Citrus Sinensis ID: 019724

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330------
Protein Sequence
MGSRALDITVVSASDLKTAGMFSKMNVYAVVTIFGESQTTSVARDCGVRPTWNHQMRFNIDEAAAMQNNLTIVYSIRSTGGCFGNSDLGEVFVPVKEMLLRSNGDDDKPMSYNITTPGGRAKGVLNVSYKFGPSSSANNNNNNNNNNNANQSNDNPGMAYAPQPPPPMPQGYANPTAYPAPQKDVYPPPPDAHKAALAYPAPGYPPQPQAYPLPGGYPPPGYAAGAPAPPHPGGYAPVQGPGGMNYQPSPPGSAMGPAGYAYAAPPAAPQQHSKNSNNSIKKKGMAAGLGLGMGAGLLGGLAGGLTLAAAGGGGDGVNFGDYGGEEIEGSVDGEYR
Secondary Structure (PSIPRED)
cccEEEEEEEEEEccccccccccccccEEEEEEEcccEEEccccccccccccccEEEEEEcHHHHcccccEEEEEEEEccccccccccEEEEEEcHHHcccccccccccEEEEEEcccccccEEEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHccccccccHHHHccccccccccccccccEEEcccccccc
Secondary Structure Prediction (SSPRO)
ccccEEEEEEEEccccccccccccccEEEEEEEcccccccccccccccccccccEEEEEEcHHHcccccEEEEEEEEEcccccccccEEEEEEEHHHHHcccccccccEEEEEEEccccccEEEEEEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHcccHHHHHHHHHHHHHHHHHHHHHHEEcccccccccccccccccEEEEccccccc
Coil and Loop (DISEMBL)
MGSRALDITVVSASdlktagmfskMNVYAVVTIFGesqttsvardcgvrptwnhqmRFNIDEAAAMQNNLTIVYSIRstggcfgnsdlgevfvPVKEMLLrsngdddkpmsynittpggrakgvlnvsykfgpsssannnnnnnnnnnanqsndnpgmayapqppppmpqgyanptaypapqkdvyppppdahkaalaypapgyppqpqayplpggypppgyaagapapphpggyapvqgpggmnyqpsppgsamgpagyayaappaapqqhsknsnnsiKKKGMAAGLGLGMGAGLLGGLAGGLtlaaaggggdgvnfgdyggeeiegsvdgeyr
Flexible Loop (DISEMBL)
mgsraldiTVVSasdlktagmfSKMNVYAVVTIFGESQTTSVARDCGVRPTWNHQMRFNIDEAAAMQNNLTIVYSIRSTGGCFGNSDLGEVFVPVKEMLLrsngdddkpmsynittpggrakgVLNVSYKFGPSSSANNNNNNNNNNNANQSNDNPGMAYAPQPPPPMPQGYANPTAYPAPQKDVYPPPPDAHKAALAYPAPGYPPQPQAYPLPGGYPPPGYAAGAPAPPHPGGYAPVQGPGGMNYQPSPPGSAMGPAGYAYAAPPAAPQQHSKNSNNSIKKKGMAAGLGLGMGAGLLGGLAGGLTLAAAGGGGDGVNFGDYGGEeiegsvdgeyr
Low Complexity Region (SEG)
MGSRALDITVVSASDLKTAGMFSKMNVYAVVTIFGESQTTSVARDCGVRPTWNHQMRFNIDEAAAMQNNLTIVYSIRSTGGCFGNSDLGEVFVPVKEMLLRSNGDDDKPMSYNITTPGGRAKGVLNVSYKFGPsssannnnnnnnnnnanqsndnpgmayapqppppmpqgyanpTAYPAPQKDVYPPPPDAHKaalaypapgyppqpqayplpggypppgyaagapapphpggyapVQGPGGMNYQpsppgsamgpagyayaappaapQQHsknsnnsikkkgmaaglglgmgagllgglaggltlaaaggggDGVNFGDYGGEEIEGSVDGEYR
Disordered region (IsUnstruct)
******DITVVSASDLKTAGMFSKMNVYAVVTIFGESQTTSVARDCGVRPTWNHQMRFNIDEAAAMQNNLTIVYSIRSTGGCFGNSDLGEVFVPVKEMLL******************************************************************************************************************************************************************************************AGLGLGMGAGLLGGLAGGLTLAAAGGGGDGVNFGDYG*************
Disordered Region (DISOPRED)
*GSRALDITVVSASDLKTAGMFSKMNVYAVVTIFGESQTTSVARDCGVRPTWNHQMRFNIDEAAAMQNNLTIVYSIRSTGGCFGNSDLGEVFVPVKEMLLRSNGDDDKPMSYNITTPGGRAKGVLNVSYKFGPSSS************************************************************************************************************************************************************MGAGLLGGLAGGLTLAAAGGGGDGVNFGDYGGEEIEG*******
Disordered Region (DISEMBL)
MGSRALDITVVSASDLKTAGMFSKMNVYAVVTIFGESQTTSVARDCGVRPTWNHQMRFNIDEAAAMQNNLTIVYSIRSTGGCFGNSDLGEVFVPVKEMLLRSNGDDDKPMSYNITTPGGRAKGVLNVSYKFGPSSSANNNNNNNNNNNANQSNDNPGMAYAPQPPPPMPQGYANPTAYPAPQKDVYPPPPDAHKAALAYPAPGYPPQPQAYPLPGGYPPPGYAAGAPAPPHPGGYAPVQGPGGMNYQPSPPGSAMGPAGYAYAA*************NSIKKKGMAAGLGLGMGAGLLGGLAGGLTLAAAGGGGDGVNFGDYGGEEIEGSVDGEYR
Disordered Region (DISPRO)
*GSRALDITVVSASDLKTAGMFSKMNVYAVVTIFGESQTTSVARDCGVRPTWNHQMRFNIDEAAAMQNNLTIVYSIRSTGGCFGNSDLGEVFVPVKEMLLRSNGDDDKPMSYNITTPGGRAKGVLNVSYKFGPSS*******************NPGMAYAPQPPPPMPQGYANPTAYPAPQKDVYPPPPDAHKAALAYPAPGYPPQPQAYPLPGGYPPPGYAAGAPAPPHPGGYAPVQGPGGMNYQPSPPGSAMGPAGYAYAAPPAAP********NS*KKKGMAAGLGLGMGAGLLGGLAGGLTLAAAGGGGDGVNFGDYGGEEIEGSVDG***
Transmembrane Helix (TMHMM)
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Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGSRALDITVVSASDLKTAGMFSKMNVYAVVTIFGESQTTSVARDCGVRPTWNHQMRFNIDEAAAMQNNLTIVYSIRSTGGCFGNSDLGEVFVPVKEMLLRSNGDDDKPMSYNITTPGGRAKGVLNVSYKFGPSSSANNNNNNNNNNNANQSNDNPGMAYAPQPPPPMPQGYANPTAYPAPQKDVYPPPPDAHKAALAYPAPGYPPQPQAYPLPGGYPPPGYAAGAPAPPHPGGYAPVQGPGGMNYQPSPPGSAMGPAGYAYAAPPAAPQQHSKNSNNSIKKKGMAAGLGLGMGAGLLGGLAGGLTLAAAGGGGDGVNFGDYGGEEIEGSVDGEYR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	336
18390977	324	uncharacterized protein [Arabidopsis tha	0.794	0.824	0.376	2e-34
3426060	324	src2-like protein [Arabidopsis thaliana]	0.794	0.824	0.376	3e-34
297843702	320	hypothetical protein ARALYDRAFT_470988 [	0.75	0.787	0.368	7e-31
255542702	279	conserved hypothetical protein [Ricinus	0.398	0.480	0.475	9e-30
225450819	276	PREDICTED: uncharacterized protein LOC10	0.592	0.721	0.392	2e-28
225432286	291	PREDICTED: uncharacterized protein LOC10	0.494	0.570	0.419	4e-27
224123558	303	predicted protein [Populus trichocarpa]	0.383	0.425	0.434	8e-25
224125214	289	predicted protein [Populus trichocarpa]	0.494	0.574	0.401	1e-24
356521871	290	PREDICTED: uncharacterized protein LOC10	0.479	0.555	0.380	7e-24
93115319	276	SRC2-like protein [Capsicum annuum]	0.604	0.735	0.366	6e-23

>gi|18390977|ref|NP_563835.1| uncharacterized protein [Arabidopsis thaliana] gi|1922937|gb|AAB70401.1| Similar to Glycine SRC2 (gb|AB000130). ESTs gb|H76869,gb|T21700,gb|ATTS5089 come from this gene [Arabidopsis thaliana] gi|15010558|gb|AAK73938.1| At1g09070/F7G19_6 [Arabidopsis thaliana] gi|22655398|gb|AAM98291.1| At1g09070/F7G19_6 [Arabidopsis thaliana] gi|332190270|gb|AEE28391.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  152 bits (384), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 111/295 (37%), Positives = 153/295 (51%), Gaps = 28/295 (9%)

Query: 1   MGSRALDITVVSASDLKTAGMFSKMNVYAVVTIFGESQT---TSVARDCGVRPTWNHQMR 57
           M  R+LD+T++SA DLK   +  K ++YAVV+I G+++T   T V +DCG +P W HQM+
Sbjct: 1   MECRSLDLTIISAEDLKDVQLIGKQDLYAVVSINGDARTKQKTKVDKDCGTKPKWKHQMK 60

Query: 58  FNIDEAAAMQNNLTIVYSIRSTGGCFGNSDLGEVFVPVKEMLLRSNGDDDKPMSYNITTP 117
             +D+AAA  N LT+V+ I +     G+  +GEV VPVKE+L ++ GD++K ++Y +  P
Sbjct: 61  LTVDDAAARDNRLTLVFEIVADRPIAGDKPVGEVSVPVKELLDQNKGDEEKTVTYAVRLP 120

Query: 118 GGRAKGVLNVSYKFGPSSSANNNNNNNN---NNNANQSNDNPGMAYAPQPPPPMPQGYAN 174
            G+AKG L  S+KFG   +  +++  +    +   +++ D P  AY     PP     + 
Sbjct: 121 NGKAKGSLKFSFKFGEKYTYGSSSGPHAPVPSAMDHKTMDQPVTAY-----PPGHGAPSA 175

Query: 175 PTAYPAPQKDVYPPP--PDAHKAALAYPAP-GYPPQPQAYPLPGGYPPPGYAAGAPAPPH 231
             A PA     YPP    D H     YP   GYP     YP PG YP  G   G P P  
Sbjct: 176 YPAPPAGPSSGYPPQGHDDKHDGVYGYPQQAGYPAGTGGYPPPGAYPQQGGYPGYP-PQQ 234

Query: 232 PGGY--APVQGPGGMNYQPSPPGSAMGPAGYAYAAPPAAPQQHSKNSNNSIKKKG 284
            GGY   P QGP G   Q  PP    GP GY        PQQ +       KK G
Sbjct: 235 QGGYPGYPPQGPYGYPQQGYPP---QGPYGY--------PQQQAHGKPQKPKKHG 278

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|3426060|emb|CAA07573.1| src2-like protein [Arabidopsis thaliana]

 Score =  151 bits (382), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 111/295 (37%), Positives = 153/295 (51%), Gaps = 28/295 (9%)

Query: 1   MGSRALDITVVSASDLKTAGMFSKMNVYAVVTIFGESQT---TSVARDCGVRPTWNHQMR 57
           M  R+LD+T++SA DLK   +  K ++YAVV+I G+++T   T V +DCG +P W HQM+
Sbjct: 1   MECRSLDLTIISAEDLKDVQLIGKQDLYAVVSINGDARTKQKTKVDKDCGTKPKWKHQMK 60

Query: 58  FNIDEAAAMQNNLTIVYSIRSTGGCFGNSDLGEVFVPVKEMLLRSNGDDDKPMSYNITTP 117
             +D+AAA  N LT+V+ I +     G+  +GEV VPVKE+L ++ GD++K ++Y +  P
Sbjct: 61  LTVDDAAARDNRLTLVFEIVADRPIAGDKPVGEVSVPVKELLDQNKGDEEKTVTYAVRLP 120

Query: 118 GGRAKGVLNVSYKFGPSSSANNNNNNNN---NNNANQSNDNPGMAYAPQPPPPMPQGYAN 174
            G+AKG L  S+KFG   +  +++  +    +   +++ D P  AY     PP     + 
Sbjct: 121 NGKAKGSLKFSFKFGEKYTYGSSSGPHAPVPSAMDHKTMDQPVTAY-----PPGHGAPSA 175

Query: 175 PTAYPAPQKDVYPPP--PDAHKAALAYPAP-GYPPQPQAYPLPGGYPPPGYAAGAPAPPH 231
             A PA     YPP    D H     YP   GYP     YP PG YP  G   G P P  
Sbjct: 176 YPAPPAGPSSGYPPQGHDDKHGGVYGYPQQAGYPAGTGGYPPPGAYPQQGGYPGYP-PQQ 234

Query: 232 PGGY--APVQGPGGMNYQPSPPGSAMGPAGYAYAAPPAAPQQHSKNSNNSIKKKG 284
            GGY   P QGP G   Q  PP    GP GY        PQQ +       KK G
Sbjct: 235 QGGYPGYPPQGPYGYPQQGYPP---QGPYGY--------PQQQAHGKPQKPKKHG 278

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297843702|ref|XP_002889732.1| hypothetical protein ARALYDRAFT_470988 [Arabidopsis lyrata subsp. lyrata] gi|297335574|gb|EFH65991.1| hypothetical protein ARALYDRAFT_470988 [Arabidopsis lyrata subsp. lyrata]

 Score =  140 bits (353), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 109/296 (36%), Positives = 154/296 (52%), Gaps = 44/296 (14%)

Query: 4   RALDITVVSASDLKTAGMFSKMNVYAVVTIFGESQT---TSVARDCGVRPTWNHQMRFNI 60
           R+LD+T++SA DLK   +  K ++YAVV+I G+++T   T V +DCG +P W HQM+  +
Sbjct: 1   RSLDLTIISAEDLKDIQLIGKQDLYAVVSINGDARTKQKTKVDKDCGTKPKWKHQMKLTV 60

Query: 61  DEAAAMQNNLTIVYSIRSTGGCFGNSDLGEVFVPVKEMLLRSNGDDDKPMSYNITTPGGR 120
           D+AAA +N LT+V+ I +     G+  +GEV VPVKE+L ++ GD++K ++Y +  P G+
Sbjct: 61  DDAAARENRLTLVFEIVADRPIAGDKPVGEVSVPVKELLDQNKGDEEKTVTYAVRLPNGK 120

Query: 121 AKGVLNVSYKFGPSSSANNNNNNNN---NNNANQSNDNPGMAYAPQPPPPMPQGYANPTA 177
           AKG L  S+KFG   +  +++  +    ++  +++ D P  AY     PP     +   A
Sbjct: 121 AKGSLKFSFKFGDKYTFGSSSAPHAPVPSSMDHKTMDQPVTAY-----PPGHGAPSAYPA 175

Query: 178 YPAPQKDVYPPPPDAHKAALAYPAPGYPPQPQAYPLP-------------GGYPPPGYAA 224
            PA     YPPP    K    Y   GYP Q    P               GGY  PGY  
Sbjct: 176 PPAGPSSGYPPPGHDDKHGGVY---GYPQQAGYPPAGPGGYPPPGAYPQQGGY--PGY-- 228

Query: 225 GAPAPPHPGGY--APVQGPGGMNYQPSPPGSAMGPAGY----AYAAPPAAPQQHSK 274
               PP  GGY   P QGP G   Q  PP    GP GY    AY   P  P++H K
Sbjct: 229 ---PPPQQGGYPGYPPQGPYGYPQQGYPP---QGPYGYPQQQAYGK-PQKPKKHGK 277

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255542702|ref|XP_002512414.1| conserved hypothetical protein [Ricinus communis] gi|223548375|gb|EEF49866.1| conserved hypothetical protein [Ricinus communis]

 Score =  137 bits (344), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 68/143 (47%), Positives = 92/143 (64%), Gaps = 9/143 (6%)

Query: 1   MGSRALDITVVSASDLKTAGMFSKMNVYAVVTIFG------ESQTTSVARDCGVRPTWNH 54
           M  R L+IT++SA D+K   MFSKM+VYA V+I G      + Q T V +DCG  PTWNH
Sbjct: 1   MECRNLEITLISAKDIKDVNMFSKMDVYAEVSIKGDHFNSKQKQKTPVDKDCGTNPTWNH 60

Query: 55  QMRFNIDEAAAMQNNLTIVYSIRSTGGCFGNSDLGEVFVPVKEMLLRSNGDDDKPMSYNI 114
            M+FNI EA+A +N LT+   + S    FG+ ++GEV VP+KE++    GD +  +SY +
Sbjct: 61  SMKFNIHEASAQENRLTVQIKLISD-RSFGDKEIGEVHVPIKELIDHKAGDAN--VSYGV 117

Query: 115 TTPGGRAKGVLNVSYKFGPSSSA 137
            TP G+AKG LN S+KFG    A
Sbjct: 118 RTPSGKAKGSLNFSFKFGEKFEA 140

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225450819|ref|XP_002283998.1| PREDICTED: uncharacterized protein LOC100245905 [Vitis vinifera] gi|147811137|emb|CAN76879.1| hypothetical protein VITISV_036709 [Vitis vinifera] gi|296089679|emb|CBI39498.3| unnamed protein product [Vitis vinifera]

 Score =  132 bits (332), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 88/224 (39%), Positives = 121/224 (54%), Gaps = 25/224 (11%)

Query: 1   MGSRALDITVVSASDLKTAGMFSKMNVYAVVTIFGE---SQTTSVARDCGVRPTWNHQMR 57
           M  RALDI V+ A DLK   +FSKM+VY VVTI G+    Q T V +D G  P WN  M+
Sbjct: 1   MEYRALDIKVLEAKDLKDVNLFSKMDVYVVVTISGDPRTVQKTPVDKDGGTSPKWNFSMK 60

Query: 58  FNIDEAAAMQNNLTIVYSIRSTGGCFGNSDLGEVFVPVKEMLLRSNGDD-DKPMSYNITT 116
           F +D+A A QN + + +++RS     G+ D+GEV+VP+KE+L  ++ D  D+ +S+ +  
Sbjct: 61  FTVDDALAHQNRIGLNFTLRSN-RALGDRDIGEVYVPLKELLDNASDDKVDRVVSFQVRK 119

Query: 117 PGGRAKGVLNVSYKFGPSSSANNNNNNNNNNNANQSNDNPGMAYAPQPPPPMPQGYANPT 176
             G+ +G L+ SYKFG   SA           A +  D+P MAY     P +  G  + +
Sbjct: 120 QSGKPQGTLSFSYKFGEKFSA--------PAPAARKADDPVMAY-----PAVAPGAGSSS 166

Query: 177 AYPAPQKDVYPPPPDAHKAALAYPAPGYPPQPQAYPLP--GGYP 218
           AY  P    YPP     + A   PA  YP    AYP P   GYP
Sbjct: 167 AYAYPPAGGYPP-----RGAYPPPAGAYPHHAGAYPYPPSSGYP 205

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225432286|ref|XP_002272904.1| PREDICTED: uncharacterized protein LOC100242678 [Vitis vinifera]

 Score =  128 bits (321), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 78/186 (41%), Positives = 103/186 (55%), Gaps = 20/186 (10%)

Query: 1   MGSRALDITVVSASDLKTAGMFSKMNVYAVVTIFGES---QTTSVARDCGVRPTWNHQMR 57
           M  R L+I V+SA DLK   + SKM+VY VV+I G+S   Q T V RD G  PTWN  M+
Sbjct: 1   MEYRTLEINVISAKDLKDVNLISKMDVYVVVSINGDSRSKQKTPVDRDGGTNPTWNFPMK 60

Query: 58  FNIDEAAAMQNNLTIVYSIRSTGGCFGNSDLGEVFVPVKEMLLRSNGDDDKPM---SYNI 114
           F +DE+AA QN LT+ + +R      G+ D+GEV VP+KE+L      + KP+   SY +
Sbjct: 61  FTVDESAAQQNRLTLSFKLRCE-RTLGDKDIGEVNVPIKELL--DPAGESKPIQFVSYQV 117

Query: 115 TTPGGRAKGVLNVSYKFGPSSSANNNNNNNNNNNANQSNDNPGMAYAPQPPPPMPQGYAN 174
             P G+ KG LN+SYKFG  S + +                P MAY P     +P+    
Sbjct: 118 RKPSGKPKGELNLSYKFGEKSMSQSATKAQ----------EPVMAYPP-AASVVPKADEP 166

Query: 175 PTAYPA 180
            TAYPA
Sbjct: 167 VTAYPA 172

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224123558|ref|XP_002330151.1| predicted protein [Populus trichocarpa] gi|222871607|gb|EEF08738.1| predicted protein [Populus trichocarpa]

 Score =  120 bits (301), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 60/138 (43%), Positives = 85/138 (61%), Gaps = 9/138 (6%)

Query: 1   MGSRALDITVVSASDLKTAGMFSKMNVYAVVTIFG------ESQTTSVARDCGVRPTWNH 54
           M  R+L+ITV+SA DLK A +F KM+VY VV++ G      + Q T V +D G  P WN 
Sbjct: 1   MECRSLEITVISAKDLKDANLFGKMDVYCVVSLKGDDYNSKQKQKTHVHKDSGPNPVWNF 60

Query: 55  QMRFNIDEAAAMQNNLTIVYSIRSTGGCFGNSDLGEVFVPVKEMLLRSNGDDDKPMSYNI 114
            ++F ID+ AA QN L + + +++     G+ D+G VFVPV E+L   +G     +SY++
Sbjct: 61  PLKFTIDDVAAQQNRLKLKFMLKAE-RMLGDKDVGVVFVPVNELLGAKDGKGS--LSYSV 117

Query: 115 TTPGGRAKGVLNVSYKFG 132
           T P GR KG LN  +KFG
Sbjct: 118 TAPRGRMKGTLNFLFKFG 135

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224125214|ref|XP_002319528.1| predicted protein [Populus trichocarpa] gi|222857904|gb|EEE95451.1| predicted protein [Populus trichocarpa]

 Score =  120 bits (300), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 75/187 (40%), Positives = 101/187 (54%), Gaps = 21/187 (11%)

Query: 1   MGSRALDITVVSASDLKTAGMFSKMNVYAVVTIFG------ESQTTSVARDCGVRPTWNH 54
           M  R L+ITV S  DLK   +F KM++Y VV+I G      + Q T V +DCG  P WN 
Sbjct: 1   MECRPLEITVASGKDLKDVNVFGKMDLYCVVSIKGDPHKSKQKQKTHVHKDCGPNPLWNF 60

Query: 55  QMRFNIDEAAAMQNNLTIVYSIRSTGGCFGNSDLGEVFVPVKEMLLRSNGDDDKPMSYNI 114
            M+FNIDEAAA QN L I + + +     G+ ++G V VPVKE+L   +G     MSY +
Sbjct: 61  PMKFNIDEAAAQQNRLQIKFKLLAE-RMMGDKEVGVVSVPVKELLDSKDGKGGL-MSYAV 118

Query: 115 TTPGGRAKGVLNVSYKFGPSSSANNNNNNNNNNNANQSNDNPGMAYAPQPPPPMPQGYAN 174
            TP G+ KG L+ S+ FG   SA           A ++ ++   A +P       +GY  
Sbjct: 119 KTPSGKMKGTLSFSFNFGEKVSA------PAPEKAKKTGEHVAAAASPA------KGYHE 166

Query: 175 P-TAYPA 180
           P TAYPA
Sbjct: 167 PVTAYPA 173

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356521871|ref|XP_003529574.1| PREDICTED: uncharacterized protein LOC100784458 [Glycine max]

 Score =  117 bits (294), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 70/184 (38%), Positives = 99/184 (53%), Gaps = 23/184 (12%)

Query: 1   MGSRALDITVVSASDLKTAGMFSKMNVYAVVTIFGESQT-TSVARDCGVRPTWNHQMRFN 59
           M  R L++ + SA DLK   +FSKM+VYAV+++ G+ +T T V R+ G  PTWN  ++F 
Sbjct: 1   MEHRTLELNLASAKDLKDLNIFSKMDVYAVLSLSGDQKTKTPVHRNGGTNPTWNFPVKFT 60

Query: 60  IDEAAAMQNNLTIVYSIRSTGGCFGNSDLGEVFVPVKEMLLR-SNGDDDKPMSYNITTPG 118
            DE+ A QN L +   IRS      + D+G+V VP+ E+L +  +G   + +SY +  P 
Sbjct: 61  FDESVARQNRLALEIKIRSERALATDKDIGQVHVPLMELLKQPGDGKSFQHVSYQVRKPS 120

Query: 119 GRAKGVLNVSYKFGPSSSANNNNNNNNNNNANQSNDNPGMAYAPQPPPPMPQGYANP-TA 177
           G+ KG LN SYKFG   +A                  P    AP P  P  +   +P TA
Sbjct: 121 GKPKGALNFSYKFGDEFAA------------------PAKVSAPAPTSPSHK--VDPVTA 160

Query: 178 YPAP 181
           YPAP
Sbjct: 161 YPAP 164

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|93115319|gb|ABE98328.1| SRC2-like protein [Capsicum annuum]

 Score =  114 bits (285), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 92/251 (36%), Positives = 120/251 (47%), Gaps = 48/251 (19%)

Query: 1   MGSRALDITVVSASDLKTAGMFSKMNVYAVVTIFGES-----QTTSVARDCGVRPTWNHQ 55
           M  R LDI V+SA ++K    FSKM+VYA V I   S     Q T V ++ G  P WNH 
Sbjct: 1   MELRPLDIKVISAENIKNVNTFSKMDVYAEVFISSYSNKSYRQKTLVDKNSGPNPKWNHS 60

Query: 56  MRFNIDEAAAMQNNLTIVYSIRSTGGCFGNSDLGEVFVPVKEMLLR--SNGDDDKPMSYN 113
           M+F +DE++  +  L +V  ++S     G+ ++GEV VPV EM  +  S+G  ++ + Y 
Sbjct: 61  MKFTLDESSINKPGLYLVIRLKSE-RTLGDKEIGEVSVPVNEMFNQETSSGAAERFVEYP 119

Query: 114 ITTPGGRAKGVLNVSYKFGPSSSANNNNNNNNNNNANQSNDNP-GMAYAPQPPPPMPQGY 172
           + T  G+ KG L  SYKFG   +A     + N+         P GMAY  Q       GY
Sbjct: 120 VVTESGKPKGTLIFSYKFGEKFTAPEKKKDVNHEPVTAYPAAPYGMAYNQQ-----NSGY 174

Query: 173 ANPTAYPAPQKDVYPPPPDAHKAALAYPAPGYPPQPQAYPLPGGYPPPGYAAGAPAPPHP 232
           A              PPP AH+        GY         P GYPP    AGAP    P
Sbjct: 175 AY-------------PPPQAHQG-------GY---------PAGYPP----AGAPGYAQP 201

Query: 233 G-GYAPVQGPG 242
           G GY PVQ PG
Sbjct: 202 GYGYPPVQQPG 212

Source: Capsicum annuum

Species: Capsicum annuum

Genus: Capsicum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	336
TAIR|locus:2036004	324	SRC2 "AT1G09070" [Arabidopsis	0.392	0.407	0.451	3.4e-29
TAIR|locus:2088334	360	AT3G16510 "AT3G16510" [Arabido	0.386	0.361	0.379	2.2e-21
TAIR|locus:504955431	289	AT4G15755 "AT4G15755" [Arabido	0.392	0.456	0.333	7.7e-16
TAIR|locus:2081745	298	AT3G62780 "AT3G62780" [Arabido	0.375	0.422	0.381	4.4e-14
TAIR|locus:2099946	156	AT3G55470 "AT3G55470" [Arabido	0.360	0.775	0.265	6.1e-07
TAIR|locus:2079762	122	AT3G05440 "AT3G05440" [Arabido	0.261	0.721	0.279	0.00014
TAIR|locus:2038461	147	AT1G63220 "AT1G63220" [Arabido	0.354	0.809	0.242	0.00031

TAIR|locus:2036004 SRC2 "AT1G09070" [Arabidopsis thaliana (taxid:3702)]

 Score = 324 (119.1 bits), Expect = 3.4e-29, P = 3.4e-29
 Identities = 61/135 (45%), Positives = 92/135 (68%)

Query:     1 MGSRALDITVVSASDLKTAGMFSKMNVYAVVTIFGESQT---TSVARDCGVRPTWNHQMR 57
             M  R+LD+T++SA DLK   +  K ++YAVV+I G+++T   T V +DCG +P W HQM+
Sbjct:     1 MECRSLDLTIISAEDLKDVQLIGKQDLYAVVSINGDARTKQKTKVDKDCGTKPKWKHQMK 60

Query:    58 FNIDEAAAMQNNLTIVYSIRSTGGCFGNSDLGEVFVPVKEMLLRSNGDDDKPMSYNITTP 117
               +D+AAA  N LT+V+ I +     G+  +GEV VPVKE+L ++ GD++K ++Y +  P
Sbjct:    61 LTVDDAAARDNRLTLVFEIVADRPIAGDKPVGEVSVPVKELLDQNKGDEEKTVTYAVRLP 120

Query:   118 GGRAKGVLNVSYKFG 132
              G+AKG L  S+KFG
Sbjct:   121 NGKAKGSLKFSFKFG 135

GO:0000326 "protein storage vacuole" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0006623 "protein targeting to vacuole" evidence=RCA;TAS

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0006820 "anion transport" evidence=RCA

GO:0006862 "nucleotide transport" evidence=RCA

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=RCA

GO:0006944 "cellular membrane fusion" evidence=RCA

GO:0009611 "response to wounding" evidence=RCA

GO:0009612 "response to mechanical stimulus" evidence=RCA

GO:0009646 "response to absence of light" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0015696 "ammonium transport" evidence=RCA

GO:0015802 "basic amino acid transport" evidence=RCA

GO:0043069 "negative regulation of programmed cell death" evidence=RCA

GO:0043090 "amino acid import" evidence=RCA

GO:0043269 "regulation of ion transport" evidence=RCA

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:2088334 AT3G16510 "AT3G16510" [Arabidopsis thaliana (taxid:3702)]

 Score = 223 (83.6 bits), Expect = 2.2e-21, Sum P(2) = 2.2e-21
 Identities = 55/145 (37%), Positives = 80/145 (55%)

Query:     1 MGSRALDITVVSASDLKTAGMFSKMNVYAVVTIFGES------QTTSVARDCGVRPTWNH 54
             M +  L++ V SA DL+   + +KM+VYAVV I G+       + T + R     PTWNH
Sbjct:     1 MANLTLELNVYSAKDLENVNLITKMDVYAVVWITGDDSRKNHKEKTPIDRTGESEPTWNH 60

Query:    55 QMRFNIDEAAAMQNNLTIVYSIRSTGGCFGNSDLGEVFVPVKEMLL-----RSNGDDDKP 109
              ++F++D+  A +  LT+V  +      FG+ DLGEV VPV E+L       SNGD    
Sbjct:    61 TVKFSVDQRLAHEGRLTLVVKL-VCDRIFGDKDLGEVQVPVLELLHGSSSPSSNGDGQGM 119

Query:   110 M---SYNITTPGGRAKGVLNVSYKF 131
             M   +Y + TP G+ +G L  SY+F
Sbjct:   120 MRFVTYQVRTPFGKGQGSLTFSYRF 144

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:504955431 AT4G15755 "AT4G15755" [Arabidopsis thaliana (taxid:3702)]

 Score = 198 (74.8 bits), Expect = 7.7e-16, P = 7.7e-16
 Identities = 49/147 (33%), Positives = 80/147 (54%)

Query:     1 MGSRALDITVVSASDLKTAGMFSKMNVYAVVTIFGESQT------TSVARDCGVRPTWNH 54
             M +  L++ + SA +L    + +KMNV+  +TI GE+        T+V R  G  PTWN 
Sbjct:     1 MANLTLELNINSARNLLNVNLITKMNVFTAITINGENTRKKQKAKTTVDRYGGSNPTWNQ 60

Query:    55 QMRFNIDEAAAMQNNLTIVYSIRSTGGCFGNSDLGEVFVPVKEMLLRS----NGDDD--- 107
              ++F++DE +A   + ++V  + S     GN ++G V +P+ E+L  +    NGD +   
Sbjct:    61 TIKFSVDERSARGGHSSLVMRVISRR-VLGNKEIGRVNIPLLELLNATTPSFNGDGNDHE 119

Query:   108 -KPMSYNITTPGGRAKGVLNVSYKFGP 133
              K MSY + T  G+  G L+ SY+F P
Sbjct:   120 MKLMSYQVRTSSGKRSGSLSFSYRFKP 146

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2081745 AT3G62780 "AT3G62780" [Arabidopsis thaliana (taxid:3702)]

 Score = 183 (69.5 bits), Expect = 4.4e-14, P = 4.4e-14
 Identities = 55/144 (38%), Positives = 76/144 (52%)

Query:     1 MGSRALDITVVSASDLKTAGMFSKMNVYAVVTIFGE-------SQTTSVARDCGVRPTW- 52
             MG+R+L+I V SA  LK     SKM+V+  V + G+        Q T  ARD G  P W 
Sbjct:     1 MGTRSLEINVTSAKGLKKV---SKMDVFVAVKLSGDPKCSDHREQRTQAARDGGTSPKWS 57

Query:    53 NHQMRFNIDEAAAMQNNLTIVYSIR--STGGCFGNSDLGEVFVPVKEMLLRSNGDDDKPM 110
             N  M+F +D+  A  N L I + I+    GG   + D+GEV V VKE LL   G+D    
Sbjct:    58 NDVMKFILDQNLAEANRLVITFKIKCEQRGGV--DKDIGEVHVQVKE-LLDHLGNDKTGQ 114

Query:   111 SYNITTPGGRAKGVLNVSYKF-GP 133
              Y +T   G++K  ++ +Y F GP
Sbjct:   115 RY-VTYQIGKSKADISFTYSFTGP 137

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2099946 AT3G55470 "AT3G55470" [Arabidopsis thaliana (taxid:3702)]

 Score = 114 (45.2 bits), Expect = 6.1e-07, P = 6.1e-07
 Identities = 35/132 (26%), Positives = 65/132 (49%)

Query:     6 LDITVVSASDLKTAGMFSKMNVYAVVTIFGESQTTSVARDCGVR-PTWNHQMRFNID-EA 63
             L+++++S   LK +    K++ Y  +   G+++ +SVA++ G R PTWN ++++  +   
Sbjct:     6 LEVSLISGKGLKRSDFLGKIDPYVEIQYKGQTRKSSVAKEDGGRNPTWNDKLKWRAEFPG 65

Query:    64 AAMQNNLTIVYSIRSTGGCFGNSD-LGEVFVPVKEML---LRSNGDDDKPMSYNITTPGG 119
             +     L +      T   F + D +GE  V VKE+L   +     + +P  YNI     
Sbjct:    66 SGADYKLIVKVMDHDT---FSSDDFIGEATVHVKELLEMGVEKGTAELRPTKYNIVDSDL 122

Query:   120 RAKG--VLNVSY 129
                G  ++ VSY
Sbjct:   123 SFVGELLIGVSY 134

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009963 "positive regulation of flavonoid biosynthetic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

TAIR|locus:2079762 AT3G05440 "AT3G05440" [Arabidopsis thaliana (taxid:3702)]

 Score = 94 (38.1 bits), Expect = 0.00014, P = 0.00014
 Identities = 26/93 (27%), Positives = 48/93 (51%)

Query:     6 LDITVVSASDLKTAGMFSKMNVYAVVTIF-G--ESQTTSVARDCGVRPTWNHQMRFNIDE 62
             ++I V+SA DL +  +  +  VY  V++  G  + Q T  A        WN++M+F I++
Sbjct:     7 VEINVLSAQDLNSINLLFRPTVYVSVSVTRGSRDKQVTPAAAWDKKFLRWNYRMKFYIED 66

Query:    63 AAAMQNNLTIVYSIRSTGGCFGNSDL-GEVFVP 94
                 +N    V+ I+     FG+  + G++F+P
Sbjct:    67 DKVRRNESVFVFQIKCKR-FFGSDQVVGKLFIP 98

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2038461 AT1G63220 "AT1G63220" [Arabidopsis thaliana (taxid:3702)]

 Score = 100 (40.3 bits), Expect = 0.00031, P = 0.00031
 Identities = 31/128 (24%), Positives = 55/128 (42%)

Query:     6 LDITVVSASDLKTAGMFSKMNVYAVVTIFGESQTTSVARDCGVRPTWNHQMRFNIDEAAA 65
             L++ +VSA  L+ A   + M+ Y  +T   + Q ++VA   G  P WN    F + E   
Sbjct:     6 LEVVLVSAKGLEDADFLNNMDPYVQLTCRTQDQKSNVAEGMGTTPEWNETFIFTVSEGTT 65

Query:    66 MQNNLTIVYSIRSTGGCFGNSDLGEVFVPVKEMLLRSNGDDDKPMSYNITTPGGRAKGVL 125
                 L      +  G    +  +GE  +P++ + +  +     P +YN+       KG +
Sbjct:    66 ---ELKAKIFDKDVGT--EDDAVGEATIPLEPVFVEGS---IPPTAYNVVKDE-EYKGEI 116

Query:   126 NVSYKFGP 133
              V+  F P
Sbjct:   117 WVALSFKP 124


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.315   0.134   0.403    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      336       187   0.00085  110 3  11 23  0.36    33
                                                     31  0.41    35


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  7
  No. of states in DFA:  582 (62 KB)
  Total size of DFA:  155 KB (2093 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  14.03u 0.15s 14.18t   Elapsed:  00:00:00
  Total cpu time:  14.03u 0.15s 14.18t   Elapsed:  00:00:00
  Start:  Fri May 10 03:43:49 2013   End:  Fri May 10 03:43:49 2013

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	336
cd04051	125	cd04051, C2_SRC2_like, C2 domain present in Soybea	2e-37
smart00239	101	smart00239, C2, Protein kinase C conserved region	1e-12
cd00030	102	cd00030, C2, C2 domain	4e-12
pfam00168	85	pfam00168, C2, C2 domain	3e-10
cd08681	118	cd08681, C2_fungal_Inn1p-like, C2 domain found in	7e-08
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	1e-07
pfam09770	804	pfam09770, PAT1, Topoisomerase II-associated prote	7e-07
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	1e-06
pfam09770	804	pfam09770, PAT1, Topoisomerase II-associated prote	2e-06
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	7e-06
PRK14951	618	PRK14951, PRK14951, DNA polymerase III subunits ga	7e-06
cd04049	124	cd04049, C2_putative_Elicitor-responsive_gene, C2	9e-06
pfam09770	804	pfam09770, PAT1, Topoisomerase II-associated prote	1e-05
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	2e-05
PHA03378	991	PHA03378, PHA03378, EBNA-3B; Provisional	2e-05
cd00275	128	cd00275, C2_PLC_like, C2 domain present in Phospho	3e-05
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	4e-05
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	5e-05
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	6e-05
PRK12323	700	PRK12323, PRK12323, DNA polymerase III subunits ga	1e-04
PRK12323	700	PRK12323, PRK12323, DNA polymerase III subunits ga	1e-04
PRK12323	700	PRK12323, PRK12323, DNA polymerase III subunits ga	1e-04
pfam09770	804	pfam09770, PAT1, Topoisomerase II-associated prote	2e-04
cd04044	124	cd04044, C2A_Tricalbin-like, C2 domain first repea	2e-04
pfam04652	315	pfam04652, DUF605, Vta1 like	2e-04
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	3e-04
PRK12323	700	PRK12323, PRK12323, DNA polymerase III subunits ga	3e-04
PRK14086	617	PRK14086, dnaA, chromosomal replication initiation	3e-04
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	4e-04
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	4e-04
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	4e-04
pfam04652	315	pfam04652, DUF605, Vta1 like	5e-04
PRK03427	333	PRK03427, PRK03427, cell division protein ZipA; Pr	5e-04
pfam03153	332	pfam03153, TFIIA, Transcription factor IIA, alpha/	5e-04
PRK14950	585	PRK14950, PRK14950, DNA polymerase III subunits ga	5e-04
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	6e-04
PRK14951	618	PRK14951, PRK14951, DNA polymerase III subunits ga	7e-04
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	7e-04
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	7e-04
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	7e-04
PRK10263	1355	PRK10263, PRK10263, DNA translocase FtsK; Provisio	7e-04
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	0.001
pfam09770	804	pfam09770, PAT1, Topoisomerase II-associated prote	0.001
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	0.001
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	0.001
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	0.001
PRK14086	617	PRK14086, dnaA, chromosomal replication initiation	0.001
TIGR01628	562	TIGR01628, PABP-1234, polyadenylate binding protei	0.001
pfam12868	135	pfam12868, DUF3824, Domain of unknwon function (DU	0.001
PRK14950	585	PRK14950, PRK14950, DNA polymerase III subunits ga	0.002
PRK10263	1355	PRK10263, PRK10263, DNA translocase FtsK; Provisio	0.002
pfam07223	357	pfam07223, DUF1421, Protein of unknown function (D	0.002
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	0.003
pfam12868	135	pfam12868, DUF3824, Domain of unknwon function (DU	0.003
pfam05518	753	pfam05518, Totivirus_coat, Totivirus coat protein	0.003
pfam07271	279	pfam07271, Cytadhesin_P30, Cytadhesin P30/P32	0.003
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	0.004
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	0.004
cd04046	126	cd04046, C2_Calpain, C2 domain present in Calpain	0.004
PRK12270	1228	PRK12270, kgd, alpha-ketoglutarate decarboxylase;	0.004
PTZ00395	1560	PTZ00395, PTZ00395, Sec24-related protein; Provisi	0.004

>gnl|CDD|176016 cd04051, C2_SRC2_like, C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins

 Score =  130 bits (329), Expect = 2e-37
 Identities = 49/125 (39%), Positives = 70/125 (56%), Gaps = 2/125 (1%)

Query: 5   ALDITVVSASDLKTAGMFSKMNVYAVVTIFGES-QTTSVARDCGVRPTWNHQMRFNIDEA 63
            L+IT++SA DLK   +F KM VYAVV I     Q+T V RD G  PTWN  +RF +DE 
Sbjct: 1   TLEITIISAEDLKNVNLFGKMKVYAVVWIDPSHKQSTPVDRDGGTNPTWNETLRFPLDER 60

Query: 64  AAMQNNLTIVYSIRSTGGCFGNSDLGEVFVPVKEMLLRSNGDDDKP-MSYNITTPGGRAK 122
              Q  L +   +       G+  +GEV VP+K++L  ++   +   +SY +  P G+ +
Sbjct: 61  LLQQGRLALTIEVYCERPSLGDKLIGEVRVPLKDLLDGASPAGELRFLSYQLRRPSGKPQ 120

Query: 123 GVLNV 127
           GVLN 
Sbjct: 121 GVLNF 125

SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 125

>gnl|CDD|214577 smart00239, C2, Protein kinase C conserved region 2 (CalB)

 Score = 62.9 bits (153), Expect = 1e-12
 Identities = 24/100 (24%), Positives = 43/100 (43%), Gaps = 10/100 (10%)

Query: 6   LDITVVSASDLKTAGMFSKMNVYAVVTIFGESQT---TSVARDCGVRPTWNHQMRFNIDE 62
           L + ++SA +L       K + Y  V++ G+ +    T V ++    P WN    F +  
Sbjct: 2   LTVKIISARNLPPKDKGGKSDPYVKVSLDGDPKEKKKTKVVKNTLN-PVWNETFEFEVPP 60

Query: 63  AAAMQNNLTI-VYSIRSTGGCFGNSDLGEVFVPVKEMLLR 101
                  L I VY     G    +  +G+V +P+ ++LL 
Sbjct: 61  PEL--AELEIEVYDKDRFG---RDDFIGQVTIPLSDLLLG 95

Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotagmins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles. Length = 101

>gnl|CDD|175973 cd00030, C2, C2 domain

 Score = 61.3 bits (149), Expect = 4e-12
 Identities = 25/103 (24%), Positives = 46/103 (44%), Gaps = 8/103 (7%)

Query: 6   LDITVVSASDLKTAGMFSKMNVYAVVTIFGE-SQTTSVARDCGVRPTWNHQMRFNIDEAA 64
           L +TV+ A +L    +  K + Y  V++ G+    T V ++  + P WN    F + +  
Sbjct: 1   LRVTVIEARNLPAKDLNGKSDPYVKVSLGGKQKFKTKVVKNT-LNPVWNETFEFPVLD-- 57

Query: 65  AMQNNLTI-VYSIRSTGGCFGNSDLGEVFVPVKEMLLRSNGDD 106
              + LT+ V+          +  LGEV +P+ E+L      +
Sbjct: 58  PESDTLTVEVWDKDRFS---KDDFLGEVEIPLSELLDSGKEGE 97

The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 102

>gnl|CDD|215765 pfam00168, C2, C2 domain

 Score = 55.7 bits (135), Expect = 3e-10
 Identities = 26/91 (28%), Positives = 41/91 (45%), Gaps = 12/91 (13%)

Query: 6  LDITVVSASDLKTAGMFSKMNVYAVVTIFGE---SQTTSVARDCGVRPTWNHQMRFNIDE 62
          L +TV+SA +L    +  K + Y  V++ G+   ++ T V ++  + P WN    F +  
Sbjct: 1  LRVTVISAKNLPPKDLNGKSDPYVKVSLGGQKKDTKKTKVVKNT-LNPVWNETFTFEVTL 59

Query: 63 AAAMQNNLTI-VYSIRSTGGCFGNSD-LGEV 91
                 L I VY        FG  D +GEV
Sbjct: 60 PEL--AELRIEVYDYDR----FGKDDFIGEV 84

Length = 85

>gnl|CDD|176063 cd08681, C2_fungal_Inn1p-like, C2 domain found in fungal Ingression 1 (Inn1) proteins

 Score = 49.9 bits (120), Expect = 7e-08
 Identities = 17/57 (29%), Positives = 27/57 (47%)

Query: 6  LDITVVSASDLKTAGMFSKMNVYAVVTIFGESQTTSVARDCGVRPTWNHQMRFNIDE 62
          L + V+ A +L       K + Y V+ I G ++ T      G  P W+ ++RF I E
Sbjct: 3  LVVVVLKARNLPNKRKLDKQDPYCVLRIGGVTKKTKTDFRGGQHPEWDEELRFEITE 59

Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contributing both to membrane ingression, as well as to stability of the contracting ring. Additionally, Inn1 might induce curvature of the plasma membrane adjacent to the contracting ring, thereby promoting ingression of the membrane. It has been shown that the C2 domain of human synaptotagmin induces curvature in target membranes and thereby contributes to fusion of these membranes with synaptic vesicles. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 118

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 52.7 bits (127), Expect = 1e-07
 Identities = 31/118 (26%), Positives = 36/118 (30%), Gaps = 1/118 (0%)

Query: 157 GMAYAPQPPPPMPQGYANPTAYPAPQKDVYPPPPDAHKAALAYPAPGYPPQPQAYPLPGG 216
            +  A     P     +   A PA         P A  A     AP   P P   P P  
Sbjct: 384 RLGVAGGAGAPAAAAPSAAAAAPAAAPAPAAAAPAAAAAPAPAAAPQPAPAPAPAPAPPS 443

Query: 217 YPPPGYAAGAPAPPHPGGYAPVQGPGGMNYQPSPPGSAMGP-AGYAYAAPPAAPQQHS 273
                 A GAP+PP     +    P            A  P A  A AA PAAP   +
Sbjct: 444 PAGNAPAGGAPSPPPAAAPSAQPAPAPAAAPEPTAAPAPAPPAAPAPAAAPAAPAAPA 501

Length = 824

>gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1

 Score = 50.5 bits (121), Expect = 7e-07
 Identities = 35/135 (25%), Positives = 41/135 (30%), Gaps = 10/135 (7%)

Query: 156 PGMAYAPQPPPPMPQGYANPTAYPAPQKDVYPPPPDAHKAALAYPAPGYPPQPQAYPLPG 215
              A+  Q PP  P GY  P      Q       P   +A    P P  P  PQ  P   
Sbjct: 187 RQAAFPQQGPPEQPPGYPQPPQGHPEQVQPQQFLPAPSQAPAQPPLP--PQLPQQPPPLQ 244

Query: 216 GYPPPGYAAGAPAPP--HPGGYA----PVQGPGGMNYQPSPPGSAMGPAGYAYAAPPAAP 269
               PG +   P PP   P        P   P   N     PG   G    A   PP  P
Sbjct: 245 QPQFPGLSQQMPPPPPQPPQQQQQPPQPQAQPPPQNQPTPHPGLPQG--QNAPLPPPQQP 302

Query: 270 QQHSKNSNNSIKKKG 284
           Q          +++G
Sbjct: 303 QLLPLVQQPQGQQRG 317

Members of this family are necessary for accurate chromosome transmission during cell division. Length = 804

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 49.6 bits (119), Expect = 1e-06
 Identities = 28/111 (25%), Positives = 32/111 (28%), Gaps = 3/111 (2%)

Query: 161 APQPPPPMPQGYANPTAYPAPQKDVYPPPPDAHKAALAYPAPGYPPQPQAYPLPGGYPPP 220
           AP  PPP P   A      A      P P     A     A     QP         P P
Sbjct: 677 APAAPPPAPAPAAPAAPAGAAPAQPAPAPAATPPAG---QADDPAAQPPQAAQGASAPSP 733

Query: 221 GYAAGAPAPPHPGGYAPVQGPGGMNYQPSPPGSAMGPAGYAYAAPPAAPQQ 271
                 P PP P       G       P  P  A  PA     +PP+  ++
Sbjct: 734 AADDPVPLPPEPDDPPDPAGAPAQPPPPPAPAPAAAPAAAPPPSPPSEEEE 784

Length = 824

>gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1

 Score = 49.0 bits (117), Expect = 2e-06
 Identities = 34/145 (23%), Positives = 42/145 (28%), Gaps = 21/145 (14%)

Query: 147 NNANQSNDNPGMAYAPQPPP---PMP--QGYANPTAY-PAPQKDVYPPPPDAHKAAL--- 197
           +  +        +  P+  P   P P   G A      P    +  P P    +  L   
Sbjct: 98  STFSPCQSGYEASTDPEYIPDLQPDPSLWGTAPKPEPQPPQAPESQPQPQTPAQKMLSLE 157

Query: 198 -------AYPAPGYPPQPQAYPLPGGYPPPGYA-AGAPAPPHPGGY--APVQGPGGMNYQ 247
                          PQP    LP G PP   A      P  P GY   P   P  +  Q
Sbjct: 158 EVEAQLQQRQQAPQLPQPPQQVLPQGMPPRQAAFPQQGPPEQPPGYPQPPQGHPEQVQPQ 217

Query: 248 PSPPGSAMGPAGYAYAAPPAAPQQH 272
              P  +  PA      PP  PQQ 
Sbjct: 218 QFLPAPSQAPAQPPL--PPQLPQQP 240

Members of this family are necessary for accurate chromosome transmission during cell division. Length = 804

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 47.3 bits (113), Expect = 7e-06
 Identities = 31/120 (25%), Positives = 33/120 (27%), Gaps = 4/120 (3%)

Query: 154 DNPGMAYAPQPPPPMPQG----YANPTAYPAPQKDVYPPPPDAHKAALAYPAPGYPPQPQ 209
             PG A    PP P   G     A P A  AP     P P  A  A     A   P    
Sbjct: 590 PAPGAAGGEGPPAPASSGPPEEAARPAAPAAPAAPAAPAPAGAAAAPAEASAAPAPGVAA 649

Query: 210 AYPLPGGYPPPGYAAGAPAPPHPGGYAPVQGPGGMNYQPSPPGSAMGPAGYAYAAPPAAP 269
               P     P  + G    P   G A    P       +P   A         AP A P
Sbjct: 650 PEHHPKHVAVPDASDGGDGWPAKAGGAAPAAPPPAPAPAAPAAPAGAAPAQPAPAPAATP 709

Length = 824

>gnl|CDD|237865 PRK14951, PRK14951, DNA polymerase III subunits gamma and tau; Provisional

 Score = 47.4 bits (113), Expect = 7e-06
 Identities = 33/111 (29%), Positives = 37/111 (33%), Gaps = 8/111 (7%)

Query: 161 APQPPPPMPQGYANPTAYPAPQKDVYPPPPDAHKAALAYPAPGYPPQPQAYPL--PGGYP 218
            P+   P     A   A PAP       P  A  A  A PA   P    A     P   P
Sbjct: 383 RPEAAAPAAAPVAQAAAAPAPA----AAPAAAASAPAAPPAAAPPAPVAAPAAAAPAAAP 438

Query: 219 PPGYAAGAPAPPHPGGYAPVQGPGGMNYQPSPPGSAMGPAGYAYAAPPAAP 269
               AA A AP  P   AP      +   P P  ++   A    AAP AA 
Sbjct: 439 AAAPAAVALAPAPPAQAAPETVAIPVRVAPEPAVAS--AAPAPAAAPAAAR 487

Length = 618

>gnl|CDD|176014 cd04049, C2_putative_Elicitor-responsive_gene, C2 domain present in the putative elicitor-responsive gene

 Score = 44.2 bits (105), Expect = 9e-06
 Identities = 19/115 (16%), Positives = 46/115 (40%), Gaps = 10/115 (8%)

Query: 6   LDITVVSASDLKTAGMFSKMNVYAVVTIFGESQTTSVARDCGVRPTWNHQMRFNIDEAAA 65
           L++ ++SA  L+      K++ Y ++    + + + VA+  G  P WN + +F ++    
Sbjct: 3   LEVLLISAKGLQDTDFLGKIDPYVIIQCRTQERKSKVAKGDGRNPEWNEKFKFTVEYPGW 62

Query: 66  MQN---NLTIVYSIRSTGGCFGNSDLGEVFVPVKEMLLRSNGDDDKPMSYNITTP 117
             +    L I+     +   F    +GE  + +K +        +   +  +   
Sbjct: 63  GGDTKLILRIMDKDNFSDDDF----IGEATIHLKGLFEEGV---EPGTAELVPAK 110

In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members have a type-II topology. Length = 124

>gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1

 Score = 46.7 bits (111), Expect = 1e-05
 Identities = 23/114 (20%), Positives = 28/114 (24%), Gaps = 2/114 (1%)

Query: 161 APQPPPPMPQGYANPTAYPAPQKDVYPPPPDAHKAALAYPAPGYPPQPQAYPLPGGYPPP 220
               P   P     P   P     +  P        +  P P  P Q Q  P P   PPP
Sbjct: 219 FLPAPSQAPAQPPLPPQLPQQPPPLQQPQFPGLSQQMPPPPPQPPQQQQQPPQPQAQPPP 278

Query: 221 GYAAGAPAPPHPGGYAPVQGPGGMNYQPS--PPGSAMGPAGYAYAAPPAAPQQH 272
                       G  AP+  P      P    P        +       + QQ 
Sbjct: 279 QNQPTPHPGLPQGQNAPLPPPQQPQLLPLVQQPQGQQRGPQFREQLVQLSQQQR 332

Members of this family are necessary for accurate chromosome transmission during cell division. Length = 804

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 45.7 bits (109), Expect = 2e-05
 Identities = 29/111 (26%), Positives = 34/111 (30%), Gaps = 7/111 (6%)

Query: 161 APQPPPPMPQGYANPTAYPAPQKDVYPPPPDAHKAALAYPAPGYPPQPQAYPLPGGYPPP 220
              P  P P G A   A  +         P+ H   +A P           P   G   P
Sbjct: 621 PAAPAAPAPAGAAAAPAEASAAPAPGVAAPEHHPKHVAVPDASDGGDGW--PAKAGGAAP 678

Query: 221 GYAAGAPAPPHPGGYAPVQGPGGMNYQPSPPGSAMGPAGYAYAAPPAAPQQ 271
                APAP  P   A          QP+P  +A  PAG A       PQ 
Sbjct: 679 AAPPPAPAPAAPAAPAGAAPA-----QPAPAPAATPPAGQADDPAAQPPQA 724

Length = 824

>gnl|CDD|223065 PHA03378, PHA03378, EBNA-3B; Provisional

 Score = 46.2 bits (109), Expect = 2e-05
 Identities = 40/127 (31%), Positives = 42/127 (33%), Gaps = 16/127 (12%)

Query: 158 MAYAPQPPPPMPQGYANPTAYPAPQKDVYPPPPDAHKAALAYP---APGYPPQPQAYP-- 212
           M   P+ P PM    A P     P        P A     A P   APG    P A P  
Sbjct: 694 MQPPPRAPTPMRPPAAPPGRAQRPAAATGRARPPAAAPGRARPPAAAPGRARPPAAAPGR 753

Query: 213 ------LPGGYPPPGYAAGAPAPPHP--GGYAPVQGPGGMNYQPSPPGSAMGPAGYAYAA 264
                  PG   PP  A GAP P  P     AP Q P G    P+P              
Sbjct: 754 ARPPAAAPGRARPPAAAPGAPTPQPPPQAPPAPQQRPRG---APTPQPPPQAGPTSMQLM 810

Query: 265 PPAAPQQ 271
           P AAP Q
Sbjct: 811 PRAAPGQ 817

Length = 991

>gnl|CDD|175974 cd00275, C2_PLC_like, C2 domain present in Phosphoinositide-specific phospholipases C (PLC)

 Score = 42.5 bits (101), Expect = 3e-05
 Identities = 18/63 (28%), Positives = 26/63 (41%), Gaps = 8/63 (12%)

Query: 6  LDITVVSASDL-KTAGM-FSKMNVYAVVTIFGE------SQTTSVARDCGVRPTWNHQMR 57
          L I ++S   L K  G   S ++ Y  V I G          T V ++ G  P WN    
Sbjct: 4  LTIKIISGQQLPKPKGDKGSIVDPYVEVEIHGLPADDSAKFKTKVVKNNGFNPVWNETFE 63

Query: 58 FNI 60
          F++
Sbjct: 64 FDV 66

PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-II topology. Length = 128

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 45.0 bits (107), Expect = 4e-05
 Identities = 28/112 (25%), Positives = 33/112 (29%), Gaps = 5/112 (4%)

Query: 161 APQPPPPMPQGYANPTAYPAPQKDVYPPPPDAHKAALAYPAPGYPPQPQAYPLPGGYPPP 220
           AP P    P   A P    APQ    P P  A  +       G  P P     P   P P
Sbjct: 409 APAPAAAAPAAAAAPAPAAAPQPAPAPAPAPAPPSPAGNAPAGGAPSPPPAAAPSAQPAP 468

Query: 221 GYAAGAPAPPHPGGYAPVQGPGGMNYQPSPPGSAMGPAGYAYAAPPAAPQQH 272
             AA       P    P           + P +   PA  A A   A  ++ 
Sbjct: 469 APAAAPEPTAAPAPAPPAAPA-----PAAAPAAPAAPAAPAGADDAATLRER 515

Length = 824

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 44.6 bits (106), Expect = 5e-05
 Identities = 26/112 (23%), Positives = 29/112 (25%)

Query: 161 APQPPPPMPQGYANPTAYPAPQKDVYPPPPDAHKAALAYPAPGYPPQPQAYPLPGGYPPP 220
           A    PP P     P     P     P  P A   A A  AP       A  +      P
Sbjct: 595 AGGEGPPAPASSGPPEEAARPAAPAAPAAPAAPAPAGAAAAPAEASAAPAPGVAAPEHHP 654

Query: 221 GYAAGAPAPPHPGGYAPVQGPGGMNYQPSPPGSAMGPAGYAYAAPPAAPQQH 272
            + A   A     G+    G       P  P  A   A    A    AP   
Sbjct: 655 KHVAVPDASDGGDGWPAKAGGAAPAAPPPAPAPAAPAAPAGAAPAQPAPAPA 706

Length = 824

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 44.5 bits (105), Expect = 6e-05
 Identities = 27/121 (22%), Positives = 31/121 (25%)

Query: 149  ANQSNDNPGMAYAPQPPPPMPQGYANPTAYPAPQKDVYPPPPDAHKAALAYPAPGYPPQP 208
            A Q++     A AP   P  P     P     P     PP P    A  A P        
Sbjct: 2728 ARQASPALPAAPAPPAVPAGPATPGGPARPARPPTTAGPPAPAPPAAPAAGPPRRLTRPA 2787

Query: 209  QAYPLPGGYPPPGYAAGAPAPPHPGGYAPVQGPGGMNYQPSPPGSAMGPAGYAYAAPPAA 268
             A         P     A  P      A    P      P PP ++  P        P  
Sbjct: 2788 VASLSESRESLPSPWDPADPPAAVLAPAAALPPAASPAGPLPPPTSAQPTAPPPPPGPPP 2847

Query: 269  P 269
            P
Sbjct: 2848 P 2848

Length = 3151

>gnl|CDD|237057 PRK12323, PRK12323, DNA polymerase III subunits gamma and tau; Provisional

 Score = 43.7 bits (103), Expect = 1e-04
 Identities = 30/115 (26%), Positives = 35/115 (30%), Gaps = 3/115 (2%)

Query: 158 MAYAPQPPPPMPQGYANPTAYPA--PQKDVYPPPPDAHKAALAYPAPGYPPQPQAYPLPG 215
           +A A Q     P G   P   PA  P     P        A A  A      P A P P 
Sbjct: 433 LAAARQASARGPGGAPAPAPAPAAAPAAAARPAAAGPRPVAAAAAAAPARAAPAAAPAPA 492

Query: 216 GYPPPGYAAGAPAPPHPGGYAPVQGPGGMNYQPSP-PGSAMGPAGYAYAAPPAAP 269
              PP +    P    P    P   P G   +  P P +A     +   AP  A 
Sbjct: 493 DDDPPPWEELPPEFASPAPAQPDAAPAGWVAESIPDPATADPDDAFETLAPAPAA 547

Length = 700

>gnl|CDD|237057 PRK12323, PRK12323, DNA polymerase III subunits gamma and tau; Provisional

 Score = 43.3 bits (102), Expect = 1e-04
 Identities = 37/122 (30%), Positives = 41/122 (33%), Gaps = 8/122 (6%)

Query: 152 SNDNPGMAYAPQP-PPPMPQGYANPTAYPAPQKDVYPPPPDAHKAALAYPAPGYPPQPQA 210
           S   PG A AP P P   P       A PA           A   A A PA    P    
Sbjct: 440 SARGPGGAPAPAPAPAAAPA----AAARPAAAGPRPVAAAAAAAPARAAPAAAPAPADDD 495

Query: 211 YPLPGGYPPPGYAAGAPAPPHPG--GYAPVQGPGGMNYQPSPPGSAMGPAGYAYAAPPAA 268
            P P    PP +A+ APA P     G+     P      P      + PA  A  AP AA
Sbjct: 496 PP-PWEELPPEFASPAPAQPDAAPAGWVAESIPDPATADPDDAFETLAPAPAAAPAPRAA 554

Query: 269 PQ 270
             
Sbjct: 555 AA 556

Length = 700

>gnl|CDD|237057 PRK12323, PRK12323, DNA polymerase III subunits gamma and tau; Provisional

 Score = 43.3 bits (102), Expect = 1e-04
 Identities = 22/111 (19%), Positives = 26/111 (23%), Gaps = 2/111 (1%)

Query: 159 AYAPQPPPPMPQGYANPTAYPAPQKDVYPPPPDAHKAALAYPAPGYPPQPQAYPLPGGYP 218
           A AP    P P       A              A   A   PAP      +     G   
Sbjct: 389 AAAPAAAAPAPAAPPAAPAAAPAAAA--AARAVAAAPARRSPAPEALAAARQASARGPGG 446

Query: 219 PPGYAAGAPAPPHPGGYAPVQGPGGMNYQPSPPGSAMGPAGYAYAAPPAAP 269
            P  A    A P         GP  +    +   +   PA     A    P
Sbjct: 447 APAPAPAPAAAPAAAARPAAAGPRPVAAAAAAAPARAAPAAAPAPADDDPP 497

Length = 700

>gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1

 Score = 42.8 bits (101), Expect = 2e-04
 Identities = 31/143 (21%), Positives = 36/143 (25%), Gaps = 16/143 (11%)

Query: 151 QSNDNPGMAYAPQPPPP-MPQGYANPTAYPAPQKDVYPPPPDAHKAALAYPAPGYPPQPQ 209
           Q          PQPP   +PQG     A    Q    P  P  +        P  P    
Sbjct: 162 QLQQRQQAPQLPQPPQQVLPQGMPPRQAAFPQQ--GPPEQPPGY--------PQPPQGHP 211

Query: 210 AYPLPGGYPPPGYAAGAPAP---PHPGGYAPVQGPGGMNYQPSPPGSAMGPAGYAYAAPP 266
               P  + P    A A  P     P    P+Q P         P     P        P
Sbjct: 212 EQVQPQQFLPAPSQAPAQPPLPPQLPQQPPPLQQPQFPGLSQQMPPPPPQPP--QQQQQP 269

Query: 267 AAPQQHSKNSNNSIKKKGMAAGL 289
             PQ      N      G+  G 
Sbjct: 270 PQPQAQPPPQNQPTPHPGLPQGQ 292

Members of this family are necessary for accurate chromosome transmission during cell division. Length = 804

>gnl|CDD|176009 cd04044, C2A_Tricalbin-like, C2 domain first repeat present in Tricalbin-like proteins

 Score = 40.2 bits (95), Expect = 2e-04
 Identities = 30/139 (21%), Positives = 49/139 (35%), Gaps = 27/139 (19%)

Query: 5   ALDITVVSASDLKTAGMFSK-MNVYAVVTIFG--ESQTTSVARDCGVRPTWNHQMRFNID 61
            L +T+ SA  LK + +    ++ Y   +I    E   T V +D    P WN      ++
Sbjct: 3   VLAVTIKSARGLKGSDIIGGTVDPYVTFSISNRRELARTKVKKDTS-NPVWNETKYILVN 61

Query: 62  EAAAMQNNLTI-VYS---IRSTGGCFGNSDLGEVFVPVKEMLLRSNGDDDKPMSYNITTP 117
               +   L + VY     R       +  +G     +  +L         P   N+T  
Sbjct: 62  S---LTEPLNLTVYDFNDKRK------DKLIGTAEFDLSSLL-------QNPEQENLTKN 105

Query: 118 ---GGRAKGVLNVSYKFGP 133
               G+  G LN   +F P
Sbjct: 106 LLRNGKPVGELNYDLRFFP 124

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-II topology. Length = 124

>gnl|CDD|218191 pfam04652, DUF605, Vta1 like

 Score = 42.0 bits (99), Expect = 2e-04
 Identities = 23/120 (19%), Positives = 34/120 (28%), Gaps = 7/120 (5%)

Query: 161 APQPPPPMPQGYANPTAYPAPQKDVYPP-PPDAHKAALAYPAPGYPPQPQAYPLPGGYPP 219
            P P PP+ +   +         + +P    D   A+ + P    P  P     P     
Sbjct: 147 DPNPGPPLDEEDEDADVATTNSDNSFPGEDADPASASPSDPPSSSPGVPSFPSPPEDPSS 206

Query: 220 PGYAAGAPAPPHPGGYAPVQGPGGMNYQPSPPG------SAMGPAGYAYAAPPAAPQQHS 273
           P  ++  PAP       P   P        PPG        +        A P  P   +
Sbjct: 207 PSDSSLPPAPSSFQSDTPPPSPESPTNPSPPPGPAAPPPPPVQQVPPLSTAKPTPPSASA 266

Vta1 (VPS20-associated protein 1) is a positive regulator of Vps4. Vps4 is an ATPase that is required in the multivesicular body (MVB) sorting pathway to dissociate the endosomal sorting complex required for transport (ESCRT). Vta1 promotes correct assembly of Vps4 and stimulates its ATPase activity through its conserved Vta1/SBP1/LIP5 region. Length = 315

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 42.2 bits (99), Expect = 3e-04
 Identities = 40/148 (27%), Positives = 49/148 (33%), Gaps = 31/148 (20%)

Query: 152  SNDNPGMAYAPQPPPPMPQGYANPTAYPAPQKDVYP------------------PPPDAH 193
            +N+         PPP  P+    P     P++                       P    
Sbjct: 2635 ANEPDPHPPPTVPPPERPRDDPAPGRVSRPRRARRLGRAAQASSPPQRPRRRAARPTVGS 2694

Query: 194  KAALAYP-APGYPPQPQAYPLPGGYP-PPGYAAG---------APAPPHPGGYAPVQGPG 242
              +LA P  P   P+P  + L    P PPG AA          APAPP      P   PG
Sbjct: 2695 LTSLADPPPPPPTPEPAPHALVSATPLPPGPAAARQASPALPAAPAPP-AVPAGPAT-PG 2752

Query: 243  GMNYQPSPPGSAMGPAGYAYAAPPAAPQ 270
            G      PP +A  PA    AAP A P 
Sbjct: 2753 GPARPARPPTTAGPPAPAPPAAPAAGPP 2780

Length = 3151

>gnl|CDD|237057 PRK12323, PRK12323, DNA polymerase III subunits gamma and tau; Provisional

 Score = 42.2 bits (99), Expect = 3e-04
 Identities = 24/104 (23%), Positives = 25/104 (24%)

Query: 166 PPMPQGYANPTAYPAPQKDVYPPPPDAHKAALAYPAPGYPPQPQAYPLPGGYPPPGYAAG 225
           P    G A P    A       P   A  AA   PA        A            A  
Sbjct: 365 PGQSGGGAGPATAAAAPVAQPAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPA 424

Query: 226 APAPPHPGGYAPVQGPGGMNYQPSPPGSAMGPAGYAYAAPPAAP 269
             +P      A  Q           P  A   A  A A P AA 
Sbjct: 425 RRSPAPEALAAARQASARGPGGAPAPAPAPAAAPAAAARPAAAG 468

Length = 700

>gnl|CDD|237605 PRK14086, dnaA, chromosomal replication initiation protein; Provisional

 Score = 42.1 bits (99), Expect = 3e-04
 Identities = 28/117 (23%), Positives = 37/117 (31%), Gaps = 23/117 (19%)

Query: 159 AYAPQPPPPMPQGYANPTAYPAPQKDVYPPPPDAHKAALAYPAPGYPPQPQAYPLPGGYP 218
           A  P PPPP  +  + P   P P +  Y            Y  P    +P   P     P
Sbjct: 92  AGEPAPPPPHARRTSEPEL-PRPGRRPYE----------GYGGPRADDRPPGLPRQDQLP 140

Query: 219 --PPGYAAGAPAPPHPGGYAPVQGPGGMNYQPSPPGSAMGPAGYAYAAPPAAPQQHS 273
              P Y A     P PG +       G   Q           G+   AP A+P  ++
Sbjct: 141 TARPAYPAYQQ-RPEPGAWPRAADDYGWQQQ---------RLGFPPRAPYASPASYA 187

Length = 617

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 41.9 bits (99), Expect = 4e-04
 Identities = 34/115 (29%), Positives = 37/115 (32%), Gaps = 2/115 (1%)

Query: 159 AYAPQPPPPMPQGYANPTAYPAPQKDVYPPPPDAHKAALAYPAPGYPPQPQAYPLPGGYP 218
           A       P   G A P A P       P  P    AA A PAP     P A        
Sbjct: 662 ASDGGDGWPAKAGGAAPAAPPPAPAPAAPAAPAG--AAPAQPAPAPAATPPAGQADDPAA 719

Query: 219 PPGYAAGAPAPPHPGGYAPVQGPGGMNYQPSPPGSAMGPAGYAYAAPPAAPQQHS 273
            P  AA   + P P    PV  P   +  P P G+   P      AP AAP    
Sbjct: 720 QPPQAAQGASAPSPAADDPVPLPPEPDDPPDPAGAPAQPPPPPAPAPAAAPAAAP 774

Length = 824

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 41.5 bits (98), Expect = 4e-04
 Identities = 27/104 (25%), Positives = 29/104 (27%), Gaps = 4/104 (3%)

Query: 156 PGMAYAPQPPPPMPQGYANPTAYPAPQKDVYPPPPDAHKAALAYPAPGYPPQPQAYPLPG 215
           P  A       P P     P   PAP      P  +A       P P   P  Q  P P 
Sbjct: 412 PAAAAPAAAAAPAPAAAPQPAPAPAPAPAPPSPAGNAPAGGAPSPPPAAAPSAQPAPAPA 471

Query: 216 GYPPPGYAAGAPAPPHPGGYAPVQGPGGMNYQPSPPGSAMGPAG 259
             P P  A     P  P   A    P      P+ P  A   A 
Sbjct: 472 AAPEPTAAPAPAPPAAPAPAAAPAAPA----APAAPAGADDAAT 511

Length = 824

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 41.8 bits (98), Expect = 4e-04
 Identities = 31/120 (25%), Positives = 36/120 (30%), Gaps = 6/120 (5%)

Query: 156  PGMAYAPQPPPPMPQGYANPTAYPAPQKDVYPPPPDAHKAALAYPAPGYPPQPQAYPLPG 215
            PG A A Q  P +P   A P     P     P  P         PAP  P  P A P   
Sbjct: 2723 PGPAAARQASPALPAAPAPPAVPAGPATPGGPARPARPPTTAGPPAPAPPAAPAAGPPRR 2782

Query: 216  GYPPPGYAA-----GAPAPPHPGGY-APVQGPGGMNYQPSPPGSAMGPAGYAYAAPPAAP 269
               P   +        P+P  P    A V  P       + P   + P   A    P  P
Sbjct: 2783 LTRPAVASLSESRESLPSPWDPADPPAAVLAPAAALPPAASPAGPLPPPTSAQPTAPPPP 2842

Length = 3151

>gnl|CDD|218191 pfam04652, DUF605, Vta1 like

 Score = 41.2 bits (97), Expect = 5e-04
 Identities = 20/110 (18%), Positives = 35/110 (31%)

Query: 132 GPSSSANNNNNNNNNNNANQSNDNPGMAYAPQPPPPMPQGYANPTAYPAPQKDVYPPPPD 191
             ++S N+    + +  +   +D P  +      P  P+  ++P+    P          
Sbjct: 164 ATTNSDNSFPGEDADPASASPSDPPSSSPGVPSFPSPPEDPSSPSDSSLPPAPSSFQSDT 223

Query: 192 AHKAALAYPAPGYPPQPQAYPLPGGYPPPGYAAGAPAPPHPGGYAPVQGP 241
              +  +   P  PP P A P P     P  +   P PP         G 
Sbjct: 224 PPPSPESPTNPSPPPGPAAPPPPPVQQVPPLSTAKPTPPSASATPAPIGG 273

Vta1 (VPS20-associated protein 1) is a positive regulator of Vps4. Vps4 is an ATPase that is required in the multivesicular body (MVB) sorting pathway to dissociate the endosomal sorting complex required for transport (ESCRT). Vta1 promotes correct assembly of Vps4 and stimulates its ATPase activity through its conserved Vta1/SBP1/LIP5 region. Length = 315

>gnl|CDD|235124 PRK03427, PRK03427, cell division protein ZipA; Provisional

 Score = 41.2 bits (97), Expect = 5e-04
 Identities = 31/126 (24%), Positives = 40/126 (31%), Gaps = 5/126 (3%)

Query: 150 NQSNDNPGMAYAPQPPPPMPQGYANPTAYPAPQKDVYPPPPDAHKAALAYPAPGYPPQPQ 209
           ++ N  P  A   +   P PQ    P    A  +     PP+A       P P   P PQ
Sbjct: 69  HRVNHAPANAQEHEAARPSPQHQYQPPYASAQPRQPVQQPPEAQVPPQHAPRPAQ-PAPQ 127

Query: 210 AYPLPGGYPPPGYAAGAPAPPH----PGGYAPVQGPGGMNYQPSPPGSAMGPAGYAYAAP 265
               P   P P      P  P     P        P    +QP+ P +A  P   A  AP
Sbjct: 128 PVQQPAYQPQPEQPLQQPVSPQVAPAPQPVHSAPQPAQQAFQPAEPVAAPQPEPVAEPAP 187

Query: 266 PAAPQQ 271
                +
Sbjct: 188 VMDKPK 193

Length = 333

>gnl|CDD|217392 pfam03153, TFIIA, Transcription factor IIA, alpha/beta subunit

 Score = 40.9 bits (96), Expect = 5e-04
 Identities = 27/119 (22%), Positives = 32/119 (26%), Gaps = 12/119 (10%)

Query: 161 APQPPPPMPQGYANPTAYPAPQKDVYPPPPDAHKAALAYPAPGYPPQPQAYPLPGGYPPP 220
           +PQ PPP+ Q        P  Q     P  D  +      +P   P             P
Sbjct: 52  SPQAPPPVAQLPQPLPQPPPTQALQALPAGDQQQHNTPTGSPAANPPATF-------ALP 104

Query: 221 GYAAGAPAPPHPGGYAPVQGPGGMNYQPSPPGSAMGPAGYAYAAPPAAPQQHSKNSNNS 279
              AG      PG   PVQ P  M  Q         PA            Q    +  S
Sbjct: 105 AGPAGPTIQTEPGQLYPVQVP-VMVTQNPANSPLDQPA----QQRALQQLQQRYGAPAS 158

Transcription initiation factor IIA (TFIIA) is a heterotrimer, the three subunits being known as alpha, beta, and gamma, in order of molecular weight. The N and C-terminal domains of the gamma subunit are represented in pfam02268 and pfam02751, respectively. This family represents the precursor that yields both the alpha and beta subunits. The TFIIA heterotrimer is an essential general transcription initiation factor for the expression of genes transcribed by RNA polymerase II. Together with TFIID, TFIIA binds to the promoter region; this is the first step in the formation of a pre-initiation complex (PIC). Binding of the rest of the transcription machinery follows this step. After initiation, the PIC does not completely dissociate from the promoter. Some components, including TFIIA, remain attached and re-initiate a subsequent round of transcription. Length = 332

>gnl|CDD|237864 PRK14950, PRK14950, DNA polymerase III subunits gamma and tau; Provisional

 Score = 41.3 bits (97), Expect = 5e-04
 Identities = 26/109 (23%), Positives = 32/109 (29%), Gaps = 15/109 (13%)

Query: 165 PPPMPQGYANPTAYPAPQKDVYPPPPDAHKAALAYPAPGYPPQPQAYPLPGGYPPPGYAA 224
           P P PQ      A P+P +   P P    KAA A   P   P  +    P   P P    
Sbjct: 362 PVPAPQPAKPTAAAPSPVRPT-PAPSTRPKAAAAANIPPKEPVRETATPPPVPPRP---- 416

Query: 225 GAPAPPHPGGYAPVQGPGGMNYQPSPPGSAMGPAGYAYAAPPAAPQQHS 273
            AP  PH    AP               +        Y  P    ++  
Sbjct: 417 VAPPVPHTPESAP----------KLTRAAIPVDEKPKYTPPAPPKEEEK 455

Length = 585

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 41.5 bits (97), Expect = 6e-04
 Identities = 35/133 (26%), Positives = 42/133 (31%), Gaps = 14/133 (10%)

Query: 151  QSNDNPGMAYAPQPPPPMPQGYANPTAYPAPQKDVYPPPPDA---------HKAALAYPA 201
              +  P   +AP PPPP P   AN      P     P  P            + A     
Sbjct: 2613 PPSPLPPDTHAPDPPPPSPSPAANEPDPHPPPTVPPPERPRDDPAPGRVSRPRRARRLGR 2672

Query: 202  PGYPPQPQAYPLPGGYPPPGYAAGAPAPPHPGGYAPVQGP-GGMNYQPSPPGSAMG---- 256
                  P   P      P   +  + A P P    P   P   ++  P PPG A      
Sbjct: 2673 AAQASSPPQRPRRRAARPTVGSLTSLADPPPPPPTPEPAPHALVSATPLPPGPAAARQAS 2732

Query: 257  PAGYAYAAPPAAP 269
            PA  A  APPA P
Sbjct: 2733 PALPAAPAPPAVP 2745

Length = 3151

>gnl|CDD|237865 PRK14951, PRK14951, DNA polymerase III subunits gamma and tau; Provisional

 Score = 41.2 bits (97), Expect = 7e-04
 Identities = 30/125 (24%), Positives = 33/125 (26%), Gaps = 15/125 (12%)

Query: 156 PGMAYAPQPPPPMPQGYANPTAYPAPQKDVYPPPPDAHKAALAYPAPGY---PPQPQAYP 212
           P  A     P         P    A      P    A   A A         P  P A  
Sbjct: 366 PAAAAEAAAPAEK----KTPARPEAAAPAAAPVAQAAAAPAPAAAPAAAASAPAAPPAAA 421

Query: 213 LPGGYPPPGYAAGAPAPPHPGGYAPVQGPGGMNYQPSPPGSAM------GPAGYAYAAPP 266
            P     P  AA A AP      A V        Q +P   A+       PA  + A  P
Sbjct: 422 PPAPVAAPAAAAPAAAPAA--APAAVALAPAPPAQAAPETVAIPVRVAPEPAVASAAPAP 479

Query: 267 AAPQQ 271
           AA   
Sbjct: 480 AAAPA 484

Length = 618

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 41.5 bits (97), Expect = 7e-04
 Identities = 32/110 (29%), Positives = 40/110 (36%), Gaps = 12/110 (10%)

Query: 162  PQPPPPMPQGYANPTAYPAPQKDVYPPPPDAHKAALAYP-APGYPPQPQAYPLPGGYPPP 220
            P PP P P  +A  +A P P     P P  A +A+ A P AP  P  P     PGG   P
Sbjct: 2703 PPPPTPEPAPHALVSATPLP-----PGPAAARQASPALPAAPAPPAVPAGPATPGGPARP 2757

Query: 221  GYAAGAPAPPHPGG-YAPVQGPGGMNYQPSPPGSAMGPAGYAYAAPPAAP 269
                    PP P    AP  GP            A+     +  + P+  
Sbjct: 2758 ARPPTTAGPPAPAPPAAPAAGP-----PRRLTRPAVASLSESRESLPSPW 2802

Length = 3151

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 41.5 bits (97), Expect = 7e-04
 Identities = 31/120 (25%), Positives = 39/120 (32%), Gaps = 7/120 (5%)

Query: 156  PGMAYAPQPP-----PPMPQGYANPTAYPAPQKDVYPPPPDAHKAALAYPAPGYPPQPQA 210
                 AP PP      P  +      A  +  ++  P P D      A  AP     P A
Sbjct: 2763 TAGPPAPAPPAAPAAGPPRRLTRPAVASLSESRESLPSPWDPADPPAAVLAPAAALPPAA 2822

Query: 211  YPLPGGYPPPGYAAGAPAPPHPGGYAPVQGPGGMNYQPSPPGSAMGPAGYAYAAPPAAPQ 270
             P     PP   +A   APP P G  P   P G +  P        P+    A P A  +
Sbjct: 2823 SPAGPLPPPT--SAQPTAPPPPPGPPPPSLPLGGSVAPGGDVRRRPPSRSPAAKPAAPAR 2880

Length = 3151

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 41.1 bits (96), Expect = 7e-04
 Identities = 30/127 (23%), Positives = 38/127 (29%), Gaps = 7/127 (5%)

Query: 162  PQPPPPMPQGYANPTAYPAPQKDVYPPPPDAHKAALAYPAPGYPPQPQAYPLPGGYPPPG 221
            P P PP     A   + P P+    P  P     A     P  PPQ      P       
Sbjct: 2552 PPPLPPAAPPAAPDRSVPPPRPAPRPSEPAVTSRA---RRPDAPPQSARPRAPVDDRGDP 2608

Query: 222  YAAGAPAPPHPGGYAPVQGPGGMNYQPSPPGSAMGPAGYAYAAPPAAPQQHSKNSNNSIK 281
                 P+P  P  +AP   P      PSP  +   P       PP  P+        S  
Sbjct: 2609 RGPAPPSPLPPDTHAPDPPPPS----PSPAANEPDPHPPPTVPPPERPRDDPAPGRVSRP 2664

Query: 282  KKGMAAG 288
            ++    G
Sbjct: 2665 RRARRLG 2671

Length = 3151

>gnl|CDD|236669 PRK10263, PRK10263, DNA translocase FtsK; Provisional

 Score = 41.2 bits (96), Expect = 7e-04
 Identities = 27/123 (21%), Positives = 32/123 (26%), Gaps = 13/123 (10%)

Query: 156 PGMAYAPQPPPPMPQGYANPTAYPAPQKDVYPPPPDAHKAALAYPAPGYPPQPQAYPLPG 215
           P +A AP+  P   Q       Y  P +    P    +  A   PA       Q Y  P 
Sbjct: 371 PVIAPAPEGYPQQSQYAQPAVQYNEPLQQPVQPQQPYYAPAAEQPAQ------QPYYAPA 424

Query: 216 GYPPPGYAAGAPAPPHPGGYAPVQG-PGGMNYQPSP------PGSAMGPAGYAYAAPPAA 268
              P      APAP  P      Q       + P                   Y  P   
Sbjct: 425 PEQPAQQPYYAPAPEQPVAGNAWQAEEQQSTFAPQSTYQTEQTYQQPAAQEPLYQQPQPV 484

Query: 269 PQQ 271
            QQ
Sbjct: 485 EQQ 487

Length = 1355

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 40.7 bits (96), Expect = 0.001
 Identities = 29/134 (21%), Positives = 34/134 (25%), Gaps = 11/134 (8%)

Query: 149 ANQSNDNPGMAYAPQPPPPMPQGYANPTAYPAPQKDVYPPPPDAHKAALAYPAPGYPP-- 206
           A  +      + AP P    P+ +    A P         P  A  AA A P P   P  
Sbjct: 630 AGAAAAPAEASAAPAPGVAAPEHHPKHVAVPDASDGGDGWPAKAGGAAPAAPPPAPAPAA 689

Query: 207 QPQAYPLPGGYPPPGYAAGAPAPPHPGGYAPVQGPG---------GMNYQPSPPGSAMGP 257
                      P P  AA  PA       A                 +  P PP     P
Sbjct: 690 PAAPAGAAPAQPAPAPAATPPAGQADDPAAQPPQAAQGASAPSPAADDPVPLPPEPDDPP 749

Query: 258 AGYAYAAPPAAPQQ 271
                 A P  P  
Sbjct: 750 DPAGAPAQPPPPPA 763

Length = 824

>gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1

 Score = 40.1 bits (94), Expect = 0.001
 Identities = 25/127 (19%), Positives = 26/127 (20%), Gaps = 4/127 (3%)

Query: 149 ANQSNDNPGMAYAPQPPPPMP--QGYANPTAYPAPQKDVYPPPPDAHKAALAYPAPGYPP 206
             Q             P  MP  Q        P        PP    +          P 
Sbjct: 165 QRQQAPQLPQPPQQVLPQGMPPRQAAFPQQGPPEQPPGYPQPPQGHPEQVQPQQFLPAPS 224

Query: 207 Q-PQAYPLPGGYP-PPGYAAGAPAPPHPGGYAPVQGPGGMNYQPSPPGSAMGPAGYAYAA 264
           Q P   PLP   P  P        P       P         Q  P   A  P       
Sbjct: 225 QAPAQPPLPPQLPQQPPPLQQPQFPGLSQQMPPPPPQPPQQQQQPPQPQAQPPPQNQPTP 284

Query: 265 PPAAPQQ 271
            P  PQ 
Sbjct: 285 HPGLPQG 291

Members of this family are necessary for accurate chromosome transmission during cell division. Length = 804

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 40.7 bits (95), Expect = 0.001
 Identities = 31/123 (25%), Positives = 35/123 (28%), Gaps = 14/123 (11%)

Query: 161  APQPPPPMPQGYANPTAYPAPQKDVYPPPPD----------AHKAALAYPAPGYPPQPQA 210
            AP PPP  P          AP  DV   PP           A         P      ++
Sbjct: 2838 APPPPPGPPPPSLPLGGSVAPGGDVRRRPPSRSPAAKPAAPARPPVRRLARPAVSRSTES 2897

Query: 211  YPLPGGYPPPGYAAGAPAPPHPGGYAPVQGPGGMNYQPSPPGSAMGPAGYAYAAPPAAPQ 270
            + LP   P       AP PP P    P         QP PP         A    PA   
Sbjct: 2898 FALPPDQPERPPQPQAPPPPQPQPQPPPPP----QPQPPPPPPPRPQPPLAPTTDPAGAG 2953

Query: 271  QHS 273
            + S
Sbjct: 2954 EPS 2956

Length = 3151

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 40.7 bits (95), Expect = 0.001
 Identities = 32/119 (26%), Positives = 34/119 (28%), Gaps = 3/119 (2%)

Query: 156  PGMAYAPQPPPPMPQGYANPTAYPAPQKDVYPPPPDAHKAALAYPA-PGYPPQPQAYPLP 214
            P     P P   +      P    A Q     P   A  A  A PA PG P +P   P  
Sbjct: 2704 PPPTPEPAPHALVSATPLPPGPAAARQASPALPAAPAPPAVPAGPATPGGPARPARPPTT 2763

Query: 215  GGYPPPGYAAGAPAPPHPGGYAPVQGPG--GMNYQPSPPGSAMGPAGYAYAAPPAAPQQ 271
             G P P   A   A P      P            PSP   A  PA     A    P  
Sbjct: 2764 AGPPAPAPPAAPAAGPPRRLTRPAVASLSESRESLPSPWDPADPPAAVLAPAAALPPAA 2822

Length = 3151

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 40.7 bits (95), Expect = 0.001
 Identities = 19/77 (24%), Positives = 23/77 (29%)

Query: 156  PGMAYAPQPPPPMPQGYANPTAYPAPQKDVYPPPPDAHKAALAYPAPGYPPQPQAYPLPG 215
            P     PQP P  P         P P +   P  P    A    P+   P       +PG
Sbjct: 2911 PQAPPPPQPQPQPPPPPQPQPPPPPPPRPQPPLAPTTDPAGAGEPSGAVPQPWLGALVPG 2970

Query: 216  GYPPPGYAAGAPAPPHP 232
                P +    PAP   
Sbjct: 2971 RVAVPRFRVPQPAPSRE 2987

Length = 3151

>gnl|CDD|237605 PRK14086, dnaA, chromosomal replication initiation protein; Provisional

 Score = 39.8 bits (93), Expect = 0.001
 Identities = 22/114 (19%), Positives = 28/114 (24%), Gaps = 7/114 (6%)

Query: 161 APQPPPP-------MPQGYANPTAYPAPQKDVYPPPPDAHKAALAYPAPGYPPQPQAYPL 213
              P             G+     Y +P         D        P      +   +P 
Sbjct: 156 GAWPRAADDYGWQQQRLGFPPRAPYASPASYAPEQERDREPYDAGRPEYDQRRRDYDHPR 215

Query: 214 PGGYPPPGYAAGAPAPPHPGGYAPVQGPGGMNYQPSPPGSAMGPAGYAYAAPPA 267
           P    P       P PP   G+    GPG      +P       A    AA PA
Sbjct: 216 PDWDRPRRDRTDRPEPPPGAGHVHRGGPGPPERDDAPVVPIRPSAPGPLAAQPA 269

Length = 617

>gnl|CDD|130689 TIGR01628, PABP-1234, polyadenylate binding protein, human types 1, 2, 3, 4 family

 Score = 40.2 bits (94), Expect = 0.001
 Identities = 18/106 (16%), Positives = 22/106 (20%), Gaps = 5/106 (4%)

Query: 150 NQSNDNPGMAYAPQPPPPMPQGYANPTAYPAPQKDVYPPPPDAHKAALAYPAPGYP---P 206
           +Q               PM      P  Y    +  +   P         P P  P    
Sbjct: 373 DQFMQLQPRMRQLPMGSPMGGAMGQPPYYGQGPQQQFNGQPLGWPRMSMMPTPMGPGGPL 432

Query: 207 QPQAYPLPGGYPPPGYAAGAPAPPHPGGYAPVQGPGGMNYQPSPPG 252
           +P           P   A   A   P    PV  P      P    
Sbjct: 433 RPNGLAPMNAVRAPSRNAQNAAQKPPMQ--PVMYPPNYQSLPLSQD 476

These eukaryotic proteins recognize the poly-A of mRNA and consists of four tandem RNA recognition domains at the N-terminus (rrm: pfam00076) followed by a PABP-specific domain (pfam00658) at the C-terminus. The protein is involved in the transport of mRNA's from the nucleus to the cytoplasm. There are four paralogs in Homo sapiens which are expressed in testis (GP:11610605_PABP3 ), platelets (SP:Q13310_PABP4 ), broadly expressed (SP:P11940_PABP1) and of unknown tissue range (SP:Q15097_PABP2). Length = 562

>gnl|CDD|221818 pfam12868, DUF3824, Domain of unknwon function (DUF3824)

 Score = 37.9 bits (88), Expect = 0.001
 Identities = 26/93 (27%), Positives = 32/93 (34%), Gaps = 15/93 (16%)

Query: 176 TAYPAPQKDVYPPPPDAHKAALAYPAPGYPPQPQAYPLPGGYPPPGYAAGAPAPPHPGGY 235
            AY    ++ Y P P        YP       P+ YP    +PPP  +   P P    GY
Sbjct: 44  DAYSDSYEEPYDPTP--------YPPSPPVSDPRYYPNSNYFPPPPGSTPVPPPGPQPGY 95

Query: 236 APVQGPGGMNYQPSPPGSAMGPAGYAYAAPPAA 268
            P          P PPG+   P  Y Y   P  
Sbjct: 96  NP-------ADYPPPPGAVPPPQNYPYPPGPGQ 121

This is a repeating domain found in fungal proteins. It is proline-rich, and the function is not known. Length = 135

>gnl|CDD|237864 PRK14950, PRK14950, DNA polymerase III subunits gamma and tau; Provisional

 Score = 39.4 bits (92), Expect = 0.002
 Identities = 15/80 (18%), Positives = 17/80 (21%), Gaps = 9/80 (11%)

Query: 154 DNPGMAYAPQPPPPMPQGYANPTAYPAPQKDVYPPPPDAHKAALAYPAPGYPPQPQAYPL 213
             P  +  P+           P    A    V PP P A         P       A  L
Sbjct: 381 PTPAPSTRPKAAAAANIPPKEPVRETATPPPV-PPRPVA--------PPVPHTPESAPKL 431

Query: 214 PGGYPPPGYAAGAPAPPHPG 233
                P         P  P 
Sbjct: 432 TRAAIPVDEKPKYTPPAPPK 451

Length = 585

>gnl|CDD|236669 PRK10263, PRK10263, DNA translocase FtsK; Provisional

 Score = 40.1 bits (93), Expect = 0.002
 Identities = 33/129 (25%), Positives = 41/129 (31%), Gaps = 18/129 (13%)

Query: 156 PGMAYAPQPPPPMPQGYANPTAYPAPQKDVYPPPPDAHKAALAYPAP---GYPPQPQAYP 212
           P +A+ P P P   +    P   PAP+   YP      + A+ Y  P      PQ   Y 
Sbjct: 356 PTVAWQPVPGPQTGE----PVIAPAPEG--YPQQSQYAQPAVQYNEPLQQPVQPQQPYYA 409

Query: 213 LPGGYPP--PGYAAGAPAPPHPGGYAP--VQGPGGMNYQPSPPGSAMGPAGY-----AYA 263
                P   P YA     P     YAP   Q   G  +Q     S   P         Y 
Sbjct: 410 PAAEQPAQQPYYAPAPEQPAQQPYYAPAPEQPVAGNAWQAEEQQSTFAPQSTYQTEQTYQ 469

Query: 264 APPAAPQQH 272
            P A    +
Sbjct: 470 QPAAQEPLY 478

Length = 1355

>gnl|CDD|219339 pfam07223, DUF1421, Protein of unknown function (DUF1421)

 Score = 39.2 bits (91), Expect = 0.002
 Identities = 40/144 (27%), Positives = 53/144 (36%), Gaps = 18/144 (12%)

Query: 159 AYAPQPPPPMPQGYANPTAYPAPQKDVYPPPPDAHKAALAYPAPGYPPQPQAYPL----- 213
              P P  P  Q Y +P   P  Q++  P    A + +  YP    P QPQ+YP      
Sbjct: 140 QPQPPPQVPQQQQYQSPPQQPQYQQNPPPQAQSAPQVSGLYP-EESPYQPQSYPPNEPLP 198

Query: 214 --------PGGYPPPGYAAGAPAP-PHPGGYAPVQGPGGMNYQPSPPGSAMGPAGYAYAA 264
                     G PP     G P P P+  G    +   G      PP S  G  GY Y+ 
Sbjct: 199 SSMAMQPPYSGAPPSQQFYGPPQPSPYMYGGPGGRPNSGFPSGQQPPPS-QGQEGYGYSG 257

Query: 265 PPAAPQQHSKNSNNSIKKKGMAAG 288
           PP  P + +  S  S   +G +  
Sbjct: 258 PP--PSKGNHGSVASYAPQGSSQS 279

This family represents a conserved region approximately 350 residues long within a number of plant proteins of unknown function. Length = 357

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 39.2 bits (91), Expect = 0.003
 Identities = 31/113 (27%), Positives = 35/113 (30%), Gaps = 16/113 (14%)

Query: 164  PPPPMPQGYANPTAYPAPQKDVYPPPPDAHKAALAYPAPGYPPQPQAYPLPGGYPPPGYA 223
            PPPP P     P   P       P PP    A  A PA   P  P    +P G   PG  
Sbjct: 2701 PPPPPPT----PEPAPHALVSATPLPPGPAAARQASPAL--PAAPAPPAVPAGPATPGGP 2754

Query: 224  AGAPAPPHPGGYAPVQGPGGMNYQPSPPGSAMGPAGYAYAAPPAAPQQHSKNS 276
            A    PP   G             P+PP +           P  A    S+ S
Sbjct: 2755 ARPARPPTTAGPP----------APAPPAAPAAGPPRRLTRPAVASLSESRES 2797

Length = 3151

>gnl|CDD|221818 pfam12868, DUF3824, Domain of unknwon function (DUF3824)

 Score = 37.2 bits (86), Expect = 0.003
 Identities = 27/78 (34%), Positives = 31/78 (39%), Gaps = 10/78 (12%)

Query: 160 YAPQPPPPMPQGYANPTAYPAPQKDVYPPPPDAHKAALAYPAPGYPPQPQAYPLPGGYPP 219
           Y P PP   P+ Y        P  + +PPPP +       P PGY   P  YP P G  P
Sbjct: 59  YPPSPPVSDPRYY--------PNSNYFPPPPGSTPVPPPGPQPGY--NPADYPPPPGAVP 108

Query: 220 PGYAAGAPAPPHPGGYAP 237
           P      P  P    YAP
Sbjct: 109 PPQNYPYPPGPGQDPYAP 126

This is a repeating domain found in fungal proteins. It is proline-rich, and the function is not known. Length = 135

>gnl|CDD|218621 pfam05518, Totivirus_coat, Totivirus coat protein

 Score = 39.4 bits (92), Expect = 0.003
 Identities = 32/117 (27%), Positives = 35/117 (29%), Gaps = 11/117 (9%)

Query: 152 SNDNPGMAYAPQPPPPMPQGYANPTAYPAPQKDVYPPPPDAHKAALAYPAPGYPPQPQAY 211
             +  G A  P  P P+P G    TA P+      P  P AH AAL   AP         
Sbjct: 647 DYNRGGEAGGPGVPGPVPVGMPAHTARPSRVARGDPVRPTAHHAAL--RAP--------- 695

Query: 212 PLPGGYPPPGYAAGAPAPPHPGGYAPVQGPGGMNYQPSPPGSAMGPAGYAYAAPPAA 268
             P    PPG   G P PP     A     G              P G   A     
Sbjct: 696 QAPRPGGPPGGGGGLPPPPDLPAAAGPAPCGSSLIASPTAPPEPEPPGAEQADGAEN 752

Length = 753

>gnl|CDD|219358 pfam07271, Cytadhesin_P30, Cytadhesin P30/P32

 Score = 38.5 bits (89), Expect = 0.003
 Identities = 30/116 (25%), Positives = 36/116 (31%), Gaps = 15/116 (12%)

Query: 143 NNNNNNANQSNDNPGMAYAPQPPPPMPQGYANPTAYPAPQKDVYPP-----PPDAHKAAL 197
           N  NN   Q     G     +  P        P     P  +  PP     PP+  +   
Sbjct: 148 NVANNPQPQVQPQFGPNPQQRINPQRFGFPMQPNMGMRPGFNQMPPHMPGMPPNQMR--- 204

Query: 198 AYPAPGYPPQPQAYPLPGGYPPPGYAAGAPAP---PHPGGYAPVQGPGGMNYQPSP 250
               PG+ P P   P PG    P        P   P PGG+     P G N Q  P
Sbjct: 205 ----PGFNPMPGMPPRPGFNQNPNMMPNMNRPGFRPQPGGFNHPGTPMGPNMQQRP 256

This family consists of several Mycoplasma species specific Cytadhesin P32 and P30 proteins. P30 has been found to be membrane associated and localised on the tip organelle. It is thought that it is important in cytadherence and virulence. Length = 279

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 38.8 bits (90), Expect = 0.004
 Identities = 26/105 (24%), Positives = 30/105 (28%), Gaps = 4/105 (3%)

Query: 158  MAYAPQPPPPMPQGYANPTAYPAPQKDVYPPP---PDAHKAALAYPAPGYPPQPQAYPLP 214
            +A                     PQ    PPP   P         P P  PP+PQ    P
Sbjct: 2886 LARPAVSRSTESFALPPDQPERPPQPQAPPPPQPQPQPPPPPQPQPPPPPPPRPQPPLAP 2945

Query: 215  GGYPPP-GYAAGAPAPPHPGGYAPVQGPGGMNYQPSPPGSAMGPA 258
               P   G  +GA   P  G   P +        P P  S   PA
Sbjct: 2946 TTDPAGAGEPSGAVPQPWLGALVPGRVAVPRFRVPQPAPSREAPA 2990

Length = 3151

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 38.8 bits (90), Expect = 0.004
 Identities = 25/116 (21%), Positives = 32/116 (27%), Gaps = 7/116 (6%)

Query: 161  APQPPPPMPQGYANPTAYPAPQKDVYP--PPPDAHKAALAYPAPGYPPQPQAYPLPGGYP 218
            A    PP   G   P    AP          P     + +  +   P  P   P     P
Sbjct: 2755 ARPARPPTTAGPPAPAPPAAPAAGPPRRLTRPAVASLSESRESLPSPWDPADPPAAVLAP 2814

Query: 219  PPGY-AAGAPAPPHPGGYAPVQGPGGMNYQPSPPGSAMG----PAGYAYAAPPAAP 269
                  A +PA P P   +           P PP   +G    P G     PP+  
Sbjct: 2815 AAALPPAASPAGPLPPPTSAQPTAPPPPPGPPPPSLPLGGSVAPGGDVRRRPPSRS 2870

Length = 3151

>gnl|CDD|176011 cd04046, C2_Calpain, C2 domain present in Calpain proteins

 Score = 36.5 bits (85), Expect = 0.004
 Identities = 13/51 (25%), Positives = 22/51 (43%), Gaps = 1/51 (1%)

Query: 8  ITVVSASDLKTAGMFSKMNVYAVVTIFGESQTTSVARDCGVRPTWNHQMRF 58
          + V SA  L         + Y ++   GES  + V +D  + P ++ Q  F
Sbjct: 7  VHVHSAEGLSKQDSGGGADPYVIIKCEGESVRSPVQKDT-LSPEFDTQAIF 56

A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 126

>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed

 Score = 38.7 bits (91), Expect = 0.004
 Identities = 27/116 (23%), Positives = 33/116 (28%), Gaps = 17/116 (14%)

Query: 184 DVYPPPPDAHKAALAYPAPGYPPQPQAYPLPGGYPPPGYAAGAPAPPHPGGYAPVQGPGG 243
           D  P    A  AA A  A        A        P      A AP  P           
Sbjct: 35  DYGPGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAP----------- 83

Query: 244 MNYQPSP-PGSAMGPAGYAYAAPPAAPQQHSKNSNNSIKK-KGMAAGLGLGMGAGL 297
               P P   +A   A  A  A  AA    +    + +   +G AA +   M A L
Sbjct: 84  ----PKPAAAAAAAAAPAAPPAAAAAAAPAAAAVEDEVTPLRGAAAAVAKNMDASL 135

Length = 1228

>gnl|CDD|185594 PTZ00395, PTZ00395, Sec24-related protein; Provisional

 Score = 38.9 bits (90), Expect = 0.004
 Identities = 45/180 (25%), Positives = 59/180 (32%), Gaps = 30/180 (16%)

Query: 132 GPSSSANNNNNNNNNNNANQSNDNPGMAYAPQPPPPMPQ-----------GYANPTAYPA 180
           G S+  N+N   NN  N+N   +NP  +  P   PP               Y+N     A
Sbjct: 413 GYSNPGNSNPGYNNAPNSNTPYNNPPNSNTPYSNPPNSNPPYSNLPYSNTPYSNAPLSNA 472

Query: 181 PQKDVYPPPPDAHKA----ALAYPAPGYPP--QPQAYPLPGGYPPPGYAAGAPAPPHPGG 234
           P           H A    A   PA   P   QP A    G     G + G P    P G
Sbjct: 473 PPSSAKDHHSAYHAAYQHRAANQPAANLPTANQPAANNFHGAA---GNSVGNPFASRPFG 529

Query: 235 YAPVQG-------PGGMNYQPSPPGSAMGPAGYAYAAPPAAPQQHSKNSN---NSIKKKG 284
            AP  G       P G+  +   P        Y  +   +     S+NS+   N +  KG
Sbjct: 530 SAPYGGNAATTADPNGIAKREDHPEGGTNRQKYEQSDEESVESSSSENSSENENEVTDKG 589

Length = 1560

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	336
cd04016	121	C2_Tollip C2 domain present in Toll-interacting pr	99.92
cd08681	118	C2_fungal_Inn1p-like C2 domain found in fungal Ing	99.88
cd04019	150	C2C_MCTP_PRT_plant C2 domain third repeat found in	99.87
cd04022	127	C2A_MCTP_PRT_plant C2 domain first repeat found in	99.87
cd08682	126	C2_Rab11-FIP_classI C2 domain found in Rab11-famil	99.87
cd04051	125	C2_SRC2_like C2 domain present in Soybean genes Re	99.86
cd04042	121	C2A_MCTP_PRT C2 domain first repeat found in Multi	99.86
cd08375	136	C2_Intersectin C2 domain present in Intersectin. A	99.85
cd04033	133	C2_NEDD4_NEDD4L C2 domain present in the Human neu	99.84
cd08377	119	C2C_MCTP_PRT C2 domain third repeat found in Multi	99.84
cd08378	121	C2B_MCTP_PRT_plant C2 domain second repeat found i	99.84
cd08379	126	C2D_MCTP_PRT_plant C2 domain fourth repeat found i	99.84
cd08401	121	C2A_RasA2_RasA3 C2 domain first repeat present in	99.84
cd04046	126	C2_Calpain C2 domain present in Calpain proteins.	99.84
cd04024	128	C2A_Synaptotagmin-like C2 domain first repeat pres	99.83
cd08678	126	C2_C21orf25-like C2 domain found in the Human chro	99.83
cd08376	116	C2B_MCTP_PRT C2 domain second repeat found in Mult	99.83
cd04044	124	C2A_Tricalbin-like C2 domain first repeat present	99.83
cd04025	123	C2B_RasA1_RasA4 C2 domain second repeat present in	99.83
KOG1030	168	consensus Predicted Ca2+-dependent phospholipid-bi	99.82
cd04054	121	C2A_Rasal1_RasA4 C2 domain first repeat present in	99.82
cd08677	118	C2A_Synaptotagmin-13 C2 domain. Synaptotagmin is a	99.82
cd04036	119	C2_cPLA2 C2 domain present in cytosolic PhosphoLip	99.81
cd08400	126	C2_Ras_p21A1 C2 domain present in RAS p21 protein	99.81
cd04017	135	C2D_Ferlin C2 domain fourth repeat in Ferlin. Ferl	99.81
cd08391	121	C2A_C2C_Synaptotagmin_like C2 domain first and thi	99.81
cd04014	132	C2_PKC_epsilon C2 domain in Protein Kinase C (PKC)	99.81
cd04015	158	C2_plant_PLD C2 domain present in plant phospholip	99.81
cd08395	120	C2C_Munc13 C2 domain third repeat in Munc13 (mamma	99.8
cd08382	123	C2_Smurf-like C2 domain present in Smad ubiquitina	99.8
cd08381	122	C2B_PI3K_class_II C2 domain second repeat present	99.8
cd04027	127	C2B_Munc13 C2 domain second repeat in Munc13 (mamm	99.79
cd04010	148	C2B_RasA3 C2 domain second repeat present in RAS p	99.79
cd08373	127	C2A_Ferlin C2 domain first repeat in Ferlin. Ferli	99.79
cd08392	128	C2A_SLP-3 C2 domain first repeat present in Synapt	99.79
cd04039	108	C2_PSD C2 domain present in Phosphatidylserine dec	99.79
cd04049	124	C2_putative_Elicitor-responsive_gene C2 domain pre	99.78
cd04041	111	C2A_fungal C2 domain first repeat; fungal group. C	99.77
cd04021	125	C2_E3_ubiquitin_ligase C2 domain present in E3 ubi	99.77
cd08394	127	C2A_Munc13 C2 domain first repeat in Munc13 (mamma	99.77
cd04028	146	C2B_RIM1alpha C2 domain second repeat contained in	99.77
cd08691	137	C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-li	99.76
cd04050	105	C2B_Synaptotagmin-like C2 domain second repeat pre	99.76
cd08393	125	C2A_SLP-1_2 C2 domain first repeat present in Syna	99.76
cd04043	126	C2_Munc13_fungal C2 domain in Munc13 (mammalian un	99.76
cd04011	111	C2B_Ferlin C2 domain second repeat in Ferlin. Ferl	99.76
cd04029	125	C2A_SLP-4_5 C2 domain first repeat present in Syna	99.76
cd08388	128	C2A_Synaptotagmin-4-11 C2A domain first repeat pre	99.75
cd08688	110	C2_KIAA0528-like C2 domain found in the Human KIAA	99.75
cd08387	124	C2A_Synaptotagmin-8 C2A domain first repeat presen	99.75
cd08685	119	C2_RGS-like C2 domain of the Regulator Of G-Protei	99.75
cd08385	124	C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repe	99.75
cd08680	124	C2_Kibra C2 domain found in Human protein Kibra. K	99.75
cd04045	120	C2C_Tricalbin-like C2 domain third repeat present	99.74
cd04040	115	C2D_Tricalbin-like C2 domain fourth repeat present	99.74
cd00275	128	C2_PLC_like C2 domain present in Phosphoinositide-	99.74
cd04009	133	C2B_Munc13-like C2 domain second repeat in Munc13	99.74
cd04031	125	C2A_RIM1alpha C2 domain first repeat contained in	99.74
cd04030	127	C2C_KIAA1228 C2 domain third repeat present in unc	99.73
cd04018	151	C2C_Ferlin C2 domain third repeat in Ferlin. Ferli	99.73
cd08386	125	C2A_Synaptotagmin-7 C2A domain first repeat presen	99.73
cd08521	123	C2A_SLP C2 domain first repeat present in Synaptot	99.72
cd04032	127	C2_Perforin C2 domain of Perforin. Perforin contai	99.72
cd08690	155	C2_Freud-1 C2 domain found in 5' repressor element	99.72
cd04038	145	C2_ArfGAP C2 domain present in Arf GTPase Activati	99.71
cd08389	124	C2A_Synaptotagmin-14_16 C2A domain first repeat pr	99.71
cd04020	162	C2B_SLP_1-2-3-4 C2 domain second repeat present in	99.71
cd08390	123	C2A_Synaptotagmin-15-17 C2A domain first repeat pr	99.7
cd04037	124	C2E_Ferlin C2 domain fifth repeat in Ferlin. Ferli	99.7
cd08407	138	C2B_Synaptotagmin-13 C2 domain second repeat prese	99.7
cd08384	133	C2B_Rabphilin_Doc2 C2 domain second repeat present	99.7
cd08406	136	C2B_Synaptotagmin-12 C2 domain second repeat prese	99.7
cd08383	117	C2A_RasGAP C2 domain (first repeat) of Ras GTPase	99.69
cd08404	136	C2B_Synaptotagmin-4 C2 domain second repeat presen	99.69
cd08408	138	C2B_Synaptotagmin-14_16 C2 domain second repeat pr	99.67
cd08675	137	C2B_RasGAP C2 domain second repeat of Ras GTPase a	99.67
cd04052	111	C2B_Tricalbin-like C2 domain second repeat present	99.67
cd04013	146	C2_SynGAP_like C2 domain present in Ras GTPase act	99.66
cd08676	153	C2A_Munc13-like C2 domain first repeat in Munc13 (	99.66
cd08402	136	C2B_Synaptotagmin-1 C2 domain second repeat presen	99.66
cd04026	131	C2_PKC_alpha_gamma C2 domain in Protein Kinase C (	99.66
cd08410	135	C2B_Synaptotagmin-17 C2 domain second repeat prese	99.66
KOG0696	683	consensus Serine/threonine protein kinase [Signal	99.66
cd04048	120	C2A_Copine C2 domain first repeat in Copine. There	99.66
cd08405	136	C2B_Synaptotagmin-7 C2 domain second repeat presen	99.66
cd08403	134	C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repe	99.66
cd08692	135	C2B_Tac2-N C2 domain second repeat found in Tac2-N	99.66
PLN03008	868	Phospholipase D delta	99.65
cd04035	123	C2A_Rabphilin_Doc2 C2 domain first repeat present	99.64
cd08409	137	C2B_Synaptotagmin-15 C2 domain second repeat prese	99.64
cd04047	110	C2B_Copine C2 domain second repeat in Copine. Ther	99.63
cd00276	134	C2B_Synaptotagmin C2 domain second repeat present	99.63
KOG1028	421	consensus Ca2+-dependent phospholipid-binding prot	99.62
cd08686	118	C2_ABR C2 domain in the Active BCR (Breakpoint clu	99.62
PLN03200	2102	cellulose synthase-interactive protein; Provisiona	99.57
KOG1011	1283	consensus Neurotransmitter release regulator, UNC-	99.56
PF00168	85	C2: C2 domain; InterPro: IPR000008 The C2 domain i	99.55
KOG2059	800	consensus Ras GTPase-activating protein [Signal tr	99.45
PLN02223	537	phosphoinositide phospholipase C	99.41
cd08374	133	C2F_Ferlin C2 domain sixth repeat in Ferlin. Ferli	99.4
smart00239	101	C2 Protein kinase C conserved region 2 (CalB). Ca2	99.4
cd00030	102	C2 C2 domain. The C2 domain was first identified i	99.35
COG5038	1227	Ca2+-dependent lipid-binding protein, contains C2	99.34
PLN02952	599	phosphoinositide phospholipase C	99.34
PLN02270	808	phospholipase D alpha	99.32
KOG1028	421	consensus Ca2+-dependent phospholipid-binding prot	99.3
KOG1328	1103	consensus Synaptic vesicle protein BAIAP3, involve	99.29
cd08689	109	C2_fungal_Pkc1p C2 domain found in protein kinase	99.29
KOG0169	746	consensus Phosphoinositide-specific phospholipase	99.25
COG5038	1227	Ca2+-dependent lipid-binding protein, contains C2	99.24
PLN02230	598	phosphoinositide phospholipase C 4	99.23
PLN02222	581	phosphoinositide phospholipase C 2	99.2
PLN02228	567	Phosphoinositide phospholipase C	99.19
KOG1264	1267	consensus Phospholipase C [Lipid transport and met	99.04
KOG1328	1103	consensus Synaptic vesicle protein BAIAP3, involve	98.91
KOG1031	1169	consensus Predicted Ca2+-dependent phospholipid-bi	98.9
PLN02352	758	phospholipase D epsilon	98.78
KOG1013	362	consensus Synaptic vesicle protein rabphilin-3A [I	98.7
KOG2059	800	consensus Ras GTPase-activating protein [Signal tr	98.68
KOG0905	1639	consensus Phosphoinositide 3-kinase [Signal transd	98.33
KOG3837	523	consensus Uncharacterized conserved protein, conta	98.27
KOG1011	1283	consensus Neurotransmitter release regulator, UNC-	98.19
KOG1013	362	consensus Synaptic vesicle protein rabphilin-3A [I	98.09
cd08683	143	C2_C2cd3 C2 domain found in C2 calcium-dependent d	98.06
KOG1327	529	consensus Copine [Signal transduction mechanisms]	98.03
KOG1326	1105	consensus Membrane-associated protein FER-1 and re	98.0
PLN02964	644	phosphatidylserine decarboxylase	97.99
KOG1265	1189	consensus Phospholipase C [Lipid transport and met	97.9
cd08684	103	C2A_Tac2-N C2 domain first repeat found in Tac2-N	97.88
PF15627	156	CEP76-C2: CEP76 C2 domain	97.74
PF10358	143	NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins;	97.71
KOG1326	1105	consensus Membrane-associated protein FER-1 and re	97.58
PF12416	340	DUF3668: Cep120 protein; InterPro: IPR022136 This	97.5
cd08693	173	C2_PI3K_class_I_beta_delta C2 domain present in cl	97.46
cd08398	158	C2_PI3K_class_I_alpha C2 domain present in class I	97.38
KOG2060	405	consensus Rab3 effector RIM1 and related proteins,	97.17
cd08380	156	C2_PI3K_like C2 domain present in phosphatidylinos	97.14
cd04012	171	C2A_PI3K_class_II C2 domain first repeat present i	97.07
cd08687	98	C2_PKN-like C2 domain in Protein kinase C-like (PK	97.05
cd08399	178	C2_PI3K_class_I_gamma C2 domain present in class I	97.01
PF11618	107	DUF3250: Protein of unknown function (DUF3250); In	96.98
KOG1452	442	consensus Predicted Rho GTPase-activating protein	96.73
cd08397	159	C2_PI3K_class_III C2 domain present in class III p	96.4
KOG1327	529	consensus Copine [Signal transduction mechanisms]	96.26
PF00792	142	PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: I	96.14
cd08695	189	C2_Dock-B C2 domains found in Dedicator Of CytoKin	96.1
PF14429	184	DOCK-C2: C2 domain in Dock180 and Zizimin proteins	96.05
cd08694	196	C2_Dock-A C2 domains found in Dedicator Of CytoKin	96.04
PF15625	168	CC2D2AN-C2: CC2D2A N-terminal C2 domain	95.5
smart00142	100	PI3K_C2 Phosphoinositide 3-kinase, region postulat	94.96
cd08679	178	C2_DOCK180_related C2 domains found in Dedicator O	94.9
KOG1924	1102	consensus RhoA GTPase effector DIA/Diaphanous [Sig	94.46
KOG1924	1102	consensus RhoA GTPase effector DIA/Diaphanous [Sig	93.39
PTZ00447	508	apical membrane antigen 1-like protein; Provisiona	93.01
PF06219	460	DUF1005: Protein of unknown function (DUF1005); In	92.6
cd08697	185	C2_Dock-D C2 domains found in Dedicator Of CytoKin	91.71
PF14909	140	SPATA6: Spermatogenesis-assoc protein 6	91.05
cd08696	179	C2_Dock-C C2 domains found in Dedicator Of CytoKin	90.84
PF09849	247	DUF2076: Uncharacterized protein conserved in bact	90.78
PF14186	147	Aida_C2: Cytoskeletal adhesion; PDB: 2QZQ_A 2QZ5_A	88.63
KOG1329	887	consensus Phospholipase D1 [Lipid transport and me	85.39
PF12416	340	DUF3668: Cep120 protein; InterPro: IPR022136 This	84.86
smart00157	217	PRP Major prion protein. The prion protein is a ma	84.37
PF14924	112	DUF4497: Protein of unknown function (DUF4497)	82.71
KOG3543	1218	consensus Ca2+-dependent activator protein [Signal	82.37
KOG0694	694	consensus Serine/threonine protein kinase [Signal	80.78

>cd04016 C2_Tollip C2 domain present in Toll-interacting protein (Tollip)

Probab=99.92  E-value=6.6e-24  Score=174.13  Aligned_cols=119  Identities=18%  Similarity=0.299  Sum_probs=99.0

Q ss_pred             ccEEEEEEEEecCCCCCCCCCCcceEEEEEEcCcceEEEEeeCCCCCCeeeeEEEEEecchhhhcCCcEEEEEEeecCCC
Q 019724            3 SRALDITVVSASDLKTAGMFSKMNVYAVVTIFGESQTTSVARDCGVRPTWNHQMRFNIDEAAAMQNNLTIVYSIRSTGGC   82 (336)
Q Consensus         3 ~g~L~V~vi~Ak~L~~~d~~g~~dPYv~v~l~~~~~kTkv~~~~t~nP~WnE~f~F~v~~~~~~~~~~~L~v~V~d~d~~   82 (336)
                      .|+|+|+|++||+|++.+ ++++||||+|+++..++||+++++++.||+|||+|.|.+...     ...|.|+|||+|..
T Consensus         1 ~g~L~v~v~~Ak~l~~~~-~g~sDPYv~i~lg~~~~kT~v~~~~~~nP~WNe~F~f~v~~~-----~~~l~~~V~d~d~~   74 (121)
T cd04016           1 VGRLSITVVQAKLVKNYG-LTRMDPYCRIRVGHAVYETPTAYNGAKNPRWNKTIQCTLPEG-----VDSIYIEIFDERAF   74 (121)
T ss_pred             CcEEEEEEEEccCCCcCC-CCCCCceEEEEECCEEEEeEEccCCCCCCccCeEEEEEecCC-----CcEEEEEEEeCCCC
Confidence            479999999999998887 799999999999999999999877789999999999999653     26799999999776


Q ss_pred             CCCcccEEEEEecee-eeccCCCCCCCCeeeeeeCCC-CCcceEEEEEEEE
Q 019724           83 FGNSDLGEVFVPVKE-MLLRSNGDDDKPMSYNITTPG-GRAKGVLNVSYKF  131 (336)
Q Consensus        83 ~~d~~LG~~~v~L~~-l~~~~~~~~~~~~~~~l~~~~-g~~~G~L~lsl~~  131 (336)
                      .+|++||+++|+|.+ +.. +..   ...|+.|..++ .+..|+|+|+|+|
T Consensus        75 ~~dd~iG~~~i~l~~~~~~-g~~---~~~W~~L~~~~~~~~~g~i~l~l~y  121 (121)
T cd04016          75 TMDERIAWTHITIPESVFN-GET---LDDWYSLSGKQGEDKEGMINLVFSY  121 (121)
T ss_pred             cCCceEEEEEEECchhccC-CCC---ccccEeCcCccCCCCceEEEEEEeC
Confidence            689999999999974 443 322   34677776533 3467999999986

Tollip is a part of the Interleukin-1 receptor (IL-1R) signaling pathway. Tollip is proposed to link serine/threonine kinase IRAK to IL-1Rs as well as inhibiting phosphorylation of IRAK. There is a single C2 domain present in Tollip. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice varian

>cd08681 C2_fungal_Inn1p-like C2 domain found in fungal Ingression 1 (Inn1) proteins

Probab=99.88  E-value=5e-22  Score=161.91  Aligned_cols=118  Identities=22%  Similarity=0.334  Sum_probs=99.5

Q ss_pred             cEEEEEEEEecCCCCCCCCCCcceEEEEEEcCcceEEEEeeCCCCCCeeeeEEEEEecchhhhcCCcEEEEEEeecCCCC
Q 019724            4 RALDITVVSASDLKTAGMFSKMNVYAVVTIFGESQTTSVARDCGVRPTWNHQMRFNIDEAAAMQNNLTIVYSIRSTGGCF   83 (336)
Q Consensus         4 g~L~V~vi~Ak~L~~~d~~g~~dPYv~v~l~~~~~kTkv~~~~t~nP~WnE~f~F~v~~~~~~~~~~~L~v~V~d~d~~~   83 (336)
                      |+|+|+|++|++|+..+..+++||||+|++.....||+++++++.||+|||+|.|.+....    ...|.|+|||++. .
T Consensus         1 g~L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~kT~~~~~~~~nP~Wne~f~f~v~~~~----~~~l~i~v~d~~~-~   75 (118)
T cd08681           1 GTLVVVVLKARNLPNKRKLDKQDPYCVLRIGGVTKKTKTDFRGGQHPEWDEELRFEITEDK----KPILKVAVFDDDK-R   75 (118)
T ss_pred             CEEEEEEEEccCCCCCCcCCCCCceEEEEECCCccccccccCCCCCCccCceEEEEecCCC----CCEEEEEEEeCCC-C
Confidence            6899999999999999989999999999999888999987666799999999999997642    4789999999954 4


Q ss_pred             CCcccEEEEEeceeeeccCCCCCCCCeeeeeeCCCCCcceEEEEEEEE
Q 019724           84 GNSDLGEVFVPVKEMLLRSNGDDDKPMSYNITTPGGRAKGVLNVSYKF  131 (336)
Q Consensus        84 ~d~~LG~~~v~L~~l~~~~~~~~~~~~~~~l~~~~g~~~G~L~lsl~~  131 (336)
                      +|++||++.|+|++++.. ..   ...|+.|.+ +++..|+|+|+|+|
T Consensus        76 ~~~~iG~~~~~l~~~~~~-~~---~~~w~~L~~-~~~~~G~i~l~l~f  118 (118)
T cd08681          76 KPDLIGDTEVDLSPALKE-GE---FDDWYELTL-KGRYAGEVYLELTF  118 (118)
T ss_pred             CCcceEEEEEecHHHhhc-CC---CCCcEEecc-CCcEeeEEEEEEEC
Confidence            589999999999998762 21   235677764 45789999999986

Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contr

>cd04019 C2C_MCTP_PRT_plant C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

Probab=99.87  E-value=1.6e-21  Score=166.02  Aligned_cols=129  Identities=16%  Similarity=0.271  Sum_probs=104.9

Q ss_pred             EEEEEEEEecCCCCCCCCCCcceEEEEEEcCcceEEEEeeCCCCCCeeeeEEEEEecchhhhcCCcEEEEEEeecCCCCC
Q 019724            5 ALDITVVSASDLKTAGMFSKMNVYAVVTIFGESQTTSVARDCGVRPTWNHQMRFNIDEAAAMQNNLTIVYSIRSTGGCFG   84 (336)
Q Consensus         5 ~L~V~vi~Ak~L~~~d~~g~~dPYv~v~l~~~~~kTkv~~~~t~nP~WnE~f~F~v~~~~~~~~~~~L~v~V~d~d~~~~   84 (336)
                      .|+|+|++|++|...+.++++||||+|++++..+||+++++++.||+|||+|.|.+.+..    ...|.|+|||++...+
T Consensus         1 ~L~V~Vi~A~~L~~~d~~g~sDPYV~v~l~~~~~kTk~~~~~t~nP~WNE~F~f~v~~~~----~~~l~v~V~d~~~~~~   76 (150)
T cd04019           1 YLRVTVIEAQDLVPSDKNRVPEVFVKAQLGNQVLRTRPSQTRNGNPSWNEELMFVAAEPF----EDHLILSVEDRVGPNK   76 (150)
T ss_pred             CEEEEEEEeECCCCCCCCCCCCeEEEEEECCEEeeeEeccCCCCCCcccCcEEEEecCcc----CCeEEEEEEEecCCCC
Confidence            489999999999999999999999999999988999997665799999999999986532    3689999999976668


Q ss_pred             CcccEEEEEeceeeeccCCCCCCCCeeeeeeCCC--------CCcceEEEEEEEEcccCCC
Q 019724           85 NSDLGEVFVPVKEMLLRSNGDDDKPMSYNITTPG--------GRAKGVLNVSYKFGPSSSA  137 (336)
Q Consensus        85 d~~LG~~~v~L~~l~~~~~~~~~~~~~~~l~~~~--------g~~~G~L~lsl~~~~~~~~  137 (336)
                      |++||++.|+|+++............||.|.+..        .+.+|+|+|.|.|.+....
T Consensus        77 dd~lG~v~i~L~~l~~~~~~~~~~~~W~~L~~~~~~~~~~k~~k~~g~l~l~i~~~~~~~~  137 (150)
T cd04019          77 DEPLGRAVIPLNDIERRVDDRPVPSRWFSLERPGGAMEQKKKRKFASRIHLRLCLDGGYHV  137 (150)
T ss_pred             CCeEEEEEEEHHHCcccCCCCccCCceEECcCCCCcccccccCcccccEEEEEEecCcceE
Confidence            9999999999999875211111245678887643        3567999999999975543

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates

>cd04022 C2A_MCTP_PRT_plant C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

Probab=99.87  E-value=2.4e-21  Score=160.25  Aligned_cols=123  Identities=20%  Similarity=0.271  Sum_probs=101.0

Q ss_pred             EEEEEEEEecCCCCCCCCCCcceEEEEEEcCcceEEEEeeCCCCCCeeeeEEEEEecchhhhcCCcEEEEEEeecCCCC-
Q 019724            5 ALDITVVSASDLKTAGMFSKMNVYAVVTIFGESQTTSVARDCGVRPTWNHQMRFNIDEAAAMQNNLTIVYSIRSTGGCF-   83 (336)
Q Consensus         5 ~L~V~vi~Ak~L~~~d~~g~~dPYv~v~l~~~~~kTkv~~~~t~nP~WnE~f~F~v~~~~~~~~~~~L~v~V~d~d~~~-   83 (336)
                      +|+|+|++|++|...+..+.+||||+|++...++||+++ +++.||+|||+|.|.+.... ......|+|+|||+++.. 
T Consensus         1 ~L~V~vi~A~~L~~~d~~g~~dpyv~v~~~~~~~rT~v~-~~t~nP~Wne~f~f~~~~~~-~~~~~~l~~~V~d~~~~~~   78 (127)
T cd04022           1 KLVVEVVDAQDLMPKDGQGSSSAYVELDFDGQKKRTRTK-PKDLNPVWNEKLVFNVSDPS-RLSNLVLEVYVYNDRRSGR   78 (127)
T ss_pred             CeEEEEEEeeCCCCCCCCCCcCcEEEEEECCEEecceeE-cCCCCCccceEEEEEccCHH-HccCCeEEEEEeeCCCCcC
Confidence            589999999999988888899999999999988999995 46899999999999997542 122468999999996665 


Q ss_pred             CCcccEEEEEeceeeeccCCCCCCCCeeeeeeCC--CCCcceEEEEEEEEc
Q 019724           84 GNSDLGEVFVPVKEMLLRSNGDDDKPMSYNITTP--GGRAKGVLNVSYKFG  132 (336)
Q Consensus        84 ~d~~LG~~~v~L~~l~~~~~~~~~~~~~~~l~~~--~g~~~G~L~lsl~~~  132 (336)
                      +|++||++.|+|+++...+.   ....||.|.++  .++.+|+|+|++.++
T Consensus        79 ~d~~lG~v~i~l~~l~~~~~---~~~~w~~L~~~~~~~~~~G~l~l~~~~~  126 (127)
T cd04022          79 RRSFLGRVRISGTSFVPPSE---AVVQRYPLEKRGLFSRVRGEIGLKVYIT  126 (127)
T ss_pred             CCCeeeEEEEcHHHcCCCCC---ccceEeEeeeCCCCCCccEEEEEEEEEc
Confidence            79999999999999884222   23467777753  356899999999986

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates

>cd08682 C2_Rab11-FIP_classI C2 domain found in Rab11-family interacting proteins (FIP) class I

Probab=99.87  E-value=1.7e-21  Score=160.83  Aligned_cols=122  Identities=17%  Similarity=0.297  Sum_probs=97.5

Q ss_pred             EEEEEEEecCCCCCCCCCCcceEEEEEEcCcceEEEEeeCCCCCCeeeeEEEEEecchhh-hcCCcEEEEEEeecCCCCC
Q 019724            6 LDITVVSASDLKTAGMFSKMNVYAVVTIFGESQTTSVARDCGVRPTWNHQMRFNIDEAAA-MQNNLTIVYSIRSTGGCFG   84 (336)
Q Consensus         6 L~V~vi~Ak~L~~~d~~g~~dPYv~v~l~~~~~kTkv~~~~t~nP~WnE~f~F~v~~~~~-~~~~~~L~v~V~d~d~~~~   84 (336)
                      |+|+|++|++|...+..+++||||+|++...++||++++ ++.||+|||+|.|.+..... +.....|+|+|||++...+
T Consensus         1 ~~V~V~~A~~L~~~d~~g~~dpYv~v~l~~~~~kT~v~~-~t~nP~Wne~f~F~v~~~~~~~~~~~~l~~~v~d~~~~~~   79 (126)
T cd08682           1 VQVTVLQARGLLCKGKSGTNDAYVIIQLGKEKYSTSVKE-KTTSPVWKEECSFELPGLLSGNGNRATLQLTVMHRNLLGL   79 (126)
T ss_pred             CEEEEEECcCCcCCCCCcCCCceEEEEECCeeeeeeeec-CCCCCEeCceEEEEecCcccCCCcCCEEEEEEEEccccCC
Confidence            589999999999988889999999999998889999965 47999999999999976311 1234789999999966667


Q ss_pred             CcccEEEEEeceeeeccCCCCCCCCeeeeeeCC---CCCcceEEEEEEE
Q 019724           85 NSDLGEVFVPVKEMLLRSNGDDDKPMSYNITTP---GGRAKGVLNVSYK  130 (336)
Q Consensus        85 d~~LG~~~v~L~~l~~~~~~~~~~~~~~~l~~~---~g~~~G~L~lsl~  130 (336)
                      |++||++.|+|+++......  ....||.|..+   ..+.+|+|+|+|+
T Consensus        80 d~~iG~~~i~l~~l~~~~~~--~~~~W~~L~~~~~~~~~~~Gei~l~~~  126 (126)
T cd08682          80 DKFLGQVSIPLNDLDEDKGR--RRTRWFKLESKPGKDDKERGEIEVDIQ  126 (126)
T ss_pred             CceeEEEEEEHHHhhccCCC--cccEEEECcCCCCCCccccceEEEEeC
Confidence            99999999999998741121  24478888743   2356899999874

Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The member

>cd04051 C2_SRC2_like C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins

Probab=99.86  E-value=3.2e-21  Score=158.77  Aligned_cols=123  Identities=40%  Similarity=0.666  Sum_probs=102.7

Q ss_pred             EEEEEEEEecCCCCCCCCCCcceEEEEEEcC-cceEEEEeeCCCCCCeeeeEEEEEecchhhhcCCcEEEEEEeecCCCC
Q 019724            5 ALDITVVSASDLKTAGMFSKMNVYAVVTIFG-ESQTTSVARDCGVRPTWNHQMRFNIDEAAAMQNNLTIVYSIRSTGGCF   83 (336)
Q Consensus         5 ~L~V~vi~Ak~L~~~d~~g~~dPYv~v~l~~-~~~kTkv~~~~t~nP~WnE~f~F~v~~~~~~~~~~~L~v~V~d~d~~~   83 (336)
                      +|+|+|++|++|+..+..+++||||+|++.. ..++|+++++++.||+|||+|.|.+....+......|.|+|||+++..
T Consensus         1 ~L~V~V~sA~~L~~~~~~~~~dpYv~v~~~~~~~~~T~~~~~~~~~P~Wne~f~f~v~~~~~~~~~~~l~~~v~d~~~~~   80 (125)
T cd04051           1 TLEITIISAEDLKNVNLFGKMKVYAVVWIDPSHKQSTPVDRDGGTNPTWNETLRFPLDERLLQQGRLALTIEVYCERPSL   80 (125)
T ss_pred             CEEEEEEEcccCCCCCcccCCceEEEEEECCCcccccccccCCCCCCCCCCEEEEEcChHhcccCccEEEEEEEECCCCC
Confidence            5899999999999988889999999999988 679999976678999999999999976532223578999999996667


Q ss_pred             CCcccEEEEEeceeeeccCCCC-CCCCeeeeeeCCCCCcceEEEE
Q 019724           84 GNSDLGEVFVPVKEMLLRSNGD-DDKPMSYNITTPGGRAKGVLNV  127 (336)
Q Consensus        84 ~d~~LG~~~v~L~~l~~~~~~~-~~~~~~~~l~~~~g~~~G~L~l  127 (336)
                      +|++||++.|+|.+++...... .....||.|++.+++.+|+|+|
T Consensus        81 ~~~~lG~~~i~l~~l~~~~~~~~~~~~~~~~l~~~~g~~~G~~~~  125 (125)
T cd04051          81 GDKLIGEVRVPLKDLLDGASPAGELRFLSYQLRRPSGKPQGVLNF  125 (125)
T ss_pred             CCCcEEEEEEEHHHhhcccCCCCcceeEEEEeECCCCCcCeEEeC
Confidence            8999999999999998733321 1245789999988999999985

SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such

>cd04042 C2A_MCTP_PRT C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP)

Probab=99.86  E-value=8.7e-21  Score=155.49  Aligned_cols=119  Identities=13%  Similarity=0.288  Sum_probs=99.4

Q ss_pred             EEEEEEEEecCCCCCCCCCCcceEEEEEEcCc-ceEEEEeeCCCCCCeeeeEEEEEecchhhhcCCcEEEEEEeecCCCC
Q 019724            5 ALDITVVSASDLKTAGMFSKMNVYAVVTIFGE-SQTTSVARDCGVRPTWNHQMRFNIDEAAAMQNNLTIVYSIRSTGGCF   83 (336)
Q Consensus         5 ~L~V~vi~Ak~L~~~d~~g~~dPYv~v~l~~~-~~kTkv~~~~t~nP~WnE~f~F~v~~~~~~~~~~~L~v~V~d~d~~~   83 (336)
                      .|+|+|++|++|...+..+++||||+|++.+. .+||++++ ++.||+|||+|.|.+...     ...|.|+|||+|...
T Consensus         1 ~L~v~v~~a~~L~~~d~~g~~Dpyv~v~~~~~~~~kT~~~~-~t~nP~Wne~f~f~v~~~-----~~~l~~~v~D~d~~~   74 (121)
T cd04042           1 QLDIHLKEGRNLAARDRGGTSDPYVKFKYGGKTVYKSKTIY-KNLNPVWDEKFTLPIEDV-----TQPLYIKVFDYDRGL   74 (121)
T ss_pred             CeEEEEEEeeCCCCcCCCCCCCCeEEEEECCEEEEEeeecc-CCCCCccceeEEEEecCC-----CCeEEEEEEeCCCCC
Confidence            38999999999999998899999999999873 58999865 589999999999998653     368999999997766


Q ss_pred             CCcccEEEEEeceeeeccCCCCCCCCeeeeeeCCC-CCcceEEEEEEEEcc
Q 019724           84 GNSDLGEVFVPVKEMLLRSNGDDDKPMSYNITTPG-GRAKGVLNVSYKFGP  133 (336)
Q Consensus        84 ~d~~LG~~~v~L~~l~~~~~~~~~~~~~~~l~~~~-g~~~G~L~lsl~~~~  133 (336)
                      +|++||++.++|.++.. +..   ...|+.|.... .+..|+|+|+++|.+
T Consensus        75 ~~~~iG~~~~~l~~l~~-~~~---~~~~~~L~~~~~~~~~G~l~l~~~~~~  121 (121)
T cd04042          75 TDDFMGSAFVDLSTLEL-NKP---TEVKLKLEDPNSDEDLGYISLVVTLTP  121 (121)
T ss_pred             CCcceEEEEEEHHHcCC-CCC---eEEEEECCCCCCccCceEEEEEEEECC
Confidence            89999999999999886 221   33678887644 367899999999864

MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protein

>cd08375 C2_Intersectin C2 domain present in Intersectin

Probab=99.85  E-value=1.6e-20  Score=157.38  Aligned_cols=121  Identities=17%  Similarity=0.246  Sum_probs=98.5

Q ss_pred             ccEEEEEEEEecCCCCCCCCCCcceEEEEEEcCcceEEEEeeCCCCCCeeeeEEEEEecchhhhcCCcEEEEEEeecCCC
Q 019724            3 SRALDITVVSASDLKTAGMFSKMNVYAVVTIFGESQTTSVARDCGVRPTWNHQMRFNIDEAAAMQNNLTIVYSIRSTGGC   82 (336)
Q Consensus         3 ~g~L~V~vi~Ak~L~~~d~~g~~dPYv~v~l~~~~~kTkv~~~~t~nP~WnE~f~F~v~~~~~~~~~~~L~v~V~d~d~~   82 (336)
                      .|+|+|+|++|++|...+..+++||||+|+++...+||++++ ++.||+|||+|.|.+....    ...|.|+|||+|..
T Consensus        14 ~G~L~V~Vi~A~~L~~~d~~g~~DPYv~v~~~~~~~kT~vi~-~t~nP~Wne~f~f~v~~~~----~~~l~i~V~D~d~~   88 (136)
T cd08375          14 IGRLMVVIVEGRDLKPCNSNGKSDPYCEVSMGSQEHKTKVVS-DTLNPKWNSSMQFFVKDLE----QDVLCITVFDRDFF   88 (136)
T ss_pred             cEEEEEEEEEeeCCCCCCCCCCcCcEEEEEECCEeeeccccC-CCCCCccCceEEEEecCcc----CCEEEEEEEECCCC
Confidence            579999999999999998889999999999998889999955 5899999999999996532    36899999999766


Q ss_pred             CCCcccEEEEEeceeeeccCCCCCC-CCeeeeeeCCCCCcceEEEEEEEE
Q 019724           83 FGNSDLGEVFVPVKEMLLRSNGDDD-KPMSYNITTPGGRAKGVLNVSYKF  131 (336)
Q Consensus        83 ~~d~~LG~~~v~L~~l~~~~~~~~~-~~~~~~l~~~~g~~~G~L~lsl~~  131 (336)
                      ..|++||+++|+|.+++........ .+.++.+   +...+|+|+|+|+|
T Consensus        89 ~~d~~lG~~~i~l~~l~~~~~~~~~~~~~~~~~---~~~~~g~i~l~~~~  135 (136)
T cd08375          89 SPDDFLGRTEIRVADILKETKESKGPITKRLLL---HEVPTGEVVVKLDL  135 (136)
T ss_pred             CCCCeeEEEEEEHHHhccccccCCCcEEEEecc---ccccceeEEEEEEe
Confidence            6899999999999999862211111 2233333   36678999999987

A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking pro

>cd04033 C2_NEDD4_NEDD4L C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42)

Probab=99.84  E-value=5.1e-20  Score=153.15  Aligned_cols=122  Identities=19%  Similarity=0.380  Sum_probs=99.0

Q ss_pred             EEEEEEEEecCCCCCCCCCCcceEEEEEEcCc-------ceEEEEeeCCCCCCeeeeEEEEEecchhhhcCCcEEEEEEe
Q 019724            5 ALDITVVSASDLKTAGMFSKMNVYAVVTIFGE-------SQTTSVARDCGVRPTWNHQMRFNIDEAAAMQNNLTIVYSIR   77 (336)
Q Consensus         5 ~L~V~vi~Ak~L~~~d~~g~~dPYv~v~l~~~-------~~kTkv~~~~t~nP~WnE~f~F~v~~~~~~~~~~~L~v~V~   77 (336)
                      .|+|+|++|++|...+..+++||||+|++.+.       ..+|+++ +++.||+|||+|.|.+...     ...|.|+||
T Consensus         1 ~L~v~Vi~a~~L~~~d~~~~~Dpyv~v~~~~~~~~~~~~~~kT~v~-~~t~nP~Wne~f~f~~~~~-----~~~l~~~v~   74 (133)
T cd04033           1 ILRVKVLAGIDLAKKDIFGASDPYVKISLYDPDGNGEIDSVQTKTI-KKTLNPKWNEEFFFRVNPR-----EHRLLFEVF   74 (133)
T ss_pred             CEEEEEEEeECCCcccCCCCcCcEEEEEEECCCCCCcccceeeeEE-cCCCCCcEeeEEEEEEcCC-----CCEEEEEEE
Confidence            48999999999999998899999999999765       3789985 4689999999999998653     267999999


Q ss_pred             ecCCCCCCcccEEEEEeceeeeccCCCC--CCCCeeeeeeC--CCCCcceEEEEEEEEc
Q 019724           78 STGGCFGNSDLGEVFVPVKEMLLRSNGD--DDKPMSYNITT--PGGRAKGVLNVSYKFG  132 (336)
Q Consensus        78 d~d~~~~d~~LG~~~v~L~~l~~~~~~~--~~~~~~~~l~~--~~g~~~G~L~lsl~~~  132 (336)
                      |++...+|++||++.|+|.++.......  .....||.|++  ..++.+|+|+|+++|.
T Consensus        75 d~~~~~~~~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~G~l~~~~~~~  133 (133)
T cd04033          75 DENRLTRDDFLGQVEVPLNNLPTETPGNERRYTFKDYLLRPRSSKSRVKGHLRLYMAYL  133 (133)
T ss_pred             ECCCCCCCCeeEEEEEEHHHCCCcCccccccccchheeeeecCCCCcceeEEEEEEeeC
Confidence            9966668999999999999998733221  11345677764  3467899999999984

Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>cd08377 C2C_MCTP_PRT C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP)

Probab=99.84  E-value=4.9e-20  Score=150.19  Aligned_cols=117  Identities=20%  Similarity=0.273  Sum_probs=98.4

Q ss_pred             cEEEEEEEEecCCCCCCCCCCcceEEEEEEcCcceEEEEeeCCCCCCeeeeEEEEEecchhhhcCCcEEEEEEeecCCCC
Q 019724            4 RALDITVVSASDLKTAGMFSKMNVYAVVTIFGESQTTSVARDCGVRPTWNHQMRFNIDEAAAMQNNLTIVYSIRSTGGCF   83 (336)
Q Consensus         4 g~L~V~vi~Ak~L~~~d~~g~~dPYv~v~l~~~~~kTkv~~~~t~nP~WnE~f~F~v~~~~~~~~~~~L~v~V~d~d~~~   83 (336)
                      |.|+|+|++|++|...+..+++||||+|.+.....||++++ ++.||+|||+|.|.+...     ...|.|+|||++...
T Consensus         1 g~l~v~v~~a~~L~~~~~~~~~dPyv~v~~~~~~~~T~~~~-~t~nP~W~e~f~~~~~~~-----~~~l~~~v~d~~~~~   74 (119)
T cd08377           1 GFLQVKVIRASGLAAADIGGKSDPFCVLELVNARLQTHTIY-KTLNPEWNKIFTFPIKDI-----HDVLEVTVYDEDKDK   74 (119)
T ss_pred             CEEEEEEEeeeCCCCCCCCCCCCcEEEEEECCEeeecceec-CCcCCccCcEEEEEecCc-----CCEEEEEEEECCCCC
Confidence            68999999999999999889999999999988889999965 579999999999998653     378999999996656


Q ss_pred             CCcccEEEEEeceeeeccCCCCCCCCeeeeeeCC--CCCcceEEEEEEEEc
Q 019724           84 GNSDLGEVFVPVKEMLLRSNGDDDKPMSYNITTP--GGRAKGVLNVSYKFG  132 (336)
Q Consensus        84 ~d~~LG~~~v~L~~l~~~~~~~~~~~~~~~l~~~--~g~~~G~L~lsl~~~  132 (336)
                      ++++||++.++|.++.. .     ...|+.|.+.  +.+.+|+|.|+++|.
T Consensus        75 ~~~~iG~~~~~l~~~~~-~-----~~~~~~l~~~~~~~~~~G~i~l~~~~~  119 (119)
T cd08377          75 KPEFLGKVAIPLLSIKN-G-----ERKWYALKDKKLRTRAKGSILLEMDVI  119 (119)
T ss_pred             CCceeeEEEEEHHHCCC-C-----CceEEECcccCCCCceeeEEEEEEEeC
Confidence            89999999999999864 1     1256777653  456799999999873

MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal tran

>cd08378 C2B_MCTP_PRT_plant C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

Probab=99.84  E-value=3.9e-20  Score=151.93  Aligned_cols=117  Identities=24%  Similarity=0.294  Sum_probs=95.2

Q ss_pred             EEEEEEEecCCCCCCCCCCcceEEEEEEcCcceEEEEeeCCCCCCeeeeEEEEEecchhhhcCCcEEEEEEeecCCCCCC
Q 019724            6 LDITVVSASDLKTAGMFSKMNVYAVVTIFGESQTTSVARDCGVRPTWNHQMRFNIDEAAAMQNNLTIVYSIRSTGGCFGN   85 (336)
Q Consensus         6 L~V~vi~Ak~L~~~d~~g~~dPYv~v~l~~~~~kTkv~~~~t~nP~WnE~f~F~v~~~~~~~~~~~L~v~V~d~d~~~~d   85 (336)
                      |+|+|++|++|...    ++||||+|++.....||++++ ++.||+|||+|.|.+...    ....|+|+|||+|. .+|
T Consensus         2 L~V~Vi~a~~L~~~----~~Dpyv~v~l~~~~~kT~v~~-~t~nP~Wne~F~f~~~~~----~~~~L~~~v~d~d~-~~~   71 (121)
T cd08378           2 LYVRVVKARGLPAN----SNDPVVEVKLGNYKGSTKAIE-RTSNPEWNQVFAFSKDRL----QGSTLEVSVWDKDK-AKD   71 (121)
T ss_pred             EEEEEEEecCCCcc----cCCCEEEEEECCccccccccC-CCCCCccceEEEEEcCCC----cCCEEEEEEEeCCC-CcC
Confidence            89999999999876    689999999998889999954 579999999999998653    24789999999954 489


Q ss_pred             cccEEEEEeceeeeccCCCC-CCCCeeeeeeCCC-CCcceEEEEEEEEc
Q 019724           86 SDLGEVFVPVKEMLLRSNGD-DDKPMSYNITTPG-GRAKGVLNVSYKFG  132 (336)
Q Consensus        86 ~~LG~~~v~L~~l~~~~~~~-~~~~~~~~l~~~~-g~~~G~L~lsl~~~  132 (336)
                      ++||++.|+|+++..+.... .....||.|.... .+.+|+|+|+|+|.
T Consensus        72 ~~lG~~~i~l~~l~~~~~~~~~~~~~W~~L~~~~~~~~~G~i~l~~~~~  120 (121)
T cd08378          72 DFLGGVCFDLSEVPTRVPPDSPLAPQWYRLEDKKGGRVGGELMLAVWFG  120 (121)
T ss_pred             ceeeeEEEEhHhCcCCCCCCCCCCcceEEccCCCCCccceEEEEEEEec
Confidence            99999999999987632211 1134678887633 57899999999985

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate

>cd08379 C2D_MCTP_PRT_plant C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

Probab=99.84  E-value=2.7e-20  Score=153.75  Aligned_cols=113  Identities=15%  Similarity=0.234  Sum_probs=92.9

Q ss_pred             EEEEEEEEecC---CCCCCCCCCcceEEEEEEcCcceEEEEeeCCCCCCeeeeEEEEEecchhhhcCCcEEEEEEeecCC
Q 019724            5 ALDITVVSASD---LKTAGMFSKMNVYAVVTIFGESQTTSVARDCGVRPTWNHQMRFNIDEAAAMQNNLTIVYSIRSTGG   81 (336)
Q Consensus         5 ~L~V~vi~Ak~---L~~~d~~g~~dPYv~v~l~~~~~kTkv~~~~t~nP~WnE~f~F~v~~~~~~~~~~~L~v~V~d~d~   81 (336)
                      .|+|+|++|++   |...+..+++||||+|+++.++.||++++ +++||+|||+|.|.+....     ..|+|+|||++.
T Consensus         1 ~L~v~v~~A~~~~~l~~~d~~g~sDPYv~i~~g~~~~rTk~~~-~~~nP~WnE~f~f~v~~~~-----~~l~v~V~d~d~   74 (126)
T cd08379           1 ILEVGILGAQGLDVLRAKDGRGSTDAYCVAKYGPKWVRTRTVE-DSSNPRWNEQYTWPVYDPC-----TVLTVGVFDNSQ   74 (126)
T ss_pred             CeEEEEEEeECCccccccccCCCCCeeEEEEECCEEeEcCccc-CCCCCcceeEEEEEecCCC-----CEEEEEEEECCC
Confidence            38999999999   88889899999999999999999999965 5799999999999996542     589999999966


Q ss_pred             CC------CCcccEEEEEeceeeeccCCCCCCCCeeeeeeCC---CCCcceEEEE
Q 019724           82 CF------GNSDLGEVFVPVKEMLLRSNGDDDKPMSYNITTP---GGRAKGVLNV  127 (336)
Q Consensus        82 ~~------~d~~LG~~~v~L~~l~~~~~~~~~~~~~~~l~~~---~g~~~G~L~l  127 (336)
                      .+      +|++||++.|+|.++.. +. .  ...||.|+..   ..+..|+|++
T Consensus        75 ~~~~~~~~~dd~lG~~~i~l~~l~~-~~-~--~~~~~~L~~~~~~~~~~~g~l~~  125 (126)
T cd08379          75 SHWKEAVQPDVLIGKVRIRLSTLED-DR-V--YAHSYPLLSLNPSGVKKMGELEC  125 (126)
T ss_pred             ccccccCCCCceEEEEEEEHHHccC-CC-E--EeeEEEeEeCCCCCccCCcEEEe
Confidence            53      89999999999999886 22 1  2367787753   2456777765

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate

>cd08401 C2A_RasA2_RasA3 C2 domain first repeat present in RasA2 and RasA3

Probab=99.84  E-value=4.4e-20  Score=151.60  Aligned_cols=117  Identities=15%  Similarity=0.208  Sum_probs=94.6

Q ss_pred             EEEEEEEEecCCCCCC-CCCCcceEEEEEEcCcc-eEEEEeeCCCCCCeeeeEEEEEecchhhhcCCcEEEEEEeecCCC
Q 019724            5 ALDITVVSASDLKTAG-MFSKMNVYAVVTIFGES-QTTSVARDCGVRPTWNHQMRFNIDEAAAMQNNLTIVYSIRSTGGC   82 (336)
Q Consensus         5 ~L~V~vi~Ak~L~~~d-~~g~~dPYv~v~l~~~~-~kTkv~~~~t~nP~WnE~f~F~v~~~~~~~~~~~L~v~V~d~d~~   82 (336)
                      .|+|+|++|++|+..+ ..+.+||||+|.+.... .||++++ ++.||+|||+|.|.+.+.     ...|.|+|||+++.
T Consensus         1 ~l~v~v~~a~~L~~~~~~~g~sDpYv~v~l~~~~~~kT~v~~-kt~~P~WnE~F~f~v~~~-----~~~l~~~v~d~~~~   74 (121)
T cd08401           1 SLKIKIGEAKNLPPRSGPNKMRDCYCTVNLDQEEVFRTKTVE-KSLCPFFGEDFYFEIPRT-----FRHLSFYIYDRDVL   74 (121)
T ss_pred             CeEEEEEEccCCCCCCCCCCCcCcEEEEEECCccEEEeeEEE-CCCCCccCCeEEEEcCCC-----CCEEEEEEEECCCC
Confidence            3789999999999864 35789999999997654 7999955 589999999999999754     26899999999777


Q ss_pred             CCCcccEEEEEeceeeeccCCCCCCCCeeeeeeC--CCCCcceEEEEEEEE
Q 019724           83 FGNSDLGEVFVPVKEMLLRSNGDDDKPMSYNITT--PGGRAKGVLNVSYKF  131 (336)
Q Consensus        83 ~~d~~LG~~~v~L~~l~~~~~~~~~~~~~~~l~~--~~g~~~G~L~lsl~~  131 (336)
                      .+|++||++.|+|+++..  ...  ...||.|..  .+++.+|+|+|+++|
T Consensus        75 ~~~~~iG~~~i~l~~l~~--~~~--~~~w~~L~~~~~~~~~~G~i~l~~~~  121 (121)
T cd08401          75 RRDSVIGKVAIKKEDLHK--YYG--KDTWFPLQPVDADSEVQGKVHLELRL  121 (121)
T ss_pred             CCCceEEEEEEEHHHccC--CCC--cEeeEEEEccCCCCcccEEEEEEEEC
Confidence            789999999999999876  222  235667664  345568999999875

RasA2 and RasA3 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA2 and RasA3 are both inositol 1,3,4,5-tetrakisphosphate-binding proteins and contain an N-terminal C2 domain, a Ras-GAP domain, a pleckstrin-homology (PH) domain which localizes it to the plasma membrane, and Bruton's Tyrosine Kinase (BTK) a zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular p

>cd04046 C2_Calpain C2 domain present in Calpain proteins

Probab=99.84  E-value=4.2e-20  Score=152.68  Aligned_cols=119  Identities=15%  Similarity=0.188  Sum_probs=98.4

Q ss_pred             ccEEEEEEEEecCCCCCCCCCCcceEEEEEEcCcceEEEEeeCCCCCCeeeeEEEEEecchhhhcCCcEEEEEEeecCCC
Q 019724            3 SRALDITVVSASDLKTAGMFSKMNVYAVVTIFGESQTTSVARDCGVRPTWNHQMRFNIDEAAAMQNNLTIVYSIRSTGGC   82 (336)
Q Consensus         3 ~g~L~V~vi~Ak~L~~~d~~g~~dPYv~v~l~~~~~kTkv~~~~t~nP~WnE~f~F~v~~~~~~~~~~~L~v~V~d~d~~   82 (336)
                      +.+|+|+|++|++|...+.++++||||+|++....+||+++ +++.||+|||+|.|.+...     ...|+|+|||+ +.
T Consensus         2 ~~~~~V~v~~A~~L~~~d~~g~~dPyv~v~~~~~~~kT~v~-~~t~nP~Wne~f~f~~~~~-----~~~l~i~V~d~-~~   74 (126)
T cd04046           2 QVVTQVHVHSAEGLSKQDSGGGADPYVIIKCEGESVRSPVQ-KDTLSPEFDTQAIFYRKKP-----RSPIKIQVWNS-NL   74 (126)
T ss_pred             cEEEEEEEEeCcCCCCCCCCCCcCccEEEEECCEEEEeCcc-CCCCCCcccceEEEEecCC-----CCEEEEEEEEC-CC
Confidence            56899999999999999888999999999999989999995 4579999999999988654     47899999999 45


Q ss_pred             CCCcccEEEEEeceeeeccCCCCCCCCeeeeee----CCCCCcceEEEEEEEEccc
Q 019724           83 FGNSDLGEVFVPVKEMLLRSNGDDDKPMSYNIT----TPGGRAKGVLNVSYKFGPS  134 (336)
Q Consensus        83 ~~d~~LG~~~v~L~~l~~~~~~~~~~~~~~~l~----~~~g~~~G~L~lsl~~~~~  134 (336)
                      .+|++||++++.+.++..  .    ...+|.|.    +.+++..|+|.|++++...
T Consensus        75 ~~d~~lG~~~~~l~~~~~--~----~~~~~~l~~~~~~~~~~~~G~i~~~~~~~~~  124 (126)
T cd04046          75 LCDEFLGQATLSADPNDS--Q----TLRTLPLRKRGRDAAGEVPGTISVKVTSSDD  124 (126)
T ss_pred             CCCCceEEEEEecccCCC--c----CceEEEcccCCCCCCCCCCCEEEEEEEEccc
Confidence            578999999999987543  1    12345553    2567889999999988654

A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of pic

>cd04024 C2A_Synaptotagmin-like C2 domain first repeat present in Synaptotagmin-like proteins

Probab=99.83  E-value=5.1e-20  Score=151.86  Aligned_cols=122  Identities=19%  Similarity=0.293  Sum_probs=98.9

Q ss_pred             cEEEEEEEEecCCCCCCC--CCCcceEEEEEEcCcceEEEEeeCCCCCCeeeeEEEEEecchhhhcCCcEEEEEEeecCC
Q 019724            4 RALDITVVSASDLKTAGM--FSKMNVYAVVTIFGESQTTSVARDCGVRPTWNHQMRFNIDEAAAMQNNLTIVYSIRSTGG   81 (336)
Q Consensus         4 g~L~V~vi~Ak~L~~~d~--~g~~dPYv~v~l~~~~~kTkv~~~~t~nP~WnE~f~F~v~~~~~~~~~~~L~v~V~d~d~   81 (336)
                      |+|+|+|++|++|...+.  .+++||||+|.+....+||++++ ++.||+|||+|.|.+...    ....|+|+|||++.
T Consensus         1 g~l~v~v~~a~~L~~~~~~~~~~~dPyv~v~~~~~~~kT~~~~-~t~~P~Wne~f~~~~~~~----~~~~l~i~v~d~~~   75 (128)
T cd04024           1 GVLRVHVVEAKDLAAKDRSGKGKSDPYAILSVGAQRFKTQTIP-NTLNPKWNYWCEFPIFSA----QNQLLKLILWDKDR   75 (128)
T ss_pred             CEEEEEEEEeeCCCcccCCCCCCcCCeEEEEECCEEEecceec-CCcCCccCCcEEEEecCC----CCCEEEEEEEECCC
Confidence            689999999999998887  88999999999988889999965 589999999999999752    24789999999976


Q ss_pred             CCCCcccEEEEEeceeeeccCCCCCCCCeeeeeeCC----CCCcceEEEEEEEE
Q 019724           82 CFGNSDLGEVFVPVKEMLLRSNGDDDKPMSYNITTP----GGRAKGVLNVSYKF  131 (336)
Q Consensus        82 ~~~d~~LG~~~v~L~~l~~~~~~~~~~~~~~~l~~~----~g~~~G~L~lsl~~  131 (336)
                      ...|++||+++|+|.++...... .....||.|...    +....|+|+|+++|
T Consensus        76 ~~~~~~lG~~~i~l~~~~~~~~~-~~~~~w~~L~~~~~~~~~~~~G~i~l~~~~  128 (128)
T cd04024          76 FAGKDYLGEFDIALEEVFADGKT-GQSDKWITLKSTRPGKTSVVSGEIHLQFSW  128 (128)
T ss_pred             CCCCCcceEEEEEHHHhhccccc-CccceeEEccCcccCccccccceEEEEEEC
Confidence            66899999999999998742111 113356777643    23479999999875

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permu

>cd08678 C2_C21orf25-like C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein

Probab=99.83  E-value=8.1e-20  Score=150.90  Aligned_cols=119  Identities=17%  Similarity=0.323  Sum_probs=96.7

Q ss_pred             EEEEEEEecCCCCCCCCCCcceEEEEEEcC--cceEEEEeeCCCCCCeeeeEEEEEecchhhhcCCcEEEEEEeecCCCC
Q 019724            6 LDITVVSASDLKTAGMFSKMNVYAVVTIFG--ESQTTSVARDCGVRPTWNHQMRFNIDEAAAMQNNLTIVYSIRSTGGCF   83 (336)
Q Consensus         6 L~V~vi~Ak~L~~~d~~g~~dPYv~v~l~~--~~~kTkv~~~~t~nP~WnE~f~F~v~~~~~~~~~~~L~v~V~d~d~~~   83 (336)
                      |.|+|++|++|..  ..+++||||++++..  ..+||++++ ++.||+|||+|.|.+...     ...|.|+|||++...
T Consensus         1 l~v~v~~A~~L~~--~~g~~dpyv~v~~~~~~~~~kT~v~~-~t~nP~Wne~f~f~~~~~-----~~~l~~~v~d~~~~~   72 (126)
T cd08678           1 LLVKNIKANGLSE--AAGSSNPYCVLEMDEPPQKYQSSTQK-NTSNPFWDEHFLFELSPN-----SKELLFEVYDNGKKS   72 (126)
T ss_pred             CEEEEEEecCCCC--CCCCcCCEEEEEECCCCcEEEeEEEe-cCCCCccCceEEEEeCCC-----CCEEEEEEEECCCCC
Confidence            6899999999987  678999999999974  348999965 579999999999999543     368999999997777


Q ss_pred             CCcccEEEEEeceeeeccCCCCCCCCeeeeeeCC---CCCcceEEEEEEEEcccCC
Q 019724           84 GNSDLGEVFVPVKEMLLRSNGDDDKPMSYNITTP---GGRAKGVLNVSYKFGPSSS  136 (336)
Q Consensus        84 ~d~~LG~~~v~L~~l~~~~~~~~~~~~~~~l~~~---~g~~~G~L~lsl~~~~~~~  136 (336)
                      +|++||++.|+|.+|.....    ...|+.|..+   +....|+|+|+|.|.+..+
T Consensus        73 ~~~~lG~~~i~l~~l~~~~~----~~~~~~L~~~~~~~~~~~G~l~l~~~~~~~~~  124 (126)
T cd08678          73 DSKFLGLAIVPFDELRKNPS----GRQIFPLQGRPYEGDSVSGSITVEFLFMEPAE  124 (126)
T ss_pred             CCceEEEEEEeHHHhccCCc----eeEEEEecCCCCCCCCcceEEEEEEEEecccc
Confidence            89999999999999986222    2256777643   3567999999999977653

The members in this cd are named after the Human C21orf25 which contains a single C2 domain. Several other members contain a C1 domain downstream of the C2 domain. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a

>cd08376 C2B_MCTP_PRT C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP)

Probab=99.83  E-value=7.9e-20  Score=148.44  Aligned_cols=115  Identities=10%  Similarity=0.183  Sum_probs=97.0

Q ss_pred             EEEEEEEEecCCCCCCCCCCcceEEEEEEcCcceEEEEeeCCCCCCeeeeEEEEEecchhhhcCCcEEEEEEeecCCCCC
Q 019724            5 ALDITVVSASDLKTAGMFSKMNVYAVVTIFGESQTTSVARDCGVRPTWNHQMRFNIDEAAAMQNNLTIVYSIRSTGGCFG   84 (336)
Q Consensus         5 ~L~V~vi~Ak~L~~~d~~g~~dPYv~v~l~~~~~kTkv~~~~t~nP~WnE~f~F~v~~~~~~~~~~~L~v~V~d~d~~~~   84 (336)
                      +|+|+|++|++|+..+..+++||||+|++.+...||++++ ++.||+|||+|.|.+....    ...|.|+|||++....
T Consensus         1 ~~~V~v~~a~~L~~~~~~~~~dPyv~v~~~~~~~kT~v~~-~t~nP~Wne~f~f~~~~~~----~~~l~v~v~d~~~~~~   75 (116)
T cd08376           1 VVTIVLVEGKNLPPMDDNGLSDPYVKFRLGNEKYKSKVCS-KTLNPQWLEQFDLHLFDDQ----SQILEIEVWDKDTGKK   75 (116)
T ss_pred             CEEEEEEEEECCCCCCCCCCCCcEEEEEECCEeEeccccc-CCCCCceeEEEEEEecCCC----CCEEEEEEEECCCCCC
Confidence            4899999999999998889999999999988889999954 5899999999999986542    4789999999976668


Q ss_pred             CcccEEEEEeceeeeccCCCCCCCCeeeeeeCCCCCcceEEEEEEEEc
Q 019724           85 NSDLGEVFVPVKEMLLRSNGDDDKPMSYNITTPGGRAKGVLNVSYKFG  132 (336)
Q Consensus        85 d~~LG~~~v~L~~l~~~~~~~~~~~~~~~l~~~~g~~~G~L~lsl~~~  132 (336)
                      |++||++.++|+++.. +.   ....|+.|..    ..|+|+|.|+|.
T Consensus        76 ~~~iG~~~~~l~~l~~-~~---~~~~w~~L~~----~~G~~~~~~~~~  115 (116)
T cd08376          76 DEFIGRCEIDLSALPR-EQ---THSLELELED----GEGSLLLLLTLT  115 (116)
T ss_pred             CCeEEEEEEeHHHCCC-CC---ceEEEEEccC----CCcEEEEEEEec
Confidence            9999999999999876 22   2347788863    269999999875

MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protei

>cd04044 C2A_Tricalbin-like C2 domain first repeat present in Tricalbin-like proteins

Probab=99.83  E-value=1.1e-19  Score=149.02  Aligned_cols=121  Identities=19%  Similarity=0.292  Sum_probs=96.8

Q ss_pred             ccEEEEEEEEecCCCCCCC-CCCcceEEEEEEcC--cceEEEEeeCCCCCCeeeeEEEEEecchhhhcCCcEEEEEEeec
Q 019724            3 SRALDITVVSASDLKTAGM-FSKMNVYAVVTIFG--ESQTTSVARDCGVRPTWNHQMRFNIDEAAAMQNNLTIVYSIRST   79 (336)
Q Consensus         3 ~g~L~V~vi~Ak~L~~~d~-~g~~dPYv~v~l~~--~~~kTkv~~~~t~nP~WnE~f~F~v~~~~~~~~~~~L~v~V~d~   79 (336)
                      .|+|+|+|++|++|+..+. .+.+||||+|++..  ...||++++ ++.||+|||+|.|.+...     ...|.|+|||+
T Consensus         1 ~g~l~v~v~~a~~L~~~~~~~~~~dpyv~v~~~~~~~~~kT~~~~-~~~~P~Wne~~~~~v~~~-----~~~l~~~v~d~   74 (124)
T cd04044           1 IGVLAVTIKSARGLKGSDIIGGTVDPYVTFSISNRRELARTKVKK-DTSNPVWNETKYILVNSL-----TEPLNLTVYDF   74 (124)
T ss_pred             CeEEEEEEEcccCCCcccccCCCCCCeEEEEECCCCcceEeeeec-CCCCCcceEEEEEEeCCC-----CCEEEEEEEec
Confidence            4789999999999996553 46789999999988  569999964 589999999999998732     47899999999


Q ss_pred             CCCCCCcccEEEEEeceeeeccCCCCCCCCeeeeeeCCCCCcceEEEEEEEEcc
Q 019724           80 GGCFGNSDLGEVFVPVKEMLLRSNGDDDKPMSYNITTPGGRAKGVLNVSYKFGP  133 (336)
Q Consensus        80 d~~~~d~~LG~~~v~L~~l~~~~~~~~~~~~~~~l~~~~g~~~G~L~lsl~~~~  133 (336)
                      +...+|++||+++++|.++.....  . ...++.+. .+++.+|+|+|+|+|.+
T Consensus        75 ~~~~~d~~iG~~~~~l~~l~~~~~--~-~~~~~~~~-~~~k~~G~i~~~l~~~p  124 (124)
T cd04044          75 NDKRKDKLIGTAEFDLSSLLQNPE--Q-ENLTKNLL-RNGKPVGELNYDLRFFP  124 (124)
T ss_pred             CCCCCCceeEEEEEEHHHhccCcc--c-cCcchhhh-cCCccceEEEEEEEeCC
Confidence            766689999999999999987222  1 11233333 46778999999999964

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.

>cd04025 C2B_RasA1_RasA4 C2 domain second repeat present in RasA1 and RasA4

Probab=99.83  E-value=8.8e-20  Score=149.87  Aligned_cols=117  Identities=20%  Similarity=0.275  Sum_probs=96.6

Q ss_pred             EEEEEEEEecCCCCCCCCCCcceEEEEEEcCcceEEEEeeCCCCCCeeeeEEEEEecchhhhcCCcEEEEEEeecCCCCC
Q 019724            5 ALDITVVSASDLKTAGMFSKMNVYAVVTIFGESQTTSVARDCGVRPTWNHQMRFNIDEAAAMQNNLTIVYSIRSTGGCFG   84 (336)
Q Consensus         5 ~L~V~vi~Ak~L~~~d~~g~~dPYv~v~l~~~~~kTkv~~~~t~nP~WnE~f~F~v~~~~~~~~~~~L~v~V~d~d~~~~   84 (336)
                      +|+|+|++|++|...+..+.+||||+|++.....+|++++ ++.||+|||+|.|.+....    ...|.|+|||++....
T Consensus         1 ~L~v~vi~a~~L~~~d~~~~~DPyv~v~~~~~~~kT~v~~-~t~nP~Wne~f~f~~~~~~----~~~l~~~v~d~~~~~~   75 (123)
T cd04025           1 RLRCHVLEARDLAPKDRNGTSDPFVRVFYNGQTLETSVVK-KSCYPRWNEVFEFELMEGA----DSPLSVEVWDWDLVSK   75 (123)
T ss_pred             CEEEEEEEeeCCCCCCCCCCcCceEEEEECCEEEeceeec-CCCCCccCcEEEEEcCCCC----CCEEEEEEEECCCCCC
Confidence            5899999999999988888999999999988889999965 5799999999999997642    4689999999966668


Q ss_pred             CcccEEEEEeceeeeccCCCCCCCCeeeeeeC------CCCCcceEEEEEEE
Q 019724           85 NSDLGEVFVPVKEMLLRSNGDDDKPMSYNITT------PGGRAKGVLNVSYK  130 (336)
Q Consensus        85 d~~LG~~~v~L~~l~~~~~~~~~~~~~~~l~~------~~g~~~G~L~lsl~  130 (336)
                      +++||++.++|.++..  ...  ...||.|..      ++++..|.|+|.|+
T Consensus        76 ~~~iG~~~~~l~~l~~--~~~--~~~w~~L~~~~~~~~~~~~~~G~l~~~~~  123 (123)
T cd04025          76 NDFLGKVVFSIQTLQQ--AKQ--EEGWFRLLPDPRAEEESGGNLGSLRLKVR  123 (123)
T ss_pred             CcEeEEEEEEHHHccc--CCC--CCCEEECCCCCCCCccccCceEEEEEEeC
Confidence            9999999999999875  222  235666654      35667899999874

RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such a

>KOG1030 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]

Probab=99.82  E-value=4e-20  Score=156.29  Aligned_cols=94  Identities=19%  Similarity=0.362  Sum_probs=86.6

Q ss_pred             CCccEEEEEEEEecCCCCCCCCCCcceEEEEEEcCcceEEEEeeCCCCCCeeeeEEEEEecchhhhcCCcEEEEEEeecC
Q 019724            1 MGSRALDITVVSASDLKTAGMFSKMNVYAVVTIFGESQTTSVARDCGVRPTWNHQMRFNIDEAAAMQNNLTIVYSIRSTG   80 (336)
Q Consensus         1 m~~g~L~V~vi~Ak~L~~~d~~g~~dPYv~v~l~~~~~kTkv~~~~t~nP~WnE~f~F~v~~~~~~~~~~~L~v~V~d~d   80 (336)
                      |..|.|+|+|+++++|..+|+.+++||||++.+++++.||+++ ++++||+|||+|+|.|.+.     +..|+|+|||+|
T Consensus         3 ~~vGLL~v~v~~g~~L~~rD~~~sSDPyVVl~lg~q~lkT~~v-~~n~NPeWNe~ltf~v~d~-----~~~lkv~VyD~D   76 (168)
T KOG1030|consen    3 MLVGLLRVRVKRGKNLAIRDFLGSSDPYVVLELGNQKLKTRVV-YKNLNPEWNEELTFTVKDP-----NTPLKVTVYDKD   76 (168)
T ss_pred             ccceEEEEEEEeecCeeeeccccCCCCeEEEEECCeeeeeeee-cCCCCCcccceEEEEecCC-----CceEEEEEEeCC
Confidence            4578999999999999999988999999999999999999985 5679999999999999876     489999999998


Q ss_pred             CCCCCcccEEEEEeceeeec
Q 019724           81 GCFGNSDLGEVFVPVKEMLL  100 (336)
Q Consensus        81 ~~~~d~~LG~~~v~L~~l~~  100 (336)
                      ...+||+||+++|+|..+++
T Consensus        77 ~fs~dD~mG~A~I~l~p~~~   96 (168)
T KOG1030|consen   77 TFSSDDFMGEATIPLKPLLE   96 (168)
T ss_pred             CCCcccccceeeeccHHHHH
Confidence            88899999999999999887

>cd04054 C2A_Rasal1_RasA4 C2 domain first repeat present in RasA1 and RasA4

Probab=99.82  E-value=2.7e-19  Score=146.78  Aligned_cols=118  Identities=14%  Similarity=0.241  Sum_probs=95.5

Q ss_pred             EEEEEEEEecCCCCCCCCCCcceEEEEEEcCcc-eEEEEeeCCCCCCeeeeEEEEEecchhhhcCCcEEEEEEeecCCCC
Q 019724            5 ALDITVVSASDLKTAGMFSKMNVYAVVTIFGES-QTTSVARDCGVRPTWNHQMRFNIDEAAAMQNNLTIVYSIRSTGGCF   83 (336)
Q Consensus         5 ~L~V~vi~Ak~L~~~d~~g~~dPYv~v~l~~~~-~kTkv~~~~t~nP~WnE~f~F~v~~~~~~~~~~~L~v~V~d~d~~~   83 (336)
                      .|.|+|++|++|...+..+++||||+|.+.+.. .||+++++ ++||+|||+|.|.+...     ...|.|+|||++...
T Consensus         1 ~l~v~vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~kT~v~~~-t~nP~Wne~f~~~~~~~-----~~~l~v~v~d~~~~~   74 (121)
T cd04054           1 SLYIRIVEGKNLPAKDITGSSDPYCIVKVDNEVIIRTATVWK-TLNPFWGEEYTVHLPPG-----FHTVSFYVLDEDTLS   74 (121)
T ss_pred             CEEEEEEEeeCCcCCCCCCCCCceEEEEECCEeeeeeeeEcC-CCCCcccceEEEeeCCC-----CCEEEEEEEECCCCC
Confidence            389999999999999999999999999998754 69999655 79999999999998653     268999999997777


Q ss_pred             CCcccEEEEEeceeeeccCCCCCCCCeeeeeeC--CCCCcceEEEEEEEE
Q 019724           84 GNSDLGEVFVPVKEMLLRSNGDDDKPMSYNITT--PGGRAKGVLNVSYKF  131 (336)
Q Consensus        84 ~d~~LG~~~v~L~~l~~~~~~~~~~~~~~~l~~--~~g~~~G~L~lsl~~  131 (336)
                      .|++||++.+.+.++.. .....  ..|+.|+.  ...+..|+|+|++++
T Consensus        75 ~d~~iG~~~~~~~~~~~-~~~~~--~~W~~L~~~~~~~~~~G~i~l~~~~  121 (121)
T cd04054          75 RDDVIGKVSLTREVISA-HPRGI--DGWMNLTEVDPDEEVQGEIHLELSV  121 (121)
T ss_pred             CCCEEEEEEEcHHHhcc-CCCCC--CcEEECeeeCCCCccccEEEEEEEC
Confidence            89999999999988764 22222  24666643  455678999998863

Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins.

>cd08677 C2A_Synaptotagmin-13 C2 domain

Probab=99.82  E-value=1.1e-19  Score=147.66  Aligned_cols=93  Identities=14%  Similarity=0.302  Sum_probs=79.8

Q ss_pred             CccEEEEEEEEecCCCCCCCCCCcceEEEEEEcC----cceEEEEeeCCCCCCeeeeEEEEEecchhhhcCCcEEEEEEe
Q 019724            2 GSRALDITVVSASDLKTAGMFSKMNVYAVVTIFG----ESQTTSVARDCGVRPTWNHQMRFNIDEAAAMQNNLTIVYSIR   77 (336)
Q Consensus         2 ~~g~L~V~vi~Ak~L~~~d~~g~~dPYv~v~l~~----~~~kTkv~~~~t~nP~WnE~f~F~v~~~~~~~~~~~L~v~V~   77 (336)
                      ..++|+|+|++|++|+   ..+.+||||+|+|..    .+++|+| +++|+||+|||+|.|+|..+.  ..+.+|.|+||
T Consensus        12 ~~~~L~V~vikA~~L~---~~g~sDPYVKv~L~~~~k~~k~kT~v-~rktlnPvfnE~f~F~v~~~~--l~~~tL~~~V~   85 (118)
T cd08677          12 QKAELHVNILEAENIS---VDAGCECYISGCVSVSEGQKEAQTAL-KKLALHTQWEEELVFPLPEEE--SLDGTLTLTLR   85 (118)
T ss_pred             cCCEEEEEEEEecCCC---CCCCCCeEEEEEEcCCcCccEEEcce-ecCCCCCccccEEEEeCCHHH--hCCcEEEEEEE
Confidence            3579999999999998   246699999999975    2488998 556899999999999998764  35688999999


Q ss_pred             ecCCCCCCcccEEEEEeceeeec
Q 019724           78 STGGCFGNSDLGEVFVPVKEMLL  100 (336)
Q Consensus        78 d~d~~~~d~~LG~~~v~L~~l~~  100 (336)
                      |+|+..++++||++.++|+++..
T Consensus        86 d~Drfs~~d~IG~v~l~l~~~~~  108 (118)
T cd08677          86 CCDRFSRHSTLGELRLKLADVSM  108 (118)
T ss_pred             eCCCCCCCceEEEEEEccccccC
Confidence            99998899999999999998744

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domain

>cd04036 C2_cPLA2 C2 domain present in cytosolic PhosphoLipase A2 (cPLA2)

Probab=99.81  E-value=2.3e-19  Score=146.56  Aligned_cols=114  Identities=18%  Similarity=0.387  Sum_probs=93.8

Q ss_pred             EEEEEEEecCCCCCCCCCCcceEEEEEEcC---cceEEEEeeCCCCCCeeeeEEEEEecchhhhcCCcEEEEEEeecCCC
Q 019724            6 LDITVVSASDLKTAGMFSKMNVYAVVTIFG---ESQTTSVARDCGVRPTWNHQMRFNIDEAAAMQNNLTIVYSIRSTGGC   82 (336)
Q Consensus         6 L~V~vi~Ak~L~~~d~~g~~dPYv~v~l~~---~~~kTkv~~~~t~nP~WnE~f~F~v~~~~~~~~~~~L~v~V~d~d~~   82 (336)
                      |+|+|++|++|+..+..+++||||+|++..   ..+||++++ ++.||+|||+|.|.+....    ...|+|+|||+|..
T Consensus         2 L~V~vi~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~vv~-~t~nP~Wne~f~f~i~~~~----~~~l~v~v~d~d~~   76 (119)
T cd04036           2 LTVRVLRATNITKGDLLSTPDCYVELWLPTASDEKKRTKTIK-NSINPVWNETFEFRIQSQV----KNVLELTVMDEDYV   76 (119)
T ss_pred             eEEEEEEeeCCCccCCCCCCCcEEEEEEcCCCCccCccceec-CCCCCccceEEEEEeCccc----CCEEEEEEEECCCC
Confidence            789999999999988889999999999864   348999965 5799999999999986542    36799999999666


Q ss_pred             CCCcccEEEEEeceeeeccCCCCCCCCeeeeeeCCCCCcceEEEEEEEEc
Q 019724           83 FGNSDLGEVFVPVKEMLLRSNGDDDKPMSYNITTPGGRAKGVLNVSYKFG  132 (336)
Q Consensus        83 ~~d~~LG~~~v~L~~l~~~~~~~~~~~~~~~l~~~~g~~~G~L~lsl~~~  132 (336)
                       +|++||++.++|.++.. +.   ....|+.|..   ..+|+|+|+|.+.
T Consensus        77 -~~~~iG~~~~~l~~l~~-g~---~~~~~~~L~~---~~~g~l~~~~~~~  118 (119)
T cd04036          77 -MDDHLGTVLFDVSKLKL-GE---KVRVTFSLNP---QGKEELEVEFLLE  118 (119)
T ss_pred             -CCcccEEEEEEHHHCCC-CC---cEEEEEECCC---CCCceEEEEEEee
Confidence             89999999999999875 22   1346788763   3589999988874

A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants o

>cd08400 C2_Ras_p21A1 C2 domain present in RAS p21 protein activator 1 (RasA1)

Probab=99.81  E-value=3.6e-19  Score=147.14  Aligned_cols=119  Identities=19%  Similarity=0.341  Sum_probs=94.9

Q ss_pred             ccEEEEEEEEecCCCCCCCCCCcceEEEEEEcCcc-eEEEEeeCCCCCCeeeeEEEEEecchhhhcCCcEEEEEEeecCC
Q 019724            3 SRALDITVVSASDLKTAGMFSKMNVYAVVTIFGES-QTTSVARDCGVRPTWNHQMRFNIDEAAAMQNNLTIVYSIRSTGG   81 (336)
Q Consensus         3 ~g~L~V~vi~Ak~L~~~d~~g~~dPYv~v~l~~~~-~kTkv~~~~t~nP~WnE~f~F~v~~~~~~~~~~~L~v~V~d~d~   81 (336)
                      .+.|+|+|++|++|+..   +.+||||+|++.+.. .||++ ++ +.||.|||+|.|.+....    ...|+|+|||+++
T Consensus         3 ~~~L~V~Vi~A~~L~~~---~~~DPYv~v~l~~~~~~kT~v-~~-~~nP~WnE~f~f~~~~~~----~~~l~v~v~d~~~   73 (126)
T cd08400           3 VRSLQLNVLEAHKLPVK---HVPHPYCVISLNEVKVARTKV-RE-GPNPVWSEEFVFDDLPPD----VNSFTISLSNKAK   73 (126)
T ss_pred             eeEEEEEEEEeeCCCCC---CCCCeeEEEEECCEeEEEeec-CC-CCCCccCCEEEEecCCCC----cCEEEEEEEECCC
Confidence            46899999999999875   368999999998754 68887 44 799999999999864432    2578999999977


Q ss_pred             CCCCcccEEEEEeceeeeccCCCCCCCCeeeeeeCC---CCCcceEEEEEEEEccc
Q 019724           82 CFGNSDLGEVFVPVKEMLLRSNGDDDKPMSYNITTP---GGRAKGVLNVSYKFGPS  134 (336)
Q Consensus        82 ~~~d~~LG~~~v~L~~l~~~~~~~~~~~~~~~l~~~---~g~~~G~L~lsl~~~~~  134 (336)
                      ..+|++||++.|+|.++.. +. .  ...||.|...   ..+..|+|+|+|+|.+.
T Consensus        74 ~~~d~~iG~v~i~l~~l~~-~~-~--~~~W~~L~~~~~~~~~~~G~i~l~l~~~~~  125 (126)
T cd08400          74 RSKDSEIAEVTVQLSKLQN-GQ-E--TDEWYPLSSASPLKGGEWGSLRIRARYSHE  125 (126)
T ss_pred             CCCCCeEEEEEEEHhHccC-CC-c--ccEeEEcccCCCCCCCcCcEEEEEEEEEcc
Confidence            7789999999999999876 22 1  3467777653   24567999999999864

RasA1 is a GAP1 (GTPase activating protein 1), a Ras-specific GAP member, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA1 contains a C2 domain, a Ras-GAP domain, a pleckstrin homology (PH)-like domain, a SH3 domain, and 2 SH2 domains. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficki

>cd04017 C2D_Ferlin C2 domain fourth repeat in Ferlin

Probab=99.81  E-value=9e-19  Score=146.44  Aligned_cols=127  Identities=23%  Similarity=0.287  Sum_probs=98.5

Q ss_pred             EEEEEEEEecCCCCCCCCCCcceEEEEEEcCcceEEEEeeCCCCCCeeeeEEEEEecchh-----hhcCCcEEEEEEeec
Q 019724            5 ALDITVVSASDLKTAGMFSKMNVYAVVTIFGESQTTSVARDCGVRPTWNHQMRFNIDEAA-----AMQNNLTIVYSIRST   79 (336)
Q Consensus         5 ~L~V~vi~Ak~L~~~d~~g~~dPYv~v~l~~~~~kTkv~~~~t~nP~WnE~f~F~v~~~~-----~~~~~~~L~v~V~d~   79 (336)
                      .|+|+|++|++|...+..+++||||+|++....+||++++ ++.||+|||+|.|.+....     ...+...|.|+|||+
T Consensus         2 ~l~v~V~~a~~L~~~d~~g~~dpyv~v~~~~~~~kT~v~~-~t~nP~Wne~~~f~~~~~~~~~~~~~~~~~~l~v~V~d~   80 (135)
T cd04017           2 QLRAYIYQARDLLAADKSGLSDPFARVSFLNQSQETEVIK-ETLSPTWDQTLIFDEVELYGSPEEIAQNPPLVVVELFDQ   80 (135)
T ss_pred             EEEEEEEEeecCcCCCCCCCCCCEEEEEECCeeeEeeeEc-CCCCCccCcEEEEeeeeccCChHHhhcCCCEEEEEEEeC
Confidence            5899999999999999899999999999998889999964 5899999999999854321     111235799999999


Q ss_pred             CCCCCCcccEEEEE-eceeeeccCCCCCCCCeeeeeeCCCCCcceEEEEEEEEccc
Q 019724           80 GGCFGNSDLGEVFV-PVKEMLLRSNGDDDKPMSYNITTPGGRAKGVLNVSYKFGPS  134 (336)
Q Consensus        80 d~~~~d~~LG~~~v-~L~~l~~~~~~~~~~~~~~~l~~~~g~~~G~L~lsl~~~~~  134 (336)
                      |+..+|++||++.+ ++..+.. .........|+.|.+ .+..+|+|.|++++.+.
T Consensus        81 d~~~~d~~iG~~~i~~~~~~~~-~~~~~~~~~W~~L~~-~~~~~Geil~~~~~~~~  134 (135)
T cd04017          81 DSVGKDEFLGRSVAKPLVKLDL-EEDFPPKLQWFPIYK-GGQSAGELLAAFELIEV  134 (135)
T ss_pred             cCCCCCccceEEEeeeeeeccc-CCCCCCCceEEEeec-CCCchhheeEEeEEEEe
Confidence            77778999999987 4444433 111222457888864 45689999999998764

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme

>cd08391 C2A_C2C_Synaptotagmin_like C2 domain first and third repeat in Synaptotagmin-like proteins

Probab=99.81  E-value=3.6e-19  Score=145.26  Aligned_cols=115  Identities=17%  Similarity=0.248  Sum_probs=95.0

Q ss_pred             cEEEEEEEEecCCCCCCC------CCCcceEEEEEEcCcceEEEEeeCCCCCCeeeeEEEEEecchhhhcCCcEEEEEEe
Q 019724            4 RALDITVVSASDLKTAGM------FSKMNVYAVVTIFGESQTTSVARDCGVRPTWNHQMRFNIDEAAAMQNNLTIVYSIR   77 (336)
Q Consensus         4 g~L~V~vi~Ak~L~~~d~------~g~~dPYv~v~l~~~~~kTkv~~~~t~nP~WnE~f~F~v~~~~~~~~~~~L~v~V~   77 (336)
                      |+|+|+|++|++|...+.      .+++||||+|++....+||++++ ++.||+|||+|.|.+....    ...|+|+||
T Consensus         1 g~l~v~v~~a~~L~~~d~~~~~~~~g~~dPyv~v~~~~~~~kT~~~~-~t~~P~W~e~f~~~v~~~~----~~~l~i~v~   75 (121)
T cd08391           1 GVLRIHVIEAQDLVAKDKFVGGLVKGKSDPYVIVRVGAQTFKSKVIK-ENLNPKWNEVYEAVVDEVP----GQELEIELF   75 (121)
T ss_pred             CeEEEEEEEccCCcccccccccCCCCCcCCEEEEEECCEeEEccccC-CCCCCcccceEEEEeCCCC----CCEEEEEEE
Confidence            679999999999998764      36799999999998889999954 5899999999999986532    478999999


Q ss_pred             ecCCCCCCcccEEEEEeceeeeccCCCCCCCCeeeeeeCCCCCcceEEEEEEEE
Q 019724           78 STGGCFGNSDLGEVFVPVKEMLLRSNGDDDKPMSYNITTPGGRAKGVLNVSYKF  131 (336)
Q Consensus        78 d~d~~~~d~~LG~~~v~L~~l~~~~~~~~~~~~~~~l~~~~g~~~G~L~lsl~~  131 (336)
                      |++.. +|++||++.|+|.++..  .+.  ...||.|..   ...|+|+|+++|
T Consensus        76 d~~~~-~~~~iG~~~i~l~~l~~--~~~--~~~w~~L~~---~~~G~~~~~~~~  121 (121)
T cd08391          76 DEDPD-KDDFLGRLSIDLGSVEK--KGF--IDEWLPLED---VKSGRLHLKLEW  121 (121)
T ss_pred             ecCCC-CCCcEEEEEEEHHHhcc--cCc--cceEEECcC---CCCceEEEEEeC
Confidence            99655 89999999999999986  222  346788763   367999999875

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular

>cd04014 C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) epsilon

Probab=99.81  E-value=7.1e-19  Score=146.35  Aligned_cols=119  Identities=15%  Similarity=0.262  Sum_probs=97.3

Q ss_pred             CCccEEEEEEEEecCCCCCCCC----------CCcceEEEEEEcCcc-eEEEEeeCCCCCCeeeeEEEEEecchhhhcCC
Q 019724            1 MGSRALDITVVSASDLKTAGMF----------SKMNVYAVVTIFGES-QTTSVARDCGVRPTWNHQMRFNIDEAAAMQNN   69 (336)
Q Consensus         1 m~~g~L~V~vi~Ak~L~~~d~~----------g~~dPYv~v~l~~~~-~kTkv~~~~t~nP~WnE~f~F~v~~~~~~~~~   69 (336)
                      |..|.|+|+|++|++|...+..          +.+||||+|++.+.. .||+++ +++.||+|||+|.|.+..      .
T Consensus         1 ~~~g~l~V~v~~a~~L~~~d~~~~~~~~~~~~g~~dpyv~v~~~~~~~~kT~~~-~~t~~P~Wne~f~~~v~~------~   73 (132)
T cd04014           1 MFTGTLKIKICEAVDLKPTDWSTRHAVPKKGSQLLDPYVSIDVDDTHIGKTSTK-PKTNSPVWNEEFTTEVHN------G   73 (132)
T ss_pred             CcceEEEEEEEEecCCCCCCchhhhcccccCccCcCcEEEEEECCEEEeEEeEc-CCCCCCCcceeEEEEcCC------C
Confidence            6789999999999999887752          578999999998766 688884 568999999999999963      3


Q ss_pred             cEEEEEEeecCCCCCCcccEEEEEeceeeeccCCCCCCCCeeeeeeCCCCCcceEEEEEEEEcc
Q 019724           70 LTIVYSIRSTGGCFGNSDLGEVFVPVKEMLLRSNGDDDKPMSYNITTPGGRAKGVLNVSYKFGP  133 (336)
Q Consensus        70 ~~L~v~V~d~d~~~~d~~LG~~~v~L~~l~~~~~~~~~~~~~~~l~~~~g~~~G~L~lsl~~~~  133 (336)
                      ..|.|+|||++....|++||++.|+|+++......  ....|+.|.     ..|+|+|+|+|..
T Consensus        74 ~~l~~~v~d~~~~~~~~~iG~~~i~l~~l~~~~~~--~~~~w~~L~-----~~G~l~l~~~~~~  130 (132)
T cd04014          74 RNLELTVFHDAAIGPDDFVANCTISFEDLIQRGSG--SFDLWVDLE-----PQGKLHVKIELKG  130 (132)
T ss_pred             CEEEEEEEeCCCCCCCceEEEEEEEhHHhcccCCC--cccEEEEcc-----CCcEEEEEEEEec
Confidence            68999999986666789999999999998862111  234678875     4699999999865

A single C2 domain is found in PKC epsilon. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1 (alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that

>cd04015 C2_plant_PLD C2 domain present in plant phospholipase D (PLD)

Probab=99.81  E-value=7.9e-19  Score=150.76  Aligned_cols=120  Identities=22%  Similarity=0.382  Sum_probs=96.0

Q ss_pred             CccEEEEEEEEecCCCCCCC------------------------------CCCcceEEEEEEcCcc-eEEEEeeCCCCCC
Q 019724            2 GSRALDITVVSASDLKTAGM------------------------------FSKMNVYAVVTIFGES-QTTSVARDCGVRP   50 (336)
Q Consensus         2 ~~g~L~V~vi~Ak~L~~~d~------------------------------~g~~dPYv~v~l~~~~-~kTkv~~~~t~nP   50 (336)
                      -+|+|+|+|++|++|..+|.                              .+++||||+|++.+.. .||++++ ++.||
T Consensus         5 lhG~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~sDPYv~V~l~~~~~~rT~v~~-~~~nP   83 (158)
T cd04015           5 LHGTLDVTIYEADNLPNMDMFSEKLRRFFSKLVGCSEPTLKRPSSHRHVGKITSDPYATVDLAGARVARTRVIE-NSENP   83 (158)
T ss_pred             EeeeeEEEEEEeccCCCcccccchhhHHHHHHHhhcccccccccccccCCCCCcCeEEEEEECCeEeeEEEEeC-CCCCC
Confidence            37899999999999998762                              4568999999998765 6999965 57999


Q ss_pred             eeeeEEEEEecchhhhcCCcEEEEEEeecCCCCCCcccEEEEEeceeeeccCCCCCCCCeeeeeeCCCC---CcceEEEE
Q 019724           51 TWNHQMRFNIDEAAAMQNNLTIVYSIRSTGGCFGNSDLGEVFVPVKEMLLRSNGDDDKPMSYNITTPGG---RAKGVLNV  127 (336)
Q Consensus        51 ~WnE~f~F~v~~~~~~~~~~~L~v~V~d~d~~~~d~~LG~~~v~L~~l~~~~~~~~~~~~~~~l~~~~g---~~~G~L~l  127 (336)
                      +|||+|.|.+....     ..|+|+|||+ +.+++++||++.|+|+++.. +..   ...|+.|.+..+   +..++|+|
T Consensus        84 ~WnE~F~~~~~~~~-----~~l~~~V~d~-d~~~~~~IG~~~i~l~~l~~-g~~---~~~w~~L~~~~~~~~~~~~~l~v  153 (158)
T cd04015          84 VWNESFHIYCAHYA-----SHVEFTVKDN-DVVGAQLIGRAYIPVEDLLS-GEP---VEGWLPILDSNGKPPKPGAKIRV  153 (158)
T ss_pred             ccceEEEEEccCCC-----CEEEEEEEeC-CCcCCcEEEEEEEEhHHccC-CCC---cceEEECcCCCCCCCCCCCEEEE
Confidence            99999999986542     6799999999 45578899999999999886 222   346788876322   33589999


Q ss_pred             EEEEc
Q 019724          128 SYKFG  132 (336)
Q Consensus       128 sl~~~  132 (336)
                      +++|.
T Consensus       154 ~~~f~  158 (158)
T cd04015         154 SLQFT  158 (158)
T ss_pred             EEEEC
Confidence            99984

PLD hydrolyzes terminal phosphodiester bonds in diester glycerophospholipids resulting in the degradation of phospholipids. In vitro PLD transfers phosphatidic acid to primary alcohols. In plants PLD plays a role in germination, seedling growth, phosphatidylinositol metabolism, and changes in phospholipid composition. There is a single Ca(2+)/phospholipid-binding C2 domain in PLD. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins whic

>cd08395 C2C_Munc13 C2 domain third repeat in Munc13 (mammalian uncoordinated) proteins

Probab=99.80  E-value=3.1e-19  Score=146.16  Aligned_cols=105  Identities=13%  Similarity=0.238  Sum_probs=83.4

Q ss_pred             EEEEEEEEecCCCCCCCCCCcceEEEEEEcC----c---ceEEEEeeCCCCCCeeeeEEEEEecchhhhcCCcEEEEEEe
Q 019724            5 ALDITVVSASDLKTAGMFSKMNVYAVVTIFG----E---SQTTSVARDCGVRPTWNHQMRFNIDEAAAMQNNLTIVYSIR   77 (336)
Q Consensus         5 ~L~V~vi~Ak~L~~~d~~g~~dPYv~v~l~~----~---~~kTkv~~~~t~nP~WnE~f~F~v~~~~~~~~~~~L~v~V~   77 (336)
                      +|+|+|++|++|+..+ .+++||||+|+|.+    .   ++||++ +++++||+|||+|.|.|.... ......|.|+||
T Consensus         1 kL~V~Vi~A~~L~~~d-~g~~DPYVkV~l~g~~~~~k~~k~kTkv-~~~tlnPvwNE~f~F~v~~~~-~~~~~~L~~~V~   77 (120)
T cd08395           1 KVTVKVVAANDLKWQT-TGMFRPFVEVNLIGPHLSDKKRKFATKS-KNNNWSPKYNETFQFILGNED-DPESYELHICVK   77 (120)
T ss_pred             CEEEEEEECcCCCccc-CCCCCCEEEEEEecCCCcccccEeeeEE-ecCCCCCccCcEEEEEeeCcC-CCceeEEEEEEE
Confidence            5899999999999887 48999999999842    2   267888 467899999999999997542 234567999999


Q ss_pred             ecCCCCCCcccEEEEEeceeeeccCCCCCCCCeeeeeeC
Q 019724           78 STGGCFGNSDLGEVFVPVKEMLLRSNGDDDKPMSYNITT  116 (336)
Q Consensus        78 d~d~~~~d~~LG~~~v~L~~l~~~~~~~~~~~~~~~l~~  116 (336)
                      |+|...+|++||++.|+|+++..  .+.  ...|+.|..
T Consensus        78 D~d~~~~dd~IG~~~l~l~~~~~--~~~--~~~w~~L~~  112 (120)
T cd08395          78 DYCFARDDRLVGVTVLQLRDIAQ--AGS--CACWLPLGR  112 (120)
T ss_pred             EecccCCCCEEEEEEEEHHHCcC--CCc--EEEEEECcC
Confidence            99655579999999999999986  222  346777754

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi

>cd08382 C2_Smurf-like C2 domain present in Smad ubiquitination-related factor (Smurf)-like proteins

Probab=99.80  E-value=8.7e-19  Score=144.20  Aligned_cols=116  Identities=20%  Similarity=0.304  Sum_probs=93.0

Q ss_pred             EEEEEEEEecCCCCCCCCCCcceEEEEEEc-CcceEEEEeeCCCCCCeeeeEEEEEecchhhhcCCcEEEEEEeecCCCC
Q 019724            5 ALDITVVSASDLKTAGMFSKMNVYAVVTIF-GESQTTSVARDCGVRPTWNHQMRFNIDEAAAMQNNLTIVYSIRSTGGCF   83 (336)
Q Consensus         5 ~L~V~vi~Ak~L~~~d~~g~~dPYv~v~l~-~~~~kTkv~~~~t~nP~WnE~f~F~v~~~~~~~~~~~L~v~V~d~d~~~   83 (336)
                      +|+|+|++|++|...+.++++||||+|++. ...+||++++ ++.||+|||+|.|.+..      ...|.|+|||++...
T Consensus         1 ~l~v~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~~kT~v~~-~t~nP~Wne~f~~~~~~------~~~l~i~V~d~~~~~   73 (123)
T cd08382           1 KVRLTVLCADGLAKRDLFRLPDPFAVITVDGGQTHSTDVAK-KTLDPKWNEHFDLTVGP------SSIITIQVFDQKKFK   73 (123)
T ss_pred             CeEEEEEEecCCCccCCCCCCCcEEEEEECCccceEccEEc-CCCCCcccceEEEEeCC------CCEEEEEEEECCCCC
Confidence            489999999999999988999999999997 4558999954 57999999999999965      368999999995554


Q ss_pred             C--CcccEEEEEeceeeeccCCCCCCCCeeeeeeCC----CCCcceEEEEEEE
Q 019724           84 G--NSDLGEVFVPVKEMLLRSNGDDDKPMSYNITTP----GGRAKGVLNVSYK  130 (336)
Q Consensus        84 ~--d~~LG~~~v~L~~l~~~~~~~~~~~~~~~l~~~----~g~~~G~L~lsl~  130 (336)
                      .  |++||++.|+|.+|+.....   ...|+.|++.    .+...|+|.++++
T Consensus        74 ~~~d~~lG~~~i~l~~l~~~~~~---~~~~~~l~~~~~~~~~~~~G~v~~~~~  123 (123)
T cd08382          74 KKDQGFLGCVRIRANAVLPLKDT---GYQRLDLRKLKKSDNLSVRGKIVVSLS  123 (123)
T ss_pred             CCCCceEeEEEEEHHHccccCCC---ccceeEeecCCCCCCceEeeEEEEEeC
Confidence            3  57999999999999863322   1246666542    3556899988763

A single C2 domain is found in Smurf proteins, C2-WW-HECT-domain E3s, which play an important role in the downregulation of the TGF-beta signaling pathway. Smurf proteins also regulate cell shape, motility, and polarity by degrading small guanosine triphosphatases (GTPases). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are

>cd08381 C2B_PI3K_class_II C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks)

Probab=99.80  E-value=6.2e-19  Score=145.01  Aligned_cols=94  Identities=22%  Similarity=0.273  Sum_probs=80.4

Q ss_pred             ccEEEEEEEEecCCCCCCCCCCcceEEEEEEcCc-----ceEEEEeeCCCCCCeeeeEEEEEe-cchhhhcCCcEEEEEE
Q 019724            3 SRALDITVVSASDLKTAGMFSKMNVYAVVTIFGE-----SQTTSVARDCGVRPTWNHQMRFNI-DEAAAMQNNLTIVYSI   76 (336)
Q Consensus         3 ~g~L~V~vi~Ak~L~~~d~~g~~dPYv~v~l~~~-----~~kTkv~~~~t~nP~WnE~f~F~v-~~~~~~~~~~~L~v~V   76 (336)
                      .++|+|+|++|++|...+ .+.+||||+|++...     ++||++++ +++||+|||+|.|.+ ....  .....|+|+|
T Consensus        12 ~~~L~V~Vi~A~~L~~~~-~~~~DpyVkv~l~~~~~~~~~~kT~v~~-~~~nP~wnE~F~f~~~~~~~--l~~~~L~~~V   87 (122)
T cd08381          12 NGTLFVMVMHAKNLPLLD-GSDPDPYVKTYLLPDPQKTTKRKTKVVR-KTRNPTFNEMLVYDGLPVED--LQQRVLQVSV   87 (122)
T ss_pred             CCEEEEEEEEeeCCCCCC-CCCCCCEEEEEEeeCCccCCceeCCccC-CCCCCCcccEEEEecCChHH--hCCCEEEEEE
Confidence            468999999999999998 889999999999742     48899955 579999999999997 3332  2457899999


Q ss_pred             eecCCCCCCcccEEEEEeceeeec
Q 019724           77 RSTGGCFGNSDLGEVFVPVKEMLL  100 (336)
Q Consensus        77 ~d~d~~~~d~~LG~~~v~L~~l~~  100 (336)
                      ||+|...++++||++.|+|+++..
T Consensus        88 ~d~d~~~~~~~lG~~~i~l~~l~~  111 (122)
T cd08381          88 WSHDSLVENEFLGGVCIPLKKLDL  111 (122)
T ss_pred             EeCCCCcCCcEEEEEEEecccccc
Confidence            999777789999999999999886

There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permut

>cd04027 C2B_Munc13 C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins

Probab=99.79  E-value=1.8e-18  Score=143.12  Aligned_cols=113  Identities=18%  Similarity=0.285  Sum_probs=92.5

Q ss_pred             EEEEEEEEecCCCCCCCCCCcceEEEEEEcCcceEEEEeeCCCCCCeeeeEEEEEecchhhhcCCcEEEEEEeecCCC--
Q 019724            5 ALDITVVSASDLKTAGMFSKMNVYAVVTIFGESQTTSVARDCGVRPTWNHQMRFNIDEAAAMQNNLTIVYSIRSTGGC--   82 (336)
Q Consensus         5 ~L~V~vi~Ak~L~~~d~~g~~dPYv~v~l~~~~~kTkv~~~~t~nP~WnE~f~F~v~~~~~~~~~~~L~v~V~d~d~~--   82 (336)
                      +|+|+|++|++|...+..+++||||+|.+.....+|++++ ++.||+|||+|.|.+...     ...|.|+|||+|..  
T Consensus         2 ~L~V~vi~a~~L~~~d~~g~~DPyv~v~~~~~~~kT~~v~-~t~~P~Wne~f~f~~~~~-----~~~l~i~v~d~d~~~~   75 (127)
T cd04027           2 KISITVVCAQGLIAKDKTGTSDPYVTVQVGKTKKRTKTIP-QNLNPVWNEKFHFECHNS-----SDRIKVRVWDEDDDIK   75 (127)
T ss_pred             eEEEEEEECcCCcCCCCCCCcCcEEEEEECCEeeecceec-CCCCCccceEEEEEecCC-----CCEEEEEEEECCCCcc
Confidence            6999999999999999889999999999988789999954 589999999999988543     25799999999642  


Q ss_pred             ---------CCCcccEEEEEeceeeeccCCCCCCCCeeeeeeCC--CCCcceEEEEEE
Q 019724           83 ---------FGNSDLGEVFVPVKEMLLRSNGDDDKPMSYNITTP--GGRAKGVLNVSY  129 (336)
Q Consensus        83 ---------~~d~~LG~~~v~L~~l~~~~~~~~~~~~~~~l~~~--~g~~~G~L~lsl  129 (336)
                               ..|++||++.|+|.++..  .    ...||.|.++  ....+|+|+|+|
T Consensus        76 ~~~~~~~~~~~~~~iG~~~i~l~~~~~--~----~~~w~~L~~~~~~~~~~G~i~~~~  127 (127)
T cd04027          76 SRLKQKFTRESDDFLGQTIIEVRTLSG--E----MDVWYNLEKRTDKSAVSGAIRLHI  127 (127)
T ss_pred             cccceeccccCCCcceEEEEEhHHccC--C----CCeEEECccCCCCCcEeEEEEEEC
Confidence                     258999999999988653  1    2367777653  345799999875

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrev

>cd04010 C2B_RasA3 C2 domain second repeat present in RAS p21 protein activator 3 (RasA3)

Probab=99.79  E-value=8.7e-19  Score=148.74  Aligned_cols=106  Identities=22%  Similarity=0.333  Sum_probs=82.7

Q ss_pred             EEEEEEEEecCCCCCCCCCCcceEEEEEEcC-----cceEEEEeeCCCCCCeeeeEEEEEecch-----------hhhcC
Q 019724            5 ALDITVVSASDLKTAGMFSKMNVYAVVTIFG-----ESQTTSVARDCGVRPTWNHQMRFNIDEA-----------AAMQN   68 (336)
Q Consensus         5 ~L~V~vi~Ak~L~~~d~~g~~dPYv~v~l~~-----~~~kTkv~~~~t~nP~WnE~f~F~v~~~-----------~~~~~   68 (336)
                      +|+|+|++|++|..  ..+.+||||+|++..     .++||++++ +++||+|||+|.|.+...           ..+..
T Consensus         1 kL~V~Vi~ArnL~~--~~g~sDPYV~V~l~~~~~k~~~~kT~v~~-~t~nP~wNE~F~F~v~~~~~~~~~~~~~~~~~~~   77 (148)
T cd04010           1 KLSVRVIECSDLAL--KNGTCDPYASVTLIYSNKKQDTKRTKVKK-KTNNPQFDEAFYFDVTIDSSPEKKQFEMPEEDAE   77 (148)
T ss_pred             CEEEEEEeCcCCCC--CCCCCCceEEEEEeCCcccCcccCCccEe-CCCCCccceEEEEEEecccccccccccCCccccc
Confidence            58999999999987  468899999999987     458999955 589999999999999511           10112


Q ss_pred             CcEEEEEEeecCCCCCCcccEEEEEeceeeeccCCCCCCCCeeeeeeC
Q 019724           69 NLTIVYSIRSTGGCFGNSDLGEVFVPVKEMLLRSNGDDDKPMSYNITT  116 (336)
Q Consensus        69 ~~~L~v~V~d~d~~~~d~~LG~~~v~L~~l~~~~~~~~~~~~~~~l~~  116 (336)
                      ...|.|+|||++...+|+|||++.|+|.+|... ...  ...||.|..
T Consensus        78 ~~~L~i~V~d~~~~~~ddfLG~v~i~l~~l~~~-~~~--~~~W~~L~~  122 (148)
T cd04010          78 KLELRVDLWHASMGGGDVFLGEVRIPLRGLDLQ-AGS--HQAWYFLQP  122 (148)
T ss_pred             EEEEEEEEEcCCCCCCCceeEEEEEeccccccc-CCc--CcceeecCC
Confidence            367999999996666899999999999998862 111  346777754

RasA3 are members of GTPase activating protein 1 (GAP1), a Ras-specific GAP, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA3 contains an N-terminal C2 domain, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain

>cd08373 C2A_Ferlin C2 domain first repeat in Ferlin

Probab=99.79  E-value=2.4e-18  Score=142.17  Aligned_cols=120  Identities=18%  Similarity=0.302  Sum_probs=98.1

Q ss_pred             EEEecCCCCCCCCCCcceEEEEEEcCcceEEEEeeCCCCCCeeeeEEEEEecchhhhcCCcEEEEEEeecCCCCCCcccE
Q 019724           10 VVSASDLKTAGMFSKMNVYAVVTIFGESQTTSVARDCGVRPTWNHQMRFNIDEAAAMQNNLTIVYSIRSTGGCFGNSDLG   89 (336)
Q Consensus        10 vi~Ak~L~~~d~~g~~dPYv~v~l~~~~~kTkv~~~~t~nP~WnE~f~F~v~~~~~~~~~~~L~v~V~d~d~~~~d~~LG   89 (336)
                      |++|++|..  ..+++||||+|++....+||++++ ++.||+|||+|.|.+....  .....|+|+|||++...+|++||
T Consensus         2 vi~a~~L~~--~~g~~Dpyv~v~~~~~~~kT~v~~-~~~nP~Wne~f~f~~~~~~--~~~~~l~~~v~d~~~~~~d~~iG   76 (127)
T cd08373           2 VVSLKNLPG--LKGKGDRIAKVTFRGVKKKTRVLE-NELNPVWNETFEWPLAGSP--DPDESLEIVVKDYEKVGRNRLIG   76 (127)
T ss_pred             eEEeeCCcc--cCCCCCCEEEEEECCEeeecceeC-CCcCCcccceEEEEeCCCc--CCCCEEEEEEEECCCCCCCceEE
Confidence            789999988  678999999999998889999965 5799999999999996542  23578999999997766899999


Q ss_pred             EEEEeceeeeccCCCCCCCCeeeeeeCCCCC-cceEEEEEEEEcccCCCC
Q 019724           90 EVFVPVKEMLLRSNGDDDKPMSYNITTPGGR-AKGVLNVSYKFGPSSSAN  138 (336)
Q Consensus        90 ~~~v~L~~l~~~~~~~~~~~~~~~l~~~~g~-~~G~L~lsl~~~~~~~~~  138 (336)
                      ++.++|.++..  ...  ...|+.|.+.+++ ..|+|+|+++|.+.....
T Consensus        77 ~~~~~l~~l~~--~~~--~~~~~~L~~~~~~~~~~~l~l~~~~~~~~~~~  122 (127)
T cd08373          77 SATVSLQDLVS--EGL--LEVTEPLLDSNGRPTGATISLEVSYQPPDGAV  122 (127)
T ss_pred             EEEEEhhHccc--CCc--eEEEEeCcCCCCCcccEEEEEEEEEeCCCCcc
Confidence            99999999986  221  3467888754444 479999999999876544

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>cd08392 C2A_SLP-3 C2 domain first repeat present in Synaptotagmin-like protein 3

Probab=99.79  E-value=1.5e-18  Score=143.88  Aligned_cols=108  Identities=19%  Similarity=0.337  Sum_probs=87.2

Q ss_pred             ccEEEEEEEEecCCCCCCCC-CCcceEEEEEEcCc-----ceEEEEeeCCCCCCeeeeEEEEEecchhhhcCCcEEEEEE
Q 019724            3 SRALDITVVSASDLKTAGMF-SKMNVYAVVTIFGE-----SQTTSVARDCGVRPTWNHQMRFNIDEAAAMQNNLTIVYSI   76 (336)
Q Consensus         3 ~g~L~V~vi~Ak~L~~~d~~-g~~dPYv~v~l~~~-----~~kTkv~~~~t~nP~WnE~f~F~v~~~~~~~~~~~L~v~V   76 (336)
                      .++|+|+|++|+||...+.. +.+||||+|++...     ++||+++ +++.||+|||+|.|.|....+  ....|.|+|
T Consensus        14 ~~~L~V~V~~a~nL~~~d~~~g~~dpYVkv~llp~~~~~~k~kT~v~-~~t~nPvfNE~F~f~v~~~~l--~~~~L~v~V   90 (128)
T cd08392          14 TSCLEITIKACRNLAYGDEKKKKCHPYVKVCLLPDKSHNSKRKTAVK-KGTVNPVFNETLKYVVEADLL--SSRQLQVSV   90 (128)
T ss_pred             CCEEEEEEEecCCCCccCCCCCCCCeEEEEEEEeCCcccceeecccc-cCCCCCccceEEEEEcCHHHh--CCcEEEEEE
Confidence            57899999999999988865 89999999999753     3789985 558999999999999876532  457899999


Q ss_pred             eecCCCCCCcccEEEEEeceeeeccCCCCCCCCeeeee
Q 019724           77 RSTGGCFGNSDLGEVFVPVKEMLLRSNGDDDKPMSYNI  114 (336)
Q Consensus        77 ~d~d~~~~d~~LG~~~v~L~~l~~~~~~~~~~~~~~~l  114 (336)
                      ||+++..++++||++.|+|+++... +...+...||.|
T Consensus        91 ~~~~~~~~~~~lG~~~i~L~~~~~~-~~~~~~~~W~~l  127 (128)
T cd08392          91 WHSRTLKRRVFLGEVLIPLADWDFE-DTDSQRFLWYPL  127 (128)
T ss_pred             EeCCCCcCcceEEEEEEEcCCcccC-CCCccccceEEC
Confidence            9997767899999999999998552 222234567765

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. Little is known about the expression or localization of Slp3. The C2A domain of Slp3 is Ca2+ dependent. It has been demonstrated that Slp3 promotes dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids

>cd04039 C2_PSD C2 domain present in Phosphatidylserine decarboxylase (PSD)

Probab=99.79  E-value=9.6e-19  Score=140.83  Aligned_cols=93  Identities=17%  Similarity=0.235  Sum_probs=80.2

Q ss_pred             cEEEEEEEEecCCCCCCCC----CCcceEEEEEEcCcceEEEEeeCCCCCCeeeeEEEEEecchhhhcCCcEEEEEEeec
Q 019724            4 RALDITVVSASDLKTAGMF----SKMNVYAVVTIFGESQTTSVARDCGVRPTWNHQMRFNIDEAAAMQNNLTIVYSIRST   79 (336)
Q Consensus         4 g~L~V~vi~Ak~L~~~d~~----g~~dPYv~v~l~~~~~kTkv~~~~t~nP~WnE~f~F~v~~~~~~~~~~~L~v~V~d~   79 (336)
                      |+|.|+|++|++|+..+..    .++||||+|++....+||++++ ++.||+|||+|.|.+....   ....|.|+|||+
T Consensus         1 g~l~v~v~~A~~L~~~~~~~~~~~~~DPYv~v~~~~~~~kT~v~~-~t~nPvWne~f~f~v~~~~---~~~~L~~~V~D~   76 (108)
T cd04039           1 GVVFMEIKSITDLPPLKNMTRTGFDMDPFVIISFGRRVFRTSWRR-HTLNPVFNERLAFEVYPHE---KNFDIQFKVLDK   76 (108)
T ss_pred             CEEEEEEEeeeCCCCccccCCCCCccCceEEEEECCEeEeeeeec-CCCCCcccceEEEEEeCcc---CCCEEEEEEEEC
Confidence            6899999999999987643    3489999999988889999965 5799999999999986542   236899999999


Q ss_pred             CCCCCCcccEEEEEeceeeec
Q 019724           80 GGCFGNSDLGEVFVPVKEMLL  100 (336)
Q Consensus        80 d~~~~d~~LG~~~v~L~~l~~  100 (336)
                      |+..+|++||++.|+|++|+.
T Consensus        77 d~~~~dd~IG~~~l~L~~l~~   97 (108)
T cd04039          77 DKFSFNDYVATGSLSVQELLN   97 (108)
T ss_pred             CCCCCCcceEEEEEEHHHHHh
Confidence            777789999999999999987

PSD is involved in the biosynthesis of aminophospholipid by converting phosphatidylserine (PtdSer) to phosphatidylethanolamine (PtdEtn). There is a single C2 domain present and it is thought to confer PtdSer binding motif that is common to PKC and synaptotagmin. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM

>cd04049 C2_putative_Elicitor-responsive_gene C2 domain present in the putative elicitor-responsive gene

Probab=99.78  E-value=2.5e-18  Score=141.39  Aligned_cols=108  Identities=18%  Similarity=0.419  Sum_probs=88.8

Q ss_pred             cEEEEEEEEecCCCCCCCCCCcceEEEEEEcCcceEEEEeeCCCCCCeeeeEEEEEecchhhhcCCcEEEEEEeecCCCC
Q 019724            4 RALDITVVSASDLKTAGMFSKMNVYAVVTIFGESQTTSVARDCGVRPTWNHQMRFNIDEAAAMQNNLTIVYSIRSTGGCF   83 (336)
Q Consensus         4 g~L~V~vi~Ak~L~~~d~~g~~dPYv~v~l~~~~~kTkv~~~~t~nP~WnE~f~F~v~~~~~~~~~~~L~v~V~d~d~~~   83 (336)
                      |+|+|+|++|++|+..+..+++||||+|++....++|+++++++.||+|||+|.|.+..... .....|.|+|||++...
T Consensus         1 g~L~V~V~~A~~L~~~~~~~~~dpyv~v~~~~~~~~T~~~~~~t~nP~Wne~f~f~v~~~~~-~~~~~l~v~V~d~~~~~   79 (124)
T cd04049           1 GTLEVLLISAKGLQDTDFLGKIDPYVIIQCRTQERKSKVAKGDGRNPEWNEKFKFTVEYPGW-GGDTKLILRIMDKDNFS   79 (124)
T ss_pred             CeEEEEEEecCCCCCCCCCCCcCceEEEEECCEeeeeeEcCCCCCCCcccceEEEEecCccc-CCCCEEEEEEEECccCC
Confidence            68999999999999988889999999999988888999866568999999999999976521 12468999999996666


Q ss_pred             CCcccEEEEEeceeeeccCCCCCCCCeeeeeeC
Q 019724           84 GNSDLGEVFVPVKEMLLRSNGDDDKPMSYNITT  116 (336)
Q Consensus        84 ~d~~LG~~~v~L~~l~~~~~~~~~~~~~~~l~~  116 (336)
                      +|++||++.|+|.+++.  .+..  ..|+.|+.
T Consensus        80 ~d~~iG~~~i~l~~l~~--~~~~--~~~~~l~p  108 (124)
T cd04049          80 DDDFIGEATIHLKGLFE--EGVE--PGTAELVP  108 (124)
T ss_pred             CCCeEEEEEEEhHHhhh--CCCC--cCceEeec
Confidence            89999999999999987  2222  34566554

In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contai

>cd04041 C2A_fungal C2 domain first repeat; fungal group

Probab=99.77  E-value=2.1e-18  Score=139.38  Aligned_cols=95  Identities=17%  Similarity=0.252  Sum_probs=80.6

Q ss_pred             cEEEEEEEEecCCCCCCCC-CCcceEEEEEEcCc---ceEEEEeeCCCCCCeeeeEEEEEecchhhhcCCcEEEEEEeec
Q 019724            4 RALDITVVSASDLKTAGMF-SKMNVYAVVTIFGE---SQTTSVARDCGVRPTWNHQMRFNIDEAAAMQNNLTIVYSIRST   79 (336)
Q Consensus         4 g~L~V~vi~Ak~L~~~d~~-g~~dPYv~v~l~~~---~~kTkv~~~~t~nP~WnE~f~F~v~~~~~~~~~~~L~v~V~d~   79 (336)
                      |+|+|+|++|++|...+.. +++||||+|++...   ..||++++ ++.||+|||+|.|.+....+ .....|+|+|||+
T Consensus         1 G~L~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~~~~~~~kT~v~~-~t~nP~Wne~f~f~~~~~~~-~~~~~l~~~V~d~   78 (111)
T cd04041           1 GVLVVTIHRATDLPKADFGTGSSDPYVTASFAKFGKPLYSTRIIR-KDLNPVWEETWFVLVTPDEV-KAGERLSCRLWDS   78 (111)
T ss_pred             CEEEEEEEEeeCCCcccCCCCCCCccEEEEEccCCCccEeeeeEC-CCCCCccceeEEEEeCchhc-cCCCEEEEEEEeC
Confidence            6899999999999998887 89999999998543   38999955 57999999999998865421 1246899999999


Q ss_pred             CCCCCCcccEEEEEeceeeec
Q 019724           80 GGCFGNSDLGEVFVPVKEMLL  100 (336)
Q Consensus        80 d~~~~d~~LG~~~v~L~~l~~  100 (336)
                      |+..+|++||+++|+|.+|+.
T Consensus        79 d~~~~dd~lG~~~i~l~~l~~   99 (111)
T cd04041          79 DRFTADDRLGRVEIDLKELIE   99 (111)
T ss_pred             CCCCCCCcceEEEEEHHHHhc
Confidence            777789999999999999985

C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligan

>cd04021 C2_E3_ubiquitin_ligase C2 domain present in E3 ubiquitin ligase

Probab=99.77  E-value=6.5e-18  Score=139.45  Aligned_cols=118  Identities=25%  Similarity=0.350  Sum_probs=94.7

Q ss_pred             cEEEEEEEEecCCCCCCCCCCcceEEEEEEcCc-ceEEEEeeCCCCCCeeeeEEEEEecchhhhcCCcEEEEEEeecCCC
Q 019724            4 RALDITVVSASDLKTAGMFSKMNVYAVVTIFGE-SQTTSVARDCGVRPTWNHQMRFNIDEAAAMQNNLTIVYSIRSTGGC   82 (336)
Q Consensus         4 g~L~V~vi~Ak~L~~~d~~g~~dPYv~v~l~~~-~~kTkv~~~~t~nP~WnE~f~F~v~~~~~~~~~~~L~v~V~d~d~~   82 (336)
                      ..|+|+|++|+ |...+..+++||||+|++.+. ..||+++ +++.||+|||+|.|.+..      ...|.|+|||++..
T Consensus         2 ~~L~V~i~~a~-l~~~~~~~~~dPyv~v~~~~~~~~kT~v~-~~t~~P~Wne~f~~~~~~------~~~l~~~V~d~~~~   73 (125)
T cd04021           2 SQLQITVESAK-LKSNSKSFKPDPYVEVTVDGQPPKKTEVS-KKTSNPKWNEHFTVLVTP------QSTLEFKVWSHHTL   73 (125)
T ss_pred             ceEEEEEEeeE-CCCCCcCCCCCeEEEEEECCcccEEeeee-CCCCCCccccEEEEEeCC------CCEEEEEEEeCCCC
Confidence            47999999999 555555788999999999877 6899985 568999999999999854      26899999999776


Q ss_pred             CCCcccEEEEEeceeeeccCCCCCC-CCeeeeeeCCC---CCcceEEEEEE
Q 019724           83 FGNSDLGEVFVPVKEMLLRSNGDDD-KPMSYNITTPG---GRAKGVLNVSY  129 (336)
Q Consensus        83 ~~d~~LG~~~v~L~~l~~~~~~~~~-~~~~~~l~~~~---g~~~G~L~lsl  129 (336)
                      ..|++||+++++|.+++....+..+ .+.|+.+.+.+   +...|+|++++
T Consensus        74 ~~~~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~  124 (125)
T cd04021          74 KADVLLGEASLDLSDILKNHNGKLENVKLTLNLSSENKGSSVKVGELTVIL  124 (125)
T ss_pred             CCCcEEEEEEEEHHHhHhhcCCCccceEEEEEEEccCCCcceeeeeEEEEe
Confidence            6899999999999999874443332 33578887533   36789998876

E3 ubiquitin ligase is part of the ubiquitylation mechanism responsible for controlling surface expression of membrane proteins. The sequential action of several enzymes are involved: ubiquitin-activating enzyme E1, ubiquitin-conjugating enzyme E2, and ubiquitin-protein ligase E3 which is responsible for substrate recognition and promoting the transfer of ubiquitin to the target protein. E3 ubiquitin ligase is composed of an N-terminal C2 domain, 4 WW domains, and a HECTc domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction e

>cd08394 C2A_Munc13 C2 domain first repeat in Munc13 (mammalian uncoordinated) proteins

Probab=99.77  E-value=5.1e-18  Score=139.24  Aligned_cols=100  Identities=19%  Similarity=0.337  Sum_probs=81.2

Q ss_pred             cEEEEEEEEecCCCCCCCCCCcceEEEEEEcCcceEEEEeeCCCCCCeeeeEEEEEecchhhhcCCcEEEEEEeecCCCC
Q 019724            4 RALDITVVSASDLKTAGMFSKMNVYAVVTIFGESQTTSVARDCGVRPTWNHQMRFNIDEAAAMQNNLTIVYSIRSTGGCF   83 (336)
Q Consensus         4 g~L~V~vi~Ak~L~~~d~~g~~dPYv~v~l~~~~~kTkv~~~~t~nP~WnE~f~F~v~~~~~~~~~~~L~v~V~d~d~~~   83 (336)
                      +.|.|+|++||+|...+   ..||||+|.+++.+.+|+++++  .||+|||+|.|.+.+.     ...|+|+|||+ +.+
T Consensus         2 ~~L~V~Vv~Ar~L~~~~---~~dPYV~Ik~g~~k~kT~v~~~--~nP~WnE~F~F~~~~~-----~~~L~v~V~dk-d~~   70 (127)
T cd08394           2 SLLCVLVKKAKLDGAPD---KFNTYVTLKVQNVKSTTIAVRG--SQPCWEQDFMFEINRL-----DLGLVIELWNK-GLI   70 (127)
T ss_pred             ceEEEEEEEeeCCCCCC---CCCCeEEEEECCEEeEeeECCC--CCCceeeEEEEEEcCC-----CCEEEEEEEeC-CCc
Confidence            58999999999997655   4589999999998889998543  5999999999999654     25599999999 466


Q ss_pred             CCcccEEEEEeceeeeccCCCCCCCCeeeeeeC
Q 019724           84 GNSDLGEVFVPVKEMLLRSNGDDDKPMSYNITT  116 (336)
Q Consensus        84 ~d~~LG~~~v~L~~l~~~~~~~~~~~~~~~l~~  116 (336)
                      +||+||+++|+|+++..+...  -...||.|..
T Consensus        71 ~DD~lG~v~i~L~~v~~~~~~--~~~~Wy~L~~  101 (127)
T cd08394          71 WDTLVGTVWIPLSTIRQSNEE--GPGEWLTLDS  101 (127)
T ss_pred             CCCceEEEEEEhHHcccCCCC--CCCccEecCh
Confidence            999999999999999874321  1246777764

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi

>cd04028 C2B_RIM1alpha C2 domain second repeat contained in Rab3-interacting molecule (RIM) proteins

Probab=99.77  E-value=5.4e-18  Score=143.35  Aligned_cols=105  Identities=17%  Similarity=0.193  Sum_probs=84.5

Q ss_pred             ccEEEEEEEEecCCCCCC-CCCCcceEEEEEEcCc-----ceEEEEeeCCCCCCeeeeEEEEEecchhhhcCCcEEEEEE
Q 019724            3 SRALDITVVSASDLKTAG-MFSKMNVYAVVTIFGE-----SQTTSVARDCGVRPTWNHQMRFNIDEAAAMQNNLTIVYSI   76 (336)
Q Consensus         3 ~g~L~V~vi~Ak~L~~~d-~~g~~dPYv~v~l~~~-----~~kTkv~~~~t~nP~WnE~f~F~v~~~~~~~~~~~L~v~V   76 (336)
                      .++|+|+|++|+||...+ ..+.+||||+++|...     ++||+++ ++++||+|||+|.|.+. .    .+..|.|+|
T Consensus        28 ~~~L~V~Vi~ArnL~~~~~~~g~sDPYVKv~Llp~~~~~~k~KT~v~-kktlnPvfNE~F~f~v~-l----~~~~L~v~V  101 (146)
T cd04028          28 KGQLEVEVIRARGLVQKPGSKVLPAPYVKVYLLEGKKCIAKKKTKIA-RKTLDPLYQQQLVFDVS-P----TGKTLQVIV  101 (146)
T ss_pred             CCEEEEEEEEeeCCCcccCCCCCcCCeEEEEEECCCccccceeceec-CCCCCCccCCeEEEEEc-C----CCCEEEEEE
Confidence            578999999999998764 5678999999999753     4799995 56899999999999997 2    357899999


Q ss_pred             e-ecCCCCCCcccEEEEEeceeeeccCCCCCCCCeeeeeeCC
Q 019724           77 R-STGGCFGNSDLGEVFVPVKEMLLRSNGDDDKPMSYNITTP  117 (336)
Q Consensus        77 ~-d~d~~~~d~~LG~~~v~L~~l~~~~~~~~~~~~~~~l~~~  117 (336)
                      | |+++..++++||++.|+|+++.. ..   ....||.|...
T Consensus       102 ~~d~~~~~~~~~iG~~~i~L~~l~~-~~---~~~~Wy~L~~~  139 (146)
T cd04028         102 WGDYGRMDKKVFMGVAQILLDDLDL-SN---LVIGWYKLFPT  139 (146)
T ss_pred             EeCCCCCCCCceEEEEEEEcccccC-CC---CceeEEecCCc
Confidence            9 56555588999999999999754 12   13468888753

RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as

>cd08691 C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-like ubiquitin protein ligase-1)

Probab=99.76  E-value=1.1e-17  Score=140.28  Aligned_cols=116  Identities=22%  Similarity=0.377  Sum_probs=90.9

Q ss_pred             EEEEEEEEecCCCCCCCCCCcceEEEEEEcC-------------cceEEEEeeCCCCCCee-eeEEEEEecchhhhcCCc
Q 019724            5 ALDITVVSASDLKTAGMFSKMNVYAVVTIFG-------------ESQTTSVARDCGVRPTW-NHQMRFNIDEAAAMQNNL   70 (336)
Q Consensus         5 ~L~V~vi~Ak~L~~~d~~g~~dPYv~v~l~~-------------~~~kTkv~~~~t~nP~W-nE~f~F~v~~~~~~~~~~   70 (336)
                      ++.|++++|++|+ .+.++++||||+|++..             +.+||+++ ++++||+| ||+|.|.+...      .
T Consensus         2 ~~~~~~~~A~~L~-~~~fg~~DPyvki~~~~~~~~~~~~~~~~~~~~kT~v~-~~tlnP~W~nE~f~f~v~~~------~   73 (137)
T cd08691           2 SFSLSGLQARNLK-KGMFFNPDPYVKISIQPGKRHIFPALPHHGQECRTSIV-ENTINPVWHREQFVFVGLPT------D   73 (137)
T ss_pred             EEEEEEEEeCCCC-CccCCCCCceEEEEEECCCcccccccccccceeeeeeE-cCCCCCceEceEEEEEcCCC------C
Confidence            5789999999998 67789999999999963             24899985 56899999 99999998532      5


Q ss_pred             EEEEEEeecCCCC---CCcccEEEEEeceeeeccCCCCCCCCeeeeeeC--CCCCcceEEEEEE
Q 019724           71 TIVYSIRSTGGCF---GNSDLGEVFVPVKEMLLRSNGDDDKPMSYNITT--PGGRAKGVLNVSY  129 (336)
Q Consensus        71 ~L~v~V~d~d~~~---~d~~LG~~~v~L~~l~~~~~~~~~~~~~~~l~~--~~g~~~G~L~lsl  129 (336)
                      .|+|+|||++...   .|++||++.|+|.+|+..... .+...++.|.+  ..+.+.|+|.|.+
T Consensus        74 ~L~v~V~D~~~~~~~~~~d~lG~~~i~l~~l~~~~~~-~~~~~~~~l~k~~~~s~v~G~~~l~~  136 (137)
T cd08691          74 VLEIEVKDKFAKSRPIIRRFLGKLSIPVQRLLERHAI-GDQELSYTLGRRTPTDHVSGQLTFRF  136 (137)
T ss_pred             EEEEEEEecCCCCCccCCceEEEEEEEHHHhcccccC-CceEEEEECCcCCCCCcEEEEEEEEe
Confidence            7999999984433   279999999999999873322 22445677765  3456789998876

NEDL1 (AKA HECW1(HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1)) is a newly identified HECT-type E3 ubiquitin protein ligase highly expressed in favorable neuroblastomas. In vertebrates it is found primarily in neuronal tissues, including the spinal cord. NEDL1 is thought to normally function in the quality control of cellular proteins by eliminating misfolded proteins. This is thought to be accomplished via a mechanism analogous to that of ER-associated degradation by forming tight complexes and aggregating misfolded proteins that have escaped ubiquitin-mediated degradation. NEDL1, is composed of a C2 domain, two WW domains, and a ubiquitin ligase Hect domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are C

>cd04050 C2B_Synaptotagmin-like C2 domain second repeat present in Synaptotagmin-like proteins

Probab=99.76  E-value=3.1e-18  Score=136.97  Aligned_cols=102  Identities=19%  Similarity=0.300  Sum_probs=85.2

Q ss_pred             EEEEEEEEecCCCCCCCCCCcceEEEEEEcCcceEEEEeeCCCCCCeeeeEEEEEecchhhhcCCcEEEEEEeecCCCCC
Q 019724            5 ALDITVVSASDLKTAGMFSKMNVYAVVTIFGESQTTSVARDCGVRPTWNHQMRFNIDEAAAMQNNLTIVYSIRSTGGCFG   84 (336)
Q Consensus         5 ~L~V~vi~Ak~L~~~d~~g~~dPYv~v~l~~~~~kTkv~~~~t~nP~WnE~f~F~v~~~~~~~~~~~L~v~V~d~d~~~~   84 (336)
                      .|.|+|++|++|+..+..+.+||||+|++.+..+||+++ +++.||+|||+|.|.+....    ...|+|+|||++.   
T Consensus         1 ~L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~kT~v~-~~t~nP~Wne~f~f~v~~~~----~~~l~v~v~d~~~---   72 (105)
T cd04050           1 LLFVYLDSAKNLPLAKSTKEPSPYVELTVGKTTQKSKVK-ERTNNPVWEEGFTFLVRNPE----NQELEIEVKDDKT---   72 (105)
T ss_pred             CEEEEEeeecCCCCcccCCCCCcEEEEEECCEEEeCccc-cCCCCCcccceEEEEeCCCC----CCEEEEEEEECCC---
Confidence            389999999999998888999999999999988999995 46899999999999997642    3689999999843   


Q ss_pred             CcccEEEEEeceeeeccCCCCCCCCeeeeeeC
Q 019724           85 NSDLGEVFVPVKEMLLRSNGDDDKPMSYNITT  116 (336)
Q Consensus        85 d~~LG~~~v~L~~l~~~~~~~~~~~~~~~l~~  116 (336)
                      |++||++.|+|.+|....  ......||.|.+
T Consensus        73 ~~~iG~~~i~l~~l~~~~--~~~~~~w~~L~~  102 (105)
T cd04050          73 GKSLGSLTLPLSELLKEP--DLTLDQPFPLDN  102 (105)
T ss_pred             CCccEEEEEEHHHhhccc--cceeeeeEecCC
Confidence            889999999999998632  122346788764

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm

>cd08393 C2A_SLP-1_2 C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2

Probab=99.76  E-value=4.7e-18  Score=140.31  Aligned_cols=105  Identities=23%  Similarity=0.327  Sum_probs=85.5

Q ss_pred             ccEEEEEEEEecCCCCCCCC-CCcceEEEEEEcCc-----ceEEEEeeCCCCCCeeeeEEEEEecchhhhcCCcEEEEEE
Q 019724            3 SRALDITVVSASDLKTAGMF-SKMNVYAVVTIFGE-----SQTTSVARDCGVRPTWNHQMRFNIDEAAAMQNNLTIVYSI   76 (336)
Q Consensus         3 ~g~L~V~vi~Ak~L~~~d~~-g~~dPYv~v~l~~~-----~~kTkv~~~~t~nP~WnE~f~F~v~~~~~~~~~~~L~v~V   76 (336)
                      .++|+|+|++|+||...+.. +.+||||+|++...     ++||+++ +++.||+|||+|.|.+....+  ....|.|+|
T Consensus        14 ~~~L~V~vi~a~~L~~~d~~~g~~dpyVkv~l~p~~~~~~~~kT~v~-~~t~nP~~nE~f~f~v~~~~l--~~~~L~~~V   90 (125)
T cd08393          14 LRELHVHVIQCQDLAAADPKKQRSDPYVKTYLLPDKSNRGKRKTSVK-KKTLNPVFNETLRYKVEREEL--PTRVLNLSV   90 (125)
T ss_pred             CCEEEEEEEEeCCCCCcCCCCCCCCcEEEEEEEcCCCccccccCccC-cCCCCCccCceEEEECCHHHh--CCCEEEEEE
Confidence            46899999999999998875 78999999999643     3799995 557999999999999876532  457899999


Q ss_pred             eecCCCCCCcccEEEEEeceeeeccCCCCCCCCeeeee
Q 019724           77 RSTGGCFGNSDLGEVFVPVKEMLLRSNGDDDKPMSYNI  114 (336)
Q Consensus        77 ~d~d~~~~d~~LG~~~v~L~~l~~~~~~~~~~~~~~~l  114 (336)
                      ||+|+..++++||++.|+|.++... . .  ...||.|
T Consensus        91 ~d~~~~~~~~~iG~~~i~L~~~~~~-~-~--~~~W~~L  124 (125)
T cd08393          91 WHRDSLGRNSFLGEVEVDLGSWDWS-N-T--QPTWYPL  124 (125)
T ss_pred             EeCCCCCCCcEeEEEEEecCccccC-C-C--CcceEEC
Confidence            9997777899999999999998652 2 1  3356665

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety

>cd04043 C2_Munc13_fungal C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group

Probab=99.76  E-value=1.3e-17  Score=137.34  Aligned_cols=119  Identities=13%  Similarity=0.179  Sum_probs=95.0

Q ss_pred             EEEEEEEEecCCCCCCCCCCcceEEEEEEcCc---ceEEEEeeCCCCCCeeeeEEEEEecchhhhcCCcEEEEEEeecCC
Q 019724            5 ALDITVVSASDLKTAGMFSKMNVYAVVTIFGE---SQTTSVARDCGVRPTWNHQMRFNIDEAAAMQNNLTIVYSIRSTGG   81 (336)
Q Consensus         5 ~L~V~vi~Ak~L~~~d~~g~~dPYv~v~l~~~---~~kTkv~~~~t~nP~WnE~f~F~v~~~~~~~~~~~L~v~V~d~d~   81 (336)
                      .|+|+|++|++|+..+..+++||||+|.+...   ..||++++ ++.||+|||+|.|.+....    ...|.|+|||++.
T Consensus         2 ~~~V~v~~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~~~~-~t~~P~Wne~f~f~i~~~~----~~~L~i~v~d~d~   76 (126)
T cd04043           2 LFTIRIVRAENLKADSSNGLSDPYVTLVDTNGKRRIAKTRTIY-DTLNPRWDEEFELEVPAGE----PLWISATVWDRSF   76 (126)
T ss_pred             EEEEEEEEeECCCCCCCCCCCCceEEEEECCCCeeeecccEec-CCCCCcccceEEEEcCCCC----CCEEEEEEEECCC
Confidence            58999999999999988899999999998754   37999965 5799999999999997642    4689999999966


Q ss_pred             CCCCcccEEEEEeceeeeccCCCCCCCCeeeeeeCCCCCcceEEEEEEEEccc
Q 019724           82 CFGNSDLGEVFVPVKEMLLRSNGDDDKPMSYNITTPGGRAKGVLNVSYKFGPS  134 (336)
Q Consensus        82 ~~~d~~LG~~~v~L~~l~~~~~~~~~~~~~~~l~~~~g~~~G~L~lsl~~~~~  134 (336)
                      ...+++||+++|.|.++....++. ....|+.|..     .|+|+|.|.+...
T Consensus        77 ~~~~~~iG~~~i~l~~~~~~~~~~-~~~~w~~l~~-----~g~i~l~~~~~~~  123 (126)
T cd04043          77 VGKHDLCGRASLKLDPKRFGDDGL-PREIWLDLDT-----QGRLLLRVSMEGE  123 (126)
T ss_pred             CCCCceEEEEEEecCHHHcCCCCC-CceEEEEcCC-----CCeEEEEEEEeee
Confidence            668999999999998865422122 2346778752     6899999888653

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synap

>cd04011 C2B_Ferlin C2 domain second repeat in Ferlin

Probab=99.76  E-value=7.6e-18  Score=135.98  Aligned_cols=105  Identities=17%  Similarity=0.142  Sum_probs=83.9

Q ss_pred             EEEEEEEEecCCCCCCCCCCcceEEEEEEcCcceEEEEeeCCCCCCeeeeEEEEEecchhhhcCCcEEEEEEeecCCCCC
Q 019724            5 ALDITVVSASDLKTAGMFSKMNVYAVVTIFGESQTTSVARDCGVRPTWNHQMRFNIDEAAAMQNNLTIVYSIRSTGGCFG   84 (336)
Q Consensus         5 ~L~V~vi~Ak~L~~~d~~g~~dPYv~v~l~~~~~kTkv~~~~t~nP~WnE~f~F~v~~~~~~~~~~~L~v~V~d~d~~~~   84 (336)
                      .|+|+|++|++|.    .+++||||+|++.++++||+++ +++.||+|||+|.|.+.....+..+..|+|+|||++...+
T Consensus         5 ~l~V~v~~a~~L~----~~~~dpyv~v~~~~~~~kT~~~-~~t~nP~wne~f~f~~~~~~~~l~~~~l~i~V~d~~~~~~   79 (111)
T cd04011           5 QVRVRVIEARQLV----GGNIDPVVKVEVGGQKKYTSVK-KGTNCPFYNEYFFFNFHESPDELFDKIIKISVYDSRSLRS   79 (111)
T ss_pred             EEEEEEEEcccCC----CCCCCCEEEEEECCEeeeeeEE-eccCCCccccEEEEecCCCHHHHhcCeEEEEEEcCccccc
Confidence            5899999999998    4679999999999988999995 4579999999999998554323335689999999966668


Q ss_pred             CcccEEEEEeceeeeccCCCCCCCCeeeeee
Q 019724           85 NSDLGEVFVPVKEMLLRSNGDDDKPMSYNIT  115 (336)
Q Consensus        85 d~~LG~~~v~L~~l~~~~~~~~~~~~~~~l~  115 (336)
                      |++||+++|+|+++...... .....|+.|.
T Consensus        80 ~~~iG~~~i~l~~v~~~~~~-~~~~~w~~L~  109 (111)
T cd04011          80 DTLIGSFKLDVGTVYDQPDH-AFLRKWLLLT  109 (111)
T ss_pred             CCccEEEEECCccccCCCCC-cceEEEEEee
Confidence            99999999999999763221 1134577775

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme

>cd04029 C2A_SLP-4_5 C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5

Probab=99.76  E-value=8.9e-18  Score=138.67  Aligned_cols=96  Identities=19%  Similarity=0.306  Sum_probs=80.7

Q ss_pred             CccEEEEEEEEecCCCCCCC-CCCcceEEEEEEcCc-----ceEEEEeeCCCCCCeeeeEEEEEecchhhhcCCcEEEEE
Q 019724            2 GSRALDITVVSASDLKTAGM-FSKMNVYAVVTIFGE-----SQTTSVARDCGVRPTWNHQMRFNIDEAAAMQNNLTIVYS   75 (336)
Q Consensus         2 ~~g~L~V~vi~Ak~L~~~d~-~g~~dPYv~v~l~~~-----~~kTkv~~~~t~nP~WnE~f~F~v~~~~~~~~~~~L~v~   75 (336)
                      ..++|+|+|++|++|...+. .+++||||+|++...     ++||+++ ++++||+|||+|.|.|....+  .+..|.|+
T Consensus        13 ~~~~L~V~Vi~a~~L~~~~~~~~~~DpyVkv~l~p~~~~~~~~kT~v~-~~t~nP~wnE~f~f~i~~~~l--~~~~L~~~   89 (125)
T cd04029          13 KTQSLNVHVKECRNLAYGDEAKKRSNPYVKTYLLPDKSRQSKRKTSIK-RNTTNPVYNETLKYSISHSQL--ETRTLQLS   89 (125)
T ss_pred             CCCeEEEEEEEecCCCccCCCCCCCCcEEEEEEEcCCccccceEeeee-eCCCCCcccceEEEECCHHHh--CCCEEEEE
Confidence            35789999999999987764 478999999999642     3789985 458999999999999976532  34689999


Q ss_pred             EeecCCCCCCcccEEEEEeceeeec
Q 019724           76 IRSTGGCFGNSDLGEVFVPVKEMLL  100 (336)
Q Consensus        76 V~d~d~~~~d~~LG~~~v~L~~l~~  100 (336)
                      |||+|...++++||++.|+|.++..
T Consensus        90 V~d~~~~~~~~~lG~~~i~l~~~~~  114 (125)
T cd04029          90 VWHYDRFGRNTFLGEVEIPLDSWNF  114 (125)
T ss_pred             EEECCCCCCCcEEEEEEEeCCcccc
Confidence            9999777789999999999999876

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp4/granuphilin promotes dense-core vesicle exocytosis. The C2A domain of Slp4 is Ca2+ dependent. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2

>cd08388 C2A_Synaptotagmin-4-11 C2A domain first repeat present in Synaptotagmins 4 and 11

Probab=99.75  E-value=1.2e-17  Score=138.53  Aligned_cols=107  Identities=21%  Similarity=0.324  Sum_probs=83.8

Q ss_pred             ccEEEEEEEEecCCCCCCCC-CCcceEEEEEEcCc---ceEEEEeeCCCCCCeeeeEEEE-EecchhhhcCCcEEEEEEe
Q 019724            3 SRALDITVVSASDLKTAGMF-SKMNVYAVVTIFGE---SQTTSVARDCGVRPTWNHQMRF-NIDEAAAMQNNLTIVYSIR   77 (336)
Q Consensus         3 ~g~L~V~vi~Ak~L~~~d~~-g~~dPYv~v~l~~~---~~kTkv~~~~t~nP~WnE~f~F-~v~~~~~~~~~~~L~v~V~   77 (336)
                      ..+|+|+|++|++|+..+.. +.+||||+|++...   +.||++++ ++.||+|||+|.| .+....  .....|+|+||
T Consensus        15 ~~~L~V~Vi~a~~L~~~~~~~~~~DpyV~v~l~~~~~~~~kT~v~~-~t~nP~wnE~F~f~~~~~~~--~~~~~L~~~V~   91 (128)
T cd08388          15 KKALLVNIIECRDLPAMDEQSGTSDPYVKLQLLPEKEHKVKTRVLR-KTRNPVYDETFTFYGIPYNQ--LQDLSLHFAVL   91 (128)
T ss_pred             CCEEEEEEEEeECCCCCCCCCCCcCCEEEEEEeCCcCceeeccEEc-CCCCCceeeEEEEcccCHHH--hCCCEEEEEEE
Confidence            46899999999999988876 88999999998643   37999955 5899999999999 454332  23467999999


Q ss_pred             ecCCCCCCcccEEEEEeceeeeccCCCCCCCCeeeee
Q 019724           78 STGGCFGNSDLGEVFVPVKEMLLRSNGDDDKPMSYNI  114 (336)
Q Consensus        78 d~d~~~~d~~LG~~~v~L~~l~~~~~~~~~~~~~~~l  114 (336)
                      |+|+..+|++||++.|+|+++...+.+  +..+|+.+
T Consensus        92 d~d~~~~d~~lG~~~i~L~~l~~~~~~--~~~~~~~~  126 (128)
T cd08388          92 SFDRYSRDDVIGEVVCPLAGADLLNEG--ELLVSREI  126 (128)
T ss_pred             EcCCCCCCceeEEEEEeccccCCCCCc--eEEEEEec
Confidence            997777899999999999998652222  23455554

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence

>cd08688 C2_KIAA0528-like C2 domain found in the Human KIAA0528 cDNA clone

Probab=99.75  E-value=8.5e-18  Score=135.57  Aligned_cols=106  Identities=19%  Similarity=0.357  Sum_probs=86.4

Q ss_pred             EEEEEEEecCCCCCCC-CCCcceEEEEEEcCcceEEEEeeCCCCCCee-eeEEEEEecchhhhcCCcEEEEEEeecCCCC
Q 019724            6 LDITVVSASDLKTAGM-FSKMNVYAVVTIFGESQTTSVARDCGVRPTW-NHQMRFNIDEAAAMQNNLTIVYSIRSTGGCF   83 (336)
Q Consensus         6 L~V~vi~Ak~L~~~d~-~g~~dPYv~v~l~~~~~kTkv~~~~t~nP~W-nE~f~F~v~~~~~~~~~~~L~v~V~d~d~~~   83 (336)
                      |+|+|++|++|+..+. .+.+||||+|++....+||++++ +++||+| ||+|.|.+....+  .+..|+|+|||++...
T Consensus         1 l~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~~~~kT~v~~-~~~nP~W~ne~f~f~i~~~~l--~~~~l~i~V~d~d~~~   77 (110)
T cd08688           1 LKVRVVAARDLPVMDRSSDLTDAFVEVKFGSTTYKTDVVK-KSLNPVWNSEWFRFEVDDEEL--QDEPLQIRVMDHDTYS   77 (110)
T ss_pred             CEEEEEEEECCCccccCCCCCCceEEEEECCeeEecceec-CCCCCcccCcEEEEEcChHHc--CCCeEEEEEEeCCCCC
Confidence            6899999999998874 67899999999998889999965 5799999 9999999976532  2468999999997666


Q ss_pred             CCcccEEEEEeceeeeccCCCCCCCCeeeeee
Q 019724           84 GNSDLGEVFVPVKEMLLRSNGDDDKPMSYNIT  115 (336)
Q Consensus        84 ~d~~LG~~~v~L~~l~~~~~~~~~~~~~~~l~  115 (336)
                      +|++||++.++|.+|..+.... ....||.|.
T Consensus        78 ~~~~iG~~~~~l~~l~~~~~~~-~~~~w~~l~  108 (110)
T cd08688          78 ANDAIGKVYIDLNPLLLKDSVS-QISGWFPIY  108 (110)
T ss_pred             CCCceEEEEEeHHHhcccCCcc-ccCCeEEcc
Confidence            8899999999999998732111 134677775

The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/a

>cd08387 C2A_Synaptotagmin-8 C2A domain first repeat present in Synaptotagmin 8

Probab=99.75  E-value=1.3e-17  Score=137.22  Aligned_cols=106  Identities=13%  Similarity=0.253  Sum_probs=87.1

Q ss_pred             ccEEEEEEEEecCCCCCCCCCCcceEEEEEEcCc---ceEEEEeeCCCCCCeeeeEEEEEecchhhhcCCcEEEEEEeec
Q 019724            3 SRALDITVVSASDLKTAGMFSKMNVYAVVTIFGE---SQTTSVARDCGVRPTWNHQMRFNIDEAAAMQNNLTIVYSIRST   79 (336)
Q Consensus         3 ~g~L~V~vi~Ak~L~~~d~~g~~dPYv~v~l~~~---~~kTkv~~~~t~nP~WnE~f~F~v~~~~~~~~~~~L~v~V~d~   79 (336)
                      .++|+|+|++|++|...+..+.+||||+|.+...   .+||++++ ++.||+|||+|.|.+....+  ....|.|+|||+
T Consensus        15 ~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~kT~v~~-~t~~P~wne~f~f~v~~~~l--~~~~l~i~V~d~   91 (124)
T cd08387          15 MGILNVKLIQARNLQPRDFSGTADPYCKVRLLPDRSNTKQSKIHK-KTLNPEFDESFVFEVPPQEL--PKRTLEVLLYDF   91 (124)
T ss_pred             CCEEEEEEEEeeCCCCCCCCCCCCCeEEEEEecCCCCcEeCceEc-CCCCCCcccEEEEeCCHHHh--CCCEEEEEEEEC
Confidence            4789999999999999998899999999999532   38999954 58999999999999876532  346899999999


Q ss_pred             CCCCCCcccEEEEEeceeeeccCCCCCCCCeeeeee
Q 019724           80 GGCFGNSDLGEVFVPVKEMLLRSNGDDDKPMSYNIT  115 (336)
Q Consensus        80 d~~~~d~~LG~~~v~L~~l~~~~~~~~~~~~~~~l~  115 (336)
                      |...+|++||++.|+|+++... . .  ...||.|+
T Consensus        92 ~~~~~~~~iG~~~i~l~~~~~~-~-~--~~~W~~l~  123 (124)
T cd08387          92 DQFSRDECIGVVELPLAEVDLS-E-K--LDLWRKIQ  123 (124)
T ss_pred             CCCCCCceeEEEEEecccccCC-C-C--cceEEECc
Confidence            6666899999999999999862 2 2  34677764

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involv

>cd08685 C2_RGS-like C2 domain of the Regulator Of G-Protein Signaling (RGS) family

Probab=99.75  E-value=9e-18  Score=137.49  Aligned_cols=93  Identities=18%  Similarity=0.286  Sum_probs=78.7

Q ss_pred             ccEEEEEEEEecCCCCCCCCCCcceEEEEEEcCc-----ceEEEEeeCCCCCCeeeeEEEEEecchhhhcCCcEEEEEEe
Q 019724            3 SRALDITVVSASDLKTAGMFSKMNVYAVVTIFGE-----SQTTSVARDCGVRPTWNHQMRFNIDEAAAMQNNLTIVYSIR   77 (336)
Q Consensus         3 ~g~L~V~vi~Ak~L~~~d~~g~~dPYv~v~l~~~-----~~kTkv~~~~t~nP~WnE~f~F~v~~~~~~~~~~~L~v~V~   77 (336)
                      .++|+|+|++|+||...+ .+.+||||+|+|...     ++||+++ +++.||+|||+|.|.+.....   ...|.|+||
T Consensus        11 ~~~L~V~Vi~ar~L~~~~-~g~~dpYVkv~l~p~~~~~~~~kT~v~-~~t~~P~~nE~F~f~v~~~~~---~~~l~v~V~   85 (119)
T cd08685          11 NRKLTLHVLEAKGLRSTN-SGTCNSYVKISLSPDKEVRFRQKTSTV-PDSANPLFHETFSFDVNERDY---QKRLLVTVW   85 (119)
T ss_pred             CCEEEEEEEEEECCCCCC-CCCCCeeEEEEEEeCCCCcceEeCccc-cCCCCCccccEEEEEcChHHh---CCEEEEEEE
Confidence            578999999999999888 788999999999863     3689985 458999999999999876532   346889999


Q ss_pred             ecCCCC-CCcccEEEEEeceeeec
Q 019724           78 STGGCF-GNSDLGEVFVPVKEMLL  100 (336)
Q Consensus        78 d~d~~~-~d~~LG~~~v~L~~l~~  100 (336)
                      |+++.. ++++||++.|+|.++..
T Consensus        86 ~~~~~~~~~~~lG~~~i~l~~~~~  109 (119)
T cd08685          86 NKLSKSRDSGLLGCMSFGVKSIVN  109 (119)
T ss_pred             CCCCCcCCCEEEEEEEecHHHhcc
Confidence            996655 47899999999999975

This CD contains members of the regulator of G-protein signaling (RGS) family. RGS is a GTPase activating protein which inhibits G-protein mediated signal transduction. The protein is largely cytosolic, but G-protein activation leads to translocation of this protein to the plasma membrane. A nuclear form of this protein has also been described, but its sequence has not been identified. There are multiple alternatively spliced transcript variants in this family with some members having additional domains (ex. PDZ and RGS) downstream of the C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind pho

>cd08385 C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10

Probab=99.75  E-value=1.7e-17  Score=136.41  Aligned_cols=106  Identities=22%  Similarity=0.297  Sum_probs=86.1

Q ss_pred             ccEEEEEEEEecCCCCCCCCCCcceEEEEEEcCc---ceEEEEeeCCCCCCeeeeEEEEEecchhhhcCCcEEEEEEeec
Q 019724            3 SRALDITVVSASDLKTAGMFSKMNVYAVVTIFGE---SQTTSVARDCGVRPTWNHQMRFNIDEAAAMQNNLTIVYSIRST   79 (336)
Q Consensus         3 ~g~L~V~vi~Ak~L~~~d~~g~~dPYv~v~l~~~---~~kTkv~~~~t~nP~WnE~f~F~v~~~~~~~~~~~L~v~V~d~   79 (336)
                      .++|+|+|++|++|...+..+++||||+|.+...   .+||+++ +++.||+|||+|.|.+....+  ....|+|+|||+
T Consensus        15 ~~~L~V~v~~a~~L~~~d~~~~~dpyv~v~l~~~~~~~~kT~v~-~~t~nP~wne~f~f~i~~~~l--~~~~l~~~V~d~   91 (124)
T cd08385          15 SNQLTVGIIQAADLPAMDMGGTSDPYVKVYLLPDKKKKFETKVH-RKTLNPVFNETFTFKVPYSEL--GNKTLVFSVYDF   91 (124)
T ss_pred             CCEEEEEEEEeeCCCCccCCCCCCCEEEEEEEcCCCCceecccC-cCCCCCceeeeEEEeCCHHHh--CCCEEEEEEEeC
Confidence            5789999999999999888889999999998753   3789985 457999999999999875432  246899999999


Q ss_pred             CCCCCCcccEEEEEeceeeeccCCCCCCCCeeeeee
Q 019724           80 GGCFGNSDLGEVFVPVKEMLLRSNGDDDKPMSYNIT  115 (336)
Q Consensus        80 d~~~~d~~LG~~~v~L~~l~~~~~~~~~~~~~~~l~  115 (336)
                      |+..+|++||++.|+|+++.. +..   ...|+.|.
T Consensus        92 d~~~~~~~lG~~~i~l~~~~~-~~~---~~~W~~l~  123 (124)
T cd08385          92 DRFSKHDLIGEVRVPLLTVDL-GHV---TEEWRDLE  123 (124)
T ss_pred             CCCCCCceeEEEEEecCcccC-CCC---cceEEEcc
Confidence            776689999999999999865 222   33566653

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and

>cd08680 C2_Kibra C2 domain found in Human protein Kibra

Probab=99.75  E-value=9.6e-18  Score=138.24  Aligned_cols=95  Identities=18%  Similarity=0.191  Sum_probs=81.7

Q ss_pred             ccEEEEEEEEecCCCCCCCCCCcceEEEEEEcCc------ceEEEEeeCCCCCCeeeeEEEEEecchhhhcCCcEEEEEE
Q 019724            3 SRALDITVVSASDLKTAGMFSKMNVYAVVTIFGE------SQTTSVARDCGVRPTWNHQMRFNIDEAAAMQNNLTIVYSI   76 (336)
Q Consensus         3 ~g~L~V~vi~Ak~L~~~d~~g~~dPYv~v~l~~~------~~kTkv~~~~t~nP~WnE~f~F~v~~~~~~~~~~~L~v~V   76 (336)
                      .++|+|+|++|+||...+..+.+||||+++|...      ++||++++ ++.||+|||+|.|.|....+  .+..|.|+|
T Consensus        13 ~~~L~V~V~~arnL~~~~~~~~~dpyVKv~Llp~~~~~~~~~kT~v~~-~t~nPvfnE~F~f~v~~~~L--~~~~L~~~V   89 (124)
T cd08680          13 DSSLVISVEQLRNLSALSIPENSKVYVRVALLPCSSSTSCLFRTKALE-DQDKPVFNEVFRVPISSTKL--YQKTLQVDV   89 (124)
T ss_pred             CCEEEEEEeEecCCcccccCCCCCeEEEEEEccCCCCCCceEEcCccC-CCCCCccccEEEEECCHHHh--hcCEEEEEE
Confidence            5789999999999998887788999999998742      38899854 58999999999999976543  468999999


Q ss_pred             eecCCCCCCcccEEEEEeceeeec
Q 019724           77 RSTGGCFGNSDLGEVFVPVKEMLL  100 (336)
Q Consensus        77 ~d~d~~~~d~~LG~~~v~L~~l~~  100 (336)
                      ||+++..++++||++.|.|+++..
T Consensus        90 ~~~~~~~~~~~lG~~~i~L~~~~~  113 (124)
T cd08680          90 CSVGPDQQEECLGGAQISLADFES  113 (124)
T ss_pred             EeCCCCCceeEEEEEEEEhhhccC
Confidence            999777789999999999999854

Kibra is thought to be a regulator of the Salvador (Sav)/Warts (Wts)/Hippo (Hpo) (SWH) signaling network, which limits tissue growth by inhibiting cell proliferation and promoting apoptosis. The core of the pathway consists of a MST and LATS family kinase cascade that ultimately phosphorylates and inactivates the YAP/Yorkie (Yki) transcription coactivator. The FERM domain proteins Merlin (Mer) and Expanded (Ex) are part of the upstream regulation controlling pathway mechanism. Kibra colocalizes and associates with Mer and Ex and is thought to transduce an extracellular signal via the SWH network. The apical scaffold machinery that contains Hpo, Wts, and Ex recruits Yki to the apical membrane facilitating its inhibitory phosphorlyation by Wts. Since Kibra associates with Ex and is apically located it is hypothesized that KIBRA is part of the scaffold, helps in the Hpo/Wts complex, and helps recruit Yki for inactivation that prom

>cd04045 C2C_Tricalbin-like C2 domain third repeat present in Tricalbin-like proteins

Probab=99.74  E-value=2.1e-17  Score=135.51  Aligned_cols=103  Identities=18%  Similarity=0.276  Sum_probs=86.9

Q ss_pred             cEEEEEEEEecCCCCCCCCCCcceEEEEEEcCc-ceEEEEeeCCCCCCeeeeEEEEEecchhhhcCCcEEEEEEeecCCC
Q 019724            4 RALDITVVSASDLKTAGMFSKMNVYAVVTIFGE-SQTTSVARDCGVRPTWNHQMRFNIDEAAAMQNNLTIVYSIRSTGGC   82 (336)
Q Consensus         4 g~L~V~vi~Ak~L~~~d~~g~~dPYv~v~l~~~-~~kTkv~~~~t~nP~WnE~f~F~v~~~~~~~~~~~L~v~V~d~d~~   82 (336)
                      |+|+|+|++|++|+..+..+++||||+|++... ..+|+++ +++.||+|||+|.|.+...     ...|.|+|||++..
T Consensus         1 g~L~V~Vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~kT~~~-~~t~~P~Wne~f~~~v~~~-----~~~L~v~v~d~~~~   74 (120)
T cd04045           1 GVLRLHIRKANDLKNLEGVGKIDPYVRVLVNGIVKGRTVTI-SNTLNPVWDEVLYVPVTSP-----NQKITLEVMDYEKV   74 (120)
T ss_pred             CeEEEEEEeeECCCCccCCCCcCCEEEEEECCEEeeceeEE-CCCcCCccCceEEEEecCC-----CCEEEEEEEECCCC
Confidence            689999999999999988899999999999764 4888885 5689999999999988654     36899999999766


Q ss_pred             CCCcccEEEEEeceeeeccCCCCCCCCeeeeeeCC
Q 019724           83 FGNSDLGEVFVPVKEMLLRSNGDDDKPMSYNITTP  117 (336)
Q Consensus        83 ~~d~~LG~~~v~L~~l~~~~~~~~~~~~~~~l~~~  117 (336)
                      .+|++||+++++|.+++..  .   ...||.+.+.
T Consensus        75 ~~d~~IG~~~~~l~~l~~~--~---~~~~~~~~~~  104 (120)
T cd04045          75 GKDRSLGSVEINVSDLIKK--N---EDGKYVEYDD  104 (120)
T ss_pred             CCCCeeeEEEEeHHHhhCC--C---CCceEEecCC
Confidence            6889999999999999872  1   3467777753

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.

>cd04040 C2D_Tricalbin-like C2 domain fourth repeat present in Tricalbin-like proteins

Probab=99.74  E-value=1.6e-17  Score=134.63  Aligned_cols=113  Identities=16%  Similarity=0.276  Sum_probs=92.7

Q ss_pred             EEEEEEEecCCCCCCCCCCcceEEEEEEcCcc-eEEEEeeCCCCCCeeeeEEEEEecchhhhcCCcEEEEEEeecCCCCC
Q 019724            6 LDITVVSASDLKTAGMFSKMNVYAVVTIFGES-QTTSVARDCGVRPTWNHQMRFNIDEAAAMQNNLTIVYSIRSTGGCFG   84 (336)
Q Consensus         6 L~V~vi~Ak~L~~~d~~g~~dPYv~v~l~~~~-~kTkv~~~~t~nP~WnE~f~F~v~~~~~~~~~~~L~v~V~d~d~~~~   84 (336)
                      |+|+|++|++|...+..+++||||+|.+.+.. ++|+++ +++.||+|||+|.|.+...    ....|.|+|||++...+
T Consensus         1 l~v~vi~a~~L~~~~~~~~~dpyv~v~~~~~~~~~T~v~-~~~~~P~Wne~f~~~~~~~----~~~~l~~~v~d~~~~~~   75 (115)
T cd04040           1 LTVDVISAENLPSADRNGKSDPFVKFYLNGEKVFKTKTI-KKTLNPVWNESFEVPVPSR----VRAVLKVEVYDWDRGGK   75 (115)
T ss_pred             CEEEEEeeeCCCCCCCCCCCCCeEEEEECCCcceeecee-cCCCCCcccccEEEEeccC----CCCEEEEEEEeCCCCCC
Confidence            68999999999988888899999999997644 799985 5689999999999998654    24789999999966668


Q ss_pred             CcccEEEEEeceeeeccCCCCCCCCeeeeeeCCCCCcceEEEE
Q 019724           85 NSDLGEVFVPVKEMLLRSNGDDDKPMSYNITTPGGRAKGVLNV  127 (336)
Q Consensus        85 d~~LG~~~v~L~~l~~~~~~~~~~~~~~~l~~~~g~~~G~L~l  127 (336)
                      +++||++.++|.++.. +. .  ...|+.|..+.+...|+|.|
T Consensus        76 ~~~iG~~~~~l~~l~~-~~-~--~~~~~~L~~~g~~~~~~~~~  114 (115)
T cd04040          76 DDLLGSAYIDLSDLEP-EE-T--TELTLPLDGQGGGKLGAVFL  114 (115)
T ss_pred             CCceEEEEEEHHHcCC-CC-c--EEEEEECcCCCCccCceEEc
Confidence            9999999999999876 21 1  34677887666777777754

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.

>cd00275 C2_PLC_like C2 domain present in Phosphoinositide-specific phospholipases C (PLC)

Probab=99.74  E-value=3.4e-17  Score=134.83  Aligned_cols=115  Identities=18%  Similarity=0.299  Sum_probs=92.9

Q ss_pred             EEEEEEEEecCCCCCC--CCCCcceEEEEEEc------CcceEEEEeeCCCCCCeeeeEEEEEecchhhhcCCcEEEEEE
Q 019724            5 ALDITVVSASDLKTAG--MFSKMNVYAVVTIF------GESQTTSVARDCGVRPTWNHQMRFNIDEAAAMQNNLTIVYSI   76 (336)
Q Consensus         5 ~L~V~vi~Ak~L~~~d--~~g~~dPYv~v~l~------~~~~kTkv~~~~t~nP~WnE~f~F~v~~~~~~~~~~~L~v~V   76 (336)
                      .|+|+|++|++|+..+  ..+..||||+|++.      ...+||+++.+++.||+|||+|.|.+....    ...|.|+|
T Consensus         3 ~l~v~vi~a~~L~~~~~~~~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~~P~w~e~f~f~~~~~~----~~~l~~~V   78 (128)
T cd00275           3 TLTIKIISGQQLPKPKGDKGSIVDPYVEVEIHGLPADDSAKFKTKVVKNNGFNPVWNETFEFDVTVPE----LAFLRFVV   78 (128)
T ss_pred             EEEEEEEeeecCCCCCCCCCCccCCEEEEEEEeCCCCCCCcEeeeeecCCCcCCccCCcEEEEEeCCC----eEEEEEEE
Confidence            6999999999999877  57889999999995      344899996665559999999999987442    35799999


Q ss_pred             eecCCCCCCcccEEEEEeceeeeccCCCCCCCCeeeeeeCCCC--CcceEEEEEEEE
Q 019724           77 RSTGGCFGNSDLGEVFVPVKEMLLRSNGDDDKPMSYNITTPGG--RAKGVLNVSYKF  131 (336)
Q Consensus        77 ~d~d~~~~d~~LG~~~v~L~~l~~~~~~~~~~~~~~~l~~~~g--~~~G~L~lsl~~  131 (336)
                      ||++.. +|++||++.++|++|..       ...++.|++.++  ...|.|.+++++
T Consensus        79 ~d~~~~-~~~~iG~~~~~l~~l~~-------g~~~~~l~~~~~~~~~~~~l~v~~~~  127 (128)
T cd00275          79 YDEDSG-DDDFLGQACLPLDSLRQ-------GYRHVPLLDSKGEPLELSTLFVHIDI  127 (128)
T ss_pred             EeCCCC-CCcEeEEEEEEhHHhcC-------ceEEEEecCCCCCCCcceeEEEEEEE
Confidence            999655 89999999999999854       234678876555  457889888876

PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking

>cd04009 C2B_Munc13-like C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins

Probab=99.74  E-value=1.3e-17  Score=139.10  Aligned_cols=97  Identities=14%  Similarity=0.287  Sum_probs=82.4

Q ss_pred             ccEEEEEEEEecCCCCCCCCCCcceEEEEEEcC-------cceEEEEeeCCCCCCeeeeEEEEEecchhhhcCCcEEEEE
Q 019724            3 SRALDITVVSASDLKTAGMFSKMNVYAVVTIFG-------ESQTTSVARDCGVRPTWNHQMRFNIDEAAAMQNNLTIVYS   75 (336)
Q Consensus         3 ~g~L~V~vi~Ak~L~~~d~~g~~dPYv~v~l~~-------~~~kTkv~~~~t~nP~WnE~f~F~v~~~~~~~~~~~L~v~   75 (336)
                      ..+|+|+|++|++|...+..+++||||+|++..       ..+||++++ ++.||+|||+|.|.+...........|.|+
T Consensus        15 ~~~L~V~Vi~A~~L~~~~~~g~~dPyv~v~l~~~~~~~~~~~~kT~v~~-~t~nP~wnE~f~f~i~~~~~~~~~~~l~~~   93 (133)
T cd04009          15 EQSLRVEILNARNLLPLDSNGSSDPFVKVELLPRHLFPDVPTPKTQVKK-KTLFPLFDESFEFNVPPEQCSVEGALLLFT   93 (133)
T ss_pred             CCEEEEEEEEeeCCCCcCCCCCCCCEEEEEEECCCcCccccccccccCc-CCCCCccCCEEEEEechhhcccCCCEEEEE
Confidence            468999999999999988889999999999863       348999954 579999999999999764333345789999


Q ss_pred             EeecCCCCCCcccEEEEEeceeeec
Q 019724           76 IRSTGGCFGNSDLGEVFVPVKEMLL  100 (336)
Q Consensus        76 V~d~d~~~~d~~LG~~~v~L~~l~~  100 (336)
                      |||+++..+|++||++.|+|++|..
T Consensus        94 V~d~d~~~~d~~iG~~~i~l~~l~~  118 (133)
T cd04009          94 VKDYDLLGSNDFEGEAFLPLNDIPG  118 (133)
T ss_pred             EEecCCCCCCcEeEEEEEeHHHCCc
Confidence            9999766679999999999999885

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, s

>cd04031 C2A_RIM1alpha C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins

Probab=99.74  E-value=2.3e-17  Score=135.47  Aligned_cols=105  Identities=23%  Similarity=0.305  Sum_probs=83.7

Q ss_pred             ccEEEEEEEEecCCCCCCCCCCcceEEEEEEcC-----cceEEEEeeCCCCCCeeeeEEEEEecchhhhcCCcEEEEEEe
Q 019724            3 SRALDITVVSASDLKTAGMFSKMNVYAVVTIFG-----ESQTTSVARDCGVRPTWNHQMRFNIDEAAAMQNNLTIVYSIR   77 (336)
Q Consensus         3 ~g~L~V~vi~Ak~L~~~d~~g~~dPYv~v~l~~-----~~~kTkv~~~~t~nP~WnE~f~F~v~~~~~~~~~~~L~v~V~   77 (336)
                      .++|+|+|++|++|...+..+.+||||+|++..     ..+||+++ +++.||+|||+|.|.+.... +.....|.|+||
T Consensus        15 ~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~-~~t~nP~wne~f~f~~~~~~-~l~~~~l~~~V~   92 (125)
T cd04031          15 TSQLIVTVLQARDLPPRDDGSLRNPYVKVYLLPDRSEKSKRRTKTV-KKTLNPEWNQTFEYSNVRRE-TLKERTLEVTVW   92 (125)
T ss_pred             CCEEEEEEEEecCCCCcCCCCCCCCEEEEEEccCCCcccccccccc-CCCCCCccccEEEEcccCHH-HhCCCEEEEEEE
Confidence            578999999999999988888999999999975     34789985 45899999999999864421 123478999999


Q ss_pred             ecCCCCCCcccEEEEEeceeeeccCCCCCCCCeeeee
Q 019724           78 STGGCFGNSDLGEVFVPVKEMLLRSNGDDDKPMSYNI  114 (336)
Q Consensus        78 d~d~~~~d~~LG~~~v~L~~l~~~~~~~~~~~~~~~l  114 (336)
                      |+++..+|++||++.|+|++...  ..   ...||.|
T Consensus        93 d~~~~~~~~~iG~~~i~l~~~~~--~~---~~~W~~L  124 (125)
T cd04031          93 DYDRDGENDFLGEVVIDLADALL--DD---EPHWYPL  124 (125)
T ss_pred             eCCCCCCCcEeeEEEEecccccc--cC---CcceEEC
Confidence            99766689999999999998433  22   2356665

RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as

>cd04030 C2C_KIAA1228 C2 domain third repeat present in uncharacterized human KIAA1228-like proteins

Probab=99.73  E-value=4.3e-17  Score=134.36  Aligned_cols=105  Identities=16%  Similarity=0.272  Sum_probs=85.0

Q ss_pred             ccEEEEEEEEecCCCCCCCCCCcceEEEEEEcC-----cceEEEEeeCCCCCCeeeeEEEEEecchhhhcCCcEEEEEEe
Q 019724            3 SRALDITVVSASDLKTAGMFSKMNVYAVVTIFG-----ESQTTSVARDCGVRPTWNHQMRFNIDEAAAMQNNLTIVYSIR   77 (336)
Q Consensus         3 ~g~L~V~vi~Ak~L~~~d~~g~~dPYv~v~l~~-----~~~kTkv~~~~t~nP~WnE~f~F~v~~~~~~~~~~~L~v~V~   77 (336)
                      .++|+|+|++|++|...+..+.+||||+|.+..     ..+||++++ ++.||+|||+|.|.+....+  ....|.|+||
T Consensus        15 ~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~-~~~nP~wne~f~f~i~~~~l--~~~~l~i~v~   91 (127)
T cd04030          15 RQKLIVTVHKCRNLPPCDSSDIPDPYVRLYLLPDKSKSTRRKTSVKK-DNLNPVFDETFEFPVSLEEL--KRRTLDVAVK   91 (127)
T ss_pred             CCEEEEEEEEEECCCCccCCCCCCceEEEEEEcCCCCCceEeccccc-CCCCCEECeEEEEecCHHHh--cCCEEEEEEE
Confidence            478999999999999999889999999999964     348999955 57999999999999876532  3468999999


Q ss_pred             ecCCC--CCCcccEEEEEeceeeeccCCCCCCCCeeeee
Q 019724           78 STGGC--FGNSDLGEVFVPVKEMLLRSNGDDDKPMSYNI  114 (336)
Q Consensus        78 d~d~~--~~d~~LG~~~v~L~~l~~~~~~~~~~~~~~~l  114 (336)
                      |++..  .+|++||++.|+|.+|.. .. .  ...||.|
T Consensus        92 ~~~~~~~~~~~~iG~~~i~l~~l~~-~~-~--~~~W~~L  126 (127)
T cd04030          92 NSKSFLSREKKLLGQVLIDLSDLDL-SK-G--FTQWYDL  126 (127)
T ss_pred             ECCcccCCCCceEEEEEEecccccc-cC-C--ccceEEC
Confidence            99654  478999999999999865 22 1  2356665

KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1

>cd04018 C2C_Ferlin C2 domain third repeat in Ferlin

Probab=99.73  E-value=2.8e-17  Score=139.89  Aligned_cols=92  Identities=21%  Similarity=0.241  Sum_probs=79.3

Q ss_pred             EEEEEEEEecCCCCCCCCC--------------CcceEEEEEEcCcceEEEEeeCCCCCCeeeeEEEEEecchhhhcCCc
Q 019724            5 ALDITVVSASDLKTAGMFS--------------KMNVYAVVTIFGESQTTSVARDCGVRPTWNHQMRFNIDEAAAMQNNL   70 (336)
Q Consensus         5 ~L~V~vi~Ak~L~~~d~~g--------------~~dPYv~v~l~~~~~kTkv~~~~t~nP~WnE~f~F~v~~~~~~~~~~   70 (336)
                      +|+|+|++|++|+.++..+              .+||||+|++.+.+.||++++ ++.||+|||+|.|.+.....   ..
T Consensus         1 ~~~V~V~~A~dLp~~d~~~~~~~~~~~~~~~~~~~DPYV~V~~~g~~~kT~v~~-~t~nPvWNE~f~f~v~~p~~---~~   76 (151)
T cd04018           1 RFIFKIYRAEDLPQMDSGIMANVKKAFLGEKKELVDPYVEVSFAGQKVKTSVKK-NSYNPEWNEQIVFPEMFPPL---CE   76 (151)
T ss_pred             CeEEEEEEeCCCCccChhhhccceeccccCCCCCcCcEEEEEECCEeeecceEc-CCCCCCcceEEEEEeeCCCc---CC
Confidence            4899999999999887443              689999999999999999965 57999999999999754321   36


Q ss_pred             EEEEEEeecCCCCCCcccEEEEEeceeeec
Q 019724           71 TIVYSIRSTGGCFGNSDLGEVFVPVKEMLL  100 (336)
Q Consensus        71 ~L~v~V~d~d~~~~d~~LG~~~v~L~~l~~  100 (336)
                      .|+|+|||+|...+|++||++.|+|.+|..
T Consensus        77 ~l~~~v~D~d~~~~dd~iG~~~l~l~~l~~  106 (151)
T cd04018          77 RIKIQIRDWDRVGNDDVIGTHFIDLSKISN  106 (151)
T ss_pred             EEEEEEEECCCCCCCCEEEEEEEeHHHhcc
Confidence            899999999777799999999999999887

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>cd08386 C2A_Synaptotagmin-7 C2A domain first repeat present in Synaptotagmin 7

Probab=99.73  E-value=4.4e-17  Score=133.99  Aligned_cols=107  Identities=15%  Similarity=0.267  Sum_probs=84.7

Q ss_pred             ccEEEEEEEEecCCCCCCCCCCcceEEEEEEcC---cceEEEEeeCCCCCCeeeeEEEEEecchhhhcCCcEEEEEEeec
Q 019724            3 SRALDITVVSASDLKTAGMFSKMNVYAVVTIFG---ESQTTSVARDCGVRPTWNHQMRFNIDEAAAMQNNLTIVYSIRST   79 (336)
Q Consensus         3 ~g~L~V~vi~Ak~L~~~d~~g~~dPYv~v~l~~---~~~kTkv~~~~t~nP~WnE~f~F~v~~~~~~~~~~~L~v~V~d~   79 (336)
                      .++|+|+|++|++|+..+..+++||||+|.+..   ...||++++ ++.||+|||+|.|.+.... ......|+|+|||+
T Consensus        15 ~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~kT~v~~-~t~~P~Wne~f~f~~~~~~-~l~~~~l~~~v~d~   92 (125)
T cd08386          15 ESTLTLKILKAVELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKR-KNLNPHWNETFLFEGFPYE-KLQQRVLYLQVLDY   92 (125)
T ss_pred             CCEEEEEEEEecCCCCccCCCCCCceEEEEECCCCCcceeeeeec-CCCCCccceeEEEcccCHH-HhCCCEEEEEEEeC
Confidence            568999999999999988889999999999843   348999954 5899999999999853321 12346799999999


Q ss_pred             CCCCCCcccEEEEEeceeeeccCCCCCCCCeeeeee
Q 019724           80 GGCFGNSDLGEVFVPVKEMLLRSNGDDDKPMSYNIT  115 (336)
Q Consensus        80 d~~~~d~~LG~~~v~L~~l~~~~~~~~~~~~~~~l~  115 (336)
                      |+..++++||++.|+|+++.. ...   ...|+.|.
T Consensus        93 d~~~~~~~iG~~~i~l~~l~~-~~~---~~~W~~l~  124 (125)
T cd08386          93 DRFSRNDPIGEVSLPLNKVDL-TEE---QTFWKDLK  124 (125)
T ss_pred             CCCcCCcEeeEEEEecccccC-CCC---cceEEecC
Confidence            776689999999999999875 221   33566653

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves

>cd08521 C2A_SLP C2 domain first repeat present in Synaptotagmin-like proteins

Probab=99.72  E-value=5.2e-17  Score=133.02  Aligned_cols=95  Identities=22%  Similarity=0.351  Sum_probs=80.5

Q ss_pred             ccEEEEEEEEecCCCCCC-CCCCcceEEEEEEcCc-----ceEEEEeeCCCCCCeeeeEEEEEecchhhhcCCcEEEEEE
Q 019724            3 SRALDITVVSASDLKTAG-MFSKMNVYAVVTIFGE-----SQTTSVARDCGVRPTWNHQMRFNIDEAAAMQNNLTIVYSI   76 (336)
Q Consensus         3 ~g~L~V~vi~Ak~L~~~d-~~g~~dPYv~v~l~~~-----~~kTkv~~~~t~nP~WnE~f~F~v~~~~~~~~~~~L~v~V   76 (336)
                      .++|+|+|++|++|...+ ..+.+||||+|++...     ..||++ ++++.||+|||+|.|.+....+  ....|.|+|
T Consensus        13 ~~~L~V~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v-~~~t~~P~wne~f~f~i~~~~l--~~~~l~i~v   89 (123)
T cd08521          13 TGSLEVHIKECRNLAYADEKKKRSNPYVKVYLLPDKSKQSKRKTSV-KKNTTNPVFNETLKYHISKSQL--ETRTLQLSV   89 (123)
T ss_pred             CCEEEEEEEEecCCCCcCCCCCCCCcEEEEEEecCCCcCceeeccc-cCCCCCCcccceEEEeCCHHHh--CCCEEEEEE
Confidence            578999999999999888 6789999999998532     378998 4568999999999999876532  346899999


Q ss_pred             eecCCCCCCcccEEEEEeceeeec
Q 019724           77 RSTGGCFGNSDLGEVFVPVKEMLL  100 (336)
Q Consensus        77 ~d~d~~~~d~~LG~~~v~L~~l~~  100 (336)
                      ||++...++++||++.|+|.++..
T Consensus        90 ~d~~~~~~~~~iG~~~i~l~~l~~  113 (123)
T cd08521          90 WHHDRFGRNTFLGEVEIPLDSWDL  113 (123)
T ss_pred             EeCCCCcCCceeeEEEEecccccc
Confidence            999766788999999999999864

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into

>cd04032 C2_Perforin C2 domain of Perforin

Probab=99.72  E-value=3.5e-17  Score=135.34  Aligned_cols=93  Identities=20%  Similarity=0.279  Sum_probs=79.1

Q ss_pred             ccEEEEEEEEecCCCCCCCCCCcceEEEEEEcCcceEEEEeeCCCCCCeeeeEEEEEecchhhhcCCcEEEEEEeecCCC
Q 019724            3 SRALDITVVSASDLKTAGMFSKMNVYAVVTIFGESQTTSVARDCGVRPTWNHQMRFNIDEAAAMQNNLTIVYSIRSTGGC   82 (336)
Q Consensus         3 ~g~L~V~vi~Ak~L~~~d~~g~~dPYv~v~l~~~~~kTkv~~~~t~nP~WnE~f~F~v~~~~~~~~~~~L~v~V~d~d~~   82 (336)
                      .++|+|+|++|++|.. +..+++||||+|++.+..+||++++ ++.||+|||+|.|.+....   ....|+|+|||+|..
T Consensus        27 ~~~L~V~V~~A~~L~~-d~~g~~DPYVkV~~~~~~~kT~vi~-~t~nPvWNE~F~f~~~~~~---~~~~L~v~V~D~d~~  101 (127)
T cd04032          27 LATLTVTVLRATGLWG-DYFTSTDGYVKVFFGGQEKRTEVIW-NNNNPRWNATFDFGSVELS---PGGKLRFEVWDRDNG  101 (127)
T ss_pred             cEEEEEEEEECCCCCc-CcCCCCCeEEEEEECCccccCceec-CCCCCcCCCEEEEecccCC---CCCEEEEEEEeCCCC
Confidence            4789999999999984 6678899999999998889999965 5799999999999753321   247899999999776


Q ss_pred             CCCcccEEEEEeceeeec
Q 019724           83 FGNSDLGEVFVPVKEMLL  100 (336)
Q Consensus        83 ~~d~~LG~~~v~L~~l~~  100 (336)
                      .+|++||++.++|.....
T Consensus       102 s~dd~IG~~~i~l~~~~~  119 (127)
T cd04032         102 WDDDLLGTCSVVPEAGVH  119 (127)
T ss_pred             CCCCeeEEEEEEecCCce
Confidence            699999999999987664

Perforin contains a single copy of a C2 domain in its C-terminus and plays a role in lymphocyte-mediated cytotoxicity. Mutations in perforin leads to familial hemophagocytic lymphohistiocytosis type 2. The function of perforin is calcium dependent and the C2 domain is thought to confer this binding to target cell membranes. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few

>cd08690 C2_Freud-1 C2 domain found in 5' repressor element under dual repression binding protein-1 (Freud-1)

Probab=99.72  E-value=1.4e-16  Score=135.86  Aligned_cols=130  Identities=15%  Similarity=0.257  Sum_probs=97.0

Q ss_pred             EEEEEEEEecC--CCCCCCCCCcceEEEEEEc-----CcceEEEEeeCCCCCCeeeeEEEEEecchhh----hcCCcEEE
Q 019724            5 ALDITVVSASD--LKTAGMFSKMNVYAVVTIF-----GESQTTSVARDCGVRPTWNHQMRFNIDEAAA----MQNNLTIV   73 (336)
Q Consensus         5 ~L~V~vi~Ak~--L~~~d~~g~~dPYv~v~l~-----~~~~kTkv~~~~t~nP~WnE~f~F~v~~~~~----~~~~~~L~   73 (336)
                      .++|+|+.|++  |...+..+.+||||++++.     ..+.||+++ ++|+||+|||+|.|.|.....    ...+..|+
T Consensus         3 ~~el~i~~~~~~~l~~~~~~~~~DpYVk~~l~~p~~~~~k~KT~v~-k~TlnPvfNE~f~f~I~~~~~~~~R~l~~~~L~   81 (155)
T cd08690           3 SIELTIVRCIGIPLPSGWNPKDLDTYVKFEFPYPNEEPQSGKTSTI-KDTNSPEYNESFKLNINRKHRSFQRVFKRHGLK   81 (155)
T ss_pred             ceEEEEEEeeccccCCCcCCCCCCeEEEEEEecCCCCCceeecCcc-cCCCCCcccceEEEEeccccchhhhhccCCcEE
Confidence            35566666666  6666666789999999972     134899995 568999999999999965410    12346799


Q ss_pred             EEEeecCCCC-CCcccEEEEEeceeeeccCCCCCCCCeeeeeeCCCCCcceEEEEEEEEcccCCCCC
Q 019724           74 YSIRSTGGCF-GNSDLGEVFVPVKEMLLRSNGDDDKPMSYNITTPGGRAKGVLNVSYKFGPSSSANN  139 (336)
Q Consensus        74 v~V~d~d~~~-~d~~LG~~~v~L~~l~~~~~~~~~~~~~~~l~~~~g~~~G~L~lsl~~~~~~~~~~  139 (336)
                      |+|||++..+ +|++||++.|+|..+....  .  ...++.|++.+....|+|+|+|++++.....+
T Consensus        82 ~~V~d~~~f~~~D~~iG~~~i~L~~l~~~~--~--~~~~~~L~~~~k~~Gg~l~v~ir~r~p~~~~~  144 (155)
T cd08690          82 FEVYHKGGFLRSDKLLGTAQVKLEPLETKC--E--IHESVDLMDGRKATGGKLEVKVRLREPLTGKQ  144 (155)
T ss_pred             EEEEeCCCcccCCCeeEEEEEEcccccccC--c--ceEEEEhhhCCCCcCCEEEEEEEecCCCccce
Confidence            9999996554 6999999999999987622  1  23578887655677899999999998665443

Freud-1 is a novel calcium-regulated repressor that negatively regulates basal 5-HT1A receptor expression in neurons. It may also play a role in the altered regulation of 5-HT1A receptors associated with anxiety or major depression. Freud-1 contains two DM-14 basic repeats, a helix-loop-helix DNA binding domain, and a C2 domain. The Freud-1 C2 domain is thought to be calcium insensitive and it lacks several acidic residues that mediate calcium binding of the PKC C2 domain. In addition, it contains a poly-basic insert that is not present in calcium-dependent C2 domains and may function as a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules tha

>cd04038 C2_ArfGAP C2 domain present in Arf GTPase Activating Proteins (GAP)

Probab=99.71  E-value=6e-17  Score=137.07  Aligned_cols=90  Identities=16%  Similarity=0.340  Sum_probs=81.1

Q ss_pred             cEEEEEEEEecCCCCCCCCCCcceEEEEEEcCcceEEEEeeCCCCCCeeeeEEEEEecchhhhcCCcEEEEEEeecCCCC
Q 019724            4 RALDITVVSASDLKTAGMFSKMNVYAVVTIFGESQTTSVARDCGVRPTWNHQMRFNIDEAAAMQNNLTIVYSIRSTGGCF   83 (336)
Q Consensus         4 g~L~V~vi~Ak~L~~~d~~g~~dPYv~v~l~~~~~kTkv~~~~t~nP~WnE~f~F~v~~~~~~~~~~~L~v~V~d~d~~~   83 (336)
                      |.|+|+|++|++|...+. +++||||+|+++....||++++ ++.||+|||+|.|.+...     ...|+|+|||++...
T Consensus         2 G~L~V~Vi~a~nL~~~d~-~~sDPYV~v~~g~~~~kT~vvk-~t~nP~WnE~f~f~i~~~-----~~~l~~~V~D~d~~~   74 (145)
T cd04038           2 GLLKVRVVRGTNLAVRDF-TSSDPYVVLTLGNQKVKTRVIK-KNLNPVWNEELTLSVPNP-----MAPLKLEVFDKDTFS   74 (145)
T ss_pred             eEEEEEEEeeECCCCCCC-CCcCcEEEEEECCEEEEeeeEc-CCCCCeecccEEEEecCC-----CCEEEEEEEECCCCC
Confidence            789999999999998887 8899999999999889999965 589999999999999764     378999999997666


Q ss_pred             CCcccEEEEEeceeeec
Q 019724           84 GNSDLGEVFVPVKEMLL  100 (336)
Q Consensus        84 ~d~~LG~~~v~L~~l~~  100 (336)
                      +|++||+++++|.+|+.
T Consensus        75 ~dd~iG~a~i~l~~l~~   91 (145)
T cd04038          75 KDDSMGEAEIDLEPLVE   91 (145)
T ss_pred             CCCEEEEEEEEHHHhhh
Confidence            89999999999999876

ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances i

>cd08389 C2A_Synaptotagmin-14_16 C2A domain first repeat present in Synaptotagmins 14 and 16

Probab=99.71  E-value=5.7e-17  Score=133.66  Aligned_cols=104  Identities=18%  Similarity=0.314  Sum_probs=83.9

Q ss_pred             ccEEEEEEEEecCCCCCCCCCCcceEEEEEEcCc---ceEEEEeeCCCCCCeeeeEEEEE-ecchhhhcCCcEEEEEEee
Q 019724            3 SRALDITVVSASDLKTAGMFSKMNVYAVVTIFGE---SQTTSVARDCGVRPTWNHQMRFN-IDEAAAMQNNLTIVYSIRS   78 (336)
Q Consensus         3 ~g~L~V~vi~Ak~L~~~d~~g~~dPYv~v~l~~~---~~kTkv~~~~t~nP~WnE~f~F~-v~~~~~~~~~~~L~v~V~d   78 (336)
                      .++|+|+|++|+||...+..+.+|+||++.+...   ++||+++ ++ .||+|||+|.|. +....  ..+.+|.|+|||
T Consensus        15 ~~~L~V~Vi~a~nL~~~~~~~~~d~yVk~~llp~~~~~~kTkv~-~~-~nP~fnE~F~f~~i~~~~--l~~~~L~~~V~~   90 (124)
T cd08389          15 ARKLTVTVIRAQDIPTKDRGGASSWQVHLVLLPSKKQRAKTKVQ-RG-PNPVFNETFTFSRVEPEE--LNNMALRFRLYG   90 (124)
T ss_pred             CCEEEEEEEEecCCCchhcCCCCCcEEEEEEccCCcceeecccc-cC-CCCcccCEEEECCCCHHH--hccCEEEEEEEE
Confidence            4689999999999999888888999999887654   3788884 44 899999999998 65543  346789999999


Q ss_pred             cCCCCCCcccEEEEEeceeeeccCCCCCCCCeeeee
Q 019724           79 TGGCFGNSDLGEVFVPVKEMLLRSNGDDDKPMSYNI  114 (336)
Q Consensus        79 ~d~~~~d~~LG~~~v~L~~l~~~~~~~~~~~~~~~l  114 (336)
                      +++..++++||++.|+|+++.. ..   ....|+.|
T Consensus        91 ~~~~~~~~~lG~~~i~L~~l~~-~~---~~~~w~~L  122 (124)
T cd08389          91 VERMRKERLIGEKVVPLSQLNL-EG---ETTVWLTL  122 (124)
T ss_pred             CCCcccCceEEEEEEeccccCC-CC---CceEEEeC
Confidence            9776689999999999999865 22   13456665

Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle

>cd04020 C2B_SLP_1-2-3-4 C2 domain second repeat present in Synaptotagmin-like proteins 1-4

Probab=99.71  E-value=8.6e-17  Score=138.68  Aligned_cols=96  Identities=17%  Similarity=0.189  Sum_probs=80.0

Q ss_pred             ccEEEEEEEEecCCCCCCCCCCcceEEEEEEcC-----cceEEEEeeCCCCCCeeeeEEEEEecchhhhcCCcEEEEEEe
Q 019724            3 SRALDITVVSASDLKTAGMFSKMNVYAVVTIFG-----ESQTTSVARDCGVRPTWNHQMRFNIDEAAAMQNNLTIVYSIR   77 (336)
Q Consensus         3 ~g~L~V~vi~Ak~L~~~d~~g~~dPYv~v~l~~-----~~~kTkv~~~~t~nP~WnE~f~F~v~~~~~~~~~~~L~v~V~   77 (336)
                      .++|+|+|++|++|...+..+.+||||+|++..     ..+||++++ ++.||+|||+|.|.+.... +.....|+|+||
T Consensus        26 ~g~L~V~Vi~A~nL~~~d~~g~~DPYVkv~l~~~~~~~~~~kT~vi~-~t~nP~WnE~f~f~~~~~~-~l~~~~L~i~V~  103 (162)
T cd04020          26 TGELHVWVKEAKNLPALKSGGTSDSFVKCYLLPDKSKKSKQKTPVVK-KSVNPVWNHTFVYDGVSPE-DLSQACLELTVW  103 (162)
T ss_pred             CceEEEEEEeeeCCCCCCCCCCCCCEEEEEEEcCCCCCcceeCCccC-CCCCCCCCCEEEEecCCHH-HhCCCEEEEEEE
Confidence            578999999999999998889999999999853     348999955 5799999999999864321 123468999999


Q ss_pred             ecCCCCCCcccEEEEEeceeeec
Q 019724           78 STGGCFGNSDLGEVFVPVKEMLL  100 (336)
Q Consensus        78 d~d~~~~d~~LG~~~v~L~~l~~  100 (336)
                      |+|...+|++||++.|.|.++..
T Consensus       104 d~d~~~~d~~lG~v~i~l~~~~~  126 (162)
T cd04020         104 DHDKLSSNDFLGGVRLGLGTGKS  126 (162)
T ss_pred             eCCCCCCCceEEEEEEeCCcccc
Confidence            99776679999999999999875

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involvin

>cd08390 C2A_Synaptotagmin-15-17 C2A domain first repeat present in Synaptotagmins 15 and 17

Probab=99.70  E-value=2e-16  Score=129.61  Aligned_cols=105  Identities=14%  Similarity=0.239  Sum_probs=84.4

Q ss_pred             ccEEEEEEEEecCCCCCC-CCCCcceEEEEEEcC---cceEEEEeeCCCCCCeeeeEEEEEecchhhhcCCcEEEEEEee
Q 019724            3 SRALDITVVSASDLKTAG-MFSKMNVYAVVTIFG---ESQTTSVARDCGVRPTWNHQMRFNIDEAAAMQNNLTIVYSIRS   78 (336)
Q Consensus         3 ~g~L~V~vi~Ak~L~~~d-~~g~~dPYv~v~l~~---~~~kTkv~~~~t~nP~WnE~f~F~v~~~~~~~~~~~L~v~V~d   78 (336)
                      .++|+|+|++|++|...+ ..+.+||||+|++..   ...||+++ +++.||+|||+|.|++....+  ....|.|+|||
T Consensus        13 ~~~L~V~v~~a~~L~~~~~~~~~~dpyV~v~l~~~~~~~~~T~v~-~~~~~P~wne~f~f~i~~~~l--~~~~l~i~v~d   89 (123)
T cd08390          13 EEQLTVSLIKARNLPPRTKDVAHCDPFVKVCLLPDERRSLQSKVK-RKTQNPNFDETFVFQVSFKEL--QRRTLRLSVYD   89 (123)
T ss_pred             CCEEEEEEEEecCCCCccCCCCCCCcEEEEEEeeCCCCceEeeeE-cCCCCCccceEEEEEcCHHHh--cccEEEEEEEE
Confidence            568999999999999887 578899999999853   23788884 568999999999999876532  23689999999


Q ss_pred             cCCCCCCcccEEEEEeceeeeccCCCCCCCCeeeee
Q 019724           79 TGGCFGNSDLGEVFVPVKEMLLRSNGDDDKPMSYNI  114 (336)
Q Consensus        79 ~d~~~~d~~LG~~~v~L~~l~~~~~~~~~~~~~~~l  114 (336)
                      ++...++++||++.|+|.++..  ...  ...|+.|
T Consensus        90 ~~~~~~~~~iG~~~i~L~~l~~--~~~--~~~w~~L  121 (123)
T cd08390          90 VDRFSRHCIIGHVLFPLKDLDL--VKG--GVVWRDL  121 (123)
T ss_pred             CCcCCCCcEEEEEEEeccceec--CCC--ceEEEeC
Confidence            9766679999999999999887  222  2356665

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulat

>cd04037 C2E_Ferlin C2 domain fifth repeat in Ferlin

Probab=99.70  E-value=9.4e-17  Score=132.34  Aligned_cols=118  Identities=12%  Similarity=0.170  Sum_probs=89.3

Q ss_pred             EEEEEEEEecCCCCCCCCCCcceEEEEEEcCcc--eEEEEeeCCCCCCeeeeEEEEEecchhhhcCCcEEEEEEeecCCC
Q 019724            5 ALDITVVSASDLKTAGMFSKMNVYAVVTIFGES--QTTSVARDCGVRPTWNHQMRFNIDEAAAMQNNLTIVYSIRSTGGC   82 (336)
Q Consensus         5 ~L~V~vi~Ak~L~~~d~~g~~dPYv~v~l~~~~--~kTkv~~~~t~nP~WnE~f~F~v~~~~~~~~~~~L~v~V~d~d~~   82 (336)
                      +|+|+|++|++|...+..+++||||+|++....  .||+++++ +.||+|||+|.|.+....    ...|+|+|||+|..
T Consensus         1 ~lrV~Vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~~kT~~v~~-t~nP~Wne~f~f~~~~~~----~~~L~~~V~d~d~~   75 (124)
T cd04037           1 LVRVYVVRARNLQPKDPNGKSDPYLKIKLGKKKINDRDNYIPN-TLNPVFGKMFELEATLPG----NSILKISVMDYDLL   75 (124)
T ss_pred             CEEEEEEECcCCCCCCCCCCCCcEEEEEECCeeccceeeEEEC-CCCCccceEEEEEecCCC----CCEEEEEEEECCCC
Confidence            489999999999999988999999999998765  57887554 899999999999875432    47899999999776


Q ss_pred             CCCcccEEEEEeceeeeccCCCCCCCCeeeeeeCCCCCcceEEEEEEEEcc
Q 019724           83 FGNSDLGEVFVPVKEMLLRSNGDDDKPMSYNITTPGGRAKGVLNVSYKFGP  133 (336)
Q Consensus        83 ~~d~~LG~~~v~L~~l~~~~~~~~~~~~~~~l~~~~g~~~G~L~lsl~~~~  133 (336)
                      .+|++||++.|+|.+....     ..|.+.- ...+....|.|++...+.+
T Consensus        76 ~~dd~iG~~~i~l~~~~~~-----~~~~~~~-~~~~~~~~~~~~~~~~~~~  120 (124)
T cd04037          76 GSDDLIGETVIDLEDRFFS-----KHRATCG-LPPTYEESGPNQWRDSLKP  120 (124)
T ss_pred             CCCceeEEEEEeecccccc-----hHHHhcc-CCCcccccCceecCcccCc
Confidence            7899999999999987641     1122211 2223335666666655543

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>cd08407 C2B_Synaptotagmin-13 C2 domain second repeat present in Synaptotagmin 13

Probab=99.70  E-value=1e-16  Score=134.47  Aligned_cols=92  Identities=16%  Similarity=0.270  Sum_probs=77.7

Q ss_pred             ccEEEEEEEEecCCCCCCC--CCCcceEEEEEEcCcc-----eEEEEeeCCCCCCeeeeEEEEEecchhhhcCCcEEEEE
Q 019724            3 SRALDITVVSASDLKTAGM--FSKMNVYAVVTIFGES-----QTTSVARDCGVRPTWNHQMRFNIDEAAAMQNNLTIVYS   75 (336)
Q Consensus         3 ~g~L~V~vi~Ak~L~~~d~--~g~~dPYv~v~l~~~~-----~kTkv~~~~t~nP~WnE~f~F~v~~~~~~~~~~~L~v~   75 (336)
                      .++|+|+|++|+||...+.  .+.+||||+|+|....     +||+++ ++++||+|||+|.|.|....  .++..|.|+
T Consensus        14 ~~~L~V~V~karnL~~~d~~~~~~~DpYVKv~l~~~~~k~~kkkT~v~-k~t~nPvfNE~f~F~v~~~~--L~~~~L~~~   90 (138)
T cd08407          14 ANRLLVVVIKAKNLHSDQLKLLLGIDVSVKVTLKHQNAKLKKKQTKRA-KHKINPVWNEMIMFELPSEL--LAASSVELE   90 (138)
T ss_pred             CCeEEEEEEEecCCCccccCCCCCCCeEEEEEEEcCCcccceecccee-eCCCCCccccEEEEECCHHH--hCccEEEEE
Confidence            5789999999999998873  3458999999988643     689985 56899999999999998654  345789999


Q ss_pred             EeecCCCCCCcccEEEEEecee
Q 019724           76 IRSTGGCFGNSDLGEVFVPVKE   97 (336)
Q Consensus        76 V~d~d~~~~d~~LG~~~v~L~~   97 (336)
                      |||+|+..++++||++.|.+..
T Consensus        91 V~d~d~~~~~d~iG~v~lg~~~  112 (138)
T cd08407          91 VLNQDSPGQSLPLGRCSLGLHT  112 (138)
T ss_pred             EEeCCCCcCcceeceEEecCcC
Confidence            9999887789999999999864

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recy

>cd08384 C2B_Rabphilin_Doc2 C2 domain second repeat present in Rabphilin and Double C2 domain

Probab=99.70  E-value=8.7e-17  Score=133.80  Aligned_cols=105  Identities=10%  Similarity=0.167  Sum_probs=84.4

Q ss_pred             ccEEEEEEEEecCCCCCCCCCCcceEEEEEEcCc-----ceEEEEeeCCCCCCeeeeEEEEEecchhhhcCCcEEEEEEe
Q 019724            3 SRALDITVVSASDLKTAGMFSKMNVYAVVTIFGE-----SQTTSVARDCGVRPTWNHQMRFNIDEAAAMQNNLTIVYSIR   77 (336)
Q Consensus         3 ~g~L~V~vi~Ak~L~~~d~~g~~dPYv~v~l~~~-----~~kTkv~~~~t~nP~WnE~f~F~v~~~~~~~~~~~L~v~V~   77 (336)
                      .+.|.|+|++|++|...+..+.+||||+|++...     .+||++++ ++.||+|||+|.|.+....+  ....|.|+||
T Consensus        12 ~~~L~V~Vi~a~~L~~~d~~~~~DpyV~v~l~~~~~~~~~~kT~v~~-~t~nP~wne~f~f~~~~~~l--~~~~l~~~V~   88 (133)
T cd08384          12 RRGLIVGIIRCVNLAAMDANGYSDPFVKLYLKPDAGKKSKHKTQVKK-KTLNPEFNEEFFYDIKHSDL--AKKTLEITVW   88 (133)
T ss_pred             CCEEEEEEEEEcCCCCcCCCCCCCcEEEEEEEcCCCccCCceeeeEe-ccCCCCcccEEEEECCHHHh--CCCEEEEEEE
Confidence            5789999999999999998899999999999642     37999955 58999999999999876432  3468999999


Q ss_pred             ecCCCCCCcccEEEEEeceeeeccCCCCCCCCeeeeeeC
Q 019724           78 STGGCFGNSDLGEVFVPVKEMLLRSNGDDDKPMSYNITT  116 (336)
Q Consensus        78 d~d~~~~d~~LG~~~v~L~~l~~~~~~~~~~~~~~~l~~  116 (336)
                      |+|...+|++||++.|+|.+.   ++   ....|+.+++
T Consensus        89 d~d~~~~~~~lG~~~i~l~~~---~~---~~~~W~~~l~  121 (133)
T cd08384          89 DKDIGKSNDYIGGLQLGINAK---GE---RLRHWLDCLK  121 (133)
T ss_pred             eCCCCCCccEEEEEEEecCCC---Cc---hHHHHHHHHh
Confidence            997666899999999999752   12   1335666654

Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domai

>cd08406 C2B_Synaptotagmin-12 C2 domain second repeat present in Synaptotagmin 12

Probab=99.70  E-value=1.2e-16  Score=133.93  Aligned_cols=92  Identities=17%  Similarity=0.266  Sum_probs=78.5

Q ss_pred             ccEEEEEEEEecCCCCCCCCCCcceEEEEEEcCc-----ceEEEEeeCCCCCCeeeeEEEEEecchhhhcCCcEEEEEEe
Q 019724            3 SRALDITVVSASDLKTAGMFSKMNVYAVVTIFGE-----SQTTSVARDCGVRPTWNHQMRFNIDEAAAMQNNLTIVYSIR   77 (336)
Q Consensus         3 ~g~L~V~vi~Ak~L~~~d~~g~~dPYv~v~l~~~-----~~kTkv~~~~t~nP~WnE~f~F~v~~~~~~~~~~~L~v~V~   77 (336)
                      ..+|+|+|++|+||...+..+.+||||+|+|...     ++||+|+ ++++||+|||+|.|.|....  ..+..|+|+||
T Consensus        14 ~~~L~V~Vi~A~nL~~~~~~g~~DpyVkv~l~~~~~~~~k~kT~v~-k~t~nP~~nE~f~F~v~~~~--l~~~~l~~~V~   90 (136)
T cd08406          14 AERLTVVVVKARNLVWDNGKTTADPFVKVYLLQDGRKISKKKTSVK-RDDTNPIFNEAMIFSVPAIV--LQDLSLRVTVA   90 (136)
T ss_pred             CCEEEEEEEEeeCCCCccCCCCCCeEEEEEEEeCCccccccCCccc-cCCCCCeeceeEEEECCHHH--hCCcEEEEEEE
Confidence            4689999999999999888889999999999653     3688884 56899999999999997653  34688999999


Q ss_pred             ecCCCCCCcccEEEEEecee
Q 019724           78 STGGCFGNSDLGEVFVPVKE   97 (336)
Q Consensus        78 d~d~~~~d~~LG~~~v~L~~   97 (336)
                      |+|+..++++||++.|....
T Consensus        91 ~~d~~~~~~~iG~v~lg~~~  110 (136)
T cd08406          91 ESTEDGKTPNVGHVIIGPAA  110 (136)
T ss_pred             eCCCCCCCCeeEEEEECCCC
Confidence            99877789999999997653

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 12, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 13, do not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycl

>cd08383 C2A_RasGAP C2 domain (first repeat) of Ras GTPase activating proteins (GAPs)

Probab=99.69  E-value=2.5e-16  Score=127.76  Aligned_cols=113  Identities=15%  Similarity=0.293  Sum_probs=82.8

Q ss_pred             EEEEEEEecCCCCCCCCCCcceEEEEEEcCcc-eEEEEeeCCCCCCeeeeEEEEEecchhhhcCCcEEEEEEeecCCCCC
Q 019724            6 LDITVVSASDLKTAGMFSKMNVYAVVTIFGES-QTTSVARDCGVRPTWNHQMRFNIDEAAAMQNNLTIVYSIRSTGGCFG   84 (336)
Q Consensus         6 L~V~vi~Ak~L~~~d~~g~~dPYv~v~l~~~~-~kTkv~~~~t~nP~WnE~f~F~v~~~~~~~~~~~L~v~V~d~d~~~~   84 (336)
                      |+|+|++|++|+..   +.+||||+|++.... +||++++ + .||+|||+|.|.+....  .....|.|.|||++....
T Consensus         2 L~v~vi~a~~l~~~---~~~dpyv~v~~~~~~~~kT~~~~-~-~~P~Wne~f~f~v~~~~--~~~~~l~i~v~d~~~~~~   74 (117)
T cd08383           2 LRLRILEAKNLPSK---GTRDPYCTVSLDQVEVARTKTVE-K-LNPFWGEEFVFDDPPPD--VTFFTLSFYNKDKRSKDR   74 (117)
T ss_pred             eEEEEEEecCCCcC---CCCCceEEEEECCEEeEecceEE-C-CCCcccceEEEecCCcc--ccEEEEEEEEEecccCCC
Confidence            88999999999876   789999999998754 7999854 4 89999999999997642  123678899999854435


Q ss_pred             CcccEEEEEeceeeeccCCCCCCCCeeeeeeCC--CCCcceEEEEEEEE
Q 019724           85 NSDLGEVFVPVKEMLLRSNGDDDKPMSYNITTP--GGRAKGVLNVSYKF  131 (336)
Q Consensus        85 d~~LG~~~v~L~~l~~~~~~~~~~~~~~~l~~~--~g~~~G~L~lsl~~  131 (336)
                      +.++|++.|  .++.. +..   ...||.|...  .....|+|+|+++|
T Consensus        75 ~~~~g~v~l--~~~~~-~~~---~~~w~~L~~~~~~~~~~G~l~l~~~~  117 (117)
T cd08383          75 DIVIGKVAL--SKLDL-GQG---KDEWFPLTPVDPDSEVQGSVRLRARY  117 (117)
T ss_pred             eeEEEEEEe--cCcCC-CCc---ceeEEECccCCCCCCcCceEEEEEEC
Confidence            556666554  44433 121   3367777643  34568999999986

RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain either a single C2 domain or two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2

>cd08404 C2B_Synaptotagmin-4 C2 domain second repeat present in Synaptotagmin 4

Probab=99.69  E-value=1.1e-16  Score=133.93  Aligned_cols=109  Identities=17%  Similarity=0.326  Sum_probs=85.7

Q ss_pred             ccEEEEEEEEecCCCCCCCCCCcceEEEEEEcCc-----ceEEEEeeCCCCCCeeeeEEEEEecchhhhcCCcEEEEEEe
Q 019724            3 SRALDITVVSASDLKTAGMFSKMNVYAVVTIFGE-----SQTTSVARDCGVRPTWNHQMRFNIDEAAAMQNNLTIVYSIR   77 (336)
Q Consensus         3 ~g~L~V~vi~Ak~L~~~d~~g~~dPYv~v~l~~~-----~~kTkv~~~~t~nP~WnE~f~F~v~~~~~~~~~~~L~v~V~   77 (336)
                      .++|+|+|++|++|...+..+++||||+|.+...     +.||+++ +++.||+|||+|.|.+....+  ....|+|+||
T Consensus        14 ~~~L~V~vi~a~~L~~~d~~g~~Dpyv~v~l~~~~~~~~~~kT~v~-k~t~nP~w~e~F~f~v~~~~~--~~~~l~~~v~   90 (136)
T cd08404          14 TNRLTVVVLKARHLPKMDVSGLADPYVKVNLYYGKKRISKKKTHVK-KCTLNPVFNESFVFDIPSEEL--EDISVEFLVL   90 (136)
T ss_pred             CCeEEEEEEEeeCCCccccCCCCCeEEEEEEEcCCceeeeEcCccc-cCCCCCccCceEEEECCHHHh--CCCEEEEEEE
Confidence            5689999999999999998899999999998642     2678884 568999999999999875432  4568999999


Q ss_pred             ecCCCCCCcccEEEEEeceeeeccCCCCCCCCeeeeeeCCCCC
Q 019724           78 STGGCFGNSDLGEVFVPVKEMLLRSNGDDDKPMSYNITTPGGR  120 (336)
Q Consensus        78 d~d~~~~d~~LG~~~v~L~~l~~~~~~~~~~~~~~~l~~~~g~  120 (336)
                      |+|+..++++||++.|.+.+ ..  ..   ...|+.+.+..++
T Consensus        91 d~d~~~~~~~iG~~~~~~~~-~~--~~---~~~w~~l~~~~~~  127 (136)
T cd08404          91 DSDRVTKNEVIGRLVLGPKA-SG--SG---GHHWKEVCNPPRR  127 (136)
T ss_pred             ECCCCCCCccEEEEEECCcC-CC--ch---HHHHHHHHhCCCC
Confidence            99777789999999999987 22  21   3356666543333

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling s

>cd08408 C2B_Synaptotagmin-14_16 C2 domain second repeat present in Synaptotagmins 14 and 16

Probab=99.67  E-value=3.7e-16  Score=131.25  Aligned_cols=92  Identities=15%  Similarity=0.271  Sum_probs=79.1

Q ss_pred             ccEEEEEEEEecCCCCCCCCCCcceEEEEEEcCc------ceEEEEeeCCCCCCeeeeEEEEEecchhhhcCCcEEEEEE
Q 019724            3 SRALDITVVSASDLKTAGMFSKMNVYAVVTIFGE------SQTTSVARDCGVRPTWNHQMRFNIDEAAAMQNNLTIVYSI   76 (336)
Q Consensus         3 ~g~L~V~vi~Ak~L~~~d~~g~~dPYv~v~l~~~------~~kTkv~~~~t~nP~WnE~f~F~v~~~~~~~~~~~L~v~V   76 (336)
                      .++|.|+|++|+||...+..+.+||||+|++...      ++||+++ +++.||+|||+|.|.|....  ..+..|.|+|
T Consensus        14 ~~~L~V~VikarnL~~~~~~~~~dpyVkv~llp~~~~~~~~~kT~v~-~~t~nPvfnEtF~f~i~~~~--l~~~~L~~~V   90 (138)
T cd08408          14 TGRLSVEVIKGSNFKNLAMNKAPDTYVKLTLLNSDGQEISKSKTSIR-RGQPDPEFKETFVFQVALFQ--LSEVTLMFSV   90 (138)
T ss_pred             CCeEEEEEEEecCCCccccCCCCCeeEEEEEEeCCCcceeeccceee-cCCCCCcEeeeEEEECCHHH--hCccEEEEEE
Confidence            5789999999999999888889999999999642      2689985 56899999999999997653  3457899999


Q ss_pred             eecCCCCCCcccEEEEEecee
Q 019724           77 RSTGGCFGNSDLGEVFVPVKE   97 (336)
Q Consensus        77 ~d~d~~~~d~~LG~~~v~L~~   97 (336)
                      ||.++..++++||++.|.+..
T Consensus        91 ~~~~~~~~~~~iG~v~l~~~~  111 (138)
T cd08408          91 YNKRKMKRKEMIGWFSLGLNS  111 (138)
T ss_pred             EECCCCCCCcEEEEEEECCcC
Confidence            999777789999999998864

Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle

>cd08675 C2B_RasGAP C2 domain second repeat of Ras GTPase activating proteins (GAPs)

Probab=99.67  E-value=3.4e-16  Score=131.29  Aligned_cols=106  Identities=18%  Similarity=0.272  Sum_probs=84.9

Q ss_pred             EEEEEEEecCCCCCCCCCCcceEEEEEEc----CcceEEEEeeCCCCCCeeeeEEEEEecchhh-----------hcCCc
Q 019724            6 LDITVVSASDLKTAGMFSKMNVYAVVTIF----GESQTTSVARDCGVRPTWNHQMRFNIDEAAA-----------MQNNL   70 (336)
Q Consensus         6 L~V~vi~Ak~L~~~d~~g~~dPYv~v~l~----~~~~kTkv~~~~t~nP~WnE~f~F~v~~~~~-----------~~~~~   70 (336)
                      |+|+|++|++|... ..+++||||+|++.    ...+||++++ ++.||+|||+|.|.+.....           +....
T Consensus         1 L~V~Vi~A~~L~~~-~~g~~dPyv~v~~~~~~~~~~~rT~vv~-~t~nP~Wne~f~f~~~~~~~~~~~~~~~~~~~~~~~   78 (137)
T cd08675           1 LSVRVLECRDLALK-SNGTCDPFARVTLNYSSKTDTKRTKVKK-KTNNPRFDEAFYFELTIGFSYEKKSFKVEEEDLEKS   78 (137)
T ss_pred             CEEEEEEccCCCcc-cCCCCCcEEEEEEecCCcCCeeccceee-CCCCCCcceEEEEEcccccccccccccccccccccc
Confidence            68999999999988 77899999999998    5559999965 48999999999999876421           11356


Q ss_pred             EEEEEEeecCCCCCCcccEEEEEeceeeeccCCCCCCCCeeeeeeCC
Q 019724           71 TIVYSIRSTGGCFGNSDLGEVFVPVKEMLLRSNGDDDKPMSYNITTP  117 (336)
Q Consensus        71 ~L~v~V~d~d~~~~d~~LG~~~v~L~~l~~~~~~~~~~~~~~~l~~~  117 (336)
                      .|+|+|||++...+++|||++.|+|.++..  .+.  ...||.|..+
T Consensus        79 ~l~i~V~d~~~~~~~~~IG~~~i~l~~l~~--~~~--~~~W~~L~~~  121 (137)
T cd08675          79 ELRVELWHASMVSGDDFLGEVRIPLQGLQQ--AGS--HQAWYFLQPR  121 (137)
T ss_pred             EEEEEEEcCCcCcCCcEEEEEEEehhhccC--CCc--ccceEecCCc
Confidence            899999999666589999999999999885  222  2357777653

RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin

>cd04052 C2B_Tricalbin-like C2 domain second repeat present in Tricalbin-like proteins

Probab=99.67  E-value=4.4e-16  Score=125.80  Aligned_cols=103  Identities=16%  Similarity=0.300  Sum_probs=82.1

Q ss_pred             CCCCCcceEEEEEEcCcc-eEEEEeeCCCCCCeeeeEEEEEecchhhhcCCcEEEEEEeecCCCCCCcccEEEEEeceee
Q 019724           20 GMFSKMNVYAVVTIFGES-QTTSVARDCGVRPTWNHQMRFNIDEAAAMQNNLTIVYSIRSTGGCFGNSDLGEVFVPVKEM   98 (336)
Q Consensus        20 d~~g~~dPYv~v~l~~~~-~kTkv~~~~t~nP~WnE~f~F~v~~~~~~~~~~~L~v~V~d~d~~~~d~~LG~~~v~L~~l   98 (336)
                      .++|++||||+|.+++.. .||++++ ++.||+|||+|.|.+.+..    ...|.|+|||++.. +|++||++.|+|+++
T Consensus         8 ~~~G~~dPYv~v~v~~~~~~kT~v~~-~t~nP~Wne~f~f~v~~~~----~~~l~i~v~d~~~~-~d~~iG~~~v~L~~l   81 (111)
T cd04052           8 SKTGLLSPYAELYLNGKLVYTTRVKK-KTNNPSWNASTEFLVTDRR----KSRVTVVVKDDRDR-HDPVLGSVSISLNDL   81 (111)
T ss_pred             ccCCCCCceEEEEECCEEEEEEeeec-cCCCCccCCceEEEecCcC----CCEEEEEEEECCCC-CCCeEEEEEecHHHH
Confidence            356889999999998754 7889854 5899999999999986542    47799999999655 899999999999999


Q ss_pred             eccCCCCCCCCeeeeeeCCCCCcceEEEEEEEEccc
Q 019724           99 LLRSNGDDDKPMSYNITTPGGRAKGVLNVSYKFGPS  134 (336)
Q Consensus        99 ~~~~~~~~~~~~~~~l~~~~g~~~G~L~lsl~~~~~  134 (336)
                      +.... .  ...||.|..   ...|+|+|++.|.+.
T Consensus        82 ~~~~~-~--~~~w~~L~~---~~~G~i~~~~~~~p~  111 (111)
T cd04052          82 IDATS-V--GQQWFPLSG---NGQGRIRISALWKPV  111 (111)
T ss_pred             Hhhhh-c--cceeEECCC---CCCCEEEEEEEEecC
Confidence            76222 1  236777753   468999999999763

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.

>cd04013 C2_SynGAP_like C2 domain present in Ras GTPase activating protein (GAP) family

Probab=99.66  E-value=1.1e-15  Score=128.99  Aligned_cols=117  Identities=14%  Similarity=0.192  Sum_probs=92.0

Q ss_pred             cEEEEEEEEecCCCCCCCCCCcceEEEEEEcCcc-eEEEEeeCCCCCCeeeeEEEEEecchhhhcCCcEEEEEEeecCCC
Q 019724            4 RALDITVVSASDLKTAGMFSKMNVYAVVTIFGES-QTTSVARDCGVRPTWNHQMRFNIDEAAAMQNNLTIVYSIRSTGGC   82 (336)
Q Consensus         4 g~L~V~vi~Ak~L~~~d~~g~~dPYv~v~l~~~~-~kTkv~~~~t~nP~WnE~f~F~v~~~~~~~~~~~L~v~V~d~d~~   82 (336)
                      ..|.|.|++||+|+.++     ++||+|.|+... .||+++ .++.||.|+|.|.|......     ..|+|.||+.++.
T Consensus        11 ~sL~v~V~EAk~Lp~~~-----~~Y~~i~Ld~~~vaRT~v~-~~~~nP~W~E~F~f~~~~~~-----~~l~v~v~k~~~~   79 (146)
T cd04013          11 NSLKLWIIEAKGLPPKK-----RYYCELCLDKTLYARTTSK-LKTDTLFWGEHFEFSNLPPV-----SVITVNLYRESDK   79 (146)
T ss_pred             EEEEEEEEEccCCCCcC-----CceEEEEECCEEEEEEEEE-cCCCCCcceeeEEecCCCcc-----cEEEEEEEEccCc
Confidence            47899999999998654     899999999988 599995 55789999999999764432     6799999876444


Q ss_pred             C----CCcccEEEEEeceeeeccCCCCCCCCeeeeeeCCCCC----------cceEEEEEEEEcccC
Q 019724           83 F----GNSDLGEVFVPVKEMLLRSNGDDDKPMSYNITTPGGR----------AKGVLNVSYKFGPSS  135 (336)
Q Consensus        83 ~----~d~~LG~~~v~L~~l~~~~~~~~~~~~~~~l~~~~g~----------~~G~L~lsl~~~~~~  135 (336)
                      .    ++++||++.|++.+|.. +..   ...||.|...++.          ..++|+|+++|....
T Consensus        80 ~~~~~~~~~IG~V~Ip~~~l~~-~~~---ve~Wfpl~~~~~~~~~~~~~~~~~~~~lrik~rf~~~~  142 (146)
T cd04013          80 KKKKDKSQLIGTVNIPVTDVSS-RQF---VEKWYPVSTPKGNGKSGGKEGKGESPSIRIKARYQSTR  142 (146)
T ss_pred             cccccCCcEEEEEEEEHHHhcC-CCc---ccEEEEeecCCCCCccccccccCCCCEEEEEEEEEEee
Confidence            3    57899999999999885 222   3468888764433          347999999998754

SynGAP, GAP1, RasGAP, and neurofibromin are all members of the Ras-specific GAP (GTPase-activating protein) family. SynGAP regulates the MAP kinase signaling pathway and is critical for cognition and synapse function. Mutations in this gene causes mental retardation in humans. SynGAP contains a PH-like domain, a C2 domain, and a Ras-GAP domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at leas

>cd08676 C2A_Munc13-like C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins

Probab=99.66  E-value=5.3e-16  Score=132.28  Aligned_cols=90  Identities=23%  Similarity=0.382  Sum_probs=77.1

Q ss_pred             CccEEEEEEEEecCCCCCCCCCCcceEEEEEEcCc-----------------------------ceEEEEeeCCCCCCee
Q 019724            2 GSRALDITVVSASDLKTAGMFSKMNVYAVVTIFGE-----------------------------SQTTSVARDCGVRPTW   52 (336)
Q Consensus         2 ~~g~L~V~vi~Ak~L~~~d~~g~~dPYv~v~l~~~-----------------------------~~kTkv~~~~t~nP~W   52 (336)
                      ...+|+|+|++|++|...+.++++||||+|.+...                             ..+|+++ ++++||+|
T Consensus        26 ~~~~L~V~vi~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kT~v~-~~tlnP~W  104 (153)
T cd08676          26 PIFVLKVTVIEAKGLLAKDVNGFSDPYCMLGIVPASRERNSEKSKKRKSHRKKAVLKDTVPAKSIKVTEVK-PQTLNPVW  104 (153)
T ss_pred             CeEEEEEEEEeccCCcccCCCCCCCceEEEEEcccccccccccccccccccccccccccccccccEeccee-cCCCCCcc
Confidence            35689999999999999999999999999998632                             2688884 56899999


Q ss_pred             eeEEEEEecchhhhcCCcEEEEEEeecCCCCCCcccEEEEEeceeeec
Q 019724           53 NHQMRFNIDEAAAMQNNLTIVYSIRSTGGCFGNSDLGEVFVPVKEMLL  100 (336)
Q Consensus        53 nE~f~F~v~~~~~~~~~~~L~v~V~d~d~~~~d~~LG~~~v~L~~l~~  100 (336)
                      ||+|.|.+....    ...|+|+|||++    |++||+++|+|++|..
T Consensus       105 nE~F~f~v~~~~----~~~L~i~V~D~d----d~~IG~v~i~l~~l~~  144 (153)
T cd08676         105 NETFRFEVEDVS----NDQLHLDIWDHD----DDFLGCVNIPLKDLPS  144 (153)
T ss_pred             ccEEEEEeccCC----CCEEEEEEEecC----CCeEEEEEEEHHHhCC
Confidence            999999996542    478999999994    8999999999999884

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, sy

>cd08402 C2B_Synaptotagmin-1 C2 domain second repeat present in Synaptotagmin 1

Probab=99.66  E-value=4.6e-16  Score=130.04  Aligned_cols=92  Identities=13%  Similarity=0.297  Sum_probs=77.6

Q ss_pred             ccEEEEEEEEecCCCCCCCCCCcceEEEEEEcC-----cceEEEEeeCCCCCCeeeeEEEEEecchhhhcCCcEEEEEEe
Q 019724            3 SRALDITVVSASDLKTAGMFSKMNVYAVVTIFG-----ESQTTSVARDCGVRPTWNHQMRFNIDEAAAMQNNLTIVYSIR   77 (336)
Q Consensus         3 ~g~L~V~vi~Ak~L~~~d~~g~~dPYv~v~l~~-----~~~kTkv~~~~t~nP~WnE~f~F~v~~~~~~~~~~~L~v~V~   77 (336)
                      .++|+|+|++|++|...+..+++||||+|++..     ..++|++ ++++.||+|||+|.|.+....+  ....|.|+||
T Consensus        14 ~~~l~V~Vi~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~~kT~v-~~~t~nP~wne~f~f~i~~~~l--~~~~l~~~v~   90 (136)
T cd08402          14 AGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTI-KKRTLNPYYNESFSFEVPFEQI--QKVHLIVTVL   90 (136)
T ss_pred             CCeEEEEEEEeeCCCcccCCCCCCCeEEEEEEECCcccceeeccc-eeCCCCCcccceEEEECCHHHh--CCCEEEEEEE
Confidence            578999999999999998889999999999863     2367887 4568999999999999865432  2358999999


Q ss_pred             ecCCCCCCcccEEEEEecee
Q 019724           78 STGGCFGNSDLGEVFVPVKE   97 (336)
Q Consensus        78 d~d~~~~d~~LG~~~v~L~~   97 (336)
                      |+++..+|++||++.|++..
T Consensus        91 d~~~~~~~~~iG~~~i~~~~  110 (136)
T cd08402          91 DYDRIGKNDPIGKVVLGCNA  110 (136)
T ss_pred             eCCCCCCCceeEEEEECCcc
Confidence            99776789999999999975

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are:

>cd04026 C2_PKC_alpha_gamma C2 domain in Protein Kinase C (PKC) alpha and gamma

Probab=99.66  E-value=6.2e-16  Score=128.33  Aligned_cols=105  Identities=16%  Similarity=0.245  Sum_probs=86.9

Q ss_pred             ccEEEEEEEEecCCCCCCCCCCcceEEEEEEcC-----cceEEEEeeCCCCCCeeeeEEEEEecchhhhcCCcEEEEEEe
Q 019724            3 SRALDITVVSASDLKTAGMFSKMNVYAVVTIFG-----ESQTTSVARDCGVRPTWNHQMRFNIDEAAAMQNNLTIVYSIR   77 (336)
Q Consensus         3 ~g~L~V~vi~Ak~L~~~d~~g~~dPYv~v~l~~-----~~~kTkv~~~~t~nP~WnE~f~F~v~~~~~~~~~~~L~v~V~   77 (336)
                      .++|+|+|++|++|...+..+.+||||+|.+..     ..+||++++ ++.||+|||+|.|.+....   ....|.|+||
T Consensus        12 ~~~l~v~i~~a~nL~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~-~~~~P~wne~f~~~~~~~~---~~~~l~v~v~   87 (131)
T cd04026          12 DNKLTVEVREAKNLIPMDPNGLSDPYVKLKLIPDPKNETKQKTKTIK-KTLNPVWNETFTFDLKPAD---KDRRLSIEVW   87 (131)
T ss_pred             CCEEEEEEEEeeCCCCcCCCCCCCCcEEEEEEcCCCCCceecceeec-CCCCCCccceEEEeCCchh---cCCEEEEEEE
Confidence            468999999999999888788999999999974     348999954 5799999999999986542   2468999999


Q ss_pred             ecCCCCCCcccEEEEEeceeeeccCCCCCCCCeeeeeeC
Q 019724           78 STGGCFGNSDLGEVFVPVKEMLLRSNGDDDKPMSYNITT  116 (336)
Q Consensus        78 d~d~~~~d~~LG~~~v~L~~l~~~~~~~~~~~~~~~l~~  116 (336)
                      |++...++++||+++++|+++...     ....||.|.+
T Consensus        88 d~~~~~~~~~iG~~~~~l~~l~~~-----~~~~w~~L~~  121 (131)
T cd04026          88 DWDRTTRNDFMGSLSFGVSELIKM-----PVDGWYKLLN  121 (131)
T ss_pred             ECCCCCCcceeEEEEEeHHHhCcC-----ccCceEECcC
Confidence            996666899999999999999862     1346788875

A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transd

>cd08410 C2B_Synaptotagmin-17 C2 domain second repeat present in Synaptotagmin 17

Probab=99.66  E-value=6.1e-16  Score=129.34  Aligned_cols=90  Identities=14%  Similarity=0.320  Sum_probs=75.5

Q ss_pred             ccEEEEEEEEecCCCCCCCCCCcceEEEEEEcCc-----ceEEEEeeCCCCCCeeeeEEEEEecchhhhcCCcEEEEEEe
Q 019724            3 SRALDITVVSASDLKTAGMFSKMNVYAVVTIFGE-----SQTTSVARDCGVRPTWNHQMRFNIDEAAAMQNNLTIVYSIR   77 (336)
Q Consensus         3 ~g~L~V~vi~Ak~L~~~d~~g~~dPYv~v~l~~~-----~~kTkv~~~~t~nP~WnE~f~F~v~~~~~~~~~~~L~v~V~   77 (336)
                      .+.|+|+|++|++|...+..+++||||+|++...     .+||++ ++++.||+|||+|.|.+....+  ....|.|+||
T Consensus        13 ~~~L~V~vi~a~~L~~~d~~g~~DPyV~v~l~~~~~~~~~~kT~v-~~~t~nP~wnE~F~f~i~~~~l--~~~~l~~~V~   89 (135)
T cd08410          13 AGRLNVDIIRAKQLLQTDMSQGSDPFVKIQLVHGLKLIKTKKTSC-MRGTIDPFYNESFSFKVPQEEL--ENVSLVFTVY   89 (135)
T ss_pred             CCeEEEEEEEecCCCcccCCCCCCeEEEEEEEcCCcccceEcCcc-ccCCCCCccceeEEEeCCHHHh--CCCEEEEEEE
Confidence            5789999999999999998899999999998432     278888 4568999999999999965432  2357999999


Q ss_pred             ecCCCCCCcccEEEEEec
Q 019724           78 STGGCFGNSDLGEVFVPV   95 (336)
Q Consensus        78 d~d~~~~d~~LG~~~v~L   95 (336)
                      |+|...+|++||++.|..
T Consensus        90 d~d~~~~~~~iG~~~l~~  107 (135)
T cd08410          90 GHNVKSSNDFIGRIVIGQ  107 (135)
T ss_pred             eCCCCCCCcEEEEEEEcC
Confidence            997777899999998665

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-

>KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.66  E-value=4e-17  Score=154.94  Aligned_cols=106  Identities=14%  Similarity=0.240  Sum_probs=90.4

Q ss_pred             CccEEEEEEEEecCCCCCCCCCCcceEEEEEEcCcc-----eEEEEeeCCCCCCeeeeEEEEEecchhhhcCCcEEEEEE
Q 019724            2 GSRALDITVVSASDLKTAGMFSKMNVYAVVTIFGES-----QTTSVARDCGVRPTWNHQMRFNIDEAAAMQNNLTIVYSI   76 (336)
Q Consensus         2 ~~g~L~V~vi~Ak~L~~~d~~g~~dPYv~v~l~~~~-----~kTkv~~~~t~nP~WnE~f~F~v~~~~~~~~~~~L~v~V   76 (336)
                      +...|+|+|.+|+||..+|.++.+||||++.|..+.     +||++++ +++||+|||+|+|.+...+   +++.|.|||
T Consensus       178 ~~~~l~v~i~ea~NLiPMDpNGlSDPYvk~kliPD~~~~sKqKTkTik-~~LNP~wNEtftf~Lkp~D---kdrRlsiEv  253 (683)
T KOG0696|consen  178 KRDVLTVTIKEAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTKTIK-ATLNPVWNETFTFKLKPSD---KDRRLSIEV  253 (683)
T ss_pred             cCceEEEEehhhccccccCCCCCCCcceeEEeccCCcchhhhhhhhhh-hhcCccccceeEEeccccc---ccceeEEEE
Confidence            345799999999999999999999999999997643     8999965 5899999999999997754   568899999


Q ss_pred             eecCCCCCCcccEEEEEeceeeeccCCCCCCCCeeeeeeC
Q 019724           77 RSTGGCFGNSDLGEVFVPVKEMLLRSNGDDDKPMSYNITT  116 (336)
Q Consensus        77 ~d~d~~~~d~~LG~~~v~L~~l~~~~~~~~~~~~~~~l~~  116 (336)
                      ||||+.+++||+|+..+.+++|..  +..   .-||.|.+
T Consensus       254 WDWDrTsRNDFMGslSFgisEl~K--~p~---~GWyKlLs  288 (683)
T KOG0696|consen  254 WDWDRTSRNDFMGSLSFGISELQK--APV---DGWYKLLS  288 (683)
T ss_pred             ecccccccccccceecccHHHHhh--cch---hhHHHHhh
Confidence            999999999999999999999987  322   24666654

>cd04048 C2A_Copine C2 domain first repeat in Copine

Probab=99.66  E-value=1e-15  Score=125.16  Aligned_cols=99  Identities=15%  Similarity=0.214  Sum_probs=80.1

Q ss_pred             EEEEEecCCCCCCCCCCcceEEEEEEcCcc-------eEEEEeeCCCCCCeeeeEEEEEecchhhhcCCcEEEEEEeecC
Q 019724            8 ITVVSASDLKTAGMFSKMNVYAVVTIFGES-------QTTSVARDCGVRPTWNHQMRFNIDEAAAMQNNLTIVYSIRSTG   80 (336)
Q Consensus         8 V~vi~Ak~L~~~d~~g~~dPYv~v~l~~~~-------~kTkv~~~~t~nP~WnE~f~F~v~~~~~~~~~~~L~v~V~d~d   80 (336)
                      ...++|++|...+..+++||||+|++....       +||++++ ++.||+|||+|.|.+....    ...|+|+|||+|
T Consensus         4 ~~~i~a~~L~~~d~~g~~DPyv~v~~~~~~~~~~~~~~kT~vi~-~t~nP~wne~f~f~~~~~~----~~~l~~~V~d~d   78 (120)
T cd04048           4 ELSISCRNLLDKDVLSKSDPFVVVYVKTGGSGQWVEIGRTEVIK-NNLNPDFVTTFTVDYYFEE----VQKLRFEVYDVD   78 (120)
T ss_pred             EEEEEccCCCCCCCCCCCCcEEEEEEEcCCCCceEEeccEeEeC-CCCCCCceEEEEEEEEeEe----eeEEEEEEEEec
Confidence            356899999999989999999999998764       8999965 5799999999999865432    368999999996


Q ss_pred             C----CCCCcccEEEEEeceeeeccCCCCCCCCeeeeee
Q 019724           81 G----CFGNSDLGEVFVPVKEMLLRSNGDDDKPMSYNIT  115 (336)
Q Consensus        81 ~----~~~d~~LG~~~v~L~~l~~~~~~~~~~~~~~~l~  115 (336)
                      .    ..+|++||+++++|.+|+. ...   ...++.|.
T Consensus        79 ~~~~~~~~~d~iG~~~i~l~~l~~-~~~---~~~~~~l~  113 (120)
T cd04048          79 SKSKDLSDHDFLGEAECTLGEIVS-SPG---QKLTLPLK  113 (120)
T ss_pred             CCcCCCCCCcEEEEEEEEHHHHhc-CCC---cEEEEEcc
Confidence            5    5589999999999999986 221   33566664

There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 doma

>cd08405 C2B_Synaptotagmin-7 C2 domain second repeat present in Synaptotagmin 7

Probab=99.66  E-value=5.3e-16  Score=129.66  Aligned_cols=93  Identities=17%  Similarity=0.314  Sum_probs=78.1

Q ss_pred             ccEEEEEEEEecCCCCCCCCCCcceEEEEEEcC-----cceEEEEeeCCCCCCeeeeEEEEEecchhhhcCCcEEEEEEe
Q 019724            3 SRALDITVVSASDLKTAGMFSKMNVYAVVTIFG-----ESQTTSVARDCGVRPTWNHQMRFNIDEAAAMQNNLTIVYSIR   77 (336)
Q Consensus         3 ~g~L~V~vi~Ak~L~~~d~~g~~dPYv~v~l~~-----~~~kTkv~~~~t~nP~WnE~f~F~v~~~~~~~~~~~L~v~V~   77 (336)
                      .++|+|+|++|++|...+..+++||||+|++..     ...||++++ ++.||+|||+|.|.+....+  ....|.|+||
T Consensus        14 ~~~L~v~vi~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~~~kT~v~~-~t~~P~wne~F~f~i~~~~~--~~~~l~~~v~   90 (136)
T cd08405          14 ANRITVNIIKARNLKAMDINGTSDPYVKVWLMYKDKRVEKKKTVIKK-RTLNPVFNESFIFNIPLERL--RETTLIITVM   90 (136)
T ss_pred             CCeEEEEEEEeeCCCccccCCCCCceEEEEEEeCCCccccccCccee-CCCCCcccceEEEeCCHHHh--CCCEEEEEEE
Confidence            478999999999999988889999999999843     137899854 58999999999999865432  2468999999


Q ss_pred             ecCCCCCCcccEEEEEeceee
Q 019724           78 STGGCFGNSDLGEVFVPVKEM   98 (336)
Q Consensus        78 d~d~~~~d~~LG~~~v~L~~l   98 (336)
                      |+++..+|++||++.|++.+.
T Consensus        91 d~~~~~~~~~lG~~~i~~~~~  111 (136)
T cd08405          91 DKDRLSRNDLIGKIYLGWKSG  111 (136)
T ss_pred             ECCCCCCCcEeEEEEECCccC
Confidence            997766899999999999875

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves

>cd08403 C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10

Probab=99.66  E-value=6.1e-16  Score=129.00  Aligned_cols=92  Identities=21%  Similarity=0.342  Sum_probs=77.5

Q ss_pred             CccEEEEEEEEecCCCCCCCCCCcceEEEEEEcCc-----ceEEEEeeCCCCCCeeeeEEEEEecchhhhcCCcEEEEEE
Q 019724            2 GSRALDITVVSASDLKTAGMFSKMNVYAVVTIFGE-----SQTTSVARDCGVRPTWNHQMRFNIDEAAAMQNNLTIVYSI   76 (336)
Q Consensus         2 ~~g~L~V~vi~Ak~L~~~d~~g~~dPYv~v~l~~~-----~~kTkv~~~~t~nP~WnE~f~F~v~~~~~~~~~~~L~v~V   76 (336)
                      ..++|+|+|++|++|...+..+++||||+|++...     ..||++ ++++.||+|||+|.|.+.....  ....|.|+|
T Consensus        12 ~~~~L~V~v~~A~~L~~~d~~g~~dpyvkv~l~~~~~~~~~~kT~v-~~~t~nP~wne~f~f~i~~~~~--~~~~l~~~v   88 (134)
T cd08403          12 TAGRLTLTIIKARNLKAMDITGFSDPYVKVSLMCEGRRLKKKKTSV-KKNTLNPTYNEALVFDVPPENV--DNVSLIIAV   88 (134)
T ss_pred             CCCEEEEEEEEeeCCCccccCCCCCceEEEEEEeCCcccceecCCc-ccCCCCCcccceEEEECCHHHh--CCCEEEEEE
Confidence            36799999999999999998999999999998532     368887 4568999999999999865432  235799999


Q ss_pred             eecCCCCCCcccEEEEEece
Q 019724           77 RSTGGCFGNSDLGEVFVPVK   96 (336)
Q Consensus        77 ~d~d~~~~d~~LG~~~v~L~   96 (336)
                      ||++...+|++||++.|++.
T Consensus        89 ~d~~~~~~~~~IG~~~l~~~  108 (134)
T cd08403          89 VDYDRVGHNELIGVCRVGPN  108 (134)
T ss_pred             EECCCCCCCceeEEEEECCC
Confidence            99977678999999999876

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind

>cd08692 C2B_Tac2-N C2 domain second repeat found in Tac2-N (Tandem C2 protein in Nucleus)

Probab=99.66  E-value=6.8e-16  Score=128.34  Aligned_cols=93  Identities=13%  Similarity=0.335  Sum_probs=76.3

Q ss_pred             ccEEEEEEEEecCCCCCCCCCCcceEEEEEEcCc-----ceEEEEeeCCCCCCeeeeEEEEEecchhhhcCCcEEEEEEe
Q 019724            3 SRALDITVVSASDLKTAGMFSKMNVYAVVTIFGE-----SQTTSVARDCGVRPTWNHQMRFNIDEAAAMQNNLTIVYSIR   77 (336)
Q Consensus         3 ~g~L~V~vi~Ak~L~~~d~~g~~dPYv~v~l~~~-----~~kTkv~~~~t~nP~WnE~f~F~v~~~~~~~~~~~L~v~V~   77 (336)
                      .++|+|+|++|+||+..+.....||||+|+|...     ++||++++++..||+|||+|.|+|....   .+..|.|+||
T Consensus        13 ~~rLtV~VikarnL~~~~~~~~~dpYVKV~L~~~~k~~~KkKT~v~k~t~~~P~fNEsF~Fdv~~~~---~~v~l~v~v~   89 (135)
T cd08692          13 NSRIQLQILEAQNLPSSSTPLTLSFFVKVGMFSTGGLLYKKKTRLVKSSNGQVKWGETMIFPVTQQE---HGIQFLIKLY   89 (135)
T ss_pred             CCeEEEEEEEccCCCcccCCCCCCcEEEEEEEECCCcceeecCccEECCCCCceecceEEEeCCchh---heeEEEEEEE
Confidence            5789999999999998755566799999998753     2888885543257999999999998653   2478999999


Q ss_pred             ecCCCCCCcccEEEEEeceee
Q 019724           78 STGGCFGNSDLGEVFVPVKEM   98 (336)
Q Consensus        78 d~d~~~~d~~LG~~~v~L~~l   98 (336)
                      |+|+..++++||++.|.+++.
T Consensus        90 d~~~~~~n~~IG~v~lG~~~~  110 (135)
T cd08692          90 SRSSVRRKHFLGQVWISSDSS  110 (135)
T ss_pred             eCCCCcCCceEEEEEECCccC
Confidence            997777999999999998764

Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polypho

>PLN03008 Phospholipase D delta

Probab=99.65  E-value=8.2e-16  Score=158.06  Aligned_cols=126  Identities=18%  Similarity=0.357  Sum_probs=100.0

Q ss_pred             CccEEEEEEEEecCCCCCCC------------------------------------------CCCcceEEEEEEcCcc-e
Q 019724            2 GSRALDITVVSASDLKTAGM------------------------------------------FSKMNVYAVVTIFGES-Q   38 (336)
Q Consensus         2 ~~g~L~V~vi~Ak~L~~~d~------------------------------------------~g~~dPYv~v~l~~~~-~   38 (336)
                      -+|+|.|+|++|++|+.+|+                                          .+++||||+|.|...+ .
T Consensus        12 lhg~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tSDPYV~I~Lg~~rv~   91 (868)
T PLN03008         12 LHGDLDLKIVKARRLPNMDMFSEHLRRLFTACNACARPTDTDDVDPRDKGEFGDKNIRSHRKVITSDPYVTVVVPQATLA   91 (868)
T ss_pred             eecccEEEEEEcccCCchhHHHHHHHhhcccccccccccccccccccccccccccccccccccCCCCceEEEEECCccee
Confidence            37899999999999875221                                          2367999999998765 6


Q ss_pred             EEEEeeCCCCCCeeeeEEEEEecchhhhcCCcEEEEEEeecCCCCCCcccEEEEEeceeeeccCCCCCCCCeeeeeeCCC
Q 019724           39 TTSVARDCGVRPTWNHQMRFNIDEAAAMQNNLTIVYSIRSTGGCFGNSDLGEVFVPVKEMLLRSNGDDDKPMSYNITTPG  118 (336)
Q Consensus        39 kTkv~~~~t~nP~WnE~f~F~v~~~~~~~~~~~L~v~V~d~d~~~~d~~LG~~~v~L~~l~~~~~~~~~~~~~~~l~~~~  118 (336)
                      ||+|+ +++.||+|||+|.|.+....     ..|+|+|||+ +.+++++||++.|+|++|.. ++.   ...|+.|.+.+
T Consensus        92 RTrVi-~n~~NPvWNE~F~f~vah~~-----s~L~f~VkD~-D~~gaD~IG~a~IPL~~L~~-Ge~---vd~Wl~Ll~~~  160 (868)
T PLN03008         92 RTRVL-KNSQEPLWDEKFNISIAHPF-----AYLEFQVKDD-DVFGAQIIGTAKIPVRDIAS-GER---ISGWFPVLGAS  160 (868)
T ss_pred             eEEeC-CCCCCCCcceeEEEEecCCC-----ceEEEEEEcC-CccCCceeEEEEEEHHHcCC-CCc---eEEEEEccccC
Confidence            99995 56799999999999997643     6899999998 55578999999999999886 322   34688887744


Q ss_pred             CC---cceEEEEEEEEcccCCCC
Q 019724          119 GR---AKGVLNVSYKFGPSSSAN  138 (336)
Q Consensus       119 g~---~~G~L~lsl~~~~~~~~~  138 (336)
                      ++   ..++|+|+|+|.+..+..
T Consensus       161 ~kp~k~~~kl~v~lqf~pv~~~~  183 (868)
T PLN03008        161 GKPPKAETAIFIDMKFTPFDQIH  183 (868)
T ss_pred             CCCCCCCcEEEEEEEEEEccccc
Confidence            33   357999999999877643

>cd04035 C2A_Rabphilin_Doc2 C2 domain first repeat present in Rabphilin and Double C2 domain

Probab=99.64  E-value=1.9e-15  Score=124.04  Aligned_cols=95  Identities=19%  Similarity=0.235  Sum_probs=78.4

Q ss_pred             ccEEEEEEEEecCCCCCCCCCCcceEEEEEEcC-----cceEEEEeeCCCCCCeeeeEEEEEecchhhhcCCcEEEEEEe
Q 019724            3 SRALDITVVSASDLKTAGMFSKMNVYAVVTIFG-----ESQTTSVARDCGVRPTWNHQMRFNIDEAAAMQNNLTIVYSIR   77 (336)
Q Consensus         3 ~g~L~V~vi~Ak~L~~~d~~g~~dPYv~v~l~~-----~~~kTkv~~~~t~nP~WnE~f~F~v~~~~~~~~~~~L~v~V~   77 (336)
                      .++|+|+|++|++|...+..+++||||+|.+..     ...||++++ ++.||+|||+|.|...... +..+..|.|+||
T Consensus        14 ~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~-~~~~P~Wne~f~f~~~~~~-~~~~~~l~~~v~   91 (123)
T cd04035          14 NSALHCTIIRAKGLKAMDANGLSDPYVKLNLLPGASKATKLRTKTVH-KTRNPEFNETLTYYGITEE-DIQRKTLRLLVL   91 (123)
T ss_pred             CCEEEEEEEEeeCCCCCCCCCCCCceEEEEEecCCCCCCceeeeeec-CCCCCCccceEEEcCCCHH-HhCCCEEEEEEE
Confidence            568999999999999888888999999999853     238999965 5799999999999633221 223468999999


Q ss_pred             ecCCCCCCcccEEEEEeceeeec
Q 019724           78 STGGCFGNSDLGEVFVPVKEMLL  100 (336)
Q Consensus        78 d~d~~~~d~~LG~~~v~L~~l~~  100 (336)
                      |++.. ++++||++.|+|++|..
T Consensus        92 d~~~~-~~~~iG~~~i~l~~l~~  113 (123)
T cd04035          92 DEDRF-GNDFLGETRIPLKKLKP  113 (123)
T ss_pred             EcCCc-CCeeEEEEEEEcccCCC
Confidence            99666 89999999999999986

Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain

>cd08409 C2B_Synaptotagmin-15 C2 domain second repeat present in Synaptotagmin 15

Probab=99.64  E-value=1.2e-15  Score=127.88  Aligned_cols=93  Identities=20%  Similarity=0.340  Sum_probs=78.2

Q ss_pred             ccEEEEEEEEecCCCCCCCCCCcceEEEEEEcCc-----ceEEEEeeCCCCCCeeeeEEEEEecchhhhcCCcEEEEEEe
Q 019724            3 SRALDITVVSASDLKTAGMFSKMNVYAVVTIFGE-----SQTTSVARDCGVRPTWNHQMRFNIDEAAAMQNNLTIVYSIR   77 (336)
Q Consensus         3 ~g~L~V~vi~Ak~L~~~d~~g~~dPYv~v~l~~~-----~~kTkv~~~~t~nP~WnE~f~F~v~~~~~~~~~~~L~v~V~   77 (336)
                      .++|+|+|++|+||...+ .+.+|+||+|++...     ++||++ ++++.||+|||+|.|.|....+  ....|.|+||
T Consensus        14 ~~~L~V~V~~a~nL~~~~-~~~~d~yVkv~l~~~~~~~~~~kT~v-~~~~~nP~fnE~F~f~i~~~~l--~~~~L~~~V~   89 (137)
T cd08409          14 LNRLTVVVLRARGLRQLD-HAHTSVYVKVSLMIHNKVVKTKKTEV-VDGAASPSFNESFSFKVTSRQL--DTASLSLSVM   89 (137)
T ss_pred             CCeEEEEEEEecCCCccc-CCCCCeEEEEEEEECCEEeeeeeccc-EeCCCCCcccceEEEECCHHHh--CccEEEEEEE
Confidence            468999999999999888 788999999998753     378888 4568999999999999976543  3478999999


Q ss_pred             ecCCCCCCcccEEEEEeceeee
Q 019724           78 STGGCFGNSDLGEVFVPVKEML   99 (336)
Q Consensus        78 d~d~~~~d~~LG~~~v~L~~l~   99 (336)
                      |++...++++||++.|....+.
T Consensus        90 ~~~~~~~~~~lG~v~ig~~~~~  111 (137)
T cd08409          90 QSGGVRKSKLLGRVVLGPFMYA  111 (137)
T ss_pred             eCCCCCCcceEEEEEECCcccC
Confidence            9977778999999999865443

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 id

>cd04047 C2B_Copine C2 domain second repeat in Copine

Probab=99.63  E-value=3.4e-15  Score=120.04  Aligned_cols=92  Identities=15%  Similarity=0.212  Sum_probs=75.0

Q ss_pred             EEEEEEecCCCCCCCCCCcceEEEEEEcCc------ceEEEEeeCCCCCCeeeeEEEEEecchhhhcCCcEEEEEEeecC
Q 019724            7 DITVVSASDLKTAGMFSKMNVYAVVTIFGE------SQTTSVARDCGVRPTWNHQMRFNIDEAAAMQNNLTIVYSIRSTG   80 (336)
Q Consensus         7 ~V~vi~Ak~L~~~d~~g~~dPYv~v~l~~~------~~kTkv~~~~t~nP~WnE~f~F~v~~~~~~~~~~~L~v~V~d~d   80 (336)
                      .+.+++|++|...+.++++||||+|++...      .+||++++ ++.||+|| +|.|.+......+....|.|+|||++
T Consensus         3 ~~~~i~a~~L~~~d~~~~~DPyv~v~~~~~~~~~~~~~kT~vi~-~t~nP~Wn-~f~~~~~~l~~~~~~~~l~~~V~d~d   80 (110)
T cd04047           3 VELQFSGKKLDKKDFFGKSDPFLEISRQSEDGTWVLVYRTEVIK-NTLNPVWK-PFTIPLQKLCNGDYDRPIKIEVYDYD   80 (110)
T ss_pred             EEEEEEeCCCCCCCCCCCCCeeEEEEEECCCCCEEEEEeeeEec-cCCCCceE-EEEEEHHHhcCCCcCCEEEEEEEEeC
Confidence            456779999999999999999999998754      28999965 57999999 68777654322222578999999997


Q ss_pred             CCCCCcccEEEEEeceeeec
Q 019724           81 GCFGNSDLGEVFVPVKEMLL  100 (336)
Q Consensus        81 ~~~~d~~LG~~~v~L~~l~~  100 (336)
                      ...+|++||+++++|++|+.
T Consensus        81 ~~~~d~~iG~~~~~l~~l~~  100 (110)
T cd04047          81 SSGKHDLIGEFETTLDELLK  100 (110)
T ss_pred             CCCCCcEEEEEEEEHHHHhc
Confidence            76689999999999999985

There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 dom

>cd00276 C2B_Synaptotagmin C2 domain second repeat present in Synaptotagmin

Probab=99.63  E-value=2.8e-15  Score=124.41  Aligned_cols=107  Identities=15%  Similarity=0.228  Sum_probs=86.3

Q ss_pred             CccEEEEEEEEecCCCCCCCCCCcceEEEEEEcCc-----ceEEEEeeCCCCCCeeeeEEEEEecchhhhcCCcEEEEEE
Q 019724            2 GSRALDITVVSASDLKTAGMFSKMNVYAVVTIFGE-----SQTTSVARDCGVRPTWNHQMRFNIDEAAAMQNNLTIVYSI   76 (336)
Q Consensus         2 ~~g~L~V~vi~Ak~L~~~d~~g~~dPYv~v~l~~~-----~~kTkv~~~~t~nP~WnE~f~F~v~~~~~~~~~~~L~v~V   76 (336)
                      ..++|+|+|++|++|...+..+.+||||+|++...     .++|++++ ++.||+|||+|.|.+....+  ....|.|+|
T Consensus        12 ~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~-~~~~P~wne~f~f~i~~~~l--~~~~l~~~v   88 (134)
T cd00276          12 TAERLTVVVLKARNLPPSDGKGLSDPYVKVSLLQGGKKLKKKKTSVKK-GTLNPVFNEAFSFDVPAEQL--EEVSLVITV   88 (134)
T ss_pred             CCCEEEEEEEEeeCCCCccCCCCCCcEEEEEEEcCCeEeeeecCccee-cCCCCeeeeeEEEECCHHHh--CCcEEEEEE
Confidence            45799999999999998888889999999999764     36888854 57999999999999876532  347899999


Q ss_pred             eecCCCCCCcccEEEEEeceeeeccCCCCCCCCeeeeeeCC
Q 019724           77 RSTGGCFGNSDLGEVFVPVKEMLLRSNGDDDKPMSYNITTP  117 (336)
Q Consensus        77 ~d~d~~~~d~~LG~~~v~L~~l~~~~~~~~~~~~~~~l~~~  117 (336)
                      ||++...++++||+++|+|++ ..  ..   ...|+.|.+.
T Consensus        89 ~d~~~~~~~~~lG~~~i~l~~-~~--~~---~~~W~~l~~~  123 (134)
T cd00276          89 VDKDSVGRNEVIGQVVLGPDS-GG--EE---LEHWNEMLAS  123 (134)
T ss_pred             EecCCCCCCceeEEEEECCCC-CC--cH---HHHHHHHHhC
Confidence            999666689999999999998 22  22   3356777653

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distin

>KOG1028 consensus Ca2+-dependent phospholipid-binding protein Synaptotagmin, required for synaptic vesicle and secretory granule exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.62  E-value=3.3e-15  Score=146.93  Aligned_cols=125  Identities=21%  Similarity=0.269  Sum_probs=100.7

Q ss_pred             ccEEEEEEEEecCCCCCCCCCCcceEEEEEEcCcc---eEEEEeeCCCCCCeeeeEEEEEecchhhhcCCcEEEEEEeec
Q 019724            3 SRALDITVVSASDLKTAGMFSKMNVYAVVTIFGES---QTTSVARDCGVRPTWNHQMRFNIDEAAAMQNNLTIVYSIRST   79 (336)
Q Consensus         3 ~g~L~V~vi~Ak~L~~~d~~g~~dPYv~v~l~~~~---~kTkv~~~~t~nP~WnE~f~F~v~~~~~~~~~~~L~v~V~d~   79 (336)
                      ...|+|+|++|++|...+..+.+||||+++|..++   ++|+|+ ++++||+|||+|.|.|....  ....+|.|.|||.
T Consensus       166 ~~~L~V~V~qa~~Lp~~d~~g~sdpyVK~~llPdk~~k~kT~v~-r~tlnP~fnEtf~f~v~~~~--l~~~~L~l~V~~~  242 (421)
T KOG1028|consen  166 LNLLTVRVIQAHDLPAKDRGGTSDPYVKVYLLPDKKGKFKTRVH-RKTLNPVFNETFRFEVPYEE--LSNRVLHLSVYDF  242 (421)
T ss_pred             CCEEEEEEEEecCCCcccCCCCCCCeeEEEEcCCCCCcceeeee-ecCcCCccccceEeecCHHH--hccCEEEEEEEec
Confidence            46899999999999999866789999999999765   899995 56899999999999976653  3568999999999


Q ss_pred             CCCCCCcccEEEEEeceeeeccCCCCCCCCeeeeeeCC---CCCcceEEEEEEEEccc
Q 019724           80 GGCFGNSDLGEVFVPVKEMLLRSNGDDDKPMSYNITTP---GGRAKGVLNVSYKFGPS  134 (336)
Q Consensus        80 d~~~~d~~LG~~~v~L~~l~~~~~~~~~~~~~~~l~~~---~g~~~G~L~lsl~~~~~  134 (336)
                      |+..+|++||++.|+|.++.....    ...|+.+...   .....|+|.|+|+|.+.
T Consensus       243 drfsr~~~iGev~~~l~~~~~~~~----~~~w~~l~~~~~~~~~~~gel~~sL~Y~p~  296 (421)
T KOG1028|consen  243 DRFSRHDFIGEVILPLGEVDLLST----TLFWKDLQPSSTDSEELAGELLLSLCYLPT  296 (421)
T ss_pred             CCcccccEEEEEEecCcccccccc----ceeeeccccccCCcccccceEEEEEEeecC
Confidence            888899999999999988776211    1245555542   22334899999999875

>cd08686 C2_ABR C2 domain in the Active BCR (Breakpoint cluster region) Related protein

Probab=99.62  E-value=6.3e-15  Score=119.49  Aligned_cols=80  Identities=20%  Similarity=0.317  Sum_probs=65.4

Q ss_pred             EEEEEEEecCCCCCCCCCCcceEEEEEEcCc-----ceEEEEeeCCCCCCeeeeEEEEEecchhhhcCCcEEEEEEeecC
Q 019724            6 LDITVVSASDLKTAGMFSKMNVYAVVTIFGE-----SQTTSVARDCGVRPTWNHQMRFNIDEAAAMQNNLTIVYSIRSTG   80 (336)
Q Consensus         6 L~V~vi~Ak~L~~~d~~g~~dPYv~v~l~~~-----~~kTkv~~~~t~nP~WnE~f~F~v~~~~~~~~~~~L~v~V~d~d   80 (336)
                      |+|+|++|++|+     +.+||||+|.+...     ..||++++ +++||+|||+|.|++..      ...|.|.|||++
T Consensus         1 L~V~V~~A~~L~-----~~sDPYV~l~v~~~~~~~~~~KTk~i~-~TlnPvWnE~F~i~l~~------s~~L~~~v~d~~   68 (118)
T cd08686           1 LNVIVHSAQGFK-----QSANLYCTLEVDSFGYFVKKAKTRVCR-DTTEPNWNEEFEIELEG------SQTLRILCYEKC   68 (118)
T ss_pred             CEEEEEeCCCCC-----CCCCCEEEEEEcCccccceeeeeeeec-CCCCCccceEEEEEeCC------CCEEEEEEEEcc
Confidence            689999999996     45899999998642     38999964 58999999999999963      269999999982


Q ss_pred             -------CCCCCcccEEEEEecee
Q 019724           81 -------GCFGNSDLGEVFVPVKE   97 (336)
Q Consensus        81 -------~~~~d~~LG~~~v~L~~   97 (336)
                             ....|++||++.|.|+-
T Consensus        69 ~~~~~~d~~~~d~~~G~g~i~Ld~   92 (118)
T cd08686          69 YSKVKLDGEGTDAIMGKGQIQLDP   92 (118)
T ss_pred             cccccccccCcccEEEEEEEEECH
Confidence                   33478999888877753

The ABR protein is similar to the breakpoint cluster region protein. It has homology to guanine nucleotide exchange proteins and GTPase-activating proteins (GAPs). ABR is expressed primarily in the brain, but also includes non-neuronal tissues such as the heart. It has been associated with human diseases such as Miller-Dieker syndrome in which mental retardation and malformations of the heart are present. ABR contains a RhoGEF domain and a PH-like domain upstream of its C2 domain and a RhoGAP domain downstream of this domain. A few members also contain a Bcr-Abl oncoprotein oligomerization domain at the very N-terminal end. Splice variants of ABR have been identified. ABR is found in a wide variety of organisms including chimpanzee, dog, mouse, rat, fruit fly, and mosquito. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arr

>PLN03200 cellulose synthase-interactive protein; Provisional

Probab=99.57  E-value=6.2e-15  Score=163.80  Aligned_cols=119  Identities=19%  Similarity=0.441  Sum_probs=96.6

Q ss_pred             ccEEEEEEEEecCCCCCCCCCCcceEEEEEEcCc-ceEEEEeeCCCCCCeeeeEEEEEecchhhhcCCcEEEEEEeecCC
Q 019724            3 SRALDITVVSASDLKTAGMFSKMNVYAVVTIFGE-SQTTSVARDCGVRPTWNHQMRFNIDEAAAMQNNLTIVYSIRSTGG   81 (336)
Q Consensus         3 ~g~L~V~vi~Ak~L~~~d~~g~~dPYv~v~l~~~-~~kTkv~~~~t~nP~WnE~f~F~v~~~~~~~~~~~L~v~V~d~d~   81 (336)
                      -|.|+|+|++|+||.  +.++++||||+|++++. +.|||+++ +++||+|||+|+|.+++..   .+..|+|+|||+| 
T Consensus      1979 ~G~L~V~V~~a~nl~--~~~~~sdPyv~l~~g~~~~~kTkvvk-~~~nP~Wne~f~~~~~~p~---~~~~l~iev~d~d- 2051 (2102)
T PLN03200       1979 PGSLTVTIKRGNNLK--QSMGNTNAFCKLTLGNGPPRQTKVVS-HSSSPEWKEGFTWAFDSPP---KGQKLHISCKSKN- 2051 (2102)
T ss_pred             CcceEEEEeeccccc--cccCCCCCeEEEEECCCCcccccccC-CCCCCCcccceeeeecCCC---CCCceEEEEEecC-
Confidence            378999999999998  45789999999999966 68899955 5799999999998887653   2467999999994 


Q ss_pred             CCCCcccEEEEEeceeeeccCCCCCCCCeeeeeeCCCCCcceE---EEEEEEEcc
Q 019724           82 CFGNSDLGEVFVPVKEMLLRSNGDDDKPMSYNITTPGGRAKGV---LNVSYKFGP  133 (336)
Q Consensus        82 ~~~d~~LG~~~v~L~~l~~~~~~~~~~~~~~~l~~~~g~~~G~---L~lsl~~~~  133 (336)
                      .++++.||.++|+|.+++.  ++.  ...||+|.. +++..|+   |.|+|+|..
T Consensus      2052 ~f~kd~~G~~~i~l~~vv~--~~~--~~~~~~L~~-~~~k~G~~~~~~~e~~w~~ 2101 (2102)
T PLN03200       2052 TFGKSSLGKVTIQIDRVVM--EGT--YSGEYSLNP-ESNKDGSSRTLEIEFQWSN 2101 (2102)
T ss_pred             ccCCCCCceEEEEHHHHhc--Cce--eeeeeecCc-ccccCCCcceEEEEEEecC
Confidence            5677799999999999997  332  235788874 3455777   999999864

>KOG1011 consensus Neurotransmitter release regulator, UNC-13 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.56  E-value=4.5e-15  Score=146.27  Aligned_cols=121  Identities=15%  Similarity=0.267  Sum_probs=99.8

Q ss_pred             cEEEEEEEEecCCCCCCCCCCcceEEEEEEcCcceEEEEeeCCCCCCeeeeEEEEEecchhhhcCCcEEEEEEeecCCCC
Q 019724            4 RALDITVVSASDLKTAGMFSKMNVYAVVTIFGESQTTSVARDCGVRPTWNHQMRFNIDEAAAMQNNLTIVYSIRSTGGCF   83 (336)
Q Consensus         4 g~L~V~vi~Ak~L~~~d~~g~~dPYv~v~l~~~~~kTkv~~~~t~nP~WnE~f~F~v~~~~~~~~~~~L~v~V~d~d~~~   83 (336)
                      .+|+++|++|.+|..+|..|++||||.+.++..++||+++. ..+||+|||.|.|+..+..     ..|+|.|||+|+..
T Consensus       295 akitltvlcaqgl~akdktg~sdpyvt~qv~ktkrrtrti~-~~lnpvw~ekfhfechnst-----drikvrvwded~dl  368 (1283)
T KOG1011|consen  295 AKITLTVLCAQGLIAKDKTGKSDPYVTAQVGKTKRRTRTIH-QELNPVWNEKFHFECHNST-----DRIKVRVWDEDNDL  368 (1283)
T ss_pred             eeeEEeeeecccceecccCCCCCCcEEEeecccchhhHhhh-hccchhhhhheeeeecCCC-----ceeEEEEecCcccH
Confidence            47899999999999999999999999999999999999965 5799999999999998875     78999999997653


Q ss_pred             -----------CCcccEEEEEeceeeeccCCCCCCCCeeeeeeC--CCCCcceEEEEEEEEcccCC
Q 019724           84 -----------GNSDLGEVFVPVKEMLLRSNGDDDKPMSYNITT--PGGRAKGVLNVSYKFGPSSS  136 (336)
Q Consensus        84 -----------~d~~LG~~~v~L~~l~~~~~~~~~~~~~~~l~~--~~g~~~G~L~lsl~~~~~~~  136 (336)
                                 +|||||+..|.+..|..      +..+||.|.+  .+..+.|.|+|.|.+.-+.+
T Consensus       369 ksklrqkl~resddflgqtvievrtlsg------emdvwynlekrtdksavsgairlhisveikge  428 (1283)
T KOG1011|consen  369 KSKLRQKLTRESDDFLGQTVIEVRTLSG------EMDVWYNLEKRTDKSAVSGAIRLHISVEIKGE  428 (1283)
T ss_pred             HHHHHHHhhhcccccccceeEEEEeccc------chhhhcchhhccchhhccceEEEEEEEEEcCc
Confidence                       48999999998888764      2346777765  33456788777777665443

>PF00168 C2: C2 domain; InterPro: IPR000008 The C2 domain is a Ca2+-dependent membrane-targeting module found in many cellular proteins involved in signal transduction or membrane trafficking

Probab=99.55  E-value=3.8e-14  Score=107.19  Aligned_cols=82  Identities=23%  Similarity=0.382  Sum_probs=70.0

Q ss_pred             EEEEEEEecCCCCCCCCCCcceEEEEEEcC---cceEEEEeeCCCCCCeeeeEEEEEecchhhhcCCcEEEEEEeecCCC
Q 019724            6 LDITVVSASDLKTAGMFSKMNVYAVVTIFG---ESQTTSVARDCGVRPTWNHQMRFNIDEAAAMQNNLTIVYSIRSTGGC   82 (336)
Q Consensus         6 L~V~vi~Ak~L~~~d~~g~~dPYv~v~l~~---~~~kTkv~~~~t~nP~WnE~f~F~v~~~~~~~~~~~L~v~V~d~d~~   82 (336)
                      |+|+|++|++|...+..++.|+||++++..   ..++|+++ +++.+|.|||+|.|.+.....    ..|.|+|||++..
T Consensus         1 L~v~I~~a~~L~~~~~~~~~~~yv~v~~~~~~~~~~~T~~~-~~~~~P~w~e~~~~~~~~~~~----~~l~~~V~~~~~~   75 (85)
T PF00168_consen    1 LTVTIHSARNLPSKDSNGKPDPYVRVSVNGSESTKYKTKVK-KNTSNPVWNEEFEFPLDDPDL----DSLSFEVWDKDSF   75 (85)
T ss_dssp             EEEEEEEEESSSSSSTTSSBEEEEEEEEETTTCEEEEECCB-SSBSSEEEEEEEEEEESHGCG----TEEEEEEEEETSS
T ss_pred             CEEEEEEEECCCCcccCCcccccceeecceeeeeeeeeeee-eccccceeeeeeeeeeecccc----cceEEEEEECCCC
Confidence            789999999999888788999999999998   44899985 557999999999999766542    4599999999555


Q ss_pred             CCCcccEEEE
Q 019724           83 FGNSDLGEVF   92 (336)
Q Consensus        83 ~~d~~LG~~~   92 (336)
                      ..|++||+++
T Consensus        76 ~~~~~iG~~~   85 (85)
T PF00168_consen   76 GKDELIGEVK   85 (85)
T ss_dssp             SSEEEEEEEE
T ss_pred             CCCCEEEEEC
Confidence            5699999975

C2 domains are unique among membrane targeting domains in that they show wide range of lipid selectivity for the major components of cell membranes, including phosphatidylserine and phosphatidylcholine. This C2 domain is about 116 amino-acid residues and is located between the two copies of the C1 domain in Protein Kinase C (that bind phorbol esters and diacylglycerol) (see PDOC00379 from PROSITEDOC) and the protein kinase catalytic domain (see PDOC00100 from PROSITEDOC). Regions with significant homology [] to the C2-domain have been found in many proteins. The C2 domain is thought to be involved in calcium-dependent phospholipid binding [] and in membrane targetting processes such as subcellular localisation. The 3D structure of the C2 domain of synaptotagmin has been reported [], the domain forms an eight-stranded beta sandwich constructed around a conserved 4-stranded motif, designated a C2 key []. Calcium binds in a cup-shaped depression formed by the N- and C-terminal loops of the C2-key motif. Structural analyses of several C2 domains have shown them to consist of similar ternary structures in which three Ca2+-binding loops are located at the end of an 8 stranded antiparallel beta sandwich. ; GO: 0005515 protein binding; PDB: 1RSY_A 1BYN_A 3NSJ_A 3QR1_D 3HN8_C 1DQV_A 3M7F_B 3KWU_A 3KWT_A 1V27_A ....

>KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms]

Probab=99.45  E-value=2.5e-13  Score=135.60  Aligned_cols=126  Identities=14%  Similarity=0.253  Sum_probs=106.7

Q ss_pred             cEEEEEEEEecCCCCCCCCCCcceEEEEEEcCcc-eEEEEeeCCCCCCeeeeEEEEEecchhhhcCCcEEEEEEeecCCC
Q 019724            4 RALDITVVSASDLKTAGMFSKMNVYAVVTIFGES-QTTSVARDCGVRPTWNHQMRFNIDEAAAMQNNLTIVYSIRSTGGC   82 (336)
Q Consensus         4 g~L~V~vi~Ak~L~~~d~~g~~dPYv~v~l~~~~-~kTkv~~~~t~nP~WnE~f~F~v~~~~~~~~~~~L~v~V~d~d~~   82 (336)
                      ..|.|+|.+||||+..+..+..||||.|.++.+. +||.++. +++.|.|.|.|.|+|....     ..|.|-|||+| .
T Consensus         5 ~sl~vki~E~knL~~~~~~g~~D~yC~v~lD~E~v~RT~tv~-ksL~PF~gEe~~~~iP~~F-----~~l~fYv~D~d-~   77 (800)
T KOG2059|consen    5 QSLKVKIGEAKNLPSYGPSGMRDCYCTVNLDQEEVCRTATVE-KSLCPFFGEEFYFEIPRTF-----RYLSFYVWDRD-L   77 (800)
T ss_pred             cceeEEEeecccCCCCCCCCCcCcceEEeecchhhhhhhhhh-hhcCCccccceEEecCcce-----eeEEEEEeccc-c
Confidence            4689999999999999999999999999999877 8999965 5899999999999998765     78999999996 7


Q ss_pred             CCCcccEEEEEeceeeeccCCCCCCCCeeeeeeCCCCCcceEEEEEEEEcccCCCC
Q 019724           83 FGNSDLGEVFVPVKEMLLRSNGDDDKPMSYNITTPGGRAKGVLNVSYKFGPSSSAN  138 (336)
Q Consensus        83 ~~d~~LG~~~v~L~~l~~~~~~~~~~~~~~~l~~~~g~~~G~L~lsl~~~~~~~~~  138 (336)
                      .+|+.||++.|.=.+|.. ..+.+ .|..++-.+.+.+++|+|+|+|++.+.....
T Consensus        78 ~~D~~IGKvai~re~l~~-~~~~d-~W~~L~~VD~dsEVQG~v~l~l~~~e~~~~~  131 (800)
T KOG2059|consen   78 KRDDIIGKVAIKREDLHM-YPGKD-TWFSLQPVDPDSEVQGKVHLELALTEAIQSS  131 (800)
T ss_pred             ccccccceeeeeHHHHhh-CCCCc-cceeccccCCChhhceeEEEEEEeccccCCC
Confidence            799999999998888876 33433 4555555557788999999999999877644

>PLN02223 phosphoinositide phospholipase C

Probab=99.41  E-value=2.2e-12  Score=128.06  Aligned_cols=117  Identities=19%  Similarity=0.349  Sum_probs=87.9

Q ss_pred             ccEEEEEEEEecCCC-----CCCCCCCcceEEEEEEcCcc-----eEEEEeeCCCCCCeeeeEEEEEecchhhhcCCcEE
Q 019724            3 SRALDITVVSASDLK-----TAGMFSKMNVYAVVTIFGES-----QTTSVARDCGVRPTWNHQMRFNIDEAAAMQNNLTI   72 (336)
Q Consensus         3 ~g~L~V~vi~Ak~L~-----~~d~~g~~dPYv~v~l~~~~-----~kTkv~~~~t~nP~WnE~f~F~v~~~~~~~~~~~L   72 (336)
                      ..+|+|+|+++.+|.     ..+.....|+||+|.|.+..     +||+| ++++.||+|||+|.|.|....+    ..|
T Consensus       408 ~~~L~V~Visgq~~~~~~~k~~~~~s~~DpyV~VeI~Gvp~D~~~~kT~v-~nNg~nPvWne~F~F~i~~PEL----AlL  482 (537)
T PLN02223        408 VKILKVKIYMGDGWIVDFKKRIGRLSKPDLYVRISIAGVPHDEKIMKTTV-KNNEWKPTWGEEFTFPLTYPDL----ALI  482 (537)
T ss_pred             ceEEEEEEEEcccccCCcccccCCCCCCCeEEEEEEeeccCCcceeEEEe-CCCCcCceecceeEEEEEccCc----eEE
Confidence            357999999999874     11234568999999998643     67765 7889999999999999977653    679


Q ss_pred             EEEEeecCCCCCCcccEEEEEeceeeeccCCCCCCCCeeeeeeCCCCCcce--EEEEEEEE
Q 019724           73 VYSIRSTGGCFGNSDLGEVFVPVKEMLLRSNGDDDKPMSYNITTPGGRAKG--VLNVSYKF  131 (336)
Q Consensus        73 ~v~V~d~d~~~~d~~LG~~~v~L~~l~~~~~~~~~~~~~~~l~~~~g~~~G--~L~lsl~~  131 (336)
                      .|+|+|+|....|+|||+++|+|..|.. +      ..++.|.++.++..-  +|.+.++|
T Consensus       483 rf~V~D~D~~~~ddfiGQ~~LPv~~Lr~-G------yR~VpL~~~~g~~l~~~~Ll~~f~~  536 (537)
T PLN02223        483 SFEVYDYEVSTADAFCGQTCLPVSELIE-G------IRAVPLYDERGKACSSTMLLTRFKW  536 (537)
T ss_pred             EEEEEecCCCCCCcEEEEEecchHHhcC-C------ceeEeccCCCcCCCCCceEEEEEEe
Confidence            9999999666689999999999999886 1      245677766665433  44444443

>cd08374 C2F_Ferlin C2 domain sixth repeat in Ferlin

Probab=99.40  E-value=2.6e-12  Score=106.78  Aligned_cols=95  Identities=15%  Similarity=0.161  Sum_probs=76.6

Q ss_pred             EEEEEEEEecCCCC--CCCCCC--cceEEEEEEcCc---ceEEEEeeCCCCC--CeeeeEEEEEecchhhh---------
Q 019724            5 ALDITVVSASDLKT--AGMFSK--MNVYAVVTIFGE---SQTTSVARDCGVR--PTWNHQMRFNIDEAAAM---------   66 (336)
Q Consensus         5 ~L~V~vi~Ak~L~~--~d~~g~--~dPYv~v~l~~~---~~kTkv~~~~t~n--P~WnE~f~F~v~~~~~~---------   66 (336)
                      .|+|.|.+|+++..  .+..++  +|+||+++|...   +++|.|+.+ ++|  ++||+.|.|.+.....+         
T Consensus         1 eLRViIw~~~~v~~~~~~~~g~~~sD~yVK~~L~~~~~~kqkTDVHyr-slnG~~~FNwRfvF~~~~~~~~~~~~~~~~~   79 (133)
T cd08374           1 ELRVIVWNTRDVLNDDTNITGEKMSDIYVKGWLDGLEEDKQKTDVHYR-SLDGEGNFNWRFVFPFDYLPAEKKIVVIKKE   79 (133)
T ss_pred             CEEEEEEECcCCcccccccCCccccCeEEEEEEccCcccccccceEEe-cCCCCcEEeEEEEEeeecCCccceeEEEeec
Confidence            48999999999553  344564  999999999874   399999765 688  99999999988762211         


Q ss_pred             ----------cCCcEEEEEEeecCCCCCCcccEEEEEeceeeec
Q 019724           67 ----------QNNLTIVYSIRSTGGCFGNSDLGEVFVPVKEMLL  100 (336)
Q Consensus        67 ----------~~~~~L~v~V~d~d~~~~d~~LG~~~v~L~~l~~  100 (336)
                                .....|.|+|||.|....|++||+++|+|..+..
T Consensus        80 ~~~~~~~~e~~~~~~L~lqvwD~D~~s~dd~iG~~~l~l~~l~~  123 (133)
T cd08374          80 HFWSLDETEYKIPPKLTLQVWDNDKFSPDDFLGSLELDLSILPR  123 (133)
T ss_pred             cccccCcceEecCcEEEEEEEECcccCCCCcceEEEEEhhhccc
Confidence                      2357899999999877789999999999998876

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>smart00239 C2 Protein kinase C conserved region 2 (CalB)

Probab=99.40  E-value=2.8e-12  Score=99.14  Aligned_cols=91  Identities=21%  Similarity=0.422  Sum_probs=77.0

Q ss_pred             EEEEEEEEecCCCCCCCCCCcceEEEEEEcCc---ceEEEEeeCCCCCCeeeeEEEEEecchhhhcCCcEEEEEEeecCC
Q 019724            5 ALDITVVSASDLKTAGMFSKMNVYAVVTIFGE---SQTTSVARDCGVRPTWNHQMRFNIDEAAAMQNNLTIVYSIRSTGG   81 (336)
Q Consensus         5 ~L~V~vi~Ak~L~~~d~~g~~dPYv~v~l~~~---~~kTkv~~~~t~nP~WnE~f~F~v~~~~~~~~~~~L~v~V~d~d~   81 (336)
                      +|.|+|+++++|.........++||++++...   ..+|+++. ++.||.|||+|.|.+....    ...|+|+|||++.
T Consensus         1 ~l~i~i~~~~~l~~~~~~~~~~~yv~v~~~~~~~~~~~T~~~~-~~~~P~w~e~~~~~~~~~~----~~~l~i~v~~~~~   75 (101)
T smart00239        1 TLTVKIISARNLPKKDKKGKSDPYVKVSLDGDPKEKKKTKVVK-NTLNPVWNETFEFEVPPPE----LAELEIEVYDKDR   75 (101)
T ss_pred             CeEEEEEEeeCCCCCCCCCCCCceEEEEEeCCccceEeeeEec-CCCCCcccceEEEEecCcc----cCEEEEEEEecCC
Confidence            47899999999988776567899999999876   58999855 4579999999999997653    4789999999955


Q ss_pred             CCCCcccEEEEEeceeeec
Q 019724           82 CFGNSDLGEVFVPVKEMLL  100 (336)
Q Consensus        82 ~~~d~~LG~~~v~L~~l~~  100 (336)
                      ...+.+||.+.++|.++..
T Consensus        76 ~~~~~~~G~~~~~l~~~~~   94 (101)
T smart00239       76 FGRDDFIGQVTIPLSDLLL   94 (101)
T ss_pred             ccCCceeEEEEEEHHHccc
Confidence            4468999999999998876

Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotamins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles.

>cd00030 C2 C2 domain

Probab=99.35  E-value=7.3e-12  Score=96.15  Aligned_cols=89  Identities=26%  Similarity=0.446  Sum_probs=75.8

Q ss_pred             EEEEEEEecCCCCCCCCCCcceEEEEEEcC-cceEEEEeeCCCCCCeeeeEEEEEecchhhhcCCcEEEEEEeecCCCCC
Q 019724            6 LDITVVSASDLKTAGMFSKMNVYAVVTIFG-ESQTTSVARDCGVRPTWNHQMRFNIDEAAAMQNNLTIVYSIRSTGGCFG   84 (336)
Q Consensus         6 L~V~vi~Ak~L~~~d~~g~~dPYv~v~l~~-~~~kTkv~~~~t~nP~WnE~f~F~v~~~~~~~~~~~L~v~V~d~d~~~~   84 (336)
                      |+|+|++|++|.........|+||++++.. ...+|+++. .+.||.|||+|.|.+...    ....|.|+||+++....
T Consensus         1 l~v~i~~~~~l~~~~~~~~~~~~v~v~~~~~~~~~T~~~~-~~~~P~w~~~~~~~~~~~----~~~~l~i~v~~~~~~~~   75 (102)
T cd00030           1 LRVTVIEARNLPAKDLNGKSDPYVKVSLGGKQKFKTKVVK-NTLNPVWNETFEFPVLDP----ESDTLTVEVWDKDRFSK   75 (102)
T ss_pred             CEEEEEeeeCCCCcCCCCCCCcEEEEEeccCceEecceeC-CCCCCcccceEEEEccCC----CCCEEEEEEEecCCCCC
Confidence            579999999998766667899999999998 668998854 468999999999999762    24789999999965556


Q ss_pred             CcccEEEEEeceeee
Q 019724           85 NSDLGEVFVPVKEML   99 (336)
Q Consensus        85 d~~LG~~~v~L~~l~   99 (336)
                      +++||++.+.+.++.
T Consensus        76 ~~~ig~~~~~l~~l~   90 (102)
T cd00030          76 DDFLGEVEIPLSELL   90 (102)
T ss_pred             CceeEEEEEeHHHhh
Confidence            899999999999988

The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions.

>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]

Probab=99.34  E-value=5.3e-12  Score=132.34  Aligned_cols=128  Identities=16%  Similarity=0.235  Sum_probs=103.2

Q ss_pred             CccEEEEEEEEecCCCCCC--CCCCcceEEEEEEcCcc-eEEEEeeCCCCCCeeeeEEEEEecchhhhcCCcEEEEEEee
Q 019724            2 GSRALDITVVSASDLKTAG--MFSKMNVYAVVTIFGES-QTTSVARDCGVRPTWNHQMRFNIDEAAAMQNNLTIVYSIRS   78 (336)
Q Consensus         2 ~~g~L~V~vi~Ak~L~~~d--~~g~~dPYv~v~l~~~~-~kTkv~~~~t~nP~WnE~f~F~v~~~~~~~~~~~L~v~V~d   78 (336)
                      +.|+|.|+|.+|++|+..+  +.+..|+|+++.+.... -||++ ++++.||+|||+|.+.|....     ..|.|+|||
T Consensus       434 aIGVv~vkI~sa~~lk~~d~~i~~~vDpyit~~~~~r~~gkT~v-~~nt~nPvwNEt~Yi~lns~~-----d~L~LslyD  507 (1227)
T COG5038         434 AIGVVEVKIKSAEGLKKSDSTINGTVDPYITVTFSDRVIGKTRV-KKNTLNPVWNETFYILLNSFT-----DPLNLSLYD  507 (1227)
T ss_pred             eeEEEEEEEeeccCcccccccccCCCCceEEEEeccccCCccce-eeccCCccccceEEEEecccC-----CceeEEEEe
Confidence            4689999999999999888  56889999999976543 79999 567899999999999987653     789999999


Q ss_pred             cCCCCCCcccEEEEEeceeeeccCCCCCCCCeeeeeeCCCCCcceEEEEEEEEcccCCCCC
Q 019724           79 TGGCFGNSDLGEVFVPVKEMLLRSNGDDDKPMSYNITTPGGRAKGVLNVSYKFGPSSSANN  139 (336)
Q Consensus        79 ~d~~~~d~~LG~~~v~L~~l~~~~~~~~~~~~~~~l~~~~g~~~G~L~lsl~~~~~~~~~~  139 (336)
                      +++..+|+++|++.++|..|..+...   ....++++ .+.+..|+|+..++|.+....+.
T Consensus       508 ~n~~~sd~vvG~~~l~L~~L~~~~~~---~ne~~e~~-~~~k~vGrL~yDl~ffp~~e~k~  564 (1227)
T COG5038         508 FNSFKSDKVVGSTQLDLALLHQNPVK---KNELYEFL-RNTKNVGRLTYDLRFFPVIEDKK  564 (1227)
T ss_pred             ccccCCcceeeeEEechHHhhhcccc---ccceeeee-ccCccceEEEEeeeeecccCCcc
Confidence            86777999999999999998873221   12234544 35677899999999998765543

>PLN02952 phosphoinositide phospholipase C

Probab=99.34  E-value=9.7e-12  Score=125.79  Aligned_cols=118  Identities=17%  Similarity=0.255  Sum_probs=90.5

Q ss_pred             ccEEEEEEEEecCCCC------CCCCCCcceEEEEEEcCc-----ceEEEEeeCCCCCCeeeeEEEEEecchhhhcCCcE
Q 019724            3 SRALDITVVSASDLKT------AGMFSKMNVYAVVTIFGE-----SQTTSVARDCGVRPTWNHQMRFNIDEAAAMQNNLT   71 (336)
Q Consensus         3 ~g~L~V~vi~Ak~L~~------~d~~g~~dPYv~v~l~~~-----~~kTkv~~~~t~nP~WnE~f~F~v~~~~~~~~~~~   71 (336)
                      ..+|+|+|+++.+|..      .+.....|+||+|.+.+.     ++||+++.+ +.||+|||+|.|.+....    -..
T Consensus       469 ~~~L~V~VisGq~l~lp~~~~~~~~~~~~D~yV~V~i~G~p~D~~~~kTkvi~n-N~nPvWnE~F~F~i~~PE----LAl  543 (599)
T PLN02952        469 KKTLKVKVYLGDGWRLDFSHTHFDSYSPPDFYTKMYIVGVPADNAKKKTKIIED-NWYPAWNEEFSFPLTVPE----LAL  543 (599)
T ss_pred             cceEEEEEEECcccCCCCccccCCccCCCCceEEEEEeccCCCCcceeeeeccC-CCCcccCCeeEEEEEcCC----ccE
Confidence            3579999999988742      122234589999998763     289999665 599999999999987654    367


Q ss_pred             EEEEEeecCCCCCCcccEEEEEeceeeeccCCCCCCCCeeeeeeCCCCCcceEEEEEEEEc
Q 019724           72 IVYSIRSTGGCFGNSDLGEVFVPVKEMLLRSNGDDDKPMSYNITTPGGRAKGVLNVSYKFG  132 (336)
Q Consensus        72 L~v~V~d~d~~~~d~~LG~~~v~L~~l~~~~~~~~~~~~~~~l~~~~g~~~G~L~lsl~~~  132 (336)
                      |+|+|||+|....|+|||+++|+|..|.. +      ..++.|++..++..+.++|-|+|.
T Consensus       544 lrf~V~D~D~~~~ddfiGq~~lPv~~Lr~-G------yR~VpL~~~~G~~l~~a~Llv~f~  597 (599)
T PLN02952        544 LRIEVREYDMSEKDDFGGQTCLPVSELRP-G------IRSVPLHDKKGEKLKNVRLLMRFI  597 (599)
T ss_pred             EEEEEEecCCCCCCCeEEEEEcchhHhcC-C------ceeEeCcCCCCCCCCCEEEEEEEE
Confidence            99999999776789999999999999986 2      246788877777766666666653

>PLN02270 phospholipase D alpha

Probab=99.32  E-value=1.5e-11  Score=126.91  Aligned_cols=124  Identities=15%  Similarity=0.281  Sum_probs=100.2

Q ss_pred             ccEEEEEEEEecCCCCCC------------------CCCCcceEEEEEEcCcc-eEEEEeeCCCCCCeeeeEEEEEecch
Q 019724            3 SRALDITVVSASDLKTAG------------------MFSKMNVYAVVTIFGES-QTTSVARDCGVRPTWNHQMRFNIDEA   63 (336)
Q Consensus         3 ~g~L~V~vi~Ak~L~~~d------------------~~g~~dPYv~v~l~~~~-~kTkv~~~~t~nP~WnE~f~F~v~~~   63 (336)
                      +|+|+|+|++|++|++.+                  ..+++|+||.|.|...+ .||+++.+...||+|||+|.+.+...
T Consensus         7 hg~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~a~v~rtr~~~~~~~~p~w~e~f~i~~ah~   86 (808)
T PLN02270          7 HGTLHATIYEVDKLHSGGGPGFLGKLVANVEETVGVGKGESQLYATIDLEKARVGRTRKIENEPKNPRWYESFHIYCAHM   86 (808)
T ss_pred             ecceEEEEEEcccCCCcchhhHHHHHHhccchhccCCCCCCCceEEEEeCCcEEEEEeecCCCCCCCccccceEEeeccC
Confidence            789999999999997521                  01357999999999877 79999766557999999999999776


Q ss_pred             hhhcCCcEEEEEEeecCCCCCCcccEEEEEeceeeeccCCCCCCCCeeeeeeCCCCCcc---eEEEEEEEEcccCC
Q 019724           64 AAMQNNLTIVYSIRSTGGCFGNSDLGEVFVPVKEMLLRSNGDDDKPMSYNITTPGGRAK---GVLNVSYKFGPSSS  136 (336)
Q Consensus        64 ~~~~~~~~L~v~V~d~d~~~~d~~LG~~~v~L~~l~~~~~~~~~~~~~~~l~~~~g~~~---G~L~lsl~~~~~~~  136 (336)
                      .     ..|+|.|+|. +.++..+||.+.|++.+|+. ++.   ...|+.+...++++.   -+|+|+|+|.+...
T Consensus        87 ~-----~~v~f~vkd~-~~~g~~~ig~~~~p~~~~~~-g~~---i~~~~~~~~~~~~p~~~~~~~~~~~~f~~~~~  152 (808)
T PLN02270         87 A-----SNIIFTVKDD-NPIGATLIGRAYIPVEEILD-GEE---VDRWVEILDNDKNPIHGGSKIHVKLQYFEVTK  152 (808)
T ss_pred             c-----ceEEEEEecC-CccCceEEEEEEEEHHHhcC-CCc---cccEEeccCCCCCcCCCCCEEEEEEEEEEccc
Confidence            4     7899999998 77788899999999999987 332   335788887665542   48999999998654

>KOG1028 consensus Ca2+-dependent phospholipid-binding protein Synaptotagmin, required for synaptic vesicle and secretory granule exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.30  E-value=1e-11  Score=122.24  Aligned_cols=92  Identities=17%  Similarity=0.304  Sum_probs=79.0

Q ss_pred             ccEEEEEEEEecCCCCCCCCCCcceEEEEEEcCcc-----eEEEEeeCCCCCCeeeeEEEEEecchhhhcCCcEEEEEEe
Q 019724            3 SRALDITVVSASDLKTAGMFSKMNVYAVVTIFGES-----QTTSVARDCGVRPTWNHQMRFNIDEAAAMQNNLTIVYSIR   77 (336)
Q Consensus         3 ~g~L~V~vi~Ak~L~~~d~~g~~dPYv~v~l~~~~-----~kTkv~~~~t~nP~WnE~f~F~v~~~~~~~~~~~L~v~V~   77 (336)
                      .++|+|.|++||+|+..+..+..|+||++++....     +||.+ +++++||+|||+|+|.|....+  .+..|.|+||
T Consensus       297 ~g~ltv~v~kar~L~~~~~~~~~d~~Vk~~l~~~~~~~~kkkT~~-~~~~~npv~nesf~F~vp~~~l--~~~~l~l~V~  373 (421)
T KOG1028|consen  297 AGRLTVVVIKARNLKSMDVGGLSDPYVKVTLLDGDKRLSKKKTSV-KKKTLNPVFNETFVFDVPPEQL--AEVSLELTVW  373 (421)
T ss_pred             CCeEEEEEEEecCCCcccCCCCCCccEEEEEecCCceeeeeeeec-ccCCCCCcccccEEEeCCHHHh--heeEEEEEEE
Confidence            58999999999999999999999999999987543     77777 6779999999999999987654  3478999999


Q ss_pred             ecCCCCCCcccEEEEEecee
Q 019724           78 STGGCFGNSDLGEVFVPVKE   97 (336)
Q Consensus        78 d~d~~~~d~~LG~~~v~L~~   97 (336)
                      |+|+...+++||.|.+-...
T Consensus       374 d~d~~~~~~~iG~~~lG~~~  393 (421)
T KOG1028|consen  374 DHDTLGSNDLIGRCILGSDS  393 (421)
T ss_pred             EcccccccceeeEEEecCCC
Confidence            99888788899998887654

>KOG1328 consensus Synaptic vesicle protein BAIAP3, involved in vesicle priming/regulation [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]

Probab=99.29  E-value=5.3e-13  Score=133.32  Aligned_cols=124  Identities=16%  Similarity=0.316  Sum_probs=97.7

Q ss_pred             EEEEEEecCCCCCCCCCCcceEEEEEEcCcc-------------------------------eEEEEeeCCCCCCeeeeE
Q 019724            7 DITVVSASDLKTAGMFSKMNVYAVVTIFGES-------------------------------QTTSVARDCGVRPTWNHQ   55 (336)
Q Consensus         7 ~V~vi~Ak~L~~~d~~g~~dPYv~v~l~~~~-------------------------------~kTkv~~~~t~nP~WnE~   55 (336)
                      .|.+..|++|..++.+|.+||||++.+....                               +-|+| ++.|+||+|+|+
T Consensus       117 ~is~~~ak~l~akd~ngfSdP~~m~g~~p~~~~~~~pra~~eqrdgl~~~~~~~GpiPAKlIkatsv-k~~TLnPkW~Ek  195 (1103)
T KOG1328|consen  117 NISLLEAKDLIAKDVNGFSDPFAMMGVVPGTRKENSPRALHEQRDGLMHRFQDTGPIPAKLIKATSV-KKKTLNPKWSEK  195 (1103)
T ss_pred             HHHHHHhcCccccCCCCCCChhhhhccccccccccChhhhhhhhhhhhhccccCCCCcHHHhhhccc-ccccCCcchhhh
Confidence            4556789999999999999999998765321                               34555 777999999999


Q ss_pred             EEEEecchhhhcCCcEEEEEEeecCCC------------------------------------CCCcccEEEEEeceeee
Q 019724           56 MRFNIDEAAAMQNNLTIVYSIRSTGGC------------------------------------FGNSDLGEVFVPVKEML   99 (336)
Q Consensus        56 f~F~v~~~~~~~~~~~L~v~V~d~d~~------------------------------------~~d~~LG~~~v~L~~l~   99 (336)
                      |.|+|++..    ...+.+.|||+|+.                                    ..|||||++.|+|.+|-
T Consensus       196 F~F~IeDv~----tDqfHlDIWDHDDe~sv~dAvs~LNeV~G~kG~GRyFKqv~qSARans~d~tDDFLGciNipl~EiP  271 (1103)
T KOG1328|consen  196 FQFTIEDVQ----TDQFHLDIWDHDDEESVLDAVSSLNEVTGFKGIGRYFKQVTQSARANSDDCTDDFLGCINIPLAEIP  271 (1103)
T ss_pred             eeeehhccc----cceeeeecccCCccHHHHHHHHHHhhhhcchhHHHHHHHHHHHHhcCCCccccccccccccchhcCC
Confidence            999997653    57899999999742                                    13899999999999997


Q ss_pred             ccCCCCCCCCeeeeeeCCCCCcceEEEEEEEEcccCCCC
Q 019724          100 LRSNGDDDKPMSYNITTPGGRAKGVLNVSYKFGPSSSAN  138 (336)
Q Consensus       100 ~~~~~~~~~~~~~~l~~~~g~~~G~L~lsl~~~~~~~~~  138 (336)
                      .  .+-+ .|..++.++...+++|.++|+|++..+....
T Consensus       272 ~--~Gld-~WFkLepRS~~S~VqG~~~LklwLsT~e~~~  307 (1103)
T KOG1328|consen  272 P--DGLD-QWFKLEPRSDKSKVQGQVKLKLWLSTKEEGR  307 (1103)
T ss_pred             c--chHH-HHhccCcccccccccceEEEEEEEeeecccc
Confidence            6  4433 5666666767788999999999998765433

>cd08689 C2_fungal_Pkc1p C2 domain found in protein kinase C (Pkc1p) in Saccharomyces cerevisiae

Probab=99.29  E-value=6.2e-12  Score=99.10  Aligned_cols=84  Identities=15%  Similarity=0.260  Sum_probs=70.8

Q ss_pred             EEEEEEEecCCCCCC---CCCCcceEEEEEEcCc-ceEEEEeeCCCCCCeeeeEEEEEecchhhhcCCcEEEEEEeecCC
Q 019724            6 LDITVVSASDLKTAG---MFSKMNVYAVVTIFGE-SQTTSVARDCGVRPTWNHQMRFNIDEAAAMQNNLTIVYSIRSTGG   81 (336)
Q Consensus         6 L~V~vi~Ak~L~~~d---~~g~~dPYv~v~l~~~-~~kTkv~~~~t~nP~WnE~f~F~v~~~~~~~~~~~L~v~V~d~d~   81 (336)
                      |+|+|.+||+|....   +.+++|+||+|.+.+. +.||++    ++|+.|||+|.|+|..      ..+|+|.|||+ .
T Consensus         1 L~I~V~~~RdvdH~~~~~~~~~~etyV~IKved~~kaRTr~----srnd~WnE~F~i~Vdk------~nEiel~VyDk-~   69 (109)
T cd08689           1 LTITITSARDVDHIASPRFSKRPETYVSIKVEDVERARTKP----SRNDRWNEDFEIPVEK------NNEEEVIVYDK-G   69 (109)
T ss_pred             CEEEEEEEecCccccchhhccCCCcEEEEEECCEEEEeccC----CCCCcccceEEEEecC------CcEEEEEEEeC-C
Confidence            689999999999877   6688999999999987 588887    4799999999999954      37899999998 3


Q ss_pred             CCCCcccEEEEEeceeeec
Q 019724           82 CFGNSDLGEVFVPVKEMLL  100 (336)
Q Consensus        82 ~~~d~~LG~~~v~L~~l~~  100 (336)
                      ....-.||...|.|++|.+
T Consensus        70 ~~~~~Pi~llW~~~sdi~E   88 (109)
T cd08689          70 GDQPVPVGLLWLRLSDIAE   88 (109)
T ss_pred             CCeecceeeehhhHHHHHH
Confidence            3344469999999999876

This family is named after the protein kinase C in Saccharomyces cerevisiae, Pkc1p. Protein kinase C is a member of a family of Ser/Thr phosphotransferases that are involved in many cellular signaling pathways. PKC has two antiparallel coiled-coiled regions (ACC finger domain) (AKA PKC homology region 1 (HR1)/ Rho binding domain) upstream of the C2 domain and two C1 domains downstream. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains, like those of PKC, are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that

>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]

Probab=99.25  E-value=3.8e-11  Score=121.73  Aligned_cols=117  Identities=21%  Similarity=0.296  Sum_probs=91.2

Q ss_pred             EEEEEEEEecCCC-CCC---CCCCcceEEEEEEcCcc-----eEEEEeeCCCCCCeeeeEEEEEecchhhhcCCcEEEEE
Q 019724            5 ALDITVVSASDLK-TAG---MFSKMNVYAVVTIFGES-----QTTSVARDCGVRPTWNHQMRFNIDEAAAMQNNLTIVYS   75 (336)
Q Consensus         5 ~L~V~vi~Ak~L~-~~d---~~g~~dPYv~v~l~~~~-----~kTkv~~~~t~nP~WnE~f~F~v~~~~~~~~~~~L~v~   75 (336)
                      +|.|+|+++.++. +.+   +....||||.|.+.+..     .+|+++++++.||.|+|+|.|.|...++    ..|+|+
T Consensus       617 tL~IkI~sGq~~~~~~~~~~~~~~~dP~v~VeI~Gvp~D~~~~~Tk~v~~NgfnP~W~e~f~F~l~vPEL----AliRF~  692 (746)
T KOG0169|consen  617 TLKIKIISGQGWLPDFGKTKFGEISDPDVYVEIAGVPADCAEQKTKVVKNNGFNPIWDEEFEFQLSVPEL----ALIRFE  692 (746)
T ss_pred             eeEEEEEecCcccCCCCCCcccccCCCCEEEEEcccccchhhhhceeeccCCcCcccCCeEEEEEeccce----eEEEEE
Confidence            7999999999554 322   22457999999987643     9999889999999999999999987754    789999


Q ss_pred             EeecCCCCCCcccEEEEEeceeeeccCCCCCCCCeeeeeeCCCCCc--ceEEEEEEEEc
Q 019724           76 IRSTGGCFGNSDLGEVFVPVKEMLLRSNGDDDKPMSYNITTPGGRA--KGVLNVSYKFG  132 (336)
Q Consensus        76 V~d~d~~~~d~~LG~~~v~L~~l~~~~~~~~~~~~~~~l~~~~g~~--~G~L~lsl~~~  132 (336)
                      |+|+|-..+|||+|+.+||+.+|..   +    ...+.|.++.++.  .-+|.|.|++.
T Consensus       693 V~d~d~~~~ddF~GQ~tlP~~~L~~---G----yRhVpL~~~~G~~~~~asLfv~i~~~  744 (746)
T KOG0169|consen  693 VHDYDYIGKDDFIGQTTLPVSELRQ---G----YRHVPLLSREGEALSSASLFVRIAIV  744 (746)
T ss_pred             EEecCCCCcccccceeeccHHHhhC---c----eeeeeecCCCCccccceeEEEEEEEe
Confidence            9999666679999999999999886   1    2345666655554  35666666664

>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]

Probab=99.24  E-value=1.6e-11  Score=128.73  Aligned_cols=127  Identities=15%  Similarity=0.210  Sum_probs=100.0

Q ss_pred             ccEEEEEEEEecCCCCCCCCCCcceEEEEEEcCcc-eEEEEeeCCCCCCeeeeEEEEEecchhhhcCCcEEEEEEeecCC
Q 019724            3 SRALDITVVSASDLKTAGMFSKMNVYAVVTIFGES-QTTSVARDCGVRPTWNHQMRFNIDEAAAMQNNLTIVYSIRSTGG   81 (336)
Q Consensus         3 ~g~L~V~vi~Ak~L~~~d~~g~~dPYv~v~l~~~~-~kTkv~~~~t~nP~WnE~f~F~v~~~~~~~~~~~L~v~V~d~d~   81 (336)
                      .|.|+|.++++.||+..|.++.+||||++.+..++ +||++++ +++||+|||+|.++|.+..    ...|+|.|+|+|.
T Consensus      1039 sG~l~I~~~~~~nl~~~d~ng~sDpfv~~~ln~k~vyktkv~K-ktlNPvwNEe~~i~v~~r~----~D~~~i~v~Dwd~ 1113 (1227)
T COG5038        1039 SGYLTIMLRSGENLPSSDENGYSDPFVKLFLNEKSVYKTKVVK-KTLNPVWNEEFTIEVLNRV----KDVLTINVNDWDS 1113 (1227)
T ss_pred             cCcEEEEEeccCCCcccccCCCCCceEEEEecceecccccchh-ccCCCCccccceEeeeccc----cceEEEEEeeccc
Confidence            57899999999999999999999999999999885 9999965 5799999999999997654    4789999999977


Q ss_pred             CCCCcccEEEEEeceeeeccCCCCCCCCeeeeeeCCC-CCcceEEEEEEEEcccCCCC
Q 019724           82 CFGNSDLGEVFVPVKEMLLRSNGDDDKPMSYNITTPG-GRAKGVLNVSYKFGPSSSAN  138 (336)
Q Consensus        82 ~~~d~~LG~~~v~L~~l~~~~~~~~~~~~~~~l~~~~-g~~~G~L~lsl~~~~~~~~~  138 (336)
                      ..++|+||.+.|+|..|..  +....  ....|..+. ....|.+++...|+.+...+
T Consensus      1114 ~~knd~lg~~~idL~~l~~--~~~~n--~~i~ldgk~~~~~~g~~~~~~~~r~~~~~n 1167 (1227)
T COG5038        1114 GEKNDLLGTAEIDLSKLEP--GGTTN--SNIPLDGKTFIVLDGTLHPGFNFRSKYALN 1167 (1227)
T ss_pred             CCCccccccccccHhhcCc--CCccc--eeeeccCcceEecccEeecceecchhhhhc
Confidence            7799999999999999876  22211  122322211 24567777777777665544

>PLN02230 phosphoinositide phospholipase C 4

Probab=99.23  E-value=5.1e-11  Score=120.44  Aligned_cols=117  Identities=15%  Similarity=0.229  Sum_probs=87.8

Q ss_pred             ccEEEEEEEEecCCC----CC--CCCCCcceEEEEEEcCcc-----eEEEEeeCCCCCCeeeeEEEEEecchhhhcCCcE
Q 019724            3 SRALDITVVSASDLK----TA--GMFSKMNVYAVVTIFGES-----QTTSVARDCGVRPTWNHQMRFNIDEAAAMQNNLT   71 (336)
Q Consensus         3 ~g~L~V~vi~Ak~L~----~~--d~~g~~dPYv~v~l~~~~-----~kTkv~~~~t~nP~WnE~f~F~v~~~~~~~~~~~   71 (336)
                      ..+|.|+|+++.++.    ..  +.....|+||+|.|.+..     .||+| .+++.||+|||+|.|.+....+    ..
T Consensus       468 ~~~L~V~VisGq~~~l~~~k~~~~~~s~~DpyV~Vei~Gvp~D~~~~kT~v-~~n~~nP~Wneef~F~l~vPEL----Al  542 (598)
T PLN02230        468 KKTLKVKVCMGDGWLLDFKKTHFDSYSPPDFFVRVGIAGAPVDEVMEKTKI-EYDTWTPIWNKEFIFPLAVPEL----AL  542 (598)
T ss_pred             CcEEEEEEEEccCccCCCccccCCCCCCCCceEEEEEEECCCCCcccceec-cCCCCCCccCCeeEEEEEcCce----eE
Confidence            358999999999863    11  223457999999987632     78887 5678999999999999876543    78


Q ss_pred             EEEEEeecCCCCCCcccEEEEEeceeeeccCCCCCCCCeeeeeeCCCCCc--ceEEEEEEEE
Q 019724           72 IVYSIRSTGGCFGNSDLGEVFVPVKEMLLRSNGDDDKPMSYNITTPGGRA--KGVLNVSYKF  131 (336)
Q Consensus        72 L~v~V~d~d~~~~d~~LG~~~v~L~~l~~~~~~~~~~~~~~~l~~~~g~~--~G~L~lsl~~  131 (336)
                      |+|+|+|+|....|+|||+.+|+|..|.. +      ...+.|.++++..  .-+|.+.++|
T Consensus       543 lRf~V~d~d~~~~ddfiGQ~~lPv~~Lr~-G------yR~V~L~~~~G~~l~~~~Ll~~f~~  597 (598)
T PLN02230        543 LRVEVHEHDINEKDDFGGQTCLPVSEIRQ-G------IHAVPLFNRKGVKYSSTRLLMRFEF  597 (598)
T ss_pred             EEEEEEECCCCCCCCEEEEEEcchHHhhC-c------cceEeccCCCcCCCCCCeeEEEEEe
Confidence            99999999666789999999999999886 1      2346777655543  2356665554

>PLN02222 phosphoinositide phospholipase C 2

Probab=99.20  E-value=1.6e-10  Score=116.65  Aligned_cols=117  Identities=17%  Similarity=0.237  Sum_probs=86.7

Q ss_pred             ccEEEEEEEEecCCC----C--CCCCCCcceEEEEEEcCc-----ceEEEEeeCCCCCCeeeeEEEEEecchhhhcCCcE
Q 019724            3 SRALDITVVSASDLK----T--AGMFSKMNVYAVVTIFGE-----SQTTSVARDCGVRPTWNHQMRFNIDEAAAMQNNLT   71 (336)
Q Consensus         3 ~g~L~V~vi~Ak~L~----~--~d~~g~~dPYv~v~l~~~-----~~kTkv~~~~t~nP~WnE~f~F~v~~~~~~~~~~~   71 (336)
                      ..+|+|+|+++.++.    .  .+.....|+||+|.|.+.     ++||+++.+ +.||+|||+|.|.|....+    ..
T Consensus       451 ~~~L~V~Visgq~~~l~~~~~~~~~~~~~dpyV~Vei~G~p~D~~~~rTk~v~n-n~nP~W~e~f~F~i~~PeL----Al  525 (581)
T PLN02222        451 KTTLRVTIYMGEGWYFDFRHTHFDQYSPPDFYTRVGIAGVPGDTVMKKTKTLED-NWIPAWDEVFEFPLTVPEL----AL  525 (581)
T ss_pred             cceEEEEEEEcccccCCCCccccCCCCCCCeeEEEEEeccCCCcceeeeEecCC-CCCcccCCeeEEEEEcCce----eE
Confidence            357999999998742    2  122345799999999743     289999765 4899999999999876543    78


Q ss_pred             EEEEEeecCCCCCCcccEEEEEeceeeeccCCCCCCCCeeeeeeCCCCCc--ceEEEEEEEE
Q 019724           72 IVYSIRSTGGCFGNSDLGEVFVPVKEMLLRSNGDDDKPMSYNITTPGGRA--KGVLNVSYKF  131 (336)
Q Consensus        72 L~v~V~d~d~~~~d~~LG~~~v~L~~l~~~~~~~~~~~~~~~l~~~~g~~--~G~L~lsl~~  131 (336)
                      |+|+|||+|....|+|||+.+|+|..|.. +      ...+.|++..+..  .-+|.+.++|
T Consensus       526 lRf~V~d~D~~~~ddfigq~~lPv~~Lr~-G------yR~V~L~~~~g~~l~~a~Lfv~~~~  580 (581)
T PLN02222        526 LRLEVHEYDMSEKDDFGGQTCLPVWELSQ-G------IRAFPLHSRKGEKYKSVKLLVKVEF  580 (581)
T ss_pred             EEEEEEECCCCCCCcEEEEEEcchhhhhC-c------cceEEccCCCcCCCCCeeEEEEEEe
Confidence            99999999666689999999999999886 1      2356777655443  3456666554

>PLN02228 Phosphoinositide phospholipase C

Probab=99.19  E-value=2.2e-10  Score=115.35  Aligned_cols=120  Identities=17%  Similarity=0.280  Sum_probs=90.8

Q ss_pred             cEEEEEEEEecCCC----CC--CCCCCcceEEEEEEcCcc-----eEEEEeeCCCCCCee-eeEEEEEecchhhhcCCcE
Q 019724            4 RALDITVVSASDLK----TA--GMFSKMNVYAVVTIFGES-----QTTSVARDCGVRPTW-NHQMRFNIDEAAAMQNNLT   71 (336)
Q Consensus         4 g~L~V~vi~Ak~L~----~~--d~~g~~dPYv~v~l~~~~-----~kTkv~~~~t~nP~W-nE~f~F~v~~~~~~~~~~~   71 (336)
                      .+|+|+|+++.+|.    ..  +.....|+||+|.+.+..     +||+++. ++.||+| ||+|.|.+....+    ..
T Consensus       431 ~~L~I~ViSGq~l~lp~~~~~~~~~~~~DpyV~Vei~G~p~D~~~~rTk~~~-n~~nP~W~~e~f~F~~~~pEL----A~  505 (567)
T PLN02228        431 TTLKVKIYTGEGWDLDFHLTHFDQYSPPDFFVKIGIAGVPRDTVSYRTETAV-DQWFPIWGNDEFLFQLRVPEL----AL  505 (567)
T ss_pred             ceEEEEEEECCccCCCCCCCCCCCCCCCCcEEEEEEEecCCCCCcceeeccC-CCCCceECCCeEEEEEEcCce----eE
Confidence            47999999999872    11  223457999999987532     7999865 4689999 9999999876543    78


Q ss_pred             EEEEEeecCCCCCCcccEEEEEeceeeeccCCCCCCCCeeeeeeCCCCCc--ceEEEEEEEEcccC
Q 019724           72 IVYSIRSTGGCFGNSDLGEVFVPVKEMLLRSNGDDDKPMSYNITTPGGRA--KGVLNVSYKFGPSS  135 (336)
Q Consensus        72 L~v~V~d~d~~~~d~~LG~~~v~L~~l~~~~~~~~~~~~~~~l~~~~g~~--~G~L~lsl~~~~~~  135 (336)
                      |+|+|+|+|....|+|||+++|+|+.|..       -...+.|.+..++.  ..+|.+.+++....
T Consensus       506 lRf~V~D~d~~~~d~figq~~lPv~~Lr~-------GYR~VpL~~~~G~~l~~atLfv~~~~~~~~  564 (567)
T PLN02228        506 LWFKVQDYDNDTQNDFAGQTCLPLPELKS-------GVRAVRLHDRAGKAYKNTRLLVSFALDPPY  564 (567)
T ss_pred             EEEEEEeCCCCCCCCEEEEEEcchhHhhC-------CeeEEEccCCCCCCCCCeEEEEEEEEcCcc
Confidence            99999999666689999999999999876       23456777655554  45688888876543

>KOG1264 consensus Phospholipase C [Lipid transport and metabolism]

Probab=99.04  E-value=1e-09  Score=111.28  Aligned_cols=120  Identities=23%  Similarity=0.285  Sum_probs=90.3

Q ss_pred             cEEEEEEEEecCCCCCCCCCCcceEEEEEEcCcc-----eEEEEeeCCCCCCeee-eEEEEEecchhhhcCCcEEEEEEe
Q 019724            4 RALDITVVSASDLKTAGMFSKMNVYAVVTIFGES-----QTTSVARDCGVRPTWN-HQMRFNIDEAAAMQNNLTIVYSIR   77 (336)
Q Consensus         4 g~L~V~vi~Ak~L~~~d~~g~~dPYv~v~l~~~~-----~kTkv~~~~t~nP~Wn-E~f~F~v~~~~~~~~~~~L~v~V~   77 (336)
                      -+|.|.|+.||.|.+.. -+...|||+|.|.+..     ++|+++.++++||+|| |+|+|+|.+...    ..|+|.|+
T Consensus      1065 ~~lsv~vigaRHL~k~g-r~i~cPfVevEiiGa~~Dt~~~~t~~V~dNGlnPiWn~e~ftFeI~nPe~----A~lRF~V~ 1139 (1267)
T KOG1264|consen 1065 MTLSVKVLGARHLPKLG-RSIACPFVEVEIIGAEYDTNKFKTTVVNDNGLNPIWNPEKFTFEIYNPEF----AFLRFVVY 1139 (1267)
T ss_pred             eEEEEEEeeccccccCC-CCccCCcEEEEEeccccCCCceEEEEeccCCCCCCCCCcceEEEeeCCce----EEEEEEEe
Confidence            36889999999998654 3456799999987643     7888878999999999 999999988753    78999999


Q ss_pred             ecCCCC-CCcccEEEEEeceeeeccCCCCCCCCeeeeeeCCC--CCcceEEEEEEEEcccCC
Q 019724           78 STGGCF-GNSDLGEVFVPVKEMLLRSNGDDDKPMSYNITTPG--GRAKGVLNVSYKFGPSSS  136 (336)
Q Consensus        78 d~d~~~-~d~~LG~~~v~L~~l~~~~~~~~~~~~~~~l~~~~--g~~~G~L~lsl~~~~~~~  136 (336)
                      |+ +++ ...||++++.|+..|..       ...+..|++.-  .-...+|.|.|+..++..
T Consensus      1140 ee-Dmfs~~~FiaqA~yPv~~ik~-------GfRsVpLkN~ySEdlELaSLLv~i~m~~~~~ 1193 (1267)
T KOG1264|consen 1140 EE-DMFSDPNFLAQATYPVKAIKS-------GFRSVPLKNGYSEDLELASLLVFIEMRPVLE 1193 (1267)
T ss_pred             cc-cccCCcceeeeeecchhhhhc-------cceeeecccCchhhhhhhhheeeeEeccccC
Confidence            99 555 45699999999988775       22345555421  223456777777766544

>KOG1328 consensus Synaptic vesicle protein BAIAP3, involved in vesicle priming/regulation [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]

Probab=98.91  E-value=3.4e-10  Score=113.61  Aligned_cols=97  Identities=14%  Similarity=0.254  Sum_probs=84.4

Q ss_pred             ccEEEEEEEEecCCCCCCCCCCcceEEEEEEcCcc-------eEEEEeeCCCCCCeeeeEEEEEecchhhhcCCcEEEEE
Q 019724            3 SRALDITVVSASDLKTAGMFSKMNVYAVVTIFGES-------QTTSVARDCGVRPTWNHQMRFNIDEAAAMQNNLTIVYS   75 (336)
Q Consensus         3 ~g~L~V~vi~Ak~L~~~d~~g~~dPYv~v~l~~~~-------~kTkv~~~~t~nP~WnE~f~F~v~~~~~~~~~~~L~v~   75 (336)
                      ..+|.|.|+-|+++...|.+|.+||||+|.|....       +||+|+ ++|+||+|+|+|.|.|..+.+..+...|.|+
T Consensus       946 ~q~L~veVlhA~diipLD~NGlSDPFVviEl~P~~~fp~v~~q~T~V~-~rtLnPVfDE~FeFsVp~e~c~te~Am~~FT 1024 (1103)
T KOG1328|consen  946 AQTLVVEVLHAKDIIPLDSNGLSDPFVVIELIPKFRFPAVPVQKTKVV-SRTLNPVFDETFEFSVPPEPCSTETAMLHFT 1024 (1103)
T ss_pred             ccchhhhhhccccccccCCCCCCCCeEEEEeccccccccchhhhhhhh-hccccchhhhheeeecCccccccccceEEEE
Confidence            45788889999999999999999999999999764       999995 5689999999999999887666667889999


Q ss_pred             EeecCCCCCCcccEEEEEeceeeec
Q 019724           76 IRSTGGCFGNSDLGEVFVPVKEMLL  100 (336)
Q Consensus        76 V~d~d~~~~d~~LG~~~v~L~~l~~  100 (336)
                      |+|+|=...+||-|++.+-|.++-.
T Consensus      1025 VMDHD~L~sNDFaGEA~L~Lg~vpG 1049 (1103)
T KOG1328|consen 1025 VMDHDYLRSNDFAGEAFLELGDVPG 1049 (1103)
T ss_pred             eeccceecccccchHHHHhhCCCCC
Confidence            9999666689999999999888753

>KOG1031 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]

Probab=98.90  E-value=2.6e-09  Score=105.08  Aligned_cols=129  Identities=16%  Similarity=0.237  Sum_probs=99.5

Q ss_pred             ccEEEEEEEEecCCCCCCCC-CCcceEEEEEEcCcceEEEEeeCCCCCCeeeeE-EEEEecchhhhcCCcEEEEEEeecC
Q 019724            3 SRALDITVVSASDLKTAGMF-SKMNVYAVVTIFGESQTTSVARDCGVRPTWNHQ-MRFNIDEAAAMQNNLTIVYSIRSTG   80 (336)
Q Consensus         3 ~g~L~V~vi~Ak~L~~~d~~-g~~dPYv~v~l~~~~~kTkv~~~~t~nP~WnE~-f~F~v~~~~~~~~~~~L~v~V~d~d   80 (336)
                      -|+|-|+|+.||+|+.+|.. ...|.||+|.+.+..+||.|.. +++||.||.. |+|+|++.++  .+..|.|+|.|+|
T Consensus         2 pgkl~vki~a~r~lpvmdkasd~tdafveik~~n~t~ktdvf~-kslnp~wnsdwfkfevddadl--qdeplqi~lld~d   78 (1169)
T KOG1031|consen    2 PGKLGVKIKAARHLPVMDKASDLTDAFVEIKFANTTFKTDVFL-KSLNPQWNSDWFKFEVDDADL--QDEPLQIRLLDHD   78 (1169)
T ss_pred             CCcceeEEEeccCCcccccccccchheeEEEecccceehhhhh-hhcCCcccccceEEecChhhh--ccCCeeEEEeccc
Confidence            37899999999999988764 3568999999999999999965 4899999955 8999988754  3467999999997


Q ss_pred             CCCCCcccEEEEEeceeeeccCCC-----CC-CCCeeeeeeCCCCCcceEEEEEEEEccc
Q 019724           81 GCFGNSDLGEVFVPVKEMLLRSNG-----DD-DKPMSYNITTPGGRAKGVLNVSYKFGPS  134 (336)
Q Consensus        81 ~~~~d~~LG~~~v~L~~l~~~~~~-----~~-~~~~~~~l~~~~g~~~G~L~lsl~~~~~  134 (336)
                      ....+|-||++.|.++-|+.....     .. ...-|+.+.+.-...+|+|.+.+++.-.
T Consensus        79 tysandaigkv~i~idpl~~e~aaqavhgkgtvisgw~pifdtihgirgeinvivkvdlf  138 (1169)
T KOG1031|consen   79 TYSANDAIGKVNIDIDPLCLEEAAQAVHGKGTVISGWFPIFDTIHGIRGEINVIVKVDLF  138 (1169)
T ss_pred             ccccccccceeeeccChHHHHhHHhhhcCCceEEeeeeecceecccccceeEEEEEEeeh
Confidence            777899999999999987652211     11 1334677765334568999888886543

>PLN02352 phospholipase D epsilon

Probab=98.78  E-value=3.6e-08  Score=101.86  Aligned_cols=120  Identities=15%  Similarity=0.229  Sum_probs=88.4

Q ss_pred             CccEEEEEEEEecCCCCC----CCC-CCcceEEEEEEcCcc-eEEEEeeCCCCCCeeeeEEEEEecchhhhcCCcEEEEE
Q 019724            2 GSRALDITVVSASDLKTA----GMF-SKMNVYAVVTIFGES-QTTSVARDCGVRPTWNHQMRFNIDEAAAMQNNLTIVYS   75 (336)
Q Consensus         2 ~~g~L~V~vi~Ak~L~~~----d~~-g~~dPYv~v~l~~~~-~kTkv~~~~t~nP~WnE~f~F~v~~~~~~~~~~~L~v~   75 (336)
                      -+|+|.++|.+|+-+...    +.. ...|+||.|.|...+ .||    ++..||+|||+|.+.+....    ...|+|.
T Consensus         8 lhg~l~~~i~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~~~v~rt----~~~~~p~w~e~f~i~~ah~~----~~~~~f~   79 (758)
T PLN02352          8 FHGTLEATIFDATPYTPPFPFNCIFLNGKATYVTIKIGNKKVAKT----SHEYDRVWNQTFQILCAHPL----DSTITIT   79 (758)
T ss_pred             cccceEEEEEEeeehhhcccccccccCCCCceEEEEeCCcEEecC----CCCCCCccccceeEEeeeec----CCcEEEE
Confidence            478999999999854332    111 123999999998866 566    23469999999999987653    2469999


Q ss_pred             EeecCCCCCCcccEEEEEeceeeeccCCCCCCCCeeeeeeCCCCCc-c-eEEEEEEEEcccCCC
Q 019724           76 IRSTGGCFGNSDLGEVFVPVKEMLLRSNGDDDKPMSYNITTPGGRA-K-GVLNVSYKFGPSSSA  137 (336)
Q Consensus        76 V~d~d~~~~d~~LG~~~v~L~~l~~~~~~~~~~~~~~~l~~~~g~~-~-G~L~lsl~~~~~~~~  137 (336)
                      |+|.     ..+||.+.|++.+|+. ++.  ....|+.+...++++ . .+|+|+|+|.+....
T Consensus        80 vk~~-----~~~ig~~~~p~~~~~~-g~~--~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~  135 (758)
T PLN02352         80 LKTK-----CSILGRFHIQAHQIVT-EAS--FINGFFPLIMENGKPNPELKLRFMLWFRPAELE  135 (758)
T ss_pred             EecC-----CeEEEEEEEEHHHhhC-CCc--ccceEEEcccCCCCCCCCCEEEEEEEEEEhhhC
Confidence            9883     6799999999999987 322  134678888765554 3 489999999987654

>KOG1013 consensus Synaptic vesicle protein rabphilin-3A [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.70  E-value=2.6e-09  Score=99.09  Aligned_cols=130  Identities=15%  Similarity=0.174  Sum_probs=94.2

Q ss_pred             CccEEEEEEEEecCCCCCCCCCCcceEEEEEEcCcc-----eEEEEeeCCCCCCeeeeEEEEEecchhhhcCCcEEEEEE
Q 019724            2 GSRALDITVVSASDLKTAGMFSKMNVYAVVTIFGES-----QTTSVARDCGVRPTWNHQMRFNIDEAAAMQNNLTIVYSI   76 (336)
Q Consensus         2 ~~g~L~V~vi~Ak~L~~~d~~g~~dPYv~v~l~~~~-----~kTkv~~~~t~nP~WnE~f~F~v~~~~~~~~~~~L~v~V   76 (336)
                      +++++.++|..|++|+.+++.+..|+|+++.+....     .||++ ..+++|++|||+........+ ......+.+.|
T Consensus        91 ~~~~~~~tl~~a~~lk~~~~~~~~d~~~~~~llpga~kl~slr~~t-~~n~lN~~w~etev~~~i~~~-~~~~K~~Rk~v  168 (362)
T KOG1013|consen   91 ESRMLDTTLDRAKGLKPMDINGLADPYVKLHLLPGAGKLNSLRTKT-TRNTLNPEWNETEVYEGITDD-DTHLKVLRKVV  168 (362)
T ss_pred             hhhhcceeechhcccchhhhhhhcchHHhhhcccchhhhhhhhHHh-hccCcCcceeccceecccccc-hhhhhhhheee
Confidence            356889999999999999999999999999988643     77777 456899999999876643221 12345678888


Q ss_pred             eecCCCCCCcccEEEEEeceeeeccCCCCCCCCeeeeeeC-----CCCCcceEEEEEEEEcc
Q 019724           77 RSTGGCFGNSDLGEVFVPVKEMLLRSNGDDDKPMSYNITT-----PGGRAKGVLNVSYKFGP  133 (336)
Q Consensus        77 ~d~d~~~~d~~LG~~~v~L~~l~~~~~~~~~~~~~~~l~~-----~~g~~~G~L~lsl~~~~  133 (336)
                      +|++.+.+++++|+.+|.|..|..+.......|+.+.+-.     .+.+.+|+|.++|.|..
T Consensus       169 cdn~~~~~~~sqGq~r~~lkKl~p~q~k~f~~cl~~~lp~~rad~~~~E~rg~i~isl~~~s  230 (362)
T KOG1013|consen  169 CDNDKKTHNESQGQSRVSLKKLKPLQRKSFNICLEKSLPSERADRDEDEERGAILISLAYSS  230 (362)
T ss_pred             ccCcccccccCcccchhhhhccChhhcchhhhhhhccCCcccccccchhhccceeeeeccCc
Confidence            8987777899999999999888653222112333333321     12356899999988764

>KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms]

Probab=98.68  E-value=3e-08  Score=99.81  Aligned_cols=122  Identities=17%  Similarity=0.213  Sum_probs=83.3

Q ss_pred             EEecCCCCCCCCCCcceEEEEEEcCcc----eEEEEeeCCCCCCeeeeEEEEEecchh-----------hhcCCcEEEEE
Q 019724           11 VSASDLKTAGMFSKMNVYAVVTIFGES----QTTSVARDCGVRPTWNHQMRFNIDEAA-----------AMQNNLTIVYS   75 (336)
Q Consensus        11 i~Ak~L~~~d~~g~~dPYv~v~l~~~~----~kTkv~~~~t~nP~WnE~f~F~v~~~~-----------~~~~~~~L~v~   75 (336)
                      ++++++-... ++.+||||++++.+..    .+|++.+ .|.+|.|||.|.|++....           .+++...|+|+
T Consensus       138 L~~r~~~P~~-~~~~dp~~~v~~~g~~~~~~~~T~~~k-kt~~p~~~Ev~~f~~~~~~~~s~ks~~~~~~e~~~l~irv~  215 (800)
T KOG2059|consen  138 LKTRQGLPII-NGQCDPFARVTLCGPSKLKEKKTKVKK-KTTNPQFDEVFYFEVTREESYSKKSLFMPEEEDDMLEIRVD  215 (800)
T ss_pred             hhhcccCcee-CCCCCcceEEeecccchhhccccceee-eccCcchhhheeeeeccccccccchhcCcccCCceeeEEEe
Confidence            4444443332 4569999999987654    5999854 5899999999999987651           11235679999


Q ss_pred             EeecCCCC-CCcccEEEEEeceeeeccCCCCCCCCeeeeeeC-----CCCCcceEEEEEEEEcccCC
Q 019724           76 IRSTGGCF-GNSDLGEVFVPVKEMLLRSNGDDDKPMSYNITT-----PGGRAKGVLNVSYKFGPSSS  136 (336)
Q Consensus        76 V~d~d~~~-~d~~LG~~~v~L~~l~~~~~~~~~~~~~~~l~~-----~~g~~~G~L~lsl~~~~~~~  136 (336)
                      +|++.+.. .++|+|++.|++..+... .. .+.|..++.+.     .++...|.++|+++|.....
T Consensus       216 lW~~~~~~~~~~FlGevrv~v~~~~~~-s~-p~~W~~Lqp~~~g~~~~~~~~lGslrl~v~y~~D~V  280 (800)
T KOG2059|consen  216 LWNDLNLVINDVFLGEVRVPVDVLRQK-SS-PAAWYYLQPRPNGEKSSDGGDLGSLRLNVTYTEDHV  280 (800)
T ss_pred             eccchhhhhhhhhceeEEeehhhhhhc-cC-ccceEEEecCCCcccCCCCCCccceeeeEEeeecee
Confidence            99943433 699999999999988741 22 22344333332     12445789999999987543

>KOG0905 consensus Phosphoinositide 3-kinase [Signal transduction mechanisms]

Probab=98.33  E-value=4.8e-07  Score=95.42  Aligned_cols=106  Identities=23%  Similarity=0.297  Sum_probs=82.4

Q ss_pred             ccEEEEEEEEecCCCCCCCCCCcceEEEEEEcCcc-----eEEEEeeCCCCCCeeeeEEEEE-ecchhhhcCCcEEEEEE
Q 019724            3 SRALDITVVSASDLKTAGMFSKMNVYAVVTIFGES-----QTTSVARDCGVRPTWNHQMRFN-IDEAAAMQNNLTIVYSI   76 (336)
Q Consensus         3 ~g~L~V~vi~Ak~L~~~d~~g~~dPYv~v~l~~~~-----~kTkv~~~~t~nP~WnE~f~F~-v~~~~~~~~~~~L~v~V   76 (336)
                      +++|+|.|.-+|+|.-..-....||||++.|....     +||+|+++ ++||+|||.+.++ +..+.  ...++|.+.|
T Consensus      1523 ~~~LtImV~H~K~L~~Lqdg~~P~pyVK~YLlPdp~k~sKRKTKvvrk-t~~PTfnE~LvY~g~p~~~--l~qReLQ~sV 1599 (1639)
T KOG0905|consen 1523 NGTLTIMVMHAKGLALLQDGQDPDPYVKTYLLPDPRKTSKRKTKVVRK-TRNPTFNEMLVYDGFPKEI--LQQRELQVSV 1599 (1639)
T ss_pred             CceEEEEhhhhcccccccCCCCCCcceeEEecCCchHhhhhhhccccc-cCCCchhhheeecCCchhh--hhhheeeeee
Confidence            67999999999999544434568999999998643     89999665 7999999999887 44332  2347899999


Q ss_pred             eecCCCCCCcccEEEEEeceeeeccCCCCCCCCeeeeee
Q 019724           77 RSTGGCFGNSDLGEVFVPVKEMLLRSNGDDDKPMSYNIT  115 (336)
Q Consensus        77 ~d~d~~~~d~~LG~~~v~L~~l~~~~~~~~~~~~~~~l~  115 (336)
                      |..+....+.|||.+.|+|.++....+    ...||.|.
T Consensus      1600 ls~~~~~en~~lg~v~i~L~~~~l~kE----~~~Wy~lg 1634 (1639)
T KOG0905|consen 1600 LSNGGLLENVFLGGVNIPLLKVDLLKE----SVGWYNLG 1634 (1639)
T ss_pred             ecccceeeeeeeeeeecchhhcchhhh----hcceeecc
Confidence            999666688999999999998765222    34677775

>KOG3837 consensus Uncharacterized conserved protein, contains DM14 and C2 domains [General function prediction only]

Probab=98.27  E-value=6.2e-07  Score=85.65  Aligned_cols=129  Identities=12%  Similarity=0.169  Sum_probs=91.1

Q ss_pred             ccEEEEEEEEecCCCCCCCCCCcceEEEEEEc--C---cceEEEEeeCCCCCCeeeeEEEEEecchhh-------hcCCc
Q 019724            3 SRALDITVVSASDLKTAGMFSKMNVYAVVTIF--G---ESQTTSVARDCGVRPTWNHQMRFNIDEAAA-------MQNNL   70 (336)
Q Consensus         3 ~g~L~V~vi~Ak~L~~~d~~g~~dPYv~v~l~--~---~~~kTkv~~~~t~nP~WnE~f~F~v~~~~~-------~~~~~   70 (336)
                      ...|++.|+++.++..-.-.-..|-||++.+-  +   .+.+|.|++ .+.+|.|+|.|.+.+.....       .-.+.
T Consensus       366 d~elel~ivrg~~~pvp~gp~hld~fvr~efpl~nD~~qk~kt~vik-~t~SPdfde~fklni~rg~~~nr~fqR~fkr~  444 (523)
T KOG3837|consen  366 DQELELAIVRGQKNPVPGGPMHLDQFVRLEFPLENDSRQKLKTDVIK-VTPSPDFDEDFKLNIRRGPGLNREFQRRFKRL  444 (523)
T ss_pred             hhHhHHHHhhcccCCCCCCchhHHhhhcccccccccccccCccceee-CCCCCCcccceeeeccCCCcccHHHHHHHHhc
Confidence            44677788888777643322235678887643  2   237888865 58999999999999876210       11356


Q ss_pred             EEEEEEeecCCCC-CCcccEEEEEeceeeeccCCCCCCCCeeeeeeCCCCCcceEEEEEEEEcccCC
Q 019724           71 TIVYSIRSTGGCF-GNSDLGEVFVPVKEMLLRSNGDDDKPMSYNITTPGGRAKGVLNVSYKFGPSSS  136 (336)
Q Consensus        71 ~L~v~V~d~d~~~-~d~~LG~~~v~L~~l~~~~~~~~~~~~~~~l~~~~g~~~G~L~lsl~~~~~~~  136 (336)
                      .++|+||++...+ +|+|+|++.|.|..|.+  ...  .+..+.|++.+..+.|.|.++++++..+.
T Consensus       445 g~kfeifhkggf~rSdkl~gt~nikle~Len--~ce--i~e~~~l~DGRK~vGGkLevKvRiR~Pi~  507 (523)
T KOG3837|consen  445 GKKFEIFHKGGFNRSDKLTGTGNIKLEILEN--MCE--ICEYLPLKDGRKAVGGKLEVKVRIRQPIG  507 (523)
T ss_pred             CeeEEEeeccccccccceeceeeeeehhhhc--ccc--hhhceeccccccccCCeeEEEEEEecccc
Confidence            7999999995554 79999999999987765  332  34567888766667899999999987543

>KOG1011 consensus Neurotransmitter release regulator, UNC-13 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=98.19  E-value=2.7e-06  Score=85.20  Aligned_cols=105  Identities=14%  Similarity=0.241  Sum_probs=80.8

Q ss_pred             cEEEEEEEEecCCCCCCCCCCcceEEEEEEcCcc-------eEEEEeeCCCCCCeeeeEEEEEecchhhhcCCcEEEEEE
Q 019724            4 RALDITVVSASDLKTAGMFSKMNVYAVVTIFGES-------QTTSVARDCGVRPTWNHQMRFNIDEAAAMQNNLTIVYSI   76 (336)
Q Consensus         4 g~L~V~vi~Ak~L~~~d~~g~~dPYv~v~l~~~~-------~kTkv~~~~t~nP~WnE~f~F~v~~~~~~~~~~~L~v~V   76 (336)
                      .+++|+|+.|.+|+ ....+...|||+|.+.+..       +.|++ +.++..|.+||+|.|-+.++. +.+..+|.|.|
T Consensus      1125 hkvtvkvvaandlk-wqtsgmFrPFVEV~ivGP~lsDKKRK~~TKt-KsnnWaPKyNEtF~f~Lg~e~-~Pe~YEL~~~V 1201 (1283)
T KOG1011|consen 1125 HKVTVKVVAANDLK-WQTSGMFRPFVEVHIVGPHLSDKKRKFSTKT-KSNNWAPKYNETFHFFLGNEG-GPEHYELQFCV 1201 (1283)
T ss_pred             ceEEEEEEeccccc-chhccccccceEEEEecCcccchhhhccccc-cCCCcCcccCceeEEEeccCC-CCceEEEEEee
Confidence            36889999999997 3456778999999986522       67777 667899999999999997753 45567899999


Q ss_pred             eecCCCC-CCcccEEEEEeceeeeccCCCCCCCCeeeeeeC
Q 019724           77 RSTGGCF-GNSDLGEVFVPVKEMLLRSNGDDDKPMSYNITT  116 (336)
Q Consensus        77 ~d~d~~~-~d~~LG~~~v~L~~l~~~~~~~~~~~~~~~l~~  116 (336)
                      .|+ -.. .|+.||.+.+.|.++..+  ++-  -+|+.|.+
T Consensus      1202 KDY-CFAReDRvvGl~VlqL~~va~k--GS~--a~W~pLgr 1237 (1283)
T KOG1011|consen 1202 KDY-CFAREDRVVGLAVLQLRSVADK--GSC--ACWVPLGR 1237 (1283)
T ss_pred             hhh-eeecccceeeeeeeehhhHhhc--Cce--eEeeeccc
Confidence            887 333 577899999999999874  332  36777754

>KOG1013 consensus Synaptic vesicle protein rabphilin-3A [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.09  E-value=4e-06  Score=78.19  Aligned_cols=88  Identities=13%  Similarity=0.207  Sum_probs=72.7

Q ss_pred             cEEEEEEEEecCCCCCCCCCCcceEEEEEEcCcc-----eEEEEeeCCCCCCeeeeEEEEEecchhhhcCCcEEEEEEee
Q 019724            4 RALDITVVSASDLKTAGMFSKMNVYAVVTIFGES-----QTTSVARDCGVRPTWNHQMRFNIDEAAAMQNNLTIVYSIRS   78 (336)
Q Consensus         4 g~L~V~vi~Ak~L~~~d~~g~~dPYv~v~l~~~~-----~kTkv~~~~t~nP~WnE~f~F~v~~~~~~~~~~~L~v~V~d   78 (336)
                      .-|.|+++.|..|...|.++-+|+||.+++....     .||++ ++++++|+||+.|.|++...++  ....+.|.|||
T Consensus       233 ~~l~vt~iRc~~l~ssDsng~sDpyvS~~l~pdv~~~fkkKt~~-~K~t~~p~fd~~~~~~i~pgdL--a~~kv~lsvgd  309 (362)
T KOG1013|consen  233 PGLIVTIIRCSHLASSDSNGYSDPYVSQRLSPDVGKKFKKKTQQ-KKKTLNPEFDEEFFYDIGPGDL--AYKKVALSVGD  309 (362)
T ss_pred             CceEEEEEEeeeeeccccCCCCCccceeecCCCcchhhcccCcc-hhccCCccccccccccCCccch--hcceEEEeecc
Confidence            3588999999999999999999999999988543     78888 5678999999999999987754  45779999999


Q ss_pred             cCCCCCCcccEEEEEe
Q 019724           79 TGGCFGNSDLGEVFVP   94 (336)
Q Consensus        79 ~d~~~~d~~LG~~~v~   94 (336)
                      .+.-.+.+++|-+.+-
T Consensus       310 ~~~G~s~d~~GG~~~g  325 (362)
T KOG1013|consen  310 YDIGKSNDSIGGSMLG  325 (362)
T ss_pred             cCCCcCccCCCccccc
Confidence            9555578888865543

>cd08683 C2_C2cd3 C2 domain found in C2 calcium-dependent domain containing 3 (C2cd3) proteins

Probab=98.06  E-value=9.9e-06  Score=66.25  Aligned_cols=98  Identities=23%  Similarity=0.404  Sum_probs=67.9

Q ss_pred             EEEEEEEecCCCCC---------CCC----CCcceEEEEEEcC--c--ceEEEEeeCCCCCCeeeeEEEEEec-------
Q 019724            6 LDITVVSASDLKTA---------GMF----SKMNVYAVVTIFG--E--SQTTSVARDCGVRPTWNHQMRFNID-------   61 (336)
Q Consensus         6 L~V~vi~Ak~L~~~---------d~~----g~~dPYv~v~l~~--~--~~kTkv~~~~t~nP~WnE~f~F~v~-------   61 (336)
                      |.|.|++|.+|+..         ++.    --.|.||++.+..  +  .++|+++. ++..|+||..+.|.+.       
T Consensus         1 lsv~I~RA~GLqaAA~~la~~~~~l~y~a~VGVN~yv~i~lSFl~~~e~r~TrtVA-rSFcPeF~Hh~Efpc~lv~~~~~   79 (143)
T cd08683           1 LSVQIHRASGLQAAARALAEQDPSLQYSATVGVNSYVTIHLSFLPEKELRRTRTVA-RSFCPEFNHHVEFPCNLVVQRNS   79 (143)
T ss_pred             CeEEeehhhhHHHHHHHHhhhCcccccceecccceEEEEEeccCCCCceeeccchh-hhcCCCccceEEEecccEEEcCC
Confidence            57888998888621         111    1258999999653  2  28888855 5899999999999875       


Q ss_pred             -ch-hh--hcCCcEEEEEEeecCCCC----------CCcccEEEEEeceeeeccCCC
Q 019724           62 -EA-AA--MQNNLTIVYSIRSTGGCF----------GNSDLGEVFVPVKEMLLRSNG  104 (336)
Q Consensus        62 -~~-~~--~~~~~~L~v~V~d~d~~~----------~d~~LG~~~v~L~~l~~~~~~  104 (336)
                       +. ++  -.+..+|.|+||+.+..+          +|-+||.++|++.+|+.+..+
T Consensus        80 Ge~~sLAElLe~~eiil~vwHr~~~s~~~~~~~~~~~DilLG~v~IPl~~Ll~~rsG  136 (143)
T cd08683          80 GEAISLAELLESAEIILEVWHRNPKSAGDTIKIETSGDILLGTVKIPLRDLLTKRSG  136 (143)
T ss_pred             CccccHHHHhhcceEEeeeeecCCccccceeccCcCCcEEEEEEEeeHHHHhhcccC
Confidence             10 00  114577999999873222          355799999999999984444

C2cd3 is a novel C2 domain-containing protein specific to vertebrates. C2cd3 functions in regulator of cilia formation, Hedgehog signaling, and mouse embryonic development. Mutations in C2cd3 mice resulted in lethality in some cases and exencephaly, a twisted body axis, and pericardial edema in others. The presence of calcium-dependent lipid-binding domains in C2cd3 suggests a potential role in vesicular transport. C2cd3 is also an interesting candidate for ciliopathy because of its orthology to certain cilia-related genetic disease loci on chromosome. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances inc

>KOG1327 consensus Copine [Signal transduction mechanisms]

Probab=98.03  E-value=1.1e-05  Score=80.35  Aligned_cols=90  Identities=17%  Similarity=0.181  Sum_probs=70.6

Q ss_pred             EEEEecCCCCCCCCCCcceEEEEEEcC--cc----eEEEEeeCCCCCCeeeeEEEEEecchhhhcCCcEEEEEEeecCCC
Q 019724            9 TVVSASDLKTAGMFSKMNVYAVVTIFG--ES----QTTSVARDCGVRPTWNHQMRFNIDEAAAMQNNLTIVYSIRSTGGC   82 (336)
Q Consensus         9 ~vi~Ak~L~~~d~~g~~dPYv~v~l~~--~~----~kTkv~~~~t~nP~WnE~f~F~v~~~~~~~~~~~L~v~V~d~d~~   82 (336)
                      ..++|++|..+++++++|+|..+.-..  ..    +||+++ +++++|.| ..|.+.+...+..+.+..|.|++||++..
T Consensus       141 ~~~~~~~ld~kd~f~ksd~~l~~~~~~~d~s~~~~~~tEv~-~n~l~p~w-~~~~i~~~~l~~~~~~~~~~i~~~d~~~~  218 (529)
T KOG1327|consen  141 FSFRAKNLDPKDFFSKSDPYLEFYKRVDDGSTQMLYRTEVV-KNTLNPQW-APFSISLQSLCSKDGNRPIQIECYDYDSN  218 (529)
T ss_pred             eeeeeeecCcccccccCCcceEEEEecCCCceeecccccee-ccCCCCcc-cccccchhhhcccCCCCceEEEEeccCCC
Confidence            346678999999999999999987542  22    899995 45899999 45666666665445568899999999666


Q ss_pred             CCCcccEEEEEeceeeec
Q 019724           83 FGNSDLGEVFVPVKEMLL  100 (336)
Q Consensus        83 ~~d~~LG~~~v~L~~l~~  100 (336)
                      .++++||++...+.++..
T Consensus       219 ~~~~~ig~~~tt~~~~~~  236 (529)
T KOG1327|consen  219 GKHDLIGKFQTTLSELQE  236 (529)
T ss_pred             CCcCceeEecccHHHhcc
Confidence            678999999999988863

>KOG1326 consensus Membrane-associated protein FER-1 and related ferlins, contain multiple C2 domains [Cell wall/membrane/envelope biogenesis]

Probab=98.00  E-value=3e-06  Score=88.51  Aligned_cols=88  Identities=9%  Similarity=0.118  Sum_probs=73.0

Q ss_pred             EEEEEEEEecCCCCCCCCCCcceEEEEEEcCcc--eEEEEeeCCCCCCeeeeEEEEEecchhhhcCCcEEEEEEeecCCC
Q 019724            5 ALDITVVSASDLKTAGMFSKMNVYAVVTIFGES--QTTSVARDCGVRPTWNHQMRFNIDEAAAMQNNLTIVYSIRSTGGC   82 (336)
Q Consensus         5 ~L~V~vi~Ak~L~~~d~~g~~dPYv~v~l~~~~--~kTkv~~~~t~nP~WnE~f~F~v~~~~~~~~~~~L~v~V~d~d~~   82 (336)
                      .++|+|++|.+|...|.++++||||+|.++.+.  -++.- ..+++||+|.+.|.+...-..    ...|+|+|||+|..
T Consensus       614 LvrVyvv~A~~L~p~D~ng~adpYv~l~lGk~~~~d~~~y-ip~tlnPVfgkmfel~~~lp~----ek~l~v~vyd~D~~  688 (1105)
T KOG1326|consen  614 LVRVYVVEAFSLQPSDGNGDADPYVKLLLGKKRTLDRAHY-IPNTLNPVFGKMFELECLLPF----EKDLIVEVYDHDLE  688 (1105)
T ss_pred             eEEEEEEEeeeccccCCCCCcCceeeeeeccchhhhhhhc-CcCCCCcHHHHHHHhhcccch----hhcceeEEEEeecc
Confidence            467999999999999999999999999999876  44444 346899999998877654432    36799999999777


Q ss_pred             CCCcccEEEEEecee
Q 019724           83 FGNSDLGEVFVPVKE   97 (336)
Q Consensus        83 ~~d~~LG~~~v~L~~   97 (336)
                      ..|+.||+.+|.|+.
T Consensus       689 ~~d~~iget~iDLEn  703 (1105)
T KOG1326|consen  689 AQDEKIGETTIDLEN  703 (1105)
T ss_pred             cccchhhceehhhhh
Confidence            789999999999865

>PLN02964 phosphatidylserine decarboxylase

Probab=97.99  E-value=9.3e-06  Score=83.52  Aligned_cols=86  Identities=17%  Similarity=0.193  Sum_probs=69.3

Q ss_pred             ccEEEEEEEEecCCCCCCCCCCcce-EEEEEEcCcceEEEEeeCCCCCCeeeeEEEEEecchhhhcCCcEEEEEEeecCC
Q 019724            3 SRALDITVVSASDLKTAGMFSKMNV-YAVVTIFGESQTTSVARDCGVRPTWNHQMRFNIDEAAAMQNNLTIVYSIRSTGG   81 (336)
Q Consensus         3 ~g~L~V~vi~Ak~L~~~d~~g~~dP-Yv~v~l~~~~~kTkv~~~~t~nP~WnE~f~F~v~~~~~~~~~~~L~v~V~d~d~   81 (336)
                      .|.+.|+|++|+    +++   .|. |++++++.+.+||.+ ++.|.||+|||...|.|....    ....+|.|||+++
T Consensus        53 ~~~~~~~~~~~~----~~~---~~~~~~~~~~g~~~f~t~~-~~~~~~p~~~~~~~~~~~~~~----~~~~~~~~~~~~~  120 (644)
T PLN02964         53 SGIALLTLVGAE----MKF---KDKWLACVSFGEQTFRTET-SDSTDKPVWNSEKKLLLEKNG----PHLARISVFETNR  120 (644)
T ss_pred             cCeEEEEeehhh----hcc---CCcEEEEEEecceeeeecc-ccccCCcccchhhceEeccCC----cceEEEEEEecCC
Confidence            467888899887    222   365 566777778899999 566899999999999987654    2557999999988


Q ss_pred             CCCCcccEEEEEeceeeec
Q 019724           82 CFGNSDLGEVFVPVKEMLL  100 (336)
Q Consensus        82 ~~~d~~LG~~~v~L~~l~~  100 (336)
                      ...+++++.|+++|.++..
T Consensus       121 ~s~n~lv~~~e~~~t~f~~  139 (644)
T PLN02964        121 LSKNTLVGYCELDLFDFVT  139 (644)
T ss_pred             CCHHHhhhheeecHhhccH
Confidence            8889999999999888776

>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]

Probab=97.90  E-value=3.5e-05  Score=79.73  Aligned_cols=109  Identities=17%  Similarity=0.275  Sum_probs=78.6

Q ss_pred             cEEEEEEEEecCCCCCCCCCCcceEEEEEEcCcc-------eEEEEeeCCCCCCeeeeE-EEEE-ecchhhhcCCcEEEE
Q 019724            4 RALDITVVSASDLKTAGMFSKMNVYAVVTIFGES-------QTTSVARDCGVRPTWNHQ-MRFN-IDEAAAMQNNLTIVY   74 (336)
Q Consensus         4 g~L~V~vi~Ak~L~~~d~~g~~dPYv~v~l~~~~-------~kTkv~~~~t~nP~WnE~-f~F~-v~~~~~~~~~~~L~v   74 (336)
                      .+|.|+||++.-|.++.    ...||.|.+-+..       +||+++..++.||+|||. |+|. |.-..    -..|.|
T Consensus       703 ~t~sV~VISgqFLSdrk----vgtyVEVdmfgLP~Dt~Rk~~rtrt~~~n~~npvy~eepfvF~KVvLpe----LA~lRi  774 (1189)
T KOG1265|consen  703 ATLSVTVISGQFLSDRK----VGTYVEVDMFGLPTDTIRKEFRTRTVQGNSFNPVYEEEPFVFRKVVLPE----LASLRI  774 (1189)
T ss_pred             eeEEEEEEeeeeccccc----cCceEEEEecCCCchhhhhhhhhccccCCCCCcccccCCcccceecccc----hhheee
Confidence            57899999999887654    5689999987632       899999999999999865 8886 32222    268999


Q ss_pred             EEeecCCCCCCcccEEEEEeceeeeccCCCCCCCCeeeeeeCCCCCcce--EEEEEEEE
Q 019724           75 SIRSTGGCFGNSDLGEVFVPVKEMLLRSNGDDDKPMSYNITTPGGRAKG--VLNVSYKF  131 (336)
Q Consensus        75 ~V~d~d~~~~d~~LG~~~v~L~~l~~~~~~~~~~~~~~~l~~~~g~~~G--~L~lsl~~  131 (336)
                      .||++    +.+|||.-.++|..|..   +    ...+.|++..+...+  .|.|.|.+
T Consensus       775 avyeE----ggK~ig~RIlpvd~l~~---G----Yrhv~LRse~Nqpl~lp~Lfv~i~~  822 (1189)
T KOG1265|consen  775 AVYEE----GGKFIGQRILPVDGLNA---G----YRHVCLRSESNQPLTLPALFVYIVL  822 (1189)
T ss_pred             eeecc----CCceeeeeccchhcccC---c----ceeEEecCCCCCccccceeEEEEEe
Confidence            99998    67899999999987765   1    233455654444332  34444443

>cd08684 C2A_Tac2-N C2 domain first repeat found in Tac2-N (Tandem C2 protein in Nucleus)

Probab=97.88  E-value=1.5e-05  Score=60.92  Aligned_cols=90  Identities=14%  Similarity=0.201  Sum_probs=64.4

Q ss_pred             EEEEEEEecCCCCCCCCC-CcceEEEEEEcCc---ceEEEEeeCCCCCCeeeeEEEEEecchhhhcCCcEEEEEEeecCC
Q 019724            6 LDITVVSASDLKTAGMFS-KMNVYAVVTIFGE---SQTTSVARDCGVRPTWNHQMRFNIDEAAAMQNNLTIVYSIRSTGG   81 (336)
Q Consensus         6 L~V~vi~Ak~L~~~d~~g-~~dPYv~v~l~~~---~~kTkv~~~~t~nP~WnE~f~F~v~~~~~~~~~~~L~v~V~d~d~   81 (336)
                      +.++|+.|++|.--...+ ...-|++--+.-.   .+||.+ +++..||+|+|+|.|.+....+  .+..|.|.|++.  
T Consensus         1 iwitv~~c~d~s~~~~~~e~~~i~ikg~~tl~kpv~~KsS~-rrgs~d~~f~ETFVFqi~l~qL--~~V~L~fsv~~~--   75 (103)
T cd08684           1 IWITVLKCKDLSWPSSCGENPTIYIKGILTLPKPVHFKSSA-KEGSNDIEFMETFVFAIKLQNL--QTVRLVFKIQTQ--   75 (103)
T ss_pred             CEEEEEEecccccccccCcCCeeEEEEEEecCCCccccchh-hcCCCChhHHHHHHHHHHHhhc--cceEEEEEeecc--
Confidence            358899999996433222 2345665333322   288887 7788999999999999865433  346788899884  


Q ss_pred             CCCCcccEEEEEeceeeec
Q 019724           82 CFGNSDLGEVFVPVKEMLL  100 (336)
Q Consensus        82 ~~~d~~LG~~~v~L~~l~~  100 (336)
                      +.+.+.||+|.+.|+++-+
T Consensus        76 ~~RKe~iG~~sL~l~s~ge   94 (103)
T cd08684          76 TPRKRTIGECSLSLRTLST   94 (103)
T ss_pred             CCccceeeEEEeecccCCH
Confidence            5577889999999988765

Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphos

>PF15627 CEP76-C2: CEP76 C2 domain

Probab=97.74  E-value=0.00038  Score=59.20  Aligned_cols=130  Identities=15%  Similarity=0.229  Sum_probs=87.8

Q ss_pred             ccEEEEEEEEecCCCCCCCC--CCcc--eEEEEEEcCcceEEEEeeCCCCCCeeeeEEEEEecchhhh---------cCC
Q 019724            3 SRALDITVVSASDLKTAGMF--SKMN--VYAVVTIFGESQTTSVARDCGVRPTWNHQMRFNIDEAAAM---------QNN   69 (336)
Q Consensus         3 ~g~L~V~vi~Ak~L~~~d~~--g~~d--PYv~v~l~~~~~kTkv~~~~t~nP~WnE~f~F~v~~~~~~---------~~~   69 (336)
                      ..-|+|+|+.+|-.......  +..+  -.+-+.+.++.++|+.+ .++.+|.|+|.|.|++......         .-.
T Consensus         8 ~~yL~l~vlgGkAFld~l~~~~~~~~s~~~l~l~f~~QRF~S~~V-p~~~eP~f~e~Flf~l~~~~~~~~~~~~~lls~~   86 (156)
T PF15627_consen    8 RRYLHLRVLGGKAFLDHLQEPEGQVCSTFTLHLHFRGQRFRSKPV-PCACEPDFNEEFLFELPRDSFGAGSTATTLLSIS   86 (156)
T ss_pred             ceEEEEEEeCchhHhhhhhccCCCCceEEEEEEEecCceEecCCc-ccccCCCCCCcEEEEecccccccccchhHhhcCC
Confidence            35688999998865432110  2333  34455667888999984 5789999999999999765311         123


Q ss_pred             cEEEEEEeecCCCCCCcccEEEEEeceeeeccCCCCCCCCeeeeeeCCCCC---cceEEEEEEEEcccC
Q 019724           70 LTIVYSIRSTGGCFGNSDLGEVFVPVKEMLLRSNGDDDKPMSYNITTPGGR---AKGVLNVSYKFGPSS  135 (336)
Q Consensus        70 ~~L~v~V~d~d~~~~d~~LG~~~v~L~~l~~~~~~~~~~~~~~~l~~~~g~---~~G~L~lsl~~~~~~  135 (336)
                      ..|++.|...|......++|+-.+.-..++......  .+...+|......   ..|.|.|+|++.+..
T Consensus        87 ~pihivli~~d~~~~~~Lv~s~~ldWR~vL~s~~~~--~~~~vEL~G~~~e~kv~~GiL~l~lELlP~~  153 (156)
T PF15627_consen   87 DPIHIVLIRTDPSGETTLVGSHFLDWRKVLCSGNGS--TSFTVELCGVGPESKVPVGILDLRLELLPNL  153 (156)
T ss_pred             CceEEEEEEecCCCceEeeeeceehHHHHhccCCCc--cceeEEEeccCCCCccceeEEEEEEEeecCC
Confidence            457777776645445588999999888887744332  2455666553333   689999999998754

>PF10358 NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins; InterPro: IPR019448 This entry represents the N-terminal 150 residues of a family of conserved proteins which are induced by oestrogen []

Probab=97.71  E-value=0.0014  Score=54.86  Aligned_cols=125  Identities=17%  Similarity=0.184  Sum_probs=78.6

Q ss_pred             EEEEEEEEecCCCCCCCCCCcceEEEEEEcCcc---eEEEEeeCCCCCCeeeeEEEEEecchh----hhcCCcEEEEEEe
Q 019724            5 ALDITVVSASDLKTAGMFSKMNVYAVVTIFGES---QTTSVARDCGVRPTWNHQMRFNIDEAA----AMQNNLTIVYSIR   77 (336)
Q Consensus         5 ~L~V~vi~Ak~L~~~d~~g~~dPYv~v~l~~~~---~kTkv~~~~t~nP~WnE~f~F~v~~~~----~~~~~~~L~v~V~   77 (336)
                      .+.|+|++..+++.    .....+|+.......   .+|+.....+..-.|||+|.|.+.-..    ..-....|+|.|+
T Consensus         8 ~~~l~i~~l~~~p~----~~~~v~v~wkr~~~~~~~~~t~~~~~~~~~v~w~e~~~~~~tl~~~~k~~~~~~K~~~~~v~   83 (143)
T PF10358_consen    8 QFDLTIHELENLPS----SNGKVFVKWKRGDKSKGSGTTSRANVKNGKVQWNEEFSFPCTLYRDKKSKEFQPKELKFSVF   83 (143)
T ss_pred             EEEEEEEEeECcCC----CCCEEEEEEEECCCCccceeeeeeeccccEEEEeeEEEEEEEEEEcCCCCcEeeEEEEEEEE
Confidence            46788889888875    224456666555543   455554555667899999988764321    1123456888888


Q ss_pred             ecCCCCCCcccEEEEEeceeeeccCCCCCCCCeeeeeeCCCCCcceEEEEEEEEcccCC
Q 019724           78 STGGCFGNSDLGEVFVPVKEMLLRSNGDDDKPMSYNITTPGGRAKGVLNVSYKFGPSSS  136 (336)
Q Consensus        78 d~d~~~~d~~LG~~~v~L~~l~~~~~~~~~~~~~~~l~~~~g~~~G~L~lsl~~~~~~~  136 (336)
                      ..........||++.|+|+++.....  ......+.|... ......|+|+|.+.....
T Consensus        84 ~~~~~~~k~~lG~~~inLaey~~~~~--~~~~~~~~l~~~-~~~~a~L~isi~~~~~~~  139 (143)
T PF10358_consen   84 EVDGSGKKKVLGKVSINLAEYANEDE--EPITVRLLLKKC-KKSNATLSISISLSELRE  139 (143)
T ss_pred             EecCCCccceEEEEEEEHHHhhCcCC--CcEEEEEeCccC-CCCCcEEEEEEEEEECcc
Confidence            76322222589999999999987321  112344555432 355678888888776543

Proteins in this entry are usually annotated as Fam102A, Fam102B, or Eeig1 (early oestrogen-responsive gene product 1).

>KOG1326 consensus Membrane-associated protein FER-1 and related ferlins, contain multiple C2 domains [Cell wall/membrane/envelope biogenesis]

Probab=97.58  E-value=2.2e-05  Score=82.27  Aligned_cols=124  Identities=17%  Similarity=0.116  Sum_probs=90.3

Q ss_pred             EEEEEEEecCCCCCCCCCCcceEEEEEEcCcceEEEEeeCCCCCCeeeeEEEEEecch-----hhhcCCcEEEEEEeecC
Q 019724            6 LDITVVSASDLKTAGMFSKMNVYAVVTIFGESQTTSVARDCGVRPTWNHQMRFNIDEA-----AAMQNNLTIVYSIRSTG   80 (336)
Q Consensus         6 L~V~vi~Ak~L~~~d~~g~~dPYv~v~l~~~~~kTkv~~~~t~nP~WnE~f~F~v~~~-----~~~~~~~~L~v~V~d~d   80 (336)
                      |++.|.+|+.|...+..+.+|+|+.|.+.+..++|.++ .+|+||.||.+++|.-.+.     ....+-..++|+|||.|
T Consensus       208 lR~yiyQar~L~a~dk~~~sdp~a~v~f~~qs~~T~~v-~~tl~ptwdq~~~f~~~ei~ge~~~~~~~ppi~v~e~yd~d  286 (1105)
T KOG1326|consen  208 LRSYIYQARALGAPDKDDESDPDAAVEFCGQSKETEVV-PGTLNPTWDQTIIFDEVEIYGEAHLVLKNPPIRVFEVYDLD  286 (1105)
T ss_pred             hHHHHHHHHhhcCCCcccCCCchhhhhcccccceeEee-cCcCCCCccceeeccceeecCccchhhcCCCeEEEEeehhh
Confidence            45566788899888888889999999999999999995 5689999999999863221     11223466899999998


Q ss_pred             CCCCCcccEEEEEeceeeeccCCCCCCCCeeeeeeCCCCCcceEEEEEEEEcccCC
Q 019724           81 GCFGNSDLGEVFVPVKEMLLRSNGDDDKPMSYNITTPGGRAKGVLNVSYKFGPSSS  136 (336)
Q Consensus        81 ~~~~d~~LG~~~v~L~~l~~~~~~~~~~~~~~~l~~~~g~~~G~L~lsl~~~~~~~  136 (336)
                      +...++|+|++.+....++.  .+   ...|+++.+ .+...|++.++.++.....
T Consensus       287 r~g~~ef~gr~~~~p~V~~~--~p---~lkw~p~~r-g~~l~gd~l~a~eliq~~~  336 (1105)
T KOG1326|consen  287 RSGINEFKGRKKQRPYVMVQ--CP---ALKWVPTMR-GAFLDGDVLIAAELIQIGK  336 (1105)
T ss_pred             hhchHHhhcccccceEEEec--CC---ccceEEeec-ccccccchhHHHHHHhhcC
Confidence            88899999998877665554  22   234566653 4555677766665544433

>PF12416 DUF3668: Cep120 protein; InterPro: IPR022136 This domain family is found in eukaryotes, and is typically between 75 and 114 amino acids in length

Probab=97.50  E-value=0.0021  Score=61.69  Aligned_cols=126  Identities=14%  Similarity=0.215  Sum_probs=93.6

Q ss_pred             EEEEEEEecCCCCCCCCCCcceEEEEEEcCcceEEEEeeCCCCCCeeeeEEEEEecchhhh---cCCcEEEEEEeecC-C
Q 019724            6 LDITVVSASDLKTAGMFSKMNVYAVVTIFGESQTTSVARDCGVRPTWNHQMRFNIDEAAAM---QNNLTIVYSIRSTG-G   81 (336)
Q Consensus         6 L~V~vi~Ak~L~~~d~~g~~dPYv~v~l~~~~~kTkv~~~~t~nP~WnE~f~F~v~~~~~~---~~~~~L~v~V~d~d-~   81 (336)
                      +.|.|+++|+....   -+..-.|..+++++...|..+ ..+-.|.||..+.|+++...+.   ..+.-|+|++|..| .
T Consensus         2 ivl~i~egr~F~~~---~~~~~vv~a~~ng~~l~TDpv-~~~~~p~f~teL~WE~Dr~~l~~~r~~~tPiKl~c~a~~~~   77 (340)
T PF12416_consen    2 IVLSILEGRNFPQR---PRHPIVVEAKFNGESLETDPV-PHTESPQFNTELAWECDRKALKQHRLQRTPIKLQCFAVDGS   77 (340)
T ss_pred             EEEEEecccCCCCC---CCccEEEEEEeCCceeeecCC-CCCCCceeecceeeeccHHHHHHhhccCCceEEEEEEecCC
Confidence            67899999998765   245678888999999889874 4578999999999999765432   34677999999986 3


Q ss_pred             CCCCcccEEEEEeceee---eccCCCCCCCCeeeeeeCCC---CCcceEEEEEEEEcccCCC
Q 019724           82 CFGNSDLGEVFVPVKEM---LLRSNGDDDKPMSYNITTPG---GRAKGVLNVSYKFGPSSSA  137 (336)
Q Consensus        82 ~~~d~~LG~~~v~L~~l---~~~~~~~~~~~~~~~l~~~~---g~~~G~L~lsl~~~~~~~~  137 (336)
                      ....+.||.+.++|..+   ..+..  ..+..||.|...+   .+.+=+|.|+|.+..+...
T Consensus        78 ~~~re~iGyv~LdLRsa~~~~~~~~--~~~~~W~~LL~~~~~y~~~KPEl~l~l~ie~~~~~  137 (340)
T PF12416_consen   78 TGKRESIGYVVLDLRSAVVPQEKNQ--KQKPKWYKLLSSSSKYKKHKPELLLSLSIEDDSKP  137 (340)
T ss_pred             CCcceeccEEEEEcccccccccccc--ccCCCeeEccccccccccCCccEEEEEEEeccccc
Confidence            44677899999999988   33111  1255788887642   2246689999998877654

>cd08693 C2_PI3K_class_I_beta_delta C2 domain present in class I beta and delta phosphatidylinositol 3-kinases (PI3Ks)

Probab=97.46  E-value=0.00083  Score=58.51  Aligned_cols=91  Identities=22%  Similarity=0.275  Sum_probs=58.9

Q ss_pred             ccEEEEEEEEecCCCCCCCCCCcceEEEEEEcC--cc----eEEEEeeCCCCCCeeeeEEEEEecchhhhcCCcEEEEEE
Q 019724            3 SRALDITVVSASDLKTAGMFSKMNVYAVVTIFG--ES----QTTSVARDCGVRPTWNHQMRFNIDEAAAMQNNLTIVYSI   76 (336)
Q Consensus         3 ~g~L~V~vi~Ak~L~~~d~~g~~dPYv~v~l~~--~~----~kTkv~~~~t~nP~WnE~f~F~v~~~~~~~~~~~L~v~V   76 (336)
                      ...++|+|+++.+|...  ....+.||++.|-.  +.    .+|+.+. ...++.|||.+.|+|.-..+ .....|.|.|
T Consensus         7 ~~~f~i~i~~~~~~~~~--~~~~~l~V~~~lyhG~~~L~~p~~T~~~~-~~~~~~Wnewl~F~I~i~dL-Pr~ArLciti   82 (173)
T cd08693           7 EEKFSITLHKISNLNAA--ERTMKVGVQAGLFHGGESLCKTVKTSEVS-GKNDPVWNETLEFDINVCDL-PRMARLCFAI   82 (173)
T ss_pred             CCCEEEEEEEeccCccC--CCCceEEEEEEEEECCEEccCceEccccC-CCCccccceeEEcccchhcC-ChhHeEEEEE
Confidence            35789999999998752  23467788876543  22    4555422 24679999999998754322 2457899999


Q ss_pred             eecCCCC----------------CCcccEEEEEecee
Q 019724           77 RSTGGCF----------------GNSDLGEVFVPVKE   97 (336)
Q Consensus        77 ~d~d~~~----------------~d~~LG~~~v~L~~   97 (336)
                      |+.....                .+..||.+.+.|-+
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~n~~LFd  119 (173)
T cd08693          83 YEVSKKAKGKRSRKNQTKKKKKKDDNPIAWVNTMVFD  119 (173)
T ss_pred             EEecccccccccccccccccccCcceEEEEEeEEEEc
Confidence            9863221                13457777776654

PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, beta and delta isoforms of PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Ty

>cd08398 C2_PI3K_class_I_alpha C2 domain present in class I alpha phosphatidylinositol 3-kinases (PI3Ks)

Probab=97.38  E-value=0.0013  Score=56.31  Aligned_cols=89  Identities=17%  Similarity=0.225  Sum_probs=59.9

Q ss_pred             ccEEEEEEEEecCCCCCCCCCCcceEEEEEEcCcc------eEEEEeeCCCCCCeeeeEEEEEecchhhhcCCcEEEEEE
Q 019724            3 SRALDITVVSASDLKTAGMFSKMNVYAVVTIFGES------QTTSVARDCGVRPTWNHQMRFNIDEAAAMQNNLTIVYSI   76 (336)
Q Consensus         3 ~g~L~V~vi~Ak~L~~~d~~g~~dPYv~v~l~~~~------~kTkv~~~~t~nP~WnE~f~F~v~~~~~~~~~~~L~v~V   76 (336)
                      .+.|+|+|++++++...+   ..|-||++.|-...      ..|+-+.  ..++.|||-++|+|.-..+ .....|.|+|
T Consensus         7 ~~~~~v~i~~~~~~~~~~---~~~l~V~v~l~~g~~~L~~pv~T~~v~--~~~~~WnEwL~fpI~i~dL-Pr~ArL~iti   80 (158)
T cd08398           7 NSNLRIKILCATYVNVND---IDKIYVRTGIYHGGEPLCDNVNTQRVP--CSNPRWNEWLDYDIYIPDL-PRSARLCLSI   80 (158)
T ss_pred             CCCeEEEEEeeccCCCCC---cCeEEEEEEEEECCEEccCeeEecccC--CCCCccceeEEcccchhcC-ChhheEEEEE
Confidence            357899999999887543   35788888765432      3444322  2679999999998754332 2457899999


Q ss_pred             eecCCCC----CCcccEEEEEecee
Q 019724           77 RSTGGCF----GNSDLGEVFVPVKE   97 (336)
Q Consensus        77 ~d~d~~~----~d~~LG~~~v~L~~   97 (336)
                      |+.....    ....||.+.+.|=+
T Consensus        81 ~~~~~~~~~k~~~~~iG~~ni~LFd  105 (158)
T cd08398          81 CSVKGRKGAKEEHCPLAWGNINLFD  105 (158)
T ss_pred             EEEecccCCCCceEEEEEEEEEEEC
Confidence            9973321    12358998888765

PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, alpha isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a c

>KOG2060 consensus Rab3 effector RIM1 and related proteins, contain PDZ and C2 domains [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.17  E-value=0.00036  Score=66.45  Aligned_cols=105  Identities=18%  Similarity=0.187  Sum_probs=74.8

Q ss_pred             ccEEEEEEEEecCCCCCCC-CCCcceEEEEEEcCcc-----eEEEEeeCCCCCCeeeeEEEEEecchhhhcCCcEEEEEE
Q 019724            3 SRALDITVVSASDLKTAGM-FSKMNVYAVVTIFGES-----QTTSVARDCGVRPTWNHQMRFNIDEAAAMQNNLTIVYSI   76 (336)
Q Consensus         3 ~g~L~V~vi~Ak~L~~~d~-~g~~dPYv~v~l~~~~-----~kTkv~~~~t~nP~WnE~f~F~v~~~~~~~~~~~L~v~V   76 (336)
                      ++.|+|.|++|++|..+.- ...+++||+|.+....     .+|+..+ ++.+|.+-..+.|+-...     ...|.+.|
T Consensus       268 ~g~l~vEii~ar~l~~k~~~k~~~apyVkVYlL~~g~c~ak~ktk~A~-kT~~plyqq~l~f~~sp~-----~k~Lq~tv  341 (405)
T KOG2060|consen  268 KGDLEVEIIRARGLVVKPGSKSLPAPYVKVYLLENGFCIAKKKTKSAR-KTLDPLYQQQLSFDQSPP-----GKYLQGTV  341 (405)
T ss_pred             cCceeEEEEecccccccCCcccccCceeEEEEcCCCceeccccccccc-ccCchhhhhhhhhccCCC-----ccEEEEEE
Confidence            6789999999999975432 2368899999988654     7788755 467777767777776544     37899999


Q ss_pred             ee-cCCCCCCcccEEEEEeceeeeccCCCCCCCCeeeeeeC
Q 019724           77 RS-TGGCFGNSDLGEVFVPVKEMLLRSNGDDDKPMSYNITT  116 (336)
Q Consensus        77 ~d-~d~~~~d~~LG~~~v~L~~l~~~~~~~~~~~~~~~l~~  116 (336)
                      |. +.++-++.|+|.++|-|.+|-.....   ...||.|.-
T Consensus       342 ~gdygRmd~k~fmg~aqi~l~eL~ls~~~---~igwyKlfg  379 (405)
T KOG2060|consen  342 WGDYGRMDHKSFMGVAQIMLDELNLSSSP---VIGWYKLFG  379 (405)
T ss_pred             eccccccchHHHhhHHHHHhhhhcccccc---ceeeeeccC
Confidence            95 43444678999999988887652211   235676653

>cd08380 C2_PI3K_like C2 domain present in phosphatidylinositol 3-kinases (PI3Ks)

Probab=97.14  E-value=0.0031  Score=53.75  Aligned_cols=91  Identities=20%  Similarity=0.264  Sum_probs=59.5

Q ss_pred             cEEEEEEEEecCCCCCCCCCCcceEEEEEEcCcc------eEEEEeeCCCCCCeeeeEEEEEecchhhhcCCcEEEEEEe
Q 019724            4 RALDITVVSASDLKTAGMFSKMNVYAVVTIFGES------QTTSVARDCGVRPTWNHQMRFNIDEAAAMQNNLTIVYSIR   77 (336)
Q Consensus         4 g~L~V~vi~Ak~L~~~d~~g~~dPYv~v~l~~~~------~kTkv~~~~t~nP~WnE~f~F~v~~~~~~~~~~~L~v~V~   77 (336)
                      ..++|+|....++...+ ....+.||++.|-...      ..|+. .....+..|||.+.|++.-..+ .....|.|.||
T Consensus         8 ~~~~i~i~~~~~~~~~~-~~~~~l~V~~~l~~g~~~l~~~~~t~~-~~~~~~~~Wne~l~F~i~~~~L-P~~arL~itl~   84 (156)
T cd08380           8 FNLRIKIHGITNINLLD-SEDLKLYVRVQLYHGGEPLCPPQSTKK-VPFSTSVTWNEWLTFDILISDL-PREARLCLSIY   84 (156)
T ss_pred             CCeEEEEEeeccccccC-CCceeEEEEEEEEECCEEccCceeccC-CcCCCCCcccceeEccchhhcC-ChhheEEEEEE
Confidence            46788888887775411 2346778887665322      34443 2223679999999998654332 23578999999


Q ss_pred             ecCCCC--CCcccEEEEEecee
Q 019724           78 STGGCF--GNSDLGEVFVPVKE   97 (336)
Q Consensus        78 d~d~~~--~d~~LG~~~v~L~~   97 (336)
                      +.+...  .+..||.+.++|=+
T Consensus        85 ~~~~~~~~~~~~iG~~~~~lFd  106 (156)
T cd08380          85 AVSEPGSKKEVPLGWVNVPLFD  106 (156)
T ss_pred             EEecCCCCcceEEEEEeEEeEc
Confidence            874332  35789999998765

C2 domain present in all classes of PI3Ks. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm

>cd04012 C2A_PI3K_class_II C2 domain first repeat present in class II phosphatidylinositol 3-kinases (PI3Ks)

Probab=97.07  E-value=0.0022  Score=55.68  Aligned_cols=94  Identities=20%  Similarity=0.282  Sum_probs=61.2

Q ss_pred             ccEEEEEEEEecCCCCCCCCCCcceEEEEEEcCcc------eEEEEee---CCCCCCeeeeEEEEEecchhhhcCCcEEE
Q 019724            3 SRALDITVVSASDLKTAGMFSKMNVYAVVTIFGES------QTTSVAR---DCGVRPTWNHQMRFNIDEAAAMQNNLTIV   73 (336)
Q Consensus         3 ~g~L~V~vi~Ak~L~~~d~~g~~dPYv~v~l~~~~------~kTkv~~---~~t~nP~WnE~f~F~v~~~~~~~~~~~L~   73 (336)
                      ...|.|+|.++.++.........|-||.+.|-...      ..|+...   .-..+..|||.+.|++.-..+ .....|.
T Consensus         7 ~~~~~i~v~~~h~~~~~~~~~~~~~~v~~~l~~g~~~L~~~~~T~~~~~~~~f~~~~~Wnewl~F~i~i~~L-PrearL~   85 (171)
T cd04012           7 TDLLSVTVSSLHRIPPTWVQSFEDFYLSCSLYHGGRLLCSPVTTKPVKITKSFFPRVVWDEWIEFPIPVCQL-PRESRLV   85 (171)
T ss_pred             cccEEEEEEEeecCChHHhhccccEEEEEEEEECCEECcCceeccccccccCccccccccceEECccchhcC-ChhHEEE
Confidence            34688999999998765543457788888765422      3444211   112357799999998754332 3457899


Q ss_pred             EEEeecCCCC---------CCcccEEEEEecee
Q 019724           74 YSIRSTGGCF---------GNSDLGEVFVPVKE   97 (336)
Q Consensus        74 v~V~d~d~~~---------~d~~LG~~~v~L~~   97 (336)
                      |.||+.....         .+..||.+.++|=+
T Consensus        86 itl~~~~~~~~~~~~~~~~~~~~lG~~~~~LFd  118 (171)
T cd04012          86 LTLYGTTSSPDGGSNKQRMGPEELGWVSLPLFD  118 (171)
T ss_pred             EEEEEEecCCccccccccccceEEEEEeEeeEc
Confidence            9999863322         24568888887655

There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. Class II PIK3s act downstream of receptors for growth factors, integrins, and chemokines. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that c

>cd08687 C2_PKN-like C2 domain in Protein kinase C-like (PKN) proteins

Probab=97.05  E-value=0.005  Score=47.43  Aligned_cols=84  Identities=11%  Similarity=0.142  Sum_probs=58.9

Q ss_pred             CcceEEEEEEcCcc-eEEEEeeCCCCCCeeeeEEEEEecchhhhcCCcEEEEEEeecCCCCCCcccEEEEEeceeeeccC
Q 019724           24 KMNVYAVVTIFGES-QTTSVARDCGVRPTWNHQMRFNIDEAAAMQNNLTIVYSIRSTGGCFGNSDLGEVFVPVKEMLLRS  102 (336)
Q Consensus        24 ~~dPYv~v~l~~~~-~kTkv~~~~t~nP~WnE~f~F~v~~~~~~~~~~~L~v~V~d~d~~~~d~~LG~~~v~L~~l~~~~  102 (336)
                      ..+..+++.+++.. ..|.- +. -.+-.|+++|.|+++..      ++|+|.||-+|-   ..+.|...+.|.+...  
T Consensus         8 ~~eV~avLklDn~~VgqT~W-k~-~s~q~WDQ~Fti~LdRs------RELEI~VywrD~---RslCav~~lrLEd~~~--   74 (98)
T cd08687           8 CSEVSAVLKLDNTVVGQTQW-KP-KSNQAWDQSFTLELERS------RELEIAVYWRDW---RSLCAVKFLKLEDERH--   74 (98)
T ss_pred             ccceEEEEEEcCeEEeeccc-cc-cccccccceeEEEeecc------cEEEEEEEEecc---hhhhhheeeEhhhhcc--
Confidence            36788999999865 55554 32 35889999999999764      799999998732   4567777888877432  


Q ss_pred             CCCCCCCeeeeeeCCCCCcceEEEEEEEE
Q 019724          103 NGDDDKPMSYNITTPGGRAKGVLNVSYKF  131 (336)
Q Consensus       103 ~~~~~~~~~~~l~~~~g~~~G~L~lsl~~  131 (336)
                      .      ..+.     -.++|.|...++|
T Consensus        75 ~------~~~~-----lepqg~l~~ev~f   92 (98)
T cd08687          75 E------VQLD-----MEPQLCLVAELTF   92 (98)
T ss_pred             c------ceec-----cccccEEEEEEEe
Confidence            1      1222     3457888888777

PKN is a lipid-activated serine/threonine kinase. It is a member of the protein kinase C (PKC) superfamily, but lacks a C1 domain. There are at least 3 different isoforms of PKN (PRK1/PKNalpha/PAK1; PKNbeta, and PRK2/PAK2/PKNgamma). The C-terminal region contains the Ser/Thr type protein kinase domain, while the N-terminal region of PKN contains three antiparallel coiled-coil (ACC) finger domains which are relatively rich in charged residues and contain a leucine zipper-like sequence. These domains binds to the small GTPase RhoA. Following these domains is a C2-like domain. Its C-terminal part functions as an auto-inhibitory region. PKNs are not activated by classical PKC activators such as diacylglycerol, phorbol ester or Ca2+, but instead are activated by phospholipids and unsaturated fatty acids. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 struct

>cd08399 C2_PI3K_class_I_gamma C2 domain present in class I gamma phosphatidylinositol 3-kinases (PI3Ks)

Probab=97.01  E-value=0.008  Score=52.50  Aligned_cols=73  Identities=14%  Similarity=0.162  Sum_probs=46.7

Q ss_pred             cEEEEEEEEecCCCCCCCCCCcceEEEEEEcCcc-----eEEEEeeCCCCCCeeeeEEEEEecchhhhcCCcEEEEEEee
Q 019724            4 RALDITVVSASDLKTAGMFSKMNVYAVVTIFGES-----QTTSVARDCGVRPTWNHQMRFNIDEAAAMQNNLTIVYSIRS   78 (336)
Q Consensus         4 g~L~V~vi~Ak~L~~~d~~g~~dPYv~v~l~~~~-----~kTkv~~~~t~nP~WnE~f~F~v~~~~~~~~~~~L~v~V~d   78 (336)
                      ..++|+|+++..+. .+.......||++.|-...     .+|+... -+.++.|||-+.|+|.-..+ .....|+|.||+
T Consensus        10 ~~friki~~~~~~~-~~~~~~~~l~V~~~Ly~g~~~l~~~~T~~~~-~~~~~~WnEwL~f~I~~~dL-P~~arLc~ti~~   86 (178)
T cd08399          10 RKFRVKILGIDIPV-LPRNTDLTVFVEANIQHGQQVLCQRRTSPKP-FTEEVLWNTWLEFDIKIKDL-PKGALLNLQIYC   86 (178)
T ss_pred             CCEEEEEEeecccC-cCCCCceEEEEEEEEEECCeecccceeeccC-CCCCccccccEECccccccC-ChhhEEEEEEEE
Confidence            46888888887432 2223334577777654322     3555433 35679999999998754432 235789999998


Q ss_pred             c
Q 019724           79 T   79 (336)
Q Consensus        79 ~   79 (336)
                      .
T Consensus        87 ~   87 (178)
T cd08399          87 G   87 (178)
T ss_pred             E
Confidence            6

PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, gamma isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a cir

>PF11618 DUF3250: Protein of unknown function (DUF3250); InterPro: IPR021656 This family of proteins represents a protein with unknown function

Probab=96.98  E-value=0.0027  Score=50.80  Aligned_cols=100  Identities=14%  Similarity=0.231  Sum_probs=55.1

Q ss_pred             EEEEEEcC-cceEEEEeeCCCCCCeeeeEEEEEecchhhh---cCCcEEEEEEeecCCCCCCcccEEEEEeceeeeccCC
Q 019724           28 YAVVTIFG-ESQTTSVARDCGVRPTWNHQMRFNIDEAAAM---QNNLTIVYSIRSTGGCFGNSDLGEVFVPVKEMLLRSN  103 (336)
Q Consensus        28 Yv~v~l~~-~~~kTkv~~~~t~nP~WnE~f~F~v~~~~~~---~~~~~L~v~V~d~d~~~~d~~LG~~~v~L~~l~~~~~  103 (336)
                      ||.+.+.. +.+.|.++.  +.+|.+|.+..|.|....+-   .....|.|||+.. .....+.||.++|+|.+++++..
T Consensus         2 Fct~dFydfEtq~Tpvv~--G~~p~y~fts~y~V~~d~~fl~YLq~~~~~lELhqa-~g~d~~tla~~~i~l~~ll~~~~   78 (107)
T PF11618_consen    2 FCTYDFYDFETQTTPVVR--GLNPFYDFTSQYKVTMDDLFLHYLQTGSLTLELHQA-LGSDFETLAAGQISLRPLLESNG   78 (107)
T ss_dssp             EEEE-STT---EE---EE--SSS----EEEEEEE--SHHHHHHHHH--EEEEEEEE--SS-EEEEEEEEE--SHHHH--S
T ss_pred             EEEEEeeceeeeccccee--CCCccceeEEEEEEEcCHHHHHHhhcCCEEEEEEee-ccCCeEEEEEEEeechhhhcCCC
Confidence            66666554 448888865  68999999998888654321   1246799999987 43346679999999999996322


Q ss_pred             CCCCCCeeeeeeCCCCCcceEEEEEEEEc
Q 019724          104 GDDDKPMSYNITTPGGRAKGVLNVSYKFG  132 (336)
Q Consensus       104 ~~~~~~~~~~l~~~~g~~~G~L~lsl~~~  132 (336)
                      .  ....+..+...+++.-|.|.+.+++.
T Consensus        79 ~--~i~~~~~l~g~~~~~~g~l~y~~rl~  105 (107)
T PF11618_consen   79 E--RIHGSATLVGVSGEDFGTLEYWIRLR  105 (107)
T ss_dssp             ----EEEEEEE-BSSS-TSEEEEEEEEEE
T ss_pred             c--eEEEEEEEeccCCCeEEEEEEEEEec
Confidence            1  12345666666777899999988875

It may be the C2 domain from KIAA1005 however this cannot be confirmed. ; PDB: 2YRB_A.

>KOG1452 consensus Predicted Rho GTPase-activating protein [Signal transduction mechanisms]

Probab=96.73  E-value=0.0034  Score=58.66  Aligned_cols=116  Identities=11%  Similarity=0.074  Sum_probs=73.8

Q ss_pred             ccEEEEEEEEecCCCCCCC--CCCcceEEEEEEcCcc-eEEEEeeCCCCCCeeeeEEEEEecchhhhcCCcEEEEEEeec
Q 019724            3 SRALDITVVSASDLKTAGM--FSKMNVYAVVTIFGES-QTTSVARDCGVRPTWNHQMRFNIDEAAAMQNNLTIVYSIRST   79 (336)
Q Consensus         3 ~g~L~V~vi~Ak~L~~~d~--~g~~dPYv~v~l~~~~-~kTkv~~~~t~nP~WnE~f~F~v~~~~~~~~~~~L~v~V~d~   79 (336)
                      .|.|.|++..+|+|+-...  .-..+-||++.++.+. .||.| +..+..=.|.|+|..+|.+.      ..|.+-||.|
T Consensus        50 tGiL~~H~~~GRGLr~~p~~kglt~~~ycVle~drqh~aRt~v-rs~~~~f~w~e~F~~Dvv~~------~vl~~lvySW  122 (442)
T KOG1452|consen   50 TGILYFHAYNGRGLRMTPQQKGLTVCFYCVLEPDRQHPARTRV-RSSGPGFAWAEDFKHDVVNI------EVLHYLVYSW  122 (442)
T ss_pred             cceEEEEEecccccccChhccCceeeeeeeeeecccCcccccc-ccCCCCccchhhceeecccc------eeeeEEEeec
Confidence            5789999999999975432  2345789999988765 66766 54455668999999988654      5789999999


Q ss_pred             CCCCCCcccEEEEEeceeeeccCCCCCCCCeeeeeeCCCCCcceEEEEEEEEcc
Q 019724           80 GGCFGNSDLGEVFVPVKEMLLRSNGDDDKPMSYNITTPGGRAKGVLNVSYKFGP  133 (336)
Q Consensus        80 d~~~~d~~LG~~~v~L~~l~~~~~~~~~~~~~~~l~~~~g~~~G~L~lsl~~~~  133 (336)
                      +.-.++++.=.--|.+..+.+. +. + +  .+.|.   -+++|.+-|.|.+..
T Consensus       123 ~pq~RHKLC~~g~l~~~~v~rq-sp-d-~--~~Al~---lePrgq~~~r~~~~D  168 (442)
T KOG1452|consen  123 PPQRRHKLCHLGLLEAFVVDRQ-SP-D-R--VVALY---LEPRGQPPLRLPLAD  168 (442)
T ss_pred             Cchhhccccccchhhhhhhhhc-CC-c-c--eeeee---cccCCCCceecccCC
Confidence            6666777632223333333331 11 1 1  12222   245666666666553

>cd08397 C2_PI3K_class_III C2 domain present in class III phosphatidylinositol 3-kinases (PI3Ks)

Probab=96.40  E-value=0.011  Score=50.79  Aligned_cols=73  Identities=15%  Similarity=0.281  Sum_probs=50.2

Q ss_pred             CCcceEEEEEEcCcc------eEEEEeeCCCCCCeeeeEEEEEecchhhhcCCcEEEEEEeecCCCCCCcccEEEEEece
Q 019724           23 SKMNVYAVVTIFGES------QTTSVARDCGVRPTWNHQMRFNIDEAAAMQNNLTIVYSIRSTGGCFGNSDLGEVFVPVK   96 (336)
Q Consensus        23 g~~dPYv~v~l~~~~------~kTkv~~~~t~nP~WnE~f~F~v~~~~~~~~~~~L~v~V~d~d~~~~d~~LG~~~v~L~   96 (336)
                      ...|-||++.|-...      .+|+. +.-+....|||-+.|.|.-..+ ..+..|+|+||+.+.......||.++++|=
T Consensus        28 ~~~~l~V~~~l~~~~~~L~~pv~T~~-~~f~~~~~WnEwl~fpI~i~dL-P~~a~L~iti~~~~~~~~~~~vg~~~~~lF  105 (159)
T cd08397          28 PNSDLFVTCQVFDDGKPLTLPVQTSY-KPFKNRRNWNEWLTLPIKYSDL-PRNSQLAITIWDVSGTGKAVPFGGTTLSLF  105 (159)
T ss_pred             CCCCEEEEEEEEECCEeccCcEEccc-cCCCCCcccceeEEcccchhcC-ChhheEEEEEEEecCCCCceEEEEEEEeeE
Confidence            347888888765432      45554 2234678899999998765432 235789999999844335668999998875


Q ss_pred             e
Q 019724           97 E   97 (336)
Q Consensus        97 ~   97 (336)
                      +
T Consensus       106 d  106 (159)
T cd08397         106 N  106 (159)
T ss_pred             C
Confidence            4

PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. These are the only domains identified in the class III PI3Ks present in this cd. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Ty

>KOG1327 consensus Copine [Signal transduction mechanisms]

Probab=96.26  E-value=0.01  Score=59.49  Aligned_cols=58  Identities=10%  Similarity=0.147  Sum_probs=46.1

Q ss_pred             eEEEEeeCCCCCCeeeeEEEEEecchhhhcCCcEEEEEEeecCCCC----CCcccEEEEEeceeeec
Q 019724           38 QTTSVARDCGVRPTWNHQMRFNIDEAAAMQNNLTIVYSIRSTGGCF----GNSDLGEVFVPVKEMLL  100 (336)
Q Consensus        38 ~kTkv~~~~t~nP~WnE~f~F~v~~~~~~~~~~~L~v~V~d~d~~~----~d~~LG~~~v~L~~l~~  100 (336)
                      .||.+++. .+||.|.++|.+....+.    ...|+++++|.++..    .++|+|++.+.|..++.
T Consensus        43 ~rte~i~~-~~~p~f~~~~~l~y~fE~----vQ~l~~~~~~~~~~~~~l~~~dflg~~~c~l~~ivs  104 (529)
T KOG1327|consen   43 GRTEVIRN-VLNPFFTKKFLLQYRFEK----VQLLRFEVYDIDSRTPDLSSADFLGTAECTLSQIVS  104 (529)
T ss_pred             cceeeeec-cCCccceeeechhheeee----eeeEEEEEeecCCccCCcchhcccceeeeehhhhhh
Confidence            58888665 599999999887765543    478999999976542    57899999999998876

>PF00792 PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: IPR002420 Phosphatidylinositol 3-kinase (PI3-kinase) (2

Probab=96.14  E-value=0.064  Score=44.91  Aligned_cols=59  Identities=19%  Similarity=0.278  Sum_probs=38.5

Q ss_pred             EEEEeeCCCCCCeeeeEEEEEecchhhhcCCcEEEEEEeecCCCCCC----cccEEEEEeceee
Q 019724           39 TTSVARDCGVRPTWNHQMRFNIDEAAAMQNNLTIVYSIRSTGGCFGN----SDLGEVFVPVKEM   98 (336)
Q Consensus        39 kTkv~~~~t~nP~WnE~f~F~v~~~~~~~~~~~L~v~V~d~d~~~~d----~~LG~~~v~L~~l   98 (336)
                      +|+.+..+..++.|||.+.|+|.-..+ .....|+|.||+.+....+    ..||.+.++|=+.
T Consensus        23 ~T~~~~~~~~~~~W~e~l~F~i~i~~L-Pr~a~L~~~l~~~~~~~~~~~~~~~lgw~n~~lFd~   85 (142)
T PF00792_consen   23 STSYVPFSFSRPKWDEWLTFPIPISDL-PREARLCFTLYGVDSKKKSKKKKVPLGWVNLPLFDY   85 (142)
T ss_dssp             E-S-EESS-SSEEEEEEEEEEEEGGGS--TTEEEEEEEEEEECSTTT--EEEEEEEEEEESB-T
T ss_pred             eccccccccccceEeeEEEeecChHHC-ChhHeEEEEEEEecCCCccccceeEEEEEEEEeECC
Confidence            555433222689999999998754332 3457899999997444444    6899999987653

7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The usually N-terminal C2 domain interacts mainly with the scaffolding helical domain of the enzyme, and exhibits only minor interactions with the catalytic domain []. The domain consists of two four-stranded antiparallel beta-sheets that form a beta-sandwich. Isolated C2 domain binds multilamellar phospholipid vesicles which suggests that this domain could play a role in membrane association. Membrane attachment by C2 domains is typically mediated by the loops connecting beta-strand regions that in other C2 domain-containing proteins are calcium-binding region; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0046854 phosphatidylinositol phosphorylation, 0048015 phosphatidylinositol-mediated signaling, 0005942 phosphatidylinositol 3-kinase complex; PDB: 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 3L54_A 1E8Z_A 2CHX_A 3ML8_A 3OAW_A ....

>cd08695 C2_Dock-B C2 domains found in Dedicator Of CytoKinesis (Dock) class B proteins

Probab=96.10  E-value=0.069  Score=47.05  Aligned_cols=57  Identities=19%  Similarity=0.300  Sum_probs=40.9

Q ss_pred             eEEEEeeCCCCCCeeeeEEEEEecchhhhcCCcEEEEEEeecCCCC-C-CcccEEEEEecee
Q 019724           38 QTTSVARDCGVRPTWNHQMRFNIDEAAAMQNNLTIVYSIRSTGGCF-G-NSDLGEVFVPVKE   97 (336)
Q Consensus        38 ~kTkv~~~~t~nP~WnE~f~F~v~~~~~~~~~~~L~v~V~d~d~~~-~-d~~LG~~~v~L~~   97 (336)
                      ++|-|.. .+.+|.|+|++++.|.....  ....|.|++++..... . .+.+|.+.++|-+
T Consensus        55 ~~S~V~y-H~~~P~W~EtiKi~lP~~~~--~~~HL~FtfrH~S~~~k~~~~pfg~s~lpL~~  113 (189)
T cd08695          55 YRSFVLY-HNNSPRWNETIKLPIPIDKF--RGSHLRFEFRHCSTKDKGEKKLFGFSFVPLMR  113 (189)
T ss_pred             EEEEEEE-cCCCCCCceeEEEecChhhC--CCeeEEEEEEEeeeccCCCCCceEEEEEeecc
Confidence            7888754 46899999999999977642  4567888887752211 1 2679999999843

Dock-B is one of 4 classes of Dock family proteins. The members here include: Dock3/MOCA (modifier of cell adhesion) and Dock4. Most of these members have been shown to be GEFs specific for Rac, although Dock4 has also been shown to interact indirectly with the Ras family GTPase Rap1, probably through Rap regulatory proteins. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-B members contain a SH3 domain upstream of the C2 domain and a proline-rich region downstream. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold int

>PF14429 DOCK-C2: C2 domain in Dock180 and Zizimin proteins; PDB: 3L4C_A

Probab=96.05  E-value=0.091  Score=46.02  Aligned_cols=57  Identities=12%  Similarity=0.247  Sum_probs=34.7

Q ss_pred             eEEEEeeCCCCCCeeeeEEEEEecchhhhcCCcEEEEEEeecCCCC-C--CcccEEEEEecee
Q 019724           38 QTTSVARDCGVRPTWNHQMRFNIDEAAAMQNNLTIVYSIRSTGGCF-G--NSDLGEVFVPVKE   97 (336)
Q Consensus        38 ~kTkv~~~~t~nP~WnE~f~F~v~~~~~~~~~~~L~v~V~d~d~~~-~--d~~LG~~~v~L~~   97 (336)
                      ++|.|. ..+.+|.|+|+|++.|....  .++..|.|++++..... +  +..+|.+.++|.+
T Consensus        61 ~~S~v~-yh~k~P~f~deiKi~LP~~l--~~~~HLlFtf~h~s~~~~~~~~~~~g~a~lpL~~  120 (184)
T PF14429_consen   61 YYSSVY-YHNKNPQFNDEIKIQLPPDL--FPKHHLLFTFYHVSCKESKEKSKPFGYAFLPLMD  120 (184)
T ss_dssp             EE-----TT-SS-EEEEEEEEEE-CCC--CTTEEEEEEEEE---SSSS-SS-EEEEEEEESB-
T ss_pred             EEEEEE-ecCCCCCccEEEEEEcCchh--cccEEEEEEEEeeccccccCccceeEEEEEEeee
Confidence            556663 44689999999999997653  34578999999863322 2  2689999999987

>cd08694 C2_Dock-A C2 domains found in Dedicator Of CytoKinesis (Dock) class A proteins

Probab=96.04  E-value=0.084  Score=46.69  Aligned_cols=56  Identities=9%  Similarity=0.160  Sum_probs=40.5

Q ss_pred             eEEEEeeCCCCCCeeeeEEEEEecchhhhcCCcEEEEEEeecCCCC-C---CcccEEEEEece
Q 019724           38 QTTSVARDCGVRPTWNHQMRFNIDEAAAMQNNLTIVYSIRSTGGCF-G---NSDLGEVFVPVK   96 (336)
Q Consensus        38 ~kTkv~~~~t~nP~WnE~f~F~v~~~~~~~~~~~L~v~V~d~d~~~-~---d~~LG~~~v~L~   96 (336)
                      ++|-|.. ...+|.|+|++++.|.....  ....|.|++++..... +   +..+|.+.++|-
T Consensus        55 ~~S~V~Y-h~~~P~W~EtIKl~lP~~~~--~~~HL~FtfrH~S~~~~kd~~e~pfg~s~lpL~  114 (196)
T cd08694          55 YKSVIYY-QVDKPKWFETFKVAIPIEDF--KSSHLRFTFKHRSSNEAKDKSEKPFALSFVKLM  114 (196)
T ss_pred             EEEEEEe-ecCCCCCceeEEEecChhhC--CCeEEEEEEEeeccccccCCCCCceEEEEEeee
Confidence            7777743 35899999999999976642  4577889988752111 2   356999999985

Dock-A is one of 4 classes of Dock family proteins. The members here include: Dock180/Dock1, Dock2, and Dock5. Most of these members have been shown to be GEFs specific for Rac. Dock5 has not been well characterized to date, but most likely also is a GEF specific for Rac. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-A members contain a proline-rich region and a SH3 domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>PF15625 CC2D2AN-C2: CC2D2A N-terminal C2 domain

Probab=95.50  E-value=0.17  Score=43.70  Aligned_cols=72  Identities=21%  Similarity=0.218  Sum_probs=52.8

Q ss_pred             CCcceEEEEEEcCcc-eEEEEee-CCCCCCeeeeEEEEEecchhhhcCCcEEEEEEeecCCCCCCcccEEEEEeceeeec
Q 019724           23 SKMNVYAVVTIFGES-QTTSVAR-DCGVRPTWNHQMRFNIDEAAAMQNNLTIVYSIRSTGGCFGNSDLGEVFVPVKEMLL  100 (336)
Q Consensus        23 g~~dPYv~v~l~~~~-~kTkv~~-~~t~nP~WnE~f~F~v~~~~~~~~~~~L~v~V~d~d~~~~d~~LG~~~v~L~~l~~  100 (336)
                      .+..-|++|.+.++. .+|+... .....-.+||.|.+.|....     ..|.|+||.. ....+.+|+++.|+|-....
T Consensus        35 ~~~~~~ikl~~N~k~V~~T~~~~l~~dF~v~f~~~f~v~i~~~P-----esi~l~i~E~-~~~~~~~la~v~vpvP~~~~  108 (168)
T PF15625_consen   35 QKTRYYIKLFFNDKEVSRTRSRPLWSDFRVHFNEIFNVQITRWP-----ESIKLEIYEK-SGLSDRLLAEVFVPVPGSTV  108 (168)
T ss_pred             hheeEEEEEEECCEEEEeeeeEecCCCeEEeccCEEEEEEecCC-----CEEEEEEEEc-cCccceEEEEEEeeCCCCcc
Confidence            346789999999876 5565522 12334556888988886643     7899999998 44788999999999876544

>smart00142 PI3K_C2 Phosphoinositide 3-kinase, region postulated to contain C2 domain

Probab=94.96  E-value=0.13  Score=40.53  Aligned_cols=72  Identities=15%  Similarity=0.204  Sum_probs=45.2

Q ss_pred             EEEEEEEecCCCCCCCCCCcceEEEEEEcCcc------eEEEEeeCCCCCCeeeeEEEEEecchhhhcCCcEEEEEEeec
Q 019724            6 LDITVVSASDLKTAGMFSKMNVYAVVTIFGES------QTTSVARDCGVRPTWNHQMRFNIDEAAAMQNNLTIVYSIRST   79 (336)
Q Consensus         6 L~V~vi~Ak~L~~~d~~g~~dPYv~v~l~~~~------~kTkv~~~~t~nP~WnE~f~F~v~~~~~~~~~~~L~v~V~d~   79 (336)
                      +.+++...+++.........+.||++.|-...      ..|+. +.-..+..|||-+.|++.-..+ .....|.|.||+.
T Consensus        13 ~~~~~~~~~~~~l~~~~~~~~l~v~~~l~~g~~~l~~pv~t~~-~~~~~~~~Wnewl~f~i~i~~L-Pr~a~L~~~i~~~   90 (100)
T smart00142       13 LVITIALIHGIPLNWSRDYSDLYVEIQLYHGGKLLCLPVSTSY-KPFFPSVKWNEWLTFPIQISDL-PREARLCITIYEV   90 (100)
T ss_pred             eEEEEEEeeCCCcccccCcceEEEEEEEEECCEEccCcEEecc-cCCCCCcccceeEEccCchhcC-ChhhEEEEEEEEe
Confidence            55666666666543322224788888765422      35554 3334568999999998654322 2357899999986

Outlier of C2 family.

>cd08679 C2_DOCK180_related C2 domains found in Dedicator Of CytoKinesis 1 (DOCK 180) and related proteins

Probab=94.90  E-value=0.37  Score=41.96  Aligned_cols=56  Identities=13%  Similarity=0.304  Sum_probs=40.0

Q ss_pred             eEEEEeeCCCCCCeeeeEEEEEecchhhhcCCcEEEEEEeecCCC-----CCCcccEEEEEecee
Q 019724           38 QTTSVARDCGVRPTWNHQMRFNIDEAAAMQNNLTIVYSIRSTGGC-----FGNSDLGEVFVPVKE   97 (336)
Q Consensus        38 ~kTkv~~~~t~nP~WnE~f~F~v~~~~~~~~~~~L~v~V~d~d~~-----~~d~~LG~~~v~L~~   97 (336)
                      ++|-+ ..+ .+|.|+|+|++.|....  .....|.|++++.+..     .....+|.+.++|.+
T Consensus        55 ~~sv~-~~~-k~p~f~deiKi~LP~~l--~~~~HLlFtf~hv~~~~~~~~~~~~~~g~a~lpL~~  115 (178)
T cd08679          55 YTSVV-YYH-KNPVFNDEIKIQLPADL--TPQHHLLFTFYHVSSKKKQGDKEETPFGYAFLPLMD  115 (178)
T ss_pred             EEEEE-EcC-CCCCCceeEEEecCCcc--CCCeEEEEEEEccccccccCCCccceEEEEEEeccc
Confidence            44444 444 79999999999995542  2457899999986322     235679999999876

Dock180 was first identified as an 180kd proto-oncogene product c-Crk-interacting protein involved in actin cytoskeletal changes. It is now known that it has Rac-specific GEF activity, but lacks the conventional Dbl homology (DH) domain. There are 10 additional related proteins that can be divided into four classes based on sequence similarity and domain organization: Dock-A which includes Dock180/Dock1, Dock2, and Dock5; Dock-B which includes Dock3/MOCA (modifier of cell adhesion) and Dock4; Dock-C which includes Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3; and Dock-D, which includes Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Most of members of classes Dock-A and Dock-B are the GEFs specific for Rac. Those of Dock-D are Cdc42-specific GEFs while those of Dock-C are the GEFs for both. All Dock180-related proteins have two common homolo

>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]

Probab=94.46  E-value=0.24  Score=51.74  Aligned_cols=16  Identities=31%  Similarity=0.789  Sum_probs=9.1

Q ss_pred             CCCCCeeeeEEEEEec
Q 019724           46 CGVRPTWNHQMRFNID   61 (336)
Q Consensus        46 ~t~nP~WnE~f~F~v~   61 (336)
                      ++.+|.|+..|+|+|+
T Consensus       440 ~~~DPdf~yr~~l~id  455 (1102)
T KOG1924|consen  440 TGMDPDFKYRFRLDID  455 (1102)
T ss_pred             CCCCCCcchhhcccCc
Confidence            3456666665555553

>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]

Probab=93.39  E-value=0.41  Score=50.09  Aligned_cols=9  Identities=11%  Similarity=0.187  Sum_probs=4.0

Q ss_pred             EEeceeeec
Q 019724           92 FVPVKEMLL  100 (336)
Q Consensus        92 ~v~L~~l~~  100 (336)
                      .|++..|++
T Consensus       453 ~id~~~liD  461 (1102)
T KOG1924|consen  453 DIDLTELID  461 (1102)
T ss_pred             cCcHHHHHH
Confidence            344444443

>PTZ00447 apical membrane antigen 1-like protein; Provisional

Probab=93.01  E-value=1  Score=43.00  Aligned_cols=97  Identities=11%  Similarity=0.129  Sum_probs=64.3

Q ss_pred             CcceEEEEEEcCcceEEEEeeCCCCCC-eeeeEEEEEecchhhhcCCcEEEEEEeecCCCCCCcccEEEEEecee-eecc
Q 019724           24 KMNVYAVVTIFGESQTTSVARDCGVRP-TWNHQMRFNIDEAAAMQNNLTIVYSIRSTGGCFGNSDLGEVFVPVKE-MLLR  101 (336)
Q Consensus        24 ~~dPYv~v~l~~~~~kTkv~~~~t~nP-~WnE~f~F~v~~~~~~~~~~~L~v~V~d~d~~~~d~~LG~~~v~L~~-l~~~  101 (336)
                      ...-|++++.+....+|..+..+-.+- .-.+...+.+..-     +.+|+|.||.. ...+...||.+.|.+++ ++.+
T Consensus        73 ~khiyIef~~Gr~d~TT~~IpTsKK~RI~IqqRV~IkIRQc-----DnTLkI~lfKK-kLvkk~hIgdI~InIn~dIIdk  146 (508)
T PTZ00447         73 YKHIYIIFSTDKYDFTTDEIPTNKKNRIHIDQRVDIKIRQC-----DETLRVDLFTT-KLTKKVHIGQIKIDINASVISK  146 (508)
T ss_pred             ceeEEEEEEcCceEEEccccccCcCceEEEeeeeeeeeeec-----CceEEEEEEec-cccceeEEEEEEecccHHHHhc
Confidence            457899999888887775543321222 2234444444332     47899999998 66788889999999875 4542


Q ss_pred             CCCCCCCCeeeeeeCCCCCcceEEEEEEE
Q 019724          102 SNGDDDKPMSYNITTPGGRAKGVLNVSYK  130 (336)
Q Consensus       102 ~~~~~~~~~~~~l~~~~g~~~G~L~lsl~  130 (336)
                      .   -.+..||.+. +++...+.|.||+.
T Consensus       147 ~---FPKnkWy~c~-kDGq~~cRIqLSFh  171 (508)
T PTZ00447        147 S---FPKNEWFVCF-KDGQEICKVQMSFY  171 (508)
T ss_pred             c---CCccceEEEe-cCCceeeeEEEEeh
Confidence            2   2255678875 56777888887765

>PF06219 DUF1005: Protein of unknown function (DUF1005); InterPro: IPR010410 This is a family of plant proteins with undetermined function

Probab=92.60  E-value=1.1  Score=43.86  Aligned_cols=108  Identities=14%  Similarity=0.147  Sum_probs=59.6

Q ss_pred             CcceEEEEEEcCcceEEEEee---CCCCC-Ce-eeeEEEEEecchhhhc---------CCcEEEEEEeecCCC-------
Q 019724           24 KMNVYAVVTIFGESQTTSVAR---DCGVR-PT-WNHQMRFNIDEAAAMQ---------NNLTIVYSIRSTGGC-------   82 (336)
Q Consensus        24 ~~dPYv~v~l~~~~~kTkv~~---~~t~n-P~-WnE~f~F~v~~~~~~~---------~~~~L~v~V~d~d~~-------   82 (336)
                      ...+||+|+|.+-..+|..+-   ..+.+ |. -+-.-.|.+++..++.         ....|+|.||.- +.       
T Consensus        35 sspCfC~IrL~~fP~Qta~vPLi~~~~~~~p~~~~~Aa~F~Ld~s~l~~l~~~~~f~~~~~~L~i~VY~G-r~G~tCGv~  113 (460)
T PF06219_consen   35 SSPCFCEIRLKGFPSQTAPVPLISSSEPEPPDSHSLAASFHLDKSDLRRLLAKPCFYSPRPCLEISVYTG-RRGSTCGVG  113 (460)
T ss_pred             CCCeEEEEecCCCCccceeeeeccCCCCCCCCcCCcceEEecCHHHHHHHhCCCccccCCceEEEEEEEC-CCCCccccc
Confidence            457899999998664444321   11111 11 1223456665543321         125799999984 32       


Q ss_pred             CCCcccEEEEEeceeeeccCCCCCC--CCeeeeeeCCC----CCcceEEEEEEEEccc
Q 019724           83 FGNSDLGEVFVPVKEMLLRSNGDDD--KPMSYNITTPG----GRAKGVLNVSYKFGPS  134 (336)
Q Consensus        83 ~~d~~LG~~~v~L~~l~~~~~~~~~--~~~~~~l~~~~----g~~~G~L~lsl~~~~~  134 (336)
                      .+.++||+++|+|.--..  ++...  ..-|+.+-+.+    ....-+|||.++.+++
T Consensus       114 ~~~klLG~v~vpldl~~a--e~kp~v~hnGWi~iGk~~~~~~~~~~aeLHl~Vr~EpD  169 (460)
T PF06219_consen  114 NSGKLLGKVRVPLDLKWA--EGKPVVFHNGWISIGKNKQGSGKSPSAELHLVVRAEPD  169 (460)
T ss_pred             ccceEEEEEEEEeccccc--cCCeeEEEccceecCCCCCCCCCCCcceEEEEEeccCC
Confidence            246899999999873221  22111  22344544321    1235789999887653

>cd08697 C2_Dock-D C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins

Probab=91.71  E-value=2.3  Score=37.39  Aligned_cols=57  Identities=7%  Similarity=0.250  Sum_probs=40.7

Q ss_pred             eEEEEeeCCCCCCeeeeEEEEEecchhhhcCCcEEEEEEeecCCC------C---CCcccEEEEEecee
Q 019724           38 QTTSVARDCGVRPTWNHQMRFNIDEAAAMQNNLTIVYSIRSTGGC------F---GNSDLGEVFVPVKE   97 (336)
Q Consensus        38 ~kTkv~~~~t~nP~WnE~f~F~v~~~~~~~~~~~L~v~V~d~d~~------~---~d~~LG~~~v~L~~   97 (336)
                      .+|.|... +.+|.|+|++.+.|....  .....|.|++++.+..      .   .+..+|-+.++|-+
T Consensus        58 ~~s~V~yh-~k~P~f~dEiKI~LP~~l--~~~hHLlFtFyHvsc~~~~k~~~~~~~e~~~Gys~lPLl~  123 (185)
T cd08697          58 AYAAVLHH-NQNPEFYDEIKIELPTQL--HEKHHLLFTFYHVSCDINKKGKKKDGVETPVGYAWLPLLK  123 (185)
T ss_pred             EEEEEEEc-CCCCccceeEEEecCCcC--CCCeeEEEEEEeeccccccccccCCCccceEEEEEEeeec
Confidence            66777555 589999999999987653  2356788888886311      1   13569999999865

Dock-D is one of 4 classes of Dock family proteins. The members here include: Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Dock-D are Cdc42-specific GEFs. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-D members contain a functionally uncharacterized domain and a PH domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The PH domain broadly binds to phospholipids and is thought to be involved in targeting the plasma membrane. The C2 domain was first identified in PKC. C2 domains fold into an 8-stande

>PF14909 SPATA6: Spermatogenesis-assoc protein 6

Probab=91.05  E-value=2.6  Score=35.28  Aligned_cols=91  Identities=18%  Similarity=0.185  Sum_probs=62.0

Q ss_pred             EEEEEEEEecCCCCCCCCCCcceEEEEEEcCcceEEEEeeCCCCCCeeeeEEEEEecch-hh-------hcCCcEEEEEE
Q 019724            5 ALDITVVSASDLKTAGMFSKMNVYAVVTIFGESQTTSVARDCGVRPTWNHQMRFNIDEA-AA-------MQNNLTIVYSI   76 (336)
Q Consensus         5 ~L~V~vi~Ak~L~~~d~~g~~dPYv~v~l~~~~~kTkv~~~~t~nP~WnE~f~F~v~~~-~~-------~~~~~~L~v~V   76 (336)
                      .|+|+.+.|-+.-   +..+-|.|+.|++.+.-+||+... ...-=.++|+|+|+-... ..       ..+...+.||+
T Consensus         3 eL~i~aVTCPGv~---L~~~~~vyL~v~~lg~~~~T~~~p-pvFPllfhek~~FeK~F~~~~dp~~l~~~Le~e~~~iEL   78 (140)
T PF14909_consen    3 ELEIHAVTCPGVW---LCDKGDVYLSVCILGQYKRTRCLP-PVFPLLFHEKFRFEKVFPNAVDPAQLADLLEDETVYIEL   78 (140)
T ss_pred             EEEEEEEecCCeE---eCCCCCEEEEEEEcccEeecccCC-CcCCeeEeeEEEeEEEecCCCCHHHHHHHhhcCcEEEEE
Confidence            4666667765543   334679999999999999998732 223335699999974221 11       12467788999


Q ss_pred             eecCCCCCCcccEEEEEeceeeec
Q 019724           77 RSTGGCFGNSDLGEVFVPVKEMLL  100 (336)
Q Consensus        77 ~d~d~~~~d~~LG~~~v~L~~l~~  100 (336)
                      +..... ..+.|+..+-.++|++-
T Consensus        79 iQl~~~-~g~iLA~ye~n~rDfLf  101 (140)
T PF14909_consen   79 IQLVPP-AGEILAYYEENTRDFLF  101 (140)
T ss_pred             EEEeCC-CCcEEEEEeccccceEc
Confidence            887333 36789998888888875

>cd08696 C2_Dock-C C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins

Probab=90.84  E-value=3.2  Score=36.28  Aligned_cols=57  Identities=11%  Similarity=0.273  Sum_probs=39.8

Q ss_pred             eEEEEeeCCCCCCeeeeEEEEEecchhhhcCCcEEEEEEeecCCCC------CCcccEEEEEecee
Q 019724           38 QTTSVARDCGVRPTWNHQMRFNIDEAAAMQNNLTIVYSIRSTGGCF------GNSDLGEVFVPVKE   97 (336)
Q Consensus        38 ~kTkv~~~~t~nP~WnE~f~F~v~~~~~~~~~~~L~v~V~d~d~~~------~d~~LG~~~v~L~~   97 (336)
                      .+|.|... +.+|.|+|++.+.|....  .....|.|++++.+-..      ....+|-+.++|-+
T Consensus        56 ~~S~V~yH-nk~P~f~DEiKi~LP~~l--~~~hHLlFtF~Hvs~~~k~~~~~~e~~~Gys~lPL~~  118 (179)
T cd08696          56 AYTAVTYH-NKSPDFYDEIKIKLPADL--TDNHHLLFTFYHISCQKKQEGGSVETPIGYTWLPLLR  118 (179)
T ss_pred             EEEEEEEe-CCCCcccceEEEEcCCCC--CCCeEEEEEEEEeeccccccCCCccceEEEEEEeeec
Confidence            66776544 589999999999987653  23567888888752211      13569999888864

Dock-C is one of 4 classes of Dock family proteins. The members here include: Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3. Dock-C members are GEFs for both Rac and Cdc42. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-C members contain a functionally uncharacterized domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strand

>PF09849 DUF2076: Uncharacterized protein conserved in bacteria (DUF2076); InterPro: IPR018648 This family of hypothetical prokaryotic proteins has no known function but includes putative perimplasmic ligand-binding sensor proteins

Probab=90.78  E-value=0.95  Score=41.62  Aligned_cols=24  Identities=21%  Similarity=0.256  Sum_probs=18.7

Q ss_pred             CCCchhhHHHHHHHHHHHHHHHHh
Q 019724          287 AGLGLGMGAGLLGGLAGGLTLAAA  310 (336)
Q Consensus       287 ~~~~~~~~~g~~~g~~~g~~~~~~  310 (336)
                      .+.++..++||+||+|++.+|.++
T Consensus       138 Lg~A~~TAAGVAGG~lL~n~i~~l  161 (247)
T PF09849_consen  138 LGGAAQTAAGVAGGMLLANGIESL  161 (247)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            445566888999999988888876

>PF14186 Aida_C2: Cytoskeletal adhesion; PDB: 2QZQ_A 2QZ5_A

Probab=88.63  E-value=1.1  Score=37.79  Aligned_cols=91  Identities=15%  Similarity=0.161  Sum_probs=46.4

Q ss_pred             EEEEEEEEecCCCCCCCCCCcceEEEEEEcCcc-------eEEEEeeCC-CCCCeeeeEEEEEecchhhhcCCcEEEEEE
Q 019724            5 ALDITVVSASDLKTAGMFSKMNVYAVVTIFGES-------QTTSVARDC-GVRPTWNHQMRFNIDEAAAMQNNLTIVYSI   76 (336)
Q Consensus         5 ~L~V~vi~Ak~L~~~d~~g~~dPYv~v~l~~~~-------~kTkv~~~~-t~nP~WnE~f~F~v~~~~~~~~~~~L~v~V   76 (336)
                      .|+|+|.+.. |++..  .-.|||+.|++.+..       +.|.+.... +..=.||.+..+...-+.+ .+...|.||+
T Consensus        14 ~l~v~Iekig-lkda~--~~~~P~~tVSV~D~~G~~ve~~QdTpv~~~~~~~yv~f~~~v~lqtple~l-p~Gaai~fE~   89 (147)
T PF14186_consen   14 YLSVFIEKIG-LKDAS--QYIDPYFTVSVKDGNGKDVEPPQDTPVGSRREDNYVHFNNTVHLQTPLEKL-PKGAAIFFEF   89 (147)
T ss_dssp             EEEEEEEEEE--TTGG--G-EEEEEEEEEE-TTS-BSS--EE--S-SEEETTEEEEEEEEE-SS-GGGS--TT-EEEEEE
T ss_pred             eEEEEEEEEE-ECChH--HccCCeEEEEEECCCCCCccccccCCCcccccCCEEEEcccEEEcCCHHHC-CCceEEEEEE
Confidence            4666666654 65432  347999999987643       666654221 2234455544443332222 2456789999


Q ss_pred             eecCCCCC--CcccEEEEEeceeeec
Q 019724           77 RSTGGCFG--NSDLGEVFVPVKEMLL  100 (336)
Q Consensus        77 ~d~d~~~~--d~~LG~~~v~L~~l~~  100 (336)
                      +++ +..+  -...+.+.+.+++|..
T Consensus        90 kH~-K~kk~k~S~kcw~fme~dei~~  114 (147)
T PF14186_consen   90 KHY-KPKKKKTSTKCWAFMELDEIKP  114 (147)
T ss_dssp             EEE-ETTTTCEEEEEEEEEEGGG--S
T ss_pred             Eee-eccceeeeeeEEEEEEhhhccC
Confidence            987 3332  2336777777777665

>KOG1329 consensus Phospholipase D1 [Lipid transport and metabolism]

Probab=85.39  E-value=1.7  Score=46.40  Aligned_cols=101  Identities=13%  Similarity=0.226  Sum_probs=63.4

Q ss_pred             cceEEEEEEcCcc-eEEEEeeCCCCCCeeeeEEEEEecchhhhcCCcEEEEEEeecCCCCC-CcccEEEEEeceeeeccC
Q 019724           25 MNVYAVVTIFGES-QTTSVARDCGVRPTWNHQMRFNIDEAAAMQNNLTIVYSIRSTGGCFG-NSDLGEVFVPVKEMLLRS  102 (336)
Q Consensus        25 ~dPYv~v~l~~~~-~kTkv~~~~t~nP~WnE~f~F~v~~~~~~~~~~~L~v~V~d~d~~~~-d~~LG~~~v~L~~l~~~~  102 (336)
                      ++.|+.+.|.... .+|....+.=.++.|+++|...+....     ..+++.|.+. +..+ ..++|.+++++..++. +
T Consensus       138 ~e~Ylt~~l~~~~~~~t~~~~~f~e~s~~~f~~~~~~~h~~-----g~v~~~~~~~-~~~G~s~~w~~v~~s~~~~~~-~  210 (887)
T KOG1329|consen  138 LENYLTVVLHKARYRRTHVIYEFLENSRWSFSFDIGFAHKA-----GYVIFRVKGA-RVPGWSKRWGRVKISFLQYCS-G  210 (887)
T ss_pred             ccchheeeechhhhhchhhhhcccccchhhhhccccccccc-----cEEEEeecCC-ccccceeEEEEeccchhhhhc-c
Confidence            4788888887655 556554432268999988876665443     6788888877 5555 8899999999998887 2


Q ss_pred             CCCCCCCeeeeeeCCCCCc---ceEEEEEEEEcccC
Q 019724          103 NGDDDKPMSYNITTPGGRA---KGVLNVSYKFGPSS  135 (336)
Q Consensus       103 ~~~~~~~~~~~l~~~~g~~---~G~L~lsl~~~~~~  135 (336)
                      ..   ...++.+...+++.   .-.+++++.|+...
T Consensus       211 ~~---~~~~~~Il~~d~~~~~~~~~~~~~~~~~~~~  243 (887)
T KOG1329|consen  211 HR---IGGWFPILDNDGKPHQKGSNESLRLGFTPME  243 (887)
T ss_pred             cc---ccceeeeeccCCccccCCcccceEEeeEeec
Confidence            22   12344544433222   22355556655543

>PF12416 DUF3668: Cep120 protein; InterPro: IPR022136 This domain family is found in eukaryotes, and is typically between 75 and 114 amino acids in length

Probab=84.86  E-value=13  Score=35.98  Aligned_cols=90  Identities=18%  Similarity=0.251  Sum_probs=59.5

Q ss_pred             EEEEEEEEecCCCCCC---CC---CCcceEEEEEEcCcceEEEEeeCCCCCCee--eeEEEEEecchhhh-----cCCcE
Q 019724            5 ALDITVVSASDLKTAG---MF---SKMNVYAVVTIFGESQTTSVARDCGVRPTW--NHQMRFNIDEAAAM-----QNNLT   71 (336)
Q Consensus         5 ~L~V~vi~Ak~L~~~d---~~---g~~dPYv~v~l~~~~~kTkv~~~~t~nP~W--nE~f~F~v~~~~~~-----~~~~~   71 (336)
                      +|.|+|..|++|...-   ..   +....|...+|.+....|.. .+...+|.+  ++...|.|......     .....
T Consensus       193 vLsvti~~a~nL~~Lip~~l~~~~~~~~f~f~YsllGn~Vt~~~-F~~l~~~~f~~er~s~vRirSS~~~L~~yf~~~~~  271 (340)
T PF12416_consen  193 VLSVTIKFAENLEQLIPSSLPEEQNHSGFFFYYSLLGNDVTTEP-FKSLSSPSFPPERASGVRIRSSLRVLRRYFQQIPK  271 (340)
T ss_pred             EEEEehhhhhhHHhhccccccccCCCccEEEEEEecCcEeEeee-ccccCCCCcCeeeeeEEeecccHHHHHHHHhhCCC
Confidence            5778888999886541   11   23567888888888777776 344577766  33333665432110     12346


Q ss_pred             EEEEEeecCCCCCCcccEEEEEeceeeec
Q 019724           72 IVYSIRSTGGCFGNSDLGEVFVPVKEMLL  100 (336)
Q Consensus        72 L~v~V~d~d~~~~d~~LG~~~v~L~~l~~  100 (336)
                      |.|.++..     +..||.+.|+|..++.
T Consensus       272 L~I~Lc~g-----~~~Lg~~~v~l~~Ll~  295 (340)
T PF12416_consen  272 LQIHLCCG-----NQSLGSTSVPLQPLLP  295 (340)
T ss_pred             eEEEEeeC-----CcEEEEEEEEhhhccC
Confidence            77777764     6789999999999986

>smart00157 PRP Major prion protein

Probab=84.37  E-value=3.5  Score=36.04  Aligned_cols=30  Identities=30%  Similarity=0.292  Sum_probs=21.0

Q ss_pred             cccCCCCCCchhhHHHHHHHHHHHHHHHHh
Q 019724          281 KKKGMAAGLGLGMGAGLLGGLAGGLTLAAA  310 (336)
Q Consensus       281 ~~~~~~~~~~~~~~~g~~~g~~~g~~~~~~  310 (336)
                      |++.....+.+++++|+++|+|+|.+|+.|
T Consensus        81 KP~~~~k~~~~aAgagAv~g~~~GY~lG~~  110 (217)
T smart00157       81 KPKTNMKHVAGAAAAGAVVGGLGGYMLGSA  110 (217)
T ss_pred             CCCcchHHHHHhhhcchhhhhccccccccc
Confidence            444334456666778888888888888886

The prion protein is a major component of scrapie-associated fibrils in Creutzfeldt-Jakob disease, kuru, Gerstmann-Straussler syndrome and bovine spongiform encephalopathy.

>PF14924 DUF4497: Protein of unknown function (DUF4497)

Probab=82.71  E-value=3.5  Score=32.99  Aligned_cols=80  Identities=8%  Similarity=0.115  Sum_probs=48.9

Q ss_pred             EEEEEecchhhh--cCCcEEEEEEeecCC---CCCCcccEEEEEeceeeeccC-----C-----CCCCCCeeeeeeCCCC
Q 019724           55 QMRFNIDEAAAM--QNNLTIVYSIRSTGG---CFGNSDLGEVFVPVKEMLLRS-----N-----GDDDKPMSYNITTPGG  119 (336)
Q Consensus        55 ~f~F~v~~~~~~--~~~~~L~v~V~d~d~---~~~d~~LG~~~v~L~~l~~~~-----~-----~~~~~~~~~~l~~~~g  119 (336)
                      +..|.+....+.  .....|.+.+|+.-.   .....+||++.|+|.+++.+-     +     ........|.|.+..+
T Consensus        12 ScLF~~~~~~L~~~l~~~pl~i~~~~~~~~~~~~~~~liG~~~i~l~~~~~~i~~~~~~~~~~p~s~~~k~~f~L~~~~~   91 (112)
T PF14924_consen   12 SCLFALTPEDLQQSLSSFPLYIVVKKVPPGFPTPPPMLIGSCPISLAEAFNRILKDSAECNGQPSSKTIKGTFPLFDENG   91 (112)
T ss_pred             EEEEEcCHHHHHHHhhCCceEEEEEecCCCCCCCccceeeEEEecHHHHHHHHHHHHHhhccCCCchhhcceeEeecCCC
Confidence            445555444332  123456666655312   234568999999998876311     0     0111334688888777


Q ss_pred             CcceEEEEEEEEccc
Q 019724          120 RAKGVLNVSYKFGPS  134 (336)
Q Consensus       120 ~~~G~L~lsl~~~~~  134 (336)
                      ...|+|.|.+++.-.
T Consensus        92 ~~~G~I~l~iRLscl  106 (112)
T PF14924_consen   92 NPVGEISLYIRLSCL  106 (112)
T ss_pred             ceeeeEEEEEEEecC
Confidence            889999999998754

>KOG3543 consensus Ca2+-dependent activator protein [Signal transduction mechanisms]

Probab=82.37  E-value=7.2  Score=40.26  Aligned_cols=82  Identities=20%  Similarity=0.383  Sum_probs=58.4

Q ss_pred             EEEEEEEEecCCCCCCCCCCcceEEEEEEcCcceEEEEeeCCCCCCeeeeEEEEEecchhhhcCCcEEEEEEeecCCC--
Q 019724            5 ALDITVVSASDLKTAGMFSKMNVYAVVTIFGESQTTSVARDCGVRPTWNHQMRFNIDEAAAMQNNLTIVYSIRSTGGC--   82 (336)
Q Consensus         5 ~L~V~vi~Ak~L~~~d~~g~~dPYv~v~l~~~~~kTkv~~~~t~nP~WnE~f~F~v~~~~~~~~~~~L~v~V~d~d~~--   82 (336)
                      .|+|.|.+..+|+...-  ..=.||.+.+.+.+..|.-. . ...|.|...=.|......     ..++|.+|.+...  
T Consensus       342 smevvvmevqglksvap--nrivyctmevegeklqtdqa-e-askp~wgtqgdfstthpl-----pvvkvklftestgvl  412 (1218)
T KOG3543|consen  342 SMEVVVMEVQGLKSVAP--NRIVYCTMEVEGEKLQTDQA-E-ASKPKWGTQGDFSTTHPL-----PVVKVKLFTESTGVL  412 (1218)
T ss_pred             eeeEEEeeeccccccCC--CeeEEEEEEecccccccchh-h-hcCCCCCcCCCcccCCCC-----ceeEEEEEeecceeE
Confidence            46778888888876542  22379999999988777753 2 367999887777765543     6788999887322  


Q ss_pred             -CCCcccEEEEEec
Q 019724           83 -FGNSDLGEVFVPV   95 (336)
Q Consensus        83 -~~d~~LG~~~v~L   95 (336)
                       +.|+-||++.+--
T Consensus       413 aledkelgrvil~p  426 (1218)
T KOG3543|consen  413 ALEDKELGRVILQP  426 (1218)
T ss_pred             EeechhhCeEEEec
Confidence             2688899987654

>KOG0694 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=80.78  E-value=0.43  Score=49.33  Aligned_cols=97  Identities=7%  Similarity=-0.065  Sum_probs=55.9

Q ss_pred             CcceEEEEEEcCcce-EEEEeeCCCCCCeeeeEEEEEecchhhhcCCcEEEEEEeecCCCCCCcccEEEEEeceeeeccC
Q 019724           24 KMNVYAVVTIFGESQ-TTSVARDCGVRPTWNHQMRFNIDEAAAMQNNLTIVYSIRSTGGCFGNSDLGEVFVPVKEMLLRS  102 (336)
Q Consensus        24 ~~dPYv~v~l~~~~~-kTkv~~~~t~nP~WnE~f~F~v~~~~~~~~~~~L~v~V~d~d~~~~d~~LG~~~v~L~~l~~~~  102 (336)
                      ..++|+.|.+..... .+.+ +..+..|.|+|+|+++|...      ..+.|.|+.+.....+.+...+++-.+++.. .
T Consensus        27 al~~y~~v~vk~~~~~~~~~-~~~~~~~~~~~~F~~~v~~~------~~~~i~v~~~~~~~~~~~~a~~~~~~e~~k~-~   98 (694)
T KOG0694|consen   27 ALQPYLAVELKVKQGAENMT-KVELRIPELRETFHVEVVAG------GAKNIIVLLKSPDPKALSEAQLSLQEESQKL-L   98 (694)
T ss_pred             hhhhhheeccceeecccccC-CCCCCCchhhhheeeeeecC------CceEEEEEecCCcchhhHHHhHHHHHHHHHH-H
Confidence            468899888876552 3333 55689999999999998654      5788888887211122333333333333332 1


Q ss_pred             CCCCCCCeeeeeeCCCCCcceEEEEEEEEcccC
Q 019724          103 NGDDDKPMSYNITTPGGRAKGVLNVSYKFGPSS  135 (336)
Q Consensus       103 ~~~~~~~~~~~l~~~~g~~~G~L~lsl~~~~~~  135 (336)
                      +..  ...|..+     +..|+|.+.+.+....
T Consensus        99 ~~~--~~~w~~~-----~~~g~~~~~~~~~~~~  124 (694)
T KOG0694|consen   99 ALE--QRLWVLI-----EELGTLLKPAALTGTL  124 (694)
T ss_pred             hhh--hhhcccc-----ccccceeeeecccCcC
Confidence            111  1223332     3357777777766543

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	336
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	1e-12
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	3e-11
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	6e-11
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	7e-11
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	8e-11
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	4e-10
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	6e-10
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	4e-08
1wfj_A	136	Putative elicitor-responsive gene; C2 domain, rike	1e-12
2nq3_A	173	Itchy homolog E3 ubiquitin protein ligase; C2 doma	7e-10
2dmh_A	140	Myoferlin; beta-sandwich, FER-1-like protein 3, mu	1e-07
1twf_A	1733	B220, DNA-directed RNA polymerase II largest subun	2e-06
1twf_A	1733	B220, DNA-directed RNA polymerase II largest subun	9e-06
1twf_A	1733	B220, DNA-directed RNA polymerase II largest subun	1e-04
2z73_A	448	Rhodopsin; visual pigment, GQ-type, G-protein coup	2e-06
3v1v_A	433	2-MIB synthase, 2-methylisoborneol synthase; class	9e-06
3v1v_A	433	2-MIB synthase, 2-methylisoborneol synthase; class	6e-05
3v1v_A	433	2-MIB synthase, 2-methylisoborneol synthase; class	1e-04
3v1v_A	433	2-MIB synthase, 2-methylisoborneol synthase; class	1e-04
2r83_A	284	Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cel	1e-05
2r83_A	284	Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cel	3e-04
1dqv_A	296	Synaptotagmin III; beta sandwich, calcium ION, C2	4e-05
1dqv_A	296	Synaptotagmin III; beta sandwich, calcium ION, C2	5e-05
3kwu_A	148	MUNC13-1; calcium binding protein, phospholipid bi	4e-05
3pyc_A	132	E3 ubiquitin-protein ligase smurf1; phospholipid b	9e-05
3h0g_A	1752	DNA-directed RNA polymerase II subunit RPB1; trans	1e-04
3h0g_A	1752	DNA-directed RNA polymerase II subunit RPB1; trans	1e-04
3h0g_A	1752	DNA-directed RNA polymerase II subunit RPB1; trans	2e-04
2fk9_A	157	Protein kinase C, ETA type; ATP-binding, metal-bin	1e-04
1gmi_A	136	Protein kinase C, epsilon type; PKC, C2 domain, X-	1e-04

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 68.3 bits (166), Expect = 1e-12
 Identities = 19/114 (16%), Positives = 27/114 (23%)

Query: 158 MAYAPQPPPPMPQGYANPTAYPAPQKDVYPPPPDAHKAALAYPAPGYPPQPQAYPLPGGY 217
           M++  +   P  Q      A P  Q   + PP D   A ++Y   G PPQ     +    
Sbjct: 1   MSHHKKRVYPQAQLQYGQNATPLQQPAQFMPPQDPAAAGMSYGQMGMPPQGAVPSMGQQQ 60

Query: 218 PPPGYAAGAPAPPHPGGYAPVQGPGGMNYQPSPPGSAMGPAGYAYAAPPAAPQQ 271
                             +             P              P    QQ
Sbjct: 61  FLTPAQEQLHQQIDQATTSMNDMHLHNVPLVDPNAYMQPQVPVQMGTPLQQQQQ 114

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 63.7 bits (154), Expect = 3e-11
 Identities = 22/126 (17%), Positives = 30/126 (23%), Gaps = 3/126 (2%)

Query: 155 NPGMAYAPQPPPPMPQGYANPTAYPAPQKDVYPP---PPDAHKAALAYPAPGYPPQPQAY 211
              + Y     P        P   PA     Y     PP     ++       P Q Q +
Sbjct: 11  QAQLQYGQNATPLQQPAQFMPPQDPAAAGMSYGQMGMPPQGAVPSMGQQQFLTPAQEQLH 70

Query: 212 PLPGGYPPPGYAAGAPAPPHPGGYAPVQGPGGMNYQPSPPGSAMGPAGYAYAAPPAAPQQ 271
                             P     A +Q    +             A  AY  P AA  Q
Sbjct: 71  QQIDQATTSMNDMHLHNVPLVDPNAYMQPQVPVQMGTPLQQQQQPMAAPAYGQPSAAMGQ 130

Query: 272 HSKNSN 277
           + +  N
Sbjct: 131 NMRPMN 136

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 62.5 bits (151), Expect = 6e-11
 Identities = 18/130 (13%), Positives = 24/130 (18%), Gaps = 8/130 (6%)

Query: 151 QSNDNPGMAYAPQPPPPMPQGYANPTAYPAPQKDVYPPPPDAHKAALAYPAPGYPPQPQA 210
           Q+    G    P   P       +P A       +  PP            P    Q   
Sbjct: 11  QAQLQYGQNATPLQQPAQFMPPQDPAAAGMSYGQMGMPPQ--------GAVPSMGQQQFL 62

Query: 211 YPLPGGYPPPGYAAGAPAPPHPGGYAPVQGPGGMNYQPSPPGSAMGPAGYAYAAPPAAPQ 270
            P           A            P+  P        P                 A  
Sbjct: 63  TPAQEQLHQQIDQATTSMNDMHLHNVPLVDPNAYMQPQVPVQMGTPLQQQQQPMAAPAYG 122

Query: 271 QHSKNSNNSI 280
           Q S     ++
Sbjct: 123 QPSAAMGQNM 132

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 62.5 bits (151), Expect = 7e-11
 Identities = 12/128 (9%), Positives = 17/128 (13%), Gaps = 2/128 (1%)

Query: 154 DNPGMAYAPQPPPP--MPQGYANPTAYPAPQKDVYPPPPDAHKAALAYPAPGYPPQPQAY 211
            +    Y                P  +  PQ                  A     Q Q  
Sbjct: 3   HHKKRVYPQAQLQYGQNATPLQQPAQFMPPQDPAAAGMSYGQMGMPPQGAVPSMGQQQFL 62

Query: 212 PLPGGYPPPGYAAGAPAPPHPGGYAPVQGPGGMNYQPSPPGSAMGPAGYAYAAPPAAPQQ 271
                           +      +           QP  P     P         A    
Sbjct: 63  TPAQEQLHQQIDQATTSMNDMHLHNVPLVDPNAYMQPQVPVQMGTPLQQQQQPMAAPAYG 122

Query: 272 HSKNSNNS 279
               +   
Sbjct: 123 QPSAAMGQ 130

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 62.2 bits (150), Expect = 8e-11
 Identities = 16/132 (12%), Positives = 19/132 (14%)

Query: 149 ANQSNDNPGMAYAPQPPPPMPQGYANPTAYPAPQKDVYPPPPDAHKAALAYPAPGYPPQP 208
                     A   Q P           A  +  +   PP                  Q 
Sbjct: 10  PQAQLQYGQNATPLQQPAQFMPPQDPAAAGMSYGQMGMPPQGAVPSMGQQQFLTPAQEQL 69

Query: 209 QAYPLPGGYPPPGYAAGAPAPPHPGGYAPVQGPGGMNYQPSPPGSAMGPAGYAYAAPPAA 268
                                  P  Y   Q P  M          M    Y   +    
Sbjct: 70  HQQIDQATTSMNDMHLHNVPLVDPNAYMQPQVPVQMGTPLQQQQQPMAAPAYGQPSAAMG 129

Query: 269 PQQHSKNSNNSI 280
                 N    I
Sbjct: 130 QNMRPMNQLYPI 141

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 60.2 bits (145), Expect = 4e-10
 Identities = 14/129 (10%), Positives = 21/129 (16%)

Query: 144 NNNNNANQSNDNPGMAYAPQPPPPMPQGYANPTAYPAPQKDVYPPPPDAHKAALAYPAPG 203
           N       +   P    A         G     A P+  +  +  P           A  
Sbjct: 19  NATPLQQPAQFMPPQDPAAAGMSYGQMGMPPQGAVPSMGQQQFLTPAQEQLHQQIDQATT 78

Query: 204 YPPQPQAYPLPGGYPPPGYAAGAPAPPHPGGYAPVQGPGGMNYQPSPPGSAMGPAGYAYA 263
                  + +P   P        P           Q      Y                 
Sbjct: 79  SMNDMHLHNVPLVDPNAYMQPQVPVQMGTPLQQQQQPMAAPAYGQPSAAMGQNMRPMNQL 138

Query: 264 APPAAPQQH 272
            P     + 
Sbjct: 139 YPIDLLTEL 147

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 59.5 bits (143), Expect = 6e-10
 Identities = 18/156 (11%), Positives = 31/156 (19%), Gaps = 1/156 (0%)

Query: 131 FGPSSSANNNNNNNNNNNANQSNDNPGMAYAPQPPPPMPQGYANPTAYPAPQKDVYPPPP 190
           F P         +            P M       P   Q +           D++    
Sbjct: 29  FMPPQDPAAAGMSYGQMGMPPQGAVPSMGQQQFLTPAQEQLHQQIDQATTSMNDMHLHNV 88

Query: 191 DAHKAALAYPAPGYPPQPQAYPLPGGYPPPGYAAGAPAPPHPGGYAPVQGPGGMNYQPSP 250
                  AY  P  P Q          P    A G P+        P+     ++     
Sbjct: 89  PLVDPN-AYMQPQVPVQMGTPLQQQQQPMAAPAYGQPSAAMGQNMRPMNQLYPIDLLTEL 147

Query: 251 PGSAMGPAGYAYAAPPAAPQQHSKNSNNSIKKKGMA 286
           P                  +    +  ++     + 
Sbjct: 148 PPPITDLTLPPPPLVIPPERMLVPSELSNASPDYIR 183

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 54.1 bits (129), Expect = 4e-08
 Identities = 17/145 (11%), Positives = 29/145 (20%), Gaps = 2/145 (1%)

Query: 129 YKFGPSSSANNNNNNNNNNNANQSNDNPGMAYAPQPPPPMPQGYANPTAYPAPQKDVYPP 188
            ++G +++               +           P   +P         PA ++     
Sbjct: 14  LQYGQNATPLQQPAQFMPPQDPAAAGMSYGQMGMPPQGAVPSMGQQQFLTPAQEQLHQQI 73

Query: 189 PPDAHKAALAYPAPGYPPQPQAYPLPGGYPPPGYAAGAPAPPHPGGYAPVQGPGGMNYQP 248
                     +        P AY  P    P            P        P     Q 
Sbjct: 74  DQATTSMNDMHLHNVPLVDPNAYMQPQ--VPVQMGTPLQQQQQPMAAPAYGQPSAAMGQN 131

Query: 249 SPPGSAMGPAGYAYAAPPAAPQQHS 273
             P + + P       PP       
Sbjct: 132 MRPMNQLYPIDLLTELPPPITDLTL 156

>1wfj_A Putative elicitor-responsive gene; C2 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, plant protein; NMR {Arabidopsis thaliana} SCOP: b.7.1.2 Length = 136

 Score = 63.1 bits (154), Expect = 1e-12
 Identities = 32/131 (24%), Positives = 54/131 (41%), Gaps = 13/131 (9%)

Query: 6   LDITVVSASDLKTAGMFSKMNVYAVVTIFGESQTTSVARDCGVRPTWNHQMRFNIDEAAA 65
           L++ +VSA  L+ A   + M+ Y  +T   + Q ++VA   G  P WN    F + E   
Sbjct: 12  LEVVLVSAKGLEDADFLNNMDPYVQLTCRTQDQKSNVAEGMGTTPEWNETFIFTVSEG-- 69

Query: 66  MQNNLTI-VYSIRSTGGCFGNSD-LGEVFVPVKEMLLRSNGDDDKPMSYNITTPGGRAKG 123
               L   ++            D +GE  +P++ +          P +YN+       KG
Sbjct: 70  -TTELKAKIFDKDV----GTEDDAVGEATIPLEPVF---VEGSIPPTAYNV-VKDEEYKG 120

Query: 124 VLNVSYKFGPS 134
            + V+  F PS
Sbjct: 121 EIWVALSFKPS 131

>2nq3_A Itchy homolog E3 ubiquitin protein ligase; C2 domain, UBL conjugation pathway, structural genomics consortium, SGC; 1.80A {Homo sapiens} SCOP: b.7.1.1 Length = 173

 Score = 56.4 bits (136), Expect = 7e-10
 Identities = 22/101 (21%), Positives = 40/101 (39%), Gaps = 11/101 (10%)

Query: 6   LDITVVSASDLKTAGMFSKMNVYAVVTIFGESQTTSVARDCGVRPTWNHQMRFNIDEAAA 65
           L ITV+SA   +    +   + Y  VT+ G+S+ T    +    P W   +   +     
Sbjct: 38  LQITVISAKLKENKKNWFGPSPYVEVTVDGQSKKTEKCNNT-NSPKWKQPLTVIVTP--- 93

Query: 66  MQNNLTI-VYSIRSTGGCFGNSD-LGEVFVPVKEMLLRSNG 104
             + L   V+S ++      +   LG   + + E L  +N 
Sbjct: 94  -VSKLHFRVWSHQT----LKSDVLLGTAALDIYETLKSNNM 129

>2dmh_A Myoferlin; beta-sandwich, FER-1-like protein 3, muscular dystrophy, cardiomyopathy, membrane fusion, dystrophin, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 140

 Score = 49.3 bits (118), Expect = 1e-07
 Identities = 24/137 (17%), Positives = 50/137 (36%), Gaps = 9/137 (6%)

Query: 6   LDITVVSASDLKTAGMFSKMNVYAVVTIFGESQTTSVARDCGVRPTWNHQMRFNIDEAAA 65
           L + V SAS++     F K +    V    E + T    +  + P WN  + F++     
Sbjct: 9   LRVIVESASNIP-KTKFGKPDPIVSVIFKDEKKKTKKVDNE-LNPVWNEILEFDLRGIPL 66

Query: 66  MQNN-LTI-VYSIRSTGGCFGNSD-LGEVFVPVKEMLLRSNGDDDKPMSYNITTPGGRAK 122
             ++ L I V          G +  +G   V +K++    +      +   +   G    
Sbjct: 67  DFSSSLGIIVKDF----ETIGQNKLIGTATVALKDLTGDQSRSLPYKLISLLNEKGQDTG 122

Query: 123 GVLNVSYKFGPSSSANN 139
             +++   + P S  ++
Sbjct: 123 ATIDLVIGYDPPSGPSS 139

>1twf_A B220, DNA-directed RNA polymerase II largest subunit; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: e.29.1.2 PDB: 1i3q_A 1i6h_A 1k83_A* 1nik_A 1nt9_A 1pqv_A 1r5u_A 1r9s_A* 1r9t_A* 1sfo_A* 1twa_A* 1twc_A* 1i50_A* 1twg_A* 1twh_A* 1wcm_A 1y1v_A 1y1w_A 1y1y_A 1y77_A* ... Length = 1733

 Score = 48.6 bits (115), Expect = 2e-06
 Identities = 32/163 (19%), Positives = 61/163 (37%), Gaps = 16/163 (9%)

Query: 132  GPSSSANNNNNNNNNNNANQSNDNPG--------MAYAPQPPP--PMPQGYANPTAYPAP 181
              S ++ + +  + + +    + +P          +Y+P  P   P    Y+  +   +P
Sbjct: 1576 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1635

Query: 182  QKDVYPPPPDAHKAALAYPAPGYPPQPQAY-PLPGGYPPPGYAAGAPAPPHPGGYAPVQG 240
                Y P   ++       +P Y P   AY P    Y P    + +P  P     +P   
Sbjct: 1636 TSPSYSPTSPSYSPT----SPSYSPTSPAYSPTSPSYSPTS-PSYSPTSPSYSPTSPSYS 1690

Query: 241  PGGMNYQPSPPGSAMGPAGYAYAAPPAAPQQHSKNSNNSIKKK 283
            P   NY P+ P  +    GY+  +P  +P+Q  +  N +   +
Sbjct: 1691 PTSPNYSPTSPSYSPTSPGYSPGSPAYSPKQDEQKHNENENSR 1733

>1twf_A B220, DNA-directed RNA polymerase II largest subunit; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: e.29.1.2 PDB: 1i3q_A 1i6h_A 1k83_A* 1nik_A 1nt9_A 1pqv_A 1r5u_A 1r9s_A* 1r9t_A* 1sfo_A* 1twa_A* 1twc_A* 1i50_A* 1twg_A* 1twh_A* 1wcm_A 1y1v_A 1y1w_A 1y1y_A 1y77_A* ... Length = 1733

 Score = 46.6 bits (110), Expect = 9e-06
 Identities = 33/167 (19%), Positives = 53/167 (31%), Gaps = 22/167 (13%)

Query: 109  PMSYNITTPGGRAKGVLNVSYKFGPSSSANNNNNNNNNNNANQSNDNPGMAYAPQPPPPM 168
               +        + G    S  F P+S                S  +P  +       P 
Sbjct: 1520 TSPFGAYGEAPTSPGFGVSSPGFSPTSPTY-------------SPTSPAYSPTSPSYSPT 1566

Query: 169  PQGYANPTAYPAPQKDVYPP--PPDAHKAALAYP-APGYPPQPQAY-PLPGGYPP--PGY 222
               Y+  +   +P    Y P  P  +  +    P +P Y P   +Y P    Y P  P Y
Sbjct: 1567 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1626

Query: 223  AAGAPAPPHPGGYAPVQGPGGMNYQPSPPGSAMGPAGYAYAAPPAAP 269
               +P  P     +P   P   +Y P+ P  +     Y+  +P  +P
Sbjct: 1627 ---SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPSYSP 1670

>1twf_A B220, DNA-directed RNA polymerase II largest subunit; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: e.29.1.2 PDB: 1i3q_A 1i6h_A 1k83_A* 1nik_A 1nt9_A 1pqv_A 1r5u_A 1r9s_A* 1r9t_A* 1sfo_A* 1twa_A* 1twc_A* 1i50_A* 1twg_A* 1twh_A* 1wcm_A 1y1v_A 1y1w_A 1y1y_A 1y77_A* ... Length = 1733

 Score = 42.8 bits (100), Expect = 1e-04
 Identities = 26/179 (14%), Positives = 48/179 (26%), Gaps = 8/179 (4%)

Query: 105  DDDKPMSYNITTPGGRAKGVLNVSYKFGPSSSANNNNNNNNNNNANQSNDNPGMAYAPQP 164
            D++  + Y         +   +       + S   N + +  +    S   P +      
Sbjct: 1446 DEESLVKYMPEQKITEIEDGQDGGVTPYSNESGLVNADLDVKDELMFS---PLVDSGSND 1502

Query: 165  PPPMPQGYANPTAYPAPQKDVYPPPPDAHKAALAYPAPGYPPQPQAY-PLPGGYPPPGYA 223
                         Y                      +PG+ P    Y P    Y P   +
Sbjct: 1503 AMAGGFTAYGGADYGEATSPFGAYGEAPTSPGFGVSSPGFSPTSPTYSPTSPAYSPTSPS 1562

Query: 224  AGAPAPPHPGGYAPVQGPGGMNYQPSPPGSAMGPAGYAYAAP---PAAPQQHSKNSNNS 279
               P  P     +P   P   +Y P+ P  +     Y+  +P   P +P     + + S
Sbjct: 1563 YS-PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS 1620

>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor, chromophore, glycoprotein, lipoprotein, membrane, palmitate phosphorylation; HET: BOG RET PLM TWT PC1; 2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A* Length = 448

 Score = 48.0 bits (114), Expect = 2e-06
 Identities = 23/101 (22%), Positives = 30/101 (29%), Gaps = 4/101 (3%)

Query: 130 KFGPSSSANNNNNNNNNNNANQSNDNPGMAYAPQPPPPMPQGYANPTAYPAPQKDVYPPP 189
           +F    + ++ +          S+  P    A                   P +   PPP
Sbjct: 338 QFDDKETEDDKDAETEIPAGESSDAAPSADAAQMKEMMAMMQKMQQQQAAYPPQGYAPPP 397

Query: 190 PDAHKAAL---AYPAPGYPPQPQAYPLPGGYPPPGYAAGAP 227
                       YP  GYPPQ    P P G PP G    AP
Sbjct: 398 QGYPPQGYPPQGYPPQGYPPQGYPPP-PQGAPPQGAPPAAP 437

>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A* Length = 433

 Score = 45.9 bits (108), Expect = 9e-06
 Identities = 18/108 (16%), Positives = 29/108 (26%), Gaps = 5/108 (4%)

Query: 168 MPQGYANPTAYPAPQKDVYPPPPDAHKAALAYPAPGYPPQPQAYPLPGGYPPPGYAAGAP 227
               + + +        +  P      AA  + A  +PP     P P   PPP   A   
Sbjct: 4   SHHHHHHSSGLVPRGSHMVIPSASVTSAASDFLAALHPPVTVPDPAP---PPPPAPAAGN 60

Query: 228 APPHPGGYA--PVQGPGGMNYQPSPPGSAMGPAGYAYAAPPAAPQQHS 273
            P    G +       G      +    A+          PA+    +
Sbjct: 61  PPDTVTGDSVLQRILRGPTGPGTTSLAPAVRYGRQPGPEAPASAPPAA 108

>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A* Length = 433

 Score = 43.6 bits (102), Expect = 6e-05
 Identities = 19/122 (15%), Positives = 29/122 (23%), Gaps = 2/122 (1%)

Query: 161 APQPPPPMPQGYANPTAYPAPQKDVYPPPPDAHKAALAYPAPGYPPQPQAYPLPGGYPPP 220
                 P     +  + + A         PD        PA G PP              
Sbjct: 18  GSHMVIPSASVTSAASDFLAALHPP-VTVPDPAPPPPPAPAAGNPPDTVTGDSVLQRILR 76

Query: 221 GYAAGAPAPPHPGGYAPVQGPGGMNYQPSPPGSAMGPAGYAYAAPPAAPQQHSKNSNNSI 280
           G          P      + PG      +PP +     G  +   P       +  +  I
Sbjct: 77  GPTGPGTTSLAPAV-RYGRQPGPEAPASAPPAAGRAVPGLYHHPVPEPDPVRVEEVSRRI 135

Query: 281 KK 282
           K+
Sbjct: 136 KR 137

>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A* Length = 433

 Score = 42.8 bits (100), Expect = 1e-04
 Identities = 22/116 (18%), Positives = 29/116 (25%), Gaps = 6/116 (5%)

Query: 157 GMAYAPQPPPPMPQGYANPTAYPAPQKDVYPPPPDAHKAALAYPAPGYPPQPQAYPLPGG 216
           G ++             +    P+    V     D   A         P  P       G
Sbjct: 2   GSSHHHHHHSSGLVPRGSHMVIPSAS--VTSAASDFLAALHPPVTVPDPAPPPPPAPAAG 59

Query: 217 YPPPGYAAGAPAPPHPGGYAPVQGPGGMNYQPS-PPGSAMGPAGYAYAAPPAAPQQ 271
            PP      +       G     GPG  +  P+   G   GP   A A P A    
Sbjct: 60  NPPDTVTGDSVLQRILRGPT---GPGTTSLAPAVRYGRQPGPEAPASAPPAAGRAV 112

>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A* Length = 433

 Score = 42.4 bits (99), Expect = 1e-04
 Identities = 22/127 (17%), Positives = 32/127 (25%), Gaps = 6/127 (4%)

Query: 147 NNANQSNDNPGMAYAPQPPPPMPQGYANPTAYPAPQKDVYPPPPDAHKAALAYPAPGYPP 206
           +++        M             +      P    D  PPPP A   A   P      
Sbjct: 10  HSSGLVPRGSHMVIPSASVTSAASDFLAALHPPVTVPDPAPPPPPA--PAAGNPPDTVTG 67

Query: 207 QPQAYPLPGGYPPPGYAAGAPAPPHPGGYAPVQGPGGMNYQPSPPGSAMGPAGYAYAAPP 266
                 +  G   PG  + APA  +        GP      P   G A+    +     P
Sbjct: 68  DSVLQRILRGPTGPGTTSLAPAVRYG----RQPGPEAPASAPPAAGRAVPGLYHHPVPEP 123

Query: 267 AAPQQHS 273
              +   
Sbjct: 124 DPVRVEE 130

>2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2 Length = 284

 Score = 45.2 bits (107), Expect = 1e-05
 Identities = 23/138 (16%), Positives = 50/138 (36%), Gaps = 9/138 (6%)

Query: 3   SRALDITVVSASDLKTAGMFSKMNVYAVVTIF---GESQTTSVARDCGVRPTWNHQMRFN 59
           +  L + ++ A++L    M    + Y  V +     +   T V R   + P +N Q  F 
Sbjct: 18  NNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKT-LNPVFNEQFTFK 76

Query: 60  IDEAAAMQNNLTI-VYSIRSTGGCFGNSDLGEVFVPVKEMLLRSNGDDDKPMSYNITTPG 118
           +  +      L + VY          +  +GE  VP+  +    +  ++     +     
Sbjct: 77  VPYSELAGKTLVMAVYDFDRFS---KHDIIGEFKVPMNTVDF-GHVTEEWRDLQSAEKEE 132

Query: 119 GRAKGVLNVSYKFGPSSS 136
               G +  S ++ P++ 
Sbjct: 133 QEKLGDICFSLRYVPTAG 150

>2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2 Length = 284

 Score = 40.9 bits (96), Expect = 3e-04
 Identities = 16/98 (16%), Positives = 38/98 (38%), Gaps = 10/98 (10%)

Query: 3   SRALDITVVSASDLKTAGMFSKMNVYAVVTIF-----GESQTTSVARDCGVRPTWNHQMR 57
           +  L + ++ A +LK   +    + Y  + +       + + T++ +   + P +N    
Sbjct: 149 AGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKK-NTLNPYYNESFS 207

Query: 58  FNIDEAAAMQNNLTI-VYSIRSTGGCFGNSDLGEVFVP 94
           F +      +  + + V      G    N  +G+VFV 
Sbjct: 208 FEVPFEQIQKVQVVVTVLDYDKIG---KNDAIGKVFVG 242

>1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A Length = 296

 Score = 43.7 bits (103), Expect = 4e-05
 Identities = 20/101 (19%), Positives = 42/101 (41%), Gaps = 10/101 (9%)

Query: 3   SRALDITVVSASDLKTAGMFSKMNVYAVVTIFG-----ESQTTSVARDCGVRPTWNHQMR 57
           +  L +T++ AS+LK   +    + Y   ++       + + TS+ +   + PT+N  + 
Sbjct: 151 AGLLTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKK-NTLNPTYNEALV 209

Query: 58  FNIDEAAAMQNNLTI-VYSIRSTGGCFGNSDLGEVFVPVKE 97
           F++   +     L+I V      G    N  +G   V  + 
Sbjct: 210 FDVAPESVENVGLSIAVVDYDCIG---HNEVIGVCRVGPEA 247

>1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A Length = 296

 Score = 43.3 bits (102), Expect = 5e-05
 Identities = 26/138 (18%), Positives = 45/138 (32%), Gaps = 8/138 (5%)

Query: 3   SRALDITVVSASDLKTAGMFSKMNVYAVVTIF---GESQTTSVARDCGVRPTWNHQMRFN 59
           S  L + ++ A DL         + Y  + +     +   T V R   + P +N   +F+
Sbjct: 19  SDQLVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRKT-LNPIFNETFQFS 77

Query: 60  IDEAAAMQNNLTI-VYSIRSTGGCFGNSDLGEVFVPVKEMLLRSNGDDDKPMSYNITTPG 118
           +  A   Q  L   VY          +  +G+V +     L     D             
Sbjct: 78  VPLAELAQRKLHFSVYDFDRFS---RHDLIGQVVLDNLLELAEQPPDRPLWRDILEGGSE 134

Query: 119 GRAKGVLNVSYKFGPSSS 136
               G LN S  + P++ 
Sbjct: 135 KADLGELNFSLCYLPTAG 152

>3kwu_A MUNC13-1; calcium binding protein, phospholipid binding protein, metal binding protein; HET: GOL; 1.37A {Rattus norvegicus} PDB: 3kwt_A* Length = 148

 Score = 42.1 bits (99), Expect = 4e-05
 Identities = 18/102 (17%), Positives = 34/102 (33%), Gaps = 13/102 (12%)

Query: 6   LDITVVSASDLKTAGMFSKMNVYAVVTIFGESQTTSVARDCGVRPTWNHQMRFNIDEAAA 65
           + ITVV A  L+        + Y  V +    + T       + P W     F    ++ 
Sbjct: 19  ISITVVCAQGLQAKDKTGSSDPYVTVQVGKTKKRTKTIYGN-LNPVWEENFHFECHNSS- 76

Query: 66  MQNNLTI-VY-------SIRSTGGCFGNSD-LGEVFVPVKEM 98
             + + + V        S         + D LG+  + V+ +
Sbjct: 77  --DRIKVRVLDEDDDIKSRVKQRFKRESDDFLGQTIIEVRTL 116

>3pyc_A E3 ubiquitin-protein ligase smurf1; phospholipid binding, membrane associate, lipid binding PROT; 1.96A {Homo sapiens} PDB: 2jqz_A Length = 132

 Score = 40.8 bits (96), Expect = 9e-05
 Identities = 19/99 (19%), Positives = 39/99 (39%), Gaps = 8/99 (8%)

Query: 2  GSRALDITVVSASDLKTAGMFSKMNVYAVVTIFGESQT--TSVARDCGVRPTWNHQMRFN 59
              + +TV+ A +L     F   + +A + + G  Q   T   ++  + P WN      
Sbjct: 3  EFIKIRLTVLCAKNLAKKDFFRLPDPFAKIVVDGSGQCHSTDTVKNT-LDPKWNQHYDLY 61

Query: 60 IDEAAAMQNNLTI-VYSIRSTGGCFGNSDLGEVFVPVKE 97
          + +     +++TI V++ +      G   LG V +    
Sbjct: 62 VGK----TDSITISVWNHKKIHKKQGAGFLGCVRLLSNA 96

>3h0g_A DNA-directed RNA polymerase II subunit RPB1; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe} Length = 1752

 Score = 43.1 bits (101), Expect = 1e-04
 Identities = 35/203 (17%), Positives = 62/203 (30%), Gaps = 16/203 (7%)

Query: 81   GCFG----NSDLGEVFVPVKEMLLRSNGDDDKPMSYNITTPGGRAKGVLNVSYKFGPSSS 136
            G F        L    +      L  +G     +     TP  R+  V +       +++
Sbjct: 1445 GAFDIYLDQDMLMNYSLGTAVPTLAGSGMGTSQLPEGAGTPYERSPMVDSGFVGSPDAAA 1504

Query: 137  ANNNNNNNNNNNANQSNDNPGMAYAPQPPPPMPQGYANPTAYPAPQKDVYPP------PP 190
             +      +       +     A +P      P   +  ++  +P   +  P      P 
Sbjct: 1505 FSPLVQGGSEGREGFGDYGLLGAASPYKGVQSPGYTSPFSSAMSPGYGLTSPSYSPSSPG 1564

Query: 191  DAHKAALAYPAPGY-PPQPQAYPLPGGYPP--PGYAAGAPAPPHPGGYAPVQGPGGMNYQ 247
             +   A    +P Y P  P   P    Y P  P Y+   P  P     +P   P   +Y 
Sbjct: 1565 YSTSPAYMPSSPSYSPTSPSYSPTSPSYSPTSPSYS---PTSPSYSATSPSYSPTSPSYS 1621

Query: 248  PSPPGSAMGPAGYAYAAPPAAPQ 270
            P+ P  +     Y+  +P  +P 
Sbjct: 1622 PTSPSYSPTSPSYSPTSPSYSPT 1644

>3h0g_A DNA-directed RNA polymerase II subunit RPB1; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe} Length = 1752

 Score = 42.8 bits (100), Expect = 1e-04
 Identities = 31/180 (17%), Positives = 56/180 (31%), Gaps = 13/180 (7%)

Query: 105  DDDKPMSYNITTPGGRAKGVLNVSYKFGPSSSANNNNNNNNNNNANQSNDNPGMAYAPQP 164
            D D  M+Y++ T      G    + +    +      +   ++    S D    +   Q 
Sbjct: 1452 DQDMLMNYSLGTAVPTLAGSGMGTSQLPEGAGTPYERSPMVDSGFVGSPDAAAFSPLVQG 1511

Query: 165  PPPMPQGYANPTAYPAPQKDVYPPPPDAHKAALAYPAPGYPPQPQAYPL--PGGYPPPGY 222
                 +G+ +     A         P       +  +PGY     +Y    PG    P Y
Sbjct: 1512 GSEGREGFGDYGLLGAASPYKGVQSPGYTSPFSSAMSPGYGLTSPSYSPSSPGYSTSPAY 1571

Query: 223  AAGAPA--PPHPG------GYAPVQG---PGGMNYQPSPPGSAMGPAGYAYAAPPAAPQQ 271
               +P+  P  P        Y+P      P   +Y  + P  +     Y+  +P  +P  
Sbjct: 1572 MPSSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSATSPSYSPTSPSYSPTSPSYSPTS 1631

>3h0g_A DNA-directed RNA polymerase II subunit RPB1; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe} Length = 1752

 Score = 42.8 bits (100), Expect = 2e-04
 Identities = 35/173 (20%), Positives = 63/173 (36%), Gaps = 19/173 (10%)

Query: 102  SNGDDDKPMSYNITTPGGRAKGVLNVSYKFGPSSSANNNNNNNNNNNANQSNDNPGMAYA 161
            S         Y +T+P          S  +  S +   ++ + +  + + S  +P  +Y+
Sbjct: 1541 SPFSSAMSPGYGLTSPSY-----SPSSPGYSTSPAYMPSSPSYSPTSPSYSPTSP--SYS 1593

Query: 162  PQPPPPMPQ--GYANPTAYPAPQKDVYPPPPDAHKAALAYPAPGYPPQPQAY-PLPGGYP 218
            P  P   P    Y+  +   +P    Y P   ++       +P Y P   +Y P    Y 
Sbjct: 1594 PTSPSYSPTSPSYSATSPSYSPTSPSYSPTSPSYSPT----SPSYSPTSPSYSPTSPSYS 1649

Query: 219  P--PGYAAGAPAPPHPGGYAPVQGPGGMNYQPSPPGSAMGPAGYAYAAPPAAP 269
            P  P Y   +P  P     +P   P   +Y P+ P  +     Y+  +P  +P
Sbjct: 1650 PTSPSY---SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1699

>2fk9_A Protein kinase C, ETA type; ATP-binding, metal-binding, nucleotide-binding, diacylglycerol binding, serine/threonine-protein kinase, transferase; 1.75A {Homo sapiens} Length = 157

 Score = 40.7 bits (95), Expect = 1e-04
 Identities = 16/125 (12%), Positives = 42/125 (33%), Gaps = 20/125 (16%)

Query: 6   LDITVVSASDLKTAGMFSK----------MNVYAVVTIFGESQTTSVARDCGVRPTWNHQ 55
           L + +  A  L+      +          ++ Y  V++       +  +    +PT+N +
Sbjct: 31  LRVRIGEAVGLQPTRWSLRHSLFKKGHQLLDPYLTVSVDQVRVGQTSTKQKTNKPTYNEE 90

Query: 56  MRFNIDEAAAMQNNLTI-VYSIRSTGGCFGNSD-LGEVFVPVKEMLLRSNGDDDKPMSYN 113
              N+ +      +L + V+   +     G    +    +  +E+L  +   D      +
Sbjct: 91  FCANVTDG----GHLELAVFH-ETP---LGYDHFVANCTLQFQELLRTTGASDTFEGWVD 142

Query: 114 ITTPG 118
           +   G
Sbjct: 143 LEPEG 147

>1gmi_A Protein kinase C, epsilon type; PKC, C2 domain, X-RAY, phospholipids, PKC epsilon.; 1.7A {Rattus rattus} SCOP: b.7.1.1 Length = 136

 Score = 40.2 bits (94), Expect = 1e-04
 Identities = 13/116 (11%), Positives = 35/116 (30%), Gaps = 21/116 (18%)

Query: 6   LDITVVSASDLKTAGMFSK-----------MNVYAVVTIFGESQTTSVARDCGVRPTWNH 54
           L I +  A  LK      +           ++ Y  + +       +  +     P W+ 
Sbjct: 8   LKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDDSRIGQTATKQKTNSPAWHD 67

Query: 55  QMRFNIDEAAAMQNNLTI-VYSIRSTGGCFGNSD-LGEVFVPVKEMLLRSNGDDDK 108
           +   ++         + + V+   +     G  D +    +  +E+L   +   + 
Sbjct: 68  EFVTDVCNG----RKIELAVFH-DAP---IGYDDFVANCTIQFEELLQNGSRHFED 115

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	336
1wfj_A	136	Putative elicitor-responsive gene; C2 domain, rike	99.89
2dmh_A	140	Myoferlin; beta-sandwich, FER-1-like protein 3, mu	99.89
3m7f_B	176	E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB1	99.87
2ep6_A	133	MCTP2 protein; beta sandwich, Ca2+ binding, membra	99.87
3b7y_A	153	E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-	99.87
3kwu_A	148	MUNC13-1; calcium binding protein, phospholipid bi	99.86
1gmi_A	136	Protein kinase C, epsilon type; PKC, C2 domain, X-	99.86
2fk9_A	157	Protein kinase C, ETA type; ATP-binding, metal-bin	99.86
2nq3_A	173	Itchy homolog E3 ubiquitin protein ligase; C2 doma	99.84
3pyc_A	132	E3 ubiquitin-protein ligase smurf1; phospholipid b	99.84
2cjt_A	131	UNC-13 homolog A, MUNC13-1; phorbol-ester binding,	99.83
1rlw_A	126	Phospholipase A2, CALB domain; hydrolase, C2 domai	99.82
2b3r_A	134	Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA	99.78
2cjs_A	167	UNC-13 homolog A, MUNC13-1; neurotransmitter trans	99.78
2z0u_A	155	WW domain-containing protein 1; C2 domain, alterna	99.78
3fbk_A	153	RGS3, RGP3, regulator of G-protein signaling 3; al	99.77
1a25_A	149	CALB, protein kinase C (beta); calcium++/phospholi	99.77
2bwq_A	129	Regulating synaptic membrane exocytosis protein 2;	99.77
3f04_A	143	Synaptotagmin-1; C2A, calcium, cell junction, cyto	99.77
1rsy_A	152	Synaptotagmin I; calcium/phospholipid binding prot	99.77
2d8k_A	141	Synaptotagmin VII; exocytosis, calcium binding, ly	99.77
1ugk_A	138	Synaptotagmin IV, KIAA1342; beta sandwich, structu	99.77
3rdl_A	137	Protein kinase C alpha type; protein kinase PKC, t	99.77
2dmg_A	142	KIAA1228 protein; beta-sandwich, structural genomi	99.77
3fdw_A	148	Synaptotagmin-like protein 4; structural genomics,	99.76
1v27_A	141	Regulating synaptic membrane exocytosis protein 2;	99.76
3l9b_A	144	Otoferlin; C2-domain, beta-sheets, cell membrane,	99.75
2chd_A	142	Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium	99.75
1rh8_A	142	Piccolo protein; beta-sandwich, metal binding prot	99.75
2q3x_A	171	Regulating synaptic membrane exocytosis protein 1;	99.75
2r83_A	284	Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cel	99.74
1w15_A	153	Synaptotagmin IV; metal binding protein, endocytos	99.74
3n5a_A	138	Synaptotagmin-7; calcium/phospholipid binding prot	99.74
2cm5_A	166	Rabphilin-3A; protein transport, zinc-finger, Ca2+	99.74
1tjx_A	159	Similar to synaptotagmini/P65; C2B domain, calcium	99.73
2enp_A	147	B/K protein; C2 type 1,beta sandwich, structural g	99.73
1dqv_A	296	Synaptotagmin III; beta sandwich, calcium ION, C2	99.73
1wfm_A	138	Synaptotagmin XIII; C2 domain, exocytosis, neurotr	99.73
3jzy_A	510	Intersectin 2; C2 domain, structural genomics cons	99.7
1djx_A	624	PLC-D1, phosphoinositide-specific phospholipase C,	99.68
3nsj_A	540	Perforin-1; pore forming protein, immune system; H	99.67
2r83_A	284	Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cel	99.58
1cjy_A	749	CPLA2, protein (cytosolic phospholipase A2); lipid	99.53
1dqv_A	296	Synaptotagmin III; beta sandwich, calcium ION, C2	99.49
3bxj_A	483	RAS GTPase-activating protein syngap; GTPase activ	99.49
3ohm_B	885	1-phosphatidylinositol-4,5-bisphosphate phosphodi	99.45
2zkm_X	799	1-phosphatidylinositol-4,5-bisphosphate phosphodie	99.43
3qr0_A	816	Phospholipase C-beta (PLC-beta); PH domain, EF han	99.42
3pfq_A	674	PKC-B, PKC-beta, protein kinase C beta type; phosp	99.39
1yrk_A	126	NPKC-delta, protein kinase C, delta type; C2 domai	99.16
2enj_A	138	NPKC-theta, protein kinase C theta type; beta-sand	99.14
1dx0_A	219	Prion protein; brain, repeat; NMR {Bos taurus} SCO	96.7
2yrb_A	156	Protein fantom; beta sandwich, NPPSFA, national pr	96.46
3l4c_A	220	Dedicator of cytokinesis protein 1; DOCK180, DOCK1	95.91
2wxf_A	940	Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca	95.23
3hhm_A	1091	Phosphatidylinositol-4,5-bisphosphate 3-kinase cat	95.17
1e7u_A	961	Phosphatidylinositol 3-kinase catalytic subunit; p	93.23
2y3a_A	1092	Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca	90.86
2qzq_A	152	Axin interactor, dorsalization associated protein;	89.41

>1wfj_A Putative elicitor-responsive gene; C2 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, plant protein; NMR {Arabidopsis thaliana} SCOP: b.7.1.2

Probab=99.89  E-value=3e-23  Score=171.54  Aligned_cols=126  Identities=25%  Similarity=0.444  Sum_probs=107.3

Q ss_pred             CccEEEEEEEEecCCCCCCCCCCcceEEEEEEcCcceEEEEeeCCCCCCeeeeEEEEEecchhhhcCCcEEEEEEeecCC
Q 019724            2 GSRALDITVVSASDLKTAGMFSKMNVYAVVTIFGESQTTSVARDCGVRPTWNHQMRFNIDEAAAMQNNLTIVYSIRSTGG   81 (336)
Q Consensus         2 ~~g~L~V~vi~Ak~L~~~d~~g~~dPYv~v~l~~~~~kTkv~~~~t~nP~WnE~f~F~v~~~~~~~~~~~L~v~V~d~d~   81 (336)
                      ..++|+|+|++|++|...+.++++||||+|++...++||++++++++||+|||+|.|.+...     ...|+|+|||+|.
T Consensus         8 ~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~kT~~~~~~~~nP~Wne~f~f~v~~~-----~~~l~~~V~d~~~   82 (136)
T 1wfj_A            8 PHGTLEVVLVSAKGLEDADFLNNMDPYVQLTCRTQDQKSNVAEGMGTTPEWNETFIFTVSEG-----TTELKAKIFDKDV   82 (136)
T ss_dssp             CEEEEEEEEEEEEECSSCCSSCSSCCCEEEESSSCEEECCCCTTCCSSCEEEEEEEEEEESS-----CCEEEEEECCSSS
T ss_pred             CcEEEEEEEEeccCCCCcccCCCcCceEEEEECCccceeEeccCCCCCCccCcEEEEEECCC-----CCEEEEEEEECCC
Confidence            46799999999999999998899999999999998899999764789999999999999753     4789999999966


Q ss_pred             CCCCcccEEEEEeceeeeccCCCCCCCCeeeeeeCCCCCcceEEEEEEEEcccCC
Q 019724           82 CFGNSDLGEVFVPVKEMLLRSNGDDDKPMSYNITTPGGRAKGVLNVSYKFGPSSS  136 (336)
Q Consensus        82 ~~~d~~LG~~~v~L~~l~~~~~~~~~~~~~~~l~~~~g~~~G~L~lsl~~~~~~~  136 (336)
                      ..+|++||+++|+|.+|+....   ....||.|. .+++..|+|+|+|+|.+...
T Consensus        83 ~~~d~~lG~~~i~l~~l~~~~~---~~~~w~~L~-~~~~~~G~i~l~l~~~p~~~  133 (136)
T 1wfj_A           83 GTEDDAVGEATIPLEPVFVEGS---IPPTAYNVV-KDEEYKGEIWVALSFKPSGP  133 (136)
T ss_dssp             CTTTCCSEEEEEESHHHHHHSE---EEEEEEEEE-ETTEEEEEEEEEEEEEECCS
T ss_pred             CCCCceEEEEEEEHHHhccCCC---CCcEEEEee-cCCccCEEEEEEEEEEeCCC
Confidence            6689999999999999965221   123678887 56778999999999987654

>2dmh_A Myoferlin; beta-sandwich, FER-1-like protein 3, muscular dystrophy, cardiomyopathy, membrane fusion, dystrophin, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.89  E-value=2.1e-22  Score=167.22  Aligned_cols=128  Identities=17%  Similarity=0.287  Sum_probs=103.4

Q ss_pred             CccEEEEEEEEecCCCCCCCCCCcceEEEEEEcCcceEEEEeeCCCCCCeeeeEEEEEecchhhhcCCcEEEEEEeecCC
Q 019724            2 GSRALDITVVSASDLKTAGMFSKMNVYAVVTIFGESQTTSVARDCGVRPTWNHQMRFNIDEAAAMQNNLTIVYSIRSTGG   81 (336)
Q Consensus         2 ~~g~L~V~vi~Ak~L~~~d~~g~~dPYv~v~l~~~~~kTkv~~~~t~nP~WnE~f~F~v~~~~~~~~~~~L~v~V~d~d~   81 (336)
                      ..++|+|+|++|++|...+. +++||||+|++...++||+++ ++++||+|||+|.|.+..... +....|+|+|||+|.
T Consensus         5 ~~g~L~v~v~~a~~L~~~~~-g~~dpyv~v~~~~~~~kT~v~-~~t~nP~wne~f~f~v~~~~~-~~~~~l~i~V~d~d~   81 (140)
T 2dmh_A            5 SSGMLRVIVESASNIPKTKF-GKPDPIVSVIFKDEKKKTKKV-DNELNPVWNEILEFDLRGIPL-DFSSSLGIIVKDFET   81 (140)
T ss_dssp             BCCEEEEEEEEEESCCCCSS-SCCCEEEEEECSSCEEECCCC-CSCSSCEEEEEEEEECSSCCC-CTTCEEEEEEEETTC
T ss_pred             CCcEEEEEEEEeeCCCCCCC-CCCCeEEEEEECCEeEEeeee-cCCCCCccCcEEEEEeccccc-CCCCEEEEEEEECCC
Confidence            36799999999999999988 999999999999989999995 457999999999999975421 235789999999976


Q ss_pred             CCCCcccEEEEEeceeeeccCCCCCCCCeeee---eeCCC-CCcceEEEEEEEEcccCC
Q 019724           82 CFGNSDLGEVFVPVKEMLLRSNGDDDKPMSYN---ITTPG-GRAKGVLNVSYKFGPSSS  136 (336)
Q Consensus        82 ~~~d~~LG~~~v~L~~l~~~~~~~~~~~~~~~---l~~~~-g~~~G~L~lsl~~~~~~~  136 (336)
                      ..+|++||+++|+|.+|..  ...  ...|+.   |.+.+ ....|+|+|+|+|.+...
T Consensus        82 ~~~~~~lG~~~i~l~~l~~--~~~--~~~w~~l~~l~~~~~~~~~G~l~l~~~~~p~~~  136 (140)
T 2dmh_A           82 IGQNKLIGTATVALKDLTG--DQS--RSLPYKLISLLNEKGQDTGATIDLVIGYDPPSG  136 (140)
T ss_dssp             SSSCCCCEEEEEEGGGTCS--SSC--EEEEEEEEEEECTTCCEEEEEEEEEEEECCCBS
T ss_pred             CCCCceEEEEEEEHHHhcc--CCC--ceeEEeeeeccCCCCCCCCCEEEEEEEEECCCC
Confidence            6689999999999999876  222  224554   66533 356799999999987443

>3m7f_B E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB10, SH2 domain, phosphoprotein, conjugation pathway, signaling protein-ligase complex; 2.00A {Mus musculus}

Probab=99.87  E-value=8.4e-22  Score=170.41  Aligned_cols=127  Identities=18%  Similarity=0.347  Sum_probs=96.6

Q ss_pred             CccEEEEEEEEecCCCCCCCCCCcceEEEEEEcC------cceEEEEeeCCCCCCeeeeEEEEEecchhhhcCCcEEEEE
Q 019724            2 GSRALDITVVSASDLKTAGMFSKMNVYAVVTIFG------ESQTTSVARDCGVRPTWNHQMRFNIDEAAAMQNNLTIVYS   75 (336)
Q Consensus         2 ~~g~L~V~vi~Ak~L~~~d~~g~~dPYv~v~l~~------~~~kTkv~~~~t~nP~WnE~f~F~v~~~~~~~~~~~L~v~   75 (336)
                      +.++|+|+|++|++|...+.++++||||+|++..      ..+||++++ +++||+|||+|.|.|...     ...|+|+
T Consensus         6 ~~g~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~~kT~v~~-~t~nP~Wne~f~f~v~~~-----~~~L~~~   79 (176)
T 3m7f_B            6 DTRVVRVKVIAGIGLAKKDILGASDPYVRVTLYDPMSGILTSVQTKTIK-KSLNPKWNEEILFRVLPQ-----RHRILFE   79 (176)
T ss_dssp             TCEEEEEEEEEEESCC---CCCCCCEEEEEEEEETTTEEEEEEECCCCS-SCSSCEEEEEEEEEECTT-----TCEEEEE
T ss_pred             CcEEEEEEEEEeeCCCCcCCCCCcCcEEEEEEECCCCCcccceeCceEC-CCCCCcccceEEEEEcCC-----CCEEEEE
Confidence            4689999999999999999899999999999986      347999965 689999999999999754     3689999


Q ss_pred             EeecCCCCCCcccEEEEEeceeeeccCCCCCC--CCeeeeeeC--CCCCcceEEEEEEEEccc
Q 019724           76 IRSTGGCFGNSDLGEVFVPVKEMLLRSNGDDD--KPMSYNITT--PGGRAKGVLNVSYKFGPS  134 (336)
Q Consensus        76 V~d~d~~~~d~~LG~~~v~L~~l~~~~~~~~~--~~~~~~l~~--~~g~~~G~L~lsl~~~~~  134 (336)
                      |||+|...+|+|||+++|+|.+|.......+.  ...||.|..  .+++.+|+|+|+|+|.+.
T Consensus        80 V~d~d~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~l~~~p~  142 (176)
T 3m7f_B           80 VFDENRLTRDDFLGQVDVPLYPLPTENPRMERPYTFKDFVLHPRSHKSRVKGYLRLKMTYLPK  142 (176)
T ss_dssp             EEECC----CEEEEEEEEESCSCCBC------CCCCEEEECBCSSTTCCCCSEEEEEEEECC-
T ss_pred             EEECCCCCCCcEEEEEEEEHHHccccCCcccccccccEEEccccCCCCccCEEEEEEEEEEeC
Confidence            99997766899999999999999873221111  125777764  445678999999999987

>2ep6_A MCTP2 protein; beta sandwich, Ca2+ binding, membrane binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.7.1.1

Probab=99.87  E-value=5.2e-22  Score=163.68  Aligned_cols=119  Identities=19%  Similarity=0.309  Sum_probs=101.1

Q ss_pred             CccEEEEEEEEecCCCCCCCCCCcceEEEEEEcCcceEEEEeeCCCCCCeeeeEEEEEecchhhhcCCcEEEEEEeecCC
Q 019724            2 GSRALDITVVSASDLKTAGMFSKMNVYAVVTIFGESQTTSVARDCGVRPTWNHQMRFNIDEAAAMQNNLTIVYSIRSTGG   81 (336)
Q Consensus         2 ~~g~L~V~vi~Ak~L~~~d~~g~~dPYv~v~l~~~~~kTkv~~~~t~nP~WnE~f~F~v~~~~~~~~~~~L~v~V~d~d~   81 (336)
                      ..++|+|+|++|++|+..+..+++||||+|++.+.++||++++ +++||+|||+|.|.+...     ...|+|+|||+|.
T Consensus        11 ~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~kT~~~~-~t~nP~wne~f~f~~~~~-----~~~l~i~V~d~d~   84 (133)
T 2ep6_A           11 DVGILQVKVLKAADLLAADFSGKSDPFCLLELGNDRLQTHTVY-KNLNPEWNKVFTFPIKDI-----HDVLEVTVFDEDG   84 (133)
T ss_dssp             CSEEEEEEEEEEESCCCSSSSSCCCEEEEEEETTEEEECCCCS-SCSSCCCCEEEEEEESCT-----TCEEEEEEEEEET
T ss_pred             CceEEEEEEEeeECCCCCCCCCCcCeEEEEEECCEEEEeeeec-CCCCCccccEEEEEecCC-----CCEEEEEEEECCC
Confidence            3679999999999999999889999999999999899999965 589999999999999754     3789999999966


Q ss_pred             CCCCcccEEEEEeceeeeccCCCCCCCCeeeeeeCC--CCCcceEEEEEEEEc
Q 019724           82 CFGNSDLGEVFVPVKEMLLRSNGDDDKPMSYNITTP--GGRAKGVLNVSYKFG  132 (336)
Q Consensus        82 ~~~d~~LG~~~v~L~~l~~~~~~~~~~~~~~~l~~~--~g~~~G~L~lsl~~~  132 (336)
                      ..+|++||+++|+|.++.. +     ...|+.|...  +....|+|+|+|+|.
T Consensus        85 ~~~~~~lG~~~i~l~~l~~-~-----~~~w~~L~~~~~~~~~~G~i~l~i~~~  131 (133)
T 2ep6_A           85 DKPPDFLGKVAIPLLSIRD-G-----QPNCYVLKNKDLEQAFKGVIYLEMDLI  131 (133)
T ss_dssp             TEEEEECCBCEEEGGGCCS-S-----CCEECCCBCSCTTSCCSSEEEEEEEEE
T ss_pred             CCCCCeeEEEEEEHHHccC-C-----CceEEEeecCCCCCccceEEEEEEEEE
Confidence            6689999999999999865 1     1256777653  345789999999985

>3b7y_A E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-conjugation pathway, structural genomics consortium, SGC, cytoplasm; 1.80A {Homo sapiens} PDB: 2nsq_A

Probab=99.87  E-value=1.3e-21  Score=165.12  Aligned_cols=125  Identities=18%  Similarity=0.343  Sum_probs=95.0

Q ss_pred             ccEEEEEEEEecCCCCCCCCCCcceEEEEEEcC------cceEEEEeeCCCCCCeeeeEEEEEecchhhhcCCcEEEEEE
Q 019724            3 SRALDITVVSASDLKTAGMFSKMNVYAVVTIFG------ESQTTSVARDCGVRPTWNHQMRFNIDEAAAMQNNLTIVYSI   76 (336)
Q Consensus         3 ~g~L~V~vi~Ak~L~~~d~~g~~dPYv~v~l~~------~~~kTkv~~~~t~nP~WnE~f~F~v~~~~~~~~~~~L~v~V   76 (336)
                      .++|+|+|++|++|...+.++++||||+|++..      ..+||++++ +++||+|||+|.|.+...     ...|+|+|
T Consensus        19 ~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~~kT~v~~-~t~nP~wne~f~f~v~~~-----~~~l~~~V   92 (153)
T 3b7y_A           19 SRIVRVRVIAGIGLAKKDILGASDPYVRVTLYDPMNGVLTSVQTKTIK-KSLNPKWNEEILFRVHPQ-----QHRLLFEV   92 (153)
T ss_dssp             CEEEEEEEEEEESCC-------CCEEEEEEEEETTTEEEEEEECCCCS-SCSSCCCCEEEEEEECTT-----TCEEEEEE
T ss_pred             ccEEEEEEEEeeCCCCCCCCCCCCcEEEEEEECCCCccceeeeCcccc-CCCCCCCCCEEEEEecCC-----CCEEEEEE
Confidence            568999999999999999889999999999984      348999965 589999999999999754     37899999


Q ss_pred             eecCCCCCCcccEEEEEeceeeeccCCCC--CCCCeeeeeeCC--CCCcceEEEEEEEEcc
Q 019724           77 RSTGGCFGNSDLGEVFVPVKEMLLRSNGD--DDKPMSYNITTP--GGRAKGVLNVSYKFGP  133 (336)
Q Consensus        77 ~d~d~~~~d~~LG~~~v~L~~l~~~~~~~--~~~~~~~~l~~~--~g~~~G~L~lsl~~~~  133 (336)
                      ||+|...+|++||+++|+|.+|.......  .....||.|...  ..+..|+|+|+|+|.+
T Consensus        93 ~d~d~~~~d~~iG~~~i~l~~l~~~~~~~~~~~~~~w~~L~~~~~~~~~~G~i~l~l~~~P  153 (153)
T 3b7y_A           93 FDENRLTRDDFLGQVDVPLYPLPTENPRLERPYTFKDFVLHPRSHKSRVKGYLRLKMTYLP  153 (153)
T ss_dssp             EECCSSSCCEEEEEEEEECCSCCBCCTTSCCCCCCEEEECBCSSTTCCCCSEEEEEEEECC
T ss_pred             EECCCCcCCCeeEEEEEEHHHcccCCCcccccccccccccccccCCCCcceEEEEEEEEeC
Confidence            99976668999999999999998732210  012367777643  3467899999999964

>3kwu_A MUNC13-1; calcium binding protein, phospholipid binding protein, metal binding protein; HET: GOL; 1.37A {Rattus norvegicus} SCOP: b.7.1.0 PDB: 3kwt_A*

Probab=99.86  E-value=2.7e-21  Score=162.21  Aligned_cols=120  Identities=17%  Similarity=0.251  Sum_probs=100.5

Q ss_pred             CccEEEEEEEEecCCCCCCCCCCcceEEEEEEcCcceEEEEeeCCCCCCeeeeEEEEEecchhhhcCCcEEEEEEeecCC
Q 019724            2 GSRALDITVVSASDLKTAGMFSKMNVYAVVTIFGESQTTSVARDCGVRPTWNHQMRFNIDEAAAMQNNLTIVYSIRSTGG   81 (336)
Q Consensus         2 ~~g~L~V~vi~Ak~L~~~d~~g~~dPYv~v~l~~~~~kTkv~~~~t~nP~WnE~f~F~v~~~~~~~~~~~L~v~V~d~d~   81 (336)
                      ..++|+|+|++|++|...+.++++||||+|++....+||++++ +++||+|||+|.|.+....     ..|+|+|||+|.
T Consensus        15 ~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~kT~~~~-~t~nP~Wne~f~f~v~~~~-----~~l~~~v~d~d~   88 (148)
T 3kwu_A           15 WSAKISITVVCAQGLQAKDKTGSSDPYVTVQVGKTKKRTKTIY-GNLNPVWEENFHFECHNSS-----DRIKVRVLDEDD   88 (148)
T ss_dssp             CCEEEEEEEEEEESCCCCSTTSCCCEEEEEEETTEEEECCCCC-SCSSCEEEEEEEEEECSTT-----CEEEEEEEECCC
T ss_pred             cccEEEEEEEeeeCCCCCCCCCCcCeEEEEEECCEEEECCccC-CCCCCCcccEEEEEecCCC-----CEEEEEEEECCC
Confidence            4689999999999999999899999999999998889999955 5799999999999997643     689999999966


Q ss_pred             C-----------CCCcccEEEEEeceeeeccCCCCCCCCeeeeeeC--CCCCcceEEEEEEEEcc
Q 019724           82 C-----------FGNSDLGEVFVPVKEMLLRSNGDDDKPMSYNITT--PGGRAKGVLNVSYKFGP  133 (336)
Q Consensus        82 ~-----------~~d~~LG~~~v~L~~l~~~~~~~~~~~~~~~l~~--~~g~~~G~L~lsl~~~~  133 (336)
                      .           ..|++||++.|+|.++..  .    ...|+.|..  ......|+|+|+|+|.-
T Consensus        89 ~~~~~~~~~~~~~~~~~lG~~~i~l~~l~~--~----~~~w~~L~~~~~~~~~~G~i~l~l~~e~  147 (148)
T 3kwu_A           89 DIKSRVKQRFKRESDDFLGQTIIEVRTLSG--E----MDVWYNLDKRTDKSAVSGAIRLHISVEI  147 (148)
T ss_dssp             SHHHHHHTTTSSCSSEEEEEEEEEGGGCCS--E----EEEEEECBCSSTTCCCCCEEEEEEEEEC
T ss_pred             CccccccccccCCCCccEEEEEEEHHHCcC--C----CCEEEEcccCCCCCCCceEEEEEEEEEe
Confidence            4           579999999999999843  1    235677764  33456899999999863

>1gmi_A Protein kinase C, epsilon type; PKC, C2 domain, X-RAY, phospholipids, PKC epsilon.; 1.7A {Rattus rattus} SCOP: b.7.1.1

Probab=99.86  E-value=1e-21  Score=162.72  Aligned_cols=118  Identities=12%  Similarity=0.160  Sum_probs=96.1

Q ss_pred             CccEEEEEEEEecCCCCCCCCCC-----------cceEEEEEEcCcc-eEEEEeeCCCCCCeeeeEEEEEecchhhhcCC
Q 019724            2 GSRALDITVVSASDLKTAGMFSK-----------MNVYAVVTIFGES-QTTSVARDCGVRPTWNHQMRFNIDEAAAMQNN   69 (336)
Q Consensus         2 ~~g~L~V~vi~Ak~L~~~d~~g~-----------~dPYv~v~l~~~~-~kTkv~~~~t~nP~WnE~f~F~v~~~~~~~~~   69 (336)
                      ..++|+|+|++|++|+..+.+++           +||||+|++.... .+|++ +++++||+|||+|.|.+...      
T Consensus         4 ~~g~L~v~v~~a~~L~~~d~~~~~~~g~~~~~~~~DPyv~v~l~~~~~~~T~~-~~~t~nP~WnE~f~f~v~~~------   76 (136)
T 1gmi_A            4 FNGLLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDDSRIGQTAT-KQKTNSPAWHDEFVTDVCNG------   76 (136)
T ss_dssp             EEEEEEEEEEEEESCCCCHHHHCC-CCSSCCCCCCCEEEEEEETTEEEEECCC-CSSCSSCEEEEEEEEEEEEE------
T ss_pred             cceEEEEEEEeCcCCCCcccccccccccccCCcCcCcEEEEEECCeEeeeeeE-ECCCcCCccCCEEEEEecCC------
Confidence            47899999999999998775544           9999999998765 68887 55689999999999998643      


Q ss_pred             cEEEEEEeecCCCCCCcccEEEEEeceeeeccCCCCCCCCeeeeeeCCCCCcceEEEEEEEEcc
Q 019724           70 LTIVYSIRSTGGCFGNSDLGEVFVPVKEMLLRSNGDDDKPMSYNITTPGGRAKGVLNVSYKFGP  133 (336)
Q Consensus        70 ~~L~v~V~d~d~~~~d~~LG~~~v~L~~l~~~~~~~~~~~~~~~l~~~~g~~~G~L~lsl~~~~  133 (336)
                      ..|+|+|||+|...+|++||++.|+|.++......  ....|+.|.     .+|+|+|+|+|..
T Consensus        77 ~~L~~~V~d~d~~~~dd~iG~~~i~l~~l~~~~~~--~~~~w~~L~-----~~G~i~l~l~~~~  133 (136)
T 1gmi_A           77 RKIELAVFHDAPIGYDDFVANCTIQFEELLQNGSR--HFEDWIDLE-----PEGKVYVIIDLSG  133 (136)
T ss_dssp             CEEEEEEEECCSSSSCEEEEEEEEEHHHHTSTTCS--EEEEEEECB-----SSCEEEEEEEEEE
T ss_pred             CEEEEEEEeCCCCCCCCEEEEEEEEHHHhcccCCC--CccEEEEcC-----CCeEEEEEEEEEe
Confidence            68999999997677899999999999998862211  123567764     3799999999965

>2fk9_A Protein kinase C, ETA type; ATP-binding, metal-binding, nucleotide-binding, diacylglycerol binding, serine/threonine-protein kinase, transferase; 1.75A {Homo sapiens}

Probab=99.86  E-value=1.1e-21  Score=166.89  Aligned_cols=118  Identities=14%  Similarity=0.138  Sum_probs=95.8

Q ss_pred             ccEEEEEEEEecCCCCCCCC----------CCcceEEEEEEcCcc-eEEEEeeCCCCCCeeeeEEEEEecchhhhcCCcE
Q 019724            3 SRALDITVVSASDLKTAGMF----------SKMNVYAVVTIFGES-QTTSVARDCGVRPTWNHQMRFNIDEAAAMQNNLT   71 (336)
Q Consensus         3 ~g~L~V~vi~Ak~L~~~d~~----------g~~dPYv~v~l~~~~-~kTkv~~~~t~nP~WnE~f~F~v~~~~~~~~~~~   71 (336)
                      .++|+|+|++|++|...|..          +++||||+|.++... .||++ +++++||+|||+|.|.|...      ..
T Consensus        28 ~g~L~V~VieA~~L~~~D~~~~~~~f~~~~g~sDPYv~v~l~~~~~~kT~v-~~ktlnP~WNE~F~f~v~~~------~~  100 (157)
T 2fk9_A           28 NGYLRVRIGEAVGLQPTRWSLRHSLFKKGHQLLDPYLTVSVDQVRVGQTST-KQKTNKPTYNEEFCANVTDG------GH  100 (157)
T ss_dssp             EEEEEEEEEEEECCCCCHHHHHTTTSSSSCCCCCEEEEEEETTEEEEECCC-CSSCSSCEEEEEEEEEEEEE------CE
T ss_pred             ccEEEEEEEEEECCCCccccccccccccCCCCCCeEEEEEECCEeeEEeee-cCCCCCCccCcEEEEEcCCC------CE
Confidence            67999999999999987732          568999999998876 68998 55689999999999998643      58


Q ss_pred             EEEEEeecCCCCCCcccEEEEEeceeeeccCCCCCCCCeeeeeeCCCCCcceEEEEEEEEc
Q 019724           72 IVYSIRSTGGCFGNSDLGEVFVPVKEMLLRSNGDDDKPMSYNITTPGGRAKGVLNVSYKFG  132 (336)
Q Consensus        72 L~v~V~d~d~~~~d~~LG~~~v~L~~l~~~~~~~~~~~~~~~l~~~~g~~~G~L~lsl~~~  132 (336)
                      |+|+|||+|...+|++||++.|+|.+|............||.|..     .|+|+|+|+|.
T Consensus       101 L~~~V~D~d~~~~dd~iG~~~i~l~~l~~~~~~~~~~~~W~~L~~-----~G~i~l~l~~~  156 (157)
T 2fk9_A          101 LELAVFHETPLGYDHFVANCTLQFQELLRTTGASDTFEGWVDLEP-----EGKVFVVITLT  156 (157)
T ss_dssp             EEEEEEECCSSSSCEEEEEEEEEHHHHHHHHTTCSEEEEEEECBS-----SCEEEEEEEEC
T ss_pred             EEEEEEECCCCCCCCEEEEEEEEHHHhhcccCCCCcccEEEECCC-----CcEEEEEEEEE
Confidence            999999997666899999999999999863101112346788752     79999999985

>2nq3_A Itchy homolog E3 ubiquitin protein ligase; C2 domain, UBL conjugation pathway, structural genomics consortium, SGC; 1.80A {Homo sapiens} SCOP: b.7.1.1

Probab=99.84  E-value=9.7e-21  Score=163.77  Aligned_cols=126  Identities=17%  Similarity=0.171  Sum_probs=99.8

Q ss_pred             ccEEEEEEEEecCCCCCCCCCCcceEEEEEEcCcceEEEEeeCCCCCCeeeeEEEEEecchhhhcCCcEEEEEEeecCCC
Q 019724            3 SRALDITVVSASDLKTAGMFSKMNVYAVVTIFGESQTTSVARDCGVRPTWNHQMRFNIDEAAAMQNNLTIVYSIRSTGGC   82 (336)
Q Consensus         3 ~g~L~V~vi~Ak~L~~~d~~g~~dPYv~v~l~~~~~kTkv~~~~t~nP~WnE~f~F~v~~~~~~~~~~~L~v~V~d~d~~   82 (336)
                      .++|+|+|++|++|...+..+++||||+|++....+||++++ +++||+|||+|.|.+..      ...|+|+|||+|..
T Consensus        35 ~~~L~V~V~~A~~L~~~~~~~~sDPYv~v~~~~~~~kT~v~~-~tlnP~Wne~f~f~v~~------~~~L~~~V~D~d~~  107 (173)
T 2nq3_A           35 KSQLQITVISAKLKENKKNWFGPSPYVEVTVDGQSKKTEKCN-NTNSPKWKQPLTVIVTP------VSKLHFRVWSHQTL  107 (173)
T ss_dssp             CEEEEEEEEEEEECCCC--CCCCCEEEEEEETTEEEECCCCS-SCSSCEEEEEEEEEECT------TCEEEEEEEECCSS
T ss_pred             ceEEEEEEEEeECCCCcccCCCCCeEEEEEECCEEeEccccC-CCCCCeECCEEEEEeCC------CCEEEEEEEECCCC
Confidence            568999999999999444445699999999999889999955 68999999999999853      37899999999766


Q ss_pred             CCCcccEEEEEeceeeeccCCCCCC-CCeeeeeeCC--CCCcceEEEEEEEEcccC
Q 019724           83 FGNSDLGEVFVPVKEMLLRSNGDDD-KPMSYNITTP--GGRAKGVLNVSYKFGPSS  135 (336)
Q Consensus        83 ~~d~~LG~~~v~L~~l~~~~~~~~~-~~~~~~l~~~--~g~~~G~L~lsl~~~~~~  135 (336)
                      .+|++||++.|+|.+|+.......+ ...|+.|.+.  +.+..|+|+|+|++....
T Consensus       108 ~~dd~lG~~~i~l~~l~~~~~~~~~~~~~~~~L~~~~~~~~~~G~L~v~l~~l~~~  163 (173)
T 2nq3_A          108 KSDVLLGTAALDIYETLKSNNMKLEEVVVTLQLGGDKEPTETIGDLSICLDGLQLE  163 (173)
T ss_dssp             SCCEEEEEEEEEHHHHHHHTTTEESSEEEEEEEEESSCTTSEEEEEEEEEESEECC
T ss_pred             CCCceEEEEEEEHHHhcccCCCCcceeEEEEECccCCCCCcccEEEEEEEeeeecc
Confidence            6899999999999999763322211 2357777653  345789999999988764

>3pyc_A E3 ubiquitin-protein ligase smurf1; phospholipid binding, membrane associate, lipid binding PROT; 1.96A {Homo sapiens} PDB: 2jqz_A

Probab=99.84  E-value=1.2e-20  Score=155.24  Aligned_cols=121  Identities=16%  Similarity=0.226  Sum_probs=96.3

Q ss_pred             CccEEEEEEEEecCCCCCCCCCCcceEEEEEEcC--cceEEEEeeCCCCCCeeeeEEEEEecchhhhcCCcEEEEEEeec
Q 019724            2 GSRALDITVVSASDLKTAGMFSKMNVYAVVTIFG--ESQTTSVARDCGVRPTWNHQMRFNIDEAAAMQNNLTIVYSIRST   79 (336)
Q Consensus         2 ~~g~L~V~vi~Ak~L~~~d~~g~~dPYv~v~l~~--~~~kTkv~~~~t~nP~WnE~f~F~v~~~~~~~~~~~L~v~V~d~   79 (336)
                      +..+|+|+|++|++|...+.++++||||+|++..  ..+||+++ ++++||+|||+|.|.+...      ..|+|+|||+
T Consensus         3 ~~~~L~V~v~~a~~L~~~d~~g~sDpyv~v~~~~~~~~~kT~v~-~~t~nP~wne~f~f~v~~~------~~l~~~v~d~   75 (132)
T 3pyc_A            3 EFIKIRLTVLCAKNLAKKDFFRLPDPFAKIVVDGSGQCHSTDTV-KNTLDPKWNQHYDLYVGKT------DSITISVWNH   75 (132)
T ss_dssp             SEEEEEEEEEEEESCCCCSTTCCCCEEEEEEETTTCCEEECCCC-SSCSSCEEEEEEEEEEETT------CCEEEEEEEG
T ss_pred             CeEEEEEEEEEeECCCCCCCCCCcCeEEEEEECCCCceEECCcc-CCCCCCCccCEEEEEeCCC------CEEEEEEEEC
Confidence            4568999999999999999999999999999975  45899995 5689999999999998654      3599999999


Q ss_pred             CCCCC---CcccEEEEEeceeeeccCCCCCCCCeeeeeeCC----CCCcceEEEEEEEEc
Q 019724           80 GGCFG---NSDLGEVFVPVKEMLLRSNGDDDKPMSYNITTP----GGRAKGVLNVSYKFG  132 (336)
Q Consensus        80 d~~~~---d~~LG~~~v~L~~l~~~~~~~~~~~~~~~l~~~----~g~~~G~L~lsl~~~  132 (336)
                      |...+   |++||+++|+|.+|......   ...++.|...    ..+..|+|+|+|+++
T Consensus        76 d~~~~~~~d~~lG~~~i~l~~l~~~~~~---~~~~~~L~~~~~~~~~~~~G~i~v~l~~r  132 (132)
T 3pyc_A           76 KKIHKKQGAGFLGCVRLLSNAISRLKDT---GYQRLDLCKLNPSDTDAVRGQIVVSLQTR  132 (132)
T ss_dssp             GGTTSSTTTTEEEEEEECHHHHHHHTTS---CCEEEECBCSSTTCCCCCCSEEEEEEEEC
T ss_pred             CCCCCCCCCCceEEEEEeHHHhhccccc---CcEEEeeeecCCCCCCceeEEEEEEEEcC
Confidence            65544   89999999999988542221   2355666543    234589999999863

>2cjt_A UNC-13 homolog A, MUNC13-1; phorbol-ester binding, neurotransmitter release, RIM, MUNC13 domains, exocytosis, metal-binding; 1.44A {Rattus norvegicus} SCOP: b.7.1.1

Probab=99.83  E-value=1.7e-20  Score=154.91  Aligned_cols=121  Identities=15%  Similarity=0.267  Sum_probs=86.3

Q ss_pred             CCccEEEEEEEEecCCCCCCCCCCcceEEEEEEcCcceEEEEeeCCCCCCeeeeEEEEEecchhhhcCCcEEEEEEeecC
Q 019724            1 MGSRALDITVVSASDLKTAGMFSKMNVYAVVTIFGESQTTSVARDCGVRPTWNHQMRFNIDEAAAMQNNLTIVYSIRSTG   80 (336)
Q Consensus         1 m~~g~L~V~vi~Ak~L~~~d~~g~~dPYv~v~l~~~~~kTkv~~~~t~nP~WnE~f~F~v~~~~~~~~~~~L~v~V~d~d   80 (336)
                      |+.+.|+|+|++|++|..   .+++||||+|+  ....||++++++++||+|||+|.|.+...     ...|+|+|||+|
T Consensus         2 ~~~~~L~V~V~~A~~l~~---~g~~DPYv~v~--~~~~kt~~~~~~t~nP~WnE~f~f~v~~~-----~~~L~~~V~D~d   71 (131)
T 2cjt_A            2 GVMSLLCVGVKKAKFDGA---QEKFNTYVTLK--VQNVKSTTIAVRGSQPSWEQDFMFEINRL-----DLGLTVEVWNKG   71 (131)
T ss_dssp             CCCEEEEEEEEEEECSSC---GGGCEEEEEEE--ETTEEEECCCEESSSCEEEEEEEEEECCC-----SSEEEEEEEECC
T ss_pred             CcceEEEEEEEEeECCCC---CCCcCeEEEEE--ecCEEEeEecCCCCCceECCEEEEEEeCC-----CCeEEEEEEECC
Confidence            788999999999998853   57899999999  34567777665689999999999999754     357999999996


Q ss_pred             CCCCCcccEEEEEeceeeeccCCCCCC--CCeeeeeeCCCCCcceE-------EEEEEEEc
Q 019724           81 GCFGNSDLGEVFVPVKEMLLRSNGDDD--KPMSYNITTPGGRAKGV-------LNVSYKFG  132 (336)
Q Consensus        81 ~~~~d~~LG~~~v~L~~l~~~~~~~~~--~~~~~~l~~~~g~~~G~-------L~lsl~~~  132 (336)
                       ..+|++||++.|+|.+|.........  ...++.+...+++.+|+       |.+.++|.
T Consensus        72 -~~~dd~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~~g~~~G~~~p~~~~~~~~~~~~  131 (131)
T 2cjt_A           72 -LIWDTMVGTVWIPLRTIRQSNEEGPGEWLTLDSQAIMADSEICGTKDPTFHRILLDAHFE  131 (131)
T ss_dssp             -SSCEEEEEEEEEEGGGSCBCSSCCCCEEEECBC----------CCSCCCCCEEEEEEEEC
T ss_pred             -CCCCCeEEEEEEEHHHhhhcCCCCccccEEcccccccCCCcCcceECCCccEEEEEEEeC
Confidence             66899999999999998763311111  11234444455666666       87877773

>1rlw_A Phospholipase A2, CALB domain; hydrolase, C2 domain; 2.40A {Homo sapiens} SCOP: b.7.1.1

Probab=99.82  E-value=6.1e-20  Score=149.48  Aligned_cols=117  Identities=17%  Similarity=0.298  Sum_probs=92.3

Q ss_pred             CccEEEEEEEEecCCCCC---CCCCCcceEEEEEEcC---cceEEEEeeCCCCCCeeeeEEEEEecchhhhcCCcEEEEE
Q 019724            2 GSRALDITVVSASDLKTA---GMFSKMNVYAVVTIFG---ESQTTSVARDCGVRPTWNHQMRFNIDEAAAMQNNLTIVYS   75 (336)
Q Consensus         2 ~~g~L~V~vi~Ak~L~~~---d~~g~~dPYv~v~l~~---~~~kTkv~~~~t~nP~WnE~f~F~v~~~~~~~~~~~L~v~   75 (336)
                      ..++|+|+|++|++|...   +..+++||||+|++..   ..+||++++ +++||+|||+|.|.+....    ...|+|+
T Consensus         1 S~~~L~v~v~~a~~L~~~~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~-~t~nP~wne~f~f~v~~~~----~~~l~i~   75 (126)
T 1rlw_A            1 SSHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFN-NDINPVWNETFEFILDPNQ----ENVLEIT   75 (126)
T ss_dssp             CCEEEEEEEEEEESCCSCHHHHHHCCCCEEEEEECTTSTTCCEECCCCT-TCSSCEEEEEEEEEECTTS----CCEEEEE
T ss_pred             CCcEEEEEEEeeeCCCCCCccccCCCCCCEEEEEEccCCCceEEccccC-CCCCCcccceEEEEecCCC----CCEEEEE
Confidence            368999999999999973   5668899999999986   458999955 5899999999999995432    4789999


Q ss_pred             EeecCCCCCCcccEEEEEeceeeeccCCCCCCCCeeeeeeCCCCCcceEEEEEEEE
Q 019724           76 IRSTGGCFGNSDLGEVFVPVKEMLLRSNGDDDKPMSYNITTPGGRAKGVLNVSYKF  131 (336)
Q Consensus        76 V~d~d~~~~d~~LG~~~v~L~~l~~~~~~~~~~~~~~~l~~~~g~~~G~L~lsl~~  131 (336)
                      |||+|. ++|++||++.|+|.+|.. +.   ....|+.|..   ...|+|+|+|+.
T Consensus        76 V~d~d~-~~~~~iG~~~i~l~~l~~-~~---~~~~~~~L~~---~~~g~i~~~le~  123 (126)
T 1rlw_A           76 LMDANY-VMDETLGTATFTVSSMKV-GE---KKEVPFIFNQ---VTEMVLEMSLEV  123 (126)
T ss_dssp             EEECCS-SCCEEEEEEEEEGGGSCT-TC---EEEEEEEETT---TEEEEEEEEEEC
T ss_pred             EEECCC-CCCceeEEEEEEHHHccC-CC---cEEEEEEcCC---CceEEEEEEEEe
Confidence            999954 479999999999999875 22   1346788753   445666666553

>2b3r_A Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA containing alpha polypeptide; C2 domain, lipid binding, PI3-kinase, transferase; 2.30A {Mus musculus}

Probab=99.78  E-value=1.6e-18  Score=143.31  Aligned_cols=106  Identities=23%  Similarity=0.282  Sum_probs=86.0

Q ss_pred             ccEEEEEEEEecCCCCCCCCCCcceEEEEEEcC-----cceEEEEeeCCCCCCeeeeEEEEE-ecchhhhcCCcEEEEEE
Q 019724            3 SRALDITVVSASDLKTAGMFSKMNVYAVVTIFG-----ESQTTSVARDCGVRPTWNHQMRFN-IDEAAAMQNNLTIVYSI   76 (336)
Q Consensus         3 ~g~L~V~vi~Ak~L~~~d~~g~~dPYv~v~l~~-----~~~kTkv~~~~t~nP~WnE~f~F~-v~~~~~~~~~~~L~v~V   76 (336)
                      .++|+|+|++|++|.. +..+++||||+|++..     ..+||++++ +++||+|||+|.|. +....+  ....|+|+|
T Consensus        19 ~~~L~V~V~~a~~L~~-~~~g~~DPyv~v~l~~~~~~~~~~kT~v~~-~t~nP~wnE~f~f~~v~~~~l--~~~~L~~~V   94 (134)
T 2b3r_A           19 NGTLFIMVMHIKDLVT-EDGADPNPYVKTYLLPDTHKTSKRKTKISR-KTRNPTFNEMLVYSGYSKETL--RQRELQLSV   94 (134)
T ss_dssp             TTEEEEEEEEEECCCC-TTSCCCCEEEEEEEESCSSSCCCEECCCCC-SCSSCEEEEEEEEESCCHHHH--TTCEEEEEE
T ss_pred             CCEEEEEEEEeeCCCC-CCCCCCCeEEEEEEEcCCCCCceecCCcCc-CCCCCCCccEEEECCcCHHHh--CcCEEEEEE
Confidence            5789999999999996 6788999999999943     348999955 58999999999999 765422  347899999


Q ss_pred             eecCCCCCCcccEEEEEeceeeeccCCCCCCCCeeeeeeC
Q 019724           77 RSTGGCFGNSDLGEVFVPVKEMLLRSNGDDDKPMSYNITT  116 (336)
Q Consensus        77 ~d~d~~~~d~~LG~~~v~L~~l~~~~~~~~~~~~~~~l~~  116 (336)
                      ||+|...+|++||+++|+|.++.. ..   ....||.|..
T Consensus        95 ~d~d~~~~~~~lG~~~i~l~~l~~-~~---~~~~W~~L~~  130 (134)
T 2b3r_A           95 LSAESLRENFFLGGITLPLKDFNL-SK---ETVKWYQLTA  130 (134)
T ss_dssp             EECCSSSCCEEEEEEEEEGGGSCT-TS---CEEEEEECBC
T ss_pred             EECCCCCCCcEEEEEEEEhhhccC-CC---CcceeEECCC
Confidence            999776689999999999999875 22   1346788764

>2cjs_A UNC-13 homolog A, MUNC13-1; neurotransmitter transport, zinc finger, synapto phorbol-ester binding; 1.78A {Rattus norvegicus} SCOP: b.7.1.1

Probab=99.78  E-value=1.7e-18  Score=148.78  Aligned_cols=122  Identities=15%  Similarity=0.254  Sum_probs=90.0

Q ss_pred             ccEEEEEEEEecCCCCCCCCCCcceEEEEEEcCcceEEEEeeCCCCCCeeeeEEEEEecchhhhcCCcEEEEEEeecCCC
Q 019724            3 SRALDITVVSASDLKTAGMFSKMNVYAVVTIFGESQTTSVARDCGVRPTWNHQMRFNIDEAAAMQNNLTIVYSIRSTGGC   82 (336)
Q Consensus         3 ~g~L~V~vi~Ak~L~~~d~~g~~dPYv~v~l~~~~~kTkv~~~~t~nP~WnE~f~F~v~~~~~~~~~~~L~v~V~d~d~~   82 (336)
                      .++|+|+|++|++|.   ..+++||||+|+  ...+||+++++++.||+|||+|.|.+....     ..|+|+|||+| .
T Consensus        13 ~~~L~V~V~~A~~l~---~~g~~DPYV~v~--~~~~kt~~~~~~t~nP~WnE~f~f~v~~~~-----~~L~~~V~D~d-~   81 (167)
T 2cjs_A           13 LSLLCVGVKKAKFDG---AQEKFNTYVTLK--VQNVESTTIAVRGSQPSWEQDFMFEINRLD-----LGLTVEVWNKG-L   81 (167)
T ss_dssp             CCEEEEEEEEEECSS---CGGGCEEEEEEE--ETTEEEECCCEESSSCEEEEEEEEECCCTT-----SEEEEEEEECC-S
T ss_pred             eEEEEEEEEEEECCC---CCCCCCeEEEEE--ecceEEEEecCCCCCCCCCCEEEEEeeCCC-----CEEEEEEEECC-C
Confidence            568999999999884   357899999999  345788876656899999999999997542     67999999996 6


Q ss_pred             CCCcccEEEEEeceeeeccCCCCCCCC--eeeeeeCCCCCcceE-------EEEEEEEcccC
Q 019724           83 FGNSDLGEVFVPVKEMLLRSNGDDDKP--MSYNITTPGGRAKGV-------LNVSYKFGPSS  135 (336)
Q Consensus        83 ~~d~~LG~~~v~L~~l~~~~~~~~~~~--~~~~l~~~~g~~~G~-------L~lsl~~~~~~  135 (336)
                      .+|++||++.|+|.+|..........|  .++.+.+.+++.+|+       |++.++|....
T Consensus        82 ~~dd~iG~~~i~L~~l~~~~~~g~~~~~~~~~~~~~~~g~~~g~~~p~~~~lll~~~~e~~~  143 (167)
T 2cjs_A           82 IWDTMVGTVWIPLRTIRQSNEEGPGEWLTLDSQAIMADSEICGTKDPTFHRILLDAHFELPL  143 (167)
T ss_dssp             SCCEEEEEEEEEGGGSCBCSSCCCCEEEEEEEEEEEETTEEEEEEEEEEEEEEEEEEEECCC
T ss_pred             CCCceEEEEEEEHHHhcccCcCCcccceeeeeeeEcCCCCCCceEccccceEEEEEEeecCC
Confidence            789999999999999876331111111  334544445554554       67777775443

>2z0u_A WW domain-containing protein 1; C2 domain, alternative splicing, coiled coil, cytoplasm, phosphorylation, polymorphism, lipid binding protein; 2.20A {Homo sapiens}

Probab=99.78  E-value=6.1e-19  Score=149.71  Aligned_cols=107  Identities=14%  Similarity=0.132  Sum_probs=88.0

Q ss_pred             ccEEEEEEEEecCCCCCCCCCCcceEEEEEEcC---c---ceEEEEeeCCCCCCeeeeEEEEEecchhhhcCCcEEEEEE
Q 019724            3 SRALDITVVSASDLKTAGMFSKMNVYAVVTIFG---E---SQTTSVARDCGVRPTWNHQMRFNIDEAAAMQNNLTIVYSI   76 (336)
Q Consensus         3 ~g~L~V~vi~Ak~L~~~d~~g~~dPYv~v~l~~---~---~~kTkv~~~~t~nP~WnE~f~F~v~~~~~~~~~~~L~v~V   76 (336)
                      .++|+|+|++|++|..++..+++||||+|++..   .   ++||++++ +++||+|||+|.|.|....+  ....|+|+|
T Consensus        42 ~~~L~V~Vi~a~~L~~~d~~g~sDPyVkv~l~~~~~~~~~~~kT~v~~-~tlnP~wnE~F~f~v~~~~l--~~~~L~~~V  118 (155)
T 2z0u_A           42 NKQFAILIIQLSNLSALLQQQDQKVNIRVAVLPCSESTTCLFRTRPLD-ASDTLVFNEVFWVSMSYPAL--HQKTLRVDV  118 (155)
T ss_dssp             TTEEEEEEEEEECGGGTCCSCCSEEEEEEEEESCSCHHHHEEECCCEE-CCSSEEEEEEEEEECCHHHH--HHCEEEEEE
T ss_pred             CCEEEEEEEEccCcCCcccCCCCCEEEEEEEecCCCCCccceeCCcCC-CCCCCccccEEEEEcCHHHh--CcCEEEEEE
Confidence            578999999999999999999999999999976   3   48999966 57999999999999876432  236899999


Q ss_pred             eecCCCCCCcccEEEEEeceeeeccCCCCCCCCeeeeee
Q 019724           77 RSTGGCFGNSDLGEVFVPVKEMLLRSNGDDDKPMSYNIT  115 (336)
Q Consensus        77 ~d~d~~~~d~~LG~~~v~L~~l~~~~~~~~~~~~~~~l~  115 (336)
                      ||+|+..+|++||++.|+|.+|.....   ....||.|.
T Consensus       119 ~d~d~~~~~d~iG~~~i~l~~l~~~~~---~~~~W~~L~  154 (155)
T 2z0u_A          119 CTTDRSHLEECLGGAQISLAEVCRSGE---RSTRWYNLL  154 (155)
T ss_dssp             EEECTTSCEEEEEEEEEECTTSCTTCC---CEEEEEEEB
T ss_pred             EECCCCCCCcEEEEEEEEHHHccCCCC---ccccceEcc
Confidence            999877789999999999999853112   134677764

>3fbk_A RGS3, RGP3, regulator of G-protein signaling 3; all beta-sheet fold, structural genomics, PSI-2, protein structure initiative; 2.00A {Homo sapiens} SCOP: b.7.1.0

Probab=99.77  E-value=5.9e-19  Score=149.02  Aligned_cols=118  Identities=14%  Similarity=0.174  Sum_probs=90.3

Q ss_pred             CccEEEEEEEEecCCCCCCCCCCcceEEEEEEcC-----cceEEEEeeCCCCCCeeeeEEEEEecchhhhcCCcEEEEEE
Q 019724            2 GSRALDITVVSASDLKTAGMFSKMNVYAVVTIFG-----ESQTTSVARDCGVRPTWNHQMRFNIDEAAAMQNNLTIVYSI   76 (336)
Q Consensus         2 ~~g~L~V~vi~Ak~L~~~d~~g~~dPYv~v~l~~-----~~~kTkv~~~~t~nP~WnE~f~F~v~~~~~~~~~~~L~v~V   76 (336)
                      ..++|+|+|++|++|...+ .+++||||+|++..     ..+||++++ +++||+|||+|.|.+.....   ...|.|+|
T Consensus        25 ~~~~L~V~v~~a~~L~~~d-~g~~Dpyv~v~l~~~~~~~~~~kT~v~~-~t~nP~wne~f~f~v~~~~~---~~~L~i~V   99 (153)
T 3fbk_A           25 QDRVLLLHIIEGKGLISKQ-PGTCDPYVKISLIPEDSRLRHQKTQTVP-DCRDPAFHEHFFFPVQEEDD---QKRLLVTV   99 (153)
T ss_dssp             SSSEEEEEEEEEESCCCCS-SSCCCEEEEEEEESCSCCTTCEECCCCT-TCSSCEEEEEEEEECCGGGT---TSEEEEEE
T ss_pred             CCCEEEEEEEEeeCCCCCC-CCCCCEEEEEEEEcCCCCccEEeccccC-CCCCCccccEEEEecccHHh---CCEEEEEE
Confidence            3678999999999999988 68999999999954     348999954 68999999999999855432   24699999


Q ss_pred             eecCCCCC-CcccEEEEEeceeeeccCCCCCCCCeeeeeeCCCCCcceEEEE
Q 019724           77 RSTGGCFG-NSDLGEVFVPVKEMLLRSNGDDDKPMSYNITTPGGRAKGVLNV  127 (336)
Q Consensus        77 ~d~d~~~~-d~~LG~~~v~L~~l~~~~~~~~~~~~~~~l~~~~g~~~G~L~l  127 (336)
                      ||+|...+ |++||++.|+|.+|.....   ....||.|...+......|.+
T Consensus       100 ~d~d~~~~~d~~lG~~~i~l~~l~~~~~---~~~~W~~L~~~~~g~~~~lkv  148 (153)
T 3fbk_A          100 WNRASQSRQSGLIGCMSFGVKSLLTPDK---EISGWYYLLGEHLGRTKHLKV  148 (153)
T ss_dssp             EECCSSGGGCEEEEEEEEEHHHHTC--C---CEEEEEECBCTTGGGTCCCBC
T ss_pred             EeCCCCCCCCcEEEEEEEEHHHhcCCCC---ccccEEECCChhhccccccee
Confidence            99966555 8999999999999874111   234688887644333344433

>1a25_A CALB, protein kinase C (beta); calcium++/phospholipid binding protein, calcium-binding protein; HET: PSE; 2.70A {Rattus norvegicus} SCOP: b.7.1.2

Probab=99.77  E-value=1.7e-18  Score=145.30  Aligned_cols=105  Identities=18%  Similarity=0.297  Sum_probs=88.0

Q ss_pred             ccEEEEEEEEecCCCCCCCCCCcceEEEEEEcC-----cceEEEEeeCCCCCCeeeeEEEEEecchhhhcCCcEEEEEEe
Q 019724            3 SRALDITVVSASDLKTAGMFSKMNVYAVVTIFG-----ESQTTSVARDCGVRPTWNHQMRFNIDEAAAMQNNLTIVYSIR   77 (336)
Q Consensus         3 ~g~L~V~vi~Ak~L~~~d~~g~~dPYv~v~l~~-----~~~kTkv~~~~t~nP~WnE~f~F~v~~~~~~~~~~~L~v~V~   77 (336)
                      .++|+|+|++|++|...+..+++||||+|++..     ..+||++++ +++||+|||+|.|.+.....   ...|+|+||
T Consensus        30 ~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~v~~-~t~nP~wne~f~f~v~~~~~---~~~L~i~V~  105 (149)
T 1a25_A           30 REVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIK-CSLNPEWNETFRFQLKESDK---DRRLSVEIW  105 (149)
T ss_dssp             SSEEEEEEEEEESCCCCSTTSCCCEEEEEEEESCTTCSSCEECCCCS-SCSSCEEEEEEEEECCSGGG---GCEEEEEEE
T ss_pred             CCEEEEEEEEeeCCCCCCCCCCcCeEEEEEEECCCCCcceEecceeC-CCCCCcCCcEEEEEeccccC---CCEEEEEEE
Confidence            468999999999999999889999999999984     458999965 48999999999999976432   368999999


Q ss_pred             ecCCCCCCcccEEEEEeceeeeccCCCCCCCCeeeeeeC
Q 019724           78 STGGCFGNSDLGEVFVPVKEMLLRSNGDDDKPMSYNITT  116 (336)
Q Consensus        78 d~d~~~~d~~LG~~~v~L~~l~~~~~~~~~~~~~~~l~~  116 (336)
                      |+|...+|++||+++|+|.+|..  ..   ...||.|..
T Consensus       106 d~d~~~~~~~iG~~~i~l~~l~~--~~---~~~W~~L~~  139 (149)
T 1a25_A          106 DWDLTSRNDFMGSLSFGISELQK--AG---VDGWFKLLS  139 (149)
T ss_dssp             ECCSSSCCEEEEEEEEEHHHHTT--CC---EEEEEECBC
T ss_pred             ECCCCCCCCEEEEEEEEHHHhCc--Cc---cCCeEEccC
Confidence            99766689999999999999876  21   346788764

>2bwq_A Regulating synaptic membrane exocytosis protein 2; C2 domain, neurotransmitter release, transport protein; 1.41A {Rattus norvegicus} SCOP: b.7.1.2

Probab=99.77  E-value=2.1e-18  Score=140.87  Aligned_cols=105  Identities=17%  Similarity=0.301  Sum_probs=81.2

Q ss_pred             ccEEEEEEEEecCCCCCCCCCCcceEEEEEEc-----CcceEEEEeeCCCCCCeeeeEEEEEecchhhhcCCcEEEEEEe
Q 019724            3 SRALDITVVSASDLKTAGMFSKMNVYAVVTIF-----GESQTTSVARDCGVRPTWNHQMRFNIDEAAAMQNNLTIVYSIR   77 (336)
Q Consensus         3 ~g~L~V~vi~Ak~L~~~d~~g~~dPYv~v~l~-----~~~~kTkv~~~~t~nP~WnE~f~F~v~~~~~~~~~~~L~v~V~   77 (336)
                      .++|+|+|++|++|...+..+++||||+|++.     ...+||++++ +++||+|||+|.|.+.... +.....|+|+||
T Consensus        17 ~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~~~kT~v~~-~t~nP~wne~f~f~~~~~~-~~~~~~l~~~V~   94 (129)
T 2bwq_A           17 GHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVK-KTLEPKWNQTFIYSPVHRR-EFRERMLEITLW   94 (129)
T ss_dssp             TTEEEEEEEEEESCCCCTTSCCBCEEEEEEEESSCSGGGEEECCCCS-SBSSCEEEEEEEECSCCGG-GGGGCEEEEEEE
T ss_pred             CCEEEEEEEEeeCCCCCCCCCCCCCEEEEEEecCCCCCcceeccccc-CCCCCccccEEEEccCCHH-HhcCCeEEEEEE
Confidence            57899999999999999988999999999994     3448999955 5899999999999953211 112478999999


Q ss_pred             ecCCCCC--CcccEEEEEeceeeeccCCCCCCCCeeeee
Q 019724           78 STGGCFG--NSDLGEVFVPVKEMLLRSNGDDDKPMSYNI  114 (336)
Q Consensus        78 d~d~~~~--d~~LG~~~v~L~~l~~~~~~~~~~~~~~~l  114 (336)
                      |+|...+  |++||++.|+|.++..  ..   ...||.|
T Consensus        95 d~d~~~~~~~~~lG~~~i~l~~l~~--~~---~~~W~~L  128 (129)
T 2bwq_A           95 DQARVREEESEFLGEILIELETALL--DD---EPHWYKL  128 (129)
T ss_dssp             EC-------CEEEEEEEEEGGGCCC--SS---CEEEEEC
T ss_pred             ECCcCcCcCCceeEEEEEEccccCC--Cc---CCccEEC
Confidence            9966655  9999999999999876  22   2356665

>3f04_A Synaptotagmin-1; C2A, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal- binding, palmitate, phosphoprotein; 1.35A {Homo sapiens} SCOP: b.7.1.2 PDB: 3f01_A 3f05_A 3f00_A 1byn_A 2k45_A 2k4a_A 2k8m_A 2ki6_A*

Probab=99.77  E-value=1.5e-18  Score=144.50  Aligned_cols=107  Identities=17%  Similarity=0.234  Sum_probs=87.3

Q ss_pred             CccEEEEEEEEecCCCCCCCCCCcceEEEEEEcC---cceEEEEeeCCCCCCeeeeEEEEEecchhhhcCCcEEEEEEee
Q 019724            2 GSRALDITVVSASDLKTAGMFSKMNVYAVVTIFG---ESQTTSVARDCGVRPTWNHQMRFNIDEAAAMQNNLTIVYSIRS   78 (336)
Q Consensus         2 ~~g~L~V~vi~Ak~L~~~d~~g~~dPYv~v~l~~---~~~kTkv~~~~t~nP~WnE~f~F~v~~~~~~~~~~~L~v~V~d   78 (336)
                      ..++|+|+|++|++|...+..+++||||+|++..   ..+||+++ ++++||+|||+|.|.|....+  ....|+|+|||
T Consensus        32 ~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~kT~v~-~~t~nP~wne~f~f~v~~~~l--~~~~L~i~V~d  108 (143)
T 3f04_A           32 QNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVH-RKTLNPVFNEQFTFKVPYSEL--GGKTLVMAVYD  108 (143)
T ss_dssp             TTTEEEEEEEEEECCCCBGGGBCCCEEEEEEEESCCSCCEECCCC-CSCSSCEEEEEEEECCCHHHH--TTCEEEEEEEE
T ss_pred             CCCEEEEEEEEecCCCCCCCCCCcCcEEEEEEECCCCccEECccC-cCCCCCcCcCeEEEeecHhhc--CCCEEEEEEEe
Confidence            3578999999999999998888999999999953   35899995 457999999999999875432  34789999999


Q ss_pred             cCCCCCCcccEEEEEeceeeeccCCCCCCCCeeeeee
Q 019724           79 TGGCFGNSDLGEVFVPVKEMLLRSNGDDDKPMSYNIT  115 (336)
Q Consensus        79 ~d~~~~d~~LG~~~v~L~~l~~~~~~~~~~~~~~~l~  115 (336)
                      +|...+|++||+++|+|.+|.. ..   ....|+.|.
T Consensus       109 ~d~~~~~~~iG~~~i~l~~l~~-~~---~~~~W~~L~  141 (143)
T 3f04_A          109 FDRFSKHDIIGEFKVPMNTVDF-GH---VTEEWRDLQ  141 (143)
T ss_dssp             CCSSSCCEEEEEEEEEGGGCCT-TS---CEEEEEECB
T ss_pred             CCCCCCCceEEEEEEEHHHccC-CC---CcceEEECc
Confidence            9776689999999999999875 22   133677764

>1rsy_A Synaptotagmin I; calcium/phospholipid binding protein; 1.90A {Rattus norvegicus} SCOP: b.7.1.2

Probab=99.77  E-value=2.7e-18  Score=144.71  Aligned_cols=108  Identities=18%  Similarity=0.251  Sum_probs=88.1

Q ss_pred             CccEEEEEEEEecCCCCCCCCCCcceEEEEEEcC---cceEEEEeeCCCCCCeeeeEEEEEecchhhhcCCcEEEEEEee
Q 019724            2 GSRALDITVVSASDLKTAGMFSKMNVYAVVTIFG---ESQTTSVARDCGVRPTWNHQMRFNIDEAAAMQNNLTIVYSIRS   78 (336)
Q Consensus         2 ~~g~L~V~vi~Ak~L~~~d~~g~~dPYv~v~l~~---~~~kTkv~~~~t~nP~WnE~f~F~v~~~~~~~~~~~L~v~V~d   78 (336)
                      ..++|+|+|++|++|...+..+++||||+|++..   ..+||++++ +++||+|||+|.|.|....+  ....|+|+|||
T Consensus        40 ~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~-~t~nP~wne~f~f~v~~~~l--~~~~L~i~V~d  116 (152)
T 1rsy_A           40 QNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHR-KTLNPVFNEQFTFKVPYSEL--GGKTLVMAVYD  116 (152)
T ss_dssp             TTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEETTCCSCEECCCCT-TCSSCEEEEEEEECCCHHHH--TTCEEEEEEEE
T ss_pred             CCCEEEEEEEEeECCCCccCCCCcCeEEEEEEEcCCCceEeccccC-CCCCCcCcccEEEeecHHHc--CCCEEEEEEEE
Confidence            3578999999999999999889999999999963   358999955 58999999999999865422  34789999999


Q ss_pred             cCCCCCCcccEEEEEeceeeeccCCCCCCCCeeeeeeC
Q 019724           79 TGGCFGNSDLGEVFVPVKEMLLRSNGDDDKPMSYNITT  116 (336)
Q Consensus        79 ~d~~~~d~~LG~~~v~L~~l~~~~~~~~~~~~~~~l~~  116 (336)
                      +|...+|++||++.|+|.++.. +.   ....||.|..
T Consensus       117 ~d~~~~~~~iG~~~i~l~~l~~-~~---~~~~W~~L~~  150 (152)
T 1rsy_A          117 FDRFSKHDIIGEFKVPMNTVDF-GH---VTEEWRDLQS  150 (152)
T ss_dssp             CCSSSCCEEEEEEEEEGGGCCC-SS---CEEEEEECBC
T ss_pred             CCCCCCCcEEEEEEEEchhccC-CC---CcceEEECCC
Confidence            9766689999999999999865 22   1346777753

>2d8k_A Synaptotagmin VII; exocytosis, calcium binding, lysosome, C2 domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.77  E-value=1.8e-18  Score=143.77  Aligned_cols=109  Identities=14%  Similarity=0.234  Sum_probs=87.5

Q ss_pred             CccEEEEEEEEecCCCCCCCCCCcceEEEEEEcC---cceEEEEeeCCCCCCeeeeEEEEEecchhhhcCCcEEEEEEee
Q 019724            2 GSRALDITVVSASDLKTAGMFSKMNVYAVVTIFG---ESQTTSVARDCGVRPTWNHQMRFNIDEAAAMQNNLTIVYSIRS   78 (336)
Q Consensus         2 ~~g~L~V~vi~Ak~L~~~d~~g~~dPYv~v~l~~---~~~kTkv~~~~t~nP~WnE~f~F~v~~~~~~~~~~~L~v~V~d   78 (336)
                      ..++|+|+|++|++|...+..+++||||+|++..   ..+||+++ ++++||+|||+|.|.+.... +.....|+|+|||
T Consensus        24 ~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~-~~t~nP~wne~f~f~~~~~~-~~~~~~l~i~V~d  101 (141)
T 2d8k_A           24 QESTLTVKIMKAQELPAKDFSGTSDPFVKIYLLPDKKHKLETKVK-RKNLNPHWNETFLFEGFPYE-KVVQRILYLQVLD  101 (141)
T ss_dssp             SSCCEEEEEEEEESCCCCSSSSCCCEEEEEEEESCCSSEEECCCC-TTCSSCCCCEEEEECSCCHH-HHTTSEEEEEEEE
T ss_pred             CCCEEEEEEEEeECCCCCCCCCCCCcEEEEEEECCCCccEeCceE-cCCCCCccccEEEECccCHH-HcccCEEEEEEEE
Confidence            3578999999999999999889999999999964   34899995 56899999999999853321 1134789999999


Q ss_pred             cCCCCCCcccEEEEEeceeeeccCCCCCCCCeeeeeeC
Q 019724           79 TGGCFGNSDLGEVFVPVKEMLLRSNGDDDKPMSYNITT  116 (336)
Q Consensus        79 ~d~~~~d~~LG~~~v~L~~l~~~~~~~~~~~~~~~l~~  116 (336)
                      +|...+|++||++.|+|.+|.. ..   ....|+.|..
T Consensus       102 ~d~~~~~~~iG~~~i~l~~l~~-~~---~~~~W~~L~~  135 (141)
T 2d8k_A          102 YDRFSRNDPIGEVSIPLNKVDL-TQ---MQTFWKDLKP  135 (141)
T ss_dssp             CCSSSSCEEEEEEEEETTTSCT-TS---CEEEEECCEE
T ss_pred             CCCCCCCcEEEEEEEEhhhhcC-CC---CccEEEECcC
Confidence            9766689999999999999876 22   1346777764

>1ugk_A Synaptotagmin IV, KIAA1342; beta sandwich, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.7.1.2

Probab=99.77  E-value=2.5e-18  Score=142.36  Aligned_cols=108  Identities=22%  Similarity=0.334  Sum_probs=86.1

Q ss_pred             ccEEEEEEEEecCCCCCCCC-CCcceEEEEEEcC---cceEEEEeeCCCCCCeeeeEEEEE-ecchhhhcCCcEEEEEEe
Q 019724            3 SRALDITVVSASDLKTAGMF-SKMNVYAVVTIFG---ESQTTSVARDCGVRPTWNHQMRFN-IDEAAAMQNNLTIVYSIR   77 (336)
Q Consensus         3 ~g~L~V~vi~Ak~L~~~d~~-g~~dPYv~v~l~~---~~~kTkv~~~~t~nP~WnE~f~F~-v~~~~~~~~~~~L~v~V~   77 (336)
                      .++|+|+|++|++|...+.+ +++||||+|++..   ..+||++++ +++||+|||+|.|. +....+  ....|+|+||
T Consensus        21 ~~~L~v~v~~a~~L~~~d~~~~~~dpyv~v~~~~~~~~~~kT~v~~-~t~nP~wne~f~f~~v~~~~~--~~~~l~i~V~   97 (138)
T 1ugk_A           21 RKAFVVNIKEARGLPAMDEQSMTSDPYIKMTILPEKKHKVKTRVLR-KTLDPAFDETFTFYGIPYTQI--QELALHFTIL   97 (138)
T ss_dssp             GTEEEEEEEEEESCCCCBTTTTBCEEEEEEEEETTTCSEEECCCCS-SCSSCEEEEEEEEECCCSTTG--GGCEEEEEEE
T ss_pred             CCEEEEEEEEeeCCCCCCCCCCCCCCEEEEEEecCCCceEecCcCc-CCCCCcEeeEEEEcCcCHHHh--ccCEEEEEEE
Confidence            57899999999999999985 8999999999975   458999955 68999999999996 654321  2368999999


Q ss_pred             ecCCCCCCcccEEEEEeceeeeccCCCCCCCCeeeeeeC
Q 019724           78 STGGCFGNSDLGEVFVPVKEMLLRSNGDDDKPMSYNITT  116 (336)
Q Consensus        78 d~d~~~~d~~LG~~~v~L~~l~~~~~~~~~~~~~~~l~~  116 (336)
                      |+|...+|++||++.|+|.+|.. ..+.  ...|+.|..
T Consensus        98 d~d~~~~~~~lG~~~i~l~~l~~-~~~~--~~~~~~l~~  133 (138)
T 1ugk_A           98 SFDRFSRDDIIGEVLIPLSGIEL-SEGK--MLMNREIIS  133 (138)
T ss_dssp             EECSSCCCCCCEEEEEECTTCCC-TTCC--EEEEEECBS
T ss_pred             ECCCCCCCcEEEEEEEehhHccC-CCCc--chhhhhhhc
Confidence            99776689999999999999876 2222  234566654

>2dmg_A KIAA1228 protein; beta-sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.77  E-value=3.4e-18  Score=142.17  Aligned_cols=110  Identities=17%  Similarity=0.305  Sum_probs=86.5

Q ss_pred             ccEEEEEEEEecCCCCCCCCCCcceEEEEEEcC-----cceEEEEeeCCCCCCeeeeEEEEEecchhhhcCCcEEEEEEe
Q 019724            3 SRALDITVVSASDLKTAGMFSKMNVYAVVTIFG-----ESQTTSVARDCGVRPTWNHQMRFNIDEAAAMQNNLTIVYSIR   77 (336)
Q Consensus         3 ~g~L~V~vi~Ak~L~~~d~~g~~dPYv~v~l~~-----~~~kTkv~~~~t~nP~WnE~f~F~v~~~~~~~~~~~L~v~V~   77 (336)
                      .++|+|+|++|++|...+..+ +||||+|++..     ..+||++++ +++||+|||+|.|.|....+  ....|+|+||
T Consensus        23 ~~~L~v~v~~a~~L~~~d~~g-~dpyv~v~l~~~~~~~~~~kT~v~~-~t~nP~wne~f~f~v~~~~l--~~~~L~i~V~   98 (142)
T 2dmg_A           23 RNKLIVVVHACRNLIAFSEDG-SDPYVRMYLLPDKRRSGRRKTHVSK-KTLNPVFDQSFDFSVSLPEV--QRRTLDVAVK   98 (142)
T ss_dssp             TTEEEEEEEEEECCCCSSTTC-CCEEEEEEEESCCCSSSCEECCCCC-SCSSCEEEEEEEECCCHHHH--HHCEEEEEEE
T ss_pred             CCEEEEEEEEeECCCCCCCCC-CCeeEEEEEEcCCCCCCcccCCccC-CCCCCCcCceEEEEecHHHh--CcCEEEEEEE
Confidence            578999999999999999888 99999999964     348999955 58999999999999865432  1358999999


Q ss_pred             ecCCCCC--CcccEEEEEeceeeeccCCCCCCCCeeeeeeCCCCC
Q 019724           78 STGGCFG--NSDLGEVFVPVKEMLLRSNGDDDKPMSYNITTPGGR  120 (336)
Q Consensus        78 d~d~~~~--d~~LG~~~v~L~~l~~~~~~~~~~~~~~~l~~~~g~  120 (336)
                      |+|...+  |++||++.|+|.++... . .  ...||.|.....+
T Consensus        99 d~d~~~~~~~~~iG~~~i~l~~~~~~-~-~--~~~W~~L~~~~~~  139 (142)
T 2dmg_A           99 NSGGFLSKDKGLLGKVLVALASEELA-K-G--WTQWYDLTEDSGP  139 (142)
T ss_dssp             ECCCSSCCSCCCCEEEEEECCCSTTT-T-C--BCCBCCCBCSCSC
T ss_pred             ECCCccccCCcEEEEEEEeccccccc-c-c--ccceeeccCCCCC
Confidence            9966543  57999999999998652 2 1  3357777764433

>3fdw_A Synaptotagmin-like protein 4; structural genomics, phospholipid binding, alternative splicing, cell membrane, cytoplasmic vesicle, membrane; 2.20A {Homo sapiens}

Probab=99.76  E-value=2.2e-18  Score=144.54  Aligned_cols=108  Identities=19%  Similarity=0.258  Sum_probs=88.0

Q ss_pred             ccEEEEEEEEecCCCCCC-CCCCcceEEEEEEcC-----cceEEEEeeCCCCCCeeeeEEEEEecchhhhcCCcEEEEEE
Q 019724            3 SRALDITVVSASDLKTAG-MFSKMNVYAVVTIFG-----ESQTTSVARDCGVRPTWNHQMRFNIDEAAAMQNNLTIVYSI   76 (336)
Q Consensus         3 ~g~L~V~vi~Ak~L~~~d-~~g~~dPYv~v~l~~-----~~~kTkv~~~~t~nP~WnE~f~F~v~~~~~~~~~~~L~v~V   76 (336)
                      .++|+|+|++|++|...+ ..+++||||+|++..     ..+||+++ ++++||+|||+|.|.|....+  ....|+|+|
T Consensus        22 ~~~L~V~v~~a~~L~~~d~~~~~~dpyv~v~l~~~~~~~~~~kT~v~-~~t~nP~wne~f~f~v~~~~~--~~~~L~~~V   98 (148)
T 3fdw_A           22 TQSLVVHVKECHQLAYADEAKKRSNPYVKTYLLPDKSRQGKRKTSIK-RDTVNPLYDETLRYEIPESLL--AQRTLQFSV   98 (148)
T ss_dssp             TTEEEEEEEEEESCCCSBTTTTBCCEEEEEEEETCCSGGGEEECCCC-SSCSSCEEEEEEEEECCSTTG--GGCEEEEEE
T ss_pred             CCEEEEEEEEecCCCCcccCCCCCCeEEEEEEEcCCcccCccccccC-CCCCCCcEeeEEEEEeChhHh--CceEEEEEE
Confidence            578999999999999887 578999999999974     24899985 568999999999999876432  236799999


Q ss_pred             eecCCCCCCcccEEEEEeceeeeccCCCCCCCCeeeeeeCC
Q 019724           77 RSTGGCFGNSDLGEVFVPVKEMLLRSNGDDDKPMSYNITTP  117 (336)
Q Consensus        77 ~d~d~~~~d~~LG~~~v~L~~l~~~~~~~~~~~~~~~l~~~  117 (336)
                      ||+|+..+|++||++.|+|.++... ..   ...||.|..+
T Consensus        99 ~d~d~~~~~~~iG~~~i~l~~l~~~-~~---~~~W~~L~~~  135 (148)
T 3fdw_A           99 WHHGRFGRNTFLGEAEIQMDSWKLD-KK---LDHCLPLHGK  135 (148)
T ss_dssp             EEECGGGCEEEEEEEEEEHHHHHHH-CC---SEEEEECBCC
T ss_pred             EECCCCcCCcEEEEEEEEccccccc-CC---ccceEECcCc
Confidence            9997666899999999999998762 21   3467888754

>1v27_A Regulating synaptic membrane exocytosis protein 2; RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.7.1.2

Probab=99.76  E-value=1.2e-18  Score=144.37  Aligned_cols=106  Identities=18%  Similarity=0.324  Sum_probs=86.1

Q ss_pred             ccEEEEEEEEecCCCCCCCCCCcceEEEEEEc-----CcceEEEEeeCCCCCCeeeeEEEEEe-cchhhhcCCcEEEEEE
Q 019724            3 SRALDITVVSASDLKTAGMFSKMNVYAVVTIF-----GESQTTSVARDCGVRPTWNHQMRFNI-DEAAAMQNNLTIVYSI   76 (336)
Q Consensus         3 ~g~L~V~vi~Ak~L~~~d~~g~~dPYv~v~l~-----~~~~kTkv~~~~t~nP~WnE~f~F~v-~~~~~~~~~~~L~v~V   76 (336)
                      .++|+|+|++|++|...+..+++||||+|++.     ...+||++++ +++||+|||+|.|.+ ....  .....|+|+|
T Consensus        20 ~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~~~~-~t~nP~wne~f~f~~~~~~~--~~~~~l~i~V   96 (141)
T 1v27_A           20 GHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVK-KTLEPKWNQTFIYSPVHRRE--FRERMLEITL   96 (141)
T ss_dssp             TTEEEEEEEEEESCCCCSSSCCCCEEEECCCSSCCSSSSCCBCCCCS-SCSSCCCCCCCEECSCCTTG--GGTCEEEEEE
T ss_pred             CCEEEEEEEEccCCCCcCCCCCCCCEEEEEEecCCCCCcceeCcccc-CCCCCccccEEEEccCCHHH--hcCCEEEEEE
Confidence            57899999999999999988999999999984     3458999965 589999999999995 3221  2347899999


Q ss_pred             eecCCCCC--CcccEEEEEeceeeeccCCCCCCCCeeeeeeC
Q 019724           77 RSTGGCFG--NSDLGEVFVPVKEMLLRSNGDDDKPMSYNITT  116 (336)
Q Consensus        77 ~d~d~~~~--d~~LG~~~v~L~~l~~~~~~~~~~~~~~~l~~  116 (336)
                      ||+|....  |++||++.|+|.++..  ..   ...||.|..
T Consensus        97 ~d~d~~~~~~~~~lG~~~i~l~~l~~--~~---~~~W~~L~~  133 (141)
T 1v27_A           97 WDQARVREEESEFLGEILIELETALL--DD---EPHWYKLQT  133 (141)
T ss_dssp             EEBCSSSSCCBCCCEEEEEEGGGCCC--SS---EEEEEECBC
T ss_pred             EECCCCcCCCCceEEEEEEEccccCC--CC---CCceEECcc
Confidence            99966655  8999999999999875  22   246788875

>3l9b_A Otoferlin; C2-domain, beta-sheets, cell membrane, synaptic V hearing, membrane, synapse, transmembrane, membrane protein; 1.95A {Rattus norvegicus}

Probab=99.75  E-value=6.9e-18  Score=139.52  Aligned_cols=119  Identities=17%  Similarity=0.284  Sum_probs=100.7

Q ss_pred             EEEEEEEEecCCCCCCCCCCcceEEEEEEcCcceEEEEeeCCCCCCeeeeEEEEEecchhhhcCCcEEEEEEeecCCCCC
Q 019724            5 ALDITVVSASDLKTAGMFSKMNVYAVVTIFGESQTTSVARDCGVRPTWNHQMRFNIDEAAAMQNNLTIVYSIRSTGGCFG   84 (336)
Q Consensus         5 ~L~V~vi~Ak~L~~~d~~g~~dPYv~v~l~~~~~kTkv~~~~t~nP~WnE~f~F~v~~~~~~~~~~~L~v~V~d~d~~~~   84 (336)
                      .|+|+|.+|++|+     ++.|+|++|++.+.++|||++++++.||+|||+|+|++...  .+....|+|.|+|+++.++
T Consensus        22 sL~V~l~~a~~Lp-----g~~Dp~akv~FRg~k~kTkvi~~~~~npvfnE~F~wpl~~~--ld~~e~L~v~V~d~~~v~~   94 (144)
T 3l9b_A           22 ALIVHLKTVSELR-----GRADRIAKVTFRGQSFYSRVLENCEDVADFDETFRWPVASS--IDRNEVLEIQIFNYSKVFS   94 (144)
T ss_dssp             EEEEEEEEEESCC-----SCEEEEEEEEETTEEEECCCEEEECSCEEEEEEEEEEESSC--CCTTCEEEEEEEEECTTSC
T ss_pred             EEEEEEEEecCCC-----CCCCCeEEEEEeccceeeEEeccCCCCceEcceEEecCCCC--CCCCCEEEEEEEECccccC
Confidence            5899999999998     57999999999999999999876789999999999999763  3567899999999988889


Q ss_pred             CcccEEEEEeceeeeccCCCCCCCCeeeeeeCCCCCc-ceEEEEEEEEccc
Q 019724           85 NSDLGEVFVPVKEMLLRSNGDDDKPMSYNITTPGGRA-KGVLNVSYKFGPS  134 (336)
Q Consensus        85 d~~LG~~~v~L~~l~~~~~~~~~~~~~~~l~~~~g~~-~G~L~lsl~~~~~  134 (336)
                      |++||+++|+|.++...  +.  ..++..|.+.+.+. .++|.|+|+|.+.
T Consensus        95 nrlIG~~~i~Lq~lv~~--~~--l~l~~~LvD~n~~~~~a~I~l~l~Y~pp  141 (144)
T 3l9b_A           95 NKLIGTFRMVLQKVVEE--NR--VEVSDTLIDDNNAIIKTSLSMEVRYQAA  141 (144)
T ss_dssp             CEEEEEEEEESHHHHHH--SE--EEEEEEEECTTSCEEEEEEEEEEEEEET
T ss_pred             CCEEEEEEEEhHHhccC--Ce--EEEeecccCCCCCccccEEEEEEEecCC
Confidence            99999999999999872  22  33566777755554 5789999999764

>2chd_A Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium binding, synaptic EXOC metal-binding, protein transport, synapse, transport, zinc-; 1.92A {Rattus norvegicus} PDB: 2k3h_A

Probab=99.75  E-value=5.9e-18  Score=140.72  Aligned_cols=95  Identities=20%  Similarity=0.291  Sum_probs=81.2

Q ss_pred             ccEEEEEEEEecCCCCCCCCCCcceEEEEEEcC-----cceEEEEeeCCCCCCeeeeEEEEE-ecchhhhcCCcEEEEEE
Q 019724            3 SRALDITVVSASDLKTAGMFSKMNVYAVVTIFG-----ESQTTSVARDCGVRPTWNHQMRFN-IDEAAAMQNNLTIVYSI   76 (336)
Q Consensus         3 ~g~L~V~vi~Ak~L~~~d~~g~~dPYv~v~l~~-----~~~kTkv~~~~t~nP~WnE~f~F~-v~~~~~~~~~~~L~v~V   76 (336)
                      .++|+|+|++|++|...+..+++||||+|++..     ..+||++++ +++||+|||+|.|. +....+  ....|+|+|
T Consensus        28 ~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~v~~-~t~nP~wne~f~f~~~~~~~~--~~~~l~i~V  104 (142)
T 2chd_A           28 NSNLQCTIIRAKGLKPMDSNGLADPYVKLHLLPGASKSNKLRTKTLR-NTRNPVWNETLQYHGITEEDM--QRKTLRISV  104 (142)
T ss_dssp             GTEEEEEEEEEESCCCCCTTSCCCEEEEEEEESCCSGGGEEECCCCC-SCSSCEEEEEEEEESCCHHHH--HHCEEEEEE
T ss_pred             CCEEEEEEEEecCCCCCCCCCCCCCEEEEEEEcCCCCcceeeCCcCC-CCCCCcCcCEEEEcccCHHHc--cCCEEEEEE
Confidence            578999999999999999889999999999986     458999965 58999999999999 644321  126899999


Q ss_pred             eecCCCCCCcccEEEEEeceeeec
Q 019724           77 RSTGGCFGNSDLGEVFVPVKEMLL  100 (336)
Q Consensus        77 ~d~d~~~~d~~LG~~~v~L~~l~~  100 (336)
                      ||+|...+|++||++.|+|.+|..
T Consensus       105 ~d~d~~~~d~~iG~~~i~l~~l~~  128 (142)
T 2chd_A          105 CDEDKFGHNEFIGETRFSLKKLKA  128 (142)
T ss_dssp             EEECTTSCEEEEEEEEEEGGGCCT
T ss_pred             EECCCCCCCcEEEEEEEEHHHcCC
Confidence            999766688999999999999876

>1rh8_A Piccolo protein; beta-sandwich, metal binding protein; NMR {Rattus norvegicus} SCOP: b.7.1.2

Probab=99.75  E-value=1.3e-18  Score=144.50  Aligned_cols=108  Identities=17%  Similarity=0.239  Sum_probs=88.0

Q ss_pred             ccEEEEEEEEecCCCCCCCCCCcceEEEEEEcCc--------------ceEEEEeeCCCCCCeeeeEEEEE-ecchhhhc
Q 019724            3 SRALDITVVSASDLKTAGMFSKMNVYAVVTIFGE--------------SQTTSVARDCGVRPTWNHQMRFN-IDEAAAMQ   67 (336)
Q Consensus         3 ~g~L~V~vi~Ak~L~~~d~~g~~dPYv~v~l~~~--------------~~kTkv~~~~t~nP~WnE~f~F~-v~~~~~~~   67 (336)
                      .++|+|+|++|++|...+..+++||||+|++...              .+||++++ +++||+|||+|.|. +....+  
T Consensus        17 ~~~L~V~v~~a~~L~~~d~~g~~Dpyv~v~~~~~~~~~~~~~~~~~~~~~kT~v~~-~t~nP~wne~f~f~~v~~~~l--   93 (142)
T 1rh8_A           17 LGNLIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQ-KSLNPEWNQTVIYKSISMEQL--   93 (142)
T ss_dssp             TTEEEEEEEEEESCCCCSSSSCSCCEEEEEETTSSCCCEECCCCCHHHHTTTTTTH-HHHSCEEEEEEEECSCCHHHH--
T ss_pred             CCEEEEEEEEecCCCCCCCCCCCCceEEEEEecCCCcccccccccccceeeccccC-CCCCCCCCCEEEECCcCHHHc--
Confidence            4689999999999999998999999999999873              37888865 48999999999997 654321  


Q ss_pred             CCcEEEEEEeecCCCCCCcccEEEEEeceeeeccCCCCCCCCeeeeeeCC
Q 019724           68 NNLTIVYSIRSTGGCFGNSDLGEVFVPVKEMLLRSNGDDDKPMSYNITTP  117 (336)
Q Consensus        68 ~~~~L~v~V~d~d~~~~d~~LG~~~v~L~~l~~~~~~~~~~~~~~~l~~~  117 (336)
                      ....|+|+|||+|...+|++||+++|+|.++.. ...   ...||.|...
T Consensus        94 ~~~~l~i~V~d~d~~~~~~~lG~~~i~l~~l~~-~~~---~~~W~~L~~~  139 (142)
T 1rh8_A           94 MKKTLEVTVWDYDRFSSNDFLGEVLIDLSSTSH-LDN---TPRWYPLKEQ  139 (142)
T ss_dssp             TTCEEEEEEEEECSSSCEEEEEEEEEETTSCGG-GTT---CCEEEECBCC
T ss_pred             cCCEEEEEEEECCCCCCCceEEEEEEecccccc-CCC---CCeEEECCcc
Confidence            347899999999766689999999999999875 221   3478888753

>2q3x_A Regulating synaptic membrane exocytosis protein 1; C2 domain dimer, neurotransmitter release, transport protein; HET: MSE; 1.73A {Rattus norvegicus}

Probab=99.75  E-value=4.3e-18  Score=146.52  Aligned_cols=105  Identities=18%  Similarity=0.217  Sum_probs=85.8

Q ss_pred             ccEEEEEEEEecCCCCCCC-CCCcceEEEEEEcCc-----ceEEEEeeCCCCCCeeeeEEEEEecchhhhcCCcEEEEEE
Q 019724            3 SRALDITVVSASDLKTAGM-FSKMNVYAVVTIFGE-----SQTTSVARDCGVRPTWNHQMRFNIDEAAAMQNNLTIVYSI   76 (336)
Q Consensus         3 ~g~L~V~vi~Ak~L~~~d~-~g~~dPYv~v~l~~~-----~~kTkv~~~~t~nP~WnE~f~F~v~~~~~~~~~~~L~v~V   76 (336)
                      .++|+|+|++|++|...+. .+++||||+|++...     .+||++++ +++||+|||+|.|.+...     ...|+|+|
T Consensus        29 ~~~L~V~v~~a~~L~~~d~~~g~~DPyv~v~l~~~~~~~~~~kT~v~~-~t~nP~wne~f~f~v~~~-----~~~L~~~V  102 (171)
T 2q3x_A           29 KGQLEVEVIRARSLTQKPGSKSTPAPYVKVYLLENGACIAKKKTRIAR-KTLDPLYQQSLVFDESPQ-----GKVLQVIV  102 (171)
T ss_dssp             TTEEEEEEEEEESCCCCC---CCCEEEEEEEEEETTEEEEEEECCCCC-SCSSCEEEEEEECSSCCT-----TEEEEEEE
T ss_pred             CCEEEEEEEEeeCCCCCCcCCCCCCceEEEEEECCCccccceeCccCC-CCCCCCCCcEEEEEecCC-----CCEEEEEE
Confidence            5789999999999999885 689999999998753     48899854 589999999999998543     37899999


Q ss_pred             e-ecCCCCCCcccEEEEEeceeeeccCCCCCCCCeeeeeeCC
Q 019724           77 R-STGGCFGNSDLGEVFVPVKEMLLRSNGDDDKPMSYNITTP  117 (336)
Q Consensus        77 ~-d~d~~~~d~~LG~~~v~L~~l~~~~~~~~~~~~~~~l~~~  117 (336)
                      | |+|...+|++||++.|+|.++.. ..   ....||.|...
T Consensus       103 ~~d~d~~~~d~~iG~~~i~l~~l~~-~~---~~~~W~~L~~~  140 (171)
T 2q3x_A          103 WGDYGRMDHKCFMGVAQILLEELDL-SS---MVIGWYKLFPP  140 (171)
T ss_dssp             EEECSTTCSSEEEEEEEECGGGSCT-TS---CEEEEEECBCG
T ss_pred             EEcCCCCCCCCEEEEEEEEHHHccc-CC---CcceeEECCCc
Confidence            9 99766689999999999999875 22   13468888753

>2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2

Probab=99.74  E-value=2.3e-17  Score=152.39  Aligned_cols=125  Identities=18%  Similarity=0.260  Sum_probs=100.6

Q ss_pred             CccEEEEEEEEecCCCCCCCCCCcceEEEEEEcCc---ceEEEEeeCCCCCCeeeeEEEEEecchhhhcCCcEEEEEEee
Q 019724            2 GSRALDITVVSASDLKTAGMFSKMNVYAVVTIFGE---SQTTSVARDCGVRPTWNHQMRFNIDEAAAMQNNLTIVYSIRS   78 (336)
Q Consensus         2 ~~g~L~V~vi~Ak~L~~~d~~g~~dPYv~v~l~~~---~~kTkv~~~~t~nP~WnE~f~F~v~~~~~~~~~~~L~v~V~d   78 (336)
                      ..++|+|+|++|++|...+..+++||||+|++...   .+||++++ +++||+|||+|.|.+....  .....|+|+|||
T Consensus        17 ~~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~~T~~~~-~~~nP~wne~f~f~v~~~~--~~~~~l~~~V~d   93 (284)
T 2r83_A           17 QNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHR-KTLNPVFNEQFTFKVPYSE--LAGKTLVMAVYD   93 (284)
T ss_dssp             TTTEEEEEEEEEECCCCCSSSSSCCEEEEEEEETCTTSCEECCCCC-SCSSCEEEEEEEECCCGGG--CTTCEEEEEEEE
T ss_pred             CCCEEEEEEEEeeCCCCCCCCCCCCeEEEEEEEcCCCceEeCCccc-CCCCCeeCceEEEEechHH--hCcCEEEEEEEE
Confidence            35789999999999999998899999999999753   48999855 5799999999999986542  234789999999


Q ss_pred             cCCCCCCcccEEEEEeceeeeccCCCCCCCCeeeeeeCCC---CCcceEEEEEEEEcc
Q 019724           79 TGGCFGNSDLGEVFVPVKEMLLRSNGDDDKPMSYNITTPG---GRAKGVLNVSYKFGP  133 (336)
Q Consensus        79 ~d~~~~d~~LG~~~v~L~~l~~~~~~~~~~~~~~~l~~~~---g~~~G~L~lsl~~~~  133 (336)
                      +|...+|++||++.|+|.++.. ..   ....|+.|....   ....|+|+|++++.+
T Consensus        94 ~d~~~~~~~lG~~~i~l~~l~~-~~---~~~~w~~L~~~~~~~~~~~G~i~l~l~~~p  147 (284)
T 2r83_A           94 FDRFSKHDIIGEFKVPMNTVDF-GH---VTEEWRDLQSAEKEEQEKLGDICFSLRYVP  147 (284)
T ss_dssp             CCSSSCCCEEEEEEEEGGGCCC-SS---CEEEEEECBCCSSCCCCCCCEEEEEEEEET
T ss_pred             CCCCCCCceeEEEEEcchhccc-CC---cceeEEEeeccccccccccccEEEEEEecC
Confidence            9766689999999999999876 22   133577776532   346799999998864

>1w15_A Synaptotagmin IV; metal binding protein, endocytosis/exocytosis neurotransmitter release, transmembrane; 1.93A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1w16_A

Probab=99.74  E-value=1e-17  Score=141.12  Aligned_cols=92  Identities=15%  Similarity=0.319  Sum_probs=73.4

Q ss_pred             ccEEEEEEEEecCCCCCCCCCCcceEEEEEEcCc-----ceEEEEeeCCCCCCeeeeEEEEEecchhhhcCCcEEEEEEe
Q 019724            3 SRALDITVVSASDLKTAGMFSKMNVYAVVTIFGE-----SQTTSVARDCGVRPTWNHQMRFNIDEAAAMQNNLTIVYSIR   77 (336)
Q Consensus         3 ~g~L~V~vi~Ak~L~~~d~~g~~dPYv~v~l~~~-----~~kTkv~~~~t~nP~WnE~f~F~v~~~~~~~~~~~L~v~V~   77 (336)
                      .++|+|+|++|++|...+..+++||||+|++...     ++||++++ +++||+|||+|.|.|....+  ....|+|+||
T Consensus        29 ~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~v~~-~t~nP~wne~f~f~v~~~~l--~~~~l~v~V~  105 (153)
T 1w15_A           29 TNTLTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKK-CTPNAVFNELFVFDIPCESL--EEISVEFLVL  105 (153)
T ss_dssp             TTEEEEEEEEEESCC------CCCEEEEEEEEETTEEEEEEECCCCC-SCSSEEEEEEEEEECCSSSS--TTEEEEEEEE
T ss_pred             CCEEEEEEEEeECCCCcCCCCCCCeEEEEEEEeCCeEeceEecCccc-CCCCCeecceEEEECCHHHh--CceEEEEEEE
Confidence            5789999999999999998899999999999542     37999855 58999999999999876432  2468999999


Q ss_pred             ecCCCCCCcccEEEEEecee
Q 019724           78 STGGCFGNSDLGEVFVPVKE   97 (336)
Q Consensus        78 d~d~~~~d~~LG~~~v~L~~   97 (336)
                      |+|...+|++||++.|+|.+
T Consensus       106 d~d~~~~~~~lG~~~i~l~~  125 (153)
T 1w15_A          106 DSERGSRNEVIGRLVLGATA  125 (153)
T ss_dssp             ECCTTSCCEEEEEEEESTTC
T ss_pred             eCCCCCCCcEEEEEEECCCC
Confidence            99766689999999999987

>3n5a_A Synaptotagmin-7; calcium/phospholipid binding protein, protein transport; 1.44A {Mus musculus}

Probab=99.74  E-value=1.5e-17  Score=137.19  Aligned_cols=94  Identities=16%  Similarity=0.298  Sum_probs=80.4

Q ss_pred             ccEEEEEEEEecCCCCCCCCCCcceEEEEEEcCc-----ceEEEEeeCCCCCCeeeeEEEEEecchhhhcCCcEEEEEEe
Q 019724            3 SRALDITVVSASDLKTAGMFSKMNVYAVVTIFGE-----SQTTSVARDCGVRPTWNHQMRFNIDEAAAMQNNLTIVYSIR   77 (336)
Q Consensus         3 ~g~L~V~vi~Ak~L~~~d~~g~~dPYv~v~l~~~-----~~kTkv~~~~t~nP~WnE~f~F~v~~~~~~~~~~~L~v~V~   77 (336)
                      .++|+|+|++|++|...+..+++||||+|++...     .+||++++ ++.||+|||+|.|.+....+  ....|+|+||
T Consensus        15 ~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~~~~-~t~nP~wne~f~f~v~~~~l--~~~~l~~~V~   91 (138)
T 3n5a_A           15 ANSIIVNIIKARNLKAMDIGGTSDPYVKVWLMYKDKRVEKKKTVTKK-RNLNPIFNESFAFDIPTEKL--RETTIIITVM   91 (138)
T ss_dssp             TTEEEEEEEEEESCCCCBTTTBCCEEEEEEEEETTEEEEEEECCCCS-SCSSCEEEEEEEEECCGGGG--GGEEEEEEEE
T ss_pred             CCeEEEEEEEeeCCCCcCCCCCcCeEEEEEEEeCCCccceEeCcccc-CCCCCcCcceEEEECChhhc--CceEEEEEEE
Confidence            5789999999999999998899999999999753     48888854 57999999999999876532  2368999999


Q ss_pred             ecCCCCCCcccEEEEEeceeee
Q 019724           78 STGGCFGNSDLGEVFVPVKEML   99 (336)
Q Consensus        78 d~d~~~~d~~LG~~~v~L~~l~   99 (336)
                      |+|...+|++||++.|+|.++.
T Consensus        92 d~~~~~~~~~lG~~~i~l~~~~  113 (138)
T 3n5a_A           92 DKDKLSRNDVIGKIYLSWKSGP  113 (138)
T ss_dssp             ECCSSSCCEEEEEEEESSSSCH
T ss_pred             ECCCCCCCcEEEEEEEccccCC
Confidence            9976668999999999998754

>2cm5_A Rabphilin-3A; protein transport, zinc-finger, Ca2+ binding, metal-binding, synaptic exocytosis, C2A-C2B linker fragment, C2B, zinc, synapse; 1.28A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 2cm6_A 3rpb_A

Probab=99.74  E-value=2.2e-17  Score=141.08  Aligned_cols=94  Identities=10%  Similarity=0.125  Sum_probs=81.1

Q ss_pred             ccEEEEEEEEecCCCCCCCCCCcceEEEEEEcC-----cceEEEEeeCCCCCCeeeeEEEEEecchhhhcCCcEEEEEEe
Q 019724            3 SRALDITVVSASDLKTAGMFSKMNVYAVVTIFG-----ESQTTSVARDCGVRPTWNHQMRFNIDEAAAMQNNLTIVYSIR   77 (336)
Q Consensus         3 ~g~L~V~vi~Ak~L~~~d~~g~~dPYv~v~l~~-----~~~kTkv~~~~t~nP~WnE~f~F~v~~~~~~~~~~~L~v~V~   77 (336)
                      .++|+|+|++|++|...+.++++||||+|++..     ..+||+++ ++++||+|||+|.|.+....+  ....|+|+||
T Consensus        36 ~~~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~kT~v~-~~t~nP~wne~f~f~v~~~~l--~~~~L~i~V~  112 (166)
T 2cm5_A           36 QGGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIK-KKTLNPEFNEEFFYDIKHSDL--AKKSLDISVW  112 (166)
T ss_dssp             TTEEEEEEEEEESCCCCSTTSCCCEEEEEEEETC---CCEEECCCC-CSCSSCEEEEEEEEECCGGGG--GGCEEEEEEE
T ss_pred             CCEEEEEEEEeECCCCccCCCCCCcEEEEEEECCCCccceEeCCcc-cCCCCCcccceEEEEcchHhc--CCCEEEEEEE
Confidence            578999999999999999889999999999986     35899995 468999999999999965432  2468999999


Q ss_pred             ecCCCCCCcccEEEEEeceeee
Q 019724           78 STGGCFGNSDLGEVFVPVKEML   99 (336)
Q Consensus        78 d~d~~~~d~~LG~~~v~L~~l~   99 (336)
                      |+|...+|++||++.|+|.++.
T Consensus       113 d~d~~~~~~~iG~~~i~l~~~~  134 (166)
T 2cm5_A          113 DYDIGKSNDYIGGCQLGISAKG  134 (166)
T ss_dssp             ECCSSSCCEEEEEEEEETTCCH
T ss_pred             ECCCCCCCcEEEeEEEecccCC
Confidence            9976668999999999998864

>1tjx_A Similar to synaptotagmini/P65; C2B domain, calcium binding, endocytosis-EX complex; HET: GOL; 1.04A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1tjm_A* 1uov_A 1uow_A 1k5w_A 2lha_A*

Probab=99.73  E-value=1.8e-17  Score=140.64  Aligned_cols=94  Identities=16%  Similarity=0.305  Sum_probs=79.5

Q ss_pred             CccEEEEEEEEecCCCCCCCCCCcceEEEEEEcCc-----ceEEEEeeCCCCCCeeeeEEEEEecchhhhcCCcEEEEEE
Q 019724            2 GSRALDITVVSASDLKTAGMFSKMNVYAVVTIFGE-----SQTTSVARDCGVRPTWNHQMRFNIDEAAAMQNNLTIVYSI   76 (336)
Q Consensus         2 ~~g~L~V~vi~Ak~L~~~d~~g~~dPYv~v~l~~~-----~~kTkv~~~~t~nP~WnE~f~F~v~~~~~~~~~~~L~v~V   76 (336)
                      ..++|+|+|++|++|...+..+++||||+|++...     .+||+++ ++++||+|||+|.|.|....+  ....|+|+|
T Consensus        23 ~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~~kT~v~-~~t~nP~wne~f~f~v~~~~l--~~~~l~i~V   99 (159)
T 1tjx_A           23 TAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIK-KNTLNPYYNESFSFEVPFEQI--QKVQVVVTV   99 (159)
T ss_dssp             TTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEEETTEEEEEEECCCC-CSCSSCEEEEEEEEECCGGGG--GGCEEEEEE
T ss_pred             CCCEEEEEEEEeeCCCCccCCCCCCeEEEEEEEeCCceeceeeCcee-cCCCCCcccceEEEEcCHHHh--CCcEEEEEE
Confidence            35789999999999999998899999999999742     4789985 458999999999999865432  236799999


Q ss_pred             eecCCCCCCcccEEEEEeceee
Q 019724           77 RSTGGCFGNSDLGEVFVPVKEM   98 (336)
Q Consensus        77 ~d~d~~~~d~~LG~~~v~L~~l   98 (336)
                      ||+|...+|++||++.|+|.++
T Consensus       100 ~d~d~~~~~~~iG~~~i~l~~~  121 (159)
T 1tjx_A          100 LDYDKIGKNDAIGKVFVGYNST  121 (159)
T ss_dssp             EECCSSSCCEEEEEEEEETTCC
T ss_pred             EECCCCCCCceEEEEEECCCCC
Confidence            9997766899999999999853

>2enp_A B/K protein; C2 type 1,beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.73  E-value=1.1e-17  Score=140.06  Aligned_cols=108  Identities=19%  Similarity=0.250  Sum_probs=84.4

Q ss_pred             CccEEEEEEEEecCCCCC-C------CCCCcceEEEEEEcC---cceEEEEeeCCCCCCeeeeEEEEEecchhhhcCCcE
Q 019724            2 GSRALDITVVSASDLKTA-G------MFSKMNVYAVVTIFG---ESQTTSVARDCGVRPTWNHQMRFNIDEAAAMQNNLT   71 (336)
Q Consensus         2 ~~g~L~V~vi~Ak~L~~~-d------~~g~~dPYv~v~l~~---~~~kTkv~~~~t~nP~WnE~f~F~v~~~~~~~~~~~   71 (336)
                      ..++|+|+|++|++|... +      ..+++||||+|++..   ..+||+++ ++++||+|||+|.|.|....+  ....
T Consensus        24 ~~~~L~V~v~~a~~L~~~~d~~g~~~~~~~~dpyv~v~l~~~~~~~~kT~v~-~~t~nP~wne~f~f~v~~~~l--~~~~  100 (147)
T 2enp_A           24 LHNHLTVRVIEARDLPPPISHDGSRQDMAHSNPYVKICLLPDQKNSKQTGVK-RKTQKPVFEERYTFEIPFLEA--QRRT  100 (147)
T ss_dssp             TTTEEEEEEEEEECCCCSCSSCCSSCTTCCCCCEEEEEEETCCSSCEECCCC-CSCSSCCCCBCCEECCCHHHH--HHSE
T ss_pred             CCCEEEEEEEEEeCCCCccccccccccCCCCCcEEEEEEEeCCCcceEeecc-cCCCCCeEeeeEEEEeChHHh--ccCE
Confidence            357899999999999874 3      346899999999974   34899995 468999999999999875432  1358


Q ss_pred             EEEEEeecCCCCCCcccEEEEEeceeeeccCCCCCCCCeeeeeeC
Q 019724           72 IVYSIRSTGGCFGNSDLGEVFVPVKEMLLRSNGDDDKPMSYNITT  116 (336)
Q Consensus        72 L~v~V~d~d~~~~d~~LG~~~v~L~~l~~~~~~~~~~~~~~~l~~  116 (336)
                      |+|+|||+|...+|++||++.|+|.+|... . .  ...|+.|..
T Consensus       101 L~~~V~d~d~~~~~~~iG~~~i~l~~l~~~-~-~--~~~w~~L~~  141 (147)
T 2enp_A          101 LLLTVVDFDKFSRHCVIGKVSVPLCEVDLV-K-G--GHWWKALIP  141 (147)
T ss_dssp             EEEEEECCSTTCCSCCCEEEEEETTTSCTT-T-C--CCEEECCBC
T ss_pred             EEEEEEECCCCcCCcEEEEEEEechhcCCC-C-C--ccEEEEeec
Confidence            999999997766899999999999998652 2 1  234666654

>1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A

Probab=99.73  E-value=3.4e-17  Score=152.76  Aligned_cols=126  Identities=20%  Similarity=0.286  Sum_probs=96.4

Q ss_pred             CccEEEEEEEEecCCCCCCCCCCcceEEEEEEc---CcceEEEEeeCCCCCCeeeeEEEEEecchhhhcCCcEEEEEEee
Q 019724            2 GSRALDITVVSASDLKTAGMFSKMNVYAVVTIF---GESQTTSVARDCGVRPTWNHQMRFNIDEAAAMQNNLTIVYSIRS   78 (336)
Q Consensus         2 ~~g~L~V~vi~Ak~L~~~d~~g~~dPYv~v~l~---~~~~kTkv~~~~t~nP~WnE~f~F~v~~~~~~~~~~~L~v~V~d   78 (336)
                      ..++|+|+|++|++|...+..+++||||+|++.   ...+||+++ ++++||+|||+|.|.+....+  ....|+|+|||
T Consensus        18 ~~~~L~v~v~~a~~L~~~d~~g~~dPyv~v~l~~~~~~~~kT~v~-~~t~nP~wne~f~f~v~~~~l--~~~~L~~~V~d   94 (296)
T 1dqv_A           18 GSDQLVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVH-RKTLNPIFNETFQFSVPLAEL--AQRKLHFSVYD   94 (296)
T ss_dssp             SSCEEEEEEEEEECCCCCSTTSCCCEEEEEECTTSTTSCEECCCC-CSCSSCEEEEEEEEECCGGGG--SSCCCEEEEEE
T ss_pred             CCCEEEEEEEEeECCCCcCCCCCcCeEEEEEEEcCCCeeEeCCcc-CCCCCCcEeeEEEEEecHHHh--cCCEEEEEEEE
Confidence            357899999999999999999999999999994   345899995 458999999999999865432  23589999999


Q ss_pred             cCCCCCCcccEEEEEe-ceeeeccCCCCCCCCeeeeeeC--CCCCcceEEEEEEEEcc
Q 019724           79 TGGCFGNSDLGEVFVP-VKEMLLRSNGDDDKPMSYNITT--PGGRAKGVLNVSYKFGP  133 (336)
Q Consensus        79 ~d~~~~d~~LG~~~v~-L~~l~~~~~~~~~~~~~~~l~~--~~g~~~G~L~lsl~~~~  133 (336)
                      +|+..+|++||++.|+ |.++..... .  ...|+.|..  ......|+|+|++.+.+
T Consensus        95 ~d~~~~~~~iG~~~i~~l~~~~~~~~-~--~~~w~~L~~~~~~~~~~G~i~vsl~y~~  149 (296)
T 1dqv_A           95 FDRFSRHDLIGQVVLDNLLELAEQPP-D--RPLWRDILEGGSEKADLGELNFSLCYLP  149 (296)
T ss_dssp             CCSSSCCCEEEEEECCCTTGGGSSCS-S--CCCCEECBCCSSCCSCCCEEEEEEEEET
T ss_pred             cCCCCCCceEEEEEeccccccccCCc-c--ceeeeccccccccccccceEEEEEEecc
Confidence            9777789999999995 545443111 1  224556543  23445799999988754

>1wfm_A Synaptotagmin XIII; C2 domain, exocytosis, neurotransmitter release, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: b.7.1.2

Probab=99.73  E-value=2.6e-17  Score=136.57  Aligned_cols=104  Identities=13%  Similarity=0.161  Sum_probs=83.5

Q ss_pred             ccEEEEEEEEecCCCCCCCCCCcceEEEEEEcCc----ceEEEEeeCCCCCCeeeeEEEEEecchhhhcCCcEEEEEEee
Q 019724            3 SRALDITVVSASDLKTAGMFSKMNVYAVVTIFGE----SQTTSVARDCGVRPTWNHQMRFNIDEAAAMQNNLTIVYSIRS   78 (336)
Q Consensus         3 ~g~L~V~vi~Ak~L~~~d~~g~~dPYv~v~l~~~----~~kTkv~~~~t~nP~WnE~f~F~v~~~~~~~~~~~L~v~V~d   78 (336)
                      .++|+|+|++|++   .+..+++||||+|++...    .+||+++ ++++||+|||+|.|.|....+  ....|+|+|||
T Consensus        25 ~~~L~V~v~~a~~---~d~~g~sDPyv~v~l~~~~~~~~~kT~v~-~~tlnP~wnE~f~f~v~~~~l--~~~~L~~~V~d   98 (138)
T 1wfm_A           25 KAELFVTRLEAVT---SNHDGGCDCYVQGSVANRTGSVEAQTALK-KRQLHTTWEEGLVLPLAEEEL--PTATLTLTLRT   98 (138)
T ss_dssp             TTEEEEEEEEEEC---CCCSSCCCEEEEEEEEETTEEEEEECCCC-CCCSSEECSSCEEEECCTTSS--TTCEEEEEEEE
T ss_pred             CCEEEEEEEEEEc---CCCCCCcceEEEEEEEcCCCcccEecccC-cCCCCCcCCceEEEEecHHHc--CCCEEEEEEEE
Confidence            5789999999994   567789999999999532    3889985 568999999999999865432  24689999999


Q ss_pred             cCCCCCCcccEEEEEeceeeeccCCCCCCCCeeeeeeC
Q 019724           79 TGGCFGNSDLGEVFVPVKEMLLRSNGDDDKPMSYNITT  116 (336)
Q Consensus        79 ~d~~~~d~~LG~~~v~L~~l~~~~~~~~~~~~~~~l~~  116 (336)
                      +|+..+|++||++.|+|.++.. ..   ....|+.|..
T Consensus        99 ~d~~~~dd~lG~~~i~l~~l~~-~~---~~~~W~~L~~  132 (138)
T 1wfm_A           99 CDRFSRHSVAGELRLGLDGTSV-PL---GAAQWGELKT  132 (138)
T ss_dssp             CCSSCTTSCSEEEEEESSSSSS-CT---TCCEEEECCC
T ss_pred             CCCCCCCcEEEEEEEEcccccC-cc---cccceeeCcC
Confidence            9777789999999999999864 12   2346788875

>3jzy_A Intersectin 2; C2 domain, structural genomics consortium (SGC), endocytosis; 1.56A {Homo sapiens} PDB: 3qbv_B* 1ki1_B

Probab=99.70  E-value=4.6e-17  Score=162.38  Aligned_cols=122  Identities=18%  Similarity=0.250  Sum_probs=99.4

Q ss_pred             ccEEEEEEEEecCCCCCCCCCCcceEEEEEEcCcceEEEEeeCCCCCCeeeeEEEEEecchhhhcCCcEEEEEEeecCCC
Q 019724            3 SRALDITVVSASDLKTAGMFSKMNVYAVVTIFGESQTTSVARDCGVRPTWNHQMRFNIDEAAAMQNNLTIVYSIRSTGGC   82 (336)
Q Consensus         3 ~g~L~V~vi~Ak~L~~~d~~g~~dPYv~v~l~~~~~kTkv~~~~t~nP~WnE~f~F~v~~~~~~~~~~~L~v~V~d~d~~   82 (336)
                      .++|+|+|++|++|+..+.++++||||+|++....+||++++ +++||+|||+|.|.+....    ...|+|+|||+|..
T Consensus       386 ~~~l~v~v~~a~~L~~~d~~~~sdpyv~v~~~~~~~~T~~~~-~t~nP~w~e~f~f~~~~~~----~~~l~~~v~d~d~~  460 (510)
T 3jzy_A          386 IGRLMVHVIEATELKACKPNGKSNPYCEISMGSQSYTTRTIQ-DTLNPKWNFNCQFFIKDLY----QDVLCLTLFDRDQF  460 (510)
T ss_dssp             CEEEEEEEEEEESCCCCSTTSCCCEEEEEEETTEEEECCCCS-SCSSCEEEEEEEEEESCTT----TCEEEEEEEECCSS
T ss_pred             CceEEEEeceeecCCCCCCCCCCCeEEEEEECCeeccCCccC-CCCCCccCceEEEEecCCC----CCEEEEEEEeCCCC
Confidence            468999999999999999999999999999998889999955 5799999999999996553    36899999999776


Q ss_pred             CCCcccEEEEEeceeeeccCCCCCCCCeeeeeeCCCCCcceEEEEEEEEc
Q 019724           83 FGNSDLGEVFVPVKEMLLRSNGDDDKPMSYNITTPGGRAKGVLNVSYKFG  132 (336)
Q Consensus        83 ~~d~~LG~~~v~L~~l~~~~~~~~~~~~~~~l~~~~g~~~G~L~lsl~~~  132 (336)
                      .+|++||+++|+|.+|............|+.+.   +...|+|+|++++.
T Consensus       461 ~~~d~lG~~~~~l~~l~~~~~~~~~~~~~~~l~---~~~~G~i~l~~~l~  507 (510)
T 3jzy_A          461 SPDDFLGRTEIPVAKIRTEQESKGPMTRRLLLH---EVPTGEVWVRFDLQ  507 (510)
T ss_dssp             SSCCEEEEEEEEHHHHHHHHHHHCSCCEEEECB---SSSSCEEEEEEEEE
T ss_pred             CCCCceEEEEEEHHHhccccCCCCceeeeecCC---CCCCceEEEEEEEE
Confidence            789999999999999876221111133566665   34679999988874

>1djx_A PLC-D1, phosphoinositide-specific phospholipase C, isozyme delta1; phosphoric diester hydrolase, hydrolase, lipid degradation, transducer; HET: I3P; 2.30A {Rattus norvegicus} SCOP: a.39.1.7 b.7.1.1 c.1.18.1 PDB: 1djg_A 1dji_A 1djh_A* 1djw_A* 1djy_A* 1djz_A* 2isd_A 1qas_A 1qat_A

Probab=99.68  E-value=4.7e-16  Score=158.89  Aligned_cols=119  Identities=17%  Similarity=0.304  Sum_probs=99.1

Q ss_pred             ccEEEEEEEEecCCCCCCC--CCCcceEEEEEEcC-----cceEEEEeeCCCCCCeeeeEEEEEecchhhhcCCcEEEEE
Q 019724            3 SRALDITVVSASDLKTAGM--FSKMNVYAVVTIFG-----ESQTTSVARDCGVRPTWNHQMRFNIDEAAAMQNNLTIVYS   75 (336)
Q Consensus         3 ~g~L~V~vi~Ak~L~~~d~--~g~~dPYv~v~l~~-----~~~kTkv~~~~t~nP~WnE~f~F~v~~~~~~~~~~~L~v~   75 (336)
                      .++|+|+|++|++|...+.  .+++||||+|.+.+     .++||++++++++||+|||+|.|.|....+    ..|+|+
T Consensus       496 ~~~L~V~Vi~A~~L~~~d~~~~~~~DPYV~V~l~g~~~d~~~~kTkvi~~ng~NP~WnE~f~F~v~~~el----~~L~~~  571 (624)
T 1djx_A          496 PERLRVRIISGQQLPKVNKNKNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWDMEFEFEVTVPDL----ALVRFM  571 (624)
T ss_dssp             CEEEEEEEEEEESCCCCSSCSSSCCCEEEEEEEESSGGGCEEEECCCCTTCSSSCEEEEEEEEEESCGGG----CEEEEE
T ss_pred             ceEEEEEEEEcCCCCcccccccCCCCcEEEEEEecCCCCcceeecccccCCCCCCccCceEEEEEecCCC----CEEEEE
Confidence            4689999999999998873  68899999999965     348999977666999999999999976542    689999


Q ss_pred             EeecCCCCCCcccEEEEEeceeeeccCCCCCCCCeeeeeeCCCCCc--ceEEEEEEEEc
Q 019724           76 IRSTGGCFGNSDLGEVFVPVKEMLLRSNGDDDKPMSYNITTPGGRA--KGVLNVSYKFG  132 (336)
Q Consensus        76 V~d~d~~~~d~~LG~~~v~L~~l~~~~~~~~~~~~~~~l~~~~g~~--~G~L~lsl~~~  132 (336)
                      |||+|...+|++||++.|+|.+|..       ...++.|.+..++.  .++|.|+|++.
T Consensus       572 V~D~D~~~~dd~iG~~~ipl~~L~~-------G~r~v~L~d~~g~~~~~~~L~v~i~~~  623 (624)
T 1djx_A          572 VEDYDSSSKNDFIGQSTIPWNSLKQ-------GYRHVHLLSKNGDQHPSATLFVKISIQ  623 (624)
T ss_dssp             EEECCSSSCCEEEEEEEEEGGGBCC-------EEEEEEEECTTSCEEEEEEEEEEEEEE
T ss_pred             EEEcCCCCCCceeEEEEEEHHHcCC-------CcEEEeCCCCCcCCCCceEEEEEEEEE
Confidence            9999777789999999999999875       23578888766664  57888888875

>3nsj_A Perforin-1; pore forming protein, immune system; HET: NAG; 2.75A {Mus musculus}

Probab=99.67  E-value=2.7e-16  Score=157.76  Aligned_cols=115  Identities=15%  Similarity=0.144  Sum_probs=93.5

Q ss_pred             ccEEEEEEEEecCCCCCCCCCCcceEEEEEEcCcceEEEEeeCCCCCCeeeeEEEEEecchhhhcCCcEEEEEEeecCCC
Q 019724            3 SRALDITVVSASDLKTAGMFSKMNVYAVVTIFGESQTTSVARDCGVRPTWNHQMRFNIDEAAAMQNNLTIVYSIRSTGGC   82 (336)
Q Consensus         3 ~g~L~V~vi~Ak~L~~~d~~g~~dPYv~v~l~~~~~kTkv~~~~t~nP~WnE~f~F~v~~~~~~~~~~~L~v~V~d~d~~   82 (336)
                      .++|+|+|++|++|.. |.++++||||+|++.+.++||+|++ +++||+|||+|.|.+....   ....|+|+|||+|..
T Consensus       393 ~~~L~V~V~~A~~L~~-D~~g~sDPYV~v~l~~~~~kTkvik-~tlNP~Wne~f~f~~~~~~---~~~~L~~~V~D~D~~  467 (540)
T 3nsj_A          393 LAHLVVSNFRAEHLWG-DYTTATDAYLKVFFGGQEFRTGVVW-NNNNPRWTDKMDFENVLLS---TGGPLRVQVWDADYG  467 (540)
T ss_dssp             EEEEEEEEEEEESCCC-SSCSCCCEEEEEEETTEEEECCCBC-SCSSCBCCCCEEEEEEETT---TCCCEEEEEEECCSS
T ss_pred             ccEEEEEEEEccCCCc-ccCCCcCeEEEEEECCEeeeeeeec-CCCCCCCCeEEEEEEecCC---CCCEEEEEEEECCCC
Confidence            3689999999999998 9999999999999998889999965 5799999999999865321   247899999999777


Q ss_pred             CCCcccEEEEEeceeeeccCCCCCCCCeeeeeeCCCCCcceEEEEEEEEcccCC
Q 019724           83 FGNSDLGEVFVPVKEMLLRSNGDDDKPMSYNITTPGGRAKGVLNVSYKFGPSSS  136 (336)
Q Consensus        83 ~~d~~LG~~~v~L~~l~~~~~~~~~~~~~~~l~~~~g~~~G~L~lsl~~~~~~~  136 (336)
                      .+||+||++.++|..-    .    .+.|+.|.      .|+|++++++.-...
T Consensus       468 ~~dD~LG~~~~~L~~g----~----~~~~~~l~------~G~l~~~~~~~c~p~  507 (540)
T 3nsj_A          468 WDDDLLGSCDRSPHSG----F----HEVTCELN------HGRVKFSYHAKCLPH  507 (540)
T ss_dssp             SCCEEEEEEEECCCSE----E----EEEEEECS------SSEEEEEEEEEECTT
T ss_pred             CCCCEEEEEEEEeeCC----c----EEEEEEcC------CeEEEEEEEEEECCC
Confidence            7899999999998731    1    22455543      589999999875543

>2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2

Probab=99.58  E-value=1e-14  Score=134.52  Aligned_cols=93  Identities=16%  Similarity=0.314  Sum_probs=78.5

Q ss_pred             ccEEEEEEEEecCCCCCCCCCCcceEEEEEEcC-----cceEEEEeeCCCCCCeeeeEEEEEecchhhhcCCcEEEEEEe
Q 019724            3 SRALDITVVSASDLKTAGMFSKMNVYAVVTIFG-----ESQTTSVARDCGVRPTWNHQMRFNIDEAAAMQNNLTIVYSIR   77 (336)
Q Consensus         3 ~g~L~V~vi~Ak~L~~~d~~g~~dPYv~v~l~~-----~~~kTkv~~~~t~nP~WnE~f~F~v~~~~~~~~~~~L~v~V~   77 (336)
                      .+.|+|+|++|++|...+.++++||||+|++..     ..+||+++ ++++||+|||+|.|.+....+  ....|+|+||
T Consensus       149 ~~~l~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~~~kT~v~-~~t~nP~wne~f~f~v~~~~l--~~~~l~i~V~  225 (284)
T 2r83_A          149 AGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIK-KNTLNPYYNESFSFEVPFEQI--QKVQVVVTVL  225 (284)
T ss_dssp             TTEEEEEEEEEESCCCCSTTSCCCEEEEEEEEETTEEEEEEECCCC-CSCSSCEEEEEEEEECCTTTG--GGEEEEEEEE
T ss_pred             CCceEEEEEEeECCCCcCCCCCcCeEEEEEEEeCCcEeeeecccee-cCCCCCEEceeEEEeCCHHHh--CceEEEEEEE
Confidence            568999999999999999889999999999863     23788884 568999999999999865432  1357999999


Q ss_pred             ecCCCCCCcccEEEEEeceee
Q 019724           78 STGGCFGNSDLGEVFVPVKEM   98 (336)
Q Consensus        78 d~d~~~~d~~LG~~~v~L~~l   98 (336)
                      |+|...+|++||++.|+|..+
T Consensus       226 d~d~~~~~~~iG~~~i~l~~~  246 (284)
T 2r83_A          226 DYDKIGKNDAIGKVFVGYNST  246 (284)
T ss_dssp             ECCSSSCCCEEEEEEEETTCC
T ss_pred             eCCCCCCCcEEEEEEECCCCC
Confidence            997767899999999999764

>1cjy_A CPLA2, protein (cytosolic phospholipase A2); lipid-binding, hydrolase; HET: MES; 2.50A {Homo sapiens} SCOP: b.7.1.1 c.19.1.2 PDB: 1bci_A

Probab=99.53  E-value=1.6e-14  Score=149.32  Aligned_cols=104  Identities=16%  Similarity=0.313  Sum_probs=86.7

Q ss_pred             ccEEEEEEEEecCCCC---CCCCCCcceEEEEEEcC---cceEEEEeeCCCCCCeeeeEEEEEecchhhhcCCcEEEEEE
Q 019724            3 SRALDITVVSASDLKT---AGMFSKMNVYAVVTIFG---ESQTTSVARDCGVRPTWNHQMRFNIDEAAAMQNNLTIVYSI   76 (336)
Q Consensus         3 ~g~L~V~vi~Ak~L~~---~d~~g~~dPYv~v~l~~---~~~kTkv~~~~t~nP~WnE~f~F~v~~~~~~~~~~~L~v~V   76 (336)
                      .++|+|+|++|++|+.   .+..+++||||+|++..   .++||+|++ +++||+|||+|.|.|....    ...|+|+|
T Consensus        17 ~g~L~V~Vi~A~nL~~~~~~D~~g~sDPYV~V~l~~~~~~k~kTkvik-~tlNPvWNEtF~F~v~~~~----~~~L~~~V   91 (749)
T 1cjy_A           17 SHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFN-NDINPVWNETFEFILDPNQ----ENVLEITL   91 (749)
T ss_dssp             CEEEEEEEEEEECCCSCHHHHHHCCCCEEEEEECTTSTTCCEECCCCT-TCSSCEEEEEEEEEECTTS----CCBCEEEE
T ss_pred             ccEEEEEEEEEECCCCccccCCCCCcCeEEEEEEecCCCCeEecceEc-CCCCCeeeeEEEEEecCCC----CCEEEEEE
Confidence            5799999999999998   77788999999999985   458999965 5899999999999997642    46899999


Q ss_pred             eecCCCCCCcccEEEEEeceeeeccCCCCCCCCeeeeeeC
Q 019724           77 RSTGGCFGNSDLGEVFVPVKEMLLRSNGDDDKPMSYNITT  116 (336)
Q Consensus        77 ~d~d~~~~d~~LG~~~v~L~~l~~~~~~~~~~~~~~~l~~  116 (336)
                      ||+|... |++||++.|+|.+|.. +..   ...|+.|..
T Consensus        92 ~D~D~~~-ddfIG~v~I~L~~L~~-g~~---~~~w~~L~~  126 (749)
T 1cjy_A           92 MDANYVM-DETLGTATFTVSSMKV-GEK---KEVPFIFNQ  126 (749)
T ss_dssp             EECCSSS-CEEEEEECCBSTTSCT-TCC---CCEEEEETT
T ss_pred             EECCCCC-CceeEEEEEEHHHcCC-CCc---eEEEEecCC
Confidence            9997766 9999999999999865 221   346778753

>1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A

Probab=99.49  E-value=1e-14  Score=135.94  Aligned_cols=94  Identities=18%  Similarity=0.281  Sum_probs=79.8

Q ss_pred             ccEEEEEEEEecCCCCCCCCCCcceEEEEEEcC-----cceEEEEeeCCCCCCeeeeEEEEEecchhhhcCCcEEEEEEe
Q 019724            3 SRALDITVVSASDLKTAGMFSKMNVYAVVTIFG-----ESQTTSVARDCGVRPTWNHQMRFNIDEAAAMQNNLTIVYSIR   77 (336)
Q Consensus         3 ~g~L~V~vi~Ak~L~~~d~~g~~dPYv~v~l~~-----~~~kTkv~~~~t~nP~WnE~f~F~v~~~~~~~~~~~L~v~V~   77 (336)
                      .+.|+|+|++|++|...+..+++||||+|++..     .++||+++ ++++||+|||+|.|.|....+  ....|+|+||
T Consensus       151 ~~~l~v~v~~a~~L~~~d~~g~~Dpyv~v~l~~~~~~~~~~kT~v~-~~t~nP~wne~f~f~v~~~~l--~~~~L~i~V~  227 (296)
T 1dqv_A          151 AGLLTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIK-KNTLNPTYNEALVFDVAPESV--ENVGLSIAVV  227 (296)
T ss_dssp             TTEEEEEEEEEESCCCCSSSSCCCEEEEECCCTTCCTTSCEECCCC-CSCSSCEEEECCCCCCCSGGG--GSCCCCCEEE
T ss_pred             cceeEEEEEEeecCCccCCCCCCCcEEEEEEEeCCcCccceeccee-cCCCCCeECceEEEEcCHHHc--cCcEEEEEEE
Confidence            578999999999999999899999999999962     34899985 468999999999999876533  2357999999


Q ss_pred             ecCCCCCCcccEEEEEeceeee
Q 019724           78 STGGCFGNSDLGEVFVPVKEML   99 (336)
Q Consensus        78 d~d~~~~d~~LG~~~v~L~~l~   99 (336)
                      |+|...+|++||+++|+|.++.
T Consensus       228 d~d~~~~~~~iG~~~i~l~~~~  249 (296)
T 1dqv_A          228 DYDCIGHNEVIGVCRVGPEAAD  249 (296)
T ss_dssp             ECCSSSCCEEEEECCCSSCTTC
T ss_pred             eCCCCCCCceEEEEEECCccCC
Confidence            9977668999999999998764

>3bxj_A RAS GTPase-activating protein syngap; GTPase activation, membrane, phosphoprotein, SH3-binding, signaling protein; 3.00A {Rattus norvegicus}

Probab=99.49  E-value=2.2e-15  Score=149.79  Aligned_cols=118  Identities=15%  Similarity=0.149  Sum_probs=18.5

Q ss_pred             ccEEEEEEEEecCCCCCCCCCCcceEEEEEEcCcc-eEEEEeeCCC---CCCeeeeEEEEEecchhhhcCCcEEEEEEee
Q 019724            3 SRALDITVVSASDLKTAGMFSKMNVYAVVTIFGES-QTTSVARDCG---VRPTWNHQMRFNIDEAAAMQNNLTIVYSIRS   78 (336)
Q Consensus         3 ~g~L~V~vi~Ak~L~~~d~~g~~dPYv~v~l~~~~-~kTkv~~~~t---~nP~WnE~f~F~v~~~~~~~~~~~L~v~V~d   78 (336)
                      .++|+|+|++|++|..++     ||||++++.+.. .||++++ ++   +||+|||+|.|.+...     ...|+|+|||
T Consensus        10 ~~~L~V~VieAk~L~~~d-----dpYv~v~l~~~~~~kT~v~~-kt~~glnP~WnE~F~f~~~~~-----~~~L~v~V~d   78 (483)
T 3bxj_A           10 DNVLKLWIIEARELPPKK-----RYYCELCLDDMLYARTTSKP-RSASGDTVFWGEHFEFNNLPA-----VRALRLHLYR   78 (483)
T ss_dssp             EECC---------------------------------------------------CCEECC-------------------
T ss_pred             ccEEEEEEEEcCCcCCCC-----CCeEEEEECCeEEeeeeEEe-CCCCCCCCccccEEEEecCCC-----ccEEEEEEEe
Confidence            367999999999998775     999999998764 7899854 46   9999999999987433     2689999999


Q ss_pred             c-C---CCCCCcccEEEEEeceeeeccCCCCCCCCeeeeeeCCC------------------------CCcceEEEEEEE
Q 019724           79 T-G---GCFGNSDLGEVFVPVKEMLLRSNGDDDKPMSYNITTPG------------------------GRAKGVLNVSYK  130 (336)
Q Consensus        79 ~-d---~~~~d~~LG~~~v~L~~l~~~~~~~~~~~~~~~l~~~~------------------------g~~~G~L~lsl~  130 (336)
                      + |   +..+|++||++.|+|.++.. +. .  ...||.|...+                        ....|+|+|+++
T Consensus        79 ~~d~~~~~~~d~~lG~v~i~l~~l~~-~~-~--~~~W~~L~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~G~lrL~v~  154 (483)
T 3bxj_A           79 DSDKKRKKDKAGYVGLVTVPVATLAG-RH-F--TEQWYPVTLPTGSGGSGGMGSGGGGGSGGGSGGKGKGGCPAVRLKAR  154 (483)
T ss_dssp             ------------------------------C--CEECC--------------------------------------CEEE
T ss_pred             cCCccccCCCCceEEEEEEEHHHhcC-CC-C--CCeEEECCCCCCccccccccccccccccccccccCCCCCceEEEEEE
Confidence            4 3   24589999999999999876 22 1  23566764321                        134699999999


Q ss_pred             EcccC
Q 019724          131 FGPSS  135 (336)
Q Consensus       131 ~~~~~  135 (336)
                      |....
T Consensus       155 ~~~~~  159 (483)
T 3bxj_A          155 YQTMS  159 (483)
T ss_dssp             EEECC
T ss_pred             eeeee
Confidence            97654

>3ohm_B 1-phosphatidylinositol-4,5-bisphosphate phosphodi beta-3; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Homo sapiens}

Probab=99.45  E-value=3.4e-13  Score=141.61  Aligned_cols=112  Identities=17%  Similarity=0.276  Sum_probs=90.8

Q ss_pred             cEEEEEEEEecCCCCCCCCCCcceEEEEEEcC------cceEEEEeeCCCCCCeeee-EEEEE-ecchhhhcCCcEEEEE
Q 019724            4 RALDITVVSASDLKTAGMFSKMNVYAVVTIFG------ESQTTSVARDCGVRPTWNH-QMRFN-IDEAAAMQNNLTIVYS   75 (336)
Q Consensus         4 g~L~V~vi~Ak~L~~~d~~g~~dPYv~v~l~~------~~~kTkv~~~~t~nP~WnE-~f~F~-v~~~~~~~~~~~L~v~   75 (336)
                      .+|+|+|++|++|...    +.||||+|.|.+      .++||+|++++++||+||| +|.|. |....+    ..|+|+
T Consensus       725 ~~L~V~Visaq~L~~~----~~DPYV~V~l~g~p~D~~~k~kTkvi~~NglNPvWnEe~F~F~~V~~pel----a~Lrf~  796 (885)
T 3ohm_B          725 NALRVKVISGQFLSDR----KVGIYVEVDMFGLPVDTRRKYRTRTSQGNSFNPVWDEEPFDFPKVVLPTL----ASLRIA  796 (885)
T ss_dssp             EEEEEEEEEEESCCSS----CCCEEEEEEEESSTTTCBCCCCCCCCSSCSSSCBCCCCCEEEEEESCGGG----CEEEEE
T ss_pred             eEEEEEEEEeccCccc----CCCcEEEEEEeCCCcccccceeeEEeeCCCcCCeeccceeEEeeEEcCCc----CEEEEE
Confidence            4799999999999753    589999999975      2379999877789999999 69998 654432    689999


Q ss_pred             EeecCCCCCCcccEEEEEeceeeeccCCCCCCCCeeeeeeCCCCCc--ceEEEEEEEEccc
Q 019724           76 IRSTGGCFGNSDLGEVFVPVKEMLLRSNGDDDKPMSYNITTPGGRA--KGVLNVSYKFGPS  134 (336)
Q Consensus        76 V~d~d~~~~d~~LG~~~v~L~~l~~~~~~~~~~~~~~~l~~~~g~~--~G~L~lsl~~~~~  134 (336)
                      |||+|    |+|||+++|+|..|.. +      ..++.|++..+..  .++|.|.|++...
T Consensus       797 V~D~d----ddfiG~~~lpL~~L~~-G------yR~vpL~~~~g~~l~~atLfv~i~~~~~  846 (885)
T 3ohm_B          797 AFEEG----GKFVGHRILPVSAIRS-G------YHYVCLRNEANQPLCLPALLIYTEASDY  846 (885)
T ss_dssp             EEETT----TEEEEEEEEETTTCCC-E------EEEEEEECTTSCEEEEEEEEEEEEEEEC
T ss_pred             EEcCC----ccEEeeEEEEHHHcCC-C------ceEEEecCCCCCccCceEEEEEEEEEec
Confidence            99984    8999999999999875 1      2457888766664  6889999988753

>2zkm_X 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase beta-2; phospholipase C, phosphoinositide phospholipase, PLC-beta-2, calcium, coiled coil; 1.62A {Homo sapiens} SCOP: a.39.1.7 b.7.1.1 b.55.1.1 c.1.18.1 PDB: 2fju_B

Probab=99.43  E-value=7.2e-13  Score=138.65  Aligned_cols=111  Identities=19%  Similarity=0.316  Sum_probs=88.9

Q ss_pred             ccEEEEEEEEecCCCCCCCCCCcceEEEEEEcC------cceEEE-EeeCCCCCCeeee-EEEE-EecchhhhcCCcEEE
Q 019724            3 SRALDITVVSASDLKTAGMFSKMNVYAVVTIFG------ESQTTS-VARDCGVRPTWNH-QMRF-NIDEAAAMQNNLTIV   73 (336)
Q Consensus         3 ~g~L~V~vi~Ak~L~~~d~~g~~dPYv~v~l~~------~~~kTk-v~~~~t~nP~WnE-~f~F-~v~~~~~~~~~~~L~   73 (336)
                      .++|+|+|++|++|..    .++||||+|.|.+      .++||+ +++++++||+||| +|.| .|....+    ..|+
T Consensus       677 ~~~L~V~Visa~~L~~----~~~DPYV~V~l~g~p~d~~~k~kTk~vv~~n~~NPvWnEe~f~F~~v~~~el----~~Lr  748 (799)
T 2zkm_X          677 ATTLSITVISGQFLSE----RSVRTYVEVELFGLPGDPKRRYRTKLSPSTNSINPVWKEEPFVFEKILMPEL----ASLR  748 (799)
T ss_dssp             CEEEEEEEEEEESCCS----SCCCEEEEEEEECCTTSCCCCEECCCCSSSCCSSCBCCCCCEEEEEESSGGG----CEEE
T ss_pred             eeeEEEEEEeccccCc----cCCCcEEEEEEEecCCCcccceeecccccCCCCCCeeecceEEEEEEccCCc----cEEE
Confidence            4689999999999985    3689999999964      247999 8777789999999 7999 7865542    5899


Q ss_pred             EEEeecCCCCCCcccEEEEEeceeeeccCCCCCCCCeeeeeeCCCCC--cceEEEEEEEEc
Q 019724           74 YSIRSTGGCFGNSDLGEVFVPVKEMLLRSNGDDDKPMSYNITTPGGR--AKGVLNVSYKFG  132 (336)
Q Consensus        74 v~V~d~d~~~~d~~LG~~~v~L~~l~~~~~~~~~~~~~~~l~~~~g~--~~G~L~lsl~~~  132 (336)
                      |+|||+|    |++||++.|+|+.|..       ...++.|.+..+.  ..++|.|.|++.
T Consensus       749 ~~V~D~d----~d~iG~~~ipl~~L~~-------G~r~v~L~~~~g~~~~~~~Lfv~i~~~  798 (799)
T 2zkm_X          749 VAVMEEG----NKFLGHRIIPINALNS-------GYHHLCLHSESNMPLTMPALFIFLEMK  798 (799)
T ss_dssp             EEEEETT----TEEEEEEEEEGGGBCC-------EEEEEEEECTTCCEEEEEEEEEEEEEE
T ss_pred             EEEEEeC----CCccceEeeehhhcCC-------CcEEEeccCCCCCCCCceEEEEEEEEE
Confidence            9999994    8999999999999875       2356788775555  357788888774

>3qr0_A Phospholipase C-beta (PLC-beta); PH domain, EF hand, C2 domain, TIM barrel domain, hydrolase, calcium binding, phospholipid binding; 2.00A {Sepia officinalis} PDB: 3qr1_A

Probab=99.42  E-value=7.9e-13  Score=138.02  Aligned_cols=112  Identities=13%  Similarity=0.239  Sum_probs=90.9

Q ss_pred             cEEEEEEEEecCCCCCCCCCCcceEEEEEEcC-------cceEEEEeeCCCCCCeeeeE-EEEE-ecchhhhcCCcEEEE
Q 019724            4 RALDITVVSASDLKTAGMFSKMNVYAVVTIFG-------ESQTTSVARDCGVRPTWNHQ-MRFN-IDEAAAMQNNLTIVY   74 (336)
Q Consensus         4 g~L~V~vi~Ak~L~~~d~~g~~dPYv~v~l~~-------~~~kTkv~~~~t~nP~WnE~-f~F~-v~~~~~~~~~~~L~v   74 (336)
                      ++|+|+|++|++|...    ++||||+|.|.+       .++||+++++++.||+|||+ |.|. |....+    ..|+|
T Consensus       650 ~~L~V~Visaq~L~~~----~~DPYV~V~l~g~p~d~~~~k~kTkvv~~nglNPvWNE~~F~F~~v~~pel----a~Lrf  721 (816)
T 3qr0_A          650 GTIEIKIISAQFLSDK----QISSYVEVEMYGLPTDTVRKKFKTKIIENNGMDPYYDEKVFVFKKVVLPDL----AVVRI  721 (816)
T ss_dssp             EEEEEEEEEEECCCSS----CCCEEEEEEEESSGGGCEEEEEECCCBCSCSSCCBCCCCCEEEEEESCGGG----CEEEE
T ss_pred             eEEEEEEEEcccCCCC----CCCCeEEEEEeCCCcccccceeeeEEecCCCCCCeEcCceeEEccccCCCc----cEEEE
Confidence            5799999999999753    589999999975       34799998877899999998 9998 755442    68999


Q ss_pred             EEeecCCCCCCcccEEEEEeceeeeccCCCCCCCCeeeeeeCCCCCcc--eEEEEEEEEccc
Q 019724           75 SIRSTGGCFGNSDLGEVFVPVKEMLLRSNGDDDKPMSYNITTPGGRAK--GVLNVSYKFGPS  134 (336)
Q Consensus        75 ~V~d~d~~~~d~~LG~~~v~L~~l~~~~~~~~~~~~~~~l~~~~g~~~--G~L~lsl~~~~~  134 (336)
                      +|||++    |++||+++|+|+.|.. +      ..++.|.+..++..  ++|.|.|++...
T Consensus       722 ~V~D~d----ddfiG~~~ipL~~L~~-G------yR~vpL~~~~g~~~~~atLfv~i~~~~~  772 (816)
T 3qr0_A          722 IVSEEN----GKFIGHRVMPLDGIKP-G------YRHVPLRNESNRPLGLASVFAHIVAKDY  772 (816)
T ss_dssp             EEEETT----SCEEEEEEEESTTCCC-E------EEEEEEECTTSCEEEEEEEEEEEEEEEC
T ss_pred             EEEecC----CCeeeEEEEEHHHcCC-c------ceEEEEeCCCCCCCCceEEEEEEEEEec
Confidence            999983    7899999999999876 1      24678887766653  688888887753

>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A

Probab=99.39  E-value=5e-13  Score=137.99  Aligned_cols=106  Identities=17%  Similarity=0.263  Sum_probs=87.5

Q ss_pred             CccEEEEEEEEecCCCCCCCCCCcceEEEEEEcC-----cceEEEEeeCCCCCCeeeeEEEEEecchhhhcCCcEEEEEE
Q 019724            2 GSRALDITVVSASDLKTAGMFSKMNVYAVVTIFG-----ESQTTSVARDCGVRPTWNHQMRFNIDEAAAMQNNLTIVYSI   76 (336)
Q Consensus         2 ~~g~L~V~vi~Ak~L~~~d~~g~~dPYv~v~l~~-----~~~kTkv~~~~t~nP~WnE~f~F~v~~~~~~~~~~~L~v~V   76 (336)
                      ..++|+|+|++|++|...+.++++||||++++..     .++||++++ +++||+|||+|.|.+....   ....|.|+|
T Consensus       170 ~~~~L~V~v~~a~~L~~~d~~g~sDPyvkv~l~p~~~~~~k~kT~v~~-~tlnP~wne~f~f~~~~~~---~~~~L~v~v  245 (674)
T 3pfq_A          170 DREVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIK-SSLNPEWNETFRFQLKESD---KDRRLSVEI  245 (674)
T ss_dssp             CSSEEEEEEEEEESCCCCSTTSSCCEEEEEEEESCSSCCSCEECCCCS-SCSSCEEEEEEEEECCSTT---TTCEEEEEE
T ss_pred             ccceeeeeeecccccCCCCcccccCcccccccccCccccccccccccc-cccCCCccceeeeecccCC---ccceeeeEE
Confidence            3568999999999999999999999999999943     348999955 5799999999999987543   346799999


Q ss_pred             eecCCCCCCcccEEEEEeceeeeccCCCCCCCCeeeeeeC
Q 019724           77 RSTGGCFGNSDLGEVFVPVKEMLLRSNGDDDKPMSYNITT  116 (336)
Q Consensus        77 ~d~d~~~~d~~LG~~~v~L~~l~~~~~~~~~~~~~~~l~~  116 (336)
                      ||+|...+|++||++.|+|.+|..  ..   ...|+.+..
T Consensus       246 ~d~d~~~~dd~iG~~~i~l~~l~~--~~---~~~w~~Lls  280 (674)
T 3pfq_A          246 WDWDLTSRNDFMGSLSFGISELQK--AG---VDGWFKLLS  280 (674)
T ss_dssp             EECCSSSCCEECCBCCCBTTHHHH--CC---EEEEEECBC
T ss_pred             eecccccccccccccccchhhhcc--CC---cccceeecc
Confidence            999887799999999999999886  22   135666654

>1yrk_A NPKC-delta, protein kinase C, delta type; C2 domain, protein binding; HET: PTR; 1.70A {Homo sapiens} PDB: 1bdy_A

Probab=99.16  E-value=1.8e-10  Score=92.63  Aligned_cols=112  Identities=17%  Similarity=0.155  Sum_probs=82.8

Q ss_pred             cEEEEEEEEecCCCCCCCCCCcceEEEEEEcCcc----eEEEEeeCCCCCCeeeeEEEEEecchhhhcCCcEEEEEEeec
Q 019724            4 RALDITVVSASDLKTAGMFSKMNVYAVVTIFGES----QTTSVARDCGVRPTWNHQMRFNIDEAAAMQNNLTIVYSIRST   79 (336)
Q Consensus         4 g~L~V~vi~Ak~L~~~d~~g~~dPYv~v~l~~~~----~kTkv~~~~t~nP~WnE~f~F~v~~~~~~~~~~~L~v~V~d~   79 (336)
                      ..|+|.+.++.--.-.......||||.|.++...    .+|-+.++.|..|+|||+|.-.|.+.      +.|.|.|++.
T Consensus         6 ~flRi~~~~~~~~~~~~~~~~lDPy~aV~vdE~~~~e~g~t~~~K~kT~~P~Wne~Fd~~V~~G------r~l~i~Vfh~   79 (126)
T 1yrk_A            6 PFLRIAFNSYELGSLQAEDEANQPFCAVKMKEALSTERGKTLVQKKPTMYPEWKSTFDAHIYEG------RVIQIVLMRA   79 (126)
T ss_dssp             CEEEEEEEEEECSSCCCSSSSCCCEEEEEEEEEEEETTEEEEECCSCCBCCCTTCEEEEECCTT------CEEEEEEEEE
T ss_pred             ccEEeeeccccccccCCccccCCceEEEEeeeeEEcccceeecccCCCCCcCccceEEeeeeCC------EEEEEEEEcC
Confidence            4688888776532211222358999999988644    35535577899999999999999765      7899999987


Q ss_pred             CCCCCCcccEEEEEeceeeecc---CCCCCCCCeeeeeeCCCCCcceEEEEEEEEc
Q 019724           80 GGCFGNSDLGEVFVPVKEMLLR---SNGDDDKPMSYNITTPGGRAKGVLNVSYKFG  132 (336)
Q Consensus        80 d~~~~d~~LG~~~v~L~~l~~~---~~~~~~~~~~~~l~~~~g~~~G~L~lsl~~~  132 (336)
                       .   .+||..|+|.+.+|+.+   .++.  ...|+.|.     +.|+|++.++|.
T Consensus        80 -a---~~fvAn~tV~~edL~~~c~~~~g~--~e~WvdLe-----P~Gkl~~~i~~~  124 (126)
T 1yrk_A           80 -A---EEPVSEVTVGVSVLAERCKKNNGK--AEFWLDLQ-----PQAKVLMSVQYF  124 (126)
T ss_dssp             -T---TEEEEEEEEEHHHHHHHHHTTTTE--EEEEEECB-----SSCEEEEEEEEE
T ss_pred             -C---CCeeeEEEEEHHHHHhhhccCCCc--eEEEEecc-----cCcEEEEEEEEe
Confidence             2   28999999999999974   2222  34677764     589999999975

>2enj_A NPKC-theta, protein kinase C theta type; beta-sandwich, phosphotyrosine binding, TCR, T-cell, diacylglycerol, phorbol ester, structural genomics; NMR {Homo sapiens}

Probab=99.14  E-value=2.6e-10  Score=92.80  Aligned_cols=114  Identities=12%  Similarity=0.172  Sum_probs=83.0

Q ss_pred             cEEEEEEEEecCCCCCC-CCCCcceEEEEEEcCcc----eEEEEeeCCCCCCeeeeEEEEEecchhhhcCCcEEEEEEee
Q 019724            4 RALDITVVSASDLKTAG-MFSKMNVYAVVTIFGES----QTTSVARDCGVRPTWNHQMRFNIDEAAAMQNNLTIVYSIRS   78 (336)
Q Consensus         4 g~L~V~vi~Ak~L~~~d-~~g~~dPYv~v~l~~~~----~kTkv~~~~t~nP~WnE~f~F~v~~~~~~~~~~~L~v~V~d   78 (336)
                      ..|+|.+.+..-..... .....||||.|.++...    .+|-+.|+.|..|+|||+|.-.|.+.      +.|.|.|++
T Consensus        10 ~flRi~l~~~~~~~~~~~~~~~lDPY~aV~VdE~~~te~gqtl~~KkkT~~P~Wne~Fd~~V~~G------r~l~i~Vfh   83 (138)
T 2enj_A           10 PFLRIGLSNFDCGSCQSCQGEAVNPYCAVLVKEYVESENGQMYIQKKPTMYPPWDSTFDAHINKG------RVMQIIVKG   83 (138)
T ss_dssp             CCEEEEEEEEECCCCCCSCCCCCCCEEEEEEEEEEEETTEEEEEEEEEEECCCSSSEEEECCCSS------CEEEEEEEC
T ss_pred             cceEEEeeccccCCCCCcccccCCceEEEEeeeeeeccCceeecccCCCCCccccceEeeeEECC------eEEEEEEEc
Confidence            46888887766433221 12358999999988652    45523355689999999999998764      789999997


Q ss_pred             cCCCCCCcccEEEEEeceeeecc---CCCCCCCCeeeeeeCCCCCcceEEEEEEEEccc
Q 019724           79 TGGCFGNSDLGEVFVPVKEMLLR---SNGDDDKPMSYNITTPGGRAKGVLNVSYKFGPS  134 (336)
Q Consensus        79 ~d~~~~d~~LG~~~v~L~~l~~~---~~~~~~~~~~~~l~~~~g~~~G~L~lsl~~~~~  134 (336)
                      . .   .+||..|+|.+.+|+.+   ..+.  ...|+.|.     +.|+|++.++|.-.
T Consensus        84 ~-a---~~fVAn~tV~~edL~~~ck~~~g~--~e~WvdLe-----P~Gkl~v~i~~~~e  131 (138)
T 2enj_A           84 K-N---VDLISETTVELYSLAERCRKNNGK--TEIWLELK-----PQGRMLMNARYFLE  131 (138)
T ss_dssp             S-S---CSCCEEEEEESHHHHHHHHHTTTC--EEEEEECB-----SSCEEEEEEEECCC
T ss_pred             C-C---CCeeeEEEEEHHHHHhhhccCCCc--eEEEEecc-----cCcEEEEEEEEEEe
Confidence            6 2   28999999999999974   2332  34677764     58999999999633

>1dx0_A Prion protein; brain, repeat; NMR {Bos taurus} SCOP: d.6.1.1 PDB: 1dx1_A 1qlx_A 1qlz_A

Probab=96.70  E-value=4.4e-05  Score=65.93  Aligned_cols=32  Identities=28%  Similarity=0.241  Sum_probs=9.9

Q ss_pred             cccCCCCCCchhhHHHHHHHHHHHHHHHHhcC
Q 019724          281 KKKGMAAGLGLGMGAGLLGGLAGGLTLAAAGG  312 (336)
Q Consensus       281 ~~~~~~~~~~~~~~~g~~~g~~~g~~~~~~~~  312 (336)
                      +++++.+++++++++|+++|||+|+||++++.
T Consensus        93 k~~kg~~g~a~aAa~Gag~G~LGGalLG~a~~  124 (219)
T 1dx0_A           93 KPKTNMKHVAGAAAAGAVVGGLGGYMLGSAMS  124 (219)
T ss_dssp             --------------------CCCSCEECCCCC
T ss_pred             CCCCCcchHHHHHHHHHHhhhhhhhhhhcccc
Confidence            33444567777888999999999999988743

>2yrb_A Protein fantom; beta sandwich, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.7.1.1

Probab=96.46  E-value=0.008  Score=50.06  Aligned_cols=127  Identities=14%  Similarity=0.212  Sum_probs=81.4

Q ss_pred             cEEEEEEEEecCCCCC-CCCCCcce--EEEEEEcC-cceEEEEeeCCCCCCeeeeEEEEEecchhhhc---CCcEEEEEE
Q 019724            4 RALDITVVSASDLKTA-GMFSKMNV--YAVVTIFG-ESQTTSVARDCGVRPTWNHQMRFNIDEAAAMQ---NNLTIVYSI   76 (336)
Q Consensus         4 g~L~V~vi~Ak~L~~~-d~~g~~dP--Yv~v~l~~-~~~kTkv~~~~t~nP~WnE~f~F~v~~~~~~~---~~~~L~v~V   76 (336)
                      +.++|.|.++.--+.. ...+..+|  ||.+.+-. +.+.|.+++  +.+|.+|.+..|.|.......   ....|.|+|
T Consensus        18 nlfEihi~~~~~~~~~l~~~~d~~p~tF~t~dF~dfEtq~Tpv~~--G~~p~y~fts~Y~V~~d~~fl~yL~~~~l~lEL   95 (156)
T 2yrb_A           18 NLFEIHINKVTFSSEVLQASGDKEPVTFCTYAFYDFELQTTPVVR--GLHPEYNFTSQYLVHVNDLFLQYIQKNTITLEV   95 (156)
T ss_dssp             EEEEEEEEEECCCHHHHHHHCSSCCEEEEEECSTTCCCEECCCEE--SSSCCCCEEEEEEECCSHHHHHHHHHCCEEEEE
T ss_pred             cEEEEEEeEEEEcHHHHhhccccCCcEEEEEEEeceEeeeccccc--CCCCCcceEEEEEEEeCHHHHHHHhcCCEEEEE
Confidence            4678888877521100 00122344  56555444 447888754  689999999998886543211   234688888


Q ss_pred             eecCCCCCCcccEEEEEeceeeeccCCCCCCCCeeeeeeCCCC--CcceEEEEEEEEcccCC
Q 019724           77 RSTGGCFGNSDLGEVFVPVKEMLLRSNGDDDKPMSYNITTPGG--RAKGVLNVSYKFGPSSS  136 (336)
Q Consensus        77 ~d~d~~~~d~~LG~~~v~L~~l~~~~~~~~~~~~~~~l~~~~g--~~~G~L~lsl~~~~~~~  136 (336)
                      ... ....-+.||.++|+|.+|+++.+   .......|...++  ..-|+|.+.|+++....
T Consensus        96 hqa-~g~~~~tla~~~I~l~~lLe~~~---~i~g~~~L~g~~g~~~~~G~LeywiRL~~Pi~  153 (156)
T 2yrb_A           96 HQA-YSTEYETIAACQLKFHEILEKSG---RIFCTASLIGTKGDIPNFGTVEYWFRLRVSGP  153 (156)
T ss_dssp             EEE-CSSCEEEEEEEEECCSHHHHCCS---CEEEEEEECBSSSCCTTSEEEEEEEEEEECCC
T ss_pred             EEe-eCCCceEEEEEEEEhHHhhCcCC---ceEEEEEEEcCCCCcceEEEEEEEEEEecccC
Confidence            876 33345679999999999997422   1223456665556  56899999999986554

>3l4c_A Dedicator of cytokinesis protein 1; DOCK180, DOCK1, phosphoinositide specificity, guanine exchan factor, RHO GTPase, cytoskeleton, cell migration; 2.37A {Homo sapiens}

Probab=95.91  E-value=0.077  Score=46.59  Aligned_cols=57  Identities=12%  Similarity=0.173  Sum_probs=40.7

Q ss_pred             eEEEEeeCCCCCCeeeeEEEEEecchhhhcCCcEEEEEEeecCCCC----CCcccEEEEEecee
Q 019724           38 QTTSVARDCGVRPTWNHQMRFNIDEAAAMQNNLTIVYSIRSTGGCF----GNSDLGEVFVPVKE   97 (336)
Q Consensus        38 ~kTkv~~~~t~nP~WnE~f~F~v~~~~~~~~~~~L~v~V~d~d~~~----~d~~LG~~~v~L~~   97 (336)
                      ++|-|. ..+.+|.|+|++++.|....  ..+..|.|++++.....    .+..+|.+.++|-+
T Consensus        79 ~~S~V~-YHnk~P~w~EtIKi~LP~~~--~~~~HLlFtFrH~S~~~k~dk~E~pfg~a~lPL~~  139 (220)
T 3l4c_A           79 YKSVIY-YQVKQPRWFETVKVAIPIED--VNRSHLRFTFRHRSSQDSKDKSEKIFALAFVKLMR  139 (220)
T ss_dssp             EECCCC-TTCSSCCCCEEEEEEECTTS--STTEEEEEEEEECCCCSSCCCCCCEEEEEEEESBC
T ss_pred             EEEEEE-EcCCCCCceEeEEEeeChhh--cCCeEEEEEEEEecccccccccCCeeEEEEEEccc
Confidence            777774 44689999999999997764  24577889988752211    23468999998754

>2wxf_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit delta isoform; transferase, phosphoprotein, isoform-specific inhibitors; HET: 039; 1.90A {Mus musculus} PDB: 2wxg_A* 2wxh_A* 2wxi_A* 2wxj_A* 2wxk_A* 2wxl_A* 2wxm_A* 2wxn_A* 2wxo_A* 2wxp_A* 2wxq_A* 2wxr_A 2x38_A*

Probab=95.23  E-value=0.12  Score=54.85  Aligned_cols=90  Identities=9%  Similarity=0.250  Sum_probs=56.9

Q ss_pred             ccEEEEEEEEecCCCCCCCCCCcceEEEEEEcCcc------eEEEEeeCCCCCCeeeeEEEEEecchhhhcCCcEEEEEE
Q 019724            3 SRALDITVVSASDLKTAGMFSKMNVYAVVTIFGES------QTTSVARDCGVRPTWNHQMRFNIDEAAAMQNNLTIVYSI   76 (336)
Q Consensus         3 ~g~L~V~vi~Ak~L~~~d~~g~~dPYv~v~l~~~~------~kTkv~~~~t~nP~WnE~f~F~v~~~~~~~~~~~L~v~V   76 (336)
                      ...|+|+|+++.++...   ...+-||.+.|-...      .+|+.+. ...++.|||.+.|++.-..+ .....|.|+|
T Consensus       216 ~~~f~i~i~~~~~~~~~---~~~~~~V~~~l~~g~~~l~~~~~T~~~~-~~~~~~Wne~l~f~i~i~dL-Pr~a~L~~ti  290 (940)
T 2wxf_A          216 EQPFSIELIEGRKVNAD---ERMKLVVQAGLFHGNEMLCKTVSSSEVN-VCSEPVWKQRLEFDISVCDL-PRMARLCFAL  290 (940)
T ss_dssp             CSEEEEEEEEEECCCC------CEEEEEEEEEETTEESSCCEECCCEE-SCSSCEEEEEEEEEEEGGGC-CTTCEEEEEE
T ss_pred             CCceEEEEEEecccCCC---CCceEEEEEEEEECCEEccCceeccccc-CCCCcccceEEEcccccccC-CcccEEEEEE
Confidence            35789999999988643   346788887765322      4444322 24689999999998755432 3467899999


Q ss_pred             eecCCC--C----------CCcccEEEEEecee
Q 019724           77 RSTGGC--F----------GNSDLGEVFVPVKE   97 (336)
Q Consensus        77 ~d~d~~--~----------~d~~LG~~~v~L~~   97 (336)
                      |+....  .          .+..||.+.++|-+
T Consensus       291 ~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~lFd  323 (940)
T 2wxf_A          291 YAVVEKAKKARSTKKKSKKADCPIAWANLMLFD  323 (940)
T ss_dssp             EEEC----------------CEEEEEEEEESBC
T ss_pred             EEecCCccCccccccccccccceEEEEeeeEEC
Confidence            986221  1          12357777766644

>3hhm_A Phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha isoform; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_A 2rd0_A 4a55_A* 2enq_A

Probab=95.17  E-value=0.18  Score=54.07  Aligned_cols=92  Identities=17%  Similarity=0.179  Sum_probs=60.0

Q ss_pred             ccEEEEEEEEecCCCCCCCCCCcceEEEEEEcCcc------eEEEEeeCCCCCCeeeeEEEEEecchhhhcCCcEEEEEE
Q 019724            3 SRALDITVVSASDLKTAGMFSKMNVYAVVTIFGES------QTTSVARDCGVRPTWNHQMRFNIDEAAAMQNNLTIVYSI   76 (336)
Q Consensus         3 ~g~L~V~vi~Ak~L~~~d~~g~~dPYv~v~l~~~~------~kTkv~~~~t~nP~WnE~f~F~v~~~~~~~~~~~L~v~V   76 (336)
                      ...++|+|+++.++.... ....+.||++.|-...      .+|+.  ....++.|||.+.|++.-..+ .....|.|+|
T Consensus       354 ~~~f~v~i~~~~~~n~~~-~~~~~~~V~~~l~hG~~~L~~~~~T~~--~~~~~~~Wne~l~f~i~i~dL-Pr~arL~~tl  429 (1091)
T 3hhm_A          354 NSALRIKILCATYVNVNI-RDIDKIYVRTGIYHGGEPLCDNVNTQR--VPCSNPRWNEWLNYDIYIPDL-PRAARLCLSI  429 (1091)
T ss_dssp             CSEEEEEEEEESCCCCCC-SSCCCCCEEEEEESSSCSSCCEECCCC--CCTTSCEEEEEEEEEEEGGGC-CTTCEEEEEE
T ss_pred             CCCEEEEEEEecCCCCCc-cccceEEEEEEEEECCEEccCceeccc--cCCCCCCCCeeEEecCccccC-ChhcEEEEEE
Confidence            357899999998875322 2345778888876533      33443  234678899999998854432 3467899999


Q ss_pred             eecCCCC----CCcccEEEEEeceee
Q 019724           77 RSTGGCF----GNSDLGEVFVPVKEM   98 (336)
Q Consensus        77 ~d~d~~~----~d~~LG~~~v~L~~l   98 (336)
                      |+.....    .+..||.+.+.|-+.
T Consensus       430 ~~~~~~~~~~~~~~~lg~~n~~lfd~  455 (1091)
T 3hhm_A          430 CSVKGRKGAKEEHCPLAWGNINLFDY  455 (1091)
T ss_dssp             CCCCCCC-------CCEEEEEESBCT
T ss_pred             EEecCccCcccccceeEEeeeeeEcc
Confidence            9863321    234688888877653

>2y3a_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit beta isoform; transferase, phosphoinositide 3-kinase, RTK; HET: GD9; 3.30A {Mus musculus}

Probab=90.86  E-value=0.15  Score=54.70  Aligned_cols=72  Identities=19%  Similarity=0.333  Sum_probs=48.0

Q ss_pred             ccEEEEEEEEecCCCCCCCCCCcceEEEEEEc--Ccc----eEEEEeeCCCCCCeeeeEEEEEecchhhhcCCcEEEEEE
Q 019724            3 SRALDITVVSASDLKTAGMFSKMNVYAVVTIF--GES----QTTSVARDCGVRPTWNHQMRFNIDEAAAMQNNLTIVYSI   76 (336)
Q Consensus         3 ~g~L~V~vi~Ak~L~~~d~~g~~dPYv~v~l~--~~~----~kTkv~~~~t~nP~WnE~f~F~v~~~~~~~~~~~L~v~V   76 (336)
                      ...++|+|+++.++...   ...+.||.+.|-  .+.    .+|+. +....++.|||.+.|++.-..+ .....|.|+|
T Consensus       352 ~~~f~i~i~~~~~~~~~---~~~~~~V~~~l~~g~~~L~~~~~T~~-~~~~~~~~Wnewl~f~i~~~dL-Pr~a~L~~ti  426 (1092)
T 2y3a_A          352 NNPFQITLVKGNKLNTE---ETVKVHVRAGLFHGTELLCKTVVSSE-ISGKNDHIWNEQLEFDINICDL-PRMARLCFAV  426 (1092)
T ss_dssp             CSEEEEEECCCCCCCCC---SSCCCCCBCCEEETTEESSCCCBCCC-CCSSSCCCCCEEEEEEEESSSC-CTTCEEEEEC
T ss_pred             CCCEEEEEEEeccCCCC---CCceEEEEEEEEECCEEccCceeccc-ccCCCCCccceeEEeCCccccC-ChhcEEEEEE
Confidence            35789999999887643   245667765543  322    44443 2235689999999998754432 3467899999


Q ss_pred             eec
Q 019724           77 RST   79 (336)
Q Consensus        77 ~d~   79 (336)
                      |+.
T Consensus       427 ~~~  429 (1092)
T 2y3a_A          427 YAV  429 (1092)
T ss_dssp             CCC
T ss_pred             EEe
Confidence            986

>2qzq_A Axin interactor, dorsalization associated protein; beta sheet sandwich, coiled coil, signaling protein, lipid binding protein; 1.90A {Danio rerio} PDB: 2qz5_A

Probab=89.41  E-value=0.64  Score=38.24  Aligned_cols=91  Identities=18%  Similarity=0.182  Sum_probs=52.2

Q ss_pred             EEEEEEEEecCCCCCCCCCCcceEEEEEEcCcc-------eEEEEe-eCCCCCCeeeeEEEEEecchhhhcCCcEEEEEE
Q 019724            5 ALDITVVSASDLKTAGMFSKMNVYAVVTIFGES-------QTTSVA-RDCGVRPTWNHQMRFNIDEAAAMQNNLTIVYSI   76 (336)
Q Consensus         5 ~L~V~vi~Ak~L~~~d~~g~~dPYv~v~l~~~~-------~kTkv~-~~~t~nP~WnE~f~F~v~~~~~~~~~~~L~v~V   76 (336)
                      .|+|+|.+- +|++..  ...|||+.|++.+..       +.|.+. +..+..=.||.++.+...-+.+ .+...|.||+
T Consensus        15 ~l~v~Ie~i-glkda~--~~~~P~~tVSV~D~~G~~ve~~QdTpv~~~~~~~yv~f~~~v~lqtple~l-p~G~aivfEl   90 (152)
T 2qzq_A           15 LLTLTIEKI-GLKDAG--QCIDPYITVSVKDLNGIDLNPVQDTPVATRKEDTYIHFSVDVEIQRHLEKL-PKGAAIFFEF   90 (152)
T ss_dssp             EEEEEEEEE-ECTTGG--GCEEEEEEEEEECTTSCBSSCCEECCCCCEECSSEEEEEEEEECSSCGGGS-CTTCEEEEEE
T ss_pred             EEEEEEEEE-EeCCHH--HccCCeEEEEEEcCCCCCccccccCCCcceecCCeEEEeeEEEeeCcHHHC-CCCcEEEEEE
Confidence            466666664 665432  347999999987643       666653 2222333455444443322222 2356788999


Q ss_pred             eecCCCCCCc--ccEEEEEeceeeec
Q 019724           77 RSTGGCFGNS--DLGEVFVPVKEMLL  100 (336)
Q Consensus        77 ~d~d~~~~d~--~LG~~~v~L~~l~~  100 (336)
                      .++ ...+.+  ....+.+.+++|..
T Consensus        91 kH~-k~kkkk~S~kCw~f~~~d~i~~  115 (152)
T 2qzq_A           91 KHY-KPKKRFTSTKCFAFMEMDEIKP  115 (152)
T ss_dssp             EEE-ETTTTEEEEEEEEEEEGGGCCS
T ss_pred             EEe-cccceeeeeeeEEEEEhhhccc
Confidence            887 333333  35667777776654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	336
d1wfja_	136	b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cr	2e-14
d2nq3a1	133	b.7.1.1 (A:13-145) E3 ubiquitin-protein ligase Itc	3e-11
d1w15a_	138	b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegi	8e-08
d2cjta1	128	b.7.1.1 (A:1-128) Unc-13 homolog A {Rat (Rattus no	7e-07
d2bwqa1	125	b.7.1.2 (A:729-853) Regulating synaptic membrane e	1e-06
d1rlwa_	126	b.7.1.1 (A:) Domain from cytosolic phospholipase A	2e-06
d1dqva2	145	b.7.1.2 (A:425-569) Synaptotagmin III {Rat (Rattus	3e-06
d1a25a_	132	b.7.1.2 (A:) C2 domain from protein kinase c (beta	6e-06
d2cm5a1	137	b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat (	2e-05
d2ep6a1	126	b.7.1.1 (A:92-217) Multiple C2 and transmembrane d	3e-05
d1rsya_	143	b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicu	7e-05
d1rh8a_	142	b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [Tax	1e-04
d1ugka_	138	b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens	2e-04

>d1wfja_ b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 136

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2 domain protein At1g63220
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 67.1 bits (163), Expect = 2e-14
 Identities = 30/133 (22%), Positives = 56/133 (42%), Gaps = 9/133 (6%)

Query: 6   LDITVVSASDLKTAGMFSKMNVYAVVTIFGESQTTSVARDCGVRPTWNHQMRFNIDEAAA 65
           L++ +VSA  L+ A   + M+ Y  +T   + Q ++VA   G  P WN    F + E   
Sbjct: 12  LEVVLVSAKGLEDADFLNNMDPYVQLTCRTQDQKSNVAEGMGTTPEWNETFIFTVSEGT- 70

Query: 66  MQNNLTIVYSIRSTGGCFGNSDLGEVFVPVKEMLLRSNGDDDKPMSYNITTPGGRAKGVL 125
                  ++          +  +GE  +P++ + +        P +YN+       KG +
Sbjct: 71  -TELKAKIFDKDVGT---EDDAVGEATIPLEPVFVE---GSIPPTAYNV-VKDEEYKGEI 122

Query: 126 NVSYKFGPSSSAN 138
            V+  F PS  ++
Sbjct: 123 WVALSFKPSGPSS 135

>d2nq3a1 b.7.1.1 (A:13-145) E3 ubiquitin-protein ligase Itchy {Human (Homo sapiens) [TaxId: 9606]} Length = 133

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: E3 ubiquitin-protein ligase Itchy
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.2 bits (140), Expect = 3e-11
 Identities = 21/127 (16%), Positives = 46/127 (36%), Gaps = 12/127 (9%)

Query: 6   LDITVVSASDLKTAGMFSKMNVYAVVTIFGESQTTSVARDCGVRPTWNHQMRFNIDEAAA 65
           L ITV+SA   +    +   + Y  VT+ G+S+ T    +    P W   +   +     
Sbjct: 8   LQITVISAKLKENKKNWFGPSPYVEVTVDGQSKKTEKCNNT-NSPKWKQPLTVIVTP--V 64

Query: 66  MQNNLTIVYSIRSTGGCFGNSD-LGEVFVPVKEMLLRSNGD-DDKPMSYNITTPGGRAK- 122
            + +  +            +   LG   + + E L  +N   ++  ++  +       + 
Sbjct: 65  SKLHFRVWSHQT-----LKSDVLLGTAALDIYETLKSNNMKLEEVVVTLQLGGDKEPTET 119

Query: 123 -GVLNVS 128
            G L++ 
Sbjct: 120 IGDLSIC 126

>d1w15a_ b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 138

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin IV
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 48.6 bits (115), Expect = 8e-08
 Identities = 14/100 (14%), Positives = 34/100 (34%), Gaps = 8/100 (8%)

Query: 3   SRALDITVVSASDLKTAGMFSKMNVYAVVTIFG-----ESQTTSVARDCGVRPTWNHQMR 57
           +  L + V+ A  L  + +    + Y  V ++        + T V +       +N    
Sbjct: 14  TNTLTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKKCT-PNAVFNELFV 72

Query: 58  FNIDEAAAMQNNLTIVYSIRSTGGCFGNSDLGEVFVPVKE 97
           F+I   +  + ++  +      G    N  +G + +    
Sbjct: 73  FDIPCESLEEISVEFLVLDSERGS--RNEVIGRLVLGATA 110

>d2cjta1 b.7.1.1 (A:1-128) Unc-13 homolog A {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 128

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Unc-13 homolog A
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 45.5 bits (107), Expect = 7e-07
 Identities = 20/118 (16%), Positives = 38/118 (32%), Gaps = 13/118 (11%)

Query: 6   LDITVVSASDLKTAGMFSKMNVYAVVTIFGESQTTSVARDCGVRPTWNHQMRFNIDEAAA 65
           L + V  A          K N Y  + +     TT   R  G +P+W     F I+    
Sbjct: 4   LCVGVKKAKFDGAQE---KFNTYVTLKVQNVKSTTIAVR--GSQPSWEQDFMFEINRLDL 58

Query: 66  MQNNLTIVYSIRSTGGCFGNSDLGEVFVPVKEMLLRSNGDDDKPMSYNITTPGGRAKG 123
                  V++             G V++P++   +R + ++       + +    A  
Sbjct: 59  GL--TVEVWNKGLIWDTMV----GTVWIPLRT--IRQSNEEGPGEWLTLDSQAIMADS 108

>d2bwqa1 b.7.1.2 (A:729-853) Regulating synaptic membrane exocytosis protein, rim2 {Human (Homo sapiens) [TaxId: 9606]} Length = 125

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Regulating synaptic membrane exocytosis protein, rim2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.1 bits (106), Expect = 1e-06
 Identities = 18/106 (16%), Positives = 40/106 (37%), Gaps = 9/106 (8%)

Query: 3   SRALDITVVSASDLKTAGMFSKMNVYAVVTIFGES-----QTTSVARDCGVRPTWNHQMR 57
              L +T++ A DL +       N Y  +    +      + T   +   + P WN    
Sbjct: 13  GHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKT-LEPKWNQTFI 71

Query: 58  FN-IDEAAAMQNNLTI-VYSIRSTGGCFGNSDLGEVFVPVKEMLLR 101
           ++ +      +  L I ++  ++      +  LGE+ + ++  LL 
Sbjct: 72  YSPVHRREFRERMLEITLWD-QARVREEESEFLGEILIELETALLD 116

>d1rlwa_ b.7.1.1 (A:) Domain from cytosolic phospholipase A2 {Human (Homo sapiens) [TaxId: 9606]} Length = 126

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from cytosolic phospholipase A2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.3 bits (104), Expect = 2e-06
 Identities = 19/135 (14%), Positives = 35/135 (25%), Gaps = 13/135 (9%)

Query: 3   SRALDITVVSASDLK---TAGMFSKMNVYAVVTIFGESQTTSVARDCGVRPTWNHQMRFN 59
           S    + V+ A+ +       M    + Y  + I     +    R             F 
Sbjct: 2   SHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFE 61

Query: 60  IDEAAAMQNNLTIVYSIRSTGGCFGNSDLGEVFVPVKEMLLRSNGDDDKPMSYNITTPGG 119
                  +N L I     +      +  LG     V  M +    +     +        
Sbjct: 62  FILDPNQENVLEITLMDANY---VMDETLGTATFTVSSMKVGEKKEVPFIFN-------Q 111

Query: 120 RAKGVLNVSYKFGPS 134
             + VL +S +   S
Sbjct: 112 VTEMVLEMSLEVASS 126

>d1dqva2 b.7.1.2 (A:425-569) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 145

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin III
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 44.0 bits (103), Expect = 3e-06
 Identities = 16/99 (16%), Positives = 38/99 (38%), Gaps = 6/99 (6%)

Query: 3   SRALDITVVSASDLKTAGMFSKMNVYAVVTIFGESQTTSVARDCGVRPT----WNHQMRF 58
           +  L +T++ AS+LK   +    + Y   ++  E +     +    + T    +N  + F
Sbjct: 19  AGLLTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALVF 78

Query: 59  NIDEAAAMQNNLTIVYSIRSTGGCFGNSDLGEVFVPVKE 97
           ++   +     L+I  ++        N  +G   V  + 
Sbjct: 79  DVAPESVENVGLSI--AVVDYDCIGHNEVIGVCRVGPEA 115

>d1a25a_ b.7.1.2 (A:) C2 domain from protein kinase c (beta) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 132

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2 domain from protein kinase c (beta)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 43.1 bits (101), Expect = 6e-06
 Identities = 16/97 (16%), Positives = 36/97 (37%), Gaps = 7/97 (7%)

Query: 6   LDITVVSASDLKTAGMFSKMNVYAVVTIFGESQTTSVARDCGVR----PTWNHQMRFNID 61
           L + V  A +L         + Y  + +  + ++ S  +   ++    P WN   RF + 
Sbjct: 17  LIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQLK 76

Query: 62  EAAAMQNNLTIVYSIRSTGGCFGNSDLGEVFVPVKEM 98
           E+   +     ++    T     N  +G +   + E+
Sbjct: 77  ESDKDRRLSVEIWDWDLTS---RNDFMGSLSFGISEL 110

>d2cm5a1 b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 137

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2b-domain of rabphilin
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 41.7 bits (97), Expect = 2e-05
 Identities = 8/76 (10%), Positives = 25/76 (32%), Gaps = 6/76 (7%)

Query: 3  SRALDITVVSASDLKTAGMFSKMNVYAVVTIFG-----ESQTTSVARDCGVRPTWNHQMR 57
             L + ++    L         + +  + +           T + +   + P +N +  
Sbjct: 14 QGGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKT-LNPEFNEEFF 72

Query: 58 FNIDEAAAMQNNLTIV 73
          ++I  +   + +L I 
Sbjct: 73 YDIKHSDLAKKSLDIS 88

>d2ep6a1 b.7.1.1 (A:92-217) Multiple C2 and transmembrane domain-containing protein 2, MCTP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 126

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Multiple C2 and transmembrane domain-containing protein 2, MCTP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.9 bits (95), Expect = 3e-05
 Identities = 25/128 (19%), Positives = 47/128 (36%), Gaps = 14/128 (10%)

Query: 6   LDITVVSASDLKTAGMFSKMNVYAVVTIFGESQTTSVARDCGVRPTWNHQMRFNIDEAAA 65
           L + V+ A+DL  A    K + + ++ +  +   T       + P WN    F I +   
Sbjct: 8   LQVKVLKAADLLAADFSGKSDPFCLLELGNDRLQTHTVYKN-LNPEWNKVFTFPIKDIHD 66

Query: 66  MQNNLTIVYSIRSTGGCFGNSDLGEVFVPVKEMLLRSNGDDDKPMSYNIT--TPGGRAKG 123
           +   +T+          F    LG+V +P+  +       D +P  Y +         KG
Sbjct: 67  VL-EVTVFDEDGDKPPDF----LGKVAIPLLSI------RDGQPNCYVLKNKDLEQAFKG 115

Query: 124 VLNVSYKF 131
           V+ +    
Sbjct: 116 VIYLEMDL 123

>d1rsya_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 143

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptogamin I
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 40.1 bits (93), Expect = 7e-05
 Identities = 20/109 (18%), Positives = 41/109 (37%), Gaps = 8/109 (7%)

Query: 6   LDITVVSASDLKTAGMFSKMNVYAVVTIFGE---SQTTSVARDCGVRPTWNHQMRFNIDE 62
           L + ++ A++L    M    + Y  V +  +      T V R   + P +N Q  F +  
Sbjct: 36  LLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKT-LNPVFNEQFTFKVPY 94

Query: 63  AAAMQNNLTI-VYSIRSTGGCFGNSDLGEVFVPVKEMLLRSNGDDDKPM 110
           +      L + VY          +  +GE  VP+  +      ++ + +
Sbjct: 95  SELGGKTLVMAVYDFDRFS---KHDIIGEFKVPMNTVDFGHVTEEWRDL 140

>d1rh8a_ b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 142

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Piccolo
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 39.5 bits (91), Expect = 1e-04
 Identities = 16/108 (14%), Positives = 31/108 (28%), Gaps = 12/108 (11%)

Query: 6   LDITVVSASDLKTAGMFSKMNVYAVVTIFGESQTTSVA---------RDCGVRPTWNHQM 56
           L I ++ A +L         + +  V +        V          R   V+ + N + 
Sbjct: 20  LIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQKSLNPEW 79

Query: 57  R--FNIDEAAAMQNNLTIVYSIRSTGGCFGNSD-LGEVFVPVKEMLLR 101
                    +  Q     +         F ++D LGEV + +      
Sbjct: 80  NQTVIYKSISMEQLMKKTLEVTVWDYDRFSSNDFLGEVLIDLSSTSHL 127

>d1ugka_ b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens) [TaxId: 9606]} Length = 138

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin IV
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.6 bits (89), Expect = 2e-04
 Identities = 26/128 (20%), Positives = 43/128 (33%), Gaps = 17/128 (13%)

Query: 3   SRALDITVVSASDLKTAGMFSK-MNVYAVVTIFGE---SQTTSVARDCGVRPTWNHQM-R 57
            +A  + +  A  L      S   + Y  +TI  E      T V R   + P ++     
Sbjct: 21  RKAFVVNIKEARGLPAMDEQSMTSDPYIKMTILPEKKHKVKTRVLRKT-LDPAFDETFTF 79

Query: 58  FNIDEAAAMQNNLTI-VYSIRSTGGCFGNSD-LGEVFVPVKEMLLRSNGDDDKPMSYNIT 115
           + I      +  L   + S       F   D +GEV +P+  + L      +  M  N  
Sbjct: 80  YGIPYTQIQELALHFTILSFDR----FSRDDIIGEVLIPLSGIEL-----SEGKMLMNRE 130

Query: 116 TPGGRAKG 123
              G + G
Sbjct: 131 IISGPSSG 138

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	336
d1wfja_	136	C2 domain protein At1g63220 {Thale cress (Arabidop	99.91
d2ep6a1	126	Multiple C2 and transmembrane domain-containing pr	99.89
d2nq3a1	133	E3 ubiquitin-protein ligase Itchy {Human (Homo sap	99.85
d1gmia_	136	Domain from protein kinase C epsilon {Rat (Rattus	99.84
d1qasa2	131	PI-specific phospholipase C isozyme D1 (PLC-D1), C	99.84
d1rlwa_	126	Domain from cytosolic phospholipase A2 {Human (Hom	99.82
d1dqva1	130	Synaptotagmin III {Rat (Rattus norvegicus) [TaxId:	99.79
d1a25a_	132	C2 domain from protein kinase c (beta) {Rat (Rattu	99.78
d2cjta1	128	Unc-13 homolog A {Rat (Rattus norvegicus) [TaxId:	99.77
d1rsya_	143	Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10	99.76
d1rh8a_	142	Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]}	99.74
d2bwqa1	125	Regulating synaptic membrane exocytosis protein, r	99.72
d1ugka_	138	Synaptotagmin IV {Human (Homo sapiens) [TaxId: 960	99.72
d1wfma_	138	Synaptotagmin XIII {Human (Homo sapiens) [TaxId: 9	99.7
d1uowa_	157	Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10	99.69
d2cm5a1	137	C2b-domain of rabphilin {Rat (Rattus norvegicus) [	99.68
d1w15a_	138	Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId:	99.67
d1bdya_	123	Domain from protein kinase C delta {Rat (Rattus no	99.61
d1dqva2	145	Synaptotagmin III {Rat (Rattus norvegicus) [TaxId:	99.6
d2zkmx2	122	Phospholipase C-beta-2 {Human (Homo sapiens) [TaxI	99.57
d1e7ua2	174	Phoshoinositide 3-kinase (PI3K) {Pig (Sus scrofa)	97.01
d2yrba1	142	Fantom {Human (Homo sapiens) [TaxId: 9606]}	95.33

>d1wfja_ b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2 domain protein At1g63220
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.91  E-value=1.2e-24  Score=178.79  Aligned_cols=124  Identities=25%  Similarity=0.455  Sum_probs=105.0

Q ss_pred             ccEEEEEEEEecCCCCCCCCCCcceEEEEEEcCcceEEEEeeCCCCCCeeeeEEEEEecchhhhcCCcEEEEEEeecCCC
Q 019724            3 SRALDITVVSASDLKTAGMFSKMNVYAVVTIFGESQTTSVARDCGVRPTWNHQMRFNIDEAAAMQNNLTIVYSIRSTGGC   82 (336)
Q Consensus         3 ~g~L~V~vi~Ak~L~~~d~~g~~dPYv~v~l~~~~~kTkv~~~~t~nP~WnE~f~F~v~~~~~~~~~~~L~v~V~d~d~~   82 (336)
                      .|+|+|+|++|++|+..+.++++||||+|++....++|++++++++||+|||+|.|.|....     ..|+|+|||+|..
T Consensus         9 ~G~L~V~v~~a~~L~~~d~~g~~Dpyv~v~~~~~~~~t~~~~~~~~nP~Wne~f~f~v~~~~-----~~L~v~V~d~d~~   83 (136)
T d1wfja_           9 HGTLEVVLVSAKGLEDADFLNNMDPYVQLTCRTQDQKSNVAEGMGTTPEWNETFIFTVSEGT-----TELKAKIFDKDVG   83 (136)
T ss_dssp             EEEEEEEEEEEEECSSCCSSCSSCCCEEEESSSCEEECCCCTTCCSSCEEEEEEEEEEESSC-----CEEEEEECCSSSC
T ss_pred             cEEEEEEEEEeeCCCCCCCCCCCCccEEEEEeeeeEEEEEEecCCCcEEEeeEEEEEEcCcc-----ceEEEEEEEecCC
Confidence            58999999999999999999999999999999988999997777899999999999997643     6799999999766


Q ss_pred             CCCcccEEEEEeceeeeccCCCCCCCCeeeeeeCCCCCcceEEEEEEEEcccC
Q 019724           83 FGNSDLGEVFVPVKEMLLRSNGDDDKPMSYNITTPGGRAKGVLNVSYKFGPSS  135 (336)
Q Consensus        83 ~~d~~LG~~~v~L~~l~~~~~~~~~~~~~~~l~~~~g~~~G~L~lsl~~~~~~  135 (336)
                      .+|++||+++|+|.+++.....   ...|+.+.+ +++.+|+|+|+|+|.+..
T Consensus        84 ~~d~~iG~~~i~L~~l~~~~~~---~~~~~~l~~-~~~~~G~i~l~l~~~p~~  132 (136)
T d1wfja_          84 TEDDAVGEATIPLEPVFVEGSI---PPTAYNVVK-DEEYKGEIWVALSFKPSG  132 (136)
T ss_dssp             TTTCCSEEEEEESHHHHHHSEE---EEEEEEEEE-TTEEEEEEEEEEEEEECC
T ss_pred             CCCCEEEEEEEEhHHhcccCCc---CcEEEEecC-CCccCEEEEEEEEEEeCC
Confidence            6899999999999998762221   235667653 467789999999998644

>d2ep6a1 b.7.1.1 (A:92-217) Multiple C2 and transmembrane domain-containing protein 2, MCTP2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Multiple C2 and transmembrane domain-containing protein 2, MCTP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=1.7e-23  Score=169.58  Aligned_cols=120  Identities=18%  Similarity=0.237  Sum_probs=99.4

Q ss_pred             ccEEEEEEEEecCCCCCCCCCCcceEEEEEEcCcceEEEEeeCCCCCCeeeeEEEEEecchhhhcCCcEEEEEEeecCCC
Q 019724            3 SRALDITVVSASDLKTAGMFSKMNVYAVVTIFGESQTTSVARDCGVRPTWNHQMRFNIDEAAAMQNNLTIVYSIRSTGGC   82 (336)
Q Consensus         3 ~g~L~V~vi~Ak~L~~~d~~g~~dPYv~v~l~~~~~kTkv~~~~t~nP~WnE~f~F~v~~~~~~~~~~~L~v~V~d~d~~   82 (336)
                      .|+|+|+|++|++|...+..+++||||+|+++..+++|++++ ++.||+|||+|.|.+....     ..|+|+|||++..
T Consensus         5 ~G~L~V~v~~A~~L~~~d~~g~~Dpyv~v~~~~~~~~T~~~~-~t~nP~wne~f~f~v~~~~-----~~L~i~V~d~~~~   78 (126)
T d2ep6a1           5 VGILQVKVLKAADLLAADFSGKSDPFCLLELGNDRLQTHTVY-KNLNPEWNKVFTFPIKDIH-----DVLEVTVFDEDGD   78 (126)
T ss_dssp             SEEEEEEEEEEESCCCSSSSSCCCEEEEEEETTEEEECCCCS-SCSSCCCCEEEEEEESCTT-----CEEEEEEEEEETT
T ss_pred             cEEEEEEEEEeECCCCCCCCCCcCeEEEEEcCCeEEEEEeeC-CceeEEEEEEEEEEEeccC-----ceeEEEEEEccCC
Confidence            689999999999999999999999999999999999999954 5899999999999997643     6899999999666


Q ss_pred             CCCcccEEEEEeceeeeccCCCCCCCCeeeeeeCCCCCcceEEEEEEEEc
Q 019724           83 FGNSDLGEVFVPVKEMLLRSNGDDDKPMSYNITTPGGRAKGVLNVSYKFG  132 (336)
Q Consensus        83 ~~d~~LG~~~v~L~~l~~~~~~~~~~~~~~~l~~~~g~~~G~L~lsl~~~  132 (336)
                      .+|++||+++|+|.++.. +.   ..|.++..++.+++.+|+|+|+|++.
T Consensus        79 ~~d~~lG~~~i~l~~l~~-~~---~~~~~l~~~~~~~~~~G~i~l~~~~i  124 (126)
T d2ep6a1          79 KPPDFLGKVAIPLLSIRD-GQ---PNCYVLKNKDLEQAFKGVIYLEMDLI  124 (126)
T ss_dssp             EEEEECCBCEEEGGGCCS-SC---CEECCCBCSCTTSCCSSEEEEEEEEE
T ss_pred             cCcceEEEEEEEHHHCCC-CC---ceEEEccccCCCCceeEEEEEEEEEE
Confidence            678999999999999865 11   12333333334566789999999875

>d2nq3a1 b.7.1.1 (A:13-145) E3 ubiquitin-protein ligase Itchy {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: E3 ubiquitin-protein ligase Itchy
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.85  E-value=2.7e-21  Score=158.21  Aligned_cols=123  Identities=18%  Similarity=0.193  Sum_probs=97.1

Q ss_pred             ccEEEEEEEEecCCCCCCCCCCcceEEEEEEcCcceEEEEeeCCCCCCeeeeEEEEEecchhhhcCCcEEEEEEeecCCC
Q 019724            3 SRALDITVVSASDLKTAGMFSKMNVYAVVTIFGESQTTSVARDCGVRPTWNHQMRFNIDEAAAMQNNLTIVYSIRSTGGC   82 (336)
Q Consensus         3 ~g~L~V~vi~Ak~L~~~d~~g~~dPYv~v~l~~~~~kTkv~~~~t~nP~WnE~f~F~v~~~~~~~~~~~L~v~V~d~d~~   82 (336)
                      .+.|+|+|++|++|+..+..+++||||+|+++++.+||+++ +++.||+|||.|.|.+...      ..|+|+|||+|..
T Consensus         5 ~~~L~v~v~~A~~~~~~~~~~~~dpyv~v~~~~~~~kT~v~-~~t~nP~wne~f~f~~~~~------~~l~~~V~d~d~~   77 (133)
T d2nq3a1           5 KSQLQITVISAKLKENKKNWFGPSPYVEVTVDGQSKKTEKC-NNTNSPKWKQPLTVIVTPV------SKLHFRVWSHQTL   77 (133)
T ss_dssp             CEEEEEEEEEEEECCCC--CCCCCEEEEEEETTEEEECCCC-SSCSSCEEEEEEEEEECTT------CEEEEEEEECCSS
T ss_pred             ceEEEEEEEEeECCCcCCCCCCcCeEEEEEECCeEEeeEEE-EecccEEEcceEEEEEEec------ceeEEEEEEccCC
Confidence            47899999999999988888899999999999999999995 5689999999999998643      5799999999766


Q ss_pred             CCCcccEEEEEeceeeeccCCCCC-CCCeeeeeeC--CCCCcceEEEEEEEEc
Q 019724           83 FGNSDLGEVFVPVKEMLLRSNGDD-DKPMSYNITT--PGGRAKGVLNVSYKFG  132 (336)
Q Consensus        83 ~~d~~LG~~~v~L~~l~~~~~~~~-~~~~~~~l~~--~~g~~~G~L~lsl~~~  132 (336)
                      .+|++||++.|+|.+++....+.. ..+.++.+..  ......|+|+|.|...
T Consensus        78 ~~d~~iG~~~i~L~~l~~~~~~~~~~~~~~l~l~~~~~~~~~~G~L~v~l~~~  130 (133)
T d2nq3a1          78 KSDVLLGTAALDIYETLKSNNMKLEEVVVTLQLGGDKEPTETIGDLSICLDGL  130 (133)
T ss_dssp             SCCEEEEEEEEEHHHHHHHTTTEESSEEEEEEEEESSCTTSEEEEEEEEEESE
T ss_pred             CCCceEEEEEEEHHHhhhhcCCceeeEEEEEecCCCCCCceEEEEEEEEEeeE
Confidence            689999999999999876433322 1334455443  3345579998888754

>d1gmia_ b.7.1.1 (A:) Domain from protein kinase C epsilon {Rat (Rattus rattus) [TaxId: 10117]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from protein kinase C epsilon
species: Rat (Rattus rattus) [TaxId: 10117]

Probab=99.84  E-value=5.6e-21  Score=156.81  Aligned_cols=120  Identities=13%  Similarity=0.156  Sum_probs=96.5

Q ss_pred             CCccEEEEEEEEecCCCCCC-----------CCCCcceEEEEEEcCcc-eEEEEeeCCCCCCeeeeEEEEEecchhhhcC
Q 019724            1 MGSRALDITVVSASDLKTAG-----------MFSKMNVYAVVTIFGES-QTTSVARDCGVRPTWNHQMRFNIDEAAAMQN   68 (336)
Q Consensus         1 m~~g~L~V~vi~Ak~L~~~d-----------~~g~~dPYv~v~l~~~~-~kTkv~~~~t~nP~WnE~f~F~v~~~~~~~~   68 (336)
                      |-+|.|+|+|++|++|+..+           ..+++||||+|+++... .||++ ++++.||.|||+|.|.+.+.     
T Consensus         3 ~~~G~L~v~I~~A~~L~~~~~~~~~~~~~~~~~~~~DPYv~v~l~~~~~~~T~~-~~~t~~P~Wne~f~f~v~~~-----   76 (136)
T d1gmia_           3 VFNGLLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDDSRIGQTAT-KQKTNSPAWHDEFVTDVCNG-----   76 (136)
T ss_dssp             CEEEEEEEEEEEEESCCCCHHHHCC-CCSSCCCCCCCEEEEEEETTEEEEECCC-CSSCSSCEEEEEEEEEEEEE-----
T ss_pred             cEEEEEEEEEEEeECCCcccccccccccccCCCCCcCcEEEEEeCCCcCcEeeE-EcCCCCccCccEEEEEEecC-----
Confidence            34789999999999998643           34678999999998876 57777 56689999999999999653     


Q ss_pred             CcEEEEEEeecCCCCCCcccEEEEEeceeeeccCCCCCCCCeeeeeeCCCCCcceEEEEEEEEccc
Q 019724           69 NLTIVYSIRSTGGCFGNSDLGEVFVPVKEMLLRSNGDDDKPMSYNITTPGGRAKGVLNVSYKFGPS  134 (336)
Q Consensus        69 ~~~L~v~V~d~d~~~~d~~LG~~~v~L~~l~~~~~~~~~~~~~~~l~~~~g~~~G~L~lsl~~~~~  134 (336)
                       ..|+|+|||++...+|++||+++|+|++|+.+..  .....|+.|.     ..|+|+|.|+|.+.
T Consensus        77 -~~l~i~V~d~~~~~~d~~iG~~~i~l~~l~~~~~--~~~~~w~~L~-----p~G~v~l~v~~~~~  134 (136)
T d1gmia_          77 -RKIELAVFHDAPIGYDDFVANCTIQFEELLQNGS--RHFEDWIDLE-----PEGKVYVIIDLSGS  134 (136)
T ss_dssp             -CEEEEEEEECCSSSSCEEEEEEEEEHHHHTSTTC--SEEEEEEECB-----SSCEEEEEEEEEEE
T ss_pred             -CceEEEEEEecCCCCceeEEEEEEEHHHhhhcCC--cceeEEEeCC-----CCcEEEEEEEEEeC
Confidence             6899999999666689999999999999987322  2233577774     47999999998753

>d1qasa2 b.7.1.1 (A:626-756) PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.84  E-value=3e-20  Score=151.32  Aligned_cols=118  Identities=17%  Similarity=0.299  Sum_probs=91.8

Q ss_pred             cEEEEEEEEecCCCC--CCCCCCcceEEEEEEcC-----cceEEEEeeCCCCCCeeeeEEEEEecchhhhcCCcEEEEEE
Q 019724            4 RALDITVVSASDLKT--AGMFSKMNVYAVVTIFG-----ESQTTSVARDCGVRPTWNHQMRFNIDEAAAMQNNLTIVYSI   76 (336)
Q Consensus         4 g~L~V~vi~Ak~L~~--~d~~g~~dPYv~v~l~~-----~~~kTkv~~~~t~nP~WnE~f~F~v~~~~~~~~~~~L~v~V   76 (336)
                      .+|+|+|++|++|..  .+..+++||||+|+|.+     .++||+++++++.||+|||+|.|.+....    ...|.|+|
T Consensus         4 ~~l~V~Vi~a~~L~~~~~~~~~~~DPyV~v~l~g~~~~~~~~~T~~v~~~~~nP~wne~f~f~~~~~~----~~~L~~~V   79 (131)
T d1qasa2           4 ERLRVRIISGQQLPKVNKNKNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWDMEFEFEVTVPD----LALVRFMV   79 (131)
T ss_dssp             EEEEEEEEEEESCCCCC-----CCCEEEEEEEESSTTTCEEEECCCCSSCSSSCEEEEEEEEEESCGG----GCEEEEEE
T ss_pred             EEEEEEEEEeeCCCCCCCCCCCCcCeEEEEEEccCCCCcEEEEEEEEecccCCceEEEEEEEEEEcch----hceEEEEE
Confidence            579999999999964  45567899999999953     34888887777789999999999987654    36799999


Q ss_pred             eecCCCCCCcccEEEEEeceeeeccCCCCCCCCeeeeeeCCCCCc--ceEEEEEEEEc
Q 019724           77 RSTGGCFGNSDLGEVFVPVKEMLLRSNGDDDKPMSYNITTPGGRA--KGVLNVSYKFG  132 (336)
Q Consensus        77 ~d~d~~~~d~~LG~~~v~L~~l~~~~~~~~~~~~~~~l~~~~g~~--~G~L~lsl~~~  132 (336)
                      ||+|...+|++||++.|+|+++..       ...++.|.+..++.  .++|.++|++.
T Consensus        80 ~D~d~~~~d~~iG~~~i~l~~l~~-------g~~~~~L~~~~g~~~~~~~L~v~i~~~  130 (131)
T d1qasa2          80 EDYDSSSKNDFIGQSTIPWNSLKQ-------GYRHVHLLSKNGDQHPSATLFVKISIQ  130 (131)
T ss_dssp             EECCTTTCCEEEEEEEEEGGGBCC-------EEEEEEEECTTSCEEEEEEEEEEEEEE
T ss_pred             EEecCCCCCcEEEEEEEEEeccCC-------CCEEEECCCCCcCCCCCCEEEEEEEEE
Confidence            999766689999999999998865       13468888766654  46777777764

>d1rlwa_ b.7.1.1 (A:) Domain from cytosolic phospholipase A2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from cytosolic phospholipase A2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.82  E-value=1.9e-20  Score=151.07  Aligned_cols=118  Identities=17%  Similarity=0.305  Sum_probs=94.3

Q ss_pred             ccEEEEEEEEecCCCCC---CCCCCcceEEEEEEcC---cceEEEEeeCCCCCCeeeeEEEEEecchhhhcCCcEEEEEE
Q 019724            3 SRALDITVVSASDLKTA---GMFSKMNVYAVVTIFG---ESQTTSVARDCGVRPTWNHQMRFNIDEAAAMQNNLTIVYSI   76 (336)
Q Consensus         3 ~g~L~V~vi~Ak~L~~~---d~~g~~dPYv~v~l~~---~~~kTkv~~~~t~nP~WnE~f~F~v~~~~~~~~~~~L~v~V   76 (336)
                      +.+|+|+|++|+||+..   ++.+++||||++.+..   ..+||++ ++++.||+|||+|.|.+....    ...|+|+|
T Consensus         2 s~~l~V~v~~a~~L~~~~~~d~~~~~Dpyv~v~l~~~~~~~~~T~~-~~~t~nP~wne~f~f~i~~~~----~~~L~v~V   76 (126)
T d1rlwa_           2 SHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRH-FNNDINPVWNETFEFILDPNQ----ENVLEITL   76 (126)
T ss_dssp             CEEEEEEEEEEESCCSCHHHHHHCCCCEEEEEECTTSTTCCEECCC-CTTCSSCEEEEEEEEEECTTS----CCEEEEEE
T ss_pred             CcEEEEEEEEccCCCCccccccCCCCCcEEEEEECCcccceeEeee-cCCCccceeceeeeecccCcc----cCcEEEEE
Confidence            57899999999999864   3457899999999975   3478888 456899999999999996543    46899999


Q ss_pred             eecCCCCCCcccEEEEEeceeeeccCCCCCCCCeeeeeeCCCCCcceEEEEEEEEcc
Q 019724           77 RSTGGCFGNSDLGEVFVPVKEMLLRSNGDDDKPMSYNITTPGGRAKGVLNVSYKFGP  133 (336)
Q Consensus        77 ~d~d~~~~d~~LG~~~v~L~~l~~~~~~~~~~~~~~~l~~~~g~~~G~L~lsl~~~~  133 (336)
                      ||+ +..+|++||++.|+|++|.. +..   ...||.|.+   ...|+|+|+|++.+
T Consensus        77 ~d~-d~~~d~~lG~~~i~L~~l~~-~~~---~~~~~~L~~---~~~g~i~~~l~~~~  125 (126)
T d1rlwa_          77 MDA-NYVMDETLGTATFTVSSMKV-GEK---KEVPFIFNQ---VTEMVLEMSLEVAS  125 (126)
T ss_dssp             EEC-CSSCCEEEEEEEEEGGGSCT-TCE---EEEEEEETT---TEEEEEEEEEECCC
T ss_pred             EEC-CCCCCCeEEEEEEEHHHccC-CCe---EEEEEEccC---CCeEEEEEEEEEEe
Confidence            999 55688999999999999865 221   346888853   45688988888753

>d1dqva1 b.7.1.2 (A:295-424) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin III
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.79  E-value=4.2e-19  Score=144.21  Aligned_cols=110  Identities=18%  Similarity=0.248  Sum_probs=86.5

Q ss_pred             CccEEEEEEEEecCCCCCCCCCCcceEEEEEEcCc---ceEEEEeeCCCCCCeeeeEEEEEecchhhhcCCcEEEEEEee
Q 019724            2 GSRALDITVVSASDLKTAGMFSKMNVYAVVTIFGE---SQTTSVARDCGVRPTWNHQMRFNIDEAAAMQNNLTIVYSIRS   78 (336)
Q Consensus         2 ~~g~L~V~vi~Ak~L~~~d~~g~~dPYv~v~l~~~---~~kTkv~~~~t~nP~WnE~f~F~v~~~~~~~~~~~L~v~V~d   78 (336)
                      ..++|+|+|++|++|...+..+++||||+|++...   ++||+++ +++.||+|||+|.|.|....+  ....|+|+|||
T Consensus        16 ~~~~L~V~V~~a~~L~~~~~~g~~dpyv~v~l~~~~~~~~kT~v~-~~t~~P~wne~f~f~v~~~~~--~~~~L~v~V~d   92 (130)
T d1dqva1          16 GSDQLVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVH-RKTLNPIFNETFQFSVPLAEL--AQRKLHFSVYD   92 (130)
T ss_dssp             SSCEEEEEEEEEECCCCCSTTSCCCEEEEEECTTSTTSCEECCCC-CSCSSCEEEEEEEEECCGGGG--SSCCCEEEEEE
T ss_pred             CCCEEEEEEEeeeCCccccCCCCcceEEEEEEccCCCceEeceeE-cCCCCeeeeeEEEEEEchHHc--CCCeEEEEEEE
Confidence            46789999999999999988899999999999543   3899984 568999999999999876532  34679999999


Q ss_pred             cCCCCCCcccEEEEEeceeeeccCCCCCCCCeeeeeeC
Q 019724           79 TGGCFGNSDLGEVFVPVKEMLLRSNGDDDKPMSYNITT  116 (336)
Q Consensus        79 ~d~~~~d~~LG~~~v~L~~l~~~~~~~~~~~~~~~l~~  116 (336)
                      +|...+|++||++.|++...+.....  +...|+.|.+
T Consensus        93 ~~~~~~d~~iG~~~i~~~~~l~~~~~--~~~~W~~L~~  128 (130)
T d1dqva1          93 FDRFSRHDLIGQVVLDNLLELAEQPP--DRPLWRDILE  128 (130)
T ss_dssp             CCSSSCCCEEEEEECCCTTGGGSSCS--SCCCCEECBC
T ss_pred             cCCCCCCceEEEEEECchhhhhcCCC--CCcEEEeccc
Confidence            97667899999999986544431211  2346788764

>d1a25a_ b.7.1.2 (A:) C2 domain from protein kinase c (beta) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2 domain from protein kinase c (beta)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.78  E-value=4.7e-19  Score=144.14  Aligned_cols=105  Identities=18%  Similarity=0.294  Sum_probs=86.6

Q ss_pred             ccEEEEEEEEecCCCCCCCCCCcceEEEEEEcC-----cceEEEEeeCCCCCCeeeeEEEEEecchhhhcCCcEEEEEEe
Q 019724            3 SRALDITVVSASDLKTAGMFSKMNVYAVVTIFG-----ESQTTSVARDCGVRPTWNHQMRFNIDEAAAMQNNLTIVYSIR   77 (336)
Q Consensus         3 ~g~L~V~vi~Ak~L~~~d~~g~~dPYv~v~l~~-----~~~kTkv~~~~t~nP~WnE~f~F~v~~~~~~~~~~~L~v~V~   77 (336)
                      .++|+|+|++|++|+..+..+.+||||+|+|..     .++||+++ +++.||+|||+|.|.+....   ....|+|+||
T Consensus        14 ~~~L~V~V~~a~~L~~~d~~g~~DpYv~v~l~~~~~~~~~~kT~v~-~~t~nP~wne~f~f~v~~~~---~~~~L~i~V~   89 (132)
T d1a25a_          14 REVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTI-KCSLNPEWNETFRFQLKESD---KDRRLSVEIW   89 (132)
T ss_dssp             SSEEEEEEEEEESCCCCSTTSCCCEEEEEEEESCTTCSSCEECCCC-SSCSSCEEEEEEEEECCSGG---GGCEEEEEEE
T ss_pred             CCEEEEEEEeeeCCCCCCCCCCcCeEEEEEEccCCCCccccEEeee-cCCCCCccceEEEEEeEccc---cCCEEeEEEE
Confidence            578999999999999999889999999999943     34899985 46899999999999987543   2357999999


Q ss_pred             ecCCCCCCcccEEEEEeceeeeccCCCCCCCCeeeeeeC
Q 019724           78 STGGCFGNSDLGEVFVPVKEMLLRSNGDDDKPMSYNITT  116 (336)
Q Consensus        78 d~d~~~~d~~LG~~~v~L~~l~~~~~~~~~~~~~~~l~~  116 (336)
                      |+|...+|++||++.|+|.+|..  ..   ...||.|..
T Consensus        90 d~d~~~~d~~iG~~~i~l~~l~~--~~---~~~W~~L~~  123 (132)
T d1a25a_          90 DWDLTSRNDFMGSLSFGISELQK--AG---VDGWFKLLS  123 (132)
T ss_dssp             ECCSSSCCEEEEEEEEEHHHHTT--CC---EEEEEECBC
T ss_pred             ecCCCCCCcEeEEEEEeHHHcCC--CC---CCeEEECCC
Confidence            99777789999999999999864  22   235788864

>d2cjta1 b.7.1.1 (A:1-128) Unc-13 homolog A {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Unc-13 homolog A
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.77  E-value=8.2e-19  Score=142.31  Aligned_cols=100  Identities=19%  Similarity=0.352  Sum_probs=82.2

Q ss_pred             cEEEEEEEEecCCCCCCCCCCcceEEEEEEcCcceEEEEeeCCCCCCeeeeEEEEEecchhhhcCCcEEEEEEeecCCCC
Q 019724            4 RALDITVVSASDLKTAGMFSKMNVYAVVTIFGESQTTSVARDCGVRPTWNHQMRFNIDEAAAMQNNLTIVYSIRSTGGCF   83 (336)
Q Consensus         4 g~L~V~vi~Ak~L~~~d~~g~~dPYv~v~l~~~~~kTkv~~~~t~nP~WnE~f~F~v~~~~~~~~~~~L~v~V~d~d~~~   83 (336)
                      ..|+|+|++|++|...+   ++||||+|++++.+.+|++++  +.||+|||+|.|.+....     ..|.|+|||+ +..
T Consensus         2 ~~L~V~v~~a~~l~~~~---~~dpYv~l~~~~~k~~T~~~k--~~nP~Wne~f~f~v~~~~-----~~L~v~V~d~-~~~   70 (128)
T d2cjta1           2 SLLCVGVKKAKFDGAQE---KFNTYVTLKVQNVKSTTIAVR--GSQPSWEQDFMFEINRLD-----LGLTVEVWNK-GLI   70 (128)
T ss_dssp             EEEEEEEEEEECSSCGG---GCEEEEEEEETTEEEECCCEE--SSSCEEEEEEEEEECCCS-----SEEEEEEEEC-CSS
T ss_pred             eEEEEEEEEEECCCCCC---CcCeEEEEEeCCEEEEEEEec--CCCCeEEEEEEEeecccc-----ceEEEEEEeC-CCc
Confidence            57999999999999876   689999999999889998864  469999999999997653     6799999999 556


Q ss_pred             CCcccEEEEEeceeeeccCCCCCCCCeeeeeeC
Q 019724           84 GNSDLGEVFVPVKEMLLRSNGDDDKPMSYNITT  116 (336)
Q Consensus        84 ~d~~LG~~~v~L~~l~~~~~~~~~~~~~~~l~~  116 (336)
                      +|++||++.|+|++|.......  ...||.|..
T Consensus        71 ~d~~lG~~~I~L~~l~~~~~~~--~~~W~~L~~  101 (128)
T d2cjta1          71 WDTMVGTVWIPLRTIRQSNEEG--PGEWLTLDS  101 (128)
T ss_dssp             CEEEEEEEEEEGGGSCBCSSCC--CCEEEECBC
T ss_pred             CCcceEEEEEEehhhccCCCCC--CCeeEECCc
Confidence            8999999999999997633222  335777754

>d1rsya_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptogamin I
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.76  E-value=2.3e-18  Score=141.96  Aligned_cols=106  Identities=17%  Similarity=0.242  Sum_probs=86.6

Q ss_pred             ccEEEEEEEEecCCCCCCCCCCcceEEEEEEcC---cceEEEEeeCCCCCCeeeeEEEEEecchhhhcCCcEEEEEEeec
Q 019724            3 SRALDITVVSASDLKTAGMFSKMNVYAVVTIFG---ESQTTSVARDCGVRPTWNHQMRFNIDEAAAMQNNLTIVYSIRST   79 (336)
Q Consensus         3 ~g~L~V~vi~Ak~L~~~d~~g~~dPYv~v~l~~---~~~kTkv~~~~t~nP~WnE~f~F~v~~~~~~~~~~~L~v~V~d~   79 (336)
                      ..+|+|+|++|+||+..+..+.+||||+|++..   ..+||++ ++++.||+|||+|.|.|....  .....|+|+|||+
T Consensus        33 ~~~L~V~V~~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~kT~~-~~~t~~P~wne~f~f~i~~~~--l~~~~L~i~V~d~  109 (143)
T d1rsya_          33 NNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKV-HRKTLNPVFNEQFTFKVPYSE--LGGKTLVMAVYDF  109 (143)
T ss_dssp             TTEEEEEEEEEESCCCCSTTSCCCEEEEEEEETTCCSCEECCC-CTTCSSCEEEEEEEECCCHHH--HTTCEEEEEEEEC
T ss_pred             CCEEEEEEEEccCCCCCCCCCCCCeEEEEEEcCCCCeeEEEEE-eccccCcceeeeeEEEEEeec--cCCceEEEEEEEc
Confidence            568999999999999998889999999999954   3389998 456899999999999986543  2357899999999


Q ss_pred             CCCCCCcccEEEEEeceeeeccCCCCCCCCeeeeee
Q 019724           80 GGCFGNSDLGEVFVPVKEMLLRSNGDDDKPMSYNIT  115 (336)
Q Consensus        80 d~~~~d~~LG~~~v~L~~l~~~~~~~~~~~~~~~l~  115 (336)
                      +...++++||++.|+|.++.. ..   ....||.|.
T Consensus       110 d~~~~~~~iG~~~i~L~~~~~-~~---~~~~W~~L~  141 (143)
T d1rsya_         110 DRFSKHDIIGEFKVPMNTVDF-GH---VTEEWRDLQ  141 (143)
T ss_dssp             CSSSCCEEEEEEEEEGGGCCC-SS---CEEEEEECB
T ss_pred             CCCCCCcEEEEEEEEchhccC-CC---CCccEEeCC
Confidence            766688999999999999864 22   134678775

>d1rh8a_ b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Piccolo
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.74  E-value=5.4e-19  Score=145.23  Aligned_cols=109  Identities=16%  Similarity=0.206  Sum_probs=86.3

Q ss_pred             ccEEEEEEEEecCCCCCCCCCCcceEEEEEEcCcc--------------eEEEEeeCCCCCCeeeeEEEEEecchhhhcC
Q 019724            3 SRALDITVVSASDLKTAGMFSKMNVYAVVTIFGES--------------QTTSVARDCGVRPTWNHQMRFNIDEAAAMQN   68 (336)
Q Consensus         3 ~g~L~V~vi~Ak~L~~~d~~g~~dPYv~v~l~~~~--------------~kTkv~~~~t~nP~WnE~f~F~v~~~~~~~~   68 (336)
                      .++|+|+|++|++|...+..+.+||||+|++....              +||++++ ++.||+|||+|.|.+.... +..
T Consensus        17 ~~~L~V~V~~A~~L~~~d~~g~~DpyV~v~l~~~~~~~~~~~~~~~~~~~kT~v~~-~t~nP~wne~f~f~~~~~~-~~~   94 (142)
T d1rh8a_          17 LGNLIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQ-KSLNPEWNQTVIYKSISME-QLM   94 (142)
T ss_dssp             TTEEEEEEEEEESCCCCSSSSCSCCEEEEEETTSSCCCEECCCCCHHHHTTTTTTH-HHHSCEEEEEEEECSCCHH-HHT
T ss_pred             CCEEEEEEEEeECCCCcCCCCCCCcCEEEEEecCcccccccccCCCceeeeccCCc-CCCCceeEEEEEEeeeccc-ccC
Confidence            47899999999999999989999999999995322              5788754 4789999999999843321 224


Q ss_pred             CcEEEEEEeecCCCCCCcccEEEEEeceeeeccCCCCCCCCeeeeeeCC
Q 019724           69 NLTIVYSIRSTGGCFGNSDLGEVFVPVKEMLLRSNGDDDKPMSYNITTP  117 (336)
Q Consensus        69 ~~~L~v~V~d~d~~~~d~~LG~~~v~L~~l~~~~~~~~~~~~~~~l~~~  117 (336)
                      ...|.|+|||+|...+|++||++.|+|.++.. ...   ...||.|..+
T Consensus        95 ~~~L~i~V~d~d~~~~~~~lG~~~i~L~~l~~-~~~---~~~W~~L~~~  139 (142)
T d1rh8a_          95 KKTLEVTVWDYDRFSSNDFLGEVLIDLSSTSH-LDN---TPRWYPLKEQ  139 (142)
T ss_dssp             TCEEEEEEEEECSSSCEEEEEEEEEETTSCGG-GTT---CCEEEECBCC
T ss_pred             CCEEEEEEEEecCCCCCeeeEEEEEEhHHcCC-CCC---ceEEEECcCc
Confidence            57899999999666688999999999999876 222   3468888754

>d2bwqa1 b.7.1.2 (A:729-853) Regulating synaptic membrane exocytosis protein, rim2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Regulating synaptic membrane exocytosis protein, rim2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.72  E-value=1.9e-17  Score=133.21  Aligned_cols=105  Identities=17%  Similarity=0.324  Sum_probs=80.2

Q ss_pred             CccEEEEEEEEecCCCCCCCCCCcceEEEEEEcCc-----ceEEEEeeCCCCCCeeeeEEEEE-ecchhhhcCCcEEEEE
Q 019724            2 GSRALDITVVSASDLKTAGMFSKMNVYAVVTIFGE-----SQTTSVARDCGVRPTWNHQMRFN-IDEAAAMQNNLTIVYS   75 (336)
Q Consensus         2 ~~g~L~V~vi~Ak~L~~~d~~g~~dPYv~v~l~~~-----~~kTkv~~~~t~nP~WnE~f~F~-v~~~~~~~~~~~L~v~   75 (336)
                      ..++|+|+|++|+||...+..+.+||||+|++...     ++||+++ +++.||+|||+|.|. +....  .....|.|+
T Consensus        12 ~~~~L~V~V~~a~~L~~~~~~~~~dpyVkv~l~~~~~~~~~~kT~~~-~~t~~P~wne~f~f~~~~~~~--l~~~~L~i~   88 (125)
T d2bwqa1          12 VGHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTV-KKTLEPKWNQTFIYSPVHRRE--FRERMLEIT   88 (125)
T ss_dssp             TTTEEEEEEEEEESCCCCTTSCCBCEEEEEEEESSCSGGGEEECCCC-SSBSSCEEEEEEEECSCCGGG--GGGCEEEEE
T ss_pred             CCCEEEEEEEEeECCCCcCCCCCCCEEEEEEEeCCCCCccccccCEE-cCCCCCEEccEEEEeeeChhh--cCCCEEEEE
Confidence            35789999999999998888899999999999532     2789985 568999999999997 44332  234689999


Q ss_pred             EeecCCCC--CCcccEEEEEeceeeeccCCCCCCCCeeeee
Q 019724           76 IRSTGGCF--GNSDLGEVFVPVKEMLLRSNGDDDKPMSYNI  114 (336)
Q Consensus        76 V~d~d~~~--~d~~LG~~~v~L~~l~~~~~~~~~~~~~~~l  114 (336)
                      |||+++..  ++++||++.|+|+++..  +.   ...||.|
T Consensus        89 v~d~~~~~~~~~~~iG~~~i~l~~~~~--~~---~~~Wy~L  124 (125)
T d2bwqa1          89 LWDQARVREEESEFLGEILIELETALL--DD---EPHWYKL  124 (125)
T ss_dssp             EEEC-------CEEEEEEEEEGGGCCC--SS---CEEEEEC
T ss_pred             EEECCCCCCCCCeeEEEEEEEchhcCC--CC---CCEEEeC
Confidence            99996543  45699999999999875  21   2357776

>d1ugka_ b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin IV
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.72  E-value=3.9e-17  Score=133.76  Aligned_cols=95  Identities=22%  Similarity=0.321  Sum_probs=77.5

Q ss_pred             ccEEEEEEEEecCCCCCCCCCC-cceEEEEEEcCc---ceEEEEeeCCCCCCeeeeEEEEE-ecchhhhcCCcEEEEEEe
Q 019724            3 SRALDITVVSASDLKTAGMFSK-MNVYAVVTIFGE---SQTTSVARDCGVRPTWNHQMRFN-IDEAAAMQNNLTIVYSIR   77 (336)
Q Consensus         3 ~g~L~V~vi~Ak~L~~~d~~g~-~dPYv~v~l~~~---~~kTkv~~~~t~nP~WnE~f~F~-v~~~~~~~~~~~L~v~V~   77 (336)
                      ..+|+|+|++|++|+..+..+. +||||+|+|...   .+||+++ ++++||+|||+|.|. +....  .....|+|+||
T Consensus        21 ~~~L~V~V~~a~~L~~~d~~~~~~dpyV~v~l~~~~~~~~kT~v~-~~t~nP~wne~f~f~~~~~~~--l~~~~L~~~V~   97 (138)
T d1ugka_          21 RKAFVVNIKEARGLPAMDEQSMTSDPYIKMTILPEKKHKVKTRVL-RKTLDPAFDETFTFYGIPYTQ--IQELALHFTIL   97 (138)
T ss_dssp             GTEEEEEEEEEESCCCCBTTTTBCEEEEEEEEETTTCSEEECCCC-SSCSSCEEEEEEEEECCCSTT--GGGCEEEEEEE
T ss_pred             CCEEEEEEEEecCCCCCCCCCCccceEEEEEEcCCCCEeEeCeeE-eCCCCCceeeEEEEeeeCHHH--cccceEEEEEE
Confidence            5689999999999998876654 799999999543   4889985 568999999999997 44332  22468999999


Q ss_pred             ecCCCCCCcccEEEEEeceeeec
Q 019724           78 STGGCFGNSDLGEVFVPVKEMLL  100 (336)
Q Consensus        78 d~d~~~~d~~LG~~~v~L~~l~~  100 (336)
                      |+|+..+|++||++.|+|+++..
T Consensus        98 d~d~~~~~~~iG~~~i~L~~~~~  120 (138)
T d1ugka_          98 SFDRFSRDDIIGEVLIPLSGIEL  120 (138)
T ss_dssp             EECSSCCCCCCEEEEEECTTCCC
T ss_pred             ECCCCCCCcEEEEEEEEcccccC
Confidence            99777789999999999999854

>d1wfma_ b.7.1.2 (A:) Synaptotagmin XIII {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin XIII
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.70  E-value=5.5e-17  Score=132.82  Aligned_cols=105  Identities=14%  Similarity=0.184  Sum_probs=83.7

Q ss_pred             CccEEEEEEEEecCCCCCCCCCCcceEEEEEEcCcc----eEEEEeeCCCCCCeeeeEEEEEecchhhhcCCcEEEEEEe
Q 019724            2 GSRALDITVVSASDLKTAGMFSKMNVYAVVTIFGES----QTTSVARDCGVRPTWNHQMRFNIDEAAAMQNNLTIVYSIR   77 (336)
Q Consensus         2 ~~g~L~V~vi~Ak~L~~~d~~g~~dPYv~v~l~~~~----~kTkv~~~~t~nP~WnE~f~F~v~~~~~~~~~~~L~v~V~   77 (336)
                      ..++|+|+|++|++|..   .+.+||||+|+|.+..    +||++ ++++.||+|||+|.|.|....  .....|+|+||
T Consensus        24 ~~~~L~V~v~~a~~L~~---~g~~dpyVkv~l~~~~~~~~~kT~v-~~~~~~P~wne~f~f~v~~~~--l~~~~L~~~V~   97 (138)
T d1wfma_          24 QKAELFVTRLEAVTSNH---DGGCDCYVQGSVANRTGSVEAQTAL-KKRQLHTTWEEGLVLPLAEEE--LPTATLTLTLR   97 (138)
T ss_dssp             TTTEEEEEEEEEECCCC---SSCCCEEEEEEEEETTEEEEEECCC-CCCCSSEECSSCEEEECCTTS--STTCEEEEEEE
T ss_pred             CCCEEEEEEEEcCCCCC---CCCcCcEEEEEECCCCCccceeeeE-ECCCCCceEeeeEEEEeeehh--ccceEEEEEEe
Confidence            35789999999999953   4678999999996543    78888 456899999999999986543  23578999999


Q ss_pred             ecCCCCCCcccEEEEEeceeeeccCCCCCCCCeeeeeeC
Q 019724           78 STGGCFGNSDLGEVFVPVKEMLLRSNGDDDKPMSYNITT  116 (336)
Q Consensus        78 d~d~~~~d~~LG~~~v~L~~l~~~~~~~~~~~~~~~l~~  116 (336)
                      |+++..+|++||++.|+|.++.. ...   ...|+.|+.
T Consensus        98 d~~~~~~~~~iG~~~i~L~~l~~-~~~---~~~W~~L~~  132 (138)
T d1wfma_          98 TCDRFSRHSVAGELRLGLDGTSV-PLG---AAQWGELKT  132 (138)
T ss_dssp             ECCSSCTTSCSEEEEEESSSSSS-CTT---CCEEEECCC
T ss_pred             eecccccceeeeEEEEEhHHccC-CCC---ceEeEeCCC
Confidence            99777789999999999999854 222   346888875

>d1uowa_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptogamin I
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.69  E-value=7.6e-17  Score=134.87  Aligned_cols=94  Identities=16%  Similarity=0.317  Sum_probs=79.5

Q ss_pred             CccEEEEEEEEecCCCCCCCCCCcceEEEEEEcCcc-----eEEEEeeCCCCCCeeeeEEEEEecchhhhcCCcEEEEEE
Q 019724            2 GSRALDITVVSASDLKTAGMFSKMNVYAVVTIFGES-----QTTSVARDCGVRPTWNHQMRFNIDEAAAMQNNLTIVYSI   76 (336)
Q Consensus         2 ~~g~L~V~vi~Ak~L~~~d~~g~~dPYv~v~l~~~~-----~kTkv~~~~t~nP~WnE~f~F~v~~~~~~~~~~~L~v~V   76 (336)
                      ..++|+|+|++|++|+..+..+++||||+|++....     +||++ ++++.||+|||+|.|.|....+  ....|.|+|
T Consensus        23 ~~~~L~V~V~~a~~L~~~~~~~~~dpyV~v~l~~~~~~~~~~kT~v-~~~t~nP~wne~f~F~v~~~~l--~~~~l~i~v   99 (157)
T d1uowa_          23 TAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTI-KKNTLNPYYNESFSFEVPFEQI--QKVQVVVTV   99 (157)
T ss_dssp             TTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEEETTEEEEEEECCC-CCSCSSCEEEEEEEEECCGGGG--GGCEEEEEE
T ss_pred             CCCEEEEEEEEEEEcccccCCCCCCeeEEEEEecCCccccceeccc-ccCCCCcccCCeEEEEecHHHc--CccEEEEEE
Confidence            357999999999999988888999999999986532     67888 4578999999999999976543  346899999


Q ss_pred             eecCCCCCCcccEEEEEeceee
Q 019724           77 RSTGGCFGNSDLGEVFVPVKEM   98 (336)
Q Consensus        77 ~d~d~~~~d~~LG~~~v~L~~l   98 (336)
                      ||++...++++||++.|.|.++
T Consensus       100 ~d~~~~~~~~~iG~~~i~l~~~  121 (157)
T d1uowa_         100 LDYDKIGKNDAIGKVFVGYNST  121 (157)
T ss_dssp             EECCSSSCCCEEEEEEEETTCC
T ss_pred             cccCCCCCCceeEEEEEecccC
Confidence            9997766899999999999763

>d2cm5a1 b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2b-domain of rabphilin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.68  E-value=1.7e-16  Score=129.21  Aligned_cols=96  Identities=9%  Similarity=0.118  Sum_probs=80.1

Q ss_pred             CccEEEEEEEEecCCCCCCCCCCcceEEEEEEcCc-----ceEEEEeeCCCCCCeeeeEEEEEecchhhhcCCcEEEEEE
Q 019724            2 GSRALDITVVSASDLKTAGMFSKMNVYAVVTIFGE-----SQTTSVARDCGVRPTWNHQMRFNIDEAAAMQNNLTIVYSI   76 (336)
Q Consensus         2 ~~g~L~V~vi~Ak~L~~~d~~g~~dPYv~v~l~~~-----~~kTkv~~~~t~nP~WnE~f~F~v~~~~~~~~~~~L~v~V   76 (336)
                      ..++|+|+|++|+||+..+..+.+||||+|++...     ++||+++ +++.||+|||+|.|.|....+  ....|+|+|
T Consensus        13 ~~~~L~V~v~~a~nL~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~-~~t~~P~wne~f~f~v~~~~l--~~~~l~v~v   89 (137)
T d2cm5a1          13 QQGGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIK-KKTLNPEFNEEFFYDIKHSDL--AKKSLDISV   89 (137)
T ss_dssp             TTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEETC---CCEEECCCC-CSCSSCEEEEEEEEECCGGGG--GGCEEEEEE
T ss_pred             CCCEEEEEEEEEECCCCCCCCCCcCeEEEEEEEcCCccceeecCEeE-cCCCCCccceEEEEEeEHHHc--cccEEEEEe
Confidence            36789999999999998888889999999998542     2789885 467999999999999876532  347899999


Q ss_pred             eecCCCCCCcccEEEEEeceeeec
Q 019724           77 RSTGGCFGNSDLGEVFVPVKEMLL  100 (336)
Q Consensus        77 ~d~d~~~~d~~LG~~~v~L~~l~~  100 (336)
                      ||++...+|++||+|.|.|.++..
T Consensus        90 ~~~~~~~~~~~iG~~~i~l~~~~~  113 (137)
T d2cm5a1          90 WDYDIGKSNDYIGGCQLGISAKGE  113 (137)
T ss_dssp             EECCSSSCCEEEEEEEEETTCCHH
T ss_pred             eeCCCCCCCCEEEEEEeCccccCc
Confidence            999766689999999999987543

>d1w15a_ b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin IV
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.67  E-value=9.6e-17  Score=131.27  Aligned_cols=93  Identities=15%  Similarity=0.312  Sum_probs=72.8

Q ss_pred             ccEEEEEEEEecCCCCCCCCCCcceEEEEEEcCc-----ceEEEEeeCCCCCCeeeeEEEEEecchhhhcCCcEEEEEEe
Q 019724            3 SRALDITVVSASDLKTAGMFSKMNVYAVVTIFGE-----SQTTSVARDCGVRPTWNHQMRFNIDEAAAMQNNLTIVYSIR   77 (336)
Q Consensus         3 ~g~L~V~vi~Ak~L~~~d~~g~~dPYv~v~l~~~-----~~kTkv~~~~t~nP~WnE~f~F~v~~~~~~~~~~~L~v~V~   77 (336)
                      .++|+|+|++|++|...+..+.+||||+|++...     ++||++ ++++.||+|||+|.|.|....+  ....|.|+||
T Consensus        14 ~~~L~V~v~~a~~L~~~~~~~~~dpyvkv~l~~~~~~~~~~kT~~-~~~t~~P~wne~f~F~v~~~~~--~~~~l~i~v~   90 (138)
T d1w15a_          14 TNTLTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHV-KKCTPNAVFNELFVFDIPCESL--EEISVEFLVL   90 (138)
T ss_dssp             TTEEEEEEEEEESCC------CCCEEEEEEEEETTEEEEEEECCC-CCSCSSEEEEEEEEEECCSSSS--TTEEEEEEEE
T ss_pred             CCEEEEEEEEeECCCCCCCCCCcCEEEEEEEeCCcccCcccccee-ECCCCCCeECcEEEEEecHHHh--CccEEEEEEE
Confidence            5789999999999999888889999999998532     267887 4568999999999999866532  3467999999


Q ss_pred             ecCCCCCCcccEEEEEeceee
Q 019724           78 STGGCFGNSDLGEVFVPVKEM   98 (336)
Q Consensus        78 d~d~~~~d~~LG~~~v~L~~l   98 (336)
                      |+|...+|++||+|.|.|.+.
T Consensus        91 d~~~~~~~~~iG~~~i~l~~~  111 (138)
T d1w15a_          91 DSERGSRNEVIGRLVLGATAE  111 (138)
T ss_dssp             ECCTTSCCEEEEEEEESTTCC
T ss_pred             eCCCCCCCCEEEEEEEcchhC
Confidence            997777899999999998764

>d1bdya_ b.7.1.1 (A:) Domain from protein kinase C delta {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from protein kinase C delta
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.61  E-value=8.4e-16  Score=123.41  Aligned_cols=110  Identities=12%  Similarity=0.168  Sum_probs=80.7

Q ss_pred             EEEEEEEecCCCCCCCCCCcceEEEEEEcCc-----ceEEEEeeCCCCCCeeeeEEEEEecchhhhcCCcEEEEEEeecC
Q 019724            6 LDITVVSASDLKTAGMFSKMNVYAVVTIFGE-----SQTTSVARDCGVRPTWNHQMRFNIDEAAAMQNNLTIVYSIRSTG   80 (336)
Q Consensus         6 L~V~vi~Ak~L~~~d~~g~~dPYv~v~l~~~-----~~kTkv~~~~t~nP~WnE~f~F~v~~~~~~~~~~~L~v~V~d~d   80 (336)
                      +.|.++.+..++  ...+.+||||+|.+.+.     ..+|++ +++|+||+|||+|.|.|.+.      ..|.|.|||+|
T Consensus         7 ~~~~~~~~~~~~--~~~~~~dPY~~v~l~~~~~~~~~~~t~~-~kkT~nP~WnE~F~~~v~~~------~~l~i~V~d~d   77 (123)
T d1bdya_           7 ISFNSYELGSLQ--AEDDASQPFCAVKMKEALTTDRGKTLVQ-KKPTMYPEWKSTFDAHIYEG------RVIQIVLMRAA   77 (123)
T ss_dssp             EEEEEEECCTTC--CCCCSCCCEEEEEEEEECCGGGTTBEEE-CSCCBCCCTTCEEEEECCTT------CEEEEEEEEET
T ss_pred             EEEEEeecccCC--CCCCCCCCEEEEEEcCccccccceEEEE-eCCCCCcccceEEEEEEccc------cEEEEEEEEcc
Confidence            444445555544  34578999999999653     256777 56789999999999999653      68999999983


Q ss_pred             CCCCCcccEEEEEeceeeeccCCC-CCCCCeeeeeeCCCCCcceEEEEEEEEcc
Q 019724           81 GCFGNSDLGEVFVPVKEMLLRSNG-DDDKPMSYNITTPGGRAKGVLNVSYKFGP  133 (336)
Q Consensus        81 ~~~~d~~LG~~~v~L~~l~~~~~~-~~~~~~~~~l~~~~g~~~G~L~lsl~~~~  133 (336)
                          |+++|.+.|.+.+|...... ......|+.|.     ..|+|+|+++|..
T Consensus        78 ----d~~~g~~~i~l~~l~~~~~~~~~~~~~W~~L~-----~~Gkl~l~v~~f~  122 (123)
T d1bdya_          78 ----EDPMSEVTVGVSVLAERCKKNNGKAEFWLDLQ-----PQAKVLMCVQYFL  122 (123)
T ss_dssp             ----TEEEEEEEEEHHHHHHHHHTTTTEEEEEEECB-----SSCEEEEEEEEEE
T ss_pred             ----ccccCccEEehhheeeccccCCCcccEEEeCC-----CCEEEEEEEEEec
Confidence                78999999999998652111 11134677774     4799999999864

>d1dqva2 b.7.1.2 (A:425-569) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin III
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.60  E-value=1.8e-16  Score=130.56  Aligned_cols=94  Identities=19%  Similarity=0.291  Sum_probs=79.3

Q ss_pred             ccEEEEEEEEecCCCCCCCCCCcceEEEEEEcCcc-----eEEEEeeCCCCCCeeeeEEEEEecchhhhcCCcEEEEEEe
Q 019724            3 SRALDITVVSASDLKTAGMFSKMNVYAVVTIFGES-----QTTSVARDCGVRPTWNHQMRFNIDEAAAMQNNLTIVYSIR   77 (336)
Q Consensus         3 ~g~L~V~vi~Ak~L~~~d~~g~~dPYv~v~l~~~~-----~kTkv~~~~t~nP~WnE~f~F~v~~~~~~~~~~~L~v~V~   77 (336)
                      .++|+|+|++|+||...+..+++||||+|++....     +||+++ +++.||+|||+|.|.|....+  ....|.|+||
T Consensus        19 ~~~L~V~V~~a~nL~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~~~-~~t~~P~wne~f~F~v~~~~~--~~~~l~v~v~   95 (145)
T d1dqva2          19 AGLLTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIK-KNTLNPTYNEALVFDVAPESV--ENVGLSIAVV   95 (145)
T ss_dssp             TTEEEEEEEEEESCCCCSSSSCCCEEEEECCCTTCCTTSCEECCCC-CSCSSCEEEECCCCCCCSGGG--GSCCCCCEEE
T ss_pred             CCEEEEEEEEEeCCCCcCCCCCcCceEEEEEccCCccceeecCEEE-eCCCCceecceEEEEEehhhc--CCCEEEEEEE
Confidence            57899999999999988888899999999987542     788884 568999999999999876533  3467999999


Q ss_pred             ecCCCCCCcccEEEEEeceeee
Q 019724           78 STGGCFGNSDLGEVFVPVKEML   99 (336)
Q Consensus        78 d~d~~~~d~~LG~~~v~L~~l~   99 (336)
                      |++...+|++||++.|+|..+.
T Consensus        96 d~~~~~~~~~iG~~~i~l~~~~  117 (145)
T d1dqva2          96 DYDCIGHNEVIGVCRVGPEAAD  117 (145)
T ss_dssp             ECCSSSCCEEEEECCCSSCTTC
T ss_pred             ecCCCCCCcEEEEEEECchHcC
Confidence            9977778999999999997653

>d2zkmx2 b.7.1.1 (X:678-799) Phospholipase C-beta-2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Phospholipase C-beta-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.57  E-value=1.2e-14  Score=116.46  Aligned_cols=109  Identities=19%  Similarity=0.326  Sum_probs=80.4

Q ss_pred             EEEEEEEEecCCCCCCCCCCcceEEEEEEcC------cceEEEE-eeCCCCCCeeeeE-EEE-EecchhhhcCCcEEEEE
Q 019724            5 ALDITVVSASDLKTAGMFSKMNVYAVVTIFG------ESQTTSV-ARDCGVRPTWNHQ-MRF-NIDEAAAMQNNLTIVYS   75 (336)
Q Consensus         5 ~L~V~vi~Ak~L~~~d~~g~~dPYv~v~l~~------~~~kTkv-~~~~t~nP~WnE~-f~F-~v~~~~~~~~~~~L~v~   75 (336)
                      +|+|+|++|++|.+.    +.||||+|.|.+      .+.+|++ +++++.||+|||+ |.| .+...+    ...|.|+
T Consensus         2 tl~V~Visaq~L~~~----~~dPyV~V~l~g~~~D~~~~~~t~~~~~~n~~nP~wne~~~~~~~~~~~~----l~~L~f~   73 (122)
T d2zkmx2           2 TLSITVISGQFLSER----SVRTYVEVELFGLPGDPKRRYRTKLSPSTNSINPVWKEEPFVFEKILMPE----LASLRVA   73 (122)
T ss_dssp             EEEEEEEEEESCCSS----CCCEEEEEEEECCTTSCCCCEECCCCSSSCCSSCBCCCCCEEEEEESSGG----GCEEEEE
T ss_pred             EEEEEEEEeeCCCCC----CCCcEEEEEEECcCCCCCccEEEEEEEeCCeecceEcccEeEEEecCCCc----ccEEEEE
Confidence            799999999999764    479999999853      2245554 3577899999976 444 344433    2689999


Q ss_pred             EeecCCCCCCcccEEEEEeceeeeccCCCCCCCCeeeeeeCCCCCc--ceEEEEEEEEc
Q 019724           76 IRSTGGCFGNSDLGEVFVPVKEMLLRSNGDDDKPMSYNITTPGGRA--KGVLNVSYKFG  132 (336)
Q Consensus        76 V~d~d~~~~d~~LG~~~v~L~~l~~~~~~~~~~~~~~~l~~~~g~~--~G~L~lsl~~~  132 (336)
                      |||+|    |++||++.|+|+.|..       ...+++|++..++.  ...|.+.|+++
T Consensus        74 V~D~d----~~~lG~~~ipl~~l~~-------GyR~vpL~~~~g~~l~~~~L~v~i~~~  121 (122)
T d2zkmx2          74 VMEEG----NKFLGHRIIPINALNS-------GYHHLCLHSESNMPLTMPALFIFLEMK  121 (122)
T ss_dssp             EEETT----TEEEEEEEEEGGGBCC-------EEEEEEEECTTCCEEEEEEEEEEEEEE
T ss_pred             EECCC----CCEEEEEEEEcccCcC-------CceEEEccCCCcCCCCCceEEEEEEEE
Confidence            99983    7999999999998875       23567888766663  45677777654

>d2yrba1 b.7.1.1 (A:596-737) Fantom {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Fantom
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.33  E-value=0.023  Score=44.41  Aligned_cols=121  Identities=15%  Similarity=0.256  Sum_probs=76.5

Q ss_pred             EEEEEEEEecC----CCCCCCCCCcceEEEEEEcCcc-eEEEEeeCCCCCCeeeeEEEEEecchhhh---cCCcEEEEEE
Q 019724            5 ALDITVVSASD----LKTAGMFSKMNVYAVVTIFGES-QTTSVARDCGVRPTWNHQMRFNIDEAAAM---QNNLTIVYSI   76 (336)
Q Consensus         5 ~L~V~vi~Ak~----L~~~d~~g~~dPYv~v~l~~~~-~kTkv~~~~t~nP~WnE~f~F~v~~~~~~---~~~~~L~v~V   76 (336)
                      .++|.|.++.-    |...+ ......||.+.+-+-+ +.|.+++  +.+|.+|.+..|.|..+.+-   .....|.|+|
T Consensus        11 lfEihi~~~~~s~e~l~~~~-d~~p~tF~T~~Fyd~Etq~TPv~~--g~~p~ynfts~Y~V~~d~~fl~YL~~~~~~lel   87 (142)
T d2yrba1          11 LFEIHINKVTFSSEVLQASG-DKEPVTFCTYAFYDFELQTTPVVR--GLHPEYNFTSQYLVHVNDLFLQYIQKNTITLEV   87 (142)
T ss_dssp             EEEEEEEEECCCHHHHHHHC-SSCCEEEEEECSTTCCCEECCCEE--SSSCCCCEEEEEEECCSHHHHHHHHHCCEEEEE
T ss_pred             EEEEEEeeEEEcHHHHhhcc-CCCCcEEEEEEEEeeeeecCceec--CCCCcceeEEEEEEccCHHHHHHHhhCCEEEEE
Confidence            56777776631    11011 1234568888876544 7777754  58999999998888654321   1235689999


Q ss_pred             eecCCCCCCcccEEEEEeceeeeccCCCCCCCCeeeeeeCCCCC--cceEEEEEEEEc
Q 019724           77 RSTGGCFGNSDLGEVFVPVKEMLLRSNGDDDKPMSYNITTPGGR--AKGVLNVSYKFG  132 (336)
Q Consensus        77 ~d~d~~~~d~~LG~~~v~L~~l~~~~~~~~~~~~~~~l~~~~g~--~~G~L~lsl~~~  132 (336)
                      +.. ....-..|+.++|.|.+|+++ .+.  ...+-.|+..+++  .-|.|..-++++
T Consensus        88 hqa-~g~~~~tvA~g~i~l~~lLd~-~~r--~~~s~~l~g~~~~~~~~G~leyw~rlr  141 (142)
T d2yrba1          88 HQA-YSTEYETIAACQLKFHEILEK-SGR--IFCTASLIGTKGDIPNFGTVEYWFRLR  141 (142)
T ss_dssp             EEE-CSSCEEEEEEEEECCSHHHHC-CSC--EEEEEEECBSSSCCTTSEEEEEEEEEE
T ss_pred             Eee-cCCCcceeEEEEEEhhHhhCc-ccc--ccceeEEEccCCCcceEEEEEEEEEEE
Confidence            987 333445699999999999973 332  2344455554444  478887776654