Citrus Sinensis ID: 019764

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330------
Protein Sequence
MMPAKPDENRQLDRGAQSVSQSAIYSQRPWWSGTGTGASLAEAAAPKSSREQPNGSVVNGATYSQDGINGQEHAHLKHIPSSTPLTMGERLEQNSQMELVGHSIVLTSYPYTDPQHVGVITPYVPQAMIPPQLYGMHQARMPLPLEMEEEPVYVNAKQYRGILRRRQSRAKAELEKKVIKARKVTFHSLKGATIFYNKTLQGLDTYALFSLQPYLHESRHQHAMRRARGCGGRFLNTKKLNDNAANSAEKGMNSGADSSKGSTNGTGSVDSSIVQQERAMEENAHMEHTSSNSNSNNRSLLSMYNTSSGSVEGNFLGQQRGSMQGNGAPRGALPVK
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccHHHHHcccccccHHHHHHHHHHccccccccccccccccHHHHccccccccccccccccccccccccccccHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEcccccccccccccccccccccccccccccccEEEcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHcccccccHHHHHHHHHccccccccEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
mmpakpdenrqldrgaqsvsqsaiysqrpwwsgtgtgaslaeaaapkssreqpngsvvngatysqdgingqehahlkhipsstpltmgerleqnsqmELVGHSIvltsypytdpqhvgvitpyvpqamippqlygmhqarmplplemeeepvyvnAKQYRGILRRRQSRAKAELEKKVIKARKVTFHSLKGATIFYNktlqgldtyalfslqpylhesrHQHAMRRArgcggrflntkklndNAANSaekgmnsgadsskgstngtgsvdsSIVQQERAMEEnahmehtssnsnsnnRSLLSMYntssgsvegnflgqqrgsmqgngaprgalpvk
Flexible Loop (DISEMBL)
mmpakpdenrqldrgaQSVSqsaiysqrpwwsGTGTGASLAEAaapkssreqpngsVVNGATYSQDGINGQEHAHLKHIPSSTPLTMGERLEQNSQMELVGHSIVLTSYPYTDPQHVGVITPYVPQAMIPPQLYGMHQARMPLPLEMEEEPVYVNAKQYRGILRRRQSRAKAELEKKvikarkvtfhslkgaTIFYNKTLQGLDTYALFSLQPYLHESRHQHAMRRARGCGGRFLNTKKLNDNAANSAEKgmnsgadsskgstngtgsvDSSIVQQERAMEENAhmehtssnsnsnnRSLLSMYNTSSGSVEGNFLGqqrgsmqgngaprgalpvk
Low Complexity Region (SEG)
MMPAKPDENRQLDRGAQSVSQSAIYSQRPWWSGTGTGASLAEAAAPKSSREQPNGSVVNGATYSQDGINGQEHAHLKHIPSSTPLTMGERLEQNSQMELVGHSIVLTSYPYTDPQHVGVITPYVPQAMIPPQLYGMHQARmplplemeeepVYVNAKQYRGILRRRQSRAKAELEKKVIKARKVTFHSLKGATIFYNKTLQGLDTYALFSLQPYLHESRHQHAMRRARGCGGRFLNTKKLNDNAANSAEKGMNSGADSSKGSTNGTGSVDSSIVQQERAMEENAHMEHTssnsnsnnrsllsMYNTSSGSVEGNFLGQQRGSMQGNGAPRGALPVK
Disordered region (IsUnstruct)
*****************************WW******************************************************************ELVGHSIVLTSYPYTDPQHVGVITPYVPQAMIPPQLYGMHQARMPLPLEM*EEPVYVNAKQYRGILRR********LEKKVIKARKVTFHSLKGATIFYNKTLQGLDTYALFSLQPYLHES**********GCGGRF******************************************************************************************************
Disordered Region (DISOPRED)
********************************************************************************************************VLTSYPYTDPQHVGVIT*************************MEEEPVYVNAKQYRGILRRRQSR********************************************YLHESRHQHAMRRARGCGGRF******************************************************************************************************
Disordered Region (DISEMBL)
************************YSQRPWWSGTGTG******************SVVNGATYSQDGINGQEHAHLKHIPSSTPLTMGERLEQNSQMELVGHSIVLTSYPYTDPQHVGVITPYVPQAMIPPQLYGMHQARMPLPLEMEEEPVYVNAKQYRGIL***********EKKVIKARKVTFHSLKGATIFYNKTLQGLDTYALFSLQPYLHESRHQHAMRRARGCGGRFLNTKKLNDNAAN***************************VQQERAME**************NNRSLLSMYNTSSGSVEGNFLGQQRGS**************
Disordered Region (DISPRO)
******************************************************************************************LEQNSQMELVGHSIVLTSYPYTDPQHVGVITPYVPQAMIPPQLYGMHQARMPLPLEMEEEPVYVNAKQYRGILRRRQSRAKAELEKKVIKARKVTFHSLKGATIFYNKTLQGLDTYALFSLQPYLHESRHQHAMRRARGCG*R*L*****************************************************************************************************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MMPAKPDENRQLDRGAQSVSQSAIYSQRPWWSGTGTGASLAEAAAPKSSREQPNGSVVNGATYSQDGINGQEHAHLKHIPSSTPLTMGERLEQNSQMELVGHSIVLTSYPYTDPQHVGVITPYVPQAMIPPQLYGMHQARMPLPLEMEEEPVYVNAKQYRGILRRRQSRAKAELEKKVIKARKVTFHSLKGATIFYNKTLQGLDTYALFSLQPYLHESRHQHAMRRARGCGGRFLNTKKLNDNAANSAEKGMNSGADSSKGSTNGTGSVDSSIVQQERAMEENAHMEHTSSNSNSNNRSLLSMYNTSSGSVEGNFLGQQRGSMQGNGAPRGALPVK
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	336	2.2.26 [Sep-21-2011]
Q9LXV5	272	Nuclear transcription fac	yes	no	0.681	0.841	0.361	6e-30
Q945M9	303	Nuclear transcription fac	no	no	0.398	0.442	0.473	9e-30
Q84JP1	190	Nuclear transcription fac	no	no	0.383	0.678	0.440	7e-27
Q93ZH2	340	Nuclear transcription fac	no	no	0.309	0.305	0.463	1e-24
Q8VY64	198	Nuclear transcription fac	no	no	0.372	0.631	0.425	2e-24
Q9LNP6	328	Nuclear transcription fac	no	no	0.297	0.304	0.467	4e-24
Q9SYH4	308	Nuclear transcription fac	no	no	0.318	0.347	0.416	7e-22
Q9LVJ7	308	Nuclear transcription fac	no	no	0.288	0.314	0.449	3e-21
Q9M9X4	295	Nuclear transcription fac	no	no	0.404	0.461	0.363	5e-21
Q8LFU0	269	Nuclear transcription fac	no	no	0.327	0.408	0.375	2e-16

>sp|Q9LXV5|NFYA1_ARATH Nuclear transcription factor Y subunit A-1 OS=Arabidopsis thaliana GN=NFYA1 PE=2 SV=1

 Score =  131 bits (330), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 106/293 (36%), Positives = 141/293 (48%), Gaps = 64/293 (21%)

Query: 2   MPAKPD-ENRQLDRGAQSVSQSAIYSQRPWWSGTGTG----ASLAEAAAPKSSREQPNGS 56
           M +KP  EN +      +V Q  +Y++ PWW     G    A  +   +  SS + PNGS
Sbjct: 1   MQSKPGRENEEEVNNHHAVQQPMMYAE-PWWKNNSFGVVPQARPSGIPSNSSSLDCPNGS 59

Query: 57  VVNGA-TYSQDG-INGQEHAHLKHIPSSTPLTMGER--LEQNSQM--------------- 97
             N   + S+DG +NG+     K   ++T     +   +E N                  
Sbjct: 60  ESNDVHSASEDGALNGENDGTWKDSQAATSSRSVDNHGMEGNDPALSIRNMHDQPLVQPP 119

Query: 98  ELVGHSIVLTSYPYTDPQHVGVITPYVPQAMIPPQLYGMHQARMPLPLEMEEEPVYVNAK 157
           ELVGH I     PY DP + G++  Y  Q +      GM + R  LPL+M +EPVYVNAK
Sbjct: 120 ELVGHYIACVPNPYQDPYYGGLMGAYGHQQLGFRPYLGMPRERTALPLDMAQEPVYVNAK 179

Query: 158 QYRGILRRRQSRAKAELEKKVIKARKVTFHSLKGATIFYNKTLQGLDTYALFSLQPYLHE 217
           QY GILRRR++RAKAELE+KVI+ RK                             PYLHE
Sbjct: 180 QYEGILRRRKARAKAELERKVIRDRK-----------------------------PYLHE 210

Query: 218 SRHQHAMRRARGCGGRFLNTKKLNDNAANSAEKGMNSGA-DSSKGS-TNGTGS 268
           SRH+HAMRRAR  GGRF    ++        E G ++G  D  +GS TN +GS
Sbjct: 211 SRHKHAMRRARASGGRFAKKSEV--------EAGEDAGGRDRERGSATNSSGS 255

Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.
Arabidopsis thaliana (taxid: 3702)

>sp|Q945M9|NFYA9_ARATH Nuclear transcription factor Y subunit A-9 OS=Arabidopsis thaliana GN=NFYA9 PE=2 SV=1

 Score =  131 bits (329), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 81/171 (47%), Positives = 98/171 (57%), Gaps = 37/171 (21%)

Query: 98  ELVGHSI-VLTSYPYTDPQHVGVITPY--VPQAMIPPQLYGMHQARMPLPLEMEEEPVYV 154
           +LVGH++   +S PY DP + GV+  Y   P   +P    GM  +RMPLP EM +EPV+V
Sbjct: 113 QLVGHTVGWASSNPYQDPYYAGVMGAYGHHPLGFVP--YGGMPHSRMPLPPEMAQEPVFV 170

Query: 155 NAKQYRGILRRRQSRAKAELEKKVIKARKVTFHSLKGATIFYNKTLQGLDTYALFSLQPY 214
           NAKQY+ ILRRRQ+RAKAELEKK+IK+RK                             PY
Sbjct: 171 NAKQYQAILRRRQARAKAELEKKLIKSRK-----------------------------PY 201

Query: 215 LHESRHQHAMRRARGCGGRFLNTKKLNDNAAN-SAEKGMNSGADSSKGSTN 264
           LHESRHQHAMRR RG GGRF   KK N  A+   AE+  N     S  S+N
Sbjct: 202 LHESRHQHAMRRPRGTGGRF--AKKTNTEASKRKAEEKSNGHVTQSPSSSN 250

Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.

Arabidopsis thaliana (taxid: 3702)

>sp|Q84JP1|NFYA7_ARATH Nuclear transcription factor Y subunit A-7 OS=Arabidopsis thaliana GN=NFYA7 PE=2 SV=1

 Score =  121 bits (303), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 71/161 (44%), Positives = 91/161 (56%), Gaps = 32/161 (19%)

Query: 109 YPYTDPQHVGVITPYV-PQAMIPPQLYGMHQARMPLPLEMEEEPVYVNAKQYRGILRRRQ 167
           YPY DP +  +  P   P   +  QL G+ Q  +PLP +  EEPV+VNAKQY GILRRRQ
Sbjct: 58  YPYPDPYYRSIFAPPPQPYTGVHLQLMGVQQQGVPLPSDAVEEPVFVNAKQYHGILRRRQ 117

Query: 168 SRAKAELEKKVIKARKVTFHSLKGATIFYNKTLQGLDTYALFSLQPYLHESRHQHAMRRA 227
           SRA+ E + KVIK+RK                             PYLHESRH HA+RR 
Sbjct: 118 SRARLESQNKVIKSRK-----------------------------PYLHESRHLHAIRRP 148

Query: 228 RGCGGRFLNTKKLNDNAANSA--EKGMNSGADSSKGSTNGT 266
           RGCGGRFLN KK +++  +S+  EK   S   S+  +++GT
Sbjct: 149 RGCGGRFLNAKKEDEHHEDSSHEEKSNLSAGKSAMAASSGT 189

Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.

Arabidopsis thaliana (taxid: 3702)

>sp|Q93ZH2|NFYA3_ARATH Nuclear transcription factor Y subunit A-3 OS=Arabidopsis thaliana GN=NFYA3 PE=2 SV=2

 Score =  114 bits (284), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 63/136 (46%), Positives = 79/136 (58%), Gaps = 32/136 (23%)

Query: 108 SYPYTDPQHVGVITP-YVPQA-MIPPQLYGMHQARMPLPLEMEE-EPVYVNAKQYRGILR 164
           S+ Y DP + G++   Y+PQA    PQ+  M   R+PLP E+ E +PV+VNAKQY  I+R
Sbjct: 134 SFHYADPHYGGLLAATYLPQAPTCNPQMVSMIPGRVPLPAELTETDPVFVNAKQYHAIMR 193

Query: 165 RRQSRAKAELEKKVIKARKVTFHSLKGATIFYNKTLQGLDTYALFSLQPYLHESRHQHAM 224
           RRQ RAK E + K+I+ARK                             PYLHESRH HA+
Sbjct: 194 RRQQRAKLEAQNKLIRARK-----------------------------PYLHESRHVHAL 224

Query: 225 RRARGCGGRFLNTKKL 240
           +R RG GGRFLNTKKL
Sbjct: 225 KRPRGSGGRFLNTKKL 240

Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8VY64|NFYA4_ARATH Nuclear transcription factor Y subunit A-4 OS=Arabidopsis thaliana GN=NFYA4 PE=2 SV=1

 Score =  113 bits (283), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 68/160 (42%), Positives = 86/160 (53%), Gaps = 35/160 (21%)

Query: 109 YPYTDPQHVGVIT--PYVPQAM--IPPQLYGMHQARMPLPLEMEEEPVYVNAKQYRGILR 164
           YPY DP +  V     Y+P     +  QL GM Q  +PL  +  EEPV+VNAKQY GILR
Sbjct: 53  YPYPDPYYRSVFAQQAYLPHPYPGVQLQLMGMQQPGVPLQCDAVEEPVFVNAKQYHGILR 112

Query: 165 RRQSRAKAELEKKVIKARKVTFHSLKGATIFYNKTLQGLDTYALFSLQPYLHESRHQHAM 224
           RRQSRAK E   + IKA+K                             PY+HESRH HA+
Sbjct: 113 RRQSRAKLEARNRAIKAKK-----------------------------PYMHESRHLHAI 143

Query: 225 RRARGCGGRFLNTKKLNDNAANSAEKGMNSGADSSKGSTN 264
           RR RGCGGRFLN KK  +N  +  E+   S  ++S+ S++
Sbjct: 144 RRPRGCGGRFLNAKK--ENGDHKEEEEATSDENTSEASSS 181

Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LNP6|NFYA8_ARATH Nuclear transcription factor Y subunit A-8 OS=Arabidopsis thaliana GN=NFYA8 PE=2 SV=2

 Score =  112 bits (280), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 65/139 (46%), Positives = 80/139 (57%), Gaps = 39/139 (28%)

Query: 108 SYPYTDPQHVGVITP--YVPQAMI-PPQLYGMHQARMPLPLEM-EEEPVYVNAKQYRGIL 163
           S+ Y DP H G + P  Y+PQA I  PQ+      R+PLP ++ E EPV+VNAKQ+  I+
Sbjct: 132 SFHYADP-HFGGLMPAAYLPQATIWNPQM-----TRVPLPFDLIENEPVFVNAKQFHAIM 185

Query: 164 RRRQSRAKAELEKKVIKARKVTFHSLKGATIFYNKTLQGLDTYALFSLQPYLHESRHQHA 223
           RRRQ RAK E + K+IKARK                             PYLHESRH HA
Sbjct: 186 RRRQQRAKLEAQNKLIKARK-----------------------------PYLHESRHVHA 216

Query: 224 MRRARGCGGRFLNTKKLND 242
           ++R RG GGRFLNTKKL +
Sbjct: 217 LKRPRGSGGRFLNTKKLQE 235

Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SYH4|NFYA5_ARATH Nuclear transcription factor Y subunit A-5 OS=Arabidopsis thaliana GN=NFYA5 PE=2 SV=1

 Score =  105 bits (261), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 57/137 (41%), Positives = 78/137 (56%), Gaps = 30/137 (21%)

Query: 124 VPQAMIPPQLYGMHQARMPLPLEMEE-EPVYVNAKQYRGILRRRQSRAKAELEKKVIKAR 182
            P A+   ++ G+  +R+PLP  ++E EP++VNAKQY  ILRRR+ RAK E + K+IK R
Sbjct: 151 TPTALPHLEMMGLVSSRVPLPHHIQENEPIFVNAKQYHAILRRRKHRAKLEAQNKLIKCR 210

Query: 183 KVTFHSLKGATIFYNKTLQGLDTYALFSLQPYLHESRHQHAMRRARGCGGRFLNTKKLND 242
           K                             PYLHESRH HA++RARG GGRFLNTKKL +
Sbjct: 211 K-----------------------------PYLHESRHLHALKRARGSGGRFLNTKKLQE 241

Query: 243 NAANSAEKGMNSGADSS 259
           ++ +     M +G + S
Sbjct: 242 SSNSLCSSQMANGQNFS 258

Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters (By similarity). Involved in the blue light (BL) and abscisic acid (ABA) signaling pathways.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LVJ7|NFYA6_ARATH Nuclear transcription factor Y subunit A-6 OS=Arabidopsis thaliana GN=NFYA6 PE=2 SV=1

 Score =  102 bits (255), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 58/129 (44%), Positives = 73/129 (56%), Gaps = 32/129 (24%)

Query: 114 PQHVGVIT-PYVPQAMIP-PQLYGMHQARMPLPLEM-EEEPVYVNAKQYRGILRRRQSRA 170
           P   G ++ PY  Q  +  PQ+ G+  +RMPLP  + E EP++VNAKQY+ ILRRR+ RA
Sbjct: 132 PHFNGFLSFPYASQHTVQHPQIRGLVPSRMPLPHNIPENEPIFVNAKQYQAILRRRERRA 191

Query: 171 KAELEKKVIKARKVTFHSLKGATIFYNKTLQGLDTYALFSLQPYLHESRHQHAMRRARGC 230
           K E + K+IK RK                             PYLHESRH HA++R RG 
Sbjct: 192 KLEAQNKLIKVRK-----------------------------PYLHESRHLHALKRVRGS 222

Query: 231 GGRFLNTKK 239
           GGRFLNTKK
Sbjct: 223 GGRFLNTKK 231

Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9M9X4|NFYA2_ARATH Nuclear transcription factor Y subunit A-2 OS=Arabidopsis thaliana GN=NFYA2 PE=2 SV=1

 Score =  102 bits (253), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 64/176 (36%), Positives = 92/176 (52%), Gaps = 40/176 (22%)

Query: 105 VLTSYPYTDPQHVGVITPYVPQAMIPPQLYGMHQARMPLPLEMEEEPVYVNAKQYRGILR 164
           + T YPY + Q+ GV++ Y  Q+ +           +PL +E E+  +YVN+KQY GI+R
Sbjct: 101 IYTKYPYGEQQYYGVVSAYGSQSRV----------MLPLNMETEDSTIYVNSKQYHGIIR 150

Query: 165 RRQSRAKAE--LEKKVIKARKVTFHSLKGATIFYNKTLQGLDTYALFSLQPYLHESRHQH 222
           RRQSRAKA   L++K + +R                             +PY+H SRH H
Sbjct: 151 RRQSRAKAAAVLDQKKLSSR---------------------------CRKPYMHHSRHLH 183

Query: 223 AMRRARGCGGRFLNTKKLN-DNAANSAEKGMNSGADSSKGSTNGTGSVDSSIVQQE 277
           A+RR RG GGRFLNTK  N +N+  +A+KG  S    S+     + S +S +V  E
Sbjct: 184 ALRRPRGSGGRFLNTKSQNLENSGTNAKKGDGSMQIQSQPKPQQSNSQNSEVVHPE 239

Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8LFU0|NFYAA_ARATH Nuclear transcription factor Y subunit A-10 OS=Arabidopsis thaliana GN=NFYA10 PE=2 SV=2

 Score = 87.0 bits (214), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 60/160 (37%), Positives = 83/160 (51%), Gaps = 50/160 (31%)

Query: 104 IVLTSYPYTDPQHVGVITPYVPQAMIPPQLYGMHQARMPLPLEMEEE---PVYVNAKQYR 160
           ++ T +P+ + Q+ GV++ Y  Q             R+ +PL+ME E    +YVN+KQY 
Sbjct: 95  MMYTKHPHVE-QYYGVVSAYGSQ---------RSSGRVMIPLKMETEEDGTIYVNSKQYH 144

Query: 161 GILRRRQSRAKAELEKKVIKARKVTFHSLKGATIFYNKTLQGLDTYALFSLQPYLHESRH 220
           GI+RRRQSRAKAE   K+ + RK                             PY+H SRH
Sbjct: 145 GIIRRRQSRAKAE---KLSRCRK-----------------------------PYMHHSRH 172

Query: 221 QHAMRRARGCGGRFLNTKKLNDNAANSAEKGMNSGADSSK 260
            HAMRR RG GGRFLNTK      A++A++   S + SS+
Sbjct: 173 LHAMRRPRGSGGRFLNTK-----TADAAKQSKPSNSQSSE 207

Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	336
225450115	346	PREDICTED: nuclear transcription factor	0.907	0.881	0.510	6e-82
297736254	405	unnamed protein product [Vitis vinifera]	0.910	0.755	0.509	6e-82
224104075	376	predicted protein [Populus trichocarpa]	0.848	0.757	0.5	2e-76
255553570	336	Nuclear transcription factor Y subunit A	0.889	0.889	0.481	6e-76
343157308	377	CCAAT-binding transcription factor subun	0.833	0.742	0.493	1e-75
449436305	318	PREDICTED: nuclear transcription factor	0.901	0.952	0.492	3e-73
449488843	318	PREDICTED: nuclear transcription factor	0.901	0.952	0.490	2e-72
356544165	303	PREDICTED: nuclear transcription factor	0.842	0.933	0.484	3e-68
388523193	304	nuclear transcription factor Y subunit A	0.845	0.934	0.427	9e-56
363814344	304	uncharacterized protein LOC100789738 [Gl	0.839	0.927	0.465	5e-54

>gi|225450115|ref|XP_002278849.1| PREDICTED: nuclear transcription factor Y subunit A-1-like [Vitis vinifera]

 Score =  310 bits (794), Expect = 6e-82,   Method: Compositional matrix adjust.
 Identities = 192/376 (51%), Positives = 224/376 (59%), Gaps = 71/376 (18%)

Query: 2   MPAKPD-ENRQLDRGAQSVSQSAIYSQRPWWSGTGTGA----SLAEAAAPKSSRE----- 51
           MP KP  E+R+++ G +S   S +YSQ PWW G G  A    +L  + +  +S E     
Sbjct: 1   MPTKPKIEDRRIEPGGKSNPSSTVYSQ-PWWHGVGNNAISPAALGGSPSKSTSVEHLNSH 59

Query: 52  --------QPNGSVVNGATYSQ----------DGINGQEHAHLKHIPSSTPLTMGERLEQ 93
                   Q NG + +G T+++          DG NGQEH HL    SST   M E LE 
Sbjct: 60  ITSNGFQLQANGRLDDGTTFNKGTQPTVALQSDGRNGQEHQHLNPTASSTLPIMSEHLEP 119

Query: 94  NSQMELVGHSIVLTSYPYTDPQHVGVITPYVPQAMIPPQLYGMHQARMPLPLEMEEEPVY 153
           NSQMELVGHSIVLTSYPY DP +VG++T Y PQAM+ P L+GMHQ RMPLPLEMEEEPVY
Sbjct: 120 NSQMELVGHSIVLTSYPYQDPHNVGIMTSYGPQAMVHPHLFGMHQPRMPLPLEMEEEPVY 179

Query: 154 VNAKQYRGILRRRQSRAKAELEKKVIKARKVTFHSLKGATIFYNKTLQGLDTYALFSLQP 213
           VNAKQY GILRRRQSRAKAELEKK IK RK                             P
Sbjct: 180 VNAKQYHGILRRRQSRAKAELEKKAIKVRK-----------------------------P 210

Query: 214 YLHESRHQHAMRRARGCGGRFLNTKKLNDNAAN-SAEKGMNSGADSSKGS---------- 262
           YLHESRHQHAMRRARGCGGRFLNTKKL++N AN +AEKG  SGA  S  S          
Sbjct: 211 YLHESRHQHAMRRARGCGGRFLNTKKLDNNDANTTAEKGSVSGAALSTQSASSSGSEHLP 270

Query: 263 TNGTGSVDSSIVQQERAMEENAHM--EHTSSNSNSNNRSLLSMYNTSSGSVEGNFLGQQR 320
           TN + ++DSS VQQE        M   HT SN N N   L S Y++S+GS  G+  GQ R
Sbjct: 271 TNSSRNLDSSSVQQEEKGRTIQDMLEAHTYSNGNRNGHGLSSAYHSSNGSEGGDCFGQPR 330

Query: 321 GSMQGNGAPRGALPVK 336
            +MQ N AP  ALP+K
Sbjct: 331 ENMQLNTAPHRALPIK 346

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297736254|emb|CBI24892.3| unnamed protein product [Vitis vinifera]

 Score =  310 bits (794), Expect = 6e-82,   Method: Compositional matrix adjust.
 Identities = 192/377 (50%), Positives = 225/377 (59%), Gaps = 71/377 (18%)

Query: 1   MMPAKPD-ENRQLDRGAQSVSQSAIYSQRPWWSGTGTGA----SLAEAAAPKSSRE---- 51
           +MP KP  E+R+++ G +S   S +YSQ PWW G G  A    +L  + +  +S E    
Sbjct: 59  IMPTKPKIEDRRIEPGGKSNPSSTVYSQ-PWWHGVGNNAISPAALGGSPSKSTSVEHLNS 117

Query: 52  ---------QPNGSVVNGATYSQ----------DGINGQEHAHLKHIPSSTPLTMGERLE 92
                    Q NG + +G T+++          DG NGQEH HL    SST   M E LE
Sbjct: 118 HITSNGFQLQANGRLDDGTTFNKGTQPTVALQSDGRNGQEHQHLNPTASSTLPIMSEHLE 177

Query: 93  QNSQMELVGHSIVLTSYPYTDPQHVGVITPYVPQAMIPPQLYGMHQARMPLPLEMEEEPV 152
            NSQMELVGHSIVLTSYPY DP +VG++T Y PQAM+ P L+GMHQ RMPLPLEMEEEPV
Sbjct: 178 PNSQMELVGHSIVLTSYPYQDPHNVGIMTSYGPQAMVHPHLFGMHQPRMPLPLEMEEEPV 237

Query: 153 YVNAKQYRGILRRRQSRAKAELEKKVIKARKVTFHSLKGATIFYNKTLQGLDTYALFSLQ 212
           YVNAKQY GILRRRQSRAKAELEKK IK RK                             
Sbjct: 238 YVNAKQYHGILRRRQSRAKAELEKKAIKVRK----------------------------- 268

Query: 213 PYLHESRHQHAMRRARGCGGRFLNTKKLNDNAAN-SAEKGMNSGADSSKGS--------- 262
           PYLHESRHQHAMRRARGCGGRFLNTKKL++N AN +AEKG  SGA  S  S         
Sbjct: 269 PYLHESRHQHAMRRARGCGGRFLNTKKLDNNDANTTAEKGSVSGAALSTQSASSSGSEHL 328

Query: 263 -TNGTGSVDSSIVQQERAMEENAHM--EHTSSNSNSNNRSLLSMYNTSSGSVEGNFLGQQ 319
            TN + ++DSS VQQE        M   HT SN N N   L S Y++S+GS  G+  GQ 
Sbjct: 329 PTNSSRNLDSSSVQQEEKGRTIQDMLEAHTYSNGNRNGHGLSSAYHSSNGSEGGDCFGQP 388

Query: 320 RGSMQGNGAPRGALPVK 336
           R +MQ N AP  ALP+K
Sbjct: 389 RENMQLNTAPHRALPIK 405

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224104075|ref|XP_002313307.1| predicted protein [Populus trichocarpa] gi|222849715|gb|EEE87262.1| predicted protein [Populus trichocarpa]

 Score =  292 bits (747), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 180/360 (50%), Positives = 216/360 (60%), Gaps = 75/360 (20%)

Query: 2   MPAKPD-ENRQLDRGAQSVSQSAIYSQRPWWSGTGTGASLAEAAAPKSSREQPNGSVVNG 60
           MPAK + E+R+LD    S  Q+ IYSQ PWW   G  +SL + A+  SS E  NGS+ N 
Sbjct: 1   MPAKSEKEDRRLDHSGPSPFQTNIYSQ-PWWRDVGNSSSLGDTASKLSSVEHLNGSLANA 59

Query: 61  ATYSQ-----------------------DGINGQEHAHLKHIPSSTPLTMGERLEQNSQM 97
           A  SQ                       D  N QEH HLKHIPS T +TMG  LE NSQM
Sbjct: 60  AIQSQVNTGLQKGAMVNKDMQTDVTSQSDESNEQEH-HLKHIPSPTTVTMGGHLEPNSQM 118

Query: 98  ELVGHSIVLTSYPYTDPQHVGVITPYVPQAMIPPQLYGMHQARMPLPLEMEEEPVYVNAK 157
           ELVGHSIVLTS+PYTDPQ+ G+   Y  QAM+P QLYGM  ARMPLPLEMEEEPVYVNAK
Sbjct: 119 ELVGHSIVLTSHPYTDPQYGGMFASYGAQAMVP-QLYGMPHARMPLPLEMEEEPVYVNAK 177

Query: 158 QYRGILRRRQSRAKAELEKKVIKARKVTFHSLKGATIFYNKTLQGLDTYALFSLQPYLHE 217
           Q+ GI+RRRQ+RAKAELEKK +K RK                             PYLHE
Sbjct: 178 QFHGIMRRRQARAKAELEKKAVKVRK-----------------------------PYLHE 208

Query: 218 SRHQHAMRRARGCGGRFLNTKKLNDNAAN-SAEKGMNSGADSSKGS----------TNGT 266
           SRHQHA+RRARGCGGRFLNTKKL+++A N ++EKG+NS A+ SK S          T G+
Sbjct: 209 SRHQHALRRARGCGGRFLNTKKLDNSATNPTSEKGINSVANISKQSYSFSVSECFPTEGS 268

Query: 267 GSVDSSIVQQERAMEENAHMEHTSSNSNSNNRSLLSMYNTSSGSVEGNFLGQQRGSMQGN 326
           G ++SS         E       SSN + N  +L S Y++SS   +G+FLGQQ+ +  GN
Sbjct: 269 GDLNSS------GDLEEGKGSQASSNGHGNGHALSSRYHSSSH--DGSFLGQQKETTHGN 320

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255553570|ref|XP_002517826.1| Nuclear transcription factor Y subunit A-1, putative [Ricinus communis] gi|223543098|gb|EEF44633.1| Nuclear transcription factor Y subunit A-1, putative [Ricinus communis]

 Score =  290 bits (743), Expect = 6e-76,   Method: Compositional matrix adjust.
 Identities = 178/370 (48%), Positives = 222/370 (60%), Gaps = 71/370 (19%)

Query: 2   MPAKPD-ENRQLDRGAQSVSQSAIYSQRPWWSGTGTGASLAEAAAPKSSREQPNGSVVNG 60
           MPAK +  +++LD+G   V QS+IYSQ PWW G G  ++  E+ +  SS +  NGS+ NG
Sbjct: 1   MPAKLETRDQRLDQG---VFQSSIYSQ-PWWRGVGNSSTFEESTSKSSSSDHLNGSLSNG 56

Query: 61  ATYSQ-----------------------DGINGQEHAHLKHIPSSTPLTMGERLEQNSQM 97
              SQ                       DGINGQ H HLK +PSS P+TM   +E NSQM
Sbjct: 57  PIRSQANLTLDNGANSNKDTQVAVSSQSDGINGQGH-HLKQVPSSAPVTMVGHVEPNSQM 115

Query: 98  ELVGHSIVLTSYPYTDPQHVGVITPYVPQAMIPPQLYGMHQARMPLPLEMEEEPVYVNAK 157
           ELVGHSIVLTSYPY+D Q+ G++  Y PQAM+ PQLYGMH ARM LPLEMEEEPVYVNAK
Sbjct: 116 ELVGHSIVLTSYPYSDAQYGGMLPSYAPQAMVTPQLYGMHHARMALPLEMEEEPVYVNAK 175

Query: 158 QYRGILRRRQSRAKAELEKKVIKARKVTFHSLKGATIFYNKTLQGLDTYALFSLQPYLHE 217
           Q+ GILRRRQ+RAKAE+EKK IKARK                             PYLHE
Sbjct: 176 QFNGILRRRQARAKAEIEKKAIKARK-----------------------------PYLHE 206

Query: 218 SRHQHAMRRARGCGGRFLNTKKLNDNAANSA-EKGMNSGADSSKGST----------NGT 266
           SRHQHAMRRARGCGGRFL++KK   N  N A +  +NS  ++S  S           NGT
Sbjct: 207 SRHQHAMRRARGCGGRFLSSKKPESNTKNPASDNDVNSCINASTRSAILTGSEWLQKNGT 266

Query: 267 GSVDSSIVQQERAMEENAHMEHTSSNSNSNNRSLLSMYNTSSGS-VEGNFLGQQRGSMQG 325
            ++DS+  + + + + +    H+SS+ N N   L S+Y+ SSG  ++  FL QQR S   
Sbjct: 267 RNLDSANGEGKGSTDHDM-QSHSSSHGNGNGHGLSSIYHPSSGDGLDRGFLVQQRASTHW 325

Query: 326 NGAPRGALPV 335
           NG   GALP+
Sbjct: 326 NGVTNGALPI 335

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|343157308|gb|AEL95437.1| CCAAT-binding transcription factor subunit B [Populus euphratica]

 Score =  289 bits (739), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 177/359 (49%), Positives = 209/359 (58%), Gaps = 79/359 (22%)

Query: 2   MPAKPD-ENRQLDRGAQSVSQSAIYSQRPWWSGTGTGASLAEAAAPKSSREQPNGSVVNG 60
           MPAK + E+R+LD    S  Q+ IYSQ PWW   G   SL + A+  SS    NGS+ N 
Sbjct: 1   MPAKSEKEDRRLDHRGPSPFQTNIYSQ-PWWRDVGNSPSLGDTASKLSSVGNLNGSLANA 59

Query: 61  ATYSQ-----------------------DGINGQEHAHLKHIPSSTPLTMGERLEQNSQM 97
           A  SQ                       D  NGQEH HLKHIPS T +TMG  LE NSQM
Sbjct: 60  AIQSQVNTGLQKGAMVNKDMQTDVTSQSDESNGQEH-HLKHIPSPTTVTMGGHLEPNSQM 118

Query: 98  ELVGHSIVLTSYPYTDPQHVGVITPYVPQAMIPPQLYGMHQARMPLPLEMEEEPVYVNAK 157
           ELVGHSIVLTS+PYTDPQH G+   Y  QAM+P QLYGM QARMPLPLEMEEEPVYVNAK
Sbjct: 119 ELVGHSIVLTSHPYTDPQHGGMFASYGAQAMVP-QLYGMPQARMPLPLEMEEEPVYVNAK 177

Query: 158 QYRGILRRRQSRAKAELEKKVIKARKVTFHSLKGATIFYNKTLQGLDTYALFSLQPYLHE 217
           Q+ GI+RRRQ+RAKAELEKK +K RK                             PYLHE
Sbjct: 178 QFHGIMRRRQARAKAELEKKAVKVRK-----------------------------PYLHE 208

Query: 218 SRHQHAMRRARGCGGRFLNTKKLNDNAAN-SAEKGMNSGADSSKGSTNGTGSVDSSIVQQ 276
           SRHQHAMRRARGCGGRFLNTKKL++N  N ++EKG         G  N +G +       
Sbjct: 209 SRHQHAMRRARGCGGRFLNTKKLDNNTTNPTSEKG--------SGDLNSSGDL------- 253

Query: 277 ERAMEENAHMEHTSSNSNSNNRSLLSMYNTSSGSVEGNFLGQQRGSMQGNGAPRGALPV 335
                E      +SSN + N  +L S Y++SS   +G+FLGQQ+ +  GN    GA+ +
Sbjct: 254 -----EEGKGSRSSSNGHGNGHALSSRYHSSSH--DGSFLGQQKETTHGNRVSNGAVSI 305

Source: Populus euphratica

Species: Populus euphratica

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449436305|ref|XP_004135933.1| PREDICTED: nuclear transcription factor Y subunit A-9-like [Cucumis sativus]

 Score =  281 bits (719), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 173/351 (49%), Positives = 211/351 (60%), Gaps = 48/351 (13%)

Query: 1   MMPAKPDE-NRQLDRGAQSVSQSAIYSQRPWWSGTGTGASLAEAAAPKSSREQPNGSVVN 59
           MMP++P+  ++Q+  GA+ + QS  +S+ PWW G G      E AA  SS E  N +V +
Sbjct: 1   MMPSEPENVDQQVADGAKYLLQSTKFSE-PWWHGVGNNTIAGEDAAKTSSAEYLNVTVAS 59

Query: 60  GATYSQ--DGINGQEHAHLKHIPSSTPLTMGERLEQNSQMELVGHSIVLTSYPYTDPQHV 117
           GAT  Q  D   G+E  HLK+IP ST   +GE L+ NSQMELVGHSIVLTSYP++D Q+ 
Sbjct: 60  GATQPQANDENIGKEVQHLKYIPFSTSPPVGEHLDLNSQMELVGHSIVLTSYPFSDAQYC 119

Query: 118 GVITPYVPQAMIPPQLYGMHQARMPLPLEMEEEPVYVNAKQYRGILRRRQSRAKAELEKK 177
            ++T Y PQA +P ++YG+H ARMPLPLEMEEEPVYVNAKQY GILRRRQSRAKAELEKK
Sbjct: 120 QMLTSYGPQATLP-RIYGLHHARMPLPLEMEEEPVYVNAKQYHGILRRRQSRAKAELEKK 178

Query: 178 VIKARKVTFHSLKGATIFYNKTLQGLDTYALFSLQPYLHESRHQHAMRRARGCGGRFLNT 237
           VIK+RK                             PYLHESRH HAMRRARG GGRFLNT
Sbjct: 179 VIKSRK-----------------------------PYLHESRHLHAMRRARGSGGRFLNT 209

Query: 238 KKLN------------DNAANSAEKGMNSGADSSKGSTNGTGSVDSSIVQQERAMEENAH 285
           KK N            D+ AN + K + S A S    TN  G  ++   Q    M +N  
Sbjct: 210 KKPNNVMSNTNREEDIDSVANHSTKPV-SEAVSKYMVTNEKGIKNTLDEQSREFMTQNMQ 268

Query: 286 MEHTSSNSNSNNRSLLSMYNTSSGSVEGNFLGQQRGSMQGNGAPRGALPVK 336
           + H   N  SN    LS Y++  G VEG  L Q   SMQ NGAP+ A+P+K
Sbjct: 269 ITHAFFNGKSNVHG-LSTYSSQLGDVEGGHLDQPHESMQVNGAPQRAIPIK 318

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449488843|ref|XP_004158189.1| PREDICTED: nuclear transcription factor Y subunit A-9-like [Cucumis sativus]

 Score =  278 bits (711), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 172/351 (49%), Positives = 210/351 (59%), Gaps = 48/351 (13%)

Query: 1   MMPAKPDE-NRQLDRGAQSVSQSAIYSQRPWWSGTGTGASLAEAAAPKSSREQPNGSVVN 59
           MMP++P+  ++Q+   A+ + QS  +S+ PWW G G      E AA  SS E  N +V +
Sbjct: 1   MMPSEPENVDQQVADRAKYLLQSTKFSE-PWWHGVGNNTIAGEDAAKTSSAEYLNVTVAS 59

Query: 60  GATYSQ--DGINGQEHAHLKHIPSSTPLTMGERLEQNSQMELVGHSIVLTSYPYTDPQHV 117
           GAT  Q  D   G+E  HLK+IP ST   +GE L+ NSQMELVGHSIVLTSYP++D Q+ 
Sbjct: 60  GATQPQANDENIGKEVQHLKYIPFSTSPPVGEHLDLNSQMELVGHSIVLTSYPFSDAQYC 119

Query: 118 GVITPYVPQAMIPPQLYGMHQARMPLPLEMEEEPVYVNAKQYRGILRRRQSRAKAELEKK 177
            ++T Y PQA +P ++YG+H ARMPLPLEMEEEPVYVNAKQY GILRRRQSRAKAELEKK
Sbjct: 120 QMLTSYGPQATLP-RIYGLHHARMPLPLEMEEEPVYVNAKQYHGILRRRQSRAKAELEKK 178

Query: 178 VIKARKVTFHSLKGATIFYNKTLQGLDTYALFSLQPYLHESRHQHAMRRARGCGGRFLNT 237
           VIK+RK                             PYLHESRH HAMRRARG GGRFLNT
Sbjct: 179 VIKSRK-----------------------------PYLHESRHLHAMRRARGSGGRFLNT 209

Query: 238 KKLN------------DNAANSAEKGMNSGADSSKGSTNGTGSVDSSIVQQERAMEENAH 285
           KK N            D+ AN + K + S A S    TN  G  ++   Q    M +N  
Sbjct: 210 KKPNNVMSNTNREEDIDSVANHSTKPV-SEAVSKYMVTNEKGIKNTLDEQSREFMTQNMQ 268

Query: 286 MEHTSSNSNSNNRSLLSMYNTSSGSVEGNFLGQQRGSMQGNGAPRGALPVK 336
           + H   N  SN    LS Y++  G VEG  L Q   SMQ NGAP+ A+P+K
Sbjct: 269 ITHAFFNGKSNVHG-LSTYSSQLGDVEGGHLDQPHESMQVNGAPQRAIPIK 318

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356544165|ref|XP_003540525.1| PREDICTED: nuclear transcription factor Y subunit A-9-like [Glycine max]

 Score =  265 bits (676), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 161/332 (48%), Positives = 205/332 (61%), Gaps = 49/332 (14%)

Query: 2   MPAKPD-ENRQLDRGAQSVSQSAIYSQ-RPWWSGTGTGASLAEAAAPKSSREQPNGSVVN 59
           MP KPD ++ +++RG Q   QS+IYS  +PWW G G      E A+  SS +Q NGS+VN
Sbjct: 1   MPGKPDTDDWRVERGEQIQFQSSIYSHHQPWWRGVG------ENASKSSSDDQLNGSIVN 54

Query: 60  GATYSQD-----GINGQEHAHLKHIPSSTPLTMGERLEQNSQMELVGHSIVLTSYPYTDP 114
           G T S+      G   +E+ ++KH   STP TM + L  N QMELVGHS+VLTS PY+D 
Sbjct: 55  GITRSETNDKSGGGVAKEYQNIKHAMLSTPFTMEKHLAPNPQMELVGHSVVLTS-PYSDA 113

Query: 115 QHVGVITPYVPQAMIPPQLYGMHQARMPLPLEMEEEPVYVNAKQYRGILRRRQSRAKAEL 174
           Q+  ++T Y  Q MI PQLYGMH ARMPLPLEMEEEPVYVNAKQY GILRRRQSRAKAE+
Sbjct: 114 QYGQILTTYGQQVMINPQLYGMHHARMPLPLEMEEEPVYVNAKQYHGILRRRQSRAKAEI 173

Query: 175 EKKVIKARKVTFHSLKGATIFYNKTLQGLDTYALFSLQPYLHESRHQHAMRRARGCGGRF 234
           EKKVIK RK                             PYLHESRH HAMRRARG GGRF
Sbjct: 174 EKKVIKNRK-----------------------------PYLHESRHLHAMRRARGNGGRF 204

Query: 235 LNTKKLNDNAANS-AEKGMNSGADSSKGSTNG----TGSVDSSIVQQERAMEENAHMEHT 289
           LNTKKL +N +NS ++KG N+ A++S  S N     T +++       +A  ++ H E +
Sbjct: 205 LNTKKLENNNSNSTSDKGNNTRANASTNSPNTQLLFTNNLNLGSSNVSQATVQHMHTEQS 264

Query: 290 SSNSNSNNRSLLSMYNT-SSGSVEGNFLGQQR 320
            +    N   L ++Y + ++G  EGN  G++R
Sbjct: 265 FTIGYHNGNGLTALYRSQANGKKEGNCFGKER 296

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388523193|gb|AFK49649.1| nuclear transcription factor Y subunit A7 [Medicago truncatula]

 Score =  223 bits (568), Expect = 9e-56,   Method: Compositional matrix adjust.
 Identities = 150/351 (42%), Positives = 194/351 (55%), Gaps = 67/351 (19%)

Query: 2   MPAKPD-ENRQLDRGAQSVSQSAIYSQ-RPWWSGTGTGASLAEAAAPKSSREQPNGSVVN 59
           MP KP+ ++ +++   Q    S+IYS  +PWW          E  +  SS +Q NGS++N
Sbjct: 1   MPGKPETDDWRIEHSEQVQLPSSIYSHHQPWW---------LENGSKPSSADQLNGSIMN 51

Query: 60  GATYSQ-------------DGINGQEHAHLKHIPSSTPLTMGERLEQNSQMELVGHSIVL 106
             T+S+              G   +EH ++KH  SST  +M + L  NSQ ELVGHSIVL
Sbjct: 52  DVTHSEPLVSPSLSLTDNSGGDVAKEHRNIKHTLSSTTASMDKHLYPNSQRELVGHSIVL 111

Query: 107 TSYPYTDPQHVGVITPYVPQAMIPPQLYGMHQARMPLPLEMEEEPVYVNAKQYRGILRRR 166
           TS PY++ Q   ++  Y  QAM+ PQLY MH ARM LPL+MEEEPVYVNAKQY GILRRR
Sbjct: 112 TS-PYSNAQFGQILNAYGQQAMMNPQLYQMHHARMLLPLKMEEEPVYVNAKQYHGILRRR 170

Query: 167 QSRAKAELEKKVIKARKVTFHSLKGATIFYNKTLQGLDTYALFSLQPYLHESRHQHAMRR 226
           QSRAKAELEKKVIK RK                             PYLHESRHQHA+RR
Sbjct: 171 QSRAKAELEKKVIKVRK-----------------------------PYLHESRHQHALRR 201

Query: 227 ARGCGGRFLNTKKLNDNAANSA-EKGMNSGADSSKGSTNGTGSVDSSIVQQERAMEENAH 285
           ARG GGRFLNTKK   N +N+A EKG N+G  S   + N   S  S  + + +      H
Sbjct: 202 ARGNGGRFLNTKKPEHNDSNAALEKGNNTGTTSGTNNENQGSSNVSQHMHKMQGFNIGYH 261

Query: 286 MEHTSSNSNSNNRSLLSMYNTSSGSVEGNFLGQQRGSMQGNGAPRGALPVK 336
                   + N  + L  ++ ++G  EG+F G++R S   NG   G   ++
Sbjct: 262 --------DGNGFTALC-HSQANGKQEGDFFGKKRES---NGEDEGLCLIQ 300

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|363814344|ref|NP_001242813.1| uncharacterized protein LOC100789738 [Glycine max] gi|255644824|gb|ACU22913.1| unknown [Glycine max]

 Score =  217 bits (553), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 155/333 (46%), Positives = 199/333 (59%), Gaps = 51/333 (15%)

Query: 2   MPAKPD-ENRQLDRGAQSVSQSAIYSQ-RPWWSGTGTGASLAEAAAPKSSREQPNGSVVN 59
           MP K D ++ +++RG Q   QS+IYS  +PW  G G      E A+  SS +Q NGS+VN
Sbjct: 1   MPGKADTDDWRVERGEQIQFQSSIYSHHQPWRGGVG------ENASKSSSADQLNGSIVN 54

Query: 60  GATYSQ------DGINGQEHAHLKHIPSSTPLTMGERLEQNSQMELVGHSIVLTSYPYTD 113
           G T S+      +G+  +E+ ++KH   STP TM + L  N QMELVGHS+VLTS PY++
Sbjct: 55  GITRSETNDKSGEGV-AKEYQNIKHAVLSTPFTMDKHLAPNPQMELVGHSVVLTS-PYSN 112

Query: 114 PQHVGVITPYVPQAMIPPQLYGMHQARMPLPLEMEEEPVYVNAKQYRGILRRRQSRAKAE 173
            QH  ++T Y  Q MI PQLYGM+ ARMPLP EMEEEPVYVNAKQY GILRRRQSRAKAE
Sbjct: 113 AQHGQILTTYGQQVMINPQLYGMYHARMPLPPEMEEEPVYVNAKQYHGILRRRQSRAKAE 172

Query: 174 LEKKVIKARKVTFHSLKGATIFYNKTLQGLDTYALFSLQPYLHESRHQHAMRRARGCGGR 233
           LEKKVIK RK                             PYLHESRH HAMRRARG GGR
Sbjct: 173 LEKKVIKNRK-----------------------------PYLHESRHLHAMRRARGNGGR 203

Query: 234 FLNTKKL-NDNAANSAEKGMNSGADSSKGSTNG----TGSVDSSIVQQERAMEENAHMEH 288
           FLN KKL N N+  +++ G N+GA+ S  S N     T + +       +A  ++ H   
Sbjct: 204 FLNKKKLENYNSDATSDIGQNTGANPSTNSPNTQHLFTNNENLGSSNASQATVQDMHRVE 263

Query: 289 TSSNSNSNNRSLLSMYNT-SSGSVEGNFLGQQR 320
           + +    N   L  +Y++ ++G  EGN  G++R
Sbjct: 264 SFNIGYHNGNGLAELYHSQANGKKEGNCFGKER 296

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	336
TAIR|locus:2182245	272	NF-YA1 ""nuclear factor Y, sub	0.264	0.327	0.494	9.9e-31
TAIR|locus:2088791	303	NF-YA9 ""nuclear factor Y, sub	0.535	0.594	0.323	2.3e-27
TAIR|locus:2028150	190	NF-YA7 ""nuclear factor Y, sub	0.255	0.452	0.425	2.6e-25
TAIR|locus:2061534	198	NF-YA4 ""nuclear factor Y, sub	0.342	0.580	0.379	1.4e-24
TAIR|locus:2032758	341	NF-YA3 ""nuclear factor Y, sub	0.235	0.231	0.426	9.4e-18
TAIR|locus:2014375	308	NF-YA5 ""nuclear factor Y, sub	0.187	0.204	0.476	2e-17
TAIR|locus:2007953	328	NF-YA8 ""nuclear factor Y, sub	0.223	0.228	0.433	5.4e-16
TAIR|locus:2088232	308	NF-YA6 ""nuclear factor Y, sub	0.083	0.090	0.785	6.5e-14
TAIR|locus:2144113	269	NF-YA10 ""nuclear factor Y, su	0.202	0.252	0.410	9e-14
ASPGD|ASPL0000068816	369	hapB [Emericella nidulans (tax	0.202	0.184	0.402	7.2e-13

TAIR|locus:2182245 NF-YA1 ""nuclear factor Y, subunit A1"" [Arabidopsis thaliana (taxid:3702)]

 Score = 190 (71.9 bits), Expect = 9.9e-31, Sum P(3) = 9.9e-31
 Identities = 45/91 (49%), Positives = 54/91 (59%)

Query:    98 ELVGHSIVLTSYPYTDPQHVGVITPYVPQAM-IPPQLYGMHQARXXXXXXXXXXXVYVNA 156
             ELVGH I     PY DP + G++  Y  Q +   P L GM + R           VYVNA
Sbjct:   120 ELVGHYIACVPNPYQDPYYGGLMGAYGHQQLGFRPYL-GMPRERTALPLDMAQEPVYVNA 178

Query:   157 KQYRGILRRRQSRAKAELEKKVIKARKVTFH 187
             KQY GILRRR++RAKAELE+KVI+ RK   H
Sbjct:   179 KQYEGILRRRKARAKAELERKVIRDRKPYLH 209

GO:0003677 "DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;IGI;ISS

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0009793 "embryo development ending in seed dormancy" evidence=NAS

GO:0016602 "CCAAT-binding factor complex" evidence=IEA;ISS

GO:0048510 "regulation of timing of transition from vegetative to reproductive phase" evidence=IMP

GO:0009790 "embryo development" evidence=IMP

GO:0010262 "somatic embryogenesis" evidence=IMP

GO:0048316 "seed development" evidence=IMP

GO:0055046 "microgametogenesis" evidence=IMP

TAIR|locus:2088791 NF-YA9 ""nuclear factor Y, subunit A9"" [Arabidopsis thaliana (taxid:3702)]

 Score = 199 (75.1 bits), Expect = 2.3e-27, Sum P(3) = 2.3e-27
 Identities = 66/204 (32%), Positives = 98/204 (48%)

Query:     2 MPAKPDEN-RQLDRGAQSVSQSAIYSQRPWW-SGTGTGASLAEAAAPKSSREQPNGSVVN 59
             M +K D    ++D        S+I S  PW  +     A+ +  A  KSS+        N
Sbjct:     6 MHSKSDSGGNKVDSEVHGTVSSSINSLNPWHRAAAACNANSSVEAGDKSSKSIALALESN 65

Query:    60 GATYSQDGINGQEHAHLKHIPSSTPLTMGERLEQNSQM------------ELVGHSIV-L 106
             G   S+   N     + +   +++P + G+  ++N +             +LVGH++   
Sbjct:    66 G---SKSPSNRDNTVNKESQVTTSPQSAGDYSDKNQESLHHGITQPPPHPQLVGHTVGWA 122

Query:   107 TSYPYTDPQHVGVITPYV--PQAMIPPQLYG-MHQARXXXXXXXXXXXVYVNAKQYRGIL 163
             +S PY DP + GV+  Y   P   +P   YG M  +R           V+VNAKQY+ IL
Sbjct:   123 SSNPYQDPYYAGVMGAYGHHPLGFVP---YGGMPHSRMPLPPEMAQEPVFVNAKQYQAIL 179

Query:   164 RRRQSRAKAELEKKVIKARKVTFH 187
             RRRQ+RAKAELEKK+IK+RK   H
Sbjct:   180 RRRQARAKAELEKKLIKSRKPYLH 203

GO:0003677 "DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0016602 "CCAAT-binding factor complex" evidence=IEA;ISS

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IDA

GO:0009555 "pollen development" evidence=IMP

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

GO:0009790 "embryo development" evidence=IMP

GO:0010262 "somatic embryogenesis" evidence=IMP

GO:0048316 "seed development" evidence=IMP

GO:0055046 "microgametogenesis" evidence=IMP

TAIR|locus:2028150 NF-YA7 ""nuclear factor Y, subunit A7"" [Arabidopsis thaliana (taxid:3702)]

 Score = 158 (60.7 bits), Expect = 2.6e-25, Sum P(2) = 2.6e-25
 Identities = 37/87 (42%), Positives = 47/87 (54%)

Query:   102 HSIVLTSYPYTDPQHVGVITPYV-PQAMIPPQLYGMHQARXXXXXXXXXXXVYVNAKQYR 160
             +S+    YPY DP +  +  P   P   +  QL G+ Q             V+VNAKQY 
Sbjct:    51 NSMAPGQYPYPDPYYRSIFAPPPQPYTGVHLQLMGVQQQGVPLPSDAVEEPVFVNAKQYH 110

Query:   161 GILRRRQSRAKAELEKKVIKARKVTFH 187
             GILRRRQSRA+ E + KVIK+RK   H
Sbjct:   111 GILRRRQSRARLESQNKVIKSRKPYLH 137

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0016602 "CCAAT-binding factor complex" evidence=ISS

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=RCA;IDA

GO:0016036 "cellular response to phosphate starvation" evidence=RCA

GO:0019375 "galactolipid biosynthetic process" evidence=RCA

TAIR|locus:2061534 NF-YA4 ""nuclear factor Y, subunit A4"" [Arabidopsis thaliana (taxid:3702)]

 Score = 159 (61.0 bits), Expect = 1.4e-24, Sum P(2) = 1.4e-24
 Identities = 49/129 (37%), Positives = 62/129 (48%)

Query:    69 NGQEHAHLKHIPSST-P-LTMG---ERLEQNS-QMELVGHSIVLTSYPYTDPQHVGVITP 122
             N + HA  +   S T P +  G   E ++ NS   E + H +    YPY DP +  V   
Sbjct:    11 NNESHAKKERPDSQTRPQVPSGRSSESIDTNSVYSEPMAHGL----YPYPDPYYRSVFAQ 66

Query:   123 --YVPQAM--IPPQLYGMHQARXXXXXXXXXXXVYVNAKQYRGILRRRQSRAKAELEKKV 178
               Y+P     +  QL GM Q             V+VNAKQY GILRRRQSRAK E   + 
Sbjct:    67 QAYLPHPYPGVQLQLMGMQQPGVPLQCDAVEEPVFVNAKQYHGILRRRQSRAKLEARNRA 126

Query:   179 IKARKVTFH 187
             IKA+K   H
Sbjct:   127 IKAKKPYMH 135

GO:0003677 "DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0016602 "CCAAT-binding factor complex" evidence=IEA;ISS

GO:0048510 "regulation of timing of transition from vegetative to reproductive phase" evidence=IMP

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IDA

GO:0009411 "response to UV" evidence=RCA

GO:0009651 "response to salt stress" evidence=RCA

GO:0009723 "response to ethylene stimulus" evidence=RCA

GO:0009733 "response to auxin stimulus" evidence=RCA

GO:0009737 "response to abscisic acid stimulus" evidence=RCA

GO:0009739 "response to gibberellin stimulus" evidence=RCA

GO:0009751 "response to salicylic acid stimulus" evidence=RCA

GO:0009753 "response to jasmonic acid stimulus" evidence=RCA

GO:0009813 "flavonoid biosynthetic process" evidence=RCA

GO:0010264 "myo-inositol hexakisphosphate biosynthetic process" evidence=RCA

GO:0046686 "response to cadmium ion" evidence=RCA

TAIR|locus:2032758 NF-YA3 ""nuclear factor Y, subunit A3"" [Arabidopsis thaliana (taxid:3702)]

 Score = 149 (57.5 bits), Expect = 9.4e-18, Sum P(2) = 9.4e-18
 Identities = 35/82 (42%), Positives = 47/82 (57%)

Query:   108 SYPYTDPQHVGVITP-YVPQA-MIPPQLYGMHQARXXXXXXXXXXX-VYVNAKQYRGILR 164
             S+ Y DP + G++   Y+PQA    PQ+  M   R            V+VNAKQY  I+R
Sbjct:   134 SFHYADPHYGGLLAATYLPQAPTCNPQMVSMIPGRVPLPAELTETDPVFVNAKQYHAIMR 193

Query:   165 RRQSRAKAELEKKVIKARKVTF 186
             RRQ RAK E + K+I+ARKV +
Sbjct:   194 RRQQRAKLEAQNKLIRARKVPY 215

GO:0003677 "DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;IGI;ISS

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0016602 "CCAAT-binding factor complex" evidence=IEA;ISS

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=RCA

TAIR|locus:2014375 NF-YA5 ""nuclear factor Y, subunit A5"" [Arabidopsis thaliana (taxid:3702)]

 Score = 156 (60.0 bits), Expect = 2.0e-17, Sum P(2) = 2.0e-17
 Identities = 30/63 (47%), Positives = 41/63 (65%)

Query:   212 QPYLHESRHQHAMRRARGCGGRFLNTKKLNDNAANSAEKGMNSGADSSKGSTNGTGSVDS 271
             +PYLHESRH HA++RARG GGRFLNTKKL +++ +     M +G + S     G   + S
Sbjct:   211 KPYLHESRHLHALKRARGSGGRFLNTKKLQESSNSLCSSQMANGQNFSMSPHGGGSGIGS 270

Query:   272 SIV 274
             S +
Sbjct:   271 SSI 273

GO:0003677 "DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0016602 "CCAAT-binding factor complex" evidence=IEA;ISS

GO:0009738 "abscisic acid mediated signaling pathway" evidence=IMP

GO:0009785 "blue light signaling pathway" evidence=IMP

GO:0009414 "response to water deprivation" evidence=IMP

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=RCA;IDA

GO:0016036 "cellular response to phosphate starvation" evidence=RCA

GO:0019375 "galactolipid biosynthetic process" evidence=RCA

GO:0009790 "embryo development" evidence=IMP

GO:0010262 "somatic embryogenesis" evidence=IMP

GO:0048316 "seed development" evidence=IMP

TAIR|locus:2007953 NF-YA8 ""nuclear factor Y, subunit A8"" [Arabidopsis thaliana (taxid:3702)]

 Score = 133 (51.9 bits), Expect = 5.4e-16, Sum P(2) = 5.4e-16
 Identities = 36/83 (43%), Positives = 46/83 (55%)

Query:   108 SYPYTDPQHVGVITP--YVPQAMI-PPQLYGMHQARXXXXXXXXXXXVYVNAKQYRGILR 164
             S+ Y DP H G + P  Y+PQA I  PQ+  +               V+VNAKQ+  I+R
Sbjct:   132 SFHYADP-HFGGLMPAAYLPQATIWNPQMTRVPLP----FDLIENEPVFVNAKQFHAIMR 186

Query:   165 RRQSRAKAELEKKVIKARKVTFH 187
             RRQ RAK E + K+IKARK   H
Sbjct:   187 RRQQRAKLEAQNKLIKARKPYLH 209

GO:0003677 "DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0016602 "CCAAT-binding factor complex" evidence=IEA;ISS

TAIR|locus:2088232 NF-YA6 ""nuclear factor Y, subunit A6"" [Arabidopsis thaliana (taxid:3702)]

 Score = 126 (49.4 bits), Expect = 6.5e-14, Sum P(2) = 6.5e-14
 Identities = 22/28 (78%), Positives = 25/28 (89%)

Query:   212 QPYLHESRHQHAMRRARGCGGRFLNTKK 239
             +PYLHESRH HA++R RG GGRFLNTKK
Sbjct:   204 KPYLHESRHLHALKRVRGSGGRFLNTKK 231

GO:0003677 "DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0016602 "CCAAT-binding factor complex" evidence=IEA;ISS

GO:0009790 "embryo development" evidence=IMP

GO:0010262 "somatic embryogenesis" evidence=IMP

GO:0048316 "seed development" evidence=IMP

TAIR|locus:2144113 NF-YA10 ""nuclear factor Y, subunit A10"" [Arabidopsis thaliana (taxid:3702)]

 Score = 130 (50.8 bits), Expect = 9.0e-14, Sum P(2) = 9.0e-14
 Identities = 30/73 (41%), Positives = 44/73 (60%)

Query:   212 QPYLHESRHQHAMRRARGCGGRFLNTKKLNDNAANSAEKGMNSGADSSKGSTNGTGSVDS 271
             +PY+H SRH HAMRR RG GGRFLNTK      A++A++   S + SS+       +++S
Sbjct:   164 KPYMHHSRHLHAMRRPRGSGGRFLNTK-----TADAAKQSKPSNSQSSEVFHPENETINS 218

Query:   272 SIVQQERAMEENA 284
             S    E  + ++A
Sbjct:   219 SREANESNLSDSA 231

GO:0003677 "DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0016602 "CCAAT-binding factor complex" evidence=IEA;ISS

GO:0009718 "anthocyanin-containing compound biosynthetic process" evidence=RCA

ASPGD|ASPL0000068816 hapB [Emericella nidulans (taxid:162425)]

 Score = 125 (49.1 bits), Expect = 7.2e-13, Sum P(2) = 7.2e-13
 Identities = 29/72 (40%), Positives = 39/72 (54%)

Query:   212 QPYLHESRHQHAMRRARGCGGRFLNTKKLNDNAANSAEKGMNSGADSSKGSTNGTGSVDS 271
             +PYLHESRH HAMRR RG GGRFL      D  A   +K    G +++  + +   S  S
Sbjct:   266 KPYLHESRHNHAMRRPRGPGGRFLTA----DEVAAMEKKNAAGGQENADPNASKAVSDSS 321

Query:   272 SIVQQERAMEEN 283
                Q+ +A + N
Sbjct:   322 PASQKRKASDGN 333

GO:0005634 "nucleus" evidence=IDA

GO:0003677 "DNA binding" evidence=IMP;IDA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IMP

GO:0016602 "CCAAT-binding factor complex" evidence=IDA

GO:0006351 "transcription, DNA-dependent" evidence=IMP

GO:0006109 "regulation of carbohydrate metabolic process" evidence=IMP

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IMP

GO:0043565 "sequence-specific DNA binding" evidence=IDA

GO:0016584 "nucleosome positioning" evidence=IMP

GO:0051170 "nuclear import" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: fgenesh4_pg.C_LG_IX000987 hypothetical protein (376 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	336
smart00521	62	smart00521, CBF, CCAAT-Binding transcription Facto	2e-28
pfam02045	57	pfam02045, CBFB_NFYA, CCAAT-binding transcription	4e-28
COG5224	248	COG5224, HAP2, CCAAT-binding factor, subunit B [Tr	3e-04

>gnl|CDD|128795 smart00521, CBF, CCAAT-Binding transcription Factor

 Score =  104 bits (261), Expect = 2e-28
 Identities = 48/91 (52%), Positives = 51/91 (56%), Gaps = 29/91 (31%)

Query: 147 MEEEPVYVNAKQYRGILRRRQSRAKAELEKKVIKARKVTFHSLKGATIFYNKTLQGLDTY 206
            EEEPVYVNAKQY  ILRRRQ+RAK E + K+ K RK                       
Sbjct: 1   AEEEPVYVNAKQYHRILRRRQARAKLEAQGKLPKERK----------------------- 37

Query: 207 ALFSLQPYLHESRHQHAMRRARGCGGRFLNT 237
                 PYLHESRH HAMRR RG GGRFLNT
Sbjct: 38  ------PYLHESRHLHAMRRPRGSGGRFLNT 62

Length = 62

>gnl|CDD|190198 pfam02045, CBFB_NFYA, CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B

 Score =  103 bits (259), Expect = 4e-28
 Identities = 44/86 (51%), Positives = 50/86 (58%), Gaps = 29/86 (33%)

Query: 149 EEPVYVNAKQYRGILRRRQSRAKAELEKKVIKARKVTFHSLKGATIFYNKTLQGLDTYAL 208
           +EP+YVNAKQY  ILRRRQ+RAK E E K+IK+RK                         
Sbjct: 1   DEPIYVNAKQYHRILRRRQARAKLEAENKLIKSRK------------------------- 35

Query: 209 FSLQPYLHESRHQHAMRRARGCGGRF 234
               PYLHESRH+HAMRR RG GGRF
Sbjct: 36  ----PYLHESRHKHAMRRPRGSGGRF 57

Length = 57

>gnl|CDD|227549 COG5224, HAP2, CCAAT-binding factor, subunit B [Transcription]

 Score = 41.3 bits (96), Expect = 3e-04
 Identities = 34/118 (28%), Positives = 40/118 (33%), Gaps = 34/118 (28%)

Query: 149 EEPVYVNAKQYRGILRRRQSRAKAELEKKVIKARKVTFHSLKGATIFYNKTLQGLDTYAL 208
            +P YVNAKQ   I +R   R    L+  V   R                          
Sbjct: 158 FQPDYVNAKQGNEISKRPGLRVY--LDDSVSAGRAF------------------------ 191

Query: 209 FSLQPYLHESRHQHAMRRARGCGGRFL---NTKKLNDNAANSAEKGMNSGADSSKGST 263
                YLHESRH+HAM R R   GRFL       LN          +      S GS+
Sbjct: 192 -----YLHESRHKHAMLRVRDPTGRFLTASEIDPLNLTGNTQDSMIIGQQTYPSHGSS 244

Length = 248

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	336
KOG1561	307	consensus CCAAT-binding factor, subunit B (HAP2) [	100.0
smart00521	62	CBF CCAAT-Binding transcription Factor.	100.0
PF02045	58	CBFB_NFYA: CCAAT-binding transcription factor (CBF	100.0
COG5224	248	HAP2 CCAAT-binding factor, subunit B [Transcriptio	99.8

>KOG1561 consensus CCAAT-binding factor, subunit B (HAP2) [Transcription]

Probab=100.00  E-value=4.5e-43  Score=330.09  Aligned_cols=119  Identities=55%  Similarity=0.773  Sum_probs=107.9

Q ss_pred             hhcccceeecc-CCCCCCccccccc---cCCCCcc--CCCcccCCCC-CCCCCCCCCCC-CceeechhhhHHHHHHHHHH
Q 019764           98 ELVGHSIVLTS-YPYTDPQHVGVIT---PYVPQAM--IPPQLYGMHQ-ARMPLPLEMEE-EPVYVNAKQYRGILRRRQSR  169 (336)
Q Consensus        98 el~ghs~~~~~-~py~dp~~~g~~~---~yg~q~m--~~pq~~g~~~-~R~pLP~~~~e-ePiYVNAKQY~rILrRR~aR  169 (336)
                      +.+.|...+++ +|+.+|+|.|++.   +|++|.+  +.+|+.||.. .|+|||.++.| ||||||||||+||||||++|
T Consensus       124 ~a~~~~~~~~s~~~~~~p~~~g~~~~~~~y~~~~~~~~~~q~~g~~~~~r~pLP~~~~e~ePl~VNaKQY~~IlrRRq~R  203 (307)
T KOG1561|consen  124 TASMSPANNTSGNPITSPHYRGVLDMSGAYSGQPTNTASTQYSGPVPHDRTPLPQTDSETEPLYVNAKQYHRILRRRQAR  203 (307)
T ss_pred             ccccccccccccCCCCCCcccceecccccccCCCCccccccccCCCCcCcccCCccccCCCceeEcHHHHHHHHHHHHHH
Confidence            45777777775 7999999999999   8998865  4678899988 99999999866 99999999999999999999


Q ss_pred             HHHHHhhhhhhhhhhhhcccccceeecccccccchhhhhcccCCchhhhhhHHhhhcccCCCCccccccccchhhh
Q 019764          170 AKAELEKKVIKARKVTFHSLKGATIFYNKTLQGLDTYALFSLQPYLHESRHQHAMRRARGCGGRFLNTKKLNDNAA  245 (336)
Q Consensus       170 AK~E~e~k~~k~RK~~~~~~~~~t~~~~~~~~gld~~~~~~kkpYLHESRHkHAmrR~RG~GGRFLt~ke~~~~~~  245 (336)
                      ||+|+++||||.||                             ||||||||+|||||+||+|||||++||..+...
T Consensus       204 aKlEa~~klik~Rk-----------------------------pYLHESRH~HAmkR~RG~GGRFln~k~~~~~ss  250 (307)
T KOG1561|consen  204 AKLEATTKLIKARK-----------------------------PYLHESRHLHAMKRARGEGGRFLNTKEYHDDSS  250 (307)
T ss_pred             hhhhhcccchhhcC-----------------------------ccccchhhHHHhhcccCCCCCCCchhhhhhhcc
Confidence            99999999999999                             999999999999999999999999999776554

>smart00521 CBF CCAAT-Binding transcription Factor

Probab=100.00  E-value=6.9e-37  Score=233.53  Aligned_cols=62  Identities=77%  Similarity=1.142  Sum_probs=60.1

Q ss_pred             CCCCceeechhhhHHHHHHHHHHHHHHHhhhhhhhhhhhhcccccceeecccccccchhhhhcccCCchhhhhhHHhhhc
Q 019764          147 MEEEPVYVNAKQYRGILRRRQSRAKAELEKKVIKARKVTFHSLKGATIFYNKTLQGLDTYALFSLQPYLHESRHQHAMRR  226 (336)
Q Consensus       147 ~~eePiYVNAKQY~rILrRR~aRAK~E~e~k~~k~RK~~~~~~~~~t~~~~~~~~gld~~~~~~kkpYLHESRHkHAmrR  226 (336)
                      ++++|||||||||++|||||++|||+|+++++++.||                             ||||||||+|||+|
T Consensus         1 ~~~~piyVNaKQy~~IlrRR~~Rak~e~~~kl~~~rk-----------------------------pYlhESRH~HAm~R   51 (62)
T smart00521        1 AEEEPVYVNAKQYHRILRRRQARAKLEAQGKLPKERK-----------------------------PYLHESRHLHAMRR   51 (62)
T ss_pred             CCCcceeEcHHHHHHHHHHHHHHHHHHHhcchhhccC-----------------------------CcccchhHHHHHcc
Confidence            4789999999999999999999999999999999998                             99999999999999


Q ss_pred             ccCCCCccccc
Q 019764          227 ARGCGGRFLNT  237 (336)
Q Consensus       227 ~RG~GGRFLt~  237 (336)
                      +||+||||||+
T Consensus        52 ~Rg~gGRFl~~   62 (62)
T smart00521       52 PRGSGGRFLNT   62 (62)
T ss_pred             CcCCCCCCCCC
Confidence            99999999986

>PF02045 CBFB_NFYA: CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B; InterPro: IPR001289 The CCAAT-binding factor (CBFB/NF-YA) is a mammalian transcription factor that binds to a CCAAT motif in the promoters of a wide variety of genes, including type I collagen and albumin []

Probab=100.00  E-value=4.5e-34  Score=215.76  Aligned_cols=57  Identities=77%  Similarity=1.171  Sum_probs=55.8

Q ss_pred             CCceeechhhhHHHHHHHHHHHHHHHhhhh-hhhhhhhhcccccceeecccccccchhhhhcccCCchhhhhhHHhhhcc
Q 019764          149 EEPVYVNAKQYRGILRRRQSRAKAELEKKV-IKARKVTFHSLKGATIFYNKTLQGLDTYALFSLQPYLHESRHQHAMRRA  227 (336)
Q Consensus       149 eePiYVNAKQY~rILrRR~aRAK~E~e~k~-~k~RK~~~~~~~~~t~~~~~~~~gld~~~~~~kkpYLHESRHkHAmrR~  227 (336)
                      |+|||||||||++|||||++|||+|+++++ ++.||                             ||||||||+|||+|+
T Consensus         1 ~~piyVNaKQY~rIlrRR~~Rakle~~~k~~~~~rk-----------------------------~YlheSRH~HA~~R~   51 (58)
T PF02045_consen    1 EEPIYVNAKQYHRILRRRQARAKLEAEGKLSPKKRK-----------------------------PYLHESRHKHAMRRP   51 (58)
T ss_pred             CCCeeECHHHHHHHHHHHHHHHHHHHhCCcchhhhH-----------------------------HHHHHHHHHHHHcCc
Confidence            689999999999999999999999999999 99998                             999999999999999


Q ss_pred             cCCCCcc
Q 019764          228 RGCGGRF  234 (336)
Q Consensus       228 RG~GGRF  234 (336)
                      ||+||||
T Consensus        52 Rg~gGRF   58 (58)
T PF02045_consen   52 RGPGGRF   58 (58)
T ss_pred             cCCCCCC
Confidence            9999999

The factor is a heteromeric complex of A and B subunits, both of which are required for DNA-binding []. The subunits can interact in the absence of DNA-binding, conserved regions in each being important in mediating this interaction. The B subunit contains a region of similarity with the yeast protein HAP2 []. For the B subunit it has been suggested that the N-terminal portion of the conserved region is involved in subunit interaction and the C-terminal region involved in DNA-binding [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>COG5224 HAP2 CCAAT-binding factor, subunit B [Transcription]

Probab=99.80  E-value=1.4e-20  Score=173.07  Aligned_cols=66  Identities=42%  Similarity=0.540  Sum_probs=58.9

Q ss_pred             CCCceeechhhhHHHHHHHHHHHHHHHhhhhhhhhhhhhcccccceeecccccccchhhhhcccCCchhhhhhHHhhhcc
Q 019764          148 EEEPVYVNAKQYRGILRRRQSRAKAELEKKVIKARKVTFHSLKGATIFYNKTLQGLDTYALFSLQPYLHESRHQHAMRRA  227 (336)
Q Consensus       148 ~eePiYVNAKQY~rILrRR~aRAK~E~e~k~~k~RK~~~~~~~~~t~~~~~~~~gld~~~~~~kkpYLHESRHkHAmrR~  227 (336)
                      ..+|+|||||||++|+|||-+|++++.  +|+-.|.                             .|||||||+|||+|+
T Consensus       157 sfqp~Yvnakq~n~i~kr~~~r~~ld~--~~~~~r~-----------------------------~ylHesrhkham~r~  205 (248)
T COG5224         157 SFQPDYVNAKQGNEISKRPGLRVYLDD--SVSAGRA-----------------------------FYLHESRHKHAMLRV  205 (248)
T ss_pred             ccCcchhhhhhhhHHhcchhHHHHHHH--Hhhhhhh-----------------------------hccccchhhhhhhcc
Confidence            478999999999999999999999886  4555666                             799999999999999


Q ss_pred             cCCCCccccccccchhh
Q 019764          228 RGCGGRFLNTKKLNDNA  244 (336)
Q Consensus       228 RG~GGRFLt~ke~~~~~  244 (336)
                      |+|+||||+++|++...
T Consensus       206 r~ptgrfLtasEi~~ln  222 (248)
T COG5224         206 RDPTGRFLTASEIDPLN  222 (248)
T ss_pred             cCCCcceecHHhhhhhh
Confidence            99999999999987654

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	336
4awl_A	78	The Nf-y Transcription Factor Is Structurally And F		4e-10
4g91_A	64	Ccaat-Binding Complex From Aspergillus Nidulans Len		4e-08

>pdb|4AWL|A Chain A, The Nf-y Transcription Factor Is Structurally And Functionally A Sequence Specific Histone Length = 78

Iteration: 1
 Score = 62.4 bits (150), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 38/87 (43%), Positives = 45/87 (51%), Gaps = 29/87 (33%)
Query: 152 VYVNAKQYRGILRRRQSRAKAELEKKVIKARKVTFHSLKGATIFYNKTLQGLDTYALFSL 211
           +YVNAKQY  IL+RRQ+RAK E E K+ K R+                            
Sbjct: 5   LYVNAKQYHRILKRRQARAKLEAEGKIPKERRK--------------------------- 37
Query: 212 QPYLHESRHQHAMRRARGCGGRFLNTK 238
             YLHESRH+HAM R RG GGRF + K
Sbjct: 38  --YLHESRHRHAMARKRGEGGRFFSPK 62

>pdb|4G91|A Chain A, Ccaat-Binding Complex From Aspergillus Nidulans Length = 64

Iteration: 1
 Score = 55.5 bits (132), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 36/85 (42%), Positives = 43/85 (50%), Gaps = 30/85 (35%)
Query: 152 VYVNAKQYRGILRRRQSRAKAELEKKVI-KARKVTFHSLKGATIFYNKTLQGLDTYALFS 210
           +YVNAKQ+  IL+RR +R K E + ++  K RK                           
Sbjct: 5   LYVNAKQFHRILKRRVARQKLEEQLRLTSKGRK--------------------------- 37
Query: 211 LQPYLHESRHQHAMRRARGCGGRFL 235
             PYLHESRH HAMRR RG GGRFL
Sbjct: 38  --PYLHESRHNHAMRRPRGPGGRFL 60
  Database: pdbaa

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	336
4g92_A	64	HAPB protein; transcription factor, nucleosome, mi	100.0

>4g92_A HAPB protein; transcription factor, nucleosome, minor groove binding, CCAA complex, histone fold motif, specific binding to the ccaat- nucleus; HET: DNA; 1.80A {Emericella nidulans} PDB: 4g91_A*

Probab=100.00  E-value=1.1e-36  Score=232.63  Aligned_cols=62  Identities=61%  Similarity=1.011  Sum_probs=57.7

Q ss_pred             CCceeechhhhHHHHHHHHHHHHHHHhhhhh-hhhhhhhcccccceeecccccccchhhhhcccCCchhhhhhHHhhhcc
Q 019764          149 EEPVYVNAKQYRGILRRRQSRAKAELEKKVI-KARKVTFHSLKGATIFYNKTLQGLDTYALFSLQPYLHESRHQHAMRRA  227 (336)
Q Consensus       149 eePiYVNAKQY~rILrRR~aRAK~E~e~k~~-k~RK~~~~~~~~~t~~~~~~~~gld~~~~~~kkpYLHESRHkHAmrR~  227 (336)
                      |+|||||||||++|||||++|||+|++++++ +.||                             ||||||||+|||+|+
T Consensus         2 eePiyVNaKQy~~IlrRR~~Rakle~~~kl~~~~rk-----------------------------~YlhESRH~HAm~R~   52 (64)
T 4g92_A            2 ESPLYVNAKQFHRILKRRVARQKLEEQLRLTSKGRK-----------------------------PYLHESRHNHAMRRP   52 (64)
T ss_dssp             -CCSCCCTTTHHHHHHHHHHHHHHHHHTTCCSSSCC-----------------------------SCSCHHHHHHHHHSC
T ss_pred             CCCeeECHHHHHHHHHHHHHHHHHHHhCCccccccc-----------------------------CcchhHHHHHHhcCC
Confidence            6999999999999999999999999999984 6777                             999999999999999


Q ss_pred             cCCCCccccccc
Q 019764          228 RGCGGRFLNTKK  239 (336)
Q Consensus       228 RG~GGRFLt~ke  239 (336)
                      ||+||||||++|
T Consensus        53 Rg~gGRFl~~~e   64 (64)
T 4g92_A           53 RGPGGRFLTADE   64 (64)
T ss_dssp             BCTTSCBCCCC-
T ss_pred             cCCCCccccCCC
Confidence            999999999986

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00