Citrus Sinensis ID: 019751

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330------

MAVIPRTAQGHGWLRPAVGVVELSQSIIQAVPLSSRKATGGSTEGTAPFLQLPHFTEAVIKKIARKELRDMSLQDRAELLSQVGGFSSTEVQDVEMVLQMMPSLTVEVTCETEGEEGIQEGDIVTIQAWVTLKRGNGLIGALPHAPYYPFHKEENFWFLLADSVSNNVWFSQKVSFMDEPAAITAASKAIEDTMEGSGATVKETSAAVREAAEKVRSGSRLVMGKIQAPAEGNYNLTCYCLCDSWLGCDKRTNLKVKILKRTRAGTRGGIVSEEGPIVEDGAEEEEEDEEEEYDDYESEYSEDEEDERDTKKKVPAANGTVSKKGTNSELSGSDEE

cccccccccccccHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccHHHHHHHHHHccccccHHHHHHHHHHcccccHHHHHHHHHHHHccccEEEEEEEEEccccccccccEEEEEEEEEEcccccccccccccccccccccccEEEEEEEccccEEEEEEEEcccccccHHccccccHHccccccccccHHHHHHHHHHHHHcccccEEEEEccccccccEEEEEEEEEEcccccccEEEEEEEEEEEccccccccccccccccccccccccccccccccccccccccccccHHHHHHcccccccccccccccccccccccccc

ccEEcccccccccHHHHHHHHHHHHHHHHHccHHcccccccccccccHHcccccccHHHHHHHHHHcHHcccHHHHHHHHHHHccccHHHHHHHHHHHHccccEEEEEEEEEEcccccccccEEEEEEEEEEEccccccccEEccccccccccccEEEEEEccccccEEEEEEEcHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHccccEEEEEEEEccccccEEEEEEEEEcccccccccEEEEEEEEEcccccccccccccccccccccccHHccccHHHHcccccccccccccccccccccccccccEccccccccccccccc

maviprtaqghgwlrpavGVVELSQSIIQAvplssrkatggstegtapflqlphFTEAVIKKIARKELRDMSLQDRAELLSQvggfssteVQDVEMVLQMMPSLTVEVTcetegeegiqegdIVTIQAWVTLKRgngligalphapyypfhkeeNFWFLLADSVsnnvwfsqkvsfmdepAAITAASKAIEDtmegsgatvKETSAAVREAAEKVRSgsrlvmgkiqapaegnynltcyclcdswlgcdkrtnLKVKILKRtragtrggivseegpivedgaeeeeedeeeeyddyeseysedeederdtkkkvpaangtvskkgtnselsgsdee

maviprtaqghgwlrpAVGVVELSQSIIQAVPLSSRKATGGSTegtapflqlphfTEAVIKKIARKELRDMSLQDRAELLSQVGGFSSTEVQDVEMVLQMMPSLTVEVTCETegeegiqegdiVTIQAWVTLKRGNGLIGALPHAPYYPFHKEENFWFLLADSVSNNVWFSQKVSFMDEPAAITAASKAIEDTMEGSGATVKETSAAVREAAekvrsgsrlvmGKIQAPAEGNYNLTCYCLCDSWLGCDKRTNLKVKIlkrtragtrggivseegpivedgaeeeeedeeeeyddyeseysedeederdtkkkvpaangtvskkgtnselsgsdee

MAVIPRTAQGHGWLRPAVGVVELSQSIIQAVPLSSRKATGGSTEGTAPFLQLPHFTEAVIKKIARKELRDMSLQDRAELLSQVGGFSSTEVQDVEMVLQMMPSLtvevtcetegeegIQEGDIVTIQAWVTLKRGNGLIGALPHAPYYPFHKEENFWFLLADSVSNNVWFSQKVSFMDEPAAITAASKAIEDTMEGSGATVKETSAAVREAAEKVRSGSRLVMGKIQAPAEGNYNLTCYCLCDSWLGCDKRTNLKVKILKRTRAGTRGGIVSEEGPIVEDGAeeeeedeeeeyddyeseysedeederdtkkkVPAANGTVSKKGTNSELSGSDEE

*********GHGWLRPAVGVVELSQSIIQAVP**************APFLQLPHFTEAVIKKIARKELR********ELLSQVGGFSSTEVQDVEMVLQMMPSLTVEVTCETEGEEGIQEGDIVTIQAWVTLKRGNGLIGALPHAPYYPFHKEENFWFLLADSVSNNVWFSQKVSFMDEPAAI*************************************LVMGKIQAPAEGNYNLTCYCLCDSWLGCDKRTNLKVKILKRTRAGT**********************************************************************

****PRTAQGHGWLRPAVGVVELSQSIIQAVPLSSRKATGGSTEGTAPFLQLPHFTEAVIKKIAR*********************SSTEVQDVEMVLQMMPSLTVEVTCETEGEEGIQEGDIVTIQA*************LPHAPYYPFHKEENFWFLLADSVSNNVWFSQKVSFMDEPAAI*****************VKETSAAVREAAEKV************APAEGNYNLTCYCLCDSWLGCDKRTNLKVKILK****************************************************************************

MAVIPRTAQGHGWLRPAVGVVELSQSIIQAVPL**********EGTAPFLQLPHFTEAVIKKIARKELRDMSLQDRAELLSQVGGFSSTEVQDVEMVLQMMPSLTVEVTCETEGEEGIQEGDIVTIQAWVTLKRGNGLIGALPHAPYYPFHKEENFWFLLADSVSNNVWFSQKVSFMDEPAAITAASKAIEDTMEGSGATVKET**************SRLVMGKIQAPAEGNYNLTCYCLCDSWLGCDKRTNLKVKILKRTRAGTRGGIVSEEGPIV***********************************VPAANGTV***************

MAVIPRTAQGHGWLRPAVGVVELSQSIIQAVPLSSRKATGGSTEGTAPFLQLPHFTEAVIKKIARKELRDMSLQDRAELLSQVGGFSSTEVQDVEMVLQMMPSLTVEVTCETEGEEGIQEGDIVTIQAWVTLKRGNGLIGALPHAPYYPFHKEENFWFLLADSVSNNVWFSQKVSFMDEPAAITAASKAIEDTME***ATV***S**VREAA**VRSGSRLVMGKIQAPAEGNYNLTCYCLCDSWLGCDKRTNLKVKILKRT**************************************************************************

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MAVIPRTAQGHGWLRPAVGVVELSQSIIQAVPLSSRKATGGSTEGTAPFLQLPHFTEAVIKKIARKELRDMSLQDRAELLSQVGGFSSTEVQDVEMVLQMMPSLTVEVTCETEGEEGIQEGDIVTIQAWVTLKRGNGLIGALPHAPYYPFHKEENFWFLLADSVSNNVWFSQKVSFMDEPAAITAASKAIEDTMEGSGATVKETSAAVREAAEKVRSGSRLVMGKIQAPAEGNYNLTCYCLCDSWLGCDKRTNLKVKILKRTRAGTRGGIVSEEGPIVxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxVPAANGTVSKKGTNSELSGSDEE

no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		336	2.2.26 [Sep-21-2011]
Q55CI8		2237	Activating signal cointeg	yes	no	0.577	0.086	0.235	1e-10
Q9VUV9		2142	Putative U5 small nuclear	yes	no	0.562	0.088	0.223	2e-10
O75643		2136	U5 small nuclear ribonucl	yes	no	0.562	0.088	0.231	3e-09
Q9U2G0		2145	Putative U5 small nuclear	yes	no	0.547	0.085	0.250	4e-09

>sp\|Q55CI8\|HELCL_DICDI Activating signal cointegrator 1 complex subunit 3-like OS=Dictyostelium discoideum GN=ascc3l PE=3 SV=1	Back alignment and function desciption

 Score = 67.4 bits (163), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 62/263 (23%), Positives = 106/263 (40%), Gaps = 69/263 (26%)

Query: 10   GHGWLRPAVGVVELSQSIIQAVPLSSRKATGGSTEGTAPFLQLPHFTEAVIKKIARKELR 69
             + WL+PA+  +ELSQ I QA+            +  + F QLPH  +  I  I  + + 
Sbjct: 2012 SNSWLQPAIAAMELSQMITQAM-----------WDSDSVFKQLPHMNKRRIDAITSQGIE 2060

Query: 70   D----MSLQDRAELLSQVGGFSSTEVQDVEMVLQMMPSLTVEVTCETEGEEGIQEGDIVT 125
                 MSL D + +  Q+   S  E  D  +V   M    ++++ + + E+ +    I+T
Sbjct: 2061 SVFDLMSLDDNSRI--QLLDLSQQESND--LVQSFMKYPDIDISYQVQDEDDLHADSIMT 2116

Query: 126  IQAWVTLKRG---------NGLIGALPHAPYYPFHKEENFWFLLADSVSNNVWFSQKVSF 176
            ++  +    G         N  I  +  APYYP  K   +W L+ DS +N++   ++++F
Sbjct: 2117 VEMVIERDLGDDEENPIEINDSINVV-SAPYYPKEKICGWWALIGDSKNNHLLAIKRITF 2175

Query: 177  MDEPAAITAASKAIEDTMEGSGATVKETSAAVREAAEKVRSGSRLVMGKIQAPAEGNYNL 236
            +                        K+T                 V  +   PA G + L
Sbjct: 2176 L------------------------KKTK----------------VKFEFPTPAVGKHQL 2195

Query: 237  TCYCLCDSWLGCDKRTNLKVKIL 259
            + Y   DS+ GCD+   L + IL
Sbjct: 2196 SLYLFSDSYNGCDQEHELNINIL 2218

Dictyostelium discoideum (taxid: 44689)
EC: 3EC: .EC: 6EC: .EC: 4EC: .EC: -

>sp\|Q9VUV9\|U520_DROME Putative U5 small nuclear ribonucleoprotein 200 kDa helicase OS=Drosophila melanogaster GN=CG5931 PE=2 SV=4	Back alignment and function description

>sp\|O75643\|U520_HUMAN U5 small nuclear ribonucleoprotein 200 kDa helicase OS=Homo sapiens GN=SNRNP200 PE=1 SV=2	Back alignment and function description

>sp\|Q9U2G0\|U520_CAEEL Putative U5 small nuclear ribonucleoprotein 200 kDa helicase OS=Caenorhabditis elegans GN=Y46G5A.4 PE=3 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		336
224079782		685	predicted protein [Populus trichocarpa]	0.964	0.472	0.818	1e-145
225464625		688	PREDICTED: translocation protein SEC63 h	1.0	0.488	0.780	1e-141
356556432		685	PREDICTED: translocation protein SEC63 h	1.0	0.490	0.752	1e-139
449485587		477	PREDICTED: putative U5 small nuclear rib	0.964	0.679	0.763	1e-136
449445973		685	PREDICTED: translocation protein SEC63 h	0.964	0.472	0.763	1e-136
255545152		682	heat shock protein binding protein, puta	0.994	0.489	0.786	1e-135
356530479		685	PREDICTED: translocation protein SEC63 h	1.0	0.490	0.728	1e-135
224135305		685	predicted protein [Populus trichocarpa]	0.961	0.471	0.819	1e-132
302143768		618	unnamed protein product [Vitis vinifera]	0.803	0.436	0.822	1e-131
357450181		685	Chaperone protein dnaJ [Medicago truncat	1.0	0.490	0.740	1e-131

>gi\|224079782\|ref\|XP_002305942.1\| predicted protein [Populus trichocarpa] gi\|118481069\|gb\|ABK92488.1\| unknown [Populus trichocarpa] gi\|222848906\|gb\|EEE86453.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

 Score =  519 bits (1337), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 271/331 (81%), Positives = 299/331 (90%), Gaps = 7/331 (2%)

Query: 1   MAVIPRTAQGHGWLRPAVGVVELSQSIIQAVPLSSRKATGGSTEGTAPFLQLPHFTEAVI 60
           MAVIPRT+QGHGWLRPA GVVELSQ IIQAVPLS+RKATGGSTEG APFLQLPHFTE+V+
Sbjct: 343 MAVIPRTSQGHGWLRPATGVVELSQCIIQAVPLSARKATGGSTEGIAPFLQLPHFTESVV 402

Query: 61  KKIARKELR------DMSLQDRAELLSQVGGFSSTEVQDVEMVLQMMPSLTVEVTCETEG 114
           KKIARK++R      DM+LQ+RAE+L QV GFSS EVQDVEMVL+MMPS+TVEV CETEG
Sbjct: 403 KKIARKKVRTFEDFHDMTLQERAEVLQQVAGFSSAEVQDVEMVLEMMPSVTVEVRCETEG 462

Query: 115 EEGIQEGDIVTIQAWVTLKRGNGLIGALPHAPYYPFHKEENFWFLLADSVSNNVWFSQKV 174
           EEGIQEGDIVT+ AW+TLKR NGL+GALPHAP +PFHKEENFWFLLAD+ SN+VWFSQKV
Sbjct: 463 EEGIQEGDIVTVHAWITLKRANGLVGALPHAPSFPFHKEENFWFLLADAASNDVWFSQKV 522

Query: 175 SFMDEPAAITAASKAIEDTMEGSGATVKETSAAVREAAEKVRSGSRLVMGKIQAPAEGNY 234
           +FMDE AAIT ASK IEDTMEGSGA+V+ETSAAVREA EKVR GSRLVMGK+ APAEGNY
Sbjct: 523 NFMDEAAAITGASKTIEDTMEGSGASVRETSAAVREAVEKVRGGSRLVMGKLPAPAEGNY 582

Query: 235 NLTCYCLCDSWLGCDKRTNLKVKILKRTRAGTRGGIVSEEGPIVEDG-AEEEEEDEEEEY 293
           NLTCYCLCDSW+GCDK+T+LKVK+LKRTRAGTRGG+VSEEGPI EDG  EEEE +EEE  
Sbjct: 583 NLTCYCLCDSWIGCDKKTSLKVKVLKRTRAGTRGGLVSEEGPIAEDGIEEEEENEEEEYD 642

Query: 294 DDYESEYSEDEEDERDTKKKVPAANGTVSKK 324
           DDYESEYSEDEEDE+DTKKK PAANG V KK
Sbjct: 643 DDYESEYSEDEEDEKDTKKKGPAANGKVQKK 673

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|225464625\|ref\|XP_002275958.1\| PREDICTED: translocation protein SEC63 homolog [Vitis vinifera]	Back alignment and taxonomy information

>gi\|356556432\|ref\|XP_003546530.1\| PREDICTED: translocation protein SEC63 homolog [Glycine max]	Back alignment and taxonomy information

>gi\|449485587\|ref\|XP_004157217.1\| PREDICTED: putative U5 small nuclear ribonucleoprotein 200 kDa helicase-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|449445973\|ref\|XP_004140746.1\| PREDICTED: translocation protein SEC63 homolog [Cucumis sativus]	Back alignment and taxonomy information

>gi\|255545152\|ref\|XP_002513637.1\| heat shock protein binding protein, putative [Ricinus communis] gi\|223547545\|gb\|EEF49040.1\| heat shock protein binding protein, putative [Ricinus communis]	Back alignment and taxonomy information

>gi\|356530479\|ref\|XP_003533808.1\| PREDICTED: translocation protein SEC63 homolog [Glycine max]	Back alignment and taxonomy information

>gi\|224135305\|ref\|XP_002327614.1\| predicted protein [Populus trichocarpa] gi\|222836168\|gb\|EEE74589.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|302143768\|emb\|CBI22629.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|357450181\|ref\|XP_003595367.1\| Chaperone protein dnaJ [Medicago truncatula] gi\|355484415\|gb\|AES65618.1\| Chaperone protein dnaJ [Medicago truncatula]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		336
TAIR\|locus:2016354		687	ATERDJ2A [Arabidopsis thaliana	0.833	0.407	0.721	2.1e-113
TAIR\|locus:2127373		661	ATERDJ2B [Arabidopsis thaliana	0.812	0.413	0.603	2.1e-88
UNIPROTKB\|F1SU36		553	SNRNP200 "Uncharacterized prot	0.410	0.249	0.268	1.2e-07
ZFIN\|ZDB-GENE-081105-64		2134	si:ch211-251j10.5 "si:ch211-25	0.410	0.064	0.286	4e-07
FB\|FBgn0263599		2142	l(3)72Ab "lethal (3) 72Ab" [Dr	0.410	0.064	0.268	4.7e-07
GENEDB_PFALCIPARUM\|PF13_0102		651	PF13_0102 "DNAJ-like Sec63 hom	0.318	0.164	0.262	1.1e-06
UNIPROTKB\|Q8IEC8		651	PF13_0102 "DnaJ/SEC63 protein,	0.318	0.164	0.262	1.1e-06
UNIPROTKB\|F1LNJ2		2139	Ascc3l1 "Protein Ascc3l1" [Rat	0.410	0.064	0.262	3.9e-06
WB\|WBGene00012896		2145	snrp-200 [Caenorhabditis elega	0.401	0.062	0.301	4.2e-06
UNIPROTKB\|Q9U2G0		2145	Y46G5A.4 "Putative U5 small nu	0.401	0.062	0.301	4.2e-06

TAIR\|locus:2016354 ATERDJ2A [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 1085 (387.0 bits), Expect = 2.1e-113, Sum P(2) = 2.1e-113
 Identities = 207/287 (72%), Positives = 246/287 (85%)

Query:     1 MAVIPRTAQGHGWLRPAVGVVELSQSIIQAVPLSSRKATGGSTEGTAPFLQLPHFTEAVI 60
             MAVIPRTAQGHGWLRPAVGVVELSQ I+QAVPLS+RK++G S+EG +PFLQLPHF++AV+
Sbjct:   343 MAVIPRTAQGHGWLRPAVGVVELSQCIVQAVPLSARKSSGVSSEGISPFLQLPHFSDAVV 402

Query:    61 KKIARK------ELRDMSLQDRAELLSQVGGFSSTEVQDVEMVLQMMPSLXXXXXXXXXX 114
             KKIARK      +L++M L+DR+ELL+QV G S+T+V+D+E VL+MMPS+          
Sbjct:   403 KKIARKKVKSFQDLQEMRLEDRSELLTQVAGLSATDVEDIEKVLEMMPSITVDITCETEG 462

Query:   115 XXXIQEGDIVTIQAWVTLKRGNGLIGALPHAPYYPFHKEENFWFLLADSVSNNVWFSQKV 174
                IQEGDIVT+QAWVTLKR NGL+GALPHAPY+PFHKEEN+W LLADSVSNNVWFSQKV
Sbjct:   463 EEGIQEGDIVTLQAWVTLKRPNGLVGALPHAPYFPFHKEENYWVLLADSVSNNVWFSQKV 522

Query:   175 SFMDEPAAITAASKAIEDTMEGSGATVKETSAAVREAAEKVRSGSRLVMGKIQAPAEGNY 234
             SF+DE  AITAASKAI ++MEGSGA VKET+ AVREA EKV+ GSRLVMGK+QAPAEG Y
Sbjct:   523 SFLDEGGAITAASKAISESMEGSGAGVKETNDAVREAIEKVKGGSRLVMGKLQAPAEGTY 582

Query:   235 NLTCYCLCDSWLGCDKRTNLKVKILKRTRAGTRGGIVSEEGPIVEDG 281
             NLTC+CLCD+W+GCDK+  LKVK+LKRTRAGTRG +VS+EG I E+G
Sbjct:   583 NLTCFCLCDTWIGCDKKQALKVKVLKRTRAGTRG-LVSDEGAIAEEG 628

GO:0006457 "protein folding" evidence=IEA;ISS

GO:0009507 "chloroplast" evidence=ISM

GO:0031072 "heat shock protein binding" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=IDA

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0030176 "integral to endoplasmic reticulum membrane" evidence=IDA

GO:0005829 "cytosol" evidence=RCA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=RCA

TAIR\|locus:2127373 ATERDJ2B [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

UNIPROTKB\|F1SU36 SNRNP200 "Uncharacterized protein" [Sus scrofa (taxid:9823)]	Back alignment and assigned GO terms

ZFIN\|ZDB-GENE-081105-64 si:ch211-251j10.5 "si:ch211-251j10.5" [Danio rerio (taxid:7955)]	Back alignment and assigned GO terms

FB\|FBgn0263599 l(3)72Ab "lethal (3) 72Ab" [Drosophila melanogaster (taxid:7227)]	Back alignment and assigned GO terms

GENEDB_PFALCIPARUM\|PF13_0102 PF13_0102 "DNAJ-like Sec63 homologue" [Plasmodium falciparum (taxid:5833)]	Back alignment and assigned GO terms

UNIPROTKB\|Q8IEC8 PF13_0102 "DnaJ/SEC63 protein, putative" [Plasmodium falciparum 3D7 (taxid:36329)]	Back alignment and assigned GO terms

UNIPROTKB\|F1LNJ2 Ascc3l1 "Protein Ascc3l1" [Rattus norvegicus (taxid:10116)]	Back alignment and assigned GO terms

WB\|WBGene00012896 snrp-200 [Caenorhabditis elegans (taxid:6239)]	Back alignment and assigned GO terms

UNIPROTKB\|Q9U2G0 Y46G5A.4 "Putative U5 small nuclear ribonucleoprotein 200 kDa helicase" [Caenorhabditis elegans (taxid:6239)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	fgenesh4_pg.C_LG_IV000840	SubName- Full=Putative uncharacterized protein; (685 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	gw1.XVIII.2978.1	SecY protein (478 aa)	•	0.800
	gw1.IX.4814.1	SubName- Full=Putative uncharacterized protein; (83 aa)	•	0.800
	gw1.I.3107.1	hypothetical protein (68 aa)	•	0.800
	grail3.0033027302	SubName- Full=Putative uncharacterized protein; (84 aa)	•	0.800
	grail3.0005029101	SubName- Full=Putative uncharacterized protein; (69 aa)	•	0.800
	fgenesh4_pm.C_LG_XII000368	SubName- Full=Putative uncharacterized protein; (69 aa)	•	0.800
	estExt_fgenesh4_pg.C_1780025	Sec61 transport protein (477 aa)	•	0.800
	estExt_Genewise1_v1.C_LG_XI3485	SubName- Full=Putative uncharacterized protein; (476 aa)	•	0.800

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		336
smart00611		312	smart00611, SEC63, Domain of unknown function in S	4e-37
pfam02889		309	pfam02889, Sec63, Sec63 Brl domain	3e-31
smart00973		314	smart00973, Sec63, Sec63 Brl domain	1e-13
pfam03344		715	pfam03344, Daxx, Daxx Family	0.002

>gnl\|CDD\|214744 smart00611, SEC63, Domain of unknown function in Sec63p, Brr2p and other proteins	Back alignment and domain information

 Score =  134 bits (340), Expect = 4e-37
 Identities = 63/258 (24%), Positives = 96/258 (37%), Gaps = 74/258 (28%)

Query: 7   TAQGHGWLRPAVGVVELSQSIIQAVPLSSRKATGGSTEGTAPFLQLPHFTEAVIKKIARK 66
            A   GWL  A+  + LSQ IIQA+  +             P LQLPH  E ++K++ +K
Sbjct: 122 IALERGWLSTALNALNLSQMIIQALWPTDS-----------PLLQLPHLPEEILKRLEKK 170

Query: 67  ------ELRDMSLQDRAELLSQVGGFSSTEVQDVEMVLQMMPSLTVEVTCETEGEEGIQE 120
                 +L ++  ++R ELL    G    E + V  VL  +P L +E++   E       
Sbjct: 171 KVLSLEDLLELEDEERGELL----GLLDAEGERVYKVLSRLPKLNIEISL--EPITRTVL 224

Query: 121 GDIVTIQAWVTLKRGNGLIGALPHAPYYPFHKEENFWFLLADSVSNNVWFSQKVSFMDEP 180
           G  VT+   +T                    K+E +W ++ DS  N +   ++ S     
Sbjct: 225 GVEVTLTVDLTWDD-------------EIHGKQEGWWLVIGDSDGNELLHIERFSL---- 267

Query: 181 AAITAASKAIEDTMEGSGATVKETSAAVREAAEKVRSGSRLVMGKIQAPA-EGNYNLTCY 239
                                              ++ S  V     APA EGNY  T  
Sbjct: 268 ---------------------------------NKKNVSEEVKLDFTAPATEGNYQYTLR 294

Query: 240 CLCDSWLGCDKRTNLKVK 257
            + DS+LGCD+   L   
Sbjct: 295 LVSDSYLGCDQEYPLSFD 312

Length = 312

>gnl\|CDD\|217270 pfam02889, Sec63, Sec63 Brl domain	Back alignment and domain information

>gnl\|CDD\|214946 smart00973, Sec63, Sec63 Brl domain	Back alignment and domain information

>gnl\|CDD\|217503 pfam03344, Daxx, Daxx Family	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		336
KOG4434		520	consensus Molecular chaperone SEC63, endoplasmic r	100.0
smart00611		312	SEC63 Domain of unknown function in Sec63p, Brr2p	100.0
PF02889		314	Sec63: Sec63 Brl domain; InterPro: IPR004179 This	100.0
COG5407		610	SEC63 Preprotein translocase subunit Sec63 [Intrac	99.82
KOG0951		1674	consensus RNA helicase BRR2, DEAD-box superfamily	99.74
KOG0951		1674	consensus RNA helicase BRR2, DEAD-box superfamily	99.56
KOG0952		1230	consensus DNA/RNA helicase MER3/SLH1, DEAD-box sup	98.05
PRK01172		674	ski2-like helicase; Provisional	97.9
PRK02362		737	ski2-like helicase; Provisional	97.41
PRK00254		720	ski2-like helicase; Provisional	96.92
KOG1824		1233	consensus TATA-binding protein-interacting protein	86.2
PF15243		92	ANAPC15: Anaphase-promoting complex subunit 15	84.86
PF09026		101	CENP-B_dimeris: Centromere protein B dimerisation	83.49
PF06524		314	NOA36: NOA36 protein; InterPro: IPR010531 This fam	81.42

>KOG4434 consensus Molecular chaperone SEC63, endoplasmic reticulum translocon component [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

Probab=100.00  E-value=5.9e-41  Score=322.52  Aligned_cols=231  Identities=32%  Similarity=0.530  Sum_probs=198.3

Q ss_pred             HHHHHHHHHHHHHHHHhcCCCccCCCCCCCCCCCCcccCCCCCHHHHHHHhhH-------HhhcCCHHHHHHHHhhccCC
Q 019751           14 LRPAVGVVELSQSIIQAVPLSSRKATGGSTEGTAPFLQLPHFTEAVIKKIARK-------ELRDMSLQDRAELLSQVGGF   86 (336)
Q Consensus        14 L~~al~~m~L~Q~IvQA~W~~~~~~~~~~~~~~spLlQLPh~~~e~v~kl~~k-------~L~~~~~~er~~lL~~~~gl   86 (336)
                      +.+.-+||.|++|+|||+|.           ..||||||||++++.+.++.++       +|..|..+.|+.||+.   +
T Consensus       129 iet~eNcmKlspM~vQgLwq-----------fkSPLLQLPHitednL~~~~KKr~vks~qdla~lk~e~rr~lL~~---L  194 (520)
T KOG4434|consen  129 IETFENCMKLSPMFVQGLWQ-----------FKSPLLQLPHITEDNLQHLRKKRKVKSCQDLAVLKAETRRSLLRS---L  194 (520)
T ss_pred             HHHHHHHHhccHHHHHHHHH-----------hcChhhcCCccchHHHHHHhhhcccccHHHHhhcCHHHHHHHHHh---c
Confidence            67788999999999999999           8999999999999999888765       7888999999999997   8


Q ss_pred             ChHHHHHHHHHHhcCCceeEEEEEEecCCc---cccCCCeEEEEEeeeeecc----------------------------
Q 019751           87 SSTEVQDVEMVLQMMPSLTVEVTCETEGEE---GIQEGDIVTIQAWVTLKRG----------------------------  135 (336)
Q Consensus        87 s~~q~~~v~~v~~~lP~I~v~~~~~V~ge~---~It~g~~vtl~~~V~L~R~----------------------------  135 (336)
                      ++.++.+++.|+.+||.|.+++.+.|.|++   .||+|.+||+.  |+|+|.                            
T Consensus       195 sdeeYe~vM~VLg~mP~~~~~ik~~V~dded~n~~TaG~vVTv~--Vtl~R~~l~d~~e~~~~d~~k~paedG~~de~n~  272 (520)
T KOG4434|consen  195 SDEEYEDVMVVLGMMPRLQIEIKTVVEDDEDKNELTAGCVVTVK--VTLRRSRLIDPQEAGLADQYKKPAEDGGDDENNL  272 (520)
T ss_pred             chHHHHHHHHHHccCcceEEEeeEEEecCCcccceeeeeEEEEE--EEEEeccccChHhhhhhhhhhCchhhCCCcccch
Confidence            999999999999999999999999998865   59999999999  888873                            


Q ss_pred             --------------------------------------------------------------------------C-----
Q 019751          136 --------------------------------------------------------------------------N-----  136 (336)
Q Consensus       136 --------------------------------------------------------------------------n-----  136 (336)
                                                                                                |     
T Consensus       273 ea~g~~~eaaa~~~~~~vKK~kpw~K~Kpk~~kkpaq~Q~~qK~v~~~aas~at~ka~eeea~~~~sD~E~e~~n~Ds~d  352 (520)
T KOG4434|consen  273 EASGAPEEAAATVEEEEVKKRKPWEKNKPKQKKKPAQGQGQQKFVKKNAASPATEKALEEEAKDKGSDSEEEETNRDSQD  352 (520)
T ss_pred             hccCChhhhccccchhhhhhcCchhhcCCCcccCccccchhhhhcccccCChhhhhhhHHHhhhcCcchhhhhhcccccc
Confidence                                                                                      0     


Q ss_pred             ------------------------------------------CCCCCCccCCCCCCCCcccEEEEEEECCCCeEEEEeee
Q 019751          137 ------------------------------------------GLIGALPHAPYYPFHKEENFWFLLADSVSNNVWFSQKV  174 (336)
Q Consensus       137 ------------------------------------------~~~~~~v~aP~FP~~K~E~WwvvlgD~~~n~Ll~~krv  174 (336)
                                                                ......+||||||-.|.|.||+.|.|.++..||.+...
T Consensus       353 ees~asd~~~D~e~~~~~ddddd~EWe~lqa~~~kr~~lEtKs~~tHtVh~pyFPeEKqEwWW~Yi~drKsrtLlt~Pyh  432 (520)
T KOG4434|consen  353 EESDASDRDSDREQDEKQDDDDDAEWEELQASIQKRALLETKSKITHTVHSPYFPEEKQEWWWLYIADRKSRTLLTMPYH  432 (520)
T ss_pred             cccccCccccchhhccccccccHHHHHHHHHHHHHHHhhhcccccceeeccCCCcchhhheeeeeeecccccceecchhh
Confidence                                                      01244699999999999999999999999998875432


Q ss_pred             eeccchhHHhhhhhhhhhhhcCCCCccchhhHHHHHHHhhhhcCceeEEEEEEcC-CCCceeEEEEEEcCCCcccceEEE
Q 019751          175 SFMDEPAAITAASKAIEDTMEGSGATVKETSAAVREAAEKVRSGSRLVMGKIQAP-AEGNYNLTCYCLCDSWLGCDKRTN  253 (336)
Q Consensus       175 ~~~~~~~~~~~~~k~i~~~~~~~g~~~k~~~~~~~~~~~~~k~~~~~v~l~F~aP-~~G~~~l~l~viSDsYiG~D~~~~  253 (336)
                                                           |.+++ ....|.|+|++| .||.|+|+|++.||||+|+||..+
T Consensus       433 -------------------------------------V~tL~-d~eei~lkF~AP~~pG~Ytytv~lrSDSYmg~dq~~~  474 (520)
T KOG4434|consen  433 -------------------------------------VCTLK-DTEEIELKFPAPGKPGNYTYTVFLRSDSYMGLDQIKP  474 (520)
T ss_pred             -------------------------------------hhccc-ccceeEEeccCCCCCCceEEEEEEecccccChhhccc
Confidence                                                 12232 345789999999 899999999999999999999999


Q ss_pred             EEEEeeccCccCccccccccCCCCccCCCCCcccccccccCCcCCcccccchhhh
Q 019751          254 LKVKILKRTRAGTRGGIVSEEGPIVEDGAEEEEEDEEEEYDDYESEYSEDEEDER  308 (336)
Q Consensus       254 i~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~  308 (336)
                      ++|.|.+++.       |++++|.+++.|+++|+-++.|   .=++|++|++++.
T Consensus       475 lKldV~eAk~-------vp~~Hpqwd~~~~e~e~~~~~e---~~~Dyted~~~eE  519 (520)
T KOG4434|consen  475 LKLDVHEAKP-------VPENHPQWDTAIEEDEDQEDSE---GFEDYTEDEEEEE  519 (520)
T ss_pred             eeeeeccCCC-------CCCCCccccccccccccccccc---ccccccccccccc
Confidence            9999999987       9999999999999888776443   3456777666553

>smart00611 SEC63 Domain of unknown function in Sec63p, Brr2p and other proteins	Back alignment and domain information

>PF02889 Sec63: Sec63 Brl domain; InterPro: IPR004179 This domain was named after the yeast Sec63 (or NPL1) (also known as the Brl domain) protein in which it was found	Back alignment and domain information

>COG5407 SEC63 Preprotein translocase subunit Sec63 [Intracellular trafficking and secretion]	Back alignment and domain information

>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]	Back alignment and domain information

>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]	Back alignment and domain information

>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]	Back alignment and domain information

>PRK01172 ski2-like helicase; Provisional	Back alignment and domain information

>PRK02362 ski2-like helicase; Provisional	Back alignment and domain information

>PRK00254 ski2-like helicase; Provisional	Back alignment and domain information

>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]	Back alignment and domain information

>PF15243 ANAPC15: Anaphase-promoting complex subunit 15	Back alignment and domain information

>PF09026 CENP-B_dimeris: Centromere protein B dimerisation domain; InterPro: IPR015115 Centromere protein B (CENP-B) interacts with centromeric heterochromatin in chromosomes and binds to a specific subset of alphoid satellite DNA, called the CENP-B box	Back alignment and domain information

>PF06524 NOA36: NOA36 protein; InterPro: IPR010531 This family consists of several NOA36 proteins which contain 29 highly conserved cysteine residues	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		336
4f91_B		1724	Brr2 Helicase Region Length = 1724		8e-08
4f92_B		1724	Brr2 Helicase Region S1087l Length = 1724		8e-08
3im1_A		328	Structure Of The C-Terminal Sec63 Unit Of Yeast Brr		2e-04

>pdb|4F91|B Chain B, Brr2 Helicase Region Length = 1724

Back alignment and structure

Iteration: 1

Score = 54.3 bits (129), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 59/253 (23%), Positives = 101/253 (39%), Gaps = 66/253 (26%) Query: 10 GHGWLRPAVGVVELSQSIIQAVPLSSRKATGGSTEGTAPFLQLPHFTEAVIKKIARK--- 66 +GWL PA+ +EL+Q + QA+ + QLPHFT IK+ K Sbjct: 1531 SNGWLSPALAAMELAQMVTQAM-----------WSKDSYLKQLPHFTSEHIKRCTDKGVE 1579 Query: 67 ---ELRDMSLQDRAELLSQVGGFSSTEVQDVEMVLQMMPSLXXXXXXXXXXXXXIQEGDI 123 ++ +M ++R LL + +++ DV P++ I+ G Sbjct: 1580 SVFDIMEMEDEERNALLQ----LTDSQIADVARFCNRYPNI--ELSYEVVDKDSIRSGGP 1633 Query: 124 VTIQAWVTLKRGNGLIGALPHAPYYPFHKEENFWFLLADSVSNNVWFSQKVSFMDEPAAI 183 V + V L+R + G + AP +P +EE +W ++ D+ SN++ ++ + Sbjct: 1634 VVV--LVQLEREEEVTGPVI-APLFPQKREEGWWVVIGDAKSNSLISIKR---------L 1681 Query: 184 TAASKAIEDTMEGSGATVKETSAAVREAAEKVRSGSRLVMGKIQAPAEGNYNLTCYCLCD 243 T KA KV+ APA G +N T Y + D Sbjct: 1682 TLQQKA------------------------KVKLD-------FVAPATGAHNYTLYFMSD 1710 Query: 244 SWLGCDKRTNLKV 256 +++GCD+ V Sbjct: 1711 AYMGCDQEYKFSV 1723

PyMOL of 4f91

>pdb|4F92|B Chain B, Brr2 Helicase Region S1087l Length = 1724

Back alignment and structure

>pdb|3IM1|A Chain A, Structure Of The C-Terminal Sec63 Unit Of Yeast Brr2, P212121 Form Length = 328

Back alignment and structure

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		336
3im1_A		328	Protein SNU246, PRE-mRNA-splicing helicase BRR2; A	6e-28
2q0z_X		339	Protein Pro2281; SEC63, SEC, NESG, HR1979, structu	1e-25
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-06

>3im1_A Protein SNU246, PRE-mRNA-splicing helicase BRR2; ATPase, RNA helicase, rnpase, RNA unwindase, molecular model mRNA splicing; 1.65A {Saccharomyces cerevisiae} PDB: 3im2_A* 3hib_A Length = 328	Back alignment and structure

 Score =  110 bits (275), Expect = 6e-28
 Identities = 47/255 (18%), Positives = 92/255 (36%), Gaps = 61/255 (23%)

Query: 8   AQGHGWLRPAVGVVELSQSIIQAVPLSSRKATGGSTEGTAPFLQLPHFTEAVIKKIARKE 67
              +G+L  A   ++L+Q +IQ V            +   P  Q+PHF   +++K     
Sbjct: 130 LSANGYLN-ATTAMDLAQMLIQGVW-----------DVDNPLRQIPHFNNKILEKCKEI- 176

Query: 68  LRDMSLQDRAEL----LSQVGGFSSTEVQDVEMVLQMMPSLTVEVTCETEGEEGIQEGDI 123
               ++ D   L      ++   + +++  V   +   P+  VE+T      + +  G  
Sbjct: 177 -NVETVYDIMALEDEERDEILTLTDSQLAQVAAFVNNYPN--VELTYSLNNSDSLISGVK 233

Query: 124 VTIQAWVTLKRGNGLIGALPHAPYYPFHKEENFWFLLADSVSNNVWFSQKVSFMDEPAAI 183
             I   + L R          +  YPF K E++W +L +     ++  +KV+   E    
Sbjct: 234 QKI--TIQLTRDVEPENLQVTSEKYPFDKLESWWLVLGEVSKKELYAIKKVTLNKE---- 287

Query: 184 TAASKAIEDTMEGSGATVKETSAAVREAAEKVRSGSRLVMGKIQAPAEGNYNLTCYCLCD 243
                                              ++    +   P  G +NLT +C+CD
Sbjct: 288 -----------------------------------TQQYELEFDTPTSGKHNLTIWCVCD 312

Query: 244 SWLGCDKRTNLKVKI 258
           S+L  DK  + ++ +
Sbjct: 313 SYLDADKELSFEINV 327

PyMOL of 3im1

>2q0z_X Protein Pro2281; SEC63, SEC, NESG, HR1979, structural genomics, translocase, northeast structural genomics consortium, PSI-2; 2.00A {Homo sapiens} SCOP: a.289.1.1 b.1.18.22 Length = 339	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		336
3im1_A		328	Protein SNU246, PRE-mRNA-splicing helicase BRR2; A	100.0
2q0z_X		339	Protein Pro2281; SEC63, SEC, NESG, HR1979, structu	100.0
4f92_B		1724	U5 small nuclear ribonucleoprotein 200 kDa helica;	100.0
4f92_B		1724	U5 small nuclear ribonucleoprotein 200 kDa helica;	99.81
2p6r_A		702	Afuhel308 helicase; protein-DNA complex, SF2 helic	98.17
2zj8_A		720	DNA helicase, putative SKI2-type helicase; RECA fo	98.17
2va8_A		715	SSO2462, SKI2-type helicase; hydrolase, DNA repair	97.76

>3im1_A Protein SNU246, PRE-mRNA-splicing helicase BRR2; ATPase, RNA helicase, rnpase, RNA unwindase, molecular model mRNA splicing; 1.65A {Saccharomyces cerevisiae} PDB: 3im2_A* 3hib_A	Back alignment and structure

Probab=100.00  E-value=9e-44  Score=343.16  Aligned_cols=195  Identities=23%  Similarity=0.472  Sum_probs=178.1

Q ss_pred             chhhccCCHHHHHHHHHHHHHHHHhcCCCccCCCCCCCCCCCCcccCCCCCHHHHHHHhhH------HhhcCCHHHHHHH
Q 019751            6 RTAQGHGWLRPAVGVVELSQSIIQAVPLSSRKATGGSTEGTAPFLQLPHFTEAVIKKIARK------ELRDMSLQDRAEL   79 (336)
Q Consensus         6 ~~aa~~GwL~~al~~m~L~Q~IvQA~W~~~~~~~~~~~~~~spLlQLPh~~~e~v~kl~~k------~L~~~~~~er~~l   79 (336)
                      ..++.+||++ ++++|+|+|||+||+|+           .++||+|||||+...++++..+      +|.+|+++++..+
T Consensus       128 di~~~~g~~~-~~~~l~L~q~i~q~~w~-----------~~~pL~Qlp~i~~~~~~~l~~~~i~s~~~l~~~~~~e~~~l  195 (328)
T 3im1_A          128 DILSANGYLN-ATTAMDLAQMLIQGVWD-----------VDNPLRQIPHFNNKILEKCKEINVETVYDIMALEDEERDEI  195 (328)
T ss_dssp             HHHHHTTBTT-HHHHHHHHHHHHHTSCT-----------TSCGGGGSTTCCHHHHHHHHHTTCCSHHHHHHSCHHHHHHH
T ss_pred             HHHHcCCcHH-HHHHHHHHHHHHhhcCC-----------CCCceeCCCCCCHHHHHHHHhCCCCCHHHHhcCCHHHHHhH
Confidence            4678999999 99999999999999999           7899999999999999988764      8899999999988


Q ss_pred             HhhccCCChHHHHHHHHHHhcCCceeEEEEEEecCCccccCCCeEEEEEeeeeeccCCCCCCCccCCCCCCCCcccEEEE
Q 019751           80 LSQVGGFSSTEVQDVEMVLQMMPSLTVEVTCETEGEEGIQEGDIVTIQAWVTLKRGNGLIGALPHAPYYPFHKEENFWFL  159 (336)
Q Consensus        80 L~~~~gls~~q~~~v~~v~~~lP~I~v~~~~~V~ge~~It~g~~vtl~~~V~L~R~n~~~~~~v~aP~FP~~K~E~Wwvv  159 (336)
                      |+    +++.+++++.++|++||.|+|+  ++|+|++.|++|+.++|+  |+|+|.+......+||||||+.|.|+||||
T Consensus       196 l~----~~~~~~~~v~~~~~~~P~l~v~--~~v~~~~~i~~~~~~~l~--v~l~~~~~~~~~~~~ap~fp~~k~e~ww~~  267 (328)
T 3im1_A          196 LT----LTDSQLAQVAAFVNNYPNVELT--YSLNNSDSLISGVKQKIT--IQLTRDVEPENLQVTSEKYPFDKLESWWLV  267 (328)
T ss_dssp             CC----CCHHHHHHHHHHHHHCCCEEEE--EEETTGGGCCTTSEEEEE--EEEEESSCCSCCBCCCSSCCBCCBCCEEEE
T ss_pred             hC----CCHHHHHHHHHHHHhCCCEEEE--EEecCCCcccCCCeEEEE--EEEEECCCCCCCcEECCCCCCCccCCEEEE
Confidence            65    8999999999999999999976  678899899999999999  999998766667899999999999999999


Q ss_pred             EEECCCCeEEEEeeeeeccchhHHhhhhhhhhhhhcCCCCccchhhHHHHHHHhhhhcCceeEEEEEEcCCCCceeEEEE
Q 019751          160 LADSVSNNVWFSQKVSFMDEPAAITAASKAIEDTMEGSGATVKETSAAVREAAEKVRSGSRLVMGKIQAPAEGNYNLTCY  239 (336)
Q Consensus       160 lgD~~~n~Ll~~krv~~~~~~~~~~~~~k~i~~~~~~~g~~~k~~~~~~~~~~~~~k~~~~~v~l~F~aP~~G~~~l~l~  239 (336)
                      |||+++|+|+++||+++.+.                                       .+.++++|++|.+|+|+|+|+
T Consensus       268 v~d~~~~~l~~~kr~~~~~~---------------------------------------~~~~~~~f~~p~~g~~~~~v~  308 (328)
T 3im1_A          268 LGEVSKKELYAIKKVTLNKE---------------------------------------TQQYELEFDTPTSGKHNLTIW  308 (328)
T ss_dssp             EEEGGGTEEEEEEEECCCSS---------------------------------------EEEEEEEEECCCSEEEEEEEE
T ss_pred             EEECCCCeEEEEeeeccccc---------------------------------------ceEEEEEEEcCCCCcEEEEEE
Confidence            99999999999999988541                                       235789999998899999999


Q ss_pred             EEcCCCcccceEEEEEEEee
Q 019751          240 CLCDSWLGCDKRTNLKVKIL  259 (336)
Q Consensus       240 viSDsYiG~D~~~~i~l~V~  259 (336)
                      ||||+|+|||++++|+|+|.
T Consensus       309 ~vsD~ylG~d~~~~~~l~V~  328 (328)
T 3im1_A          309 CVCDSYLDADKELSFEINVK  328 (328)
T ss_dssp             EEESSCSSCCEEEEEEEEEC
T ss_pred             EEecCCcceeEEEEEEEEeC
Confidence            99999999999999999984

PyMOL of 3im1

>2q0z_X Protein Pro2281; SEC63, SEC, NESG, HR1979, structural genomics, translocase, northeast structural genomics consortium, PSI-2; 2.00A {Homo sapiens} SCOP: a.289.1.1 b.1.18.22	Back alignment and structure

>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B	Back alignment and structure

>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B	Back alignment and structure

>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A	Back alignment and structure

>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*	Back alignment and structure

>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		336
d2q0zx2		114	b.1.18.22 (X:209-322) Protein pro2281 {Human (Homo	1e-23
d2q0zx1		176	a.289.1.1 (X:33-208) Protein pro2281 {Human (Homo	1e-10

>d2q0zx2 b.1.18.22 (X:209-322) Protein pro2281 {Human (Homo sapiens) [TaxId: 9606]} Length = 114	Back information, alignment and structure


class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: Sec63 C-terminal domain-like
domain: Protein pro2281
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 91.8 bits (228), Expect = 1e-23
 Identities = 31/153 (20%), Positives = 60/153 (39%), Gaps = 43/153 (28%)

Query: 106 VEVTCETEGEEGIQEGDIVTIQAWVTLKRGNGLIGALPHAPYYPFHKEENFWFLLADSVS 165
           +E++ E   ++ I+ G  V +   V L+R   + G +  AP +P  +EE +W ++ D+ S
Sbjct: 2   IELSYEVVDKDSIRSGGPVVVL--VQLEREEEVTGPV-IAPLFPQKREEGWWVVIGDAKS 58

Query: 166 NNVWFSQKVSFMDEPAAITAASKAIEDTMEGSGATVKETSAAVREAAEKVRSGSRLVMGK 225
           N++   ++++                                              V   
Sbjct: 59  NSLISIKRLTLQQ----------------------------------------KAKVKLD 78

Query: 226 IQAPAEGNYNLTCYCLCDSWLGCDKRTNLKVKI 258
             APA G +N T Y + D+++GCD+     V +
Sbjct: 79  FVAPATGAHNYTLYFMSDAYMGCDQEYKFSVDV 111

PyMOL of d2q0zx2

>d2q0zx1 a.289.1.1 (X:33-208) Protein pro2281 {Human (Homo sapiens) [TaxId: 9606]} Length = 176	Back information, alignment and structure

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		336
d2q0zx2		114	Protein pro2281 {Human (Homo sapiens) [TaxId: 9606	99.98
d2q0zx1		176	Protein pro2281 {Human (Homo sapiens) [TaxId: 9606	99.57
d2a1ja1		62	DNA repair endonuclease XPF {Human (Homo sapiens)	87.19
d2i1qa1		60	DNA repair protein Rad51, N-terminal domain {Archa	83.49

>d2q0zx2 b.1.18.22 (X:209-322) Protein pro2281 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: Sec63 C-terminal domain-like
domain: Protein pro2281
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.98  E-value=5.2e-32  Score=223.62  Aligned_cols=113  Identities=27%  Similarity=0.528  Sum_probs=102.3

Q ss_pred             EEEEEEecCCccccCCCeEEEEEeeeeeccCCCCCCCccCCCCCCCCcccEEEEEEECCCCeEEEEeeeeeccchhHHhh
Q 019751          106 VEVTCETEGEEGIQEGDIVTIQAWVTLKRGNGLIGALPHAPYYPFHKEENFWFLLADSVSNNVWFSQKVSFMDEPAAITA  185 (336)
Q Consensus       106 v~~~~~V~ge~~It~g~~vtl~~~V~L~R~n~~~~~~v~aP~FP~~K~E~WwvvlgD~~~n~Ll~~krv~~~~~~~~~~~  185 (336)
                      |++++.|.+++.|.+|+.++|+  |+|+|.|.. ..++||||||++|.|+|||+|||+++|+|+++||+++.+.      
T Consensus         2 i~~~~~v~d~~~v~~g~~~~l~--V~l~R~~~~-~~~v~aP~fP~~K~E~Wwivlgd~~~~~L~~~krv~~~~~------   72 (114)
T d2q0zx2           2 IELSYEVVDKDSIRSGGPVVVL--VQLEREEEV-TGPVIAPLFPQKREEGWWVVIGDAKSNSLISIKRLTLQQK------   72 (114)
T ss_dssp             EEEEEEETTGGGCBTTSEEEEE--EEEEECSSC-CSSCCCTTCSSCCCCCEEEEEEETTTTEEEEEEEECCSSE------
T ss_pred             ceEEEEEcCCcceecCCeEEEE--EEEEEcCCc-CCcEECCCCCCCCcccEEEEEEECCCCEEEEEeEeccccc------
Confidence            5577889999999999999999  999998754 4489999999999999999999999999999999988651      


Q ss_pred             hhhhhhhhhcCCCCccchhhHHHHHHHhhhhcCceeEEEEEEcCCCCceeEEEEEEcCCCcccceEEEEEEEeecc
Q 019751          186 ASKAIEDTMEGSGATVKETSAAVREAAEKVRSGSRLVMGKIQAPAEGNYNLTCYCLCDSWLGCDKRTNLKVKILKR  261 (336)
Q Consensus       186 ~~k~i~~~~~~~g~~~k~~~~~~~~~~~~~k~~~~~v~l~F~aP~~G~~~l~l~viSDsYiG~D~~~~i~l~V~~~  261 (336)
                                                        ..++++|++|.+|.|+|+||||||||+|||++++|+|+|.++
T Consensus        73 ----------------------------------~~~~l~f~~p~~G~~~~~l~~~sDsY~G~D~~~~~~~~V~eA  114 (114)
T d2q0zx2          73 ----------------------------------AKVKLDFVAPATGAHNYTLYFMSDAYMGCDQEYKFSVDVKEA  114 (114)
T ss_dssp             ----------------------------------EEEEEEEECCSSEEEEEEEEEEESSCSSCCEEEEEEEEEBCC
T ss_pred             ----------------------------------eEEEEEEeCCCCCeEEEEEEEEcccccccceEEEEEEEeecC
Confidence                                              247799999988999999999999999999999999999764

PyMOL of d2q0zx2

>d2q0zx1 a.289.1.1 (X:33-208) Protein pro2281 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2a1ja1 a.60.2.5 (A:837-898) DNA repair endonuclease XPF {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2i1qa1 a.60.4.1 (A:5-64) DNA repair protein Rad51, N-terminal domain {Archaeon Methanococcus voltae [TaxId: 2188]}	Back information, alignment and structure