsis thalian	0.643	0.649	0.348	2.4e-28
TAIR|locus:2098861	354	AT3G61310 [Arabidopsis thalian	0.519	0.494	0.382	1.7e-27

TAIR|locus:2051038 AT2G33620 [Arabidopsis thaliana (taxid:3702)]

 Score = 469 (170.2 bits), Expect = 1.5e-44, P = 1.5e-44
 Identities = 114/265 (43%), Positives = 139/265 (52%)

Query:    78 EPAKRKRGRPRKYAPDGSNGSNMXXXXXXXXXXXXXXXXXXXXXXXYKKARGRPPGSTTR 137
             EP K++RGRPRKY PD      M                        KK RGRPPGS+++
Sbjct:    94 EPVKKRRGRPRKYGPDSGE---MSLGLNPGAPSFTVSQPSSGGDGGEKK-RGRPPGSSSK 149

Query:   138 K-HTAAFGSAGVGFTPHVITVQAGEDVLAKIMSFSQNGPRAVCILSANGAISNVTLRQAM 196
             +    A GS G+GFTPHV+TV AGEDV +KIM+ + NGPRAVC+LSANGAISNVTLRQ+ 
Sbjct:   150 RLKLQALGSTGIGFTPHVLTVLAGEDVSSKIMALTHNGPRAVCVLSANGAISNVTLRQSA 209

Query:   197 TSGGTVTYEGRFXXXXXXXXXXXXXXXXQRSRTGGLSVSXXXXXXXXXXXXXXXXXXXXS 256
             TSGGTVTYEGRF                QRSRTGGLSVS                    S
Sbjct:   210 TSGGTVTYEGRFEILSLSGSFHLLENNGQRSRTGGLSVSLSSPDGNVLGGSVAGLLIAAS 269

Query:   257 PVQVIIGSFLAEGWKESRSGMQPEPLSSS-MPKFIPGASAV--GSPPSRXXXXXXXXXXX 313
             PVQ+++GSFL +G KE +  +    LSS  +P+  P    +   SP SR           
Sbjct:   270 PVQIVVGSFLPDGEKEPKQHVGQMGLSSPVLPRVAPTQVLMTPSSPQSRGTMSESSCGGG 329

Query:   314 XXX-XHSTGGGCSNSNPPSIPNMWK 337
                  H + GG  N N  ++P  WK
Sbjct:   330 HGSPIHQSTGGPYN-NTINMP--WK 351

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005829 "cytosol" evidence=IDA

GO:0007389 "pattern specification process" evidence=RCA

GO:0048438 "floral whorl development" evidence=RCA

GO:0048439 "flower morphogenesis" evidence=RCA

TAIR|locus:2141045 AT4G17950 [Arabidopsis thaliana (taxid:3702)]

 Score = 334 (122.6 bits), Expect = 2.2e-36, Sum P(2) = 2.2e-36
 Identities = 80/186 (43%), Positives = 103/186 (55%)

Query:   125 KKARGRPPGSTTRKHTAAFGSAGVGFTPHVITVQAGEDVLAKIMSFSQNGPRAVCILSAN 184
             K+ RGRPPGS  ++  A  G+ GVGFTPHVI V+ GED+  KI++F+  GPRA+CILSA 
Sbjct:   196 KRNRGRPPGSGKKQLDALGGTGGVGFTPHVIEVKTGEDIATKILAFTNQGPRAICILSAT 255

Query:   185 GAISNVTLRQAMTSG--GTVTYEGRFXXXXXXXXXXXXXXXXQRSRTGGLSVSXXXXXXX 242
             GA++NV LRQA  S   GTV YEGRF                  ++TG LSVS       
Sbjct:   256 GAVTNVMLRQANNSNPTGTVKYEGRFEIISLSGSFLNSESNGTVTKTGNLSVSLAGHEGR 315

Query:   243 XXXXXXXXXXXXXSPVQVIIGSFLAEGWKESRSGMQ----PEPLSS--SMPKFIPGASAV 296
                          S VQVI+GSF+ +G K+ +S  +    PEP S+  +M  F  G    
Sbjct:   316 IVGGCVDGMLVAGSQVQVIVGSFVPDGRKQKQSAGRAQNTPEPASAPANMLSF-GGVGGP 374

Query:   297 GSPPSR 302
             GSP S+
Sbjct:   375 GSPRSQ 380

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0005829 "cytosol" evidence=IDA

TAIR|locus:2153142 AHL4 "AT-HOOK MOTIF NUCLEAR LOCALIZED PROTEIN 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 312 (114.9 bits), Expect = 5.6e-34, Sum P(2) = 5.6e-34
 Identities = 67/129 (51%), Positives = 78/129 (60%)

Query:   150 FTPHVITVQAGEDVLAKIMSFSQNGPRAVCILSANGAISNVTLRQAMTSGGTVTYEGRFX 209
             FTPHV+TV AGEDV  KIM+FSQ G RA+CILSANG ISNVTLRQ+MTSGGT+TYEG F 
Sbjct:   178 FTPHVLTVNAGEDVTMKIMTFSQQGSRAICILSANGPISNVTLRQSMTSGGTLTYEGHFE 237

Query:   210 XXXXXXXXXXXXXXXQRSRTGGLSVSXXXXXXXXXXXXXXXXXXXXSPVQVIIGSFLAEG 269
                             RSR GG+SVS                     PVQV++GSF+A G
Sbjct:   238 ILSLTGSFIPSESGGTRSRAGGMSVSLAGQDGRVFGGGLAGLFIAAGPVQVMVGSFIA-G 296

Query:   270 WKESRSGMQ 278
              +ES+   Q
Sbjct:   297 QEESQQQQQ 305

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0008283 "cell proliferation" evidence=RCA

GO:0005515 "protein binding" evidence=IPI

GO:0010089 "xylem development" evidence=IMP

TAIR|locus:2122684 AHL3 "AT-HOOK MOTIF NUCLEAR LOCALIZED PROTEIN 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 306 (112.8 bits), Expect = 2.4e-33, Sum P(2) = 2.4e-33
 Identities = 68/151 (45%), Positives = 82/151 (54%)

Query:   130 RPPGSTTRKHTAAFGSAGVGFTPHVITVQAGEDVLAKIMSFSQNGPRAVCILSANGAISN 189
             R P  T           G  FTPHV+ V AGEDV  KIM+FSQ G RA+CILSANG ISN
Sbjct:   146 RSPVDTNLAGVGTADFVGANFTPHVLIVNAGEDVTMKIMTFSQQGSRAICILSANGPISN 205

Query:   190 VTLRQAMTSGGTVTYEGRFXXXXXXXXXXXXXXXXQRSRTGGLSVSXXXXXXXXXXXXXX 249
             VTLRQ+MTSGGT+TYEGRF                 RSR GG+SV               
Sbjct:   206 VTLRQSMTSGGTLTYEGRFEILSLTGSFMQNDSGGTRSRAGGMSVCLAGPDGRVFGGGLA 265

Query:   250 XXXXXXSPVQVIIGSFLAEGWKESRSGMQPE 280
                    PVQV++G+F+A G ++S+  +  E
Sbjct:   266 GLFLAAGPVQVMVGTFIA-GQEQSQLELAKE 295

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0005515 "protein binding" evidence=IPI

GO:0010089 "xylem development" evidence=IMP

TAIR|locus:2178505 AT5G46640 [Arabidopsis thaliana (taxid:3702)]

 Score = 359 (131.4 bits), Expect = 6.7e-33, P = 6.7e-33
 Identities = 89/236 (37%), Positives = 114/236 (48%)

Query:    81 KRKRGRPRKYAPDGSNGSNMXXXXXXXXXXXXXXXXXXXXXXX---------YKKARGRP 131
             K+KRGRPRKY PDGS    +                                 K+ RGRP
Sbjct:   102 KKKRGRPRKYTPDGSIALGLAPTSPLLSAASNSYGEGGVGDSGGNGNSVDPPVKRNRGRP 161

Query:   132 PGSTTRKHTAAFGSAGVGFTPHVITVQAGEDVLAKIMSFSQNGPRAVCILSANGAISNVT 191
             PGS+ ++  A  G++GVGFTPHVI V  GED+ +K+M+FS  G R +CILSA+GA+S V 
Sbjct:   162 PGSSKKQLDALGGTSGVGFTPHVIEVNTGEDIASKVMAFSDQGSRTICILSASGAVSRVM 221

Query:   192 LRQAMTSGGTVTYEGRFXXXXXXXXXXXXXXXXQRSRTGGLSVSXXXXXXXXXXXXXXXX 251
             LRQA  S G VTYEGRF                  +R+G LSV+                
Sbjct:   222 LRQASHSSGIVTYEGRFEIITLSGSVLNYEVNGSTNRSGNLSVALAGPDGGIVGGSVVGN 281

Query:   252 XXXXSPVQVIIGSFLAEGWKESRS------GMQPEPLSSSMPKFIPGASAVGSPPS 301
                 + VQVI+GSF+AE  K  +S      G  PEP S+  P  +    +V   PS
Sbjct:   282 LVAATQVQVIVGSFVAEAKKPKQSSVNIARGQNPEPASA--PANMLNFGSVSQGPS 335

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

TAIR|locus:2050766 AT2G45850 [Arabidopsis thaliana (taxid:3702)]

 Score = 344 (126.2 bits), Expect = 2.6e-31, P = 2.6e-31
 Identities = 78/193 (40%), Positives = 97/193 (50%)

Query:    79 PAKRKRGRPRKYAPDGSNGSNMXXXXXXXXXXXXXXXXXXXXXXXYKKARGRPPGSTTRK 138
             P KRKRGRPRKY  DGS                             K+ RGRPPGS  ++
Sbjct:    96 PMKRKRGRPRKYGQDGS----------VSLALSSSSVSTITPNNSNKRGRGRPPGSGKKQ 145

Query:   139 HTAAFG-----SAGVGFTPHVITVQAGEDVLAKIMSFSQNGPRAVCILSANGAISNVTLR 193
               A+ G     S+G+ FTPHVI V  GED+ +K+++FSQ GPRA+C+LSA+GA+S  TL 
Sbjct:   146 RMASVGELMPSSSGMSFTPHVIAVSIGEDIASKVIAFSQQGPRAICVLSASGAVSTATLI 205

Query:   194 QAMTSGGTVTYEGRFXXXXXXXXXXXXXXXXQRSRTGGLSVSXXXXXXXXXXXXXXXXXX 253
             Q   S G + YEGRF                 R+RTG LSVS                  
Sbjct:   206 QPSASPGAIKYEGRFEILALSTSYIVATDGSFRNRTGNLSVSLASPDGRVIGGAIGGPLI 265

Query:   254 XXSPVQVIIGSFL 266
               SPVQVI+GSF+
Sbjct:   266 AASPVQVIVGSFI 278

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0008150 "biological_process" evidence=ND

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

TAIR|locus:2118091 AHL1 "AT-hook motif nuclear-localized protein 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 337 (123.7 bits), Expect = 1.4e-30, P = 1.4e-30
 Identities = 82/199 (41%), Positives = 100/199 (50%)

Query:    81 KRKRGRPRKYAPDGSN---GSNMXXXXXXXXXXXXXXXXXXXXXXXYKKARGRPPGS--T 135
             K+KRGRPRKY PDG+                                K+++ +P  S   
Sbjct:    89 KKKRGRPRKYGPDGTVVALSPKPISSAPAPSHLPPPSSHVIDFSASEKRSKVKPTNSFNR 148

Query:   136 TRKHTAA--FG-----SAGVGFTPHVITVQAGEDVLAKIMSFSQNGPRAVCILSANGAIS 188
             T+ H      G     S G  FTPH+ITV  GEDV  KI+SFSQ GPR++C+LSANG IS
Sbjct:   149 TKYHHQVENLGEWAPCSVGGNFTPHIITVNTGEDVTMKIISFSQQGPRSICVLSANGVIS 208

Query:   189 NVTLRQAMTSGGTVTYEGRFXXXXXXXXXXXXXXXXQRSRTGGLSVSXXXXXXXXXXXXX 248
             +VTLRQ  +SGGT+TYEGRF                 RSRTGG+SVS             
Sbjct:   209 SVTLRQPDSSGGTLTYEGRFEILSLSGSFMPNDSGGTRSRTGGMSVSLASPDGRVVGGGL 268

Query:   249 XXXXXXXSPVQVIIGSFLA 267
                    SPVQV++GSFLA
Sbjct:   269 AGLLVAASPVQVVVGSFLA 287

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0005739 "mitochondrion" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0016132 "brassinosteroid biosynthetic process" evidence=RCA

TAIR|locus:2126946 AT4G00200 [Arabidopsis thaliana (taxid:3702)]

 Score = 293 (108.2 bits), Expect = 4.2e-30, Sum P(2) = 4.2e-30
 Identities = 58/123 (47%), Positives = 72/123 (58%)

Query:   144 GSAGVGFTPHVITVQAGEDVLAKIMSFSQNGPRAVCILSANGAISNVTLRQAMTSGGTVT 203
             G  G  FTPHVITV  GED+  +I+SFSQ GPRA+CILSANG ISNVTLRQ  + GGT+T
Sbjct:   117 GGVGSNFTPHVITVNTGEDITMRIISFSQQGPRAICILSANGVISNVTLRQPDSCGGTLT 176

Query:   204 YEGRFXXXXXXXXXXXXXXXXQRSRTGGLSVSXXXXXXXXXXXXXXXXXXXXSPVQVIIG 263
             YEGRF                 + R+GG+SVS                    +P+QV++G
Sbjct:   177 YEGRFEILSLSGSFMETENQGSKGRSGGMSVSLAGPDGRVVGGGVAGLLIAATPIQVVVG 236

Query:   264 SFL 266
             SF+
Sbjct:   237 SFI 239

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2132599 AT4G22770 [Arabidopsis thaliana (taxid:3702)]

 Score = 316 (116.3 bits), Expect = 2.4e-28, P = 2.4e-28
 Identities = 79/227 (34%), Positives = 103/227 (45%)

Query:    79 PAKRKRGRPRKYAPDGSN---GSNMXXXXXXXXXXXXXXXXXXXXXXXYKKARGRPPGST 135
             P K++RGRPRKY  DG+      N                         K A   P    
Sbjct:    70 PIKKRRGRPRKYGHDGAAVTLSPNPISSAAPTTSHVIDFSTTSEKRGKMKPATPTPSSFI 129

Query:   136 TRKHTAA-FG-----SAGVGFTPHVITVQAGEDVLAKIMSFSQNGPRAVCILSANGAISN 189
               K+     G     SA   FTPH+ITV AGEDV  +I+SFSQ G  A+C+L ANG +S+
Sbjct:   130 RPKYQVENLGEWSPSSAAANFTPHIITVNAGEDVTKRIISFSQQGSLAICVLCANGVVSS 189

Query:   190 VTLRQAMTSGGTVTYEGRFXXXXXXXXXXXXXXXXQRSRTGGLSVSXXXXXXXXXXXXXX 249
             VTLRQ  +SGGT+TYEGRF                 RSRTGG+SVS              
Sbjct:   190 VTLRQPDSSGGTLTYEGRFEILSLSGTFMPSDSDGTRSRTGGMSVSLASPDGRVVGGGVA 249

Query:   250 XXXXXXSPVQVIIGSFLAEGWKESRSGMQPEPLSSSMPKFIPGASAV 296
                   +P+QV++G+FL  G  +     +P   +      +P +S V
Sbjct:   250 GLLVAATPIQVVVGTFLG-GTNQQEQTPKPHNHNFMSSPLMPTSSNV 295

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

TAIR|locus:2098861 AT3G61310 [Arabidopsis thaliana (taxid:3702)]

 Score = 308 (113.5 bits), Expect = 1.7e-27, P = 1.7e-27
 Identities = 73/191 (38%), Positives = 93/191 (48%)

Query:    81 KRKRGRPRKYAPDGSNGSNMXXXXXXXXXXXXXXXXXXXXXXXYKKARGRPPGSTTRKHT 140
             KRKRGRPRKY  DG + S                          K+ RGRPPGS  ++  
Sbjct:   101 KRKRGRPRKYGQDGGSVS-----------LALSPSISNVSPNSNKRGRGRPPGSGKKQRL 149

Query:   141 AAFG-----SAGVGFTPHVITVQAGEDVLAKIMSFSQNGPRAVCILSANGAISNVTLRQA 195
             ++ G     S G+ FTPHVI V  GED+ +K++SFS  GPRA+C+LSA+GA+S  TL Q 
Sbjct:   150 SSIGEMMPSSTGMSFTPHVIVVSIGEDIASKVISFSHQGPRAICVLSASGAVSTATLLQP 209

Query:   196 MTSGGTVTYEGRFXXXXXXXXXXXXXXXXQRSRTGGLSVSXXXXXXXXXXXXXXXXXXXX 255
               S GT+ YEG F                  +RTG L+VS                    
Sbjct:   210 APSHGTIIYEGLFELISLSTSYLNTTDNDYPNRTGSLAVSLASPDGRVIGGGIGGPLIAA 269

Query:   256 SPVQVIIGSFL 266
             S VQVI+GSF+
Sbjct:   270 SQVQVIVGSFI 280

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	337
pfam03479	120	pfam03479, DUF296, Domain of unknown function (DUF	7e-40
cd11378	113	cd11378, DUF296, Domain of unknown function found	1e-36
COG1661	141	COG1661, COG1661, Predicted DNA-binding protein wi	3e-05

>gnl|CDD|217587 pfam03479, DUF296, Domain of unknown function (DUF296)

 Score =  136 bits (344), Expect = 7e-40
 Identities = 53/123 (43%), Positives = 70/123 (56%), Gaps = 9/123 (7%)

Query: 150 FTPHVITVQAGEDVLAKIMSFSQNGPRAVCILSANGAISNVTLRQAMT---SGGTVTYEG 206
             PHV+ ++ GED++  + +F++       +LS  GA+SNVTLRQ      S G VT EG
Sbjct: 1   GRPHVLRLEPGEDLVESLEAFARQRGIGAAVLSGIGAVSNVTLRQPDEEAKSYGVVTLEG 60

Query: 207 RFEILSLSGSILLSESGGQRSRTGGLSVSLAGPDGRVLGGGVA-GLLTAASPVQVIIGSF 265
           RFEILSLSG+I           +G L VSLA PDG+V+GG +A G + A   V V   SF
Sbjct: 61  RFEILSLSGTISP-----GGKPSGHLHVSLADPDGQVVGGHLAEGTVFATGEVVVTELSF 115

Query: 266 LAE 268
              
Sbjct: 116 ENA 118

This putative domain is found in proteins that contain AT-hook motifs pfam02178, which strongly suggests a DNA-binding function for the proteins as a whole. There are three highly conserved histidine residues, eg at 117, 119 and 133 in Reut_B5223, which should be a structurally conserved metal-binding unit, based on structural comparison with known metal-binding structures. The proteins should work as trimers. Length = 120

>gnl|CDD|211390 cd11378, DUF296, Domain of unknown function found in archaea, bacteria, and plants

 Score =  127 bits (321), Expect = 1e-36
 Identities = 48/118 (40%), Positives = 67/118 (56%), Gaps = 8/118 (6%)

Query: 151 TPHVITVQAGEDVLAKIMSFSQNGPRAVCILSANGAISNVTLRQAMT---SGGTVTYEGR 207
            P V+ ++ GED++  + +F++       +LS  GA+SN TLR          TVT+EGR
Sbjct: 1   RPFVLRLEPGEDLVESLEAFAREEGIKAAVLSGIGAVSNATLRYPDPEPKEYETVTFEGR 60

Query: 208 FEILSLSGSILLSESGGQRSRTGGLSVSLAGPDGRVLGGGVAGLLTAASPVQVIIGSF 265
            EILSLSG+I   +       +G L VSLA  DGRV+GG + G L  A  V+V+IG  
Sbjct: 61  LEILSLSGNISPDDGK----PSGHLHVSLADSDGRVIGGHLLGALV-AGTVEVVIGEL 113

This domain is found in proteins that contain AT-hook motifs, which suggests a role in DNA-binding for the proteins as a whole. Three conserved histidine residues appear to form a zinc-binding site, and the domain has been observed to form homotrimers. It co-occurs with a thioredoxin-like domain in uncharacterized cyanobacterial proteins. Length = 113

>gnl|CDD|224575 COG1661, COG1661, Predicted DNA-binding protein with PD1-like DNA-binding motif [General function prediction only]

 Score = 43.1 bits (102), Expect = 3e-05
 Identities = 24/102 (23%), Positives = 44/102 (43%), Gaps = 17/102 (16%)

Query: 153 HVITVQ--AGEDVLAKIMSFSQNGPRAVCILSANGAISNVTLRQAMTSGG---TVTYEGR 207
            VI ++   GED+ +++ +F++       +++A GA+ +  LR          T+     
Sbjct: 10  RVIALRLDPGEDLFSELEAFAEQEDIHAAVVTAIGALRDAKLRYFDPEEKEYETIPVNEP 69

Query: 208 FEILSLSGSILLSESGGQRSRTGG---LSVSLAGPDGRVLGG 246
            E+LSL G+I         +       L  +L   +G  LGG
Sbjct: 70  LEVLSLLGNI---------ALDDPFVHLHAALGDENGITLGG 102

Length = 141

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	337
PF03479	120	DUF296: Domain of unknown function (DUF296); Inter	99.96
COG1661	141	Predicted DNA-binding protein with PD1-like DNA-bi	99.92
PF02178	13	AT_hook: AT hook motif; InterPro: IPR017956 AT hoo	96.24
smart00384	26	AT_hook DNA binding domain with preference for A/T	96.19
PF14621	219	RFX5_DNA_bdg: RFX5 DNA-binding domain	84.48

>PF03479 DUF296: Domain of unknown function (DUF296); InterPro: IPR005175 This putative conserved domain is found in proteins that contain AT-hook motifs IPR000637 from INTERPRO, suggesting a DNA-binding function for the proteins as a whole, however, the function of this domain is unknown

Probab=99.96  E-value=9.8e-29  Score=207.55  Aligned_cols=117  Identities=32%  Similarity=0.445  Sum_probs=103.3

Q ss_pred             ceeEEEEecCCccHHHHHHHHHHhCCccEEEEEeeceeeeEEEeeccC--CCCeeeeecceEEEEeeeeeeecCCCCCCC
Q 019716          150 FTPHVITVQAGEDVLAKIMSFSQNGPRAVCILSANGAISNVTLRQAMT--SGGTVTYEGRFEILSLSGSILLSESGGQRS  227 (337)
Q Consensus       150 frphVIrV~~GEDVvekI~~Faq~~~raicILSAiGAVSnVTLrq~~~--sg~~~t~eG~fEILSLsGsi~~~e~G~~~s  227 (337)
                      ||+|++||++||||+++|++||+++.+..|+|+++|+|++|+|++++.  .+..++|+|+|||+||+|||.. .++.   
T Consensus         1 ~r~~~~rl~~Gedl~~~l~~~~~~~~i~~~~is~iGsl~~~~l~~~~~~~~~~~~~~~g~~Ei~sl~G~i~~-~~g~---   76 (120)
T PF03479_consen    1 GRVFVIRLDPGEDLLESLEAFAREHGIRSGVISGIGSLSNVTLGYYDPPSYYEPLEFEGPFEIISLSGTISP-EDGK---   76 (120)
T ss_dssp             EEEEEEEEETTSBHHHHHHHHHHHHT-SSEEEEEEEEEEEEEEEEEETTTEEEEEEEESEEEEEEEEEEEEE-ETTE---
T ss_pred             CcEEEEEECCCCHHHHHHHHHHHHCCCcEEEEEEEeEEeEEEEEEecccCCcceEEecccEEEEEeEEEEEC-CCCC---
Confidence            789999999999999999999999888889999999999999999953  4568899999999999999997 4343   


Q ss_pred             CCceeEEEEeCCCCcEEeeecCCccEEecceEEEEEeecccccc
Q 019716          228 RTGGLSVSLAGPDGRVLGGGVAGLLTAASPVQVIIGSFLAEGWK  271 (337)
Q Consensus       228 ~~~hLHVSLAg~dGqViGGHLag~LIAastVEVVV~sF~~~~~k  271 (337)
                      ++.|||++|++.||+|+||||..+.+ ..++||+|..+....++
T Consensus        77 ~~~HlHisl~~~~g~v~gGHl~~g~v-~~t~Ev~i~~~~~~~~~  119 (120)
T PF03479_consen   77 PFVHLHISLADPDGQVFGGHLLEGTV-FATAEVVITELSGINFT  119 (120)
T ss_dssp             EEEEEEEEEE-TTSEEEEEEEEEEEE-EEEEEEEEEEETTEEEE
T ss_pred             CcceEEEEEECCCCeEEeeEeCCCEE-eEEEEEEEEEecCcccc
Confidence            78999999999999999999997665 78999999999877655

Overexpression of a protein containing this domain, Q9S7C9 from SWISSPROT, in Arabidopsis thaliana causes late flowering and modified leaf development []. ; PDB: 2DT4_A 2P6Y_A 3HWU_A 3HTN_A 2NMU_A 2H6L_A 2HX0_A.

>COG1661 Predicted DNA-binding protein with PD1-like DNA-binding motif [General function prediction only]

Probab=99.92  E-value=3e-24  Score=187.41  Aligned_cols=118  Identities=22%  Similarity=0.316  Sum_probs=106.9

Q ss_pred             CceeEEEEecCCccHHHHHHHHHHhCCccEEEEEeeceeeeEEEeeccCC---CCeeeeecceEEEEeeeeeeecCCCCC
Q 019716          149 GFTPHVITVQAGEDVLAKIMSFSQNGPRAVCILSANGAISNVTLRQAMTS---GGTVTYEGRFEILSLSGSILLSESGGQ  225 (337)
Q Consensus       149 ~frphVIrV~~GEDVvekI~~Faq~~~raicILSAiGAVSnVTLrq~~~s---g~~~t~eG~fEILSLsGsi~~~e~G~~  225 (337)
                      .-+.+++||++|||+++.|.+||+++.+..++++|+|++++++|++++.+   |.++++.|+||||||.|||..++    
T Consensus         8 ~gr~~~~Rld~G~d~~~~l~~~a~~~~i~aa~v~~iGal~~~~l~~~~~~~~~y~~~~~~e~~EvlSL~G~i~~~~----   83 (141)
T COG1661           8 SGRVIALRLDPGEDLFSELEAFAEQEDIHAAVVTAIGALRDAKLRYFDPEEKEYETIPVNEPLEVLSLLGNIALDD----   83 (141)
T ss_pred             cceEEEEEeCCCccHHHHHHHHHHhcCceEEEEEEeeeeeeeEEEEecCCCCceEEEecCCcEEEEEecceeecCC----
Confidence            44789999999999999999999999999999999999999999999964   56889999999999999997655    


Q ss_pred             CCCCceeEEEEeCCCCcEEeeecCCccEEecceEEEEEeecccccccc
Q 019716          226 RSRTGGLSVSLAGPDGRVLGGGVAGLLTAASPVQVIIGSFLAEGWKES  273 (337)
Q Consensus       226 ~s~~~hLHVSLAg~dGqViGGHLag~LIAastVEVVV~sF~~~~~k~~  273 (337)
                        ++.|||++|++++|+++||||.++++. .++||+|.++....+.+.
T Consensus        84 --p~~HlHa~l~~~~G~~~GGHL~~~~V~-~t~Ev~I~el~~~~~~R~  128 (141)
T COG1661          84 --PFVHLHAALGDENGITLGGHLLEGEVF-PTAEVFIRELPGELFRRE  128 (141)
T ss_pred             --CcEEEEEEEecCCCcEEeeeecccEEe-EEEEEEEEEccccceeEe
Confidence              699999999999999999999998754 599999999998865543

>PF02178 AT_hook: AT hook motif; InterPro: IPR017956 AT hooks are DNA-binding motifs with a preference for A/T rich regions

Probab=96.24  E-value=0.0016  Score=36.35  Aligned_cols=12  Identities=83%  Similarity=1.193  Sum_probs=4.6

Q ss_pred             cccCCCCCCCCC
Q 019716           81 KRKRGRPRKYAP   92 (337)
Q Consensus        81 kkKRGRPRKy~~   92 (337)
                      +|+||||||+..
T Consensus         1 ~r~RGRP~k~~~   12 (13)
T PF02178_consen    1 KRKRGRPRKNAK   12 (13)
T ss_dssp             S--SS--TT---
T ss_pred             CCcCCCCccccC
Confidence            689999999864

These motifs are found in a variety of proteins, including the high mobility group (HMG) proteins [], in DNA-binding proteins from plants [] and in hBRG1 protein, a central ATPase of the human switching/sucrose non-fermenting (SWI/SNF) remodeling complex []. High mobility group (HMG) proteins are a family of relatively low molecular weight non-histone components in chromatin []. HMG-I and HMG-Y (HMGA) are proteins of about 100 amino acid residues which are produced by the alternative splicing of a single gene. HMG-I/Y proteins bind preferentially to the minor groove of AT-rich regions in double-stranded DNA in a non-sequence specific manner [, ]. It is suggested that these proteins could function in nucleosome phasing and in the 3' end processing of mRNA transcripts. They are also involved in the transcription regulation of genes containing, or in close proximity to, AT-rich regions. ; GO: 0003677 DNA binding; PDB: 2EZE_A 2EZD_A 2EZF_A 2EZG_A.

>smart00384 AT_hook DNA binding domain with preference for A/T rich regions

Probab=96.19  E-value=0.0025  Score=41.70  Aligned_cols=15  Identities=67%  Similarity=0.990  Sum_probs=13.1

Q ss_pred             cccCCCCCCCCCCCC
Q 019716           81 KRKRGRPRKYAPDGS   95 (337)
Q Consensus        81 kkKRGRPRKy~~dg~   95 (337)
                      |||||||||+..+..
T Consensus         1 kRkRGRPrK~~~~~~   15 (26)
T smart00384        1 KRKRGRPRKAPKDXX   15 (26)
T ss_pred             CCCCCCCCCCCCccc
Confidence            699999999998754

Small DNA-binding motif first described in the high mobility group non-histone chromosomal protein HMG-I(Y).

>PF14621 RFX5_DNA_bdg: RFX5 DNA-binding domain

Probab=84.48  E-value=0.35  Score=45.08  Aligned_cols=13  Identities=77%  Similarity=1.109  Sum_probs=11.0

Q ss_pred             cccccCCCCCCCC
Q 019716           79 PAKRKRGRPRKYA   91 (337)
Q Consensus        79 ~~kkKRGRPRKy~   91 (337)
                      ..|||||||||-.
T Consensus        66 dAKRKRGRPRKKs   78 (219)
T PF14621_consen   66 DAKRKRGRPRKKS   78 (219)
T ss_pred             hhhhhcCCCccCC
Confidence            5799999999654

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	337
2p6y_A	142	Hypothetical protein VCA0587; NESG, Q9KM02_vibch,	3e-28
2hx0_A	154	Putative DNA-binding protein; NESG, PSI-2, SCR59,	2e-27
2dt4_A	143	Hypothetical protein PH0802; PPC domain, structura	5e-19
3htn_A	149	Putative DNA binding protein; DUF269 family protei	2e-09
3hwu_A	147	Putative DNA-binding protein; YP_299413.1, structu	1e-08
2h6l_A	146	Hypothetical protein; NESG GR103, structural genom	1e-08

>2p6y_A Hypothetical protein VCA0587; NESG, Q9KM02_vibch, VCR80, structural genomics, PSI-2, prote structure initiative; 1.63A {Vibrio cholerae} Length = 142

 Score =  106 bits (265), Expect = 3e-28
 Identities = 29/115 (25%), Positives = 50/115 (43%), Gaps = 10/115 (8%)

Query: 152 PHVITVQAGEDVLAKIMSF-SQNGPRAVCILSANGAISNVTLRQAMTSGGTVTYEGRFEI 210
              + +  G D+  +I+    Q+   A  I S  G +S + +R A  S  T+     FEI
Sbjct: 4   LIALRLTRGMDLKQQIVQLVQQHRIHAGSIASCVGCLSTLHIRLAD-SVSTLQVSAPFEI 62

Query: 211 LSLSGSILLSESGGQRSRTGGLSVSLAGPDGRVLGGGVAGLLTAASPVQVIIGSF 265
           LSLSG++              L +++A   GRV GG +       +  +++I  +
Sbjct: 63  LSLSGTLTYQHCH--------LHIAVADAQGRVWGGHLLEGNLINTTAELMIHHY 109

>2hx0_A Putative DNA-binding protein; NESG, PSI-2, SCR59, structural genomics, protein structure initiative; 1.55A {Salmonella choleraesuis} SCOP: d.290.1.3 PDB: 2nmu_A Length = 154

 Score =  104 bits (260), Expect = 2e-27
 Identities = 30/122 (24%), Positives = 61/122 (50%), Gaps = 10/122 (8%)

Query: 145 SAGVGFTPHVITVQAGEDVLAKIMSFSQ-NGPRAVCILSANGAISNVTLRQAMTSGGTVT 203
                   + + +  G++V +++ +F Q N  RA  I    G++++V LR A     T +
Sbjct: 13  HNASTARFYALRLLPGQEVFSQLHAFVQQNQLRAAWIAGCTGSLTDVALRYA-GQEATTS 71

Query: 204 YEGRFEILSLSGSILLSESGGQRSRTGGLSVSLAGPDGRVLGGGVAGLLTAASPVQVIIG 263
             G FE++SL+G++ L+           L ++++ P G +LGG +    T  + ++++IG
Sbjct: 72  LTGTFEVISLNGTLELTGEH--------LHLAVSDPYGVMLGGHMMPGCTVRTTLELVIG 123

Query: 264 SF 265
             
Sbjct: 124 EL 125

>2dt4_A Hypothetical protein PH0802; PPC domain, structural genomics, unknown function; 1.60A {Pyrococcus horikoshii} Length = 143

 Score = 81.6 bits (201), Expect = 5e-19
 Identities = 24/124 (19%), Positives = 48/124 (38%), Gaps = 10/124 (8%)

Query: 142 AFGSAGVGFTPHVITVQAGEDVLAKIMSFSQNGPRAVCILSANGAISNVTLRQAMTSGG- 200
              S G     ++  V  GE++L  I +F +       I++  G + N  +   +     
Sbjct: 4   GMFSLG---RTYLFRVPEGEELLTYIKNFCKKEGIETAIINGIGTLKNPKIGYFLEEKKE 60

Query: 201 --TVTYEGRFEILSLSGSILLSESGGQRSRTGGLSVSLAGPDGRVLGGGVAGLLTAASPV 258
              +  +G +E++SL G++ L +            VSL   +G V GG +       + +
Sbjct: 61  YKVIPLKGSYELISLIGNVSLKDGE----PFVHAHVSLGNEEGIVFGGHLVEGEVFVAEI 116

Query: 259 QVII 262
            +  
Sbjct: 117 FLQE 120

>3htn_A Putative DNA binding protein; DUF269 family protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE 1PE; 1.50A {Bacteroides thetaiotaomicron vpi-5482} Length = 149

 Score = 55.0 bits (132), Expect = 2e-09
 Identities = 17/116 (14%), Positives = 46/116 (39%), Gaps = 8/116 (6%)

Query: 153 HVITVQAGEDVLAKIMSFSQNGPRAVCILSANGAISNVTLRQAMTSGG---TVTYEGRFE 209
           +++++    +++  + +F +        ++  GAI  +TLR            T+  + E
Sbjct: 18  YIVSINNHTEIVKALNAFCKEKGILSGSINGIGAIGELTLRFFNPKTKAYDDKTFREQME 77

Query: 210 ILSLSGSILLSESGGQRSRTGGLSVSLAGPDGRVLGGGVAGLLTAASPVQVIIGSF 265
           I +L+G+I              L +++   D   L G +   +   +  + ++  +
Sbjct: 78  ISNLTGNISSMNEQ----VYLHLHITVGRSDYSALAGHLLSAIQNGA-GEFVVEDY 128

>3hwu_A Putative DNA-binding protein; YP_299413.1, structural genomi center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.30A {Ralstonia eutropha} Length = 147

 Score = 52.6 bits (126), Expect = 1e-08
 Identities = 16/117 (13%), Positives = 41/117 (35%), Gaps = 6/117 (5%)

Query: 151 TPHVITVQAGEDVLAKIMSFSQNGPRAVCILSANGAISNVTLRQAMTSGGT--VTYEGRF 208
           T +++ ++ G++VL  +   +++           G +S  T                   
Sbjct: 13  TGYLMVLRHGDNVLQNLEQLARDEHIPSASFVGIGFMSEATFGFYDFGRKQFDPKTYRNV 72

Query: 209 EILSLSGSILLSESGGQRSRTGGLSVSLAGPDGRVLGGGVAGLLTAASPVQVIIGSF 265
           E+ +++GSI   E       +     ++     +  GG + GL       ++ +  +
Sbjct: 73  EMANMTGSIAWKEGK----PSIHAHGTVTDGTFQGAGGHLLGLTVGTGSCEITVTVY 125

>2h6l_A Hypothetical protein; NESG GR103, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.00A {Archaeoglobus fulgidus} SCOP: d.290.1.3 Length = 146

 Score = 52.3 bits (125), Expect = 1e-08
 Identities = 28/112 (25%), Positives = 47/112 (41%), Gaps = 8/112 (7%)

Query: 153 HVITVQAGEDVLAKIMSFSQNGPRAVCILSANGAISNVTLR---QAMTSGGTVTYEGRFE 209
            ++ +  G+D++ +I  F +        +SA GA+ +  +    Q              E
Sbjct: 12  FLLRLDYGKDLVRQIEEFLEEKGIHAAHISAIGAVRSAVIGYYDQEKKEYVKKELMEPLE 71

Query: 210 ILSLSGSILLSESGGQRSRTGGLSVSLAGPDGRVLGGGVAGLLTAASPVQVI 261
           ILSLSG++ + +S         + V L G DG V GG +      A  V V+
Sbjct: 72  ILSLSGNVSMKDSK----PFCHIHVLL-GKDGEVYGGHLFSAEVFACEVFVL 118

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	337
2dt4_A	143	Hypothetical protein PH0802; PPC domain, structura	99.95
2p6y_A	142	Hypothetical protein VCA0587; NESG, Q9KM02_vibch,	99.94
2hx0_A	154	Putative DNA-binding protein; NESG, PSI-2, SCR59,	99.94
3htn_A	149	Putative DNA binding protein; DUF269 family protei	99.94
2h6l_A	146	Hypothetical protein; NESG GR103, structural genom	99.94
3hwu_A	147	Putative DNA-binding protein; YP_299413.1, structu	99.91
2ezd_A	26	High mobility group protein HMG-I/HMG-Y; DNA bindi	95.96

>2dt4_A Hypothetical protein PH0802; PPC domain, structural genomics, unknown function; 1.60A {Pyrococcus horikoshii}

Probab=99.95  E-value=1.9e-27  Score=203.67  Aligned_cols=118  Identities=20%  Similarity=0.342  Sum_probs=105.0

Q ss_pred             eeEEEEecCCccHHHHHHHHHHhCCccEEEEEeeceeeeEEEeeccCCC---CeeeeecceEEEEeeeeeeecCCCCCCC
Q 019716          151 TPHVITVQAGEDVLAKIMSFSQNGPRAVCILSANGAISNVTLRQAMTSG---GTVTYEGRFEILSLSGSILLSESGGQRS  227 (337)
Q Consensus       151 rphVIrV~~GEDVvekI~~Faq~~~raicILSAiGAVSnVTLrq~~~sg---~~~t~eG~fEILSLsGsi~~~e~G~~~s  227 (337)
                      ++|++||++||||+++|++||+++.+..|+++++|+|++|+|++++...   ..++++|+|||+||+|||.+.+ +.   
T Consensus        10 r~~~lrl~~Gedl~~~i~~~~~~~~i~~a~vs~iGsl~~~~l~~~~~~~~~~~~~~~~g~~EIlsl~Gti~~~~-g~---   85 (143)
T 2dt4_A           10 RTYLFRVPEGEELLTYIKNFCKKEGIETAIINGIGTLKNPKIGYFLEEKKEYKVIPLKGSYELISLIGNVSLKD-GE---   85 (143)
T ss_dssp             EEEEEEECTTCBHHHHHHHHHHHHTCCSEEEEEEEEEEEEEEEEEETTTTEEEEEECCSEEEEEEEEEEEEEET-TE---
T ss_pred             CEEEEEECCCCcHHHHHHHHHHHcCCCEEEEEEEEEEEEEEEEeecCccCcceeEeecCCEEEEEeEEEEECCC-CC---
Confidence            6999999999999999999998766666666999999999999998763   4688999999999999999864 43   


Q ss_pred             CCceeEEEEeCCCCcEEeeecCCccEEecceEEEEEeeccccccccC
Q 019716          228 RTGGLSVSLAGPDGRVLGGGVAGLLTAASPVQVIIGSFLAEGWKESR  274 (337)
Q Consensus       228 ~~~hLHVSLAg~dGqViGGHLag~LIAastVEVVV~sF~~~~~k~~~  274 (337)
                      ++.|||++|+|.||+|+||||.+++ +. ++||+|.+|.+..+++..
T Consensus        86 p~~HlHi~l~~~~G~v~GGHl~~g~-v~-t~Ev~i~~~~~~~~~R~~  130 (143)
T 2dt4_A           86 PFVHAHVSLGNEEGIVFGGHLVEGE-VF-VAEIFLQELKGEKIERKP  130 (143)
T ss_dssp             EEEEEEEEEECTTSCEEEEEEEEEE-EE-EEEEEEEEEEESCCEEBC
T ss_pred             ceeeEEEEEECCCCCEeCCCCCCCc-eE-EEEEEEEEcCCCeEEEeC
Confidence            7899999999999999999999887 66 999999999998787765

>2p6y_A Hypothetical protein VCA0587; NESG, Q9KM02_vibch, VCR80, structural genomics, PSI-2, prote structure initiative; 1.63A {Vibrio cholerae}

Probab=99.94  E-value=1.2e-26  Score=199.24  Aligned_cols=116  Identities=24%  Similarity=0.341  Sum_probs=103.7

Q ss_pred             CceeEEEEecCCccHHHHHHHHHHh-CCccEEEEEeeceeeeEEEeeccCCCCeeeeecceEEEEeeeeeeecCCCCCCC
Q 019716          149 GFTPHVITVQAGEDVLAKIMSFSQN-GPRAVCILSANGAISNVTLRQAMTSGGTVTYEGRFEILSLSGSILLSESGGQRS  227 (337)
Q Consensus       149 ~frphVIrV~~GEDVvekI~~Faq~-~~raicILSAiGAVSnVTLrq~~~sg~~~t~eG~fEILSLsGsi~~~e~G~~~s  227 (337)
                      .|++|++||++||||+++|.+||++ +.+++||++++|+|++++|++++... +++|+|+|||+||+|||.+.       
T Consensus         1 ~~r~~~lrL~~Gedl~~~i~~~~~~~~i~~a~v~~~iGsl~~~~l~~~~~~~-~~~~~g~~EIlsl~Gti~~~-------   72 (142)
T 2p6y_A            1 MIHLIALRLTRGMDLKQQIVQLVQQHRIHAGSIASCVGCLSTLHIRLADSVS-TLQVSAPFEILSLSGTLTYQ-------   72 (142)
T ss_dssp             CCEEEEEEECTTCBHHHHHHHHHHHTTCSSEEEEEEEEEEEEEEEECTTSSC-EEEECSCEEEEEEEEEECSS-------
T ss_pred             CCcEEEEEECCCCcHHHHHHHHHHHhCCCEEEEEEeEEEEEeEEEECCCCCc-cEecCCcEEEEEeEEEEeCC-------
Confidence            3799999999999999999999976 55588999999999999999999864 78899999999999999863       


Q ss_pred             CCceeEEEEeCCCCcEEeeecCCccEEecceEEEEEeecccccccc
Q 019716          228 RTGGLSVSLAGPDGRVLGGGVAGLLTAASPVQVIIGSFLAEGWKES  273 (337)
Q Consensus       228 ~~~hLHVSLAg~dGqViGGHLag~LIAastVEVVV~sF~~~~~k~~  273 (337)
                       ..|||++|+|.||+++||||.+++++..++||+|.+|....+++.
T Consensus        73 -~~HlHisl~~~~G~v~GGHl~~g~~V~~t~Ev~i~~~~~~~~~R~  117 (142)
T 2p6y_A           73 -HCHLHIAVADAQGRVWGGHLLEGNLINTTAELMIHHYPQHHFTRE  117 (142)
T ss_dssp             -CEEEEEEEECTTSCEEEEEECTTCEECC-EEEEEEECTTEEEEEE
T ss_pred             -CCEEEEEEECCCCCEEccccCCCCeEEEEEEEEEEEccCCeEEEe
Confidence             379999999999999999999877888999999999988777654

>2hx0_A Putative DNA-binding protein; NESG, PSI-2, SCR59, structural genomics, protein structure initiative; 1.55A {Salmonella choleraesuis} SCOP: d.290.1.3 PDB: 2nmu_A

Probab=99.94  E-value=1.3e-26  Score=201.52  Aligned_cols=121  Identities=26%  Similarity=0.434  Sum_probs=108.1

Q ss_pred             cCCCCceeEEEEecCCccHHHHHHHHHH-hCCccEEEEEeeceeeeEEEeeccCCCCeeeeecceEEEEeeeeeeecCCC
Q 019716          145 SAGVGFTPHVITVQAGEDVLAKIMSFSQ-NGPRAVCILSANGAISNVTLRQAMTSGGTVTYEGRFEILSLSGSILLSESG  223 (337)
Q Consensus       145 ~~g~~frphVIrV~~GEDVvekI~~Faq-~~~raicILSAiGAVSnVTLrq~~~sg~~~t~eG~fEILSLsGsi~~~e~G  223 (337)
                      +....+++|++||++||||+++|.+||+ ++.+++||++++|+|++|+||+++... +++|+|+|||+||+|+|.+.   
T Consensus        13 ~~~~~~r~~vlrL~~Gedl~~~i~~~~~~~gi~~a~v~s~iGsl~~~~l~~~~~~~-~~~~~g~~EIlsl~Gti~~~---   88 (154)
T 2hx0_A           13 HNASTARFYALRLLPGQEVFSQLHAFVQQNQLRAAWIAGCTGSLTDVALRYAGQEA-TTSLTGTFEVISLNGTLELT---   88 (154)
T ss_dssp             CSCCCCEEEEEEECTTCBHHHHHHHHHHHHTCSSEEEEEEEEEEEEEEEECTTCSS-CEEEEEEEEEEEEEEEEETT---
T ss_pred             CCCCCccEEEEEECCCCcHHHHHHHHHHHhCCCEEEEEEeEeeeEEeEEEccCCCc-cEecCCcEEEEEeeeeEeCC---
Confidence            3457889999999999999999999995 566689999999999999999999865 78899999999999999863   


Q ss_pred             CCCCCCceeEEEEeCCCCcEEeeecCCccEEecceEEEEEeeccccccccC
Q 019716          224 GQRSRTGGLSVSLAGPDGRVLGGGVAGLLTAASPVQVIIGSFLAEGWKESR  274 (337)
Q Consensus       224 ~~~s~~~hLHVSLAg~dGqViGGHLag~LIAastVEVVV~sF~~~~~k~~~  274 (337)
                           ..||||+|+|.||+|+||||++++++..++||+|..|....+++..
T Consensus        89 -----~~HlHisl~~~~G~v~GGHL~~g~~V~~t~Ev~i~~~~~~~~~R~~  134 (154)
T 2hx0_A           89 -----GEHLHLAVSDPYGVMLGGHMMPGCTVRTTLELVIGELPALTFSRQP  134 (154)
T ss_dssp             -----EEEEEEEEECTTSCEEEEEECTTCEEEEEEEEEEEECTTEEEEEEE
T ss_pred             -----CCEEEEEEECCCCCEEccccCCCCcEEEEEEEEEEEccCceEEEec
Confidence                 3799999999999999999998778889999999999887676543

>3htn_A Putative DNA binding protein; DUF269 family protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE 1PE; 1.50A {Bacteroides thetaiotaomicron vpi-5482} SCOP: d.290.1.0

Probab=99.94  E-value=6.7e-27  Score=202.39  Aligned_cols=116  Identities=15%  Similarity=0.211  Sum_probs=103.7

Q ss_pred             eeEEEEecCCccHHHHHHHHHHhCCccEEEEEeeceeeeEEEeeccCC---CCeeeeecceEEEEeeeeeeecCCCCCCC
Q 019716          151 TPHVITVQAGEDVLAKIMSFSQNGPRAVCILSANGAISNVTLRQAMTS---GGTVTYEGRFEILSLSGSILLSESGGQRS  227 (337)
Q Consensus       151 rphVIrV~~GEDVvekI~~Faq~~~raicILSAiGAVSnVTLrq~~~s---g~~~t~eG~fEILSLsGsi~~~e~G~~~s  227 (337)
                      +.|++||++||||+++|.+||+++.+..|+++++|+|++|+|++++.+   +..++|+|+|||+||+|||.+.| +.   
T Consensus        16 r~~~lrl~~Gedl~~~l~~~~~~~~i~~a~vs~iGsl~~~~l~~~~~~~~~y~~~~~~g~~EI~sl~Gti~~~d-G~---   91 (149)
T 3htn_A           16 NKYIVSINNHTEIVKALNAFCKEKGILSGSINGIGAIGELTLRFFNPKTKAYDDKTFREQMEISNLTGNISSMN-EQ---   91 (149)
T ss_dssp             TEEEEEECTTCBHHHHHHHHHHHHTCCSEEEEEEEEEEEEEEEEECTTTCCEEEEEECSCEEEEEEEEEEEEET-TE---
T ss_pred             CEEEEEECCCChHHHHHHHHHHHcCCcEEEEEEEEEeeeEEEEccCCCcccceeEEecCceEEEEeEEEEEccC-CC---
Confidence            689999999999999999999887777777799999999999999875   34789999999999999999864 43   


Q ss_pred             CCceeEEEEeCCCCcEEeeecCCccEEecceEEEEEeeccccccc
Q 019716          228 RTGGLSVSLAGPDGRVLGGGVAGLLTAASPVQVIIGSFLAEGWKE  272 (337)
Q Consensus       228 ~~~hLHVSLAg~dGqViGGHLag~LIAastVEVVV~sF~~~~~k~  272 (337)
                      ++.|||++|+|.||+|+||||..+ ++..++||+|..+.. .+.+
T Consensus        92 p~~HlH~sl~~~~G~v~gGHl~~g-~V~~t~Ei~i~~~~~-~~~R  134 (149)
T 3htn_A           92 VYLHLHITVGRSDYSALAGHLLSA-IQNGAGEFVVEDYSE-RISR  134 (149)
T ss_dssp             EEEEEEEEEECTTSBEEEEEEEEE-EEEEEEEEEEEECCS-CCEE
T ss_pred             ceEEEEEEEECCCCCEEeEEeCCC-EEEEEEEEEEEEcCC-eeEE
Confidence            789999999999999999999987 778999999999977 4544

>2h6l_A Hypothetical protein; NESG GR103, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.00A {Archaeoglobus fulgidus} SCOP: d.290.1.3

Probab=99.94  E-value=1.2e-26  Score=199.38  Aligned_cols=117  Identities=21%  Similarity=0.248  Sum_probs=102.9

Q ss_pred             eeEEEEecCCccHHHHHHHHHHhCCccEEEEEeeceeeeEEEeeccCCC---CeeeeecceEEEEeeeeeeecCCCCCCC
Q 019716          151 TPHVITVQAGEDVLAKIMSFSQNGPRAVCILSANGAISNVTLRQAMTSG---GTVTYEGRFEILSLSGSILLSESGGQRS  227 (337)
Q Consensus       151 rphVIrV~~GEDVvekI~~Faq~~~raicILSAiGAVSnVTLrq~~~sg---~~~t~eG~fEILSLsGsi~~~e~G~~~s  227 (337)
                      ++|++||++||||+++|++||++..+..|+++++|+|++++|++++...   ..++++|+|||+||+|||.+.+ +.   
T Consensus        10 r~~~lrl~~Gedl~~~i~~~~~~~~i~~a~vs~iGsl~~~~l~~~~~~~~~y~~~~~~g~~EIlsl~Gti~~~d-g~---   85 (146)
T 2h6l_A           10 KGFLLRLDYGKDLVRQIEEFLEEKGIHAAHISAIGAVRSAVIGYYDQEKKEYVKKELMEPLEILSLSGNVSMKD-SK---   85 (146)
T ss_dssp             EEEEEECCTTSBHHHHHHHHHHHHTCCSEEEEEEEEEEEEEEEEEETTTTEEEEEEECSCEEEEEEEEEEEEET-TE---
T ss_pred             CEEEEEECCCCCHHHHHHHHHHHcCCCEEEEEEEEEEEEEEEECCCCCCcceeEEEecCcEEEEEeEEEEECCC-CC---
Confidence            6999999999999999999997765554555999999999999998764   4789999999999999999864 43   


Q ss_pred             CCceeEEEEeCCCCcEEeeecCCccEEecceEEEEEeeccccccccC
Q 019716          228 RTGGLSVSLAGPDGRVLGGGVAGLLTAASPVQVIIGSFLAEGWKESR  274 (337)
Q Consensus       228 ~~~hLHVSLAg~dGqViGGHLag~LIAastVEVVV~sF~~~~~k~~~  274 (337)
                      ++.|||++|+ .||+|+||||.+++ + .++||+|.+|.+..+++..
T Consensus        86 p~~HlHi~l~-~~G~v~gGHl~~g~-V-~t~Evvi~~~~~~~~~R~~  129 (146)
T 2h6l_A           86 PFCHIHVLLG-KDGEVYGGHLFSAE-V-FACEVFVLPLSGEAPERAF  129 (146)
T ss_dssp             EEEEEEEEEE-EBTEEEEEEEEEEE-E-EEEEEEEEECBSCCCBEEE
T ss_pred             ceeeEEEEEC-CCCcEEeeecCCCE-E-EEEEEEEEEcCCCcEEEeE
Confidence            7899999999 99999999999988 4 6999999999987777653

>3hwu_A Putative DNA-binding protein; YP_299413.1, structural genomi center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.30A {Ralstonia eutropha}

Probab=99.91  E-value=5e-24  Score=183.83  Aligned_cols=115  Identities=17%  Similarity=0.251  Sum_probs=100.5

Q ss_pred             eeEEEEecCCccHHHHHHHHHHhCCccEEEEEeeceeeeEEEeeccCCC---CeeeeecceEEEEeeeeeeecCCCCCCC
Q 019716          151 TPHVITVQAGEDVLAKIMSFSQNGPRAVCILSANGAISNVTLRQAMTSG---GTVTYEGRFEILSLSGSILLSESGGQRS  227 (337)
Q Consensus       151 rphVIrV~~GEDVvekI~~Faq~~~raicILSAiGAVSnVTLrq~~~sg---~~~t~eG~fEILSLsGsi~~~e~G~~~s  227 (337)
                      +.+++||++||||+++|.+||+++.+..++++++|++++++|++++.+.   ...+++ ++||+||+|||.+.| |.   
T Consensus        13 ~~~~~rL~~Gedl~~~l~~~~~~~~i~~a~v~~iGsl~~~~l~~~~~~~~~y~~~~~~-~~Ei~sl~Gtis~~d-G~---   87 (147)
T 3hwu_A           13 TGYLMVLRHGDNVLQNLEQLARDEHIPSASFVGIGFMSEATFGFYDFGRKQFDPKTYR-NVEMANMTGSIAWKE-GK---   87 (147)
T ss_dssp             TEEEEEEETTCBHHHHHHHHHHHTTCSEEEEEEEEEEEEEEEEEEETTTTEEEEEEEE-EEEEEEEEEEEEEET-TE---
T ss_pred             CEEEEEECCCChHHHHHHHHHHHcCCCEEEEEEEecccEEEEEeecCCcCccccEEec-CcEEEEEEEEEEcCC-CC---
Confidence            5799999999999999999999998888888999999999999998753   356788 899999999999855 43   


Q ss_pred             CCceeEEEEeCCCCcEEeeecCCccEEe-cceEEEEEeeccccccc
Q 019716          228 RTGGLSVSLAGPDGRVLGGGVAGLLTAA-SPVQVIIGSFLAEGWKE  272 (337)
Q Consensus       228 ~~~hLHVSLAg~dGqViGGHLag~LIAa-stVEVVV~sF~~~~~k~  272 (337)
                      ++.|||++|+|.||+++||||..+ ++. .|+||+|..+.. .+.+
T Consensus        88 p~~HlH~~~~d~~g~v~GGHL~~g-~V~~~t~Ei~i~~~~~-~~~R  131 (147)
T 3hwu_A           88 PSIHAHGTVTDGTFQGAGGHLLGL-TVGTGSCEITVTVYPQ-RLDR  131 (147)
T ss_dssp             EEEEEEEEEECTTCCEEEEEEEEE-EEEEEEEEEEEEEESS-CCBE
T ss_pred             ceEEEEEEEECCCCcEEeeEecCc-EEEeEeEEEEEEEcCC-eEEE
Confidence            799999999999999999999988 555 599999998754 4443

>2ezd_A High mobility group protein HMG-I/HMG-Y; DNA binding protein, minor groove DNA binding, transcriptional CO-activator, architectural factor; HET: DNA; NMR {Homo sapiens} SCOP: j.10.1.1 PDB: 2eze_A*

Probab=95.96  E-value=0.0028  Score=40.23  Aligned_cols=15  Identities=47%  Similarity=0.824  Sum_probs=13.7

Q ss_pred             cccCCCCCCCCCCCc
Q 019716          124 YKKARGRPPGSTTRK  138 (337)
Q Consensus       124 ~kk~RGRP~GS~nK~  138 (337)
                      .||+||||.|||||.
T Consensus         4 pKrpRgRpkGSKNk~   18 (26)
T 2ezd_A            4 PKRPRGRPKGSKNKG   18 (26)
T ss_dssp             CCCCSSCCTTCCCCS
T ss_pred             CcCCCCCcCcccccC
Confidence            589999999999986

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	337
d2hx0a1	136	d.290.1.3 (A:6-141) Hypothetical protein STM3071 {	3e-26
d2h6la1	138	d.290.1.3 (A:1-138) Hypothetical protein AF0104 {A	1e-16

>d2hx0a1 d.290.1.3 (A:6-141) Hypothetical protein STM3071 {Salmonella typhimurium [TaxId: 90371]} Length = 136

class: Alpha and beta proteins (a+b)
fold: AF0104/ALDC/Ptd012-like
superfamily: AF0104/ALDC/Ptd012-like
family: AF0104-like
domain: Hypothetical protein STM3071
species: Salmonella typhimurium [TaxId: 90371]

 Score = 99.2 bits (247), Expect = 3e-26
 Identities = 31/117 (26%), Positives = 62/117 (52%), Gaps = 10/117 (8%)

Query: 153 HVITVQAGEDVLAKIMSFS-QNGPRAVCILSANGAISNVTLRQAMTSGGTVTYEGRFEIL 211
           + + +  G++V +++ +F  QN  RA  I    G++++V LR A     T +  G FE++
Sbjct: 9   YALRLLPGQEVFSQLHAFVQQNQLRAAWIAGCTGSLTDVALRYA-GQEATTSLTGTFEVI 67

Query: 212 SLSGSILLSESGGQRSRTGGLSVSLAGPDGRVLGGGVAGLLTAASPVQVIIGSFLAE 268
           SL+G++ L+           L ++++ P G +LGG +    T  + ++++IG   A 
Sbjct: 68  SLNGTLELTGEH--------LHLAVSDPYGVMLGGHMMPGCTVRTTLELVIGELPAL 116

>d2h6la1 d.290.1.3 (A:1-138) Hypothetical protein AF0104 {Archaeoglobus fulgidus [TaxId: 2234]} Length = 138

class: Alpha and beta proteins (a+b)
fold: AF0104/ALDC/Ptd012-like
superfamily: AF0104/ALDC/Ptd012-like
family: AF0104-like
domain: Hypothetical protein AF0104
species: Archaeoglobus fulgidus [TaxId: 2234]

 Score = 73.4 bits (180), Expect = 1e-16
 Identities = 27/112 (24%), Positives = 46/112 (41%), Gaps = 8/112 (7%)

Query: 153 HVITVQAGEDVLAKIMSFSQNGPRAVCILSANGAISNVTLRQAMTSGG---TVTYEGRFE 209
            ++ +  G+D++ +I  F +        +SA GA+ +  +                   E
Sbjct: 12  FLLRLDYGKDLVRQIEEFLEEKGIHAAHISAIGAVRSAVIGYYDQEKKEYVKKELMEPLE 71

Query: 210 ILSLSGSILLSESGGQRSRTGGLSVSLAGPDGRVLGGGVAGLLTAASPVQVI 261
           ILSLSG++ + +S         + V L G DG V GG +      A  V V+
Sbjct: 72  ILSLSGNVSMKDSK----PFCHIHVLL-GKDGEVYGGHLFSAEVFACEVFVL 118

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	337
d2hx0a1	136	Hypothetical protein STM3071 {Salmonella typhimuri	99.94
d2h6la1	138	Hypothetical protein AF0104 {Archaeoglobus fulgidu	99.91

>d2hx0a1 d.290.1.3 (A:6-141) Hypothetical protein STM3071 {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a+b)
fold: AF0104/ALDC/Ptd012-like
superfamily: AF0104/ALDC/Ptd012-like
family: AF0104-like
domain: Hypothetical protein STM3071
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.94  E-value=5.5e-27  Score=198.15  Aligned_cols=119  Identities=26%  Similarity=0.443  Sum_probs=107.1

Q ss_pred             CCCceeEEEEecCCccHHHHHHHHHH-hCCccEEEEEeeceeeeEEEeeccCCCCeeeeecceEEEEeeeeeeecCCCCC
Q 019716          147 GVGFTPHVITVQAGEDVLAKIMSFSQ-NGPRAVCILSANGAISNVTLRQAMTSGGTVTYEGRFEILSLSGSILLSESGGQ  225 (337)
Q Consensus       147 g~~frphVIrV~~GEDVvekI~~Faq-~~~raicILSAiGAVSnVTLrq~~~sg~~~t~eG~fEILSLsGsi~~~e~G~~  225 (337)
                      ++..|.|++||++||||+++|.+||+ ++.+++||++++|++++|+|++++.. ....++|+|||+||+|||...+    
T Consensus         3 ~~~~R~~~lrl~~Gedl~~~i~~~~~~~~I~~a~V~~~iGs~~~~~~~~~~~~-~~~~~~g~~Ei~sl~G~I~~~~----   77 (136)
T d2hx0a1           3 ASTARFYALRLLPGQEVFSQLHAFVQQNQLRAAWIAGCTGSLTDVALRYAGQE-ATTSLTGTFEVISLNGTLELTG----   77 (136)
T ss_dssp             CCCCEEEEEEECTTCBHHHHHHHHHHHHTCSSEEEEEEEEEEEEEEEECTTCS-SCEEEEEEEEEEEEEEEEETTE----
T ss_pred             CCCCcEEEEEECCCChHHHHHHHHHHHhCCCEEEEEEEeeeeEEEEEEeCCCC-CcEEecCcEEEEEEEEEeccCC----
Confidence            46779999999999999999999995 56678999999999999999999875 4678999999999999997533    


Q ss_pred             CCCCceeEEEEeCCCCcEEeeecCCccEEecceEEEEEeeccccccccC
Q 019716          226 RSRTGGLSVSLAGPDGRVLGGGVAGLLTAASPVQVIIGSFLAEGWKESR  274 (337)
Q Consensus       226 ~s~~~hLHVSLAg~dGqViGGHLag~LIAastVEVVV~sF~~~~~k~~~  274 (337)
                          .|||++|+|.||+++||||+++++++.++||+|.+|.+..+++..
T Consensus        78 ----~HlH~~~a~~~g~v~gGhL~~g~~v~~t~Eivi~~l~~~~~~R~~  122 (136)
T d2hx0a1          78 ----EHLHLAVSDPYGVMLGGHMMPGCTVRTTLELVIGELPALTFSRQP  122 (136)
T ss_dssp             ----EEEEEEEECTTSCEEEEEECTTCEEEEEEEEEEEECTTEEEEEEE
T ss_pred             ----CeEEEEEECCCCcEEeEEecCCcEEEEEEEEEEEEccCCceEEcc
Confidence                599999999999999999999999999999999999988777643

>d2h6la1 d.290.1.3 (A:1-138) Hypothetical protein AF0104 {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a+b)
fold: AF0104/ALDC/Ptd012-like
superfamily: AF0104/ALDC/Ptd012-like
family: AF0104-like
domain: Hypothetical protein AF0104
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.91  E-value=4.9e-25  Score=185.24  Aligned_cols=116  Identities=22%  Similarity=0.265  Sum_probs=103.0

Q ss_pred             eeEEEEecCCccHHHHHHHHHHhCCccEEEEEeeceeeeEEEeeccCCC---CeeeeecceEEEEeeeeeeecCCCCCCC
Q 019716          151 TPHVITVQAGEDVLAKIMSFSQNGPRAVCILSANGAISNVTLRQAMTSG---GTVTYEGRFEILSLSGSILLSESGGQRS  227 (337)
Q Consensus       151 rphVIrV~~GEDVvekI~~Faq~~~raicILSAiGAVSnVTLrq~~~sg---~~~t~eG~fEILSLsGsi~~~e~G~~~s  227 (337)
                      |.|++||++||||+++|.+||++..+..|+++++|++++++|++++...   ..+.++|+|||+||+|||...+++    
T Consensus        10 r~~~~rl~~Gedl~~~l~~~~~~~~i~~a~is~iG~~~~~~l~~~~~~~~~~~~~~~~g~~Ei~sl~G~i~~~~g~----   85 (138)
T d2h6la1          10 KGFLLRLDYGKDLVRQIEEFLEEKGIHAAHISAIGAVRSAVIGYYDQEKKEYVKKELMEPLEILSLSGNVSMKDSK----   85 (138)
T ss_dssp             EEEEEECCTTSBHHHHHHHHHHHHTCCSEEEEEEEEEEEEEEEEEETTTTEEEEEEECSCEEEEEEEEEEEEETTE----
T ss_pred             CEEEEEECCCChHHHHHHHHHHHcCCcEEEEEEEeecccceEEEecCCCCccceEecCCCEEEEEeEEEEEcCCCC----
Confidence            7899999999999999999998888888999999999999999988763   467899999999999999876643    


Q ss_pred             CCceeEEEEeCCCCcEEeeecCCccEEecceEEEEEeecccccccc
Q 019716          228 RTGGLSVSLAGPDGRVLGGGVAGLLTAASPVQVIIGSFLAEGWKES  273 (337)
Q Consensus       228 ~~~hLHVSLAg~dGqViGGHLag~LIAastVEVVV~sF~~~~~k~~  273 (337)
                      ++.|+|++|++ ||+++||||..+.+.  ++|++|.++....+++.
T Consensus        86 p~~HlH~~~~~-~g~~~gGHl~~~~v~--~~e~~i~~~~~~~~~R~  128 (138)
T d2h6la1          86 PFCHIHVLLGK-DGEVYGGHLFSAEVF--ACEVFVLPLSGEAPERA  128 (138)
T ss_dssp             EEEEEEEEEEE-BTEEEEEEEEEEEEE--EEEEEEEECBSCCCBEE
T ss_pred             cEEEEEEEECC-CCCEEEEEeCccEEE--EEEEEEEEecCCceEEe
Confidence            78999999997 799999999987543  58999999988877765