Citrus Sinensis ID: 019775

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330------
Protein Sequence
MGSLPLTLDLLPHKVSENTLLDLFKSQQDHLNYFFQHLSLPHTLTFTQTLLKCRGTIFFTGVGKSGFVANKISQTLISLGIKSGFLNPLDALHGDIGILSSDDILVMFSKSGNTEELLKVVPCAKAKGAYLVSVTSVEGNALAAVCDMNVHLPVERELCPFDLAPVTSTAIQMVFGDTVAIAMMGARNLTRDEYAANHPAGRIGKSLIFKVQDVMKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRRTLKASGEGIFKLTVGEMCNRSPRTIGPDAMAVEAMQKMESPPSPVQFLPVINRQNILIGIVTLHGLVSAGL
Secondary Structure (PSIPRED)
ccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHccccEEEEEcccHHHHHHHHHHHHHcccccccccccccccccccccccccccEEEEEEccccHHHHHHHHHHHHHHccEEEEEEcccccHHHHHccEEEEccccccccccccccHHHHHHHHHHHHHHHHHHHHcccccHHHHHHcccccHHHHHHHHcHHHHHccccccccccccccHHHHHHHHHccccEEEEEEcccccEEEEEEcHHHHHHHHHcccccccccHHHHccccccEEccccHHHHHHHHHccccccccEEEEEcccccEEEEEEHHHHHHccc
Secondary Structure Prediction (SSPRO)
cccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHcccEEEEEccccccHHHHHHHHHHHccccccEEEcccccccccccccccccEEEEEEccccHHHHHHHHHHHHHccccEEEEccccccHHHHHccEEEEEcccccccccccccccHHHHHHHHHHHHHHHHHHHccccHHHHHHcccccHHHHHHEEEHHHHHccccccccccccccHHHHHHHHHHccccEEEEEcccccEEEEEEccHHHHHHHHcccccccccHHHHccccccEccHHHHHHHHHHHHHHccccEEEEEEEcccccEEEEEEHHHHHHccc
Coil and Loop (DISEMBL)
mgslpltldllphkvsenTLLDLFKSQQDHLNYFFQhlslphtlTFTQTLLKCrgtifftgvgksgfVANKISQTLISLGiksgflnpldalhgdigilsSDDILVMFSksgnteelLKVVpcakakgaYLVSVTSVEGNALAAVCDmnvhlpverelcpfdlapvtstAIQMVFGDTVAIAMMGArnltrdeyaanhpagrigkSLIFKVQdvmkpqkelpvckegDLIMDQLVELTSKGCGCLLVIDEeyhligtftdgDLRRTLKASGEGIFKLTVgemcnrsprtigpdAMAVEAMQkmesppspvqflpvinrqnILIGIVTLhglvsagl
Flexible Loop (DISEMBL)
mgslpltldllpHKVSENTLLDLFKSQQDHLNYFFQHLSLPHTLTFTQTLLKCRGTIFFTGVGKSGFVANKISQTLISLGIKSGFLNPLDALHGDIGILSSDDILVMFSKSGNTEELLKVVPCAKAKGAYLVSVTSVEGNALAAVCDMNVHLPVERELCPFDLAPVTSTAIQMVFGDTVAIAMMGARNLTRDEYAANHPAGRIGKSLIFKVQDVMKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRRTLKASGEGIfkltvgemcnrspRTIGPDAMAVEAMQKMESPPSPVQFLPVINRQNILIGIVTLhglvsagl
Low Complexity Region (SEG)
MGSLPLTLDLLPHKVSENTLLDLFKSQQDHLNYFFQHLSLPHTLTFTQTLLKCRGTIFFTGVGKSGFVANKISQTLISLGIKSGFLNPLDALHGDIGILSSDDILVMFSKSGNTEELLKVVPCAKAKGAYLVSVTSVEGNALAAVCDMNVHLPVERELCPFDLAPVTSTAIQMVFGDTVAIAMMGARNLTRDEYAANHPAGRIGKSLIFKVQDVMKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRRTLKASGEGIFKLTVGEMCNRSPRTIGPDAMAVEAMQKMESPPSPVQFLPVINRQNILIGIVTLHGLVSAGL
Disordered region (IsUnstruct)
*******LDLLPHKVSENTLLDLFKSQQDHLNYFFQHLSLPHTLTFTQTLLKCRGTIFFTGVGKSGFVANKISQTLISLGIKSGFLNPLDALHGDIGILSSDDILVMFSKSGNTEELLKVVPCAKAKGAYLVSVTSVEGNALAAVCDMNVHLPVERELCPFDLAPVTSTAIQMVFGDTVAIAMMGARNLTRDEYAANHPAGRIGKSLIFKVQDVMKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRRTLKASGEGIFKLTVGEMCN*************************VQFLPVINRQNILIGIVTLHGLV****
Disordered Region (DISOPRED)
*****************NTLLDLFKSQQDHLNYFFQHLSLPHTLTFTQTLLKCRGTIFFTGVGKSGFVANKISQTLISLGIKSGFLNPLDALHGDIGILSSDDILVMFSKSGNTEELLKVVPCAKAKGAYLVSVTSVEGNALAAVCDMNVHLPVERELCPFDLAPVTSTAIQMVFGDTVAIAMMGARNLTRDEYAANHPAGRIGKSLIFKVQDVMKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRRTLKASGEGIFKLTVGEMCNRSPRTIGPDAMAVEAMQKMESPPSPVQFLPVINRQNILIGIVTLHGLVSAGL
Disordered Region (DISEMBL)
MGSLPLTLDLLPHKVSENTLLDLFKSQQDHLNYFFQHLSLPHTLTFTQTLLKCRGTIFFTGVGKSGFVANKISQTLISLGIKSGFLNPLDALHGDIGILSSDDILVMFSKSGNTEELLKVVPCAKAKGAYLVSVTSVEGNALAAVCDMNVHLPVERELCPFDLAPVTSTAIQMVFGDTVAIAMMGARNLTRDEYAANHPAGRIGKSLIFKVQDVMKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRRTLKASGEGIFKLTVGEMCNRSPRTIGPDAMAVEAMQKMESPPSPVQFLPVINRQNILIGIVTLHGLVSAGL
Disordered Region (DISPRO)
****PLTLDLLPHKVSENTLLDLFKSQQDHLNYFFQHLSLPHTLTFTQTLLKCRGTIFFTGVGKSGFVANKISQTLISLGIKSGFLNPLDALHGDIGILSSDDILVMFSKSGNTEELLKVVPCAKAKGAYLVSVTSVEGNALAAVCDMNVHLPVERELCPFDLAPVTSTAIQMVFGDTVAIAMMGARNLTRDEYAANHPAGRIGKSLIFKVQDVMKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRRTLKASGEGIFKLTVGEMCNRSPRTIGPDAMAVEAMQKMESPPSPVQFLPVINRQNILIGIVTLHGLVSAG*
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGSLPLTLDLLPHKVSENTLLDLFKSQQDHLNYFFQHLSLPHTLTFTQTLLKCRGTIFFTGVGKSGFVANKISQTLISLGIKSGFLNPLDALHGDIGILSSDDILVMFSKSGNTEELLKVVPCAKAKGAYLVSVTSVEGNALAAVCDMNVHLPVERELCPFDLAPVTSTAIQMVFGDTVAIAMMGARNLTRDEYAANHPAGRIGKSLIFKVQDVMKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRRTLKASGEGIFKLTVGEMCNRSPRTIGPDAMAVEAMQKMESPPSPVQFLPVINRQNILIGIVTLHGLVSAGL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	336	2.2.26 [Sep-21-2011]
Q9M1T1	350	Probable arabinose 5-phos	yes	no	0.964	0.925	0.783	1e-147
Q9Z826	329	Uncharacterized protein C	yes	no	0.955	0.975	0.404	6e-65
Q9PJZ7	328	Uncharacterized protein T	yes	no	0.952	0.975	0.379	7e-61
O84404	328	Uncharacterized protein C	yes	no	0.952	0.975	0.373	2e-60
O67500	322	Uncharacterized phosphosu	yes	no	0.845	0.881	0.389	2e-56
Q9HVW0	326	Arabinose 5-phosphate iso	yes	no	0.851	0.877	0.366	7e-50
Q5NGP7	327	Arabinose 5-phosphate iso	yes	no	0.824	0.847	0.345	6e-49
Q8FDQ2	327	Arabinose 5-phosphate iso	yes	no	0.812	0.834	0.375	2e-47
Q47334	327	Arabinose 5-phosphate iso	yes	no	0.812	0.834	0.367	1e-46
P42502	317	Arabinose 5-phosphate iso	yes	no	0.747	0.791	0.375	6e-45

>sp|Q9M1T1|SETH3_ARATH Probable arabinose 5-phosphate isomerase OS=Arabidopsis thaliana GN=SETH3 PE=2 SV=1

 Score =  522 bits (1344), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 254/324 (78%), Positives = 289/324 (89%)

Query: 13  HKVSENTLLDLFKSQQDHLNYFFQHLSLPHTLTFTQTLLKCRGTIFFTGVGKSGFVANKI 72
            ++S + LL+LFKSQQD LN+FF+HL L  TL F++ LL   GT+FFTGVGKS FVANK+
Sbjct: 27  QEISHDNLLNLFKSQQDLLNHFFKHLDLSQTLDFSRILLSTTGTVFFTGVGKSAFVANKV 86

Query: 73  SQTLISLGIKSGFLNPLDALHGDIGILSSDDILVMFSKSGNTEELLKVVPCAKAKGAYLV 132
           SQTL+SL  +S FL+PLDALHGDIG LS  D+LV FSKSG TEELL++VPCA+AKGA+LV
Sbjct: 87  SQTLVSLSFRSSFLSPLDALHGDIGALSPRDVLVFFSKSGATEELLRLVPCARAKGAFLV 146

Query: 133 SVTSVEGNALAAVCDMNVHLPVERELCPFDLAPVTSTAIQMVFGDTVAIAMMGARNLTRD 192
           S+TSV GN LA VCDMNVHLP++RELCPF+LAPVTSTAIQMVFGDT+A+A+M ARNL+++
Sbjct: 147 SLTSVSGNPLAGVCDMNVHLPLQRELCPFNLAPVTSTAIQMVFGDTIAVALMAARNLSKE 206

Query: 193 EYAANHPAGRIGKSLIFKVQDVMKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEEY 252
           EYAANHPAGRIGKSLIFKV+DVMK Q+ELPVCKEGDLIMDQLVELTSKGCGCLLV+DE  
Sbjct: 207 EYAANHPAGRIGKSLIFKVKDVMKKQEELPVCKEGDLIMDQLVELTSKGCGCLLVVDEHS 266

Query: 253 HLIGTFTDGDLRRTLKASGEGIFKLTVGEMCNRSPRTIGPDAMAVEAMQKMESPPSPVQF 312
            LIGTFTDGDLRRTLKASGE IFKL+VGEMCNR PRTIGP+ MAVEAM+KMESPPSPVQF
Sbjct: 267 RLIGTFTDGDLRRTLKASGEAIFKLSVGEMCNRKPRTIGPETMAVEAMKKMESPPSPVQF 326

Query: 313 LPVINRQNILIGIVTLHGLVSAGL 336
           LPV+N  N LIGIVTLHGLVSAGL
Sbjct: 327 LPVVNEDNTLIGIVTLHGLVSAGL 350

Catalyzes the reversible aldol-ketol isomerization between D-ribulose 5-phosphate (Ru5P) and D-arabinose 5-phosphate (A5P).
Arabidopsis thaliana (taxid: 3702)
EC: 5EC: .EC: 3EC: .EC: 1EC: .EC: 1EC: 3

>sp|Q9Z826|Y526_CHLPN Uncharacterized protein CPn_0526/CP_0226/CPj0526/CpB0547 OS=Chlamydia pneumoniae GN=CPn_0526 PE=3 SV=1

 Score =  248 bits (632), Expect = 6e-65,   Method: Compositional matrix adjust.
 Identities = 131/324 (40%), Positives = 202/324 (62%), Gaps = 3/324 (0%)

Query: 15  VSENTLLDLFKSQQDHLNYFFQHLSLPHTLTFTQTLLKCRGTIFFTGVGKSGFVANKISQ 74
           +S +   D+   Q++ +++FFQ       +   + +L   G +FF+GVGKSG VA K+  
Sbjct: 6   ISTDVCQDILGKQKEAVDFFFQAFQPKEAMQLAEKILGHSGWVFFSGVGKSGCVARKLVA 65

Query: 75  TLISLGIKSGFLNPLDALHGDIGILSSDDILVMFSKSGNTEELLKVVPCAKAKGAYLVSV 134
           TL SL  ++ F +P+D LHGD+G++S  DI+ +FSKSG T+ELL  VP  K++ A LV++
Sbjct: 66  TLQSLSERALFFSPVDLLHGDLGLVSPGDIVCLFSKSGETQELLDTVPHLKSRRAILVAI 125

Query: 135 TSVEGNALAAVCDMNVHLPVERELCPFDLAPVTSTAIQMVFGDTVAIAMMGARNLTRDEY 194
           TS+  + LAA+ D+ V LP   EL PF+L P  ST  QM+FGD +A+ +  +R ++   Y
Sbjct: 126 TSMPYSNLAALSDLVVILPSVAELDPFNLIPTNSTTCQMIFGDFLAMLLFHSRGVSLSTY 185

Query: 195 AANHPAGRIGKSLIFKVQDVMKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHL 254
             NHP+G++G     KV+D M P+ E+P C  GD +   L   ++ GCGC+ ++D ++ L
Sbjct: 186 GKNHPSGQVGMKANGKVKDFMFPKTEVPFCHLGDKVSFSLEVFSAYGCGCVCIVDPQFRL 245

Query: 255 IGTFTDGDLRRTLKASGEGIFKLTVGEMCNRSPRTIGPDAMAVEAMQKMESPPSPVQFLP 314
           +G FTDGDLRR+L + G  +  L++ ++   +PR I  D+    A+Q MES  SPV  LP
Sbjct: 246 MGIFTDGDLRRSLASYGGEVLSLSLEKVMTANPRCITEDSDIAIALQLMES-SSPVAVLP 304

Query: 315 VI-NRQNI-LIGIVTLHGLVSAGL 336
           V+ N +N  + G++ +H L  AGL
Sbjct: 305 VLDNEENRHVTGLLHMHTLAKAGL 328

Chlamydia pneumoniae (taxid: 83558)

>sp|Q9PJZ7|Y679_CHLMU Uncharacterized protein TC_0679 OS=Chlamydia muridarum (strain MoPn / Nigg) GN=TC_0679 PE=3 SV=1

 Score =  234 bits (597), Expect = 7e-61,   Method: Compositional matrix adjust.
 Identities = 123/324 (37%), Positives = 196/324 (60%), Gaps = 4/324 (1%)

Query: 15  VSENTLLDLFKSQQDHLNYFFQHLSLPHTLTFTQTLLKCRGTIFFTGVGKSGFVANKISQ 74
           V+E+  LD+F  Q+  ++ +F +         T+ LL  +G +FF+G+GKSG +A K+  
Sbjct: 6   VAEDLCLDIFHKQKQVISRYFANFHCDVVRQLTERLLCHQGAVFFSGIGKSGCIARKLVA 65

Query: 75  TLISLGIKSGFLNPLDALHGDIGILSSDDILVMFSKSGNTEELLKVVPCAKAKGAYLVSV 134
           T+ S G K+ FL+  D LHGD+G++SS DI+ +FS SG T E+L+ +P  K +  +LV +
Sbjct: 66  TMQSFGEKAFFLSG-DLLHGDLGVVSSGDIVCLFSNSGETREILEWIPHLKNRQVFLVGI 124

Query: 135 TSVEGNALAAVCDMNVHLPVERELCPFDLAPVTSTAIQMVFGDTVAIAMMGARNLTRDEY 194
           TS   ++LA   D  V LP   EL PF+L P TST  Q++F D +A+ ++  R ++  +Y
Sbjct: 125 TSSPCSSLAVFSDFVVMLPKLEELDPFNLIPTTSTTCQLLFSDLLAMTVLRCRKISLSDY 184

Query: 195 AANHPAGRIGKSLIFKVQDVMKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHL 254
             NHP+G+IG     KV+D + P+ E+P C     + + L  L+S G GC+ V++E++ L
Sbjct: 185 GKNHPSGQIGLKANGKVRDYLSPRTEVPFCSPSITVSEALTVLSSYGYGCVCVVNEQFEL 244

Query: 255 IGTFTDGDLRRTLKASGEGIFKLTVGEMCNRSPRTIGPDAMAVEAMQKMESPPSPVQFLP 314
           +G FTDGDLRR L   G  I +  + ++  R P+ I  D+  +  ++ MES  +PV  LP
Sbjct: 245 LGIFTDGDLRRGLSECGGAILECPLEQVMTRKPKVISEDSDVLLGLEMMES-GNPVTVLP 303

Query: 315 VIN--RQNILIGIVTLHGLVSAGL 336
           V++   Q  ++G++ +H L  AGL
Sbjct: 304 VVDAQHQRFIVGLLHMHTLARAGL 327

Chlamydia muridarum (strain MoPn / Nigg) (taxid: 243161)

>sp|O84404|Y399_CHLTR Uncharacterized protein CT_399 OS=Chlamydia trachomatis (strain D/UW-3/Cx) GN=CT_399 PE=3 SV=1

 Score =  233 bits (593), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 121/324 (37%), Positives = 198/324 (61%), Gaps = 4/324 (1%)

Query: 15  VSENTLLDLFKSQQDHLNYFFQHLSLPHTLTFTQTLLKCRGTIFFTGVGKSGFVANKISQ 74
           ++EN  LD+F  Q+  ++ +F           T+ LL  +G++FF+G+GKSG +A K+  
Sbjct: 6   IAENLCLDIFHKQKQVISQYFASFHYDCVHQLTEKLLCHQGSLFFSGIGKSGCIARKLVA 65

Query: 75  TLISLGIKSGFLNPLDALHGDIGILSSDDILVMFSKSGNTEELLKVVPCAKAKGAYLVSV 134
           T+ S G K+ FL+  D LHGD+G++S  DI+ +FS SG T E+L+ +P  K +  +LV +
Sbjct: 66  TMQSFGEKAFFLSG-DLLHGDLGVVSPGDIVCLFSNSGETREILEWIPHLKNRPVFLVGI 124

Query: 135 TSVEGNALAAVCDMNVHLPVERELCPFDLAPVTSTAIQMVFGDTVAIAMMGARNLTRDEY 194
           T+   ++LAA  D  + LP   EL PF+L P TST  Q++F D +A+ ++  R ++  +Y
Sbjct: 125 TAAPCSSLAAFSDFVIVLPKLEELDPFNLMPTTSTTCQLLFSDLLAMTLLRCRKISLSDY 184

Query: 195 AANHPAGRIGKSLIFKVQDVMKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHL 254
            +NHP+G+IG     KV+D + P+ E+P C     + + L  L+S G GC+ V++E + L
Sbjct: 185 GSNHPSGQIGLKANGKVKDYLYPRTEVPFCSPLTTVAESLPTLSSYGYGCVCVVNELFEL 244

Query: 255 IGTFTDGDLRRTLKASGEGIFKLTVGEMCNRSPRTIGPDAMAVEAMQKMESPPSPVQFLP 314
           +G FTDGDLRR L   G  I    + ++  R+P+ I  D+  + +++ MES  +PV  LP
Sbjct: 245 LGIFTDGDLRRGLSEYGGDILAYPLQQIMTRNPKVISEDSDVLLSLEMMES-GNPVTVLP 303

Query: 315 VIN--RQNILIGIVTLHGLVSAGL 336
           V++  +Q  ++G++ +H L  AGL
Sbjct: 304 VVDAQQQRFIVGLLHMHALARAGL 327

Chlamydia trachomatis (strain D/UW-3/Cx) (taxid: 272561)

>sp|O67500|Y1546_AQUAE Uncharacterized phosphosugar isomerase aq_1546 OS=Aquifex aeolicus (strain VF5) GN=aq_1546 PE=3 SV=1

 Score =  219 bits (559), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 113/290 (38%), Positives = 182/290 (62%), Gaps = 6/290 (2%)

Query: 48  QTLLKCRGTIFFTGVGKSGFVANKISQTLISLGIKSGFLNPLDALHGDIGILSSDDILVM 107
           + L  C G +  TG+GKSG +A KIS TL S G  S FL+P +ALHGD+G+L S D L+ 
Sbjct: 37  EILRNCEGKVILTGIGKSGHIARKISSTLSSTGTPSVFLHPAEALHGDMGLLDSKDALIA 96

Query: 108 FSKSGNTEELLKVVPCAKAKGAYLVSVTSVEGNALAAVCDMNVHLPVERELCPFDLAPVT 167
            S SG + E+L V+  AKA    ++ +T  E ++LA   D+ + +PV+RE CPF+LAP  
Sbjct: 97  ISNSGESTEVLYVLQYAKALNIPVIGITGNEKSSLAKYSDVVLKIPVDREACPFNLAPTV 156

Query: 168 STAIQMVFGDTVAIAMMGARNLTRDEYAANHPAGRIGKSLIFKVQDVMKPQKELPVCKEG 227
           S+ + +  GD +A+ +M  +  +++++A  HPAG +G+ L   V+D+    +E+P+ KE 
Sbjct: 157 SSTVTLALGDAIAMTLMKLKGFSQEDFAKRHPAGALGRKLRL-VKDLYHTGEEVPIVKED 215

Query: 228 DLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRRTLKASGEGIFKLT-VGEMCNRS 286
             + + ++E+T+KG G   V++EE  L+G  TDGDLRR +   G   F+ T   ++  ++
Sbjct: 216 TSMKEAIIEMTAKGFGATAVVNEEGKLVGIITDGDLRRFVNRGGS--FENTRAKDVMTKN 273

Query: 287 PRTIGPDAMAVEAMQKMESPPSPVQFLPVINRQNILIGIVTLHGLVSAGL 336
           P+TI PD +A++A++KME     +  L V+N +N  IGI+ +H ++ A L
Sbjct: 274 PKTIKPDELALKALRKMED--HNITVLIVVNEENEPIGILHMHDILKAEL 321

Aquifex aeolicus (strain VF5) (taxid: 224324)

>sp|Q9HVW0|KDSD_PSEAE Arabinose 5-phosphate isomerase KdsD OS=Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228) GN=kdsD PE=1 SV=1

 Score =  197 bits (502), Expect = 7e-50,   Method: Compositional matrix adjust.
 Identities = 106/289 (36%), Positives = 176/289 (60%), Gaps = 3/289 (1%)

Query: 48  QTLLKCRGTIFFTGVGKSGFVANKISQTLISLGIKSGFLNPLDALHGDIGILSSDDILVM 107
           + LL  +G +   G+GKSG V  KI+ TL S G  S F++P +A HGD+G+++ DD+++ 
Sbjct: 40  ELLLAGKGRVVVVGMGKSGHVGKKIAATLASTGTPSFFVHPAEASHGDMGMITKDDVVLA 99

Query: 108 FSKSGNTEELLKVVPCAKAKGAYLVSVTSVEGNALAAVCDMNVHLPVERELCPFDLAPVT 167
            S SG+T E++ ++P  K  G  L+S+T    + LA   ++N+   V +E CP +LAP +
Sbjct: 100 LSNSGSTAEIVTLLPLIKRLGITLISMTGNPESPLAKAAEVNLDASVGQEACPLNLAPTS 159

Query: 168 STAIQMVFGDTVAIAMMGARNLTRDEYAANHPAGRIGKSLIFKVQDVMKPQKELPVCKEG 227
           ST + +V GD +AIA++ AR  T +++A +HP G +G+ L+ KV+DVM   + LP    G
Sbjct: 160 STTVTLVLGDALAIALLEARGFTAEDFAFSHPGGALGRRLLLKVEDVMHVGEGLPQVLLG 219

Query: 228 DLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRRTLKASGEGIFKLTVGEMCNRSP 287
             +   L+E+T KG G  +V+DE   L G FTDGDLRR L   G  + ++T+ ++     
Sbjct: 220 TSLTGALMEMTRKGLGMTVVLDEHGKLAGIFTDGDLRRALD-RGIDVRQVTIDQVMTVHG 278

Query: 288 RTIGPDAMAVEAMQKMESPPSPVQFLPVINRQNILIGIVTLHGLVSAGL 336
           +T+  + +A EA++ ME   + +  L V++  +  +G + +H L+ AG+
Sbjct: 279 KTVRAEILAAEALKIMED--NKIGALVVVDADDRPVGALNMHDLLRAGV 325

Involved in the biosynthesis of 3-deoxy-D-manno-octulosonate (KDO), a unique 8-carbon sugar component of lipopolysaccharides (LPSs). Catalyzes the reversible aldol-ketol isomerization between D-ribulose 5-phosphate (Ru5P) and D-arabinose 5-phosphate (A5P).

Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228) (taxid: 208964)

EC: 5

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 1

EC: 3

>sp|Q5NGP7|KDSD_FRATT Arabinose 5-phosphate isomerase KdsD OS=Francisella tularensis subsp. tularensis (strain SCHU S4 / Schu 4) GN=kdsD PE=1 SV=1

 Score =  194 bits (494), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 97/281 (34%), Positives = 174/281 (61%), Gaps = 4/281 (1%)

Query: 52  KCRGTIFFTGVGKSGFVANKISQTLISLGIKSGFLNPLDALHGDIGILSSDDILVMFSKS 111
           + +  +  TG+GKSG +  K++ T  S G  + F++P +A HGD G+++ +D+L+  S S
Sbjct: 46  RDKSRVIITGMGKSGHIGKKMAATFASTGTPAFFVHPGEAGHGDFGMITKNDVLIAISNS 105

Query: 112 GNTEELLKVVPCAKAKGAYLVSVTSVEGNALAAVCDMNVHLPVERELCPFDLAPVTSTAI 171
           G + E++ ++P  K     ++++TS   + LA   ++ ++L V++E CP +LAP +ST  
Sbjct: 106 GTSSEIMGLLPMIKHLDIPIIAITSNPKSILARNSNVTLNLHVDKEACPLNLAPTSSTTA 165

Query: 172 QMVFGDTVAIAMMGARNLTRDEYAANHPAGRIGKSLIFKVQDVMKPQKELPVCKEGDLIM 231
            +V GD +AIA++ A+N +  ++A +HP G +G+ LI KV+++M+   E+P+ K  D I 
Sbjct: 166 TLVLGDALAIALLKAKNFSEKDFAFSHPNGALGRKLILKVENIMRKGNEIPIVKPTDNIR 225

Query: 232 DQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRRTLKASGEGIFKLTVGEMCNRSPRTIG 291
             ++E++ KG G  LV  E   L+G FTDGDLRR  +A      +  + E+  ++P++I 
Sbjct: 226 KAILEISDKGVGNTLVA-ENNTLLGIFTDGDLRRMFEAESFN-SQRAISEVMTKNPKSIS 283

Query: 292 PDAMAVEAMQKMESPPSPVQFLPVINRQNILIGIVTLHGLV 332
            + MA+ A++KME     +  L V++  + ++GIVT+H L+
Sbjct: 284 KEEMAITALEKMEK--YEITSLAVVDNGHNILGIVTMHDLI 322

Involved in the biosynthesis of 3-deoxy-D-manno-octulosonate (KDO), a unique 8-carbon sugar component of lipopolysaccharides (LPSs). Catalyzes the reversible aldol-ketol isomerization between D-ribulose 5-phosphate (Ru5P) and D-arabinose 5-phosphate (A5P).

Francisella tularensis subsp. tularensis (strain SCHU S4 / Schu 4) (taxid: 177416)

EC: 5

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 1

EC: 3

>sp|Q8FDQ2|KPSF_ECOL6 Arabinose 5-phosphate isomerase KpsF OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=kpsF PE=1 SV=2

 Score =  190 bits (482), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 105/280 (37%), Positives = 164/280 (58%), Gaps = 7/280 (2%)

Query: 50  LLKCRGTIFFTGVGKSGFVANKISQTLISLGIKSGFLNPLDALHGDIGILSSDDILVMFS 109
           ++ C+G +  +G+GKSG V  KIS TL S G  S F++P +A HGD+G+++  D+L++ S
Sbjct: 52  IMNCKGHVILSGMGKSGHVGRKISATLASTGTPSFFIHPAEAFHGDLGMITPYDLLILIS 111

Query: 110 KSGNTEELLKVVPCAKAKGAYLVSVTSVEGNALAAVCDMNVHLPVERELCPFDLAPVTST 169
            SG T+E+LK+VP  K  G  ++++T+   + LA   D  + L +  E CP +LAP TST
Sbjct: 112 ASGETDEILKLVPSLKNFGNRIIAITNNGNSTLAKNADAVLELHMANETCPNNLAPTTST 171

Query: 170 AIQMVFGDTVAIAMMGARNLTRDEYAANHPAGRIGKSLIFKVQDVMKPQKELPVCKEGDL 229
            + M  GD +AIAM+  R    +++A  HP G +G+ L+ +V DVM  Q ++P  +  D 
Sbjct: 172 TLTMAIGDALAIAMIHQRKFMPNDFARYHPGGSLGRRLLTRVADVM--QHDVPAVQL-DA 228

Query: 230 IMDQLVELTSKGC-GCLLVIDEEYHLIGTFTDGDLRRTLKASGEGIFKLTVGEMCNRSPR 288
               +++  + GC G ++V D E  L G  TDGDLRR ++  G  +   T  +M  R P 
Sbjct: 229 SFKTVIQRITSGCQGMVMVEDAEGGLAGIITDGDLRRFMEKEGS-LTSATAAQMMTREPL 287

Query: 289 TIGPDAMAVEAMQKMESPPSPVQFLPVINRQNILIGIVTL 328
           T+  D M +EA +KM+     V  L V N+ N + G+V +
Sbjct: 288 TLPEDTMIIEAEEKMQK--HRVSTLLVTNKANKVTGLVRI 325

Involved in the biosynthesis of K-antigen capsules. Catalyzes the reversible aldol-ketol isomerization between D-ribulose 5-phosphate (Ru5P) and D-arabinose 5-phosphate (A5P).

Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) (taxid: 199310)

EC: 5

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 1

EC: 3

>sp|Q47334|KPSF5_ECOLX Arabinose 5-phosphate isomerase KpsF OS=Escherichia coli GN=kpsF PE=3 SV=1

 Score =  187 bits (474), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 103/280 (36%), Positives = 164/280 (58%), Gaps = 7/280 (2%)

Query: 50  LLKCRGTIFFTGVGKSGFVANKISQTLISLGIKSGFLNPLDALHGDIGILSSDDILVMFS 109
           ++ C+G +  +G+GKSG V  K+S TL S G  S F++P +A HGD+G+++  D+L++ S
Sbjct: 52  IMNCKGHVILSGMGKSGHVGRKMSATLASTGTPSFFIHPAEAFHGDLGMITPYDLLILIS 111

Query: 110 KSGNTEELLKVVPCAKAKGAYLVSVTSVEGNALAAVCDMNVHLPVERELCPFDLAPVTST 169
            SG T+E+LK+VP  K  G  ++++T+   + LA   D  + L +  E CP +LAP TST
Sbjct: 112 ASGETDEILKLVPSLKNFGNRIIAITNNGNSTLAKNADAVLELHMANETCPNNLAPTTST 171

Query: 170 AIQMVFGDTVAIAMMGARNLTRDEYAANHPAGRIGKSLIFKVQDVMKPQKELPVCKEGDL 229
            + M  GD +AIAM+  R    +++A  HP G +G+ L+ +V DVM  Q ++P  +  D 
Sbjct: 172 TLTMAIGDALAIAMIHQRKFMPNDFARYHPGGSLGRRLLTRVADVM--QHDVPAVQL-DA 228

Query: 230 IMDQLVELTSKGC-GCLLVIDEEYHLIGTFTDGDLRRTLKASGEGIFKLTVGEMCNRSPR 288
               +++  + GC G ++V D E  L G  TDGDLRR ++   + +   T  +M  R P 
Sbjct: 229 SFKTVIQRITSGCQGMVMVEDAEGGLAGIITDGDLRRFMEKE-DSLTSATAAQMMTREPL 287

Query: 289 TIGPDAMAVEAMQKMESPPSPVQFLPVINRQNILIGIVTL 328
           T+  D M +EA +KM+     V  L V N+ N + G+V +
Sbjct: 288 TLPEDTMIIEAEEKMQK--HRVSTLLVTNKANKVTGLVRI 325

Involved in the biosynthesis of K-antigen capsules. Catalyzes the reversible aldol-ketol isomerization between D-ribulose 5-phosphate (Ru5P) and D-arabinose 5-phosphate (A5P).

Escherichia coli (taxid: 562)

EC: 5

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 1

EC: 3

>sp|P42502|KPSF1_ECOLX Arabinose 5-phosphate isomerase KpsF OS=Escherichia coli GN=kpsF PE=3 SV=1

 Score =  181 bits (459), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 96/256 (37%), Positives = 153/256 (59%), Gaps = 5/256 (1%)

Query: 50  LLKCRGTIFFTGVGKSGFVANKISQTLISLGIKSGFLNPLDALHGDIGILSSDDILVMFS 109
           ++ C+G +  +G+GKSG V  K+S TL S G  S F++P +A HGD+G+++  D+L++ S
Sbjct: 52  IMNCKGHVILSGMGKSGHVGRKMSATLASTGTPSFFIHPAEAFHGDLGMITPYDLLILIS 111

Query: 110 KSGNTEELLKVVPCAKAKGAYLVSVTSVEGNALAAVCDMNVHLPVERELCPFDLAPVTST 169
            SG T+E+LK+VP  K  G  ++++T+   + LA   D  + L +  E CP +LAP TST
Sbjct: 112 ASGETDEILKLVPSLKNFGNRIIAITNNGNSTLAKNADAVLELHMANETCPNNLAPTTST 171

Query: 170 AIQMVFGDTVAIAMMGARNLTRDEYAANHPAGRIGKSLIFKVQDVMKPQKELPVCKEGDL 229
            + M  GD +AIAM+  R    +++A  HP G +G+ L+ +V DVM  Q ++P  +  D 
Sbjct: 172 TLTMAIGDALAIAMIRQRKFMPNDFARYHPGGSLGRRLLTRVADVM--QHDVPAVQL-DA 228

Query: 230 IMDQLVELTSKGC-GCLLVIDEEYHLIGTFTDGDLRRTLKASGEGIFKLTVGEMCNRSPR 288
               +++  + GC G ++V D E  L G  TDGDLRR ++   + +   T  +M  R P 
Sbjct: 229 SFKTVIQRITSGCQGMVMVEDAEGGLAGIITDGDLRRFMEKE-DSLTSATAAQMMTREPL 287

Query: 289 TIGPDAMAVEAMQKME 304
           T+  D M +EA +KM+
Sbjct: 288 TLPEDTMIIEAEEKMQ 303

Involved in the biosynthesis of K-antigen capsules. Catalyzes the reversible aldol-ketol isomerization between D-ribulose 5-phosphate (Ru5P) and D-arabinose 5-phosphate (A5P).

Escherichia coli (taxid: 562)

EC: 5

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 1

EC: 3

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	336
224082832	341	predicted protein [Populus trichocarpa]	1.0	0.985	0.850	1e-167
224066237	341	predicted protein [Populus trichocarpa]	1.0	0.985	0.844	1e-166
255582507	340	Polysialic acid capsule expression prote	0.961	0.95	0.857	1e-164
449468558	348	PREDICTED: probable arabinose 5-phosphat	0.958	0.925	0.835	1e-158
225438103	340	PREDICTED: probable arabinose 5-phosphat	1.0	0.988	0.779	1e-153
356572264	342	PREDICTED: probable arabinose 5-phosphat	0.997	0.979	0.746	1e-148
297816764	350	sugar isomerase domain-containing protei	1.0	0.96	0.748	1e-146
15232565	350	sugar isomerase domain-containing protei	0.964	0.925	0.783	1e-146
294460481	342	unknown [Picea sitchensis]	1.0	0.982	0.687	1e-138
297744159	304	unnamed protein product [Vitis vinifera]	0.898	0.993	0.718	1e-135

>gi|224082832|ref|XP_002306858.1| predicted protein [Populus trichocarpa] gi|222856307|gb|EEE93854.1| predicted protein [Populus trichocarpa]

 Score =  593 bits (1529), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 290/341 (85%), Positives = 315/341 (92%), Gaps = 5/341 (1%)

Query: 1   MGSLPLTLDLLP-----HKVSENTLLDLFKSQQDHLNYFFQHLSLPHTLTFTQTLLKCRG 55
           MGSLP  LDL        ++ + TLL+LFKSQQ+HLNYFFQ+L+L   LTFTQTLL C G
Sbjct: 1   MGSLPPFLDLPSPDAKFQQIDQTTLLNLFKSQQNHLNYFFQNLNLSQALTFTQTLLNCNG 60

Query: 56  TIFFTGVGKSGFVANKISQTLISLGIKSGFLNPLDALHGDIGILSSDDILVMFSKSGNTE 115
           TIFF+GVGKSGFVANKISQTLISLGI++GFL+P+DALHGDIG LSS DILV+FSKSGNTE
Sbjct: 61  TIFFSGVGKSGFVANKISQTLISLGIRAGFLSPVDALHGDIGALSSSDILVLFSKSGNTE 120

Query: 116 ELLKVVPCAKAKGAYLVSVTSVEGNALAAVCDMNVHLPVERELCPFDLAPVTSTAIQMVF 175
           ELL++VPCAKAKGAYLVSVTSVEGNAL AVCDMNVHLP+ERELCPFDLAPVTSTAIQMVF
Sbjct: 121 ELLRLVPCAKAKGAYLVSVTSVEGNALTAVCDMNVHLPLERELCPFDLAPVTSTAIQMVF 180

Query: 176 GDTVAIAMMGARNLTRDEYAANHPAGRIGKSLIFKVQDVMKPQKELPVCKEGDLIMDQLV 235
           GDTVAIA+MGARNL+++EYAANHPAGRIGKSLIFKV+DVMK Q ELP+CKEGDLIMDQLV
Sbjct: 181 GDTVAIALMGARNLSKEEYAANHPAGRIGKSLIFKVKDVMKKQNELPICKEGDLIMDQLV 240

Query: 236 ELTSKGCGCLLVIDEEYHLIGTFTDGDLRRTLKASGEGIFKLTVGEMCNRSPRTIGPDAM 295
           ELTSKGCGCLLVIDE+ HLIGTFTDGDLRRTLKASGEGIFKLTVGEMCNR+PRTIGPDAM
Sbjct: 241 ELTSKGCGCLLVIDEDSHLIGTFTDGDLRRTLKASGEGIFKLTVGEMCNRNPRTIGPDAM 300

Query: 296 AVEAMQKMESPPSPVQFLPVINRQNILIGIVTLHGLVSAGL 336
           AVEAM+KMESPPSPVQFLPVI   NILIGIVTLHGLVSAGL
Sbjct: 301 AVEAMKKMESPPSPVQFLPVIKDDNILIGIVTLHGLVSAGL 341

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224066237|ref|XP_002302040.1| predicted protein [Populus trichocarpa] gi|118483855|gb|ABK93818.1| unknown [Populus trichocarpa] gi|222843766|gb|EEE81313.1| predicted protein [Populus trichocarpa]

 Score =  591 bits (1524), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 288/341 (84%), Positives = 315/341 (92%), Gaps = 5/341 (1%)

Query: 1   MGSLPLTLDL-----LPHKVSENTLLDLFKSQQDHLNYFFQHLSLPHTLTFTQTLLKCRG 55
           MGSLP +LDL        ++ + TLL+LFKSQQ+HLNYFF++L L  TLTFTQTLL C G
Sbjct: 1   MGSLPPSLDLPSPNAKSQQIDQTTLLNLFKSQQNHLNYFFRNLDLSQTLTFTQTLLHCNG 60

Query: 56  TIFFTGVGKSGFVANKISQTLISLGIKSGFLNPLDALHGDIGILSSDDILVMFSKSGNTE 115
           TIFF+GVGKSGFVANKISQTLISLGI++GFL+PLDALHGDIG LS+ DILV+FSKSGNTE
Sbjct: 61  TIFFSGVGKSGFVANKISQTLISLGIRAGFLSPLDALHGDIGALSASDILVLFSKSGNTE 120

Query: 116 ELLKVVPCAKAKGAYLVSVTSVEGNALAAVCDMNVHLPVERELCPFDLAPVTSTAIQMVF 175
           ELL++VPCAKAKGAYLVSVTSVEGNAL AVCD+NV LP+ERELCPFDLAPVTSTAIQMVF
Sbjct: 121 ELLRLVPCAKAKGAYLVSVTSVEGNALTAVCDLNVRLPLERELCPFDLAPVTSTAIQMVF 180

Query: 176 GDTVAIAMMGARNLTRDEYAANHPAGRIGKSLIFKVQDVMKPQKELPVCKEGDLIMDQLV 235
           GDTVAIA+MGARNL+++EYAANHPAGRIGKSLIFKV+DVMK Q ELP+CKEGDLIMDQLV
Sbjct: 181 GDTVAIALMGARNLSKEEYAANHPAGRIGKSLIFKVKDVMKKQNELPICKEGDLIMDQLV 240

Query: 236 ELTSKGCGCLLVIDEEYHLIGTFTDGDLRRTLKASGEGIFKLTVGEMCNRSPRTIGPDAM 295
           ELTSKGCGCLLVIDEE+HLIGTFTDGDLRRTLKASGE IFKLTVGEMCNR+PRTIGPDAM
Sbjct: 241 ELTSKGCGCLLVIDEEHHLIGTFTDGDLRRTLKASGEAIFKLTVGEMCNRNPRTIGPDAM 300

Query: 296 AVEAMQKMESPPSPVQFLPVINRQNILIGIVTLHGLVSAGL 336
           AVEAM+KMESPPSPVQFLPVI   NILIGIVTLHGLVSAGL
Sbjct: 301 AVEAMKKMESPPSPVQFLPVIKDDNILIGIVTLHGLVSAGL 341

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255582507|ref|XP_002532039.1| Polysialic acid capsule expression protein kpsF, putative [Ricinus communis] gi|223528309|gb|EEF30355.1| Polysialic acid capsule expression protein kpsF, putative [Ricinus communis]

 Score =  583 bits (1504), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 277/323 (85%), Positives = 309/323 (95%)

Query: 14  KVSENTLLDLFKSQQDHLNYFFQHLSLPHTLTFTQTLLKCRGTIFFTGVGKSGFVANKIS 73
           ++ +NTLL+LFKSQQ+HLNYFFQ+L +  TL+FTQTLL  RGTI FTGVGKSGFVANKIS
Sbjct: 18  QIDQNTLLNLFKSQQNHLNYFFQNLDISQTLSFTQTLLNSRGTILFTGVGKSGFVANKIS 77

Query: 74  QTLISLGIKSGFLNPLDALHGDIGILSSDDILVMFSKSGNTEELLKVVPCAKAKGAYLVS 133
           QTL+SLGI++GFL+P+DALHGDIGIL+  DILVMFSKSGNT+ELL++VPCAKAKGA+LVS
Sbjct: 78  QTLVSLGIRAGFLSPVDALHGDIGILTPRDILVMFSKSGNTDELLRLVPCAKAKGAFLVS 137

Query: 134 VTSVEGNALAAVCDMNVHLPVERELCPFDLAPVTSTAIQMVFGDTVAIAMMGARNLTRDE 193
           VTSVEGNALA V DMNV+LP+ERELCPFDLAPVTSTAIQMVFGDT+AIA+MGARNL++DE
Sbjct: 138 VTSVEGNALAMVSDMNVYLPLERELCPFDLAPVTSTAIQMVFGDTIAIALMGARNLSKDE 197

Query: 194 YAANHPAGRIGKSLIFKVQDVMKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYH 253
           YAANHPAGRIGKSLIFKV+DVMK Q ELPVCKEGDLIMDQLVELTS+GCGCLLVIDEEYH
Sbjct: 198 YAANHPAGRIGKSLIFKVKDVMKKQDELPVCKEGDLIMDQLVELTSRGCGCLLVIDEEYH 257

Query: 254 LIGTFTDGDLRRTLKASGEGIFKLTVGEMCNRSPRTIGPDAMAVEAMQKMESPPSPVQFL 313
           LIGTFTDGDLRRTLKASGE IFKLTVGEMCNR+PRTIGPDAMAVEAM+KMESPPSPVQFL
Sbjct: 258 LIGTFTDGDLRRTLKASGEAIFKLTVGEMCNRNPRTIGPDAMAVEAMKKMESPPSPVQFL 317

Query: 314 PVINRQNILIGIVTLHGLVSAGL 336
           PVI+++NI+IGIVTLHGLVSAGL
Sbjct: 318 PVIDQKNIVIGIVTLHGLVSAGL 340

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449468558|ref|XP_004151988.1| PREDICTED: probable arabinose 5-phosphate isomerase-like [Cucumis sativus] gi|449524494|ref|XP_004169257.1| PREDICTED: probable arabinose 5-phosphate isomerase-like [Cucumis sativus]

 Score =  565 bits (1455), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 269/322 (83%), Positives = 300/322 (93%)

Query: 15  VSENTLLDLFKSQQDHLNYFFQHLSLPHTLTFTQTLLKCRGTIFFTGVGKSGFVANKISQ 74
           ++E+TLL+LFKSQQ+HLN+FFQ+L L  TL FT TLL   GTIFF+GVGKSGFVA KISQ
Sbjct: 27  INESTLLNLFKSQQNHLNFFFQNLDLSQTLKFTATLLNSPGTIFFSGVGKSGFVARKISQ 86

Query: 75  TLISLGIKSGFLNPLDALHGDIGILSSDDILVMFSKSGNTEELLKVVPCAKAKGAYLVSV 134
           TL+SLGI+S FL+PLDALHGDIGIL+S D+LVMFSKSGNTEELL++VPCA+AKGA+L++V
Sbjct: 87  TLVSLGIRSAFLSPLDALHGDIGILNSGDVLVMFSKSGNTEELLRLVPCARAKGAFLIAV 146

Query: 135 TSVEGNALAAVCDMNVHLPVERELCPFDLAPVTSTAIQMVFGDTVAIAMMGARNLTRDEY 194
           TSVEGN L  VCDMNVHLP+ERELCPFDLAPVTSTAIQMVFGDTVAIA+MGARNLT++EY
Sbjct: 147 TSVEGNVLGGVCDMNVHLPLERELCPFDLAPVTSTAIQMVFGDTVAIALMGARNLTKEEY 206

Query: 195 AANHPAGRIGKSLIFKVQDVMKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHL 254
           A NHPAGRIGKSLIF+V+DVMK Q ELPVCKEGDLIMDQLVELTSKGCGCLLVID+EY L
Sbjct: 207 ATNHPAGRIGKSLIFRVKDVMKKQNELPVCKEGDLIMDQLVELTSKGCGCLLVIDDEYRL 266

Query: 255 IGTFTDGDLRRTLKASGEGIFKLTVGEMCNRSPRTIGPDAMAVEAMQKMESPPSPVQFLP 314
           IGTFTDGDLRRTLKASGE IFKLTVGEMCNR PRTI P+AMAV+AM+KME+PPSPVQFLP
Sbjct: 267 IGTFTDGDLRRTLKASGEAIFKLTVGEMCNRKPRTIDPEAMAVDAMKKMEAPPSPVQFLP 326

Query: 315 VINRQNILIGIVTLHGLVSAGL 336
           VIN+Q ILIGIVTLHGLVSAGL
Sbjct: 327 VINQQTILIGIVTLHGLVSAGL 348

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225438103|ref|XP_002277616.1| PREDICTED: probable arabinose 5-phosphate isomerase [Vitis vinifera]

 Score =  545 bits (1405), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 265/340 (77%), Positives = 301/340 (88%), Gaps = 4/340 (1%)

Query: 1   MGSLPLTLDLLPH--KVSENTLLDLFKSQQDHLNYFFQHLSLPHTLTFTQTLLKCRGTIF 58
           MGSLP   D   H  +++   L++LFK+QQ +LN+FF +L L  TL FTQTLLK  GTIF
Sbjct: 1   MGSLPSFSDAHSHFKEINTTELMNLFKTQQKYLNFFFHNLDLNQTLIFTQTLLKIEGTIF 60

Query: 59  FTGVGKSGFVANKISQTLISLGIKSGFLNPLDALHGDIGILS--SDDILVMFSKSGNTEE 116
           FTGVGKSGFVA KISQTL+SLGI++ FL+P+DALHGDIGILS  + + +V FSKSGN+EE
Sbjct: 61  FTGVGKSGFVAQKISQTLVSLGIRASFLSPVDALHGDIGILSGGTSNAVVFFSKSGNSEE 120

Query: 117 LLKVVPCAKAKGAYLVSVTSVEGNALAAVCDMNVHLPVERELCPFDLAPVTSTAIQMVFG 176
           LLK+ PCAKAKGAYL+SVTS E N L AVCD+NVHLP+ERELCPFDLAPVTST IQMVFG
Sbjct: 121 LLKLAPCAKAKGAYLISVTSTEDNLLRAVCDLNVHLPLERELCPFDLAPVTSTTIQMVFG 180

Query: 177 DTVAIAMMGARNLTRDEYAANHPAGRIGKSLIFKVQDVMKPQKELPVCKEGDLIMDQLVE 236
           DTVA+A+MGARNLTRDEYAANHPAGRIGKSLIFKV+DVMK Q ELPVCKEGDLIMDQLVE
Sbjct: 181 DTVAVALMGARNLTRDEYAANHPAGRIGKSLIFKVKDVMKKQDELPVCKEGDLIMDQLVE 240

Query: 237 LTSKGCGCLLVIDEEYHLIGTFTDGDLRRTLKASGEGIFKLTVGEMCNRSPRTIGPDAMA 296
           LTSKGCGCLLVID+EY LIGTFTDGDLRRTLKASGEGIFKLTVG+MCNR+PRTI  + MA
Sbjct: 241 LTSKGCGCLLVIDDEYRLIGTFTDGDLRRTLKASGEGIFKLTVGQMCNRNPRTISSNVMA 300

Query: 297 VEAMQKMESPPSPVQFLPVINRQNILIGIVTLHGLVSAGL 336
           V+AM++ME+PPSPVQFLPV++ QN+LIGIVTLHGLVSAGL
Sbjct: 301 VDAMRRMEAPPSPVQFLPVLDDQNVLIGIVTLHGLVSAGL 340

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356572264|ref|XP_003554289.1| PREDICTED: probable arabinose 5-phosphate isomerase-like [Glycine max]

 Score =  531 bits (1369), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 256/343 (74%), Positives = 301/343 (87%), Gaps = 8/343 (2%)

Query: 1   MGSLPL-------TLDLLPHKVSENTLLDLFKSQQDHLNYFFQHLSLPHTLTFTQTLLKC 53
           MGSLP+        LD   H + E TL  LFKSQQ HLN+FF H+    TL FT+ LL  
Sbjct: 1   MGSLPVPAFPSKHCLDESSH-IDEATLSALFKSQQSHLNFFFDHIDHSQTLAFTRALLNA 59

Query: 54  RGTIFFTGVGKSGFVANKISQTLISLGIKSGFLNPLDALHGDIGILSSDDILVMFSKSGN 113
            GT+FFTGVGKSGFVA+KISQTL+SLG++S FL+P+DALHGDIGIL++ D+L++ SKSG 
Sbjct: 60  AGTVFFTGVGKSGFVAHKISQTLVSLGVRSAFLSPVDALHGDIGILTNRDVLILLSKSGA 119

Query: 114 TEELLKVVPCAKAKGAYLVSVTSVEGNALAAVCDMNVHLPVERELCPFDLAPVTSTAIQM 173
           TEELL++VPCA+AKGA L+++TSVEGNALAA CDM+VHLP++RELCPF+LAPVTSTAIQM
Sbjct: 120 TEELLRLVPCARAKGALLIALTSVEGNALAAACDMSVHLPLQRELCPFNLAPVTSTAIQM 179

Query: 174 VFGDTVAIAMMGARNLTRDEYAANHPAGRIGKSLIFKVQDVMKPQKELPVCKEGDLIMDQ 233
           VFGDTVAIA+M ARNLT++EYAANHPAG+IGKSLIFKV+DVMK Q ELP+C+E DLIMDQ
Sbjct: 180 VFGDTVAIALMEARNLTKEEYAANHPAGKIGKSLIFKVKDVMKKQDELPICRESDLIMDQ 239

Query: 234 LVELTSKGCGCLLVIDEEYHLIGTFTDGDLRRTLKASGEGIFKLTVGEMCNRSPRTIGPD 293
           LVELT+KGCGCLLVI + Y LIGTFTDGDLRRTL+ASGE IFKLTVG+MCNR+PRTIGP+
Sbjct: 240 LVELTTKGCGCLLVIGDGYRLIGTFTDGDLRRTLRASGEAIFKLTVGQMCNRNPRTIGPE 299

Query: 294 AMAVEAMQKMESPPSPVQFLPVINRQNILIGIVTLHGLVSAGL 336
           AMAV+AM+KME+PPSPVQFLPVIN ++ILIGIVTLHGLVSAGL
Sbjct: 300 AMAVDAMKKMEAPPSPVQFLPVINDESILIGIVTLHGLVSAGL 342

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297816764|ref|XP_002876265.1| sugar isomerase domain-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297322103|gb|EFH52524.1| sugar isomerase domain-containing protein [Arabidopsis lyrata subsp. lyrata]

 Score =  524 bits (1349), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 262/350 (74%), Positives = 298/350 (85%), Gaps = 14/350 (4%)

Query: 1   MGSLP---LTLDLLPH-----------KVSENTLLDLFKSQQDHLNYFFQHLSLPHTLTF 46
           MGSLP   L L  + H           ++S + LL+LF SQQD LN+FF+HL L  TL F
Sbjct: 1   MGSLPPPSLDLSSIDHNSLKNGGSSHQEISRDNLLNLFTSQQDLLNHFFKHLDLSQTLDF 60

Query: 47  TQTLLKCRGTIFFTGVGKSGFVANKISQTLISLGIKSGFLNPLDALHGDIGILSSDDILV 106
           ++ LL   GT+FFTGVGKS FVANK+SQTL+SL  +S FL+PLDALHGDIG LS  D+LV
Sbjct: 61  SRILLSTTGTVFFTGVGKSAFVANKVSQTLVSLSFRSSFLSPLDALHGDIGALSPRDVLV 120

Query: 107 MFSKSGNTEELLKVVPCAKAKGAYLVSVTSVEGNALAAVCDMNVHLPVERELCPFDLAPV 166
            FSKSG TEELL++VPCA+AKGA+LVS+TSV GN LA VCDMNVHLP++RELCPF+LAPV
Sbjct: 121 FFSKSGATEELLRLVPCARAKGAFLVSLTSVSGNPLAGVCDMNVHLPLQRELCPFNLAPV 180

Query: 167 TSTAIQMVFGDTVAIAMMGARNLTRDEYAANHPAGRIGKSLIFKVQDVMKPQKELPVCKE 226
           TSTAIQMVFGDT+A+A+M ARNL+++EYAANHPAGRIGKSLIFKV+DVMK Q+ELPVCKE
Sbjct: 181 TSTAIQMVFGDTIAVALMAARNLSKEEYAANHPAGRIGKSLIFKVKDVMKKQEELPVCKE 240

Query: 227 GDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRRTLKASGEGIFKLTVGEMCNRS 286
           GDLIMDQLVELTSKGCGCLLV+DE Y LIGTFTDGDLRRTLKASGE IFKL+VGEMCNR 
Sbjct: 241 GDLIMDQLVELTSKGCGCLLVVDEHYRLIGTFTDGDLRRTLKASGEAIFKLSVGEMCNRK 300

Query: 287 PRTIGPDAMAVEAMQKMESPPSPVQFLPVINRQNILIGIVTLHGLVSAGL 336
           PRTIGP+ MAVEAM+KMESPPSPVQFLPV+N  N LIGIVTLHGLVSAGL
Sbjct: 301 PRTIGPETMAVEAMKKMESPPSPVQFLPVVNEDNTLIGIVTLHGLVSAGL 350

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15232565|ref|NP_191029.1| sugar isomerase domain-containing protein [Arabidopsis thaliana] gi|75182157|sp|Q9M1T1.1|SETH3_ARATH RecName: Full=Probable arabinose 5-phosphate isomerase; Short=API; AltName: Full=CBS domain-containing protein CBSSIS1 gi|7258373|emb|CAB77589.1| sugar-phosphate isomerase-like protein [Arabidopsis thaliana] gi|110742297|dbj|BAE99073.1| sugar-phosphate isomerase - like protein [Arabidopsis thaliana] gi|332645746|gb|AEE79267.1| sugar isomerase domain-containing protein [Arabidopsis thaliana]

 Score =  522 bits (1344), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 254/324 (78%), Positives = 289/324 (89%)

Query: 13  HKVSENTLLDLFKSQQDHLNYFFQHLSLPHTLTFTQTLLKCRGTIFFTGVGKSGFVANKI 72
            ++S + LL+LFKSQQD LN+FF+HL L  TL F++ LL   GT+FFTGVGKS FVANK+
Sbjct: 27  QEISHDNLLNLFKSQQDLLNHFFKHLDLSQTLDFSRILLSTTGTVFFTGVGKSAFVANKV 86

Query: 73  SQTLISLGIKSGFLNPLDALHGDIGILSSDDILVMFSKSGNTEELLKVVPCAKAKGAYLV 132
           SQTL+SL  +S FL+PLDALHGDIG LS  D+LV FSKSG TEELL++VPCA+AKGA+LV
Sbjct: 87  SQTLVSLSFRSSFLSPLDALHGDIGALSPRDVLVFFSKSGATEELLRLVPCARAKGAFLV 146

Query: 133 SVTSVEGNALAAVCDMNVHLPVERELCPFDLAPVTSTAIQMVFGDTVAIAMMGARNLTRD 192
           S+TSV GN LA VCDMNVHLP++RELCPF+LAPVTSTAIQMVFGDT+A+A+M ARNL+++
Sbjct: 147 SLTSVSGNPLAGVCDMNVHLPLQRELCPFNLAPVTSTAIQMVFGDTIAVALMAARNLSKE 206

Query: 193 EYAANHPAGRIGKSLIFKVQDVMKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEEY 252
           EYAANHPAGRIGKSLIFKV+DVMK Q+ELPVCKEGDLIMDQLVELTSKGCGCLLV+DE  
Sbjct: 207 EYAANHPAGRIGKSLIFKVKDVMKKQEELPVCKEGDLIMDQLVELTSKGCGCLLVVDEHS 266

Query: 253 HLIGTFTDGDLRRTLKASGEGIFKLTVGEMCNRSPRTIGPDAMAVEAMQKMESPPSPVQF 312
            LIGTFTDGDLRRTLKASGE IFKL+VGEMCNR PRTIGP+ MAVEAM+KMESPPSPVQF
Sbjct: 267 RLIGTFTDGDLRRTLKASGEAIFKLSVGEMCNRKPRTIGPETMAVEAMKKMESPPSPVQF 326

Query: 313 LPVINRQNILIGIVTLHGLVSAGL 336
           LPV+N  N LIGIVTLHGLVSAGL
Sbjct: 327 LPVVNEDNTLIGIVTLHGLVSAGL 350

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|294460481|gb|ADE75818.1| unknown [Picea sitchensis]

 Score =  496 bits (1278), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 235/342 (68%), Positives = 284/342 (83%), Gaps = 6/342 (1%)

Query: 1   MGSLPLTLDLLPHKVSENT------LLDLFKSQQDHLNYFFQHLSLPHTLTFTQTLLKCR 54
           MG+LP  +D +      N+      +  LF+ Q+ HL+YFF ++       FTQ L+  +
Sbjct: 1   MGALPEPMDSITKDNGINSEFGTLQMQKLFEEQRKHLDYFFSNVEYAQLQAFTQVLMAAK 60

Query: 55  GTIFFTGVGKSGFVANKISQTLISLGIKSGFLNPLDALHGDIGILSSDDILVMFSKSGNT 114
           G IFFTGVGKSGFVA KI+QT +S G K+ FL+P DALHGDIGI+  +D+LV+FSKSG T
Sbjct: 61  GVIFFTGVGKSGFVAQKITQTFVSTGTKAVFLSPTDALHGDIGIVGPNDVLVLFSKSGTT 120

Query: 115 EELLKVVPCAKAKGAYLVSVTSVEGNALAAVCDMNVHLPVERELCPFDLAPVTSTAIQMV 174
           EELL++VPCA+AKGAY+V+VTS+  + L+ VCDM+V+LP++RELCPFDLAPVTSTAIQM+
Sbjct: 121 EELLRLVPCARAKGAYMVAVTSLRNSQLSNVCDMHVYLPLDRELCPFDLAPVTSTAIQML 180

Query: 175 FGDTVAIAMMGARNLTRDEYAANHPAGRIGKSLIFKVQDVMKPQKELPVCKEGDLIMDQL 234
           FGDTVAIA+M A+ LTR++YA NHPAGRIGK LIF+VQDVMK   ELP+CKE DLIMDQL
Sbjct: 181 FGDTVAIALMQAKKLTREQYALNHPAGRIGKRLIFRVQDVMKRHDELPLCKENDLIMDQL 240

Query: 235 VELTSKGCGCLLVIDEEYHLIGTFTDGDLRRTLKASGEGIFKLTVGEMCNRSPRTIGPDA 294
           +ELTSKGCGCLLV+DEE HLIGTFTDGDLRR LK+  EG+FKLTVGEMCNR+PRTIGPDA
Sbjct: 241 MELTSKGCGCLLVVDEECHLIGTFTDGDLRRALKSIREGVFKLTVGEMCNRNPRTIGPDA 300

Query: 295 MAVEAMQKMESPPSPVQFLPVINRQNILIGIVTLHGLVSAGL 336
           MA+EAMQKMESPPSPVQFLP++N  N++IGIVTLHGLVSAGL
Sbjct: 301 MAIEAMQKMESPPSPVQFLPIVNNDNVVIGIVTLHGLVSAGL 342

Source: Picea sitchensis

Species: Picea sitchensis

Genus: Picea

Family: Pinaceae

Order: Coniferales

Class: Coniferopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297744159|emb|CBI37129.3| unnamed protein product [Vitis vinifera]

 Score =  486 bits (1251), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 243/338 (71%), Positives = 271/338 (80%), Gaps = 36/338 (10%)

Query: 1   MGSLPLTLDLLPH--KVSENTLLDLFKSQQDHLNYFFQHLSLPHTLTFTQTLLKCRGTIF 58
           MGSLP   D   H  +++   L++LFK+QQ +LN+FF +L L  TL FTQTLLK  GTIF
Sbjct: 1   MGSLPSFSDAHSHFKEINTTELMNLFKTQQKYLNFFFHNLDLNQTLIFTQTLLKIEGTIF 60

Query: 59  FTGVGKSGFVANKISQTLISLGIKSGFLNPLDALHGDIGILSSDDILVMFSKSGNTEELL 118
           FTGVGKSGFVA KISQTL                                  SGN+EELL
Sbjct: 61  FTGVGKSGFVAQKISQTL----------------------------------SGNSEELL 86

Query: 119 KVVPCAKAKGAYLVSVTSVEGNALAAVCDMNVHLPVERELCPFDLAPVTSTAIQMVFGDT 178
           K+ PCAKAKGAYL+SVTS E N L AVCD+NVHLP+ERELCPFDLAPVTST IQMVFGDT
Sbjct: 87  KLAPCAKAKGAYLISVTSTEDNLLRAVCDLNVHLPLERELCPFDLAPVTSTTIQMVFGDT 146

Query: 179 VAIAMMGARNLTRDEYAANHPAGRIGKSLIFKVQDVMKPQKELPVCKEGDLIMDQLVELT 238
           VA+A+MGARNLTRDEYAANHPAGRIGKSLIFKV+DVMK Q ELPVCKEGDLIMDQLVELT
Sbjct: 147 VAVALMGARNLTRDEYAANHPAGRIGKSLIFKVKDVMKKQDELPVCKEGDLIMDQLVELT 206

Query: 239 SKGCGCLLVIDEEYHLIGTFTDGDLRRTLKASGEGIFKLTVGEMCNRSPRTIGPDAMAVE 298
           SKGCGCLLVID+EY LIGTFTDGDLRRTLKASGEGIFKLTVG+MCNR+PRTI  + MAV+
Sbjct: 207 SKGCGCLLVIDDEYRLIGTFTDGDLRRTLKASGEGIFKLTVGQMCNRNPRTISSNVMAVD 266

Query: 299 AMQKMESPPSPVQFLPVINRQNILIGIVTLHGLVSAGL 336
           AM++ME+PPSPVQFLPV++ QN+LIGIVTLHGLVSAGL
Sbjct: 267 AMRRMEAPPSPVQFLPVLDDQNVLIGIVTLHGLVSAGL 304

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	336
TAIR|locus:2102440	350	SETH3 [Arabidopsis thaliana (t	0.961	0.922	0.786	1.5e-136
UNIPROTKB|Q4KI82	324	kdsD "Arabinose 5-phosphate is	0.928	0.962	0.361	2.4e-53
UNIPROTKB|Q47VI6	321	CPS_4538 "Arabinose 5-phosphat	0.851	0.890	0.356	5.6e-52
TIGR_CMR|CPS_4538	321	CPS_4538 "KpsF/GutQ family pro	0.851	0.890	0.356	5.6e-52
UNIPROTKB|Q83DI1	324	CBU_0750 "Arabinose 5-phosphat	0.863	0.895	0.358	7.2e-52
TIGR_CMR|CBU_0750	324	CBU_0750 "KpsF/GutQ family pro	0.863	0.895	0.358	7.2e-52
TIGR_CMR|SO_3956	325	SO_3956 "carbohydrate isomeras	0.925	0.956	0.350	1.2e-51
UNIPROTKB|Q9KP53	326	VC_2523 "Arabinose 5-phosphate	0.958	0.987	0.324	1.4e-48
TIGR_CMR|VC_2523	326	VC_2523 "conserved hypothetica	0.958	0.987	0.324	1.4e-48
TIGR_CMR|CJE_1617	315	CJE_1617 "arabinose-5-phosphat	0.824	0.879	0.368	5.4e-47

TAIR|locus:2102440 SETH3 [Arabidopsis thaliana (taxid:3702)]

 Score = 1337 (475.7 bits), Expect = 1.5e-136, P = 1.5e-136
 Identities = 254/323 (78%), Positives = 289/323 (89%)

Query:    14 KVSENTLLDLFKSQQDHLNYFFQHLSLPHTLTFTQTLLKCRGTIFFTGVGKSGFVANKIS 73
             ++S + LL+LFKSQQD LN+FF+HL L  TL F++ LL   GT+FFTGVGKS FVANK+S
Sbjct:    28 EISHDNLLNLFKSQQDLLNHFFKHLDLSQTLDFSRILLSTTGTVFFTGVGKSAFVANKVS 87

Query:    74 QTLISLGIKSGFLNPLDALHGDIGILSSDDILVMFSKSGNTEELLKVVPCAKAKGAYLVS 133
             QTL+SL  +S FL+PLDALHGDIG LS  D+LV FSKSG TEELL++VPCA+AKGA+LVS
Sbjct:    88 QTLVSLSFRSSFLSPLDALHGDIGALSPRDVLVFFSKSGATEELLRLVPCARAKGAFLVS 147

Query:   134 VTSVEGNALAAVCDMNVHLPVERELCPFDLAPVTSTAIQMVFGDTVAIAMMGARNLTRDE 193
             +TSV GN LA VCDMNVHLP++RELCPF+LAPVTSTAIQMVFGDT+A+A+M ARNL+++E
Sbjct:   148 LTSVSGNPLAGVCDMNVHLPLQRELCPFNLAPVTSTAIQMVFGDTIAVALMAARNLSKEE 207

Query:   194 YAANHPAGRIGKSLIFKVQDVMKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYH 253
             YAANHPAGRIGKSLIFKV+DVMK Q+ELPVCKEGDLIMDQLVELTSKGCGCLLV+DE   
Sbjct:   208 YAANHPAGRIGKSLIFKVKDVMKKQEELPVCKEGDLIMDQLVELTSKGCGCLLVVDEHSR 267

Query:   254 LIGTFTDGDLRRTLKASGEGIFKLTVGEMCNRSPRTIGPDAMAVEAMQKMESPPSPVQFL 313
             LIGTFTDGDLRRTLKASGE IFKL+VGEMCNR PRTIGP+ MAVEAM+KMESPPSPVQFL
Sbjct:   268 LIGTFTDGDLRRTLKASGEAIFKLSVGEMCNRKPRTIGPETMAVEAMKKMESPPSPVQFL 327

Query:   314 PVINRQNILIGIVTLHGLVSAGL 336
             PV+N  N LIGIVTLHGLVSAGL
Sbjct:   328 PVVNEDNTLIGIVTLHGLVSAGL 350

GO:0005975 "carbohydrate metabolic process" evidence=IEA

GO:0016853 "isomerase activity" evidence=IEA

GO:0030246 "carbohydrate binding" evidence=IEA

GO:0019243 "methylglyoxal catabolic process to D-lactate" evidence=RCA

UNIPROTKB|Q4KI82 kdsD "Arabinose 5-phosphate isomerase" [Pseudomonas protegens Pf-5 (taxid:220664)]

 Score = 552 (199.4 bits), Expect = 2.4e-53, P = 2.4e-53
 Identities = 116/321 (36%), Positives = 192/321 (59%)

Query:    22 DLFKSQQDHLNYFFQHLS--LPHT-LTFTQT---LLKCRGTIFFTGVGKSGFVANKISQT 75
             DL +S Q  +    Q +   LPH    F +    +L  +G +   G+GKSG V NKI+ T
Sbjct:     6 DLIQSAQRTIRLELQAVEGLLPHIDADFVRACEMILASKGRVVVVGMGKSGHVGNKIAAT 65

Query:    76 LISLGIKSGFLNPLDALHGDIGILSSDDILVMFSKSGNTEELLKVVPCAKAKGAYLVSVT 135
             L S G  + F++P +A HGD+G+++ DD+++  S SG+T E++ ++P  K  G  L+S+T
Sbjct:    66 LASTGTTAFFVHPAEASHGDMGMITRDDVILALSNSGSTNEIVTLLPLIKRLGIQLISLT 125

Query:   136 SVEGNALAAVCDMNVHLPVERELCPFDLAPVTSTAIQMVFGDTVAIAMMGARNLTRDEYA 195
                 + LA   D+N+++ VE E CP +LAP +ST   +V GD +A+A++ AR  T +++A
Sbjct:   126 GNPESPLAKAADVNLNVHVEHEACPLNLAPTSSTTAALVMGDALAVALLEARGFTAEDFA 185

Query:   196 ANHPAGRIGKSLIFKVQDVMKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLI 255
              +HP G +G+ L+ KV++VM    +LP  + G L+ D L+E+T KG G  ++++ +  L 
Sbjct:   186 FSHPGGALGRRLLLKVENVMHEGSDLPQVQRGTLLKDALMEMTRKGLGMTVILEADGRLA 245

Query:   256 GTFTDGDLRRTLKASGEGIFKLTVGEMCNRSPRTIGPDAMAVEAMQKMESPPSPVQFLPV 315
             G FTDGDLRRTL  + + I   T+  +     +T   D +A EA++ ME     +  L V
Sbjct:   246 GIFTDGDLRRTLDRAID-IHHATIDSVMTPHGKTARADMLAAEALKIMED--HKISALVV 302

Query:   316 INRQNILIGIVTLHGLVSAGL 336
             +++++  IG + +H L+ AG+
Sbjct:   303 VDKEDRPIGALNMHDLLRAGV 323

GO:0009103 "lipopolysaccharide biosynthetic process" evidence=ISS

GO:0019146 "arabinose-5-phosphate isomerase activity" evidence=ISS

UNIPROTKB|Q47VI6 CPS_4538 "Arabinose 5-phosphate isomerase" [Colwellia psychrerythraea 34H (taxid:167879)]

 Score = 539 (194.8 bits), Expect = 5.6e-52, P = 5.6e-52
 Identities = 103/289 (35%), Positives = 173/289 (59%)

Query:    48 QTLLKCRGTIFFTGVGKSGFVANKISQTLISLGIKSGFLNPLDALHGDIGILSSDDILVM 107
             Q +  C+G +   G+GKSG +  KI+ TL S G  S F++P +A HGD+G+++S+D+++ 
Sbjct:    35 QLMFHCKGRVIVIGMGKSGHIGGKIAATLASTGTPSFFVHPGEASHGDLGMVTSNDVVLT 94

Query:   108 FSKSGNTEELLKVVPCAKAKGAYLVSVTSVEGNALAAVCDMNVHLPVERELCPFDLAPVT 167
              S SG T E+L ++P  K  GA L+S+T    + LA + D +V + V  E CP  L P +
Sbjct:    95 ISNSGETSEVLAIIPVIKRIGAKLISMTGNTESTLAKLADTHVCIKVSAEACPLGLTPTS 154

Query:   168 STAIQMVFGDTVAIAMMGARNLTRDEYAANHPAGRIGKSLIFKVQDVMKPQKELPVCKEG 227
             ST   +V GD +A+A++ AR+ T +++A +HP G +GK L+ ++ D+M     +P+  E 
Sbjct:   155 STTATLVMGDALAVALLNARDFTAEDFALSHPGGSLGKRLLLRLSDIMHKDDRVPMISEN 214

Query:   228 DLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRRTLKASGEGIFKLTVGEMCNRSP 287
              LI D LVE++ KG G   +++E+  L+G FTDGDLRR L    + I   ++  +   +P
Sbjct:   215 ALIKDALVEMSLKGLGMTAIVNEQQQLVGLFTDGDLRRVLDNRID-IHSESINTVMTHNP 273

Query:   288 RTIGPDAMAVEAMQKMESPPSPVQFLPVINRQNILIGIVTLHGLVSAGL 336
                  D +A +A++ ME     +  L +++  NI +G + +H  +S+G+
Sbjct:   274 SVAQSDMLAAQALKIMED--KKINGLIIVDSNNIPVGAMNMHDFLSSGV 320

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|CPS_4538 CPS_4538 "KpsF/GutQ family protein" [Colwellia psychrerythraea 34H (taxid:167879)]

 Score = 539 (194.8 bits), Expect = 5.6e-52, P = 5.6e-52
 Identities = 103/289 (35%), Positives = 173/289 (59%)

Query:    48 QTLLKCRGTIFFTGVGKSGFVANKISQTLISLGIKSGFLNPLDALHGDIGILSSDDILVM 107
             Q +  C+G +   G+GKSG +  KI+ TL S G  S F++P +A HGD+G+++S+D+++ 
Sbjct:    35 QLMFHCKGRVIVIGMGKSGHIGGKIAATLASTGTPSFFVHPGEASHGDLGMVTSNDVVLT 94

Query:   108 FSKSGNTEELLKVVPCAKAKGAYLVSVTSVEGNALAAVCDMNVHLPVERELCPFDLAPVT 167
              S SG T E+L ++P  K  GA L+S+T    + LA + D +V + V  E CP  L P +
Sbjct:    95 ISNSGETSEVLAIIPVIKRIGAKLISMTGNTESTLAKLADTHVCIKVSAEACPLGLTPTS 154

Query:   168 STAIQMVFGDTVAIAMMGARNLTRDEYAANHPAGRIGKSLIFKVQDVMKPQKELPVCKEG 227
             ST   +V GD +A+A++ AR+ T +++A +HP G +GK L+ ++ D+M     +P+  E 
Sbjct:   155 STTATLVMGDALAVALLNARDFTAEDFALSHPGGSLGKRLLLRLSDIMHKDDRVPMISEN 214

Query:   228 DLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRRTLKASGEGIFKLTVGEMCNRSP 287
              LI D LVE++ KG G   +++E+  L+G FTDGDLRR L    + I   ++  +   +P
Sbjct:   215 ALIKDALVEMSLKGLGMTAIVNEQQQLVGLFTDGDLRRVLDNRID-IHSESINTVMTHNP 273

Query:   288 RTIGPDAMAVEAMQKMESPPSPVQFLPVINRQNILIGIVTLHGLVSAGL 336
                  D +A +A++ ME     +  L +++  NI +G + +H  +S+G+
Sbjct:   274 SVAQSDMLAAQALKIMED--KKINGLIIVDSNNIPVGAMNMHDFLSSGV 320

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q83DI1 CBU_0750 "Arabinose 5-phosphate isomerase" [Coxiella burnetii RSA 493 (taxid:227377)]

 Score = 538 (194.4 bits), Expect = 7.2e-52, P = 7.2e-52
 Identities = 105/293 (35%), Positives = 175/293 (59%)

Query:    44 LTFTQTLLKCRGTIFFTGVGKSGFVANKISQTLISLGIKSGFLNPLDALHGDIGILSSDD 103
             +T   TL  C+G +   GVGKSG +A KI+ TL S G  S +++P +A HGD+G+++  D
Sbjct:    34 VTACNTLFNCKGRVVVLGVGKSGHIAKKIAATLASTGTPSFYVHPSEASHGDMGMVTPQD 93

Query:   104 ILVMFSKSGNTEELLKVVPCAKAKGAYLVSVTSVEGNALAAVCDMNVHLPVERELCPFDL 163
             + +  S SG T E++ ++P  K  G  L+++T    + LA + D  + + VE+E CP  L
Sbjct:    94 VALAISYSGETPEIINLLPTLKRLGVALIALTGKMQSTLARIADTVIDVSVEQEACPLGL 153

Query:   164 APVTSTAIQMVFGDTVAIAMMGARNLTRDEYAANHPAGRIGKSLIFKVQDVMKPQKELPV 223
             AP +ST   +V GD +AIA++ AR  T D++A  HP G +G+ L+  + D+M P+ ++P+
Sbjct:   154 APTSSTTATLVMGDALAIALLEARGFTADDFARIHPGGSLGRRLLLHIADLMHPKDKMPI 213

Query:   224 CKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRRTLKASGEGIFKLTVGEMC 283
              K   L+ + LVE+T K  G   V+ +   L+G FTDGDLRRTL   G  I +  + ++ 
Sbjct:   214 VKPDCLLDEALVEITKKSLGMTTVVSDSGQLLGVFTDGDLRRTLD-KGYDIHRTPIEKVM 272

Query:   284 NRSPRTIGPDAMAVEAMQKMESPPSPVQFLPVINRQNILIGIVTLHGLVSAGL 336
              ++  T+ P  +A EA++ M+   + +  L V++     +G++ +H L+ AG+
Sbjct:   273 TKNSITVPPKLLAAEALKMMQQ--NKITSLVVVDTDASPVGVIHMHDLLRAGV 323

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|CBU_0750 CBU_0750 "KpsF/GutQ family protein" [Coxiella burnetii RSA 493 (taxid:227377)]

 Score = 538 (194.4 bits), Expect = 7.2e-52, P = 7.2e-52
 Identities = 105/293 (35%), Positives = 175/293 (59%)

Query:    44 LTFTQTLLKCRGTIFFTGVGKSGFVANKISQTLISLGIKSGFLNPLDALHGDIGILSSDD 103
             +T   TL  C+G +   GVGKSG +A KI+ TL S G  S +++P +A HGD+G+++  D
Sbjct:    34 VTACNTLFNCKGRVVVLGVGKSGHIAKKIAATLASTGTPSFYVHPSEASHGDMGMVTPQD 93

Query:   104 ILVMFSKSGNTEELLKVVPCAKAKGAYLVSVTSVEGNALAAVCDMNVHLPVERELCPFDL 163
             + +  S SG T E++ ++P  K  G  L+++T    + LA + D  + + VE+E CP  L
Sbjct:    94 VALAISYSGETPEIINLLPTLKRLGVALIALTGKMQSTLARIADTVIDVSVEQEACPLGL 153

Query:   164 APVTSTAIQMVFGDTVAIAMMGARNLTRDEYAANHPAGRIGKSLIFKVQDVMKPQKELPV 223
             AP +ST   +V GD +AIA++ AR  T D++A  HP G +G+ L+  + D+M P+ ++P+
Sbjct:   154 APTSSTTATLVMGDALAIALLEARGFTADDFARIHPGGSLGRRLLLHIADLMHPKDKMPI 213

Query:   224 CKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRRTLKASGEGIFKLTVGEMC 283
              K   L+ + LVE+T K  G   V+ +   L+G FTDGDLRRTL   G  I +  + ++ 
Sbjct:   214 VKPDCLLDEALVEITKKSLGMTTVVSDSGQLLGVFTDGDLRRTLD-KGYDIHRTPIEKVM 272

Query:   284 NRSPRTIGPDAMAVEAMQKMESPPSPVQFLPVINRQNILIGIVTLHGLVSAGL 336
              ++  T+ P  +A EA++ M+   + +  L V++     +G++ +H L+ AG+
Sbjct:   273 TKNSITVPPKLLAAEALKMMQQ--NKITSLVVVDTDASPVGVIHMHDLLRAGV 323

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

TIGR_CMR|SO_3956 SO_3956 "carbohydrate isomerase, KpsF/GutQ family" [Shewanella oneidensis MR-1 (taxid:211586)]

 Score = 536 (193.7 bits), Expect = 1.2e-51, P = 1.2e-51
 Identities = 111/317 (35%), Positives = 188/317 (59%)

Query:    20 LLDLFKSQQDHLNYFFQHLSLPHTLTFTQTLLKCRGTIFFTGVGKSGFVANKISQTLISL 79
             ++D+ KS  D+L   +Q++         + +L C G +   G+GKSG + NKIS TL S 
Sbjct:    14 VIDIEKSALDNL---YQYVDSAEFAQACELILNCSGKVIVMGMGKSGHIGNKISATLAST 70

Query:    80 GIKSGFLNPLDALHGDIGILSSDDILVMFSKSGNTEELLKVVPCAKAKGAYLVSVTSVEG 139
             G  + F++P +A HGD+G+LS +DI++  S SG + E+L ++P  + K   ++++T    
Sbjct:    71 GTPAFFVHPGEASHGDLGVLSDNDIILAISNSGESSEILALMPVIQRKAIPVIAMTGKPE 130

Query:   140 NALAAVCDMNVHLPVERELCPFDLAPVTSTAIQMVFGDTVAIAMMGARNLTRDEYAANHP 199
             + +A +  +++ + V  E CP  LAP +ST   +V GD +AIA++ A+  TRD++A +HP
Sbjct:   131 STMARLAKIHLCIEVPEEACPLGLAPTSSTTATLVMGDAMAIALLQAKGFTRDDFAMSHP 190

Query:   200 AGRIGKSLIFKVQDVMKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFT 259
              G +G+ L+ KV +VM    +LP+ K    I D L E++ KG G   +IDE+  L+G FT
Sbjct:   191 GGALGRKLLLKVSNVMHCGDDLPLVKHDICITDALYEISKKGLGMTAIIDEQNKLVGIFT 250

Query:   260 DGDLRRTLKASGEGIFKLTVGEMCNRSPRTIGPDAMAVEAMQKMESPPSPVQFLPVINRQ 319
             DGDLRR + A    +    + ++  R+  TI  + +A +A+Q M+S    +  L VI+++
Sbjct:   251 DGDLRRVIDAQ-VNLRTTPIADVMTRNCVTITENVLAAQALQVMDS--RNINGLIVIDKE 307

Query:   320 NILIGIVTLHGLVSAGL 336
             N  +G + +  +V AG+
Sbjct:   308 NHPVGALNMLDMVKAGV 324

GO:0005975 "carbohydrate metabolic process" evidence=ISS

GO:0016853 "isomerase activity" evidence=ISS

UNIPROTKB|Q9KP53 VC_2523 "Arabinose 5-phosphate isomerase" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)]

 Score = 507 (183.5 bits), Expect = 1.4e-48, P = 1.4e-48
 Identities = 106/327 (32%), Positives = 179/327 (54%)

Query:    11 LPHKVSENTLLDLFKSQQDH-LNYFFQHLSLPHTLTFTQTLLKCRGTIFFTGVGKSGFVA 69
             +PH     T+     + + H L    Q+++          L    G +   G+GKSG + 
Sbjct:     3 MPHSFDYQTVAKQVLATEIHALQQLEQYINDDFARACAMILANQTGKVVVMGMGKSGHIG 62

Query:    70 NKISQTLISLGIKSGFLNPLDALHGDIGILSSDDILVMFSKSGNTEELLKVVPCAKAKGA 129
              KI+ TL S G  + F++P +A HGD+G++   DI++  S SG + E+L ++P  K    
Sbjct:    63 KKIAATLASTGTSAFFVHPGEASHGDLGMIERGDIVLAISNSGESSEILALLPVLKRLSI 122

Query:   130 YLVSVTSVEGNALAAVCDMNVHLPVERELCPFDLAPVTSTAIQMVFGDTVAIAMMGARNL 189
              ++S+T    + +A + D+++ + V RE CP +LAP +ST   +V GD +A+A+M AR  
Sbjct:   123 RVISMTGNPNSNMAKLADIHLQITVPREACPLELAPTSSTTATLVMGDALAVALMQARGF 182

Query:   190 TRDEYAANHPAGRIGKSLIFKVQDVMKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVID 249
             T +++A +HP G +G+ L+ K+ D+M     LP      LI D L+E++ KG G   ++D
Sbjct:   183 TAEDFALSHPGGALGRKLLLKLNDIMHSGDALPKVAPQALIRDALLEISQKGLGMTAIVD 242

Query:   250 EEYHLIGTFTDGDLRRTLKASGEGIFKLTVGEMCNRSPRTIGPDAMAVEAMQKMESPPSP 309
             E+  L+G FTDGDLRR L    + I    + ++  R P    P+ +AVE +  M++    
Sbjct:   243 EQDTLLGIFTDGDLRRILDKRID-IHSTVIADVMTRQPTVAQPNLLAVEGLNLMQA--KR 299

Query:   310 VQFLPVINRQNILIGIVTLHGLVSAGL 336
             +  L ++   N L+G + +H L+ AG+
Sbjct:   300 INGLMLVEN-NKLVGALNMHDLLKAGV 325

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|VC_2523 VC_2523 "conserved hypothetical protein" [Vibrio cholerae O1 biovar El Tor (taxid:686)]

 Score = 507 (183.5 bits), Expect = 1.4e-48, P = 1.4e-48
 Identities = 106/327 (32%), Positives = 179/327 (54%)

Query:    11 LPHKVSENTLLDLFKSQQDH-LNYFFQHLSLPHTLTFTQTLLKCRGTIFFTGVGKSGFVA 69
             +PH     T+     + + H L    Q+++          L    G +   G+GKSG + 
Sbjct:     3 MPHSFDYQTVAKQVLATEIHALQQLEQYINDDFARACAMILANQTGKVVVMGMGKSGHIG 62

Query:    70 NKISQTLISLGIKSGFLNPLDALHGDIGILSSDDILVMFSKSGNTEELLKVVPCAKAKGA 129
              KI+ TL S G  + F++P +A HGD+G++   DI++  S SG + E+L ++P  K    
Sbjct:    63 KKIAATLASTGTSAFFVHPGEASHGDLGMIERGDIVLAISNSGESSEILALLPVLKRLSI 122

Query:   130 YLVSVTSVEGNALAAVCDMNVHLPVERELCPFDLAPVTSTAIQMVFGDTVAIAMMGARNL 189
              ++S+T    + +A + D+++ + V RE CP +LAP +ST   +V GD +A+A+M AR  
Sbjct:   123 RVISMTGNPNSNMAKLADIHLQITVPREACPLELAPTSSTTATLVMGDALAVALMQARGF 182

Query:   190 TRDEYAANHPAGRIGKSLIFKVQDVMKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVID 249
             T +++A +HP G +G+ L+ K+ D+M     LP      LI D L+E++ KG G   ++D
Sbjct:   183 TAEDFALSHPGGALGRKLLLKLNDIMHSGDALPKVAPQALIRDALLEISQKGLGMTAIVD 242

Query:   250 EEYHLIGTFTDGDLRRTLKASGEGIFKLTVGEMCNRSPRTIGPDAMAVEAMQKMESPPSP 309
             E+  L+G FTDGDLRR L    + I    + ++  R P    P+ +AVE +  M++    
Sbjct:   243 EQDTLLGIFTDGDLRRILDKRID-IHSTVIADVMTRQPTVAQPNLLAVEGLNLMQA--KR 299

Query:   310 VQFLPVINRQNILIGIVTLHGLVSAGL 336
             +  L ++   N L+G + +H L+ AG+
Sbjct:   300 INGLMLVEN-NKLVGALNMHDLLKAGV 325

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|CJE_1617 CJE_1617 "arabinose-5-phosphate isomerase" [Campylobacter jejuni RM1221 (taxid:195099)]

 Score = 492 (178.3 bits), Expect = 5.4e-47, P = 5.4e-47
 Identities = 104/282 (36%), Positives = 169/282 (59%)

Query:    50 LLKCRGTIFFTGVGKSGFVANKISQTLISLGIKSGFLNPLDALHGDIGILSSDDILVMFS 109
             +L  +G    +G+GKSG +  KI+ TL S G  S F++P +ALHGD+G+L+ +D+L+  S
Sbjct:    36 MLNTKGRCIVSGMGKSGHIGAKIAATLASTGTPSFFIHPGEALHGDLGMLTPEDVLIAIS 95

Query:   110 KSGNTEELLKVVPCAKAKGAYLVSVTSVEGNALAAVCDMNVHLPVERELCPFDLAPVTST 169
              SG TEE+LK++P  K +   L+ +   + + L    D+ +++ VE+E CP  LAP++ST
Sbjct:    96 NSGETEEILKIIPAIKKRKIPLIVMCGKKNSTLVKQSDIFLNIAVEKEACPLQLAPMSST 155

Query:   170 AIQMVFGDTVAIAMMGARNLTRDEYAANHPAGRIGKSLIFKVQDVMKPQKELPVCKEGDL 229
                +V GD +A A+M  RN   D++A  HP G +G+ L+ KV+D+M     LP+    D 
Sbjct:   156 TATLVMGDALAAALMKVRNFKPDDFALFHPGGSLGRKLLTKVKDLMV-SSNLPIVHP-DT 213

Query:   230 IMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRRTLKASGEGIFKLTVGEMCNRSPRT 289
               + LV++ + G   L V+ E   L+G  TDGDLRR LK S +  F     E+ + +P+ 
Sbjct:   214 EFNDLVDVMTSGKLGLCVVLENEKLVGIITDGDLRRALKTSDKPRFDFRAKEIMSTNPKV 273

Query:   290 IGPDAMAVEAMQKMESPPSPVQFLPVINRQNILIGIVTLHGL 331
             +  DAMA EA + M      ++ + V++++N +IGI+ L+ +
Sbjct:   274 VDADAMASEAEEIMLK--HKIKEI-VVSKENKIIGIIQLYAI 312

GO:0000271 "polysaccharide biosynthetic process" evidence=ISS

GO:0019146 "arabinose-5-phosphate isomerase activity" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
O67500	Y1546_AQUAE	No assigned EC number	0.3896	0.8452	0.8819	yes	no
P45313	API_HAEIN	5, ., 3, ., 1, ., 1, 3	0.3610	0.8095	0.8071	yes	no
Q9PJZ7	Y679_CHLMU	No assigned EC number	0.3796	0.9523	0.9756	yes	no
O25971	Y1429_HELPY	No assigned EC number	0.3074	0.8244	0.8419	yes	no
O84404	Y399_CHLTR	No assigned EC number	0.3734	0.9523	0.9756	yes	no
Q5NGP7	KDSD_FRATT	5, ., 3, ., 1, ., 1, 3	0.3451	0.8244	0.8470	yes	no
Q9M1T1	SETH3_ARATH	5, ., 3, ., 1, ., 1, 3	0.7839	0.9642	0.9257	yes	no
Q47334	KPSF5_ECOLX	5, ., 3, ., 1, ., 1, 3	0.3678	0.8125	0.8348	yes	no
Q8ZLS1	KDSD_SALTY	5, ., 3, ., 1, ., 1, 3	0.3114	0.8809	0.9024	yes	no
Q8D1Q8	KDSD_YERPE	5, ., 3, ., 1, ., 1, 3	0.3183	0.8482	0.8689	yes	no
Q9ZJI5	YE29_HELPJ	No assigned EC number	0.3003	0.8244	0.8419	yes	no
Q83JF4	KDSD_SHIFL	5, ., 3, ., 1, ., 1, 3	0.3081	0.8809	0.9024	yes	no
Q8FDQ2	KPSF_ECOL6	5, ., 3, ., 1, ., 1, 3	0.375	0.8125	0.8348	yes	no
Q9HVW0	KDSD_PSEAE	5, ., 3, ., 1, ., 1, 3	0.3667	0.8511	0.8773	yes	no
Q9Z826	Y526_CHLPN	No assigned EC number	0.4043	0.9553	0.9756	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	5.3.1	LOW CONFIDENCE prediction!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	estExt_Genewise1_v1.C_LG_V1283	hypothetical protein (341 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	estExt_fgenesh4_pg.C_LG_V1151	3-deoxy-D-manno-oct-2-ulosonate-8-phosphate synthase (EC-2.5.1.55) (290 aa)	•		•			•	•		0.898
	estExt_fgenesh4_pg.C_LG_II0575	SubName- Full=Putative uncharacterized protein; (291 aa)	•		•			•	•		0.897
	eugene3.01070060	CMP-KDO synthetase (288 aa)	•		•				•		0.846
	fgenesh4_pg.C_LG_XI000980	CMP-KDO synthetase (293 aa)	•		•				•		0.844
	eugene3.00160899	hypothetical protein (446 aa)	•		•				•		0.791
	estExt_fgenesh4_pg.C_LG_VI0968	hypothetical protein (365 aa)	•		•				•		0.751
	gw1.X.6418.1	hypothetical protein (277 aa)	•		•				•		0.658
	gw1.IV.2364.1	hypothetical protein (234 aa)	•		•				•		0.609
	gw1.XIII.2878.1	hypothetical protein (392 aa)	•		•						0.524
	gw1.18032.1.1	Predicted protein (62 aa)			•						0.504

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	336
TIGR00393	268	TIGR00393, kpsF, KpsF/GutQ family protein	8e-64
PRK11543	321	PRK11543, gutQ, D-arabinose 5-phosphate isomerase;	1e-59
COG0794	202	COG0794, GutQ, Predicted sugar phosphate isomerase	5e-57
cd05014	128	cd05014, SIS_Kpsf, KpsF-like protein	2e-55
PRK10892	326	PRK10892, PRK10892, D-arabinose 5-phosphate isomer	2e-53
cd04604	114	cd04604, CBS_pair_KpsF_GutQ_assoc, This cd contain	5e-38
cd05013	139	cd05013, SIS_RpiR, RpiR-like protein	5e-19
pfam01380	131	pfam01380, SIS, SIS domain	5e-19
COG1737	281	COG1737, RpiR, Transcriptional regulators [Transcr	1e-16
cd02205	113	cd02205, CBS_pair, The CBS domain, named after hum	8e-16
cd04607	113	cd04607, CBS_pair_NTP_transferase_assoc, This cd c	2e-14
TIGR03127	179	TIGR03127, RuMP_HxlB, 6-phospho 3-hexuloisomerase	2e-12
COG0517	117	COG0517, COG0517, FOG: CBS domain [General functio	3e-12
cd05005	179	cd05005, SIS_PHI, Hexulose-6-phosphate isomerase (	1e-10
cd04622	113	cd04622, CBS_pair_9, The CBS domain, named after h	1e-10
COG2222	340	COG2222, AgaS, Predicted phosphosugar isomerases [	4e-10
cd04623	113	cd04623, CBS_pair_10, The CBS domain, named after	5e-10
cd04643	116	cd04643, CBS_pair_30, The CBS domain, named after	7e-09
cd04587	113	cd04587, CBS_pair_CAP-ED_DUF294_PBI_assoc, This cd	9e-09
cd05008	126	cd05008, SIS_GlmS_GlmD_1, SIS (Sugar ISomerase) do	9e-09
cd04800	111	cd04800, CBS_pair_CAP-ED_DUF294_PBI_assoc2, This c	1e-08
cd05006	177	cd05006, SIS_GmhA, Phosphoheptose isomerase is a m	4e-08
cd04613	114	cd04613, CBS_pair_SpoIVFB_EriC_assoc2, This cd con	2e-07
cd04802	112	cd04802, CBS_pair_3, The CBS domain, named after h	2e-07
PRK14101	638	PRK14101, PRK14101, bifunctional glucokinase/RpiR	6e-07
cd04593	115	cd04593, CBS_pair_EriC_assoc_bac_arch, This cd con	9e-07
pfam00571	57	pfam00571, CBS, CBS domain	2e-06
cd04795	87	cd04795, SIS, SIS domain	6e-06
cd05017	119	cd05017, SIS_PGI_PMI_1, The members of this protei	6e-06
cd04620	115	cd04620, CBS_pair_7, The CBS domain, named after h	9e-06
COG0279	176	COG0279, GmhA, Phosphoheptose isomerase [Carbohydr	2e-05
cd04612	111	cd04612, CBS_pair_SpoIVFB_EriC_assoc, This cd cont	2e-05
cd04585	122	cd04585, CBS_pair_ACT_assoc2, This cd contains two	2e-05
COG2905	610	COG2905, COG2905, Predicted signal-transduction pr	2e-05
cd05710	120	cd05710, SIS_1, A subgroup of the SIS domain	3e-05
pfam00571	57	pfam00571, CBS, CBS domain	4e-05
cd04606	109	cd04606, CBS_pair_Mg_transporter, This cd contains	4e-05
PRK11337	292	PRK11337, PRK11337, DNA-binding transcriptional re	5e-05
cd04583	109	cd04583, CBS_pair_ABC_OpuCA_assoc2, This cd contai	6e-05
cd04584	121	cd04584, CBS_pair_ACT_assoc, This cd contains two	9e-05
PRK11557	278	PRK11557, PRK11557, putative DNA-binding transcrip	1e-04
PRK14869	546	PRK14869, PRK14869, putative manganese-dependent i	4e-04
cd04629	114	cd04629, CBS_pair_16, The CBS domain, named after	6e-04
cd04615	113	cd04615, CBS_pair_2, The CBS domain, named after h	6e-04
TIGR00441	154	TIGR00441, gmhA, phosphoheptose isomerase	0.001
cd04636	132	cd04636, CBS_pair_23, The CBS domain, named after	0.001
COG4109	432	COG4109, COG4109, Predicted transcriptional regula	0.001
cd04583	109	cd04583, CBS_pair_ABC_OpuCA_assoc2, This cd contai	0.002
cd04642	126	cd04642, CBS_pair_29, The CBS domain, named after	0.002
PRK08674	337	PRK08674, PRK08674, bifunctional phosphoglucose/ph	0.002
PLN02981	680	PLN02981, PLN02981, glucosamine:fructose-6-phospha	0.002
cd04586	135	cd04586, CBS_pair_BON_assoc, This cd contains two	0.002
PRK13937	188	PRK13937, PRK13937, phosphoheptose isomerase; Prov	0.002
cd04801	114	cd04801, CBS_pair_M50_like, This cd contains two t	0.003
cd04605	110	cd04605, CBS_pair_MET2_assoc, This cd contains two	0.004

>gnl|CDD|129488 TIGR00393, kpsF, KpsF/GutQ family protein

 Score =  203 bits (517), Expect = 8e-64
 Identities = 99/272 (36%), Positives = 162/272 (59%), Gaps = 5/272 (1%)

Query: 55  GTIFFTGVGKSGFVANKISQTLISLGIKSGFLNPLDALHGDIGILSSDDILVMFSKSGNT 114
           G +   G+GKSG +  KI  T  S G  S FL+P +A+HGD+G++  +D+++M S SG +
Sbjct: 1   GKLVIVGIGKSGLIGKKIVATFASTGTPSFFLHPTEAMHGDLGMVEPNDVVLMISYSGES 60

Query: 115 EELLKVVPCAKAKGAYLVSVTSVEGNALAAVCDMNVHLPVERELCPFDLAPVTSTAIQMV 174
            ELL ++P  K     +++ T    ++LA   D  + + VE+E CP +LAP TST + + 
Sbjct: 61  LELLNLIPHLKRLSHKIIAFTGSPNSSLARAADYVLDIKVEKEACPINLAPTTSTTLTLA 120

Query: 175 FGDTVAIAMMGARNLTRDEYAANHPAGRIGKSLIFKVQDVMKPQKELPVCKEGDLIMDQL 234
            GD +A+A+M ARN +++++A+ HP G +G+ L+ KV+D+M+   +LP+        D L
Sbjct: 121 LGDALAVALMRARNFSQEDFASFHPGGALGRKLLVKVKDLMQ-TTDLPLIAPTTSFKDAL 179

Query: 235 VELTSKGCGCLLVIDEEYHLIGTFTDGDLRRTLKASGEGIFKLTVGEMCNRSPRTIGPDA 294
           +E++ K  G  +V DE   L+G FTDGDLRR L   G G  K  V +     P+T   DA
Sbjct: 180 LEMSEKRLGSAIVCDENNQLVGVFTDGDLRRAL--LGGGSLKSEVRDFMTLGPKTFKLDA 237

Query: 295 MAVEAMQKMESPPSPVQFLPVINRQNILIGIV 326
           + +EA++ +E     +  L V++  N ++G++
Sbjct: 238 LLLEALEFLER--RKITSLVVVDDHNKVLGVL 267

This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli [Energy metabolism, Sugars]. Length = 268

>gnl|CDD|183186 PRK11543, gutQ, D-arabinose 5-phosphate isomerase; Provisional

 Score =  193 bits (493), Expect = 1e-59
 Identities = 98/291 (33%), Positives = 157/291 (53%), Gaps = 8/291 (2%)

Query: 48  QTLLKCRGTIFFTGVGKSGFVANKISQTLISLGIKSGFLNPLDALHGDIGILSSDDILVM 107
             +L C G +  +G+GKSG +  KI+ TL S G  + F++P +ALHGD+G++ S D+++ 
Sbjct: 36  NIILHCEGKVVVSGIGKSGHIGKKIAATLASTGTPAFFVHPAEALHGDLGMIESRDVMLF 95

Query: 108 FSKSGNTEELLKVVPCAKAKGAYLVSVT--SVEGNALAAVCDMNVHLPVERELCPFDLAP 165
            S SG  +EL  ++P  + K   L+++T        LAA   +++   VERE CP  LAP
Sbjct: 96  ISYSGGAKELDLIIPRLEDKSIALLAMTGKPTSPLGLAAKAVLDI--SVEREACPMHLAP 153

Query: 166 VTSTAIQMVFGDTVAIAMMGARNLTRDEYAANHPAGRIGKSLIFKVQDVMKPQKELPVCK 225
            +ST   ++ GD +A+A+M AR    +++A +HPAG +G  L+ KV  +M+    +P   
Sbjct: 154 TSSTVNTLMMGDALAMAVMQARGFNEEDFARSHPAGALGARLLNKVHHLMRRDDAIPQVA 213

Query: 226 EGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRRTLKASGEGIFKLTVGEMCNR 285
               +MD ++EL+  G G + V D +  + G FTDGDLRR L   G G     V E   R
Sbjct: 214 LTASVMDAMLELSRTGLGLVAVCDAQQQVQGVFTDGDLRRWL--VGGGALTTPVNEAMTR 271

Query: 286 SPRTIGPDAMAVEAMQKMESPPSPVQFLPVINRQNILIGIVTLHGLVSAGL 336
              T+   + A++A + +      +   PV++    L G + L     AG+
Sbjct: 272 GGTTLQAQSRAIDAKEILMK--RKITAAPVVDENGKLTGAINLQDFYQAGI 320

Length = 321

>gnl|CDD|223865 COG0794, GutQ, Predicted sugar phosphate isomerase involved in capsule formation [Cell envelope biogenesis, outer membrane]

 Score =  183 bits (466), Expect = 5e-57
 Identities = 70/196 (35%), Positives = 116/196 (59%)

Query: 22  DLFKSQQDHLNYFFQHLSLPHTLTFTQTLLKCRGTIFFTGVGKSGFVANKISQTLISLGI 81
           ++  ++ + L    + L     +   + +L+C+G +F TGVGKSG +  K +  L S G 
Sbjct: 7   EILMTEAEALLELAERLDDEDFVRAVELILECKGKVFVTGVGKSGLIGKKFAARLASTGT 66

Query: 82  KSGFLNPLDALHGDIGILSSDDILVMFSKSGNTEELLKVVPCAKAKGAYLVSVTSVEGNA 141
            + F+ P +ALHGD+G+++  D+++  S SG T+ELL + P AK  GA L+++TS   ++
Sbjct: 67  PAFFVGPAEALHGDLGMITPGDVVIAISGSGETKELLNLAPKAKRLGAKLIAITSNPDSS 126

Query: 142 LAAVCDMNVHLPVERELCPFDLAPVTSTAIQMVFGDTVAIAMMGARNLTRDEYAANHPAG 201
           LA   D+ + +PV+ E CP  LAP TST + +  GD +A  +  AR  + +++A  HP G
Sbjct: 127 LAKAADVVLVIPVKTEACPLGLAPTTSTTLTLALGDALAGTLFEARGFSFEDFAIAHPGG 186

Query: 202 RIGKSLIFKVQDVMKP 217
            +G  L+ KV+D M  
Sbjct: 187 ALGAKLLLKVKDHMNL 202

Length = 202

>gnl|CDD|240145 cd05014, SIS_Kpsf, KpsF-like protein

 Score =  176 bits (449), Expect = 2e-55
 Identities = 57/128 (44%), Positives = 85/128 (66%)

Query: 55  GTIFFTGVGKSGFVANKISQTLISLGIKSGFLNPLDALHGDIGILSSDDILVMFSKSGNT 114
           G +  TGVGKSG +A KI+ TL S G  + FL+P +ALHGD+G+++  D+++  S SG T
Sbjct: 1   GKVVVTGVGKSGHIARKIAATLSSTGTPAFFLHPTEALHGDLGMVTPGDVVIAISNSGET 60

Query: 115 EELLKVVPCAKAKGAYLVSVTSVEGNALAAVCDMNVHLPVERELCPFDLAPVTSTAIQMV 174
           +ELL ++P  K +GA ++++T    + LA + D+ + LPVE E CP  LAP TST   + 
Sbjct: 61  DELLNLLPHLKRRGAPIIAITGNPNSTLAKLSDVVLDLPVEEEACPLGLAPTTSTTAMLA 120

Query: 175 FGDTVAIA 182
            GD +A+A
Sbjct: 121 LGDALAVA 128

KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway. Length = 128

>gnl|CDD|182814 PRK10892, PRK10892, D-arabinose 5-phosphate isomerase; Provisional

 Score =  177 bits (451), Expect = 2e-53
 Identities = 91/294 (30%), Positives = 167/294 (56%), Gaps = 7/294 (2%)

Query: 46  FTQT---LLKCRGTIFFTGVGKSGFVANKISQTLISLGIKSGFLNPLDALHGDIGILSSD 102
           FT     +  C+G +   G+GKSG +  K++ T  S G  S F++P +A HGD+G+++  
Sbjct: 36  FTLACEKMFWCKGKVVVMGMGKSGHIGRKMAATFASTGTPSFFVHPGEAAHGDLGMVTPQ 95

Query: 103 DILVMFSKSGNTEELLKVVPCAKAKGAYLVSVTSVEGNALAAVCDMNVHLPVERELCPFD 162
           D+++  S SG + E+L ++P  K     L+ +T    +++A   D+++ + V +E CP  
Sbjct: 96  DVVIAISNSGESSEILALIPVLKRLHVPLICITGRPESSMARAADIHLCVKVPKEACPLG 155

Query: 163 LAPVTSTAIQMVFGDTVAIAMMGARNLTRDEYAANHPAGRIGKSLIFKVQDVMKPQKELP 222
           LAP +ST   +V GD +A+A++ AR  T +++A +HP G +G+ L+ +V D+M    E+P
Sbjct: 156 LAPTSSTTATLVMGDALAVALLKARGFTAEDFALSHPGGALGRKLLLRVSDIMHTGDEIP 215

Query: 223 VCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRRTLKASGEGIFKLTVGEM 282
              +   + D L+E+T K  G  ++ D+   + G FTDGDLRR     G  + + ++ ++
Sbjct: 216 HVSKTASLRDALLEITRKNLGMTVICDDNMKIEGIFTDGDLRRVFDM-GIDLRQASIADV 274

Query: 283 CNRSPRTIGPDAMAVEAMQKMESPPSPVQFLPVINRQNILIGIVTLHGLVSAGL 336
                  + P  +AV+A+  M+S    +  + V +  + L+G++ +H L+ AG+
Sbjct: 275 MTPGGIRVRPGILAVDALNLMQS--RHITSVLVAD-GDHLLGVLHMHDLLRAGV 325

Length = 326

>gnl|CDD|239977 cd04604, CBS_pair_KpsF_GutQ_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with KpsF/GutQ domains in the API [A5P (D-arabinose 5-phosphate) isomerase] protein

 Score =  131 bits (331), Expect = 5e-38
 Identities = 45/115 (39%), Positives = 70/115 (60%), Gaps = 3/115 (2%)

Query: 220 ELPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRRTLKASGEGIFKLTV 279
            LP+      + D L+E++ KG G   V+DE+  L+G FTDGDLRR L+  G  I  L V
Sbjct: 3   ALPLVSPDTSLKDALLEMSRKGLGMTAVVDEDGRLVGIFTDGDLRRALEK-GLDILTLPV 61

Query: 280 GEMCNRSPRTIGPDAMAVEAMQKMESPPSPVQFLPVINRQNILIGIVTLHGLVSA 334
            ++  R+P+TI PDA+A EA++ ME   + +  LPV++     +G++ +H L+ A
Sbjct: 62  ADVMTRNPKTIDPDALAAEALELMEE--NKITALPVVDDNGRPVGVLHIHDLLRA 114

These APIs catalyze the conversion of the pentose pathway intermediate D-ribulose 5-phosphate into A5P, a precursor of 3-deoxy-D-manno-octulosonate, which is an integral carbohydrate component of various glycolipids coating the surface of the outer membrane of Gram-negative bacteria, including lipopolysaccharide and many group 2 K-antigen capsules. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 114

>gnl|CDD|240144 cd05013, SIS_RpiR, RpiR-like protein

 Score = 81.9 bits (203), Expect = 5e-19
 Identities = 37/133 (27%), Positives = 62/133 (46%), Gaps = 2/133 (1%)

Query: 50  LLKCRGTIFFTGVGKSGFVANKISQTLISLGIKSGFLNPLDALHGDIGILSSDDILVMFS 109
           LL     I+  GVG SG VA  ++  L+ LG     L+           L+  D+++  S
Sbjct: 9   LLAKARRIYIFGVGSSGLVAEYLAYKLLRLGKPVVLLSDPHLQLMSAANLTPGDVVIAIS 68

Query: 110 KSGNTEELLKVVPCAKAKGAYLVSVTSVEGNALAAVCDMNVHLPVERELCPFDLAPVTST 169
            SG T+E ++    AK +GA ++++T    + LA + D  + L V  E   F  +  +S 
Sbjct: 69  FSGETKETVEAAEIAKERGAKVIAITDSANSPLAKLAD--IVLLVSSEEGDFRSSAFSSR 126

Query: 170 AIQMVFGDTVAIA 182
             Q+   D + +A
Sbjct: 127 IAQLALIDALFLA 139

RpiR contains a SIS (Sugar ISomerase) domain, which is found in many phosphosugar isomerases and phosphosugar binding proteins. In E. coli, rpiR negatively regulates the expression of rpiB gene. Both rpiB and rpiA are ribose phosphate isomerases that catalyze the reversible reactions of ribose 5-phosphate into ribulose 5-phosphate. Length = 139

>gnl|CDD|216466 pfam01380, SIS, SIS domain

 Score = 81.6 bits (202), Expect = 5e-19
 Identities = 35/134 (26%), Positives = 64/134 (47%), Gaps = 4/134 (2%)

Query: 50  LLKCRGTIFFTGVGKSGFVANKISQTLISLGIKSGFLNPLDAL-HGDIGILSSDDILVMF 108
            L     I+  G G S   A +++  L  +G     +       HG + ++  DD+++  
Sbjct: 1   KLAKAKRIYVIGAGTSYAAALELALKLEEIGYIVVEVEDASEFRHGPLALVDPDDLVIAI 60

Query: 109 SKSGNTEELLKVVPCAKAKGAYLVSVTSVEGNALAAVCDMNVHLPVERELCPFDLAPVTS 168
           S+SG T +LL+     KA+GA ++++T  +G+ LA   D  +++    E     +A   S
Sbjct: 61  SQSGETRDLLEAAKLLKARGAKIIAITDSKGSPLAREADHVLYIIAGPEAG---VASTKS 117

Query: 169 TAIQMVFGDTVAIA 182
             +Q+   D +AIA
Sbjct: 118 LTLQLALLDALAIA 131

SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars. Presumably the SIS domains bind to the end-product of the pathway. Length = 131

>gnl|CDD|224651 COG1737, RpiR, Transcriptional regulators [Transcription]

 Score = 78.5 bits (194), Expect = 1e-16
 Identities = 40/149 (26%), Positives = 74/149 (49%), Gaps = 7/149 (4%)

Query: 49  TLLKCRGTIFFTGVGKSGFVANKISQTLISLGIKSGFLNPLDALHGDIGILSSDDILVMF 108
            LL     I+F G+G SG VA+ ++  L+ +G+    L+        + +L+  D+++  
Sbjct: 125 ELLAKARRIYFFGLGSSGLVASDLAYKLMRIGLNVVALSDTHGQLMQLALLTPGDVVIAI 184

Query: 109 SKSGNTEELLKVVPCAKAKGAYLVSVTSVEGNALAAVCDMNVHLPVERELCPFDLAPVTS 168
           S SG T E+++    AK +GA ++++T    + LA + D+ + +PV  E   F  +P++S
Sbjct: 185 SFSGYTREIVEAAELAKERGAKVIAITDSADSPLAKLADIVLLVPVAEE--SFFRSPISS 242

Query: 169 TAIQMVFGDTVAIAMMGARNLTRDEYAAN 197
              Q+   D +  A+       R   AA 
Sbjct: 243 RIAQLALIDALITAV-----AQRRGEAAL 266

Length = 281

>gnl|CDD|239067 cd02205, CBS_pair, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 72.1 bits (177), Expect = 8e-16
 Identities = 34/116 (29%), Positives = 58/116 (50%), Gaps = 3/116 (2%)

Query: 219 KELPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRRTLKASGEGIFKLT 278
           +++      D + + L  +   G   L V+D++  L+G  T+ DL R L A G     +T
Sbjct: 1   RDVVTVSPDDTVAEALRLMLEHGISGLPVVDDDGRLVGIVTERDLLRAL-AEGGLDPLVT 59

Query: 279 VGEMCNRSPRTIGPDAMAVEAMQKMESPPSPVQFLPVINRQNILIGIVTLHGLVSA 334
           VG++  R   T+ PD    EA + M      ++ LPV++ +  L+GIVT   ++ A
Sbjct: 60  VGDVMTRDVVTVSPDTSLEEAAELMLE--HGIRRLPVVDDEGRLVGIVTRSDILRA 113

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 113

>gnl|CDD|239980 cd04607, CBS_pair_NTP_transferase_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain associated with the NTP (Nucleotidyl transferase) domain downstream

 Score = 68.7 bits (169), Expect = 2e-14
 Identities = 33/111 (29%), Positives = 55/111 (49%), Gaps = 4/111 (3%)

Query: 223 VCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRRTLKASGEGIFKLTVGEM 282
           +      I+D L ++       +LV+DE   L+GT TDGD+RR L   G       V E+
Sbjct: 6   LVSPDASILDALRKIDKNALRIVLVVDENGRLLGTVTDGDIRRAL-LKGLS-LDDPVSEV 63

Query: 283 CNRSPRTIGPDAMAVEAMQKMESPPSPVQFLPVINRQNILIGIVTLHGLVS 333
            NR+P T    +   E +  M      ++ LP+++ +  ++G+ TL  L+S
Sbjct: 64  MNRNPITAKVGSSREEILALMRE--RSIRHLPILDEEGRVVGLATLDDLLS 112

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 113

>gnl|CDD|132171 TIGR03127, RuMP_HxlB, 6-phospho 3-hexuloisomerase

 Score = 64.6 bits (158), Expect = 2e-12
 Identities = 40/150 (26%), Positives = 65/150 (43%), Gaps = 15/150 (10%)

Query: 57  IFFTGVGKSGFVANKISQTLISLGIKSGFLNPLDALHGDIGI--LSSDDILVMFSKSGNT 114
           IF  G G+SG V    +  L+ LG     +       G+     +   D+L+  S SG T
Sbjct: 33  IFVAGAGRSGLVGKAFAMRLMHLGFNVYVV-------GETTTPSIKKGDLLIAISGSGET 85

Query: 115 EELLKVVPCAKAKGAYLVSVTSVEGNALAAVCDMNVHLPVER----ELCPFDLAPVTSTA 170
           E L+ V   AK  GA + ++T+   + L  + D+ V +P       E     + P+ S  
Sbjct: 86  ESLVTVAKKAKEIGATVAAITTNPESTLGKLADVVVEIPAATKKDSEGNYKSIQPLGSLF 145

Query: 171 IQ--MVFGDTVAIAMMGARNLTRDEYAANH 198
            Q  ++F D V + +M  + L  +E    H
Sbjct: 146 EQSLLLFLDAVILKLMKKKGLDEEEMKKRH 175

Members of this protein family are 6-phospho 3-hexuloisomerase (PHI), or the PHI domain of a fusion protein. This enzyme is part of the ribulose monophosphate (RuMP) pathway, which in one direction removes the toxic metabolite formaldehyde by assimilation into fructose-6-phosphate. In the other direction, in species lacking a complete pentose phosphate pathway, the RuMP pathway yields ribulose-5-phosphate, necessary for nucleotide biosynthesis, at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. Length = 179

>gnl|CDD|223591 COG0517, COG0517, FOG: CBS domain [General function prediction only]

 Score = 62.5 bits (152), Expect = 3e-12
 Identities = 35/123 (28%), Positives = 63/123 (51%), Gaps = 7/123 (5%)

Query: 211 VQDVMKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRRTLKAS 270
           V+D+M   K++   K    + D L+ ++  G   + V+D+   L+G  T+ D+ R L A 
Sbjct: 1   VKDIMT--KDVITVKPDTSVRDALLLMSENGVSAVPVVDDG-KLVGIITERDILRALAAG 57

Query: 271 GEGIFKLTVGEMCNRSPRTIGPDAMAVEAMQKMESPPSPVQFLPVINRQNI-LIGIVTLH 329
           G+    L V E+  +   T+ PD    EA++ M      ++ LPV++     L+GI+TL 
Sbjct: 58  GKR--LLPVKEVMTKPVVTVDPDTPLEEALELMVERHK-IRRLPVVDDDGGKLVGIITLS 114

Query: 330 GLV 332
            ++
Sbjct: 115 DIL 117

Length = 117

>gnl|CDD|240138 cd05005, SIS_PHI, Hexulose-6-phosphate isomerase (PHI)

 Score = 59.5 bits (145), Expect = 1e-10
 Identities = 40/155 (25%), Positives = 64/155 (41%), Gaps = 25/155 (16%)

Query: 57  IFFTGVGKSGFVANKISQTLISLGIKSGFLNPLDALHGDIGI---LSSDDILVMFSKSGN 113
           IF  G G+SG VA   +  L+ LG+    +       G+      +   D+L+  S SG 
Sbjct: 36  IFVYGAGRSGLVAKAFAMRLMHLGLNVYVV-------GET-TTPAIGPGDLLIAISGSGE 87

Query: 114 TEELLKVVPCAKAKGAYLVSVTSVEGNALAAVCDMNVHLPVERELCPFDLAPVTSTAIQ- 172
           T  ++     AK  GA +V +TS   + LA + D+ V +P   +    D       +IQ 
Sbjct: 88  TSSVVNAAEKAKKAGAKVVLITSNPDSPLAKLADVVVVIPAATK----DDHGGEHKSIQP 143

Query: 173 ---------MVFGDTVAIAMMGARNLTRDEYAANH 198
                    +VF D V   +M    ++ +E    H
Sbjct: 144 LGTLFEQSALVFLDAVIAKLMEELGVSEEEMKKRH 178

PHI is a member of the SIS (Sugar ISomerase domain) superfamily. In the ribulose monophosphate pathway of formaldehyde fixation, hexulose-6-phosphate synthase catalyzes the condensation of ribulose-5-phosphate with formadelhyde to become hexulose-6-phosphate, which is then isomerized to fructose-6-phosphate by PHI. Length = 179

>gnl|CDD|239994 cd04622, CBS_pair_9, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 57.5 bits (140), Expect = 1e-10
 Identities = 28/90 (31%), Positives = 43/90 (47%), Gaps = 7/90 (7%)

Query: 241 GCGCLLVIDEEYHLIGTFTDGDLRRTLK--ASGEGIFKLTVGEMCNRSPRTIGPDAMAVE 298
             G L V + +  L+G  TD D+   ++  A G      TVG++  R   T+  D    E
Sbjct: 23  DVGALPVCEND-RLVGIVTDRDI--VVRAVAEGRDPDTTTVGDVMTRGVVTVTEDDDVDE 79

Query: 299 AMQKMESPPSPVQFLPVINRQNILIGIVTL 328
           A + M      V+ LPV++    L+GIV+L
Sbjct: 80  AARLMRE--HQVRRLPVVDDDGRLVGIVSL 107

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 113

>gnl|CDD|225132 COG2222, AgaS, Predicted phosphosugar isomerases [Cell envelope biogenesis, outer membrane]

 Score = 60.0 bits (146), Expect = 4e-10
 Identities = 29/102 (28%), Positives = 43/102 (42%), Gaps = 1/102 (0%)

Query: 57  IFFTGVGKSGFVANKISQTL-ISLGIKSGFLNPLDALHGDIGILSSDDILVMFSKSGNTE 115
           I F G G S   A      L   LG+    +   + L      L  D +++ FS+SGNT 
Sbjct: 42  ILFVGCGSSLHAATPAKYLLERELGLLVAAIPASEFLTNGAKYLGEDSLVIAFSQSGNTP 101

Query: 116 ELLKVVPCAKAKGAYLVSVTSVEGNALAAVCDMNVHLPVERE 157
           E +     AK  GA  +++T+ E + LA   D  +      E
Sbjct: 102 ESVAAAELAKEGGALTIALTNEEDSPLARAADYVIPYLAGEE 143

Length = 340

>gnl|CDD|239995 cd04623, CBS_pair_10, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 56.0 bits (136), Expect = 5e-10
 Identities = 31/115 (26%), Positives = 53/115 (46%), Gaps = 9/115 (7%)

Query: 223 VCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRRTLKASGEGIFKLTVGEM 282
             +    + +    +  K  G ++V+D+   L+G F++ D+ R +   G       V E+
Sbjct: 5   TVRPDATVAEAAKLMAEKNIGAVVVVDDGGRLVGIFSERDIVRKVALRGASALDTPVSEI 64

Query: 283 CNRSPRTIGPDAMAVEAMQKM-ESPPSPVQF--LPVINRQNILIGIVTLHGLVSA 334
             R+  T+ PD    EAM  M E      +F  LPV+     L+GIV++  +V A
Sbjct: 65  MTRNVITVTPDDTVDEAMALMTER-----RFRHLPVV-DGGKLVGIVSIGDVVKA 113

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 113

>gnl|CDD|240014 cd04643, CBS_pair_30, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 53.0 bits (128), Expect = 7e-09
 Identities = 29/102 (28%), Positives = 45/102 (44%), Gaps = 9/102 (8%)

Query: 231 MDQLVE-LTSKGCGCLLVIDEEYHLIGTFTDGDLRRTLKASG----EGIFKLTVGEMCNR 285
           +   +  LT  G   + V+D+E   +GT +  D+   LK       E +  L V ++ N 
Sbjct: 12  LRHALLVLTKHGYSAIPVLDKEGKYVGTISLTDILWKLKGLENLDLERLVDLKVIDVMNT 71

Query: 286 SPRTIGPDAMAVEAMQKMESPPSPVQFLPVINRQNILIGIVT 327
               I  DA   E +  +   P    FLPV++   I IGI+T
Sbjct: 72  DVPVIIDDADIEEILHLLIDQP----FLPVVDDDGIFIGIIT 109

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 116

>gnl|CDD|239960 cd04587, CBS_pair_CAP-ED_DUF294_PBI_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain

 Score = 52.2 bits (126), Expect = 9e-09
 Identities = 26/117 (22%), Positives = 46/117 (39%), Gaps = 11/117 (9%)

Query: 222 PVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRRTLKASGEGIFKLTVGE 281
                   + +    +  K   C+LV+D    L+G FT  D+   + A G       V  
Sbjct: 4   ATVSPTTTVQEAAKLMREKRVSCVLVMDGN-KLVGIFTSKDIALRVVAQGLDPESTLVER 62

Query: 282 MCNRSPRTIGPDAMAVEAMQKMESPPSPVQF----LPVINRQNILIGIVTLHGLVSA 334
           +   +P     D   +EA+  M      VQ     LPV+++   ++G++ +  L  A
Sbjct: 63  VMTPNPVCATSDTPVLEALHLM------VQGKFRHLPVVDKSGQVVGLLDVTKLTHA 113

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 113

>gnl|CDD|240141 cd05008, SIS_GlmS_GlmD_1, SIS (Sugar ISomerase) domain repeat 1 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD)

 Score = 52.9 bits (128), Expect = 9e-09
 Identities = 21/60 (35%), Positives = 34/60 (56%)

Query: 98  ILSSDDILVMFSKSGNTEELLKVVPCAKAKGAYLVSVTSVEGNALAAVCDMNVHLPVERE 157
           +L  D +++  S+SG T + L  +  AK KGA  V++T+V G+ LA   D  ++L    E
Sbjct: 43  LLDEDTLVIAISQSGETADTLAALRLAKEKGAKTVAITNVVGSTLAREADYVLYLRAGPE 102

The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) contains two SIS domains and catalyzes the deamination and isomerization of glucosamine-6-phosphate into fructose-6-phosphate with the release of ammonia; in presence of high ammonia concentration, GlmD can catalyze the reverse reaction. Length = 126

>gnl|CDD|240113 cd04800, CBS_pair_CAP-ED_DUF294_PBI_assoc2, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain

 Score = 51.7 bits (125), Expect = 1e-08
 Identities = 33/116 (28%), Positives = 50/116 (43%), Gaps = 5/116 (4%)

Query: 219 KELPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRRTLKASGEGIFKLT 278
           +    C     I +    +T      LLV+D+   L+G  TD DLR  + A G       
Sbjct: 1   RPPVTCSPDTTIREAARLMTEHRVSSLLVVDDG-RLVGIVTDRDLRNRVVAEGLDPD-TP 58

Query: 279 VGEMCNRSPRTIGPDAMAVEAMQKMESPPSPVQFLPVINRQNILIGIVTLHGLVSA 334
           V E+    P TI PDA   EA+  M      +  LPV++    L+G+++   L+  
Sbjct: 59  VSEVMTAPPITIPPDATVFEALLLMLE--RGIHHLPVVDDGR-LVGVISATDLLRL 111

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 111

>gnl|CDD|240139 cd05006, SIS_GmhA, Phosphoheptose isomerase is a member of the SIS (Sugar ISomerase) superfamily

 Score = 52.1 bits (126), Expect = 4e-08
 Identities = 32/124 (25%), Positives = 50/124 (40%), Gaps = 21/124 (16%)

Query: 51  LKCRGTIFFTGVGKSGFVANKISQTLISLGIKSGFLNPLDALHGDIGILSS--------- 101
           L   G I   G G S   A   +  L+    K     P  AL  D  IL++         
Sbjct: 30  LLNGGKILICGNGGSAADAQHFAAELVKRFEKERPGLPAIALTTDTSILTAIANDYGYEE 89

Query: 102 ------------DDILVMFSKSGNTEELLKVVPCAKAKGAYLVSVTSVEGNALAAVCDMN 149
                        D+L+  S SGN+  +LK +  AK +G   +++T  +G  L  + D+ 
Sbjct: 90  VFSRQVEALGQPGDVLIGISTSGNSPNVLKALEAAKERGMKTIALTGRDGGKLLELADIE 149

Query: 150 VHLP 153
           +H+P
Sbjct: 150 IHVP 153

Phosphoheptose isomerase catalyzes the isomerization of sedoheptulose 7-phosphate into D-glycero-D-mannoheptose 7-phosphate. This is the first step of the biosynthesis of gram-negative bacteria inner core lipopolysaccharide precursor, L-glycero-D-mannoheptose (Gmh). Length = 177

>gnl|CDD|239986 cd04613, CBS_pair_SpoIVFB_EriC_assoc2, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC

 Score = 48.7 bits (117), Expect = 2e-07
 Identities = 22/95 (23%), Positives = 45/95 (47%), Gaps = 8/95 (8%)

Query: 243 GCLLVIDEEYHLIGTFTDGDLRRTLKASGEGIF--KLTVGEMCNRSPRTIGPDAMAVEAM 300
               V+D++  L+G  +  D+R  L    +      +   ++  + P  + P+    +A+
Sbjct: 25  NNFPVVDDDGRLVGIVSLDDIREILF---DPSLYDLVVASDIMTKPPVVVYPEDSLEDAL 81

Query: 301 QKMESPPSPVQFLPVI-NRQNILIGIVTLHGLVSA 334
           +K E   S  + LPV+ +    L+GI++   L+SA
Sbjct: 82  KKFED--SDYEQLPVVDDDPGKLLGILSRSDLLSA 114

SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 114

>gnl|CDD|240115 cd04802, CBS_pair_3, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 48.9 bits (117), Expect = 2e-07
 Identities = 28/92 (30%), Positives = 47/92 (51%), Gaps = 4/92 (4%)

Query: 236 ELTSKGCGCLLVIDEEYHLIGTFTDGDLRRTLKASGEGIFKLTVGEMCNRSPRTIGPDAM 295
            +T    G L+V+D E   +G  T+ DL + + +      ++ VGE+ +    TI P+A 
Sbjct: 18  IMTENNIGRLIVVDNE-KPVGIITERDLVKKVVSRNLKPREVPVGEVMSTPLITIDPNAS 76

Query: 296 AVEAMQKMESPPSPVQFLPVINRQNILIGIVT 327
             EA + M      ++ LPV+   + L+GIVT
Sbjct: 77  LNEAAKLMAK--HGIKRLPVV-DDDELVGIVT 105

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 112

>gnl|CDD|184507 PRK14101, PRK14101, bifunctional glucokinase/RpiR family transcriptional regulator; Provisional

 Score = 50.7 bits (121), Expect = 6e-07
 Identities = 48/185 (25%), Positives = 74/185 (40%), Gaps = 16/185 (8%)

Query: 14  KVSENTLLDLFKSQQDHLNYFFQHLSLPHTLTFTQT--LLKCRGTIFFTGVGKSGFVANK 71
           KV +NT+  + +  ++HLN  F+H          Q   +L     I F G+G S  VA  
Sbjct: 437 KVLDNTVSAILQ-LREHLN--FEH--------VEQAIDILNNARRIEFYGLGNSNIVAQD 485

Query: 72  ISQTLISLGIKSGFLNPLDALHGDIGILSSDDILVMFSKSGNTEELLKVVPCAKAKGAYL 131
                   GI +     L        +L   D++V  SKSG   ELL+V+  A   GA +
Sbjct: 486 AHYKFFRFGIPTIAYGDLYMQAASAALLGKGDVIVAVSKSGRAPELLRVLDVAMQAGAKV 545

Query: 132 VSVTSVEGNALAAVCDMNVHLPVERELCPFDLAPVTSTAIQMVFGDTVAIAMMGARNLTR 191
           +++TS     LA      V L  +          + S  + +V  D +A+ +   R    
Sbjct: 546 IAITS-SNTPLAKRAT--VALETDHIEMRESQLSMISRILHLVMIDILAVGVAIRRAAPN 602

Query: 192 DEYAA 196
            E A 
Sbjct: 603 AELAE 607

Length = 638

>gnl|CDD|239966 cd04593, CBS_pair_EriC_assoc_bac_arch, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in bacteria and archaea

 Score = 46.6 bits (111), Expect = 9e-07
 Identities = 30/115 (26%), Positives = 52/115 (45%), Gaps = 5/115 (4%)

Query: 222 PVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRRTLKASGEGIFKLTVGE 281
           PV      + +   +L     G  LV+D +  ++G  T  DL R L  + E      V E
Sbjct: 4   PVLSATTPLREAAEQLIESKHGSALVVDRDGGVVGIITLPDLLRAL-EADEAGEPSAVDE 62

Query: 282 MCNRSPRTIGPDAMAVEAMQKMESPPSPVQFLPVINRQNI--LIGIVTLHGLVSA 334
           +      T+ PD     A+ +M S    ++ LPV++R N   ++G++T   ++ A
Sbjct: 63  VATPPLLTVHPDEPLAHALDRMAS--RGLRQLPVVDRGNPGQVLGLLTRENVLLA 115

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in CLC chloride channel family members have been associated with classic Bartter syndrome, Osteopetrosis, Dent's disease, idiopathic generalized epilepsy, and myotonia. Length = 115

>gnl|CDD|201313 pfam00571, CBS, CBS domain

 Score = 44.1 bits (105), Expect = 2e-06
 Identities = 18/56 (32%), Positives = 29/56 (51%), Gaps = 2/56 (3%)

Query: 279 VGEMCNRSPRTIGPDAMAVEAMQKMESPPSPVQFLPVINRQNILIGIVTLHGLVSA 334
           V ++      T+ PD    EA++ M    + +  LPV++    L+GIVTL  L+ A
Sbjct: 1   VKDIMTPDVVTVPPDTSLEEALELMRE--NGISRLPVVDEDGKLVGIVTLRDLLRA 54

CBS domains are small intracellular modules that pair together to form a stable globular domain. This family represents a single CBS domain. Pairs of these domains have been termed a Bateman domain. CBS domains have been shown to bind ligands with an adenosyl group such as AMP, ATP and S-AdoMet. CBS domains are found attached to a wide range of other protein domains suggesting that CBS domains may play a regulatory role making proteins sensitive to adenosyl carrying ligands. The region containing the CBS domains in Cystathionine-beta synthase is involved in regulation by S-AdoMet. CBS domain pairs from AMPK bind AMP or ATP. The CBS domains from IMPDH and the chloride channel CLC2 bind ATP. Length = 57

>gnl|CDD|240112 cd04795, SIS, SIS domain

 Score = 43.5 bits (103), Expect = 6e-06
 Identities = 27/81 (33%), Positives = 43/81 (53%), Gaps = 2/81 (2%)

Query: 57  IFFTGVGKSGFVANKISQTLISL-GIKSGFLNPLDALHGDIG-ILSSDDILVMFSKSGNT 114
           IF  G+G SG +A   +  L+ L GI+   L   +  H  +  +L   D+++  S SG T
Sbjct: 1   IFVIGIGGSGAIAAYFALELLELTGIEVVALIATELEHASLLSLLRKGDVVIALSYSGRT 60

Query: 115 EELLKVVPCAKAKGAYLVSVT 135
           EELL  +  AK  G  ++++T
Sbjct: 61  EELLAALEIAKELGIPVIAIT 81

SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars. Length = 87

>gnl|CDD|240148 cd05017, SIS_PGI_PMI_1, The members of this protein family contain the SIS (Sugar ISomerase) domain and have both the phosphoglucose isomerase (PGI) and the phosphomannose isomerase (PMI) functions

 Score = 44.6 bits (106), Expect = 6e-06
 Identities = 27/106 (25%), Positives = 46/106 (43%), Gaps = 7/106 (6%)

Query: 57  IFFTGVGKSGFVANKISQTLISLGIKSGFLNPLDALHGDIGILSSDDILVMFSKSGNTEE 116
           I   G+G SG   + +   L+       ++     L   +       +++  S SGNTEE
Sbjct: 2   IVILGMGGSGIGGDLLESLLLDEAKIPVYVVKDYTLPAFV---DRKTLVIAVSYSGNTEE 58

Query: 117 LLKVVPCAKAKGAYLVSVTSVEGNALAAVCDMN--VHLPVERELCP 160
            L  V  AK +GA +V++TS  G  L  +   +    + + + L P
Sbjct: 59  TLSAVEQAKERGAKIVAITS--GGKLLEMAREHGVPVIIIPKGLQP 102

These functions catalyze the reversible reactions of glucose 6-phosphate to fructose 6-phosphate, and mannose 6-phosphate to fructose 6-phosphate, respectively at an equal rate. This protein contains two SIS domains. This alignment is based on the first SIS domain. Length = 119

>gnl|CDD|239992 cd04620, CBS_pair_7, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 43.9 bits (104), Expect = 9e-06
 Identities = 27/93 (29%), Positives = 50/93 (53%), Gaps = 12/93 (12%)

Query: 244 CLLVIDEEYHLIGTFTDGDLRRTLKASGEGIFKLTVGEMCNRSPRTIGPDAM-----AVE 298
           C+LV+ E+  L+G FT+ D+ R L A G+ +  L +GE+  +   T+    +     A+ 
Sbjct: 27  CVLVV-EKGRLLGIFTERDIVR-LTAIGKDLSDLPIGEVMTQPVVTLQESEIQDIFTALS 84

Query: 299 AMQKMESPPSPVQFLPVINRQNILIGIVTLHGL 331
             ++ +     ++ LPV++ Q  LIG+VT   +
Sbjct: 85  LFRQHQ-----IRHLPVLDDQGQLIGLVTAESI 112

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 115

>gnl|CDD|223356 COG0279, GmhA, Phosphoheptose isomerase [Carbohydrate transport and metabolism]

 Score = 44.2 bits (105), Expect = 2e-05
 Identities = 18/55 (32%), Positives = 33/55 (60%)

Query: 103 DILVMFSKSGNTEELLKVVPCAKAKGAYLVSVTSVEGNALAAVCDMNVHLPVERE 157
           D+L+  S SGN++ +LK +  AK KG  ++++T  +G  LA + D+ + +P    
Sbjct: 111 DVLIGISTSGNSKNVLKAIEAAKEKGMTVIALTGKDGGKLAGLLDVEIRVPSTDT 165

Length = 176

>gnl|CDD|239985 cd04612, CBS_pair_SpoIVFB_EriC_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC

 Score = 43.0 bits (102), Expect = 2e-05
 Identities = 26/88 (29%), Positives = 44/88 (50%), Gaps = 5/88 (5%)

Query: 247 VIDEEYHLIGTFTDGDLRRTLKASGEGIFKLTVGEMCNRSPRTIGPDAMAVEAMQKMESP 306
           V+D+   L+G  T  D+RR    +      + VG++  R P T  PD    +A+++M   
Sbjct: 29  VVDDG-RLVGIVTLADIRR--VPAEGREATVLVGDVMTRDPVTASPDETLRDALKRMA-- 83

Query: 307 PSPVQFLPVINRQNILIGIVTLHGLVSA 334
              +  LPV++    L+GIV+   L+ A
Sbjct: 84  ERDIGRLPVVDDSGRLVGIVSRSDLLRA 111

SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 111

>gnl|CDD|239958 cd04585, CBS_pair_ACT_assoc2, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria

 Score = 43.0 bits (102), Expect = 2e-05
 Identities = 28/83 (33%), Positives = 42/83 (50%), Gaps = 11/83 (13%)

Query: 254 LIGTFTDGDLRRTL--KASGEGIF-------KLTVGEMCNRSPRTIGPDAMAVEAMQKME 304
           L+G  TD DL+     KA+   I+       K+ V ++  R P T+ PDA   EA + M 
Sbjct: 35  LVGIVTDRDLKLASPSKATTLDIWELYYLLSKIKVSDIMTRDPITVSPDASVEEAAELML 94

Query: 305 SPPSPVQFLPVINRQNILIGIVT 327
                +  LPV++ Q  L+GI+T
Sbjct: 95  E--RKISGLPVVDDQGRLVGIIT 115

Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 122

>gnl|CDD|225457 COG2905, COG2905, Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]

 Score = 45.8 bits (109), Expect = 2e-05
 Identities = 29/128 (22%), Positives = 51/128 (39%), Gaps = 6/128 (4%)

Query: 207 LIFKVQDVMKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRRT 266
           ++ +V +V               I D   ++  +G   L+V+D+   L+G  T  DLR  
Sbjct: 147 ILTRVGEVK--TLPAVTVSPQASIQDAARKMKDEGVSSLVVLDDSGPLLGIVTRKDLRSR 204

Query: 267 LKASGEGIFKLTVGEMCNRSPRTIGPDAMAVEAMQKMESPPSPVQFLPVINRQNILIGIV 326
           + A G       V E+      ++       EAM  M    + ++ LPV       +GI+
Sbjct: 205 VIADGRSK-TQKVSEVMTSPVISVDRGDFLFEAMLMMLR--NRIKHLPVTEDGQP-LGIL 260

Query: 327 TLHGLVSA 334
           TL  ++  
Sbjct: 261 TLTDILRL 268

Length = 610

>gnl|CDD|240214 cd05710, SIS_1, A subgroup of the SIS domain

 Score = 42.6 bits (101), Expect = 3e-05
 Identities = 17/49 (34%), Positives = 29/49 (59%)

Query: 99  LSSDDILVMFSKSGNTEELLKVVPCAKAKGAYLVSVTSVEGNALAAVCD 147
           L+   ++++ S SGNT+E +     AK KGA ++ +T  E + LA + D
Sbjct: 45  LTEKSVVILASHSGNTKETVAAAKFAKEKGATVIGLTDDEDSPLAKLAD 93

SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars. Length = 120

>gnl|CDD|201313 pfam00571, CBS, CBS domain

 Score = 40.2 bits (95), Expect = 4e-05
 Identities = 17/58 (29%), Positives = 27/58 (46%), Gaps = 2/58 (3%)

Query: 211 VQDVMKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRRTLK 268
           V+D+M P  ++        + + L  +   G   L V+DE+  L+G  T  DL R L 
Sbjct: 1   VKDIMTP--DVVTVPPDTSLEEALELMRENGISRLPVVDEDGKLVGIVTLRDLLRALL 56

CBS domains are small intracellular modules that pair together to form a stable globular domain. This family represents a single CBS domain. Pairs of these domains have been termed a Bateman domain. CBS domains have been shown to bind ligands with an adenosyl group such as AMP, ATP and S-AdoMet. CBS domains are found attached to a wide range of other protein domains suggesting that CBS domains may play a regulatory role making proteins sensitive to adenosyl carrying ligands. The region containing the CBS domains in Cystathionine-beta synthase is involved in regulation by S-AdoMet. CBS domain pairs from AMPK bind AMP or ATP. The CBS domains from IMPDH and the chloride channel CLC2 bind ATP. Length = 57

>gnl|CDD|239979 cd04606, CBS_pair_Mg_transporter, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain in the magnesium transporter, MgtE

 Score = 41.7 bits (99), Expect = 4e-05
 Identities = 21/83 (25%), Positives = 38/83 (45%), Gaps = 9/83 (10%)

Query: 247 VIDEEYHLIGTFTDGDLRRTLKASGEGIFKLTVGEMCNRSPRTIGPDAMAVEAMQKMESP 306
           V+DEE  L+G  +   LR  L A  +      V ++ +    ++  D    E  +  E  
Sbjct: 30  VVDEEGRLLGVVS---LRDLLLADPD----TPVSDIMDTDVISVSADDDQEEVARLFEK- 81

Query: 307 PSPVQFLPVINRQNILIGIVTLH 329
              +  LPV++ +  L+GI+T+ 
Sbjct: 82  -YDLLALPVVDEEGRLVGIITVD 103

MgtE and its homologs are found in eubacteria, archaebacteria, and eukaryota. Members of this family transport Mg2+ or other divalent cations into the cell via two highly conserved aspartates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 109

>gnl|CDD|183089 PRK11337, PRK11337, DNA-binding transcriptional repressor RpiR; Provisional

 Score = 44.0 bits (104), Expect = 5e-05
 Identities = 19/89 (21%), Positives = 43/89 (48%)

Query: 59  FTGVGKSGFVANKISQTLISLGIKSGFLNPLDALHGDIGILSSDDILVMFSKSGNTEELL 118
             G G S  +A  +    + +G++    +    +     +L   D++++ S SG T +++
Sbjct: 145 LYGAGGSAAIARDVQHKFLRIGVRCQAYDDAHIMLMSAALLQEGDVVLVVSHSGRTSDVI 204

Query: 119 KVVPCAKAKGAYLVSVTSVEGNALAAVCD 147
           + V  AK  GA ++ +T+   + +A + D
Sbjct: 205 EAVELAKKNGAKIICITNSYHSPIAKLAD 233

Length = 292

>gnl|CDD|239956 cd04583, CBS_pair_ABC_OpuCA_assoc2, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA

 Score = 41.4 bits (98), Expect = 6e-05
 Identities = 21/91 (23%), Positives = 40/91 (43%), Gaps = 10/91 (10%)

Query: 245 LLVIDEEYHLIGTFTDGDLRRTLKASGEGIFKLTVGEMCNRSPRTIGPDAMAVEAMQKME 304
           LLV+D++  L+G  +   L +  K         ++ ++      T+ PDA   + +  + 
Sbjct: 28  LLVVDKDNKLLGIVSLESLEQAYKE------AKSLEDIMLEDVFTVQPDASLRDVLGLVL 81

Query: 305 SP-PSPVQFLPVINRQNILIGIVTLHGLVSA 334
              P  V   PV++    L+G++T   LV  
Sbjct: 82  KRGPKYV---PVVDEDGKLVGLITRSSLVDT 109

OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 109

>gnl|CDD|239957 cd04584, CBS_pair_ACT_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria

 Score = 41.1 bits (97), Expect = 9e-05
 Identities = 29/94 (30%), Positives = 42/94 (44%), Gaps = 17/94 (18%)

Query: 245 LLVIDEEYHLIGTFTDGDLRR-------TLKA-SGEGIFKLTVGEMCNRSPRTIGPDAMA 296
           L V+DEE  L+G  TD DLR        TL       + K+ V E+  +   T+ P    
Sbjct: 27  LPVVDEEGRLVGIVTDRDLRDASPSPFTTLSEHELYLLLKMPVKEIMTKDVITVHPLDTV 86

Query: 297 VEA---MQKMESPPSPVQFLPVINRQNILIGIVT 327
            EA   M++       +  LPV+     L+GI+T
Sbjct: 87  EEAALLMREHR-----IGCLPVVEDGR-LVGIIT 114

Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 121

>gnl|CDD|183195 PRK11557, PRK11557, putative DNA-binding transcriptional regulator; Provisional

 Score = 42.4 bits (100), Expect = 1e-04
 Identities = 40/142 (28%), Positives = 65/142 (45%), Gaps = 2/142 (1%)

Query: 43  TLTFTQTLLKCRGTIFFTGVGKSGFVANKISQTLISLGIKSGFLNPLDALHGDIGILSSD 102
            L    T+L+    I  TG+G SG VA   +  L+ +GI +     + AL   +  LS D
Sbjct: 117 KLHECVTMLRSARRIILTGIGASGLVAQNFAWKLMKIGINAVAERDMHALLATVQALSPD 176

Query: 103 DILVMFSKSGNTEELLKVVPCAKAKGAYLVSVTSVEGNALAAVCDMNVHLPVERELCPFD 162
           D+L+  S SG   EL      A   GA ++++T    NAL       ++   E +     
Sbjct: 177 DLLLAISYSGERRELNLAADEALRVGAKVLAITGFTPNALQQRASHCLYTIAEEQAT--R 234

Query: 163 LAPVTSTAIQMVFGDTVAIAMM 184
            A ++ST  Q +  D + +A++
Sbjct: 235 SAAISSTHAQGMLTDLLFMALI 256

Length = 278

>gnl|CDD|237843 PRK14869, PRK14869, putative manganese-dependent inorganic pyrophosphatase; Provisional

 Score = 41.7 bits (99), Expect = 4e-04
 Identities = 19/59 (32%), Positives = 31/59 (52%), Gaps = 2/59 (3%)

Query: 276 KLTVGEMCNRSPRTIGPDAMAVEAMQKMESPPSPVQFLPVINRQNILIGIVTLHGLVSA 334
           K  V ++    P T+ PD    EA   M+   + V+ LPV++ +  L+G+V+L  L  A
Sbjct: 67  KPQVRDLEIDKPVTVSPDTSLKEAWNLMDE--NNVKTLPVVDEEGKLLGLVSLSDLARA 123

Length = 546

>gnl|CDD|240000 cd04629, CBS_pair_16, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 38.7 bits (91), Expect = 6e-04
 Identities = 21/89 (23%), Positives = 42/89 (47%), Gaps = 4/89 (4%)

Query: 247 VIDEEYHLIGTFTDGD-LRRTLKASGEGIFKLTVGEMCNRSPRTIGPDAMAVEAMQKMES 305
           V+D+  +L+G  ++ D L++ L++S       TV ++      T+ PD   V+  Q M  
Sbjct: 29  VVDDNGNLVGFLSEQDCLKQLLESSYHCDGVATVRDIMTTEVLTVSPDDSIVDLAQLMLK 88

Query: 306 PPSPVQFLPVINRQNILIGIVTLHGLVSA 334
                   PV++    L+G ++   ++ A
Sbjct: 89  AKPKR--YPVVDD-GKLVGQISRRDVLRA 114

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 114

>gnl|CDD|239988 cd04615, CBS_pair_2, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 38.6 bits (90), Expect = 6e-04
 Identities = 28/107 (26%), Positives = 47/107 (43%), Gaps = 4/107 (3%)

Query: 222 PVC-KEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRRTLKASGEGIFKLTVG 280
           P C      I   + E+ + G   L V+D++  L+G  T  D+      S E +    V 
Sbjct: 3   PSCVVLNTDIARAVAEMYTSGSRALPVVDDKKRLVGIITRYDVLSYALESEE-LKDAKVR 61

Query: 281 EMCNRSPRTIGPDAMAVEAMQKMESPPSPVQFLPVINRQNILIGIVT 327
           E+ N    TI  +    +A   M +  + +  LPV++ +  + GIVT
Sbjct: 62  EVMNSPVITIDANDSIAKARWLMSN--NNISRLPVLDDKGKVGGIVT 106

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 113

>gnl|CDD|129533 TIGR00441, gmhA, phosphoheptose isomerase

 Score = 38.7 bits (90), Expect = 0.001
 Identities = 16/51 (31%), Positives = 31/51 (60%)

Query: 103 DILVMFSKSGNTEELLKVVPCAKAKGAYLVSVTSVEGNALAAVCDMNVHLP 153
           D+L+  S SGN++ +LK +  AK KG   +++   +G  +A + D+ + +P
Sbjct: 81  DVLLGISTSGNSKNVLKAIEAAKDKGMKTITLAGKDGGKMAGLADIELRVP 131

This model describes phosphoheptose isomerase. Because a closely related paralo in Escherichia coli differs in function (DnaA initiator-associating protein diaA), this model has been rebuilt with a high stringency, and is likely to miss many true examples for phosphoheptose isomerase. Involved in lipopolysaccharide biosynthesis it may have a role in virulence in Haemophilus ducreyi [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides]. Length = 154

>gnl|CDD|240007 cd04636, CBS_pair_23, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 38.5 bits (90), Expect = 0.001
 Identities = 28/135 (20%), Positives = 54/135 (40%), Gaps = 30/135 (22%)

Query: 223 VCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRRTLKASGEGIFKLT---- 278
             K+ D + D +  L +     + V+D E  ++G  ++GDL R +   G+G+F +T    
Sbjct: 5   TVKKDDTLRDVVEILLTGKISGVPVVDNEGRVVGIVSEGDLIRKIYK-GKGLFYVTLLYS 63

Query: 279 ----------------VGEMCNRSPRTIGPD---AMAVEAMQKMESPPSPVQFLPVINRQ 319
                           V E+  +   T+  D         M K       ++ LPV+   
Sbjct: 64  VIFLDESKIKKLLGKKVEEIMTKKVITVDEDTTIEDVARIMSKKN-----IKRLPVV-DD 117

Query: 320 NILIGIVTLHGLVSA 334
             L+GI++   ++ +
Sbjct: 118 GKLVGIISRGDIIRS 132

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 132

>gnl|CDD|226594 COG4109, COG4109, Predicted transcriptional regulator containing CBS domains [Transcription]

 Score = 40.0 bits (94), Expect = 0.001
 Identities = 42/167 (25%), Positives = 72/167 (43%), Gaps = 32/167 (19%)

Query: 165 PVTSTAIQMVFGDTVAIAMMGARNLTRDEYAANHPAGRIGKSLIFKVQDVMKPQKELPVC 224
           PV ST+      DT  +A M  + L+            I K +I  V+D+M P ++    
Sbjct: 159 PVLSTSY-----DTFTVATMINKALSNQ---------LIKKDIIT-VEDIMTPLEDTSYL 203

Query: 225 KEGDLIMD--QLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRRTLKASGEGIFKLTVGEM 282
           +E D + D   LVE T  G     V++    ++G  T  D+     ++       T+ ++
Sbjct: 204 RETDTVEDWLDLVEKT--GHSRFPVVNRSMKVVGVVTMRDVLDKKPST-------TIEKV 254

Query: 283 CNRSPRTIGPDAMAVEAMQKM--ESPPSPVQFLPVINRQNILIGIVT 327
             ++P T+          Q M  E     ++ LPV++  N L+GI+T
Sbjct: 255 MTKNPITVRAKTSVASVAQMMIWEG----IEMLPVVDSNNTLLGIIT 297

Length = 432

>gnl|CDD|239956 cd04583, CBS_pair_ABC_OpuCA_assoc2, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA

 Score = 37.2 bits (87), Expect = 0.002
 Identities = 17/45 (37%), Positives = 26/45 (57%), Gaps = 2/45 (4%)

Query: 284 NRSPRTIGPDAMAVEAMQKMESPPSPVQFLPVINRQNILIGIVTL 328
            ++P TI PD    EA++ M      V  L V+++ N L+GIV+L
Sbjct: 1   IKNPVTITPDRTLAEAIKLMRD--KKVDSLLVVDKDNKLLGIVSL 43

OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 109

>gnl|CDD|240013 cd04642, CBS_pair_29, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 37.6 bits (88), Expect = 0.002
 Identities = 24/122 (19%), Positives = 48/122 (39%), Gaps = 14/122 (11%)

Query: 224 CKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLR------------RTLKASG 271
               + ++D    +       L V+DE+  LIG  +  DL+            RT+    
Sbjct: 6   IDSDERVLDAFKLMRKNNISGLPVVDEKGKLIGNISASDLKGLLLSPDDLLLYRTITFKE 65

Query: 272 EGIFKLTVGEMCNRSPRTIGPDAMAVEAMQKMESPPSPVQFLPVINRQNILIGIVTLHGL 331
                     + +R   T  P +   E + K+ +  + V  + V++ +   IG++TL  +
Sbjct: 66  LSEKFTDSDGVKSRPLITCTPSSTLKEVITKLVA--NKVHRVWVVDEEGKPIGVITLTDI 123

Query: 332 VS 333
           +S
Sbjct: 124 IS 125

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 126

>gnl|CDD|181536 PRK08674, PRK08674, bifunctional phosphoglucose/phosphomannose isomerase; Validated

 Score = 39.2 bits (92), Expect = 0.002
 Identities = 23/80 (28%), Positives = 37/80 (46%), Gaps = 3/80 (3%)

Query: 57  IFFTGVGKSGFVANKISQTLISLGIKSGFLNPLDALHGDIGILSSDDILVMFSKSGNTEE 116
           I  +G+G SG   + +   L        F+N    L   +       +++  S SGNTEE
Sbjct: 37  IVISGMGGSGIGGDLLRILLFDELKVPVFVNRDYTLPAFV---DEKTLVIAVSYSGNTEE 93

Query: 117 LLKVVPCAKAKGAYLVSVTS 136
            L  V  A  +GA ++++TS
Sbjct: 94  TLSAVEQALKRGAKIIAITS 113

Length = 337

>gnl|CDD|215531 PLN02981, PLN02981, glucosamine:fructose-6-phosphate aminotransferase

 Score = 39.7 bits (93), Expect = 0.002
 Identities = 29/114 (25%), Positives = 49/114 (42%), Gaps = 15/114 (13%)

Query: 46  FTQTLLKCRGTIFFTGVGKSGFVANKISQTL-------ISLGIKSGFLNPLDALHGDIGI 98
             +T+ + R  I F G G S   A      L       +++ + S  L+         G 
Sbjct: 356 HLKTIRRSR-RIVFIGCGTSYNAALAARPILEELSGVPVTMELASDLLDRQ-------GP 407

Query: 99  LSSDDILVMFSKSGNTEELLKVVPCAKAKGAYLVSVTSVEGNALAAVCDMNVHL 152
           +  +D  V  S+SG T + L+ +  AK  GA  V +T+  G+A++      VH+
Sbjct: 408 IYREDTAVFVSQSGETADTLRALEYAKENGALCVGITNTVGSAISRGTHCGVHI 461

Length = 680

>gnl|CDD|239959 cd04586, CBS_pair_BON_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the BON (bacterial OsmY and nodulation domain) domain

 Score = 37.6 bits (88), Expect = 0.002
 Identities = 30/119 (25%), Positives = 48/119 (40%), Gaps = 28/119 (23%)

Query: 239 SKGCGCLLVIDEEYHLIGTFTDGD-LRRTLKASG------------EGIFKL-------- 277
                 L V+D++  L+G  ++GD LRR     G             G  +L        
Sbjct: 22  DNHISGLPVVDDDGRLVGIVSEGDLLRRA--ELGTERRRARWLDLLAGAEELAAAFVRSH 79

Query: 278 --TVGEMCNRSPRTIGPDAMAVEAMQKMESPPSPVQFLPVINRQNILIGIVTLHGLVSA 334
              V ++  R   T+G D    E  + ME     ++ +PV+ R   L+GIV+   L+ A
Sbjct: 80  GRKVADVMTRPVVTVGEDTPLAEVAELMEE--HRIKRVPVV-RGGRLVGIVSRADLLRA 135

BON is a putative phospholipid-binding domain found in a family of osmotic shock protection proteins. It is also found in some secretins and a group of potential haemolysins. Its likely function is attachment to phospholipid membranes. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 135

>gnl|CDD|184408 PRK13937, PRK13937, phosphoheptose isomerase; Provisional

 Score = 38.3 bits (90), Expect = 0.002
 Identities = 14/51 (27%), Positives = 27/51 (52%)

Query: 103 DILVMFSKSGNTEELLKVVPCAKAKGAYLVSVTSVEGNALAAVCDMNVHLP 153
           D+L+  S SGN+  +L  +  A+  G   + +T  +G  +  +CD  + +P
Sbjct: 108 DVLIGISTSGNSPNVLAALEKARELGMKTIGLTGRDGGKMKELCDHLLIVP 158

Length = 188

>gnl|CDD|240114 cd04801, CBS_pair_M50_like, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the metalloprotease peptidase M50

 Score = 36.5 bits (85), Expect = 0.003
 Identities = 17/88 (19%), Positives = 35/88 (39%), Gaps = 3/88 (3%)

Query: 245 LLVIDEEYHLIGTFTDGDLRRTLKASGEGIFKLTVGEMCNRSPRTIGPDAMAVEAMQKME 304
            +V+D E   +G  +  DLR    +       + V     +   T+  +    E ++ +E
Sbjct: 28  FVVVDNEGRYVGIISLADLRAIPTSQWAQTTVIQVMTPAAKLV-TVLSEESLAEVLKLLE 86

Query: 305 SPPSPVQFLPVINRQNILIGIVTLHGLV 332
                +  L V+     +IG++T   L+
Sbjct: 87  E--QGLDELAVVEDSGQVIGLITEADLL 112

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 114

>gnl|CDD|239978 cd04605, CBS_pair_MET2_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the MET2 domain

 Score = 36.1 bits (84), Expect = 0.004
 Identities = 26/83 (31%), Positives = 41/83 (49%), Gaps = 7/83 (8%)

Query: 245 LLVIDEEYHLIGTFTDGDLRRTLKASGEGIFKLTVGEMCNRSPRTIGPDAMAVEAMQKME 304
           L V+DE+  L+G  T  D+    KA       +   ++  R+  T  PD     A +KME
Sbjct: 28  LPVVDEDGRLVGIVTSWDIS---KAVARDKKSVE--DIMTRNVITATPDEPIDVAARKME 82

Query: 305 SPPSPVQFLPVINRQNILIGIVT 327
                +  LPV++ +N +IGI+T
Sbjct: 83  R--HNISALPVVDAENRVIGIIT 103

Met2 is a key enzyme in the biosynthesis of methionine. It encodes a homoserine transacetylase involved in converting homoserine to O-acetyl homoserine. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 110

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	336
PRK11543	321	gutQ D-arabinose 5-phosphate isomerase; Provisiona	100.0
PRK10892	326	D-arabinose 5-phosphate isomerase; Provisional	100.0
TIGR00393	268	kpsF KpsF/GutQ family protein. This model describe	100.0
COG0794	202	GutQ Predicted sugar phosphate isomerase involved	99.97
COG1737	281	RpiR Transcriptional regulators [Transcription]	99.96
cd05005	179	SIS_PHI Hexulose-6-phosphate isomerase (PHI). PHI	99.96
TIGR03127	179	RuMP_HxlB 6-phospho 3-hexuloisomerase. Members of	99.96
PRK15482	285	transcriptional regulator MurR; Provisional	99.95
PRK11557	278	putative DNA-binding transcriptional regulator; Pr	99.95
PRK11337	292	DNA-binding transcriptional repressor RpiR; Provis	99.95
PRK11302	284	DNA-binding transcriptional regulator HexR; Provis	99.93
cd05014	128	SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5	99.91
PRK14101	638	bifunctional glucokinase/RpiR family transcription	99.9
PRK02947	246	hypothetical protein; Provisional	99.88
cd05013	139	SIS_RpiR RpiR-like protein. RpiR contains a SIS (S	99.88
PF01380	131	SIS: SIS domain SIS domain web page.; InterPro: IP	99.86
cd05008	126	SIS_GlmS_GlmD_1 SIS (Sugar ISomerase) domain repea	99.86
cd05006	177	SIS_GmhA Phosphoheptose isomerase is a member of t	99.85
PRK00414	192	gmhA phosphoheptose isomerase; Reviewed	99.83
PRK13936	197	phosphoheptose isomerase; Provisional	99.83
PRK05441	299	murQ N-acetylmuramic acid-6-phosphate etherase; Re	99.82
TIGR00441	154	gmhA phosphoheptose isomerase. Involved in lipopol	99.82
cd05710	120	SIS_1 A subgroup of the SIS domain. SIS (Sugar ISo	99.81
PRK13937	188	phosphoheptose isomerase; Provisional	99.81
PRK10886	196	DnaA initiator-associating protein DiaA; Provision	99.8
PRK13938	196	phosphoheptose isomerase; Provisional	99.8
cd05007	257	SIS_Etherase N-acetylmuramic acid 6-phosphate ethe	99.8
PRK00331	604	glucosamine--fructose-6-phosphate aminotransferase	99.8
TIGR00274	291	N-acetylmuramic acid 6-phosphate etherase. This pr	99.8
PRK11382	340	frlB fructoselysine-6-P-deglycase; Provisional	99.78
TIGR01135	607	glmS glucosamine--fructose-6-phosphate aminotransf	99.77
PTZ00295	640	glucosamine-fructose-6-phosphate aminotransferase;	99.76
PLN02981	680	glucosamine:fructose-6-phosphate aminotransferase	99.76
PTZ00394	670	glucosamine-fructose-6-phosphate aminotransferase;	99.76
PRK12570	296	N-acetylmuramic acid-6-phosphate etherase; Reviewe	99.75
COG2524	294	Predicted transcriptional regulator, contains C-te	99.75
cd05017	119	SIS_PGI_PMI_1 The members of this protein family c	99.71
cd05009	153	SIS_GlmS_GlmD_2 SIS (Sugar ISomerase) domain repea	99.71
COG2222	340	AgaS Predicted phosphosugar isomerases [Cell envel	99.7
TIGR02815	372	agaS_fam putative sugar isomerase, AgaS family. So	99.69
COG0449	597	GlmS Glucosamine 6-phosphate synthetase, contains	99.66
COG3620	187	Predicted transcriptional regulator with C-termina	99.66
cd04619	114	CBS_pair_6 The CBS domain, named after human CBS,	99.66
cd04630	114	CBS_pair_17 The CBS domain, named after human CBS,	99.65
COG0279	176	GmhA Phosphoheptose isomerase [Carbohydrate transp	99.65
cd04603	111	CBS_pair_KefB_assoc This cd contains two tandem re	99.63
cd04641	120	CBS_pair_28 The CBS domain, named after human CBS,	99.62
cd04618	98	CBS_pair_5 The CBS domain, named after human CBS,	99.61
PRK07107	502	inosine 5-monophosphate dehydrogenase; Validated	99.61
cd04623	113	CBS_pair_10 The CBS domain, named after human CBS,	99.6
cd04600	124	CBS_pair_HPP_assoc This cd contains two tandem rep	99.6
cd04593	115	CBS_pair_EriC_assoc_bac_arch This cd contains two	99.6
cd04643	116	CBS_pair_30 The CBS domain, named after human CBS,	99.59
cd04639	111	CBS_pair_26 The CBS domain, named after human CBS,	99.59
cd04617	118	CBS_pair_4 The CBS domain, named after human CBS,	99.59
COG3448	382	CBS-domain-containing membrane protein [Signal tra	99.58
PRK01862	574	putative voltage-gated ClC-type chloride channel C	99.58
PRK15094	292	magnesium/cobalt efflux protein CorC; Provisional	99.58
cd04631	125	CBS_pair_18 The CBS domain, named after human CBS,	99.58
cd04583	109	CBS_pair_ABC_OpuCA_assoc2 This cd contains two tan	99.58
cd04587	113	CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains	99.57
cd04605	110	CBS_pair_MET2_assoc This cd contains two tandem re	99.57
cd04604	114	CBS_pair_KpsF_GutQ_assoc This cd contains two tand	99.57
cd04801	114	CBS_pair_M50_like This cd contains two tandem repe	99.57
cd04596	108	CBS_pair_DRTGG_assoc This cd contains two tandem r	99.57
cd04624	112	CBS_pair_11 The CBS domain, named after human CBS,	99.56
cd04613	114	CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two	99.56
cd04615	113	CBS_pair_2 The CBS domain, named after human CBS,	99.56
cd04607	113	CBS_pair_NTP_transferase_assoc This cd contains tw	99.56
cd04803	122	CBS_pair_15 The CBS domain, named after human CBS,	99.56
cd04629	114	CBS_pair_16 The CBS domain, named after human CBS,	99.56
cd04621	135	CBS_pair_8 The CBS domain, named after human CBS,	99.56
cd04614	96	CBS_pair_1 The CBS domain, named after human CBS,	99.56
cd04590	111	CBS_pair_CorC_HlyC_assoc This cd contains two tand	99.56
cd04627	123	CBS_pair_14 The CBS domain, named after human CBS,	99.55
cd04608	124	CBS_pair_PALP_assoc This cd contains two tandem re	99.55
cd04595	110	CBS_pair_DHH_polyA_Pol_assoc This cd contains two	99.55
cd04622	113	CBS_pair_9 The CBS domain, named after human CBS,	99.55
cd04625	112	CBS_pair_12 The CBS domain, named after human CBS,	99.55
cd04626	111	CBS_pair_13 The CBS domain, named after human CBS,	99.55
cd04611	111	CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two	99.54
cd04642	126	CBS_pair_29 The CBS domain, named after human CBS,	99.54
cd04582	106	CBS_pair_ABC_OpuCA_assoc This cd contains two tand	99.54
PRK08674	337	bifunctional phosphoglucose/phosphomannose isomera	99.54
cd04586	135	CBS_pair_BON_assoc This cd contains two tandem rep	99.54
cd04588	110	CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains	99.54
cd04632	128	CBS_pair_19 The CBS domain, named after human CBS,	99.53
PRK07807	479	inosine 5-monophosphate dehydrogenase; Validated	99.53
COG4109	432	Predicted transcriptional regulator containing CBS	99.53
cd04636	132	CBS_pair_23 The CBS domain, named after human CBS,	99.53
cd04800	111	CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains	99.52
TIGR03520	408	GldE gliding motility-associated protein GldE. Mem	99.52
cd04795	87	SIS SIS domain. SIS (Sugar ISomerase) domains are	99.52
cd04635	122	CBS_pair_22 The CBS domain, named after human CBS,	99.52
cd04640	126	CBS_pair_27 The CBS domain, named after human CBS,	99.52
cd04620	115	CBS_pair_7 The CBS domain, named after human CBS,	99.52
cd04585	122	CBS_pair_ACT_assoc2 This cd contains two tandem re	99.51
cd04612	111	CBS_pair_SpoIVFB_EriC_assoc This cd contains two t	99.51
cd04589	111	CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains	99.51
PF13580	138	SIS_2: SIS domain; PDB: 1TK9_C 2I22_B 2I2W_A 1X92_	99.51
cd04602	114	CBS_pair_IMPDH_2 This cd contains two tandem repea	99.5
cd04606	109	CBS_pair_Mg_transporter This cd contains two tande	99.5
COG2905	610	Predicted signal-transduction protein containing c	99.5
COG4821	243	Uncharacterized protein containing SIS (Sugar ISom	99.49
cd04802	112	CBS_pair_3 The CBS domain, named after human CBS,	99.49
cd04637	122	CBS_pair_24 The CBS domain, named after human CBS,	99.49
cd04601	110	CBS_pair_IMPDH This cd contains two tandem repeats	99.48
cd04594	104	CBS_pair_EriC_assoc_archaea This cd contains two t	99.47
cd04610	107	CBS_pair_ParBc_assoc This cd contains two tandem r	99.46
cd04584	121	CBS_pair_ACT_assoc This cd contains two tandem rep	99.46
cd04599	105	CBS_pair_GGDEF_assoc2 This cd contains two tandem	99.46
cd04633	121	CBS_pair_20 The CBS domain, named after human CBS,	99.46
cd04591	105	CBS_pair_EriC_assoc_euk_bac This cd contains two t	99.46
cd04609	110	CBS_pair_PALP_assoc2 This cd contains two tandem r	99.45
cd02205	113	CBS_pair The CBS domain, named after human CBS, is	99.45
TIGR01303	475	IMP_DH_rel_1 IMP dehydrogenase family protein. Thi	99.44
TIGR01302	450	IMP_dehydrog inosine-5'-monophosphate dehydrogenas	99.42
TIGR02128	308	G6PI_arch bifunctional phosphoglucose/phosphomanno	99.42
PRK11573	413	hypothetical protein; Provisional	99.42
TIGR00400	449	mgtE Mg2+ transporter (mgtE). This family of proka	99.42
KOG1268	670	consensus Glucosamine 6-phosphate synthetases, con	99.41
PRK05567	486	inosine 5'-monophosphate dehydrogenase; Reviewed	99.4
PLN02274	505	inosine-5'-monophosphate dehydrogenase	99.4
TIGR01137	454	cysta_beta cystathionine beta-synthase. Members of	99.39
PTZ00314	495	inosine-5'-monophosphate dehydrogenase; Provisiona	99.39
cd04634	143	CBS_pair_21 The CBS domain, named after human CBS,	99.39
cd04598	119	CBS_pair_GGDEF_assoc This cd contains two tandem r	99.39
cd04638	106	CBS_pair_25 The CBS domain, named after human CBS,	99.38
cd05015	158	SIS_PGI_1 Phosphoglucose isomerase (PGI) contains	99.34
PTZ00295	640	glucosamine-fructose-6-phosphate aminotransferase;	99.34
COG0517	117	FOG: CBS domain [General function prediction only]	99.33
COG1253	429	TlyC Hemolysins and related proteins containing CB	99.32
PRK14869	546	putative manganese-dependent inorganic pyrophospha	99.28
COG2103	298	Predicted sugar phosphate isomerase [General funct	99.26
COG4536	423	CorB Putative Mg2+ and Co2+ transporter CorB [Inor	99.24
COG2239	451	MgtE Mg/Co/Ni transporter MgtE (contains CBS domai	99.22
cd04592	133	CBS_pair_EriC_assoc_euk This cd contains two tande	99.2
COG4535	293	CorC Putative Mg2+ and Co2+ transporter CorC [Inor	99.14
PRK10070	400	glycine betaine transporter ATP-binding subunit; P	99.09
TIGR01186	363	proV glycine betaine/L-proline transport ATP bindi	99.01
PF00571	57	CBS: CBS domain CBS domain web page. Mutations in	98.99
PF00571	57	CBS: CBS domain CBS domain web page. Mutations in	98.9
KOG0474	762	consensus Cl- channel CLC-7 and related proteins (	98.85
KOG2550	503	consensus IMP dehydrogenase/GMP reductase [Nucleot	98.84
KOG1764	381	consensus 5'-AMP-activated protein kinase, gamma s	98.84
PTZ00394	670	glucosamine-fructose-6-phosphate aminotransferase;	98.76
COG0449	597	GlmS Glucosamine 6-phosphate synthetase, contains	98.66
TIGR01135	607	glmS glucosamine--fructose-6-phosphate aminotransf	98.63
PRK00331	604	glucosamine--fructose-6-phosphate aminotransferase	98.6
PF10740	172	DUF2529: Protein of unknown function (DUF2529); In	98.5
PLN02981	680	glucosamine:fructose-6-phosphate aminotransferase	98.43
cd05010	151	SIS_AgaS_like AgaS-like protein. AgaS contains a S	98.41
PRK11382	340	frlB fructoselysine-6-P-deglycase; Provisional	98.34
COG2524	294	Predicted transcriptional regulator, contains C-te	98.34
TIGR00400	449	mgtE Mg2+ transporter (mgtE). This family of proka	98.3
KOG0475	696	consensus Cl- channel CLC-3 and related proteins (	98.27
cd04603	111	CBS_pair_KefB_assoc This cd contains two tandem re	98.25
COG2222	340	AgaS Predicted phosphosugar isomerases [Cell envel	98.25
PRK03868	410	glucose-6-phosphate isomerase; Provisional	98.24
cd04597	113	CBS_pair_DRTGG_assoc2 This cd contains two tandem	98.22
cd04597	113	CBS_pair_DRTGG_assoc2 This cd contains two tandem	98.15
PRK14869	546	putative manganese-dependent inorganic pyrophospha	98.11
PRK00973	446	glucose-6-phosphate isomerase; Provisional	98.1
cd04619	114	CBS_pair_6 The CBS domain, named after human CBS,	98.07
TIGR02815	372	agaS_fam putative sugar isomerase, AgaS family. So	98.04
PRK14096	528	pgi glucose-6-phosphate isomerase; Provisional	98.03
PRK09533	948	bifunctional transaldolase/phosoglucose isomerase;	98.03
COG3448	382	CBS-domain-containing membrane protein [Signal tra	98.0
cd04607	113	CBS_pair_NTP_transferase_assoc This cd contains tw	97.94
cd04617	118	CBS_pair_4 The CBS domain, named after human CBS,	97.92
cd04801	114	CBS_pair_M50_like This cd contains two tandem repe	97.91
COG3620	187	Predicted transcriptional regulator with C-termina	97.9
cd04627	123	CBS_pair_14 The CBS domain, named after human CBS,	97.89
cd04618	98	CBS_pair_5 The CBS domain, named after human CBS,	97.88
cd04620	115	CBS_pair_7 The CBS domain, named after human CBS,	97.87
cd04600	124	CBS_pair_HPP_assoc This cd contains two tandem rep	97.87
cd04606	109	CBS_pair_Mg_transporter This cd contains two tande	97.86
KOG1764	381	consensus 5'-AMP-activated protein kinase, gamma s	97.84
cd04640	126	CBS_pair_27 The CBS domain, named after human CBS,	97.83
TIGR03415	382	ABC_choXWV_ATP choline ABC transporter, ATP-bindin	97.82
cd04604	114	CBS_pair_KpsF_GutQ_assoc This cd contains two tand	97.82
cd04610	107	CBS_pair_ParBc_assoc This cd contains two tandem r	97.82
cd04596	108	CBS_pair_DRTGG_assoc This cd contains two tandem r	97.81
cd04639	111	CBS_pair_26 The CBS domain, named after human CBS,	97.8
cd04602	114	CBS_pair_IMPDH_2 This cd contains two tandem repea	97.8
cd04583	109	CBS_pair_ABC_OpuCA_assoc2 This cd contains two tan	97.79
PRK07107	502	inosine 5-monophosphate dehydrogenase; Validated	97.79
cd04585	122	CBS_pair_ACT_assoc2 This cd contains two tandem re	97.79
cd04630	114	CBS_pair_17 The CBS domain, named after human CBS,	97.79
cd04641	120	CBS_pair_28 The CBS domain, named after human CBS,	97.78
PRK05567	486	inosine 5'-monophosphate dehydrogenase; Reviewed	97.77
cd04582	106	CBS_pair_ABC_OpuCA_assoc This cd contains two tand	97.77
smart00116	49	CBS Domain in cystathionine beta-synthase and othe	97.77
cd04615	113	CBS_pair_2 The CBS domain, named after human CBS,	97.75
cd04611	111	CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two	97.75
cd04587	113	CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains	97.75
cd04625	112	CBS_pair_12 The CBS domain, named after human CBS,	97.74
PRK14095	533	pgi glucose-6-phosphate isomerase; Provisional	97.74
smart00116	49	CBS Domain in cystathionine beta-synthase and othe	97.73
cd04635	122	CBS_pair_22 The CBS domain, named after human CBS,	97.7
PRK07807	479	inosine 5-monophosphate dehydrogenase; Validated	97.7
cd04614	96	CBS_pair_1 The CBS domain, named after human CBS,	97.7
cd04631	125	CBS_pair_18 The CBS domain, named after human CBS,	97.7
cd04593	115	CBS_pair_EriC_assoc_bac_arch This cd contains two	97.69
TIGR01303	475	IMP_DH_rel_1 IMP dehydrogenase family protein. Thi	97.69
cd04803	122	CBS_pair_15 The CBS domain, named after human CBS,	97.69
cd04590	111	CBS_pair_CorC_HlyC_assoc This cd contains two tand	97.68
cd04621	135	CBS_pair_8 The CBS domain, named after human CBS,	97.68
cd04588	110	CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains	97.67
cd04599	105	CBS_pair_GGDEF_assoc2 This cd contains two tandem	97.67
PLN02274	505	inosine-5'-monophosphate dehydrogenase	97.67
cd04637	122	CBS_pair_24 The CBS domain, named after human CBS,	97.66
cd04623	113	CBS_pair_10 The CBS domain, named after human CBS,	97.66
cd04622	113	CBS_pair_9 The CBS domain, named after human CBS,	97.65
cd04586	135	CBS_pair_BON_assoc This cd contains two tandem rep	97.64
cd04601	110	CBS_pair_IMPDH This cd contains two tandem repeats	97.64
cd04595	110	CBS_pair_DHH_polyA_Pol_assoc This cd contains two	97.63
cd04592	133	CBS_pair_EriC_assoc_euk This cd contains two tande	97.61
cd04800	111	CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains	97.61
cd04613	114	CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two	97.61
cd04626	111	CBS_pair_13 The CBS domain, named after human CBS,	97.6
cd04605	110	CBS_pair_MET2_assoc This cd contains two tandem re	97.6
cd04643	116	CBS_pair_30 The CBS domain, named after human CBS,	97.6
PRK11543	321	gutQ D-arabinose 5-phosphate isomerase; Provisiona	97.59
cd04594	104	CBS_pair_EriC_assoc_archaea This cd contains two t	97.59
cd04612	111	CBS_pair_SpoIVFB_EriC_assoc This cd contains two t	97.59
cd04589	111	CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains	97.58
cd04624	112	CBS_pair_11 The CBS domain, named after human CBS,	97.58
COG0166	446	Pgi Glucose-6-phosphate isomerase [Carbohydrate tr	97.56
cd04629	114	CBS_pair_16 The CBS domain, named after human CBS,	97.55
cd04642	126	CBS_pair_29 The CBS domain, named after human CBS,	97.53
cd04802	112	CBS_pair_3 The CBS domain, named after human CBS,	97.52
PRK15094	292	magnesium/cobalt efflux protein CorC; Provisional	97.52
cd04636	132	CBS_pair_23 The CBS domain, named after human CBS,	97.51
cd04633	121	CBS_pair_20 The CBS domain, named after human CBS,	97.49
cd04608	124	CBS_pair_PALP_assoc This cd contains two tandem re	97.49
PRK10892	326	D-arabinose 5-phosphate isomerase; Provisional	97.45
COG4109	432	Predicted transcriptional regulator containing CBS	97.44
PTZ00314	495	inosine-5'-monophosphate dehydrogenase; Provisiona	97.41
cd04584	121	CBS_pair_ACT_assoc This cd contains two tandem rep	97.38
cd04591	105	CBS_pair_EriC_assoc_euk_bac This cd contains two t	97.35
cd04632	128	CBS_pair_19 The CBS domain, named after human CBS,	97.35
TIGR00393	268	kpsF KpsF/GutQ family protein. This model describe	97.32
PRK01862	574	putative voltage-gated ClC-type chloride channel C	97.3
COG4175	386	ProV ABC-type proline/glycine betaine transport sy	97.3
COG0517	117	FOG: CBS domain [General function prediction only]	97.28
PRK14097	448	pgi glucose-6-phosphate isomerase; Provisional	97.27
cd02205	113	CBS_pair The CBS domain, named after human CBS, is	97.21
cd04598	119	CBS_pair_GGDEF_assoc This cd contains two tandem r	97.19
TIGR03520	408	GldE gliding motility-associated protein GldE. Mem	97.18
TIGR01137	454	cysta_beta cystathionine beta-synthase. Members of	97.17
cd04634	143	CBS_pair_21 The CBS domain, named after human CBS,	97.15
cd04638	106	CBS_pair_25 The CBS domain, named after human CBS,	97.14
TIGR01302	450	IMP_dehydrog inosine-5'-monophosphate dehydrogenas	97.0
cd04609	110	CBS_pair_PALP_assoc2 This cd contains two tandem r	96.97
COG2905	610	Predicted signal-transduction protein containing c	96.89
TIGR01012	196	Sa_S2_E_A ribosomal protein Sa(cytosolic)/S2(archa	96.88
COG2239	451	MgtE Mg/Co/Ni transporter MgtE (contains CBS domai	96.86
TIGR01186	363	proV glycine betaine/L-proline transport ATP bindi	96.82
PRK04020	204	rps2P 30S ribosomal protein S2; Provisional	96.73
PF00342	486	PGI: Phosphoglucose isomerase The structure is C a	96.63
PTZ00254	249	40S ribosomal protein SA; Provisional	96.61
PRK00179	548	pgi glucose-6-phosphate isomerase; Reviewed	96.57
PLN02649	560	glucose-6-phosphate isomerase	96.41
PTZ00430	552	glucose-6-phosphate isomerase; Provisional	96.21
cd01425	193	RPS2 Ribosomal protein S2 (RPS2), involved in form	96.21
PRK10070	400	glycine betaine transporter ATP-binding subunit; P	96.16
KOG0476	931	consensus Cl- channel CLC-2 and related proteins (	96.13
PRK05299	258	rpsB 30S ribosomal protein S2; Provisional	95.83
cd02767	574	MopB_ydeP The MopB_ydeP CD includes a group of rel	95.68
PRK11573	413	hypothetical protein; Provisional	95.44
TIGR00315	162	cdhB CO dehydrogenase/acetyl-CoA synthase complex,	95.42
TIGR01011	225	rpsB_bact ribosomal protein S2, bacterial type. TI	95.38
PRK12311	326	rpsB 30S ribosomal protein S2/unknown domain fusio	95.32
TIGR01701	743	Fdhalpha-like oxidoreductase alpha (molybdopterin)	95.19
KOG1268	670	consensus Glucosamine 6-phosphate synthetases, con	95.15
COG0052	252	RpsB Ribosomal protein S2 [Translation, ribosomal	95.11
CHL00067	230	rps2 ribosomal protein S2	95.09
COG1253	429	TlyC Hemolysins and related proteins containing CB	94.95
PRK09939	759	putative oxidoreductase; Provisional	94.64
KOG2550	503	consensus IMP dehydrogenase/GMP reductase [Nucleot	94.49
KOG0474	762	consensus Cl- channel CLC-7 and related proteins (	94.24
PF00318	211	Ribosomal_S2: Ribosomal protein S2; InterPro: IPR0	93.84
COG1125	309	OpuBA ABC-type proline/glycine betaine transport s	93.42
COG4536	423	CorB Putative Mg2+ and Co2+ transporter CorB [Inor	93.42
COG1125	309	OpuBA ABC-type proline/glycine betaine transport s	93.19
PF10087	97	DUF2325: Uncharacterized protein conserved in bact	92.66
PRK00945	171	acetyl-CoA decarbonylase/synthase complex subunit	92.23
KOG2118	498	consensus Predicted membrane protein, contains two	92.21
TIGR01553	1009	formate-DH-alph formate dehydrogenase, alpha subun	92.14
TIGR03415	382	ABC_choXWV_ATP choline ABC transporter, ATP-bindin	91.76
TIGR01591	671	Fdh-alpha formate dehydrogenase, alpha subunit, ar	90.59
cd02753	512	MopB_Formate-Dh-H Formate dehydrogenase H (Formate	90.49
cd02759	477	MopB_Acetylene-hydratase The MopB_Acetylene-hydrat	90.37
PF01936	146	NYN: NYN domain; InterPro: IPR021139 This highly c	90.22
TIGR00288	160	conserved hypothetical protein TIGR00288. This fam	90.13
cd02754	565	MopB_Nitrate-R-NapA-like Nitrate reductases, NapA	89.91
cd02750	461	MopB_Nitrate-R-NarG-like Respiratory nitrate reduc	89.78
PRK13532	830	nitrate reductase catalytic subunit; Provisional	89.72
cd02755	454	MopB_Thiosulfate-R-like The MopB_Thiosulfate-R-lik	89.58
cd02762	539	MopB_1 The MopB_1 CD includes a group of related u	89.42
COG4015	217	Predicted dinucleotide-utilizing enzyme of the Thi	88.85
cd02766	501	MopB_3 The MopB_3 CD includes a group of related u	88.78
cd02752	649	MopB_Formate-Dh-Na-like Formate dehydrogenase N, a	88.32
KOG2446	546	consensus Glucose-6-phosphate isomerase [Carbohydr	88.29
KOG0475	696	consensus Cl- channel CLC-3 and related proteins (	88.23
PF13793	116	Pribosyltran_N: N-terminal domain of ribose phosph	88.17
TIGR03479	912	DMSO_red_II_alp DMSO reductase family type II enzy	88.15
PRK06702	432	O-acetylhomoserine aminocarboxypropyltransferase;	87.99
cd02765	567	MopB_4 The MopB_4 CD includes a group of related u	87.85
COG4535	293	CorC Putative Mg2+ and Co2+ transporter CorC [Inor	87.63
cd06167	149	LabA_like LabA_like proteins. A well conserved gro	87.21
cd02770	617	MopB_DmsA-EC This CD (MopB_DmsA-EC) includes the D	87.0
cd02763	679	MopB_2 The MopB_2 CD includes a group of related u	86.99
PRK07860	797	NADH dehydrogenase subunit G; Validated	86.5
cd02761	415	MopB_FmdB-FwdB The MopB_FmdB-FwdB CD contains the	86.39
KOG0832	251	consensus Mitochondrial/chloroplast ribosomal prot	86.11
TIGR01706	830	NAPA periplasmic nitrate reductase, large subunit.	86.04
smart00642	166	Aamy Alpha-amylase domain.	85.95
TIGR02166	797	dmsA_ynfE anaerobic dimethyl sulfoxide reductase,	85.75
cd01410	206	SIRT7 SIRT7: Eukaryotic and prokaryotic group (cla	84.55
COG4175	386	ProV ABC-type proline/glycine betaine transport sy	84.1
PF08484	160	Methyltransf_14: C-methyltransferase C-terminal do	83.95
cd01409	260	SIRT4 SIRT4: Eukaryotic and prokaryotic group (cla	83.89
cd02757	523	MopB_Arsenate-R This CD includes the respiratory a	83.64
cd01413	222	SIR2_Af2 SIR2_Af2: Archaeal and prokaryotic group	83.46
TIGR01973	603	NuoG NADH-quinone oxidoreductase, chain G. This mo	82.27
PRK07199	301	phosphoribosylpyrophosphate synthetase; Provisiona	81.63
PRK00553	332	ribose-phosphate pyrophosphokinase; Provisional	81.22
PRK14138	244	NAD-dependent deacetylase; Provisional	81.15
PRK09271	160	flavodoxin; Provisional	81.08
PRK02458	323	ribose-phosphate pyrophosphokinase; Provisional	80.87
cd02760	760	MopB_Phenylacetyl-CoA-OR The MopB_Phenylacetyl-CoA	80.76
PRK15488	759	thiosulfate reductase PhsA; Provisional	80.73
PRK01710	458	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	80.49
TIGR03590	279	PseG pseudaminic acid biosynthesis-associated prot	80.25
TIGR01754	140	flav_RNR ribonucleotide reductase-associated flavo	80.13
COG1832	140	Predicted CoA-binding protein [General function pr	80.1
PTZ00409	271	Sir2 (Silent Information Regulator) protein; Provi	80.07

>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional

Probab=100.00  E-value=4.1e-47  Score=344.31  Aligned_cols=314  Identities=31%  Similarity=0.554  Sum_probs=281.1

Q ss_pred             HHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHcCCCeEEEEeccchHHHHHHHHHHHHhcCCeeeecCCccccccccC
Q 019775           18 NTLLDLFKSQQDHLNYFFQHLSLPHTLTFTQTLLKCRGTIFFTGVGKSGFVANKISQTLISLGIKSGFLNPLDALHGDIG   97 (336)
Q Consensus        18 ~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~i~~a~~~I~i~G~G~s~~~a~~~~~~l~~~g~~~~~~~~~~~~~~~~~   97 (336)
                      ++..+.+...++.++++++.++ +++.++++.+.+++++||++|.|.|+.+|++|+++|.++|+++.++++.+.+.....
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~~l~~~~~~I~i~G~G~S~~~A~~~~~~l~~~g~~~~~~~~~~~~~~~~~   85 (321)
T PRK11543          7 NAGRQTLMLELQEASRLPERLG-DDFVRAANIILHCEGKVVVSGIGKSGHIGKKIAATLASTGTPAFFVHPAEALHGDLG   85 (321)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcc-HHHHHHHHHHHhcCCcEEEEecChhHHHHHHHHHHHHcCCCceeecChHHHhhCCcC
Confidence            4455666777777788888877 679999999988734999999999999999999999999999999988777777778


Q ss_pred             CCCCCcEEEEEeCCCCcHHHHHHHHHHHHcCCeEEEEeCCCCCccccccCEEEEcCCCcccCCCCCCChhHHHHHHHHHH
Q 019775           98 ILSSDDILVMFSKSGNTEELLKVVPCAKAKGAYLVSVTSVEGNALAAVCDMNVHLPVERELCPFDLAPVTSTAIQMVFGD  177 (336)
Q Consensus        98 ~~~~~dlvi~iS~sG~~~~~~~~~~~ak~~g~~vi~IT~~~~s~l~~~ad~~i~~~~~~~~~~~~~~~~~s~~~~~~l~d  177 (336)
                      .++++|++|+||+||++++++++++.||++|+++|+||++.+||++++||+++.++...+...+...++++.++.+++.|
T Consensus        86 ~~~~~d~~i~iS~sG~t~~~~~~~~~ak~~g~~vI~iT~~~~s~la~~ad~~l~~~~~~~~~~~~~~~~ss~~~~~~~~d  165 (321)
T PRK11543         86 MIESRDVMLFISYSGGAKELDLIIPRLEDKSIALLAMTGKPTSPLGLAAKAVLDISVEREACPMHLAPTSSTVNTLMMGD  165 (321)
T ss_pred             ccCCCCEEEEEeCCCCcHHHHHHHHHHHHcCCeEEEEECCCCChhHHhCCEEEEcCCccccCCCCCCcHHHHHHHHHHHH
Confidence            89999999999999999999999999999999999999999999999999999998754423445678999999999999


Q ss_pred             HHHHHHHhhcCCChHHHhhcCCCCchhhhhhhhhhhccccCCCCccccCCCcHHHHHHHHHhcCcceEEEEcCCCcEEEE
Q 019775          178 TVAIAMMGARNLTRDEYAANHPAGRIGKSLIFKVQDVMKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGT  257 (336)
Q Consensus       178 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~  257 (336)
                      .|+..+..+.+...++|.+.|+.+.+++.+.++|+++|.++.++++++++.++.++.+.|.+++...+||+|++|+++|+
T Consensus       166 sL~~~~l~~~g~~~~~~~~~~~~~~l~~~~~~~V~~im~~~~~~~~v~~~~sv~~a~~~~~~~~~~~~~Vvd~~g~~iG~  245 (321)
T PRK11543        166 ALAMAVMQARGFNEEDFARSHPAGALGARLLNKVHHLMRRDDAIPQVALTASVMDAMLELSRTGLGLVAVCDAQQQVQGV  245 (321)
T ss_pred             HHHHHHHHHcCCCHHHhccCCCCCHHHHHHHhHHHHHhccCCCCcEeCCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEE
Confidence            99999999999999999999999999988889999999997445699999999999999998888999999999999999


Q ss_pred             eeHHHHHHHHHhcCCchhhhhHhhhcCCCCeeeCCCccHHHHHHHhcCCCCCccEeEEEeCCCcEEEEEehhhHhhcCC
Q 019775          258 FTDGDLRRTLKASGEGIFKLTVGEMCNRSPRTIGPDAMAVEAMQKMESPPSPVQFLPVINRQNILIGIVTLHGLVSAGL  336 (336)
Q Consensus       258 it~~dl~~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~l~Vv~~~~~~iGiit~~di~~~~~  336 (336)
                      |+..|+...+.....  ...++.++|.+++.++.+++++.++++.|.++  +...+||+|++|+++|+||+.|++++|.
T Consensus       246 vt~~dl~~~~~~~~~--~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~--~~~~lpVvd~~~~lvGvIt~~di~~~~~  320 (321)
T PRK11543        246 FTDGDLRRWLVGGGA--LTTPVNEAMTRGGTTLQAQSRAIDAKEILMKR--KITAAPVVDENGKLTGAINLQDFYQAGI  320 (321)
T ss_pred             ecHHHHHHHHhCCCC--cCCcHHHhcCCCCEEECCCCCHHHHHHHHHHc--CCCEEEEEcCCCeEEEEEEHHHHHhccC
Confidence            999999886643221  24568899999999999999999999999999  9999999998899999999999999984

>PRK10892 D-arabinose 5-phosphate isomerase; Provisional

Probab=100.00  E-value=1.5e-46  Score=341.14  Aligned_cols=319  Identities=29%  Similarity=0.561  Sum_probs=283.1

Q ss_pred             CCCcchHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHcCCCeEEEEeccchHHHHHHHHHHHHhcCCeeeecCCccc
Q 019775           12 PHKVSENTLLDLFKSQQDHLNYFFQHLSLPHTLTFTQTLLKCRGTIFFTGVGKSGFVANKISQTLISLGIKSGFLNPLDA   91 (336)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~i~~a~~~I~i~G~G~s~~~a~~~~~~l~~~g~~~~~~~~~~~   91 (336)
                      +.+....+.+++...+.+.+++|...++. +++++++++.+++++||++|.|.|+.+|.+++++|.++|+++....+...
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~t~~~~~~-~l~~~~~~l~~a~~~I~i~G~G~S~~~a~~~~~~l~~~g~~~~~~~~~~~   84 (326)
T PRK10892          6 PGFDFQQAGKEVLAIEREGLAELDQYINQ-DFTLACEKMFWCKGKVVVMGMGKSGHIGRKMAATFASTGTPSFFVHPGEA   84 (326)
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhcCCeEEEEeCcHhHHHHHHHHHHHhcCCceeEEeChHHh
Confidence            34566788899999999999999999997 89999999988734999999999999999999999999999999776555


Q ss_pred             cccccCCCCCCcEEEEEeCCCCcHHHHHHHHHHHHcCCeEEEEeCCCCCccccccCEEEEcCCCcccCCCCCCChhHHHH
Q 019775           92 LHGDIGILSSDDILVMFSKSGNTEELLKVVPCAKAKGAYLVSVTSVEGNALAAVCDMNVHLPVERELCPFDLAPVTSTAI  171 (336)
Q Consensus        92 ~~~~~~~~~~~dlvi~iS~sG~~~~~~~~~~~ak~~g~~vi~IT~~~~s~l~~~ad~~i~~~~~~~~~~~~~~~~~s~~~  171 (336)
                      .......++++|++|++|+||++++++++++.||++|+++|+||++++||++++||+.|.++++.+..+....+++|.++
T Consensus        85 ~~~~~~~~~~~d~~I~iS~sG~t~~~~~~~~~ak~~g~~vi~iT~~~~s~la~~ad~~l~~~~~~~~~~~~~~~~~s~ia  164 (326)
T PRK10892         85 AHGDLGMVTPQDVVIAISNSGESSEILALIPVLKRLHVPLICITGRPESSMARAADIHLCVKVPKEACPLGLAPTSSTTA  164 (326)
T ss_pred             hccccccCCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCcEEEEECCCCCcccccCCEEEEeCCCcccCCCCCCchHHHHH
Confidence            44456778999999999999999999999999999999999999999999999999999998765433445568999999


Q ss_pred             HHHHHHHHHHHHHhhcCCChHHHhhcCCCCchhhhhhhhhhhccccCCCCccccCCCcHHHHHHHHHhcCcceEEEEcCC
Q 019775          172 QMVFGDTVAIAMMGARNLTRDEYAANHPAGRIGKSLIFKVQDVMKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEE  251 (336)
Q Consensus       172 ~~~l~d~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~  251 (336)
                      ++++.|.|+..+..+++...+++...|....+.++..++|+++|.+...++++++++++.++.+.|.+.+...+||+|++
T Consensus       165 ~~~~~dsL~~~~l~~~g~~~~~~~~~~~~~~l~~~~~~~V~dim~~~~~~~~v~~~~sl~~a~~~~~~~~~~~~vVvd~~  244 (326)
T PRK10892        165 TLVMGDALAVALLKARGFTAEDFALSHPGGALGRKLLLRVSDIMHTGDEIPHVSKTASLRDALLEITRKNLGMTVICDDN  244 (326)
T ss_pred             HHHHHHHHHHHHHHHhCCCHHHHHhcCCCchhcccccCcHHHHhCCCCCCeEECCCCCHHHHHHHHHhcCCCeEEEEcCC
Confidence            99999999999999999999999988888888777888999999972236699999999999999998888888888988


Q ss_pred             CcEEEEeeHHHHHHHHHhcCCchhhhhHhhhcCCCCeeeCCCccHHHHHHHhcCCCCCccEeEEEeCCCcEEEEEehhhH
Q 019775          252 YHLIGTFTDGDLRRTLKASGEGIFKLTVGEMCNRSPRTIGPDAMAVEAMQKMESPPSPVQFLPVINRQNILIGIVTLHGL  331 (336)
Q Consensus       252 ~~~~G~it~~dl~~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~l~Vv~~~~~~iGiit~~di  331 (336)
                      |+++|+||.+|++..... +......++.++|.+++.++.+++++.++++.|.++  +.+.+||+++ |+++|+||+.|+
T Consensus       245 g~lvGivt~~Dl~~~~~~-~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~--~~~~lpVv~~-~~lvGiit~~di  320 (326)
T PRK10892        245 MKIEGIFTDGDLRRVFDM-GIDLRQASIADVMTPGGIRVRPGILAVDALNLMQSR--HITSVLVADG-DHLLGVLHMHDL  320 (326)
T ss_pred             CcEEEEEecHHHHHHHhc-CCCcccCCHHHhcCCCCEEECCCCCHHHHHHHHHHC--CCcEEEEeeC-CEEEEEEEhHHh
Confidence            999999999999875543 211224679999999999999999999999999999  9999999986 899999999999


Q ss_pred             hhcC
Q 019775          332 VSAG  335 (336)
Q Consensus       332 ~~~~  335 (336)
                      +++|
T Consensus       321 l~~~  324 (326)
T PRK10892        321 LRAG  324 (326)
T ss_pred             Hhcc
Confidence            9986

>TIGR00393 kpsF KpsF/GutQ family protein

Probab=100.00  E-value=3.1e-41  Score=298.48  Aligned_cols=268  Identities=37%  Similarity=0.677  Sum_probs=241.7

Q ss_pred             CeEEEEeccchHHHHHHHHHHHHhcCCeeeecCCccccccccCCCCCCcEEEEEeCCCCcHHHHHHHHHHHHcCCeEEEE
Q 019775           55 GTIFFTGVGKSGFVANKISQTLISLGIKSGFLNPLDALHGDIGILSSDDILVMFSKSGNTEELLKVVPCAKAKGAYLVSV  134 (336)
Q Consensus        55 ~~I~i~G~G~s~~~a~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~dlvi~iS~sG~~~~~~~~~~~ak~~g~~vi~I  134 (336)
                      +|||++|.|.|..+|++|+++|.++|+++..+++..........++++|++|++|+||++++++++++.||++|+++|+|
T Consensus         1 ~rI~i~G~G~S~~~a~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~d~~i~iS~sG~t~~~~~~~~~a~~~g~~ii~i   80 (268)
T TIGR00393         1 GKLVIVGIGKSGLIGKKIVATFASTGTPSFFLHPTEAMHGDLGMVEPNDVVLMISYSGESLELLNLIPHLKRLSHKIIAF   80 (268)
T ss_pred             CcEEEEecChHHHHHHHHHHHHHhcCCceEEeCHhHHhhcccCCCCCCCEEEEEeCCCCCHHHHHHHHHHHHcCCcEEEE
Confidence            38999999999999999999999999999998887776666678899999999999999999999999999999999999


Q ss_pred             eCCCCCccccccCEEEEcCCCcccCCCCCCChhHHHHHHHHHHHHHHHHHhhcCCChHHHhhcCCCCchhhhhhhhhhhc
Q 019775          135 TSVEGNALAAVCDMNVHLPVERELCPFDLAPVTSTAIQMVFGDTVAIAMMGARNLTRDEYAANHPAGRIGKSLIFKVQDV  214 (336)
Q Consensus       135 T~~~~s~l~~~ad~~i~~~~~~~~~~~~~~~~~s~~~~~~l~d~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i  214 (336)
                      |++..++++++||++|.++.+.+..+....+++|..++++++|+|+..++.+++....++...|+.+.+.....++|+++
T Consensus        81 T~~~~s~l~~~~d~~l~~~~~~~~~~~~~~~~~s~~~~~~l~d~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i  160 (268)
T TIGR00393        81 TGSPNSSLARAADYVLDIKVEKEACPINLAPTTSTTLTLALGDALAVALMRARNFSQEDFASFHPGGALGRKLLVKVKDL  160 (268)
T ss_pred             ECCCCCcccccCCEEEEcCCCcccCCCCCccHHHHHHHHHHHHHHHHHHHHHHCcCHHHHhhcCCCchhhHhhhhhHHHH
Confidence            99999999999999999987654334556789999999999999999999999999999999999998887667899999


Q ss_pred             cccCCCCccccCCCcHHHHHHHHHhcCcceEEEEcCCCcEEEEeeHHHHHHHHHhcCCchhhhhHhhhcCCCCeeeCCCc
Q 019775          215 MKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRRTLKASGEGIFKLTVGEMCNRSPRTIGPDA  294 (336)
Q Consensus       215 m~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~it~~dl~~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~  294 (336)
                      |.+.. ++++++++++.++.+.|.+.+.+.+||+|++|+++|+++..|+........  ....++.++|.+++..+.+++
T Consensus       161 m~~~~-~~~v~~~~~v~~a~~~~~~~~~~~~~Vvd~~g~~~Givt~~dl~~~~~~~~--~~~~~v~~im~~~~~~v~~~~  237 (268)
T TIGR00393       161 MQTTD-LPLIAPTTSFKDALLEMSEKRLGSAIVCDENNQLVGVFTDGDLRRALLGGG--SLKSEVRDFMTLGPKTFKLDA  237 (268)
T ss_pred             hCCCC-CCcCCCCCcHHHHHHHHhhcCCcEEEEEeCCCCEEEEEEcHHHHHHHhcCC--cccCcHHHhCCCCCeEECCCC
Confidence            98862 458999999999999999888999999998899999999999988654211  124679999999899999999


Q ss_pred             cHHHHHHHhcCCCCCccEeEEEeCCCcEEEEEe
Q 019775          295 MAVEAMQKMESPPSPVQFLPVINRQNILIGIVT  327 (336)
Q Consensus       295 ~l~~~~~~~~~~~~~~~~l~Vv~~~~~~iGiit  327 (336)
                      ++.++++.|.++  +...+||+|++|+++|+|+
T Consensus       238 ~l~~a~~~m~~~--~~~~lpVvd~~g~l~GvI~  268 (268)
T TIGR00393       238 LLLEALEFLERR--KITSLVVVDDHNKVLGVLH  268 (268)
T ss_pred             cHHHHHHHHHHc--CCcEEEEECCCCeEEEEEC
Confidence            999999999999  8999999998899999985

This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli.

>COG0794 GutQ Predicted sugar phosphate isomerase involved in capsule formation [Cell envelope biogenesis, outer membrane]

Probab=99.97  E-value=4.5e-30  Score=209.27  Aligned_cols=199  Identities=35%  Similarity=0.658  Sum_probs=191.6

Q ss_pred             HHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHcCCCeEEEEeccchHHHHHHHHHHHHhcCCeeeecCCccccccccC
Q 019775           18 NTLLDLFKSQQDHLNYFFQHLSLPHTLTFTQTLLKCRGTIFFTGVGKSGFVANKISQTLISLGIKSGFLNPLDALHGDIG   97 (336)
Q Consensus        18 ~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~i~~a~~~I~i~G~G~s~~~a~~~~~~l~~~g~~~~~~~~~~~~~~~~~   97 (336)
                      +..++++..+.+.+.+..++++.++|.++++.|.++++||+++|.|.|..+|+-|+.+|...|.+++++.+.+-.+..+.
T Consensus         3 ~~a~~i~~~~~~~l~~~~~~~~~~~~~~a~~~i~~~~gkv~V~G~GkSG~Igkk~Aa~L~s~G~~a~fv~p~ea~hgdlg   82 (202)
T COG0794           3 DIAKEILMTEAEALLELAERLDDEDFVRAVELILECKGKVFVTGVGKSGLIGKKFAARLASTGTPAFFVGPAEALHGDLG   82 (202)
T ss_pred             hHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcEEEEcCChhHHHHHHHHHHHHccCCceEEecCchhccCCcc
Confidence            56788999999999999999998999999999987667999999999999999999999999999999999999999999


Q ss_pred             CCCCCcEEEEEeCCCCcHHHHHHHHHHHHcCCeEEEEeCCCCCccccccCEEEEcCCCcccCCCCCCChhHHHHHHHHHH
Q 019775           98 ILSSDDILVMFSKSGNTEELLKVVPCAKAKGAYLVSVTSVEGNALAAVCDMNVHLPVERELCPFDLAPVTSTAIQMVFGD  177 (336)
Q Consensus        98 ~~~~~dlvi~iS~sG~~~~~~~~~~~ak~~g~~vi~IT~~~~s~l~~~ad~~i~~~~~~~~~~~~~~~~~s~~~~~~l~d  177 (336)
                      .++++|++|+||.||+|.+++.+++.+|+.|+++|+||++++|+|++.||+++.+|...+.++....+++|.+.+++.-|
T Consensus        83 ~i~~~DvviaiS~SGeT~el~~~~~~aK~~g~~liaiT~~~~SsLak~aDvvl~ip~~~e~~p~~l~pt~st~~~l~~gd  162 (202)
T COG0794          83 MITPGDVVIAISGSGETKELLNLAPKAKRLGAKLIAITSNPDSSLAKAADVVLVIPVKTEACPLGLAPTTSTTLTLALGD  162 (202)
T ss_pred             CCCCCCEEEEEeCCCcHHHHHHHHHHHHHcCCcEEEEeCCCCChHHHhcCeEEEccCccccCcccCCcchhhHHHHhhcc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhcCCChHHHhhcCCCCchhhhhhhhhhhccc
Q 019775          178 TVAIAMMGARNLTRDEYAANHPAGRIGKSLIFKVQDVMK  216 (336)
Q Consensus       178 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~  216 (336)
                      .+...+++.++...+++...||.+.++..+...++++|.
T Consensus       163 al~~~L~e~~~f~~~D~~~~hp~g~lG~~l~~~v~~~~~  201 (202)
T COG0794         163 ALAGTLFEARGFSFEDFAIAHPGGALGAKLLLKVKDHMN  201 (202)
T ss_pred             HHHHHHHHHhCCCHHHHHHhCchhhhCccHHHHHHHhcc
Confidence            999999999999999999999999999999988998886

>COG1737 RpiR Transcriptional regulators [Transcription]

Probab=99.96  E-value=4.4e-28  Score=214.42  Aligned_cols=180  Identities=24%  Similarity=0.351  Sum_probs=163.9

Q ss_pred             CCCCcchHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHcCCCeEEEEeccchHHHHHHHHHHHHhcCCeeeecCCcc
Q 019775           11 LPHKVSENTLLDLFKSQQDHLNYFFQHLSLPHTLTFTQTLLKCRGTIFFTGVGKSGFVANKISQTLISLGIKSGFLNPLD   90 (336)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~i~~a~~~I~i~G~G~s~~~a~~~~~~l~~~g~~~~~~~~~~   90 (336)
                      .+++....+.+++++...+.|+.+.+.++++.+++++++|.+| +|||++|.|.|..+|.+++++|.++|+++..+.+..
T Consensus        88 ~~~~~~~~~~~~~~~~~~~~l~~t~~~l~~~~l~~av~~L~~A-~rI~~~G~g~S~~vA~~~~~~l~~ig~~~~~~~d~~  166 (281)
T COG1737          88 AEDDGPESILEKLLAANIAALERTLNLLDEEALERAVELLAKA-RRIYFFGLGSSGLVASDLAYKLMRIGLNVVALSDTH  166 (281)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHcC-CeEEEEEechhHHHHHHHHHHHHHcCCceeEecchH
Confidence            4456677799999999999999999999999999999999999 699999999999999999999999999999999877


Q ss_pred             ccccccCCCCCCcEEEEEeCCCCcHHHHHHHHHHHHcCCeEEEEeCCCCCccccccCEEEEcCCCcccCCCCCCChhHHH
Q 019775           91 ALHGDIGILSSDDILVMFSKSGNTEELLKVVPCAKAKGAYLVSVTSVEGNALAAVCDMNVHLPVERELCPFDLAPVTSTA  170 (336)
Q Consensus        91 ~~~~~~~~~~~~dlvi~iS~sG~~~~~~~~~~~ak~~g~~vi~IT~~~~s~l~~~ad~~i~~~~~~~~~~~~~~~~~s~~  170 (336)
                      .+......++++|++|+||+||++++++++++.||++|++||+||++..||+++.||+++.++...+.  ....+++|++
T Consensus       167 ~~~~~~~~~~~~Dv~i~iS~sG~t~e~i~~a~~ak~~ga~vIaiT~~~~spla~~Ad~~L~~~~~~~~--~~~~~~~s~~  244 (281)
T COG1737         167 GQLMQLALLTPGDVVIAISFSGYTREIVEAAELAKERGAKVIAITDSADSPLAKLADIVLLVPVAEES--FFRSPISSRI  244 (281)
T ss_pred             HHHHHHHhCCCCCEEEEEeCCCCcHHHHHHHHHHHHCCCcEEEEcCCCCCchhhhhceEEeccCcccc--chhhhHHHHH
Confidence            77667888999999999999999999999999999999999999999999999999999999887662  2223678999


Q ss_pred             HHHHHHHHHHHHHHhhcCCChHH
Q 019775          171 IQMVFGDTVAIAMMGARNLTRDE  193 (336)
Q Consensus       171 ~~~~l~d~l~~~~~~~~~~~~~~  193 (336)
                      ++++++|+|+..+.+..+....+
T Consensus       245 a~l~l~d~L~~~~~~~~~~~~~~  267 (281)
T COG1737         245 AQLALIDALITAVAQRRGEAALK  267 (281)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHH
Confidence            99999999999999987644433

>cd05005 SIS_PHI Hexulose-6-phosphate isomerase (PHI)

Probab=99.96  E-value=2.1e-27  Score=197.04  Aligned_cols=172  Identities=22%  Similarity=0.344  Sum_probs=153.4

Q ss_pred             HHHHHHHHHHHHHHhcCChhHHHHHHHHHHcCCCeEEEEeccchHHHHHHHHHHHHhcCCeeeecCCccccccccCCCCC
Q 019775           22 DLFKSQQDHLNYFFQHLSLPHTLTFTQTLLKCRGTIFFTGVGKSGFVANKISQTLISLGIKSGFLNPLDALHGDIGILSS  101 (336)
Q Consensus        22 ~~~~~~~~~l~~~~~~~~~~~i~~~~~~i~~a~~~I~i~G~G~s~~~a~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~  101 (336)
                      +++++...+++++.+.++.+.++++++.|.++ +|||++|.|.|..+|.+++++|.++|+++..+.+..     ...+++
T Consensus         2 ~~~~~~~~~l~~t~~~l~~~~l~~~~~~i~~a-~~I~i~G~G~S~~~A~~~~~~l~~~g~~~~~~~~~~-----~~~~~~   75 (179)
T cd05005           2 EYLSLILEEIENVADKIDEEELDKLISAILNA-KRIFVYGAGRSGLVAKAFAMRLMHLGLNVYVVGETT-----TPAIGP   75 (179)
T ss_pred             cHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhC-CeEEEEecChhHHHHHHHHHHHHhCCCeEEEeCCCC-----CCCCCC
Confidence            46788899999999999999999999999999 699999999999999999999999999999986532     356889


Q ss_pred             CcEEEEEeCCCCcHHHHHHHHHHHHcCCeEEEEeCCCCCccccccCEEEEcCCCcccCCC----CCCChhH--HHHHHHH
Q 019775          102 DDILVMFSKSGNTEELLKVVPCAKAKGAYLVSVTSVEGNALAAVCDMNVHLPVERELCPF----DLAPVTS--TAIQMVF  175 (336)
Q Consensus       102 ~dlvi~iS~sG~~~~~~~~~~~ak~~g~~vi~IT~~~~s~l~~~ad~~i~~~~~~~~~~~----~~~~~~s--~~~~~~l  175 (336)
                      +|++|+||+||++++++++++.||++|+++|+||++.++|++++||++|.+++.......    ...++.+  ..+++++
T Consensus        76 ~D~vI~iS~sG~t~~~i~~~~~ak~~g~~iI~IT~~~~s~la~~ad~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  155 (179)
T cd05005          76 GDLLIAISGSGETSSVVNAAEKAKKAGAKVVLITSNPDSPLAKLADVVVVIPAATKDDHGGEHKSIQPLGTLFEQSALVF  155 (179)
T ss_pred             CCEEEEEcCCCCcHHHHHHHHHHHHCCCeEEEEECCCCCchHHhCCEEEEeCCcccccCCCCccccccCccHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999987653221    1233444  4689999


Q ss_pred             HHHHHHHHHhhcCCChHHHhhcCC
Q 019775          176 GDTVAIAMMGARNLTRDEYAANHP  199 (336)
Q Consensus       176 ~d~l~~~~~~~~~~~~~~~~~~~~  199 (336)
                      +|+|+..+++..+..++++.++|.
T Consensus       156 ld~l~~~~~~~~~~~~~~~~~~~~  179 (179)
T cd05005         156 LDAVIAKLMEELGVSEEEMKKRHA  179 (179)
T ss_pred             HHHHHHHHHHHhCCCHHHHHHhcC
Confidence            999999999999999999999883

PHI is a member of the SIS (Sugar ISomerase domain) superfamily. In the ribulose monophosphate pathway of formaldehyde fixation, hexulose-6-phosphate synthase catalyzes the condensation of ribulose-5-phosphate with formadelhyde to become hexulose-6-phosphate, which is then isomerized to fructose-6-phosphate by PHI.

>TIGR03127 RuMP_HxlB 6-phospho 3-hexuloisomerase

Probab=99.96  E-value=2.3e-27  Score=196.96  Aligned_cols=169  Identities=23%  Similarity=0.368  Sum_probs=151.4

Q ss_pred             HHHHHHHHHHhcCChhHHHHHHHHHHcCCCeEEEEeccchHHHHHHHHHHHHhcCCeeeecCCccccccccCCCCCCcEE
Q 019775           26 SQQDHLNYFFQHLSLPHTLTFTQTLLKCRGTIFFTGVGKSGFVANKISQTLISLGIKSGFLNPLDALHGDIGILSSDDIL  105 (336)
Q Consensus        26 ~~~~~l~~~~~~~~~~~i~~~~~~i~~a~~~I~i~G~G~s~~~a~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~dlv  105 (336)
                      +..++++++.+.++.++++++++.|.++ ++||++|.|.|+.+|.+++++|.++|+++....+..     ...++++|++
T Consensus         3 ~~~~~l~~t~~~l~~~~~~~~~~~l~~a-~~I~i~G~G~S~~~A~~~~~~l~~~g~~~~~~~~~~-----~~~~~~~Dv~   76 (179)
T TIGR03127         3 LILDEISQVASRIDEEELDKLADKIIKA-KRIFVAGAGRSGLVGKAFAMRLMHLGFNVYVVGETT-----TPSIKKGDLL   76 (179)
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHhC-CEEEEEecCHHHHHHHHHHHHHHhCCCeEEEeCCcc-----cCCCCCCCEE
Confidence            4578899999999999999999999999 599999999999999999999999999999887642     3578899999


Q ss_pred             EEEeCCCCcHHHHHHHHHHHHcCCeEEEEeCCCCCccccccCEEEEcCCCcccCCCC----CCChhHHH--HHHHHHHHH
Q 019775          106 VMFSKSGNTEELLKVVPCAKAKGAYLVSVTSVEGNALAAVCDMNVHLPVERELCPFD----LAPVTSTA--IQMVFGDTV  179 (336)
Q Consensus       106 i~iS~sG~~~~~~~~~~~ak~~g~~vi~IT~~~~s~l~~~ad~~i~~~~~~~~~~~~----~~~~~s~~--~~~~l~d~l  179 (336)
                      |+||+||++++++++++.||++|+++|+||+++++|++++||++|.++.........    ..++.+.+  ++++++|+|
T Consensus        77 I~iS~sG~t~~~i~~~~~ak~~g~~ii~IT~~~~s~la~~ad~~l~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~ild~l  156 (179)
T TIGR03127        77 IAISGSGETESLVTVAKKAKEIGATVAAITTNPESTLGKLADVVVEIPAATKKDSEGNYKSIQPLGSLFEQSLLLFLDAV  156 (179)
T ss_pred             EEEeCCCCcHHHHHHHHHHHHCCCeEEEEECCCCCchHHhCCEEEEeCCccccCCCCCccccCcCchHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999876532211    34566765  779999999


Q ss_pred             HHHHHhhcCCChHHHhhcCCC
Q 019775          180 AIAMMGARNLTRDEYAANHPA  200 (336)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~  200 (336)
                      +..++++++...+++.+.|++
T Consensus       157 ~~~~~~~~~~~~~~~~~~~~~  177 (179)
T TIGR03127       157 ILKLMKKKGLDEEEMKKRHAN  177 (179)
T ss_pred             HHHHHHHhCcCHHHHHHHhcc
Confidence            999999999999999998886

Members of this protein family are 6-phospho 3-hexuloisomerase (PHI), or the PHI domain of a fusion protein. This enzyme is part of the ribulose monophosphate (RuMP) pathway, which in one direction removes the toxic metabolite formaldehyde by assimilation into fructose-6-phosphate. In the other direction, in species lacking a complete pentose phosphate pathway, the RuMP pathway yields ribulose-5-phosphate, necessary for nucleotide biosynthesis, at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin.

>PRK15482 transcriptional regulator MurR; Provisional

Probab=99.95  E-value=4.6e-27  Score=209.30  Aligned_cols=174  Identities=16%  Similarity=0.224  Sum_probs=157.0

Q ss_pred             CcchHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHcCCCeEEEEeccchHHHHHHHHHHHHhcCCeeeecCCccccc
Q 019775           14 KVSENTLLDLFKSQQDHLNYFFQHLSLPHTLTFTQTLLKCRGTIFFTGVGKSGFVANKISQTLISLGIKSGFLNPLDALH   93 (336)
Q Consensus        14 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~i~~a~~~I~i~G~G~s~~~a~~~~~~l~~~g~~~~~~~~~~~~~   93 (336)
                      ++...+.+++......+++++.+.++.+.+++++++|.+| ++||++|.|.|..+|.+|+++|.++|+++....+.+...
T Consensus        96 ~~~~~i~~~~~~~~~~~i~~t~~~id~~~l~~~~~~i~~A-~~I~i~G~G~S~~~A~~l~~~l~~~g~~~~~~~d~~~~~  174 (285)
T PRK15482         96 DSLEVIARKLNREKELALEQTCALFDYARLQKIIEVISKA-PFIQITGLGGSALVGRDLSFKLMKIGYRVACEADTHVQA  174 (285)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhC-CeeEEEEeChhHHHHHHHHHHHHhCCCeeEEeccHhHHH
Confidence            4455677777888889999999999999999999999999 699999999999999999999999999999987766665


Q ss_pred             cccCCCCCCcEEEEEeCCCCcHHHHHHHHHHHHcCCeEEEEeCCCCCccccccCEEEEcCCCcccCCCCCCChhHHHHHH
Q 019775           94 GDIGILSSDDILVMFSKSGNTEELLKVVPCAKAKGAYLVSVTSVEGNALAAVCDMNVHLPVERELCPFDLAPVTSTAIQM  173 (336)
Q Consensus        94 ~~~~~~~~~dlvi~iS~sG~~~~~~~~~~~ak~~g~~vi~IT~~~~s~l~~~ad~~i~~~~~~~~~~~~~~~~~s~~~~~  173 (336)
                      .....++++|++|+||+||++++++++++.|+++|+++|+||++..+|++++||++|.++++..  .+....++|+++++
T Consensus       175 ~~~~~~~~~Dv~i~iS~sg~t~~~~~~~~~a~~~g~~iI~IT~~~~s~la~~ad~~l~~~~~~~--~~~~~~~ss~~~~~  252 (285)
T PRK15482        175 TVSQALKKGDVQIAISYSGSKKEIVLCAEAARKQGATVIAITSLADSPLRRLAHFTLDTVSGET--EWRSSSMSTRTAQN  252 (285)
T ss_pred             HHHhcCCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCEEEEEeCCCCCchHHhCCEEEEcCCCcc--chhHHHHHHHHHHH
Confidence            5566789999999999999999999999999999999999999999999999999999988654  44556799999999


Q ss_pred             HHHHHHHHHHHhhcCCC
Q 019775          174 VFGDTVAIAMMGARNLT  190 (336)
Q Consensus       174 ~l~d~l~~~~~~~~~~~  190 (336)
                      +++|+|+..+..++...
T Consensus       253 ~~id~L~~~~~~~~~~~  269 (285)
T PRK15482        253 SVTDLLFVGLVQLNDVE  269 (285)
T ss_pred             HHHHHHHHHHHHhchHH
Confidence            99999999999987543

>PRK11557 putative DNA-binding transcriptional regulator; Provisional

Probab=99.95  E-value=1.4e-26  Score=205.75  Aligned_cols=175  Identities=23%  Similarity=0.233  Sum_probs=157.8

Q ss_pred             CcchHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHcCCCeEEEEeccchHHHHHHHHHHHHhcCCeeeecCCccccc
Q 019775           14 KVSENTLLDLFKSQQDHLNYFFQHLSLPHTLTFTQTLLKCRGTIFFTGVGKSGFVANKISQTLISLGIKSGFLNPLDALH   93 (336)
Q Consensus        14 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~i~~a~~~I~i~G~G~s~~~a~~~~~~l~~~g~~~~~~~~~~~~~   93 (336)
                      +....+.+++++...++++++++.++.+.+++++++|.++ ++||++|.|.|..+|++|+++|.++|+++....+...+.
T Consensus        89 ~~~~~~~~~~~~~~~~~l~~t~~~~~~~~l~~~~~~i~~a-~~I~i~G~G~s~~~A~~~~~~l~~~g~~~~~~~d~~~~~  167 (278)
T PRK11557         89 DPLRLVGEKLIKENTAAMRATLDVNSEEKLHECVTMLRSA-RRIILTGIGASGLVAQNFAWKLMKIGINAVAERDMHALL  167 (278)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcC-CeEEEEecChhHHHHHHHHHHHhhCCCeEEEcCChHHHH
Confidence            3344567788999999999999999999999999999999 699999999999999999999999999999887777766


Q ss_pred             cccCCCCCCcEEEEEeCCCCcHHHHHHHHHHHHcCCeEEEEeCCCCCccccccCEEEEcCCCcccCCCCCCChhHHHHHH
Q 019775           94 GDIGILSSDDILVMFSKSGNTEELLKVVPCAKAKGAYLVSVTSVEGNALAAVCDMNVHLPVERELCPFDLAPVTSTAIQM  173 (336)
Q Consensus        94 ~~~~~~~~~dlvi~iS~sG~~~~~~~~~~~ak~~g~~vi~IT~~~~s~l~~~ad~~i~~~~~~~~~~~~~~~~~s~~~~~  173 (336)
                      .....++++|++|+||++|++++++++++.||++|++||+||++..+|++++||++|.++....  .....+++|.++++
T Consensus       168 ~~~~~~~~~Dv~I~iS~sg~~~~~~~~~~~ak~~ga~iI~IT~~~~s~la~~ad~~l~~~~~~~--~~~~~~~~s~~~~~  245 (278)
T PRK11557        168 ATVQALSPDDLLLAISYSGERRELNLAADEALRVGAKVLAITGFTPNALQQRASHCLYTIAEEQ--ATRSAAISSTHAQG  245 (278)
T ss_pred             HHHHhCCCCCEEEEEcCCCCCHHHHHHHHHHHHcCCCEEEEcCCCCCchHHhCCEEEEeCCCCc--ccchHHHHHHHHHH
Confidence            6677899999999999999999999999999999999999999999999999999998876543  33456899999999


Q ss_pred             HHHHHHHHHHHhhcCCCh
Q 019775          174 VFGDTVAIAMMGARNLTR  191 (336)
Q Consensus       174 ~l~d~l~~~~~~~~~~~~  191 (336)
                      +++|+|+..+..+++...
T Consensus       246 ~l~d~L~~~~~~~~~~~~  263 (278)
T PRK11557        246 MLTDLLFMALIQQDLERA  263 (278)
T ss_pred             HHHHHHHHHHHHhHHHHH
Confidence            999999999998876443

>PRK11337 DNA-binding transcriptional repressor RpiR; Provisional

Probab=99.95  E-value=3.6e-26  Score=204.43  Aligned_cols=174  Identities=14%  Similarity=0.230  Sum_probs=158.3

Q ss_pred             CcchHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHcCCCeEEEEeccchHHHHHHHHHHHHhcCCeeeecCCccccc
Q 019775           14 KVSENTLLDLFKSQQDHLNYFFQHLSLPHTLTFTQTLLKCRGTIFFTGVGKSGFVANKISQTLISLGIKSGFLNPLDALH   93 (336)
Q Consensus        14 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~i~~a~~~I~i~G~G~s~~~a~~~~~~l~~~g~~~~~~~~~~~~~   93 (336)
                      +...++++++++.+.++++++.+.++.+.+++++++|.++ ++||++|.|.|..+|.+|+++|.++|+++..+++...+.
T Consensus       101 ~~~~~~~~~~~~~~~~~i~~t~~~l~~~~l~~~~~~i~~A-~~I~i~G~G~S~~~A~~l~~~l~~~g~~~~~~~d~~~~~  179 (292)
T PRK11337        101 DAPQDVVNKVFNTSLQAIEETQSILDVDEFHRAARFFYQA-RQRDLYGAGGSAAIARDVQHKFLRIGVRCQAYDDAHIML  179 (292)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHcC-CeEEEEEecHHHHHHHHHHHHHhhCCCeEEEcCCHHHHH
Confidence            4556888999999999999999999999999999999999 699999999999999999999999999999988877666


Q ss_pred             cccCCCCCCcEEEEEeCCCCcHHHHHHHHHHHHcCCeEEEEeCCCCCccccccCEEEEcCCCcccCCCCCCChhHHHHHH
Q 019775           94 GDIGILSSDDILVMFSKSGNTEELLKVVPCAKAKGAYLVSVTSVEGNALAAVCDMNVHLPVERELCPFDLAPVTSTAIQM  173 (336)
Q Consensus        94 ~~~~~~~~~dlvi~iS~sG~~~~~~~~~~~ak~~g~~vi~IT~~~~s~l~~~ad~~i~~~~~~~~~~~~~~~~~s~~~~~  173 (336)
                      .....++++|++|+||+||++++++++++.||++|+++|+||++.++|++++||++|.+++...  .+....++|.++++
T Consensus       180 ~~~~~~~~~Dl~I~iS~sG~t~~~~~~~~~ak~~g~~ii~IT~~~~s~la~~ad~~l~~~~~~~--~~~~~~~~s~~~~~  257 (292)
T PRK11337        180 MSAALLQEGDVVLVVSHSGRTSDVIEAVELAKKNGAKIICITNSYHSPIAKLADYVICSTAQGS--PLLGENAAARIAQL  257 (292)
T ss_pred             HHHhcCCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCeEEEEeCCCCChhHHhCCEEEEcCCCCc--ccccchHHHHHHHH
Confidence            5566789999999999999999999999999999999999999999999999999999987654  34445678999999


Q ss_pred             HHHHHHHHHHHhhcCCC
Q 019775          174 VFGDTVAIAMMGARNLT  190 (336)
Q Consensus       174 ~l~d~l~~~~~~~~~~~  190 (336)
                      +++|+|+..++.++...
T Consensus       258 ~i~d~L~~~l~~~~~~~  274 (292)
T PRK11337        258 NILDAFFVSVAQLNIEQ  274 (292)
T ss_pred             HHHHHHHHHHHHHhhHH
Confidence            99999999999887543

>PRK11302 DNA-binding transcriptional regulator HexR; Provisional

Probab=99.93  E-value=8e-25  Score=195.18  Aligned_cols=173  Identities=21%  Similarity=0.266  Sum_probs=153.3

Q ss_pred             CcchHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHcCCCeEEEEeccchHHHHHHHHHHHHhcCCeeeecCCccccc
Q 019775           14 KVSENTLLDLFKSQQDHLNYFFQHLSLPHTLTFTQTLLKCRGTIFFTGVGKSGFVANKISQTLISLGIKSGFLNPLDALH   93 (336)
Q Consensus        14 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~i~~a~~~I~i~G~G~s~~~a~~~~~~l~~~g~~~~~~~~~~~~~   93 (336)
                      +...+...++++...++++++.+.++.++++++++.|.++ ++||++|.|.|..+|.+++++|.+.|+++....+.....
T Consensus        89 ~~~~~~~~~~~~~~~~~l~~t~~~id~~~i~~~~~~i~~a-~~I~i~G~G~S~~~a~~~~~~l~~~g~~~~~~~~~~~~~  167 (284)
T PRK11302         89 DSVEAYTGKIFESAMASLDHARQSLDPSAINRAVDLLTQA-KKISFFGLGASAAVAHDAQNKFFRFNVPVVYFDDIVMQR  167 (284)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHcC-CeEEEEEcchHHHHHHHHHHHHHhcCCceEecCCHHHHH
Confidence            4456778899999999999999999999999999999999 699999999999999999999999999999887654443


Q ss_pred             cccCCCCCCcEEEEEeCCCCcHHHHHHHHHHHHcCCeEEEEeCCCCCccccccCEEEEcCCCcccCCCCCCChhHHHHHH
Q 019775           94 GDIGILSSDDILVMFSKSGNTEELLKVVPCAKAKGAYLVSVTSVEGNALAAVCDMNVHLPVERELCPFDLAPVTSTAIQM  173 (336)
Q Consensus        94 ~~~~~~~~~dlvi~iS~sG~~~~~~~~~~~ak~~g~~vi~IT~~~~s~l~~~ad~~i~~~~~~~~~~~~~~~~~s~~~~~  173 (336)
                      .....++++|++|+||+||++++++++++.||++|++||+||+ .++|++++||++|.++...+  .....+++|.++++
T Consensus       168 ~~~~~~~~~D~vI~iS~sG~t~~~~~~~~~ak~~g~~vI~IT~-~~s~l~~~ad~~l~~~~~~~--~~~~~~~~s~~~~~  244 (284)
T PRK11302        168 MSCMNSSDGDVVVLISHTGRTKSLVELAQLARENGATVIAITS-AGSPLAREATLALTLDVPED--TDIYMPMVSRIAQL  244 (284)
T ss_pred             HHHHhCCCCCEEEEEeCCCCCHHHHHHHHHHHHcCCeEEEECC-CCChhHHhCCEEEecCCCcc--chhcchHHHHHHHH
Confidence            3445678999999999999999999999999999999999998 79999999999999986543  22235788999999


Q ss_pred             HHHHHHHHHHHhhcCCC
Q 019775          174 VFGDTVAIAMMGARNLT  190 (336)
Q Consensus       174 ~l~d~l~~~~~~~~~~~  190 (336)
                      +++|+|+..+...++..
T Consensus       245 ~l~d~L~~~l~~~~~~~  261 (284)
T PRK11302        245 TVIDVLATGFTLRRGAK  261 (284)
T ss_pred             HHHHHHHHHHHHHhhHH
Confidence            99999999999887643

>cd05014 SIS_Kpsf KpsF-like protein

Probab=99.91  E-value=2e-23  Score=163.80  Aligned_cols=127  Identities=44%  Similarity=0.784  Sum_probs=116.1

Q ss_pred             CeEEEEeccchHHHHHHHHHHHHhcCCeeeecCCccccccccCCCCCCcEEEEEeCCCCcHHHHHHHHHHHHcCCeEEEE
Q 019775           55 GTIFFTGVGKSGFVANKISQTLISLGIKSGFLNPLDALHGDIGILSSDDILVMFSKSGNTEELLKVVPCAKAKGAYLVSV  134 (336)
Q Consensus        55 ~~I~i~G~G~s~~~a~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~dlvi~iS~sG~~~~~~~~~~~ak~~g~~vi~I  134 (336)
                      +|||++|.|.|+.+|++++++|.++|+++..+.+.+.+......++++|++|++|+||++++++++++.||++|+++|+|
T Consensus         1 ~~I~i~G~G~S~~~a~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~d~vi~iS~sG~t~~~~~~~~~a~~~g~~vi~i   80 (128)
T cd05014           1 GKVVVTGVGKSGHIARKIAATLSSTGTPAFFLHPTEALHGDLGMVTPGDVVIAISNSGETDELLNLLPHLKRRGAPIIAI   80 (128)
T ss_pred             CeEEEEeCcHhHHHHHHHHHHhhcCCCceEEcccchhhccccCcCCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCeEEEE
Confidence            38999999999999999999999999999999887777767778899999999999999999999999999999999999


Q ss_pred             eCCCCCccccccCEEEEcCCCcccCCCCCCChhHHHHHHHHHHHHHH
Q 019775          135 TSVEGNALAAVCDMNVHLPVERELCPFDLAPVTSTAIQMVFGDTVAI  181 (336)
Q Consensus       135 T~~~~s~l~~~ad~~i~~~~~~~~~~~~~~~~~s~~~~~~l~d~l~~  181 (336)
                      |++.++|++++||++|.++.+.+.......+++|++++++++|+|+.
T Consensus        81 T~~~~s~la~~ad~~l~~~~~~~~~~~~~~~~~s~~~~~~~~d~l~~  127 (128)
T cd05014          81 TGNPNSTLAKLSDVVLDLPVEEEACPLGLAPTTSTTAMLALGDALAV  127 (128)
T ss_pred             eCCCCCchhhhCCEEEECCCCcccccCCCCchHHHHHHHHHHHHHhh
Confidence            99999999999999999988765333455689999999999999975

KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.

>PRK14101 bifunctional glucokinase/RpiR family transcriptional regulator; Provisional

Probab=99.90  E-value=6.2e-23  Score=201.53  Aligned_cols=176  Identities=22%  Similarity=0.273  Sum_probs=155.6

Q ss_pred             CcchHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHcCCCeEEEEeccchHHHHHHHHHHHHhcCCeeeecCCccccc
Q 019775           14 KVSENTLLDLFKSQQDHLNYFFQHLSLPHTLTFTQTLLKCRGTIFFTGVGKSGFVANKISQTLISLGIKSGFLNPLDALH   93 (336)
Q Consensus        14 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~i~~a~~~I~i~G~G~s~~~a~~~~~~l~~~g~~~~~~~~~~~~~   93 (336)
                      +...+...++++...++++++.+.++.+.++++++.|.++ ++||++|.|.|+.+|.+++++|.++|+++....+.....
T Consensus       429 ~~~~~~~~~~~~~~~~~i~~t~~~id~~~l~~aa~~L~~a-~rI~i~G~G~S~~~A~~~~~~l~~lg~~~~~~~d~~~~~  507 (638)
T PRK14101        429 DTATDFGAKVLDNTVSAILQLREHLNFEHVEQAIDILNNA-RRIEFYGLGNSNIVAQDAHYKFFRFGIPTIAYGDLYMQA  507 (638)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcC-CEEEEEEccHHHHHHHHHHHHHhcCCceEEEcCCHHHHH
Confidence            3445678889999999999999999999999999999999 699999999999999999999999999999887766655


Q ss_pred             cccCCCCCCcEEEEEeCCCCcHHHHHHHHHHHHcCCeEEEEeCCCCCccccccCEEEEcCCCcccCCCCCCChhHHHHHH
Q 019775           94 GDIGILSSDDILVMFSKSGNTEELLKVVPCAKAKGAYLVSVTSVEGNALAAVCDMNVHLPVERELCPFDLAPVTSTAIQM  173 (336)
Q Consensus        94 ~~~~~~~~~dlvi~iS~sG~~~~~~~~~~~ak~~g~~vi~IT~~~~s~l~~~ad~~i~~~~~~~~~~~~~~~~~s~~~~~  173 (336)
                      .....++++|++|+||+||++++++++++.||++|++||+||+. .||++++||++|.++....  .....++.|+++++
T Consensus       508 ~~~~~l~~~DvvI~iS~sG~t~e~i~~~~~Ak~~Ga~vIaIT~~-~spLa~~aD~~L~~~~~~~--~~s~~~~~s~~~~l  584 (638)
T PRK14101        508 ASAALLGKGDVIVAVSKSGRAPELLRVLDVAMQAGAKVIAITSS-NTPLAKRATVALETDHIEM--RESQLSMISRILHL  584 (638)
T ss_pred             HHHhcCCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCeEEEEcCC-CChhHhhCCEEEEcCCccc--hhccccHHHHHHHH
Confidence            45567899999999999999999999999999999999999995 8999999999998766433  34557799999999


Q ss_pred             HHHHHHHHHHHhhc---CCChHH
Q 019775          174 VFGDTVAIAMMGAR---NLTRDE  193 (336)
Q Consensus       174 ~l~d~l~~~~~~~~---~~~~~~  193 (336)
                      +++|+|+..+..++   +....+
T Consensus       585 ~lid~L~~~l~~~~~~~~~~~~~  607 (638)
T PRK14101        585 VMIDILAVGVAIRRAAPNAELAE  607 (638)
T ss_pred             HHHHHHHHHHHHhcCCCcHHHHH
Confidence            99999999999998   544444

>PRK02947 hypothetical protein; Provisional

Probab=99.88  E-value=9.6e-22  Score=170.28  Aligned_cols=187  Identities=18%  Similarity=0.154  Sum_probs=145.5

Q ss_pred             HHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHH----HcCCCeEEEEeccchHHHHHHHHHHHH------hcCCeeee--
Q 019775           18 NTLLDLFKSQQDHLNYFFQHLSLPHTLTFTQTL----LKCRGTIFFTGVGKSGFVANKISQTLI------SLGIKSGF--   85 (336)
Q Consensus        18 ~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~i----~~a~~~I~i~G~G~s~~~a~~~~~~l~------~~g~~~~~--   85 (336)
                      +.+.++++...+.++++.+. ..+.|+++++++    .++ ++||++|.|.|..+|.+|+++|.      .++.+...  
T Consensus         2 ~~~~~~~~~~~~~l~~i~~~-~~e~i~~aa~lla~~i~~a-~~I~i~G~G~S~~vA~~~~~rlg~~~~~~~i~~~~~~~~   79 (246)
T PRK02947          2 DMIDEYFDAVIELLERVRET-QAEAIEKAADLIADSIRNG-GLIYVFGTGHSHILAEEVFYRAGGLAPVNPILEPSLMLH   79 (246)
T ss_pred             hHHHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHCC-CEEEEEcCcHHHHHHHHhccccccCcccCCCCCHHHhcc
Confidence            34667888888999888887 778888888887    456 69999999999999999999983      33444331  


Q ss_pred             -----------cCCccccccccCCCCCCcEEEEEeCCCCcHHHHHHHHHHHHcCCeEEEEeCCCC-----------Cccc
Q 019775           86 -----------LNPLDALHGDIGILSSDDILVMFSKSGNTEELLKVVPCAKAKGAYLVSVTSVEG-----------NALA  143 (336)
Q Consensus        86 -----------~~~~~~~~~~~~~~~~~dlvi~iS~sG~~~~~~~~~~~ak~~g~~vi~IT~~~~-----------s~l~  143 (336)
                                 ..+...+......++++|++|+||+||++++++++++.||++|+++|+||++..           ++|+
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~i~iS~sG~t~~~i~~~~~a~~~g~~vI~iT~~~~s~~~~~~h~~gs~l~  159 (246)
T PRK02947         80 EGAVASSYLERVEGYAKAILDRYDIRPGDVLIVVSNSGRNPVPIEMALEAKERGAKVIAVTSLAYSASVASRHSSGKRLA  159 (246)
T ss_pred             ccHHHHHHhhhcccHHHHHHHHcCCCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCEEEEEcCCcccccccccCCCcCchh
Confidence                       112233333456789999999999999999999999999999999999999984           7999


Q ss_pred             cccCEEEEcCCCccc------CCCCCCChhHHHHHHHHHHHHHHHHHhh---cCCChHHHh-hcCCCCchhhh
Q 019775          144 AVCDMNVHLPVEREL------CPFDLAPVTSTAIQMVFGDTVAIAMMGA---RNLTRDEYA-ANHPAGRIGKS  206 (336)
Q Consensus       144 ~~ad~~i~~~~~~~~------~~~~~~~~~s~~~~~~l~d~l~~~~~~~---~~~~~~~~~-~~~~~~~~~~~  206 (336)
                      ++||++|.++.....      .........|.+++++++|.|+..+.+.   ++.++..|. .+++.++-...
T Consensus       160 ~~ad~~l~~~~~~~~~~v~~e~~~~~~~~~s~~~~~~i~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~  232 (246)
T PRK02947        160 EVADVVLDNGAPKGDAVLEIPGLEAPVGPVSTVVGAAILNAIFAEVAERLVERGITPPVFLSANVDGGDEHNQ  232 (246)
T ss_pred             HhCCEEEEcCCCCCCeEEEeCCCCCCcCcHhHHHHHHHHHHHHHHHHHHHHHCCCCCCeeecCCCCCcHHHHH
Confidence            999999988774320      0133356789999999999998777655   578888886 66777754443

>cd05013 SIS_RpiR RpiR-like protein

Probab=99.88  E-value=1.2e-21  Score=155.71  Aligned_cols=137  Identities=25%  Similarity=0.340  Sum_probs=125.5

Q ss_pred             HHHHHHHHHHcCCCeEEEEeccchHHHHHHHHHHHHhcCCeeeecCCccccccccCCCCCCcEEEEEeCCCCcHHHHHHH
Q 019775           42 HTLTFTQTLLKCRGTIFFTGVGKSGFVANKISQTLISLGIKSGFLNPLDALHGDIGILSSDDILVMFSKSGNTEELLKVV  121 (336)
Q Consensus        42 ~i~~~~~~i~~a~~~I~i~G~G~s~~~a~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~dlvi~iS~sG~~~~~~~~~  121 (336)
                      +++++++.|.++ ++|+++|+|.|..+|.++++.|...|+.+..+++...........+++|++|++|.+|+++++++++
T Consensus         2 ~i~~~~~~i~~~-~~i~i~g~g~s~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iS~~g~~~~~~~~~   80 (139)
T cd05013           2 ALEKAVDLLAKA-RRIYIFGVGSSGLVAEYLAYKLLRLGKPVVLLSDPHLQLMSAANLTPGDVVIAISFSGETKETVEAA   80 (139)
T ss_pred             HHHHHHHHHHhC-CEEEEEEcCchHHHHHHHHHHHHHcCCceEEecCHHHHHHHHHcCCCCCEEEEEeCCCCCHHHHHHH
Confidence            588999999999 6999999999999999999999999999999988777766666788999999999999999999999


Q ss_pred             HHHHHcCCeEEEEeCCCCCccccccCEEEEcCCCcccCCCCCCChhHHHHHHHHHHHHHH
Q 019775          122 PCAKAKGAYLVSVTSVEGNALAAVCDMNVHLPVERELCPFDLAPVTSTAIQMVFGDTVAI  181 (336)
Q Consensus       122 ~~ak~~g~~vi~IT~~~~s~l~~~ad~~i~~~~~~~~~~~~~~~~~s~~~~~~l~d~l~~  181 (336)
                      +.++++|+++|+||++.++++++++|++|.++...+.  ....++.+.++.++++|+|+.
T Consensus        81 ~~a~~~g~~iv~iT~~~~~~l~~~~d~~i~~~~~~~~--~~~~~~~~~~~~~~~~d~l~~  138 (139)
T cd05013          81 EIAKERGAKVIAITDSANSPLAKLADIVLLVSSEEGD--FRSSAFSSRIAQLALIDALFL  138 (139)
T ss_pred             HHHHHcCCeEEEEcCCCCChhHHhcCEEEEcCCCccc--cccchHHHHHHHHHHHHHHHh
Confidence            9999999999999999999999999999999987652  334678999999999999864

RpiR contains a SIS (Sugar ISomerase) domain, which is found in many phosphosugar isomerases and phosphosugar binding proteins. In E. coli, rpiR negatively regulates the expression of rpiB gene. Both rpiB and rpiA are ribose phosphate isomerases that catalyze the reversible reactions of ribose 5-phosphate into ribulose 5-phosphate.

>PF01380 SIS: SIS domain SIS domain web page

Probab=99.86  E-value=3.5e-21  Score=151.56  Aligned_cols=129  Identities=28%  Similarity=0.364  Sum_probs=116.0

Q ss_pred             HHHcCCCeEEEEeccchHHHHHHHHHHHHhcCCeeeecCCccc-cccccCCCCCCcEEEEEeCCCCcHHHHHHHHHHHHc
Q 019775           49 TLLKCRGTIFFTGVGKSGFVANKISQTLISLGIKSGFLNPLDA-LHGDIGILSSDDILVMFSKSGNTEELLKVVPCAKAK  127 (336)
Q Consensus        49 ~i~~a~~~I~i~G~G~s~~~a~~~~~~l~~~g~~~~~~~~~~~-~~~~~~~~~~~dlvi~iS~sG~~~~~~~~~~~ak~~  127 (336)
                      .|.++ +||+++|.|.|+.+|.+++++|.++|..+....+... .......++++|++|+||++|++.++++.++.+|++
T Consensus         1 ~i~~~-~~i~i~G~G~s~~~A~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~is~sg~~~~~~~~~~~ak~~   79 (131)
T PF01380_consen    1 KIAKA-KRIYIYGSGSSYGVAQYAALKLQKLGRIVVISYEAGEFFHGPLENLDPDDLVIIISYSGETRELIELLRFAKER   79 (131)
T ss_dssp             -HTTS-SEEEEEESTHHHHHHHHHHHHHHHHHSSEEEEEEHHHHHTTGGGGCSTTEEEEEEESSSTTHHHHHHHHHHHHT
T ss_pred             CCCCC-CEEEEEEcchHHHHHHHHHHHHHHhcCcceeccchHHHhhhhcccccccceeEeeeccccchhhhhhhHHHHhc
Confidence            36788 6999999999999999999999999888877765444 565588899999999999999999999999999999


Q ss_pred             CCeEEEEeCCCCCccccccCEEEEcCCCcccCCCCCCChhHHHHHHHHHHHHHH
Q 019775          128 GAYLVSVTSVEGNALAAVCDMNVHLPVERELCPFDLAPVTSTAIQMVFGDTVAI  181 (336)
Q Consensus       128 g~~vi~IT~~~~s~l~~~ad~~i~~~~~~~~~~~~~~~~~s~~~~~~l~d~l~~  181 (336)
                      |+++|+||++.++++++++|++|.++.+.+.   ....+.+..+++++++.++.
T Consensus        80 g~~vi~iT~~~~~~l~~~ad~~l~~~~~~~~---~~~~~~s~~~~~~~~~~l~~  130 (131)
T PF01380_consen   80 GAPVILITSNSESPLARLADIVLYIPTGEES---QSASTSSFSAQLSLLDALFN  130 (131)
T ss_dssp             TSEEEEEESSTTSHHHHHSSEEEEEESSCGS---SSSHSHHHHHHHHHHHHHHH
T ss_pred             CCeEEEEeCCCCCchhhhCCEEEEecCCCcc---ccchHHHHHHHHHHHHHHHh
Confidence            9999999999999999999999999998772   55689999999999999875

; InterPro: IPR001347 The SIS (Sugar ISomerase) domain is a phosphosugar-binding domain [] found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars possibly by binding to the end-product of the pathway.; GO: 0005529 sugar binding, 0005975 carbohydrate metabolic process; PDB: 3TBF_C 2V4M_A 2ZJ4_A 2ZJ3_A 3FKJ_A 3ODP_A 3EUA_H 1VIV_A 1M3S_B 1TZB_A ....

>cd05008 SIS_GlmS_GlmD_1 SIS (Sugar ISomerase) domain repeat 1 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD)

Probab=99.86  E-value=7e-21  Score=148.85  Aligned_cols=120  Identities=26%  Similarity=0.287  Sum_probs=99.4

Q ss_pred             eEEEEeccchHHHHHHHHHHHHhcC-CeeeecCCccccccccCCCCCCcEEEEEeCCCCcHHHHHHHHHHHHcCCeEEEE
Q 019775           56 TIFFTGVGKSGFVANKISQTLISLG-IKSGFLNPLDALHGDIGILSSDDILVMFSKSGNTEELLKVVPCAKAKGAYLVSV  134 (336)
Q Consensus        56 ~I~i~G~G~s~~~a~~~~~~l~~~g-~~~~~~~~~~~~~~~~~~~~~~dlvi~iS~sG~~~~~~~~~~~ak~~g~~vi~I  134 (336)
                      |||++|.|.|+.+|.+++++|.++| +++...+ ...+......++++|++|++|+||++++++++++.||++|+++|+|
T Consensus         1 ~I~i~G~G~S~~~a~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~d~~I~iS~sG~t~e~~~~~~~a~~~g~~vi~i   79 (126)
T cd05008           1 RILIVGCGTSYHAALVAKYLLERLAGIPVEVEA-ASEFRYRRPLLDEDTLVIAISQSGETADTLAALRLAKEKGAKTVAI   79 (126)
T ss_pred             CEEEEEccHHHHHHHHHHHHHHHhcCCceEEEe-hhHhhhcCCCCCCCcEEEEEeCCcCCHHHHHHHHHHHHcCCeEEEE
Confidence            5999999999999999999999996 8888776 4444444556899999999999999999999999999999999999


Q ss_pred             eCCCCCccccccCEEEEcCCCcccCCCCCCChhHHHHHHHHH
Q 019775          135 TSVEGNALAAVCDMNVHLPVERELCPFDLAPVTSTAIQMVFG  176 (336)
Q Consensus       135 T~~~~s~l~~~ad~~i~~~~~~~~~~~~~~~~~s~~~~~~l~  176 (336)
                      |+++++|++++||++|.++.+.+........+++.+++++++
T Consensus        80 T~~~~s~la~~ad~~l~~~~~~e~~~~~~~~~~~~~~~l~l~  121 (126)
T cd05008          80 TNVVGSTLAREADYVLYLRAGPEISVAATKAFTSQLLALLLL  121 (126)
T ss_pred             ECCCCChHHHhCCEEEEecCCCcceechhhhHHHHHHHHHHH
Confidence            999999999999999999886453332224455555555443

The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont

>cd05006 SIS_GmhA Phosphoheptose isomerase is a member of the SIS (Sugar ISomerase) superfamily

Probab=99.85  E-value=9e-20  Score=150.95  Aligned_cols=139  Identities=22%  Similarity=0.348  Sum_probs=111.3

Q ss_pred             HhcCChhHHHHHHHHHHc----CCCeEEEEeccchHHHHHHHHHHHH------hcCCeeeecCC-cccccc---------
Q 019775           35 FQHLSLPHTLTFTQTLLK----CRGTIFFTGVGKSGFVANKISQTLI------SLGIKSGFLNP-LDALHG---------   94 (336)
Q Consensus        35 ~~~~~~~~i~~~~~~i~~----a~~~I~i~G~G~s~~~a~~~~~~l~------~~g~~~~~~~~-~~~~~~---------   94 (336)
                      ....+.+.++++++.+.+    + ++||++|.|.|..+|.+|+++|.      +.|+++..+++ ...+..         
T Consensus        11 ~~~~~~~~i~~a~~~i~~~i~~~-~~I~i~G~G~S~~~A~~~~~~l~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~   89 (177)
T cd05006          11 LLELLAEAIEQAAQLLAEALLNG-GKILICGNGGSAADAQHFAAELVKRFEKERPGLPAIALTTDTSILTAIANDYGYEE   89 (177)
T ss_pred             HHHhhHHHHHHHHHHHHHHHHCC-CEEEEEeCcHHHHHHHHHHHHHhchhccCCCCCceEeccCCHHHHHHHhccCCHHH
Confidence            344577888999988866    6 69999999999999999999986      35888888772 221111         


Q ss_pred             -----ccCCCCCCcEEEEEeCCCCcHHHHHHHHHHHHcCCeEEEEeCCCCCccccccCEEEEcCCCcccCCCCCCChhHH
Q 019775           95 -----DIGILSSDDILVMFSKSGNTEELLKVVPCAKAKGAYLVSVTSVEGNALAAVCDMNVHLPVERELCPFDLAPVTST  169 (336)
Q Consensus        95 -----~~~~~~~~dlvi~iS~sG~~~~~~~~~~~ak~~g~~vi~IT~~~~s~l~~~ad~~i~~~~~~~~~~~~~~~~~s~  169 (336)
                           ....++++|++|+||+||++++++++++.||++|+++|+||++.++|++++||++|.++....        -...
T Consensus        90 ~~~~~~~~~~~~~Dv~I~iS~SG~t~~~i~~~~~ak~~Ga~vI~IT~~~~s~La~~aD~~l~~~~~~~--------~~~~  161 (177)
T cd05006          90 VFSRQVEALGQPGDVLIGISTSGNSPNVLKALEAAKERGMKTIALTGRDGGKLLELADIEIHVPSDDT--------PRIQ  161 (177)
T ss_pred             HHHHHHHHhCCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCEEEEEeCCCCCchhhhCCEEEEeCCCCh--------HHHH
Confidence                 113578999999999999999999999999999999999999999999999999999987644        1144


Q ss_pred             HHHHHHHHHHHHH
Q 019775          170 AIQMVFGDTVAIA  182 (336)
Q Consensus       170 ~~~~~l~d~l~~~  182 (336)
                      -.+.++++.|...
T Consensus       162 ~~~~~~~~~~~~~  174 (177)
T cd05006         162 EVHLLIGHILCEL  174 (177)
T ss_pred             HHHHHHHHHHHHH
Confidence            5556666666544

Phosphoheptose isomerase catalyzes the isomerization of sedoheptulose 7-phosphate into D-glycero-D-mannoheptose 7-phosphate. This is the first step of the biosynthesis of gram-negative bacteria inner core lipopolysaccharide precursor, L-glycero-D-mannoheptose (Gmh).

>PRK00414 gmhA phosphoheptose isomerase; Reviewed

Probab=99.83  E-value=2.1e-19  Score=149.80  Aligned_cols=136  Identities=18%  Similarity=0.252  Sum_probs=107.4

Q ss_pred             HHHHHHHHHHHHHHHh-cCChhHHHHHHHHHHcC----CCeEEEEeccchHHHHHHHH------HHHHhcCCeeeecCCc
Q 019775           21 LDLFKSQQDHLNYFFQ-HLSLPHTLTFTQTLLKC----RGTIFFTGVGKSGFVANKIS------QTLISLGIKSGFLNPL   89 (336)
Q Consensus        21 ~~~~~~~~~~l~~~~~-~~~~~~i~~~~~~i~~a----~~~I~i~G~G~s~~~a~~~~------~~l~~~g~~~~~~~~~   89 (336)
                      ++.+....+.++...+ ....+.++++++.|.++    + ||++||.|.|..+|.+++      +++.+.|+++....+.
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~i~~a~~~i~~al~~~~-rI~i~G~G~S~~~A~~~a~~l~~~~~~~r~g~~~~~~~d~   85 (192)
T PRK00414          7 RNELNEAAETLANFLKDDANIHAIQRAAVLIADSFKAGG-KVLSCGNGGSHCDAMHFAEELTGRYRENRPGYPAIAISDV   85 (192)
T ss_pred             HHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHCCC-EEEEEeCcHHHHHHHHHHHHhcccccCCCCCceEEecCcH
Confidence            3444444444433322 12347899999998866    5 999999999999999998      5556789999887654


Q ss_pred             cccc--------------cccCCCCCCcEEEEEeCCCCcHHHHHHHHHHHHcCCeEEEEeCCCCCccccccCEEEEcCCC
Q 019775           90 DALH--------------GDIGILSSDDILVMFSKSGNTEELLKVVPCAKAKGAYLVSVTSVEGNALAAVCDMNVHLPVE  155 (336)
Q Consensus        90 ~~~~--------------~~~~~~~~~dlvi~iS~sG~~~~~~~~~~~ak~~g~~vi~IT~~~~s~l~~~ad~~i~~~~~  155 (336)
                      ....              ......+++|++|+||+||++++++++++.||++|+++|+||++.++|++++||++|.++..
T Consensus        86 ~~~~~~~~d~~~~~~~~~~~~~~~~~~Dv~I~iS~SG~t~~~i~~~~~ak~~g~~iI~iT~~~~s~l~~~ad~~l~~~~~  165 (192)
T PRK00414         86 SHLSCVSNDFGYDYVFSRYVEAVGREGDVLLGISTSGNSGNIIKAIEAARAKGMKVITLTGKDGGKMAGLADIEIRVPHF  165 (192)
T ss_pred             HHHhhhhccCCHHHHHHHHHHHhCCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCeEEEEeCCCCChhHHhCCEEEEeCCC
Confidence            2211              12334689999999999999999999999999999999999999999999999999999885


Q ss_pred             cc
Q 019775          156 RE  157 (336)
Q Consensus       156 ~~  157 (336)
                      ..
T Consensus       166 ~~  167 (192)
T PRK00414        166 GY  167 (192)
T ss_pred             CC
Confidence            33

>PRK13936 phosphoheptose isomerase; Provisional

Probab=99.83  E-value=6.9e-19  Score=147.54  Aligned_cols=157  Identities=19%  Similarity=0.253  Sum_probs=120.0

Q ss_pred             HHHHHHHHHHHHHHHhcCCh---hHHHHHHHHHHcCCCeEEEEeccchHHHHHHHHHHHH------hcCCeeeecC----
Q 019775           21 LDLFKSQQDHLNYFFQHLSL---PHTLTFTQTLLKCRGTIFFTGVGKSGFVANKISQTLI------SLGIKSGFLN----   87 (336)
Q Consensus        21 ~~~~~~~~~~l~~~~~~~~~---~~i~~~~~~i~~a~~~I~i~G~G~s~~~a~~~~~~l~------~~g~~~~~~~----   87 (336)
                      ..++....+.+....+.+.+   +.++.+++.+.++ ++|++||.|.|..+|.+++.+|.      +.|+++..+.    
T Consensus         8 ~~~~~~~~~~l~~~~~~~~~~i~~a~~~~~~~l~~a-~~I~i~G~G~S~~~A~~~~~~l~~r~~~~r~g~~~~~~~~~~~   86 (197)
T PRK13936          8 RQHFEDSIDTKQQAMEVLAPPIAQAVELMVQALLNE-GKILACGNGGSAADAQHFSAELLNRFERERPSLPAIALTTDTS   86 (197)
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHCC-CEEEEEeCcHhHHHHHHHHHHccCccCCCCccceeEecCCcHH
Confidence            34555556666555555554   6677777888899 69999999999999999999998      7899887652    


Q ss_pred             -------Cccccccc----cCCCCCCcEEEEEeCCCCcHHHHHHHHHHHHcCCeEEEEeCCCCCccccc---cCEEEEcC
Q 019775           88 -------PLDALHGD----IGILSSDDILVMFSKSGNTEELLKVVPCAKAKGAYLVSVTSVEGNALAAV---CDMNVHLP  153 (336)
Q Consensus        88 -------~~~~~~~~----~~~~~~~dlvi~iS~sG~~~~~~~~~~~ak~~g~~vi~IT~~~~s~l~~~---ad~~i~~~  153 (336)
                             +.......    ....+++|++|+||+||++++++++++.||++|+++|+||++.++|++++   ||++|.++
T Consensus        87 ~~~~~~~d~~~~~~~~~~~a~~~~~~Dv~i~iS~sG~t~~~~~~~~~ak~~g~~iI~IT~~~~s~l~~l~~~ad~~l~v~  166 (197)
T PRK13936         87 TLTAIANDYSYNEVFSKQVRALGQPGDVLLAISTSGNSANVIQAIQAAHEREMHVVALTGRDGGKMASLLLPEDVEIRVP  166 (197)
T ss_pred             HHHHHhhcCCHHHHHHHHHHHhCCCCCEEEEEeCCCCcHHHHHHHHHHHHCCCeEEEEECCCCChhhhhhccCCEEEEeC
Confidence                   11111111    24468999999999999999999999999999999999999999999995   99999998


Q ss_pred             CCcccCCCCCCChhHHHHHHHHHHHHHHHHHhh
Q 019775          154 VERELCPFDLAPVTSTAIQMVFGDTVAIAMMGA  186 (336)
Q Consensus       154 ~~~~~~~~~~~~~~s~~~~~~l~d~l~~~~~~~  186 (336)
                      ....        -...-.++++.++|...+...
T Consensus       167 ~~~~--------~~~~e~~~~~~h~l~~~v~~~  191 (197)
T PRK13936        167 AERT--------ARIQEVHLLAIHCLCDLIDSQ  191 (197)
T ss_pred             CCcH--------HHHHHHHHHHHHHHHHHHHHH
Confidence            8644        124455566677666555443

>PRK05441 murQ N-acetylmuramic acid-6-phosphate etherase; Reviewed

Probab=99.82  E-value=3.5e-19  Score=158.17  Aligned_cols=187  Identities=15%  Similarity=0.195  Sum_probs=139.2

Q ss_pred             hHHHHHHHHHHHH---HHHHHHhcCChhHHHHHHHHHHcCCCeEEEEeccchHHHH-HHHHHHHHhcCCeeee---c---
Q 019775           17 ENTLLDLFKSQQD---HLNYFFQHLSLPHTLTFTQTLLKCRGTIFFTGVGKSGFVA-NKISQTLISLGIKSGF---L---   86 (336)
Q Consensus        17 ~~~~~~~~~~~~~---~l~~~~~~~~~~~i~~~~~~i~~a~~~I~i~G~G~s~~~a-~~~~~~l~~~g~~~~~---~---   86 (336)
                      .++++.+.+....   .+......+. +.++.+++.+.+. +|||++|.|+|..+| .++...+..+|.+...   +   
T Consensus        24 ~~~~~~~~~ed~~~~~av~~~l~~I~-~av~~~~~~l~~g-grI~~~GaGtSg~la~~da~e~~~tfg~~~~~v~~iiag  101 (299)
T PRK05441         24 LEILRLINEEDKKVALAVEKALPQIA-AAVDAAAAALRQG-GRLIYIGAGTSGRLGVLDASECPPTFGVPPELVVGLIAG  101 (299)
T ss_pred             HHHHHHHHHhhHHHHHHHHHhHHHHH-HHHHHHHHHHHCC-CEEEEEcCcHHHHHHHHHHHhCcCccCCCchhceeeecC
Confidence            3444444444444   5555555554 5688888899999 599999999999999 6666677677775211   1   


Q ss_pred             ------------CCcccc---ccccCCCCCCcEEEEEeCCCCcHHHHHHHHHHHHcCCeEEEEeCCCCCccccccCEEEE
Q 019775           87 ------------NPLDAL---HGDIGILSSDDILVMFSKSGNTEELLKVVPCAKAKGAYLVSVTSVEGNALAAVCDMNVH  151 (336)
Q Consensus        87 ------------~~~~~~---~~~~~~~~~~dlvi~iS~sG~~~~~~~~~~~ak~~g~~vi~IT~~~~s~l~~~ad~~i~  151 (336)
                                  .+....   ......++++|++|++|.||++++++.+++.||++|+++|+||+++++|+++++|+.|.
T Consensus       102 G~~a~~~a~e~~ed~~~~~~~~l~~~~l~~~DvvI~IS~SG~T~~vi~al~~Ak~~Ga~tI~IT~~~~s~La~~aD~~I~  181 (299)
T PRK05441        102 GEKALTKAVEGAEDDAELGAADLKAINLTAKDVVVGIAASGRTPYVIGALEYARERGALTIGISCNPGSPLSKEADIAIE  181 (299)
T ss_pred             CcHHHHhcccccCChHHHHHHHHHhcCCCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCeEEEEECCCCChhhHhCCEEEE
Confidence                        111110   11134578999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCcccCCCCCCChhHHHHHHHHHHHHHHHHHhhcCCChHHHhhcCCCCchhhhh
Q 019775          152 LPVERELCPFDLAPVTSTAIQMVFGDTVAIAMMGARNLTRDEYAANHPAGRIGKSL  207 (336)
Q Consensus       152 ~~~~~~~~~~~~~~~~s~~~~~~l~d~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  207 (336)
                      ++++.+. ..+...+.+.+++++++|+|+..++.+.+..++.+ +-+-..++.|..
T Consensus       182 ~~~g~E~-~~~st~~~s~taqk~iLn~lst~~~~~~gkv~~n~-mvd~~~~n~kl~  235 (299)
T PRK05441        182 VVVGPEV-LTGSTRMKAGTAQKLVLNMISTGVMIRLGKVYGNL-MVDVKATNEKLV  235 (299)
T ss_pred             cCCCCcc-ccccccccchhHHHHHHHHHHHHHHHHccHHHHHH-HHHhcCCHHHHH
Confidence            9886653 33446678889999999999999999998766665 333333444443

>TIGR00441 gmhA phosphoheptose isomerase

Probab=99.82  E-value=2.9e-19  Score=144.11  Aligned_cols=130  Identities=19%  Similarity=0.280  Sum_probs=106.4

Q ss_pred             HHHHHHHHcCCCeEEEEeccchHHHHHHH------HHHHHhcCCeeeecC-Cccccc--------------cccCCCCCC
Q 019775           44 LTFTQTLLKCRGTIFFTGVGKSGFVANKI------SQTLISLGIKSGFLN-PLDALH--------------GDIGILSSD  102 (336)
Q Consensus        44 ~~~~~~i~~a~~~I~i~G~G~s~~~a~~~------~~~l~~~g~~~~~~~-~~~~~~--------------~~~~~~~~~  102 (336)
                      +.+++++.++ +||+++|.|.|..+|+++      +++|.+.|+++.... +.....              .....++++
T Consensus         2 ~~~~~~l~~a-~rI~~~G~G~S~~~A~~~a~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~   80 (154)
T TIGR00441         2 VLLADSFKAG-GKVLICGNGGSACDAQHFAAELTGRYRENRPGLPAIALSADVSHLTCVSNDYGYEDVFSRQVEALGQKG   80 (154)
T ss_pred             hHHHHHHHCC-CEEEEEeCcHHHHHHHHHHHHhhcccccCCCCceEEecCCcHHHHHHhhccCCHHHHHHHHHHHhCCCC
Confidence            5788999999 599999999999999999      467788899998876 321110              001246899


Q ss_pred             cEEEEEeCCCCcHHHHHHHHHHHHcCCeEEEEeCCCCCccccccCEEEEcCCCcccCCCCCCChhHHHHHHHHHHHHHHH
Q 019775          103 DILVMFSKSGNTEELLKVVPCAKAKGAYLVSVTSVEGNALAAVCDMNVHLPVERELCPFDLAPVTSTAIQMVFGDTVAIA  182 (336)
Q Consensus       103 dlvi~iS~sG~~~~~~~~~~~ak~~g~~vi~IT~~~~s~l~~~ad~~i~~~~~~~~~~~~~~~~~s~~~~~~l~d~l~~~  182 (336)
                      |++|+||+||++++++++++.||++|+++|+||++.++|++++||++|.++...+        --..-.+++++++|...
T Consensus        81 D~~i~iS~sG~t~~~~~~~~~a~~~g~~ii~iT~~~~s~l~~~ad~~l~~~~~~~--------~~~~~~~~~~~h~l~~~  152 (154)
T TIGR00441        81 DVLLGISTSGNSKNVLKAIEAAKDKGMKTITLAGKDGGKMAGLADIELRVPHFYT--------PRIQEIHIKVIHILCQL  152 (154)
T ss_pred             CEEEEEcCCCCCHHHHHHHHHHHHCCCEEEEEeCCCCCchhhhCCEEEEeCCCCc--------HHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999988644        12445667777776543

Involved in lipopolysaccharide biosynthesis it may have a role in virulence in Haemophilus ducreyi.

>cd05710 SIS_1 A subgroup of the SIS domain

Probab=99.81  E-value=2.9e-19  Score=138.04  Aligned_cols=100  Identities=27%  Similarity=0.315  Sum_probs=93.3

Q ss_pred             eEEEEeccchHHHHHHHHHHHHhc-CCeeeecCCccccccccCCCCCCcEEEEEeCCCCcHHHHHHHHHHHHcCCeEEEE
Q 019775           56 TIFFTGVGKSGFVANKISQTLISL-GIKSGFLNPLDALHGDIGILSSDDILVMFSKSGNTEELLKVVPCAKAKGAYLVSV  134 (336)
Q Consensus        56 ~I~i~G~G~s~~~a~~~~~~l~~~-g~~~~~~~~~~~~~~~~~~~~~~dlvi~iS~sG~~~~~~~~~~~ak~~g~~vi~I  134 (336)
                      |||++|.|.|+.+|.+++++|.++ |+++....+.+.......+++++|++|++|+||++++++++++.||++|+++|+|
T Consensus         1 ~I~i~G~G~S~~~A~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~dl~I~iS~SG~t~~~~~~~~~a~~~g~~vi~i   80 (120)
T cd05710           1 NVFFVGCGGSLADMYPAKYFLKKESKLPVFVYNAAEFLHTGPKRLTEKSVVILASHSGNTKETVAAAKFAKEKGATVIGL   80 (120)
T ss_pred             CEEEEEecHHHHHHhHHHHHHHHhcCCceEEEcHHHHhhcCcccCCCCcEEEEEeCCCCChHHHHHHHHHHHcCCeEEEE
Confidence            699999999999999999999997 7888888777766666678899999999999999999999999999999999999


Q ss_pred             eCCCCCccccccCEEEEcCCC
Q 019775          135 TSVEGNALAAVCDMNVHLPVE  155 (336)
Q Consensus       135 T~~~~s~l~~~ad~~i~~~~~  155 (336)
                      |++.++|++++||+++.++++
T Consensus        81 T~~~~s~la~~ad~~l~~~~~  101 (120)
T cd05710          81 TDDEDSPLAKLADYVIVYGFE  101 (120)
T ss_pred             ECCCCCcHHHhCCEEEEccCC
Confidence            999999999999999999887

SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.

>PRK13937 phosphoheptose isomerase; Provisional

Probab=99.81  E-value=1.4e-18  Score=144.81  Aligned_cols=136  Identities=18%  Similarity=0.249  Sum_probs=105.5

Q ss_pred             hHHHHHHHHHHcCCCeEEEEeccchHHHHHHHH------HHHHhcCCeeeecC-Cccc----------c----ccccCCC
Q 019775           41 PHTLTFTQTLLKCRGTIFFTGVGKSGFVANKIS------QTLISLGIKSGFLN-PLDA----------L----HGDIGIL   99 (336)
Q Consensus        41 ~~i~~~~~~i~~a~~~I~i~G~G~s~~~a~~~~------~~l~~~g~~~~~~~-~~~~----------~----~~~~~~~   99 (336)
                      +..+++++.|.++ +|||++|.|.|..+|.+++      +++.+.|+++..+. +...          .    ......+
T Consensus        26 ~aa~~i~~~l~~a-~rI~i~G~G~S~~~A~~~a~~~~~~~~~~r~g~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~~~~~  104 (188)
T PRK13937         26 KVAEALIEALANG-GKILLCGNGGSAADAQHIAAELVGRFKKERPALPAIALTTDTSALTAIGNDYGFERVFSRQVEALG  104 (188)
T ss_pred             HHHHHHHHHHHCC-CEEEEEeCcHhHHHHHHHHHHhhccccCCCCCcceEeccCcHHHHHHHhccCCHHHHHHHHHHhhC
Confidence            5667778888899 6999999999999887753      34456788888764 2111          0    1122357


Q ss_pred             CCCcEEEEEeCCCCcHHHHHHHHHHHHcCCeEEEEeCCCCCccccccCEEEEcCCCcccCCCCCCChhHHHHHHHHHHHH
Q 019775          100 SSDDILVMFSKSGNTEELLKVVPCAKAKGAYLVSVTSVEGNALAAVCDMNVHLPVERELCPFDLAPVTSTAIQMVFGDTV  179 (336)
Q Consensus       100 ~~~dlvi~iS~sG~~~~~~~~~~~ak~~g~~vi~IT~~~~s~l~~~ad~~i~~~~~~~~~~~~~~~~~s~~~~~~l~d~l  179 (336)
                      +++|++|++|+||++++++++++.||++|+++|+||++.++|++++||++|.++....        ....-.++++.++|
T Consensus       105 ~~~Dl~i~iS~sG~t~~~~~~~~~ak~~g~~~I~iT~~~~s~L~~~ad~~l~~~~~e~--------~~~~~~~~~~~~~l  176 (188)
T PRK13937        105 RPGDVLIGISTSGNSPNVLAALEKARELGMKTIGLTGRDGGKMKELCDHLLIVPSDDT--------PRIQEMHITIGHIL  176 (188)
T ss_pred             CCCCEEEEEeCCCCcHHHHHHHHHHHHCCCeEEEEeCCCCChhHHhCCEEEEeCCCCc--------HHHHHHHHHHHHHH
Confidence            8999999999999999999999999999999999999999999999999999988643        12334456666666


Q ss_pred             HHHHHh
Q 019775          180 AIAMMG  185 (336)
Q Consensus       180 ~~~~~~  185 (336)
                      ...+-+
T Consensus       177 ~~~~~~  182 (188)
T PRK13937        177 CDLVER  182 (188)
T ss_pred             HHHHHH
Confidence            655544

>PRK10886 DnaA initiator-associating protein DiaA; Provisional

Probab=99.80  E-value=4.6e-18  Score=141.25  Aligned_cols=137  Identities=21%  Similarity=0.299  Sum_probs=108.9

Q ss_pred             hHHHHHHHHH----HcCCCeEEEEeccchHHHHHHHHHHHH------hcCCeeeecC-Cccccccc--------------
Q 019775           41 PHTLTFTQTL----LKCRGTIFFTGVGKSGFVANKISQTLI------SLGIKSGFLN-PLDALHGD--------------   95 (336)
Q Consensus        41 ~~i~~~~~~i----~~a~~~I~i~G~G~s~~~a~~~~~~l~------~~g~~~~~~~-~~~~~~~~--------------   95 (336)
                      +.++++++.+    .++ +|||++|.|.|...|++++.+|.      +.|++++.+. +...+...              
T Consensus        25 ~~i~~a~~~l~~~l~~~-~rI~~~G~GgSa~~A~~~a~~l~~~~~~~r~gl~a~~l~~d~~~~ta~and~~~~~~f~~ql  103 (196)
T PRK10886         25 DAISRAAMTLVQSLLNG-NKILCCGNGTSAANAQHFAASMINRFETERPSLPAIALNTDNVVLTAIANDRLHDEVYAKQV  103 (196)
T ss_pred             HHHHHHHHHHHHHHHcC-CEEEEEECcHHHHHHHHHHHHHhccccccCCCcceEEecCcHHHHHHHhccccHHHHHHHHH
Confidence            5566666666    566 69999999999999999999985      6799999765 33222111              


Q ss_pred             cCCCCCCcEEEEEeCCCCcHHHHHHHHHHHHcCCeEEEEeCCCCCccccc---cCEEEEcCCCcccCCCCCCChhHHHHH
Q 019775           96 IGILSSDDILVMFSKSGNTEELLKVVPCAKAKGAYLVSVTSVEGNALAAV---CDMNVHLPVERELCPFDLAPVTSTAIQ  172 (336)
Q Consensus        96 ~~~~~~~dlvi~iS~sG~~~~~~~~~~~ak~~g~~vi~IT~~~~s~l~~~---ad~~i~~~~~~~~~~~~~~~~~s~~~~  172 (336)
                      ....+++|++|+||.||++++++++++.||++|+++|+||++.++|++++   +|+++.+|....        -...-.+
T Consensus       104 ~~~~~~gDvli~iS~SG~s~~v~~a~~~Ak~~G~~vI~IT~~~~s~l~~l~~~~D~~i~ip~~~~--------~~v~e~h  175 (196)
T PRK10886        104 RALGHAGDVLLAISTRGNSRDIVKAVEAAVTRDMTIVALTGYDGGELAGLLGPQDVEIRIPSHRS--------ARIQEMH  175 (196)
T ss_pred             HHcCCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCEEEEEeCCCCChhhhccccCCEEEEcCCCch--------HHHHHHH
Confidence            23378999999999999999999999999999999999999999999997   799999998643        1244556


Q ss_pred             HHHHHHHHHHHHhh
Q 019775          173 MVFGDTVAIAMMGA  186 (336)
Q Consensus       173 ~~l~d~l~~~~~~~  186 (336)
                      +++.++|...+-+.
T Consensus       176 ~~i~H~l~~~v~~~  189 (196)
T PRK10886        176 MLTVNCLCDLIDNT  189 (196)
T ss_pred             HHHHHHHHHHHHHH
Confidence            67777776665433

>PRK13938 phosphoheptose isomerase; Provisional

Probab=99.80  E-value=4.1e-18  Score=141.69  Aligned_cols=136  Identities=21%  Similarity=0.262  Sum_probs=107.3

Q ss_pred             hHHHHHHHH----HHcCCCeEEEEeccchHHHHHHHHHHHH--------hcCCeeeecCCcccc-------------ccc
Q 019775           41 PHTLTFTQT----LLKCRGTIFFTGVGKSGFVANKISQTLI--------SLGIKSGFLNPLDAL-------------HGD   95 (336)
Q Consensus        41 ~~i~~~~~~----i~~a~~~I~i~G~G~s~~~a~~~~~~l~--------~~g~~~~~~~~~~~~-------------~~~   95 (336)
                      +.++++++.    +.+. +|||++|.|.|..+|.+|+.+|.        ++|..+...++....             ...
T Consensus        29 ~~~~~~a~~~~~~l~~g-~rI~i~G~G~S~~~A~~fa~~L~~~~~~~r~~lg~~~l~~~~~~~~a~~nd~~~~~~~~~~~  107 (196)
T PRK13938         29 EAARAIGDRLIAGYRAG-ARVFMCGNGGSAADAQHFAAELTGHLIFDRPPLGAEALHANSSHLTAVANDYDYDTVFARAL  107 (196)
T ss_pred             HHHHHHHHHHHHHHHCC-CEEEEEeCcHHHHHHHHHHHHcCCCccCCcCccceEEEeCChHHHHHhhccccHHHHHHHHH
Confidence            455555555    6677 69999999999999999999997        455555554443321             222


Q ss_pred             cCCCCCCcEEEEEeCCCCcHHHHHHHHHHHHcCCeEEEEeCCCCCccccccCEEEEcCCCcccCCCCCCChhHHHHHHHH
Q 019775           96 IGILSSDDILVMFSKSGNTEELLKVVPCAKAKGAYLVSVTSVEGNALAAVCDMNVHLPVERELCPFDLAPVTSTAIQMVF  175 (336)
Q Consensus        96 ~~~~~~~dlvi~iS~sG~~~~~~~~~~~ak~~g~~vi~IT~~~~s~l~~~ad~~i~~~~~~~~~~~~~~~~~s~~~~~~l  175 (336)
                      ....+++|++|+||+||++++++++++.||++|+++|+||++.++|++++||++|.++....        -...-.++++
T Consensus       108 ~~~~~~~DllI~iS~SG~t~~vi~a~~~Ak~~G~~vI~iT~~~~s~La~~aD~~l~v~~~e~--------~~v~e~h~~~  179 (196)
T PRK13938        108 EGSARPGDTLFAISTSGNSMSVLRAAKTARELGVTVVAMTGESGGQLAEFADFLINVPSRDT--------GRIQESHIVF  179 (196)
T ss_pred             HhcCCCCCEEEEEcCCCCCHHHHHHHHHHHHCCCEEEEEeCCCCChhhhhCCEEEEeCCCch--------hhHHHHHHHH
Confidence            45689999999999999999999999999999999999999999999999999999988643        1244566777


Q ss_pred             HHHHHHHHHh
Q 019775          176 GDTVAIAMMG  185 (336)
Q Consensus       176 ~d~l~~~~~~  185 (336)
                      +++|...+-+
T Consensus       180 ~h~l~~~v~~  189 (196)
T PRK13938        180 IHAISEHVEH  189 (196)
T ss_pred             HHHHHHHHHH
Confidence            7777666543

>cd05007 SIS_Etherase N-acetylmuramic acid 6-phosphate etherase

Probab=99.80  E-value=3e-18  Score=149.22  Aligned_cols=217  Identities=17%  Similarity=0.124  Sum_probs=147.6

Q ss_pred             cchHHHHHHHHHHHHHHHHHHhcCC--hhHHHHHHHHHHcCCCeEEEEeccchHHHHHH-HHHHHHhcCCee-----eec
Q 019775           15 VSENTLLDLFKSQQDHLNYFFQHLS--LPHTLTFTQTLLKCRGTIFFTGVGKSGFVANK-ISQTLISLGIKS-----GFL   86 (336)
Q Consensus        15 ~~~~~~~~~~~~~~~~l~~~~~~~~--~~~i~~~~~~i~~a~~~I~i~G~G~s~~~a~~-~~~~l~~~g~~~-----~~~   86 (336)
                      +..++.+.+.+.+....+.+.+.++  .+.++.+++.+.+. +|||++|.|+|..+|.. ....+..+|.+.     +..
T Consensus         9 ~~~~~~~~~~~~~~~~~~av~~~l~~I~~av~~~~~~l~~g-grl~~~GaGtSg~la~~da~e~~~tfg~~~~~v~~~ia   87 (257)
T cd05007           9 STLEILRLLNEEDKKVAAAVEAALPQIARAVDAAAERLRAG-GRLIYVGAGTSGRLGVLDASELPPTFGTPPERVVGLIA   87 (257)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC-CEEEEEcCcHHHHHHHHHHHhccccccCCcccceEEEe
Confidence            3445555555555555544444443  25677777778888 69999999999988854 334444555522     111


Q ss_pred             CCcc----------------ccccccCCCCCCcEEEEEeCCCCcHHHHHHHHHHHHcCCeEEEEeCCCCCccccccCEEE
Q 019775           87 NPLD----------------ALHGDIGILSSDDILVMFSKSGNTEELLKVVPCAKAKGAYLVSVTSVEGNALAAVCDMNV  150 (336)
Q Consensus        87 ~~~~----------------~~~~~~~~~~~~dlvi~iS~sG~~~~~~~~~~~ak~~g~~vi~IT~~~~s~l~~~ad~~i  150 (336)
                      .+..                ........++++|++|+||.||++++++.+++.||++|+++|+||+++++|+++++|++|
T Consensus        88 gg~~a~~~a~~~~edd~~~~~~~l~a~~l~~~DvvI~IS~SG~T~~vi~al~~Ak~~Ga~~I~It~~~~s~L~~~aD~~I  167 (257)
T cd05007          88 GGEPALTRAVEGAEDDEEAGAADLQAINLTERDVVIGIAASGRTPYVLGALRYARARGALTIGIACNPGSPLLQLADIAI  167 (257)
T ss_pred             CCHHHHHhhccccCChHHHHHHHHHHcCCCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCeEEEEECCCCChhHHhCCEEE
Confidence            1100                111123456899999999999999999999999999999999999999999999999999


Q ss_pred             EcCCCcccCCCCCCChhHHHHHHHHHHHHHHHHHhhcCCChHHHhhcCCCCchhhhhhhhhhhccccCCCCccccCCCcH
Q 019775          151 HLPVERELCPFDLAPVTSTAIQMVFGDTVAIAMMGARNLTRDEYAANHPAGRIGKSLIFKVQDVMKPQKELPVCKEGDLI  230 (336)
Q Consensus       151 ~~~~~~~~~~~~~~~~~s~~~~~~l~d~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~~~~~~~v  230 (336)
                      .++++.+. ..+...+++.+++.+++|+|+..++.+.+..+..+ +-+-...+.|.....++=+|.-        .+.+-
T Consensus       168 ~~~~g~E~-~~~st~~~s~~aqk~vLn~L~t~~~~~~g~v~~n~-mvd~~~~n~kl~~ra~~i~~~~--------~~~~~  237 (257)
T cd05007         168 ALITGPEV-VAGSTRLKAGTAQKLALNMLSTAVMIRLGKVYGNL-MVDVRATNEKLRERAIRIVMEA--------TGVSR  237 (257)
T ss_pred             EcCCCCcc-ccCccccccHHHHHHHHHHHHHHHHHHcchHHHHH-HHHhhcCHHHHHHHHHHHHHHH--------HCcCH
Confidence            99887653 23446678899999999999999999988666554 2233334555433333322221        22344


Q ss_pred             HHHHHHHHhcCc
Q 019775          231 MDQLVELTSKGC  242 (336)
Q Consensus       231 ~~~~~~~~~~~~  242 (336)
                      .++.+.+.+.++
T Consensus       238 ~~a~~~l~~~~~  249 (257)
T cd05007         238 DEAEAALEQAGG  249 (257)
T ss_pred             HHHHHHHHHhCC
Confidence            666776665543

Members of this family contain the SIS (Sugar ISomerase) domain. The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. The bacterial cell wall sugar N-acetylmuramic acid carries a unique D-lactyl ether substituent at the C3 position. The etherase catalyzes the cleavage of the lactyl ether bond of N-acetylmuramic acid 6-phosphate.

>PRK00331 glucosamine--fructose-6-phosphate aminotransferase; Reviewed

Probab=99.80  E-value=1.8e-18  Score=169.38  Aligned_cols=173  Identities=19%  Similarity=0.171  Sum_probs=142.1

Q ss_pred             CCCCcchHHHHHHHHHHHHHHHHHHhcCCh--hHHHHHHHHHHcCCCeEEEEeccchHHHHHHHHHHHHhc-CCeeeecC
Q 019775           11 LPHKVSENTLLDLFKSQQDHLNYFFQHLSL--PHTLTFTQTLLKCRGTIFFTGVGKSGFVANKISQTLISL-GIKSGFLN   87 (336)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~i~~~~~~i~~a~~~I~i~G~G~s~~~a~~~~~~l~~~-g~~~~~~~   87 (336)
                      +.+...++.+.+.+.++.+.++++.+....  ..++..++.+.++ ++||++|+|+|+.+|..+.+.+.++ +..+....
T Consensus       245 ~~~~~~~~~m~~eI~eqP~~l~~~~~~~~~~~~~~~~~~~~l~~a-~~I~~~G~GsS~~aa~~a~~~~~~~~~~~~~~~~  323 (604)
T PRK00331        245 AEKGGYRHFMLKEIYEQPEAIRDTLEGRLDELGEGELADEDLKKI-DRIYIVACGTSYHAGLVAKYLIESLAGIPVEVEI  323 (604)
T ss_pred             hccCCCchHHHHHHHHHHHHHHHHHHhhhccccchhhhHHHHhcC-CEEEEEEeecHHHHHHHHHHHHHHHcCCCEEEEe
Confidence            445677888999999999999999876432  3566668889999 6999999999999999988888876 55555443


Q ss_pred             CccccccccCCCCCCcEEEEEeCCCCcHHHHHHHHHHHHcCCeEEEEeCCCCCccccccCEEEEcCCCcccCCCCCCChh
Q 019775           88 PLDALHGDIGILSSDDILVMFSKSGNTEELLKVVPCAKAKGAYLVSVTSVEGNALAAVCDMNVHLPVERELCPFDLAPVT  167 (336)
Q Consensus        88 ~~~~~~~~~~~~~~~dlvi~iS~sG~~~~~~~~~~~ak~~g~~vi~IT~~~~s~l~~~ad~~i~~~~~~~~~~~~~~~~~  167 (336)
                      . ..+......++++|++|++|+||+|++++++++.||++|+++|+||++.+|||+++||++|.++.+.+   .....+.
T Consensus       324 ~-~~~~~~~~~~~~~dlvI~iS~SG~T~e~i~a~~~ak~~ga~~IaIT~~~~S~La~~aD~~l~~~~~~e---~~~~~tk  399 (604)
T PRK00331        324 A-SEFRYRDPVLSPKTLVIAISQSGETADTLAALRLAKELGAKTLAICNVPGSTIARESDAVLYTHAGPE---IGVASTK  399 (604)
T ss_pred             h-hhhhccCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHCCCCEEEEECCCCChhHHhcCcEEEecCcCc---cchhhhH
Confidence            3 33333455678999999999999999999999999999999999999999999999999999987654   3335677


Q ss_pred             HHHHHHHHHHHHHHHHHhhcC
Q 019775          168 STAIQMVFGDTVAIAMMGARN  188 (336)
Q Consensus       168 s~~~~~~l~d~l~~~~~~~~~  188 (336)
                      +.++++.++.+|...+....+
T Consensus       400 s~~s~l~~l~lL~~~~~~~~g  420 (604)
T PRK00331        400 AFTAQLAVLYLLALALAKARG  420 (604)
T ss_pred             HHHHHHHHHHHHHHHHHHHcC
Confidence            889999999999888887654

>TIGR00274 N-acetylmuramic acid 6-phosphate etherase

Probab=99.80  E-value=2.5e-18  Score=151.70  Aligned_cols=188  Identities=15%  Similarity=0.133  Sum_probs=132.2

Q ss_pred             chHHHHHHHHHHHHHHHHHHhcCC--hhHHHHHHHHHHcCCCeEEEEeccchHHH-HHHHHHHHHhcCCeeeec------
Q 019775           16 SENTLLDLFKSQQDHLNYFFQHLS--LPHTLTFTQTLLKCRGTIFFTGVGKSGFV-ANKISQTLISLGIKSGFL------   86 (336)
Q Consensus        16 ~~~~~~~~~~~~~~~l~~~~~~~~--~~~i~~~~~~i~~a~~~I~i~G~G~s~~~-a~~~~~~l~~~g~~~~~~------   86 (336)
                      ..++++.+.+........+...++  .+.++.+++.+.+. +|||++|.|.|..+ +.+....+..+|.+...+      
T Consensus        18 ~~~~~~~~~~~d~~~~~av~~~l~~I~~av~~~~~~l~~g-Grl~~~G~G~Sg~l~~~DA~e~~~t~g~~~~~~~~~iaG   96 (291)
T TIGR00274        18 TLEIVRLINEEDKLVPLAIESVLPDIAAAVEQIVQAFQQG-GRLIYIGAGTSGRLGVLDASECPPTFGVSPELVKGIIAG   96 (291)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CEEEEECCcHHHHHHHHHHHHhhhhcCCCHHHhhHHhcC
Confidence            334444444444444444444332  14556666677777 69999999999976 445555555556544321      


Q ss_pred             ------------CCcc---ccccccCCCCCCcEEEEEeCCCCcHHHHHHHHHHHHcCCeEEEEeCCCCCccccccCEEEE
Q 019775           87 ------------NPLD---ALHGDIGILSSDDILVMFSKSGNTEELLKVVPCAKAKGAYLVSVTSVEGNALAAVCDMNVH  151 (336)
Q Consensus        87 ------------~~~~---~~~~~~~~~~~~dlvi~iS~sG~~~~~~~~~~~ak~~g~~vi~IT~~~~s~l~~~ad~~i~  151 (336)
                                  .+..   ........++++|++|+||.||++++++.+++.||++|+++|+||+++++++++++|+.|.
T Consensus        97 g~~a~~~~~e~~Ed~~~~~~~dl~~~~l~~~DvvI~IS~SG~T~~vi~al~~Ak~~Ga~tIaIT~~~~s~La~~aD~~I~  176 (291)
T TIGR00274        97 GECAILHAVEGAEDSTEAGANDLQNIHLTKNDVVVGIAASGRTPYVIAGLQYARSLGALTISIACNPKSAASEIADIAIE  176 (291)
T ss_pred             ChHHHhccchhhhcchHHHHHHHHhcCCCCCCEEEEEeCCCCcHHHHHHHHHHHHCCCeEEEEECCCCChhHHhCCEEEe
Confidence                        0000   0111223588999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCcccCCCCCCChhHHHHHHHHHHHHHHHHHhhcCCChHHHhhcCCCCchhhh
Q 019775          152 LPVERELCPFDLAPVTSTAIQMVFGDTVAIAMMGARNLTRDEYAANHPAGRIGKS  206 (336)
Q Consensus       152 ~~~~~~~~~~~~~~~~s~~~~~~l~d~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  206 (336)
                      ++++.|. ..+...++|.+++++++|+|+..++.+.+..++-+ +-+-...+.|.
T Consensus       177 ~~~g~E~-~~~st~~~s~~aqk~iLd~L~t~~~~~~gk~~~n~-mvd~~~~N~kl  229 (291)
T TIGR00274       177 TIVGPEI-LTGSSRLKAGTAQKMVLNMLSTASMIKLGKVYENL-MVDVQASNEKL  229 (291)
T ss_pred             cCCCCcc-ccccchhhHHHHHHHHHHHHHHHHHHhcchhhcCe-EEeeecccHHH
Confidence            8776553 34557789999999999999999999987554443 22333344443

This protein, MurQ, is involved in recycling components of the bacterial murein sacculus turned over during cell growth. The cell wall metabolite anhydro-N-acetylmuramic acid (anhMurNAc) is converted by a kinase, AnmK, to MurNAc-phosphate, then converted to N-acetylglucosamine-phosphate by this etherase, called MurQ. This family of proteins is similar to the C-terminal half of a number of vertebrate glucokinase regulator proteins and contains a Prosite pattern which is shared by this group of proteins in a region of local similarity.

>PRK11382 frlB fructoselysine-6-P-deglycase; Provisional

Probab=99.78  E-value=6.4e-18  Score=153.78  Aligned_cols=135  Identities=13%  Similarity=0.181  Sum_probs=116.0

Q ss_pred             HHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHc--CCCeEEEEeccchHHHHHHHHHHHHhc-CCeeeecCCcccccccc
Q 019775           20 LLDLFKSQQDHLNYFFQHLSLPHTLTFTQTLLK--CRGTIFFTGVGKSGFVANKISQTLISL-GIKSGFLNPLDALHGDI   96 (336)
Q Consensus        20 ~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~i~~--a~~~I~i~G~G~s~~~a~~~~~~l~~~-g~~~~~~~~~~~~~~~~   96 (336)
                      +....+.+.+.+++.+++-. +.++++++.+.+  + ++|+++|+|+|+..|..+.+.|.++ ++++...++.+......
T Consensus        10 ~~~~~~~~~~~~~~~l~~~~-~~l~~~~~~l~~~~~-~~I~~~g~GsS~~aa~~~~~~~~k~~~i~v~~~~~~~~~~~~~   87 (340)
T PRK11382         10 DFLVTENMVQEVEKVLSHDV-PLVHAIVEEMVKRDI-DRIYFVACGSPLNAAQTAKHLADRFSDLQVYAISGWEFCDNTP   87 (340)
T ss_pred             HHHHHhhchHHHHHHHHhhh-HHHHHHHHHHHhCCC-CEEEEEEechHHHHHHHHHHHHHHHcCCCeEEeccHHHHhcCC
Confidence            44556777777777776665 668899999875  7 6999999999999999999888776 55777777777765555


Q ss_pred             CCCCCCcEEEEEeCCCCcHHHHHHHHHHHHcCCeEEEEeCCCCCccccccCEEEEcCCCc
Q 019775           97 GILSSDDILVMFSKSGNTEELLKVVPCAKAKGAYLVSVTSVEGNALAAVCDMNVHLPVER  156 (336)
Q Consensus        97 ~~~~~~dlvi~iS~sG~~~~~~~~~~~ak~~g~~vi~IT~~~~s~l~~~ad~~i~~~~~~  156 (336)
                      ..++++|++|++|+||+|.+++++++.||++|+++|+||++.+|||+++||+++.+.++.
T Consensus        88 ~~~~~~~lvI~iS~SGeT~e~i~al~~ak~~Ga~~I~IT~~~~S~L~~~ad~~l~~~ag~  147 (340)
T PRK11382         88 YRLDDRCAVIGVSDYGKTEEVIKALELGRACGALTAAFTKRADSPITSAAEFSIDYQADC  147 (340)
T ss_pred             cCCCCCCEEEEEcCCCCCHHHHHHHHHHHHcCCeEEEEECCCCChHHHhCCEEEEeCCCc
Confidence            568899999999999999999999999999999999999999999999999999998653

>TIGR01135 glmS glucosamine--fructose-6-phosphate aminotransferase (isomerizing)

Probab=99.77  E-value=1.2e-17  Score=163.70  Aligned_cols=234  Identities=16%  Similarity=0.134  Sum_probs=162.6

Q ss_pred             CCCcchHHHHHHHHHHHHHHHHHHhcCC-h--hHHHHH--HHHHHcCCCeEEEEeccchHHHHHHHHHHHHhc-CCeeee
Q 019775           12 PHKVSENTLLDLFKSQQDHLNYFFQHLS-L--PHTLTF--TQTLLKCRGTIFFTGVGKSGFVANKISQTLISL-GIKSGF   85 (336)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~--~~i~~~--~~~i~~a~~~I~i~G~G~s~~~a~~~~~~l~~~-g~~~~~   85 (336)
                      .+...++.+.+.+.++.+.++++.+... .  ..++.+  .+.+.++ ++||++|+|+|+.++..+.+.+.++ +..+..
T Consensus       245 ~~~~~~~~m~~eI~eqP~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~-~~I~~~G~GsS~~aa~~a~~~~~~~~~i~~~~  323 (607)
T TIGR01135       245 EKGGYRHFMLKEIYEQPRALRDTLEGRISEAGVVLEELGAEELLKNV-DRIQIVACGTSYHAGLVAKYLIERLAGIPVEV  323 (607)
T ss_pred             hcCCchhHHHHHHHHHHHHHHHHHHHhhhhcccchhhccchhHhccC-CEEEEEEeechHHHHHHHHHHHHHhcCCCEEE
Confidence            3466788888999999999998886522 1  123333  2457788 6999999999988887777776655 555555


Q ss_pred             cCCccccccccCCCCCCcEEEEEeCCCCcHHHHHHHHHHHHcCCeEEEEeCCCCCccccccCEEEEcCCCcccCCCCCCC
Q 019775           86 LNPLDALHGDIGILSSDDILVMFSKSGNTEELLKVVPCAKAKGAYLVSVTSVEGNALAAVCDMNVHLPVERELCPFDLAP  165 (336)
Q Consensus        86 ~~~~~~~~~~~~~~~~~dlvi~iS~sG~~~~~~~~~~~ak~~g~~vi~IT~~~~s~l~~~ad~~i~~~~~~~~~~~~~~~  165 (336)
                      ....+ +......++++|++|+||+||+|++++++++.||++|+++|+||++.+|||+++||++|.++.+.+   .....
T Consensus       324 ~~~~~-~~~~~~~~~~~dlvI~iS~SG~T~e~v~a~~~ak~~ga~~IaIT~~~~S~La~~ad~~l~~~~~~e---~~~~~  399 (607)
T TIGR01135       324 EIASE-FRYRKPVVDKDTLVIAISQSGETADTLAALRLAKELGAKTLGICNVPGSTLVRESDHTLYTRAGPE---IGVAS  399 (607)
T ss_pred             ecHHH-HhhcCCCCCCCCEEEEEeCCCCCHHHHHHHHHHHHcCCcEEEEECCCCChHHhhcCceEEecCCCc---cchhh
Confidence            44332 233445678999999999999999999999999999999999999999999999999999987654   33345


Q ss_pred             hhHHHHHHHHHHHHHHHHHhhcCC-ChHHHhhcCCCCchhhhhhhhhhhccccCCCCccccCCCcHHHHHHHHHhcCcce
Q 019775          166 VTSTAIQMVFGDTVAIAMMGARNL-TRDEYAANHPAGRIGKSLIFKVQDVMKPQKELPVCKEGDLIMDQLVELTSKGCGC  244 (336)
Q Consensus       166 ~~s~~~~~~l~d~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  244 (336)
                      +.+.+++++++++|+..+...++. ..+++.+..  ..+.     .+.+.+..     .+..+..+.+..+.+.  +.+.
T Consensus       400 tks~~s~l~~l~lL~~~l~~~~g~~~~~~~~~~~--~~l~-----~l~~~~~~-----~~~~~~~~~~~a~~l~--~~~~  465 (607)
T TIGR01135       400 TKAFTTQLTVLYLLALKLAKARGTLSAEEEAELV--DGLR-----RLPALVEQ-----VLKLEESIAELAERYA--DKHN  465 (607)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH--HHHH-----HHHHHHHH-----HHhCcHHHHHHHHHhh--CCCc
Confidence            779999999999999999887652 223221110  0111     11111111     1222222444444443  3456


Q ss_pred             EEEEcCCCcEEEEeeHHHHHH
Q 019775          245 LLVIDEEYHLIGTFTDGDLRR  265 (336)
Q Consensus       245 ipVvd~~~~~~G~it~~dl~~  265 (336)
                      +.++.. |-..|+..+..|.-
T Consensus       466 ~~~lG~-G~~~g~A~E~aLKl  485 (607)
T TIGR01135       466 FLFLGR-GLGYPIALEGALKL  485 (607)
T ss_pred             EEEEeC-CCCHHHHHHHHHHH
Confidence            788874 66778888888743

The member from Methanococcus jannaschii contains an intein.

>PTZ00295 glucosamine-fructose-6-phosphate aminotransferase; Provisional

Probab=99.76  E-value=3.1e-17  Score=161.18  Aligned_cols=164  Identities=17%  Similarity=0.140  Sum_probs=127.1

Q ss_pred             cCCCCcchHHHHHHHHHHHHHHHHHHhcCC----------hhHHHHHHHHHHcCCCeEEEEeccchHHHHHHHHHHHHhc
Q 019775           10 LLPHKVSENTLLDLFKSQQDHLNYFFQHLS----------LPHTLTFTQTLLKCRGTIFFTGVGKSGFVANKISQTLISL   79 (336)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----------~~~i~~~~~~i~~a~~~I~i~G~G~s~~~a~~~~~~l~~~   79 (336)
                      ..++...++.+.+.+.++.+.++++.++..          ...++++++.+.++ ++|+++|+|+|+.+|.++++.|.++
T Consensus       269 ~~~k~~~~~~m~kEI~EqP~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~I~i~g~GsS~~aa~~~~~~l~~~  347 (640)
T PTZ00295        269 EKSPEPYPHWTLKEIFEQPIALSRALNNGGRLSGYNNRVKLGGLDQYLEELLNI-KNLILVGCGTSYYAALFAASIMQKL  347 (640)
T ss_pred             hhcCCCchHHHHHHHHHHHHHHHHHhhcccceeccCCccchhhhHHHHHHHhcC-CEEEEEEeehHHHHHHHHHHHHHHh
Confidence            345567788999999999999999983221          12366777888899 6999999999999999999999998


Q ss_pred             CCe--eeecCCccccccccCCCCCCcEEEEEeCCCCcHHHHHHHHHHHHcCCeEEEEeCCCCCccccccCEEEEcCCCcc
Q 019775           80 GIK--SGFLNPLDALHGDIGILSSDDILVMFSKSGNTEELLKVVPCAKAKGAYLVSVTSVEGNALAAVCDMNVHLPVERE  157 (336)
Q Consensus        80 g~~--~~~~~~~~~~~~~~~~~~~~dlvi~iS~sG~~~~~~~~~~~ak~~g~~vi~IT~~~~s~l~~~ad~~i~~~~~~~  157 (336)
                      +..  +....+.....  ....+++|++|++|+||+|.+++++++.||++|+++|+||++.+|+|+++||++|.++++.+
T Consensus       348 ~~~~~v~~~~~s~~~~--~~~~~~~~lvI~ISqSGeT~d~i~al~~ak~~Ga~~IaITn~~~S~La~~ad~~l~~~ag~E  425 (640)
T PTZ00295        348 KCFNTVQVIDASELTL--YRLPDEDAGVIFISQSGETLDVVRALNLADELNLPKISVVNTVGSLIARSTDCGVYLNAGRE  425 (640)
T ss_pred             CCCCceEEechHHhhh--hccCCCCCEEEEEeCCCCcHHHHHHHHHHHHCCCCEEEEECCCCChhHHhcCEEEEeCCcCc
Confidence            553  44444333332  22456899999999999999999999999999999999999999999999999999987655


Q ss_pred             cCCCCCCChhHHHHHHHHH
Q 019775          158 LCPFDLAPVTSTAIQMVFG  176 (336)
Q Consensus       158 ~~~~~~~~~~s~~~~~~l~  176 (336)
                      ........+++.+..++++
T Consensus       426 ~~v~~Tk~~ts~l~~l~ll  444 (640)
T PTZ00295        426 VAVASTKAFTSQVTVLSLI  444 (640)
T ss_pred             ccccccccHHHHHHHHHHH
Confidence            3222222344555555544

>PLN02981 glucosamine:fructose-6-phosphate aminotransferase

Probab=99.76  E-value=4.3e-17  Score=160.39  Aligned_cols=170  Identities=24%  Similarity=0.279  Sum_probs=132.3

Q ss_pred             CCCCcchHHHHHHHHHHHHHHHHHHhc-C-C----------hhHHHHHHHHHHcCCCeEEEEeccchHHHHHHHHHHHHh
Q 019775           11 LPHKVSENTLLDLFKSQQDHLNYFFQH-L-S----------LPHTLTFTQTLLKCRGTIFFTGVGKSGFVANKISQTLIS   78 (336)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~l~~~~~~-~-~----------~~~i~~~~~~i~~a~~~I~i~G~G~s~~~a~~~~~~l~~   78 (336)
                      ..+...++.+.+.+.++.+.++++.+. + +          ...+.++++.+.++ ++|+++|+|+|+.+|..+++.|.+
T Consensus       309 ~~k~~y~~~m~kEI~EQP~~l~~~l~~r~~~~~~~~~~~~~l~~l~~~~~~l~~~-~~I~~~G~GsS~~aa~~a~~~l~k  387 (680)
T PLN02981        309 IMKGNYDHYMQKEIHEQPESLTTTMRGRLIRGGSGKAKRVLLGGLKDHLKTIRRS-RRIVFIGCGTSYNAALAARPILEE  387 (680)
T ss_pred             hccCCCCchHHHHHHHHHHHHHHHHHHhhcccccccccccchHHHHHHHHHHhcC-CEEEEEEecHHHHHHHHHHHHHHH
Confidence            445677888999999999999998864 2 1          14577788888999 699999999999999988888887


Q ss_pred             c-CCeeeecCCccccccccCCCCCCcEEEEEeCCCCcHHHHHHHHHHHHcCCeEEEEeCCCCCccccccCEEEEcCCCcc
Q 019775           79 L-GIKSGFLNPLDALHGDIGILSSDDILVMFSKSGNTEELLKVVPCAKAKGAYLVSVTSVEGNALAAVCDMNVHLPVERE  157 (336)
Q Consensus        79 ~-g~~~~~~~~~~~~~~~~~~~~~~dlvi~iS~sG~~~~~~~~~~~ak~~g~~vi~IT~~~~s~l~~~ad~~i~~~~~~~  157 (336)
                      + |+++....+.+..... ....++|++|++|+||+|.+++++++.||++|+++|+||++.+|+|++.||+++.++.+.+
T Consensus       388 l~~i~v~~~~~sef~~~~-~~~~~~~lvI~ISqSGeT~eti~Al~~Ak~~Ga~~IaITn~~~S~La~~ad~~i~~~~g~E  466 (680)
T PLN02981        388 LSGVPVTMELASDLLDRQ-GPIYREDTAVFVSQSGETADTLRALEYAKENGALCVGITNTVGSAISRGTHCGVHINAGAE  466 (680)
T ss_pred             HhCCCEEEecchHHHhcc-ccCCCCCeEEEEeCCcCCHHHHHHHHHHHHCCCcEEEEECCCCChhHhccCeeEEecCccc
Confidence            5 7777766555443332 2356799999999999999999999999999999999999999999999999999988665


Q ss_pred             cCCCCCCChhHHHHHHHHHHHHHHHHHh
Q 019775          158 LCPFDLAPVTSTAIQMVFGDTVAIAMMG  185 (336)
Q Consensus       158 ~~~~~~~~~~s~~~~~~l~d~l~~~~~~  185 (336)
                      ..   ...+.+.++++.++-++...+..
T Consensus       467 ~~---~a~Tksfts~~~~l~llal~l~~  491 (680)
T PLN02981        467 IG---VASTKAYTSQIVAMTMLALALGE  491 (680)
T ss_pred             cc---ccccccHHHHHHHHHHHHHHHHh
Confidence            32   23334445555555555544543

>PTZ00394 glucosamine-fructose-6-phosphate aminotransferase; Provisional

Probab=99.76  E-value=4.1e-17  Score=159.89  Aligned_cols=172  Identities=19%  Similarity=0.220  Sum_probs=127.4

Q ss_pred             CCCCcchHHHHHHHHHHHHHHHHHHhc-CCh-------hHH-HHHHHHHHcCCCeEEEEeccchHHHHHHHHHHHHhc-C
Q 019775           11 LPHKVSENTLLDLFKSQQDHLNYFFQH-LSL-------PHT-LTFTQTLLKCRGTIFFTGVGKSGFVANKISQTLISL-G   80 (336)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~-------~~i-~~~~~~i~~a~~~I~i~G~G~s~~~a~~~~~~l~~~-g   80 (336)
                      .+....++.+.+.+.++.+.+.+++.. ++.       +.+ .+.++.+.++ ++|+++|+|+|+.+|..+.+.+.++ +
T Consensus       303 ~~k~~y~hfMlkEI~EQP~~l~~~l~~~~~~~~~~~~l~~~~~~~~~~l~~a-~rI~ivG~GtS~~aa~~ak~~~~kl~~  381 (670)
T PTZ00394        303 LSKGNYPHFMLKEIYEQPESVISSMHGRIDFSSGTVQLSGFTQQSIRAILTS-RRILFIACGTSLNSCLAVRPLFEELVP  381 (670)
T ss_pred             hhcCCCchHHHHHHHhhHHHHHHHHHhhhhhccCcccchhhHHHHHHHHhCC-CEEEEEEechHHHHHHHHHHHHHHhcC
Confidence            334566788888899999999988754 210       223 3455778899 6999999999998888766666554 3


Q ss_pred             CeeeecCCccccccccCCCCCCcEEEEEeCCCCcHHHHHHHHHHHHcCCeEEEEeCCCCCccccccCEEEEcCCCcccCC
Q 019775           81 IKSGFLNPLDALHGDIGILSSDDILVMFSKSGNTEELLKVVPCAKAKGAYLVSVTSVEGNALAAVCDMNVHLPVERELCP  160 (336)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~dlvi~iS~sG~~~~~~~~~~~ak~~g~~vi~IT~~~~s~l~~~ad~~i~~~~~~~~~~  160 (336)
                      ..+...... .+......++++|++|++|+||+|.+++++++.||++|+++|+||++.+|+|++.||++|.++++.+   
T Consensus       382 i~v~v~~as-ef~~~~~~~~~~dlvI~ISqSGeT~dtl~Al~~Ak~~Ga~tIaITn~~~S~La~~AD~~l~~~ag~E---  457 (670)
T PTZ00394        382 LPISVENAS-DFLDRRPRIQRDDVCFFVSQSGETADTLMALQLCKEAGAMCVGITNVVGSSISRLTHYAIHLNAGVE---  457 (670)
T ss_pred             CCEEEeccc-hhhhhccCCCCCCEEEEEECCcCcHHHHHHHHHHHHCCCcEEEEECCCCCHHHHhcCeEEEeccccc---
Confidence            444333332 2333445678999999999999999999999999999999999999999999999999999987665   


Q ss_pred             CCCCChhHHHHHHHHHHHHHHHHHhhc
Q 019775          161 FDLAPVTSTAIQMVFGDTVAIAMMGAR  187 (336)
Q Consensus       161 ~~~~~~~s~~~~~~l~d~l~~~~~~~~  187 (336)
                      .....+.+.++++.++.++...+...+
T Consensus       458 ~~va~Tks~tsql~~l~llal~la~~~  484 (670)
T PTZ00394        458 VGVASTKAYTSQVVVLTLVALLLSSDS  484 (670)
T ss_pred             ccccccHhHHHHHHHHHHHHHHHHHhc
Confidence            223444556666665555555555443

>PRK12570 N-acetylmuramic acid-6-phosphate etherase; Reviewed

Probab=99.75  E-value=6.9e-17  Score=143.06  Aligned_cols=195  Identities=15%  Similarity=0.120  Sum_probs=134.6

Q ss_pred             cccCCCCcchHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHcCCCeEEEEeccchHHHHHHHHHHHH-hcCCeeee-
Q 019775            8 LDLLPHKVSENTLLDLFKSQQDHLNYFFQHLSLPHTLTFTQTLLKCRGTIFFTGVGKSGFVANKISQTLI-SLGIKSGF-   85 (336)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~i~~a~~~I~i~G~G~s~~~a~~~~~~l~-~~g~~~~~-   85 (336)
                      +|..+..+.-..+.+--....+.+......+ .+.++.+++.+.+. +|||++|.|+|..+|...+..+. .++..... 
T Consensus        14 ld~~~~~~~~~~~~~~d~~~~~av~~~~~~I-~~a~~~~~~~l~~g-grl~~~GaG~Sg~la~~dA~e~~~tf~~~~~~~   91 (296)
T PRK12570         14 IDLLSSLDIVTLINQEDKKVPLAVEKVLPQI-AQAVDKIVAAFKKG-GRLIYMGAGTSGRLGVLDASECPPTFSVSPEMV   91 (296)
T ss_pred             cccCCHHHHHHHHHHHHHHHHHHHHHhHHHH-HHHHHHHHHHHHcC-CeEEEECCchhHHHHHHHHHhCcchhcCCcccc
Confidence            4444444444444444444444454455445 35666777778888 69999999999988655544432 23332211 


Q ss_pred             ----cC-------------Cccc-cc--cccCCCCCCcEEEEEeCCCCcHHHHHHHHHHHHcCCeEEEEeCCCCCccccc
Q 019775           86 ----LN-------------PLDA-LH--GDIGILSSDDILVMFSKSGNTEELLKVVPCAKAKGAYLVSVTSVEGNALAAV  145 (336)
Q Consensus        86 ----~~-------------~~~~-~~--~~~~~~~~~dlvi~iS~sG~~~~~~~~~~~ak~~g~~vi~IT~~~~s~l~~~  145 (336)
                          ..             +... ..  .....++++|++|++|.||++++++.+++.||++|+++|+||++++++++++
T Consensus        92 ~~~iagg~~a~~~a~~~~ed~~~~~~~~l~a~~l~~~DvvI~IS~SG~T~~vi~al~~Ak~~Ga~~IaIT~~~~s~La~~  171 (296)
T PRK12570         92 IGLIAGGPEAMFTAVEGAEDDPELGAQDLKAIGLTADDVVVGIAASGRTPYVIGALEYAKQIGATTIALSCNPDSPIAKI  171 (296)
T ss_pred             eeeeecCchHhhhcccccCCcHHHHHHHHHHcCCCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCeEEEEECCCCChhHHh
Confidence                10             0000 00  1123468999999999999999999999999999999999999999999999


Q ss_pred             cCEEEEcCCCcccCCCCCCChhHHHHHHHHHHHHHHHHHhhcCCChHHHhhcCCCCchhhh
Q 019775          146 CDMNVHLPVERELCPFDLAPVTSTAIQMVFGDTVAIAMMGARNLTRDEYAANHPAGRIGKS  206 (336)
Q Consensus       146 ad~~i~~~~~~~~~~~~~~~~~s~~~~~~l~d~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  206 (336)
                      +|+.|.+..+.+. ..+...+++.+++++++|+|+..++.+.+..++.+ +-+-...+.|.
T Consensus       172 aD~~I~~~~g~E~-~~~st~~~s~taqk~vLd~L~t~~~~r~Gk~~~n~-mvd~~~~n~kl  230 (296)
T PRK12570        172 ADIAISPVVGPEV-LTGSTRLKSGTAQKMVLNMLSTASMIRLGKSYQNL-MVDVKATNEKL  230 (296)
T ss_pred             CCEEEeeCcCCcc-ccccchHHHHHHHHHHHHHHHHHHHHhcchhhcCe-EEEeecchHHH
Confidence            9999987665552 34557789999999999999999999988554443 33333444443

>COG2524 Predicted transcriptional regulator, contains C-terminal CBS domains [Transcription]

Probab=99.75  E-value=9.9e-18  Score=139.17  Aligned_cols=122  Identities=20%  Similarity=0.288  Sum_probs=111.9

Q ss_pred             hhhhhhhhhccccCCCCccccCCCcHHHHHHHHHhcCcceEEEEcCCCcEEEEeeHHHHHHHHHhcCCchhhhhHhhhcC
Q 019775          205 KSLIFKVQDVMKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRRTLKASGEGIFKLTVGEMCN  284 (336)
Q Consensus       205 ~~~~~~v~~im~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~it~~dl~~~~~~~~~~~~~~~i~~~~~  284 (336)
                      .....+|.++|.++  +.++.+++|++++..+|.++++++.||+|++ +++|++|..|+...+.+..   ...++.++|.
T Consensus       168 siPk~~V~~~~s~~--~i~v~~d~tl~eaak~f~~~~i~GaPVvd~d-k~vGiit~~dI~~aia~g~---~~~kV~~~M~  241 (294)
T COG2524         168 SIPKEKVKNLMSKK--LITVRPDDTLREAAKLFYEKGIRGAPVVDDD-KIVGIITLSDIAKAIANGN---LDAKVSDYMR  241 (294)
T ss_pred             ecCcchhhhhccCC--ceEecCCccHHHHHHHHHHcCccCCceecCC-ceEEEEEHHHHHHHHHcCC---ccccHHHHhc
Confidence            34456999999998  5699999999999999999999999999965 9999999999999988633   3789999999


Q ss_pred             CCCeeeCCCccHHHHHHHhcCCCCCccEeEEEeCCCcEEEEEehhhHhhc
Q 019775          285 RSPRTIGPDAMAVEAMQKMESPPSPVQFLPVINRQNILIGIVTLHGLVSA  334 (336)
Q Consensus       285 ~~~~~v~~~~~l~~~~~~~~~~~~~~~~l~Vv~~~~~~iGiit~~di~~~  334 (336)
                      ++++++.+|+.+.||++.|..+  ++.++.|+|.+|+++|+||+.||++.
T Consensus       242 k~vitI~eDe~i~dAir~M~~~--nVGRLlV~ds~gkpvGiITrTDIL~~  289 (294)
T COG2524         242 KNVITINEDEDIYDAIRLMNKN--NVGRLLVTDSNGKPVGIITRTDILTR  289 (294)
T ss_pred             cCCceEcCchhHHHHHHHHHhc--CcceEEEEccCCcEEEEEehHHHHHH
Confidence            9999999999999999999999  99999999988999999999999874

>cd05017 SIS_PGI_PMI_1 The members of this protein family contain the SIS (Sugar ISomerase) domain and have both the phosphoglucose isomerase (PGI) and the phosphomannose isomerase (PMI) functions

Probab=99.71  E-value=1.5e-16  Score=122.82  Aligned_cols=96  Identities=26%  Similarity=0.346  Sum_probs=84.4

Q ss_pred             eEEEEeccchHHHHHHHHHHHHhc-CCeeeecCCccccccccCCCCCCcEEEEEeCCCCcHHHHHHHHHHHHcCCeEEEE
Q 019775           56 TIFFTGVGKSGFVANKISQTLISL-GIKSGFLNPLDALHGDIGILSSDDILVMFSKSGNTEELLKVVPCAKAKGAYLVSV  134 (336)
Q Consensus        56 ~I~i~G~G~s~~~a~~~~~~l~~~-g~~~~~~~~~~~~~~~~~~~~~~dlvi~iS~sG~~~~~~~~~~~ak~~g~~vi~I  134 (336)
                      +||++|.|.|+.+|+++++.|... |+++....+...    ..+++++|++|++|+||++++++++++.||++|+++|+|
T Consensus         1 ~I~i~G~G~S~~~a~~~~~~l~~~~~~~~~~~~~~~~----~~~~~~~dl~I~iS~SG~t~e~i~~~~~a~~~g~~iI~I   76 (119)
T cd05017           1 NIVILGMGGSGIGGDLLESLLLDEAKIPVYVVKDYTL----PAFVDRKTLVIAVSYSGNTEETLSAVEQAKERGAKIVAI   76 (119)
T ss_pred             CEEEEEcCHHHHHHHHHHHHHHhccCCCEEEecCccC----cCCCCCCCEEEEEECCCCCHHHHHHHHHHHHCCCEEEEE
Confidence            599999999999999999999984 999998876432    236789999999999999999999999999999999999


Q ss_pred             eCCCCCccccccC----EEEEcCCCcc
Q 019775          135 TSVEGNALAAVCD----MNVHLPVERE  157 (336)
Q Consensus       135 T~~~~s~l~~~ad----~~i~~~~~~~  157 (336)
                      |++  ++++++||    .++.+|.+..
T Consensus        77 T~~--~~l~~~~~~~~~~~~~~p~~~~  101 (119)
T cd05017          77 TSG--GKLLEMAREHGVPVIIIPKGLQ  101 (119)
T ss_pred             eCC--chHHHHHHHcCCcEEECCCCCC
Confidence            974  57999999    7888887654

These functions catalyze the reversible reactions of glucose 6-phosphate to fructose 6-phosphate, and mannose 6-phosphate to fructose 6-phosphate, respectively at an equal rate. This protein contains two SIS domains. This alignment is based on the first SIS domain.

>cd05009 SIS_GlmS_GlmD_2 SIS (Sugar ISomerase) domain repeat 2 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD)

Probab=99.71  E-value=3e-16  Score=126.81  Aligned_cols=141  Identities=18%  Similarity=0.241  Sum_probs=124.3

Q ss_pred             HHHHHHHHHHcCCCeEEEEeccchHHHHHHHHHHHHhcC-CeeeecCCccccccccCCCCCCcEEEEEeCCCCcHH-HHH
Q 019775           42 HTLTFTQTLLKCRGTIFFTGVGKSGFVANKISQTLISLG-IKSGFLNPLDALHGDIGILSSDDILVMFSKSGNTEE-LLK  119 (336)
Q Consensus        42 ~i~~~~~~i~~a~~~I~i~G~G~s~~~a~~~~~~l~~~g-~~~~~~~~~~~~~~~~~~~~~~dlvi~iS~sG~~~~-~~~  119 (336)
                      .++++++.+.++ ++|+++|.|.|+.+|.+++.+|.+.+ +++....+.+.++.....+++++++|++|.+|.+.+ +.+
T Consensus         2 ~~~~~a~~~~~~-~~i~~~G~G~s~~~a~e~~~kl~e~~~i~~~~~~~~e~~hg~~~~~~~~~~vi~is~~g~t~~~~~~   80 (153)
T cd05009           2 DIKELAEKLKEA-KSFYVLGRGPNYGTALEGALKLKETSYIHAEAYSAGEFKHGPIALVDEGTPVIFLAPEDRLEEKLES   80 (153)
T ss_pred             hHHHHHHHHhcc-CcEEEEcCCCCHHHHHHHHHHHHHHHhhcceeccHHHhccChhhhccCCCcEEEEecCChhHHHHHH
Confidence            578899999999 69999999999999999999999996 799999888888888888999999999999999765 899


Q ss_pred             HHHHHHHcCCeEEEEeCCCCCccccccCEEEEcCCCcccCCCCCCChhHHHHHHHHHHHHHHHHHhhcCCChHH
Q 019775          120 VVPCAKAKGAYLVSVTSVEGNALAAVCDMNVHLPVERELCPFDLAPVTSTAIQMVFGDTVAIAMMGARNLTRDE  193 (336)
Q Consensus       120 ~~~~ak~~g~~vi~IT~~~~s~l~~~ad~~i~~~~~~~~~~~~~~~~~s~~~~~~l~d~l~~~~~~~~~~~~~~  193 (336)
                      +++.+|++|+++++||++..+  .+.+|+.+.++...+       . .+.+..+..+.++...+...++..++.
T Consensus        81 ~~~~~~~~~~~vi~it~~~~s--~~~~d~~i~~~~~~~-------~-~~~~~~~~~~q~la~~~a~~~g~~~~~  144 (153)
T cd05009          81 LIKEVKARGAKVIVITDDGDA--KDLADVVIRVPATVE-------E-LSPLLYIVPLQLLAYHLAVARGIDPDK  144 (153)
T ss_pred             HHHHHHHcCCEEEEEecCCcc--cccCCeEEECCCCch-------h-HHHHHHHHHHHHHHHHHHHHcCCCCCC
Confidence            999999999999999999887  899999999988644       1 356677888899999999888766554

The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont

>COG2222 AgaS Predicted phosphosugar isomerases [Cell envelope biogenesis, outer membrane]

Probab=99.70  E-value=4.9e-16  Score=139.20  Aligned_cols=137  Identities=24%  Similarity=0.295  Sum_probs=120.5

Q ss_pred             HHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHcCC-CeEEEEeccchHHHHHHHHHHHH-hcCCeeeecCCccccccccC
Q 019775           20 LLDLFKSQQDHLNYFFQHLSLPHTLTFTQTLLKCR-GTIFFTGVGKSGFVANKISQTLI-SLGIKSGFLNPLDALHGDIG   97 (336)
Q Consensus        20 ~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~i~~a~-~~I~i~G~G~s~~~a~~~~~~l~-~~g~~~~~~~~~~~~~~~~~   97 (336)
                      +.+-.++..+.+..+++... ..++++.+.+.+.+ .+|+++|+|+|..++..+.+.+. ..|..+..++.++.......
T Consensus         5 m~~e~~~~p~~~~~~~~~~~-~~~~~l~~~l~~~~~~~I~~~g~GsS~~~~~~~~~~~~~~~~~~~~~~~~se~~~~~~~   83 (340)
T COG2222           5 MLREIEQQPAVVARLLEANR-AVLAELADFLRKRGIDRILFVGCGSSLHAATPAKYLLERELGLLVAAIPASEFLTNGAK   83 (340)
T ss_pred             hHHHHHhhHHHHHHHHHhhh-hHHHHHHHHHHhCCCcEEEEEecCchHHHHHHHHHHHHHhhCceeeeechhHHhccCcc
Confidence            44556667777777765554 77888888888773 59999999999999999999999 55888788888888888888


Q ss_pred             CCCCCcEEEEEeCCCCcHHHHHHHHHHHHcCCeEEEEeCCCCCccccccCEEEEcCCCcc
Q 019775           98 ILSSDDILVMFSKSGNTEELLKVVPCAKAKGAYLVSVTSVEGNALAAVCDMNVHLPVERE  157 (336)
Q Consensus        98 ~~~~~dlvi~iS~sG~~~~~~~~~~~ak~~g~~vi~IT~~~~s~l~~~ad~~i~~~~~~~  157 (336)
                      ...++.++|++|+||+|+|++.+++.||+.|+.+|+||+..+||+++.||++|.++.+.+
T Consensus        84 ~~~~~~lvi~~S~SG~TpE~vaa~~~a~~~ga~~i~lT~~~dSpLa~~ad~~i~~~~~~e  143 (340)
T COG2222          84 YLGEDSLVIAFSQSGNTPESVAAAELAKEGGALTIALTNEEDSPLARAADYVIPYLAGEE  143 (340)
T ss_pred             ccCCCeEEEEEeCCCCCHHHHHHHHHhccCCCeEEEEecCCCChhhhcCCeeeeccCCch
Confidence            888999999999999999999999999999999999999999999999999999999877

>TIGR02815 agaS_fam putative sugar isomerase, AgaS family

Probab=99.69  E-value=7.1e-16  Score=141.81  Aligned_cols=155  Identities=23%  Similarity=0.280  Sum_probs=117.6

Q ss_pred             HHHHHHHHHHHHhcCC--hhHHHHHHHHHHcCC-CeEEEEeccchHHHHHHHHHHHHhc-CCeeeecCCccccccccCCC
Q 019775           24 FKSQQDHLNYFFQHLS--LPHTLTFTQTLLKCR-GTIFFTGVGKSGFVANKISQTLISL-GIKSGFLNPLDALHGDIGIL   99 (336)
Q Consensus        24 ~~~~~~~l~~~~~~~~--~~~i~~~~~~i~~a~-~~I~i~G~G~s~~~a~~~~~~l~~~-g~~~~~~~~~~~~~~~~~~~   99 (336)
                      +.++.+.++++...++  .+.++++++.+.+.+ ++|+++|+|+|++.|..+.+.|.+. |.++....+.+.........
T Consensus         9 I~eqP~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~GsS~~a~~~~~~~~~~~~~i~v~~~~~~e~~~~~~~~~   88 (372)
T TIGR02815         9 IRQQPALWRRLLTIIQALRPALNAFLEPLLARENLRIVLTGAGTSAFIGDALAPWLASHTGLNVSAVPTTDLVSNPRQYL   88 (372)
T ss_pred             HHHChHHHHHHHHHHHHhHHHHHHHHHHHHhCCCCEEEEEechHHHHHHHHHHHHHHHhcCCCEEEEeCccccccccccc
Confidence            3444555554333222  256778887765432 6999999999999999999999874 89988887665444333333


Q ss_pred             --CCCcEEEEEeCCCCcHHHHHHHHHHHHc--CCeEEEEeCCCCCccccccC-----EEEEcCCCcccCCCCCCChhHHH
Q 019775          100 --SSDDILVMFSKSGNTEELLKVVPCAKAK--GAYLVSVTSVEGNALAAVCD-----MNVHLPVERELCPFDLAPVTSTA  170 (336)
Q Consensus       100 --~~~dlvi~iS~sG~~~~~~~~~~~ak~~--g~~vi~IT~~~~s~l~~~ad-----~~i~~~~~~~~~~~~~~~~~s~~  170 (336)
                        ++++++|++|+||+|.+++++++.||++  |+++++||++.+|+|++.||     +++.++.+.+  ..+...+.|.+
T Consensus        89 ~~~~~~lvi~iSqSGeT~etv~a~~~ak~~~~g~~~i~it~~~~s~la~~ad~~~~~~~i~~~ag~~--e~gva~Tksft  166 (372)
T TIGR02815        89 DPTRPTLLVSFARSGNSPESVAAVELADQLLPECYHLVLTCNEEGALYRNAINRSNAFALLMPAESN--DRSFAMTSSFS  166 (372)
T ss_pred             CCCCCeEEEEEeCCcCcHHHHHHHHHHHHhCCCCcEEEEEcCCCCHHHHhhcccCceeEEEccCCCc--cceeeeHHHHH
Confidence              3579999999999999999999999998  89999999999999999999     8888887633  24556666777


Q ss_pred             HHHHHHHHHH
Q 019775          171 IQMVFGDTVA  180 (336)
Q Consensus       171 ~~~~l~d~l~  180 (336)
                      ++++.+.+++
T Consensus       167 ~~l~al~~l~  176 (372)
T TIGR02815       167 CMTLATLAVL  176 (372)
T ss_pred             HHHHHHHHHH
Confidence            7777776663

Some members of this protein family are found in regions associated with N-acetyl-galactosamine and galactosamine untilization and are suggested to be isomerases.

>COG0449 GlmS Glucosamine 6-phosphate synthetase, contains amidotransferase and phosphosugar isomerase domains [Cell envelope biogenesis, outer membrane]

Probab=99.66  E-value=2.3e-15  Score=141.66  Aligned_cols=175  Identities=17%  Similarity=0.138  Sum_probs=137.6

Q ss_pred             ccCCCCcchHHHHHHHHHHHHHHHHHHhcC-Ch-hHHHHHHHHHHcCCCeEEEEeccchHHHHHHHHHHHHhc-CCeeee
Q 019775            9 DLLPHKVSENTLLDLFKSQQDHLNYFFQHL-SL-PHTLTFTQTLLKCRGTIFFTGVGKSGFVANKISQTLISL-GIKSGF   85 (336)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~-~~i~~~~~~i~~a~~~I~i~G~G~s~~~a~~~~~~l~~~-g~~~~~   85 (336)
                      +..+.....+.+.+.+.++.+.+.++.+.. +. .....-.+.+.+. +||+|+|+|+|++.+....+.|.++ +.++..
T Consensus       237 ~~a~Kg~y~hfMlKEI~EQP~~i~~tl~~~~~~~~~~~~~~~~~~~~-~rI~IvAcGTSYhAglv~ky~~E~la~ipv~V  315 (597)
T COG0449         237 CAAEKGGFRHFMLKEIYEQPEALRNTLQGRLDELVQNELDLDILREV-DRIIIVACGTSYHAGLVAKYFFERLAKIPVEV  315 (597)
T ss_pred             hHHhcCCCCchHHHHHHhhHHHHHHHHHhhhhhhhhhhhchhhhccc-ceEEEEECcHHHHHHHHHHHHHHHHhCCCeEE
Confidence            334455677888888999999999888853 21 1111112255688 6999999999999888888888877 466655


Q ss_pred             cCCccccccccCCCCCCcEEEEEeCCCCcHHHHHHHHHHHHcCCeEEEEeCCCCCccccccCEEEEcCCCcccCCCCCCC
Q 019775           86 LNPLDALHGDIGILSSDDILVMFSKSGNTEELLKVVPCAKAKGAYLVSVTSVEGNALAAVCDMNVHLPVERELCPFDLAP  165 (336)
Q Consensus        86 ~~~~~~~~~~~~~~~~~dlvi~iS~sG~~~~~~~~~~~ak~~g~~vi~IT~~~~s~l~~~ad~~i~~~~~~~~~~~~~~~  165 (336)
                      .-.++. .+....+.+++++|++|+||+|.+++.+++.+|++|+++++|||..+|++++.+|+.+.+.++.|   -....
T Consensus       316 e~aSEf-ry~~~~~~~~~L~I~ISQSGETaDTl~ALr~ak~~G~~tlaItNv~gSti~Resd~~l~~~AGpE---igVAs  391 (597)
T COG0449         316 EEASEF-RYREPALNPNTLVIAISQSGETADTLAALRLAKEQGAKTLAITNVPGSTIARESDHTLLIRAGPE---IGVAS  391 (597)
T ss_pred             Eeechh-hhhccCCCCCcEEEEEccCcccHHHHHHHHHHHHcCCCEEEEEecCCChhhcccceEEEeccCCc---eeeec
Confidence            444433 33445567889999999999999999999999999999999999999999999999999999988   55567


Q ss_pred             hhHHHHHHHHHHHHHHHHHhhcC
Q 019775          166 VTSTAIQMVFGDTVAIAMMGARN  188 (336)
Q Consensus       166 ~~s~~~~~~l~d~l~~~~~~~~~  188 (336)
                      +.+.++|+..+-+|...+.+.++
T Consensus       392 TKaftaQl~~L~lLal~~a~~~g  414 (597)
T COG0449         392 TKAFTAQVLALYLLALYLAKQRG  414 (597)
T ss_pred             chhHHHHHHHHHHHHHHHhHhhC
Confidence            77778888888788888887764

>COG3620 Predicted transcriptional regulator with C-terminal CBS domains [Transcription]

Probab=99.66  E-value=6.9e-16  Score=118.93  Aligned_cols=119  Identities=24%  Similarity=0.328  Sum_probs=105.8

Q ss_pred             hhhhhhccccCCCCccccCCCcHHHHHHHHHhcCcceEEEEcCCCcEEEEeeHHHHHHHHHhcCCchhhhhHhhhcCCCC
Q 019775          208 IFKVQDVMKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRRTLKASGEGIFKLTVGEMCNRSP  287 (336)
Q Consensus       208 ~~~v~~im~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~it~~dl~~~~~~~~~~~~~~~i~~~~~~~~  287 (336)
                      .+++..+|..+  ++.+.+++++.+++++|.+++++++||+++ ++++|-||++++.+.+.+...+.....+.++|..++
T Consensus        64 ~ita~~iM~sp--vv~v~pdDsi~~vv~lM~~~g~SQlPVi~~-~k~VGsItE~~iv~~~le~~e~i~~~~vr~vM~e~f  140 (187)
T COG3620          64 RITAKTIMHSP--VVSVSPDDSISDVVNLMRDKGISQLPVIEE-DKVVGSITENDIVRALLEGMESIRSLRVREVMGEPF  140 (187)
T ss_pred             eEeHhhhccCC--eeEECchhhHHHHHHHHHHcCCccCceeeC-CeeeeeecHHHHHHHHhccccchhhhhHHHHhcCCC
Confidence            45778889887  779999999999999999999999999995 899999999999999887656566788999999999


Q ss_pred             eeeCCCccHHHHHHHhcCCCCCccEeEEEeCCCcEEEEEehhhHhhc
Q 019775          288 RTIGPDAMAVEAMQKMESPPSPVQFLPVINRQNILIGIVTLHGLVSA  334 (336)
Q Consensus       288 ~~v~~~~~l~~~~~~~~~~~~~~~~l~Vv~~~~~~iGiit~~di~~~  334 (336)
                      +.|+++.++..+.+++..+    ..+.|+++ |+++|+||+.||++.
T Consensus       141 P~Vs~~~~l~vI~~LL~~~----~AVlV~e~-G~~vGIITk~DI~k~  182 (187)
T COG3620         141 PTVSPDESLNVISQLLEEH----PAVLVVEN-GKVVGIITKADIMKL  182 (187)
T ss_pred             CcCCCCCCHHHHHHHHhhC----CeEEEEeC-CceEEEEeHHHHHHH
Confidence            9999999999999998765    47888844 999999999999875

>cd04619 CBS_pair_6 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.66  E-value=1.7e-15  Score=116.06  Aligned_cols=110  Identities=16%  Similarity=0.231  Sum_probs=96.7

Q ss_pred             ccccCCCcHHHHHHHHHhcCcceEEEEcCCCcEEEEeeHHHHHHHHHhcCCchhhhhHhhhcCCCCeeeCCCccHHHHHH
Q 019775          222 PVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRRTLKASGEGIFKLTVGEMCNRSPRTIGPDAMAVEAMQ  301 (336)
Q Consensus       222 ~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~it~~dl~~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~l~~~~~  301 (336)
                      .++++++++.++.+.|.+.++..+||+|++|+++|+++.+++..............++.++|.+++..+.+++++.++++
T Consensus         4 ~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~~g~~~G~vt~~dl~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~a~~   83 (114)
T cd04619           4 AKIDVNATLQRAAKILGEPGIDLVVVCDPHGKLAGVLTKTDVVRQMGRCGGPGCTAPVENVMTRAVVSCRPGDLLHDVWQ   83 (114)
T ss_pred             EEECCCCcHHHHHHHHHhcCCCEEEEECCCCCEEEEEehHHHHHHHhhcCCCcccCCHHHHhcCCCeeECCCCCHHHHHH
Confidence            47899999999999999999999999998999999999999987654312122246788999889999999999999999


Q ss_pred             HhcCCCCCccEeEEEeCCCcEEEEEehhhHhh
Q 019775          302 KMESPPSPVQFLPVINRQNILIGIVTLHGLVS  333 (336)
Q Consensus       302 ~~~~~~~~~~~l~Vv~~~~~~iGiit~~di~~  333 (336)
                      .|.++  +.+.+||++++|+++|+|++.|+++
T Consensus        84 ~m~~~--~~~~lpVvd~~~~~~Gvi~~~dl~~  113 (114)
T cd04619          84 VMKQR--GLKNIPVVDENARPLGVLNARDALK  113 (114)
T ss_pred             HHHHc--CCCeEEEECCCCcEEEEEEhHhhcc
Confidence            99999  9999999998899999999999975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04630 CBS_pair_17 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.65  E-value=2.5e-15  Score=115.06  Aligned_cols=111  Identities=22%  Similarity=0.295  Sum_probs=97.4

Q ss_pred             CccccCCCcHHHHHHHHHhcCcceEEEEcCC-CcEEEEeeHHHHHHHHHhcCCchhhhhHhhhcCCCCeeeCCCccHHHH
Q 019775          221 LPVCKEGDLIMDQLVELTSKGCGCLLVIDEE-YHLIGTFTDGDLRRTLKASGEGIFKLTVGEMCNRSPRTIGPDAMAVEA  299 (336)
Q Consensus       221 ~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~-~~~~G~it~~dl~~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~l~~~  299 (336)
                      +++++++.++.++++.|.+.+++.+||+|++ ++++|+++.++++..+..........++.++|.+++.++++++++.++
T Consensus         3 ~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~G~v~~~dl~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~~   82 (114)
T cd04630           3 VVTIDGLATVAEALQLMKEHGVSSLVVEKRRESDAYGIVTMRDILKKVVAEGRDPDRVNVYEIMTKPLISVSPDMDIKYC   82 (114)
T ss_pred             cEEECCCCcHHHHHHHHHHcCCCEEEEEECCCCcEEEEEehHHHHHHHHhCCCCCCccCHHHHhcCCCeeECCCCCHHHH
Confidence            5689999999999999998899999999987 899999999999986654322223467889998888999999999999


Q ss_pred             HHHhcCCCCCccEeEEEeCCCcEEEEEehhhHhhc
Q 019775          300 MQKMESPPSPVQFLPVINRQNILIGIVTLHGLVSA  334 (336)
Q Consensus       300 ~~~~~~~~~~~~~l~Vv~~~~~~iGiit~~di~~~  334 (336)
                      ++.|.+.  +...+||+++ |+++|+|++.|++++
T Consensus        83 ~~~~~~~--~~~~~~Vvd~-~~~~Gvi~~~dl~~~  114 (114)
T cd04630          83 ARLMERT--NIRRAPVVEN-NELIGIISLTDIFLA  114 (114)
T ss_pred             HHHHHHc--CCCEeeEeeC-CEEEEEEEHHHhhcC
Confidence            9999998  8999999998 999999999999864

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>COG0279 GmhA Phosphoheptose isomerase [Carbohydrate transport and metabolism]

Probab=99.65  E-value=7.4e-15  Score=114.57  Aligned_cols=133  Identities=21%  Similarity=0.303  Sum_probs=100.4

Q ss_pred             HHHHHHHHHHHHhcCChhHHHHHHHHHHc---CCCeEEEEeccchHHHHHHHHHHHH------hcCCeeeecC-Cccc--
Q 019775           24 FKSQQDHLNYFFQHLSLPHTLTFTQTLLK---CRGTIFFTGVGKSGFVANKISQTLI------SLGIKSGFLN-PLDA--   91 (336)
Q Consensus        24 ~~~~~~~l~~~~~~~~~~~i~~~~~~i~~---a~~~I~i~G~G~s~~~a~~~~~~l~------~~g~~~~~~~-~~~~--   91 (336)
                      +....+......+ .-.+.++++++++.+   .+++|.++|.|.|+.-|++|+..|.      |.+.+++.++ +..-  
T Consensus         9 ~~es~~~~~~~~~-~l~~~I~~aa~~i~~~l~~G~Kvl~cGNGgSaadAqHfaael~gRf~~eR~~lpaIaLt~dsS~lT   87 (176)
T COG0279           9 FTESIQTQIAALE-ALIEAIERAAQLLVQSLLNGNKVLACGNGGSAADAQHFAAELTGRFEKERPSLPAIALSTDSSVLT   87 (176)
T ss_pred             HHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHcCCEEEEECCCcchhhHHHHHHHHhhHHHhcCCCCCeeEeecccHHHh
Confidence            3333333333332 223666676666642   2379999999999999999887665      3488888877 2111  


Q ss_pred             -cccc-----------cCCCCCCcEEEEEeCCCCcHHHHHHHHHHHHcCCeEEEEeCCCCCccccccCEEEEcCCCcc
Q 019775           92 -LHGD-----------IGILSSDDILVMFSKSGNTEELLKVVPCAKAKGAYLVSVTSVEGNALAAVCDMNVHLPVERE  157 (336)
Q Consensus        92 -~~~~-----------~~~~~~~dlvi~iS~sG~~~~~~~~~~~ak~~g~~vi~IT~~~~s~l~~~ad~~i~~~~~~~  157 (336)
                       +.+.           -..-.++|++|.||.||++++++++++.||++|++||++|++.+..++.++|+.|.+|+...
T Consensus        88 ai~NDy~yd~vFsRqveA~g~~GDvLigISTSGNS~nVl~Ai~~Ak~~gm~vI~ltG~~GG~~~~~~D~~i~VPs~~t  165 (176)
T COG0279          88 AIANDYGYDEVFSRQVEALGQPGDVLIGISTSGNSKNVLKAIEAAKEKGMTVIALTGKDGGKLAGLLDVEIRVPSTDT  165 (176)
T ss_pred             hhhccccHHHHHHHHHHhcCCCCCEEEEEeCCCCCHHHHHHHHHHHHcCCEEEEEecCCCcccccccceEEecCCCcc
Confidence             1111           11268999999999999999999999999999999999999999999999999999999754

>cd04603 CBS_pair_KefB_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the KefB (Kef-type K+ transport systems) domain which is involved in inorganic ion transport and metabolism

Probab=99.63  E-value=3.1e-15  Score=114.04  Aligned_cols=108  Identities=16%  Similarity=0.210  Sum_probs=94.2

Q ss_pred             ccccCCCcHHHHHHHHHhcCcceEEEEcCCCcEEEEeeHHHHHHHHHhcCCchhhhhHhhhcCCCCeeeCCCccHHHHHH
Q 019775          222 PVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRRTLKASGEGIFKLTVGEMCNRSPRTIGPDAMAVEAMQ  301 (336)
Q Consensus       222 ~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~it~~dl~~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~l~~~~~  301 (336)
                      .+++++.++.++.+.|.+.+.+.+||+|++|+++|+++..|+......   .....++.++|..++..+.+++++.++++
T Consensus         4 ~~v~~~~~l~~a~~~~~~~~~~~~~V~d~~~~~~G~v~~~dl~~~~~~---~~~~~~v~~~~~~~~~~v~~~~~l~~al~   80 (111)
T cd04603           4 VSVNCENPLREAIKMINELGARAVVVVDEENKVLGQVTLSDLLEIGPN---DYETLKVCEVYIVPVPIVYCDSKVTDLLR   80 (111)
T ss_pred             EEeCCCCcHHHHHHHHHHcCCCEEEEEcCCCCEEEEEEHHHHHhhccc---cccccChhheeecCCcEECCCCcHHHHHH
Confidence            478999999999999998889999999988999999999999873221   11134688889888889999999999999


Q ss_pred             HhcCCCCCccEeEEEeCCCcEEEEEehhhHhhc
Q 019775          302 KMESPPSPVQFLPVINRQNILIGIVTLHGLVSA  334 (336)
Q Consensus       302 ~~~~~~~~~~~l~Vv~~~~~~iGiit~~di~~~  334 (336)
                      .|.++  +...+||+|++|+++|+||.+|+++.
T Consensus        81 ~m~~~--~~~~lpVvd~~~~~~Giit~~di~~~  111 (111)
T cd04603          81 IFRET--EPPVVAVVDKEGKLVGTIYERELLRF  111 (111)
T ss_pred             HHHHc--CCCeEEEEcCCCeEEEEEEhHHhhcC
Confidence            99999  89999999988999999999999863

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04641 CBS_pair_28 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.62  E-value=8.6e-15  Score=113.12  Aligned_cols=112  Identities=19%  Similarity=0.265  Sum_probs=92.3

Q ss_pred             CccccCCCcHHHHHHHHHhcCcceEEEEcCCCcEEEEeeHHHHHHHHHhcCCchhhhhH------hhhcCCCCeeeCCCc
Q 019775          221 LPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRRTLKASGEGIFKLTV------GEMCNRSPRTIGPDA  294 (336)
Q Consensus       221 ~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~it~~dl~~~~~~~~~~~~~~~i------~~~~~~~~~~v~~~~  294 (336)
                      +++++++.++.++.+.|.+++.+.+||+|++|+++|+++.+||..............++      ...|..++..+.+++
T Consensus         3 ~~~i~~~~~l~~a~~~~~~~~~~~~pVv~~~~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~   82 (120)
T cd04641           3 IATARPDTPLIDVLDMLVERRVSALPIVDENGKVVDVYSRFDVINLAKEGAYNNLDLTVGEALERRSQDFEGVRTCSPDD   82 (120)
T ss_pred             cEEEcCCCCHHHHHHHHHHcCCCeeeEECCCCeEEEEEeHHHHHHHHhcCccccccCCHHHHHhhcccCCCCCeEEcCCC
Confidence            56899999999999999999999999999889999999999999765432221111112      233445567899999


Q ss_pred             cHHHHHHHhcCCCCCccEeEEEeCCCcEEEEEehhhHhhc
Q 019775          295 MAVEAMQKMESPPSPVQFLPVINRQNILIGIVTLHGLVSA  334 (336)
Q Consensus       295 ~l~~~~~~~~~~~~~~~~l~Vv~~~~~~iGiit~~di~~~  334 (336)
                      ++.++++.|.++  +.+.+||+|++|+++|+||+.|+++.
T Consensus        83 ~l~~~~~~m~~~--~~~~l~Vvd~~~~~~Givt~~di~~~  120 (120)
T cd04641          83 CLRTIFDLIVKA--RVHRLVVVDENKRVEGIISLSDILQF  120 (120)
T ss_pred             cHHHHHHHHHhc--CccEEEEECCCCCEEEEEEHHHhhcC
Confidence            999999999999  99999999988999999999999863

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04618 CBS_pair_5 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.61  E-value=4.2e-15  Score=110.69  Aligned_cols=94  Identities=19%  Similarity=0.213  Sum_probs=85.2

Q ss_pred             CccccCCCcHHHHHHHHHhcCcceEEEEcCC-CcEEEEeeHHHHHHHHHhcCCchhhhhHhhhcCCCCeeeCCCccHHHH
Q 019775          221 LPVCKEGDLIMDQLVELTSKGCGCLLVIDEE-YHLIGTFTDGDLRRTLKASGEGIFKLTVGEMCNRSPRTIGPDAMAVEA  299 (336)
Q Consensus       221 ~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~-~~~~G~it~~dl~~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~l~~~  299 (336)
                      +++++++.++.++.+.|.+++.+.+||+|++ |+++|++|..|+.....                  +.++.+++++.++
T Consensus         3 ~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~~~~~~~Givt~~Dl~~~~~------------------~~~v~~~~~l~~a   64 (98)
T cd04618           3 LVVFDTKLPVKKAFNALVENGIRSAPLWDSRKQQFVGMLTITDFILILR------------------LVSIHPERSLFDA   64 (98)
T ss_pred             EEEECCCCcHHHHHHHHHHcCCceEEEEeCCCCEEEEEEEHHHHhhhee------------------eEEeCCCCcHHHH
Confidence            5689999999999999999999999999974 89999999999986321                  6789999999999


Q ss_pred             HHHhcCCCCCccEeEEEeCC-CcEEEEEehhhHhhc
Q 019775          300 MQKMESPPSPVQFLPVINRQ-NILIGIVTLHGLVSA  334 (336)
Q Consensus       300 ~~~~~~~~~~~~~l~Vv~~~-~~~iGiit~~di~~~  334 (336)
                      ++.|.++  +.+.+||++++ |+++|+||.+|++++
T Consensus        65 ~~~m~~~--~~~~lpVvd~~~~~~~giit~~d~~~~   98 (98)
T cd04618          65 ALLLLKN--KIHRLPVIDPSTGTGLYILTSRRILKF   98 (98)
T ss_pred             HHHHHHC--CCCEeeEEECCCCCceEEeehhhhhcC
Confidence            9999999  99999999987 899999999999864

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>PRK07107 inosine 5-monophosphate dehydrogenase; Validated

Probab=99.61  E-value=2.3e-14  Score=135.43  Aligned_cols=159  Identities=18%  Similarity=0.182  Sum_probs=130.6

Q ss_pred             CChhHHHHHHHHHHHHHHHHHhhcCCChHHHhhcCCCCchhh--hhhhhhhhccccC-CCCccccCCCcHHHHHHHHHhc
Q 019775          164 APVTSTAIQMVFGDTVAIAMMGARNLTRDEYAANHPAGRIGK--SLIFKVQDVMKPQ-KELPVCKEGDLIMDQLVELTSK  240 (336)
Q Consensus       164 ~~~~s~~~~~~l~d~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~v~~im~~~-~~~~~~~~~~~v~~~~~~~~~~  240 (336)
                      .|+.|....+..=|.|...++...+..     ..|.+.+++.  .+..+|+++|... ...++++++.|+.++++.|.++
T Consensus        52 iP~~SatmdtvtgdalAiala~~gG~g-----~Ih~n~sie~qa~lV~kVk~~~~g~i~~~~tV~pd~tl~eAl~~m~~~  126 (502)
T PRK07107         52 IPLVSAIMQSVSDDNMAIALAREGGLS-----FIFGSQSIESEAAMVRRVKNYKAGFVVSDSNLTPDNTLADVLDLKEKT  126 (502)
T ss_pred             CChHHHHHHHHhhHHHHHHHHHcCCCe-----EeeCCCCHHHHHHHHHHHHHHhcCCcCCCCEeCCCCcHHHHHHHHHhc
Confidence            488999999999999999999998865     2233333333  3445788888632 1135899999999999999999


Q ss_pred             CcceEEEEcC---CCcEEEEeeHHHHHHHHHhcCCchhhhhHhhhcCC--CCeeeCCCccHHHHHHHhcCCCCCccEeEE
Q 019775          241 GCGCLLVIDE---EYHLIGTFTDGDLRRTLKASGEGIFKLTVGEMCNR--SPRTIGPDAMAVEAMQKMESPPSPVQFLPV  315 (336)
Q Consensus       241 ~~~~ipVvd~---~~~~~G~it~~dl~~~~~~~~~~~~~~~i~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~l~V  315 (336)
                      +++.+||+|+   +++++|+||..|++...     .....++.++|.+  ++.++.+++++.++++.|.++  +...+||
T Consensus       127 ~~~~vpVVD~~~~~gkLvGIVT~~DLr~~~-----~~~~~~V~dIMt~~~~~itv~~d~~l~eAl~lM~e~--~i~~LPV  199 (502)
T PRK07107        127 GHSTVAVTEDGTAHGKLLGIVTSRDYRISR-----MSLDTKVKDFMTPFEKLVTANEGTTLKEANDIIWDH--KLNTLPI  199 (502)
T ss_pred             CCCeEEEEeCCCcCCEEEEEEEcHHhhccc-----cCCCCCHHHHhCCCCCeEEECCCCcHHHHHHHHHHc--CCCEEEE
Confidence            9999999996   58999999999997421     1125679999986  667889999999999999999  9999999


Q ss_pred             EeCCCcEEEEEehhhHhhc
Q 019775          316 INRQNILIGIVTLHGLVSA  334 (336)
Q Consensus       316 v~~~~~~iGiit~~di~~~  334 (336)
                      +|++|+++|+||+.|+++.
T Consensus       200 VD~~g~LvGIIT~~Dilk~  218 (502)
T PRK07107        200 VDKNGNLVYLVFRKDYDSH  218 (502)
T ss_pred             EcCCCeEEEEEEhHHHHhc
Confidence            9988999999999999875

>cd04623 CBS_pair_10 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.60  E-value=1.6e-14  Score=110.07  Aligned_cols=111  Identities=26%  Similarity=0.458  Sum_probs=96.9

Q ss_pred             CccccCCCcHHHHHHHHHhcCcceEEEEcCCCcEEEEeeHHHHHHHHHhcCCchhhhhHhhhcCCCCeeeCCCccHHHHH
Q 019775          221 LPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRRTLKASGEGIFKLTVGEMCNRSPRTIGPDAMAVEAM  300 (336)
Q Consensus       221 ~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~it~~dl~~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~l~~~~  300 (336)
                      +..++++.++.++.+.+.+.+++.+||+|++++++|+++.+++...+..........++.++|.+++.++.+++++.+++
T Consensus         3 ~~~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~Giv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l   82 (113)
T cd04623           3 VITVRPDATVAEAAKLMAEKNIGAVVVVDDGGRLVGIFSERDIVRKVALRGASALDTPVSEIMTRNVITVTPDDTVDEAM   82 (113)
T ss_pred             CEEECCCCcHHHHHHHHHHcCCCeEEEECCCCCEEEEEehHHHHHHHhhcCCCccccCHHHhcCCCcEEECCCCcHHHHH
Confidence            45789999999999999999999999999889999999999999877643322224578899988889999999999999


Q ss_pred             HHhcCCCCCccEeEEEeCCCcEEEEEehhhHhhc
Q 019775          301 QKMESPPSPVQFLPVINRQNILIGIVTLHGLVSA  334 (336)
Q Consensus       301 ~~~~~~~~~~~~l~Vv~~~~~~iGiit~~di~~~  334 (336)
                      +.|.+.  +...+||+++ |+++|+|+..|++++
T Consensus        83 ~~~~~~--~~~~~~Vv~~-~~~~Gvit~~di~~~  113 (113)
T cd04623          83 ALMTER--RFRHLPVVDG-GKLVGIVSIGDVVKA  113 (113)
T ss_pred             HHHHHc--CCCEeEEEeC-CEEEEEEEHHHhhcC
Confidence            999998  8899999988 999999999999864

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04600 CBS_pair_HPP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the HPP motif domain

Probab=99.60  E-value=1.3e-14  Score=112.71  Aligned_cols=112  Identities=24%  Similarity=0.345  Sum_probs=97.2

Q ss_pred             CccccCCCcHHHHHHHHHhcCcceEEEEcCCCcEEEEeeHHHHHHHHHhcCCc---------hhhhhHhhhcCCCCeeeC
Q 019775          221 LPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRRTLKASGEG---------IFKLTVGEMCNRSPRTIG  291 (336)
Q Consensus       221 ~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~it~~dl~~~~~~~~~~---------~~~~~i~~~~~~~~~~v~  291 (336)
                      +++++++.++.++.+.|.+.+++.+||++++|+++|+++..+|...+......         ....++.++|.+++.++.
T Consensus         4 ~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~Giv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~   83 (124)
T cd04600           4 VVTVTPDTSLEEAWALLRRHRIKALPVVDGDRRLVGIVTQRDLLRHARPDGRRPLRGRLRGRDKPETVGDIMSPPVVTVR   83 (124)
T ss_pred             cEEeCCCCCHHHHHHHHHHcCCceeeEECCCCCEEEEEEHHHHHhhhcccccchhhhhhhcccccccHHHhccCCCeeeC
Confidence            56889999999999999998999999999889999999999998765432210         123468899988999999


Q ss_pred             CCccHHHHHHHhcCCCCCccEeEEEeCCCcEEEEEehhhHhhc
Q 019775          292 PDAMAVEAMQKMESPPSPVQFLPVINRQNILIGIVTLHGLVSA  334 (336)
Q Consensus       292 ~~~~l~~~~~~~~~~~~~~~~l~Vv~~~~~~iGiit~~di~~~  334 (336)
                      +++++.++++.|.++  +...+||++++|+++|+|++.|++++
T Consensus        84 ~~~~l~~~~~~~~~~--~~~~~~Vv~~~g~~~Gvit~~di~~~  124 (124)
T cd04600          84 PDTPIAELVPLLADG--GHHHVPVVDEDRRLVGIVTQTDLIAA  124 (124)
T ss_pred             CCCcHHHHHHHHHhc--CCCceeEEcCCCCEEEEEEhHHhhcC
Confidence            999999999999998  89999999988999999999999864

These proteins are integral membrane proteins with four transmembrane spanning helices. The function of these proteins is uncertain, but they are thought to be transporters. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04593 CBS_pair_EriC_assoc_bac_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in bacteria and archaea

Probab=99.60  E-value=2e-14  Score=110.05  Aligned_cols=111  Identities=26%  Similarity=0.357  Sum_probs=96.6

Q ss_pred             CccccCCCcHHHHHHHHHhcCcceEEEEcCCCcEEEEeeHHHHHHHHHhcCCchhhhhHhhhcCCCCeeeCCCccHHHHH
Q 019775          221 LPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRRTLKASGEGIFKLTVGEMCNRSPRTIGPDAMAVEAM  300 (336)
Q Consensus       221 ~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~it~~dl~~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~l~~~~  300 (336)
                      .++++++.++.++.+.|.+.++..+||+|++|+++|+++.+||+....... .....++.++|.+++.++.+++++.+++
T Consensus         3 ~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~dl~~~~~~~~-~~~~~~~~~~~~~~~~~v~~~~~l~~~l   81 (115)
T cd04593           3 PPVLSATTPLREAAEQLIESKHGSALVVDRDGGVVGIITLPDLLRALEADE-AGEPSAVDEVATPPLLTVHPDEPLAHAL   81 (115)
T ss_pred             CcEeCCCCCHHHHHHHHHhCCCcEEEEEcCCCCEEEEEEHHHHHHHHhccc-ccccccHHHhccCCceEECCCCCHHHHH
Confidence            457899999999999999989999999998899999999999998765322 1123458888888899999999999999


Q ss_pred             HHhcCCCCCccEeEEEeCC--CcEEEEEehhhHhhc
Q 019775          301 QKMESPPSPVQFLPVINRQ--NILIGIVTLHGLVSA  334 (336)
Q Consensus       301 ~~~~~~~~~~~~l~Vv~~~--~~~iGiit~~di~~~  334 (336)
                      +.|.++  +...+||+|++  |+++|+||+.|++++
T Consensus        82 ~~~~~~--~~~~~~Vvd~~~~~~~~Gvit~~di~~~  115 (115)
T cd04593          82 DRMASR--GLRQLPVVDRGNPGQVLGLLTRENVLLA  115 (115)
T ss_pred             HHHHHc--CCceeeEEeCCCCCeEEEEEEhHHhhcC
Confidence            999999  89999999987  799999999999874

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS d

>cd04643 CBS_pair_30 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.59  E-value=2e-14  Score=110.18  Aligned_cols=110  Identities=27%  Similarity=0.397  Sum_probs=94.2

Q ss_pred             CccccCCCcHHHHHHHHHhcCcceEEEEcCCCcEEEEeeHHHHHHHHHhcCCchh----hhhHhhhcCCCCeeeCCCccH
Q 019775          221 LPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRRTLKASGEGIF----KLTVGEMCNRSPRTIGPDAMA  296 (336)
Q Consensus       221 ~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~it~~dl~~~~~~~~~~~~----~~~i~~~~~~~~~~v~~~~~l  296 (336)
                      ++++++++++.++.+.|.+.+++.+||+|++|+++|+++.+++...+........    ..++.++|.+.+..+.+++++
T Consensus         3 ~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l   82 (116)
T cd04643           3 VAYVQDTNTLRHALLVLTKHGYSAIPVLDKEGKYVGTISLTDILWKLKGLENLDLERLVDLKVIDVMNTDVPVIIDDADI   82 (116)
T ss_pred             cEEECCCCcHHHHHHHHHHCCCceeeeECCCCcEEEEEeHHHHHHHhhccCchhHHHHhCCcHHHHhcCCCceecCCCCH
Confidence            5688999999999999999999999999988999999999999987653221111    357889998889999999999


Q ss_pred             HHHHHHhcCCCCCccEeEEEeCCCcEEEEEehhhHhhc
Q 019775          297 VEAMQKMESPPSPVQFLPVINRQNILIGIVTLHGLVSA  334 (336)
Q Consensus       297 ~~~~~~~~~~~~~~~~l~Vv~~~~~~iGiit~~di~~~  334 (336)
                      .++++.|.+.  +  .+||++++|+++|+||+.|++++
T Consensus        83 ~~a~~~~~~~--~--~~~Vv~~~~~~~Gvit~~dil~~  116 (116)
T cd04643          83 EEILHLLIDQ--P--FLPVVDDDGIFIGIITRREILKA  116 (116)
T ss_pred             HHHHHHHhcC--C--ceeEEeCCCeEEEEEEHHHhhcC
Confidence            9999999876  4  58999988999999999999864

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04639 CBS_pair_26 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.59  E-value=2e-14  Score=109.24  Aligned_cols=108  Identities=25%  Similarity=0.345  Sum_probs=95.6

Q ss_pred             CccccCCCcHHHHHHHHHhcCcceEEEEcCCCcEEEEeeHHHHHHHHHhcCCchhhhhHhhhcCCCCeeeCCCccHHHHH
Q 019775          221 LPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRRTLKASGEGIFKLTVGEMCNRSPRTIGPDAMAVEAM  300 (336)
Q Consensus       221 ~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~it~~dl~~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~l~~~~  300 (336)
                      +.++.++.+++++.+.+.+.+...+||++++|+++|+++..++...+.....   ..++.++|..++..+.+++++.+++
T Consensus         3 ~~~v~~~~~i~e~~~~~~~~~~~~~~V~~~~~~~~G~v~~~~l~~~~~~~~~---~~~v~~~~~~~~~~i~~~~~~~~~~   79 (111)
T cd04639           3 FETLSPADTLDDAADALLATTQHEFPVVDGDGHLVGLLTRDDLIRALAEGGP---DAPVRGVMRRDFPTVSPSATLDAVL   79 (111)
T ss_pred             ceEcCCCCcHHHHHHHHHHcCCCcceEECCCCcEEEEeeHHHHHHHHHhcCC---CCcHHHHhcCCCcEECCCCcHHHHH
Confidence            4578999999999999988888999999988999999999999987654221   3478888888889999999999999


Q ss_pred             HHhcCCCCCccEeEEEeCCCcEEEEEehhhHhh
Q 019775          301 QKMESPPSPVQFLPVINRQNILIGIVTLHGLVS  333 (336)
Q Consensus       301 ~~~~~~~~~~~~l~Vv~~~~~~iGiit~~di~~  333 (336)
                      +.|.++  +...+||++++|+++|++|+.|+.+
T Consensus        80 ~~~~~~--~~~~~~Vv~~~~~~~G~it~~dl~~  110 (111)
T cd04639          80 RLMQQG--GAPAVPVVDGSGRLVGLVTLENVGE  110 (111)
T ss_pred             HHHHhc--CCceeeEEcCCCCEEEEEEHHHhhc
Confidence            999998  8899999998899999999999975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04617 CBS_pair_4 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.59  E-value=2.2e-14  Score=110.56  Aligned_cols=110  Identities=27%  Similarity=0.417  Sum_probs=94.6

Q ss_pred             CccccCCCcHHHHHHHHHhcCcceEEEEcCCCcEEEEeeHHHHHHHHHhcCCchhhhhHhhhcCC--CCeeeCCCccHHH
Q 019775          221 LPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRRTLKASGEGIFKLTVGEMCNR--SPRTIGPDAMAVE  298 (336)
Q Consensus       221 ~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~it~~dl~~~~~~~~~~~~~~~i~~~~~~--~~~~v~~~~~l~~  298 (336)
                      +.+++++.++.++++.|..++...+||+|++++++|+++..++........ .....++.++|.+  .+.++.+++++.+
T Consensus         3 ~~~~~~~~~~~~a~~~~~~~~~~~~~V~d~~~~~~Givt~~dl~~~~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~l~~   81 (118)
T cd04617           3 PVVVRENTSVYDAIVTLFLEDVGSLFVVDEDGDLVGVVSRKDLLKASIGGA-DLQKVPVGVIMTRMPNITTTTPEESVLE   81 (118)
T ss_pred             CEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCCEEEEEEHHHHHHHHHcCC-CccCCCHHHHhCCCCCcEEECCCCcHHH
Confidence            457899999999999999889999999998899999999999998765322 1124567788864  6779999999999


Q ss_pred             HHHHhcCCCCCccEeEEEeCC---CcEEEEEehhhHhh
Q 019775          299 AMQKMESPPSPVQFLPVINRQ---NILIGIVTLHGLVS  333 (336)
Q Consensus       299 ~~~~~~~~~~~~~~l~Vv~~~---~~~iGiit~~di~~  333 (336)
                      +++.|.++  +.+.+||+|++   |+++|+||+.||++
T Consensus        82 ~~~~~~~~--~~~~lpVvd~~~~~~~l~Gvit~~~l~~  117 (118)
T cd04617          82 AAKKLIEH--QVDSLPVVEKVDEGLEVIGRITKTNITK  117 (118)
T ss_pred             HHHHHHHc--CCCEeeEEeCCCccceEEEEEEhhheec
Confidence            99999999  89999999986   69999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>COG3448 CBS-domain-containing membrane protein [Signal transduction mechanisms]

Probab=99.58  E-value=6.1e-15  Score=124.96  Aligned_cols=155  Identities=22%  Similarity=0.261  Sum_probs=126.3

Q ss_pred             HHHHHHHHHhhcCCChHHHhhcCCCCchhh----hhhhhhhhccccCCCCccccCCCcHHHHHHHHHhcCcceEEEEcCC
Q 019775          176 GDTVAIAMMGARNLTRDEYAANHPAGRIGK----SLIFKVQDVMKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEE  251 (336)
Q Consensus       176 ~d~l~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~v~~im~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~  251 (336)
                      +|.-+..+-+..+++++++...-++-++..    ....+..+||.++  ++++..++++.++..++.+|++..+||+|++
T Consensus       208 ld~aL~~~~E~lDIdrddLe~llr~~elqa~~R~~~~LtcadIMSrd--Vvtv~~~ts~dhA~~ll~~H~ikaLPV~d~~  285 (382)
T COG3448         208 LDAALQRLGETLDIDRDDLERLLRETELQALRRRMGELTCADIMSRD--VVTVSTDTSIDHARKLLQEHRIKALPVLDEH  285 (382)
T ss_pred             HHHHHHhcCceecCCHHHHHHHHHHHHHHHHHHHhccccHHHhcCcc--ceecCCcCChHHHHHHHHHcCcccccccccc
Confidence            455556666777888888754433333222    2366889999998  6799999999999999999999999999999


Q ss_pred             CcEEEEeeHHHHHHHHHhcC----CchhhhhHhhhcCCCCeeeCCCccHHHHHHHhcCCCCCccEeEEEeCCCcEEEEEe
Q 019775          252 YHLIGTFTDGDLRRTLKASG----EGIFKLTVGEMCNRSPRTIGPDAMAVEAMQKMESPPSPVQFLPVINRQNILIGIVT  327 (336)
Q Consensus       252 ~~~~G~it~~dl~~~~~~~~----~~~~~~~i~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~l~Vv~~~~~~iGiit  327 (336)
                      .+++|+|+.+||........    .......++.+|+++..++.++++..+.+-+|.+.  +.+.+||+|++|+++||||
T Consensus       286 ~rl~GiVt~~dl~~~a~~~p~qrlr~~~~~~vk~imt~~v~tv~pdtpa~~lvp~lad~--g~H~lpvld~~g~lvGIvs  363 (382)
T COG3448         286 RRLVGIVTQRDLLKHARPSPFQRLRFLRPPTVKGIMTTPVVTVRPDTPAVELVPRLADE--GLHALPVLDAAGKLVGIVS  363 (382)
T ss_pred             cceeeeeeHHHHhhccCcchHHHhhccCCCcccccccCcceeecCCCcHHHHHHHhhcC--CcceeeEEcCCCcEEEEee
Confidence            99999999999998443211    11223578899998999999999999999999999  9999999999999999999


Q ss_pred             hhhHhhc
Q 019775          328 LHGLVSA  334 (336)
Q Consensus       328 ~~di~~~  334 (336)
                      ..|++.+
T Consensus       364 QtDliaa  370 (382)
T COG3448         364 QTDLIAA  370 (382)
T ss_pred             HHHHHHH
Confidence            9999864

>PRK01862 putative voltage-gated ClC-type chloride channel ClcB; Provisional

Probab=99.58  E-value=3.9e-14  Score=138.05  Aligned_cols=126  Identities=17%  Similarity=0.228  Sum_probs=108.5

Q ss_pred             hhhhhhhhhhccccCCCCccccCCCcHHHHHHHHHhcCcceEEEEcCCCcEEEEeeHHHHHHHHHhcCCchhhhhHhhhc
Q 019775          204 GKSLIFKVQDVMKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRRTLKASGEGIFKLTVGEMC  283 (336)
Q Consensus       204 ~~~~~~~v~~im~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~it~~dl~~~~~~~~~~~~~~~i~~~~  283 (336)
                      .....++++|+|+++.  ++++++++++++.+.+.+++.+.+||+|++++++|+++.+|+.+.+.... .....++.++|
T Consensus       442 ~~L~~~~V~dim~~~~--~~v~~~~tl~ea~~~l~~~~~~~~~VvD~~g~lvGiVt~~dL~~~l~~~~-~~~~~~v~dim  518 (574)
T PRK01862        442 ERLRTTQMRELIQPAQ--TVVPPTASVADMTRVFLEYPVKYLYVVDDDGRFRGAVALKDITSDLLDKR-DTTDKTAADYA  518 (574)
T ss_pred             hHHhhCcHHHHhcCCC--ceeCCCCCHHHHHHHHHhCCCceEEEEcCCCeEEEEEEHHHHHHHhhccc-ccccchHHHhc
Confidence            3345789999999874  48999999999999999999999999999999999999999998654322 11235788999


Q ss_pred             CCCCeeeCCCccHHHHHHHhcCCCCCccEeEEEeCC--CcEEEEEehhhHhhc
Q 019775          284 NRSPRTIGPDAMAVEAMQKMESPPSPVQFLPVINRQ--NILIGIVTLHGLVSA  334 (336)
Q Consensus       284 ~~~~~~v~~~~~l~~~~~~~~~~~~~~~~l~Vv~~~--~~~iGiit~~di~~~  334 (336)
                      .+++..+++++++.++++.|.++  +.+.+||+|++  ++++|+||++|++++
T Consensus       519 ~~~~~~v~~d~~L~~al~~m~~~--~~~~lpVVd~~~~~~liGvIt~~DIl~~  569 (574)
T PRK01862        519 HTPFPLLTPDMPLGDALEHFMAF--QGERLPVVESEASPTLAGVVYKTSLLDA  569 (574)
T ss_pred             cCCCeeECCCCCHHHHHHHHHhc--CCCeeeeEeCCCCCeEEEEEEHHHHHHH
Confidence            99899999999999999999999  89999999876  489999999999874

>PRK15094 magnesium/cobalt efflux protein CorC; Provisional

Probab=99.58  E-value=1.6e-14  Score=128.31  Aligned_cols=120  Identities=17%  Similarity=0.279  Sum_probs=103.8

Q ss_pred             hhhhhccccCCCCccccCCCcHHHHHHHHHhcCcceEEEEcCC-CcEEEEeeHHHHHHHHHhcCCchhhhhHhhhcCCCC
Q 019775          209 FKVQDVMKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEE-YHLIGTFTDGDLRRTLKASGEGIFKLTVGEMCNRSP  287 (336)
Q Consensus       209 ~~v~~im~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~-~~~~G~it~~dl~~~~~~~~~~~~~~~i~~~~~~~~  287 (336)
                      .+|+++|.|...+++++.+.+++++.+.+.+++++.+||++++ ++++|+++.+|++........   ...+.++|.+ +
T Consensus        67 ~~V~diMtpr~~i~~l~~~~sl~e~~~~i~~~~~sr~PV~~~~~d~iiGiv~~kDll~~~~~~~~---~~~l~~l~r~-~  142 (292)
T PRK15094         67 QRVRDIMIPRSQMITLKRNQTLDECLDVIIESAHSRFPVISEDKDHIEGILMAKDLLPFMRSDAE---AFSMDKVLRQ-A  142 (292)
T ss_pred             CEEeEEccchHHEEEEeCCCCHHHHHHHHHhcCCcEEEEecCCCCcEEEEEEHHHHHhHhhccCC---cCCHHHHcCC-C
Confidence            3789999997667899999999999999999999999999866 689999999999975532111   2347788865 4


Q ss_pred             eeeCCCccHHHHHHHhcCCCCCccEeEEEeCCCcEEEEEehhhHhhc
Q 019775          288 RTIGPDAMAVEAMQKMESPPSPVQFLPVINRQNILIGIVTLHGLVSA  334 (336)
Q Consensus       288 ~~v~~~~~l~~~~~~~~~~~~~~~~l~Vv~~~~~~iGiit~~di~~~  334 (336)
                      .+++++.++.++++.|+++  +.+.+||+|+.|.++|+||+.||++.
T Consensus       143 ~~V~e~~~l~~~L~~m~~~--~~~~a~VvDe~G~viGiVTleDIle~  187 (292)
T PRK15094        143 VVVPESKRVDRMLKEFRSQ--RYHMAIVIDEFGGVSGLVTIEDILEL  187 (292)
T ss_pred             cCcCCCCcHHHHHHHHHhc--CCEEEEEEeCCCCEEEEeEHHHHHHH
Confidence            5899999999999999999  99999999999999999999999874

>cd04631 CBS_pair_18 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.58  E-value=3.2e-14  Score=110.53  Aligned_cols=112  Identities=28%  Similarity=0.335  Sum_probs=96.6

Q ss_pred             CccccCCCcHHHHHHHHHhcCcceEEEEcCC-CcEEEEeeHHHHHHHHHhcCC----------chhhhhHhhhcCCCCee
Q 019775          221 LPVCKEGDLIMDQLVELTSKGCGCLLVIDEE-YHLIGTFTDGDLRRTLKASGE----------GIFKLTVGEMCNRSPRT  289 (336)
Q Consensus       221 ~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~-~~~~G~it~~dl~~~~~~~~~----------~~~~~~i~~~~~~~~~~  289 (336)
                      +++++++.++.++++.|.+.+.+.+||+|++ |+++|+++..++...+.....          .....++.+++.+++.+
T Consensus         3 ~~~v~~~~~~~~~~~~~~~~~~~~i~V~d~~~~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (125)
T cd04631           3 VVTVPPTTPIMEAAKIMVRNGFRRLPVVDEGTGKLVGIITATDILKYLGGGEKFNKIKTGNGLEAINEPVRSIMTRNVIT   82 (125)
T ss_pred             ceEeCCCCcHHHHHHHHHHcCcccceeEeCCCCEEEEEEEHHHHHHHhhccchhccccccccchhhhcCHHHHhcCCceE
Confidence            4578999999999999999999999999986 999999999999987653221          01235788888888999


Q ss_pred             eCCCccHHHHHHHhcCCCCCccEeEEEeCCCcEEEEEehhhHhhc
Q 019775          290 IGPDAMAVEAMQKMESPPSPVQFLPVINRQNILIGIVTLHGLVSA  334 (336)
Q Consensus       290 v~~~~~l~~~~~~~~~~~~~~~~l~Vv~~~~~~iGiit~~di~~~  334 (336)
                      +.+++++.++++.|.+.  +...+||++++|+++|+||+.||+++
T Consensus        83 v~~~~~l~~~~~~~~~~--~~~~~~V~~~~~~~~Gvit~~di~~~  125 (125)
T cd04631          83 ITPDDSIKDAAELMLEK--RVGGLPVVDDDGKLVGIVTERDLLKA  125 (125)
T ss_pred             eCCCCcHHHHHHHHHHc--CCceEEEEcCCCcEEEEEEHHHhhcC
Confidence            99999999999999999  89999999987999999999999864

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04583 CBS_pair_ABC_OpuCA_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA

Probab=99.58  E-value=3.5e-14  Score=107.47  Aligned_cols=105  Identities=19%  Similarity=0.333  Sum_probs=93.9

Q ss_pred             CccccCCCcHHHHHHHHHhcCcceEEEEcCCCcEEEEeeHHHHHHHHHhcCCchhhhhHhhhcCCCCeeeCCCccHHHHH
Q 019775          221 LPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRRTLKASGEGIFKLTVGEMCNRSPRTIGPDAMAVEAM  300 (336)
Q Consensus       221 ~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~it~~dl~~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~l~~~~  300 (336)
                      ++.++++.++.++.+.|.+.++..+||+|++|+++|+++..|+......      ..++.++|.+.+..+.+++++.+++
T Consensus         4 ~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~dl~~~~~~------~~~v~~~~~~~~~~v~~~~~~~~~~   77 (109)
T cd04583           4 PVTITPDRTLAEAIKLMRDKKVDSLLVVDKDNKLLGIVSLESLEQAYKE------AKSLEDIMLEDVFTVQPDASLRDVL   77 (109)
T ss_pred             CEEECCCCCHHHHHHHHHHCCCceEEEEcCCCcEEEEEEHHHHHHHhhc------CCcHhHhhcCCceEECCCCcHHHHH
Confidence            4578999999999999998899999999988999999999999875432      2467888888889999999999999


Q ss_pred             HHhcCCCCCccEeEEEeCCCcEEEEEehhhHhh
Q 019775          301 QKMESPPSPVQFLPVINRQNILIGIVTLHGLVS  333 (336)
Q Consensus       301 ~~~~~~~~~~~~l~Vv~~~~~~iGiit~~di~~  333 (336)
                      +.|.+.  +...+||++++|+++|++|+.|+++
T Consensus        78 ~~~~~~--~~~~~~vv~~~g~~~Gvit~~~l~~  108 (109)
T cd04583          78 GLVLKR--GPKYVPVVDEDGKLVGLITRSSLVD  108 (109)
T ss_pred             HHHHHc--CCceeeEECCCCeEEEEEehHHhhc
Confidence            999998  8899999998899999999999986

OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyz

>cd04587 CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain

Probab=99.57  E-value=3.3e-14  Score=108.38  Aligned_cols=111  Identities=22%  Similarity=0.352  Sum_probs=95.4

Q ss_pred             CccccCCCcHHHHHHHHHhcCcceEEEEcCCCcEEEEeeHHHHHHHHHhcCCchhhhhHhhhcCCCCeeeCCCccHHHHH
Q 019775          221 LPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRRTLKASGEGIFKLTVGEMCNRSPRTIGPDAMAVEAM  300 (336)
Q Consensus       221 ~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~it~~dl~~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~l~~~~  300 (336)
                      ++++.++.++.++.+.|.+++.+.+||+++ |+++|+++..++..............++.++|.+++..+.+++++.+++
T Consensus         3 ~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~-~~~~G~v~~~dl~~~~~~~~~~~~~~~v~~i~~~~~~~v~~~~~l~~~~   81 (113)
T cd04587           3 PATVSPTTTVQEAAKLMREKRVSCVLVMDG-NKLVGIFTSKDIALRVVAQGLDPESTLVERVMTPNPVCATSDTPVLEAL   81 (113)
T ss_pred             CeEeCCCCCHHHHHHHHHHcCCCeEEEEEC-CEEEEEEEhHHHHHHHHhcCCCcCcCCHHHhcCCCCeEEcCCCCHHHHH
Confidence            457899999999999999888899999997 9999999999998655443222212578899988889999999999999


Q ss_pred             HHhcCCCCCccEeEEEeCCCcEEEEEehhhHhhc
Q 019775          301 QKMESPPSPVQFLPVINRQNILIGIVTLHGLVSA  334 (336)
Q Consensus       301 ~~~~~~~~~~~~l~Vv~~~~~~iGiit~~di~~~  334 (336)
                      +.|.++  +.+.+||++++|+++|+|+..|++.+
T Consensus        82 ~~~~~~--~~~~l~Vv~~~~~~~Gvvs~~dl~~~  113 (113)
T cd04587          82 HLMVQG--KFRHLPVVDKSGQVVGLLDVTKLTHA  113 (113)
T ss_pred             HHHHHc--CCCcccEECCCCCEEEEEEHHHhccC
Confidence            999998  88999999988999999999999864

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pai

>cd04605 CBS_pair_MET2_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the MET2 domain

Probab=99.57  E-value=4.9e-14  Score=106.95  Aligned_cols=106  Identities=26%  Similarity=0.365  Sum_probs=94.3

Q ss_pred             CccccCCCcHHHHHHHHHhcCcceEEEEcCCCcEEEEeeHHHHHHHHHhcCCchhhhhHhhhcCCCCeeeCCCccHHHHH
Q 019775          221 LPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRRTLKASGEGIFKLTVGEMCNRSPRTIGPDAMAVEAM  300 (336)
Q Consensus       221 ~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~it~~dl~~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~l~~~~  300 (336)
                      +++++++.++.++.+.|.+++++.+||+|++|+++|+++.++++..... .    ..++.++|.+++..+.+++++++++
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~~~~~-~----~~~~~~~~~~~~~~v~~~~~l~~~~   78 (110)
T cd04605           4 VVTISEDASIKEAAKLMIEENINHLPVVDEDGRLVGIVTSWDISKAVAR-D----KKSVEDIMTRNVITATPDEPIDVAA   78 (110)
T ss_pred             CEEECCCCCHHHHHHHHHhCCCceEEEECCCCcEEEEEeHHHHHHHHhh-C----ccCHHHhcCCCCeEECCCCcHHHHH
Confidence            4578999999999999999899999999988999999999999876543 1    2358888888888999999999999


Q ss_pred             HHhcCCCCCccEeEEEeCCCcEEEEEehhhHhh
Q 019775          301 QKMESPPSPVQFLPVINRQNILIGIVTLHGLVS  333 (336)
Q Consensus       301 ~~~~~~~~~~~~l~Vv~~~~~~iGiit~~di~~  333 (336)
                      +.|.++  +...+||++++|+++|+|++.|+++
T Consensus        79 ~~~~~~--~~~~~~Vv~~~~~~~G~v~~~di~~  109 (110)
T cd04605          79 RKMERH--NISALPVVDAENRVIGIITSEDISK  109 (110)
T ss_pred             HHHHHh--CCCEEeEECCCCcEEEEEEHHHhhh
Confidence            999998  8899999998899999999999975

Met2 is a key enzyme in the biosynthesis of methionine. It encodes a homoserine transacetylase involved in converting homoserine to O-acetyl homoserine. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04604 CBS_pair_KpsF_GutQ_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with KpsF/GutQ domains in the API [A5P (D-arabinose 5-phosphate) isomerase] protein

Probab=99.57  E-value=4.9e-14  Score=107.57  Aligned_cols=110  Identities=39%  Similarity=0.700  Sum_probs=96.7

Q ss_pred             CccccCCCcHHHHHHHHHhcCcceEEEEcCCCcEEEEeeHHHHHHHHHhcCCchhhhhHhhhcCCCCeeeCCCccHHHHH
Q 019775          221 LPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRRTLKASGEGIFKLTVGEMCNRSPRTIGPDAMAVEAM  300 (336)
Q Consensus       221 ~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~it~~dl~~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~l~~~~  300 (336)
                      +++++++.++.++.+.+.+.+++.+||+|++|+++|+++..++...+.... .....++.++|.+.+..+.+++++.+++
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~~i~~~~~~~~-~~~~~~v~~~~~~~~~~v~~~~~~~~~~   82 (114)
T cd04604           4 LPLVSPDTSLKDALLEMSRKGLGMTAVVDEDGRLVGIFTDGDLRRALEKGL-DILTLPVADVMTRNPKTIDPDALAAEAL   82 (114)
T ss_pred             ccccCCCCcHHHHHHHHHhcCccEEEEEcCCCCEEEEechHHHHHHHhccC-ccccCCHHHhhccCCeEECCCCcHHHHH
Confidence            568999999999999998888899999998899999999999998775422 1123478999988889999999999999


Q ss_pred             HHhcCCCCCccEeEEEeCCCcEEEEEehhhHhh
Q 019775          301 QKMESPPSPVQFLPVINRQNILIGIVTLHGLVS  333 (336)
Q Consensus       301 ~~~~~~~~~~~~l~Vv~~~~~~iGiit~~di~~  333 (336)
                      +.|.++  +...+||++++|+++|+|+..||++
T Consensus        83 ~~~~~~--~~~~~~Vv~~~~~~iG~it~~di~~  113 (114)
T cd04604          83 ELMEEN--KITALPVVDDNGRPVGVLHIHDLLR  113 (114)
T ss_pred             HHHHHc--CCCEEEEECCCCCEEEEEEHHHhhc
Confidence            999988  8899999997799999999999986

These APIs catalyze the conversion of the pentose pathway intermediate D-ribulose 5-phosphate into A5P, a precursor of 3-deoxy-D-manno-octulosonate, which is an integral carbohydrate component of various glycolipids coating the surface of the outer membrane of Gram-negative bacteria, including lipopolysaccharide and many group 2 K-antigen capsules. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other funct

>cd04801 CBS_pair_M50_like This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the metalloprotease peptidase M50

Probab=99.57  E-value=3.1e-14  Score=108.89  Aligned_cols=108  Identities=19%  Similarity=0.222  Sum_probs=92.2

Q ss_pred             CccccCCCcHHHHHHHHHhcC-cceEEEEcCCCcEEEEeeHHHHHHHHHhcCCchhhhhHhhhcCC--CCeeeCCCccHH
Q 019775          221 LPVCKEGDLIMDQLVELTSKG-CGCLLVIDEEYHLIGTFTDGDLRRTLKASGEGIFKLTVGEMCNR--SPRTIGPDAMAV  297 (336)
Q Consensus       221 ~~~~~~~~~v~~~~~~~~~~~-~~~ipVvd~~~~~~G~it~~dl~~~~~~~~~~~~~~~i~~~~~~--~~~~v~~~~~l~  297 (336)
                      +++++++.++.++.+.|.+.+ .+.+||+|++|+++|+++.+||........   ...++.++|.+  .+..+.+++++.
T Consensus         3 ~~~~~~~~~l~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~dl~~~~~~~~---~~~~v~~~~~~~~~~~~v~~~~~l~   79 (114)
T cd04801           3 FPTVPAHLTLREFVREYVLGSNQRRFVVVDNEGRYVGIISLADLRAIPTSQW---AQTTVIQVMTPAAKLVTVLSEESLA   79 (114)
T ss_pred             cceeCCCCCHHHHHHHHhccCCceeEEEEcCCCcEEEEEEHHHHHHHHHhhc---cccchhhhhcccccceEECCCCcHH
Confidence            568999999999999997664 889999998899999999999998664321   13567888864  256899999999


Q ss_pred             HHHHHhcCCCCCccEeEEEeCCCcEEEEEehhhHhh
Q 019775          298 EAMQKMESPPSPVQFLPVINRQNILIGIVTLHGLVS  333 (336)
Q Consensus       298 ~~~~~~~~~~~~~~~l~Vv~~~~~~iGiit~~di~~  333 (336)
                      ++++.|.++  +...+||++++|+++|+|++.||++
T Consensus        80 ~a~~~~~~~--~~~~l~Vv~~~~~~~Gvl~~~di~~  113 (114)
T cd04801          80 EVLKLLEEQ--GLDELAVVEDSGQVIGLITEADLLR  113 (114)
T ss_pred             HHHHHHHHC--CCCeeEEEcCCCcEEEEEeccceec
Confidence            999999999  8999999998899999999999875

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04596 CBS_pair_DRTGG_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream

Probab=99.57  E-value=3e-14  Score=107.87  Aligned_cols=105  Identities=20%  Similarity=0.310  Sum_probs=94.1

Q ss_pred             CccccCCCcHHHHHHHHHhcCcceEEEEcCCCcEEEEeeHHHHHHHHHhcCCchhhhhHhhhcCCCCeeeCCCccHHHHH
Q 019775          221 LPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRRTLKASGEGIFKLTVGEMCNRSPRTIGPDAMAVEAM  300 (336)
Q Consensus       221 ~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~it~~dl~~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~l~~~~  300 (336)
                      +.++++++++.++.+.|.+++.+.+||+|++|+++|+++..++....       ...++.++|.+.+.++.+++++.+++
T Consensus         4 ~~~~~~~~~~~~a~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~~~-------~~~~v~~~~~~~~~~v~~~~~l~~~~   76 (108)
T cd04596           4 TGYLTTTDTVKDWHELNKETGHSRFPVVDEKNKVVGIVTSKDVAGKD-------PDTTIEKVMTKNPITVNPKTSVASVA   76 (108)
T ss_pred             cEEeCCCCCHHHHHHHHHHcCCCceeEECCCCeEEEEecHHHHhccc-------ccccHHHHhcCCCeEECCCCCHHHHH
Confidence            56889999999999999998889999999889999999999997531       14578889988889999999999999


Q ss_pred             HHhcCCCCCccEeEEEeCCCcEEEEEehhhHhhc
Q 019775          301 QKMESPPSPVQFLPVINRQNILIGIVTLHGLVSA  334 (336)
Q Consensus       301 ~~~~~~~~~~~~l~Vv~~~~~~iGiit~~di~~~  334 (336)
                      +.|.++  +...+||++++|+++|+++..|++++
T Consensus        77 ~~~~~~--~~~~~~Vv~~~~~~~G~it~~di~~~  108 (108)
T cd04596          77 HMMIWE--GIEMLPVVDDNKKLLGIISRQDVLKA  108 (108)
T ss_pred             HHHHHc--CCCeeeEEcCCCCEEEEEEHHHhhcC
Confidence            999998  89999999988999999999999863

The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04624 CBS_pair_11 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.56  E-value=7.4e-14  Score=106.30  Aligned_cols=110  Identities=22%  Similarity=0.360  Sum_probs=96.3

Q ss_pred             CccccCCCcHHHHHHHHHhcCcceEEEEcCCCcEEEEeeHHHHHHHHHhcCCchhhhhHhhhcCCCCeeeCCCccHHHHH
Q 019775          221 LPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRRTLKASGEGIFKLTVGEMCNRSPRTIGPDAMAVEAM  300 (336)
Q Consensus       221 ~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~it~~dl~~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~l~~~~  300 (336)
                      +.+++++.+++++.+.|.+.+++.+||+|++++++|+++..+++..+....  ....++.++|.+++..+.+++++.+++
T Consensus         3 ~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~~l~~~~~~~~--~~~~~v~~~~~~~~~~v~~~~~~~~~~   80 (112)
T cd04624           3 VVTVDPDTSIREAAKLMAEENVGSVVVVDPDERPIGIVTERDIVRAVAAGI--DLDTPVSEIMTRDLVTVDPDEPVAEAA   80 (112)
T ss_pred             CeEECCCCcHHHHHHHHHHcCCCEEEEECCCCCEEEEeeHHHHHHHHhccC--CCccCHHHhccCCCEEECCCCcHHHHH
Confidence            457899999999999999889999999998899999999999988765422  124568888888889999999999999


Q ss_pred             HHhcCCCCCccEeEEEeCCCcEEEEEehhhHhhc
Q 019775          301 QKMESPPSPVQFLPVINRQNILIGIVTLHGLVSA  334 (336)
Q Consensus       301 ~~~~~~~~~~~~l~Vv~~~~~~iGiit~~di~~~  334 (336)
                      +.|.++  +...+||++++|+++|++++.|+++.
T Consensus        81 ~~~~~~--~~~~~~Vv~~~g~~~Gilt~~dl~~~  112 (112)
T cd04624          81 KLMRKN--NIRHHLVVDKGGELVGVISIRDLVRE  112 (112)
T ss_pred             HHHHHc--CccEEEEEcCCCcEEEEEEHHHhccC
Confidence            999988  78899999988999999999999863

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04613 CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC

Probab=99.56  E-value=5.9e-14  Score=107.04  Aligned_cols=111  Identities=21%  Similarity=0.321  Sum_probs=96.9

Q ss_pred             CccccCCCcHHHHHHHHHhcCcceEEEEcCCCcEEEEeeHHHHHHHHHhcCCchhhhhHhhhcCCCCeeeCCCccHHHHH
Q 019775          221 LPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRRTLKASGEGIFKLTVGEMCNRSPRTIGPDAMAVEAM  300 (336)
Q Consensus       221 ~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~it~~dl~~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~l~~~~  300 (336)
                      +++++++.++.++.+.|.+.+++.+||+|++|+++|+++.++|.....+.. .....++.++|.+++.++.+++++.+++
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~G~v~~~~l~~~~~~~~-~~~~~~v~~~~~~~~~~v~~~~~~~~~~   81 (114)
T cd04613           3 VVTIPEDTPLNELLDVIAHSPENNFPVVDDDGRLVGIVSLDDIREILFDPS-LYDLVVASDIMTKPPVVVYPEDSLEDAL   81 (114)
T ss_pred             ceeeCCCCcHHHHHHHHHhCCCcceeEECCCCCEEEEEEHHHHHHHHhccc-ccccEEHHHhccCCCcEEcCCCCHHHHH
Confidence            458999999999999999989999999998899999999999987664321 1113678899999999999999999999


Q ss_pred             HHhcCCCCCccEeEEEeC-CCcEEEEEehhhHhhc
Q 019775          301 QKMESPPSPVQFLPVINR-QNILIGIVTLHGLVSA  334 (336)
Q Consensus       301 ~~~~~~~~~~~~l~Vv~~-~~~~iGiit~~di~~~  334 (336)
                      +.|.+.  +...+||+++ .|+++|+++..|++++
T Consensus        82 ~~~~~~--~~~~~~Vv~~~~~~~~Gvvt~~di~~~  114 (114)
T cd04613          82 KKFEDS--DYEQLPVVDDDPGKLLGILSRSDLLSA  114 (114)
T ss_pred             HHHhhC--CccEeeEEeCCCCEEEEEEEhHHhhcC
Confidence            999998  8999999987 7999999999999863

SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase a

>cd04615 CBS_pair_2 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.56  E-value=5e-14  Score=107.42  Aligned_cols=109  Identities=23%  Similarity=0.261  Sum_probs=94.7

Q ss_pred             ccccCCCcHHHHHHHHHhcCcceEEEEcCCCcEEEEeeHHHHHHHHHhcCCchhhhhHhhhcCCCCeeeCCCccHHHHHH
Q 019775          222 PVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRRTLKASGEGIFKLTVGEMCNRSPRTIGPDAMAVEAMQ  301 (336)
Q Consensus       222 ~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~it~~dl~~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~l~~~~~  301 (336)
                      ..+.+++++.++++.+.+.+.+.+||+|++++++|+++.+++........ .....++.++|.+++.++..++++.++++
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~vvd~~~~~~G~v~~~dl~~~~~~~~-~~~~~~i~~~~~~~~~~v~~~~~l~~~~~   82 (113)
T cd04615           4 SCVVLNTDIARAVAEMYTSGSRALPVVDDKKRLVGIITRYDVLSYALESE-ELKDAKVREVMNSPVITIDANDSIAKARW   82 (113)
T ss_pred             EEeeCCCcHHHHHHHHHHcCCceEeEEcCCCCEEEEEEHHHHHHhhhhhh-hhcCCcHHHhccCCceEECCCCcHHHHHH
Confidence            36899999999999999999999999998899999999999987544321 11245788899888899999999999999


Q ss_pred             HhcCCCCCccEeEEEeCCCcEEEEEehhhHhh
Q 019775          302 KMESPPSPVQFLPVINRQNILIGIVTLHGLVS  333 (336)
Q Consensus       302 ~~~~~~~~~~~l~Vv~~~~~~iGiit~~di~~  333 (336)
                      .|.++  +...+||++++|+++|+++..|+++
T Consensus        83 ~~~~~--~~~~~~Vvd~~g~~~Gvvt~~dl~~  112 (113)
T cd04615          83 LMSNN--NISRLPVLDDKGKVGGIVTEDDILR  112 (113)
T ss_pred             HHHHc--CCCeeeEECCCCeEEEEEEHHHhhc
Confidence            99988  8889999998899999999999975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04607 CBS_pair_NTP_transferase_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain associated with the NTP (Nucleotidyl transferase) domain downstream

Probab=99.56  E-value=6.5e-14  Score=106.90  Aligned_cols=108  Identities=30%  Similarity=0.476  Sum_probs=95.0

Q ss_pred             ccccCCCcHHHHHHHHHhcCcceEEEEcCCCcEEEEeeHHHHHHHHHhcCCchhhhhHhhhcCCCCeeeCCCccHHHHHH
Q 019775          222 PVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRRTLKASGEGIFKLTVGEMCNRSPRTIGPDAMAVEAMQ  301 (336)
Q Consensus       222 ~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~it~~dl~~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~l~~~~~  301 (336)
                      .+++++.++.++.+.|.+.+...+||++++|+++|+++.+|+...+.....  ...++.++|.+.+..+.+++++.++++
T Consensus         5 ~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~dl~~~~~~~~~--~~~~v~~~~~~~~~~v~~~~~l~~~~~   82 (113)
T cd04607           5 LLVSPDASILDALRKIDKNALRIVLVVDENGRLLGTVTDGDIRRALLKGLS--LDDPVSEVMNRNPITAKVGSSREEILA   82 (113)
T ss_pred             eEECCCCCHHHHHHHHHhcCcCEEEEECCCCCEEEEEEcHHHHHHHhcCCC--cCCCHHHhhcCCCEEEcCCCCHHHHHH
Confidence            468999999999999998888999999988999999999999876653221  135688999888889999999999999


Q ss_pred             HhcCCCCCccEeEEEeCCCcEEEEEehhhHhh
Q 019775          302 KMESPPSPVQFLPVINRQNILIGIVTLHGLVS  333 (336)
Q Consensus       302 ~~~~~~~~~~~l~Vv~~~~~~iGiit~~di~~  333 (336)
                      .|.+.  +...+||++++|+++|+||+.|++.
T Consensus        83 ~~~~~--~~~~~~Vv~~~~~~~Gvit~~di~~  112 (113)
T cd04607          83 LMRER--SIRHLPILDEEGRVVGLATLDDLLS  112 (113)
T ss_pred             HHHHC--CCCEEEEECCCCCEEEEEEhHHhcc
Confidence            99999  8999999998899999999999975

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04803 CBS_pair_15 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.56  E-value=5.4e-14  Score=108.78  Aligned_cols=111  Identities=25%  Similarity=0.325  Sum_probs=96.5

Q ss_pred             CccccCCCcHHHHHHHHHhcCcceEEEEcCCCcEEEEeeHHHHHHHHHhcCCc--------hhhhhHhhhcCCCCeeeCC
Q 019775          221 LPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRRTLKASGEG--------IFKLTVGEMCNRSPRTIGP  292 (336)
Q Consensus       221 ~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~it~~dl~~~~~~~~~~--------~~~~~i~~~~~~~~~~v~~  292 (336)
                      ++++.++.++.++.+.|.+.+++.+||++++|+++|+++..+++..+......        ....++.+++..++.++.+
T Consensus         3 ~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~   82 (122)
T cd04803           3 VVTLSEDDSLADAEELMREHRIRHLPVVNEDGKLVGLLTQRDLLRAALSSLSDNGEESLTKERDVPVAEVMKTDVLTVTP   82 (122)
T ss_pred             CEEeCCCCcHHHHHHHHHHcCcccccEECCCCCEEEEEEHHHHHHHhccccccccccccccccCcCHHHhhCCCCeEeCC
Confidence            45789999999999999999999999999889999999999999866432110        1245788899888999999


Q ss_pred             CccHHHHHHHhcCCCCCccEeEEEeCCCcEEEEEehhhHhh
Q 019775          293 DAMAVEAMQKMESPPSPVQFLPVINRQNILIGIVTLHGLVS  333 (336)
Q Consensus       293 ~~~l~~~~~~~~~~~~~~~~l~Vv~~~~~~iGiit~~di~~  333 (336)
                      ++++.++++.|.+.  +.+.+||++++|+++|+||..|+++
T Consensus        83 ~~~~~~~~~~~~~~--~~~~~~Vv~~~~~~~Gvit~~dl~~  121 (122)
T cd04803          83 DTPLREAAEIMVEN--KIGCLPVVDDKGTLVGIITRSDFLR  121 (122)
T ss_pred             CCcHHHHHHHHHHc--CCCeEEEEcCCCCEEEEEEHHHhhc
Confidence            99999999999998  8889999998899999999999986

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04629 CBS_pair_16 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.56  E-value=3.6e-14  Score=108.35  Aligned_cols=111  Identities=19%  Similarity=0.214  Sum_probs=95.8

Q ss_pred             CccccCCCcHHHHHHHHHhcCcceEEEEcCCCcEEEEeeHHHHHHHHHhcC-CchhhhhHhhhcCCCCeeeCCCccHHHH
Q 019775          221 LPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRRTLKASG-EGIFKLTVGEMCNRSPRTIGPDAMAVEA  299 (336)
Q Consensus       221 ~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~it~~dl~~~~~~~~-~~~~~~~i~~~~~~~~~~v~~~~~l~~~  299 (336)
                      +.++++++++.++.+.|.+.+.+.+||++++++++|+++..++...+.... ......++.++|.+++..+.+++++.++
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~v~~~~l~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~~   82 (114)
T cd04629           3 PVTFTPDMSVTEAVEKLLKSKISGGPVVDDNGNLVGFLSEQDCLKQLLESSYHCDGVATVRDIMTTEVLTVSPDDSIVDL   82 (114)
T ss_pred             CeEeCCCCCHHHHHHHHHhcCCCCccEECCCCeEEEEeehHHHHHHhhhhhhccCCCccHHHHhccCceEECCCCcHHHH
Confidence            457899999999999998888889999998899999999999987664321 1112457889998888999999999999


Q ss_pred             HHHhcCCCCCccEeEEEeCCCcEEEEEehhhHhhc
Q 019775          300 MQKMESPPSPVQFLPVINRQNILIGIVTLHGLVSA  334 (336)
Q Consensus       300 ~~~~~~~~~~~~~l~Vv~~~~~~iGiit~~di~~~  334 (336)
                      ++.|.++  +...+||+++ |+++|+||++|++++
T Consensus        83 ~~~~~~~--~~~~~~Vv~~-~~~~Gvit~~di~~~  114 (114)
T cd04629          83 AQLMLKA--KPKRYPVVDD-GKLVGQISRRDVLRA  114 (114)
T ss_pred             HHHHHHh--CCCccCEEEC-CEEEEEEEHHHHhcC
Confidence            9999999  8889999998 999999999999864

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04621 CBS_pair_8 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.56  E-value=5.8e-14  Score=110.95  Aligned_cols=111  Identities=19%  Similarity=0.324  Sum_probs=96.1

Q ss_pred             CccccCCCcHHHHHHHHHhcCcceEEEEcCCCcEEEEeeHHHHHHHHHhcCCch----------------------hhhh
Q 019775          221 LPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRRTLKASGEGI----------------------FKLT  278 (336)
Q Consensus       221 ~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~it~~dl~~~~~~~~~~~----------------------~~~~  278 (336)
                      +++++++.++.++++.|.+.+.+.+||+|++|+++|+++..++...........                      ...+
T Consensus         3 ~~~v~~~~~~~~a~~~~~~~~~~~l~V~d~~~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (135)
T cd04621           3 IATVHPEHSLLHVVDEMEKNGVGRVIVVDDNGKPVGVITYRDLAFAEFEDNERGLPKKSIKMKRKAGQKRYRYVKEVPLV   82 (135)
T ss_pred             ceEeCCCCcHHHHHHHHHHcCCCcceEECCCCCEEEEEeHHHHHHHhhcccccccchhhhhhhhhccccccccccccccc
Confidence            457899999999999999989999999998899999999999998764321110                      1347


Q ss_pred             HhhhcCCCCeeeCCCccHHHHHHHhcCCCCCccEeEEEeCCCcEEEEEehhhHhhc
Q 019775          279 VGEMCNRSPRTIGPDAMAVEAMQKMESPPSPVQFLPVINRQNILIGIVTLHGLVSA  334 (336)
Q Consensus       279 i~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~l~Vv~~~~~~iGiit~~di~~~  334 (336)
                      +.++|.+++..+.+++++.++++.|.++  +...+||+++ |+++|+|+..|+++.
T Consensus        83 v~~~~~~~~~~v~~~~~l~~~~~~~~~~--~~~~l~Vv~~-~~~~Gvit~~di~~~  135 (135)
T cd04621          83 AEDIMTEEIITVSPNDDVVDAAKLMLEA--NISGLPVVDN-DNIVGVITKTDICRE  135 (135)
T ss_pred             HHHhcCCCCeEECCCCCHHHHHHHHHHc--CCCEEEEEeC-CEEEEEEEHHHHhhC
Confidence            8899988889999999999999999998  8999999998 999999999999863

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04614 CBS_pair_1 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.56  E-value=3.6e-14  Score=105.18  Aligned_cols=94  Identities=24%  Similarity=0.325  Sum_probs=85.5

Q ss_pred             CccccCCCcHHHHHHHHHhcCcceEEEEcCCCcEEEEeeHHHHHHHHHhcCCchhhhhHhhhcCCCCeeeCCCccHHHHH
Q 019775          221 LPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRRTLKASGEGIFKLTVGEMCNRSPRTIGPDAMAVEAM  300 (336)
Q Consensus       221 ~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~it~~dl~~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~l~~~~  300 (336)
                      +++++++.++.++++.|.+.+.+.+||+|++|+++|+++.+|+....                  .+.++.+++++.+++
T Consensus         3 ~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~~~~~~Giv~~~dl~~~~------------------~~~~v~~~~~l~~a~   64 (96)
T cd04614           3 VPTVWEETPLPVAVRIMELANVKALPVLDDDGKLSGIITERDLIAKS------------------EVVTATKRTTVSECA   64 (96)
T ss_pred             ccEeCCCCcHHHHHHHHHHcCCCeEEEECCCCCEEEEEEHHHHhcCC------------------CcEEecCCCCHHHHH
Confidence            56889999999999999988999999999889999999999998621                  167899999999999


Q ss_pred             HHhcCCCCCccEeEEEeCCCcEEEEEehhhHhhc
Q 019775          301 QKMESPPSPVQFLPVINRQNILIGIVTLHGLVSA  334 (336)
Q Consensus       301 ~~~~~~~~~~~~l~Vv~~~~~~iGiit~~di~~~  334 (336)
                      +.|.++  +.+.+||++++|+++|+||++|++++
T Consensus        65 ~~m~~~--~~~~lpVv~~~~~~~Giit~~di~~~   96 (96)
T cd04614          65 QKMKRN--RIEQIPIINGNDKLIGLLRDHDLLKP   96 (96)
T ss_pred             HHHHHh--CCCeeeEECCCCcEEEEEEHHHhhcC
Confidence            999999  99999999988999999999999874

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04590 CBS_pair_CorC_HlyC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the CorC_HlyC domain

Probab=99.56  E-value=8e-14  Score=105.94  Aligned_cols=107  Identities=20%  Similarity=0.296  Sum_probs=92.8

Q ss_pred             CccccCCCcHHHHHHHHHhcCcceEEEEcCC-CcEEEEeeHHHHHHHHHhcCCchhhhhHhhhcCCCCeeeCCCccHHHH
Q 019775          221 LPVCKEGDLIMDQLVELTSKGCGCLLVIDEE-YHLIGTFTDGDLRRTLKASGEGIFKLTVGEMCNRSPRTIGPDAMAVEA  299 (336)
Q Consensus       221 ~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~-~~~~G~it~~dl~~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~l~~~  299 (336)
                      +.+++++.+++++.+.|.+.+++.+||++++ |+++|+++..++.........   ..++.+++ +++.++.+++++.++
T Consensus         3 ~~~i~~~~~i~~a~~~~~~~~~~~~~v~~~~~~~~~G~v~~~~l~~~~~~~~~---~~~~~~~~-~~~~~v~~~~~l~~~   78 (111)
T cd04590           3 IVALDADDTLEEILELIAESGHSRFPVYDGDLDNIIGVVHVKDLLRALAEGEE---DLDLRDLL-RPPLFVPESTPLDDL   78 (111)
T ss_pred             eEEEcCCCCHHHHHHHHhhCCCceEEEECCCCceEEEEEEHHHHHHHHHcCCC---cCCHHHHh-cCCeecCCCCcHHHH
Confidence            4578999999999999998889999999987 999999999999987654221   14566666 457789999999999


Q ss_pred             HHHhcCCCCCccEeEEEeCCCcEEEEEehhhHhh
Q 019775          300 MQKMESPPSPVQFLPVINRQNILIGIVTLHGLVS  333 (336)
Q Consensus       300 ~~~~~~~~~~~~~l~Vv~~~~~~iGiit~~di~~  333 (336)
                      ++.|.++  +.+.+||++++|+++|+||+.|+++
T Consensus        79 ~~~~~~~--~~~~~~Vv~~~~~~~Gvit~~di~~  110 (111)
T cd04590          79 LEEMRKE--RSHMAIVVDEYGGTAGLVTLEDILE  110 (111)
T ss_pred             HHHHHhc--CCcEEEEEECCCCEEEEeEHHHhhc
Confidence            9999999  8999999999899999999999986

CorC_HlyC is a transporter associated domain. This small domain is found in Na+/H+ antiporters, in proteins involved in magnesium and cobalt efflux, and in association with some proteins of unknown function. The function of the CorC_HlyC domain is uncertain but it might be involved in modulating transport of ion substrates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role,

>cd04627 CBS_pair_14 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.55  E-value=7.1e-14  Score=108.45  Aligned_cols=110  Identities=18%  Similarity=0.196  Sum_probs=91.1

Q ss_pred             CccccCCCcHHHHHHHHHhcCcceEEEEcCC-CcEEEEeeHHHHHHHHHhcCCc----hh----hhhHhhhcCCCCeeeC
Q 019775          221 LPVCKEGDLIMDQLVELTSKGCGCLLVIDEE-YHLIGTFTDGDLRRTLKASGEG----IF----KLTVGEMCNRSPRTIG  291 (336)
Q Consensus       221 ~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~-~~~~G~it~~dl~~~~~~~~~~----~~----~~~i~~~~~~~~~~v~  291 (336)
                      +.+++++.++.++.+.|.+.++..+||+|++ |+++|+++..|++..+......    ..    .....+++.+++.++.
T Consensus         3 ~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~~~~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~   82 (123)
T cd04627           3 FIPVPSTASLFQAIEILGSGGIHRVAVTEEESGEVIGILSQRRLVEFLWENARSFPGLDPLYPIPLRDLTIGTSDVISIN   82 (123)
T ss_pred             ceecCCCCCHHHHHHHHhhCCcceEEEEeCCCCcEEEEEEHHHHHHHHHHhHHhccchhhhhhhhhhhcccCcCCceEeC
Confidence            5678999999999999998889999999987 8999999999998865432110    00    0112245677788999


Q ss_pred             CCccHHHHHHHhcCCCCCccEeEEEeCCCcEEEEEehhhHh
Q 019775          292 PDAMAVEAMQKMESPPSPVQFLPVINRQNILIGIVTLHGLV  332 (336)
Q Consensus       292 ~~~~l~~~~~~~~~~~~~~~~l~Vv~~~~~~iGiit~~di~  332 (336)
                      +++++.++++.|.++  +...+||+|++|+++|+||++|+-
T Consensus        83 ~~~~l~~a~~~m~~~--~~~~lpVvd~~~~~vGiit~~di~  121 (123)
T cd04627          83 GDQPLIDALHLMHNE--GISSVAVVDNQGNLIGNISVTDVR  121 (123)
T ss_pred             CCCCHHHHHHHHHHc--CCceEEEECCCCcEEEEEeHHHhh
Confidence            999999999999999  899999999889999999999974

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04608 CBS_pair_PALP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream

Probab=99.55  E-value=3.9e-14  Score=110.24  Aligned_cols=113  Identities=19%  Similarity=0.132  Sum_probs=94.9

Q ss_pred             CccccCCCcHHHHHHHHHhcCcceEEEEcCCCcEEEEeeHHHHHHHHHhcCCchhhhhHhhhcCCCCeeeCCCccHHHHH
Q 019775          221 LPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRRTLKASGEGIFKLTVGEMCNRSPRTIGPDAMAVEAM  300 (336)
Q Consensus       221 ~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~it~~dl~~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~l~~~~  300 (336)
                      ++++.++.++.++++.|.+++...+||+|++|+++|+++.++++..+..... ....++.++|.+++..+.+++++.++.
T Consensus         4 ~~~v~~~~~v~~a~~~m~~~~~~~~~Vvd~~~~~~Gii~~~dl~~~~~~~~~-~~~~~v~~im~~~~~~v~~~~~~~~v~   82 (124)
T cd04608           4 PVTVLPTVTCAEAIEILKEKGFDQLPVVDESGKILGMVTLGNLLSSLSSGKV-QPSDPVSKALYKQFKRVNKNDTLGKLS   82 (124)
T ss_pred             CEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCCEEEEEEHHHHHHHHHHhcc-CCCCcHHHHhhccceecCCCCCHHHHH
Confidence            4588999999999999999999999999988999999999999987654322 235789999999999999999999999


Q ss_pred             HHhcCC-------CCCccEeEEEeCCCcEEEEEehhhHhhc
Q 019775          301 QKMESP-------PSPVQFLPVINRQNILIGIVTLHGLVSA  334 (336)
Q Consensus       301 ~~~~~~-------~~~~~~l~Vv~~~~~~iGiit~~di~~~  334 (336)
                      +.+..+       ..+...+||++++|+++|+||..|++++
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~Givt~~Dl~~~  123 (124)
T cd04608          83 RILETDAFLLVFFEQISSAAIGKEKQEKPIGIVTKIDLLSY  123 (124)
T ss_pred             hhcccCCceEEEeccccccccccccccceEEEEehhHhhhh
Confidence            965432       0045677888888999999999999875

The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a poten

>cd04595 CBS_pair_DHH_polyA_Pol_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with an upstream DHH domain which performs a phosphoesterase function and a downstream polyA polymerase domain

Probab=99.55  E-value=9e-14  Score=105.52  Aligned_cols=107  Identities=21%  Similarity=0.274  Sum_probs=94.7

Q ss_pred             CccccCCCcHHHHHHHHHhcCcceEEEEcCCCcEEEEeeHHHHHHHHHhcCCchhhhhHhhhcCCCCeeeCCCccHHHHH
Q 019775          221 LPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRRTLKASGEGIFKLTVGEMCNRSPRTIGPDAMAVEAM  300 (336)
Q Consensus       221 ~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~it~~dl~~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~l~~~~  300 (336)
                      +++++.+.++.++.+.|.+.+++.+||+|+ |+++|+++..++........   ...++.++|.+++.++.+++++.+++
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~-~~~~G~v~~~dl~~~~~~~~---~~~~~~~~~~~~~~~v~~~~~l~~~~   79 (110)
T cd04595           4 VKTVRPEATIEEARELLLRYGHTALPVVEG-GRVVGIISRRDVEKALRHGL---GHAPVKDYMSTDVVTVPPDTPLSEVQ   79 (110)
T ss_pred             ceEeCCCCcHHHHHHHHHHcCCCeeeEeeC-CEEEEEEEHHHHHHHHhccc---ccCcHHHHhcCCCEEECCCCcHHHHH
Confidence            458899999999999999888899999997 99999999999987654321   25678899989999999999999999


Q ss_pred             HHhcCCCCCccEeEEEeCCCcEEEEEehhhHhhc
Q 019775          301 QKMESPPSPVQFLPVINRQNILIGIVTLHGLVSA  334 (336)
Q Consensus       301 ~~~~~~~~~~~~l~Vv~~~~~~iGiit~~di~~~  334 (336)
                      +.|.++  +.+.+||++ +|+++|+||+.|++++
T Consensus        80 ~~~~~~--~~~~~~V~~-~~~~~Gvvt~~di~~~  110 (110)
T cd04595          80 ELMVEH--DIGRVPVVE-DGRLVGIVTRTDLLRT  110 (110)
T ss_pred             HHHHHc--CCCeeEEEe-CCEEEEEEEhHHhhcC
Confidence            999999  899999999 5999999999999863

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04622 CBS_pair_9 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.55  E-value=9.5e-14  Score=105.84  Aligned_cols=111  Identities=29%  Similarity=0.361  Sum_probs=94.2

Q ss_pred             CccccCCCcHHHHHHHHHhcCcceEEEEcCCCcEEEEeeHHHHHHHHHhcCCchhhhhHhhhcCCCCeeeCCCccHHHHH
Q 019775          221 LPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRRTLKASGEGIFKLTVGEMCNRSPRTIGPDAMAVEAM  300 (336)
Q Consensus       221 ~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~it~~dl~~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~l~~~~  300 (336)
                      +++++++.++.++.+.|.+.+++.+||+++ |+++|+++..++..............++.++|.+.+..+.+++++.+++
T Consensus         3 ~~~v~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~G~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~   81 (113)
T cd04622           3 VVTVSPDDTIREAARLMREHDVGALPVCEN-DRLVGIVTDRDIVVRAVAEGRDPDTTTVGDVMTRGVVTVTEDDDVDEAA   81 (113)
T ss_pred             CEEECCCCcHHHHHHHHHHcCCCEEEEeeC-CEEEEEEEhHHHHHHHhhccCCcccCCHHHhccCCccEECCCCCHHHHH
Confidence            567899999999999999989999999997 9999999999987443322222222348899988899999999999999


Q ss_pred             HHhcCCCCCccEeEEEeCCCcEEEEEehhhHhhc
Q 019775          301 QKMESPPSPVQFLPVINRQNILIGIVTLHGLVSA  334 (336)
Q Consensus       301 ~~~~~~~~~~~~l~Vv~~~~~~iGiit~~di~~~  334 (336)
                      +.|.+.  +...+||++++|+++|+|++.|++++
T Consensus        82 ~~~~~~--~~~~~~V~~~~~~~~G~it~~di~~~  113 (113)
T cd04622          82 RLMREH--QVRRLPVVDDDGRLVGIVSLGDLARA  113 (113)
T ss_pred             HHHHHc--CCCeeeEECCCCcEEEEEEHHHhhcC
Confidence            999988  88999999887999999999999864

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04625 CBS_pair_12 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.55  E-value=1.2e-13  Score=105.11  Aligned_cols=110  Identities=22%  Similarity=0.452  Sum_probs=92.8

Q ss_pred             CccccCCCcHHHHHHHHHhcCcceEEEEcCCCcEEEEeeHHHHHHHHHhcCCchhhhhHhhhcCCCCeeeCCCccHHHHH
Q 019775          221 LPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRRTLKASGEGIFKLTVGEMCNRSPRTIGPDAMAVEAM  300 (336)
Q Consensus       221 ~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~it~~dl~~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~l~~~~  300 (336)
                      +++++++.++.++.+.|.+++...++|.+ +|+++|+++.+++..............++.++|.+.+..+.+++++.+++
T Consensus         3 ~~~v~~~~~~~~~~~~~~~~~~~~~~v~~-~~~~~G~v~~~dl~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~a~   81 (112)
T cd04625           3 IYTVAPETLLSEAVATMAEQDLGSLVVME-RGELVGLLTFREVLQAMAQHGAGVLDTTVRAIMNPEPIVASPDDSIDEVR   81 (112)
T ss_pred             cEEECCCCcHHHHHHHHHHcCCCeEEEee-CCEEEEEEEHHHHHHHHHhcCCchhcCCHHHHhCCCCeEECCCCCHHHHH
Confidence            56789999999999999887877777776 58999999999999876542211124578899988888999999999999


Q ss_pred             HHhcCCCCCccEeEEEeCCCcEEEEEehhhHhhc
Q 019775          301 QKMESPPSPVQFLPVINRQNILIGIVTLHGLVSA  334 (336)
Q Consensus       301 ~~~~~~~~~~~~l~Vv~~~~~~iGiit~~di~~~  334 (336)
                      +.|.++  +...+||+++ |+++|+||++|++++
T Consensus        82 ~~m~~~--~~~~l~Vv~~-~~~~Gvvt~~dl~~~  112 (112)
T cd04625          82 RLMVER--HLRYLPVLDG-GTLLGVISFHDVAKA  112 (112)
T ss_pred             HHHHHc--CCCeeeEEEC-CEEEEEEEHHHhhcC
Confidence            999998  8999999986 999999999999863

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04626 CBS_pair_13 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.55  E-value=8.5e-14  Score=105.85  Aligned_cols=108  Identities=22%  Similarity=0.284  Sum_probs=94.6

Q ss_pred             CccccCCCcHHHHHHHHHhcCcceEEEEcCCCcEEEEeeHHHHHHHHHhcCCchhhhhHhhhcCCCCeeeCCCccHHHHH
Q 019775          221 LPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRRTLKASGEGIFKLTVGEMCNRSPRTIGPDAMAVEAM  300 (336)
Q Consensus       221 ~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~it~~dl~~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~l~~~~  300 (336)
                      +++++++.++.++++.+.+.+++.+||+|++|+++|+++.+++........  ....++.++|.+++.++.+++++.+++
T Consensus         3 ~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~dl~~~~~~~~--~~~~~v~~~~~~~~~~v~~~~~l~~~~   80 (111)
T cd04626           3 FPTIDEDASIREALHEMLKYNTNEIIVKDNEEKLKGVVTFTDILDLDLFES--FLEKKVFNIVSQDVFYVNEEDTIDEAL   80 (111)
T ss_pred             ceEECCCccHHHHHHHHHHhCCCeEEEEcCCCCEEEEEehHHhHHHHhhcc--cccCcHHHHhcCCcEEEcCCCcHHHHH
Confidence            568899999999999999989999999998899999999999987544211  113468888888889999999999999


Q ss_pred             HHhcCCCCCccEeEEEeCCCcEEEEEehhhHhh
Q 019775          301 QKMESPPSPVQFLPVINRQNILIGIVTLHGLVS  333 (336)
Q Consensus       301 ~~~~~~~~~~~~l~Vv~~~~~~iGiit~~di~~  333 (336)
                      +.|.++  +...+||+++ |+++|+||..|+++
T Consensus        81 ~~~~~~--~~~~~~Vv~~-~~~~G~it~~di~~  110 (111)
T cd04626          81 DIMREK--QIGRLPVVDD-NKLIGVVRTKDILD  110 (111)
T ss_pred             HHHHHc--CCCeeeEeEC-CEEEEEEEhHHhcc
Confidence            999999  8999999998 99999999999975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04611 CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with a PAS domain, a GGDEF (DiGuanylate-Cyclase (DGC) domain, and a DUF1 domain downstream

Probab=99.54  E-value=1.1e-13  Score=105.09  Aligned_cols=108  Identities=19%  Similarity=0.369  Sum_probs=95.3

Q ss_pred             CccccCCCcHHHHHHHHHhcCcceEEEEcCCCcEEEEeeHHHHHHHHHhcCCchhhhhHhhhcCCCCeeeCCCccHHHHH
Q 019775          221 LPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRRTLKASGEGIFKLTVGEMCNRSPRTIGPDAMAVEAM  300 (336)
Q Consensus       221 ~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~it~~dl~~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~l~~~~  300 (336)
                      +++++++.++.++.+.|.+.+...+||+++ ++++|+++.++|.........  ...++.++|.+++..+.+++++.+++
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~-~~~~G~v~~~~l~~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~l~~~l   79 (111)
T cd04611           3 ILTCPPDTSLAEAASRMRERRISSIVVVDD-GRPLGIVTERDILRLLASGPD--LQTPVGEVMSSPLLTVPADTSLYDAR   79 (111)
T ss_pred             ceEECCCCcHHHHHHHHHHcCCCEEEEeeC-CEEEEEEeHHHHHHHHhcCCC--CCcCHHHhcCCCceEECCCCCHHHHH
Confidence            458899999999999999888899999986 899999999999987654221  24678899988889999999999999


Q ss_pred             HHhcCCCCCccEeEEEeCCCcEEEEEehhhHhh
Q 019775          301 QKMESPPSPVQFLPVINRQNILIGIVTLHGLVS  333 (336)
Q Consensus       301 ~~~~~~~~~~~~l~Vv~~~~~~iGiit~~di~~  333 (336)
                      +.|.+.  +...+||++++|+++|+|++.|+++
T Consensus        80 ~~~~~~--~~~~~~Vv~~~~~~~Gvi~~~di~~  110 (111)
T cd04611          80 QLMREH--GIRHLVVVDDDGELLGLLSQTDLLQ  110 (111)
T ss_pred             HHHHHc--CCeEEEEECCCCcEEEEEEhHHhhc
Confidence            999988  8889999998899999999999986

PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CB

>cd04642 CBS_pair_29 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.54  E-value=4.9e-14  Score=109.90  Aligned_cols=111  Identities=21%  Similarity=0.311  Sum_probs=92.0

Q ss_pred             CccccCCCcHHHHHHHHHhcCcceEEEEcCCCcEEEEeeHHHHHHHHHhcCCchhh------------hhHhhhcCCCCe
Q 019775          221 LPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRRTLKASGEGIFK------------LTVGEMCNRSPR  288 (336)
Q Consensus       221 ~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~it~~dl~~~~~~~~~~~~~------------~~i~~~~~~~~~  288 (336)
                      +++++++.++.++++.|.+++++.+||+|++|+++|+++..|++............            ....+.+.+++.
T Consensus         3 ~~~v~~~~~~~~a~~~~~~~~~~~i~V~d~~~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (126)
T cd04642           3 VVSIDSDERVLDAFKLMRKNNISGLPVVDEKGKLIGNISASDLKGLLLSPDDLLLYRTITFKELSEKFTDSDGVKSRPLI   82 (126)
T ss_pred             eEEECCCccHHHHHHHHHHhCCCcccEECCCCcEEEEEEHHHhhhhhcCcchhhcccchhhhhhhhhcccccccccCCCe
Confidence            45789999999999999988999999999889999999999999866432210000            112245667788


Q ss_pred             eeCCCccHHHHHHHhcCCCCCccEeEEEeCCCcEEEEEehhhHhh
Q 019775          289 TIGPDAMAVEAMQKMESPPSPVQFLPVINRQNILIGIVTLHGLVS  333 (336)
Q Consensus       289 ~v~~~~~l~~~~~~~~~~~~~~~~l~Vv~~~~~~iGiit~~di~~  333 (336)
                      .+.+++++.++++.|.++  +...+||++++|+++|+||+.||++
T Consensus        83 ~v~~~~~l~~a~~~~~~~--~~~~l~Vvd~~~~~~Giit~~dil~  125 (126)
T cd04642          83 TCTPSSTLKEVITKLVAN--KVHRVWVVDEEGKPIGVITLTDIIS  125 (126)
T ss_pred             EECCCCcHHHHHHHHHHh--CCcEEEEECCCCCEEEEEEHHHHhc
Confidence            999999999999999998  8999999998899999999999985

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04582 CBS_pair_ABC_OpuCA_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA

Probab=99.54  E-value=1.4e-13  Score=103.74  Aligned_cols=103  Identities=17%  Similarity=0.224  Sum_probs=91.5

Q ss_pred             CccccCCCcHHHHHHHHHhcCcceEEEEcCCCcEEEEeeHHHHHHHHHhcCCchhhhhHhhhcCCCCeeeCCCccHHHHH
Q 019775          221 LPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRRTLKASGEGIFKLTVGEMCNRSPRTIGPDAMAVEAM  300 (336)
Q Consensus       221 ~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~it~~dl~~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~l~~~~  300 (336)
                      +++++++.++.++.+.|.+.+...+||+|++|+++|+++..|++....        .++.++|.+.+..+.+++++.+++
T Consensus         3 ~~~v~~~~~~~~a~~~~~~~~~~~~~v~d~~g~~~Giv~~~dl~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~   74 (106)
T cd04582           3 PITVRPDDPLSDALGLMDDSDLRALTVVDADGQPLGFVTRREAARASG--------GCCGDHAEPFKVTVSVDDDLRIVL   74 (106)
T ss_pred             CcEecCCCcHHHHHHHHHhcCCCEEEEECCCCCEEEEEeHHHHHHhcc--------cchhhhcccCCEEECCCCCHHHHH
Confidence            458899999999999999888899999998899999999999986421        246778877778899999999999


Q ss_pred             HHhcCCCCCccEeEEEeCCCcEEEEEehhhHhh
Q 019775          301 QKMESPPSPVQFLPVINRQNILIGIVTLHGLVS  333 (336)
Q Consensus       301 ~~~~~~~~~~~~l~Vv~~~~~~iGiit~~di~~  333 (336)
                      +.|.++  +...+||++++|+++|+|+++++++
T Consensus        75 ~~~~~~--~~~~~~Vv~~~~~~~Gvi~~~~l~~  105 (106)
T cd04582          75 SRMFAH--DMSWLPCVDEDGRYVGEVTQRSIAD  105 (106)
T ss_pred             HHHHHC--CCCeeeEECCCCcEEEEEEHHHhhc
Confidence            999999  8999999998899999999999976

OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzi

>PRK08674 bifunctional phosphoglucose/phosphomannose isomerase; Validated

Probab=99.54  E-value=2e-13  Score=124.41  Aligned_cols=142  Identities=19%  Similarity=0.196  Sum_probs=105.1

Q ss_pred             HHHHHHHHHHHHhcCChhHHHHHHHHHHcCCCeEEEEeccchHHHHHHHHHHH-HhcCCeeeecCCccccccccCCCCCC
Q 019775           24 FKSQQDHLNYFFQHLSLPHTLTFTQTLLKCRGTIFFTGVGKSGFVANKISQTL-ISLGIKSGFLNPLDALHGDIGILSSD  102 (336)
Q Consensus        24 ~~~~~~~l~~~~~~~~~~~i~~~~~~i~~a~~~I~i~G~G~s~~~a~~~~~~l-~~~g~~~~~~~~~~~~~~~~~~~~~~  102 (336)
                      +....+.++...+.-.+..+.   .++.++ ++|+++|.|.|...|+++.+.+ ...++++....+...    ....+++
T Consensus         8 ~~~~~~q~~~a~~~~~~~~~~---~~~~~~-~~I~i~G~GgS~~~a~~~~~~l~~~~~~~~~~~~~~~~----~~~~~~~   79 (337)
T PRK08674          8 YLNWPEQFEEALEIAISLDLE---EDLEKI-DNIVISGMGGSGIGGDLLRILLFDELKVPVFVNRDYTL----PAFVDEK   79 (337)
T ss_pred             HHhHHHHHHHHHHhhhccchh---hhhcCC-CEEEEEECcHHHHHHHHHHHHHHhcCCCcEEEeCccch----hhcCCCC
Confidence            333444444444333322233   344578 6999999999999999999887 457888888765432    2345899


Q ss_pred             cEEEEEeCCCCcHHHHHHHHHHHHcCCeEEEEeCCCCCccccccCE----EEEcCCCcccCCCCCCChhHHHHHHHHHHH
Q 019775          103 DILVMFSKSGNTEELLKVVPCAKAKGAYLVSVTSVEGNALAAVCDM----NVHLPVERELCPFDLAPVTSTAIQMVFGDT  178 (336)
Q Consensus       103 dlvi~iS~sG~~~~~~~~~~~ak~~g~~vi~IT~~~~s~l~~~ad~----~i~~~~~~~~~~~~~~~~~s~~~~~~l~d~  178 (336)
                      |++|++|.||+|++++++++.|+++|+++|+||+  +++++++||.    ++.+|.+.          .++.+..++++.
T Consensus        80 dlvI~iS~SG~T~e~~~a~~~a~~~ga~vIaIT~--~~~L~~~a~~~~~~~i~ip~~~----------~~r~s~~~ll~~  147 (337)
T PRK08674         80 TLVIAVSYSGNTEETLSAVEQALKRGAKIIAITS--GGKLKEMAKEHGLPVIIVPGGY----------QPRAALGYLFTP  147 (337)
T ss_pred             cEEEEEcCCCCCHHHHHHHHHHHHCCCeEEEECC--CchHHHHHHhcCCeEEEeCCCC----------cchhhHHHHHHH
Confidence            9999999999999999999999999999999997  4689999887    78887542          245666777777


Q ss_pred             HHHHHHh
Q 019775          179 VAIAMMG  185 (336)
Q Consensus       179 l~~~~~~  185 (336)
                      ++..+..
T Consensus       148 l~~~l~~  154 (337)
T PRK08674        148 LLKILEK  154 (337)
T ss_pred             HHHHHHH
Confidence            7665543

>cd04586 CBS_pair_BON_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the BON (bacterial OsmY and nodulation domain) domain

Probab=99.54  E-value=6.9e-14  Score=110.42  Aligned_cols=111  Identities=23%  Similarity=0.342  Sum_probs=95.3

Q ss_pred             CccccCCCcHHHHHHHHHhcCcceEEEEcCCCcEEEEeeHHHHHHHHHhcCC---------------------chhhhhH
Q 019775          221 LPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRRTLKASGE---------------------GIFKLTV  279 (336)
Q Consensus       221 ~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~it~~dl~~~~~~~~~---------------------~~~~~~i  279 (336)
                      +++++++.++.++.+.|.++++..+||+|++++++|+++..++.........                     .....++
T Consensus         4 ~~~v~~~~~~~~~~~~~~~~~~~~~~Vvd~~~~~~Gvi~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v   83 (135)
T cd04586           4 VVTVSPETSVAEAARLMLDNHISGLPVVDDDGRLVGIVSEGDLLRRAELGTERRRARWLDLLAGAEELAAAFVRSHGRKV   83 (135)
T ss_pred             CEEeCCCCCHHHHHHHHHHcCCCCceEECCCCCEEEEeeHHHHHHHhcccCcchhhhHHHHhcchHHHHHHHHHhcCCCH
Confidence            5688999999999999999999999999988999999999999875432100                     0113568


Q ss_pred             hhhcCCCCeeeCCCccHHHHHHHhcCCCCCccEeEEEeCCCcEEEEEehhhHhhc
Q 019775          280 GEMCNRSPRTIGPDAMAVEAMQKMESPPSPVQFLPVINRQNILIGIVTLHGLVSA  334 (336)
Q Consensus       280 ~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~l~Vv~~~~~~iGiit~~di~~~  334 (336)
                      .++|.+++..+.+++++.++++.|.+.  +...+||+| +|+++|+||+.|++++
T Consensus        84 ~~~~~~~~~~v~~~~~~~~~~~~~~~~--~~~~l~Vvd-~g~~~Gvit~~di~~~  135 (135)
T cd04586          84 ADVMTRPVVTVGEDTPLAEVAELMEEH--RIKRVPVVR-GGRLVGIVSRADLLRA  135 (135)
T ss_pred             HHHhCCCceEeCCCCcHHHHHHHHHHc--CCCccCEec-CCEEEEEEEhHhhhcC
Confidence            889988899999999999999999999  899999999 6999999999999864

BON is a putative phospholipid-binding domain found in a family of osmotic shock protection proteins. It is also found in some secretins and a group of potential haemolysins. Its likely function is attachment to phospholipid membranes. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04588 CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the archaeal CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain

Probab=99.54  E-value=1.6e-13  Score=104.14  Aligned_cols=107  Identities=19%  Similarity=0.213  Sum_probs=94.0

Q ss_pred             CccccCCCcHHHHHHHHHhcCcceEEEEcCCCcEEEEeeHHHHHHHHHhcCCchhhhhHhhhcCCCCeeeCCCccHHHHH
Q 019775          221 LPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRRTLKASGEGIFKLTVGEMCNRSPRTIGPDAMAVEAM  300 (336)
Q Consensus       221 ~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~it~~dl~~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~l~~~~  300 (336)
                      +.+++++.++.++.+.|.+.+++.+||+++ ++++|+++.+++.........   ..++.+++.+++.++.++.++.+++
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~G~v~~~~l~~~~~~~~~---~~~v~~~~~~~~~~v~~~~~~~~~~   78 (110)
T cd04588           3 LITLNPNATLREAARLFNTHHIHGAPVVDD-GKLVGIVTLSDIAHAIARGLE---LAKVKDVMTKDVITIDEDEQLYDAI   78 (110)
T ss_pred             cEEECCCCCHHHHHHHHHHcCCCEEEEeeC-CEEEEEEEHHHHHHHHhcccc---ccCHHHHhcCCceEECCCCCHHHHH
Confidence            457899999999999999989999999997 999999999999986543211   2568888888889999999999999


Q ss_pred             HHhcCCCCCccEeEEEeCCCcEEEEEehhhHhh
Q 019775          301 QKMESPPSPVQFLPVINRQNILIGIVTLHGLVS  333 (336)
Q Consensus       301 ~~~~~~~~~~~~l~Vv~~~~~~iGiit~~di~~  333 (336)
                      +.|.+.  +...+||++++|+++|+|++.|+++
T Consensus        79 ~~~~~~--~~~~~~V~~~~~~~~G~i~~~dl~~  109 (110)
T cd04588          79 RLMNKH--NVGRLIVTDDEGRPVGIITRTDILR  109 (110)
T ss_pred             HHHHhc--CCCEEEEECCCCCEEEEEEhHHhhc
Confidence            999988  8899999998899999999999975

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site.

>cd04632 CBS_pair_19 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.53  E-value=1.3e-13  Score=107.67  Aligned_cols=112  Identities=21%  Similarity=0.278  Sum_probs=94.4

Q ss_pred             CccccCCCcHHHHHHHHHhcCcceEEEEcCCCcEEEEeeHHHHHHHHHhcC------------CchhhhhHhhhcCCCCe
Q 019775          221 LPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRRTLKASG------------EGIFKLTVGEMCNRSPR  288 (336)
Q Consensus       221 ~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~it~~dl~~~~~~~~------------~~~~~~~i~~~~~~~~~  288 (336)
                      +.++.+++++.++.+.|.+.+.+.+||+|++|+++|+++.+++...+....            ......++.++|.+++.
T Consensus         3 ~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~G~it~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (128)
T cd04632           3 VITVREDDSVGKAINVLREHGISRLPVVDDNGKLTGIVTRHDIVDFVVRDRDKARTGDRSGEKERMLDLPVYDAMSSPVI   82 (128)
T ss_pred             ceEeCCCCCHHHHHHHHHHcCCCEEEEECCCCcEEEEEEHHHHHHHHhhhhhhcchhhhhhhhhhhccCcHHHHhcCCCc
Confidence            457899999999999999999999999998899999999999987643210            00113468889988889


Q ss_pred             eeCCCccHHHHHHHhcCCCCCccEeEEEe--CCCcEEEEEehhhHhhc
Q 019775          289 TIGPDAMAVEAMQKMESPPSPVQFLPVIN--RQNILIGIVTLHGLVSA  334 (336)
Q Consensus       289 ~v~~~~~l~~~~~~~~~~~~~~~~l~Vv~--~~~~~iGiit~~di~~~  334 (336)
                      ++.++.++.++++.|.+.  +...+||++  ++|+++|+||++|++++
T Consensus        83 ~v~~~~~l~~~l~~~~~~--~~~~~~V~~~~~~~~~~Gvit~~di~~~  128 (128)
T cd04632          83 TASPNDSVRDAVDRMLEN--DDSSVVVVTPDDDTKVVGILTKKDVLRA  128 (128)
T ss_pred             eECCCCcHHHHHHHHHhC--CCCeEeEeccCCCCcEEEEEEhHhhhcC
Confidence            999999999999999998  788999984  46899999999999864

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>PRK07807 inosine 5-monophosphate dehydrogenase; Validated

Probab=99.53  E-value=6.6e-14  Score=131.64  Aligned_cols=116  Identities=23%  Similarity=0.329  Sum_probs=104.3

Q ss_pred             hhhhhhccccCCCCccccCCCcHHHHHHHHHhcCcceEEEEcCCCcEEEEeeHHHHHHHHHhcCCchhhhhHhhhcCCCC
Q 019775          208 IFKVQDVMKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRRTLKASGEGIFKLTVGEMCNRSP  287 (336)
Q Consensus       208 ~~~v~~im~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~it~~dl~~~~~~~~~~~~~~~i~~~~~~~~  287 (336)
                      .++++++|.+++  ++++++.+++++.+.|.+++++.+||+|++++++|+|+.+|+...    .   ...++.++|.+++
T Consensus        88 ~VKv~~iMi~~p--vtv~~d~tv~eA~~~m~~~~~s~l~VVD~~gklvGIVT~rDL~~~----~---~~~~V~diMt~~~  158 (479)
T PRK07807         88 WVKSRDLVFDTP--VTLSPDDTVGDALALLPKRAHGAVVVVDEEGRPVGVVTEADCAGV----D---RFTQVRDVMSTDL  158 (479)
T ss_pred             hcccccccccCC--eEECCCCCHHHHHHHHHhcCCceEEEECCCCeEEEEEeHHHHhcC----c---cCCCHHHhccCCc
Confidence            567789998874  499999999999999999999999999988999999999998532    1   1356999999999


Q ss_pred             eeeCCCccHHHHHHHhcCCCCCccEeEEEeCCCcEEEEEehhhHhhc
Q 019775          288 RTIGPDAMAVEAMQKMESPPSPVQFLPVINRQNILIGIVTLHGLVSA  334 (336)
Q Consensus       288 ~~v~~~~~l~~~~~~~~~~~~~~~~l~Vv~~~~~~iGiit~~di~~~  334 (336)
                      .++++++++.++++.|.++  +.+.+||+|++|+++|+||++||++.
T Consensus       159 itV~~d~sL~eAl~lM~~~--~i~~LPVVD~~g~lvGIIT~~DIl~~  203 (479)
T PRK07807        159 VTLPAGTDPREAFDLLEAA--RVKLAPVVDADGRLVGVLTRTGALRA  203 (479)
T ss_pred             eEECCCCcHHHHHHHHHhc--CCCEEEEEcCCCeEEEEEEHHHHHHH
Confidence            9999999999999999999  99999999988999999999999874

>COG4109 Predicted transcriptional regulator containing CBS domains [Transcription]

Probab=99.53  E-value=3e-14  Score=123.58  Aligned_cols=118  Identities=23%  Similarity=0.394  Sum_probs=108.7

Q ss_pred             hhhhhhccccCCCCccccCCCcHHHHHHHHHhcCcceEEEEcCCCcEEEEeeHHHHHHHHHhcCCchhhhhHhhhcCCCC
Q 019775          208 IFKVQDVMKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRRTLKASGEGIFKLTVGEMCNRSP  287 (336)
Q Consensus       208 ~~~v~~im~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~it~~dl~~~~~~~~~~~~~~~i~~~~~~~~  287 (336)
                      ...|+|+|.|.....++.+++++.+-.++..+.+++++||+|+..+++|+|+.+|+.....       ..++..+|.++|
T Consensus       187 I~~Vedi~~P~~~~~yL~~~d~v~d~~~l~~kt~~sRfPVvn~~~kvvGvVt~rDv~~~~~-------~t~ieKVMtknp  259 (432)
T COG4109         187 IITVEDIMTPLEDTSYLRETDTVEDWLDLVEKTGHSRFPVVNRSMKVVGVVTMRDVLDKKP-------STTIEKVMTKNP  259 (432)
T ss_pred             eeeHHHhccccccceeccccccHHHHHHHHHHcCCCccceecccceEEEEEEehhhhcCCC-------CccHHHHhccCC
Confidence            4589999998776778999999999999999999999999999999999999999886432       578999999999


Q ss_pred             eeeCCCccHHHHHHHhcCCCCCccEeEEEeCCCcEEEEEehhhHhhc
Q 019775          288 RTIGPDAMAVEAMQKMESPPSPVQFLPVINRQNILIGIVTLHGLVSA  334 (336)
Q Consensus       288 ~~v~~~~~l~~~~~~~~~~~~~~~~l~Vv~~~~~~iGiit~~di~~~  334 (336)
                      .++.+.+++..+.++|.=.  +.+-+||++++.+++|+||++|+++.
T Consensus       260 ~tv~~~tsVAsvaq~MiwE--~iem~PVv~~n~~llGiitR~dvlk~  304 (432)
T COG4109         260 ITVRAKTSVASVAQMMIWE--GIEMLPVVDSNNTLLGIITRQDVLKS  304 (432)
T ss_pred             eeecccchHHHHHHHHHhc--cceeeeEEcCCceEEEEEEHHHHHHH
Confidence            9999999999999999888  89999999999999999999999874

>cd04636 CBS_pair_23 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.53  E-value=1.3e-13  Score=108.30  Aligned_cols=111  Identities=21%  Similarity=0.344  Sum_probs=95.2

Q ss_pred             CccccCCCcHHHHHHHHHhcCcceEEEEcCCCcEEEEeeHHHHHHHHHhcCCchh-------------------hhhHhh
Q 019775          221 LPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRRTLKASGEGIF-------------------KLTVGE  281 (336)
Q Consensus       221 ~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~it~~dl~~~~~~~~~~~~-------------------~~~i~~  281 (336)
                      +++++++.++.++.+.+.+.+++.+||+|++|+++|+++..+|...+........                   ..++.+
T Consensus         3 ~~~v~~~~~l~~~~~~~~~~~~~~~~V~d~~~~~~G~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~   82 (132)
T cd04636           3 VITVKKDDTLRDVVEILLTGKISGVPVVDNEGRVVGIVSEGDLIRKIYKGKGLFYVTLLYSVIFLDESKIKKLLGKKVEE   82 (132)
T ss_pred             CeEeCCCCcHHHHHHHHHHhCCCccceECCCCCEEEEEeHHHHHHHHhccCCcccccccccccccchHHHHHHcCCCHHH
Confidence            4578999999999999998889999999988999999999999987654221000                   127888


Q ss_pred             hcCCCCeeeCCCccHHHHHHHhcCCCCCccEeEEEeCCCcEEEEEehhhHhhc
Q 019775          282 MCNRSPRTIGPDAMAVEAMQKMESPPSPVQFLPVINRQNILIGIVTLHGLVSA  334 (336)
Q Consensus       282 ~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~l~Vv~~~~~~iGiit~~di~~~  334 (336)
                      +|.+++..+.+++++.++++.|.+.  +...+||+++ |+++|++|+.|+++.
T Consensus        83 ~~~~~~~~v~~~~~l~~~~~~~~~~--~~~~~~V~~~-~~~iGvit~~dl~~~  132 (132)
T cd04636          83 IMTKKVITVDEDTTIEDVARIMSKK--NIKRLPVVDD-GKLVGIISRGDIIRS  132 (132)
T ss_pred             hccCCceEECCCCcHHHHHHHHHHC--CCCeeEEEEC-CEEEEEEEHHHhhcC
Confidence            8888889999999999999999988  8899999999 999999999999863

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04800 CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain

Probab=99.52  E-value=2e-13  Score=103.76  Aligned_cols=108  Identities=31%  Similarity=0.448  Sum_probs=94.3

Q ss_pred             CccccCCCcHHHHHHHHHhcCcceEEEEcCCCcEEEEeeHHHHHHHHHhcCCchhhhhHhhhcCCCCeeeCCCccHHHHH
Q 019775          221 LPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRRTLKASGEGIFKLTVGEMCNRSPRTIGPDAMAVEAM  300 (336)
Q Consensus       221 ~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~it~~dl~~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~l~~~~  300 (336)
                      +++++++.+++++.+.|.+.+++.+||+|+ ++++|+++..++...+..... ....++.++|..++..+.+++++.+++
T Consensus         3 ~~~v~~~~~~~~~~~~~~~~~~~~i~V~~~-~~~~G~v~~~~l~~~~~~~~~-~~~~~i~~~~~~~~~~v~~~~~l~~~~   80 (111)
T cd04800           3 PVTCSPDTTIREAARLMTEHRVSSLLVVDD-GRLVGIVTDRDLRNRVVAEGL-DPDTPVSEVMTAPPITIPPDATVFEAL   80 (111)
T ss_pred             CEEECCCCcHHHHHHHHHHcCCCeEEEEEC-CEEEEEEEhHHHHHHHhccCC-CccCCHHHHhCCCCeEECCCCcHHHHH
Confidence            457899999999999999888899999996 999999999999876544221 123568889988899999999999999


Q ss_pred             HHhcCCCCCccEeEEEeCCCcEEEEEehhhHhh
Q 019775          301 QKMESPPSPVQFLPVINRQNILIGIVTLHGLVS  333 (336)
Q Consensus       301 ~~~~~~~~~~~~l~Vv~~~~~~iGiit~~di~~  333 (336)
                      +.|.+.  +...+||+++ |+++|++++.|+++
T Consensus        81 ~~~~~~--~~~~~~Vv~~-~~~~Giit~~di~~  110 (111)
T cd04800          81 LLMLER--GIHHLPVVDD-GRLVGVISATDLLR  110 (111)
T ss_pred             HHHHHc--CCCeeeEeEC-CEEEEEEEHHHhhc
Confidence            999999  8999999998 99999999999985

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pa

>TIGR03520 GldE gliding motility-associated protein GldE

Probab=99.52  E-value=8.2e-14  Score=129.57  Aligned_cols=119  Identities=13%  Similarity=0.206  Sum_probs=104.5

Q ss_pred             hhhhhhccccCCCCccccCCCcHHHHHHHHHhcCcceEEEEcCC-CcEEEEeeHHHHHHHHHhcCCchhhhhHhhhcCCC
Q 019775          208 IFKVQDVMKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEE-YHLIGTFTDGDLRRTLKASGEGIFKLTVGEMCNRS  286 (336)
Q Consensus       208 ~~~v~~im~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~-~~~~G~it~~dl~~~~~~~~~~~~~~~i~~~~~~~  286 (336)
                      .++|+++|.|...+.+++.+++++++.+.+.+++++++||++++ ++++|+++.+|++..... .    ..++.+++. +
T Consensus       190 ~~~v~diMtpr~~v~~l~~~~~~~e~~~~~~~~~~sR~PV~~~~~d~ivGiv~~kDll~~~~~-~----~~~l~~~~~-~  263 (408)
T TIGR03520       190 NTDTKQVMRPRLDIFALDIETSFSEIIPKIIENGYSRIPVYKETIDNITGVLYIKDLLPHLNK-K----NFDWQSLLR-E  263 (408)
T ss_pred             CCEeeeeCCchHhEEEEECCCCHHHHHHHHHhCCCCEEEEEcCCCCceEEEEEHHHHHhHhcc-C----CCCHHHHcC-C
Confidence            45889999997778899999999999999999999999999854 589999999999865432 1    235677775 5


Q ss_pred             CeeeCCCccHHHHHHHhcCCCCCccEeEEEeCCCcEEEEEehhhHhhc
Q 019775          287 PRTIGPDAMAVEAMQKMESPPSPVQFLPVINRQNILIGIVTLHGLVSA  334 (336)
Q Consensus       287 ~~~v~~~~~l~~~~~~~~~~~~~~~~l~Vv~~~~~~iGiit~~di~~~  334 (336)
                      +.+|++++++.++++.|+++  +.+..+|+|+.|...|+||..||++.
T Consensus       264 ~~~Vpe~~~l~~ll~~m~~~--~~~~aiVvDE~G~~~GiVT~eDilee  309 (408)
T TIGR03520       264 PYFVPENKKLDDLLRDFQEK--KNHLAIVVDEYGGTSGLVTLEDIIEE  309 (408)
T ss_pred             CeEeCCCCcHHHHHHHHHhc--CceEEEEEcCCCCEEEEEEHHHHHHH
Confidence            78999999999999999999  89999999999999999999999874

Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldC is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. GldE was discovered because of its adjacency to GldD in F. johnsonii. Overexpression of GldE partially supresses the effects of a GldB point mutant suggesting that GldB and GldE interact. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Not all Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility and in fact some do not appear to express the gliding phenotype.

>cd04795 SIS SIS domain

Probab=99.52  E-value=6.2e-14  Score=101.87  Aligned_cols=79  Identities=34%  Similarity=0.534  Sum_probs=73.3

Q ss_pred             EEEEeccchHHHHHHHHHHHHhc-CCeeeecCCccccccc-cCCCCCCcEEEEEeCCCCcHHHHHHHHHHHHcCCeEEEE
Q 019775           57 IFFTGVGKSGFVANKISQTLISL-GIKSGFLNPLDALHGD-IGILSSDDILVMFSKSGNTEELLKVVPCAKAKGAYLVSV  134 (336)
Q Consensus        57 I~i~G~G~s~~~a~~~~~~l~~~-g~~~~~~~~~~~~~~~-~~~~~~~dlvi~iS~sG~~~~~~~~~~~ak~~g~~vi~I  134 (336)
                      ||++|.|.|+.+|+++.++|.+. |+++....+....... ...++++|++|++|++|+++++.++++.+|++|+++|+|
T Consensus         1 i~i~g~G~s~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iS~sg~t~~~~~~~~~a~~~g~~ii~i   80 (87)
T cd04795           1 IFVIGIGGSGAIAAYFALELLELTGIEVVALIATELEHASLLSLLRKGDVVIALSYSGRTEELLAALEIAKELGIPVIAI   80 (87)
T ss_pred             CEEEEcCHHHHHHHHHHHHHhcccCCceEEeCCcHHHHHHHHhcCCCCCEEEEEECCCCCHHHHHHHHHHHHcCCeEEEE
Confidence            68999999999999999999999 9999988876665555 677899999999999999999999999999999999999


Q ss_pred             e
Q 019775          135 T  135 (336)
Q Consensus       135 T  135 (336)
                      |
T Consensus        81 t   81 (87)
T cd04795          81 T   81 (87)
T ss_pred             e
Confidence            9

SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.

>cd04635 CBS_pair_22 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.52  E-value=1.3e-13  Score=106.70  Aligned_cols=112  Identities=24%  Similarity=0.321  Sum_probs=95.2

Q ss_pred             CccccCCCcHHHHHHHHHhcCcceEEEEcCCCcEEEEeeHHHHHHHHHhcC---Cc-----hhhhhHhhhcCCCCeeeCC
Q 019775          221 LPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRRTLKASG---EG-----IFKLTVGEMCNRSPRTIGP  292 (336)
Q Consensus       221 ~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~it~~dl~~~~~~~~---~~-----~~~~~i~~~~~~~~~~v~~  292 (336)
                      +++++++.++.++.+.|.+.+++.+||+|++|+++|+++..+++.......   ..     ....++.++|.+++..+.+
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~   82 (122)
T cd04635           3 PVTCTPDDPVSKVWDLMLESGFTGLPVVQKAGELIGIITRRDIIRAGSVRTSVEDQQRTQTKASPTVEKIMSTPVYSVTP   82 (122)
T ss_pred             CEEeCCCCcHHHHHHHHHHcCCCcccEECCCCcEEEEEEcHHHHhhccccccccchhhhhhhccCcHHHHhcCCCeeECC
Confidence            457899999999999999889999999998899999999999986431110   00     1235678888888899999


Q ss_pred             CccHHHHHHHhcCCCCCccEeEEEeCCCcEEEEEehhhHhhc
Q 019775          293 DAMAVEAMQKMESPPSPVQFLPVINRQNILIGIVTLHGLVSA  334 (336)
Q Consensus       293 ~~~l~~~~~~~~~~~~~~~~l~Vv~~~~~~iGiit~~di~~~  334 (336)
                      ++++.++++.|.++  +...+||++++|+++|++|+.|++++
T Consensus        83 ~~~l~~~~~~~~~~--~~~~~~Vvd~~g~~~Gvit~~dl~~~  122 (122)
T cd04635          83 DDSIATAVELMLEH--DIGRLPVVNEKDQLVGIVDRHDVLKA  122 (122)
T ss_pred             CCCHHHHHHHHHHc--CCCeeeEEcCCCcEEEEEEhHHhhcC
Confidence            99999999999998  89999999988999999999999864

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04640 CBS_pair_27 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.52  E-value=1.6e-13  Score=107.05  Aligned_cols=111  Identities=21%  Similarity=0.275  Sum_probs=90.2

Q ss_pred             CccccCCCcHHHHHHHHHhcCcceEEEEcCCCcEEEEeeHHHHHHH-----HHhcCCchhhhhHhhhcCCCCeee-----
Q 019775          221 LPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRRT-----LKASGEGIFKLTVGEMCNRSPRTI-----  290 (336)
Q Consensus       221 ~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~it~~dl~~~-----~~~~~~~~~~~~i~~~~~~~~~~v-----  290 (336)
                      ++++++++++.++++.|.+++...+||+|++|+++|+++..|++..     ...........++.++|.+++..+     
T Consensus         3 ~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~~~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~~~~~   82 (126)
T cd04640           3 PIVIPADTSIDEALELMIKHGVRLLLVVDSDDNFIGVITAVDLLGEEPIKRIQEGGISRSELTVADVMTPKEDLKALDLE   82 (126)
T ss_pred             CeEECCCCcHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEHHHHhhChhhHHHHHcCCCchheEHHHhcCchhhhccccHH
Confidence            3578999999999999998898999999988999999999999862     222101112456889997655333     


Q ss_pred             -CCCccHHHHHHHhcCCCCCccEeEEEeCC-CcEEEEEehhhHhh
Q 019775          291 -GPDAMAVEAMQKMESPPSPVQFLPVINRQ-NILIGIVTLHGLVS  333 (336)
Q Consensus       291 -~~~~~l~~~~~~~~~~~~~~~~l~Vv~~~-~~~iGiit~~di~~  333 (336)
                       .+++++.++++.|.++  +.+.+||+|++ |+++|+||+.||++
T Consensus        83 ~~~~~~l~~~l~~m~~~--~~~~lpVvd~~~~~~~G~it~~di~~  125 (126)
T cd04640          83 ELENASVGDVVETLKAS--GRQHALVVDREHHQIRGIISTSDIAR  125 (126)
T ss_pred             HhccCcHHHHHHHHHHC--CCceEEEEECCCCEEEEEEeHHHHhh
Confidence             3688999999999999  89999999986 79999999999975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04620 CBS_pair_7 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.52  E-value=2.1e-13  Score=104.38  Aligned_cols=110  Identities=23%  Similarity=0.420  Sum_probs=91.6

Q ss_pred             CccccCCCcHHHHHHHHHhcC-cceEEEEcCCCcEEEEeeHHHHHHHHHhcCCchhhhhHhhhcCCCCeeeCCC--ccHH
Q 019775          221 LPVCKEGDLIMDQLVELTSKG-CGCLLVIDEEYHLIGTFTDGDLRRTLKASGEGIFKLTVGEMCNRSPRTIGPD--AMAV  297 (336)
Q Consensus       221 ~~~~~~~~~v~~~~~~~~~~~-~~~ipVvd~~~~~~G~it~~dl~~~~~~~~~~~~~~~i~~~~~~~~~~v~~~--~~l~  297 (336)
                      .++++++.++.++.+.|.+.+ ...+||++ +|+++|+++..|+........ .....++.++|.+++..+.++  +++.
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~~~G~v~~~dl~~~~~~~~-~~~~~~i~~~~~~~~~~v~~~~~~~l~   80 (115)
T cd04620           3 PLTVTPDTPVADAIALMSQQGDSSCVLVVE-KGRLLGIFTERDIVRLTAIGK-DLSDLPIGEVMTQPVVTLQESEIQDIF   80 (115)
T ss_pred             CeEeCCCCcHHHHHHHHHhcCCCceEEEcC-CCcEEEEEeHHHHHHHHhcCC-CccccCHHHhcCCCcEEEecccccCHH
Confidence            347899999999999998877 66778877 589999999999997654321 112357888888888888877  6899


Q ss_pred             HHHHHhcCCCCCccEeEEEeCCCcEEEEEehhhHhhc
Q 019775          298 EAMQKMESPPSPVQFLPVINRQNILIGIVTLHGLVSA  334 (336)
Q Consensus       298 ~~~~~~~~~~~~~~~l~Vv~~~~~~iGiit~~di~~~  334 (336)
                      ++++.|.++  +...+||+|++|+++|+||++|++++
T Consensus        81 ~a~~~~~~~--~~~~~pVvd~~~~~~Gvit~~dl~~~  115 (115)
T cd04620          81 TALSLFRQH--QIRHLPVLDDQGQLIGLVTAESIRQV  115 (115)
T ss_pred             HHHHHHHHh--CCceEEEEcCCCCEEEEEEhHHhhcC
Confidence            999999999  89999999988999999999999874

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04585 CBS_pair_ACT_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria

Probab=99.51  E-value=1.9e-13  Score=105.50  Aligned_cols=111  Identities=29%  Similarity=0.397  Sum_probs=95.5

Q ss_pred             CccccCCCcHHHHHHHHHhcCcceEEEEcCCCcEEEEeeHHHHHHHHHhcCCc---------hhhhhHhhhcCCCCeeeC
Q 019775          221 LPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRRTLKASGEG---------IFKLTVGEMCNRSPRTIG  291 (336)
Q Consensus       221 ~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~it~~dl~~~~~~~~~~---------~~~~~i~~~~~~~~~~v~  291 (336)
                      +++++++.++.++.+.|.+.++..+||+|+ |+++|+++..++..........         ....++.++|.+++.++.
T Consensus         3 ~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~-~~~~G~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~   81 (122)
T cd04585           3 PITVTPDTSLMEALKLMKENSIRRLPVVDR-GKLVGIVTDRDLKLASPSKATTLDIWELYYLLSKIKVSDIMTRDPITVS   81 (122)
T ss_pred             CEEeCCCCcHHHHHHHHHhCCcceeeEecC-CeEEEEEeHHHHHHhhhcccccccchhhhhhhcccCHHHhccCCCeEeC
Confidence            457899999999999999989999999997 8999999999999876432110         013568888888899999


Q ss_pred             CCccHHHHHHHhcCCCCCccEeEEEeCCCcEEEEEehhhHhhc
Q 019775          292 PDAMAVEAMQKMESPPSPVQFLPVINRQNILIGIVTLHGLVSA  334 (336)
Q Consensus       292 ~~~~l~~~~~~~~~~~~~~~~l~Vv~~~~~~iGiit~~di~~~  334 (336)
                      +++++.++++.|.+.  +...+||++++|+++|+||+.|+++.
T Consensus        82 ~~~~l~~~~~~~~~~--~~~~~~Vv~~~~~~~Gvvt~~di~~~  122 (122)
T cd04585          82 PDASVEEAAELMLER--KISGLPVVDDQGRLVGIITESDLFRA  122 (122)
T ss_pred             CCCcHHHHHHHHHHc--CCCceeEECCCCcEEEEEEHHHhhhC
Confidence            999999999999998  89999999988999999999999863

Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The i

>cd04612 CBS_pair_SpoIVFB_EriC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC

Probab=99.51  E-value=2.8e-13  Score=102.81  Aligned_cols=108  Identities=25%  Similarity=0.375  Sum_probs=93.8

Q ss_pred             CccccCCCcHHHHHHHHHhcCcceEEEEcCCCcEEEEeeHHHHHHHHHhcCCchhhhhHhhhcCCCCeeeCCCccHHHHH
Q 019775          221 LPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRRTLKASGEGIFKLTVGEMCNRSPRTIGPDAMAVEAM  300 (336)
Q Consensus       221 ~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~it~~dl~~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~l~~~~  300 (336)
                      ++.++++.++.++.+.|.+.+.+.+||+|+ ++++|+++.+|+.........  ...++.++|.+++..+.+++++.+++
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~G~v~~~dl~~~~~~~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~   79 (111)
T cd04612           3 VVTVPVDLTVDEVLALMFGERHRGYPVVDD-GRLVGIVTLADIRRVPAEGRE--ATVLVGDVMTRDPVTASPDETLRDAL   79 (111)
T ss_pred             CEEeCCCCcHHHHHHHHHHcCCCcceEeeC-CeEEEEEEHHHHHHHHhcCcc--cccCHHHhccCCCeEECCCCCHHHHH
Confidence            457899999999999999888899999997 999999999999876543211  11357788888899999999999999


Q ss_pred             HHhcCCCCCccEeEEEeCCCcEEEEEehhhHhh
Q 019775          301 QKMESPPSPVQFLPVINRQNILIGIVTLHGLVS  333 (336)
Q Consensus       301 ~~~~~~~~~~~~l~Vv~~~~~~iGiit~~di~~  333 (336)
                      +.|.++  +.+.+||++++|+++|+|+..|+++
T Consensus        80 ~~~~~~--~~~~~~V~~~~~~~~G~it~~di~~  110 (111)
T cd04612          80 KRMAER--DIGRLPVVDDSGRLVGIVSRSDLLR  110 (111)
T ss_pred             HHHHhC--CCCeeeEEcCCCCEEEEEEHHHhhh
Confidence            999998  8899999988899999999999976

SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase an

>cd04589 CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the bacterial CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain

Probab=99.51  E-value=2.8e-13  Score=102.94  Aligned_cols=109  Identities=22%  Similarity=0.245  Sum_probs=94.2

Q ss_pred             CccccCCCcHHHHHHHHHhcCcceEEEEcCCCcEEEEeeHHHHHHHHHhcCCchhhhhHhhhcCCCCeeeCCCccHHHHH
Q 019775          221 LPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRRTLKASGEGIFKLTVGEMCNRSPRTIGPDAMAVEAM  300 (336)
Q Consensus       221 ~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~it~~dl~~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~l~~~~  300 (336)
                      .+.++++.+++++.+.|.+.+...+||+|+ |+++|+++.++++....... .....++.++|.+++..+++++++.+++
T Consensus         3 ~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~-~~~~G~v~~~~l~~~~~~~~-~~~~~~i~~~~~~~~~~v~~~~~l~~~~   80 (111)
T cd04589           3 PLIVDASTSIRDAARLMREHGADALLVRDG-DPRLGIVTRTDLLDAVLLDG-LPSSTPVGEIATFPLITVDPDDFLFNAL   80 (111)
T ss_pred             CEEECCCCcHHHHHHHHHHcCCCEEEEecC-CeEEEEEEHHHHHHHHHcCC-CCCCCCHHHHhCCCcEEECCCCcHHHHH
Confidence            347899999999999999888899999997 89999999999997664322 1124578889988889999999999999


Q ss_pred             HHhcCCCCCccEeEEEeCCCcEEEEEehhhHhhc
Q 019775          301 QKMESPPSPVQFLPVINRQNILIGIVTLHGLVSA  334 (336)
Q Consensus       301 ~~~~~~~~~~~~l~Vv~~~~~~iGiit~~di~~~  334 (336)
                      +.|.++  +...+||+++ |+++|+||..|++++
T Consensus        81 ~~~~~~--~~~~~~Vv~~-~~~~G~it~~dl~~~  111 (111)
T cd04589          81 LLMTRH--RIHRVVVREG-GEVVGVLEQTDLLSF  111 (111)
T ss_pred             HHHHHh--CccEEEEeeC-CEEEEEEEhHHhhcC
Confidence            999999  8999999987 999999999999863

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or

>PF13580 SIS_2: SIS domain; PDB: 1TK9_C 2I22_B 2I2W_A 1X92_A 3BJZ_D 2XBL_B 2X3Y_F 2YVA_B 3CVJ_D 3TRJ_D

Probab=99.51  E-value=1.8e-13  Score=108.23  Aligned_cols=98  Identities=21%  Similarity=0.277  Sum_probs=69.4

Q ss_pred             ChhHHHHHHHHHHcC---CCeEEEEeccchHHHHHHHHHHHHhc------CCeeeecCCcc---------------cccc
Q 019775           39 SLPHTLTFTQTLLKC---RGTIFFTGVGKSGFVANKISQTLISL------GIKSGFLNPLD---------------ALHG   94 (336)
Q Consensus        39 ~~~~i~~~~~~i~~a---~~~I~i~G~G~s~~~a~~~~~~l~~~------g~~~~~~~~~~---------------~~~~   94 (336)
                      ..+.|+++++.+.++   +++||++|.|.|...|.+++.++...      ..+...+.+..               ....
T Consensus        17 ~~~~i~~aa~~i~~~~~~gg~i~~~G~G~S~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~   96 (138)
T PF13580_consen   17 QAEAIEKAADLIAEALRNGGRIFVCGNGHSAAIASHFAADLGGLFGVNRILLPAIALNDDALTAISNDLEYDEGFARQLL   96 (138)
T ss_dssp             SHHHHHHHHHHHHHHHHTT--EEEEESTHHHHHHHHHHHHHHCHSSSTSSS-SEEETTSTHHHHHHHHTTGGGTHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHCCCEEEEEcCchhhhHHHHHHHHHhcCcCCCcccccccccccchHhhhhcccchhhHHHHHHH
Confidence            557777777776433   37999999999999999999999865      33444444321               0011


Q ss_pred             ccCCCCCCcEEEEEeCCCCcHHHHHHHHHHHHcCCeEEEEeC
Q 019775           95 DIGILSSDDILVMFSKSGNTEELLKVVPCAKAKGAYLVSVTS  136 (336)
Q Consensus        95 ~~~~~~~~dlvi~iS~sG~~~~~~~~~~~ak~~g~~vi~IT~  136 (336)
                      ....+.++|++|+||.||+++.++++++.||++|++||+||+
T Consensus        97 ~~~~~~~gDvli~iS~SG~s~~vi~a~~~Ak~~G~~vIalTg  138 (138)
T PF13580_consen   97 ALYDIRPGDVLIVISNSGNSPNVIEAAEEAKERGMKVIALTG  138 (138)
T ss_dssp             HHTT--TT-EEEEEESSS-SHHHHHHHHHHHHTT-EEEEEEE
T ss_pred             HHcCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEEeC
Confidence            112389999999999999999999999999999999999995

...

>cd04602 CBS_pair_IMPDH_2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein

Probab=99.50  E-value=2.2e-13  Score=104.21  Aligned_cols=105  Identities=19%  Similarity=0.210  Sum_probs=90.8

Q ss_pred             CccccCCCcHHHHHHHHHhcCcceEEEEcC---CCcEEEEeeHHHHHHHHHhcCCchhhhhHhhhcCCCCeeeCC--Ccc
Q 019775          221 LPVCKEGDLIMDQLVELTSKGCGCLLVIDE---EYHLIGTFTDGDLRRTLKASGEGIFKLTVGEMCNRSPRTIGP--DAM  295 (336)
Q Consensus       221 ~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~---~~~~~G~it~~dl~~~~~~~~~~~~~~~i~~~~~~~~~~v~~--~~~  295 (336)
                      .+++.++.++.++.+.|.+.+...+||+|+   +|+++|+++.++++....  .    ..++.++|.+.+..+..  +++
T Consensus         4 ~~~i~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~~~~G~v~~~dl~~~~~--~----~~~v~~~~~~~~~~~~~~~~~~   77 (114)
T cd04602           4 PSVLSPDHTVADVLEIKEKKGFSGIPVTEDGKSGGKLLGIVTSRDIDFLTD--S----ETPLSEVMTPREVLVVAPTGIT   77 (114)
T ss_pred             CeEcCCCCCHHHHHHHHHHcCCCceEEeeCCCcCCEEEEEEEhHHhhhhhc--c----CCCHHHhcCCCceEEECCCCCC
Confidence            357899999999999999888899999997   689999999999875321  1    34688899887777766  999


Q ss_pred             HHHHHHHhcCCCCCccEeEEEeCCCcEEEEEehhhHhh
Q 019775          296 AVEAMQKMESPPSPVQFLPVINRQNILIGIVTLHGLVS  333 (336)
Q Consensus       296 l~~~~~~~~~~~~~~~~l~Vv~~~~~~iGiit~~di~~  333 (336)
                      +.++++.|.++  +...+||++++|+++|+||+.|+++
T Consensus        78 l~~~l~~~~~~--~~~~~pVv~~~~~~~Gvit~~di~~  113 (114)
T cd04602          78 LEEANEILRES--KKGKLPIVNDDGELVALVTRSDLKK  113 (114)
T ss_pred             HHHHHHHHHhc--CCCceeEECCCCeEEEEEEHHHhhc
Confidence            99999999999  8999999998899999999999976

IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentos

>cd04606 CBS_pair_Mg_transporter This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain in the magnesium transporter, MgtE

Probab=99.50  E-value=2.1e-13  Score=103.36  Aligned_cols=103  Identities=21%  Similarity=0.304  Sum_probs=89.5

Q ss_pred             cccCCCcHHHHHHHHHhcC-----cceEEEEcCCCcEEEEeeHHHHHHHHHhcCCchhhhhHhhhcCCCCeeeCCCccHH
Q 019775          223 VCKEGDLIMDQLVELTSKG-----CGCLLVIDEEYHLIGTFTDGDLRRTLKASGEGIFKLTVGEMCNRSPRTIGPDAMAV  297 (336)
Q Consensus       223 ~~~~~~~v~~~~~~~~~~~-----~~~ipVvd~~~~~~G~it~~dl~~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~l~  297 (336)
                      +++++.++.++++.|.+++     +..+||+|++|+++|+++.+++...    .   ...++.+++.+++..+.+++++.
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvd~~~~~~G~v~~~~l~~~----~---~~~~v~~~~~~~~~~i~~~~~~~   73 (109)
T cd04606           1 AVREDWTVGEALEYLRRNADDPETIYYIYVVDEEGRLLGVVSLRDLLLA----D---PDTPVSDIMDTDVISVSADDDQE   73 (109)
T ss_pred             CccccCcHHHHHHHHHhccCcccceeEEEEECCCCCEEEEEEHHHHhcC----C---CcchHHHHhCCCCeEEcCCCCHH
Confidence            3578899999999998776     4689999988999999999998752    1   14568888888888999999999


Q ss_pred             HHHHHhcCCCCCccEeEEEeCCCcEEEEEehhhHhhc
Q 019775          298 EAMQKMESPPSPVQFLPVINRQNILIGIVTLHGLVSA  334 (336)
Q Consensus       298 ~~~~~~~~~~~~~~~l~Vv~~~~~~iGiit~~di~~~  334 (336)
                      ++++.|.++  +.+.+||++++|+++|+|++.|++++
T Consensus        74 ~~~~~~~~~--~~~~~~Vv~~~~~~~Gvit~~dll~~  108 (109)
T cd04606          74 EVARLFEKY--DLLALPVVDEEGRLVGIITVDDVIDV  108 (109)
T ss_pred             HHHHHHHHc--CCceeeeECCCCcEEEEEEhHHhhhh
Confidence            999999998  88999999988999999999999875

MgtE and its homologs are found in eubacteria, archaebacteria, and eukaryota. Members of this family transport Mg2+ or other divalent cations into the cell via two highly conserved aspartates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]

Probab=99.50  E-value=2.5e-13  Score=124.95  Aligned_cols=126  Identities=23%  Similarity=0.308  Sum_probs=113.8

Q ss_pred             hhhhhhhhhhccccCCCCccccCCCcHHHHHHHHHhcCcceEEEEcCCCcEEEEeeHHHHHHHHHhcCCchhhhhHhhhc
Q 019775          204 GKSLIFKVQDVMKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRRTLKASGEGIFKLTVGEMC  283 (336)
Q Consensus       204 ~~~~~~~v~~im~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~it~~dl~~~~~~~~~~~~~~~i~~~~  283 (336)
                      .+..+..+.+++..+..  ++++..++++|..+|.+++.+.+.++++++...||||++|+...+...+. ....+++++|
T Consensus       144 ~e~~~trv~~~~~~~~~--~v~~~~~i~~aa~km~~~gv~s~v~l~~~~~~~GIvT~~dl~~~v~~~g~-~~~~~V~evm  220 (610)
T COG2905         144 SEFILTRVGEVKTLPAV--TVSPQASIQDAARKMKDEGVSSLVVLDDSGPLLGIVTRKDLRSRVIADGR-SKTQKVSEVM  220 (610)
T ss_pred             chHHHHHHHHHhcCCCc--ccCccCcHHHHHHHHHhcCCCeEEEEcCCCCccceeehHHHHHHHHhcCC-Ccccchhhhh
Confidence            34456688899888754  89999999999999999999999999999999999999999999987443 3578999999


Q ss_pred             CCCCeeeCCCccHHHHHHHhcCCCCCccEeEEEeCCCcEEEEEehhhHhhcC
Q 019775          284 NRSPRTIGPDAMAVEAMQKMESPPSPVQFLPVINRQNILIGIVTLHGLVSAG  335 (336)
Q Consensus       284 ~~~~~~v~~~~~l~~~~~~~~~~~~~~~~l~Vv~~~~~~iGiit~~di~~~~  335 (336)
                      +.++..|..++-+.+|+-+|.++  +++++||+++ |+++|+||..||++..
T Consensus       221 T~p~~svd~~~~~feAml~m~r~--~I~hl~V~e~-gq~~Gilt~~dIl~l~  269 (610)
T COG2905         221 TSPVISVDRGDFLFEAMLMMLRN--RIKHLPVTED-GQPLGILTLTDILRLF  269 (610)
T ss_pred             ccCceeecCcchHHHHHHHHHHh--CCceeeeecC-CeeeEEeeHHHHHHhh
Confidence            99999999999999999999999  9999999988 9999999999999864

>COG4821 Uncharacterized protein containing SIS (Sugar ISomerase) phosphosugar binding domain [General function prediction only]

Probab=99.49  E-value=1.9e-12  Score=103.88  Aligned_cols=162  Identities=17%  Similarity=0.219  Sum_probs=105.9

Q ss_pred             hHHHHHHHH----HHcCCCeEEEEeccchHHHHHHHHHHHHhcCCee-eecCC------------------ccccccccC
Q 019775           41 PHTLTFTQT----LLKCRGTIFFTGVGKSGFVANKISQTLISLGIKS-GFLNP------------------LDALHGDIG   97 (336)
Q Consensus        41 ~~i~~~~~~----i~~a~~~I~i~G~G~s~~~a~~~~~~l~~~g~~~-~~~~~------------------~~~~~~~~~   97 (336)
                      +.+++++++    +.+- ++||+||+|.|+.+|++.+++-..+-... ++..+                  ...+.....
T Consensus        22 ~~i~kaa~lVAesi~n~-g~i~~FG~GHShm~aeEv~yRAGGLa~~~pIL~~plMLhega~ass~lErieg~~~~~l~~~  100 (243)
T COG4821          22 ENIKKAAKLVAESIMND-GRIYVFGSGHSHMLAEEVFYRAGGLAPIKPILMEPLMLHEGAVASSYLERIEGYAKLFLHRL  100 (243)
T ss_pred             HHHHHHHHHHHHHHhcC-CEEEEecCchHHHHHHHHHhhcCCccccccccCChhhhcccccccchhHhhhhHHHHHHHHh
Confidence            444555444    4455 69999999999999999999866552222 22211                  111111122


Q ss_pred             CCCCCcEEEEEeCCCCcHHHHHHHHHHHHcCCeEEEEeCCCCC-----------ccccccCEEEEcCCCcccC-------
Q 019775           98 ILSSDDILVMFSKSGNTEELLKVVPCAKAKGAYLVSVTSVEGN-----------ALAAVCDMNVHLPVERELC-------  159 (336)
Q Consensus        98 ~~~~~dlvi~iS~sG~~~~~~~~~~~ak~~g~~vi~IT~~~~s-----------~l~~~ad~~i~~~~~~~~~-------  159 (336)
                      .++++|++|++|.||.++--+++++++|++||++|++|+-.-|           .|.+++|+++.-.+.....       
T Consensus       101 ~i~~~DVliviSnSGrNpvpie~A~~~rekGa~vI~vTSl~ySq~~~SRh~SGK~Ly~~aDvVlDN~av~GDAvl~~a~~  180 (243)
T COG4821         101 QIRPNDVLIVISNSGRNPVPIEVAEYAREKGAKVIAVTSLDYSQSQASRHKSGKLLYEFADVVLDNGAVKGDAVLEIAGS  180 (243)
T ss_pred             cCCCCCEEEEEeCCCCCCcchHHHHHHHhcCCeEEEEehhhhhhhchhcccchhHHhhhcceeeeCCCcccchheeecCc
Confidence            4789999999999999999999999999999999999987766           6788899998654433211       


Q ss_pred             CCCCCChhHHHHHHHHHHHHHHHHHh---hcCCChHHHhhcCCCCchh
Q 019775          160 PFDLAPVTSTAIQMVFGDTVAIAMMG---ARNLTRDEYAANHPAGRIG  204 (336)
Q Consensus       160 ~~~~~~~~s~~~~~~l~d~l~~~~~~---~~~~~~~~~~~~~~~~~~~  204 (336)
                      .-..+++++.+.. .+++.++....+   .++.++.-|...+-++.-+
T Consensus       181 ei~~~ptSt~~g~-~ilqa~faeai~~mv~~g~~pPvf~S~Nidgad~  227 (243)
T COG4821         181 EIKVGPTSTVSGV-TILQATFAEAIELMVEKGYTPPVFLSANIDGADE  227 (243)
T ss_pred             cccccCcchhHHH-HHHHHHHHHHHHHHHhCCCCCCeeeecCCCChhH
Confidence            1123555544444 444544443333   3455555565555555433

>cd04802 CBS_pair_3 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.49  E-value=4.8e-13  Score=101.77  Aligned_cols=109  Identities=26%  Similarity=0.366  Sum_probs=93.5

Q ss_pred             CccccCCCcHHHHHHHHHhcCcceEEEEcCCCcEEEEeeHHHHHHHHHhcCCchhhhhHhhhcCCCCeeeCCCccHHHHH
Q 019775          221 LPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRRTLKASGEGIFKLTVGEMCNRSPRTIGPDAMAVEAM  300 (336)
Q Consensus       221 ~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~it~~dl~~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~l~~~~  300 (336)
                      +.+++++.++.++.+.|.+.+.+.+||+++ ++++|+++..++...+..........++.++|.+++.++.+++++.+++
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~l~~~~   81 (112)
T cd04802           3 VITVDPDTTVYEAANIMTENNIGRLIVVDN-EKPVGIITERDLVKKVVSRNLKPREVPVGEVMSTPLITIDPNASLNEAA   81 (112)
T ss_pred             cEEECCCCCHHHHHHHHHHCCCCEEEEEEC-CEEEEEEEHHHHHHHHhhccCCcccCCHHHhcCCCcEEECCCCCHHHHH
Confidence            457899999999999999888999999995 4999999999999876543222224578889988888999999999999


Q ss_pred             HHhcCCCCCccEeEEEeCCCcEEEEEehhhHhh
Q 019775          301 QKMESPPSPVQFLPVINRQNILIGIVTLHGLVS  333 (336)
Q Consensus       301 ~~~~~~~~~~~~l~Vv~~~~~~iGiit~~di~~  333 (336)
                      +.|.++  +...+||+++ ++++|+|++.|+++
T Consensus        82 ~~~~~~--~~~~~~Vv~~-~~~~Gvi~~~di~~  111 (112)
T cd04802          82 KLMAKH--GIKRLPVVDD-DELVGIVTTTDIVM  111 (112)
T ss_pred             HHHHHc--CCCeeEEeeC-CEEEEEEEhhhhhc
Confidence            999998  8889999988 49999999999975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04637 CBS_pair_24 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.49  E-value=6.6e-13  Score=102.69  Aligned_cols=111  Identities=23%  Similarity=0.362  Sum_probs=94.8

Q ss_pred             CccccCCCcHHHHHHHHHhcCcceEEEEcCCCcEEEEeeHHHHHHHHHhcC----C-----chhhhhHhhhcCCCCeeeC
Q 019775          221 LPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRRTLKASG----E-----GIFKLTVGEMCNRSPRTIG  291 (336)
Q Consensus       221 ~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~it~~dl~~~~~~~~----~-----~~~~~~i~~~~~~~~~~v~  291 (336)
                      +++++++.++.++.+.|.+.+++.+||+|+ |+++|+++..++...+....    .     .....++.++|.+++..+.
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~-~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~   81 (122)
T cd04637           3 VVTVEMDDRLEEVREIFEKHKFHHLLVVED-NELVGVISDRDYLKAISPFLGTAGETEKDLATLNRRAHQIMTRDPITVS   81 (122)
T ss_pred             ceEeCCCCCHHHHHHHHHhCCCCEEEEEeC-CeEEEEEEHHHHHHHHHHHhccccchHHHHHHHHhHHHHhhcCCCeeeC
Confidence            457899999999999999989999999996 89999999999987654210    0     0113568888988999999


Q ss_pred             CCccHHHHHHHhcCCCCCccEeEEEeCCCcEEEEEehhhHhhc
Q 019775          292 PDAMAVEAMQKMESPPSPVQFLPVINRQNILIGIVTLHGLVSA  334 (336)
Q Consensus       292 ~~~~l~~~~~~~~~~~~~~~~l~Vv~~~~~~iGiit~~di~~~  334 (336)
                      +++++.++++.|.++  +...+||++++|+++|++++.|+++.
T Consensus        82 ~~~~l~~~~~~~~~~--~~~~~~vv~~~~~~~Gvit~~dll~~  122 (122)
T cd04637          82 PDTPVDEASKLLLEN--SISCLPVVDENGQLIGIITWKDLLKY  122 (122)
T ss_pred             CCCcHHHHHHHHHHc--CCCeEeEECCCCCEEEEEEHHHhhhC
Confidence            999999999999998  88999999988999999999999863

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04601 CBS_pair_IMPDH This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein

Probab=99.48  E-value=2.5e-13  Score=102.93  Aligned_cols=105  Identities=20%  Similarity=0.296  Sum_probs=90.9

Q ss_pred             CccccCCCcHHHHHHHHHhcCcceEEEEcCCCcEEEEeeHHHHHHHHHhcCCchhhhhHhhhcCCCCeeeCC-CccHHHH
Q 019775          221 LPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRRTLKASGEGIFKLTVGEMCNRSPRTIGP-DAMAVEA  299 (336)
Q Consensus       221 ~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~it~~dl~~~~~~~~~~~~~~~i~~~~~~~~~~v~~-~~~l~~~  299 (336)
                      ++.++++.++.++.+.|.++++..+||+|++|+++|+++.+++.....      ...++.++|.+.+..+.. ++++.++
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~~~~------~~~~v~~~~~~~~~~~~~~~~~l~~~   77 (110)
T cd04601           4 PITVSPDATVAEALELMAEYGISGLPVVDDDGKLVGIVTNRDLRFETD------LDKPVSEVMTPENLLTTVEGTSLEEA   77 (110)
T ss_pred             CeEeCCCCcHHHHHHHHHHcCCceEEEEcCCCEEEEEEEhhHeeeccc------CCCCHHHhcccCceEEecCCCCHHHH
Confidence            457899999999999999889999999998899999999999864311      145788888777777777 9999999


Q ss_pred             HHHhcCCCCCccEeEEEeCCCcEEEEEehhhHhh
Q 019775          300 MQKMESPPSPVQFLPVINRQNILIGIVTLHGLVS  333 (336)
Q Consensus       300 ~~~~~~~~~~~~~l~Vv~~~~~~iGiit~~di~~  333 (336)
                      ++.|.+.  +.+.+||++++|+++|+|++.|+++
T Consensus        78 ~~~~~~~--~~~~~~Vv~~~~~~~Gvi~~~dil~  109 (110)
T cd04601          78 LELLHEH--KIEKLPVVDDEGKLKGLITVKDIEK  109 (110)
T ss_pred             HHHHHHh--CCCeeeEEcCCCCEEEEEEhhhhhc
Confidence            9999999  8999999998899999999999986

IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentosa.

>cd04594 CBS_pair_EriC_assoc_archaea This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the EriC CIC-type chloride channels in archaea

Probab=99.47  E-value=6.2e-13  Score=99.93  Aligned_cols=100  Identities=21%  Similarity=0.224  Sum_probs=88.6

Q ss_pred             cccCCCcHHHHHHHHHhcCcceEEEEcCCCcEEEEeeHHHHHHHHHhcCCchhhhhHhhhcCCCCeeeCCCccHHHHHHH
Q 019775          223 VCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRRTLKASGEGIFKLTVGEMCNRSPRTIGPDAMAVEAMQK  302 (336)
Q Consensus       223 ~~~~~~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~it~~dl~~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~l~~~~~~  302 (336)
                      ++++++++.++.+.+.+.+...+||+|+ ++++|+++.+++....        ..++.++|.+.+.++.++.++.++++.
T Consensus         5 ~v~~~~~~~~~~~~~~~~~~~~~~V~d~-~~~~G~v~~~~l~~~~--------~~~~~~~~~~~~~~v~~~~~l~~a~~~   75 (104)
T cd04594           5 KVKDYDKVYEAKRIMIENDLLSLPVVDY-NKFLGAVYLKDIENAT--------YGDVVDYIVRGIPYVRLTSTAEEAWEV   75 (104)
T ss_pred             EECCCCCHHHHHHHHHHcCCcEEEEEEC-CEEEEEEEHHHHhhhc--------ccchhhhhhcCCcEEcCCCCHHHHHHH
Confidence            6889999999999999989999999997 9999999999998532        134667788888999999999999999


Q ss_pred             hcCCCCCccEeEEEeCCCcEEEEEehhhHhhc
Q 019775          303 MESPPSPVQFLPVINRQNILIGIVTLHGLVSA  334 (336)
Q Consensus       303 ~~~~~~~~~~l~Vv~~~~~~iGiit~~di~~~  334 (336)
                      |.++  +...+||+++ |+++|+||+.|++++
T Consensus        76 ~~~~--~~~~~~Vv~~-~~~iGvit~~dl~~~  104 (104)
T cd04594          76 MMKN--KTRWCPVVDD-GKFKGIVTLDSILDA  104 (104)
T ss_pred             HHHc--CcceEEEEEC-CEEEEEEEHHHhhcC
Confidence            9999  8899999985 999999999999863

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS do

>cd04610 CBS_pair_ParBc_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a ParBc (ParB-like nuclease) domain downstream

Probab=99.46  E-value=5.3e-13  Score=100.62  Aligned_cols=103  Identities=20%  Similarity=0.300  Sum_probs=91.4

Q ss_pred             CccccCCCcHHHHHHHHHhcCcceEEEEcCCCcEEEEeeHHHHHHHHHhcCCchhhhhHhhhcCCCCeeeCCCccHHHHH
Q 019775          221 LPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRRTLKASGEGIFKLTVGEMCNRSPRTIGPDAMAVEAM  300 (336)
Q Consensus       221 ~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~it~~dl~~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~l~~~~  300 (336)
                      +++++.+.+++++.+.|.+.+...+||+|+ ++++|+++..+|+..    .   ...++.++|.+.+..+.+++++.+++
T Consensus         4 ~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~-~~~~g~v~~~~l~~~----~---~~~~~~~~~~~~~~~v~~~~~l~~~~   75 (107)
T cd04610           4 VITVSPDNTVKDVIKLIKETGHDGFPVVDN-GKVVGIVSARDLLGK----D---PDETVEEIMSKDLVVAVPEMDIMDAA   75 (107)
T ss_pred             cEEECCCCcHHHHHHHHHHcCCCeeeEeEC-CEEEEEEEHHHhhcc----C---ccccHHHhCCCCCeEECCCCCHHHHH
Confidence            567899999999999998888889999986 899999999999852    1   13568899988889999999999999


Q ss_pred             HHhcCCCCCccEeEEEeCCCcEEEEEehhhHhh
Q 019775          301 QKMESPPSPVQFLPVINRQNILIGIVTLHGLVS  333 (336)
Q Consensus       301 ~~~~~~~~~~~~l~Vv~~~~~~iGiit~~di~~  333 (336)
                      +.|.++  +...+||++++|+++|+|+..|+++
T Consensus        76 ~~~~~~--~~~~~~Vv~~~g~~~Gvi~~~di~~  106 (107)
T cd04610          76 RVMFRT--GISKLPVVDENNNLVGIITNTDVIR  106 (107)
T ss_pred             HHHHHh--CCCeEeEECCCCeEEEEEEHHHhhc
Confidence            999988  8889999998899999999999986

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04584 CBS_pair_ACT_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria

Probab=99.46  E-value=1e-12  Score=101.38  Aligned_cols=111  Identities=27%  Similarity=0.335  Sum_probs=94.7

Q ss_pred             CccccCCCcHHHHHHHHHhcCcceEEEEcCCCcEEEEeeHHHHHHHHHhcCC--------chhhhhHhhhcCCCCeeeCC
Q 019775          221 LPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRRTLKASGE--------GIFKLTVGEMCNRSPRTIGP  292 (336)
Q Consensus       221 ~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~it~~dl~~~~~~~~~--------~~~~~~i~~~~~~~~~~v~~  292 (336)
                      +++++++.++.++.+.+.+.+++.+||+|++++++|+++..++.........        .....++.++|.+++..+..
T Consensus         3 ~~~~~~~~~l~~a~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~   82 (121)
T cd04584           3 VVTITPTTTIAEALELMREHKIRHLPVVDEEGRLVGIVTDRDLRDASPSPFTTLSEHELYLLLKMPVKEIMTKDVITVHP   82 (121)
T ss_pred             CEEECCCCCHHHHHHHHHHcCCCcccEECCCCcEEEEEEHHHHHHHhhhhcccchhhhhhhhcCcCHHHHhhCCCeEECC
Confidence            4578999999999999998889999999988999999999999875432110        11235688888888999999


Q ss_pred             CccHHHHHHHhcCCCCCccEeEEEeCCCcEEEEEehhhHhhc
Q 019775          293 DAMAVEAMQKMESPPSPVQFLPVINRQNILIGIVTLHGLVSA  334 (336)
Q Consensus       293 ~~~l~~~~~~~~~~~~~~~~l~Vv~~~~~~iGiit~~di~~~  334 (336)
                      ++++.++++.|.+.  +...+||+++ |+++|+++..|++++
T Consensus        83 ~~~l~~~~~~~~~~--~~~~~~V~~~-~~~~Gvv~~~di~~~  121 (121)
T cd04584          83 LDTVEEAALLMREH--RIGCLPVVED-GRLVGIITETDLLRT  121 (121)
T ss_pred             CCcHHHHHHHHHHc--CCCeEEEeeC-CEEEEEEEHHHhhcC
Confidence            99999999999998  8899999988 999999999999864

Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The in

>cd04599 CBS_pair_GGDEF_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain

Probab=99.46  E-value=6e-13  Score=99.97  Aligned_cols=102  Identities=26%  Similarity=0.338  Sum_probs=90.6

Q ss_pred             CccccCCCcHHHHHHHHHhcCcceEEEEcCCCcEEEEeeHHHHHHHHHhcCCchhhhhHhhhcCCCCeeeCCCccHHHHH
Q 019775          221 LPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRRTLKASGEGIFKLTVGEMCNRSPRTIGPDAMAVEAM  300 (336)
Q Consensus       221 ~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~it~~dl~~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~l~~~~  300 (336)
                      ++.++++.++.++.+.|.++++..+||+| +++++|+++.+++.....       ..++.++|.+++.++.+++++.+++
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~V~d-~~~~~Giv~~~~l~~~~~-------~~~~~~~~~~~~~~v~~~~~l~~~~   74 (105)
T cd04599           3 PITIDPLDSVGRAARLMEKHRIGGLPVVE-DGKLVGIITSRDVRRAHP-------NRLVADAMTREVVTISPEASLLEAK   74 (105)
T ss_pred             CEEECCCCcHHHHHHHHHHcCCCEEEEEE-CCEEEEEEehHHhhcccc-------cCCHHHHccCCCEEECCCCCHHHHH
Confidence            45789999999999999988889999998 689999999999986321       3457888888899999999999999


Q ss_pred             HHhcCCCCCccEeEEEeCCCcEEEEEehhhHhh
Q 019775          301 QKMESPPSPVQFLPVINRQNILIGIVTLHGLVS  333 (336)
Q Consensus       301 ~~~~~~~~~~~~l~Vv~~~~~~iGiit~~di~~  333 (336)
                      +.|.++  +...+||+++ |+++|+||..|++.
T Consensus        75 ~~~~~~--~~~~~~Vv~~-~~~~G~it~~~l~~  104 (105)
T cd04599          75 RLMEEK--KIERLPVLRE-RKLVGIITKGTIAL  104 (105)
T ss_pred             HHHHHc--CCCEeeEEEC-CEEEEEEEHHHhcc
Confidence            999999  8999999998 99999999999974

The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04633 CBS_pair_20 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.46  E-value=6.9e-13  Score=102.39  Aligned_cols=110  Identities=24%  Similarity=0.307  Sum_probs=93.9

Q ss_pred             CccccCCCcHHHHHHHHHhcCcceEEEEcCCCcEEEEeeHHHHHHHHHhcCC---------chhhhhHhhhcCCCCeeeC
Q 019775          221 LPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRRTLKASGE---------GIFKLTVGEMCNRSPRTIG  291 (336)
Q Consensus       221 ~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~it~~dl~~~~~~~~~---------~~~~~~i~~~~~~~~~~v~  291 (336)
                      +++++++.++.++.+.|.+.+.+.+||+|+ |+++|+++..++...+.....         .....++.++|.+++..+.
T Consensus         3 ~~~i~~~~~~~~~~~~l~~~~~~~i~V~~~-~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~   81 (121)
T cd04633           3 VITVSPDDRVSHARRLMLDHDISRLPVIEG-GKLVGIVTEKDIADALRSFRPLVRDRHQERRIRNLPVSDIMTRPVITIE   81 (121)
T ss_pred             CEEECCCCcHHHHHHHHHHcCCCeeEEEEC-CEEEEEEchHHHHHhhhhhhhcccchhhhhhhhccCHHHHccCCceEEC
Confidence            457899999999999999889999999996 999999999999876542111         0123468888888899999


Q ss_pred             CCccHHHHHHHhcCCCCCccEeEEEeCCCcEEEEEehhhHhhc
Q 019775          292 PDAMAVEAMQKMESPPSPVQFLPVINRQNILIGIVTLHGLVSA  334 (336)
Q Consensus       292 ~~~~l~~~~~~~~~~~~~~~~l~Vv~~~~~~iGiit~~di~~~  334 (336)
                      +++++.++++.|.+.  +.+.+||+++ |+++|+|+..|++++
T Consensus        82 ~~~~l~~~~~~~~~~--~~~~~~Vv~~-~~~~Gvi~~~dl~~~  121 (121)
T cd04633          82 PDTSVSDVASLMLEN--NIGGLPVVDD-GKLVGIVTRTDILRY  121 (121)
T ss_pred             CCCcHHHHHHHHHHc--CCCcccEEEC-CEEEEEEEHHHhhcC
Confidence            999999999999998  8999999998 999999999999863

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04591 CBS_pair_EriC_assoc_euk_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes and bacteria

Probab=99.46  E-value=8.1e-13  Score=99.59  Aligned_cols=99  Identities=24%  Similarity=0.321  Sum_probs=88.0

Q ss_pred             CccccCCCcHHHHHHHHHhcCcceEEEEcC---CCcEEEEeeHHHHHHHHHhcCCchhhhhHhhhcCCCCeeeCCCccHH
Q 019775          221 LPVCKEGDLIMDQLVELTSKGCGCLLVIDE---EYHLIGTFTDGDLRRTLKASGEGIFKLTVGEMCNRSPRTIGPDAMAV  297 (336)
Q Consensus       221 ~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~---~~~~~G~it~~dl~~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~l~  297 (336)
                      ...++++.++.++.+.+.+.++..+||+++   +|+++|+++.+++......            +|.+++.++.+++++.
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~~~G~v~~~dl~~~~~~------------~m~~~~~~v~~~~~l~   71 (105)
T cd04591           4 VVLLPEGMTVEDLESLLSTTSHNGFPVVDSTEESPRLVGYILRSQLVVALKN------------YIDPSPFTVSPRTSLE   71 (105)
T ss_pred             eEEecccccHHHHHHHHHhCCCCCcceEcCCCCCCEEEEEEeHHHHHHHHHH------------hccCCCceECCCCcHH
Confidence            457899999999999999988889999997   6899999999999876532            6777888999999999


Q ss_pred             HHHHHhcCCCCCccEeEEEeCCCcEEEEEehhhHhhc
Q 019775          298 EAMQKMESPPSPVQFLPVINRQNILIGIVTLHGLVSA  334 (336)
Q Consensus       298 ~~~~~~~~~~~~~~~l~Vv~~~~~~iGiit~~di~~~  334 (336)
                      ++++.|.++  +.+.+||++ +|+++|+||+.|++++
T Consensus        72 ~~~~~~~~~--~~~~~pVv~-~~~~~Gvvt~~dl~~~  105 (105)
T cd04591          72 KVHQLFRKL--GLRHLLVVD-EGRLVGIITRKDLLKA  105 (105)
T ss_pred             HHHHHHHHc--CCCEEEEEE-CCeEEEEEEhhhhhcC
Confidence            999999999  899999996 4999999999999864

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS

>cd04609 CBS_pair_PALP_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream

Probab=99.45  E-value=1.3e-12  Score=98.87  Aligned_cols=108  Identities=21%  Similarity=0.329  Sum_probs=91.1

Q ss_pred             CccccCCCcHHHHHHHHHhcCcceEEEEcCCCcEEEEeeHHHHHHHHHhcCCchhhhhHhhhcCCCCeeeCCCccHHHHH
Q 019775          221 LPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRRTLKASGEGIFKLTVGEMCNRSPRTIGPDAMAVEAM  300 (336)
Q Consensus       221 ~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~it~~dl~~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~l~~~~  300 (336)
                      +++++++.++.++.+.|.+++.+.+||+++ ++++|+++..++...+..... ....++.++|.+++..+++++++.+++
T Consensus         3 ~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~-~~~~G~v~~~dl~~~~~~~~~-~~~~~~~~~~~~~~~~v~~~~~l~~~~   80 (110)
T cd04609           3 VVSVAPDDTVSQAIERMREYGVSQLPVVDD-GRVVGSIDESDLLDALIEGKA-KFSLPVREVMGEPLPTVDPDAPIEELS   80 (110)
T ss_pred             cEEECCCCcHHHHHHHHHHcCCceeeEeeC-CeeEEEEeHHHHHHHHhcccc-ccCcCHHHHhcCCCceeCCCCcHHHHH
Confidence            457899999999999999999999999997 999999999999987654221 113568888888888999999999999


Q ss_pred             HHhcCCCCCccEeEEEeCCCcEEEEEehhhHhhc
Q 019775          301 QKMESPPSPVQFLPVINRQNILIGIVTLHGLVSA  334 (336)
Q Consensus       301 ~~~~~~~~~~~~l~Vv~~~~~~iGiit~~di~~~  334 (336)
                      +.|.+.  .  .+||++++|+++|+||+.|+++.
T Consensus        81 ~~~~~~--~--~~~vv~~~~~~~Gvvt~~di~~~  110 (110)
T cd04609          81 ELLDRG--N--VAVVVDEGGKFVGIITRADLLKY  110 (110)
T ss_pred             HHHHhC--C--ceeEEecCCeEEEEEeHHHhhcC
Confidence            999874  2  37888888999999999999863

The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a pote

>cd02205 CBS_pair The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.45  E-value=1.9e-12  Score=97.89  Aligned_cols=111  Identities=30%  Similarity=0.441  Sum_probs=95.3

Q ss_pred             CccccCCCcHHHHHHHHHhcCcceEEEEcCCCcEEEEeeHHHHHHHHHhcCCchhhhhHhhhcCCCCeeeCCCccHHHHH
Q 019775          221 LPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRRTLKASGEGIFKLTVGEMCNRSPRTIGPDAMAVEAM  300 (336)
Q Consensus       221 ~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~it~~dl~~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~l~~~~  300 (336)
                      +++++++.++.++.+.|.+.+...+||++++++++|+++.+++.......... ....+.+++..++..+.+++++.+++
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~G~v~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (113)
T cd02205           3 VVTVSPDDTVAEALRLMLEHGISGLPVVDDDGRLVGIVTERDLLRALAEGGLD-PLVTVGDVMTRDVVTVSPDTSLEEAA   81 (113)
T ss_pred             ceEecCCCCHHHHHHHHHhcCCceEEEECCCCCEEEEEeHHHHHHHHHhccCC-ccccHHHHhcCCceecCCCcCHHHHH
Confidence            45789999999999999998889999999889999999999999877642211 11226678888888999999999999


Q ss_pred             HHhcCCCCCccEeEEEeCCCcEEEEEehhhHhhc
Q 019775          301 QKMESPPSPVQFLPVINRQNILIGIVTLHGLVSA  334 (336)
Q Consensus       301 ~~~~~~~~~~~~l~Vv~~~~~~iGiit~~di~~~  334 (336)
                      +.|.+.  +...+||++++|+++|+++..|+++.
T Consensus        82 ~~~~~~--~~~~~~V~~~~~~~~G~i~~~dl~~~  113 (113)
T cd02205          82 ELMLEH--GIRRLPVVDDEGRLVGIVTRSDILRA  113 (113)
T ss_pred             HHHHHc--CCCEEEEEcCCCcEEEEEEHHHhhcC
Confidence            999998  88999999998999999999999863

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generali

>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein

Probab=99.44  E-value=5.7e-13  Score=125.21  Aligned_cols=125  Identities=22%  Similarity=0.257  Sum_probs=106.2

Q ss_pred             CCCCchhhh----hhhhhhhccccCCCCccccCCCcHHHHHHHHHhcCcceEEEEcCCCcEEEEeeHHHHHHHHHhcCCc
Q 019775          198 HPAGRIGKS----LIFKVQDVMKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRRTLKASGEG  273 (336)
Q Consensus       198 ~~~~~~~~~----~~~~v~~im~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~it~~dl~~~~~~~~~~  273 (336)
                      |++.+++.+    ..+++.++|.+++  +++.++.+++++.++|.+++.+.+||+| +++++|+||.+||...    .  
T Consensus        73 h~n~~i~~qae~v~~VKv~eim~~~p--vtv~p~~tI~eA~~lm~~~~~~~~vVvD-~gklvGIVT~rDL~~~----~--  143 (475)
T TIGR01303        73 PQDLPIPAVKQTVAFVKSRDLVLDTP--ITLAPHDTVSDAMALIHKRAHGAAVVIL-EDRPVGLVTDSDLLGV----D--  143 (475)
T ss_pred             eCCCCHHHHHHHHhhcchhhccccCC--eEECCCCCHHHHHHHHHhcCCeEEEEEE-CCEEEEEEEHHHhhcC----C--
Confidence            444454443    3667788888774  4899999999999999999999999998 4799999999998532    1  


Q ss_pred             hhhhhHhhhcCCCCeeeCCCccHHHHHHHhcCCCCCccEeEEEeCCCcEEEEEehhhHhhc
Q 019775          274 IFKLTVGEMCNRSPRTIGPDAMAVEAMQKMESPPSPVQFLPVINRQNILIGIVTLHGLVSA  334 (336)
Q Consensus       274 ~~~~~i~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~l~Vv~~~~~~iGiit~~di~~~  334 (336)
                       ...++.++|.+++.++.+++++.++++.|.++  +.+.+||+|++|+++|+||++||++.
T Consensus       144 -~~~~V~dIMt~~litv~~~~sL~eAl~lM~~~--~i~~LPVVD~~g~LvGIIT~~DLl~~  201 (475)
T TIGR01303       144 -RFTQVRDIMSTDLVTAPADTEPRKAFDLLEHA--PRDVAPLVDADGTLAGILTRTGALRA  201 (475)
T ss_pred             -CCCCHHHHccCCceEeCCCCcHHHHHHHHHHc--CCCEEEEEcCCCeEEEEEEHHHHHHH
Confidence             13579999999999999999999999999999  99999999988999999999999974

This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.

>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase

Probab=99.42  E-value=1e-12  Score=123.73  Aligned_cols=115  Identities=19%  Similarity=0.300  Sum_probs=101.1

Q ss_pred             hhhhccccCCCCccccCCCcHHHHHHHHHhcCcceEEEEcCC---CcEEEEeeHHHHHHHHHhcCCchhhhhHhhhcC-C
Q 019775          210 KVQDVMKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEE---YHLIGTFTDGDLRRTLKASGEGIFKLTVGEMCN-R  285 (336)
Q Consensus       210 ~v~~im~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~---~~~~G~it~~dl~~~~~~~~~~~~~~~i~~~~~-~  285 (336)
                      ..+++|.++  +++++++.++.++.+.|.+++++.+||+|++   ++++|+|+.+||+....      ...++.++|. +
T Consensus        81 ~~~~~~~~~--~vtl~~~~tv~eal~~m~~~~~s~lpVvd~~~~~~~lvGIVt~rDL~~~~~------~~~~V~dvm~~~  152 (450)
T TIGR01302        81 RAENGIISD--PVTISPETTVADVLELMERKGISGIPVVEDGDMTGKLVGIITKRDIRFVKD------KGKPVSEVMTRE  152 (450)
T ss_pred             cccCceecC--ceEeCCCCCHHHHHHHHHHcCCCEEEEEeCCCCCCeEEEEEEHHHHhhhhc------CCCCHHHhhCCC
Confidence            446667766  4589999999999999999999999999987   79999999999975321      1467899998 4


Q ss_pred             CCeeeCCCccHHHHHHHhcCCCCCccEeEEEeCCCcEEEEEehhhHhhc
Q 019775          286 SPRTIGPDAMAVEAMQKMESPPSPVQFLPVINRQNILIGIVTLHGLVSA  334 (336)
Q Consensus       286 ~~~~v~~~~~l~~~~~~~~~~~~~~~~l~Vv~~~~~~iGiit~~di~~~  334 (336)
                      ++.++.+++++.++++.|.++  +.+.+||+|++|+++|+||+.||++.
T Consensus       153 ~~~~V~~~~sl~eal~~m~~~--~~~~lpVVDe~G~lvGiVT~~DIl~~  199 (450)
T TIGR01302       153 EVITVPEGIDLEEALKVLHEH--RIEKLPVVDKNGELVGLITMKDIVKR  199 (450)
T ss_pred             CCEEECCCCcHHHHHHHHHHc--CCCeEEEEcCCCcEEEEEEhHHhhhc
Confidence            889999999999999999999  99999999999999999999999875

This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.

>TIGR02128 G6PI_arch bifunctional phosphoglucose/phosphomannose isomerase

Probab=99.42  E-value=1.1e-11  Score=110.75  Aligned_cols=99  Identities=28%  Similarity=0.330  Sum_probs=85.1

Q ss_pred             cCCCeEEEEeccchHHHHHHHHHHHHhcC--CeeeecCCccccccccCCCCCCcEEEEEeCCCCcHHHHHHHHHHHHcCC
Q 019775           52 KCRGTIFFTGVGKSGFVANKISQTLISLG--IKSGFLNPLDALHGDIGILSSDDILVMFSKSGNTEELLKVVPCAKAKGA  129 (336)
Q Consensus        52 ~a~~~I~i~G~G~s~~~a~~~~~~l~~~g--~~~~~~~~~~~~~~~~~~~~~~dlvi~iS~sG~~~~~~~~~~~ak~~g~  129 (336)
                      .+ ++|+++|.|.|..+|.++.+.|...+  ++++...+..    .....+++|++|++|.||++.+++.+++.|+++|+
T Consensus        20 ~~-~~I~i~G~G~S~~~a~~l~~~l~~~~~~~~v~~~~d~~----l~~~~~~~dlvI~iS~SG~t~e~~~a~~~A~~~g~   94 (308)
T TIGR02128        20 IY-DEIVICGMGGSGIAGRIISILLLEKSFQGPVFVVKDYR----LPRFVDGKTLLIAVSYSGNTEETLSAVEEAKKKGA   94 (308)
T ss_pred             cC-CEEEEEEecHHHHHHHHHHHHHHHhCCCccEEEEcCcc----ccccCCCCeEEEEEcCCCCCHHHHHHHHHHHHcCC
Confidence            36 59999999999999999999999885  5777765542    23456899999999999999999999999999999


Q ss_pred             eEEEEeCCCCCcccccc----CEEEEcCCCcc
Q 019775          130 YLVSVTSVEGNALAAVC----DMNVHLPVERE  157 (336)
Q Consensus       130 ~vi~IT~~~~s~l~~~a----d~~i~~~~~~~  157 (336)
                      ++|+||+  +++++++|    +.++.+|.+..
T Consensus        95 ~ii~iT~--~g~L~~~a~~~~~~~i~vP~~~~  124 (308)
T TIGR02128        95 KVIAITS--GGRLEEMAKERGLDVIKIPKGLQ  124 (308)
T ss_pred             EEEEECC--CcHHHHHHHhcCCeEEEcCCCCC
Confidence            9999996  46899998    78888888644

This bifunctional isomerase is a member of the larger PGI superfamily and only distantly related to other glucose-6-phosphate isomerases. The family is limited to the archaea.

>PRK11573 hypothetical protein; Provisional

Probab=99.42  E-value=1.8e-12  Score=120.68  Aligned_cols=123  Identities=15%  Similarity=0.158  Sum_probs=104.8

Q ss_pred             hhhhhhccccCCCCccccCCCcHHHHHHHHHhcCcceEEEEcCC-CcEEEEeeHHHHHHHHHhcCCchhhhhHhhhcCCC
Q 019775          208 IFKVQDVMKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEE-YHLIGTFTDGDLRRTLKASGEGIFKLTVGEMCNRS  286 (336)
Q Consensus       208 ~~~v~~im~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~-~~~~G~it~~dl~~~~~~~~~~~~~~~i~~~~~~~  286 (336)
                      ..+|+++|.|...+.+++.+.++.++.+.+.+++++++||++++ +.++|+++.+|++....+... .....+.+++ ++
T Consensus       186 ~~~v~eiMtPr~~i~~l~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IiGiv~~kDll~~~~~~~~-~~~~~l~~~~-r~  263 (413)
T PRK11573        186 KVTVDDIMVPRNEIVGIDINDDWKSILRQLTHSPHGRIVLYRDSLDDAISMLRVREAYRLMTEKKE-FTKENMLRAA-DE  263 (413)
T ss_pred             CCChhhcCCccceEEEEECCCCHHHHHHHHHhCCCceEEEEcCCCCceEEEEEHHHHHHHhhccCc-CCHHHHHhhc-cC
Confidence            44899999999999999999999999999999999999999854 689999999999975543211 1123455555 46


Q ss_pred             CeeeCCCccHHHHHHHhcCCCCCccEeEEEeCCCcEEEEEehhhHhhc
Q 019775          287 PRTIGPDAMAVEAMQKMESPPSPVQFLPVINRQNILIGIVTLHGLVSA  334 (336)
Q Consensus       287 ~~~v~~~~~l~~~~~~~~~~~~~~~~l~Vv~~~~~~iGiit~~di~~~  334 (336)
                      +.+|+++.++.++++.|+++  +.+...|+|+.|...|+||..||++.
T Consensus       264 ~~~Vpe~~~l~~lL~~~~~~--~~~~AiVvDEyG~~~GiVTleDilEe  309 (413)
T PRK11573        264 IYFVPEGTPLSTQLVKFQRN--KKKVGLVVDEYGDIQGLVTVEDILEE  309 (413)
T ss_pred             CeEeCCCCcHHHHHHHHHhc--CCeEEEEEecCCCeEEEeeHHHHHHH
Confidence            78999999999999999999  89999999999999999999999863

>TIGR00400 mgtE Mg2+ transporter (mgtE)

Probab=99.42  E-value=9.2e-13  Score=124.34  Aligned_cols=115  Identities=19%  Similarity=0.175  Sum_probs=100.6

Q ss_pred             hhhhhccccCCCCccccCCCcHHHHHHHHHh-----cCcceEEEEcCCCcEEEEeeHHHHHHHHHhcCCchhhhhHhhhc
Q 019775          209 FKVQDVMKPQKELPVCKEGDLIMDQLVELTS-----KGCGCLLVIDEEYHLIGTFTDGDLRRTLKASGEGIFKLTVGEMC  283 (336)
Q Consensus       209 ~~v~~im~~~~~~~~~~~~~~v~~~~~~~~~-----~~~~~ipVvd~~~~~~G~it~~dl~~~~~~~~~~~~~~~i~~~~  283 (336)
                      .+++++|.++  +++++++.|++++.+.+++     ++...+||+|++++++|+++.+|++..    .   ...++.++|
T Consensus       131 ~tvg~iMt~~--~~~v~~~~tv~eal~~l~~~~~~~~~~~~v~Vvd~~~~l~GvV~l~dLl~a----~---~~~~v~~im  201 (449)
T TIGR00400       131 DSAGRIMTIE--YVELKEDYTVGKALDYIRRVAKTKEDIYTLYVTNESKHLKGVLSIRDLILA----K---PEEILSSIM  201 (449)
T ss_pred             chHHHhCcCc--eEEECCCCcHHHHHHHHHhcCCCccceeEEEEECCCCeEEEEEEHHHHhcC----C---CCCcHHHHh
Confidence            4789999976  6699999999999999975     345678999988999999999998752    1   135799999


Q ss_pred             CCCCeeeCCCccHHHHHHHhcCCCCCccEeEEEeCCCcEEEEEehhhHhhc
Q 019775          284 NRSPRTIGPDAMAVEAMQKMESPPSPVQFLPVINRQNILIGIVTLHGLVSA  334 (336)
Q Consensus       284 ~~~~~~v~~~~~l~~~~~~~~~~~~~~~~l~Vv~~~~~~iGiit~~di~~~  334 (336)
                      .+++.++.+++++.++++.|+++  +...+||+|++|+++|+||..|+++.
T Consensus       202 ~~~~~~v~~~~~~~eal~~m~~~--~~~~lpVVD~~g~lvGiIt~~Dil~~  250 (449)
T TIGR00400       202 RSSVFSIVGVNDQEEVARLIQKY--DFLAVPVVDNEGRLVGIVTVDDIIDV  250 (449)
T ss_pred             CCCCeeECCCCCHHHHHHHHHHc--CCCEEeEEcCCCeEEEEEEHHHHHHH
Confidence            99888999999999999999999  89999999998999999999999863

This family of prokaryotic proteins models a class of Mg++ transporter first described in Bacillus firmus. May form a homodimer.

>KOG1268 consensus Glucosamine 6-phosphate synthetases, contain amidotransferase and phosphosugar isomerase domains [Cell wall/membrane/envelope biogenesis]

Probab=99.41  E-value=2.9e-12  Score=116.52  Aligned_cols=172  Identities=20%  Similarity=0.202  Sum_probs=136.0

Q ss_pred             cCCCCcchHHHHHHHHHHHHHHHHHHhcC-C-------hhHHHHHHHHHHcCCCeEEEEeccchHHHHHHHHHHHHhc-C
Q 019775           10 LLPHKVSENTLLDLFKSQQDHLNYFFQHL-S-------LPHTLTFTQTLLKCRGTIFFTGVGKSGFVANKISQTLISL-G   80 (336)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~-------~~~i~~~~~~i~~a~~~I~i~G~G~s~~~a~~~~~~l~~~-g   80 (336)
                      .+.+.+....+++-+-.+.+.+-.|..-. +       ...++.-...|.++ +|+.++|+|.|++.|..-..-|..+ +
T Consensus       304 qImKG~yd~yMqKEI~EQpeS~~ntMRGRv~~~~~~V~LGGlk~~l~~irr~-rRli~iacgtSyhs~~A~R~ilEEL~e  382 (670)
T KOG1268|consen  304 QIMKGNYDYYMQKEIYEQPESLVNTMRGRVSFPLNKVVLGGLKDYLPEIRRC-RRLIMVACGTSYHSALATRPILEELSE  382 (670)
T ss_pred             HHcCCchHhhhhhHHhhCchHHHHhccceeccccceeeecCCcchhhhhhhc-cccEEEEecchHHHHHHHHHHHHHHhc
Confidence            34455556666666666677776666432 1       23466777888899 7999999999999988887777766 6


Q ss_pred             CeeeecCCccccccccCCCCCCcEEEEEeCCCCcHHHHHHHHHHHHcCCeEEEEeCCCCCccccccCEEEEcCCCcccCC
Q 019775           81 IKSGFLNPLDALHGDIGILSSDDILVMFSKSGNTEELLKVVPCAKAKGAYLVSVTSVEGNALAAVCDMNVHLPVERELCP  160 (336)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~dlvi~iS~sG~~~~~~~~~~~ak~~g~~vi~IT~~~~s~l~~~ad~~i~~~~~~~~~~  160 (336)
                      ++|..--.++.+... ..+-.+|+++++|+||+|.+++-++++|+++|+-+|.|||..+|.+++..++-+.+.++.|   
T Consensus       383 iPV~vElAsDflDR~-~pifRdDvc~FvSqSGETaDtllaL~Yc~~~gAl~vGvtNtvGSsIsR~thCGvHiNaGpE---  458 (670)
T KOG1268|consen  383 IPVSVELASDFLDRN-TPIFRDDVCFFVSQSGETADTLLALRYCKERGALTVGVTNTVGSSISRETHCGVHINAGPE---  458 (670)
T ss_pred             CCeeeehhhhhHhcC-CCceeccEEEEEecCCchHHHHHHHHHHHhcCceEEEeecccCcccccccccceeccCCCc---
Confidence            666654455555443 3455899999999999999999999999999999999999999999999999999999877   


Q ss_pred             CCCCChhHHHHHHHHHHHHHHHHHhh
Q 019775          161 FDLAPVTSTAIQMVFGDTVAIAMMGA  186 (336)
Q Consensus       161 ~~~~~~~s~~~~~~l~d~l~~~~~~~  186 (336)
                      .+.+.+.++++|+..+-++...+...
T Consensus       459 igvAsTKaYTSQ~i~lvm~aL~~s~d  484 (670)
T KOG1268|consen  459 IGVASTKAYTSQYIALVMFALWMSED  484 (670)
T ss_pred             cceeechHHHHHHHHHHHHHHHhccc
Confidence            67788888999988777777666654

>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed

Probab=99.40  E-value=1.8e-12  Score=123.34  Aligned_cols=115  Identities=19%  Similarity=0.297  Sum_probs=101.9

Q ss_pred             hhhhccccCCCCccccCCCcHHHHHHHHHhcCcceEEEEcCCCcEEEEeeHHHHHHHHHhcCCchhhhhHhhhcC-CCCe
Q 019775          210 KVQDVMKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRRTLKASGEGIFKLTVGEMCN-RSPR  288 (336)
Q Consensus       210 ~v~~im~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~it~~dl~~~~~~~~~~~~~~~i~~~~~-~~~~  288 (336)
                      .++++|.++  +++++++.++.++.+.|.+++++.+||+|++++++|+|+.+|+.....      ...++.++|. +++.
T Consensus        88 ~~~dim~~~--~v~i~~~~tv~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~DL~~~~~------~~~~V~dim~~~~~v  159 (486)
T PRK05567         88 RSESGVVTD--PVTVTPDTTLAEALALMARYGISGVPVVDENGKLVGIITNRDVRFETD------LSQPVSEVMTKERLV  159 (486)
T ss_pred             hhhhcccCC--CeEeCCCCCHHHHHHHHHHhCCCEEEEEccCCEEEEEEEHHHhhhccc------CCCcHHHHcCCCCCE
Confidence            467788876  458999999999999999999999999999999999999999964321      1457889998 6788


Q ss_pred             eeCCCccHHHHHHHhcCCCCCccEeEEEeCCCcEEEEEehhhHhhc
Q 019775          289 TIGPDAMAVEAMQKMESPPSPVQFLPVINRQNILIGIVTLHGLVSA  334 (336)
Q Consensus       289 ~v~~~~~l~~~~~~~~~~~~~~~~l~Vv~~~~~~iGiit~~di~~~  334 (336)
                      ++.+++++.++++.|.++  +.+.+||+|++|+++|+||..||++.
T Consensus       160 ~v~~~~sl~eal~~m~~~--~~~~lpVVDe~g~lvGiIT~~DLl~~  203 (486)
T PRK05567        160 TVPEGTTLEEALELLHEH--RIEKLPVVDDNGRLKGLITVKDIEKA  203 (486)
T ss_pred             EECCCCCHHHHHHHHHHc--CCCEEEEEcCCCcEEEEEEhHHhhhh
Confidence            999999999999999999  99999999999999999999999864

>PLN02274 inosine-5'-monophosphate dehydrogenase

Probab=99.40  E-value=2.2e-12  Score=122.33  Aligned_cols=110  Identities=17%  Similarity=0.126  Sum_probs=97.1

Q ss_pred             cccCCCCccccCCCcHHHHHHHHHhcCcceEEEEcC---CCcEEEEeeHHHHHHHHHhcCCchhhhhHhhhcCCC--Cee
Q 019775          215 MKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVIDE---EYHLIGTFTDGDLRRTLKASGEGIFKLTVGEMCNRS--PRT  289 (336)
Q Consensus       215 m~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~---~~~~~G~it~~dl~~~~~~~~~~~~~~~i~~~~~~~--~~~  289 (336)
                      |.++  +++++++.++.++.++|.+++++.+||+|+   +++++|+||.+|+....   .   ...++.++|.+.  ..+
T Consensus       106 mi~d--pvtV~pd~tV~dA~~lm~~~~~~~lpVvD~~~~~GklvGIVT~~DL~~v~---~---~~~~V~eIMt~~~~lvt  177 (505)
T PLN02274        106 FVSD--PVVKSPSSTISSLDELKASRGFSSVCVTETGTMGSKLLGYVTKRDWDFVN---D---RETKLSEVMTSDDDLVT  177 (505)
T ss_pred             ccCC--CeeeCCCCcHHHHHHHHHhcCCceEEEEeCCCcCCeEEEEEEHHHHhhcc---c---cCCcHHHHhccCCCcEE
Confidence            5665  458999999999999999999999999996   47999999999997532   1   256799999876  679


Q ss_pred             eCCCccHHHHHHHhcCCCCCccEeEEEeCCCcEEEEEehhhHhhc
Q 019775          290 IGPDAMAVEAMQKMESPPSPVQFLPVINRQNILIGIVTLHGLVSA  334 (336)
Q Consensus       290 v~~~~~l~~~~~~~~~~~~~~~~l~Vv~~~~~~iGiit~~di~~~  334 (336)
                      +.+++++.++++.|.++  +.+.+||+|++++++|+||++||++.
T Consensus       178 v~~~~sL~eAl~~m~~~--~~~~LPVVD~~g~LvGvITr~DIlk~  220 (505)
T PLN02274        178 APAGIDLEEAEAVLKDS--KKGKLPLVNEDGELVDLVTRTDVKRV  220 (505)
T ss_pred             ECCCCCHHHHHHHHHHc--CCCEEEEEcCCCeEEEEEEHHHHHHH
Confidence            99999999999999999  99999999988999999999999875

>TIGR01137 cysta_beta cystathionine beta-synthase

Probab=99.39  E-value=2.6e-12  Score=122.18  Aligned_cols=120  Identities=20%  Similarity=0.188  Sum_probs=100.7

Q ss_pred             hhhhhhhccccCCCCccccCCCcHHHHHHHHHhcCcceEEEEcCCCcEEEEeeHHHHHHHHHhcCCchhhhhHhhhcCCC
Q 019775          207 LIFKVQDVMKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRRTLKASGEGIFKLTVGEMCNRS  286 (336)
Q Consensus       207 ~~~~v~~im~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~it~~dl~~~~~~~~~~~~~~~i~~~~~~~  286 (336)
                      ..++++++|.++  +.++.+++++.++++.|.+.+++.+||+|++++++|+|+.+|+...+..... ....++.++|.++
T Consensus       333 ~~~~v~~im~~~--~~~v~~~~tl~ea~~~m~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~~~-~~~~~v~~im~~~  409 (454)
T TIGR01137       333 KNATVKDLHLPA--PVTVHPTETVGDAIEILREYGFDQLPVVTEAGKVLGSVTLRELLSALFAGKA-NPDDAVSKVMSKK  409 (454)
T ss_pred             ccCCHHHhCcCC--CeEECCCCcHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHHHHhccCC-CcCCCHHHhcCCC
Confidence            357899999887  5589999999999999998899999999988999999999999987654221 1235788999888


Q ss_pred             CeeeCCCccHHHHHHHhcCCCCCccEeEEEeCCCcEEEEEehhhHhhc
Q 019775          287 PRTIGPDAMAVEAMQKMESPPSPVQFLPVINRQNILIGIVTLHGLVSA  334 (336)
Q Consensus       287 ~~~v~~~~~l~~~~~~~~~~~~~~~~l~Vv~~~~~~iGiit~~di~~~  334 (336)
                      +.++.+++++.++++.|.++  +   .|||+++|+++|+||++||+++
T Consensus       410 ~~~v~~~~~l~~a~~~~~~~--~---~~vV~~~g~liGvvt~~dll~~  452 (454)
T TIGR01137       410 FIQIGEGEKLSDLSKFLEKN--S---SAIVTEEGKPIGVVTKIDLLSF  452 (454)
T ss_pred             CeEECCcCcHHHHHHHHHHC--C---eeEEEECCEEEEEEEHHHHHHh
Confidence            88999999999999999876  3   3455556999999999999875

Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven.

>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional

Probab=99.39  E-value=1.8e-12  Score=122.87  Aligned_cols=114  Identities=18%  Similarity=0.162  Sum_probs=99.2

Q ss_pred             hhhccccCCCCccccCCCcHHHHHHHHHhcCcceEEEEcCC---CcEEEEeeHHHHHHHHHhcCCchhhhhHhhhcCC--
Q 019775          211 VQDVMKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEE---YHLIGTFTDGDLRRTLKASGEGIFKLTVGEMCNR--  285 (336)
Q Consensus       211 v~~im~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~---~~~~G~it~~dl~~~~~~~~~~~~~~~i~~~~~~--  285 (336)
                      .++.|..++  ++++++.++.++.++|.+++++.+||+|++   ++++|+|+.+|++...   .   ...++.++|.+  
T Consensus        98 ~e~g~i~dp--vtv~pd~tv~eA~~lm~~~~~s~vpVvd~~~~~gkLvGIVt~~DL~~~~---~---~~~~V~diMt~~~  169 (495)
T PTZ00314         98 FENGFIMDP--YVLSPNHTVADVLEIKEKKGFSSILITVDGKVGGKLLGIVTSRDIDFVK---D---KSTPVSEVMTPRE  169 (495)
T ss_pred             cccccccCC--eecCCCCCHHHHHHHHHHcCCcEEEEEeCCccCCeEEEEEEHHHHhhcc---c---CCCCHHHhhCCcC
Confidence            345666664  489999999999999999999999999963   7999999999997321   1   24679999987  


Q ss_pred             CCeeeCCCccHHHHHHHhcCCCCCccEeEEEeCCCcEEEEEehhhHhhc
Q 019775          286 SPRTIGPDAMAVEAMQKMESPPSPVQFLPVINRQNILIGIVTLHGLVSA  334 (336)
Q Consensus       286 ~~~~v~~~~~l~~~~~~~~~~~~~~~~l~Vv~~~~~~iGiit~~di~~~  334 (336)
                      ++.++.+++++.++++.|.++  +.+.+||+|++++++|+||++||++.
T Consensus       170 ~lvtv~~~~sl~eAl~lm~e~--~i~~LPVVd~~g~liGIIT~~DIl~~  216 (495)
T PTZ00314        170 KLVVGNTPISLEEANEVLRES--RKGKLPIVNDNGELVALVSRSDLKKN  216 (495)
T ss_pred             CceEeCCCCCHHHHHHHHHHc--CCCeEEEEcCCCcEEEEEEehHhhhc
Confidence            778899999999999999999  99999999999999999999999975

>cd04634 CBS_pair_21 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.39  E-value=4.8e-12  Score=100.95  Aligned_cols=109  Identities=26%  Similarity=0.355  Sum_probs=93.6

Q ss_pred             CccccCCCcHHHHHHHHHhcCcceEEEEcCCCcEEEEeeHHHHHHHHHhcCC--c-------------------------
Q 019775          221 LPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRRTLKASGE--G-------------------------  273 (336)
Q Consensus       221 ~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~it~~dl~~~~~~~~~--~-------------------------  273 (336)
                      +++++++.++.++.+.|.+.+++.+||+|+ ++++|+++..++...+.....  .                         
T Consensus         3 ~~~v~~~~~~~~~~~~~~~~~~~~~~Vvd~-~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (143)
T cd04634           3 PITCNADDTISDAARLLRENKISGAPVLDG-GKLVGIVSESDILKLLVTHDPSGNLWLPSPLELIELPLREFINWEETKR   81 (143)
T ss_pred             cEEecCCCCHHHHHHHHHHcCCCcceEeEC-CeEEEEecHHHHHHHHHhccCccccccCCcceeeeccchheeehHHHHH
Confidence            457899999999999999999999999997 999999999999887643220  0                         


Q ss_pred             ----hhhhhHhhhcCCCCeeeCCCccHHHHHHHhcCCCCCccEeEEEeCCCcEEEEEehhhHhh
Q 019775          274 ----IFKLTVGEMCNRSPRTIGPDAMAVEAMQKMESPPSPVQFLPVINRQNILIGIVTLHGLVS  333 (336)
Q Consensus       274 ----~~~~~i~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~l~Vv~~~~~~iGiit~~di~~  333 (336)
                          ....++.++|.+++..+.+++++.++++.|.++  +...+||+++ |+++|+|++.|+++
T Consensus        82 ~~~~~~~~~v~~~~~~~~~~v~~~~~l~~a~~~~~~~--~~~~~~Vv~~-~~~~Gvvt~~dl~~  142 (143)
T cd04634          82 ALTDAGKMKVRDIMTKKVITISPDASIEDAAELMVRH--KIKRLPVVED-GRLVGIVTRGDIIE  142 (143)
T ss_pred             HHHHHhcCCHHHHcCCCCeEECCCCcHHHHHHHHHHc--CCCEEEEEEC-CEEEEEEEHHHhhc
Confidence                013467788888899999999999999999998  8889999998 99999999999975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04598 CBS_pair_GGDEF_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain

Probab=99.39  E-value=5.1e-12  Score=97.15  Aligned_cols=110  Identities=18%  Similarity=0.173  Sum_probs=90.4

Q ss_pred             CccccCCCcHHHHHHHHHhcC-cceEEEEcCCCcEEEEeeHHHHHHHHHhcC--CchhhhhHhhhcCCCCeeeCCCccHH
Q 019775          221 LPVCKEGDLIMDQLVELTSKG-CGCLLVIDEEYHLIGTFTDGDLRRTLKASG--EGIFKLTVGEMCNRSPRTIGPDAMAV  297 (336)
Q Consensus       221 ~~~~~~~~~v~~~~~~~~~~~-~~~ipVvd~~~~~~G~it~~dl~~~~~~~~--~~~~~~~i~~~~~~~~~~v~~~~~l~  297 (336)
                      ++++++++++.++.+.+...+ ++.+||+|+ |+++|+++.+++...+....  ......++.++|.+++..+.+++++.
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Vvd~-~~~~G~v~~~~l~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~~~   81 (119)
T cd04598           3 APTVSPDTTVNDVLERFERDPDLSALAVVDD-GRPVGLIMREALMELLSTPYGRALYGKKPVSEVMDPDPLIVEADTPLE   81 (119)
T ss_pred             cCccCCCCcHHHHHHHHHhCCCccEEEEEEC-CeeEEEEEHHHHHHHHhchhhHHHHcCCcHHHhcCCCcEEecCCCCHH
Confidence            458899999999999998776 889999998 99999999999986544211  00113568889999999999999999


Q ss_pred             HHHHHhcCCCCCcc---EeEEEeCCCcEEEEEehhhHhh
Q 019775          298 EAMQKMESPPSPVQ---FLPVINRQNILIGIVTLHGLVS  333 (336)
Q Consensus       298 ~~~~~~~~~~~~~~---~l~Vv~~~~~~iGiit~~di~~  333 (336)
                      ++++.|.++  +..   ..+|++++|+++|+|+..|+++
T Consensus        82 ~~~~~~~~~--~~~~~~~~~vv~~~~~~~Gvvs~~di~~  118 (119)
T cd04598          82 EVSRLATGR--DSQNLYDGFIVTEEGRYLGIGTVKDLLR  118 (119)
T ss_pred             HHHHHHHcC--CcccccccEEEeeCCeEEEEEEHHHHhc
Confidence            999999887  543   4468888899999999999975

The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04638 CBS_pair_25 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=99.38  E-value=6.3e-12  Score=94.65  Aligned_cols=103  Identities=25%  Similarity=0.317  Sum_probs=89.6

Q ss_pred             CccccCCCcHHHHHHHHHhcCcceEEEEcCCCcEEEEeeHHHHHHHHHhcCCchhhhhHhhhcCCCCeeeCCCccHHHHH
Q 019775          221 LPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRRTLKASGEGIFKLTVGEMCNRSPRTIGPDAMAVEAM  300 (336)
Q Consensus       221 ~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~it~~dl~~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~l~~~~  300 (336)
                      +.++.++.++.++...+.+.+++.+||++++++++|+++.+++....   .    ..++.++|..++.++.+++++.+++
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g~v~~~~l~~~~---~----~~~~~~~~~~~~~~v~~~~~l~~~~   75 (106)
T cd04638           3 VVYVTLPGTRDDVLELLKEYKVSGVPVVKKSGELVGIITRKDLLRNP---E----EEQLALLMTRDPPTVSPDDDVKEAA   75 (106)
T ss_pred             cEEECCCCCHHHHHHHHHHcCCCeEEEEcCCCcEEEEEEHHHHHhcc---c----cchHHHHhcCCCceECCCCCHHHHH
Confidence            45788889999999999988889999999889999999999997521   1    2457777888888999999999999


Q ss_pred             HHhcCCCCCccEeEEEeCCCcEEEEEehhhHhh
Q 019775          301 QKMESPPSPVQFLPVINRQNILIGIVTLHGLVS  333 (336)
Q Consensus       301 ~~~~~~~~~~~~l~Vv~~~~~~iGiit~~di~~  333 (336)
                      +.|.++  +.+.+||+++ |+++|+|+..|+++
T Consensus        76 ~~~~~~--~~~~~~Vvd~-~~~~G~it~~d~~~  105 (106)
T cd04638          76 KLMVEN--NIRRVPVVDD-GKLVGIVTVADIVR  105 (106)
T ss_pred             HHHHHc--CCCEEEEEEC-CEEEEEEEHHHhhc
Confidence            999998  8899999986 89999999999976

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd05015 SIS_PGI_1 Phosphoglucose isomerase (PGI) contains two SIS (Sugar ISomerase) domains

Probab=99.34  E-value=1.6e-11  Score=99.40  Aligned_cols=105  Identities=20%  Similarity=0.300  Sum_probs=83.8

Q ss_pred             hHHHHHHHHHHc---CCCeEEEEeccchHH---HHHHHHHHHHhcCCeeeecCC--ccccccccCCCC-CCcEEEEEeCC
Q 019775           41 PHTLTFTQTLLK---CRGTIFFTGVGKSGF---VANKISQTLISLGIKSGFLNP--LDALHGDIGILS-SDDILVMFSKS  111 (336)
Q Consensus        41 ~~i~~~~~~i~~---a~~~I~i~G~G~s~~---~a~~~~~~l~~~g~~~~~~~~--~~~~~~~~~~~~-~~dlvi~iS~s  111 (336)
                      +.++++++.+.+   . ++|+++|.|.|+.   ++.++..++.+.+.+++++..  .+.+......++ +++++|++|.|
T Consensus         5 ~~i~~~~~~i~~~~~~-~~iv~~GiGGS~lg~~~~~~~~~~~~~~~~~i~~~~~~D~~~~~~~~~~~~~~~tlvi~iSkS   83 (158)
T cd05015           5 ERIKEFAEKVRSGKKI-TDVVVIGIGGSDLGPRAVYEALKPYFKGGLRLHFVSNVDPDDLAELLKKLDPETTLFIVISKS   83 (158)
T ss_pred             HHHHHHHHHHhcCCCC-CEEEEEecCccHHHHHHHHHHHHhhccCCceEEEEeCCCHHHHHHHHHhCCcccEEEEEEECC
Confidence            567788888765   5 6999999999998   777777777666888766654  433333444454 89999999999


Q ss_pred             CCcHHHHHHHHHHHH---------cCCeEEEEeCCCCCccccccC
Q 019775          112 GNTEELLKVVPCAKA---------KGAYLVSVTSVEGNALAAVCD  147 (336)
Q Consensus       112 G~~~~~~~~~~~ak~---------~g~~vi~IT~~~~s~l~~~ad  147 (336)
                      |.|.|++..++.+++         .+.++|+||+ +++++.+.|+
T Consensus        84 G~T~Et~~~~~~a~~~l~~~~~~~~~~~~vaiT~-~~s~l~~~a~  127 (158)
T cd05015          84 GTTLETLANARLAREWLEEAGGDDLAKHFVAITD-NGSGLLKKAG  127 (158)
T ss_pred             cCCHHHHHHHHHHHHHHHHhccccccceEEEEcC-CChHHHHHcC
Confidence            999999999999999         8999999999 6778877565

This classification is based on the alignment of the first SIS domain. PGI is a multifunctional enzyme which as an intracellular dimer catalyzes the reversible isomerization of glucose 6-phosphate to fructose 6-phosphate. As an extracellular protein, PGI also has functions equivalent to neuroleukin (NLK), autocrine motility factor (AMF), and maturation factor (MF). Evidence suggests that PGI, NLK, AMF, and MF are closely related or identical. NLK is a neurotrophic growth factor that promotes regeneration and survival of neurons. The dimeric form of NLK has isomerase function, whereas its monomeric form carries out neurotrophic activity. AMF is a cytokine that stimulates cell migration and metastasis. MF mediates the differentiation of human myeloid leukemic HL-60 cells to terminal monocytic cells.

>PTZ00295 glucosamine-fructose-6-phosphate aminotransferase; Provisional

Probab=99.34  E-value=3e-11  Score=119.07  Aligned_cols=154  Identities=13%  Similarity=0.203  Sum_probs=123.6

Q ss_pred             HHHHHHHHhcCChhHHHHHHHHHHcCCCeEEEEeccchHHHHHHHHHHHHhcCC-eeeecCCccccccccCCCC--CCcE
Q 019775           28 QDHLNYFFQHLSLPHTLTFTQTLLKCRGTIFFTGVGKSGFVANKISQTLISLGI-KSGFLNPLDALHGDIGILS--SDDI  104 (336)
Q Consensus        28 ~~~l~~~~~~~~~~~i~~~~~~i~~a~~~I~i~G~G~s~~~a~~~~~~l~~~g~-~~~~~~~~~~~~~~~~~~~--~~dl  104 (336)
                      .+.++++.+.. .+.++++++.+.++ ++++++|.|.++.+|.+++.+|.+++. ++..++..+..+.....++  ++++
T Consensus       472 p~~~~~~l~~~-~~~~~~~a~~l~~a-~~i~~lGrG~~~~iA~E~ALKLkEi~~i~ae~~~~~E~~HGp~ali~~~~~~~  549 (640)
T PTZ00295        472 PTYIGMTLKSC-EEQCKRIAEKLKNA-KSMFILGKGLGYPIALEGALKIKEITYIHAEGFSGGALKHGPFALIDKEKNTP  549 (640)
T ss_pred             HHHHHHHHHHh-HHHHHHHHHHHhCC-CcEEEEECCCCHHHHHHHHHHHHHHhhhhhhhcChHHhhhhHHHHhcCCCCCe
Confidence            33444444332 36789999999999 699999999999999999999999976 7777777776766666677  7899


Q ss_pred             EEEEeCCCC-cHHHHHHHHHHHHcCCeEEEEeCCCCCccccccCEEEEcCCCcccCCCCCCChhHHHHHHHHHHHHHHHH
Q 019775          105 LVMFSKSGN-TEELLKVVPCAKAKGAYLVSVTSVEGNALAAVCDMNVHLPVERELCPFDLAPVTSTAIQMVFGDTVAIAM  183 (336)
Q Consensus       105 vi~iS~sG~-~~~~~~~~~~ak~~g~~vi~IT~~~~s~l~~~ad~~i~~~~~~~~~~~~~~~~~s~~~~~~l~d~l~~~~  183 (336)
                      +|+++.+|. ++.+.++++.++++|+++|+||++. +++.+.+|.++.++.. +        ..+.+....-+.+|...+
T Consensus       550 VI~i~~~~~~~~~~~~~~~~lk~rga~vi~It~~~-~~l~~~ad~~i~ip~~-~--------~l~p~~~~ip~Qllay~l  619 (640)
T PTZ00295        550 VILIILDDEHKELMINAAEQVKARGAYIIVITDDE-DLVKDFADEIILIPSN-G--------PLTALLAVIPLQLLAYEI  619 (640)
T ss_pred             EEEEEcCCccHHHHHHHHHHHHHcCCEEEEEecCC-ccccccCCeEEEeCCc-c--------cchHHHHHHHHHHHHHHH
Confidence            999999988 6889999999999999999999875 5688899999988864 2        123455567778888888


Q ss_pred             HhhcCCChHH
Q 019775          184 MGARNLTRDE  193 (336)
Q Consensus       184 ~~~~~~~~~~  193 (336)
                      ...++.+++.
T Consensus       620 a~~~G~dpD~  629 (640)
T PTZ00295        620 AILRGINPDK  629 (640)
T ss_pred             HHHcCCCCCC
Confidence            8888877655

>COG0517 FOG: CBS domain [General function prediction only]

Probab=99.33  E-value=2.7e-11  Score=92.67  Aligned_cols=107  Identities=29%  Similarity=0.490  Sum_probs=94.5

Q ss_pred             CccccCCCcHHHHHHHHHhcCcceEEEEcCCCcEEEEeeHHHHHHHHHhcCCchhhhhHhhhcCCCCeeeCCCccHHHHH
Q 019775          221 LPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRRTLKASGEGIFKLTVGEMCNRSPRTIGPDAMAVEAM  300 (336)
Q Consensus       221 ~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~it~~dl~~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~l~~~~  300 (336)
                      .+++.++.++.++...|.++++..+||++. ++++|++|..|+..........  ..++.++|.+++..+.++.++.++.
T Consensus         9 ~~~v~~~~~~~~a~~~m~~~~~~~~~v~~~-~~l~Giit~~di~~~~~~~~~~--~~~v~~v~~~~~~~~~~~~~~~~~~   85 (117)
T COG0517           9 VITVKPDTSVRDALLLMSENGVSAVPVVDD-GKLVGIITERDILRALAAGGKR--LLPVKEVMTKPVVTVDPDTPLEEAL   85 (117)
T ss_pred             CEEECCCCcHHHHHHHHHHcCCCEEEEeeC-CEEEEEEEHHHHHHHHhccCCc--cccHHHhccCCcEEECCCCCHHHHH
Confidence            568999999999999999999999999984 4799999999999988753321  1268999988889999999999999


Q ss_pred             HHhcC-CCCCccEeEEEeCCC-cEEEEEehhhHh
Q 019775          301 QKMES-PPSPVQFLPVINRQN-ILIGIVTLHGLV  332 (336)
Q Consensus       301 ~~~~~-~~~~~~~l~Vv~~~~-~~iGiit~~di~  332 (336)
                      +.|.+ +  +...+||+++++ +++|++|..|++
T Consensus        86 ~~m~~~~--~~~~lpVv~~~~~~lvGivt~~di~  117 (117)
T COG0517          86 ELMVERH--KIRRLPVVDDDGGKLVGIITLSDIL  117 (117)
T ss_pred             HHHHHHc--CcCeEEEEECCCCeEEEEEEHHHcC
Confidence            99999 8  899999999985 999999999974

>COG1253 TlyC Hemolysins and related proteins containing CBS domains [General function prediction only]

Probab=99.32  E-value=1.4e-11  Score=115.78  Aligned_cols=121  Identities=17%  Similarity=0.275  Sum_probs=103.7

Q ss_pred             hhhhhhccccCCCCccccCCCcHHHHHHHHHhcCcceEEEEc-CCCcEEEEeeHHHHHHHHHhcCCchhhhhHhhhcCCC
Q 019775          208 IFKVQDVMKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVID-EEYHLIGTFTDGDLRRTLKASGEGIFKLTVGEMCNRS  286 (336)
Q Consensus       208 ~~~v~~im~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ipVvd-~~~~~~G~it~~dl~~~~~~~~~~~~~~~i~~~~~~~  286 (336)
                      ..+|+++|.|...+.+++.+.+++++.+.+.+++++++||++ +.+.++|+++.+||+........   .......+ ++
T Consensus       205 ~~~v~eiMtPR~~i~~l~~~~~~~~~~~~~~~~~~SR~PV~~~~~D~iiGiv~~Kdll~~~~~~~~---~~~~~~~~-~~  280 (429)
T COG1253         205 DRTVREIMTPRTDIVALDLTDTVEELIELILESGHSRIPVYDGDLDNIIGIVHVKDLLRALLDGQS---DLDLRVLV-RP  280 (429)
T ss_pred             CcEeeeEeeecccEEEEcCCCCHHHHHHHHHhCCCCeeeEEcCCCCcEEEEEEHHHHHHHHhcCcc---ccchhhcc-cC
Confidence            458899999999899999999999999999999999999999 44689999999999998876321   01111222 37


Q ss_pred             CeeeCCCccHHHHHHHhcCCCCCccEeEEEeCCCcEEEEEehhhHhhc
Q 019775          287 PRTIGPDAMAVEAMQKMESPPSPVQFLPVINRQNILIGIVTLHGLVSA  334 (336)
Q Consensus       287 ~~~v~~~~~l~~~~~~~~~~~~~~~~l~Vv~~~~~~iGiit~~di~~~  334 (336)
                      |.+|+++.++.++++.|++.  +.+...|+|+.|...|+||..||+++
T Consensus       281 ~~~Vpet~~~~~lL~~~r~~--~~hmAiVvDEyG~~~GlVTleDIiEe  326 (429)
T COG1253         281 PLFVPETLSLSDLLEEFREE--RTHMAIVVDEYGGVEGLVTLEDIIEE  326 (429)
T ss_pred             CeEecCCCcHHHHHHHHHHh--CCeEEEEEEcCCCeEEEeEHHHHHHH
Confidence            88999999999999999999  89999999999999999999999864

>PRK14869 putative manganese-dependent inorganic pyrophosphatase; Provisional

Probab=99.28  E-value=3.8e-11  Score=116.63  Aligned_cols=125  Identities=17%  Similarity=0.180  Sum_probs=106.3

Q ss_pred             hhhhhhhhccccCCCCccccCCCcHHHHHHHHHhcCcceEEEEcCCCcEEEEeeHHHHHHHHHhcC--------------
Q 019775          206 SLIFKVQDVMKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRRTLKASG--------------  271 (336)
Q Consensus       206 ~~~~~v~~im~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~it~~dl~~~~~~~~--------------  271 (336)
                      ...++|+++|.+.  ++++++++++.++++.|.+++.+.+||+|++|+++|+|+..|+........              
T Consensus        65 ~~~~~V~dim~~~--~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~l~Givt~~di~~~~~~~~~~~~~~~~~~t~~~  142 (546)
T PRK14869         65 DVKPQVRDLEIDK--PVTVSPDTSLKEAWNLMDENNVKTLPVVDEEGKLLGLVSLSDLARAYMDILDPEILSKSPTSLEN  142 (546)
T ss_pred             ccCCcHHHhcCCC--CcEECCCCcHHHHHHHHHHcCCCEEEEEcCCCEEEEEEEHHHHHHHHHhhcchhhhhhcCCCHHH
Confidence            3356899999886  559999999999999999999999999998899999999999987543211              


Q ss_pred             ---------------------------------------------C----------------------------------
Q 019775          272 ---------------------------------------------E----------------------------------  272 (336)
Q Consensus       272 ---------------------------------------------~----------------------------------  272 (336)
                                                                   +                                  
T Consensus       143 i~~~L~~~~l~~~~~~~~~~~~~~v~a~~~~~~~~~~~~~~lvi~gdr~d~~~~ai~~~~~~lIlt~g~~~~~~v~~la~  222 (546)
T PRK14869        143 IIRTLDGEVLVGAEEDKVEEGKVVVAAMAPESLLERIEEGDIVIVGDREDIQLAAIEAGVRLLIITGGAPVSEDVLELAK  222 (546)
T ss_pred             HHHhcCcEEEecCcccccccccEEEEEcCHHHHHHhccCCCEEEEcCcHHHHHHHHHcCCCEEEECCCCCCCHHHHHHHH
Confidence                                                         0                                  


Q ss_pred             -------------------chhhhhHhhhcC-CCCeeeCCCccHHHHHHHhcCCCCCccEeEEEeCCCcEEEEEehhhHh
Q 019775          273 -------------------GIFKLTVGEMCN-RSPRTIGPDAMAVEAMQKMESPPSPVQFLPVINRQNILIGIVTLHGLV  332 (336)
Q Consensus       273 -------------------~~~~~~i~~~~~-~~~~~v~~~~~l~~~~~~~~~~~~~~~~l~Vv~~~~~~iGiit~~di~  332 (336)
                                         .....++.++|. +++.++++++++.++.+.|.++  +.+.+||+|++|+++|+||+.|++
T Consensus       223 ~~~i~ii~t~~dt~~t~~~l~~~~~V~~iM~~~~~~~~~~~~~~~~~~~~m~~~--~~~~~PVvd~~g~lvGiit~~dl~  300 (546)
T PRK14869        223 ENGVTVISTPYDTFTTARLINQSIPVSYIMTTEDLVTFSKDDYLEDVKEVMLKS--RYRSYPVVDEDGKVVGVISRYHLL  300 (546)
T ss_pred             hCCCeEEEecccHHHHHHHhhcCCCHHHhccCCCcEEECCCCcHHHHHHHHHhc--CCCceEEEcCCCCEEEEEEHHHhh
Confidence                               001246788998 7889999999999999999998  899999999889999999999998


Q ss_pred             hc
Q 019775          333 SA  334 (336)
Q Consensus       333 ~~  334 (336)
                      +.
T Consensus       301 ~~  302 (546)
T PRK14869        301 SP  302 (546)
T ss_pred             cc
Confidence            64

>COG2103 Predicted sugar phosphate isomerase [General function prediction only]

Probab=99.26  E-value=2.2e-10  Score=96.21  Aligned_cols=184  Identities=15%  Similarity=0.168  Sum_probs=128.0

Q ss_pred             cccCCCCcchHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHcCCCeEEEEeccchHHHHHHHHHHHH-hcCCeee--
Q 019775            8 LDLLPHKVSENTLLDLFKSQQDHLNYFFQHLSLPHTLTFTQTLLKCRGTIFFTGVGKSGFVANKISQTLI-SLGIKSG--   84 (336)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~i~~a~~~I~i~G~G~s~~~a~~~~~~l~-~~g~~~~--   84 (336)
                      +|.+...+.-..+++--.....++++..-++. ..++.+++.+.+- .|.+..|.|+|.-++..=+..+- -+|.+..  
T Consensus        16 lD~l~t~e~l~~~n~ed~~v~~AV~~alp~Ia-~Av~~~~~~l~~G-GRLiY~GAGTSGRLGvlDAsEcPPTfgv~~e~V   93 (298)
T COG2103          16 LDQLSTLEMLRLINDEDQKVPLAVEAALPQIA-AAVDIIAAALKQG-GRLIYIGAGTSGRLGVLDASECPPTFGVPPELV   93 (298)
T ss_pred             ccccCHHHHHHHHhhhhhHHHHHHHHHhHHHH-HHHHHHHHHHHcC-CeEEEEcCCcccchhccchhhCCCCcCCChhHe
Confidence            44444444444444433344444444444443 5667777777787 59999999999966554333322 1122211  


Q ss_pred             --ecCCccc-----------------cccccCCCCCCcEEEEEeCCCCcHHHHHHHHHHHHcCCeEEEEeCCCCCccccc
Q 019775           85 --FLNPLDA-----------------LHGDIGILSSDDILVMFSKSGNTEELLKVVPCAKAKGAYLVSVTSVEGNALAAV  145 (336)
Q Consensus        85 --~~~~~~~-----------------~~~~~~~~~~~dlvi~iS~sG~~~~~~~~~~~ak~~g~~vi~IT~~~~s~l~~~  145 (336)
                        ++-.+..                 .......++++|++|.|+.||.|+-++-.+++|+++|+.+|+|++|++++++..
T Consensus        94 iglIAGG~~A~~~avEGaED~~~~g~~dl~~~~lt~~DvvvgIaASGrTPYvigal~yAr~~Ga~Ti~iacNp~s~i~~~  173 (298)
T COG2103          94 IGLIAGGEEAILKAVEGAEDDEELGEADLKNIGLTAKDVVVGIAASGRTPYVIGALEYARQRGATTIGIACNPGSAISRI  173 (298)
T ss_pred             eeeecCCHHHHHHhhcCccccHHHHHHHHHHcCCCcCCEEEEEecCCCCchhhHHHHHHHhcCCeEEEeecCCCchhhhh
Confidence              1111110                 011122489999999999999999999999999999999999999999999999


Q ss_pred             cCEEEEcCCCcccCCCCCCChhHHHHHHHHHHHHHHHHHhhcCCChHHH
Q 019775          146 CDMNVHLPVERELCPFDLAPVTSTAIQMVFGDTVAIAMMGARNLTRDEY  194 (336)
Q Consensus       146 ad~~i~~~~~~~~~~~~~~~~~s~~~~~~l~d~l~~~~~~~~~~~~~~~  194 (336)
                      +|+.|..-++.| ...+.+.+.+-++|-+++++|-...+-+.+..++.+
T Consensus       174 Ad~~I~~~vGPE-vltGSTRlKaGTAQKlvLNMlST~~Mi~lGKvy~Nl  221 (298)
T COG2103         174 ADIAIEPVVGPE-VLTGSTRLKAGTAQKLVLNMLSTGVMIKLGKVYGNL  221 (298)
T ss_pred             cCcceeeccCcc-ccccccccccchHHHHHHHHHHHHHHHHhcccccce
Confidence            999999888766 344557889999999999999999998887555443

>COG4536 CorB Putative Mg2+ and Co2+ transporter CorB [Inorganic ion transport and metabolism]

Probab=99.24  E-value=2.7e-11  Score=106.55  Aligned_cols=123  Identities=17%  Similarity=0.227  Sum_probs=108.4

Q ss_pred             hhhhhhccccCCCCccccCCCcHHHHHHHHHhcCcceEEEEcCC-CcEEEEeeHHHHHHHHHhcCCchhhhhHhhhcCCC
Q 019775          208 IFKVQDVMKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEE-YHLIGTFTDGDLRRTLKASGEGIFKLTVGEMCNRS  286 (336)
Q Consensus       208 ~~~v~~im~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~-~~~~G~it~~dl~~~~~~~~~~~~~~~i~~~~~~~  286 (336)
                      .++|+|+|.|..++..++.+++.+++++.+.+..+..+|+..++ ..++|+++.+++++++.+... ..+..+.... .+
T Consensus       199 ~~tV~DIMvpR~~i~~id~d~~~e~iv~ql~~s~HtRiplyr~~~DnIiGvlh~r~llr~l~e~~~-~~k~d~~~~a-~e  276 (423)
T COG4536         199 NLTVSDIMVPRNEIIGIDIDDPWEEIVRQLLHSPHTRIPLYRDDLDNIIGVLHVRDLLRLLNEKNE-FTKEDILRAA-DE  276 (423)
T ss_pred             cceeeeeeccccceeeecCCCCHHHHHHHHhhCCCCceeeecCChhHhhhhhhHHHHHHHhhccCc-ccHhHHHHHh-cC
Confidence            78999999999998899999999999999999999999999865 469999999999999987553 3344454443 56


Q ss_pred             CeeeCCCccHHHHHHHhcCCCCCccEeEEEeCCCcEEEEEehhhHhhc
Q 019775          287 PRTIGPDAMAVEAMQKMESPPSPVQFLPVINRQNILIGIVTLHGLVSA  334 (336)
Q Consensus       287 ~~~v~~~~~l~~~~~~~~~~~~~~~~l~Vv~~~~~~iGiit~~di~~~  334 (336)
                      |.+|++++++.+-+..|+++  +.+...|||+.|.+.|+||..||+..
T Consensus       277 pyFVPe~Tpl~~QL~~F~~~--k~hialVVDEYG~i~GLVTLEDIlEE  322 (423)
T COG4536         277 PYFVPEGTPLSDQLVAFQRN--KKHIALVVDEYGDIQGLVTLEDILEE  322 (423)
T ss_pred             CeecCCCCcHHHHHHHHHHh--cceEEEEEeccCcEEeeeeHHHHHHH
Confidence            88999999999999999999  89999999999999999999999864

>COG2239 MgtE Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism]

Probab=99.22  E-value=4.6e-11  Score=110.79  Aligned_cols=115  Identities=19%  Similarity=0.244  Sum_probs=102.9

Q ss_pred             hhhhhhccccCCCCccccCCCcHHHHHHHHHhc-----CcceEEEEcCCCcEEEEeeHHHHHHHHHhcCCchhhhhHhhh
Q 019775          208 IFKVQDVMKPQKELPVCKEGDLIMDQLVELTSK-----GCGCLLVIDEEYHLIGTFTDGDLRRTLKASGEGIFKLTVGEM  282 (336)
Q Consensus       208 ~~~v~~im~~~~~~~~~~~~~~v~~~~~~~~~~-----~~~~ipVvd~~~~~~G~it~~dl~~~~~~~~~~~~~~~i~~~  282 (336)
                      .-+++.+|.+.  ++.++++.|+.+++..+++.     ....++|+|+++++.|+++.++|+..-       ...++.++
T Consensus       131 e~taG~~Mt~e--~v~l~~~~Tv~~al~~ir~~~~~~e~~~~lyVvD~~~~L~Gvvsl~~Ll~a~-------~~~~i~~i  201 (451)
T COG2239         131 EDTAGRIMTTE--FVTLPEDVTVDEALDRIRERAEDAETIYYLYVVDEKGKLLGVVSLRDLLTAE-------PDELLKDL  201 (451)
T ss_pred             hhhhhccceee--eEEeccCcCHHHHHHHHHHhcccccccceEEEECCccceEEEeeHHHHhcCC-------cHhHHHHH
Confidence            44788889998  66999999999999999854     357889999999999999999988532       16889999


Q ss_pred             cCCCCeeeCCCccHHHHHHHhcCCCCCccEeEEEeCCCcEEEEEehhhHhh
Q 019775          283 CNRSPRTIGPDAMAVEAMQKMESPPSPVQFLPVINRQNILIGIVTLHGLVS  333 (336)
Q Consensus       283 ~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~l~Vv~~~~~~iGiit~~di~~  333 (336)
                      |.+.+..+.++++.+++.+.|+++  +.-.+||||++++++|+||..|++.
T Consensus       202 m~~~~~~V~~~~dqeevA~~~~~y--dl~a~PVVd~~~~LiG~itiDDiid  250 (451)
T COG2239         202 MEDDVVSVLADDDQEEVARLFEKY--DLLAVPVVDEDNRLIGIITIDDIID  250 (451)
T ss_pred             hcccceeecccCCHHHHHHHHHHh--CCeecceECCCCceeeeeeHHHHHH
Confidence            999999999999999999999999  9999999999999999999999875

>cd04592 CBS_pair_EriC_assoc_euk This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes

Probab=99.20  E-value=1.5e-10  Score=90.97  Aligned_cols=97  Identities=26%  Similarity=0.329  Sum_probs=78.9

Q ss_pred             CccccCCCcHHHHHHHHHhcCcceEEEEcCCCcEEEEeeHHHHHHHHHhcCCch----------hhhhHhhhc-------
Q 019775          221 LPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRRTLKASGEGI----------FKLTVGEMC-------  283 (336)
Q Consensus       221 ~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~it~~dl~~~~~~~~~~~----------~~~~i~~~~-------  283 (336)
                      ++++++++++.++++.|..++...+||+|++|+++|+++.+|++..+.......          ....+.++|       
T Consensus         3 ~~~v~~~~~l~ea~~~m~~~~~~~~~VvD~~g~l~Givt~~Dl~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~   82 (133)
T cd04592           3 YIKVSPTTTLKEALNLMLDEKQSCVLVVDSDDFLEGILTLGDIQRFLFTNKTTRVQPEDETKQTNTCLVSSVCTKGISYG   82 (133)
T ss_pred             ceEECCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEEHHHHHHHHhhccccccccchhhcccccccHHHHhhhhhhhc
Confidence            568999999999999999889999999998899999999999998775432210          001133444       


Q ss_pred             --CCCCeeeCCCccHHHHHHHhcCCCCCccEeEEEeCC
Q 019775          284 --NRSPRTIGPDAMAVEAMQKMESPPSPVQFLPVINRQ  319 (336)
Q Consensus       284 --~~~~~~v~~~~~l~~~~~~~~~~~~~~~~l~Vv~~~  319 (336)
                        .+++.++.+++++.++++.|.++  +.+.+||+++.
T Consensus        83 ~~~~~~~~v~~~~~l~ea~~~m~~~--~~~~lPVvd~~  118 (133)
T cd04592          83 GQECGLWTCTPDTDLTTAKKLMEAK--GVKQLPVVKRG  118 (133)
T ss_pred             ccCCCCEEECCCCCHHHHHHHHHHc--CCCcCCEecCC
Confidence              45678899999999999999999  99999999753

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually

>COG4535 CorC Putative Mg2+ and Co2+ transporter CorC [Inorganic ion transport and metabolism]

Probab=99.14  E-value=3.2e-10  Score=93.63  Aligned_cols=152  Identities=16%  Similarity=0.246  Sum_probs=119.4

Q ss_pred             HHHHHHHHHhhcCCChHHHh----hcCCCCchhhh-----------hhhhhhhccccCCCCccccCCCcHHHHHHHHHhc
Q 019775          176 GDTVAIAMMGARNLTRDEYA----ANHPAGRIGKS-----------LIFKVQDVMKPQKELPVCKEGDLIMDQLVELTSK  240 (336)
Q Consensus       176 ~d~l~~~~~~~~~~~~~~~~----~~~~~~~~~~~-----------~~~~v~~im~~~~~~~~~~~~~~v~~~~~~~~~~  240 (336)
                      ++.|...++.-...+++++.    ..+.+.-+...           ..+.|+++|.|.....+++.+.++.+++..+.+.
T Consensus        19 fe~L~~~~f~gEpknr~eLl~liRdse~n~LiD~dt~~mlEGvm~iadl~vrDiMIPRSQM~~l~~~~~l~~~l~~iies   98 (293)
T COG4535          19 FERLLSQLFHGEPKNREELLELIRDSEQNELIDADTLDMLEGVMDIADLRVRDIMIPRSQMITLKRNQTLDECLDVIIES   98 (293)
T ss_pred             HHHHHHHHhcCCCcCHHHHHHHHHHhhhccccChhHHHHHHHHHHHHHhhHhhhcccHHHheeccccCCHHHHHHHHHHh
Confidence            44455555555556666643    33333333321           2568999999999888999999999999999999


Q ss_pred             CcceEEEEcCC-CcEEEEeeHHHHHHHHHhcCCchhhhhHhhhcCCCCeeeCCCccHHHHHHHhcCCCCCccEeEEEeCC
Q 019775          241 GCGCLLVIDEE-YHLIGTFTDGDLRRTLKASGEGIFKLTVGEMCNRSPRTIGPDAMAVEAMQKMESPPSPVQFLPVINRQ  319 (336)
Q Consensus       241 ~~~~ipVvd~~-~~~~G~it~~dl~~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~l~Vv~~~  319 (336)
                      .++.+||+.++ ..+.|++..+||+.++.+...   .-.+.+++ ++..+|+++-.+.-.++.|+.+  +..-.+|+|+-
T Consensus        99 aHSRfPVi~edkD~v~GIL~AKDLL~~~~~~~~---~F~i~~lL-RPav~VPESKrvd~lLkeFR~~--RnHMAIViDEf  172 (293)
T COG4535          99 AHSRFPVISEDKDHVEGILLAKDLLPFMRSDAE---PFDIKELL-RPAVVVPESKRVDRLLKEFRSQ--RNHMAIVIDEF  172 (293)
T ss_pred             ccccCCcccCCchhhhhhhhHHHHHHHhcCCcc---cccHHHhc-ccceecccchhHHHHHHHHHhh--cCceEEEEecc
Confidence            99999999855 589999999999998865322   23455554 5567899999999999999999  88899999999


Q ss_pred             CcEEEEEehhhHhh
Q 019775          320 NILIGIVTLHGLVS  333 (336)
Q Consensus       320 ~~~iGiit~~di~~  333 (336)
                      |.+-|+||..||+.
T Consensus       173 GgVsGLVTIEDiLE  186 (293)
T COG4535         173 GGVSGLVTIEDILE  186 (293)
T ss_pred             CCeeeeEEHHHHHH
Confidence            99999999999985

>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional

Probab=99.09  E-value=3.9e-09  Score=97.73  Aligned_cols=188  Identities=14%  Similarity=0.169  Sum_probs=125.3

Q ss_pred             HHHHHHHHHHHH-cCCeEEEEeCCCCCccccccCEEEEcCCCcccCCCCCCChhHHHHHHHHHHHHHHHHHhhc-CCChH
Q 019775          115 EELLKVVPCAKA-KGAYLVSVTSVEGNALAAVCDMNVHLPVERELCPFDLAPVTSTAIQMVFGDTVAIAMMGAR-NLTRD  192 (336)
Q Consensus       115 ~~~~~~~~~ak~-~g~~vi~IT~~~~s~l~~~ad~~i~~~~~~~~~~~~~~~~~s~~~~~~l~d~l~~~~~~~~-~~~~~  192 (336)
                      ..+.+.++..++ .|..+|.+|.. ...+.++||.++.+..+.-. ..  ....         +     +.... +.-..
T Consensus       201 ~~l~~~L~~l~~~~g~TIIivTHd-~~~~~~~~Dri~vL~~G~i~-~~--g~~~---------~-----l~~~~~~~~v~  262 (400)
T PRK10070        201 TEMQDELVKLQAKHQRTIVFISHD-LDEAMRIGDRIAIMQNGEVV-QV--GTPD---------E-----ILNNPANDYVR  262 (400)
T ss_pred             HHHHHHHHHHHHHCCCeEEEEECC-HHHHHHhCCEEEEEECCEEE-ec--CCHH---------H-----HHhCcccHHHH
Confidence            345556666544 57777777764 45667889999888655321 00  1100         0     01110 00011


Q ss_pred             HHhhcCCCCchhhhhhhhhhhccccCCC-CccccCCCcHHHHHHHHHhcCcceEEEEcCCCcEEEEeeHHHHHHHHHhcC
Q 019775          193 EYAANHPAGRIGKSLIFKVQDVMKPQKE-LPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRRTLKASG  271 (336)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~v~~im~~~~~-~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~it~~dl~~~~~~~~  271 (336)
                      .+....     ......++.++|.+... .+...++.+..+++..|...+.+.++|+|+++++.|+++.+++......  
T Consensus       263 ~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~--  335 (400)
T PRK10070        263 TFFRGV-----DISQVFSAKDIARRTPNGLIRKTPGFGPRSALKLLQDEDREYGYVIERGNKFVGAVSIDSLKTALTQ--  335 (400)
T ss_pred             HHHhcc-----ccccccchhhhhhcCcccccccCCCCCHHHHHHHHHhcCCceEEEEcCCCcEEEEEeHHHHHhhhhc--
Confidence            122111     11112355666654321 1234567789999999999999999999999999999999999876542  


Q ss_pred             CchhhhhHhhhcCCCCeeeCCCccHHHHHHHhcCCCCCccEeEEEeCCCcEEEEEehhhHhhc
Q 019775          272 EGIFKLTVGEMCNRSPRTIGPDAMAVEAMQKMESPPSPVQFLPVINRQNILIGIVTLHGLVSA  334 (336)
Q Consensus       272 ~~~~~~~i~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~l~Vv~~~~~~iGiit~~di~~~  334 (336)
                          ...+.+.+.+...++.+++++.+++..+.+.  ... +||+|++|+++|+|++.+++++
T Consensus       336 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-~~v~~~~~~~~g~~~~~~~~~~  391 (400)
T PRK10070        336 ----QQGLDAALIDAPLAVDAQTPLSELLSHVGQA--PCA-VPVVDEDQQYVGIISKGMLLRA  391 (400)
T ss_pred             ----CCchhhhhccCCceeCCCCCHHHHHHHHHhC--CCc-EEEECCCCcEEEEEEHHHHHHH
Confidence                2245556667778999999999999999987  555 9999999999999999999864

>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit

Probab=99.01  E-value=2.2e-08  Score=91.73  Aligned_cols=103  Identities=19%  Similarity=0.289  Sum_probs=88.7

Q ss_pred             cccCCCcHHHHHHHHHhcCcceEEEEcCCCcEEEEeeHHHHHHHHHhcCCchhhhhHhhhcCCCCeeeCCCccHHHHHHH
Q 019775          223 VCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRRTLKASGEGIFKLTVGEMCNRSPRTIGPDAMAVEAMQK  302 (336)
Q Consensus       223 ~~~~~~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~it~~dl~~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~l~~~~~~  302 (336)
                      ...++.+..++...+...+.+..+|+|+++++.|.++.+++......      ...+.+.+.+....+.+++++.+++..
T Consensus       254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~  327 (363)
T TIGR01186       254 TKTADKGPRSALQLMRDERVDSLYVVDRQNKLVGVVDVESIKQARKK------AQGLQDVLIDDIYTVDAGTLLRETVRK  327 (363)
T ss_pred             eecCCCCHHHHHHHHHhcCCceEEEEcCCCCEEEEEeHHHHHHHhhc------CCchhhhhccCCceECCCCcHHHHHHH
Confidence            45667789999999999999999999999999999999999876653      234666666777889999999999999


Q ss_pred             hcCCCCCccEeEEEeCCCcEEEEEehhhHhhc
Q 019775          303 MESPPSPVQFLPVINRQNILIGIVTLHGLVSA  334 (336)
Q Consensus       303 ~~~~~~~~~~l~Vv~~~~~~iGiit~~di~~~  334 (336)
                      |.++  +.. +||+|++|+++|+|++.+++++
T Consensus       328 ~~~~--~~~-~~v~~~~~~~~g~i~~~~~~~~  356 (363)
T TIGR01186       328 VLKA--GIK-VPVVDEDQRLVGIVTRGSLVDA  356 (363)
T ss_pred             HHhC--CCC-EEEECCCCcEEEEEEHHHHHHH
Confidence            9998  666 9999999999999999999864

This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact

>PF00571 CBS: CBS domain CBS domain web page

Probab=98.99  E-value=1.9e-09  Score=71.41  Aligned_cols=56  Identities=29%  Similarity=0.433  Sum_probs=51.9

Q ss_pred             hhhccccCCCCccccCCCcHHHHHHHHHhcCcceEEEEcCCCcEEEEeeHHHHHHHHH
Q 019775          211 VQDVMKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRRTLK  268 (336)
Q Consensus       211 v~~im~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~it~~dl~~~~~  268 (336)
                      |+++|.++  ++++++++++.++++.|.+++++++||+|++|+++|+++.+||++.+.
T Consensus         1 v~~~m~~~--~~~v~~~~~l~~~~~~~~~~~~~~~~V~d~~~~~~G~is~~dl~~~l~   56 (57)
T PF00571_consen    1 VGDIMTPP--PITVSPDDSLEEALEIMRKNGISRLPVVDEDGKLVGIISRSDLLKALL   56 (57)
T ss_dssp             HHHHSBSS--SEEEETTSBHHHHHHHHHHHTSSEEEEESTTSBEEEEEEHHHHHHHHH
T ss_pred             CeECCcCC--CEEEcCcCcHHHHHHHHHHcCCcEEEEEecCCEEEEEEEHHHHHhhhh
Confidence            57899986  669999999999999999999999999999999999999999998764

Mutations in the CBS domain of Swiss:P35520 lead to homocystinuria.; InterPro: IPR000644 CBS (cystathionine-beta-synthase) domains are small intracellular modules, mostly found in two or four copies within a protein, that occur in a variety of proteins in bacteria, archaea, and eukaryotes [, ]. Tandem pairs of CBS domains can act as binding domains for adenosine derivatives and may regulate the activity of attached enzymatic or other domains []. In some cases, CBS domains may act as sensors of cellular energy status by being activated by AMP and inhibited by ATP []. In chloride ion channels, the CBS domains have been implicated in intracellular targeting and trafficking, as well as in protein-protein interactions, but results vary with different channels: in the CLC-5 channel, the CBS domain was shown to be required for trafficking [], while in the CLC-1 channel, the CBS domain was shown to be critical for channel function, but not necessary for trafficking []. Recent experiments revealing that CBS domains can bind adenosine-containing ligands such ATP, AMP, or S-adenosylmethionine have led to the hypothesis that CBS domains function as sensors of intracellular metabolites [, ]. Crystallographic studies of CBS domains have shown that pairs of CBS sequences form a globular domain where each CBS unit adopts a beta-alpha-beta-beta-alpha pattern []. Crystal structure of the CBS domains of the AMP-activated protein kinase in complexes with AMP and ATP shows that the phosphate groups of AMP/ATP lie in a surface pocket at the interface of two CBS domains, which is lined with basic residues, many of which are associated with disease-causing mutations []. In humans, mutations in conserved residues within CBS domains cause a variety of human hereditary diseases, including (with the gene mutated in parentheses): homocystinuria (cystathionine beta-synthase); Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase); retinitis pigmentosa (IMP dehydrogenase-1); congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members).; GO: 0005515 protein binding; PDB: 3JTF_A 3TE5_C 3TDH_C 3T4N_C 2QLV_C 3OI8_A 3LV9_A 2QH1_B 1PVM_B 3LQN_A ....

>PF00571 CBS: CBS domain CBS domain web page

Probab=98.90  E-value=2.5e-09  Score=70.79  Aligned_cols=54  Identities=31%  Similarity=0.568  Sum_probs=50.7

Q ss_pred             HhhhcCCCCeeeCCCccHHHHHHHhcCCCCCccEeEEEeCCCcEEEEEehhhHhhc
Q 019775          279 VGEMCNRSPRTIGPDAMAVEAMQKMESPPSPVQFLPVINRQNILIGIVTLHGLVSA  334 (336)
Q Consensus       279 i~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~l~Vv~~~~~~iGiit~~di~~~  334 (336)
                      +.++|.+++..+.+++++.++++.|.++  +.+.+||+|++|+++|+||..||+++
T Consensus         1 v~~~m~~~~~~v~~~~~l~~~~~~~~~~--~~~~~~V~d~~~~~~G~is~~dl~~~   54 (57)
T PF00571_consen    1 VGDIMTPPPITVSPDDSLEEALEIMRKN--GISRLPVVDEDGKLVGIISRSDLLKA   54 (57)
T ss_dssp             HHHHSBSSSEEEETTSBHHHHHHHHHHH--TSSEEEEESTTSBEEEEEEHHHHHHH
T ss_pred             CeECCcCCCEEEcCcCcHHHHHHHHHHc--CCcEEEEEecCCEEEEEEEHHHHHhh
Confidence            4678999999999999999999999999  99999999999999999999999874

Mutations in the CBS domain of Swiss:P35520 lead to homocystinuria.; InterPro: IPR000644 CBS (cystathionine-beta-synthase) domains are small intracellular modules, mostly found in two or four copies within a protein, that occur in a variety of proteins in bacteria, archaea, and eukaryotes [, ]. Tandem pairs of CBS domains can act as binding domains for adenosine derivatives and may regulate the activity of attached enzymatic or other domains []. In some cases, CBS domains may act as sensors of cellular energy status by being activated by AMP and inhibited by ATP []. In chloride ion channels, the CBS domains have been implicated in intracellular targeting and trafficking, as well as in protein-protein interactions, but results vary with different channels: in the CLC-5 channel, the CBS domain was shown to be required for trafficking [], while in the CLC-1 channel, the CBS domain was shown to be critical for channel function, but not necessary for trafficking []. Recent experiments revealing that CBS domains can bind adenosine-containing ligands such ATP, AMP, or S-adenosylmethionine have led to the hypothesis that CBS domains function as sensors of intracellular metabolites [, ]. Crystallographic studies of CBS domains have shown that pairs of CBS sequences form a globular domain where each CBS unit adopts a beta-alpha-beta-beta-alpha pattern []. Crystal structure of the CBS domains of the AMP-activated protein kinase in complexes with AMP and ATP shows that the phosphate groups of AMP/ATP lie in a surface pocket at the interface of two CBS domains, which is lined with basic residues, many of which are associated with disease-causing mutations []. In humans, mutations in conserved residues within CBS domains cause a variety of human hereditary diseases, including (with the gene mutated in parentheses): homocystinuria (cystathionine beta-synthase); Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase); retinitis pigmentosa (IMP dehydrogenase-1); congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members).; GO: 0005515 protein binding; PDB: 3JTF_A 3TE5_C 3TDH_C 3T4N_C 2QLV_C 3OI8_A 3LV9_A 2QH1_B 1PVM_B 3LQN_A ....

>KOG0474 consensus Cl- channel CLC-7 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]

Probab=98.85  E-value=6.9e-09  Score=96.92  Aligned_cols=123  Identities=20%  Similarity=0.163  Sum_probs=104.5

Q ss_pred             hhhhhhccccCCCCccccCCCcHHHHHHHHHhcCcceEEEEcCC-----CcEEEEeeHHHHHHHHHhcCC----------
Q 019775          208 IFKVQDVMKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEE-----YHLIGTFTDGDLRRTLKASGE----------  272 (336)
Q Consensus       208 ~~~v~~im~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~-----~~~~G~it~~dl~~~~~~~~~----------  272 (336)
                      .++++++|.++  +++++....++.+++.+++.++..+||+|+.     +++.|+|-+++|...+..+..          
T Consensus       581 ~L~a~ev~~~p--vi~l~~~ekV~~Iv~vLk~t~HngFPVvd~~~~~~~~~l~GlILRshl~vlL~~~~f~~~~~~~~~~  658 (762)
T KOG0474|consen  581 NLTAGEVMSKP--VICLNRVEKVAVIVDVLKSTNHNGFPVVDEPPSNEAGRLHGLILRSHLLVLLKKRVFVEESRSTFDL  658 (762)
T ss_pred             hhhHhhhccCC--eEEEechhhHHHHHHHHHhcCcCCCccccCCCCccchhhhHHHHHHHHHHHHHhhhhhccCccccCc
Confidence            56899999995  7799999999999999999999999999943     478999999999876643210          


Q ss_pred             ---------------------------chhhhhHhhhcCCCCeeeCCCccHHHHHHHhcCCCCCccEeEEEeCCCcEEEE
Q 019775          273 ---------------------------GIFKLTVGEMCNRSPRTIGPDAMAVEAMQKMESPPSPVQFLPVINRQNILIGI  325 (336)
Q Consensus       273 ---------------------------~~~~~~i~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~l~Vv~~~~~~iGi  325 (336)
                                                 ......+..+|++.|.+|.+++++..+...|+.-  +++++.|+++.+..+|+
T Consensus       659 ~~~~~~~~~d~a~r~~~i~dv~lt~~e~~~yvDl~p~~n~sPytV~~~mSl~k~~~lFR~l--GLRhLlVv~~~~~~~gi  736 (762)
T KOG0474|consen  659 PVRRKFTFRDFAKREPSIEDVHLTSEEMEMYVDLHPFMNPSPYTVPETMSLAKAFILFRQL--GLRHLLVVPKTNRVVGI  736 (762)
T ss_pred             chhhcCCHHHhhhcCCchhhhhcchHhHhhccccccccCCCCcccCcccchHHHHHHHHHh--cceeEEEecCCCceeEE
Confidence                                       0011355568899999999999999999999999  99999999998889999


Q ss_pred             EehhhHhhc
Q 019775          326 VTLHGLVSA  334 (336)
Q Consensus       326 it~~di~~~  334 (336)
                      +|++|+.+.
T Consensus       737 lTR~D~~~~  745 (762)
T KOG0474|consen  737 LTRKDLARY  745 (762)
T ss_pred             EehhhhhhH
Confidence            999999753

>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]

Probab=98.84  E-value=6.8e-09  Score=92.35  Aligned_cols=104  Identities=17%  Similarity=0.221  Sum_probs=93.8

Q ss_pred             cccCCCcHHHHHHHHHhcCcceEEEEcCC---CcEEEEeeHHHHHHHHHhcCCchhhhhHhhhcCCCCeeeCCCccHHHH
Q 019775          223 VCKEGDLIMDQLVELTSKGCGCLLVIDEE---YHLIGTFTDGDLRRTLKASGEGIFKLTVGEMCNRSPRTIGPDAMAVEA  299 (336)
Q Consensus       223 ~~~~~~~v~~~~~~~~~~~~~~ipVvd~~---~~~~G~it~~dl~~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~l~~~  299 (336)
                      ++.|+.++.++++....++++.+||.++.   ++++|+||.+|+.....      ....+.++|.+.+...+.+.++.++
T Consensus       120 v~sp~~tvg~v~~~k~~~gF~g~pvTe~g~~~~KLvG~vtsrdi~f~~~------~~~~~~~vmt~~~~~~~~gi~l~~~  193 (503)
T KOG2550|consen  120 VISPTTTVGEVKEAKEKHGFSGIPVTEDGKRGSKLVGIITSRDIQFLED------NSLLVSDVMTKNPVTGAQGITLKEA  193 (503)
T ss_pred             ccCCcccchhhhhhcccccccccccccCCcccceeEEEEehhhhhhhhc------ccchhhhhcccccccccccccHHHH
Confidence            78999999999999999999999999733   58999999999876521      2578899999999999999999999


Q ss_pred             HHHhcCCCCCccEeEEEeCCCcEEEEEehhhHhhc
Q 019775          300 MQKMESPPSPVQFLPVINRQNILIGIVTLHGLVSA  334 (336)
Q Consensus       300 ~~~~~~~~~~~~~l~Vv~~~~~~iGiit~~di~~~  334 (336)
                      -+.+++.  +...+||+|++|+++.+|++.||.++
T Consensus       194 neiL~~~--kkGkl~iv~~~gelva~~~rtDl~k~  226 (503)
T KOG2550|consen  194 NEILKKI--KKGKLPVVDDKGELVAMLSRTDLMKN  226 (503)
T ss_pred             HHHHHhh--hcCCcceeccCCceeeeeehhhhhhh
Confidence            9999999  89999999999999999999999875

>KOG1764 consensus 5'-AMP-activated protein kinase, gamma subunit [Energy production and conversion]

Probab=98.84  E-value=3e-08  Score=91.09  Aligned_cols=112  Identities=19%  Similarity=0.315  Sum_probs=94.2

Q ss_pred             CccccCCCcHHHHHHHHHhcCcceEEEEcCCCcEEEEeeHHHHHHHHHhcCCchhhhh-Hhhhc------CCCCeeeCCC
Q 019775          221 LPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRRTLKASGEGIFKLT-VGEMC------NRSPRTIGPD  293 (336)
Q Consensus       221 ~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~it~~dl~~~~~~~~~~~~~~~-i~~~~------~~~~~~v~~~  293 (336)
                      +..+..+.++.++++.|...+++.+||++..|+.+|.++..|+.....+......+.. +....      ..+..++.++
T Consensus       239 i~~i~~~~~v~~al~~m~~~~is~lpvV~~~g~~v~~~s~~Dv~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~vvtc~~~  318 (381)
T KOG1764|consen  239 IASISEDTPVIEALKIMSERRISALPVVDENGKKVGNYSRFDVIHLAREGTYNNLDLSCLSEALSHRPIRFEGVVTCRPT  318 (381)
T ss_pred             heeecCCCcHHHHHHHHHhcCcCcceEEcCCCceecceehhhhhhhhhcCccCccchhHHHHHhhhcccccCccEEEeec
Confidence            6688999999999999999999999999999988999999999998766443333333 32221      2234789999


Q ss_pred             ccHHHHHHHhcCCCCCccEeEEEeCCCcEEEEEehhhHhhc
Q 019775          294 AMAVEAMQKMESPPSPVQFLPVINRQNILIGIVTLHGLVSA  334 (336)
Q Consensus       294 ~~l~~~~~~~~~~~~~~~~l~Vv~~~~~~iGiit~~di~~~  334 (336)
                      .++..+++.|..+  +++++.|+|++|.++|+||..|++..
T Consensus       319 ssL~~vi~~lv~~--~vHRl~VVd~~~~l~GvvSLsDil~~  357 (381)
T KOG1764|consen  319 STLAEVIDKLVAH--RVHRLWVVDEDGVLVGVISLSDILSY  357 (381)
T ss_pred             chHHHHHHHHHhc--CceEEEEEcCCCcEEEEeeHHHHHHH
Confidence            9999999999999  99999999999999999999999864

>PTZ00394 glucosamine-fructose-6-phosphate aminotransferase; Provisional

Probab=98.76  E-value=2.8e-07  Score=91.12  Aligned_cols=144  Identities=15%  Similarity=0.130  Sum_probs=115.3

Q ss_pred             hHHHHHHHHHHcCCCeEEEEeccchHHHHHHHHHHHHhc-CCeeeecCCccccccccCCCCCCcEEEEEeCCCCc-HHHH
Q 019775           41 PHTLTFTQTLLKCRGTIFFTGVGKSGFVANKISQTLISL-GIKSGFLNPLDALHGDIGILSSDDILVMFSKSGNT-EELL  118 (336)
Q Consensus        41 ~~i~~~~~~i~~a~~~I~i~G~G~s~~~a~~~~~~l~~~-g~~~~~~~~~~~~~~~~~~~~~~dlvi~iS~sG~~-~~~~  118 (336)
                      +.++++++.+.++ +++|++|.|.++.+|.+.+.+|.++ .+++..++..+..+.....++++..+|++...+.+ ..+.
T Consensus       514 ~~~~~~a~~l~~~-~~~~~lGrG~~y~~A~EgALKlkE~syi~ae~y~~~EfkHGP~alid~~~pVi~l~~~~~~~e~~~  592 (670)
T PTZ00394        514 DPVKALAARLKES-SSILVLGRGYDLATAMEAALKVKELSYVHTEGIHSGELKHGPLALIDETSPVLAMCTHDKHFGLSK  592 (670)
T ss_pred             HHHHHHHHHhhCC-CcEEEEeCCCCHHHHHHHHHHHHHHHHHHhCcCChhhccCCcHHHhcCCceEEEEEcCCchHHHHH
Confidence            5678888888888 6999999999999999999999987 77777777788888888889999888888876665 5688


Q ss_pred             HHHHHHHHcCCeEEEEeCCCCCccccccCEEEEcCCCcccCCCCCCChhHHHHHHHHHHHHHHHHHhhcCCChHH
Q 019775          119 KVVPCAKAKGAYLVSVTSVEGNALAAVCDMNVHLPVERELCPFDLAPVTSTAIQMVFGDTVAIAMMGARNLTRDE  193 (336)
Q Consensus       119 ~~~~~ak~~g~~vi~IT~~~~s~l~~~ad~~i~~~~~~~~~~~~~~~~~s~~~~~~l~d~l~~~~~~~~~~~~~~  193 (336)
                      ++++.++++|+++++||+.....+...++.++.+|...+        ..+.+.....+.+|...++..++.++++
T Consensus       593 ~~~~evk~~g~~vi~I~~~~~~~~~~~~~~~i~vp~~~~--------~l~pll~~iplQllAy~~A~~rG~dpD~  659 (670)
T PTZ00394        593 SAVQQVKARGGAVVVFATEVDAELKAAASEIVLVPKTVD--------CLQCVVNVIPFQLLAYYMALLRGNNVDC  659 (670)
T ss_pred             HHHHHHHHcCCeEEEEECCCcchhcccCCcEEECCCCch--------hHhHHHHHHHHHHHHHHHHHHcCCCCCC
Confidence            899999999999999998654455566778888886432        2233445566788888899888877655

>COG0449 GlmS Glucosamine 6-phosphate synthetase, contains amidotransferase and phosphosugar isomerase domains [Cell envelope biogenesis, outer membrane]

Probab=98.66  E-value=1e-06  Score=83.82  Aligned_cols=158  Identities=15%  Similarity=0.176  Sum_probs=127.9

Q ss_pred             HHHHHHHHHHHHHhcCChhHHHHHHHHHHcCCCeEEEEeccchHHHHHHHHHHHHhc-CCeeeecCCccccccccCCCCC
Q 019775           23 LFKSQQDHLNYFFQHLSLPHTLTFTQTLLKCRGTIFFTGVGKSGFVANKISQTLISL-GIKSGFLNPLDALHGDIGILSS  101 (336)
Q Consensus        23 ~~~~~~~~l~~~~~~~~~~~i~~~~~~i~~a~~~I~i~G~G~s~~~a~~~~~~l~~~-g~~~~~~~~~~~~~~~~~~~~~  101 (336)
                      -++...+.++++..  ..+.+.++++.+.++ +++|++|.|..+++|.+.+.+|..+ .+++.-+..++..+..+..+++
T Consensus       427 ~L~~lp~~i~~~l~--~~~~i~~~a~~l~~~-~~~~~lGRG~~ypvAlEgALKlKEIsYIHAEgy~aGElKHGpiALid~  503 (597)
T COG0449         427 ELQKLPNHIPKVLA--AEEKIKELAKRLADA-KDFFFLGRGVLYPVALEGALKLKEISYIHAEGYAAGELKHGPIALIDE  503 (597)
T ss_pred             HHHHHHHHHHHHHh--cCHHHHHHHHHhccc-CCEEEEcCCCCcHhHhhhhhhhhhheeeccccccchhhccCceEEEcC
Confidence            34555566666665  447899999998888 6999999999999999999999988 7777777778888999999999


Q ss_pred             CcEEEEEeCCCC-cHHHHHHHHHHHHcCCeEEEEeCCCCCccccccCEEEEcCCCcccCCCCCCChhHHHHHHHHHHHHH
Q 019775          102 DDILVMFSKSGN-TEELLKVVPCAKAKGAYLVSVTSVEGNALAAVCDMNVHLPVERELCPFDLAPVTSTAIQMVFGDTVA  180 (336)
Q Consensus       102 ~dlvi~iS~sG~-~~~~~~~~~~ak~~g~~vi~IT~~~~s~l~~~ad~~i~~~~~~~~~~~~~~~~~s~~~~~~l~d~l~  180 (336)
                      +..+|++.-.+. ...+...++..+.||++++.|++...  .....|..+..|...+        ..+.+....-+++|.
T Consensus       504 ~~pVi~i~p~~~~~ek~~sni~Ev~aRg~~~i~i~~~~~--~~~~~~~~i~~p~~~e--------~laPi~~~iPlQLLA  573 (597)
T COG0449         504 NTPVIAIAPKPDLFEKTKSNIQEVRARGGKIIVIADEGD--VAEDGDDLILLPEVDE--------LLAPLLYTIPLQLLA  573 (597)
T ss_pred             CCcEEEEeCcchHHHHHHHHHHHHHcCCCeEEEEecCCc--ccccCceEEecCCCcc--------hhhhHHHHHHHHHHH
Confidence            999999999995 68899999999999999999998766  5566788888777654        123334445578888


Q ss_pred             HHHHhhcCCChHH
Q 019775          181 IAMMGARNLTRDE  193 (336)
Q Consensus       181 ~~~~~~~~~~~~~  193 (336)
                      +.++..++.+.++
T Consensus       574 Y~iA~~kG~dvD~  586 (597)
T COG0449         574 YHIALAKGIDVDK  586 (597)
T ss_pred             HHHHHHcCCCCCC
Confidence            8888888876654

>TIGR01135 glmS glucosamine--fructose-6-phosphate aminotransferase (isomerizing)

Probab=98.63  E-value=1.5e-06  Score=85.78  Aligned_cols=156  Identities=17%  Similarity=0.146  Sum_probs=119.7

Q ss_pred             HHHHHHHHHhcCChhHHHHHHHHHHcCCCeEEEEeccchHHHHHHHHHHHHhc-CCeeeecCCccccccccCCCCCCcEE
Q 019775           27 QQDHLNYFFQHLSLPHTLTFTQTLLKCRGTIFFTGVGKSGFVANKISQTLISL-GIKSGFLNPLDALHGDIGILSSDDIL  105 (336)
Q Consensus        27 ~~~~l~~~~~~~~~~~i~~~~~~i~~a~~~I~i~G~G~s~~~a~~~~~~l~~~-g~~~~~~~~~~~~~~~~~~~~~~dlv  105 (336)
                      ..+.+++..+.  .+.+++.++.+.+. +++|++|.|..+.+|.+.+.+|.++ .+++..+...+..+.....++++..+
T Consensus       439 l~~~~~~~~~~--~~~~~~~a~~l~~~-~~~~~lG~G~~~g~A~E~aLKl~E~~~~~a~~~~~~Ef~HGP~~~i~~~~~v  515 (607)
T TIGR01135       439 LPALVEQVLKL--EESIAELAERYADK-HNFLFLGRGLGYPIALEGALKLKEISYIHAEGYPAGELKHGPIALIDEGLPV  515 (607)
T ss_pred             HHHHHHHHHhC--cHHHHHHHHHhhCC-CcEEEEeCCCCHHHHHHHHHHHHHHHHHhccccchhhhccCcHhhhCCCCCE
Confidence            33444444443  25678888888888 5999999999999999999999988 67888787788888888889999999


Q ss_pred             EEEeCCCCc-HHHHHHHHHHHHcCCeEEEEeCCCCCccccccCEEEEcCCCcccCCCCCCChhHHHHHHHHHHHHHHHHH
Q 019775          106 VMFSKSGNT-EELLKVVPCAKAKGAYLVSVTSVEGNALAAVCDMNVHLPVERELCPFDLAPVTSTAIQMVFGDTVAIAMM  184 (336)
Q Consensus       106 i~iS~sG~~-~~~~~~~~~ak~~g~~vi~IT~~~~s~l~~~ad~~i~~~~~~~~~~~~~~~~~s~~~~~~l~d~l~~~~~  184 (336)
                      |++...+.. ..+.++++.++++|+++++|++.........+|..+.+|...+        ..+.+.....+++|...+.
T Consensus       516 i~l~~~~~~~~~~~~~~~~~~~~g~~v~~I~~~~~~~~~~~~~~~i~~p~~~~--------~l~pl~~~~p~Qlla~~~A  587 (607)
T TIGR01135       516 VAIAPKDSLFEKTKSNVEEVKARGARVIVFADEDDEFLESVADDVIKLPEVEE--------LLAPIVYTVPLQLLAYHIA  587 (607)
T ss_pred             EEEEeCchHHHHHHHHHHHHHHcCCeEEEEECCCcccccccCCcEEECCCCCc--------cchHHHHHHHHHHHHHHHH
Confidence            999877764 6678899999999999999998643222345677787775422        2234455777899999999


Q ss_pred             hhcCCChHH
Q 019775          185 GARNLTRDE  193 (336)
Q Consensus       185 ~~~~~~~~~  193 (336)
                      ..++.+++.
T Consensus       588 ~~~G~dpd~  596 (607)
T TIGR01135       588 LAKGTDVDK  596 (607)
T ss_pred             HHcCCCCCC
Confidence            998877655

The member from Methanococcus jannaschii contains an intein.

>PRK00331 glucosamine--fructose-6-phosphate aminotransferase; Reviewed

Probab=98.60  E-value=2.7e-06  Score=83.94  Aligned_cols=155  Identities=16%  Similarity=0.154  Sum_probs=118.5

Q ss_pred             HHHHHHHHHhcCChhHHHHHHHHHHcCCCeEEEEeccchHHHHHHHHHHHHhc-CCeeeecCCccccccccCCCCCCcEE
Q 019775           27 QQDHLNYFFQHLSLPHTLTFTQTLLKCRGTIFFTGVGKSGFVANKISQTLISL-GIKSGFLNPLDALHGDIGILSSDDIL  105 (336)
Q Consensus        27 ~~~~l~~~~~~~~~~~i~~~~~~i~~a~~~I~i~G~G~s~~~a~~~~~~l~~~-g~~~~~~~~~~~~~~~~~~~~~~dlv  105 (336)
                      ..+.+....+.  .+.++++++.+... +++|++|.|.++.+|.+.+.+|.++ .+++..+...+..+.....++++..+
T Consensus       437 l~~~~~~~~~~--~~~~~~~a~~~~~~-~~~~~lG~G~~~~~A~E~aLKl~E~~~i~a~~~~~~Ef~HGP~~~i~~~~~v  513 (604)
T PRK00331        437 LPALIEQVLDL--KEQIEELAEDFADA-RNALFLGRGVDYPVALEGALKLKEISYIHAEGYAAGELKHGPIALIDEGMPV  513 (604)
T ss_pred             HHHHHHHHHhC--hHHHHHHHHHHhCC-CcEEEEeCCCCHHHHHHHHHHHHHHhhhcccccchhhhccCcHhhhcCCceE
Confidence            33444444443  35678888888888 5999999999999999999999988 77888887788888888888999999


Q ss_pred             EEEeCCCCc-HHHHHHHHHHHHcCCeEEEEeCCCCCccccccCEEEEcCCCcccCCCCCCChhHHHHHHHHHHHHHHHHH
Q 019775          106 VMFSKSGNT-EELLKVVPCAKAKGAYLVSVTSVEGNALAAVCDMNVHLPVERELCPFDLAPVTSTAIQMVFGDTVAIAMM  184 (336)
Q Consensus       106 i~iS~sG~~-~~~~~~~~~ak~~g~~vi~IT~~~~s~l~~~ad~~i~~~~~~~~~~~~~~~~~s~~~~~~l~d~l~~~~~  184 (336)
                      |++...+.. ..+.+.++..+++|+++++||+... .....+|..+.+|...+        ..+.+.....++++...+.
T Consensus       514 i~l~~~~~~~~~~~~~~~~~~~~g~~v~~I~~~~~-~~~~~~~~~~~~~~~~~--------~~~pl~~~ip~Qlla~~~A  584 (604)
T PRK00331        514 VAIAPNDELYEKTKSNIQEVKARGARVIVIADEGD-EVAEEADDVIEVPEVHE--------LLAPLLYVVPLQLLAYHVA  584 (604)
T ss_pred             EEEEcCchHHHHHHHHHHHHHhCCCEEEEEEcCCc-cccccCCceEECCCCcc--------chhHHHHHHHHHHHHHHHH
Confidence            988877764 4567889999999999999997543 33455677777775322        2234444567889999999


Q ss_pred             hhcCCChHH
Q 019775          185 GARNLTRDE  193 (336)
Q Consensus       185 ~~~~~~~~~  193 (336)
                      ..++.+++.
T Consensus       585 ~~~G~~pd~  593 (604)
T PRK00331        585 LARGTDVDK  593 (604)
T ss_pred             HHcCCCCCC
Confidence            998877655

>PF10740 DUF2529: Protein of unknown function (DUF2529); InterPro: IPR019676 This entry represents a protein family conserved in the Bacillales

Probab=98.50  E-value=6.2e-06  Score=65.67  Aligned_cols=158  Identities=16%  Similarity=0.210  Sum_probs=81.3

Q ss_pred             HHHHHHHHHHHHHhcCChhHHHHHHHHHHcC---CCeEEEEeccchHHHHHHHHHHHHhcCCeeeecCCccccccccCCC
Q 019775           23 LFKSQQDHLNYFFQHLSLPHTLTFTQTLLKC---RGTIFFTGVGKSGFVANKISQTLISLGIKSGFLNPLDALHGDIGIL   99 (336)
Q Consensus        23 ~~~~~~~~l~~~~~~~~~~~i~~~~~~i~~a---~~~I~i~G~G~s~~~a~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~   99 (336)
                      ++..++.-+-+-...-.++.|+..++++.+|   .++||++|+|-=..+..+..+.=..+..-..+..+..    ....+
T Consensus         4 IftTQL~Gif~rI~ekee~~iedaARlLAQA~vgeG~IYi~G~~Em~~v~~~Al~g~E~l~~~k~l~~~~~----~~~~l   79 (172)
T PF10740_consen    4 IFTTQLTGIFKRISEKEEESIEDAARLLAQAIVGEGTIYIYGFGEMEAVEAEALYGAEPLPSAKRLSEDLE----NFDEL   79 (172)
T ss_dssp             HHHHHHHHHHHHH-HCCHHHHHHHHHHHHHHHHTT--EEEEE-GGGGGGHHHHHCSTT--TTEEE--TT-----------
T ss_pred             HHHHHHHHHHHHHhhhhHhhHHHHHHHHHHHHhcCCEEEEEecChHHHHHHHHHcCCCCCchhhcCccccc----ccccc
Confidence            3444444443333333567899999998766   2699999998755443332211111111111111111    12347


Q ss_pred             CCCcEEEEEeCCCCcHHHHHHHHHHHHcCCeEEEEe--CCCCCccccccCEEEEcCCCcccCCC---CCCChhHHHHHHH
Q 019775          100 SSDDILVMFSKSGNTEELLKVVPCAKAKGAYLVSVT--SVEGNALAAVCDMNVHLPVERELCPF---DLAPVTSTAIQMV  174 (336)
Q Consensus       100 ~~~dlvi~iS~sG~~~~~~~~~~~ak~~g~~vi~IT--~~~~s~l~~~ad~~i~~~~~~~~~~~---~~~~~~s~~~~~~  174 (336)
                      ++-|=|++||..-+.++.++.++.+.++|+++++|+  ......+.++||+.|......+..|.   ....+.+.++.+|
T Consensus        80 t~~DRVllfs~~~~~~e~~~~a~~L~~~gi~~v~Vs~~~~~~~~l~~~~~~~Idl~~~~~LvP~EdG~Rig~P~~~a~ly  159 (172)
T PF10740_consen   80 TETDRVLLFSPFSTDEEAVALAKQLIEQGIPFVGVSPNKPDEEDLEDLADVHIDLKLPKPLVPTEDGDRIGFPHLMAALY  159 (172)
T ss_dssp             -TT-EEEEEES-S--HHHHHHHHHHHHHT--EEEEE-SS---TTGGG-SSS-EE----S-SEE-TTS-EE---HHHHHHH
T ss_pred             cccceEEEEeCCCCCHHHHHHHHHHHHCCCCEEEEEecCCCCCchhhhhhheeecccCCCcccCCCCCEecchHHHHHHH
Confidence            788999999999999999999999999999999999  33455788889999987766543322   2234566677777


Q ss_pred             HHHHHHHHHH
Q 019775          175 FGDTVAIAMM  184 (336)
Q Consensus       175 l~d~l~~~~~  184 (336)
                      +...|+..+.
T Consensus       160 iYy~l~~~~~  169 (172)
T PF10740_consen  160 IYYALYFTLD  169 (172)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            7777666553

Their function is not known. ; PDB: 3JX9_A.

>PLN02981 glucosamine:fructose-6-phosphate aminotransferase

Probab=98.43  E-value=1e-05  Score=80.44  Aligned_cols=154  Identities=11%  Similarity=0.100  Sum_probs=115.3

Q ss_pred             HHHHHHHhcCChhHHHHHHHHHHcCCCeEEEEeccchHHHHHHHHHHHHhc-CCeeeecCCccccccccCCCCCCcEEEE
Q 019775           29 DHLNYFFQHLSLPHTLTFTQTLLKCRGTIFFTGVGKSGFVANKISQTLISL-GIKSGFLNPLDALHGDIGILSSDDILVM  107 (336)
Q Consensus        29 ~~l~~~~~~~~~~~i~~~~~~i~~a~~~I~i~G~G~s~~~a~~~~~~l~~~-g~~~~~~~~~~~~~~~~~~~~~~dlvi~  107 (336)
                      +.+++..+.  .+.++++++.+.++ +++|++|.|..+.+|.+.+.+|.++ .+++..+...+..+.....++++..+|+
T Consensus       512 ~~l~~vl~~--~~~~~~~a~~l~~~-~~~~~lG~G~~yg~A~EgALKlkE~s~i~a~gy~~~Ef~HGP~ali~~~t~vi~  588 (680)
T PLN02981        512 NKVREVLKL--DQEMKELAELLIDE-QSLLVFGRGYNYATALEGALKVKEVALMHSEGILAGEMKHGPLALVDETLPIIV  588 (680)
T ss_pred             HHHHHHHhc--cHHHHHHHHHhhCC-CcEEEEeCCCCHHHHHHHHHHHHHHHHhhhccEEhhhcccChHHhccCCceEEE
Confidence            344444442  25688888888888 5999999999999999999999987 6777777777888888888999999888


Q ss_pred             EeCCCC-cHHHHHHHHHHHHcCCeEEEEeCCCCCcc--ccccCEEEEcCCCcccCCCCCCChhHHHHHHHHHHHHHHHHH
Q 019775          108 FSKSGN-TEELLKVVPCAKAKGAYLVSVTSVEGNAL--AAVCDMNVHLPVERELCPFDLAPVTSTAIQMVFGDTVAIAMM  184 (336)
Q Consensus       108 iS~sG~-~~~~~~~~~~ak~~g~~vi~IT~~~~s~l--~~~ad~~i~~~~~~~~~~~~~~~~~s~~~~~~l~d~l~~~~~  184 (336)
                      +...+. .....++++.++++|+++++|++......  ....|..+.+|...+        ..+.+.....+++|...+.
T Consensus       589 l~~~~~~~~~~~~~~~el~~~g~~vi~I~~~~~~~~~~~~~~~~~i~~p~~~~--------~l~pll~iiplQllAy~~A  660 (680)
T PLN02981        589 IATRDACFSKQQSVIQQLRARKGRLIVICSKGDASSVCPSGGCRVIEVPQVED--------CLQPVINIVPLQLLAYHLT  660 (680)
T ss_pred             EEcCCchHHHHHHHHHHHHHcCCEEEEEEcCCcchhccccCCCeEEEEeccch--------HHhHHHHHHHHHHHHHHHH
Confidence            876665 46688999999999999999998643211  123466676765322        2233444566788888888


Q ss_pred             hhcCCChHH
Q 019775          185 GARNLTRDE  193 (336)
Q Consensus       185 ~~~~~~~~~  193 (336)
                      ..++.+++.
T Consensus       661 ~~~G~dpD~  669 (680)
T PLN02981        661 VLRGHNVDQ  669 (680)
T ss_pred             HHhCCCCCC
Confidence            888876654

>cd05010 SIS_AgaS_like AgaS-like protein

Probab=98.41  E-value=5.6e-06  Score=66.30  Aligned_cols=129  Identities=15%  Similarity=0.212  Sum_probs=94.1

Q ss_pred             EEEEeccchHHHHHHHHHHHHhcC---CeeeecCCccccccccCCCCCCcEEEEEeCCCCcHH--HHHHHHHHHHc--CC
Q 019775           57 IFFTGVGKSGFVANKISQTLISLG---IKSGFLNPLDALHGDIGILSSDDILVMFSKSGNTEE--LLKVVPCAKAK--GA  129 (336)
Q Consensus        57 I~i~G~G~s~~~a~~~~~~l~~~g---~~~~~~~~~~~~~~~~~~~~~~dlvi~iS~sG~~~~--~~~~~~~ak~~--g~  129 (336)
                      |+++|.|.++.+|.+.+.+|+++-   .++...+..+..+.....++++..+|++...+.+.+  ..++++..+++  |+
T Consensus         1 ~~~lGrG~~y~~A~E~ALKlkE~s~~~~~ae~~s~~Ef~HGP~alv~~~~~vi~l~~~d~~~~~~~~~~~~ei~~~~~g~   80 (151)
T cd05010           1 VVYLGSGPLAGLAREAALKVLELTAGKVATVYDSPLGFRHGPKSLVDDDTLVVVFVSNDPYTRQYDLDLLKELRRDGIAA   80 (151)
T ss_pred             CEEEecCCcHHHHHHHHHHHHHHhccchhhccccccccccCcHHHccCCceEEEEEcCCchHHHHHHHHHHHHHhccCCC
Confidence            689999999999999999999973   477777778888888888999999999987777643  56889999998  89


Q ss_pred             eEEEEeCCCCCccccccCEEEE-cCCCcccCCCCCCChhHHHHHHHHHHHHHHHHHhhcCCChHH
Q 019775          130 YLVSVTSVEGNALAAVCDMNVH-LPVERELCPFDLAPVTSTAIQMVFGDTVAIAMMGARNLTRDE  193 (336)
Q Consensus       130 ~vi~IT~~~~s~l~~~ad~~i~-~~~~~~~~~~~~~~~~s~~~~~~l~d~l~~~~~~~~~~~~~~  193 (336)
                      ++++|+..........+++.+. .+..        ....+.+.....+.++...++..++.+++.
T Consensus        81 ~vi~i~~~~~~~~~~~~~~~l~~~~~~--------~~~l~p~~~iip~Qlla~~~A~~~G~dpD~  137 (151)
T cd05010          81 RVIAISPESDAGIEDNSHYYLPGSRDL--------DDVYLAFPYILYAQLFALFNSIALGLTPDN  137 (151)
T ss_pred             eEEEEEcCCccccccccceeecccCCc--------ccHHHHHHHHHHHHHHHHHHHHHcCCCCCC
Confidence            9999987532222223343222 2222        222344455666788888888888877654

AgaS contains a SIS (Sugar ISomerase) domain which is found in many phosphosugar isomerases and phosphosugar binding proteins. AgaS is a putative isomerase in Escherichia coli. It is similar to the glucosamine-6-phosphate synthases (GlmS) which catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source.

>PRK11382 frlB fructoselysine-6-P-deglycase; Provisional

Probab=98.34  E-value=1.9e-05  Score=72.25  Aligned_cols=132  Identities=11%  Similarity=0.118  Sum_probs=101.7

Q ss_pred             hHHHHHHHHHHcCCCeEEEEeccchHHHH-HHHHHHHHhc-CCeeeecCCccccccccCCCCCCcEEEEEeCCCCc-HHH
Q 019775           41 PHTLTFTQTLLKCRGTIFFTGVGKSGFVA-NKISQTLISL-GIKSGFLNPLDALHGDIGILSSDDILVMFSKSGNT-EEL  117 (336)
Q Consensus        41 ~~i~~~~~~i~~a~~~I~i~G~G~s~~~a-~~~~~~l~~~-g~~~~~~~~~~~~~~~~~~~~~~dlvi~iS~sG~~-~~~  117 (336)
                      +..+++++.+... +++|++|.|.++..| .+.+.+|.++ .+++..++..+..+.....++++..+|++..+|.+ ...
T Consensus       196 ~~~~~~a~~~~~~-~~~~~lG~G~~y~~A~~E~alKl~E~~~i~a~~~~~~Ef~HGP~~li~~~~~vi~l~~~~~~~~~~  274 (340)
T PRK11382        196 EKGRQLGELASQW-PMIYTVAAGPLRPLGYKEGIVTLMEFTWTHGCVIESGEFRHGPLEIVEPGVPFLFLLGNDESRHTT  274 (340)
T ss_pred             HHHHHHHHHhcCC-CcEEEEeCCCCHHHHHHHHHHHHHHHhhhhcccccHHHhccChHHHhcCCceEEEEEcCcchHHHH
Confidence            4456666766677 599999999999997 8989999986 78888888888888888889999988888878866 468


Q ss_pred             HHHHHHHHHcCCeEEEEeCCCCCccccccCEEEEcCCCcccCCCCCCChhHHHHHHHHHHHHHHHHHhhcCCChHH
Q 019775          118 LKVVPCAKAKGAYLVSVTSVEGNALAAVCDMNVHLPVERELCPFDLAPVTSTAIQMVFGDTVAIAMMGARNLTRDE  193 (336)
Q Consensus       118 ~~~~~~ak~~g~~vi~IT~~~~s~l~~~ad~~i~~~~~~~~~~~~~~~~~s~~~~~~l~d~l~~~~~~~~~~~~~~  193 (336)
                      .++++.++++|.++++|+...             ++.       ......+.+.....++++...+...++.++++
T Consensus       275 ~~~~~~l~~~~~~v~~I~~~~-------------~~~-------~~~~~l~pl~~~ip~Qlla~~lA~~rG~d~d~  330 (340)
T PRK11382        275 ERAINFVKQRTDNVIVIDYAE-------------ISQ-------GLHPWLAPFLMFVPMEWLCYYLSIYKDHNPDE  330 (340)
T ss_pred             HHHHHHHHHCCCeEEEEECCC-------------CCC-------CcchhHhHHHHHHHHHHHHHHHHHHhCcCCCC
Confidence            889999999999999997531             111       11223344455566788999999988877655

>COG2524 Predicted transcriptional regulator, contains C-terminal CBS domains [Transcription]

Probab=98.34  E-value=9.2e-07  Score=74.46  Aligned_cols=61  Identities=26%  Similarity=0.342  Sum_probs=56.6

Q ss_pred             hhhhhhhhccccCCCCccccCCCcHHHHHHHHHhcCcceEEEEcCCCcEEEEeeHHHHHHHHH
Q 019775          206 SLIFKVQDVMKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRRTLK  268 (336)
Q Consensus       206 ~~~~~v~~im~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~it~~dl~~~~~  268 (336)
                      .+..+|+++|+++  +++++.|..+.||+++|.++++..+.|+|.+|+++|+||+.|++..+.
T Consensus       231 ~~~~kV~~~M~k~--vitI~eDe~i~dAir~M~~~nVGRLlV~ds~gkpvGiITrTDIL~~ia  291 (294)
T COG2524         231 NLDAKVSDYMRKN--VITINEDEDIYDAIRLMNKNNVGRLLVTDSNGKPVGIITRTDILTRIA  291 (294)
T ss_pred             CccccHHHHhccC--CceEcCchhHHHHHHHHHhcCcceEEEEccCCcEEEEEehHHHHHHhh
Confidence            3567999999998  669999999999999999999999999999999999999999998764

>TIGR00400 mgtE Mg2+ transporter (mgtE)

Probab=98.30  E-value=8.9e-07  Score=83.89  Aligned_cols=96  Identities=13%  Similarity=0.102  Sum_probs=78.3

Q ss_pred             hhhhccccCCCCccccCCCcHHHHHHHHHhcCcceEEEEcCCCcEEEEeeHHHHHHHHHhcCCchhhhhHhhhcCCCCee
Q 019775          210 KVQDVMKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRRTLKASGEGIFKLTVGEMCNRSPRT  289 (336)
Q Consensus       210 ~v~~im~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~it~~dl~~~~~~~~~~~~~~~i~~~~~~~~~~  289 (336)
                      +++++|++.  ++++++++++.++.+.|.+++...+||+|++|+++|+||.+|+...+..+       ...++|......
T Consensus       196 ~v~~im~~~--~~~v~~~~~~~eal~~m~~~~~~~lpVVD~~g~lvGiIt~~Dil~~l~~~-------~~ed~~~~~gv~  266 (449)
T TIGR00400       196 ILSSIMRSS--VFSIVGVNDQEEVARLIQKYDFLAVPVVDNEGRLVGIVTVDDIIDVIQSE-------ATEDFYMIAAVK  266 (449)
T ss_pred             cHHHHhCCC--CeeECCCCCHHHHHHHHHHcCCCEEeEEcCCCeEEEEEEHHHHHHHHHhh-------hHHHHHHhcCCC
Confidence            588999986  45899999999999999999999999999999999999999999988652       235565555444


Q ss_pred             eCCCccHHHHHHHhcCCCCCccEeEEE
Q 019775          290 IGPDAMAVEAMQKMESPPSPVQFLPVI  316 (336)
Q Consensus       290 v~~~~~l~~~~~~~~~~~~~~~~l~Vv  316 (336)
                      ..+++.+.+++..+.++  +...++|.
T Consensus       267 ~~~~~~l~~~~~~~~~~--R~~wL~v~  291 (449)
T TIGR00400       267 PLDDSYFDTSILVMAKN--RIIWLLVL  291 (449)
T ss_pred             CCcchhhhchHHHHHHh--ccchHHHH
Confidence            44567788888888888  78888774

This family of prokaryotic proteins models a class of Mg++ transporter first described in Bacillus firmus. May form a homodimer.

>KOG0475 consensus Cl- channel CLC-3 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]

Probab=98.27  E-value=6.1e-06  Score=77.77  Aligned_cols=125  Identities=14%  Similarity=0.139  Sum_probs=95.5

Q ss_pred             hhhhhhhccccCCCCccccC-CCcHHHHHHHHHhcCcceEEEEcC--CCcEEEEeeHHHHHHHHHhcC------------
Q 019775          207 LIFKVQDVMKPQKELPVCKE-GDLIMDQLVELTSKGCGCLLVIDE--EYHLIGTFTDGDLRRTLKASG------------  271 (336)
Q Consensus       207 ~~~~v~~im~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~ipVvd~--~~~~~G~it~~dl~~~~~~~~------------  271 (336)
                      ..+.+-+.++.++.+.+++. .++++|...++.+..++.+||+=+  ..+++|++.++++...+....            
T Consensus       544 ~~~~v~~p~~~~~~L~~i~~~s~tl~~le~~~~~t~~sgfpvvl~~~sq~lvGfv~rr~l~~~i~~ar~~q~~~~~~~~~  623 (696)
T KOG0475|consen  544 LAIPVMEPCRSESCLIVITQDSMTLEDLESLMEDTDFSGFPVVLSEDSQRLVGFVLRRNLFLAILNARKIQSFIVTTSIY  623 (696)
T ss_pred             hhhhhhchhcCchhheeccccceeHHHHHHHHhhcccCCceEEEccccceeEEEEchHHHHHHHhhhccccccceecccc
Confidence            33344344444434555544 589999999999999999997653  358999999999998765211            


Q ss_pred             ----------CchhhhhHhhhcCCCCeeeCCCccHHHHHHHhcCCCCCccEeEEEeCCCcEEEEEehhhHhhc
Q 019775          272 ----------EGIFKLTVGEMCNRSPRTIGPDAMAVEAMQKMESPPSPVQFLPVINRQNILIGIVTLHGLVSA  334 (336)
Q Consensus       272 ----------~~~~~~~i~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~l~Vv~~~~~~iGiit~~di~~~  334 (336)
                                ..+....+.++|+..|.++...++.+-++++|++-  +...+.|..+ |++.|+||++|++++
T Consensus       624 f~~~~~~~~~~~~~~~~lk~il~~tp~tv~d~tp~~~v~~~F~~l--g~~~~~v~~~-G~l~Giitkkd~l~~  693 (696)
T KOG0475|consen  624 FNDPSPSAVAGIPSRLDLKDILDMTPFTVTDLTPMETVVDLFRKL--GLRQILVTKN-GILLGIITKKDCLRH  693 (696)
T ss_pred             cCCCCccccCCCCCCcCceeeccCCcccccccCcHHHHHHHHHhh--CceEEEEccC-CeeEeeeehHHHHHh
Confidence                      01223467778888999999999999999999998  8888877655 999999999999975

>cd04603 CBS_pair_KefB_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the KefB (Kef-type K+ transport systems) domain which is involved in inorganic ion transport and metabolism

Probab=98.25  E-value=1.8e-06  Score=65.31  Aligned_cols=54  Identities=26%  Similarity=0.327  Sum_probs=48.6

Q ss_pred             hhhhccccCCCCccccCCCcHHHHHHHHHhcCcceEEEEcCCCcEEEEeeHHHHHH
Q 019775          210 KVQDVMKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRR  265 (336)
Q Consensus       210 ~v~~im~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~it~~dl~~  265 (336)
                      ++.++|...  ++++++++++.+++++|.+++.+.+||+|++|+++|+||.+|+.+
T Consensus        57 ~v~~~~~~~--~~~v~~~~~l~~al~~m~~~~~~~lpVvd~~~~~~Giit~~di~~  110 (111)
T cd04603          57 KVCEVYIVP--VPIVYCDSKVTDLLRIFRETEPPVVAVVDKEGKLVGTIYERELLR  110 (111)
T ss_pred             ChhheeecC--CcEECCCCcHHHHHHHHHHcCCCeEEEEcCCCeEEEEEEhHHhhc
Confidence            477888766  458999999999999999999999999998899999999999875

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>COG2222 AgaS Predicted phosphosugar isomerases [Cell envelope biogenesis, outer membrane]

Probab=98.25  E-value=3.4e-05  Score=69.77  Aligned_cols=136  Identities=16%  Similarity=0.183  Sum_probs=104.5

Q ss_pred             hHHHHHHHHHHcCCCeEEEEeccchHHHHHHHHHHHHhc-CCeeeecCCccccccccCCCCCCcEEEEEeCCCCcHH-HH
Q 019775           41 PHTLTFTQTLLKCRGTIFFTGVGKSGFVANKISQTLISL-GIKSGFLNPLDALHGDIGILSSDDILVMFSKSGNTEE-LL  118 (336)
Q Consensus        41 ~~i~~~~~~i~~a~~~I~i~G~G~s~~~a~~~~~~l~~~-g~~~~~~~~~~~~~~~~~~~~~~dlvi~iS~sG~~~~-~~  118 (336)
                      +..++++....+. ++||+.|.|..+.+|.+.+.+|..+ ++++..+.+++..+.....++++-+||++-..+++++ ..
T Consensus       189 ~~~~~~~~~~~~~-~~i~~lGsG~~~g~A~e~aLkl~E~~~~~s~a~~s~E~~HGp~elv~~~~pvi~~~~~d~tr~~~~  267 (340)
T COG2222         189 EDAQEFAEEYADE-DRIYTLGSGPLYGAAYEAALKLKEMQWIHSEAISSGEFRHGPKELVEEGTPVLLFVSEDETRELDE  267 (340)
T ss_pred             HHHHHHHHHhcCC-CEEEEECCcccHHHHHHHHHHHHHHccccceeeeccccccCcHHHcCCCceEEEEecCCcchhHHH
Confidence            3444566666777 6999999999999999999999887 8999999999999999999999999999988888866 56


Q ss_pred             HHHHHHHHcCCeEEEEeCCCCCccccccCEEEEcCCCcccCCCCCCChhHHHHHHHHHHHHHHHHHhhcCCCh
Q 019775          119 KVVPCAKAKGAYLVSVTSVEGNALAAVCDMNVHLPVERELCPFDLAPVTSTAIQMVFGDTVAIAMMGARNLTR  191 (336)
Q Consensus       119 ~~~~~ak~~g~~vi~IT~~~~s~l~~~ad~~i~~~~~~~~~~~~~~~~~s~~~~~~l~d~l~~~~~~~~~~~~  191 (336)
                      ++++.++++|+++++|-...       .++.  .+..     .....+...+..+..++.+...+...++.++
T Consensus       268 r~~~~~~~~ga~v~vi~a~~-------~~~~--~~~~-----~~~~~l~~~~~~~~v~~~~~~~~a~~rg~~p  326 (340)
T COG2222         268 RALKFLKNYGAKVLVIDAKD-------AALD--LIDQ-----RVRHDLAPPLLSLVVAQRLAYALAVARGHNP  326 (340)
T ss_pred             HHHHHHHhcCCeEEEEcCcc-------cccC--CCCc-----cccchhHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence            77899999999999998754       1111  1111     1124455556666777777777777766544

>PRK03868 glucose-6-phosphate isomerase; Provisional

Probab=98.24  E-value=9.1e-06  Score=75.58  Aligned_cols=112  Identities=15%  Similarity=0.163  Sum_probs=79.5

Q ss_pred             HHHHHHHHH---cCCCeEEEEeccchHHHHHHHHHHHHhc---CCeeeecC--CccccccccCC-CCCCcEEEEEeCCCC
Q 019775           43 TLTFTQTLL---KCRGTIFFTGVGKSGFVANKISQTLISL---GIKSGFLN--PLDALHGDIGI-LSSDDILVMFSKSGN  113 (336)
Q Consensus        43 i~~~~~~i~---~a~~~I~i~G~G~s~~~a~~~~~~l~~~---g~~~~~~~--~~~~~~~~~~~-~~~~dlvi~iS~sG~  113 (336)
                      ++++.+.+.   +- +.|+++|.|.|+.-++.+.+.|...   +.+++++.  +...+...... ..++.++|++|.||.
T Consensus        45 i~e~~~~i~~~~~~-~~VV~iGIGGS~LG~~~l~~al~~~~~~~~~i~f~~n~dp~~~~~~l~~~~~~~TlviviSKSGt  123 (410)
T PRK03868         45 IEESLKFVKDKESI-KNIVVIGIGGSSLGVKAIYSFLKNEKNNKKELHFLENTDPISINKTLSKINLENTLFIVISKSGT  123 (410)
T ss_pred             HHHHHHHHHhhCCC-CEEEEEecChHHHHHHHHHHHHHhhccCCCcEEEEecCCHHHHHHHHhcCCCCcEEEEEEeCCCC
Confidence            555554553   45 5999999999998888887777532   45566555  44444444443 347789999999999


Q ss_pred             cHHHHHHHHHHHHcC------C-eEEEEeCCCCCccccccC----EEEEcCCCc
Q 019775          114 TEELLKVVPCAKAKG------A-YLVSVTSVEGNALAAVCD----MNVHLPVER  156 (336)
Q Consensus       114 ~~~~~~~~~~ak~~g------~-~vi~IT~~~~s~l~~~ad----~~i~~~~~~  156 (336)
                      |.|++.+.+.+++++      + ++++||+ .++++.++|+    -++.+|..-
T Consensus       124 T~ETl~~~~~~~~~~~~~~~~~~~~v~vTd-~~s~L~~~a~~~g~~~f~ip~~V  176 (410)
T PRK03868        124 TIETISIFKYLLSHFKLDQELKKNFLFITD-PDSKLEQFAKENNIKCFNIPKNV  176 (410)
T ss_pred             CHHHHHHHHHHHHHhccccccccEEEEEec-CCchHHHhHHhcCCcEEecCCCC
Confidence            999999999998873      3 4667776 5778988886    456665543

>cd04597 CBS_pair_DRTGG_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream

Probab=98.22  E-value=4.3e-06  Score=63.64  Aligned_cols=56  Identities=21%  Similarity=0.235  Sum_probs=50.7

Q ss_pred             hhhhhhccccCCCCccccCCCcHHHHHHHHHhcCcceEEEEcCCCcEEEEeeHHHHHH
Q 019775          208 IFKVQDVMKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRR  265 (336)
Q Consensus       208 ~~~v~~im~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~it~~dl~~  265 (336)
                      ..+++++|.+.  ++++++++++.++++.|.+.+...+||+|++|+++|+++.++|..
T Consensus        57 ~~~v~dim~~~--~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~~~l~Givt~~dl~~  112 (113)
T cd04597          57 HPRVRDVINRK--PVTARPNDPLREALNLMHEHNIRTLPVVDDDGTPAGIITLLDLAE  112 (113)
T ss_pred             hhhHHHhcCCC--CCEECCcCcHHHHHHHHHHcCCCEEEEECCCCeEEEEEEHHHhhc
Confidence            46899999886  558999999999999999999999999998899999999999864

The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04597 CBS_pair_DRTGG_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream

Probab=98.15  E-value=5.4e-06  Score=63.04  Aligned_cols=55  Identities=31%  Similarity=0.455  Sum_probs=51.0

Q ss_pred             hhHhhhcCCCCeeeCCCccHHHHHHHhcCCCCCccEeEEEeCCCcEEEEEehhhHhh
Q 019775          277 LTVGEMCNRSPRTIGPDAMAVEAMQKMESPPSPVQFLPVINRQNILIGIVTLHGLVS  333 (336)
Q Consensus       277 ~~i~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~l~Vv~~~~~~iGiit~~di~~  333 (336)
                      .++.++|.+++..+.+++++.++++.|.+.  +...+||+|++|+++|+|+..||.+
T Consensus        58 ~~v~dim~~~~~~v~~~~~l~~a~~~~~~~--~~~~lpVvd~~~~l~Givt~~dl~~  112 (113)
T cd04597          58 PRVRDVINRKPVTARPNDPLREALNLMHEH--NIRTLPVVDDDGTPAGIITLLDLAE  112 (113)
T ss_pred             hhHHHhcCCCCCEECCcCcHHHHHHHHHHc--CCCEEEEECCCCeEEEEEEHHHhhc
Confidence            679999988899999999999999999988  8899999998899999999999865

The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>PRK14869 putative manganese-dependent inorganic pyrophosphatase; Provisional

Probab=98.11  E-value=6.7e-07  Score=87.11  Aligned_cols=120  Identities=15%  Similarity=0.160  Sum_probs=89.3

Q ss_pred             hhhhccc-cCCCCccccCCCcHHHHHHHHHhcCcceEEEEcCCCcEEEEeeHHHHHHHHHhcC---------C-------
Q 019775          210 KVQDVMK-PQKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRRTLKASG---------E-------  272 (336)
Q Consensus       210 ~v~~im~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~it~~dl~~~~~~~~---------~-------  272 (336)
                      +|+++|. ++  ++++++++++.++.+.|.+++++.+||+|++|+++|+++.+|+......+.         .       
T Consensus       247 ~V~~iM~~~~--~~~~~~~~~~~~~~~~m~~~~~~~~PVvd~~g~lvGiit~~dl~~~~~~~~iLVD~~e~~q~~~~~~~  324 (546)
T PRK14869        247 PVSYIMTTED--LVTFSKDDYLEDVKEVMLKSRYRSYPVVDEDGKVVGVISRYHLLSPVRKKVILVDHNEKSQAVEGIEE  324 (546)
T ss_pred             CHHHhccCCC--cEEECCCCcHHHHHHHHHhcCCCceEEEcCCCCEEEEEEHHHhhccccCceEEEcCccccccccchhh
Confidence            6899998 55  568999999999999999999999999999999999999999998543200         0       


Q ss_pred             -----chhhhhHhhhcCCCCeee---CCCccHHHHHHHhcCCCCCccEeEEEeCCCcEEEEEehhhHhhc
Q 019775          273 -----GIFKLTVGEMCNRSPRTI---GPDAMAVEAMQKMESPPSPVQFLPVINRQNILIGIVTLHGLVSA  334 (336)
Q Consensus       273 -----~~~~~~i~~~~~~~~~~v---~~~~~l~~~~~~~~~~~~~~~~l~Vv~~~~~~iGiit~~di~~~  334 (336)
                           ...+.++.+++.+.|+.+   +...+...+.+.|.+.  +....|++.. ..+.|+++-.+.++.
T Consensus       325 ~~i~~iiDHH~~~~~~~~~pi~~~~~~~gst~tiv~~~~~~~--~i~~~~~ia~-~ll~gIlsDT~~f~~  391 (546)
T PRK14869        325 AEILEIIDHHRLGDIQTSNPIFFRNEPVGSTSTIVARMYREN--GIEPSPEIAG-LLLAAILSDTLLFKS  391 (546)
T ss_pred             ceEEEEecCCccCCCCCCCCcEEEeeeeeeHHHHHHHHHHHc--CCCCCHHHHH-HHHHHHHHHhcCccC
Confidence                 001223455666666544   3356777888888888  7777777755 567888877766543

>PRK00973 glucose-6-phosphate isomerase; Provisional

Probab=98.10  E-value=2e-05  Score=73.85  Aligned_cols=113  Identities=19%  Similarity=0.224  Sum_probs=79.0

Q ss_pred             HHHHHHHHHHcCCCeEEEEeccchHHHHHHHHHHHHhc-----------CCeeeecCC--ccccccccCCCC-CCcEEEE
Q 019775           42 HTLTFTQTLLKCRGTIFFTGVGKSGFVANKISQTLISL-----------GIKSGFLNP--LDALHGDIGILS-SDDILVM  107 (336)
Q Consensus        42 ~i~~~~~~i~~a~~~I~i~G~G~s~~~a~~~~~~l~~~-----------g~~~~~~~~--~~~~~~~~~~~~-~~dlvi~  107 (336)
                      .++++.+.+.+. +.|.++|.|.|+.-++.+...|...           +..+++.++  ...+...+..++ ++.++++
T Consensus        60 ~~~~~~~~~~~~-~~vVviGIGGS~LG~~al~~al~~~~~~~~~~~~~~~~~l~~~~n~dp~~~~~~l~~l~~~~Tl~iv  138 (446)
T PRK00973         60 SYEELKEWSKNF-DNVVVLGIGGSALGNLALHYALNPLNWNELSKEERNGPRVFVLDNVDPEKTASILDVIDLEKTLFNV  138 (446)
T ss_pred             HHHHHHHHhhcC-CEEEEEcCCchhHHHHHHHHHHhhhccccccccccCCceEEEeCCCCHHHHHHHHHhCCcccEEEEE
Confidence            555555544445 5999999999998777777666532           234555553  333444444455 5678999


Q ss_pred             EeCCCCcHHHHHHHHHHHH--------cCCeEEEEeCCCCCccccccC----EEEEcCCC
Q 019775          108 FSKSGNTEELLKVVPCAKA--------KGAYLVSVTSVEGNALAAVCD----MNVHLPVE  155 (336)
Q Consensus       108 iS~sG~~~~~~~~~~~ak~--------~g~~vi~IT~~~~s~l~~~ad----~~i~~~~~  155 (336)
                      +|.||.|.|+....+.+++        .+.++|+||+...++|.++|+    -++.+|.+
T Consensus       139 iSKSGtT~ET~~~f~~~~~~l~~~g~~~~~~~vaiTd~~~g~L~~~A~~~g~~~f~ip~~  198 (446)
T PRK00973        139 ISKSGNTAETLANYLIIRGILEKLGLDPKKHLVFTTDPEKGKLKKIAEKEGYRTLEIPEN  198 (446)
T ss_pred             EeCCCCCHHHHHHHHHHHHHHHhcCccccceEEEEcCCCccchHHHHHHcCCcEEeeCCC
Confidence            9999999999998887765        456899999977777877776    34555554

>cd04619 CBS_pair_6 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.07  E-value=7.8e-06  Score=62.06  Aligned_cols=55  Identities=25%  Similarity=0.453  Sum_probs=48.7

Q ss_pred             hhhhhccccCCCCccccCCCcHHHHHHHHHhcCcceEEEEcCCCcEEEEeeHHHHHH
Q 019775          209 FKVQDVMKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRR  265 (336)
Q Consensus       209 ~~v~~im~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~it~~dl~~  265 (336)
                      .+++++|...  .+++.+++++.++++.|.+++...+||+|++|+++|+|+.+|+..
T Consensus        59 ~~v~~~~~~~--~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~~Gvi~~~dl~~  113 (114)
T cd04619          59 APVENVMTRA--VVSCRPGDLLHDVWQVMKQRGLKNIPVVDENARPLGVLNARDALK  113 (114)
T ss_pred             CCHHHHhcCC--CeeECCCCCHHHHHHHHHHcCCCeEEEECCCCcEEEEEEhHhhcc
Confidence            3567788776  458999999999999999999999999998899999999999864

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>TIGR02815 agaS_fam putative sugar isomerase, AgaS family

Probab=98.04  E-value=0.00023  Score=65.85  Aligned_cols=144  Identities=17%  Similarity=0.184  Sum_probs=99.5

Q ss_pred             HHHHHHHHHH--cCCCeEEEEeccchHHHHHHHHHHHHhcC-Cee--eecCCccccccccCCCCCCcEEEEEeCCCCc-H
Q 019775           42 HTLTFTQTLL--KCRGTIFFTGVGKSGFVANKISQTLISLG-IKS--GFLNPLDALHGDIGILSSDDILVMFSKSGNT-E  115 (336)
Q Consensus        42 ~i~~~~~~i~--~a~~~I~i~G~G~s~~~a~~~~~~l~~~g-~~~--~~~~~~~~~~~~~~~~~~~dlvi~iS~sG~~-~  115 (336)
                      ++....+.+.  +. +++|++|.|..+.+|.+.+.+|.++- ..+  ......+..+.....++++..+|++...+.. +
T Consensus       201 ~~~~~~~~~~~~~~-~~~~~lGrG~~y~~A~E~ALKlkE~~~~~~~~~~~~~~Ef~HGP~alv~~~~~vi~l~~~d~~~~  279 (372)
T TIGR02815       201 QWDFSEGVLGYAPW-ERIVYLGSGGLQGLARESALKVLELTAGKVMAFYDSSLGFRHGPKSLVDDETLVVVYVSSDPYTR  279 (372)
T ss_pred             HHHHHHHHHhhcCC-CeEEEEeCCCChHHHHHHHHHHHHHHHHHHheeeccccccccChHHHhcCCCeEEEEEcCchhhh
Confidence            5566666653  66 69999999999999999999999986 343  3344567788888889999999999877763 2


Q ss_pred             -HHHHHHHHHHHcC--CeEEEEeCCCCCccccccCEEEEcCCCcccCCCCCCChhHHHHHHHHHHHHHHHHHhhcCCChH
Q 019775          116 -ELLKVVPCAKAKG--AYLVSVTSVEGNALAAVCDMNVHLPVERELCPFDLAPVTSTAIQMVFGDTVAIAMMGARNLTRD  192 (336)
Q Consensus       116 -~~~~~~~~ak~~g--~~vi~IT~~~~s~l~~~ad~~i~~~~~~~~~~~~~~~~~s~~~~~~l~d~l~~~~~~~~~~~~~  192 (336)
                       ...++++..+++|  .+++.|++.. ... ...+..+.+|....   .  ....+.+.....+.+|...+...+|.+++
T Consensus       280 ~~~~~~l~e~~~~g~~~~v~~I~~~~-~~~-~~~~~~i~i~~~~~---~--~~~~~~~~~vip~QllA~~~A~~~G~dpD  352 (372)
T TIGR02815       280 QYDLDLLAELRRDNQAGRVVAISAES-SDI-VAAGDHFILPPSRH---F--IDVELAFPYLIFAQTLAFEQSLALGNTPD  352 (372)
T ss_pred             hhhHHHHHHHHhcCCCceEEEEEcCC-ccc-ccCCCEEEeCCCCC---C--chHHhHHHHHHHHHHHHHHHHHHCCCCCC
Confidence             2257899999985  9999999752 111 12244566654311   0  11112333455578888888888887765


Q ss_pred             H
Q 019775          193 E  193 (336)
Q Consensus       193 ~  193 (336)
                      .
T Consensus       353 ~  353 (372)
T TIGR02815       353 N  353 (372)
T ss_pred             C
Confidence            4

Some members of this protein family are found in regions associated with N-acetyl-galactosamine and galactosamine untilization and are suggested to be isomerases.

>PRK14096 pgi glucose-6-phosphate isomerase; Provisional

Probab=98.03  E-value=4.4e-05  Score=72.60  Aligned_cols=113  Identities=21%  Similarity=0.309  Sum_probs=81.8

Q ss_pred             hHHHHHHHHHHc----------CCCeEEEEeccchHHHHHHHHHHHHhc--CCeeeecC--CccccccccCCCC---CCc
Q 019775           41 PHTLTFTQTLLK----------CRGTIFFTGVGKSGFVANKISQTLISL--GIKSGFLN--PLDALHGDIGILS---SDD  103 (336)
Q Consensus        41 ~~i~~~~~~i~~----------a~~~I~i~G~G~s~~~a~~~~~~l~~~--g~~~~~~~--~~~~~~~~~~~~~---~~d  103 (336)
                      +.++++++.+.+          . +.|.++|.|.|+.=.+.+...|...  +.+++++.  +...+...+..++   ++.
T Consensus        92 ~~i~~fa~~i~~G~~~~~~g~~~-~~vV~IGIGGS~LGp~~v~~AL~~~~~~~~~~f~dN~Dp~~~~~~l~~l~~~~~~T  170 (528)
T PRK14096         92 AQIEAFAAKVHSGTIKPPNGEKF-TDVLWIGIGGSALGPQFVAEALQPNSDGLNIHFIDNTDPDGIDRVLAELGDRLATT  170 (528)
T ss_pred             HHHHHHHHHHHcCCccCCCCCCC-CeEEEECCCcchHHHHHHHHHHhhcCCCCcEEEEcCCCHHHHHHHHHHhcCCCCcE
Confidence            456677777764          4 5899999999998777777777643  34566665  4444555555554   678


Q ss_pred             EEEEEeCCCCcHHHHHHHHHHHH----cC----CeEEEEeCCCCCcccccc---C--EEEEcCCC
Q 019775          104 ILVMFSKSGNTEELLKVVPCAKA----KG----AYLVSVTSVEGNALAAVC---D--MNVHLPVE  155 (336)
Q Consensus       104 lvi~iS~sG~~~~~~~~~~~ak~----~g----~~vi~IT~~~~s~l~~~a---d--~~i~~~~~  155 (336)
                      ++|++|.||.|.|+...++.+++    +|    .++|+||+ .++++.++|   +  -+|.++..
T Consensus       171 LviViSKSGtT~ET~~n~~~~~~~l~~~G~~~~~h~VAVT~-~~s~L~~~A~~~g~~~~F~~~d~  234 (528)
T PRK14096        171 LVVVISKSGGTPETRNGMLEAKAAYEAAGLDFASHAVAITM-KGSKLDQLAQSEGWLARFPMWDW  234 (528)
T ss_pred             EEEEEeCCCCCHHHHHHHHHHHHHHHhhcccccceEEEEEC-CCcHHhhhccccCceeEeeCCCC
Confidence            99999999999999988875443    34    57999998 688899988   3  35665554

>PRK09533 bifunctional transaldolase/phosoglucose isomerase; Validated

Probab=98.03  E-value=1.7e-05  Score=80.27  Aligned_cols=106  Identities=19%  Similarity=0.204  Sum_probs=74.6

Q ss_pred             hHHHHHHHHHHcCC-CeEEEEeccchHHHHHHHHHHHHhc-CCee-eecC--CccccccccCCCC-CCcEEEEEeCCCCc
Q 019775           41 PHTLTFTQTLLKCR-GTIFFTGVGKSGFVANKISQTLISL-GIKS-GFLN--PLDALHGDIGILS-SDDILVMFSKSGNT  114 (336)
Q Consensus        41 ~~i~~~~~~i~~a~-~~I~i~G~G~s~~~a~~~~~~l~~~-g~~~-~~~~--~~~~~~~~~~~~~-~~dlvi~iS~sG~~  114 (336)
                      ++++++++.+...+ ++|+++|+|.|+.-.+.+.+.|... +.+. +++.  +...+...+..++ ++.++|++|.||.|
T Consensus       441 ~~i~~fa~~Ir~~~~d~VVviGIGGS~LG~~~l~~~l~~~~~~p~l~~ldn~DP~~v~~~l~~~~~e~TLvIViSKSGtT  520 (948)
T PRK09533        441 AEYEAFAEEVRAEGFTDAVVLGMGGSSLGPEVLAETFGQRDGFPKLHVLDSTDPAQVRALEAAVDLARTLFIVSSKSGGT  520 (948)
T ss_pred             HHHHHHHHHHhcCCCCEEEEEccChhHHHHHHHHHHHHhcCCCceEEEEeCCChHHHHHHHhhCCcccEEEEEEeCCCCC
Confidence            46777888886422 6999999999998888777766533 3333 3333  2222222222232 56789999999999


Q ss_pred             HHHHHHHHHHH---------HcCCeEEEEeCCCCCccccccC
Q 019775          115 EELLKVVPCAK---------AKGAYLVSVTSVEGNALAAVCD  147 (336)
Q Consensus       115 ~~~~~~~~~ak---------~~g~~vi~IT~~~~s~l~~~ad  147 (336)
                      .|+..+.+.++         +.|.++|+||+ +++++.++|+
T Consensus       521 ~ET~sa~~~~~~~l~~~~g~~~~~~~VaVTd-pgs~L~~~A~  561 (948)
T PRK09533        521 LEPNIFKDYFFARVKEVLGAKAGRHFVAVTD-PGSSLEKVAK  561 (948)
T ss_pred             HHHHHHHHHHHHHhhhhcccccCCeEEEEeC-CCChHHHHHH
Confidence            99999988776         34778999999 5889988864

>COG3448 CBS-domain-containing membrane protein [Signal transduction mechanisms]

Probab=98.00  E-value=7.7e-06  Score=70.31  Aligned_cols=98  Identities=24%  Similarity=0.331  Sum_probs=71.4

Q ss_pred             cccCCCcHHHHHHHHHhcCcceEEEEcCCCcEEEEeeHHHHHHHHHhcC-----CchhhhhHhhhcCCCCeeeCCCccHH
Q 019775          223 VCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRRTLKASG-----EGIFKLTVGEMCNRSPRTIGPDAMAV  297 (336)
Q Consensus       223 ~~~~~~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~it~~dl~~~~~~~~-----~~~~~~~i~~~~~~~~~~v~~~~~l~  297 (336)
                      ...-+-+-+|+.+.+.+.+-    .+|        |+++||...+.+-.     .+.......++|.++..+++.++++.
T Consensus       198 ~~rvgfs~~Dld~aL~~~~E----~lD--------IdrddLe~llr~~elqa~~R~~~~LtcadIMSrdVvtv~~~ts~d  265 (382)
T COG3448         198 SQRVGFSSEDLDAALQRLGE----TLD--------IDRDDLERLLRETELQALRRRMGELTCADIMSRDVVTVSTDTSID  265 (382)
T ss_pred             hhccCCCHHHHHHHHHhcCc----eec--------CCHHHHHHHHHHHHHHHHHHHhccccHHHhcCccceecCCcCChH
Confidence            33445556677666665431    112        34555554443211     11114578899999999999999999


Q ss_pred             HHHHHhcCCCCCccEeEEEeCCCcEEEEEehhhHhhc
Q 019775          298 EAMQKMESPPSPVQFLPVINRQNILIGIVTLHGLVSA  334 (336)
Q Consensus       298 ~~~~~~~~~~~~~~~l~Vv~~~~~~iGiit~~di~~~  334 (336)
                      ++.+.|.++  +...+||+|++.+++|+|+..|+++.
T Consensus       266 hA~~ll~~H--~ikaLPV~d~~~rl~GiVt~~dl~~~  300 (382)
T COG3448         266 HARKLLQEH--RIKALPVLDEHRRLVGIVTQRDLLKH  300 (382)
T ss_pred             HHHHHHHHc--CcccccccccccceeeeeeHHHHhhc
Confidence            999999999  99999999999999999999999873

>cd04607 CBS_pair_NTP_transferase_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain associated with the NTP (Nucleotidyl transferase) domain downstream

Probab=97.94  E-value=1.8e-05  Score=59.75  Aligned_cols=54  Identities=26%  Similarity=0.279  Sum_probs=47.9

Q ss_pred             hhhhccccCCCCccccCCCcHHHHHHHHHhcCcceEEEEcCCCcEEEEeeHHHHHH
Q 019775          210 KVQDVMKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRR  265 (336)
Q Consensus       210 ~v~~im~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~it~~dl~~  265 (336)
                      ++.++|.+.  ++++++++++.++++.|.+++.+.+||++++|+++|+|+.+|+..
T Consensus        59 ~v~~~~~~~--~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~Gvit~~di~~  112 (113)
T cd04607          59 PVSEVMNRN--PITAKVGSSREEILALMRERSIRHLPILDEEGRVVGLATLDDLLS  112 (113)
T ss_pred             CHHHhhcCC--CEEEcCCCCHHHHHHHHHHCCCCEEEEECCCCCEEEEEEhHHhcc
Confidence            466788776  458999999999999999999999999998899999999999864

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04617 CBS_pair_4 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.92  E-value=1.6e-05  Score=60.68  Aligned_cols=56  Identities=14%  Similarity=0.299  Sum_probs=47.5

Q ss_pred             hhhhccccCCCCccccCCCcHHHHHHHHHhcCcceEEEEcCC---CcEEEEeeHHHHHH
Q 019775          210 KVQDVMKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEE---YHLIGTFTDGDLRR  265 (336)
Q Consensus       210 ~v~~im~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~---~~~~G~it~~dl~~  265 (336)
                      +++++|.....++++++++++.+++++|.+++...+||+|++   |+++|+||.+++..
T Consensus        59 ~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~lpVvd~~~~~~~l~Gvit~~~l~~  117 (118)
T cd04617          59 PVGVIMTRMPNITTTTPEESVLEAAKKLIEHQVDSLPVVEKVDEGLEVIGRITKTNITK  117 (118)
T ss_pred             CHHHHhCCCCCcEEECCCCcHHHHHHHHHHcCCCEeeEEeCCCccceEEEEEEhhheec
Confidence            566788752225699999999999999999999999999976   69999999998763

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04801 CBS_pair_M50_like This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the metalloprotease peptidase M50

Probab=97.91  E-value=1.4e-05  Score=60.44  Aligned_cols=56  Identities=29%  Similarity=0.420  Sum_probs=47.8

Q ss_pred             hhhhccccCCCCccccCCCcHHHHHHHHHhcCcceEEEEcCCCcEEEEeeHHHHHH
Q 019775          210 KVQDVMKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRR  265 (336)
Q Consensus       210 ~v~~im~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~it~~dl~~  265 (336)
                      ++.++|.+...++++.+++++.++++.|.+++.+.+||++++|+++|+++.+++..
T Consensus        58 ~v~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vv~~~~~~~Gvl~~~di~~  113 (114)
T cd04801          58 TVIQVMTPAAKLVTVLSEESLAEVLKLLEEQGLDELAVVEDSGQVIGLITEADLLR  113 (114)
T ss_pred             chhhhhcccccceEECCCCcHHHHHHHHHHCCCCeeEEEcCCCcEEEEEeccceec
Confidence            46677875433458899999999999999999999999998789999999998753

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>COG3620 Predicted transcriptional regulator with C-terminal CBS domains [Transcription]

Probab=97.90  E-value=1.8e-05  Score=61.88  Aligned_cols=57  Identities=21%  Similarity=0.380  Sum_probs=52.7

Q ss_pred             hhhHhhhcCCCCeeeCCCccHHHHHHHhcCCCCCccEeEEEeCCCcEEEEEehhhHhhcC
Q 019775          276 KLTVGEMCNRSPRTIGPDAMAVEAMQKMESPPSPVQFLPVINRQNILIGIVTLHGLVSAG  335 (336)
Q Consensus       276 ~~~i~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~l~Vv~~~~~~iGiit~~di~~~~  335 (336)
                      ...+..+|+.+.+++.+++++.++.++|++.  +...+||+++ ++++|-||.++|.+..
T Consensus        64 ~ita~~iM~spvv~v~pdDsi~~vv~lM~~~--g~SQlPVi~~-~k~VGsItE~~iv~~~  120 (187)
T COG3620          64 RITAKTIMHSPVVSVSPDDSISDVVNLMRDK--GISQLPVIEE-DKVVGSITENDIVRAL  120 (187)
T ss_pred             eEeHhhhccCCeeEECchhhHHHHHHHHHHc--CCccCceeeC-CeeeeeecHHHHHHHH
Confidence            4567889999999999999999999999999  9999999999 9999999999998763

>cd04627 CBS_pair_14 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.89  E-value=3.2e-05  Score=59.49  Aligned_cols=52  Identities=19%  Similarity=0.316  Sum_probs=45.7

Q ss_pred             hhccccCCCCccccCCCcHHHHHHHHHhcCcceEEEEcCCCcEEEEeeHHHHHH
Q 019775          212 QDVMKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRR  265 (336)
Q Consensus       212 ~~im~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~it~~dl~~  265 (336)
                      .++|...  +.+++++.++.++++.|.+++.+.+||+|++|+++|+||.+|++.
T Consensus        71 ~~~~~~~--~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~vGiit~~di~~  122 (123)
T cd04627          71 LTIGTSD--VISINGDQPLIDALHLMHNEGISSVAVVDNQGNLIGNISVTDVRL  122 (123)
T ss_pred             cccCcCC--ceEeCCCCCHHHHHHHHHHcCCceEEEECCCCcEEEEEeHHHhhc
Confidence            4566555  568999999999999999999999999998899999999999863

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04618 CBS_pair_5 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.88  E-value=2e-05  Score=58.26  Aligned_cols=45  Identities=18%  Similarity=0.087  Sum_probs=41.5

Q ss_pred             CccccCCCcHHHHHHHHHhcCcceEEEEcCC-CcEEEEeeHHHHHH
Q 019775          221 LPVCKEGDLIMDQLVELTSKGCGCLLVIDEE-YHLIGTFTDGDLRR  265 (336)
Q Consensus       221 ~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~-~~~~G~it~~dl~~  265 (336)
                      ++++.+++++.++++.|.+++.+.+||+|++ |+++|++|.+|++.
T Consensus        52 ~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~~~giit~~d~~~   97 (98)
T cd04618          52 LVSIHPERSLFDAALLLLKNKIHRLPVIDPSTGTGLYILTSRRILK   97 (98)
T ss_pred             eEEeCCCCcHHHHHHHHHHCCCCEeeEEECCCCCceEEeehhhhhc
Confidence            3489999999999999999999999999987 89999999999864

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04620 CBS_pair_7 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.87  E-value=2.8e-05  Score=58.89  Aligned_cols=54  Identities=24%  Similarity=0.340  Sum_probs=46.5

Q ss_pred             hhhhccccCCCCccccCC--CcHHHHHHHHHhcCcceEEEEcCCCcEEEEeeHHHHHH
Q 019775          210 KVQDVMKPQKELPVCKEG--DLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRR  265 (336)
Q Consensus       210 ~v~~im~~~~~~~~~~~~--~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~it~~dl~~  265 (336)
                      ++.++|.+.  +++++++  .++.++++.|.+++...+||+|++|+++|++|.+++.+
T Consensus        59 ~i~~~~~~~--~~~v~~~~~~~l~~a~~~~~~~~~~~~pVvd~~~~~~Gvit~~dl~~  114 (115)
T cd04620          59 PIGEVMTQP--VVTLQESEIQDIFTALSLFRQHQIRHLPVLDDQGQLIGLVTAESIRQ  114 (115)
T ss_pred             CHHHhcCCC--cEEEecccccCHHHHHHHHHHhCCceEEEEcCCCCEEEEEEhHHhhc
Confidence            566788765  4577776  78999999999999999999998899999999999874

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04600 CBS_pair_HPP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the HPP motif domain

Probab=97.87  E-value=3e-05  Score=59.53  Aligned_cols=55  Identities=27%  Similarity=0.385  Sum_probs=48.9

Q ss_pred             hhhhhccccCCCCccccCCCcHHHHHHHHHhcCcceEEEEcCCCcEEEEeeHHHHHH
Q 019775          209 FKVQDVMKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRR  265 (336)
Q Consensus       209 ~~v~~im~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~it~~dl~~  265 (336)
                      .++.++|...  ++++++++++.++++.|.+.+.+.+||+|++|+++|+++..|+..
T Consensus        69 ~~i~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~~~~Vv~~~g~~~Gvit~~di~~  123 (124)
T cd04600          69 ETVGDIMSPP--VVTVRPDTPIAELVPLLADGGHHHVPVVDEDRRLVGIVTQTDLIA  123 (124)
T ss_pred             ccHHHhccCC--CeeeCCCCcHHHHHHHHHhcCCCceeEEcCCCCEEEEEEhHHhhc
Confidence            3577888776  558999999999999999999999999998899999999999874

These proteins are integral membrane proteins with four transmembrane spanning helices. The function of these proteins is uncertain, but they are thought to be transporters. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04606 CBS_pair_Mg_transporter This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain in the magnesium transporter, MgtE

Probab=97.86  E-value=3.4e-05  Score=57.87  Aligned_cols=56  Identities=23%  Similarity=0.202  Sum_probs=49.3

Q ss_pred             hhhhhccccCCCCccccCCCcHHHHHHHHHhcCcceEEEEcCCCcEEEEeeHHHHHHH
Q 019775          209 FKVQDVMKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRRT  266 (336)
Q Consensus       209 ~~v~~im~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~it~~dl~~~  266 (336)
                      .+++++|.+.  .+.+.++.++.++++.|.+.+...+||++++|+++|+++..++...
T Consensus        53 ~~v~~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~Gvit~~dll~~  108 (109)
T cd04606          53 TPVSDIMDTD--VISVSADDDQEEVARLFEKYDLLALPVVDEEGRLVGIITVDDVIDV  108 (109)
T ss_pred             chHHHHhCCC--CeEEcCCCCHHHHHHHHHHcCCceeeeECCCCcEEEEEEhHHhhhh
Confidence            3577888776  4589999999999999999999999999988999999999999864

MgtE and its homologs are found in eubacteria, archaebacteria, and eukaryota. Members of this family transport Mg2+ or other divalent cations into the cell via two highly conserved aspartates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>KOG1764 consensus 5'-AMP-activated protein kinase, gamma subunit [Energy production and conversion]

Probab=97.84  E-value=0.0001  Score=68.03  Aligned_cols=111  Identities=16%  Similarity=0.237  Sum_probs=91.5

Q ss_pred             CccccCCCcHHHHHHHHHhcCcceEEEEc-CCCcEEEEeeHHHHHHHHHhcCCch-----hhhhHhhhc---CCCCeeeC
Q 019775          221 LPVCKEGDLIMDQLVELTSKGCGCLLVID-EEYHLIGTFTDGDLRRTLKASGEGI-----FKLTVGEMC---NRSPRTIG  291 (336)
Q Consensus       221 ~~~~~~~~~v~~~~~~~~~~~~~~ipVvd-~~~~~~G~it~~dl~~~~~~~~~~~-----~~~~i~~~~---~~~~~~v~  291 (336)
                      +..+.+..++.++...+.++++..+||.| +.+.+.+++|...+++++.......     ...++.++-   -.....+.
T Consensus       164 ~~~i~p~~s~l~~~~~l~~~~~~rvpv~d~~~~~v~~ilt~~rIl~~l~~~~~~~~~~~~l~~s~~dl~ig~~~~i~~i~  243 (381)
T KOG1764|consen  164 FVSISPESSLLDAVLLLIKSRIHRVPVIDPETGEVLYILTQRRILKFLWLNGRLLPLPSLLSKSLSDLGIGTWSNIASIS  243 (381)
T ss_pred             ceeecCcHHHHHHHHHHHhCCccceeeecccccceeeehhHHHHHHHHHHhhcccccHHHhhCCHHHhCcchhhhheeec
Confidence            36889999999999999999999999999 5579999999999999887644322     122333321   12357799


Q ss_pred             CCccHHHHHHHhcCCCCCccEeEEEeCCCcEEEEEehhhHhh
Q 019775          292 PDAMAVEAMQKMESPPSPVQFLPVINRQNILIGIVTLHGLVS  333 (336)
Q Consensus       292 ~~~~l~~~~~~~~~~~~~~~~l~Vv~~~~~~iGiit~~di~~  333 (336)
                      .++++.++++.|...  +...+||++..|+.+|.+++.|+..
T Consensus       244 ~~~~v~~al~~m~~~--~is~lpvV~~~g~~v~~~s~~Dv~~  283 (381)
T KOG1764|consen  244 EDTPVIEALKIMSER--RISALPVVDENGKKVGNYSRFDVIH  283 (381)
T ss_pred             CCCcHHHHHHHHHhc--CcCcceEEcCCCceecceehhhhhh
Confidence            999999999999999  9999999999999999999999865

>cd04640 CBS_pair_27 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.83  E-value=3.2e-05  Score=59.82  Aligned_cols=57  Identities=30%  Similarity=0.470  Sum_probs=46.5

Q ss_pred             hhhhhccccCCCCccc----cCCCcHHHHHHHHHhcCcceEEEEcCC-CcEEEEeeHHHHHH
Q 019775          209 FKVQDVMKPQKELPVC----KEGDLIMDQLVELTSKGCGCLLVIDEE-YHLIGTFTDGDLRR  265 (336)
Q Consensus       209 ~~v~~im~~~~~~~~~----~~~~~v~~~~~~~~~~~~~~ipVvd~~-~~~~G~it~~dl~~  265 (336)
                      .+++++|.+....+.+    .+++++.++++.|.+++.+.+||+|++ |+++|+||.+|+..
T Consensus        64 ~~v~~im~~~~~~~~~~~~~~~~~~l~~~l~~m~~~~~~~lpVvd~~~~~~~G~it~~di~~  125 (126)
T cd04640          64 LTVADVMTPKEDLKALDLEELENASVGDVVETLKASGRQHALVVDREHHQIRGIISTSDIAR  125 (126)
T ss_pred             eEHHHhcCchhhhccccHHHhccCcHHHHHHHHHHCCCceEEEEECCCCEEEEEEeHHHHhh
Confidence            4577889765432233    368899999999999999999999986 79999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein

Probab=97.82  E-value=0.00011  Score=67.93  Aligned_cols=176  Identities=10%  Similarity=0.095  Sum_probs=106.1

Q ss_pred             HHHHHHHHHHHH-cCCeEEEEeCCCCCccccccCEEEEcCCCcccCCCCCCChhHHHHHHHHHHHHHHHHHhhcCC-ChH
Q 019775          115 EELLKVVPCAKA-KGAYLVSVTSVEGNALAAVCDMNVHLPVERELCPFDLAPVTSTAIQMVFGDTVAIAMMGARNL-TRD  192 (336)
Q Consensus       115 ~~~~~~~~~ak~-~g~~vi~IT~~~~s~l~~~ad~~i~~~~~~~~~~~~~~~~~s~~~~~~l~d~l~~~~~~~~~~-~~~  192 (336)
                      .++.+.+...++ .|..+|.||.. ...+.++||.++.+..+.-. ..  ...          +    .+...... -..
T Consensus       201 ~~l~~~L~~l~~~~~~TII~iTHd-l~e~~~l~DrI~vl~~G~iv-~~--g~~----------~----ei~~~p~~~~~~  262 (382)
T TIGR03415       201 TQLQDELLELQAKLNKTIIFVSHD-LDEALKIGNRIAIMEGGRII-QH--GTP----------E----EIVLNPANDYVA  262 (382)
T ss_pred             HHHHHHHHHHHHhcCCEEEEEeCC-HHHHHHhCCEEEEEECCEEE-Ee--cCH----------H----HHhhCcchHHHH
Confidence            345666655554 47777777764 55667899999888665331 00  110          0    01111000 011


Q ss_pred             HHhhcCCCCchhhhhhhhhhhccccCCCCccccCCCcHHHHHHHHHhcCcceEEEEcCCCcEEEEeeHHHHHHHHHhcCC
Q 019775          193 EYAANHPAGRIGKSLIFKVQDVMKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRRTLKASGE  272 (336)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~it~~dl~~~~~~~~~  272 (336)
                      .+..     .......++++++|.+...  ....+ .. .++..   ++.+.++|+|+     |+++..+......... 
T Consensus       263 ~~~~-----~~~~~~~l~a~~~m~~~~~--~~~~~-~~-~~~~~---~~~~~~~~~~~-----~~~~~~~~~~~~~~~~-  324 (382)
T TIGR03415       263 DFVA-----HTNPLNVLTARSLMRPLTD--LEHVD-GG-WCVSD---RRDTWLFTIDK-----QVRRRDAKLPVQAWAA-  324 (382)
T ss_pred             HHhc-----ccCcccceeHHHHhccccc--ccccC-cc-hhhhh---cccceeEeecc-----ceecccchHhHhhccc-
Confidence            1211     1122334588899966432  22222 22 33333   67888999985     8888877665433211 


Q ss_pred             chhhhhHhhhcCCCCeeeCCCccHHHHHHHhcCCCCCccEeEEEeCCCcEEEEEehhhHhhc
Q 019775          273 GIFKLTVGEMCNRSPRTIGPDAMAVEAMQKMESPPSPVQFLPVINRQNILIGIVTLHGLVSA  334 (336)
Q Consensus       273 ~~~~~~i~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~l~Vv~~~~~~iGiit~~di~~~  334 (336)
                         ...+.+ +......+++++++.+++..+.+.   ...++|+|+ |+++|+|++.+++.+
T Consensus       325 ---~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~v~~~-~~~~g~~~~~~~~~~  378 (382)
T TIGR03415       325 ---EQEVES-LEAAPTVINPDTLMRDVLAARHRT---GGAILLVEN-GRIVGVIGDDNIYHA  378 (382)
T ss_pred             ---ccchhh-hcccCcccCCCCcHHHHHHHHhcC---CCCeEEeeC-CeEEEEEeHHHHHHH
Confidence               223555 455567899999999999998876   346889987 999999999999875

Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.

>cd04604 CBS_pair_KpsF_GutQ_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with KpsF/GutQ domains in the API [A5P (D-arabinose 5-phosphate) isomerase] protein

Probab=97.82  E-value=4.6e-05  Score=57.46  Aligned_cols=54  Identities=24%  Similarity=0.274  Sum_probs=48.2

Q ss_pred             hhhhccccCCCCccccCCCcHHHHHHHHHhcCcceEEEEcCCCcEEEEeeHHHHHH
Q 019775          210 KVQDVMKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRR  265 (336)
Q Consensus       210 ~v~~im~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~it~~dl~~  265 (336)
                      ++.++|.+.  ++++++++++.++++.|.+.+...+||++++++++|+|+..||..
T Consensus        60 ~v~~~~~~~--~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~iG~it~~di~~  113 (114)
T cd04604          60 PVADVMTRN--PKTIDPDALAAEALELMEENKITALPVVDDNGRPVGVLHIHDLLR  113 (114)
T ss_pred             CHHHhhccC--CeEECCCCcHHHHHHHHHHcCCCEEEEECCCCCEEEEEEHHHhhc
Confidence            577888876  458999999999999999999999999998899999999999864

These APIs catalyze the conversion of the pentose pathway intermediate D-ribulose 5-phosphate into A5P, a precursor of 3-deoxy-D-manno-octulosonate, which is an integral carbohydrate component of various glycolipids coating the surface of the outer membrane of Gram-negative bacteria, including lipopolysaccharide and many group 2 K-antigen capsules. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other funct

>cd04610 CBS_pair_ParBc_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a ParBc (ParB-like nuclease) domain downstream

Probab=97.82  E-value=4.7e-05  Score=56.71  Aligned_cols=54  Identities=31%  Similarity=0.414  Sum_probs=47.9

Q ss_pred             hhhhccccCCCCccccCCCcHHHHHHHHHhcCcceEEEEcCCCcEEEEeeHHHHHH
Q 019775          210 KVQDVMKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRR  265 (336)
Q Consensus       210 ~v~~im~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~it~~dl~~  265 (336)
                      +++++|.+.  .+++.+++++.++++.|.+++...+||++++|+++|+++..+++.
T Consensus        53 ~~~~~~~~~--~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~g~~~Gvi~~~di~~  106 (107)
T cd04610          53 TVEEIMSKD--LVVAVPEMDIMDAARVMFRTGISKLPVVDENNNLVGIITNTDVIR  106 (107)
T ss_pred             cHHHhCCCC--CeEECCCCCHHHHHHHHHHhCCCeEeEECCCCeEEEEEEHHHhhc
Confidence            577888766  458999999999999999999999999998899999999999864

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04596 CBS_pair_DRTGG_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream

Probab=97.81  E-value=4.7e-05  Score=57.03  Aligned_cols=54  Identities=17%  Similarity=0.258  Sum_probs=48.2

Q ss_pred             hhhhccccCCCCccccCCCcHHHHHHHHHhcCcceEEEEcCCCcEEEEeeHHHHHH
Q 019775          210 KVQDVMKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRR  265 (336)
Q Consensus       210 ~v~~im~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~it~~dl~~  265 (336)
                      +++++|.+.  +++++++.++.++.+.|.+++...+||++++|+++|+++..++..
T Consensus        54 ~v~~~~~~~--~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~G~it~~di~~  107 (108)
T cd04596          54 TIEKVMTKN--PITVNPKTSVASVAHMMIWEGIEMLPVVDDNKKLLGIISRQDVLK  107 (108)
T ss_pred             cHHHHhcCC--CeEECCCCCHHHHHHHHHHcCCCeeeEEcCCCCEEEEEEHHHhhc
Confidence            577888766  458999999999999999999999999998899999999999864

The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04639 CBS_pair_26 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.80  E-value=5.3e-05  Score=56.91  Aligned_cols=54  Identities=20%  Similarity=0.299  Sum_probs=47.6

Q ss_pred             hhhhccccCCCCccccCCCcHHHHHHHHHhcCcceEEEEcCCCcEEEEeeHHHHHH
Q 019775          210 KVQDVMKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRR  265 (336)
Q Consensus       210 ~v~~im~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~it~~dl~~  265 (336)
                      ++.++|...  ++.++++.++.++++.|.+++...+||++++|+++|+++.+|+..
T Consensus        57 ~v~~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~G~it~~dl~~  110 (111)
T cd04639          57 PVRGVMRRD--FPTVSPSATLDAVLRLMQQGGAPAVPVVDGSGRLVGLVTLENVGE  110 (111)
T ss_pred             cHHHHhcCC--CcEECCCCcHHHHHHHHHhcCCceeeEEcCCCCEEEEEEHHHhhc
Confidence            466788765  568999999999999999999999999997799999999999864

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04602 CBS_pair_IMPDH_2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein

Probab=97.80  E-value=4.4e-05  Score=57.81  Aligned_cols=54  Identities=20%  Similarity=0.357  Sum_probs=46.4

Q ss_pred             hhhhccccCCCCccc--cCCCcHHHHHHHHHhcCcceEEEEcCCCcEEEEeeHHHHHH
Q 019775          210 KVQDVMKPQKELPVC--KEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRR  265 (336)
Q Consensus       210 ~v~~im~~~~~~~~~--~~~~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~it~~dl~~  265 (336)
                      +++++|.+...  .+  +++.++.++++.|.+++...+||++++|+++|+||.+++..
T Consensus        58 ~v~~~~~~~~~--~~~~~~~~~l~~~l~~~~~~~~~~~pVv~~~~~~~Gvit~~di~~  113 (114)
T cd04602          58 PLSEVMTPREV--LVVAPTGITLEEANEILRESKKGKLPIVNDDGELVALVTRSDLKK  113 (114)
T ss_pred             CHHHhcCCCce--EEECCCCCCHHHHHHHHHhcCCCceeEECCCCeEEEEEEHHHhhc
Confidence            46788887644  55  44999999999999999999999998899999999999864

IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentos

>cd04583 CBS_pair_ABC_OpuCA_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA

Probab=97.79  E-value=5e-05  Score=56.76  Aligned_cols=54  Identities=22%  Similarity=0.310  Sum_probs=47.6

Q ss_pred             hhhhccccCCCCccccCCCcHHHHHHHHHhcCcceEEEEcCCCcEEEEeeHHHHHH
Q 019775          210 KVQDVMKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRR  265 (336)
Q Consensus       210 ~v~~im~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~it~~dl~~  265 (336)
                      ++.++|.+.  +++++++.++.++++.|.+++...+||++++|+++|+++.+++..
T Consensus        55 ~v~~~~~~~--~~~v~~~~~~~~~~~~~~~~~~~~~~vv~~~g~~~Gvit~~~l~~  108 (109)
T cd04583          55 SLEDIMLED--VFTVQPDASLRDVLGLVLKRGPKYVPVVDEDGKLVGLITRSSLVD  108 (109)
T ss_pred             cHhHhhcCC--ceEECCCCcHHHHHHHHHHcCCceeeEECCCCeEEEEEehHHhhc
Confidence            356778765  458999999999999999999999999998899999999999864

OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyz

>PRK07107 inosine 5-monophosphate dehydrogenase; Validated

Probab=97.79  E-value=4.2e-05  Score=73.01  Aligned_cols=59  Identities=20%  Similarity=0.227  Sum_probs=53.3

Q ss_pred             hhhhhccccCCCCccccCCCcHHHHHHHHHhcCcceEEEEcCCCcEEEEeeHHHHHHHH
Q 019775          209 FKVQDVMKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRRTL  267 (336)
Q Consensus       209 ~~v~~im~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~it~~dl~~~~  267 (336)
                      .+|+++|.+.+.+++++++.++.+++++|.+++.+.+||+|++++++|+||.+|++...
T Consensus       161 ~~V~dIMt~~~~~itv~~d~~l~eAl~lM~e~~i~~LPVVD~~g~LvGIIT~~Dilk~~  219 (502)
T PRK07107        161 TKVKDFMTPFEKLVTANEGTTLKEANDIIWDHKLNTLPIVDKNGNLVYLVFRKDYDSHK  219 (502)
T ss_pred             CCHHHHhCCCCCeEEECCCCcHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEhHHHHhcc
Confidence            46889999754567899999999999999999999999999889999999999999854

>cd04585 CBS_pair_ACT_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria

Probab=97.79  E-value=5.3e-05  Score=57.77  Aligned_cols=55  Identities=24%  Similarity=0.332  Sum_probs=48.7

Q ss_pred             hhhhhccccCCCCccccCCCcHHHHHHHHHhcCcceEEEEcCCCcEEEEeeHHHHHH
Q 019775          209 FKVQDVMKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRR  265 (336)
Q Consensus       209 ~~v~~im~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~it~~dl~~  265 (336)
                      .++.++|.+.  ++++++++++.+++..|.+.+.+.+||++++|+++|+||..|+..
T Consensus        67 ~~~~~~~~~~--~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~Gvvt~~di~~  121 (122)
T cd04585          67 IKVSDIMTRD--PITVSPDASVEEAAELMLERKISGLPVVDDQGRLVGIITESDLFR  121 (122)
T ss_pred             cCHHHhccCC--CeEeCCCCcHHHHHHHHHHcCCCceeEECCCCcEEEEEEHHHhhh
Confidence            3567788775  558999999999999999999999999998799999999999875

Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The i

>cd04630 CBS_pair_17 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.79  E-value=5e-05  Score=57.49  Aligned_cols=54  Identities=17%  Similarity=0.091  Sum_probs=47.8

Q ss_pred             hhhhhccccCCCCccccCCCcHHHHHHHHHhcCcceEEEEcCCCcEEEEeeHHHHHH
Q 019775          209 FKVQDVMKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRR  265 (336)
Q Consensus       209 ~~v~~im~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~it~~dl~~  265 (336)
                      .++.++|...  ++++++++++.++++.|.+.+...+||+|+ |+++|+|+..|+..
T Consensus        60 ~~v~~~~~~~--~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~-~~~~Gvi~~~dl~~  113 (114)
T cd04630          60 VNVYEIMTKP--LISVSPDMDIKYCARLMERTNIRRAPVVEN-NELIGIISLTDIFL  113 (114)
T ss_pred             cCHHHHhcCC--CeeECCCCCHHHHHHHHHHcCCCEeeEeeC-CEEEEEEEHHHhhc
Confidence            3677888765  569999999999999999999999999986 99999999999874

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04641 CBS_pair_28 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.78  E-value=5.2e-05  Score=57.99  Aligned_cols=52  Identities=15%  Similarity=0.208  Sum_probs=45.1

Q ss_pred             hhccccCCCCccccCCCcHHHHHHHHHhcCcceEEEEcCCCcEEEEeeHHHHHH
Q 019775          212 QDVMKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRR  265 (336)
Q Consensus       212 ~~im~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~it~~dl~~  265 (336)
                      ..+|..+  ++++++++++.++++.|.+++.+.+||+|++|+++|+||.+|++.
T Consensus        68 ~~~~~~~--~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~~~~~Givt~~di~~  119 (120)
T cd04641          68 RSQDFEG--VRTCSPDDCLRTIFDLIVKARVHRLVVVDENKRVEGIISLSDILQ  119 (120)
T ss_pred             cccCCCC--CeEEcCCCcHHHHHHHHHhcCccEEEEECCCCCEEEEEEHHHhhc
Confidence            3445444  458999999999999999999999999998899999999999874

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed

Probab=97.77  E-value=6e-05  Score=72.19  Aligned_cols=114  Identities=21%  Similarity=0.233  Sum_probs=78.1

Q ss_pred             hhhhccccCCCCccccCCCcHHHHHHHHHhcCcceEEEEcCCCcEEEEeeHHHHHHHHHhcCC-ch--hhhhHhhhcCCC
Q 019775          210 KVQDVMKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRRTLKASGE-GI--FKLTVGEMCNRS  286 (336)
Q Consensus       210 ~v~~im~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~it~~dl~~~~~~~~~-~~--~~~~i~~~~~~~  286 (336)
                      +++++|.+. .+++++++.++.++++.|.+++.+.+||+|++|+++|+||.+||+..+..... ..  .+..+...|.. 
T Consensus       148 ~V~dim~~~-~~v~v~~~~sl~eal~~m~~~~~~~lpVVDe~g~lvGiIT~~DLl~~~~~p~a~~d~~g~l~V~aai~~-  225 (486)
T PRK05567        148 PVSEVMTKE-RLVTVPEGTTLEEALELLHEHRIEKLPVVDDNGRLKGLITVKDIEKAEEFPNACKDEQGRLRVGAAVGV-  225 (486)
T ss_pred             cHHHHcCCC-CCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHhhhhhhCCCcccccCCCEEEEeeccc-
Confidence            577888732 25689999999999999999999999999999999999999999987643110 00  01122333322 


Q ss_pred             CeeeCCCccHHHHHHHhcCCCCCccEeEEEeC-CCcEEEEEehhhHhhc
Q 019775          287 PRTIGPDAMAVEAMQKMESPPSPVQFLPVINR-QNILIGIVTLHGLVSA  334 (336)
Q Consensus       287 ~~~v~~~~~l~~~~~~~~~~~~~~~~l~Vv~~-~~~~iGiit~~di~~~  334 (336)
                          .+ .+ .+..+.|.+.  +.+. +|+|. +|+..|+++.-+.++.
T Consensus       226 ----~~-~~-~e~a~~L~~a--gvdv-ivvD~a~g~~~~vl~~i~~i~~  265 (486)
T PRK05567        226 ----GA-DN-EERAEALVEA--GVDV-LVVDTAHGHSEGVLDRVREIKA  265 (486)
T ss_pred             ----Cc-ch-HHHHHHHHHh--CCCE-EEEECCCCcchhHHHHHHHHHh
Confidence                22 22 5556666666  6775 46664 5777777776665553

>cd04582 CBS_pair_ABC_OpuCA_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA

Probab=97.77  E-value=6.1e-05  Score=56.05  Aligned_cols=53  Identities=17%  Similarity=0.186  Sum_probs=46.6

Q ss_pred             hhhccccCCCCccccCCCcHHHHHHHHHhcCcceEEEEcCCCcEEEEeeHHHHHH
Q 019775          211 VQDVMKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRR  265 (336)
Q Consensus       211 v~~im~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~it~~dl~~  265 (336)
                      +.++|.+.  .+++.+++++.++++.|.+++...+||+|++|+++|+++.+++.+
T Consensus        53 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~Gvi~~~~l~~  105 (106)
T cd04582          53 CGDHAEPF--KVTVSVDDDLRIVLSRMFAHDMSWLPCVDEDGRYVGEVTQRSIAD  105 (106)
T ss_pred             hhhhcccC--CEEECCCCCHHHHHHHHHHCCCCeeeEECCCCcEEEEEEHHHhhc
Confidence            56777765  347899999999999999999999999998899999999999864

OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzi

>smart00116 CBS Domain in cystathionine beta-synthase and other proteins

Probab=97.77  E-value=7.6e-05  Score=46.38  Aligned_cols=47  Identities=28%  Similarity=0.366  Sum_probs=41.9

Q ss_pred             CccccCCCcHHHHHHHHHhcCcceEEEEcCCCcEEEEeeHHHHHHHH
Q 019775          221 LPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRRTL  267 (336)
Q Consensus       221 ~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~it~~dl~~~~  267 (336)
                      ++++.++.++.++.+.|.+.+...+||++++++++|+++..++...+
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g~i~~~~l~~~~   48 (49)
T smart00116        2 VVTVSPDTTLEEALELLREHGIRRLPVVDEEGRLVGIVTRRDIIKAL   48 (49)
T ss_pred             ceEecCCCcHHHHHHHHHHhCCCcccEECCCCeEEEEEEHHHHHHhh
Confidence            34788999999999999999999999999888999999999987653

Domain present in all 3 forms of cellular life. Present in two copies in inosine monophosphate dehydrogenase, of which one is disordered in the crystal structure [3]. A number of disease states are associated with CBS-containing proteins including homocystinuria, Becker's and Thomsen disease.

>cd04615 CBS_pair_2 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.75  E-value=6.1e-05  Score=56.78  Aligned_cols=54  Identities=24%  Similarity=0.325  Sum_probs=47.5

Q ss_pred             hhhhccccCCCCccccCCCcHHHHHHHHHhcCcceEEEEcCCCcEEEEeeHHHHHH
Q 019775          210 KVQDVMKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRR  265 (336)
Q Consensus       210 ~v~~im~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~it~~dl~~  265 (336)
                      ++.++|.+.  ++++++++++.++++.|.+.+...+||++++|+++|+++..++..
T Consensus        59 ~i~~~~~~~--~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~~g~~~Gvvt~~dl~~  112 (113)
T cd04615          59 KVREVMNSP--VITIDANDSIAKARWLMSNNNISRLPVLDDKGKVGGIVTEDDILR  112 (113)
T ss_pred             cHHHhccCC--ceEECCCCcHHHHHHHHHHcCCCeeeEECCCCeEEEEEEHHHhhc
Confidence            466778765  458999999999999999999999999998899999999999864

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04611 CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with a PAS domain, a GGDEF (DiGuanylate-Cyclase (DGC) domain, and a DUF1 domain downstream

Probab=97.75  E-value=7.3e-05  Score=56.05  Aligned_cols=54  Identities=24%  Similarity=0.378  Sum_probs=47.5

Q ss_pred             hhhhccccCCCCccccCCCcHHHHHHHHHhcCcceEEEEcCCCcEEEEeeHHHHHH
Q 019775          210 KVQDVMKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRR  265 (336)
Q Consensus       210 ~v~~im~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~it~~dl~~  265 (336)
                      +++++|.+.  ++.+++++++.++++.|.+.+...+||+|++|+++|+++.+++.+
T Consensus        57 ~v~~~~~~~--~~~~~~~~~l~~~l~~~~~~~~~~~~Vv~~~~~~~Gvi~~~di~~  110 (111)
T cd04611          57 PVGEVMSSP--LLTVPADTSLYDARQLMREHGIRHLVVVDDDGELLGLLSQTDLLQ  110 (111)
T ss_pred             CHHHhcCCC--ceEECCCCCHHHHHHHHHHcCCeEEEEECCCCcEEEEEEhHHhhc
Confidence            567788765  558999999999999999999999999998899999999999864

PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CB

>cd04587 CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain

Probab=97.75  E-value=5e-05  Score=57.22  Aligned_cols=54  Identities=19%  Similarity=0.268  Sum_probs=47.9

Q ss_pred             hhhhccccCCCCccccCCCcHHHHHHHHHhcCcceEEEEcCCCcEEEEeeHHHHHH
Q 019775          210 KVQDVMKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRR  265 (336)
Q Consensus       210 ~v~~im~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~it~~dl~~  265 (336)
                      ++.++|.+.  .+++++++++.++++.|.+++...+||++++++++|+|+..|++.
T Consensus        59 ~v~~i~~~~--~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~~~~~~Gvvs~~dl~~  112 (113)
T cd04587          59 LVERVMTPN--PVCATSDTPVLEALHLMVQGKFRHLPVVDKSGQVVGLLDVTKLTH  112 (113)
T ss_pred             CHHHhcCCC--CeEEcCCCCHHHHHHHHHHcCCCcccEECCCCCEEEEEEHHHhcc
Confidence            577888776  458999999999999999999999999998899999999999864

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pai

>cd04625 CBS_pair_12 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.74  E-value=6.4e-05  Score=56.54  Aligned_cols=53  Identities=23%  Similarity=0.291  Sum_probs=47.1

Q ss_pred             hhhhccccCCCCccccCCCcHHHHHHHHHhcCcceEEEEcCCCcEEEEeeHHHHHH
Q 019775          210 KVQDVMKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRR  265 (336)
Q Consensus       210 ~v~~im~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~it~~dl~~  265 (336)
                      ++.++|.+.  ++++++++++.++++.|.+++...+||++ +|+++|++|.+++..
T Consensus        59 ~v~~~~~~~--~~~v~~~~~l~~a~~~m~~~~~~~l~Vv~-~~~~~Gvvt~~dl~~  111 (112)
T cd04625          59 TVRAIMNPE--PIVASPDDSIDEVRRLMVERHLRYLPVLD-GGTLLGVISFHDVAK  111 (112)
T ss_pred             CHHHHhCCC--CeEECCCCCHHHHHHHHHHcCCCeeeEEE-CCEEEEEEEHHHhhc
Confidence            577888776  45899999999999999999999999998 589999999999864

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>PRK14095 pgi glucose-6-phosphate isomerase; Provisional

Probab=97.74  E-value=0.00068  Score=64.75  Aligned_cols=106  Identities=20%  Similarity=0.264  Sum_probs=70.7

Q ss_pred             hHHHHHHHHHHc----------CCCeEEEEeccchHHHHHHHHHHHH---hcCCeeeecC--CccccccccCCCC-CCcE
Q 019775           41 PHTLTFTQTLLK----------CRGTIFFTGVGKSGFVANKISQTLI---SLGIKSGFLN--PLDALHGDIGILS-SDDI  104 (336)
Q Consensus        41 ~~i~~~~~~i~~----------a~~~I~i~G~G~s~~~a~~~~~~l~---~~g~~~~~~~--~~~~~~~~~~~~~-~~dl  104 (336)
                      +.+.++++.+.+          - +.|+++|.|.|+.=...+...|.   ..+.+++++.  +...+...+..++ ++.+
T Consensus       129 ~~~~~f~~~vr~g~~~g~tg~~~-~~VV~IGIGGS~LGp~av~~AL~~~~~~~~~l~fvsNvDp~~~~e~L~~ldpe~TL  207 (533)
T PRK14095        129 ERLAEFLKKVRSGEIKNSNGKKF-TTVVQIGIGGSDLGPKALYLALKNYAKKDKRVHFISNVDPDDAAEVLSEIDLAKTL  207 (533)
T ss_pred             HHHHHHHHHHHcCCccCCCCCcc-ceEEEEecCcchHhHHHHHHHHHhhccCCceEEEECCCCHHHHHHHHhcCCcccEE
Confidence            466777777764          3 58999999999833333333222   2344666655  3444444444343 4678


Q ss_pred             EEEEeCCCCcHHHHHH----HHHHHHcC----CeEEEEeCCCCCccccccCE
Q 019775          105 LVMFSKSGNTEELLKV----VPCAKAKG----AYLVSVTSVEGNALAAVCDM  148 (336)
Q Consensus       105 vi~iS~sG~~~~~~~~----~~~ak~~g----~~vi~IT~~~~s~l~~~ad~  148 (336)
                      +|++|.||.|.|+...    .+.+++.|    ..+|+||+ ..+++++..++
T Consensus       208 fiviSKSGtT~ETl~n~~~~r~wl~~~G~~~~~h~VaVT~-~~s~l~~~~~~  258 (533)
T PRK14095        208 FIVVSKSGTTLETAANEEFVRDALKKAGLDYKKHFIAVTS-EGSPMDDESGY  258 (533)
T ss_pred             EEEEeCCCCCHHHHHHHHHHHHHHHHcCccccceEEEEEC-CchHHHhhcCc
Confidence            9999999999999998    44555556    58999998 57778776666

>smart00116 CBS Domain in cystathionine beta-synthase and other proteins

Probab=97.73  E-value=7.1e-05  Score=46.52  Aligned_cols=46  Identities=30%  Similarity=0.528  Sum_probs=41.2

Q ss_pred             CeeeCCCccHHHHHHHhcCCCCCccEeEEEeCCCcEEEEEehhhHhhc
Q 019775          287 PRTIGPDAMAVEAMQKMESPPSPVQFLPVINRQNILIGIVTLHGLVSA  334 (336)
Q Consensus       287 ~~~v~~~~~l~~~~~~~~~~~~~~~~l~Vv~~~~~~iGiit~~di~~~  334 (336)
                      +..+.+++++.++++.|.+.  +...+||++++++++|+++..++.+.
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~--~~~~~~v~~~~~~~~g~i~~~~l~~~   47 (49)
T smart00116        2 VVTVSPDTTLEEALELLREH--GIRRLPVVDEEGRLVGIVTRRDIIKA   47 (49)
T ss_pred             ceEecCCCcHHHHHHHHHHh--CCCcccEECCCCeEEEEEEHHHHHHh
Confidence            46788999999999999988  89999999988899999999998764

Domain present in all 3 forms of cellular life. Present in two copies in inosine monophosphate dehydrogenase, of which one is disordered in the crystal structure [3]. A number of disease states are associated with CBS-containing proteins including homocystinuria, Becker's and Thomsen disease.

>cd04635 CBS_pair_22 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.70  E-value=8.1e-05  Score=56.93  Aligned_cols=55  Identities=20%  Similarity=0.288  Sum_probs=48.3

Q ss_pred             hhhhhccccCCCCccccCCCcHHHHHHHHHhcCcceEEEEcCCCcEEEEeeHHHHHH
Q 019775          209 FKVQDVMKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRR  265 (336)
Q Consensus       209 ~~v~~im~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~it~~dl~~  265 (336)
                      .++.++|.+.  ++++++++++.++++.|.+++.+.+||++++|+++|+++..|+..
T Consensus        67 ~~~~~~~~~~--~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~~g~~~Gvit~~dl~~  121 (122)
T cd04635          67 PTVEKIMSTP--VYSVTPDDSIATAVELMLEHDIGRLPVVNEKDQLVGIVDRHDVLK  121 (122)
T ss_pred             CcHHHHhcCC--CeeECCCCCHHHHHHHHHHcCCCeeeEEcCCCcEEEEEEhHHhhc
Confidence            3567788765  458999999999999999999999999998899999999999864

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>PRK07807 inosine 5-monophosphate dehydrogenase; Validated

Probab=97.70  E-value=0.00018  Score=68.29  Aligned_cols=58  Identities=22%  Similarity=0.222  Sum_probs=52.7

Q ss_pred             hhhhccccCCCCccccCCCcHHHHHHHHHhcCcceEEEEcCCCcEEEEeeHHHHHHHHHh
Q 019775          210 KVQDVMKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRRTLKA  269 (336)
Q Consensus       210 ~v~~im~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~it~~dl~~~~~~  269 (336)
                      +++++|.+.  +++++++.++.+++++|.+++...+||+|++++++|+||.+||......
T Consensus       149 ~V~diMt~~--~itV~~d~sL~eAl~lM~~~~i~~LPVVD~~g~lvGIIT~~DIl~~~~~  206 (479)
T PRK07807        149 QVRDVMSTD--LVTLPAGTDPREAFDLLEAARVKLAPVVDADGRLVGVLTRTGALRATIY  206 (479)
T ss_pred             CHHHhccCC--ceEECCCCcHHHHHHHHHhcCCCEEEEEcCCCeEEEEEEHHHHHHHhhC
Confidence            578899876  5699999999999999999999999999988999999999999987654

>cd04614 CBS_pair_1 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.70  E-value=7.9e-05  Score=54.71  Aligned_cols=45  Identities=16%  Similarity=0.250  Sum_probs=41.5

Q ss_pred             CccccCCCcHHHHHHHHHhcCcceEEEEcCCCcEEEEeeHHHHHH
Q 019775          221 LPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRR  265 (336)
Q Consensus       221 ~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~it~~dl~~  265 (336)
                      ++++++++++.+++++|.+++.+.+||++++|+++|+++.+++..
T Consensus        51 ~~~v~~~~~l~~a~~~m~~~~~~~lpVv~~~~~~~Giit~~di~~   95 (96)
T cd04614          51 VVTATKRTTVSECAQKMKRNRIEQIPIINGNDKLIGLLRDHDLLK   95 (96)
T ss_pred             cEEecCCCCHHHHHHHHHHhCCCeeeEECCCCcEEEEEEHHHhhc
Confidence            458999999999999999999999999998789999999999864

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04631 CBS_pair_18 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.70  E-value=8.6e-05  Score=57.04  Aligned_cols=55  Identities=27%  Similarity=0.364  Sum_probs=48.5

Q ss_pred             hhhhhccccCCCCccccCCCcHHHHHHHHHhcCcceEEEEcCCCcEEEEeeHHHHHH
Q 019775          209 FKVQDVMKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRR  265 (336)
Q Consensus       209 ~~v~~im~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~it~~dl~~  265 (336)
                      .++.++|.+.  ++++++++++.++++.|.+.+.+.+||++++|+++|+|+..|+..
T Consensus        70 ~~~~~~~~~~--~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~~~Gvit~~di~~  124 (125)
T cd04631          70 EPVRSIMTRN--VITITPDDSIKDAAELMLEKRVGGLPVVDDDGKLVGIVTERDLLK  124 (125)
T ss_pred             cCHHHHhcCC--ceEeCCCCcHHHHHHHHHHcCCceEEEEcCCCcEEEEEEHHHhhc
Confidence            3577788765  569999999999999999999999999997789999999999874

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04593 CBS_pair_EriC_assoc_bac_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in bacteria and archaea

Probab=97.69  E-value=9.1e-05  Score=56.08  Aligned_cols=53  Identities=23%  Similarity=0.353  Sum_probs=46.9

Q ss_pred             hhhccccCCCCccccCCCcHHHHHHHHHhcCcceEEEEcCC--CcEEEEeeHHHHHH
Q 019775          211 VQDVMKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEE--YHLIGTFTDGDLRR  265 (336)
Q Consensus       211 v~~im~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~--~~~~G~it~~dl~~  265 (336)
                      ++++|...  ++++.+++++.+++++|.+++...+||+|++  |+++|+|+.+++..
T Consensus        60 ~~~~~~~~--~~~v~~~~~l~~~l~~~~~~~~~~~~Vvd~~~~~~~~Gvit~~di~~  114 (115)
T cd04593          60 VDEVATPP--LLTVHPDEPLAHALDRMASRGLRQLPVVDRGNPGQVLGLLTRENVLL  114 (115)
T ss_pred             HHHhccCC--ceEECCCCCHHHHHHHHHHcCCceeeEEeCCCCCeEEEEEEhHHhhc
Confidence            56777765  5589999999999999999999999999977  79999999999864

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS d

>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein

Probab=97.69  E-value=0.00026  Score=67.25  Aligned_cols=58  Identities=17%  Similarity=0.141  Sum_probs=52.7

Q ss_pred             hhhhccccCCCCccccCCCcHHHHHHHHHhcCcceEEEEcCCCcEEEEeeHHHHHHHHHh
Q 019775          210 KVQDVMKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRRTLKA  269 (336)
Q Consensus       210 ~v~~im~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~it~~dl~~~~~~  269 (336)
                      +++++|.++  +++++++.++.+++++|.+++...+||+|++|+++|+||.+||.+....
T Consensus       147 ~V~dIMt~~--litv~~~~sL~eAl~lM~~~~i~~LPVVD~~g~LvGIIT~~DLl~~~~~  204 (475)
T TIGR01303       147 QVRDIMSTD--LVTAPADTEPRKAFDLLEHAPRDVAPLVDADGTLAGILTRTGALRATIY  204 (475)
T ss_pred             CHHHHccCC--ceEeCCCCcHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHHHHhC
Confidence            578999876  5699999999999999999999999999988999999999999986654

This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.

>cd04803 CBS_pair_15 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.69  E-value=9.3e-05  Score=56.60  Aligned_cols=56  Identities=25%  Similarity=0.396  Sum_probs=49.0

Q ss_pred             hhhhhhccccCCCCccccCCCcHHHHHHHHHhcCcceEEEEcCCCcEEEEeeHHHHHH
Q 019775          208 IFKVQDVMKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRR  265 (336)
Q Consensus       208 ~~~v~~im~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~it~~dl~~  265 (336)
                      ..++.++|...  ++++++++++.++++.|.+.+...+||++++|+++|+++..|+..
T Consensus        66 ~~~v~~~~~~~--~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~Gvit~~dl~~  121 (122)
T cd04803          66 DVPVAEVMKTD--VLTVTPDTPLREAAEIMVENKIGCLPVVDDKGTLVGIITRSDFLR  121 (122)
T ss_pred             CcCHHHhhCCC--CeEeCCCCcHHHHHHHHHHcCCCeEEEEcCCCCEEEEEEHHHhhc
Confidence            34677888776  458999999999999999999999999998789999999999874

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04590 CBS_pair_CorC_HlyC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the CorC_HlyC domain

Probab=97.68  E-value=8.9e-05  Score=55.67  Aligned_cols=53  Identities=23%  Similarity=0.280  Sum_probs=45.4

Q ss_pred             hhhhccccCCCCccccCCCcHHHHHHHHHhcCcceEEEEcCCCcEEEEeeHHHHHH
Q 019775          210 KVQDVMKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRR  265 (336)
Q Consensus       210 ~v~~im~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~it~~dl~~  265 (336)
                      .+.++|.+   ++.+.+++++.+++++|.+++.+.+||++++|+++|++|.+|+..
T Consensus        58 ~~~~~~~~---~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~Gvit~~di~~  110 (111)
T cd04590          58 DLRDLLRP---PLFVPESTPLDDLLEEMRKERSHMAIVVDEYGGTAGLVTLEDILE  110 (111)
T ss_pred             CHHHHhcC---CeecCCCCcHHHHHHHHHhcCCcEEEEEECCCCEEEEeEHHHhhc
Confidence            34455543   458999999999999999999999999998899999999999863

CorC_HlyC is a transporter associated domain. This small domain is found in Na+/H+ antiporters, in proteins involved in magnesium and cobalt efflux, and in association with some proteins of unknown function. The function of the CorC_HlyC domain is uncertain but it might be involved in modulating transport of ion substrates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role,

>cd04621 CBS_pair_8 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.68  E-value=0.00011  Score=57.80  Aligned_cols=55  Identities=20%  Similarity=0.328  Sum_probs=48.6

Q ss_pred             hhhhhhccccCCCCccccCCCcHHHHHHHHHhcCcceEEEEcCCCcEEEEeeHHHHHH
Q 019775          208 IFKVQDVMKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRR  265 (336)
Q Consensus       208 ~~~v~~im~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~it~~dl~~  265 (336)
                      ..+++++|.+.  ++.+.+++++.++++.|.+.+...+||+++ |+++|+|+..++..
T Consensus        80 ~~~v~~~~~~~--~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~-~~~~Gvit~~di~~  134 (135)
T cd04621          80 PLVAEDIMTEE--IITVSPNDDVVDAAKLMLEANISGLPVVDN-DNIVGVITKTDICR  134 (135)
T ss_pred             cccHHHhcCCC--CeEECCCCCHHHHHHHHHHcCCCEEEEEeC-CEEEEEEEHHHHhh
Confidence            44788999876  458999999999999999999999999986 89999999999874

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04588 CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the archaeal CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain

Probab=97.67  E-value=0.0001  Score=55.17  Aligned_cols=54  Identities=30%  Similarity=0.460  Sum_probs=47.2

Q ss_pred             hhhhccccCCCCccccCCCcHHHHHHHHHhcCcceEEEEcCCCcEEEEeeHHHHHH
Q 019775          210 KVQDVMKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRR  265 (336)
Q Consensus       210 ~v~~im~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~it~~dl~~  265 (336)
                      ++.++|.+.  ++.++++.++.++++.|.+.+...+||++++|+++|+++..|+..
T Consensus        56 ~v~~~~~~~--~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~i~~~dl~~  109 (110)
T cd04588          56 KVKDVMTKD--VITIDEDEQLYDAIRLMNKHNVGRLIVTDDEGRPVGIITRTDILR  109 (110)
T ss_pred             CHHHHhcCC--ceEECCCCCHHHHHHHHHhcCCCEEEEECCCCCEEEEEEhHHhhc
Confidence            566777765  558999999999999999999999999998899999999999863

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site.

>cd04599 CBS_pair_GGDEF_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain

Probab=97.67  E-value=9.1e-05  Score=54.94  Aligned_cols=51  Identities=22%  Similarity=0.305  Sum_probs=45.7

Q ss_pred             hhhccccCCCCccccCCCcHHHHHHHHHhcCcceEEEEcCCCcEEEEeeHHHHH
Q 019775          211 VQDVMKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLR  264 (336)
Q Consensus       211 v~~im~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~it~~dl~  264 (336)
                      +.++|.+.  .+++++++++.++++.|.+++...+||+++ |+++|++|..++.
T Consensus        53 ~~~~~~~~--~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~G~it~~~l~  103 (105)
T cd04599          53 VADAMTRE--VVTISPEASLLEAKRLMEEKKIERLPVLRE-RKLVGIITKGTIA  103 (105)
T ss_pred             HHHHccCC--CEEECCCCCHHHHHHHHHHcCCCEeeEEEC-CEEEEEEEHHHhc
Confidence            56778776  458999999999999999999999999996 9999999999986

The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>PLN02274 inosine-5'-monophosphate dehydrogenase

Probab=97.67  E-value=0.0001  Score=70.57  Aligned_cols=62  Identities=21%  Similarity=0.252  Sum_probs=55.7

Q ss_pred             hhhhhhccccCCCCccccCCCcHHHHHHHHHhcCcceEEEEcCCCcEEEEeeHHHHHHHHHh
Q 019775          208 IFKVQDVMKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRRTLKA  269 (336)
Q Consensus       208 ~~~v~~im~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~it~~dl~~~~~~  269 (336)
                      ..+|+++|.+...+++++++.++.++++.|.+++...+||+|++++++|+||++|+.+.+..
T Consensus       162 ~~~V~eIMt~~~~lvtv~~~~sL~eAl~~m~~~~~~~LPVVD~~g~LvGvITr~DIlk~~~~  223 (505)
T PLN02274        162 ETKLSEVMTSDDDLVTAPAGIDLEEAEAVLKDSKKGKLPLVNEDGELVDLVTRTDVKRVKGY  223 (505)
T ss_pred             CCcHHHHhccCCCcEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHHHhhC
Confidence            34788999987556799999999999999999999999999988999999999999988753

>cd04637 CBS_pair_24 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.66  E-value=0.00012  Score=56.10  Aligned_cols=56  Identities=23%  Similarity=0.268  Sum_probs=49.6

Q ss_pred             hhhhhhccccCCCCccccCCCcHHHHHHHHHhcCcceEEEEcCCCcEEEEeeHHHHHH
Q 019775          208 IFKVQDVMKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRR  265 (336)
Q Consensus       208 ~~~v~~im~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~it~~dl~~  265 (336)
                      ..++.++|...  ++.+++++++.++++.|.+++...+||++++++++|+++..++..
T Consensus        66 ~~~~~~~~~~~--~~~v~~~~~l~~~~~~~~~~~~~~~~vv~~~~~~~Gvit~~dll~  121 (122)
T cd04637          66 NRRAHQIMTRD--PITVSPDTPVDEASKLLLENSISCLPVVDENGQLIGIITWKDLLK  121 (122)
T ss_pred             HhHHHHhhcCC--CeeeCCCCcHHHHHHHHHHcCCCeEeEECCCCCEEEEEEHHHhhh
Confidence            34678888776  568999999999999999999999999998899999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04623 CBS_pair_10 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.66  E-value=8.8e-05  Score=55.74  Aligned_cols=54  Identities=20%  Similarity=0.330  Sum_probs=47.4

Q ss_pred             hhhhhccccCCCCccccCCCcHHHHHHHHHhcCcceEEEEcCCCcEEEEeeHHHHHH
Q 019775          209 FKVQDVMKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRR  265 (336)
Q Consensus       209 ~~v~~im~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~it~~dl~~  265 (336)
                      .++.++|.+.  +++++++.++.++++.|.+.+...+||+++ |+++|+|+.+++..
T Consensus        59 ~~~~~~~~~~--~~~v~~~~~~~~~l~~~~~~~~~~~~Vv~~-~~~~Gvit~~di~~  112 (113)
T cd04623          59 TPVSEIMTRN--VITVTPDDTVDEAMALMTERRFRHLPVVDG-GKLVGIVSIGDVVK  112 (113)
T ss_pred             cCHHHhcCCC--cEEECCCCcHHHHHHHHHHcCCCEeEEEeC-CEEEEEEEHHHhhc
Confidence            3577888775  558999999999999999999999999986 89999999999864

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04622 CBS_pair_9 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.65  E-value=0.00012  Score=55.07  Aligned_cols=54  Identities=28%  Similarity=0.362  Sum_probs=47.8

Q ss_pred             hhhhccccCCCCccccCCCcHHHHHHHHHhcCcceEEEEcCCCcEEEEeeHHHHHH
Q 019775          210 KVQDVMKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRR  265 (336)
Q Consensus       210 ~v~~im~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~it~~dl~~  265 (336)
                      ++.++|...  ++++++++++.++++.|.+.+...+||++++|+++|+++..++.+
T Consensus        59 ~~~~~~~~~--~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~it~~di~~  112 (113)
T cd04622          59 TVGDVMTRG--VVTVTEDDDVDEAARLMREHQVRRLPVVDDDGRLVGIVSLGDLAR  112 (113)
T ss_pred             CHHHhccCC--ccEECCCCCHHHHHHHHHHcCCCeeeEECCCCcEEEEEEHHHhhc
Confidence            477888776  458999999999999999999999999998799999999999864

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04586 CBS_pair_BON_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the BON (bacterial OsmY and nodulation domain) domain

Probab=97.64  E-value=6.6e-05  Score=58.77  Aligned_cols=54  Identities=22%  Similarity=0.236  Sum_probs=48.1

Q ss_pred             hhhhhccccCCCCccccCCCcHHHHHHHHHhcCcceEEEEcCCCcEEEEeeHHHHHH
Q 019775          209 FKVQDVMKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRR  265 (336)
Q Consensus       209 ~~v~~im~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~it~~dl~~  265 (336)
                      .++.++|.+.  ++++.++.++.++++.|.+.+.+.+||+| +|+++|+++.+|+..
T Consensus        81 ~~v~~~~~~~--~~~v~~~~~~~~~~~~~~~~~~~~l~Vvd-~g~~~Gvit~~di~~  134 (135)
T cd04586          81 RKVADVMTRP--VVTVGEDTPLAEVAELMEEHRIKRVPVVR-GGRLVGIVSRADLLR  134 (135)
T ss_pred             CCHHHHhCCC--ceEeCCCCcHHHHHHHHHHcCCCccCEec-CCEEEEEEEhHhhhc
Confidence            4677888776  55899999999999999999999999999 899999999999864

BON is a putative phospholipid-binding domain found in a family of osmotic shock protection proteins. It is also found in some secretins and a group of potential haemolysins. Its likely function is attachment to phospholipid membranes. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04601 CBS_pair_IMPDH This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein

Probab=97.64  E-value=0.00011  Score=54.95  Aligned_cols=54  Identities=28%  Similarity=0.370  Sum_probs=45.8

Q ss_pred             hhhhccccCCCCccccC-CCcHHHHHHHHHhcCcceEEEEcCCCcEEEEeeHHHHHH
Q 019775          210 KVQDVMKPQKELPVCKE-GDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRR  265 (336)
Q Consensus       210 ~v~~im~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~it~~dl~~  265 (336)
                      ++.++|.+..  +.+.+ ++++.++++.|.+.+.+.+||++++|+++|+|+.+|++.
T Consensus        55 ~v~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~Gvi~~~dil~  109 (110)
T cd04601          55 PVSEVMTPEN--LLTTVEGTSLEEALELLHEHKIEKLPVVDDEGKLKGLITVKDIEK  109 (110)
T ss_pred             CHHHhcccCc--eEEecCCCCHHHHHHHHHHhCCCeeeEEcCCCCEEEEEEhhhhhc
Confidence            4677887653  35566 999999999999999999999998899999999999864

IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentosa.

>cd04595 CBS_pair_DHH_polyA_Pol_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with an upstream DHH domain which performs a phosphoesterase function and a downstream polyA polymerase domain

Probab=97.63  E-value=0.00011  Score=55.09  Aligned_cols=53  Identities=21%  Similarity=0.296  Sum_probs=46.8

Q ss_pred             hhhhccccCCCCccccCCCcHHHHHHHHHhcCcceEEEEcCCCcEEEEeeHHHHHH
Q 019775          210 KVQDVMKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRR  265 (336)
Q Consensus       210 ~v~~im~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~it~~dl~~  265 (336)
                      ++.++|.+.  ++++++++++.++++.|.+.+.+.+||++ +|+++|++|..|+..
T Consensus        57 ~~~~~~~~~--~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Gvvt~~di~~  109 (110)
T cd04595          57 PVKDYMSTD--VVTVPPDTPLSEVQELMVEHDIGRVPVVE-DGRLVGIVTRTDLLR  109 (110)
T ss_pred             cHHHHhcCC--CEEECCCCcHHHHHHHHHHcCCCeeEEEe-CCEEEEEEEhHHhhc
Confidence            466788775  45899999999999999999999999999 789999999999864

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04592 CBS_pair_EriC_assoc_euk This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes

Probab=97.61  E-value=0.00014  Score=57.06  Aligned_cols=47  Identities=21%  Similarity=0.277  Sum_probs=42.4

Q ss_pred             CCeeeCCCccHHHHHHHhcCCCCCccEeEEEeCCCcEEEEEehhhHhhc
Q 019775          286 SPRTIGPDAMAVEAMQKMESPPSPVQFLPVINRQNILIGIVTLHGLVSA  334 (336)
Q Consensus       286 ~~~~v~~~~~l~~~~~~~~~~~~~~~~l~Vv~~~~~~iGiit~~di~~~  334 (336)
                      .+..+.+++++.++++.|.+.  +...+||+|++|+++|+||..|++++
T Consensus         2 ~~~~v~~~~~l~ea~~~m~~~--~~~~~~VvD~~g~l~Givt~~Dl~~~   48 (133)
T cd04592           2 KYIKVSPTTTLKEALNLMLDE--KQSCVLVVDSDDFLEGILTLGDIQRF   48 (133)
T ss_pred             CceEECCCCCHHHHHHHHHHc--CCCEEEEECCCCeEEEEEEHHHHHHH
Confidence            457899999999999999888  88899999988999999999998863

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually

>cd04800 CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain

Probab=97.61  E-value=0.00012  Score=54.91  Aligned_cols=53  Identities=25%  Similarity=0.382  Sum_probs=46.9

Q ss_pred             hhhhccccCCCCccccCCCcHHHHHHHHHhcCcceEEEEcCCCcEEEEeeHHHHHH
Q 019775          210 KVQDVMKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRR  265 (336)
Q Consensus       210 ~v~~im~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~it~~dl~~  265 (336)
                      ++.++|...  ++.+++++++.++++.|.+++.+.+||+++ |+++|+++.+|+..
T Consensus        58 ~i~~~~~~~--~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~Giit~~di~~  110 (111)
T cd04800          58 PVSEVMTAP--PITIPPDATVFEALLLMLERGIHHLPVVDD-GRLVGVISATDLLR  110 (111)
T ss_pred             CHHHHhCCC--CeEECCCCcHHHHHHHHHHcCCCeeeEeEC-CEEEEEEEHHHhhc
Confidence            566778765  558999999999999999999999999986 89999999999874

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pa

>cd04613 CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC

Probab=97.61  E-value=0.00014  Score=54.76  Aligned_cols=55  Identities=24%  Similarity=0.309  Sum_probs=49.0

Q ss_pred             hhhhhccccCCCCccccCCCcHHHHHHHHHhcCcceEEEEcC-CCcEEEEeeHHHHHH
Q 019775          209 FKVQDVMKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVIDE-EYHLIGTFTDGDLRR  265 (336)
Q Consensus       209 ~~v~~im~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~-~~~~~G~it~~dl~~  265 (336)
                      .++.++|.+.  ++++++++++.++++.|.+.+...+||+++ +++++|+++.+|+..
T Consensus        58 ~~v~~~~~~~--~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~~Gvvt~~di~~  113 (114)
T cd04613          58 VVASDIMTKP--PVVVYPEDSLEDALKKFEDSDYEQLPVVDDDPGKLLGILSRSDLLS  113 (114)
T ss_pred             EEHHHhccCC--CcEEcCCCCHHHHHHHHhhCCccEeeEEeCCCCEEEEEEEhHHhhc
Confidence            4678889887  458999999999999999999999999997 789999999999864

SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase a

>cd04626 CBS_pair_13 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.60  E-value=0.00011  Score=55.10  Aligned_cols=53  Identities=28%  Similarity=0.372  Sum_probs=46.6

Q ss_pred             hhhhccccCCCCccccCCCcHHHHHHHHHhcCcceEEEEcCCCcEEEEeeHHHHHH
Q 019775          210 KVQDVMKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRR  265 (336)
Q Consensus       210 ~v~~im~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~it~~dl~~  265 (336)
                      ++.++|.+.  ++.+.++.++.+++..|.+++...+||+++ |+++|+||..|+..
T Consensus        58 ~v~~~~~~~--~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~G~it~~di~~  110 (111)
T cd04626          58 KVFNIVSQD--VFYVNEEDTIDEALDIMREKQIGRLPVVDD-NKLIGVVRTKDILD  110 (111)
T ss_pred             cHHHHhcCC--cEEEcCCCcHHHHHHHHHHcCCCeeeEeEC-CEEEEEEEhHHhcc
Confidence            566778765  558999999999999999999999999997 89999999999864

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04605 CBS_pair_MET2_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the MET2 domain

Probab=97.60  E-value=0.00019  Score=53.79  Aligned_cols=53  Identities=23%  Similarity=0.359  Sum_probs=46.2

Q ss_pred             hhhccccCCCCccccCCCcHHHHHHHHHhcCcceEEEEcCCCcEEEEeeHHHHHH
Q 019775          211 VQDVMKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRR  265 (336)
Q Consensus       211 v~~im~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~it~~dl~~  265 (336)
                      +.++|.+.  ++++++++++.++++.|.+++...+||++++|+++|+++..++..
T Consensus        57 ~~~~~~~~--~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~G~v~~~di~~  109 (110)
T cd04605          57 VEDIMTRN--VITATPDEPIDVAARKMERHNISALPVVDAENRVIGIITSEDISK  109 (110)
T ss_pred             HHHhcCCC--CeEECCCCcHHHHHHHHHHhCCCEEeEECCCCcEEEEEEHHHhhh
Confidence            55667655  458999999999999999999999999998899999999999853

Met2 is a key enzyme in the biosynthesis of methionine. It encodes a homoserine transacetylase involved in converting homoserine to O-acetyl homoserine. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04643 CBS_pair_30 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.60  E-value=0.00012  Score=55.37  Aligned_cols=52  Identities=31%  Similarity=0.413  Sum_probs=45.2

Q ss_pred             hhhhccccCCCCccccCCCcHHHHHHHHHhcCcceEEEEcCCCcEEEEeeHHHHHH
Q 019775          210 KVQDVMKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRR  265 (336)
Q Consensus       210 ~v~~im~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~it~~dl~~  265 (336)
                      +++++|.+.  ++++.+++++.++++.|.+.+  .+||++++|+++|++|..++..
T Consensus        64 ~v~~~~~~~--~~~v~~~~~l~~a~~~~~~~~--~~~Vv~~~~~~~Gvit~~dil~  115 (116)
T cd04643          64 KVIDVMNTD--VPVIIDDADIEEILHLLIDQP--FLPVVDDDGIFIGIITRREILK  115 (116)
T ss_pred             cHHHHhcCC--CceecCCCCHHHHHHHHhcCC--ceeEEeCCCeEEEEEEHHHhhc
Confidence            577888876  458999999999999998754  5999998899999999999874

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional

Probab=97.59  E-value=0.00013  Score=66.31  Aligned_cols=55  Identities=18%  Similarity=0.152  Sum_probs=50.0

Q ss_pred             hhhhhccccCCCCccccCCCcHHHHHHHHHhcCcceEEEEcCCCcEEEEeeHHHHHH
Q 019775          209 FKVQDVMKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRR  265 (336)
Q Consensus       209 ~~v~~im~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~it~~dl~~  265 (336)
                      .+++++|.+.  ++++.+++++.++++.|.+++...+||+|++|+++|+|+.+|+..
T Consensus       263 ~~v~~im~~~--~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~lvGvIt~~di~~  317 (321)
T PRK11543        263 TPVNEAMTRG--GTTLQAQSRAIDAKEILMKRKITAAPVVDENGKLTGAINLQDFYQ  317 (321)
T ss_pred             CcHHHhcCCC--CEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHh
Confidence            3578999886  458999999999999999999999999998889999999999985

>cd04594 CBS_pair_EriC_assoc_archaea This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the EriC CIC-type chloride channels in archaea

Probab=97.59  E-value=0.00016  Score=53.78  Aligned_cols=52  Identities=13%  Similarity=0.121  Sum_probs=45.5

Q ss_pred             hhhccccCCCCccccCCCcHHHHHHHHHhcCcceEEEEcCCCcEEEEeeHHHHHH
Q 019775          211 VQDVMKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRR  265 (336)
Q Consensus       211 v~~im~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~it~~dl~~  265 (336)
                      +.++|.+.  .++++++.++.++++.|.+++...+||++ +|+++|+++.+|+..
T Consensus        52 ~~~~~~~~--~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~-~~~~iGvit~~dl~~  103 (104)
T cd04594          52 VVDYIVRG--IPYVRLTSTAEEAWEVMMKNKTRWCPVVD-DGKFKGIVTLDSILD  103 (104)
T ss_pred             hhhhhhcC--CcEEcCCCCHHHHHHHHHHcCcceEEEEE-CCEEEEEEEHHHhhc
Confidence            55677765  45899999999999999999999999998 689999999999864

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS do

>cd04612 CBS_pair_SpoIVFB_EriC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC

Probab=97.59  E-value=0.00017  Score=53.97  Aligned_cols=55  Identities=27%  Similarity=0.406  Sum_probs=48.0

Q ss_pred             hhhhhccccCCCCccccCCCcHHHHHHHHHhcCcceEEEEcCCCcEEEEeeHHHHHH
Q 019775          209 FKVQDVMKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRR  265 (336)
Q Consensus       209 ~~v~~im~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~it~~dl~~  265 (336)
                      ..+.++|.+.  ++++..++++.++++.|.+++...+||++++|+++|+++..|+..
T Consensus        56 ~~~~~~~~~~--~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~it~~di~~  110 (111)
T cd04612          56 VLVGDVMTRD--PVTASPDETLRDALKRMAERDIGRLPVVDDSGRLVGIVSRSDLLR  110 (111)
T ss_pred             cCHHHhccCC--CeEECCCCCHHHHHHHHHhCCCCeeeEEcCCCCEEEEEEHHHhhh
Confidence            3566778776  568999999999999999999999999998899999999999864

SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase an

>cd04589 CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the bacterial CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain

Probab=97.58  E-value=0.00012  Score=54.89  Aligned_cols=53  Identities=17%  Similarity=0.272  Sum_probs=46.5

Q ss_pred             hhhhccccCCCCccccCCCcHHHHHHHHHhcCcceEEEEcCCCcEEEEeeHHHHHH
Q 019775          210 KVQDVMKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRR  265 (336)
Q Consensus       210 ~v~~im~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~it~~dl~~  265 (336)
                      +++++|.+.  ++.+++++++.+++++|.+++...+||+++ ++++|+++..++..
T Consensus        58 ~i~~~~~~~--~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~G~it~~dl~~  110 (111)
T cd04589          58 PVGEIATFP--LITVDPDDFLFNALLLMTRHRIHRVVVREG-GEVVGVLEQTDLLS  110 (111)
T ss_pred             CHHHHhCCC--cEEECCCCcHHHHHHHHHHhCccEEEEeeC-CEEEEEEEhHHhhc
Confidence            466778765  558999999999999999999999999984 89999999999874

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or

>cd04624 CBS_pair_11 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.58  E-value=0.00017  Score=54.18  Aligned_cols=54  Identities=20%  Similarity=0.301  Sum_probs=47.4

Q ss_pred             hhhhccccCCCCccccCCCcHHHHHHHHHhcCcceEEEEcCCCcEEEEeeHHHHHH
Q 019775          210 KVQDVMKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRR  265 (336)
Q Consensus       210 ~v~~im~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~it~~dl~~  265 (336)
                      ++.++|.+.  ++.+.+++++.++++.|.+++...+||++++|+++|+++.+++.+
T Consensus        58 ~v~~~~~~~--~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~g~~~Gilt~~dl~~  111 (112)
T cd04624          58 PVSEIMTRD--LVTVDPDEPVAEAAKLMRKNNIRHHLVVDKGGELVGVISIRDLVR  111 (112)
T ss_pred             CHHHhccCC--CEEECCCCcHHHHHHHHHHcCccEEEEEcCCCcEEEEEEHHHhcc
Confidence            466788776  568999999999999999988899999998899999999999863

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>COG0166 Pgi Glucose-6-phosphate isomerase [Carbohydrate transport and metabolism]

Probab=97.56  E-value=0.00091  Score=62.65  Aligned_cols=103  Identities=22%  Similarity=0.233  Sum_probs=80.2

Q ss_pred             CeEEEEeccchHHHHHHHHHHHHhcCC---eeeecCC--ccccccccCCCCCC-cEEEEEeCCCCcHHHHHHHHHHHHcC
Q 019775           55 GTIFFTGVGKSGFVANKISQTLISLGI---KSGFLNP--LDALHGDIGILSSD-DILVMFSKSGNTEELLKVVPCAKAKG  128 (336)
Q Consensus        55 ~~I~i~G~G~s~~~a~~~~~~l~~~g~---~~~~~~~--~~~~~~~~~~~~~~-dlvi~iS~sG~~~~~~~~~~~ak~~g  128 (336)
                      ..|+.+|.|.|..-+.++...|.-...   +++++.+  .+.....+..++++ .+++++|.||.|.|++...+.+++..
T Consensus        80 ~~IV~IGIGGS~LG~~~~~~aL~~~~~~~~~~~Fv~nid~~~~~~~l~~i~~~~tl~iviSKSGtT~Et~~n~~~~r~~~  159 (446)
T COG0166          80 TDIVNIGIGGSDLGPRAVTEALRPYAPNGPRVHFVSNVDPTYLAEVLKKLDPETTLFIVISKSGTTLETLTNFRLARKWL  159 (446)
T ss_pred             ceEEEeCCchhHHHHHHHHHHhhhhccCCCceEEecCCCchhhhHHHhccCcccEEEEEEeCCCCcHHHHHHHHHHHHHH
Confidence            589999999999999999888887644   6777764  45555555666644 68999999999999999999999987


Q ss_pred             -------CeEEEEeCCCCCcccccc----CEEEEcCCCcc
Q 019775          129 -------AYLVSVTSVEGNALAAVC----DMNVHLPVERE  157 (336)
Q Consensus       129 -------~~vi~IT~~~~s~l~~~a----d~~i~~~~~~~  157 (336)
                             .+..++|+...+.+...+    .-+|.+|..-.
T Consensus       160 ~~~~~~~~~~~v~~~~~~~~l~~~~~~~~~~~f~ipd~VG  199 (446)
T COG0166         160 EKKEEAAKKHFVATSTNGGALAVLAGENGLETFEIPDWVG  199 (446)
T ss_pred             HhhhhhhhcEEEEEcCCchHHHHhcCCCceeEEECCCCCC
Confidence                   567788887788887555    45677776544

>cd04629 CBS_pair_16 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.55  E-value=0.00012  Score=55.28  Aligned_cols=53  Identities=23%  Similarity=0.315  Sum_probs=46.9

Q ss_pred             hhhhccccCCCCccccCCCcHHHHHHHHHhcCcceEEEEcCCCcEEEEeeHHHHHH
Q 019775          210 KVQDVMKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRR  265 (336)
Q Consensus       210 ~v~~im~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~it~~dl~~  265 (336)
                      ++.++|.+.  ++++.+++++.++++.|.+.+.+.+||+++ |+++|++|..++..
T Consensus        61 ~v~~~~~~~--~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~Gvit~~di~~  113 (114)
T cd04629          61 TVRDIMTTE--VLTVSPDDSIVDLAQLMLKAKPKRYPVVDD-GKLVGQISRRDVLR  113 (114)
T ss_pred             cHHHHhccC--ceEECCCCcHHHHHHHHHHhCCCccCEEEC-CEEEEEEEHHHHhc
Confidence            567888775  458999999999999999999899999996 89999999999874

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04642 CBS_pair_29 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.53  E-value=0.00021  Score=55.10  Aligned_cols=50  Identities=24%  Similarity=0.325  Sum_probs=43.7

Q ss_pred             ccccCCCCccccCCCcHHHHHHHHHhcCcceEEEEcCCCcEEEEeeHHHHHH
Q 019775          214 VMKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRR  265 (336)
Q Consensus       214 im~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~it~~dl~~  265 (336)
                      .|...  .+++++++++.+++++|.+++...+||+|++++++|+||..|+..
T Consensus        76 ~~~~~--~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~~~~~Giit~~dil~  125 (126)
T cd04642          76 VKSRP--LITCTPSSTLKEVITKLVANKVHRVWVVDEEGKPIGVITLTDIIS  125 (126)
T ss_pred             cccCC--CeEECCCCcHHHHHHHHHHhCCcEEEEECCCCCEEEEEEHHHHhc
Confidence            34443  558999999999999999999999999998899999999999864

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04802 CBS_pair_3 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.52  E-value=0.0002  Score=53.84  Aligned_cols=53  Identities=23%  Similarity=0.324  Sum_probs=46.0

Q ss_pred             hhhhccccCCCCccccCCCcHHHHHHHHHhcCcceEEEEcCCCcEEEEeeHHHHHH
Q 019775          210 KVQDVMKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRR  265 (336)
Q Consensus       210 ~v~~im~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~it~~dl~~  265 (336)
                      ++.++|.+.  ++++++++++.++++.|.+.+...+||++++ +++|+|+.+|+..
T Consensus        59 ~~~~~~~~~--~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~-~~~Gvi~~~di~~  111 (112)
T cd04802          59 PVGEVMSTP--LITIDPNASLNEAAKLMAKHGIKRLPVVDDD-ELVGIVTTTDIVM  111 (112)
T ss_pred             CHHHhcCCC--cEEECCCCCHHHHHHHHHHcCCCeeEEeeCC-EEEEEEEhhhhhc
Confidence            566788765  5589999999999999999999999999865 9999999999863

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>PRK15094 magnesium/cobalt efflux protein CorC; Provisional

Probab=97.52  E-value=0.00042  Score=61.84  Aligned_cols=90  Identities=19%  Similarity=0.169  Sum_probs=67.1

Q ss_pred             hhhccccCCCCccccCCCcHHHHHHHHHhcCcceEEEEcCCCcEEEEeeHHHHHHHHHhcCCchhhh----hHhhhcCCC
Q 019775          211 VQDVMKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRRTLKASGEGIFKL----TVGEMCNRS  286 (336)
Q Consensus       211 v~~im~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~it~~dl~~~~~~~~~~~~~~----~i~~~~~~~  286 (336)
                      +.++|++.   ++++++.++.++++.|.+.+...+||+|+.|.++|+||.+|++..+...-......    .+... ...
T Consensus       135 l~~l~r~~---~~V~e~~~l~~~L~~m~~~~~~~a~VvDe~G~viGiVTleDIle~ivGei~de~d~~~~~~i~~~-~~~  210 (292)
T PRK15094        135 MDKVLRQA---VVVPESKRVDRMLKEFRSQRYHMAIVIDEFGGVSGLVTIEDILELIVGEIEDEYDEEDDIDFRQL-SRH  210 (292)
T ss_pred             HHHHcCCC---cCcCCCCcHHHHHHHHHhcCCEEEEEEeCCCCEEEEeEHHHHHHHHhCCCccccccccccccEEe-CCC
Confidence            56778763   37999999999999999999999999998899999999999999887532111111    11111 223


Q ss_pred             CeeeCCCccHHHHHHHhc
Q 019775          287 PRTIGPDAMAVEAMQKME  304 (336)
Q Consensus       287 ~~~v~~~~~l~~~~~~~~  304 (336)
                      -+.+....++.++.+.+.
T Consensus       211 ~~~v~G~~~l~dl~~~l~  228 (292)
T PRK15094        211 TWTVRALASIEDFNEAFG  228 (292)
T ss_pred             eEEEEeccCHHHHHHHhC
Confidence            366888888888877763

>cd04636 CBS_pair_23 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.51  E-value=0.00018  Score=55.96  Aligned_cols=53  Identities=28%  Similarity=0.431  Sum_probs=47.4

Q ss_pred             hhhhccccCCCCccccCCCcHHHHHHHHHhcCcceEEEEcCCCcEEEEeeHHHHHH
Q 019775          210 KVQDVMKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRR  265 (336)
Q Consensus       210 ~v~~im~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~it~~dl~~  265 (336)
                      ++.++|.+.  .+.+.+++++.+++..|.+.+...+||+++ |+++|++|..|+..
T Consensus        79 ~v~~~~~~~--~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~-~~~iGvit~~dl~~  131 (132)
T cd04636          79 KVEEIMTKK--VITVDEDTTIEDVARIMSKKNIKRLPVVDD-GKLVGIISRGDIIR  131 (132)
T ss_pred             CHHHhccCC--ceEECCCCcHHHHHHHHHHCCCCeeEEEEC-CEEEEEEEHHHhhc
Confidence            677888776  458999999999999999999999999997 99999999999874

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04633 CBS_pair_20 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.49  E-value=0.00014  Score=55.48  Aligned_cols=54  Identities=24%  Similarity=0.345  Sum_probs=47.4

Q ss_pred             hhhhhccccCCCCccccCCCcHHHHHHHHHhcCcceEEEEcCCCcEEEEeeHHHHHH
Q 019775          209 FKVQDVMKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRR  265 (336)
Q Consensus       209 ~~v~~im~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~it~~dl~~  265 (336)
                      .++.++|.+.  ++++++++++.++++.|.+.+.+.+||+++ |+++|+++..|+.+
T Consensus        67 ~~~~~~~~~~--~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~Gvi~~~dl~~  120 (121)
T cd04633          67 LPVSDIMTRP--VITIEPDTSVSDVASLMLENNIGGLPVVDD-GKLVGIVTRTDILR  120 (121)
T ss_pred             cCHHHHccCC--ceEECCCCcHHHHHHHHHHcCCCcccEEEC-CEEEEEEEHHHhhc
Confidence            3567788765  558999999999999999999999999997 89999999999874

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04608 CBS_pair_PALP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream

Probab=97.49  E-value=0.00027  Score=54.54  Aligned_cols=47  Identities=30%  Similarity=0.551  Sum_probs=42.9

Q ss_pred             CCCeeeCCCccHHHHHHHhcCCCCCccEeEEEeCCCcEEEEEehhhHhh
Q 019775          285 RSPRTIGPDAMAVEAMQKMESPPSPVQFLPVINRQNILIGIVTLHGLVS  333 (336)
Q Consensus       285 ~~~~~v~~~~~l~~~~~~~~~~~~~~~~l~Vv~~~~~~iGiit~~di~~  333 (336)
                      +++.++.++.++.++++.|.+.  +...+||+|++|+++|+++..|+++
T Consensus         2 ~~~~~v~~~~~v~~a~~~m~~~--~~~~~~Vvd~~~~~~Gii~~~dl~~   48 (124)
T cd04608           2 KAPVTVLPTVTCAEAIEILKEK--GFDQLPVVDESGKILGMVTLGNLLS   48 (124)
T ss_pred             CCCEEECCCCCHHHHHHHHHHc--CCCEEEEEcCCCCEEEEEEHHHHHH
Confidence            4577899999999999999988  8899999998899999999999885

The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a poten

>PRK10892 D-arabinose 5-phosphate isomerase; Provisional

Probab=97.45  E-value=0.00024  Score=64.65  Aligned_cols=56  Identities=14%  Similarity=0.154  Sum_probs=49.8

Q ss_pred             hhhHhhhcCC--CCeeeCCCccHHHHHHHhcCCCCCccEeEEEeCCCcEEEEEehhhHhh
Q 019775          276 KLTVGEMCNR--SPRTIGPDAMAVEAMQKMESPPSPVQFLPVINRQNILIGIVTLHGLVS  333 (336)
Q Consensus       276 ~~~i~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~l~Vv~~~~~~iGiit~~di~~  333 (336)
                      ..++.++|.+  ++..+.+++++.++++.|.+.  +...+||+|++|+++|+||..|+.+
T Consensus       201 ~~~V~dim~~~~~~~~v~~~~sl~~a~~~~~~~--~~~~~vVvd~~g~lvGivt~~Dl~~  258 (326)
T PRK10892        201 LLRVSDIMHTGDEIPHVSKTASLRDALLEITRK--NLGMTVICDDNMKIEGIFTDGDLRR  258 (326)
T ss_pred             cCcHHHHhCCCCCCeEECCCCCHHHHHHHHHhc--CCCeEEEEcCCCcEEEEEecHHHHH
Confidence            5678999987  788999999999999999887  7888888898899999999999864

>COG4109 Predicted transcriptional regulator containing CBS domains [Transcription]

Probab=97.44  E-value=0.00024  Score=62.82  Aligned_cols=64  Identities=19%  Similarity=0.251  Sum_probs=56.9

Q ss_pred             hhhhhhhhhhccccCCCCccccCCCcHHHHHHHHHhcCcceEEEEcCCCcEEEEeeHHHHHHHHHh
Q 019775          204 GKSLIFKVQDVMKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRRTLKA  269 (336)
Q Consensus       204 ~~~~~~~v~~im~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~it~~dl~~~~~~  269 (336)
                      ++....++..+|.+++.  ++.+..|+..+.+.|-..+++.+||++++.+++|+||+.|++..+..
T Consensus       244 ~~~~~t~ieKVMtknp~--tv~~~tsVAsvaq~MiwE~iem~PVv~~n~~llGiitR~dvlk~lq~  307 (432)
T COG4109         244 DKKPSTTIEKVMTKNPI--TVRAKTSVASVAQMMIWEGIEMLPVVDSNNTLLGIITRQDVLKSLQM  307 (432)
T ss_pred             cCCCCccHHHHhccCCe--eecccchHHHHHHHHHhccceeeeEEcCCceEEEEEEHHHHHHHHHH
Confidence            33446688899999865  89999999999999999999999999999999999999999987753

>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional

Probab=97.41  E-value=0.00059  Score=65.30  Aligned_cols=60  Identities=20%  Similarity=0.277  Sum_probs=53.5

Q ss_pred             hhhhhccccCCCCccccCCCcHHHHHHHHHhcCcceEEEEcCCCcEEEEeeHHHHHHHHH
Q 019775          209 FKVQDVMKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRRTLK  268 (336)
Q Consensus       209 ~~v~~im~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~it~~dl~~~~~  268 (336)
                      .+++++|.+...+++++++.++.++.++|.+++...+||+|++++++|+||.+||.....
T Consensus       159 ~~V~diMt~~~~lvtv~~~~sl~eAl~lm~e~~i~~LPVVd~~g~liGIIT~~DIl~~~~  218 (495)
T PTZ00314        159 TPVSEVMTPREKLVVGNTPISLEEANEVLRESRKGKLPIVNDNGELVALVSRSDLKKNRG  218 (495)
T ss_pred             CCHHHhhCCcCCceEeCCCCCHHHHHHHHHHcCCCeEEEEcCCCcEEEEEEehHhhhccc
Confidence            468899987434678999999999999999999999999999999999999999998653

>cd04584 CBS_pair_ACT_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria

Probab=97.38  E-value=0.00035  Score=53.18  Aligned_cols=54  Identities=24%  Similarity=0.465  Sum_probs=47.0

Q ss_pred             hhhhhccccCCCCccccCCCcHHHHHHHHHhcCcceEEEEcCCCcEEEEeeHHHHHH
Q 019775          209 FKVQDVMKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRR  265 (336)
Q Consensus       209 ~~v~~im~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~it~~dl~~  265 (336)
                      .++.++|.+.  .+++++++++.++++.|.+.+...+||+++ |+++|+++..++..
T Consensus        67 ~~v~~~~~~~--~~~i~~~~~l~~~~~~~~~~~~~~~~V~~~-~~~~Gvv~~~di~~  120 (121)
T cd04584          67 MPVKEIMTKD--VITVHPLDTVEEAALLMREHRIGCLPVVED-GRLVGIITETDLLR  120 (121)
T ss_pred             cCHHHHhhCC--CeEECCCCcHHHHHHHHHHcCCCeEEEeeC-CEEEEEEEHHHhhc
Confidence            3567778775  458999999999999999999999999986 89999999999864

Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The in

>cd04591 CBS_pair_EriC_assoc_euk_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes and bacteria

Probab=97.35  E-value=0.0004  Score=51.83  Aligned_cols=49  Identities=24%  Similarity=0.274  Sum_probs=43.6

Q ss_pred             ccccCCCCccccCCCcHHHHHHHHHhcCcceEEEEcCCCcEEEEeeHHHHHH
Q 019775          214 VMKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRR  265 (336)
Q Consensus       214 im~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~it~~dl~~  265 (336)
                      +|.++  ++++++++++.++.+.|.+++.+.+||++ +|+++|+++.+++..
T Consensus        56 ~m~~~--~~~v~~~~~l~~~~~~~~~~~~~~~pVv~-~~~~~Gvvt~~dl~~  104 (105)
T cd04591          56 YIDPS--PFTVSPRTSLEKVHQLFRKLGLRHLLVVD-EGRLVGIITRKDLLK  104 (105)
T ss_pred             hccCC--CceECCCCcHHHHHHHHHHcCCCEEEEEE-CCeEEEEEEhhhhhc
Confidence            67665  45899999999999999999999999995 789999999999864

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS

>cd04632 CBS_pair_19 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.35  E-value=0.00046  Score=53.28  Aligned_cols=55  Identities=18%  Similarity=0.352  Sum_probs=47.2

Q ss_pred             hhhhhccccCCCCccccCCCcHHHHHHHHHhcCcceEEEEc--CCCcEEEEeeHHHHHH
Q 019775          209 FKVQDVMKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVID--EEYHLIGTFTDGDLRR  265 (336)
Q Consensus       209 ~~v~~im~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ipVvd--~~~~~~G~it~~dl~~  265 (336)
                      .++.++|..+  ++++.++.++.+++..|.+.+...+||++  ++|+++|+||.+|+..
T Consensus        71 ~~~~~~~~~~--~~~v~~~~~l~~~l~~~~~~~~~~~~V~~~~~~~~~~Gvit~~di~~  127 (128)
T cd04632          71 LPVYDAMSSP--VITASPNDSVRDAVDRMLENDDSSVVVVTPDDDTKVVGILTKKDVLR  127 (128)
T ss_pred             CcHHHHhcCC--CceECCCCcHHHHHHHHHhCCCCeEeEeccCCCCcEEEEEEhHhhhc
Confidence            4677888765  56899999999999999998888999985  4689999999999864

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>TIGR00393 kpsF KpsF/GutQ family protein

Probab=97.32  E-value=0.00045  Score=60.99  Aligned_cols=56  Identities=21%  Similarity=0.265  Sum_probs=50.6

Q ss_pred             hhHhhhcCCC-CeeeCCCccHHHHHHHhcCCCCCccEeEEEeCCCcEEEEEehhhHhhc
Q 019775          277 LTVGEMCNRS-PRTIGPDAMAVEAMQKMESPPSPVQFLPVINRQNILIGIVTLHGLVSA  334 (336)
Q Consensus       277 ~~i~~~~~~~-~~~v~~~~~l~~~~~~~~~~~~~~~~l~Vv~~~~~~iGiit~~di~~~  334 (336)
                      .++.++|.++ +..+.+++++.++++.|.+.  +.+.+||+|++|+++|+|+..|+.+.
T Consensus       155 ~~v~~im~~~~~~~v~~~~~v~~a~~~~~~~--~~~~~~Vvd~~g~~~Givt~~dl~~~  211 (268)
T TIGR00393       155 VKVKDLMQTTDLPLIAPTTSFKDALLEMSEK--RLGSAIVCDENNQLVGVFTDGDLRRA  211 (268)
T ss_pred             hhHHHHhCCCCCCcCCCCCcHHHHHHHHhhc--CCcEEEEEeCCCCEEEEEEcHHHHHH
Confidence            6788999888 88999999999999999888  88999999988999999999998753

This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli.

>PRK01862 putative voltage-gated ClC-type chloride channel ClcB; Provisional

Probab=97.30  E-value=0.00052  Score=67.38  Aligned_cols=58  Identities=17%  Similarity=0.178  Sum_probs=51.3

Q ss_pred             hhhhccccCCCCccccCCCcHHHHHHHHHhcCcceEEEEcCC--CcEEEEeeHHHHHHHHHh
Q 019775          210 KVQDVMKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEE--YHLIGTFTDGDLRRTLKA  269 (336)
Q Consensus       210 ~v~~im~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~--~~~~G~it~~dl~~~~~~  269 (336)
                      +++++|.++  ++++++++++.++++.|.+++.+.+||+|++  ++++|+||++|+.+.+.+
T Consensus       513 ~v~dim~~~--~~~v~~d~~L~~al~~m~~~~~~~lpVVd~~~~~~liGvIt~~DIl~~l~~  572 (574)
T PRK01862        513 TAADYAHTP--FPLLTPDMPLGDALEHFMAFQGERLPVVESEASPTLAGVVYKTSLLDAYRR  572 (574)
T ss_pred             hHHHhccCC--CeeECCCCCHHHHHHHHHhcCCCeeeeEeCCCCCeEEEEEEHHHHHHHHHh
Confidence            678889876  4589999999999999999999999999876  489999999999987653

>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]

Probab=97.30  E-value=0.0004  Score=61.08  Aligned_cols=108  Identities=18%  Similarity=0.219  Sum_probs=81.0

Q ss_pred             hhhhhccccCCCCccccCCCcHHHHHHHHHhcCcceEEEEcCCCcEEEEeeHHHHHHHHHhcCCchhhhhHhhhcCCCCe
Q 019775          209 FKVQDVMKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRRTLKASGEGIFKLTVGEMCNRSPR  288 (336)
Q Consensus       209 ~~v~~im~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~it~~dl~~~~~~~~~~~~~~~i~~~~~~~~~  288 (336)
                      .++.++|++....+.-.+...-..+...+.....+.+.+++.+++.+|+++..++...               .+.+.+.
T Consensus       274 ltA~~IM~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~---------------~~~~~~~  338 (386)
T COG4175         274 LTAKDIMRRPDLLIRKTPGDGPRVALKLLRDEGREYGYAVDRGNKFVGVVSIDSLVKA---------------ALIDDVL  338 (386)
T ss_pred             eeHHHhhcccccccccccccccchhhhhhhhccchhhHHHhccCceeeEEeccchhcc---------------ccccccc
Confidence            4677888862221122333344567778887777778888878889999999887653               2345567


Q ss_pred             eeCCCccHHHHHHHhcCCCCCccEeEEEeCCCcEEEEEehhhHhhc
Q 019775          289 TIGPDAMAVEAMQKMESPPSPVQFLPVINRQNILIGIVTLHGLVSA  334 (336)
Q Consensus       289 ~v~~~~~l~~~~~~~~~~~~~~~~l~Vv~~~~~~iGiit~~di~~~  334 (336)
                      .+..++++.+.+....+.   ...+||+|++++++|+|++..++.+
T Consensus       339 ~v~~d~~~~~~~~~~~~~---~~p~aVvde~~r~vG~i~~~~vl~a  381 (386)
T COG4175         339 TVDADTPLSEILARIRQA---PCPVAVVDEDGRYVGIISRGELLEA  381 (386)
T ss_pred             ccCccchHHHHHHHHhcC---CCceeEEcCCCcEEEEecHHHHHHH
Confidence            899999999999998876   5678999999999999999998864

>COG0517 FOG: CBS domain [General function prediction only]

Probab=97.28  E-value=0.00059  Score=51.52  Aligned_cols=52  Identities=21%  Similarity=0.309  Sum_probs=46.6

Q ss_pred             hhhhccccCCCCccccCCCcHHHHHHHHHh-cCcceEEEEcCCC-cEEEEeeHHHH
Q 019775          210 KVQDVMKPQKELPVCKEGDLIMDQLVELTS-KGCGCLLVIDEEY-HLIGTFTDGDL  263 (336)
Q Consensus       210 ~v~~im~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~ipVvd~~~-~~~G~it~~dl  263 (336)
                      ++.++|...  ++++.++.++.++...|.+ ++.+.+||+++++ +++|++|..|+
T Consensus        63 ~v~~v~~~~--~~~~~~~~~~~~~~~~m~~~~~~~~lpVv~~~~~~lvGivt~~di  116 (117)
T COG0517          63 PVKEVMTKP--VVTVDPDTPLEEALELMVERHKIRRLPVVDDDGGKLVGIITLSDI  116 (117)
T ss_pred             cHHHhccCC--cEEECCCCCHHHHHHHHHHHcCcCeEEEEECCCCeEEEEEEHHHc
Confidence            677888864  5589999999999999999 7999999999886 99999999986

>PRK14097 pgi glucose-6-phosphate isomerase; Provisional

Probab=97.27  E-value=0.0044  Score=58.55  Aligned_cols=114  Identities=21%  Similarity=0.178  Sum_probs=72.5

Q ss_pred             HHHHHHHHcCCCeEEEEeccchHHHHHHHHHHHHh----c-------CCeeeecC---CccccccccCCC-CCCcEEEEE
Q 019775           44 LTFTQTLLKCRGTIFFTGVGKSGFVANKISQTLIS----L-------GIKSGFLN---PLDALHGDIGIL-SSDDILVMF  108 (336)
Q Consensus        44 ~~~~~~i~~a~~~I~i~G~G~s~~~a~~~~~~l~~----~-------g~~~~~~~---~~~~~~~~~~~~-~~~dlvi~i  108 (336)
                      .++++.+.+..+.|.++|.|.|+.=++.+...|..    .       +.+++++.   +...+...+..+ .++.+++++
T Consensus        63 ~~~~~~~~~~~~~vV~IGIGGS~LG~~al~~al~~~~~~~~~~~~~~~~~~~f~~dn~Dp~~~~~~l~~l~~~~tl~iVi  142 (448)
T PRK14097         63 KKAAEKIKSDSDVLVVIGIGGSYLGARAAIEFLNHSFYNLLPKEQRKAPQIIFAGNSISSTYLADLLEYLKDKDFSINVI  142 (448)
T ss_pred             HHHHHHHhcCCCEEEEEecCcchhhHHHHHHHhhhhhcccccccccCCccEEEecCCCCHHHHHHHHhhCCCCcEEEEEE
Confidence            34455444322599999999998766665555532    1       23454442   344444444444 356789999


Q ss_pred             eCCCCcHHHHHHHHHHH----Hc-CC-----eEEEEeCCCCCccccccCE----EEEcCCCcc
Q 019775          109 SKSGNTEELLKVVPCAK----AK-GA-----YLVSVTSVEGNALAAVCDM----NVHLPVERE  157 (336)
Q Consensus       109 S~sG~~~~~~~~~~~ak----~~-g~-----~vi~IT~~~~s~l~~~ad~----~i~~~~~~~  157 (336)
                      |.||.|.|+....+.++    ++ |.     .+++||+...+.+...|+.    ++.+|..-.
T Consensus       143 SKSGtT~ET~~~~~~~~~~l~~~~g~~~~~~~~v~iTd~~~~~L~~~a~~~g~~~f~ip~~VG  205 (448)
T PRK14097        143 SKSGTTTEPAIAFRIFKELLEKKYGKEEAKKRIYATTDKAKGALKTLADAEGYETFVIPDDVG  205 (448)
T ss_pred             eCCCCCHHHHHHHHHHHHHHHHhcCcccccceEEEEeCCCchHhhccchhcCcCEEeCCCCCC
Confidence            99999999888776544    21 31     3888898777678888873    677766543

>cd02205 CBS_pair The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.21  E-value=0.00095  Score=49.52  Aligned_cols=53  Identities=26%  Similarity=0.354  Sum_probs=46.2

Q ss_pred             hhhccccCCCCccccCCCcHHHHHHHHHhcCcceEEEEcCCCcEEEEeeHHHHHH
Q 019775          211 VQDVMKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRR  265 (336)
Q Consensus       211 v~~im~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~it~~dl~~  265 (336)
                      +.++|...  .+.+.++.++.++.+.|.+.+...+||++++++++|+++..++..
T Consensus        60 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~i~~~dl~~  112 (113)
T cd02205          60 VGDVMTRD--VVTVSPDTSLEEAAELMLEHGIRRLPVVDDEGRLVGIVTRSDILR  112 (113)
T ss_pred             HHHHhcCC--ceecCCCcCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEHHHhhc
Confidence            45667665  458899999999999999999999999998899999999999864

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generali

>cd04598 CBS_pair_GGDEF_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain

Probab=97.19  E-value=0.0007  Score=51.38  Aligned_cols=54  Identities=22%  Similarity=0.226  Sum_probs=45.1

Q ss_pred             hhhhccccCCCCccccCCCcHHHHHHHHHhcCcc---eEEEEcCCCcEEEEeeHHHHHH
Q 019775          210 KVQDVMKPQKELPVCKEGDLIMDQLVELTSKGCG---CLLVIDEEYHLIGTFTDGDLRR  265 (336)
Q Consensus       210 ~v~~im~~~~~~~~~~~~~~v~~~~~~~~~~~~~---~ipVvd~~~~~~G~it~~dl~~  265 (336)
                      +++++|.+.  ++++++++++.+++..|.+++..   ..||++++|+++|+|+..++..
T Consensus        62 ~v~~~~~~~--~~~v~~~~~~~~~~~~~~~~~~~~~~~~~vv~~~~~~~Gvvs~~di~~  118 (119)
T cd04598          62 PVSEVMDPD--PLIVEADTPLEEVSRLATGRDSQNLYDGFIVTEEGRYLGIGTVKDLLR  118 (119)
T ss_pred             cHHHhcCCC--cEEecCCCCHHHHHHHHHcCCcccccccEEEeeCCeEEEEEEHHHHhc
Confidence            477888876  45899999999999999887753   4468888899999999999864

The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>TIGR03520 GldE gliding motility-associated protein GldE

Probab=97.18  E-value=0.0014  Score=61.43  Aligned_cols=93  Identities=13%  Similarity=0.081  Sum_probs=69.3

Q ss_pred             hhhhccccCCCCccccCCCcHHHHHHHHHhcCcceEEEEcCCCcEEEEeeHHHHHHHHHhcCCchhhhhHhhhc---CCC
Q 019775          210 KVQDVMKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRRTLKASGEGIFKLTVGEMC---NRS  286 (336)
Q Consensus       210 ~v~~im~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~it~~dl~~~~~~~~~~~~~~~i~~~~---~~~  286 (336)
                      +++++|++   ...++++.++.++++.|.+++....+|+|+.|...|+||.+|++..+..+-.+..+ .-.+.+   ...
T Consensus       256 ~l~~~~~~---~~~Vpe~~~l~~ll~~m~~~~~~~aiVvDE~G~~~GiVT~eDileeivgei~de~d-~~~~~i~~~~~~  331 (408)
T TIGR03520       256 DWQSLLRE---PYFVPENKKLDDLLRDFQEKKNHLAIVVDEYGGTSGLVTLEDIIEEIVGDISDEFD-DEDLIYSKIDDN  331 (408)
T ss_pred             CHHHHcCC---CeEeCCCCcHHHHHHHHHhcCceEEEEEcCCCCEEEEEEHHHHHHHHhCCCCCcCC-cCccceEEeCCC
Confidence            45677876   34899999999999999999999999999889999999999999988643221111 111111   233


Q ss_pred             CeeeCCCccHHHHHHHhcCC
Q 019775          287 PRTIGPDAMAVEAMQKMESP  306 (336)
Q Consensus       287 ~~~v~~~~~l~~~~~~~~~~  306 (336)
                      ...+....++.++.+.|.-.
T Consensus       332 ~~~v~G~~~l~~l~~~l~~~  351 (408)
T TIGR03520       332 NYVFEGKTSLKDFYKILKLE  351 (408)
T ss_pred             eEEEEeccCHHHHHHHhCCC
Confidence            46677788999998887543

Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldC is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. GldE was discovered because of its adjacency to GldD in F. johnsonii. Overexpression of GldE partially supresses the effects of a GldB point mutant suggesting that GldB and GldE interact. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Not all Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility and in fact some do not appear to express the gliding phenotype.

>TIGR01137 cysta_beta cystathionine beta-synthase

Probab=97.17  E-value=0.00074  Score=64.41  Aligned_cols=56  Identities=27%  Similarity=0.405  Sum_probs=51.3

Q ss_pred             hhhHhhhcCCCCeeeCCCccHHHHHHHhcCCCCCccEeEEEeCCCcEEEEEehhhHhh
Q 019775          276 KLTVGEMCNRSPRTIGPDAMAVEAMQKMESPPSPVQFLPVINRQNILIGIVTLHGLVS  333 (336)
Q Consensus       276 ~~~i~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~l~Vv~~~~~~iGiit~~di~~  333 (336)
                      ..++.++|.+++..+.+++++.++++.|.++  +...+||+|++|+++|+|+..|+++
T Consensus       334 ~~~v~~im~~~~~~v~~~~tl~ea~~~m~~~--~~~~~~Vvd~~~~~~Givt~~dl~~  389 (454)
T TIGR01137       334 NATVKDLHLPAPVTVHPTETVGDAIEILREY--GFDQLPVVTEAGKVLGSVTLRELLS  389 (454)
T ss_pred             cCCHHHhCcCCCeEECCCCcHHHHHHHHHHc--CCCEEEEEcCCCeEEEEEEHHHHHH
Confidence            4678999999999999999999999999988  7889999998899999999999876

Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven.

>cd04634 CBS_pair_21 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.15  E-value=0.00088  Score=53.01  Aligned_cols=55  Identities=24%  Similarity=0.317  Sum_probs=48.1

Q ss_pred             hhhhhhccccCCCCccccCCCcHHHHHHHHHhcCcceEEEEcCCCcEEEEeeHHHHHH
Q 019775          208 IFKVQDVMKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRR  265 (336)
Q Consensus       208 ~~~v~~im~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~it~~dl~~  265 (336)
                      ..++.++|.+.  ++++++++++.+++..|.+.+...+||+++ ++++|+++.+|+..
T Consensus        88 ~~~v~~~~~~~--~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~-~~~~Gvvt~~dl~~  142 (143)
T cd04634          88 KMKVRDIMTKK--VITISPDASIEDAAELMVRHKIKRLPVVED-GRLVGIVTRGDIIE  142 (143)
T ss_pred             cCCHHHHcCCC--CeEECCCCcHHHHHHHHHHcCCCEEEEEEC-CEEEEEEEHHHhhc
Confidence            34677888776  559999999999999999999999999987 89999999999863

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04638 CBS_pair_25 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.14  E-value=0.0012  Score=49.03  Aligned_cols=52  Identities=19%  Similarity=0.267  Sum_probs=44.4

Q ss_pred             hhhccccCCCCccccCCCcHHHHHHHHHhcCcceEEEEcCCCcEEEEeeHHHHHH
Q 019775          211 VQDVMKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRR  265 (336)
Q Consensus       211 v~~im~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~it~~dl~~  265 (336)
                      +.++|...  .++++.++++.++++.|.+.+...+||++ +|+++|+++..++..
T Consensus        54 ~~~~~~~~--~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd-~~~~~G~it~~d~~~  105 (106)
T cd04638          54 LALLMTRD--PPTVSPDDDVKEAAKLMVENNIRRVPVVD-DGKLVGIVTVADIVR  105 (106)
T ss_pred             HHHHhcCC--CceECCCCCHHHHHHHHHHcCCCEEEEEE-CCEEEEEEEHHHhhc
Confidence            45667665  45889999999999999999999999998 479999999998864

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase

Probab=97.00  E-value=0.0012  Score=62.74  Aligned_cols=58  Identities=28%  Similarity=0.310  Sum_probs=51.4

Q ss_pred             hhhhccccCCCCccccCCCcHHHHHHHHHhcCcceEEEEcCCCcEEEEeeHHHHHHHHH
Q 019775          210 KVQDVMKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRRTLK  268 (336)
Q Consensus       210 ~v~~im~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~it~~dl~~~~~  268 (336)
                      +++++|.+. .+++++++.++.++++.|.+++...+||+|++|+++|+||.+|++..+.
T Consensus       144 ~V~dvm~~~-~~~~V~~~~sl~eal~~m~~~~~~~lpVVDe~G~lvGiVT~~DIl~~~~  201 (450)
T TIGR01302       144 PVSEVMTRE-EVITVPEGIDLEEALKVLHEHRIEKLPVVDKNGELVGLITMKDIVKRRK  201 (450)
T ss_pred             CHHHhhCCC-CCEEECCCCcHHHHHHHHHHcCCCeEEEEcCCCcEEEEEEhHHhhhccc
Confidence            577889841 2568999999999999999999999999999999999999999998754

This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.

>cd04609 CBS_pair_PALP_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream

Probab=96.97  E-value=0.0016  Score=48.46  Aligned_cols=46  Identities=24%  Similarity=0.444  Sum_probs=41.1

Q ss_pred             CCeeeCCCccHHHHHHHhcCCCCCccEeEEEeCCCcEEEEEehhhHhhc
Q 019775          286 SPRTIGPDAMAVEAMQKMESPPSPVQFLPVINRQNILIGIVTLHGLVSA  334 (336)
Q Consensus       286 ~~~~v~~~~~l~~~~~~~~~~~~~~~~l~Vv~~~~~~iGiit~~di~~~  334 (336)
                      ++..+..++++.++.+.|.+.  +...+||+++ |+++|+++..|+.+.
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~--~~~~~~V~~~-~~~~G~v~~~dl~~~   47 (110)
T cd04609           2 DVVSVAPDDTVSQAIERMREY--GVSQLPVVDD-GRVVGSIDESDLLDA   47 (110)
T ss_pred             CcEEECCCCcHHHHHHHHHHc--CCceeeEeeC-CeeEEEEeHHHHHHH
Confidence            356789999999999999988  8889999998 999999999998864

The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a pote

>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]

Probab=96.89  E-value=0.0016  Score=61.26  Aligned_cols=62  Identities=21%  Similarity=0.325  Sum_probs=55.4

Q ss_pred             hhhhhhhhhccccCCCCccccCCCcHHHHHHHHHhcCcceEEEEcCCCcEEEEeeHHHHHHHHHh
Q 019775          205 KSLIFKVQDVMKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRRTLKA  269 (336)
Q Consensus       205 ~~~~~~v~~im~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~it~~dl~~~~~~  269 (336)
                      .+...+|+++|..+  +++++.++-+-+|+-.|.++++.++||++ +|+++|++|..||+....+
T Consensus       210 ~~~~~~V~evmT~p--~~svd~~~~~feAml~m~r~~I~hl~V~e-~gq~~Gilt~~dIl~l~s~  271 (610)
T COG2905         210 RSKTQKVSEVMTSP--VISVDRGDFLFEAMLMMLRNRIKHLPVTE-DGQPLGILTLTDILRLFSQ  271 (610)
T ss_pred             CCcccchhhhhccC--ceeecCcchHHHHHHHHHHhCCceeeeec-CCeeeEEeeHHHHHHhhCC
Confidence            34567899999987  56999999999999999999999999997 7899999999999987754

>TIGR01012 Sa_S2_E_A ribosomal protein Sa(cytosolic)/S2(archaeal)

Probab=96.88  E-value=0.051  Score=45.17  Aligned_cols=114  Identities=11%  Similarity=0.092  Sum_probs=72.8

Q ss_pred             CeEEEEeccchH-HHHHHHHHHHHhcCCeeeecCC-ccccccccCCCCCCcEEEEEeCCCCcHHHHHHHHHHHHcCCeEE
Q 019775           55 GTIFFTGVGKSG-FVANKISQTLISLGIKSGFLNP-LDALHGDIGILSSDDILVMFSKSGNTEELLKVVPCAKAKGAYLV  132 (336)
Q Consensus        55 ~~I~i~G~G~s~-~~a~~~~~~l~~~g~~~~~~~~-~~~~~~~~~~~~~~dlvi~iS~sG~~~~~~~~~~~ak~~g~~vi  132 (336)
                      ++|.++|+.... .+.+.++.+.......-..+++ .+.+.  .......|++|++....+    ..+++.|.+.|+++|
T Consensus        62 ~~ILfVgtk~~~~~~V~~~A~~~g~~~v~~RWlgGtLTN~~--~~~~~~Pdlliv~dp~~~----~~Av~EA~~l~IP~I  135 (196)
T TIGR01012        62 EDILVVSARIYGQKPVLKFAKVTGARAIAGRFTPGTFTNPM--QKAFREPEVVVVTDPRAD----HQALKEASEVGIPIV  135 (196)
T ss_pred             CeEEEEecCHHHHHHHHHHHHHhCCceECCeeCCCCCCCcc--ccccCCCCEEEEECCccc----cHHHHHHHHcCCCEE
Confidence            589999998633 4455555555433333334432 11111  123567888888754433    456788899999999


Q ss_pred             EEeCCCCCccccccCEEEEcCCCcccCCCCCCChhHHHHHHHHHHHHHHHHHhhcC
Q 019775          133 SVTSVEGNALAAVCDMNVHLPVERELCPFDLAPVTSTAIQMVFGDTVAIAMMGARN  188 (336)
Q Consensus       133 ~IT~~~~s~l~~~ad~~i~~~~~~~~~~~~~~~~~s~~~~~~l~d~l~~~~~~~~~  188 (336)
                      +|++....|  ++.|+.|.+  +..          |.-+.-+++.+|...+...++
T Consensus       136 ai~DTn~dp--~~vdypIP~--Ndd----------s~~Si~li~~lla~ail~~~g  177 (196)
T TIGR01012       136 ALCDTDNPL--RYVDLVIPT--NNK----------GRHSLALIYWLLAREILRMRG  177 (196)
T ss_pred             EEeeCCCCC--ccCCEEECC--CCc----------hHHHHHHHHHHHHHHHHHhhC
Confidence            999875554  557776554  433          556667888888888887764

TIGR01011 describes the related protein of organelles and bacteria.

>COG2239 MgtE Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism]

Probab=96.86  E-value=0.0037  Score=58.69  Aligned_cols=62  Identities=18%  Similarity=0.142  Sum_probs=56.4

Q ss_pred             hhhhhhhccccCCCCccccCCCcHHHHHHHHHhcCcceEEEEcCCCcEEEEeeHHHHHHHHHhc
Q 019775          207 LIFKVQDVMKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRRTLKAS  270 (336)
Q Consensus       207 ~~~~v~~im~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~it~~dl~~~~~~~  270 (336)
                      ...+++++|.+.  ++.+.+++.-+++.+.+.+++.-.+||+|++++++|++|..|+...+.++
T Consensus       194 ~~~~i~~im~~~--~~~V~~~~dqeevA~~~~~ydl~a~PVVd~~~~LiG~itiDDiidvi~eE  255 (451)
T COG2239         194 PDELLKDLMEDD--VVSVLADDDQEEVARLFEKYDLLAVPVVDEDNRLIGIITIDDIIDVIEEE  255 (451)
T ss_pred             cHhHHHHHhccc--ceeecccCCHHHHHHHHHHhCCeecceECCCCceeeeeeHHHHHHHHHHH
Confidence            356889999998  45899999999999999999999999999999999999999999988653

>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit

Probab=96.82  E-value=0.0034  Score=57.82  Aligned_cols=56  Identities=27%  Similarity=0.453  Sum_probs=48.4

Q ss_pred             hhhccccCCCCccccCCCcHHHHHHHHHhcCcceEEEEcCCCcEEEEeeHHHHHHHHHh
Q 019775          211 VQDVMKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRRTLKA  269 (336)
Q Consensus       211 v~~im~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~it~~dl~~~~~~  269 (336)
                      +.+.+.+.  +++++++.++.+++..+.++++. +||+|++|+++|+|+..++...+..
T Consensus       304 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~g~i~~~~~~~~~~~  359 (363)
T TIGR01186       304 LQDVLIDD--IYTVDAGTLLRETVRKVLKAGIK-VPVVDEDQRLVGIVTRGSLVDALYD  359 (363)
T ss_pred             hhhhhccC--CceECCCCcHHHHHHHHHhCCCC-EEEECCCCcEEEEEEHHHHHHHHHh
Confidence            34455554  55899999999999999999988 9999999999999999999988764

This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact

>PRK04020 rps2P 30S ribosomal protein S2; Provisional

Probab=96.73  E-value=0.099  Score=43.77  Aligned_cols=127  Identities=13%  Similarity=0.110  Sum_probs=75.3

Q ss_pred             HHHHHHHHHc-CCCeEEEEeccchH-HHHHHHHHHHHhcCCeeeecCCccccccccCCCCCCcEEEEEeCCCCcHHHHHH
Q 019775           43 TLTFTQTLLK-CRGTIFFTGVGKSG-FVANKISQTLISLGIKSGFLNPLDALHGDIGILSSDDILVMFSKSGNTEELLKV  120 (336)
Q Consensus        43 i~~~~~~i~~-a~~~I~i~G~G~s~-~~a~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~dlvi~iS~sG~~~~~~~~  120 (336)
                      +..+++.+.+ .+++|.++|+.... .+...++.+....-..-..+++ ..--.........|++|++....+    ..+
T Consensus        55 L~~A~~~i~~~~~~~ILfVgTk~~~~~~v~k~A~~~g~~~v~~RWlgG-~LTN~~~~~~~~Pdliiv~dp~~~----~~A  129 (204)
T PRK04020         55 IRIAAKFLSRYEPEKILVVSSRQYGQKPVQKFAEVVGAKAITGRFIPG-TLTNPSLKGYIEPDVVVVTDPRGD----AQA  129 (204)
T ss_pred             HHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHhCCeeecCccCCC-cCcCcchhccCCCCEEEEECCccc----HHH
Confidence            4444444432 22689999987643 4444444444322111122322 111111222346799888887555    566


Q ss_pred             HHHHHHcCCeEEEEeCCCCCccccccCEEEEcCCCcccCCCCCCChhHHHHHHHHHHHHHHHHHhhcC
Q 019775          121 VPCAKAKGAYLVSVTSVEGNALAAVCDMNVHLPVERELCPFDLAPVTSTAIQMVFGDTVAIAMMGARN  188 (336)
Q Consensus       121 ~~~ak~~g~~vi~IT~~~~s~l~~~ad~~i~~~~~~~~~~~~~~~~~s~~~~~~l~d~l~~~~~~~~~  188 (336)
                      ++.|.+.|+++|+|++....|  ++.|+.|.+..  .          |.-+.-+++.+|...+...++
T Consensus       130 I~EA~kl~IP~IaivDTn~dp--~~VdypIP~Nd--d----------s~~SI~li~~ll~~aIl~~kg  183 (204)
T PRK04020        130 VKEAIEVGIPVVALCDTDNLT--SNVDLVIPTNN--K----------GRKALALVYWLLAREILRERG  183 (204)
T ss_pred             HHHHHHhCCCEEEEEeCCCCc--ccCceeECCCC--c----------hHHHHHHHHHHHHHHHHHhhC
Confidence            788899999999999875555  56777755433  3          445566788888887777754

>PF00342 PGI: Phosphoglucose isomerase The structure is C alpha atoms only with no sequence assignment

Probab=96.63  E-value=0.013  Score=55.90  Aligned_cols=101  Identities=23%  Similarity=0.243  Sum_probs=69.1

Q ss_pred             CeEEEEeccchHHHHHHHHHHHHhcC---CeeeecC--CccccccccCCCCCC-cEEEEEeCCCCcHHHHHHHHHHHH--
Q 019775           55 GTIFFTGVGKSGFVANKISQTLISLG---IKSGFLN--PLDALHGDIGILSSD-DILVMFSKSGNTEELLKVVPCAKA--  126 (336)
Q Consensus        55 ~~I~i~G~G~s~~~a~~~~~~l~~~g---~~~~~~~--~~~~~~~~~~~~~~~-dlvi~iS~sG~~~~~~~~~~~ak~--  126 (336)
                      +.|.++|.|.|+.=.+.+...|....   ..++++.  +...+...+..+++. .+++++|.||.|.|+....+.+++  
T Consensus        97 ~~vV~IGIGGS~LGp~~~~~al~~~~~~~~~~~f~~n~Dp~~l~~~l~~ld~~~Tl~iViSKSgtT~ET~~n~~~~~~~l  176 (486)
T PF00342_consen   97 TDVVVIGIGGSSLGPRALYEALKPYFSNPPRLHFLDNVDPADLARLLERLDPETTLFIVISKSGTTIETLANFRIAREWL  176 (486)
T ss_dssp             SEEEEE--GGGTHHHHHHHHHTGGGTTSSCEEEEESSSSHHHHHHHHTTSTGGGEEEEEEESSST-HHHHHHHHHHHHHH
T ss_pred             eEEEEEecchhhHHHHHHHHHhhhhcccceEEEEeccCChHHHHHHHhcCCCccEEEEEecCCCCCHHHHHHHHHHHHHH
Confidence            58999999999988888888887653   5677777  455555556666664 678999999999999987776654  


Q ss_pred             --c-------CCeEEEEeCCCCCcccccc--CEEEEcCCC
Q 019775          127 --K-------GAYLVSVTSVEGNALAAVC--DMNVHLPVE  155 (336)
Q Consensus       127 --~-------g~~vi~IT~~~~s~l~~~a--d~~i~~~~~  155 (336)
                        +       +-.+|+||++........+  +.+|.++..
T Consensus       177 ~~~~~~~~~~~~h~vavT~~~~~~~~~~~~~~~~f~~~d~  216 (486)
T PF00342_consen  177 EKKGGDKEEAAKHFVAVTDNGSGALKFGIDEENIFPIPDW  216 (486)
T ss_dssp             HHHHHSGGGGGGTEEEEESSHHHHHHHTHHGGGEEE--TT
T ss_pred             HhhcCccccccceEEEeCCCchHHHHHHHHHhcceecccc
Confidence              2       2469999988665543333  366666554

; InterPro: IPR001672 Phosphoglucose isomerase (5.3.1.9 from EC) (PGI) [, ] is a dimeric enzyme that catalyses the reversible isomerization of glucose-6-phosphate and fructose-6-phosphate. PGI is involved in different pathways: in most higher organisms it is involved in glycolysis; in mammals it is involved in gluconeogenesis; in plants in carbohydrate biosynthesis; in some bacteria it provides a gateway for fructose into the Entner-Doudouroff pathway. The multifunctional protein, PGI, is also known as neuroleukin (a neurotrophic factor that mediates the differentiation of neurons), autocrine motility factor (a tumour-secreted cytokine that regulates cell motility), differentiation and maturation mediator and myofibril-bound serine proteinase inhibitor, and has different roles inside and outside the cell. In the cytoplasm, it catalyses the second step in glycolysis, while outside the cell it serves as a nerve growth factor and cytokine []. PGI from Bacillus stearothermophilus has an open twisted alpha/beta structural motif consisting of two globular domains and two protruding parts. It has been suggested that the top part of the large domain together with one of the protruding loops might participate in inducing the neurotrophic activity []. The structure of rabbit muscle phosphoglucose isomerase complexed with various inhibitors shows that the enzyme is a dimer with two alpha/beta-sandwich domains in each subunit. The location of the bound D-gluconate 6-phosphate inhibitor leads to the identification of residues involved in substrate specificity. In addition, the positions of amino acid residues that are substituted in the genetic disease nonspherocytic hemolytic anemia suggest how these substitutions can result in altered catalysis or protein stability [, ].; GO: 0004347 glucose-6-phosphate isomerase activity, 0006094 gluconeogenesis, 0006096 glycolysis; PDB: 1ZZG_B 1JIQ_A 1IRI_B 1IAT_A 1JLH_C 1NUH_A 1KOJ_A 1HOX_A 1G98_B 1DQR_A ....

>PTZ00254 40S ribosomal protein SA; Provisional

Probab=96.61  E-value=0.068  Score=45.97  Aligned_cols=119  Identities=9%  Similarity=0.024  Sum_probs=71.8

Q ss_pred             HHcCCCeEEEEeccchH-HHHHHHHHHHHhcCCeeeecCCccccccccCCCCCCcEEEEEeCCCCcHHHHHHHHHHHHcC
Q 019775           50 LLKCRGTIFFTGVGKSG-FVANKISQTLISLGIKSGFLNPLDALHGDIGILSSDDILVMFSKSGNTEELLKVVPCAKAKG  128 (336)
Q Consensus        50 i~~a~~~I~i~G~G~s~-~~a~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~dlvi~iS~sG~~~~~~~~~~~ak~~g  128 (336)
                      +.+. +.|.++|+.... .+...++.+....-+.=..++ +..--.........|++|++....+    ..+++.|...|
T Consensus        68 i~~~-~~Il~Vstr~~~~~~V~k~A~~tg~~~i~~Rw~p-GtlTN~~~~~f~~P~llIV~Dp~~d----~qAI~EA~~ln  141 (249)
T PTZ00254         68 IENP-ADVVVVSSRPYGQRAVLKFAQYTGASAIAGRFTP-GTFTNQIQKKFMEPRLLIVTDPRTD----HQAIREASYVN  141 (249)
T ss_pred             HhCC-CcEEEEEcCHHHHHHHHHHHHHhCCeEECCcccC-CCCCCccccccCCCCEEEEeCCCcc----hHHHHHHHHhC
Confidence            3455 589999987633 344444444432211112232 2111112234567788888764333    45678888999


Q ss_pred             CeEEEEeCCCCCccccccCEEEEcCCCcccCCCCCCChhHHHHHHHHHHHHHHHHHhhcC
Q 019775          129 AYLVSVTSVEGNALAAVCDMNVHLPVERELCPFDLAPVTSTAIQMVFGDTVAIAMMGARN  188 (336)
Q Consensus       129 ~~vi~IT~~~~s~l~~~ad~~i~~~~~~~~~~~~~~~~~s~~~~~~l~d~l~~~~~~~~~  188 (336)
                      ++||+|++. ++++ .+.|+.|.+..  .          |.-+.-+++.+|...+...++
T Consensus       142 IPvIal~DT-ds~p-~~VDy~IP~Nd--d----------s~~SI~li~~lLar~Vl~~rG  187 (249)
T PTZ00254        142 IPVIALCDT-DSPL-EYVDIAIPCNN--R----------GKESIALMYWLLAREVLRLRG  187 (249)
T ss_pred             CCEEEEecC-CCCc-ccCceeeCCCC--c----------hHHHHHHHHHHHHHHHHHhhC
Confidence            999999986 5554 55777765544  3          445567778888888777765

>PRK00179 pgi glucose-6-phosphate isomerase; Reviewed

Probab=96.57  E-value=0.03  Score=54.15  Aligned_cols=114  Identities=18%  Similarity=0.188  Sum_probs=73.7

Q ss_pred             hHHHHHHHHHHc----------CCCeEEEEeccchHHHHHHHHHHHHhc---CCeeeecC--CccccccccCCCC-CCcE
Q 019775           41 PHTLTFTQTLLK----------CRGTIFFTGVGKSGFVANKISQTLISL---GIKSGFLN--PLDALHGDIGILS-SDDI  104 (336)
Q Consensus        41 ~~i~~~~~~i~~----------a~~~I~i~G~G~s~~~a~~~~~~l~~~---g~~~~~~~--~~~~~~~~~~~~~-~~dl  104 (336)
                      +.++++++.+.+          - +.|.++|.|.|+.=.+.+...|...   +.+++++.  |...+...+..++ ++.+
T Consensus       123 ~~~~~f~~~i~~g~~~g~~g~~~-~~vV~IGIGGS~LGp~~~~~al~~~~~~~~~l~fl~nvDp~~~~~~l~~l~~~~TL  201 (548)
T PRK00179        123 ARMKAFAEAVRSGEWKGYTGKAI-TDVVNIGIGGSDLGPVMVTEALRPYADPGLRVHFVSNVDGAHLAETLKKLDPETTL  201 (548)
T ss_pred             HHHHHHHHHHHhCCccCCCCCcc-CeEEEECCCcchHHHHHHHHHhhhhccCCCceEEEeCCCHHHHHHHHhcCCcccEE
Confidence            466777777764          3 5899999999997777776666532   44566665  3444444444444 4568


Q ss_pred             EEEEeCCCCcHHHHHHHHHHH----Hc-------CCeEEEEeCCCCCccccccCE---EEEcCCCc
Q 019775          105 LVMFSKSGNTEELLKVVPCAK----AK-------GAYLVSVTSVEGNALAAVCDM---NVHLPVER  156 (336)
Q Consensus       105 vi~iS~sG~~~~~~~~~~~ak----~~-------g~~vi~IT~~~~s~l~~~ad~---~i~~~~~~  156 (336)
                      +|++|.||.|.|+....+.++    ++       +-.+|+||++ .+++.+..--   +|.++..-
T Consensus       202 ~iViSKSgtT~ET~~n~~~~~~~l~~~~~~~~~~~~h~vaVT~~-~~~~~~~g~~~~~~F~~~d~V  266 (548)
T PRK00179        202 FIVASKTFTTQETLTNAHSARDWFLAAGGDEAAVAKHFVAVSTN-AEAVAEFGIDPDNMFGFWDWV  266 (548)
T ss_pred             EEEEeCCCCCHHHHHHHHHHHHHHHHhcCccccccceEEEEcCC-cHHHHHcCCchhcEEECCCCC
Confidence            999999999999986655443    22       2248898986 4445443322   66666543

>PLN02649 glucose-6-phosphate isomerase

Probab=96.41  E-value=0.019  Score=55.55  Aligned_cols=113  Identities=17%  Similarity=0.133  Sum_probs=73.9

Q ss_pred             hHHHHHHHHHHc----------CCCeEEEEeccchHHHHHHHHHHHHhc--------CCeeeecC--CccccccccCCCC
Q 019775           41 PHTLTFTQTLLK----------CRGTIFFTGVGKSGFVANKISQTLISL--------GIKSGFLN--PLDALHGDIGILS  100 (336)
Q Consensus        41 ~~i~~~~~~i~~----------a~~~I~i~G~G~s~~~a~~~~~~l~~~--------g~~~~~~~--~~~~~~~~~~~~~  100 (336)
                      +.+.++++.+.+          - +.|.++|.|.|+.=.+.+...|...        |.+++++.  |...+...+..++
T Consensus       125 ~r~~~f~~~vr~g~~~g~tg~~~-~~VV~IGIGGS~LGp~~v~~AL~~~~~~~~~~~~~~~~fv~NvDp~~~~~~l~~l~  203 (560)
T PLN02649        125 DKIKAFSEDVRSGKWKGATGKRF-TNVVSIGIGGSFLGPLFVHEALATDPEALKSAKGRKLRFLANVDPVDIARQIAQLD  203 (560)
T ss_pred             HHHHHHHHHHHcCCcccCCCCcc-ceEEEEecCcchHHHHHHHHHHhhhccccccccCCcEEEEeCCCHHHHHHHHhhCC
Confidence            456667777763          3 5899999999986666665555432        23566655  4444444454454


Q ss_pred             C-CcEEEEEeCCCCcHHHHHHHHHHHH----c------CCeEEEEeCCCCCccccccC----EEEEcCCCc
Q 019775          101 S-DDILVMFSKSGNTEELLKVVPCAKA----K------GAYLVSVTSVEGNALAAVCD----MNVHLPVER  156 (336)
Q Consensus       101 ~-~dlvi~iS~sG~~~~~~~~~~~ak~----~------g~~vi~IT~~~~s~l~~~ad----~~i~~~~~~  156 (336)
                      + ..++|++|.||.|.|+....+.+++    +      .-.+|+||.  ++++.+.+.    -+|.++...
T Consensus       204 p~~TL~iViSKSgtT~ET~~n~~~~r~~l~~~~g~~~~~~h~vavT~--~~~l~~~a~~~~~~~F~~~d~V  272 (560)
T PLN02649        204 PETTLVVVVSKTFTTAETMLNARTVRKWLRDALGGLAVAKHMVAVST--NLLLVNKFGIDPWNAFPFWDWV  272 (560)
T ss_pred             cccEEEEEEeCCCCCHHHHHHHHHHHHHHHhhcccccccceEEEECC--ChHHHHHhCcCCccEEeCCCCC
Confidence            4 5689999999999999888766553    2      224889994  445766665    356665543

>PTZ00430 glucose-6-phosphate isomerase; Provisional

Probab=96.21  E-value=0.031  Score=53.96  Aligned_cols=97  Identities=18%  Similarity=0.201  Sum_probs=65.3

Q ss_pred             hHHHHHHHHHHc----------CCCeEEEEeccchHHHHHHHHHHHHhc--------CCeeeecC--CccccccccCCCC
Q 019775           41 PHTLTFTQTLLK----------CRGTIFFTGVGKSGFVANKISQTLISL--------GIKSGFLN--PLDALHGDIGILS  100 (336)
Q Consensus        41 ~~i~~~~~~i~~----------a~~~I~i~G~G~s~~~a~~~~~~l~~~--------g~~~~~~~--~~~~~~~~~~~~~  100 (336)
                      +.++++++.+.+          - +.|.++|.|.|..=.+.+...|...        +.+++++.  |...+...+..++
T Consensus       120 ~~~~~f~~~v~~g~~~g~tg~~~-~~VV~IGIGGS~LGp~~v~~AL~~~~~~~~~~~~~~~~Fv~NvDp~~~~~~l~~ld  198 (552)
T PTZ00430        120 DRIKKFSDKIRSGEILGSTGKKL-KNVICIGIGGSYLGTEFVYEALRTYGEAREASKGRKLRFLANVDPIDVRRATEGLD  198 (552)
T ss_pred             HHHHHHHHHHHcCCccCCCCCee-ceEEEEcCCccchHHHHHHHHHhhcccccccccCCcEEEEeCCCHHHHHHHHhhCC
Confidence            456677777763          3 5899999999987666666666532        24566665  4444555555554


Q ss_pred             C-CcEEEEEeCCCCcHHHHHHHHHHHH----c-C------CeEEEEeCCC
Q 019775          101 S-DDILVMFSKSGNTEELLKVVPCAKA----K-G------AYLVSVTSVE  138 (336)
Q Consensus       101 ~-~dlvi~iS~sG~~~~~~~~~~~ak~----~-g------~~vi~IT~~~  138 (336)
                      + ..++|++|.||.|.|+....+.+++    + |      -..|+||++.
T Consensus       199 p~~TLfiViSKSgtT~ETl~n~~~~r~wl~~~~~~~~~~~~h~vavT~~~  248 (552)
T PTZ00430        199 PEETLVVIISKTFTTAETMLNAKTVRQWLLDNIKSKEALSKHLCAVSTNL  248 (552)
T ss_pred             cccEEEEEEeCCCCCHHHHHHHHHHHHHHHHhccccccccCeEEEEcCch
Confidence            4 5689999999999999866554432    2 1      2488999864

>cd01425 RPS2 Ribosomal protein S2 (RPS2), involved in formation of the translation initiation complex, where it might contact the messenger RNA and several components of the ribosome

Probab=96.21  E-value=0.22  Score=41.62  Aligned_cols=67  Identities=10%  Similarity=0.131  Sum_probs=45.9

Q ss_pred             CCCCcEEEEEeCCCCcHHHHHHHHHHHHcCCeEEEEeCCCCCccccccCEEEEcCCCcccCCCCCCChhHHHHHHHHHHH
Q 019775           99 LSSDDILVMFSKSGNTEELLKVVPCAKAKGAYLVSVTSVEGNALAAVCDMNVHLPVERELCPFDLAPVTSTAIQMVFGDT  178 (336)
Q Consensus        99 ~~~~dlvi~iS~sG~~~~~~~~~~~ak~~g~~vi~IT~~~~s~l~~~ad~~i~~~~~~~~~~~~~~~~~s~~~~~~l~d~  178 (336)
                      ....|++|++....+    ..++++|...|+++|++++....|  .+.|+.|.....            |.-+..+++.+
T Consensus       125 ~~~Pdlviv~~~~~~----~~ai~Ea~~l~IP~I~i~Dtn~~~--~~i~ypIP~Nd~------------s~~si~li~~~  186 (193)
T cd01425         125 FRLPDLVIVLDPRKE----HQAIREASKLGIPVIAIVDTNCDP--DLIDYPIPANDD------------SIRSIALILWL  186 (193)
T ss_pred             ccCCCEEEEeCCccc----hHHHHHHHHcCCCEEEEecCCCCC--ccceEEeecCCc------------hHHHHHHHHHH
Confidence            457899999975333    567889999999999999876433  456766655443            44555666666


Q ss_pred             HHHHH
Q 019775          179 VAIAM  183 (336)
Q Consensus       179 l~~~~  183 (336)
                      |...+
T Consensus       187 l~~ai  191 (193)
T cd01425         187 LARAI  191 (193)
T ss_pred             HHHHH
Confidence            65544

It has been shown that in Escherichia coli RPS2 is essential for the binding of ribosomal protein S1 to the 30s ribosomal subunit. In humans, most likely in all vertebrates, and perhaps in all metazoans, the protein also functions as the 67 kDa laminin receptor (LAMR1 or 67LR), which is formed from a 37 kDa precursor, and is overexpressed in many tumors. 67LR is a cell surface receptor which interacts with a variety of ligands, laminin-1 and others. It is assumed that the ligand interactions are mediated via the conserved C-terminus, which becomes extracellular as the protein undergoes conformational changes which are not well understood. Specifically, a conserved palindromic motif, LMWWML, may participate in the interactions. 67LR plays essential roles in the adhesion of cells to the basement membrane an

>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional

Probab=96.16  E-value=0.016  Score=54.13  Aligned_cols=57  Identities=18%  Similarity=0.324  Sum_probs=48.3

Q ss_pred             hhhccccCCCCccccCCCcHHHHHHHHHhcCcceEEEEcCCCcEEEEeeHHHHHHHHHhc
Q 019775          211 VQDVMKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRRTLKAS  270 (336)
Q Consensus       211 v~~im~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~it~~dl~~~~~~~  270 (336)
                      +.+.+.+.  .+++.+++++.+++..+.++... +||+|++|+++|+|+..++...+...
T Consensus       339 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~g~~~~~~~~~~~~~~  395 (400)
T PRK10070        339 LDAALIDA--PLAVDAQTPLSELLSHVGQAPCA-VPVVDEDQQYVGIISKGMLLRALDRE  395 (400)
T ss_pred             hhhhhccC--CceeCCCCCHHHHHHHHHhCCCc-EEEECCCCcEEEEEEHHHHHHHHHhc
Confidence            44555554  45899999999999999987766 99999999999999999999988653

>KOG0476 consensus Cl- channel CLC-2 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]

Probab=96.13  E-value=0.041  Score=53.83  Aligned_cols=97  Identities=10%  Similarity=0.103  Sum_probs=67.7

Q ss_pred             HHHHHHHHHHHHHHHhhcCCChHH-HhhcCCCC---chhh----hhhhhhhhccccCCCCccccCCCcHHHHHHHHHhcC
Q 019775          170 AIQMVFGDTVAIAMMGARNLTRDE-YAANHPAG---RIGK----SLIFKVQDVMKPQKELPVCKEGDLIMDQLVELTSKG  241 (336)
Q Consensus       170 ~~~~~l~d~l~~~~~~~~~~~~~~-~~~~~~~~---~~~~----~~~~~v~~im~~~~~~~~~~~~~~v~~~~~~~~~~~  241 (336)
                      +...++.-++..++++..+-+.-+ +.+..+-.   ++..    .-.+.|+++|..+  ++.+..+.|.+|..+.+....
T Consensus       541 iLPVmIAVllaNAVa~~LQPSiYDSII~IKklPYLPDlpps~~~~h~v~VE~iMV~d--v~yI~k~~Ty~elre~l~~~~  618 (931)
T KOG0476|consen  541 ILPVMIAVLLANAVAASLQPSIYDSIIRIKKLPYLPDLPPSRSSVHTVKVEHIMVTD--VKYITKDTTYRELREALQTTT  618 (931)
T ss_pred             HHHHHHHHHHHHHHHHHhCcchhhheeeeccCCcCCCCCCcccceeEEEeeeecccc--ceeeeccCcHHHHHHHHHhCc
Confidence            444455666777777776544333 22211111   1111    1267899999998  669999999999999888776


Q ss_pred             cceEEEEcCC--CcEEEEeeHHHHHHHHH
Q 019775          242 CGCLLVIDEE--YHLIGTFTDGDLRRTLK  268 (336)
Q Consensus       242 ~~~ipVvd~~--~~~~G~it~~dl~~~~~  268 (336)
                      .+.+|+||+.  .-++|.|.++.|...+.
T Consensus       619 lR~~PlV~s~esmiLlGSV~R~~L~~ll~  647 (931)
T KOG0476|consen  619 LRSFPLVESKESMILLGSVARRYLTALLQ  647 (931)
T ss_pred             cceeccccCcccceeeehhHHHHHHHHHH
Confidence            9999999943  46899999999987664

>PRK05299 rpsB 30S ribosomal protein S2; Provisional

Probab=95.83  E-value=0.23  Score=43.38  Aligned_cols=71  Identities=14%  Similarity=0.163  Sum_probs=51.6

Q ss_pred             CCCcEEEEEeCCCCcHHHHHHHHHHHHcCCeEEEEeCCCCCccccccCEEEEcCCCcccCCCCCCChhHHHHHHHHHHHH
Q 019775          100 SSDDILVMFSKSGNTEELLKVVPCAKAKGAYLVSVTSVEGNALAAVCDMNVHLPVERELCPFDLAPVTSTAIQMVFGDTV  179 (336)
Q Consensus       100 ~~~dlvi~iS~sG~~~~~~~~~~~ak~~g~~vi~IT~~~~s~l~~~ad~~i~~~~~~~~~~~~~~~~~s~~~~~~l~d~l  179 (336)
                      ...|++|++....+.    .++++|...|++||++.+....|  .+.|+.|....  .          |.-+.-+++.+|
T Consensus       156 ~~Pd~iii~d~~~~~----~ai~Ea~kl~IPiIaivDTn~dp--~~IdypIP~Nd--d----------s~~si~li~~~l  217 (258)
T PRK05299        156 GLPDALFVVDPNKEH----IAVKEARKLGIPVVAIVDTNCDP--DGVDYPIPGND--D----------AIRSIKLYTSKI  217 (258)
T ss_pred             cCCCEEEEeCCCccH----HHHHHHHHhCCCEEEEeeCCCCC--cccceeeecCC--c----------hHHHHHHHHHHH
Confidence            467999998876443    66788999999999999875544  45676665543  3          556667888888


Q ss_pred             HHHHHhhcC
Q 019775          180 AIAMMGARN  188 (336)
Q Consensus       180 ~~~~~~~~~  188 (336)
                      ...+.+.++
T Consensus       218 ~~ai~~g~~  226 (258)
T PRK05299        218 ADAILEGRQ  226 (258)
T ss_pred             HHHHHHHhh
Confidence            877777654

>cd02767 MopB_ydeP The MopB_ydeP CD includes a group of related uncharacterized bacterial molybdopterin-binding oxidoreductase-like domains with a putative molybdopterin cofactor binding site

Probab=95.68  E-value=0.2  Score=49.19  Aligned_cols=117  Identities=12%  Similarity=0.169  Sum_probs=67.9

Q ss_pred             hHHHHHHHHHHcC-CCeEEEEeccchHHHHHHHHHHHH-hcCCeeee-----cCCc--cccc---------cccCCCCCC
Q 019775           41 PHTLTFTQTLLKC-RGTIFFTGVGKSGFVANKISQTLI-SLGIKSGF-----LNPL--DALH---------GDIGILSSD  102 (336)
Q Consensus        41 ~~i~~~~~~i~~a-~~~I~i~G~G~s~~~a~~~~~~l~-~~g~~~~~-----~~~~--~~~~---------~~~~~~~~~  102 (336)
                      +.++.+++.+.+. ++.+.+++.|.+..-+.++..+|. .+|-+...     ....  ..+.         ..+..+..-
T Consensus        85 EAl~~IA~kL~~~~~~~~~~y~sg~~snE~~~l~q~f~r~lGt~n~~~~s~~C~~~~~~al~~~~G~~~~t~~~~Di~~a  164 (574)
T cd02767          85 EAFAEIAARLRALDPDRAAFYTSGRASNEAAYLYQLFARAYGTNNLPDCSNMCHEPSSVGLKKSIGVGKGTVSLEDFEHT  164 (574)
T ss_pred             HHHHHHHHHHhhhCCCcEEEEecCCCccHHHHHHHHHHHHhCCCCcCCCCCCcchHHHhHHHHhcCCCCCCCCHHHHhcC
Confidence            3455555555433 147888888765554445555554 34543211     1100  0000         011223456


Q ss_pred             cEEEEEeCC-CCc-HHHHHHHHHHHHcCCeEEEEeCCCCC----------------ccccccCEEEEcCCCcc
Q 019775          103 DILVMFSKS-GNT-EELLKVVPCAKAKGAYLVSVTSVEGN----------------ALAAVCDMNVHLPVERE  157 (336)
Q Consensus       103 dlvi~iS~s-G~~-~~~~~~~~~ak~~g~~vi~IT~~~~s----------------~l~~~ad~~i~~~~~~~  157 (336)
                      |++|++... +.+ +.+...++.|+++|+++|+|-.....                ..++.||..+.+..+.+
T Consensus       165 d~Il~~G~Np~~~~p~~~~~l~~A~~rGakIIvIdP~~~~gl~~f~~p~~~~~~lt~~a~~Ad~~l~irPGtD  237 (574)
T cd02767         165 DLIFFIGQNPGTNHPRMLHYLREAKKRGGKIIVINPLREPGLERFANPQNPESMLTGGTKIADEYFQVRIGGD  237 (574)
T ss_pred             CEEEEEcCChhhhcHHHHHHHHHHHHCCCEEEEECCCccccccccccccccccccccchhhhCeeeCCCCCcH
Confidence            888888554 433 55677788999999999999775431                33577899888876655

These members belong to the molybdopterin_binding (MopB) superfamily of proteins.

>PRK11573 hypothetical protein; Provisional

Probab=95.44  E-value=0.058  Score=50.69  Aligned_cols=91  Identities=20%  Similarity=0.155  Sum_probs=65.2

Q ss_pred             hhhccccCCCCccccCCCcHHHHHHHHHhcCcceEEEEcCCCcEEEEeeHHHHHHHHHhcCCchhhhh-Hhhhc--CCCC
Q 019775          211 VQDVMKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRRTLKASGEGIFKLT-VGEMC--NRSP  287 (336)
Q Consensus       211 v~~im~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~it~~dl~~~~~~~~~~~~~~~-i~~~~--~~~~  287 (336)
                      +.+++++   ...++.+.++.++++.|.+++.....|+|+-|...|+||.+|++..+...-.+..+.. ...+.  ...-
T Consensus       257 l~~~~r~---~~~Vpe~~~l~~lL~~~~~~~~~~AiVvDEyG~~~GiVTleDilEeivGei~de~d~~~~~~i~~~~~~~  333 (413)
T PRK11573        257 MLRAADE---IYFVPEGTPLSTQLVKFQRNKKKVGLVVDEYGDIQGLVTVEDILEEIVGDFTTSMSPTLAEEVTPQNDGS  333 (413)
T ss_pred             HHhhccC---CeEeCCCCcHHHHHHHHHhcCCeEEEEEecCCCeEEEeeHHHHHHHHhCCCCcccCcccccceEEecCCE
Confidence            4466666   3479999999999999999999899999999999999999999998875322111100 01111  1223


Q ss_pred             eeeCCCccHHHHHHHhc
Q 019775          288 RTIGPDAMAVEAMQKME  304 (336)
Q Consensus       288 ~~v~~~~~l~~~~~~~~  304 (336)
                      +.+....++.++-+.+.
T Consensus       334 ~~v~G~~~l~d~~~~l~  350 (413)
T PRK11573        334 VIIDGTANVREINKAFN  350 (413)
T ss_pred             EEEEeeeEHHHHHHHhC
Confidence            56777788888877763

>TIGR00315 cdhB CO dehydrogenase/acetyl-CoA synthase complex, epsilon subunit

Probab=95.42  E-value=0.22  Score=40.15  Aligned_cols=102  Identities=6%  Similarity=0.056  Sum_probs=66.9

Q ss_pred             HHHHHHHHcCCCeEEEEeccchH-HHHHHHHHHHHhcCCeeeecCCc------ccc-cc-----ccC---------CC--
Q 019775           44 LTFTQTLLKCRGTIFFTGVGKSG-FVANKISQTLISLGIKSGFLNPL------DAL-HG-----DIG---------IL--   99 (336)
Q Consensus        44 ~~~~~~i~~a~~~I~i~G~G~s~-~~a~~~~~~l~~~g~~~~~~~~~------~~~-~~-----~~~---------~~--   99 (336)
                      ++++++|.++++.++++|.|... ..++.+.....++|.++......      ... ..     .+.         .+  
T Consensus        18 ~~aa~lLk~AKRPvIivG~ga~~~~a~e~l~~laEklgiPVvtT~~~~~~~~~kgv~~~~~~lg~~g~~~~~p~~e~~~g   97 (162)
T TIGR00315        18 KLVAMMIKRAKRPLLIVGPENLEDEEKELIVKFIEKFDLPVVATADTYRALIEAGIESEEMNLHEITQFLADPSWEGFDG   97 (162)
T ss_pred             HHHHHHHHcCCCcEEEECCCcCcccHHHHHHHHHHHHCCCEEEcCccccccccCCeecCCCCHHHHHHhccCchhhhccC
Confidence            67788888888888999998753 55556555555678888765532      100 00     000         12  


Q ss_pred             -CCCcEEEEEeCCCC-cHHHHHHHHHHHHcCCeEEEEeCCCCCccccccCEEEE
Q 019775          100 -SSDDILVMFSKSGN-TEELLKVVPCAKAKGAYLVSVTSVEGNALAAVCDMNVH  151 (336)
Q Consensus       100 -~~~dlvi~iS~sG~-~~~~~~~~~~ak~~g~~vi~IT~~~~s~l~~~ad~~i~  151 (336)
                       .+-|++|++-.+=+ ...+++.+|...  ..++|+|+..    ..+.||+.|.
T Consensus        98 ~g~~DlvlfvG~~~y~~~~~ls~lk~f~--~~~~i~l~~~----y~pnA~~Sf~  145 (162)
T TIGR00315        98 EGNYDLVLFLGIIYYYLSQMLSSLKHFS--HIVTIAIDKY----YQPNADYSFP  145 (162)
T ss_pred             CCCcCEEEEeCCcchHHHHHHHHHHhhc--CcEEEEecCC----CCCCCceecc
Confidence             56788888855544 455888888666  6999999943    2566888763

Nomenclature follows the description for Methanosarcina thermophila. The complex is also found in Archaeoglobus fulgidus, not considered a methanogen, but is otherwise generally associated with methanogenesis.

>TIGR01011 rpsB_bact ribosomal protein S2, bacterial type

Probab=95.38  E-value=0.81  Score=39.17  Aligned_cols=70  Identities=13%  Similarity=0.164  Sum_probs=50.3

Q ss_pred             CCCcEEEEEeCCCCcHHHHHHHHHHHHcCCeEEEEeCCCCCccccccCEEEEcCCCcccCCCCCCChhHHHHHHHHHHHH
Q 019775          100 SSDDILVMFSKSGNTEELLKVVPCAKAKGAYLVSVTSVEGNALAAVCDMNVHLPVERELCPFDLAPVTSTAIQMVFGDTV  179 (336)
Q Consensus       100 ~~~dlvi~iS~sG~~~~~~~~~~~ak~~g~~vi~IT~~~~s~l~~~ad~~i~~~~~~~~~~~~~~~~~s~~~~~~l~d~l  179 (336)
                      ...|++|++....+    ..++++|...|+++|++.+....|  .+.|+.|.+...            |.-+..+++.+|
T Consensus       154 ~~Pd~vii~d~~~~----~~ai~Ea~~l~IP~I~ivDTn~~p--~~idypIP~Ndd------------s~~si~li~~~l  215 (225)
T TIGR01011       154 KLPDLLFVIDPVKE----KIAVAEARKLGIPVVAIVDTNCDP--DLVDYPIPGNDD------------AIRSIRLLTNLI  215 (225)
T ss_pred             cCCCEEEEeCCCcc----HHHHHHHHHcCCCEEEEeeCCCCC--cccceeeecCCc------------hHHHHHHHHHHH
Confidence            45789999887533    456788899999999999975554  457777665443            456667788887


Q ss_pred             HHHHHhhc
Q 019775          180 AIAMMGAR  187 (336)
Q Consensus       180 ~~~~~~~~  187 (336)
                      ...+.+.+
T Consensus       216 ~~ai~~g~  223 (225)
T TIGR01011       216 ADAVLEGK  223 (225)
T ss_pred             HHHHHHHh
Confidence            77776543

TIGR01012 describes the archaeal and cytosolic forms.

>PRK12311 rpsB 30S ribosomal protein S2/unknown domain fusion protein; Provisional

Probab=95.32  E-value=0.36  Score=43.55  Aligned_cols=69  Identities=12%  Similarity=0.117  Sum_probs=49.2

Q ss_pred             CCcEEEEEeCCCCcHHHHHHHHHHHHcCCeEEEEeCCCCCccccccCEEEEcCCCcccCCCCCCChhHHHHHHHHHHHHH
Q 019775          101 SDDILVMFSKSGNTEELLKVVPCAKAKGAYLVSVTSVEGNALAAVCDMNVHLPVERELCPFDLAPVTSTAIQMVFGDTVA  180 (336)
Q Consensus       101 ~~dlvi~iS~sG~~~~~~~~~~~ak~~g~~vi~IT~~~~s~l~~~ad~~i~~~~~~~~~~~~~~~~~s~~~~~~l~d~l~  180 (336)
                      ..|++|++....+    ..+++.|++.|++||+|.+....|  .+.||.|.+  +..          |.-+..+++++|.
T Consensus       152 ~Pd~viv~d~~~e----~~AI~EA~kl~IPvIaivDTn~dp--~~IdypIP~--NDd----------s~~si~li~~~la  213 (326)
T PRK12311        152 LPDLLFVIDTNKE----DIAIQEAQRLGIPVAAIVDTNCDP--DGITYPVPG--NDD----------AGRAIALYCDLIA  213 (326)
T ss_pred             CCCEEEEeCCccc----hHHHHHHHHcCCCEEEEeeCCCCc--cccceeecC--CCc----------hHHHHHHHHHHHH
Confidence            5789888887644    567789999999999999875544  456776554  433          4555667777777


Q ss_pred             HHHHhhc
Q 019775          181 IAMMGAR  187 (336)
Q Consensus       181 ~~~~~~~  187 (336)
                      ..+.+..
T Consensus       214 ~ai~~g~  220 (326)
T PRK12311        214 RAAIDGI  220 (326)
T ss_pred             HHHHHHH
Confidence            7776664

>TIGR01701 Fdhalpha-like oxidoreductase alpha (molybdopterin) subunit

Probab=95.19  E-value=0.43  Score=48.53  Aligned_cols=117  Identities=16%  Similarity=0.210  Sum_probs=68.0

Q ss_pred             hHHHHHHHHHHcC-CCeEEEEeccchHHHHHHHHHHHHh-cCCeeee-----cCCcc--ccc---------cccCCCCCC
Q 019775           41 PHTLTFTQTLLKC-RGTIFFTGVGKSGFVANKISQTLIS-LGIKSGF-----LNPLD--ALH---------GDIGILSSD  102 (336)
Q Consensus        41 ~~i~~~~~~i~~a-~~~I~i~G~G~s~~~a~~~~~~l~~-~g~~~~~-----~~~~~--~~~---------~~~~~~~~~  102 (336)
                      +.++.+++.+.+. .+.|.+++.|....-+.++..+|.+ +|-+-+.     .....  .+.         .....+..-
T Consensus       120 EAl~~IA~kL~~~~p~~i~~y~sg~~s~e~~~~~~~f~r~lGt~n~~~~s~~C~~~~~~al~~~~G~~~~t~~~~Di~~a  199 (743)
T TIGR01701       120 DAYQEIAAKLNSLDPKQVAFYTSGRTSNEAAYLYQLFARSLGSNNLPDCSNMCHEPSSVALKRSIGIGKGSVNLEDFEHT  199 (743)
T ss_pred             HHHHHHHHHHHhcCCCeEEEEecCCcchHHHHHHHHHHHHhCCCCcCCCcccccchhhHHHHHhcCCCCCCCCHhHHHhC
Confidence            3455555555432 2589889888765555555555543 4543221     11100  000         011223456


Q ss_pred             cEEEEEeCC-CCc-HHHHHHHHHHHHcCCeEEEEeCCCCC-----------------ccccccCEEEEcCCCcc
Q 019775          103 DILVMFSKS-GNT-EELLKVVPCAKAKGAYLVSVTSVEGN-----------------ALAAVCDMNVHLPVERE  157 (336)
Q Consensus       103 dlvi~iS~s-G~~-~~~~~~~~~ak~~g~~vi~IT~~~~s-----------------~l~~~ad~~i~~~~~~~  157 (336)
                      |++|++... +.+ +.+...++.|+++|+++|+|-.....                 .-++.||..+.+..+.+
T Consensus       200 d~Il~~G~Np~~~~p~~~~~l~~a~~rGakiIvIdP~~~~~l~rf~~p~~~~~~~t~~~a~~Ad~~l~irPGtD  273 (743)
T TIGR01701       200 DCLVFIGSNAGTNHPRMLKYLYAAKKRGAKIIAINPLRERGLERFWIPQIPESMLTGGGTQISSEYYQVRIGGD  273 (743)
T ss_pred             CEEEEEecCcccccHHHHHHHHHHHHCCCEEEEECCCCcccccccccccccchhccccchHhhCeeecCCCCcH
Confidence            888888554 433 45677788999999999999764322                 11577899988876665

This model represents a well-defined clade of oxidoreductase alpha subunits most closely related to a group of formate dehydrogenases including the E. coli FdhH protein (TIGR01591). These alpha subunits contain a molybdopterin cofactor and generally associate with two other subunits which contain iron-sulfur clusters and cytochromes. The particular subunits with which this enzyme interacts and the substrate which is reduced is unknown at this time. In Ralstonia, the gene is associated with the cbb operon, but is not essential for CO2 fixation.

>KOG1268 consensus Glucosamine 6-phosphate synthetases, contain amidotransferase and phosphosugar isomerase domains [Cell wall/membrane/envelope biogenesis]

Probab=95.15  E-value=1  Score=42.60  Aligned_cols=142  Identities=8%  Similarity=0.105  Sum_probs=99.4

Q ss_pred             hHHHHHHHHHHcCCCeEEEEeccchHHHHHHHHHHHHhc-CCeeeecCCccccccccCCCCCCcEEEE-EeCCCCcHHHH
Q 019775           41 PHTLTFTQTLLKCRGTIFFTGVGKSGFVANKISQTLISL-GIKSGFLNPLDALHGDIGILSSDDILVM-FSKSGNTEELL  118 (336)
Q Consensus        41 ~~i~~~~~~i~~a~~~I~i~G~G~s~~~a~~~~~~l~~~-g~~~~~~~~~~~~~~~~~~~~~~dlvi~-iS~sG~~~~~~  118 (336)
                      +.+.++++.+.+. +...++|.|..+..|.+-+.+...+ -..+.-+-.++.-+..++..+++--+|. .......+...
T Consensus       514 ~~i~~la~~l~~~-~slLi~GRGy~~at~lEGAlKiKEisymHsEgilagElkHgplAlvd~~~pi~~i~~~D~~~~K~~  592 (670)
T KOG1268|consen  514 PKIKDLAKELKDH-KSLLIMGRGYNFATALEGALKIKEISYMHSEGILAGELKHGPLALVDENLPIIMIATRDAVYPKCQ  592 (670)
T ss_pred             HHHHHHHHHHhcc-ceEEEecccccHHHHhhhhhhhheeeehhhchhhhcccccCceeEecCCCCEEEEEecCcccHHHH
Confidence            6788899988888 5999999999999999999888876 2333333345555566666666654444 46667779999


Q ss_pred             HHHHHHHHcCCeEEEEeCCCCCccccccCEEEEcCCCcccCCCCCCChhHHHHHHHHHHHHHHHHHhhcCCCh
Q 019775          119 KVVPCAKAKGAYLVSVTSVEGNALAAVCDMNVHLPVERELCPFDLAPVTSTAIQMVFGDTVAIAMMGARNLTR  191 (336)
Q Consensus       119 ~~~~~ak~~g~~vi~IT~~~~s~l~~~ad~~i~~~~~~~~~~~~~~~~~s~~~~~~l~d~l~~~~~~~~~~~~  191 (336)
                      .++++...|+..-|.|++.....-.......|.+|....  ..  +.+.+    ..=+.+|.+.++..++.+.
T Consensus       593 na~qQv~aRkG~pIiic~~~~~~~~~~~~~~~~vP~tvD--Cl--Qgil~----viPlQLlsyhlav~rg~~v  657 (670)
T KOG1268|consen  593 NAIQQVTARKGRPIIICDKGDKEEQKAGNKTLEVPQTVD--CL--QGILN----VIPLQLLSYHLAVLRGINV  657 (670)
T ss_pred             HHHHHHHhcCCCeEEEecCCCchhhcccceEEeCCchhh--hh--hhhhh----hhhHHHHHHHHHHHcCCCC
Confidence            999999999888888888877765566667788877644  22  22222    2334555666666666543

>COG0052 RpsB Ribosomal protein S2 [Translation, ribosomal structure and biogenesis]

Probab=95.11  E-value=0.45  Score=40.68  Aligned_cols=69  Identities=14%  Similarity=0.097  Sum_probs=49.4

Q ss_pred             CcEEEEEeCCCCcHHHHHHHHHHHHcCCeEEEEeCCCCCccccccCEEEEcCCCcccCCCCCCChhHHHHHHHHHHHHHH
Q 019775          102 DDILVMFSKSGNTEELLKVVPCAKAKGAYLVSVTSVEGNALAAVCDMNVHLPVERELCPFDLAPVTSTAIQMVFGDTVAI  181 (336)
Q Consensus       102 ~dlvi~iS~sG~~~~~~~~~~~ak~~g~~vi~IT~~~~s~l~~~ad~~i~~~~~~~~~~~~~~~~~s~~~~~~l~d~l~~  181 (336)
                      .|++|++.-..+    ..+++.|++.|++||++.+....|  ...|+.|....  .          +.-+.-+++.+|..
T Consensus       157 Pd~l~ViDp~~e----~iAv~EA~klgIPVvAlvDTn~dp--d~VD~~IP~Nd--d----------a~rsi~Li~~~lA~  218 (252)
T COG0052         157 PDVLFVIDPRKE----KIAVKEANKLGIPVVALVDTNCDP--DGVDYVIPGND--D----------AIRSIALIYWLLAR  218 (252)
T ss_pred             CCEEEEeCCcHh----HHHHHHHHHcCCCEEEEecCCCCC--ccCceeecCCC--h----------HHHHHHHHHHHHHH
Confidence            688888765443    456788999999999999976665  67788865533  3          44555677777777


Q ss_pred             HHHhhcC
Q 019775          182 AMMGARN  188 (336)
Q Consensus       182 ~~~~~~~  188 (336)
                      .+.+.++
T Consensus       219 ai~e~r~  225 (252)
T COG0052         219 AILEGRG  225 (252)
T ss_pred             HHHHHhc
Confidence            7777654

>CHL00067 rps2 ribosomal protein S2

Probab=95.09  E-value=0.99  Score=38.77  Aligned_cols=68  Identities=10%  Similarity=0.176  Sum_probs=48.7

Q ss_pred             CCCcEEEEEeCCCCcHHHHHHHHHHHHcCCeEEEEeCCCCCccccccCEEEEcCCCcccCCCCCCChhHHHHHHHHHHHH
Q 019775          100 SSDDILVMFSKSGNTEELLKVVPCAKAKGAYLVSVTSVEGNALAAVCDMNVHLPVERELCPFDLAPVTSTAIQMVFGDTV  179 (336)
Q Consensus       100 ~~~dlvi~iS~sG~~~~~~~~~~~ak~~g~~vi~IT~~~~s~l~~~ad~~i~~~~~~~~~~~~~~~~~s~~~~~~l~d~l  179 (336)
                      ...|++|++....+.    .++++|...|+++|+|++...+|  ...|+.|.+...            |.-+..+++..|
T Consensus       160 ~~P~~iiv~d~~~~~----~ai~Ea~~l~IPvIaivDTn~~p--~~idypIP~Ndd------------s~~si~li~~~l  221 (230)
T CHL00067        160 KLPDIVIIIDQQEEY----TALRECRKLGIPTISILDTNCDP--DLADIPIPANDD------------AIASIKLILNKL  221 (230)
T ss_pred             cCCCEEEEeCCcccH----HHHHHHHHcCCCEEEEEeCCCCc--cccceeeecCCc------------hHHHHHHHHHHH
Confidence            457888888877654    67889999999999999976655  346777665443            445556777777


Q ss_pred             HHHHHh
Q 019775          180 AIAMMG  185 (336)
Q Consensus       180 ~~~~~~  185 (336)
                      ..++..
T Consensus       222 ~~ai~~  227 (230)
T CHL00067        222 TTAICE  227 (230)
T ss_pred             HHHHHH
Confidence            666554

>COG1253 TlyC Hemolysins and related proteins containing CBS domains [General function prediction only]

Probab=94.95  E-value=0.11  Score=49.25  Aligned_cols=84  Identities=13%  Similarity=0.001  Sum_probs=63.6

Q ss_pred             CccccCCCcHHHHHHHHHhcCcceEEEEcCCCcEEEEeeHHHHHHHHHhcCCchhh----hhHhhhcCCCCeeeCCCccH
Q 019775          221 LPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRRTLKASGEGIFK----LTVGEMCNRSPRTIGPDAMA  296 (336)
Q Consensus       221 ~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~it~~dl~~~~~~~~~~~~~----~~i~~~~~~~~~~v~~~~~l  296 (336)
                      .+.+++..++.++++.|++.+.....|+|+-|...|+||.+|++..+...-.+..+    ..+....... +.+....++
T Consensus       281 ~~~Vpet~~~~~lL~~~r~~~~hmAiVvDEyG~~~GlVTleDIiEeIvGei~de~d~~~~~~~~~~~~~~-~~v~G~~~l  359 (429)
T COG1253         281 PLFVPETLSLSDLLEEFREERTHMAIVVDEYGGVEGLVTLEDIIEEIVGEIPDEHDEDEEEDIIQRDDDG-WLVDGRVPL  359 (429)
T ss_pred             CeEecCCCcHHHHHHHHHHhCCeEEEEEEcCCCeEEEeEHHHHHHHHhCCCcCcccccccccceEecCCc-EEEeccccH
Confidence            45899999999999999999999999999999999999999999988753221111    1222222334 668888888


Q ss_pred             HHHHHHhcC
Q 019775          297 VEAMQKMES  305 (336)
Q Consensus       297 ~~~~~~~~~  305 (336)
                      ++..+.+.-
T Consensus       360 ~e~~~~l~~  368 (429)
T COG1253         360 EELEELLGI  368 (429)
T ss_pred             HHHHHHhCC
Confidence            888777654

>PRK09939 putative oxidoreductase; Provisional

Probab=94.64  E-value=0.5  Score=47.99  Aligned_cols=116  Identities=10%  Similarity=0.123  Sum_probs=69.4

Q ss_pred             hHHHHHHHHHH---cCCCeEEEEeccchHHHHHHHHHHHHh-cCCeeee-----cCCc--ccc---------ccccCCCC
Q 019775           41 PHTLTFTQTLL---KCRGTIFFTGVGKSGFVANKISQTLIS-LGIKSGF-----LNPL--DAL---------HGDIGILS  100 (336)
Q Consensus        41 ~~i~~~~~~i~---~a~~~I~i~G~G~s~~~a~~~~~~l~~-~g~~~~~-----~~~~--~~~---------~~~~~~~~  100 (336)
                      +.++.+++.+.   .. +.+.+|+.|.+..-+.++..+|.+ +|-+.+.     +...  ..+         ...+..+.
T Consensus       129 EAl~~Ia~~L~~i~~p-~~i~~y~sg~~snE~~yl~q~f~r~~Gtnn~~~~s~~C~~~~~~~l~~~~G~g~~t~~l~Di~  207 (759)
T PRK09939        129 QAFDEIGARLQSYSDP-NQVEFYTSGRTSNEAAFLYQLFAREYGSNNFPDCSNMCHEPTSVGLAASIGVGKGTVLLEDFE  207 (759)
T ss_pred             HHHHHHHHHHHhhcCC-CeEEEEeeCCchHHHHHHHHHHHHHhCCcccCCCCCCCchHHHHHHHHhcCCCCCCCCHHHHh
Confidence            34445555443   34 689999998877766666666654 3443221     1110  000         00111245


Q ss_pred             CCcEEEEEeC-CCCc-HHHHHHHHHHHHcCCeEEEEeCCCCC-----------------ccccccCEEEEcCCCcc
Q 019775          101 SDDILVMFSK-SGNT-EELLKVVPCAKAKGAYLVSVTSVEGN-----------------ALAAVCDMNVHLPVERE  157 (336)
Q Consensus       101 ~~dlvi~iS~-sG~~-~~~~~~~~~ak~~g~~vi~IT~~~~s-----------------~l~~~ad~~i~~~~~~~  157 (336)
                      .-|++|++.. .+.+ +.+...++.++++|+++|+|-....-                 .-++.||..+.+..+.+
T Consensus       208 ~ad~Ili~G~Np~~~hP~~~~~l~~a~~rGakiIvIDPr~~~gl~rft~p~~~~~~~~~~ta~~Ad~~l~irPGtD  283 (759)
T PRK09939        208 KCDLVICIGHNPGTNHPRMLTSLRALVKRGAKMIAINPLQERGLERFTAPQNPFEMLTNSETQLASAYYNVRIGGD  283 (759)
T ss_pred             hCCEEEEeCCChHHHHHHHHHHHHHHHHCCCEEEEECCCCcccccccccccccchhccccchhhhCeeeCCCCChH
Confidence            6788888854 4443 44666678899999999999764321                 13678999988876655

>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]

Probab=94.49  E-value=0.13  Score=46.97  Aligned_cols=58  Identities=22%  Similarity=0.239  Sum_probs=51.6

Q ss_pred             hhhhhhccccCCCCccccCCCcHHHHHHHHHhcCcceEEEEcCCCcEEEEeeHHHHHHHH
Q 019775          208 IFKVQDVMKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRRTL  267 (336)
Q Consensus       208 ~~~v~~im~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~it~~dl~~~~  267 (336)
                      ...+.++|.+.+  ++.+.+.++.++-+++.+++-..+||+|++|+++.++++.||.+..
T Consensus       170 ~~~~~~vmt~~~--~~~~~gi~l~~~neiL~~~kkGkl~iv~~~gelva~~~rtDl~k~~  227 (503)
T KOG2550|consen  170 SLLVSDVMTKNP--VTGAQGITLKEANEILKKIKKGKLPVVDDKGELVAMLSRTDLMKNR  227 (503)
T ss_pred             cchhhhhccccc--ccccccccHHHHHHHHHhhhcCCcceeccCCceeeeeehhhhhhhc
Confidence            346788999985  4788899999999999999999999999999999999999998754

>KOG0474 consensus Cl- channel CLC-7 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]

Probab=94.24  E-value=0.14  Score=49.20  Aligned_cols=55  Identities=22%  Similarity=0.323  Sum_probs=48.3

Q ss_pred             hhhccccCCCCccccCCCcHHHHHHHHHhcCcceEEEEcCCCcEEEEeeHHHHHHHH
Q 019775          211 VQDVMKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRRTL  267 (336)
Q Consensus       211 v~~im~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~it~~dl~~~~  267 (336)
                      ...+|.|.+.  +++.++++..+..+++..+.+++.|+++.++.+|++|++|+...-
T Consensus       692 l~p~~n~sPy--tV~~~mSl~k~~~lFR~lGLRhLlVv~~~~~~~gilTR~D~~~~~  746 (762)
T KOG0474|consen  692 LHPFMNPSPY--TVPETMSLAKAFILFRQLGLRHLLVVPKTNRVVGILTRKDLARYR  746 (762)
T ss_pred             cccccCCCCc--ccCcccchHHHHHHHHHhcceeEEEecCCCceeEEEehhhhhhHH
Confidence            3556777754  899999999999999999999999999888999999999998644

>PF00318 Ribosomal_S2: Ribosomal protein S2; InterPro: IPR001865 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=93.84  E-value=2.2  Score=36.16  Aligned_cols=66  Identities=12%  Similarity=0.179  Sum_probs=45.0

Q ss_pred             CcEEEEEeCCCCcHHHHHHHHHHHHcCCeEEEEeCCCCCccccccCEEEEcCCCcccCCCCCCChhHHHHHHHHHHHHHH
Q 019775          102 DDILVMFSKSGNTEELLKVVPCAKAKGAYLVSVTSVEGNALAAVCDMNVHLPVERELCPFDLAPVTSTAIQMVFGDTVAI  181 (336)
Q Consensus       102 ~dlvi~iS~sG~~~~~~~~~~~ak~~g~~vi~IT~~~~s~l~~~ad~~i~~~~~~~~~~~~~~~~~s~~~~~~l~d~l~~  181 (336)
                      .|++|++....+    ..++++|+..|+++|++++....|  ...|+.|.....            |..+..+++..|..
T Consensus       144 P~~vii~~~~~~----~~~i~Ea~~l~IP~i~i~Dtn~~~--~~i~ypIp~N~~------------s~~si~~i~~~l~~  205 (211)
T PF00318_consen  144 PDLVIILDPNKN----KNAIREANKLNIPTIAIVDTNCNP--SLIDYPIPANDD------------SIKSIYLILNLLAK  205 (211)
T ss_dssp             BSEEEESSTTTT----HHHHHHHHHTTS-EEEEESTTS-G--TTSSEEEES-SS------------SHHHHHHHHHHHHH
T ss_pred             CcEEEEeccccc----chhHHHHHhcCceEEEeecCCCCc--cccceEeecCCc------------cHHHHHHHHHHHHH
Confidence            788887776544    567889999999999999875554  457888776443            44555677777766


Q ss_pred             HHHh
Q 019775          182 AMMG  185 (336)
Q Consensus       182 ~~~~  185 (336)
                      .+.+
T Consensus       206 ai~~  209 (211)
T PF00318_consen  206 AILE  209 (211)
T ss_dssp             HHHH
T ss_pred             HHHh
Confidence            6554

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal S2 proteins have been shown to belong to a family that includes 40S ribosomal subunit 40kDa proteins, putative laminin-binding proteins, NAB-1 protein and 29.3kDa protein from Haloarcula marismortui [, ]. The laminin-receptor proteins are thus predicted to be the eukaryotic homologue of the eubacterial S2 risosomal proteins [].; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 2QNH_c 3MR8_B 3PYS_B 3MS0_B 3PYN_B 1VOZ_B 2OW8_c 3PYQ_B 3D5C_B 3PYU_B ....

>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=93.42  E-value=0.39  Score=41.54  Aligned_cols=124  Identities=19%  Similarity=0.245  Sum_probs=70.5

Q ss_pred             HHHHHcCCeEEEEeCCCCCccccccCEEEEcCCCcccCCCCCCChhHHHHHHHHHHHHHHHHHhhcCCChHHHhhc---C
Q 019775          122 PCAKAKGAYLVSVTSVEGNALAAVCDMNVHLPVERELCPFDLAPVTSTAIQMVFGDTVAIAMMGARNLTRDEYAAN---H  198 (336)
Q Consensus       122 ~~ak~~g~~vi~IT~~~~s~l~~~ad~~i~~~~~~~~~~~~~~~~~s~~~~~~l~d~l~~~~~~~~~~~~~~~~~~---~  198 (336)
                      +.=++.|.++|.+|.. -....+++|-...+..+.-. .+. .+-      .+         ...   -+.+|++.   .
T Consensus       180 ~lq~~l~kTivfVTHD-idEA~kLadri~vm~~G~i~-Q~~-~P~------~i---------l~~---Pan~FV~~f~g~  238 (309)
T COG1125         180 ELQKELGKTIVFVTHD-IDEALKLADRIAVMDAGEIV-QYD-TPD------EI---------LAN---PANDFVEDFFGE  238 (309)
T ss_pred             HHHHHhCCEEEEEecC-HHHHHhhhceEEEecCCeEE-EeC-CHH------HH---------HhC---ccHHHHHHHhcc
Confidence            4445568889999975 44555889988877665421 110 000      00         000   01222211   1


Q ss_pred             CCCchhhhhhhhhhhccccCCC--CccccCCCcHHHHHHHHHhcCcceEEEEcCCCcEEEEeeHHHHHHH
Q 019775          199 PAGRIGKSLIFKVQDVMKPQKE--LPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRRT  266 (336)
Q Consensus       199 ~~~~~~~~~~~~v~~im~~~~~--~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~it~~dl~~~  266 (336)
                      ...........++.+.|.+...  --.+.....-.+++..+...+.+.+||+|++|+++|.+|..+|...
T Consensus       239 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~~~~~~~~~Vvd~~g~~~G~vt~~~l~~~  308 (309)
T COG1125         239 SERGLRLLSLVSVADAVRRGEPADGEPLLEGFVDRDALSDFLARGRSVLPVVDEDGRPLGTVTRADLLDE  308 (309)
T ss_pred             ccccccccchhhHHHhhcccccccCCccccchhhHHHHHHHHhcCCceeEEECCCCcEeeEEEHHHHhhh
Confidence            1111122234455666665321  0023344455667777888888999999999999999999998753

>COG4536 CorB Putative Mg2+ and Co2+ transporter CorB [Inorganic ion transport and metabolism]

Probab=93.42  E-value=0.42  Score=43.35  Aligned_cols=92  Identities=20%  Similarity=0.189  Sum_probs=60.9

Q ss_pred             hhccccCCCCccccCCCcHHHHHHHHHhcCcceEEEEcCCCcEEEEeeHHHHHHHHHhcCCchhhhhHhhhcCC--CCee
Q 019775          212 QDVMKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRRTLKASGEGIFKLTVGEMCNR--SPRT  289 (336)
Q Consensus       212 ~~im~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~it~~dl~~~~~~~~~~~~~~~i~~~~~~--~~~~  289 (336)
                      .++++-..+...++.+.++.+.+..|.+++-..-.|+|+=|.+.|+||.+|++..+...-.+.......++...  .-..
T Consensus       268 ~d~~~~a~epyFVPe~Tpl~~QL~~F~~~k~hialVVDEYG~i~GLVTLEDIlEEIVGdftde~d~~~~ev~~q~dgs~i  347 (423)
T COG4536         268 EDILRAADEPYFVPEGTPLSDQLVAFQRNKKHIALVVDEYGDIQGLVTLEDILEEIVGDFTDEHDTLAKEVIPQSDGSFI  347 (423)
T ss_pred             hHHHHHhcCCeecCCCCcHHHHHHHHHHhcceEEEEEeccCcEEeeeeHHHHHHHHhccccccCcccchhhcccCCCcEE
Confidence            34444333344689999999999999999888889999989999999999999987642211111222222211  1244


Q ss_pred             eCCCccHHHHHHHh
Q 019775          290 IGPDAMAVEAMQKM  303 (336)
Q Consensus       290 v~~~~~l~~~~~~~  303 (336)
                      +..+.++.|+-+.|
T Consensus       348 idGs~~iRdlNr~l  361 (423)
T COG4536         348 IDGSANVRDLNRAL  361 (423)
T ss_pred             EeCCCcHHHHHHhc
Confidence            66666666665444

>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=93.19  E-value=0.66  Score=40.19  Aligned_cols=89  Identities=16%  Similarity=0.209  Sum_probs=55.9

Q ss_pred             ceEEEEcCCCcEEEEeeHHHHHHHH--------HhcCCc----hhhhhHhhhcCCCC----eeeCCCccHHHHHHHhcCC
Q 019775          243 GCLLVIDEEYHLIGTFTDGDLRRTL--------KASGEG----IFKLTVGEMCNRSP----RTIGPDAMAVEAMQKMESP  306 (336)
Q Consensus       243 ~~ipVvd~~~~~~G~it~~dl~~~~--------~~~~~~----~~~~~i~~~~~~~~----~~v~~~~~l~~~~~~~~~~  306 (336)
                      +.+.|.+ +|+++-+-+...++..-        ......    .....+.+.+.+..    ..+.......+++..+...
T Consensus       204 dri~vm~-~G~i~Q~~~P~~il~~Pan~FV~~f~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~~~  282 (309)
T COG1125         204 DRIAVMD-AGEIVQYDTPDEILANPANDFVEDFFGESERGLRLLSLVSVADAVRRGEPADGEPLLEGFVDRDALSDFLAR  282 (309)
T ss_pred             ceEEEec-CCeEEEeCCHHHHHhCccHHHHHHHhccccccccccchhhHHHhhcccccccCCccccchhhHHHHHHHHhc
Confidence            3466666 68899999977776522        111111    11234444443322    1233344555566666666


Q ss_pred             CCCccEeEEEeCCCcEEEEEehhhHhhc
Q 019775          307 PSPVQFLPVINRQNILIGIVTLHGLVSA  334 (336)
Q Consensus       307 ~~~~~~l~Vv~~~~~~iGiit~~di~~~  334 (336)
                        +...+||+|++|+++|.||+.+++..
T Consensus       283 --~~~~~~Vvd~~g~~~G~vt~~~l~~~  308 (309)
T COG1125         283 --GRSVLPVVDEDGRPLGTVTRADLLDE  308 (309)
T ss_pred             --CCceeEEECCCCcEeeEEEHHHHhhh
Confidence              78899999999999999999999863

>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=92.66  E-value=0.88  Score=33.23  Aligned_cols=83  Identities=16%  Similarity=0.145  Sum_probs=57.7

Q ss_pred             eEEEEeccchHHHHHHHHHHHHhcCCeeeec--CCcccccc--ccCCCCCCcEEEEEeCCCCcHHHHHHHHHHHHcCCeE
Q 019775           56 TIFFTGVGKSGFVANKISQTLISLGIKSGFL--NPLDALHG--DIGILSSDDILVMFSKSGNTEELLKVVPCAKAKGAYL  131 (336)
Q Consensus        56 ~I~i~G~G~s~~~a~~~~~~l~~~g~~~~~~--~~~~~~~~--~~~~~~~~dlvi~iS~sG~~~~~~~~~~~ak~~g~~v  131 (336)
                      +|.++|.-. .. -..+...+.+.|......  .+...-..  ....+.+-|++|+++..=.+..+..+-+.||+.|.++
T Consensus         1 ~vliVGG~~-~~-~~~~~~~~~~~G~~~~~hg~~~~~~~~~~~l~~~i~~aD~VIv~t~~vsH~~~~~vk~~akk~~ip~   78 (97)
T PF10087_consen    1 SVLIVGGRE-DR-ERRYKRILEKYGGKLIHHGRDGGDEKKASRLPSKIKKADLVIVFTDYVSHNAMWKVKKAAKKYGIPI   78 (97)
T ss_pred             CEEEEcCCc-cc-HHHHHHHHHHcCCEEEEEecCCCCccchhHHHHhcCCCCEEEEEeCCcChHHHHHHHHHHHHcCCcE
Confidence            366777411 11 233466777788888877  22222221  3446778899999999999999999999999999999


Q ss_pred             EEEeCCCCC
Q 019775          132 VSVTSVEGN  140 (336)
Q Consensus       132 i~IT~~~~s  140 (336)
                      +..-+..-+
T Consensus        79 ~~~~~~~~~   87 (97)
T PF10087_consen   79 IYSRSRGVS   87 (97)
T ss_pred             EEECCCCHH
Confidence            987644333

>PRK00945 acetyl-CoA decarbonylase/synthase complex subunit epsilon; Provisional

Probab=92.23  E-value=1.4  Score=35.88  Aligned_cols=102  Identities=8%  Similarity=0.022  Sum_probs=62.4

Q ss_pred             HHHHHHHHcCCCeEEEEeccchH--HHHHHHHHHHHhcCCeeeecCC------ccccccccCC---------------C-
Q 019775           44 LTFTQTLLKCRGTIFFTGVGKSG--FVANKISQTLISLGIKSGFLNP------LDALHGDIGI---------------L-   99 (336)
Q Consensus        44 ~~~~~~i~~a~~~I~i~G~G~s~--~~a~~~~~~l~~~g~~~~~~~~------~~~~~~~~~~---------------~-   99 (336)
                      +.++++|.+|++-++++|.|...  ...+.+.....+.+.++..-..      .........+               + 
T Consensus        25 ~~aa~lI~~AKrPlIivG~ga~~~~ea~e~l~elaEkl~iPVvtT~~~~~~~~~kgv~~~~~~lg~lg~~~~~p~~e~~~  104 (171)
T PRK00945         25 KIAAMMIKKAKRPLLVVGSLLLDDEELLDRAVKIAKKANIPVAATGGSYKGLIDKGVDAKYINLHELTNYLKDPNWKGLD  104 (171)
T ss_pred             HHHHHHHHhCCCcEEEECcCccccchHHHHHHHHHHHHCCCEEEccccccccccCCccCCcccHHHHHhhccCchhhhhc
Confidence            56778888887788888988765  3444455555556887765443      1111100001               2 


Q ss_pred             --CCCcEEEEEe-CCCCcHHHHHHHHHHHHcCCeEEEEeCCCCCccccccCEEEE
Q 019775          100 --SSDDILVMFS-KSGNTEELLKVVPCAKAKGAYLVSVTSVEGNALAAVCDMNVH  151 (336)
Q Consensus       100 --~~~dlvi~iS-~sG~~~~~~~~~~~ak~~g~~vi~IT~~~~s~l~~~ad~~i~  151 (336)
                        ..-|++|++- .-.....+++.+|....  .++|+|+..-    .+.||+.+.
T Consensus       105 g~~~~DlvlfvG~~~~~~~~~l~~lk~f~~--~~~~~~~~~y----~~~a~~s~~  153 (171)
T PRK00945        105 GNGNYDLVIFIGVTYYYASQGLSALKHFSP--LKTITIDRYY----HPNADMSFP  153 (171)
T ss_pred             CCCCcCEEEEecCCchhHHHHHHHHhhcCC--ceEEEecCCc----CCCCceecC
Confidence              4668877774 34455667777776654  8899998542    556777763

>KOG2118 consensus Predicted membrane protein, contains two CBS domains [Function unknown]

Probab=92.21  E-value=0.28  Score=47.13  Aligned_cols=120  Identities=18%  Similarity=0.201  Sum_probs=83.1

Q ss_pred             hhhhhhccccCCCCccccCCCcHH-HHHHHHHhcCcceEEEEcCCC-cEEEEeeHHHHHHHHHhcCCchhhhhHhhhcCC
Q 019775          208 IFKVQDVMKPQKELPVCKEGDLIM-DQLVELTSKGCGCLLVIDEEY-HLIGTFTDGDLRRTLKASGEGIFKLTVGEMCNR  285 (336)
Q Consensus       208 ~~~v~~im~~~~~~~~~~~~~~v~-~~~~~~~~~~~~~ipVvd~~~-~~~G~it~~dl~~~~~~~~~~~~~~~i~~~~~~  285 (336)
                      ...++++|.|-..+..+..+..+. +.+....+++++.+||.+.+. ..+|.+-...+........ .....++..++..
T Consensus       203 ek~~~evmtpi~~~f~l~~n~~l~~~~~~~i~~~g~sripv~~~~~~~~i~~~L~~~~~~~~~~~~-~~~~~~v~~~~~~  281 (498)
T KOG2118|consen  203 EKLVGEVMTPIEDVFALDANTKLDRETVGEIVKHGYSRIPVYEQEPKNKIGGLLVMNLLRLLQVEV-PLEPLPVSESALL  281 (498)
T ss_pred             HHHHHHhccchhhheeeccccccchHHHhhHhhcCcceeeeccCcccchhhHHHHhhhhhhhcccc-ccccccchhhhcc
Confidence            567899999976655666666665 777788899999999998542 2344433333333332211 1224567777777


Q ss_pred             CCeeeCCCccHHHHHHHhcCCCCCccEeEEEeCCCcEEEEEehhhH
Q 019775          286 SPRTIGPDAMAVEAMQKMESPPSPVQFLPVINRQNILIGIVTLHGL  331 (336)
Q Consensus       286 ~~~~v~~~~~l~~~~~~~~~~~~~~~~l~Vv~~~~~~iGiit~~di  331 (336)
                      ....+++++++.+.++.|++.  +. ++.|+.+...-+|+++..|+
T Consensus       282 ~l~~vp~~~~~~~~l~~~~~~--~~-H~~~v~~~~~~~~~~~l~~~  324 (498)
T KOG2118|consen  282 RLPLVPENMPLLDLLNEFQKG--KS-HMAVVRNGHVDIFVLTLEDL  324 (498)
T ss_pred             ccccCCCcccHHHHHHHHhhh--hc-eeEEEecCCcceeeEeccch
Confidence            778899999999999999987  44 55555454668899998886

>TIGR01553 formate-DH-alph formate dehydrogenase, alpha subunit, proteobacterial-type

Probab=92.14  E-value=2.1  Score=45.02  Aligned_cols=85  Identities=18%  Similarity=0.266  Sum_probs=56.5

Q ss_pred             CCCCcEEEEEeCC-CCc-HHHHHHHHHHHHcCCeEEEEeCCCCCccccccCEEEEcCCCcccCCCCCCChhHHHHHHHHH
Q 019775           99 LSSDDILVMFSKS-GNT-EELLKVVPCAKAKGAYLVSVTSVEGNALAAVCDMNVHLPVERELCPFDLAPVTSTAIQMVFG  176 (336)
Q Consensus        99 ~~~~dlvi~iS~s-G~~-~~~~~~~~~ak~~g~~vi~IT~~~~s~l~~~ad~~i~~~~~~~~~~~~~~~~~s~~~~~~l~  176 (336)
                      +..-|++|++... ..+ +....-+..+|++|+++|+|-. ..+..+..||..+.+..+++               ..++
T Consensus       219 i~~Ad~Ilv~G~Np~es~p~~~~~i~~Ak~~GakiIvIDP-R~t~tA~~AD~~l~irPGTD---------------~AL~  282 (1009)
T TIGR01553       219 IKNSDLILVMGGNPAENHPIGFKWAIRAKKKGAKIIHIDP-RFNRTATVADLYAPIRSGSD---------------IAFL  282 (1009)
T ss_pred             HHhCCEEEEECCChhhhChHHHHHHHHHHHcCCEEEEEcC-CCCchhHhhccEeCCCCChH---------------HHHH
Confidence            4556888888544 333 3345566788999999999965 56788899999998877766               4555


Q ss_pred             HHHHHHHHhhcCCChHHHhhcCCC
Q 019775          177 DTVAIAMMGARNLTRDEYAANHPA  200 (336)
Q Consensus       177 d~l~~~~~~~~~~~~~~~~~~~~~  200 (336)
                      ..|+..++++... .++|.+.+.+
T Consensus       283 ~am~~~Ii~e~l~-D~~Fv~~~T~  305 (1009)
T TIGR01553       283 NGMIKYILEKELY-QKEYVVNYTN  305 (1009)
T ss_pred             HHHHHHHHHCCCc-cHHHHHHHcC
Confidence            5555555555432 3345444433

This model is well-defined, with a large, unpopulated trusted/noise gap.

>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein

Probab=91.76  E-value=0.4  Score=44.57  Aligned_cols=46  Identities=20%  Similarity=0.367  Sum_probs=40.2

Q ss_pred             CccccCCCcHHHHHHHHHhcCcceEEEEcCCCcEEEEeeHHHHHHHHH
Q 019775          221 LPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRRTLK  268 (336)
Q Consensus       221 ~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~it~~dl~~~~~  268 (336)
                      ++++++++++.+++..+.+.++. ++|+|+ |+++|+|+..+++..+.
T Consensus       335 ~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~-~~~~g~~~~~~~~~~~~  380 (382)
T TIGR03415       335 PTVINPDTLMRDVLAARHRTGGA-ILLVEN-GRIVGVIGDDNIYHALL  380 (382)
T ss_pred             CcccCCCCcHHHHHHHHhcCCCC-eEEeeC-CeEEEEEeHHHHHHHHh
Confidence            45899999999999999887754 888885 99999999999998764

Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.

>TIGR01591 Fdh-alpha formate dehydrogenase, alpha subunit, archaeal-type

Probab=90.59  E-value=3.6  Score=41.41  Aligned_cols=58  Identities=16%  Similarity=0.324  Sum_probs=41.7

Q ss_pred             CCCCcEEEEEeCCC-C-cHHHHHHHHHHHHcCCeEEEEeCCCCCccccccCEEEEcCCCcc
Q 019775           99 LSSDDILVMFSKSG-N-TEELLKVVPCAKAKGAYLVSVTSVEGNALAAVCDMNVHLPVERE  157 (336)
Q Consensus        99 ~~~~dlvi~iS~sG-~-~~~~~~~~~~ak~~g~~vi~IT~~~~s~l~~~ad~~i~~~~~~~  157 (336)
                      +..-|++|++...- . .+.....++.++++|+++|.|-. ..+..+..||..|.+..+.+
T Consensus       153 i~~ad~il~~G~n~~~~~~~~~~~i~~a~~~G~klvvidp-~~s~ta~~ad~~i~i~Pgtd  212 (671)
T TIGR01591       153 IENADLIVIIGYNPAESHPVVAQYLKNAKRNGAKIIVIDP-RKTETAKIADLHIPLKPGTD  212 (671)
T ss_pred             HHhCCEEEEECCChhhccCHHHHHHHHHHHCCCeEEEECC-CCChhhHhhCcccCCCCCcH
Confidence            44568888885432 2 23455667888899999999965 56777888999988877655

This model is well-defined, with only a single fragmentary sequence falling between trusted and noise. The alpha subunit of a version of nitrate reductase is closely related.

>cd02753 MopB_Formate-Dh-H Formate dehydrogenase H (Formate-Dh-H) catalyzes the reversible oxidation of formate to CO2 with the release of a proton and two electrons

Probab=90.49  E-value=5.6  Score=38.59  Aligned_cols=58  Identities=17%  Similarity=0.326  Sum_probs=41.8

Q ss_pred             CCCCcEEEEEeCCCC--cHHHHHHHHHHHHcCCeEEEEeCCCCCccccccCEEEEcCCCcc
Q 019775           99 LSSDDILVMFSKSGN--TEELLKVVPCAKAKGAYLVSVTSVEGNALAAVCDMNVHLPVERE  157 (336)
Q Consensus        99 ~~~~dlvi~iS~sG~--~~~~~~~~~~ak~~g~~vi~IT~~~~s~l~~~ad~~i~~~~~~~  157 (336)
                      +..-|++|++...-.  .+....-+..++++|+++|.|-.. .++.+..||..|.+.-+.+
T Consensus       154 ~~~ad~il~~G~n~~~~~~~~~~~i~~a~~~G~k~i~Idp~-~s~ta~~Ad~~l~i~PGtD  213 (512)
T cd02753         154 IEEADVILVIGSNTTEAHPVIARRIKRAKRNGAKLIVADPR-RTELARFADLHLQLRPGTD  213 (512)
T ss_pred             HHhCCEEEEECCChhhhhHHHHHHHHHHHHCCCeEEEEcCC-CccchHhhCeeeCCCCCcH
Confidence            456688888865432  233445567788999999999975 5666788999988866655

It is a component of the anaerobic formate hydrogen lyase complex. The E. coli formate dehydrogenase H (Fdh-H) is a monomer composed of a single polypeptide chain with a Mo active site region and a [4Fe-4S] center. Members of the MopB_Formate-Dh-H CD belong to the molybdopterin_binding (MopB) superfamily of proteins.

>cd02759 MopB_Acetylene-hydratase The MopB_Acetylene-hydratase CD contains acetylene hydratase (Ahy) and other related proteins

Probab=90.37  E-value=6.7  Score=37.69  Aligned_cols=59  Identities=19%  Similarity=0.142  Sum_probs=42.7

Q ss_pred             CCCCCcEEEEEeCCCCcH---HHHHHHHHHHHcCCeEEEEeCCCCCccccccCEEEEcCCCcc
Q 019775           98 ILSSDDILVMFSKSGNTE---ELLKVVPCAKAKGAYLVSVTSVEGNALAAVCDMNVHLPVERE  157 (336)
Q Consensus        98 ~~~~~dlvi~iS~sG~~~---~~~~~~~~ak~~g~~vi~IT~~~~s~l~~~ad~~i~~~~~~~  157 (336)
                      .+..-|++|++...-...   .....+..++++|+++|+|-.. .+..+..||..+.+..+.+
T Consensus       157 d~~~ad~Il~~G~n~~~~~~~~~~~~~~~ar~~g~klividpr-~s~ta~~Ad~~l~i~PGtD  218 (477)
T cd02759         157 DWENPECIVLWGKNPLNSNLDLQGHWLVAAMKRGAKLIVVDPR-LTWLAARADLWLPIRPGTD  218 (477)
T ss_pred             hhhcCCEEEEEccChhhhCcHHHHHHHHHHHHCCCEEEEECCC-CChhhHhhCeeeccCCCcH
Confidence            345668888886543322   3445566788899999999764 6777899999998876655

The acetylene hydratase of Pelobacter acetylenicus is a tungsten iron-sulfur protein involved in the fermentation of acetylene to ethanol and acetate. Members of this CD belong to the molybdopterin_binding (MopB) superfamily of proteins.

>PF01936 NYN: NYN domain; InterPro: IPR021139 This highly conserved domain has no known function

Probab=90.22  E-value=1.7  Score=33.94  Aligned_cols=107  Identities=15%  Similarity=0.157  Sum_probs=57.4

Q ss_pred             HHHHHHHHHHcCC--CeEEEEeccchHHHHHHHHHHHHhcCCeeeecCCcc---------cc---ccccCCC--CCCcEE
Q 019775           42 HTLTFTQTLLKCR--GTIFFTGVGKSGFVANKISQTLISLGIKSGFLNPLD---------AL---HGDIGIL--SSDDIL  105 (336)
Q Consensus        42 ~i~~~~~~i~~a~--~~I~i~G~G~s~~~a~~~~~~l~~~g~~~~~~~~~~---------~~---~~~~~~~--~~~dlv  105 (336)
                      +++++.+.+.+.+  .++++||. ........+...|...|+.+...+...         +.   ...+...  .+-|.+
T Consensus        21 ~~~~l~~~i~~~~~~~~~~~y~~-~~~~~~~~~~~~L~~~g~~v~~~~~~~~~~~~k~~~D~~l~~d~~~~~~~~~~d~i   99 (146)
T PF01936_consen   21 DFERLLEEIRKYGPLVRIRAYGN-WDDPNQKSFQEALQRAGIKVRHFPLRKRGGGGKKGVDVALAVDILELAYENPPDTI   99 (146)
T ss_dssp             -HHHHHHHHTTTEEEEEEEEEE-----HHHHHHHHHHHHHT-EEEE------S---S---HHHHHHHHHHHG--GG-SEE
T ss_pred             CHHHHHHHHHhcCCeEEEEEEee-ccccchhhHHHHHHhCeeeEEeeecccccccccCCcHHHHHHHHHHHhhccCCCEE
Confidence            5667777776652  13455554 122334556688888899776654210         00   0111112  334999


Q ss_pred             EEEeCCCCcHHHHHHHHHHHHcCCeEEEEe--CCCCCccccccCEEEEc
Q 019775          106 VMFSKSGNTEELLKVVPCAKAKGAYLVSVT--SVEGNALAAVCDMNVHL  152 (336)
Q Consensus       106 i~iS~sG~~~~~~~~~~~ak~~g~~vi~IT--~~~~s~l~~~ad~~i~~  152 (336)
                      +++|..   .+...+++.++++|.+|++++  +.....|.+.||..+.+
T Consensus       100 vLvSgD---~Df~~~v~~l~~~g~~V~v~~~~~~~s~~L~~~ad~f~~~  145 (146)
T PF01936_consen  100 VLVSGD---SDFAPLVRKLRERGKRVIVVGAEDSASEALRSAADEFISI  145 (146)
T ss_dssp             EEE------GGGHHHHHHHHHH--EEEEEE-GGGS-HHHHHHSSEEEE-
T ss_pred             EEEECc---HHHHHHHHHHHHcCCEEEEEEeCCCCCHHHHHhcCEEEeC
Confidence            999887   457788888899999888887  45666788888887754

However it contains many conserved aspartates, suggesting an enzymatic function such as an endonuclease or glycosyl hydrolase.; PDB: 2QIP_A.

>TIGR00288 conserved hypothetical protein TIGR00288

Probab=90.13  E-value=3.7  Score=32.98  Aligned_cols=82  Identities=16%  Similarity=0.272  Sum_probs=55.3

Q ss_pred             HHHHHHHhcCCeeeecCCcccccc---ccCCC--CCCcEEEEEeCCCCcHHHHHHHHHHHHcCCeEEEEeCCC--CCccc
Q 019775           71 KISQTLISLGIKSGFLNPLDALHG---DIGIL--SSDDILVMFSKSGNTEELLKVVPCAKAKGAYLVSVTSVE--GNALA  143 (336)
Q Consensus        71 ~~~~~l~~~g~~~~~~~~~~~~~~---~~~~~--~~~dlvi~iS~sG~~~~~~~~~~~ak~~g~~vi~IT~~~--~s~l~  143 (336)
                      .|...|...|+..+...+..++..   .+..+  ..=|.++++|..|.   ...+++.+|++|..|+++....  ...+.
T Consensus        70 ~l~~~l~~~Gf~pv~~kG~~Dv~laIDame~~~~~~iD~~vLvSgD~D---F~~Lv~~lre~G~~V~v~g~~~~ts~~L~  146 (160)
T TIGR00288        70 KLIEAVVNQGFEPIIVAGDVDVRMAVEAMELIYNPNIDAVALVTRDAD---FLPVINKAKENGKETIVIGAEPGFSTALQ  146 (160)
T ss_pred             HHHHHHHHCCceEEEecCcccHHHHHHHHHHhccCCCCEEEEEeccHh---HHHHHHHHHHCCCEEEEEeCCCCChHHHH
Confidence            467788888999765443222211   12122  44588999988765   4567778889999999999432  33688


Q ss_pred             cccCEEEEcCCC
Q 019775          144 AVCDMNVHLPVE  155 (336)
Q Consensus       144 ~~ad~~i~~~~~  155 (336)
                      +.||..+.+..+
T Consensus       147 ~acd~FI~L~~~  158 (160)
T TIGR00288       147 NSADIAIILGEE  158 (160)
T ss_pred             HhcCeEEeCCCC
Confidence            899988887654

This family of orthologs is restricted to but universal among the completed archaeal genomes so far. Eubacterial proteins showing at least local homology include slr1870 from Synechocystis PCC6803 and two proteins from Aquifex aeolicusr, none of which is characterized.

>cd02754 MopB_Nitrate-R-NapA-like Nitrate reductases, NapA (Nitrate-R-NapA), NasA, and NarB catalyze the reduction of nitrate to nitrite

Probab=89.91  E-value=6.8  Score=38.52  Aligned_cols=58  Identities=14%  Similarity=0.226  Sum_probs=41.0

Q ss_pred             CCCCcEEEEEeCCCCcH--HHHHHHHHHHHc--CCeEEEEeCCCCCccccccCEEEEcCCCcc
Q 019775           99 LSSDDILVMFSKSGNTE--ELLKVVPCAKAK--GAYLVSVTSVEGNALAAVCDMNVHLPVERE  157 (336)
Q Consensus        99 ~~~~dlvi~iS~sG~~~--~~~~~~~~ak~~--g~~vi~IT~~~~s~l~~~ad~~i~~~~~~~  157 (336)
                      +..-|++|++.......  .....+..++++  |+++|+|-. ..++.+..||..+.+..+++
T Consensus       155 i~~ad~Il~~G~n~~~s~~~~~~~~~~a~~~~~G~klividP-~~t~ta~~Ad~~l~i~PGtD  216 (565)
T cd02754         155 IEHADCFFLIGSNMAECHPILFRRLLDRKKANPGAKIIVVDP-RRTRTADIADLHLPIRPGTD  216 (565)
T ss_pred             HhhCCEEEEECCChhhhhhHHHHHHHHHHhcCCCCEEEEEcC-CCCcchHHhCeeeCCCCCcc
Confidence            45568888886654332  333456677777  999999976 46777888999988876655

Monomeric Nas is located in the cytoplasm and participates in nitrogen assimilation. Dimeric Nap is located in the periplasm and is coupled to quinol oxidation via a membrane-anchored tetraheme cytochrome. Members of the MopB_Nitrate-R-NapA CD belong to the molybdopterin_binding (MopB) superfamily of proteins.

>cd02750 MopB_Nitrate-R-NarG-like Respiratory nitrate reductase A (NarGHI), alpha chain (NarG) and related proteins

Probab=89.78  E-value=6.7  Score=37.54  Aligned_cols=58  Identities=19%  Similarity=0.204  Sum_probs=41.0

Q ss_pred             CCCCcEEEEEeCCC-CcH-HHHHHHHHHHHcCCeEEEEeCCCCCccccccCEEEEcCCCcc
Q 019775           99 LSSDDILVMFSKSG-NTE-ELLKVVPCAKAKGAYLVSVTSVEGNALAAVCDMNVHLPVERE  157 (336)
Q Consensus        99 ~~~~dlvi~iS~sG-~~~-~~~~~~~~ak~~g~~vi~IT~~~~s~l~~~ad~~i~~~~~~~  157 (336)
                      +..-|++|++.... .+. .....+..+|++|+++|+|-. ..++.+..||..+.+..+++
T Consensus       168 ~~~ad~il~~G~N~~~~~~~~~~~l~~ar~~GaklividP-r~s~ta~~Ad~~l~i~PGtD  227 (461)
T cd02750         168 WYNADYIIMWGSNVPVTRTPDAHFLTEARYNGAKVVVVSP-DYSPSAKHADLWVPIKPGTD  227 (461)
T ss_pred             HhcCcEEEEECCChHHccCchHHHHHHHHHCCCEEEEEcC-CCCcchhhcCEEeccCCCcH
Confidence            45568888885543 221 122345568999999999965 56888899999998876655

Under anaerobic conditions in the presence of nitrate, E. coli synthesizes the cytoplasmic membrane-bound quinol-nitrate oxidoreductase (NarGHI), which reduces nitrate to nitrite and forms part of a redox loop generating a proton-motive force. Found in prokaryotes and some archaea, NarGHI usually functions as a heterotrimer. The alpha chain contains the molybdenum cofactor-containing Mo-bisMGD catalytic subunit. Members of the MopB_Nitrate-R-NarG-like CD belong to the molybdopterin_binding (MopB) superfamily of proteins.

>PRK13532 nitrate reductase catalytic subunit; Provisional

Probab=89.72  E-value=5.4  Score=41.30  Aligned_cols=85  Identities=8%  Similarity=0.146  Sum_probs=51.6

Q ss_pred             CCCCcEEEEEeCCC-CcH-HHHHHHHHH--HHcCCeEEEEeCCCCCccccccCEEEEcCCCcccCCCCCCChhHHHHHHH
Q 019775           99 LSSDDILVMFSKSG-NTE-ELLKVVPCA--KAKGAYLVSVTSVEGNALAAVCDMNVHLPVERELCPFDLAPVTSTAIQMV  174 (336)
Q Consensus        99 ~~~~dlvi~iS~sG-~~~-~~~~~~~~a--k~~g~~vi~IT~~~~s~l~~~ad~~i~~~~~~~~~~~~~~~~~s~~~~~~  174 (336)
                      +..-|++|++.... .+. ....-+..+  +++|+++|+|-. ..++.+..||..+.+..+++               ..
T Consensus       204 i~~a~~il~~G~Np~~~~p~~~~~i~~a~~~~~G~kiiviDP-r~t~ta~~ad~~l~irPGtD---------------~a  267 (830)
T PRK13532        204 IEAADAFVLWGSNMAEMHPILWSRVTDRRLSNPDVKVAVLST-FEHRSFELADNGIIFTPQTD---------------LA  267 (830)
T ss_pred             HHhCCEEEEECCCchhcCcHHHHHHHHHHhcCCCCeEEEECC-CCCchhHhcCeeeccCCCCc---------------HH
Confidence            34568888886543 221 111222223  358999999965 46778889999998877766               44


Q ss_pred             HHHHHHHHHHhhcCCChHHHhhcCCC
Q 019775          175 FGDTVAIAMMGARNLTRDEYAANHPA  200 (336)
Q Consensus       175 l~d~l~~~~~~~~~~~~~~~~~~~~~  200 (336)
                      ++..++..++.+... ..+|.+.+..
T Consensus       268 l~~am~~~ii~~~~~-D~~Fv~~~t~  292 (830)
T PRK13532        268 ILNYIANYIIQNNAV-NWDFVNKHTN  292 (830)
T ss_pred             HHHHHHHHHHHCCcc-cHHHHHHHhc
Confidence            555555555555433 3455555443

>cd02755 MopB_Thiosulfate-R-like The MopB_Thiosulfate-R-like CD contains thiosulfate-, sulfur-, and polysulfide-reductases, and other related proteins

Probab=89.58  E-value=8.8  Score=36.64  Aligned_cols=59  Identities=15%  Similarity=0.151  Sum_probs=42.3

Q ss_pred             CCCCCcEEEEEeCC-CCcH--HHHHHHHHHHHcCCeEEEEeCCCCCccccccCEEEEcCCCcc
Q 019775           98 ILSSDDILVMFSKS-GNTE--ELLKVVPCAKAKGAYLVSVTSVEGNALAAVCDMNVHLPVERE  157 (336)
Q Consensus        98 ~~~~~dlvi~iS~s-G~~~--~~~~~~~~ak~~g~~vi~IT~~~~s~l~~~ad~~i~~~~~~~  157 (336)
                      .+..-|++|++... ..+.  ....-+..++++|+++|+|-.. .++.+..||..+.+..+.+
T Consensus       153 d~~~ad~il~~G~n~~~~~~~~~~~~~~~a~~~g~kiivIdPr-~t~ta~~AD~~i~i~PGtD  214 (454)
T cd02755         153 DFENARYIILFGRNLAEAIIVVDARRLMKALENGAKVVVVDPR-FSELASKADEWIPIKPGTD  214 (454)
T ss_pred             chhcCCEEEEECcCcccccccHHHHHHHHHHHCCCeEEEECCC-CChhhHhhCEecCCCCCcH
Confidence            45566888888544 3332  1345566788899999999875 6777889999998877655

Thiosulfate reductase catalyzes the cleavage of sulfur-sulfur bonds in thiosulfate. Polysulfide reductase is a membrane-bound enzyme that catalyzes the reduction of polysulfide using either hydrogen or formate as the electron donor. Members of the MopB_Thiosulfate-R-like CD belong to the molybdopterin_binding (MopB) superfamily of proteins.

>cd02762 MopB_1 The MopB_1 CD includes a group of related uncharacterized bacterial molybdopterin-binding oxidoreductase-like domains with a putative N-terminal iron-sulfur [4Fe-4S] cluster binding site and molybdopterin cofactor binding site

Probab=89.42  E-value=9.9  Score=37.18  Aligned_cols=59  Identities=15%  Similarity=0.259  Sum_probs=41.6

Q ss_pred             CCCCCcEEEEEeCC-CCcH-------HHHHHHHHHHHcCCeEEEEeCCCCCccccccCEEEEcCCCcc
Q 019775           98 ILSSDDILVMFSKS-GNTE-------ELLKVVPCAKAKGAYLVSVTSVEGNALAAVCDMNVHLPVERE  157 (336)
Q Consensus        98 ~~~~~dlvi~iS~s-G~~~-------~~~~~~~~ak~~g~~vi~IT~~~~s~l~~~ad~~i~~~~~~~  157 (336)
                      .+..-|++|++-.. ..+.       .....++.++++|+++|+|-. ..++.+..||..+.+..+++
T Consensus       153 D~~~ad~il~~G~N~~~s~~~~~~~~~~~~~~~~a~~~G~kliviDP-r~t~ta~~AD~~l~irPGtD  219 (539)
T cd02762         153 DIDRTDYLLILGANPLQSNGSLRTAPDRVLRLKAAKDRGGSLVVIDP-RRTETAKLADEHLFVRPGTD  219 (539)
T ss_pred             hhhhCCEEEEEecChHhhCCccccccCHHHHHHHHHhCCCEEEEECC-CCchhhHhcCEeeCcCCCcH
Confidence            34556888888543 2221       122356778999999999966 56777889999999877766

These members belong to the molybdopterin_binding (MopB) superfamily of proteins.

>COG4015 Predicted dinucleotide-utilizing enzyme of the ThiF/HesA family [General function prediction only]

Probab=88.85  E-value=1.6  Score=34.86  Aligned_cols=34  Identities=21%  Similarity=0.342  Sum_probs=25.4

Q ss_pred             CCCcEEEEEeCCCC-cHHHHHHHHHHHHcCCeEEE
Q 019775          100 SSDDILVMFSKSGN-TEELLKVVPCAKAKGAYLVS  133 (336)
Q Consensus       100 ~~~dlvi~iS~sG~-~~~~~~~~~~ak~~g~~vi~  133 (336)
                      -.+|++++.-..|. .+-+..++++|+++|+++|+
T Consensus       105 l~gDVvvi~IAGGdT~PvTaaii~ya~~rG~~Tis  139 (217)
T COG4015         105 LKGDVVVICIAGGDTIPVTAAIINYAKERGIKTIS  139 (217)
T ss_pred             hcCCEEEEEecCCCcchhHHHHHHHHHHcCceEee
Confidence            35576555555555 57788889999999999886

>cd02766 MopB_3 The MopB_3 CD includes a group of related uncharacterized bacterial and archaeal molybdopterin-binding oxidoreductase-like domains with a putative N-terminal iron-sulfur [4Fe-4S] cluster binding site and molybdopterin cofactor binding site

Probab=88.78  E-value=7.3  Score=37.76  Aligned_cols=58  Identities=19%  Similarity=0.405  Sum_probs=42.8

Q ss_pred             CCCCcEEEEEeCC-CC-cHHHHHHHHHHHHcCCeEEEEeCCCCCccccccCEEEEcCCCcc
Q 019775           99 LSSDDILVMFSKS-GN-TEELLKVVPCAKAKGAYLVSVTSVEGNALAAVCDMNVHLPVERE  157 (336)
Q Consensus        99 ~~~~dlvi~iS~s-G~-~~~~~~~~~~ak~~g~~vi~IT~~~~s~l~~~ad~~i~~~~~~~  157 (336)
                      +..-|++|++... .. ++.....+..++++|+++|+|-. ..++.+..||..+.+..+++
T Consensus       155 ~~~ad~il~~G~Np~~s~p~~~~~~~~a~~~GaklivvDP-r~t~ta~~Ad~~l~i~PGtD  214 (501)
T cd02766         155 MVNADLIVIWGINPAATNIHLMRIIQEARKRGAKVVVIDP-YRTATAARADLHIQIRPGTD  214 (501)
T ss_pred             HhcCCEEEEECCChhhhchhHHHHHHHHHHCCCEEEEECC-CCCccHHHhCeeeccCCCcH
Confidence            4566788888543 33 23444556779999999999965 57788899999999877766

These members belong to the molybdopterin_binding (MopB) superfamily of proteins

>cd02752 MopB_Formate-Dh-Na-like Formate dehydrogenase N, alpha subunit (Formate-Dh-Na) is a major component of nitrate respiration in bacteria such as in the E

Probab=88.32  E-value=6.4  Score=39.39  Aligned_cols=59  Identities=22%  Similarity=0.256  Sum_probs=40.5

Q ss_pred             CCCCCcEEEEEeCC-CCc-HHHHHHHHHHHHc-CCeEEEEeCCCCCccccccCEEEEcCCCcc
Q 019775           98 ILSSDDILVMFSKS-GNT-EELLKVVPCAKAK-GAYLVSVTSVEGNALAAVCDMNVHLPVERE  157 (336)
Q Consensus        98 ~~~~~dlvi~iS~s-G~~-~~~~~~~~~ak~~-g~~vi~IT~~~~s~l~~~ad~~i~~~~~~~  157 (336)
                      .+..-|++|++... ..+ +....-+..|+++ |+++|+|-.. .+..+..||+.+.+..+.+
T Consensus       166 Di~nAd~Ili~GsNpae~hPv~~~~i~~Ak~~~GaklIvVDPR-~t~Ta~~AD~~l~irPGTD  227 (649)
T cd02752         166 DIKNADVILVMGGNPAEAHPVSFKWILEAKEKNGAKLIVVDPR-FTRTAAKADLYVPIRSGTD  227 (649)
T ss_pred             HHhcCCEEEEECCChHHhCcHHHHHHHHHHHcCCCeEEEEcCC-CCchhHhcCEeeCcCCChH
Confidence            35567888888543 322 3333445667776 9999999875 6667789999998877655

coli formate dehydrogenase N (Fdh-N). Fdh-N is a membrane protein that is a complex of three different subunits and is the major electron donor to the nitrate respiratory chain. Also included in this CD is the Desulfovibrio gigas tungsten formate dehydrogenase, DgW-FDH. In contrast to Fdh-N, which is a functional heterotrimer, DgW-FDH is a heterodimer. The DgW-FDH complex is composed of a large subunit carrying the W active site and one [4Fe-4S] center, and a small subunit that harbors a series of three [4Fe-4S] clusters as well as a putative vacant binding site for a fourth cluster. The smaller subunit is not included in this alignment. Members of the MopB_Formate-Dh-Na-like CD belong to the molybdopterin_binding (MopB) superfamily of proteins.

>KOG2446 consensus Glucose-6-phosphate isomerase [Carbohydrate transport and metabolism]

Probab=88.29  E-value=2.3  Score=39.42  Aligned_cols=86  Identities=17%  Similarity=0.264  Sum_probs=62.4

Q ss_pred             hHHHHHHHHHHcCC---------CeEEEEeccchHHHHHHHHHHHHhc---CCeeeecC--CccccccccCCCCCC-cEE
Q 019775           41 PHTLTFTQTLLKCR---------GTIFFTGVGKSGFVANKISQTLISL---GIKSGFLN--PLDALHGDIGILSSD-DIL  105 (336)
Q Consensus        41 ~~i~~~~~~i~~a~---------~~I~i~G~G~s~~~a~~~~~~l~~~---g~~~~~~~--~~~~~~~~~~~~~~~-dlv  105 (336)
                      +.+.++++.+.+-+         .-|.=+|.|.|..=-.+....|.-.   |..++++.  |+..+...+..++++ .++
T Consensus       128 ~~ikeFsd~i~SG~w~g~tgk~itdVvnIGIGGSdLGP~mVteALk~y~~~gl~~~FvsNiD~t~ia~~~~kl~pEttLf  207 (546)
T KOG2446|consen  128 DHIKEFSDDIRSGSWKGYTGKKITDVVNIGIGGSDLGPLMVTEALKPYGPGGLEVHFVSNIDGTHIAEVLKKLNPETTLF  207 (546)
T ss_pred             HHHHHHHHHhhcCCCCCCCCCeeeeEEEecccccccchHHHHHhhccCCCCCceEEEEecCCchhHHHHHhccCccceEE
Confidence            45677788876431         3577889999985444555555544   57788877  556666667777665 578


Q ss_pred             EEEeCCCCcHHHHHHHHHHHH
Q 019775          106 VMFSKSGNTEELLKVVPCAKA  126 (336)
Q Consensus       106 i~iS~sG~~~~~~~~~~~ak~  126 (336)
                      |++|.++.|.|++..++.+|+
T Consensus       208 iVaSKTftT~ETitnaetak~  228 (546)
T KOG2446|consen  208 IVASKTFTTAETITNAETAKE  228 (546)
T ss_pred             EEEecCcCcHHHHhhHHHHHH
Confidence            889999999999999998887

>KOG0475 consensus Cl- channel CLC-3 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]

Probab=88.23  E-value=0.93  Score=43.86  Aligned_cols=64  Identities=16%  Similarity=0.134  Sum_probs=53.6

Q ss_pred             CchhhhhhhhhhhccccCCCCccccCCCcHHHHHHHHHhcCcceEEEEcCCCcEEEEeeHHHHHHHH
Q 019775          201 GRIGKSLIFKVQDVMKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRRTL  267 (336)
Q Consensus       201 ~~~~~~~~~~v~~im~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~it~~dl~~~~  267 (336)
                      ...+.+.+...+++|...+-  ++....+++-+++++++.+.+++.|.. +|++.|+||.+|++...
T Consensus       631 ~~~~~~~~~~lk~il~~tp~--tv~d~tp~~~v~~~F~~lg~~~~~v~~-~G~l~Giitkkd~l~~~  694 (696)
T KOG0475|consen  631 AVAGIPSRLDLKDILDMTPF--TVTDLTPMETVVDLFRKLGLRQILVTK-NGILLGIITKKDCLRHT  694 (696)
T ss_pred             ccCCCCCCcCceeeccCCcc--cccccCcHHHHHHHHHhhCceEEEEcc-CCeeEeeeehHHHHHhh
Confidence            34455567788899988754  899999999999999999999998875 89999999999998754

>PF13793 Pribosyltran_N: N-terminal domain of ribose phosphate pyrophosphokinase; PDB: 2JI4_A 1DKU_B 1IBS_B 1DKR_B 3MBI_C 3LRT_B 3LPN_B 3NAG_B 2H07_B 2H06_B

Probab=88.17  E-value=4.3  Score=30.75  Aligned_cols=79  Identities=16%  Similarity=0.158  Sum_probs=50.5

Q ss_pred             EEEeccchHHHHHHHHHHHHhc--CCeeeecCCccccccccCCCCCCcEEEEEeCCCCc-H---HHHHHHHHHHHcCCe-
Q 019775           58 FFTGVGKSGFVANKISQTLISL--GIKSGFLNPLDALHGDIGILSSDDILVMFSKSGNT-E---ELLKVVPCAKAKGAY-  130 (336)
Q Consensus        58 ~i~G~G~s~~~a~~~~~~l~~~--g~~~~~~~~~~~~~~~~~~~~~~dlvi~iS~sG~~-~---~~~~~~~~ak~~g~~-  130 (336)
                      .+++..++..+|+.++..|...  ...+.-+++++........+...|++|+-|..... .   +++-++..+|+.|++ 
T Consensus         2 ~I~~g~~~~~La~~ia~~L~~~~~~~~~~~F~dGE~~v~i~~~v~g~dv~iiqs~~~~~nd~lmeLll~i~a~r~~~a~~   81 (116)
T PF13793_consen    2 VIFSGSSSQDLAERIAEALGIPLGKVETKRFPDGETYVRIPESVRGKDVFIIQSTSPPVNDNLMELLLLIDALRRAGAKR   81 (116)
T ss_dssp             EEEESSSGHHHHHHHHHHTTS-EE-EEEEE-TTS-EEEEESS--TTSEEEEE---SSSHHHHHHHHHHHHHHHHHTTBSE
T ss_pred             EEEECCCCHHHHHHHHHHhCCceeeeEEEEcCCCCEEEEecccccCCceEEEEecCCchhHHHHHHHHHHHHHHHcCCcE
Confidence            5778888889999999998754  33334466777766666677888999999988762 3   345557888888875 


Q ss_pred             EEEEeC
Q 019775          131 LVSVTS  136 (336)
Q Consensus       131 vi~IT~  136 (336)
                      |.+|-.
T Consensus        82 i~~ViP   87 (116)
T PF13793_consen   82 ITLVIP   87 (116)
T ss_dssp             EEEEES
T ss_pred             EEEecc
Confidence            555553

...

>TIGR03479 DMSO_red_II_alp DMSO reductase family type II enzyme, molybdopterin subunit

Probab=88.15  E-value=7.6  Score=40.69  Aligned_cols=58  Identities=19%  Similarity=0.235  Sum_probs=41.0

Q ss_pred             CCCCcEEEEEeCC-CCc-HHHHHHHHHHHHcCCeEEEEeCCCCCccccccCEEEEcCCCcc
Q 019775           99 LSSDDILVMFSKS-GNT-EELLKVVPCAKAKGAYLVSVTSVEGNALAAVCDMNVHLPVERE  157 (336)
Q Consensus        99 ~~~~dlvi~iS~s-G~~-~~~~~~~~~ak~~g~~vi~IT~~~~s~l~~~ad~~i~~~~~~~  157 (336)
                      +..-|++|++... ..+ ......+..|+++|+++|+|-. ..++.++.||..+.+..+++
T Consensus       222 ~~na~~Il~~G~Np~~t~~~~~~~l~~a~~~GaklVvIdP-r~t~tA~~AD~wlpirPGTD  281 (912)
T TIGR03479       222 WFNADYIIMWGSNPSVTRIPDAHFLSEARYNGARVVSIAP-DYNPSTIHADLWLPVRVGTD  281 (912)
T ss_pred             hhcCcEEEEecCChHHcCCchHHHHHHHHhcCCeEEEECC-CCChhhhhCCeecCCCCCcH
Confidence            3456777777443 333 2234556678899999999965 57788899999998877666

This model represents the molybdopterin subunit, typically called the alpha subunit, of various proteins that also contain an iron-sulfur subunit and a heme b subunit. The group includes two distinct but very closely related periplasmic proteins of anaerobic respiration, selenate reductase and chlorate reductase. Other members of this family include dimethyl sulphide dehydrogenase, ethylbenzene dehydrogenase, and an archaeal respiratory nitrate reductase. This alpha subunit has a twin-arginine translocation (TAT) signal for Sec-independent translocation across the plasma membrane.

>PRK06702 O-acetylhomoserine aminocarboxypropyltransferase; Validated

Probab=87.99  E-value=7.8  Score=36.76  Aligned_cols=112  Identities=17%  Similarity=0.151  Sum_probs=67.0

Q ss_pred             hHHHHHHHHHHcCCCeEEEEeccchHHHHHHHH-----------------------HHHHhcCCeeeecCCccccccccC
Q 019775           41 PHTLTFTQTLLKCRGTIFFTGVGKSGFVANKIS-----------------------QTLISLGIKSGFLNPLDALHGDIG   97 (336)
Q Consensus        41 ~~i~~~~~~i~~a~~~I~i~G~G~s~~~a~~~~-----------------------~~l~~~g~~~~~~~~~~~~~~~~~   97 (336)
                      +.+++.+..+..+ ....+++.|.+...+-.++                       ..+.++|..+.++....+......
T Consensus        64 ~~lE~~la~leg~-~~av~~~SG~aAi~~al~all~~GD~VI~~~~~Y~~T~~~~~~~l~~~Gi~v~~vd~~~d~~~l~~  142 (432)
T PRK06702         64 AAFEQKLAELEGG-VGAVATASGQAAIMLAVLNICSSGDHLLCSSTVYGGTFNLFGVSLRKLGIDVTFFNPNLTADEIVA  142 (432)
T ss_pred             HHHHHHHHHHhCC-CcEEEECCHHHHHHHHHHHhcCCCCEEEECCCchHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHH
Confidence            4566666666666 3677777777664432221                       114556777766643111111122


Q ss_pred             CCCCCcEEEEEeCCCCcH----HHHHHHHHHHHcCCeEEEEeCCC------CCccccccCEEEEcCCC
Q 019775           98 ILSSDDILVMFSKSGNTE----ELLKVVPCAKAKGAYLVSVTSVE------GNALAAVCDMNVHLPVE  155 (336)
Q Consensus        98 ~~~~~dlvi~iS~sG~~~----~~~~~~~~ak~~g~~vi~IT~~~------~s~l~~~ad~~i~~~~~  155 (336)
                      .++++.-+|++-..|+..    ++-++++.|+++|+.+|.  ++.      ..|+..-||+++..-+.
T Consensus       143 ~I~~~Tk~I~~e~pgnP~~~v~Di~~I~~iA~~~gi~liv--D~T~~tP~~~~pl~~GADIvv~S~TK  208 (432)
T PRK06702        143 LANDKTKLVYAESLGNPAMNVLNFKEFSDAAKELEVPFIV--DNTLATPYLCQAFEHGANIIVHSTTK  208 (432)
T ss_pred             hCCcCCeEEEEEcCCCccccccCHHHHHHHHHHcCCEEEE--ECCCCchhhCChhhcCCCEEEEcccc
Confidence            344544455566678777    899999999999987754  332      44666668988876543

>cd02765 MopB_4 The MopB_4 CD includes a group of related uncharacterized bacterial and archaeal molybdopterin-binding oxidoreductase-like domains with a putative N-terminal iron-sulfur [4Fe-4S] cluster binding site and molybdopterin cofactor binding site

Probab=87.85  E-value=9.4  Score=37.62  Aligned_cols=85  Identities=12%  Similarity=0.120  Sum_probs=55.8

Q ss_pred             CCCCcEEEEEeCCC-Cc-HHHHHHHHHHHHcCCeEEEEeCCCCCccccccCEEEEcCCCcccCCCCCCChhHHHHHHHHH
Q 019775           99 LSSDDILVMFSKSG-NT-EELLKVVPCAKAKGAYLVSVTSVEGNALAAVCDMNVHLPVERELCPFDLAPVTSTAIQMVFG  176 (336)
Q Consensus        99 ~~~~dlvi~iS~sG-~~-~~~~~~~~~ak~~g~~vi~IT~~~~s~l~~~ad~~i~~~~~~~~~~~~~~~~~s~~~~~~l~  176 (336)
                      +..-|++|++...- .+ ......+..++++|+++|+|-.. .++.+..||..+.+..+++               ..++
T Consensus       157 ~~~ad~il~~G~Np~~s~~~~~~~~~~a~~~GakliviDPr-~s~ta~~Ad~~l~irPGTD---------------~al~  220 (567)
T cd02765         157 WVNAKTIIIWGSNILETQFQDAEFFLDARENGAKIVVIDPV-YSTTAAKADQWVPIRPGTD---------------PALA  220 (567)
T ss_pred             HhcCcEEEEECCChHHccchhHHHHHHHHHcCCeEEEECCC-CCcchhhcCEEeccCCCch---------------HHHH
Confidence            34568888886653 22 23455667889999999999664 6777889999998877666               3444


Q ss_pred             HHHHHHHHhhcCCChHHHhhcCCC
Q 019775          177 DTVAIAMMGARNLTRDEYAANHPA  200 (336)
Q Consensus       177 d~l~~~~~~~~~~~~~~~~~~~~~  200 (336)
                      ..++..+.++. .-.++|.+.+.+
T Consensus       221 ~am~~~ii~~~-l~D~~Fi~~~t~  243 (567)
T cd02765         221 LGMINYILEHN-WYDEAFLKSNTS  243 (567)
T ss_pred             HHHHHHHHhcC-cccHHHHHhcCC
Confidence            44444455543 333456665543

These members belong to the molybdopterin_binding (MopB) superfamily of proteins

>COG4535 CorC Putative Mg2+ and Co2+ transporter CorC [Inorganic ion transport and metabolism]

Probab=87.63  E-value=1.6  Score=37.16  Aligned_cols=93  Identities=15%  Similarity=0.147  Sum_probs=64.8

Q ss_pred             hhhhccccCCCCccccCCCcHHHHHHHHHhcCcceEEEEcCCCcEEEEeeHHHHHHHHHhcCCch----hhhhHhhhcCC
Q 019775          210 KVQDVMKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRRTLKASGEGI----FKLTVGEMCNR  285 (336)
Q Consensus       210 ~v~~im~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~it~~dl~~~~~~~~~~~----~~~~i~~~~~~  285 (336)
                      .+.++.+|   .+.++....+.-.++.|+.+++.-..|+|+=|.+-|+||.+|++..+...-++.    ....+..+.. 
T Consensus       134 ~i~~lLRP---av~VPESKrvd~lLkeFR~~RnHMAIViDEfGgVsGLVTIEDiLEqIVGdIEDE~Deee~~dI~~ls~-  209 (293)
T COG4535         134 DIKELLRP---AVVVPESKRVDRLLKEFRSQRNHMAIVIDEFGGVSGLVTIEDILEQIVGDIEDEYDEEEDADIRQLSR-  209 (293)
T ss_pred             cHHHhccc---ceecccchhHHHHHHHHHhhcCceEEEEeccCCeeeeEEHHHHHHHHhcccccccchhhhhhhHhhcC-
Confidence            45566677   457899999999999999999989999998899999999999999886432111    1122444432 


Q ss_pred             CCeeeCCCccHHHHHHHhcCC
Q 019775          286 SPRTIGPDAMAVEAMQKMESP  306 (336)
Q Consensus       286 ~~~~v~~~~~l~~~~~~~~~~  306 (336)
                      .-+.|..=+++++.-+.|-.+
T Consensus       210 ~~~~VrALT~IedFNe~F~t~  230 (293)
T COG4535         210 HTWRVRALTEIEDFNEAFGTH  230 (293)
T ss_pred             CceEEEecccHHHHHHHhcCC
Confidence            234566666666655555443

>cd06167 LabA_like LabA_like proteins

Probab=87.21  E-value=7.2  Score=30.63  Aligned_cols=104  Identities=13%  Similarity=0.026  Sum_probs=65.0

Q ss_pred             hHHHHHHHHHHcCC--CeEEEEeccchHHHHHHHHHHHHhcCCeeeecCCcc--------ccc---cccC--CCCCCcEE
Q 019775           41 PHTLTFTQTLLKCR--GTIFFTGVGKSGFVANKISQTLISLGIKSGFLNPLD--------ALH---GDIG--ILSSDDIL  105 (336)
Q Consensus        41 ~~i~~~~~~i~~a~--~~I~i~G~G~s~~~a~~~~~~l~~~g~~~~~~~~~~--------~~~---~~~~--~~~~~dlv  105 (336)
                      .++.++.+.+....  ....+|+.......-..+...|.+.|..+...+...        +..   ..+.  .-.+-|.+
T Consensus        24 ~d~~~l~~~~~~~~~~~~~r~y~~~~~~~~~~~~~~~L~~~g~~~~~~~~~~~~~~~~~~D~~l~~d~~~~~~~~~~d~i  103 (149)
T cd06167          24 FDYRKLLEFLRDGGEIVLARAYGNWTSPERQRGFLDALRRLGFEPIQKPLRTRGSGKKGVDVALAIDALELAYKRRIDTI  103 (149)
T ss_pred             cCHHHHHHHHHhCCeEEEEEEEEecCCchhHHHHHHHHHHCCcEEEEEcceecCCcccCccHHHHHHHHHHhhhcCCCEE
Confidence            44666666665321  244555544432344667788999999998765321        110   0011  12356899


Q ss_pred             EEEeCCCCcHHHHHHHHHHHHcCCeEEEEeCC--CCCccccccC
Q 019775          106 VMFSKSGNTEELLKVVPCAKAKGAYLVSVTSV--EGNALAAVCD  147 (336)
Q Consensus       106 i~iS~sG~~~~~~~~~~~ak~~g~~vi~IT~~--~~s~l~~~ad  147 (336)
                      +++|..+   +...+++.++++|.+|+++...  ....+.+.||
T Consensus       104 vLvSgD~---Df~~~i~~lr~~G~~V~v~~~~~~~s~~L~~~~d  144 (149)
T cd06167         104 VLVSGDS---DFVPLVERLRELGKRVIVVGFEAKTSRELRKAAD  144 (149)
T ss_pred             EEEECCc---cHHHHHHHHHHcCCEEEEEccCccChHHHHHhCC
Confidence            9999876   7888889999999999999875  3334555555

A well conserved group of bacterial proteins with no defined function. LabA, a member from Synechococcus elongatus PCC 7942, has been shown to play a role in cyanobacterial circadian timing. It is required for negative feedback regulation of the autokinase/autophosphatase KaiC, a central component of the circadian clock system. In particular, LabA seems necessary for KaiC-dependent repression of gene expression.

>cd02770 MopB_DmsA-EC This CD (MopB_DmsA-EC) includes the DmsA enzyme of the dmsABC operon encoding the anaerobic dimethylsulfoxide reductase (DMSOR) of Escherichia coli and other related DMSOR-like enzymes

Probab=87.00  E-value=3.6  Score=41.04  Aligned_cols=58  Identities=16%  Similarity=0.191  Sum_probs=40.9

Q ss_pred             CCCCcEEEEEeCCCCcHH-----HHHHHHHHHHcCCeEEEEeCCCCCccc-cccCEEEEcCCCcc
Q 019775           99 LSSDDILVMFSKSGNTEE-----LLKVVPCAKAKGAYLVSVTSVEGNALA-AVCDMNVHLPVERE  157 (336)
Q Consensus        99 ~~~~dlvi~iS~sG~~~~-----~~~~~~~ak~~g~~vi~IT~~~~s~l~-~~ad~~i~~~~~~~  157 (336)
                      +..-|++|++........     ....+..+|++|+++|+|-... ++.+ ..||..+.+..+++
T Consensus       164 ~~~a~~ii~wG~N~~~~~~~~~~~~~~~~~a~~~G~klivIDPr~-t~tA~~~AD~~i~irPGTD  227 (617)
T cd02770         164 LKDSKLVVLFGHNPAETRMGGGGSTYYYLQAKKAGAKFIVIDPRY-TDTAVTLADEWIPIRPGTD  227 (617)
T ss_pred             HhcCCEEEEECCCHHHhcCCCCchHHHHHHHHHcCCeEEEECCCC-CccccccCCEEECCCCCcH
Confidence            345688888866533222     2345678899999999997764 5555 48999998877666

Unlike other DMSOR-like enzymes, this group has a predicted N-terminal iron-sulfur [4Fe-4S] cluster binding site. These members belong to the molybdopterin_binding (MopB) superfamily of proteins.

>cd02763 MopB_2 The MopB_2 CD includes a group of related uncharacterized bacterial molybdopterin-binding oxidoreductase-like domains with a putative N-terminal iron-sulfur [4Fe-4S] cluster binding site and molybdopterin cofactor binding site

Probab=86.99  E-value=11  Score=37.97  Aligned_cols=58  Identities=17%  Similarity=0.223  Sum_probs=40.4

Q ss_pred             CCCCcEEEEEeCCCCc--HHHHHHHHHHHHcCCeEEEEeCCCCCccccccCEEEEcCCCcc
Q 019775           99 LSSDDILVMFSKSGNT--EELLKVVPCAKAKGAYLVSVTSVEGNALAAVCDMNVHLPVERE  157 (336)
Q Consensus        99 ~~~~dlvi~iS~sG~~--~~~~~~~~~ak~~g~~vi~IT~~~~s~l~~~ad~~i~~~~~~~  157 (336)
                      +..-|++|++......  .-+...+..+|++|+++|+|-. ..+..+..||..+.+..+++
T Consensus       153 ~~~Ad~Ivl~G~n~~~~~~p~~~~i~~ak~~GaKlIvIDP-r~t~ta~~AD~wl~irPGTD  212 (679)
T cd02763         153 LEHTKYFMMIGVAEDHHSNPFKIGIQKLKRRGGKFVAVNP-VRTGYAAIADEWVPIKPGTD  212 (679)
T ss_pred             HHhCCEEEEECCCCcccCchHHHHHHHHHhCCCcEEEEcC-cCCcchHhhCeecCcCCCcH
Confidence            3456788888643221  1233456678899999999965 46667899999998876655

These members belong to the molybdopterin_binding (MopB) superfamily of proteins

>PRK07860 NADH dehydrogenase subunit G; Validated

Probab=86.50  E-value=6.9  Score=40.32  Aligned_cols=117  Identities=13%  Similarity=0.090  Sum_probs=64.8

Q ss_pred             hHHHHHHHHHHcCCCeEEEEeccchHHHHHHHHHHHHh--cCCeeeecCC-------cccc---------ccccCCCCCC
Q 019775           41 PHTLTFTQTLLKCRGTIFFTGVGKSGFVANKISQTLIS--LGIKSGFLNP-------LDAL---------HGDIGILSSD  102 (336)
Q Consensus        41 ~~i~~~~~~i~~a~~~I~i~G~G~s~~~a~~~~~~l~~--~g~~~~~~~~-------~~~~---------~~~~~~~~~~  102 (336)
                      +.++.+++.+.+..+.|-+++.|....-..++..+|.+  +|-+-+....       ....         ......+..-
T Consensus       298 EAld~ia~kL~~i~~~ia~~~s~~~t~Ee~y~~~kl~r~~lgt~nid~~~r~~~~~~~~~~~~~~~g~~~~~~~~Die~a  377 (797)
T PRK07860        298 EALAVAARGLAAARGRVGVLVGGRLTVEDAYAYAKFARVALGTNDIDFRARPHSAEEADFLAARVAGRGLGVTYADLEKA  377 (797)
T ss_pred             HHHHHHHHHHHhhhccEEEEeCCCCCHHHHHHHHHHHHHhcCCCccccccccccchHHHHHHhhccCCCCCCCHHHHHhC
Confidence            45666666666553457777766544444445556654  4443221000       0000         0111224556


Q ss_pred             cEEEEEeCC-CCcHH-H-HHHHHHHHHcCCeEEEEeCCCCCccccccCEEEEcCCCcc
Q 019775          103 DILVMFSKS-GNTEE-L-LKVVPCAKAKGAYLVSVTSVEGNALAAVCDMNVHLPVERE  157 (336)
Q Consensus       103 dlvi~iS~s-G~~~~-~-~~~~~~ak~~g~~vi~IT~~~~s~l~~~ad~~i~~~~~~~  157 (336)
                      |+++++... ..+.. + .++.+.++++|+++|+|-.......+++||..+.+..+.+
T Consensus       378 d~ill~G~N~~~~~P~~~~ri~~a~k~~GakiivIDPr~t~t~a~~Ad~~l~irPGtD  435 (797)
T PRK07860        378 PAVLLVGFEPEEESPIVFLRLRKAARKHGLKVYSIAPFATRGLEKMGGTLLRTAPGGE  435 (797)
T ss_pred             CEEEEEeCChhhhhHHHHHHHHHHHHhCCCEEEEECCCCchhhhhhhhceeccCCCcH
Confidence            888888543 44322 2 2334555789999999976555456788999887755544

>cd02761 MopB_FmdB-FwdB The MopB_FmdB-FwdB CD contains the molybdenum/tungsten formylmethanofuran dehydrogenases, subunit B (FmdB/FwdB), and other related proteins

Probab=86.39  E-value=5.4  Score=37.40  Aligned_cols=119  Identities=17%  Similarity=0.255  Sum_probs=64.1

Q ss_pred             cCCh-hHHHHHHHHHHcCCCeEEEEeccchHHHHHHHHHHHH-hcCCeeeecC-----Cc-cccc------cccCCC-CC
Q 019775           37 HLSL-PHTLTFTQTLLKCRGTIFFTGVGKSGFVANKISQTLI-SLGIKSGFLN-----PL-DALH------GDIGIL-SS  101 (336)
Q Consensus        37 ~~~~-~~i~~~~~~i~~a~~~I~i~G~G~s~~~a~~~~~~l~-~~g~~~~~~~-----~~-~~~~------~~~~~~-~~  101 (336)
                      .++. +.++.+++.|.+.+ +..++|.|.+..-..+..++|. .+|-.+....     .. ....      .....+ .+
T Consensus        53 ~isWdeAl~~ia~~L~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~g~~~~~~~di~~~  131 (415)
T cd02761          53 PVSLEEAIEKAAEILKEAK-RPLFYGLGTTVCEAQRAGIELAEKLGAIIDHAASVCHGPNLLALQDSGWPTTTLGEVKNR  131 (415)
T ss_pred             CCCcHHHHHHHHHHHHhhc-CCEEEEcccchHHHHHHHHHHHHHHCCCccccccccccchHHHHHhCCCccccHHHHHhc
Confidence            3443 66888888888774 5566677766533333334443 3453221111     00 0000      111123 35


Q ss_pred             CcEEEEEeCCC-Cc-HHHH-HHH-------HHHHHcCCeEEEEeCCCCCccccccCEEEEcCCCcc
Q 019775          102 DDILVMFSKSG-NT-EELL-KVV-------PCAKAKGAYLVSVTSVEGNALAAVCDMNVHLPVERE  157 (336)
Q Consensus       102 ~dlvi~iS~sG-~~-~~~~-~~~-------~~ak~~g~~vi~IT~~~~s~l~~~ad~~i~~~~~~~  157 (336)
                      -|++|++...- .+ +... +..       +.++++|++++.|-. ..++.+..||..+.+..+.+
T Consensus       132 ad~il~~G~n~~~~~p~~~~~~~~~~~~~~~~~~~~g~kli~idp-~~t~ta~~Ad~~l~i~pgtd  196 (415)
T cd02761         132 ADVIVYWGTNPMHAHPRHMSRYSVFPRGFFREGGREDRTLIVVDP-RKSDTAKLADIHLQIDPGSD  196 (415)
T ss_pred             CCEEEEEcCCccccccHHhhhhhhhhhhhccccCCCCCEEEEEcC-CCcchhhhcceEEecCCCCc
Confidence            78888885432 22 2222 211       122357899998854 57777899999998876655

Formylmethanofuran dehydrogenase catalyzes the first step in methane formation from CO2 in methanogenic archaea and some eubacteria. Members of this CD belong to the molybdopterin_binding (MopB) superfamily of proteins.

>KOG0832 consensus Mitochondrial/chloroplast ribosomal protein S2 [Translation, ribosomal structure and biogenesis]

Probab=86.11  E-value=20  Score=30.45  Aligned_cols=68  Identities=15%  Similarity=0.206  Sum_probs=47.5

Q ss_pred             CcEEEEEeCCCCcHHHHHHHHHHHHcCCeEEEEeCCCCCccccccCEEEEcCCCcccCCCCCCChhHHHHHHHHHHHHHH
Q 019775          102 DDILVMFSKSGNTEELLKVVPCAKAKGAYLVSVTSVEGNALAAVCDMNVHLPVERELCPFDLAPVTSTAIQMVFGDTVAI  181 (336)
Q Consensus       102 ~dlvi~iS~sG~~~~~~~~~~~ak~~g~~vi~IT~~~~s~l~~~ad~~i~~~~~~~~~~~~~~~~~s~~~~~~l~d~l~~  181 (336)
                      .|+++++..-.+...+++    |-+.++++|+|-+....|    +-+.+.+|+..+          |..+..+++.++..
T Consensus       174 ~D~vvvln~~e~~sAilE----A~K~~IPTIgIVDtN~~P----~liTYpVPaNDD----------s~~sv~f~~~l~k~  235 (251)
T KOG0832|consen  174 PDLVVVLNPEENHSAILE----AAKMAIPTIGIVDTNCNP----ELITYPVPANDD----------SPASVEFILNLLKR  235 (251)
T ss_pred             cceeEecCcccccHHHHH----HHHhCCCeEEEecCCCCc----cceeeccCCCCC----------cHHHHHHHHHHHHH
Confidence            388888877766665554    445689999999875544    334555677655          66777888888877


Q ss_pred             HHHhhc
Q 019775          182 AMMGAR  187 (336)
Q Consensus       182 ~~~~~~  187 (336)
                      .+.+..
T Consensus       236 ai~~g~  241 (251)
T KOG0832|consen  236 AIARGK  241 (251)
T ss_pred             HHHHHH
Confidence            777664

>TIGR01706 NAPA periplasmic nitrate reductase, large subunit

Probab=86.04  E-value=12  Score=38.79  Aligned_cols=83  Identities=10%  Similarity=0.187  Sum_probs=50.4

Q ss_pred             CCCCcEEEEEeCCCCcHH--HHHHHHHHH--HcCCeEEEEeCCCCCccccccCEEEEcCCCcccCCCCCCChhHHHHHHH
Q 019775           99 LSSDDILVMFSKSGNTEE--LLKVVPCAK--AKGAYLVSVTSVEGNALAAVCDMNVHLPVERELCPFDLAPVTSTAIQMV  174 (336)
Q Consensus        99 ~~~~dlvi~iS~sG~~~~--~~~~~~~ak--~~g~~vi~IT~~~~s~l~~~ad~~i~~~~~~~~~~~~~~~~~s~~~~~~  174 (336)
                      +...|++|++........  ...-+..++  ++|+++|+|-. ..++.+..||..+.+..+++               .+
T Consensus       204 i~~ad~il~~G~Np~~~~p~~~~~i~~a~~~~~GakliviDP-r~t~ta~~Ad~~l~irPGTD---------------~A  267 (830)
T TIGR01706       204 FEAADAFVLWGSNMAEMHPILWTRVTDRRLSHPKVKVVVLST-FTHRSFDLADIGIIFKPQTD---------------LA  267 (830)
T ss_pred             HhhCCEEEEEcCCcchhCCHHHHHHHHHHhccCCCEEEEECC-CCCchhHHhCeeeccCCCCH---------------HH
Confidence            355689888866543221  112222233  47999999975 46677789999998877766               45


Q ss_pred             HHHHHHHHHHhhcCCChHHHhhcC
Q 019775          175 FGDTVAIAMMGARNLTRDEYAANH  198 (336)
Q Consensus       175 l~d~l~~~~~~~~~~~~~~~~~~~  198 (336)
                      |+..++..++.+...+ ++|.+.+
T Consensus       268 L~lam~~~ii~~~~~D-~~Fv~~~  290 (830)
T TIGR01706       268 ILNYIANYIIQNNAVN-MDFVNKH  290 (830)
T ss_pred             HHHHHHHHHHHCCCcc-HHHHHHH
Confidence            5555555555554333 3454443

The enzymes from Alicagenes eutrophus and Paracoccus pantotrophus have been characterized. In E. coli (as well as other organisms) this gene is part of a large nitrate reduction operon (napFDAGHBC).

>smart00642 Aamy Alpha-amylase domain

Probab=85.95  E-value=3.2  Score=33.70  Aligned_cols=78  Identities=19%  Similarity=0.244  Sum_probs=50.3

Q ss_pred             cchHHHHHHHHHHHHhcCCeeeecCCcccccc---ccCCCCCCcEEEEEeCCCCcHHHHHHHHHHHHcCCeEE-EEeCCC
Q 019775           63 GKSGFVANKISQTLISLGIKSGFLNPLDALHG---DIGILSSDDILVMFSKSGNTEELLKVVPCAKAKGAYLV-SVTSVE  138 (336)
Q Consensus        63 G~s~~~a~~~~~~l~~~g~~~~~~~~~~~~~~---~~~~~~~~dlvi~iS~sG~~~~~~~~~~~ak~~g~~vi-~IT~~~  138 (336)
                      |.=..+++.+- .|..+|++.+.+++......   ........|..-+=+.-|...+..++++.|+++|++++ =+.-|.
T Consensus        16 G~~~gi~~~l~-yl~~lG~~~I~l~Pi~~~~~~~~~~~gY~~~d~~~i~~~~Gt~~d~~~lv~~~h~~Gi~vilD~V~NH   94 (166)
T smart00642       16 GDLQGIIEKLD-YLKDLGVTAIWLSPIFESPQGYPSYHGYDISDYKQIDPRFGTMEDFKELVDAAHARGIKVILDVVINH   94 (166)
T ss_pred             cCHHHHHHHHH-HHHHCCCCEEEECcceeCCCCCCCCCCcCccccCCCCcccCCHHHHHHHHHHHHHCCCEEEEEECCCC
Confidence            33446666665 89999999998887544332   11112233332233355888999999999999999987 344444


Q ss_pred             CCc
Q 019775          139 GNA  141 (336)
Q Consensus       139 ~s~  141 (336)
                      .+.
T Consensus        95 ~~~   97 (166)
T smart00642       95 TSD   97 (166)
T ss_pred             CCC
Confidence            444

>TIGR02166 dmsA_ynfE anaerobic dimethyl sulfoxide reductase, A subunit, DmsA/YnfE family

Probab=85.75  E-value=5.5  Score=41.06  Aligned_cols=59  Identities=10%  Similarity=0.185  Sum_probs=40.2

Q ss_pred             CCCCcEEEEEeCCCCcH------HHHHHHHHHHHcCCeEEEEeCCCCCccccccCEEEEcCCCcc
Q 019775           99 LSSDDILVMFSKSGNTE------ELLKVVPCAKAKGAYLVSVTSVEGNALAAVCDMNVHLPVERE  157 (336)
Q Consensus        99 ~~~~dlvi~iS~sG~~~------~~~~~~~~ak~~g~~vi~IT~~~~s~l~~~ad~~i~~~~~~~  157 (336)
                      +..-|++|++.......      .....++.++++|+++|+|-.......+..||..+.+..+++
T Consensus       212 ~~~a~~il~~G~N~~~s~~~~~~~~~~~~~~~~~~G~kiivvDPr~t~taa~~Ad~~l~irPGtD  276 (797)
T TIGR02166       212 IENSKLVVMFGNNPAETRMSGGGQTYYFLQALEKSNARVIVIDPRYTDTVAGREDEWIPIRPGTD  276 (797)
T ss_pred             HHhCCEEEEECCCHHHhcCCCcchHHHHHHHHHHCCCeEEEECCCCCccchhcCCEEECCCCCCH
Confidence            34568888885543222      234556666789999999977654444468999998877766

Members of this family include known and probable dimethyl sulfoxide reductase (DMSO reductase) A chains. In E. coli, dmsA encodes the canonical anaerobic DMSO reductase A chain. The paralog ynfE, as part of ynfFGH expressed from a multicopy plasmid, could complement a dmsABC deletion, suggesting a similar function and some overlap in specificity, although YnfE could not substitute for DmsA in a mixed complex.

>cd01410 SIRT7 SIRT7: Eukaryotic and prokaryotic group (class4) which includes human sirtuin SIRT6, SIRT7, and several bacterial homologs; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation

Probab=84.55  E-value=2.8  Score=35.32  Aligned_cols=53  Identities=17%  Similarity=0.192  Sum_probs=45.3

Q ss_pred             CCCCCcEEEEEeCCCCcHHHHHHHHHHHHcCCeEEEEeCCCCCccccccCEEEE
Q 019775           98 ILSSDDILVMFSKSGNTEELLKVVPCAKAKGAYLVSVTSVEGNALAAVCDMNVH  151 (336)
Q Consensus        98 ~~~~~dlvi~iS~sG~~~~~~~~~~~ak~~g~~vi~IT~~~~s~l~~~ad~~i~  151 (336)
                      .+.+-|++|++-.|....-...++..++++|++++.|-. ..++....+|++|.
T Consensus       152 ~~~~aDlllviGTSl~V~pa~~l~~~~~~~g~~vi~iN~-~~~~~d~~~d~~~~  204 (206)
T cd01410         152 AACRADLFLCLGTSLQVTPAANLPLKAARAGGRLVIVNL-QPTPKDKLADLVIH  204 (206)
T ss_pred             HHhcCCEEEEECcCceehhHHHHHHHHHhcCCeEEEECC-CCCCCCccccEEEe
Confidence            355779999999999999999999999999999997765 57788888888775

Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span.

>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]

Probab=84.10  E-value=2.5  Score=37.86  Aligned_cols=47  Identities=17%  Similarity=0.299  Sum_probs=40.3

Q ss_pred             CccccCCCcHHHHHHHHHhcCcceEEEEcCCCcEEEEeeHHHHHHHHH
Q 019775          221 LPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRRTLK  268 (336)
Q Consensus       221 ~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~it~~dl~~~~~  268 (336)
                      +..+..+.++.+.+..+.+.. .-+||+|++++++|++++..++..+.
T Consensus       337 ~~~v~~d~~~~~~~~~~~~~~-~p~aVvde~~r~vG~i~~~~vl~aL~  383 (386)
T COG4175         337 VLTVDADTPLSEILARIRQAP-CPVAVVDEDGRYVGIISRGELLEALA  383 (386)
T ss_pred             ccccCccchHHHHHHHHhcCC-CceeEEcCCCcEEEEecHHHHHHHHh
Confidence            457888999999888888765 36899999999999999999998775

>PF08484 Methyltransf_14: C-methyltransferase C-terminal domain; InterPro: IPR013691 This domain is found in bacterial C-methyltransferase proteins, often together with other methyltransferase domains such as IPR013216 from INTERPRO or IPR013217 from INTERPRO

Probab=83.95  E-value=6.1  Score=31.84  Aligned_cols=92  Identities=12%  Similarity=0.069  Sum_probs=41.9

Q ss_pred             hHHHHHHHHHHcCCCeEEEEeccchHHH-HHHHHHHHHhcCCee--------eecCCccc-cccccC-CCCCCcEEEEEe
Q 019775           41 PHTLTFTQTLLKCRGTIFFTGVGKSGFV-ANKISQTLISLGIKS--------GFLNPLDA-LHGDIG-ILSSDDILVMFS  109 (336)
Q Consensus        41 ~~i~~~~~~i~~a~~~I~i~G~G~s~~~-a~~~~~~l~~~g~~~--------~~~~~~~~-~~~~~~-~~~~~dlvi~iS  109 (336)
                      +.+.++++.+...+++|++||.|.-... ..++-..=..+..-+        .+.+.... +...-. .-.+.|.+|+ .
T Consensus        55 ~~l~~~L~~~~~~gk~I~~yGA~~kg~tlln~~g~~~~~I~~vvD~np~K~G~~~PGt~ipI~~p~~l~~~~pd~viv-l  133 (160)
T PF08484_consen   55 AELREFLEKLKAEGKRIAGYGAGAKGNTLLNYFGLDNDLIDYVVDDNPLKQGKYLPGTHIPIVSPEELKERKPDYVIV-L  133 (160)
T ss_dssp             HHHHHHHHHHHHTT--EEEE---SHHHHHHHHHT--TTTS--EEES-GGGTTEE-TTT--EEEEGGG--SS--SEEEE-S
T ss_pred             HHHHHHHHHHHHcCCEEEEECcchHHHHHHHHhCCCcceeEEEEeCChhhcCcccCCCCCeECCHHHHhhCCCCEEEE-c
Confidence            4455565555555468999999886643 333221101111000        01111110 111111 1223576655 5


Q ss_pred             CCCCcHHHHHHHHHHHHcCCeEEE
Q 019775          110 KSGNTEELLKVVPCAKAKGAYLVS  133 (336)
Q Consensus       110 ~sG~~~~~~~~~~~ak~~g~~vi~  133 (336)
                      ...+..++.+.++...++|.+.|.
T Consensus       134 aw~y~~EI~~~~~~~~~~gg~fi~  157 (160)
T PF08484_consen  134 AWNYKDEIIEKLREYLERGGKFIV  157 (160)
T ss_dssp             -GGGHHHHHHHTHHHHHTT-EEEE
T ss_pred             ChhhHHHHHHHHHHHHhcCCEEEE
Confidence            588899999999999999999875

; PDB: 4E2X_A 3NDJ_A 3NDI_A 4E32_A 4E33_A 4E31_A 4E2Y_A 4E2W_A 4E2Z_A 4E30_A.

>cd01409 SIRT4 SIRT4: Eukaryotic and prokaryotic group (class2) which includes human sirtuin SIRT4 and several bacterial homologs; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation

Probab=83.89  E-value=2.6  Score=37.02  Aligned_cols=57  Identities=16%  Similarity=0.111  Sum_probs=48.7

Q ss_pred             CCCCCcEEEEEeCCCCcHHHHHHHHHHHHcCCeEEEEeCCCCCccccccCEEEEcCCC
Q 019775           98 ILSSDDILVMFSKSGNTEELLKVVPCAKAKGAYLVSVTSVEGNALAAVCDMNVHLPVE  155 (336)
Q Consensus        98 ~~~~~dlvi~iS~sG~~~~~~~~~~~ak~~g~~vi~IT~~~~s~l~~~ad~~i~~~~~  155 (336)
                      .+.+-|++|++-.|....-...+++.++++|+++|.|-. ..+++...+|+.|.-+.+
T Consensus       201 ~~~~aDlllviGTSl~V~pa~~l~~~a~~~g~~viiIN~-~~t~~d~~a~~~i~~~~~  257 (260)
T cd01409         201 RLAEADALLVLGSSLMVYSGYRFVLAAAEAGLPIAIVNI-GPTRADHLATLKVDARCG  257 (260)
T ss_pred             HHhcCCEEEEeCcCceecchhhHHHHHHHCCCcEEEEcC-CCCCCCccccEEEeCChh
Confidence            356679999999999999989999999999999998875 578888889988876554

Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span.

>cd02757 MopB_Arsenate-R This CD includes the respiratory arsenate reductase, As(V), catalytic subunit (ArrA) and other related proteins

Probab=83.64  E-value=18  Score=35.35  Aligned_cols=59  Identities=14%  Similarity=0.093  Sum_probs=40.0

Q ss_pred             CCCCCcEEEEEeCCC-CcH-HH--HHHHHHHHHcCCeEEEEeCCCCCccccccCEEEEcCCCcc
Q 019775           98 ILSSDDILVMFSKSG-NTE-EL--LKVVPCAKAKGAYLVSVTSVEGNALAAVCDMNVHLPVERE  157 (336)
Q Consensus        98 ~~~~~dlvi~iS~sG-~~~-~~--~~~~~~ak~~g~~vi~IT~~~~s~l~~~ad~~i~~~~~~~  157 (336)
                      .+..-|++|++.... .+. .+  ..-+..++++|+++|+|-.. .+..+..||..|.+..+++
T Consensus       159 D~~~a~~Il~~G~n~~~t~~~~~~~~~~~~a~~~gakliviDPr-~s~ta~~AD~~l~i~PGtD  221 (523)
T cd02757         159 DYANAKYILFFGADPLESNRQNPHAQRIWGGKMDQAKVVVVDPR-LSNTAAKADEWLPIKPGED  221 (523)
T ss_pred             chhcCcEEEEECCChHHhCCCcHHHHHHHHHHHCCCEEEEECCC-CChhhHhcCEeeCCCCCcH
Confidence            345668888887543 211 11  13344568899999999765 5666778999998877666

These members belong to the molybdopterin_binding (MopB) superfamily of proteins.

>cd01413 SIR2_Af2 SIR2_Af2: Archaeal and prokaryotic group which includes Archaeoglobus fulgidus Sir2-Af2, Sulfolobus solfataricus ssSir2, and several bacterial homologs; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation

Probab=83.46  E-value=2.8  Score=35.84  Aligned_cols=53  Identities=19%  Similarity=0.233  Sum_probs=44.6

Q ss_pred             CCCCCcEEEEEeCCCCcHHHHHHHHHHHHcCCeEEEEeCCCCCccccccCEEEE
Q 019775           98 ILSSDDILVMFSKSGNTEELLKVVPCAKAKGAYLVSVTSVEGNALAAVCDMNVH  151 (336)
Q Consensus        98 ~~~~~dlvi~iS~sG~~~~~~~~~~~ak~~g~~vi~IT~~~~s~l~~~ad~~i~  151 (336)
                      .+.+-|++|++-.|+...-...+++.++++|+++|.|-- ..++....+|+.|.
T Consensus       168 ~~~~~Dl~lvvGTSl~V~p~~~l~~~a~~~g~~~i~iN~-~~~~~~~~~~~~i~  220 (222)
T cd01413         168 AAKEADLFIVLGSSLVVYPANLLPLIAKENGAKLVIVNA-DETPFDYIADLVIQ  220 (222)
T ss_pred             HHhcCCEEEEEccCCEeccHhHHHHHHHHcCCeEEEEcC-CCCCCCcceeEEEe
Confidence            356779999999999999999999999999999987764 46788888888764

Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span. The Sir2 homolog from the archaea Sulfolobus solftaricus deacetylates the non-specific DNA protein Alba to mediate transcription repression.

>TIGR01973 NuoG NADH-quinone oxidoreductase, chain G

Probab=82.27  E-value=14  Score=36.68  Aligned_cols=120  Identities=16%  Similarity=0.033  Sum_probs=66.4

Q ss_pred             hcCCh-hHHHHHHHHHHcCCCeEEEEeccchHHHHHHHHHHH-HhcCCeeeecCCc-------cc----cc-cccCCCCC
Q 019775           36 QHLSL-PHTLTFTQTLLKCRGTIFFTGVGKSGFVANKISQTL-ISLGIKSGFLNPL-------DA----LH-GDIGILSS  101 (336)
Q Consensus        36 ~~~~~-~~i~~~~~~i~~a~~~I~i~G~G~s~~~a~~~~~~l-~~~g~~~~~~~~~-------~~----~~-~~~~~~~~  101 (336)
                      +.++. +.++.+++.+.+. +++.+++.+....-..++..+| ..+|-+-+.....       ..    .. .....+..
T Consensus       284 ~~isWdeAl~~ia~kL~~i-~~va~~~~~~~~~e~~~~~~~~~~~lGt~~~~~~~~~~~~~~~~~~~~~~~g~~~~di~~  362 (603)
T TIGR01973       284 LEVSWAEALAIAAEKLKAS-SRIGGIAGPRSSLEELFALKKLVRKLGSENFDLRIRNYEFESADLRANYLFNTTLADIEE  362 (603)
T ss_pred             EEcCHHHHHHHHHHHHhcc-CcEEEEeCCCCCHHHHHHHHHHHHHhCCCcccccccccccccchhhcccccCCCHHHHHh
Confidence            34443 5577777777776 4788887665443333333343 3445332211110       00    00 11222456


Q ss_pred             CcEEEEEeCCC-Cc-HHHHHHHHHHHHcC-CeEEEEeCCCCCccccccCEEEEcCCCcc
Q 019775          102 DDILVMFSKSG-NT-EELLKVVPCAKAKG-AYLVSVTSVEGNALAAVCDMNVHLPVERE  157 (336)
Q Consensus       102 ~dlvi~iS~sG-~~-~~~~~~~~~ak~~g-~~vi~IT~~~~s~l~~~ad~~i~~~~~~~  157 (336)
                      -|++|++...- .+ +-...-++.++++| +++|.|-. ..+..+..||..+.+..+.+
T Consensus       363 ad~il~~G~N~~~s~p~~~~~i~~a~~~ggaklividp-r~s~ta~~Ad~~l~i~Pgtd  420 (603)
T TIGR01973       363 ADLVLLVGADLRQEAPLLNLRLRKAVKKGGAKVALIGI-EKWNLTYPANTNLVFHPGLS  420 (603)
T ss_pred             CCEEEEEccCchhhhHHHHHHHHHHHhcCCcEEEEECC-ccccchhhhccceeecCCcc
Confidence            78888886543 33 22333455666666 88888875 46778899999887755544

This model represents the G subunit (one of 14: A-N) of the NADH-quinone oxidoreductase complex I which generally couples NADH and ubiquinone oxidation/reduction in bacteria and mammalian mitochondria while translocating protons, but may act on NADPH and/or plastoquinone in cyanobacteria and plant chloroplasts. This model excludes related subunits from formate dehydrogenase complexes.

>PRK07199 phosphoribosylpyrophosphate synthetase; Provisional

Probab=81.63  E-value=10  Score=34.08  Aligned_cols=80  Identities=14%  Similarity=0.086  Sum_probs=55.8

Q ss_pred             EEEEeccchHHHHHHHHHHHHhc--CCeeeecCCccccccccCCCCCCcEEEEEeCCCCcHHHHH---HHHHHHHcCCe-
Q 019775           57 IFFTGVGKSGFVANKISQTLISL--GIKSGFLNPLDALHGDIGILSSDDILVMFSKSGNTEELLK---VVPCAKAKGAY-  130 (336)
Q Consensus        57 I~i~G~G~s~~~a~~~~~~l~~~--g~~~~~~~~~~~~~~~~~~~~~~dlvi~iS~sG~~~~~~~---~~~~ak~~g~~-  130 (336)
                      ..+++...|..+|..++..|.--  .....-+++++...........+|++|+-|.++.+..+.+   ++..+|+.|++ 
T Consensus         3 ~~i~~~~~~~~la~~ia~~lg~~~~~~~~~~F~dGE~~v~i~~~v~g~~V~ivqs~~~~n~~l~elll~~~alr~~~a~~   82 (301)
T PRK07199          3 PLLLALPGNEAAAGRLAAALGVEVGRIELHRFPDGESYVRLDSPVAGRTVVLVCSLDRPDEKLLPLLFAAEAARELGARR   82 (301)
T ss_pred             eEEEECCCCHHHHHHHHHHhCCceeeeEEEECCCCCEEEEECCCCCCCEEEEECCCCCCcHHHHHHHHHHHHHHHcCCCe
Confidence            45777777888999999988632  3333446677776666566777899999998765554444   46788999986 


Q ss_pred             EEEEeC
Q 019775          131 LVSVTS  136 (336)
Q Consensus       131 vi~IT~  136 (336)
                      +.+|..
T Consensus        83 i~~ViP   88 (301)
T PRK07199         83 VGLVAP   88 (301)
T ss_pred             EEEEee
Confidence            556654

>PRK00553 ribose-phosphate pyrophosphokinase; Provisional

Probab=81.22  E-value=9.3  Score=34.83  Aligned_cols=82  Identities=11%  Similarity=0.103  Sum_probs=58.7

Q ss_pred             CeEEEEeccchHHHHHHHHHHHHhc--CCeeeecCCccccccccCCCCCCcEEEEEeCCCC-cHHHH---HHHHHHHHcC
Q 019775           55 GTIFFTGVGKSGFVANKISQTLISL--GIKSGFLNPLDALHGDIGILSSDDILVMFSKSGN-TEELL---KVVPCAKAKG  128 (336)
Q Consensus        55 ~~I~i~G~G~s~~~a~~~~~~l~~~--g~~~~~~~~~~~~~~~~~~~~~~dlvi~iS~sG~-~~~~~---~~~~~ak~~g  128 (336)
                      +++.+++...+..+|+.++..|..-  .....-+++++........+..+|++|+-|.++. +..+.   -++..+|+.|
T Consensus         8 ~~~~i~~~~~~~~La~~ia~~lg~~l~~~~~~~FpdGE~~v~i~~~vrg~dV~ivqs~~~p~nd~l~eLll~~~alr~~~   87 (332)
T PRK00553          8 SNHVIFSLSKAKKLVDSICRKLSMKPGEIVIQKFADGETYIRFDESVRNKDVVIFQSTCSPVNDSLMELLIAIDALKRGS   87 (332)
T ss_pred             CCeEEEECCCCHHHHHHHHHHhCCceeeeEEEECCCCCEEEEECCCCCCCEEEEEcCCCCCCchHHHHHHHHHHHHHHcC
Confidence            3677888888889999999988732  3344456677776666677778899999998764 44444   4467888899


Q ss_pred             Ce-EEEEeC
Q 019775          129 AY-LVSVTS  136 (336)
Q Consensus       129 ~~-vi~IT~  136 (336)
                      ++ +.+|..
T Consensus        88 a~~i~~ViP   96 (332)
T PRK00553         88 AKSITAILP   96 (332)
T ss_pred             CCeEEEEee
Confidence            86 556654

>PRK14138 NAD-dependent deacetylase; Provisional

Probab=81.15  E-value=2.8  Score=36.37  Aligned_cols=57  Identities=14%  Similarity=0.164  Sum_probs=48.6

Q ss_pred             CCCCCcEEEEEeCCCCcHHHHHHHHHHHHcCCeEEEEeCCCCCccccccCEEEEcCCC
Q 019775           98 ILSSDDILVMFSKSGNTEELLKVVPCAKAKGAYLVSVTSVEGNALAAVCDMNVHLPVE  155 (336)
Q Consensus        98 ~~~~~dlvi~iS~sG~~~~~~~~~~~ak~~g~~vi~IT~~~~s~l~~~ad~~i~~~~~  155 (336)
                      .+.+-|++|++-.|....-...+...++.+|++++.|.. ...++...+|+.+....+
T Consensus       175 ~~~~aDl~lviGTSl~V~pa~~l~~~~~~~g~~~i~iN~-~~t~~d~~~~~~i~~~~~  231 (244)
T PRK14138        175 LSSKASLMIVMGSSLVVYPAAELPLITVRSGGKLVIVNL-GETPLDDIATLKYNMDVV  231 (244)
T ss_pred             HHhcCCEEEEeCcCCeeecHhHHHHHHHHcCCeEEEEcC-CCCCCCcceeEEEeCCHH
Confidence            356779999999999999999999999999999997775 577888889988887654

>PRK09271 flavodoxin; Provisional

Probab=81.08  E-value=22  Score=28.49  Aligned_cols=70  Identities=14%  Similarity=0.148  Sum_probs=44.5

Q ss_pred             EEEEe--ccchHHHHHHHHHHHHhcCCeeeecC-CccccccccCCCCCCcEEEEEeC---CCCcH-HHHHHHHHHHH
Q 019775           57 IFFTG--VGKSGFVANKISQTLISLGIKSGFLN-PLDALHGDIGILSSDDILVMFSK---SGNTE-ELLKVVPCAKA  126 (336)
Q Consensus        57 I~i~G--~G~s~~~a~~~~~~l~~~g~~~~~~~-~~~~~~~~~~~~~~~dlvi~iS~---sG~~~-~~~~~~~~ak~  126 (336)
                      +.+||  .|.+..+|+.++..|...|..+.... +..........+.+-|++++.|.   .|..+ ++...++.+++
T Consensus         4 ~IvY~S~tGnTe~~A~~ia~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~d~vilgt~T~~~G~~p~~~~~f~~~l~~   80 (160)
T PRK09271          4 LLAYASLSGNTREVAREIEERCEEAGHEVDWVETDVQTLAEYPLDPEDYDLYLLGTWTDNAGRTPPEMKRFIAELAE   80 (160)
T ss_pred             EEEEEcCCchHHHHHHHHHHHHHhCCCeeEEEecccccccccccCcccCCEEEEECcccCCCcCCHHHHHHHHHHHH
Confidence            44555  47889999999999999998875443 11111111223345577777763   36655 58888877766

>PRK02458 ribose-phosphate pyrophosphokinase; Provisional

Probab=80.87  E-value=13  Score=33.78  Aligned_cols=82  Identities=20%  Similarity=0.131  Sum_probs=57.9

Q ss_pred             CeEEEEeccchHHHHHHHHHHHHhc--CCeeeecCCccccccccCCCCCCcEEEEEeCCCC-cHH---HHHHHHHHHHcC
Q 019775           55 GTIFFTGVGKSGFVANKISQTLISL--GIKSGFLNPLDALHGDIGILSSDDILVMFSKSGN-TEE---LLKVVPCAKAKG  128 (336)
Q Consensus        55 ~~I~i~G~G~s~~~a~~~~~~l~~~--g~~~~~~~~~~~~~~~~~~~~~~dlvi~iS~sG~-~~~---~~~~~~~ak~~g  128 (336)
                      ++..+++...+..+|..++..|.-.  .....-+++++........+...|++|+-|.+.. +..   ++-++..+|+.|
T Consensus         8 ~~~~i~~~~~~~~la~~ia~~lg~~l~~~~~~~FpdGE~~v~i~~~v~g~dV~ii~s~~~~~nd~l~eLll~~~alr~~~   87 (323)
T PRK02458          8 KQIKLFSLNSNLEIAEKIAQAAGVPLGKLSSRQFSDGEIMINIEESVRGDDIYIIQSTSFPVNDHLWELLIMIDACKRAS   87 (323)
T ss_pred             CCeEEEECCCCHHHHHHHHHHhCCceeeeEEEECCCCCEEEEecCCcCCCeEEEEecCCCCCchHHHHHHHHHHHHHHcC
Confidence            4678888888889999999988732  3344456677776666666777889888887544 333   444567889999


Q ss_pred             Ce-EEEEeC
Q 019775          129 AY-LVSVTS  136 (336)
Q Consensus       129 ~~-vi~IT~  136 (336)
                      ++ +.+|..
T Consensus        88 a~~i~lViP   96 (323)
T PRK02458         88 ANTVNVVLP   96 (323)
T ss_pred             CceEEEEEe
Confidence            85 556654

>cd02760 MopB_Phenylacetyl-CoA-OR The MopB_Phenylacetyl-CoA-OR CD contains the phenylacetyl-CoA:acceptor oxidoreductase, large subunit (PadB2), and other related proteins

Probab=80.76  E-value=25  Score=36.01  Aligned_cols=58  Identities=12%  Similarity=0.060  Sum_probs=41.1

Q ss_pred             CCCCcEEEEEeCCC-Cc--HHHHHHHHHHHHcCCeEEEEeCCCCCccccccCEEEEcCCCcc
Q 019775           99 LSSDDILVMFSKSG-NT--EELLKVVPCAKAKGAYLVSVTSVEGNALAAVCDMNVHLPVERE  157 (336)
Q Consensus        99 ~~~~dlvi~iS~sG-~~--~~~~~~~~~ak~~g~~vi~IT~~~~s~l~~~ad~~i~~~~~~~  157 (336)
                      +..-+++|++.... .+  ....+.+..+|++|+++|+|-.. .++.+..||..+.+.-+++
T Consensus       171 ~~~ad~Il~~G~Np~~s~~~~~~~~~~~ar~~GaKlIvVDPr-~t~ta~~AD~wlpirPGTD  231 (760)
T cd02760         171 TPLANYVISFGSNVEASGGPCAVTRHADARVRGYKRVQVEPH-LSVTGACSAEWVPIRPKTD  231 (760)
T ss_pred             HhcCCEEEEECCCchHhcCcHHHHHHHHHHHcCCeEEEEcCC-CCcchhhcCeEeCcCCCcH
Confidence            34567888885443 22  12345567788999999999654 6777889999998876655

The phenylacetyl-CoA:acceptor oxidoreductase has been characterized as a membrane-bound molybdenum-iron-sulfur enzyme involved in anaerobic metabolism of phenylalanine in the denitrifying bacterium Thauera aromatica. Members of this CD belong to the molybdopterin_binding (MopB) superfamily of proteins.

>PRK15488 thiosulfate reductase PhsA; Provisional

Probab=80.73  E-value=33  Score=35.15  Aligned_cols=59  Identities=17%  Similarity=0.139  Sum_probs=39.6

Q ss_pred             CCCCCcEEEEEeCC-CCc-H-HHHHHHHHHH-HcCCeEEEEeCCCCCccccccCEEEEcCCCcc
Q 019775           98 ILSSDDILVMFSKS-GNT-E-ELLKVVPCAK-AKGAYLVSVTSVEGNALAAVCDMNVHLPVERE  157 (336)
Q Consensus        98 ~~~~~dlvi~iS~s-G~~-~-~~~~~~~~ak-~~g~~vi~IT~~~~s~l~~~ad~~i~~~~~~~  157 (336)
                      .+..-|++|++... ..+ + .....+..++ ++|+++|+|-. ..++.+..||..+.+..+.+
T Consensus       193 D~~~ad~Il~~G~N~~~~~~~~~~~~~~~a~~~~G~kiivIDP-r~s~ta~~Ad~~l~i~PGtD  255 (759)
T PRK15488        193 DLANSKYIINFGHNLYEGINMSDTRGLMTAQMEKGAKLVVFEP-RFSVVASKADEWHAIRPGTD  255 (759)
T ss_pred             CHhhCcEEEEeccChHhcCCcHHHHHHHHHHHhCCCEEEEECC-CCCcchhhCCeeeccCCCcH
Confidence            34556888888543 221 1 1223344455 89999999966 46778899999998877666

>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=80.49  E-value=11  Score=35.90  Aligned_cols=84  Identities=19%  Similarity=0.257  Sum_probs=49.2

Q ss_pred             hHHHHHHHHHHcCCCeEEEEeccchHHHHHHHHHHHHhcCCeeeecCCccc---------cc-----c-----ccCCCCC
Q 019775           41 PHTLTFTQTLLKCRGTIFFTGVGKSGFVANKISQTLISLGIKSGFLNPLDA---------LH-----G-----DIGILSS  101 (336)
Q Consensus        41 ~~i~~~~~~i~~a~~~I~i~G~G~s~~~a~~~~~~l~~~g~~~~~~~~~~~---------~~-----~-----~~~~~~~  101 (336)
                      .++.++...+..  ++|.++|.|.|..   .++..|...|..+........         +.     .     ....+.+
T Consensus         3 ~~~~~~~~~~~~--~~i~v~G~G~sG~---a~a~~L~~~G~~V~~~D~~~~~~~~~~~~~l~~~gi~~~~~~~~~~~~~~   77 (458)
T PRK01710          3 RDFNEFKKFIKN--KKVAVVGIGVSNI---PLIKFLVKLGAKVTAFDKKSEEELGEVSNELKELGVKLVLGENYLDKLDG   77 (458)
T ss_pred             chHHHHhhhhcC--CeEEEEcccHHHH---HHHHHHHHCCCEEEEECCCCCccchHHHHHHHhCCCEEEeCCCChHHhcc
Confidence            346666666664  3899999999885   334557788888777652210         00     0     0011234


Q ss_pred             CcEEEEEeCCCCcHHHHHHHHHHHHcCCeEE
Q 019775          102 DDILVMFSKSGNTEELLKVVPCAKAKGAYLV  132 (336)
Q Consensus       102 ~dlvi~iS~sG~~~~~~~~~~~ak~~g~~vi  132 (336)
                      -|+ |+.| +|-... ...++.|+++|++++
T Consensus        78 ~dl-VV~S-pgi~~~-~p~~~~a~~~~i~i~  105 (458)
T PRK01710         78 FDV-IFKT-PSMRID-SPELVKAKEEGAYIT  105 (458)
T ss_pred             CCE-EEEC-CCCCCC-chHHHHHHHcCCcEE
Confidence            454 4555 555432 345667777887775

>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG

Probab=80.25  E-value=26  Score=30.94  Aligned_cols=99  Identities=17%  Similarity=0.162  Sum_probs=61.3

Q ss_pred             HHHHHHHcCCCeEEEEeccchHHHHHHHHHHHHhcCCeeeecCCccc-------cccccCCCCCCcEEEEEeCCCCcHHH
Q 019775           45 TFTQTLLKCRGTIFFTGVGKSGFVANKISQTLISLGIKSGFLNPLDA-------LHGDIGILSSDDILVMFSKSGNTEEL  117 (336)
Q Consensus        45 ~~~~~i~~a~~~I~i~G~G~s~~~a~~~~~~l~~~g~~~~~~~~~~~-------~~~~~~~~~~~dlvi~iS~sG~~~~~  117 (336)
                      .+++.+.+.+..+.|+....+...    ...+...|.+++.+++...       +...+... +.|++| +...+-+.+.
T Consensus        22 ~LA~~l~~~g~~v~f~~~~~~~~~----~~~i~~~g~~v~~~~~~~~~~~d~~~~~~~l~~~-~~d~vV-~D~y~~~~~~   95 (279)
T TIGR03590        22 TLARALHAQGAEVAFACKPLPGDL----IDLLLSAGFPVYELPDESSRYDDALELINLLEEE-KFDILI-VDHYGLDADW   95 (279)
T ss_pred             HHHHHHHHCCCEEEEEeCCCCHHH----HHHHHHcCCeEEEecCCCchhhhHHHHHHHHHhc-CCCEEE-EcCCCCCHHH
Confidence            455555443358888887765543    3466788999988865331       22222222 235544 4444555554


Q ss_pred             HHHHHHHHHcCCeEEEEeCCCCCccccccCEEEEcCC
Q 019775          118 LKVVPCAKAKGAYLVSVTSVEGNALAAVCDMNVHLPV  154 (336)
Q Consensus       118 ~~~~~~ak~~g~~vi~IT~~~~s~l~~~ad~~i~~~~  154 (336)
                      .   +..|..+++++.|++....+.  .||++|...-
T Consensus        96 ~---~~~k~~~~~l~~iDD~~~~~~--~~D~vin~~~  127 (279)
T TIGR03590        96 E---KLIKEFGRKILVIDDLADRPH--DCDLLLDQNL  127 (279)
T ss_pred             H---HHHHHhCCeEEEEecCCCCCc--CCCEEEeCCC
Confidence            4   445567999999999766655  8999987643

This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.

>TIGR01754 flav_RNR ribonucleotide reductase-associated flavodoxin, putative

Probab=80.13  E-value=16  Score=28.42  Aligned_cols=75  Identities=17%  Similarity=0.097  Sum_probs=43.7

Q ss_pred             EEEEe--ccchHHHHHHHHHHHHhcCCeeeecCCccccccccCCCCCCcEEEEEeC---CCCcH-HHHHHHHHHHHcCCe
Q 019775           57 IFFTG--VGKSGFVANKISQTLISLGIKSGFLNPLDALHGDIGILSSDDILVMFSK---SGNTE-ELLKVVPCAKAKGAY  130 (336)
Q Consensus        57 I~i~G--~G~s~~~a~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~dlvi~iS~---sG~~~-~~~~~~~~ak~~g~~  130 (336)
                      ..+|+  .|.+..+|+.++..+...|..+..+.+..........+.+-|++++.|-   .|..+ .+...++....+|-+
T Consensus         4 ~IiY~S~tGnTe~iA~~ia~~l~~~g~~v~~~~~~~~~~~~~~~~~~~d~iilgs~t~~~g~~p~~~~~fl~~l~~~~k~   83 (140)
T TIGR01754         4 LLAYLSLSGNTEEVAFMIQDYLQKDGHEVDILHRIGTLADAPLDPENYDLVFLGTWTWERGRTPDEMKDFIAELGYKPSN   83 (140)
T ss_pred             EEEEECCCChHHHHHHHHHHHHhhCCeeEEecccccccccCcCChhhCCEEEEEcCeeCCCcCCHHHHHHHHHhcccCCE
Confidence            34444  4888999999999998888876522221111111112334566666653   44444 677777777655433


Q ss_pred             E
Q 019775          131 L  131 (336)
Q Consensus       131 v  131 (336)
                      +
T Consensus        84 ~   84 (140)
T TIGR01754        84 V   84 (140)
T ss_pred             E
Confidence            3

This model represents a family of proteins found immediately downstream of ribonucleotide reductase genes in Xyella fastidiosa and some Gram-positive bacteria. It appears to be a highly divergent flavodoxin of the short chain type, more like the flavodoxins of the sulfate-reducing genus Desulfovibrio than like the NifF flavodoxins associated with nitrogen fixation.

>COG1832 Predicted CoA-binding protein [General function prediction only]

Probab=80.10  E-value=22  Score=27.70  Aligned_cols=87  Identities=22%  Similarity=0.238  Sum_probs=58.0

Q ss_pred             HHHHHHHHHcCCCeEEEEeccc-hHHHHHHHHHHHHhcCCeeeecCCcc---ccccc-----cCCC-CCCcEEEEEeCCC
Q 019775           43 TLTFTQTLLKCRGTIFFTGVGK-SGFVANKISQTLISLGIKSGFLNPLD---ALHGD-----IGIL-SSDDILVMFSKSG  112 (336)
Q Consensus        43 i~~~~~~i~~a~~~I~i~G~G~-s~~~a~~~~~~l~~~g~~~~~~~~~~---~~~~~-----~~~~-~~~dlvi~iS~sG  112 (336)
                      -+.+.+.+.++ ++|-++|... -.-.+......|...|+.++.+++..   ++...     +..+ .+=|++-+|=   
T Consensus         6 ~~~i~~iL~~~-K~IAvVG~S~~P~r~sy~V~kyL~~~GY~ViPVNP~~~~~eiLG~k~y~sL~dIpe~IDiVdvFR---   81 (140)
T COG1832           6 EEDIAEILKSA-KTIAVVGASDKPDRPSYRVAKYLQQKGYRVIPVNPKLAGEEILGEKVYPSLADIPEPIDIVDVFR---   81 (140)
T ss_pred             HHHHHHHHHhC-ceEEEEecCCCCCccHHHHHHHHHHCCCEEEeeCcccchHHhcCchhhhcHHhCCCCCcEEEEec---
Confidence            35566777889 5999999853 23555666667788999999999722   22221     1112 3458887774   


Q ss_pred             CcHHHHHHHHHHHHcCCeEEE
Q 019775          113 NTEELLKVVPCAKAKGAYLVS  133 (336)
Q Consensus       113 ~~~~~~~~~~~ak~~g~~vi~  133 (336)
                      .++.+.+.++.+-+.|++++=
T Consensus        82 ~~e~~~~i~~eal~~~~kv~W  102 (140)
T COG1832          82 RSEAAPEVAREALEKGAKVVW  102 (140)
T ss_pred             ChhhhHHHHHHHHhhCCCeEE
Confidence            455666777888888887763

>PTZ00409 Sir2 (Silent Information Regulator) protein; Provisional

Probab=80.07  E-value=4.3  Score=35.84  Aligned_cols=57  Identities=16%  Similarity=0.191  Sum_probs=46.8

Q ss_pred             CCCCCcEEEEEeCCCCcHHHHHHHHHHHHcCCeEEEEeCCCCCccc-cccCEEEEcCCC
Q 019775           98 ILSSDDILVMFSKSGNTEELLKVVPCAKAKGAYLVSVTSVEGNALA-AVCDMNVHLPVE  155 (336)
Q Consensus        98 ~~~~~dlvi~iS~sG~~~~~~~~~~~ak~~g~~vi~IT~~~~s~l~-~~ad~~i~~~~~  155 (336)
                      .+.+-|++|++-.|+...-...+.+.++++|+++|.|... .+++. ..+|+.|.-+.+
T Consensus       196 ~~~~aDlllviGTSl~V~pa~~l~~~a~~~g~~vi~IN~~-~t~~~~~~~d~~i~~~~~  253 (271)
T PTZ00409        196 EIDKCDLLLVVGTSSSVSTATNLCYRAHRKKKKIVEVNIS-KTYITNRISDYHVRAKFS  253 (271)
T ss_pred             HHHcCCEEEEECCCCcccCHHHHHHHHHHcCCCEEEECCC-CCCCCCccccEEEECcHH
Confidence            4567899999999999999999999999999999988765 45665 468888776443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	336
3fxa_A	201	Crystal Structure Of A Putative Sugar-Phosphate Iso		9e-23
2xhz_A	183	Probing The Active Site Of The Sugar Isomerase Doma		1e-21
3etn_A	220	Crystal Structure Of Putative Phosphosugar Isomeras		4e-15
3k2v_A	149	Structure Of The Cbs Pair Of A Putative D-Arabinose		4e-14
3fna_A	149	Crystal Structure Of The Cbs Pair Of Possible D-Ara		5e-14
1vim_A	200	Crystal Structure Of An Hypothetical Protein Length		5e-08
1jeo_A	180	Crystal Structure Of The Hypothetical Protein Mj124		1e-04
1x94_A	191	Crystal Structure Of A Hypothetical Protein Length		4e-04
2p9m_A	138	Crystal Structure Of Conserved Hypothetical Protein		7e-04

>pdb|3FXA|A Chain A, Crystal Structure Of A Putative Sugar-Phosphate Isomerase (Lmof2365_0531) From Listeria Monocytogenes Str. 4b F2365 At 1.60 A Resolution Length = 201

Iteration: 1
 Score =  103 bits (258), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 54/163 (33%), Positives = 87/163 (53%)
Query: 48  QTLLKCRGTIFFTGVGKSGFVANKISQTLISLGIKSGFLNPLDALHGDIGILSSDDILVM 107
           + + +C G I   G G SG  A K+  +   +   + FL P DA+HG +G+L  +DIL++
Sbjct: 39  EKIAECTGKIVVAGCGTSGVAAKKLVHSFNCIERPAVFLTPSDAVHGTLGVLQKEDILIL 98
Query: 108 FSKSGNTEELLKVVPCAKAKGAYLVSVTSVEGNALAAVCDMNVHLPVERELCPFDLAPVT 167
            SK GNT ELL ++P  K KG+ L+ VT    + +A   D+   + V +E  PF+     
Sbjct: 99  ISKGGNTGELLNLIPACKTKGSTLIGVTENPDSVIAKEADIFFPVSVSKEPDPFNXLATA 158
Query: 168 STAIQMVFGDTVAIAMMGARNLTRDEYAANHPAGRIGKSLIFK 210
           ST   +   D V + +    N T+++++  HP G +G  L+ K
Sbjct: 159 STXAVIASFDAVIVCLXTYXNYTKEQFSVIHPGGAVGNKLLNK 201

>pdb|2XHZ|A Chain A, Probing The Active Site Of The Sugar Isomerase Domain From E. Coli Arabinose-5-Phosphate Isomerase Via X-Ray Crystallography Length = 183

Iteration: 1
 Score =  100 bits (249), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 49/167 (29%), Positives = 95/167 (56%), Gaps = 1/167 (0%)
Query: 22  DLFKSQQDHLNYFFQHLSLPHTLTFTQTLLKCRGTIFFTGVGKSGFVANKISQTLISLGI 81
           ++   +++ L    Q+++   TL   + +  C+G +   G+G SG +  K++ T  S G 
Sbjct: 18  EVLAIERECLAELDQYINQNFTLA-CEKMFWCKGKVVVMGMGASGHIGRKMAATFASTGT 76
Query: 82  KSGFLNPLDALHGDIGILSSDDILVMFSKSGNTEELLKVVPCAKAKGAYLVSVTSVEGNA 141
            S F++P +A HGD+G+++  D+++  S SG + E+  ++P  K     L+ +T    ++
Sbjct: 77  PSFFVHPGEAAHGDLGMVTPQDVVIAISNSGESSEITALIPVLKRLHVPLICITGRPESS 136
Query: 142 LAAVCDMNVHLPVERELCPFDLAPVTSTAIQMVFGDTVAIAMMGARN 188
           +A   D+++ + V +E CP  LAP +ST   +V GD +A+A++ AR 
Sbjct: 137 MARAADVHLCVKVAKEACPLGLAPTSSTTATLVMGDALAVALLKARG 183

>pdb|3ETN|A Chain A, Crystal Structure Of Putative Phosphosugar Isomerase Involved In Capsule Formation (Yp_209877.1) From Bacteroides Fragilis Nctc 9343 At 1.70 A Resolution Length = 220

Iteration: 1
 Score = 78.6 bits (192), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 50/160 (31%), Positives = 84/160 (52%), Gaps = 2/160 (1%)
Query: 48  QTLLKCRGTIFFTGVGKSGFVANKISQTLISLGIKSGFLNPLDALHGDIGILSSDDILVM 107
           + + + +G +  +G GK+G +A  I+ T  S GI S FL+P +A HGD+GIL  +D+L++
Sbjct: 53  EQIHRKKGKLVTSGXGKAGQIAXNIATTFCSTGIPSVFLHPSEAQHGDLGILQENDLLLL 112
Query: 108 FSKSGNTEELLKVVPCAK--AKGAYLVSVTSVEGNALAAVCDMNVHLPVERELCPFDLAP 165
            S SG T E++++   A     G   + +T    + LA+  D+ +      E+C     P
Sbjct: 113 ISNSGKTREIVELTQLAHNLNPGLKFIVITGNPDSPLASESDVCLSTGHPAEVCTLGXTP 172
Query: 166 VTSTAIQMVFGDTVAIAMMGARNLTRDEYAANHPAGRIGK 205
            TST +  V GD + +        T +EY+  H  G +G+
Sbjct: 173 TTSTTVXTVIGDILVVQTXKRTEFTIEEYSKRHHGGYLGE 212

>pdb|3K2V|A Chain A, Structure Of The Cbs Pair Of A Putative D-Arabinose 5-Phosphate Isomerase From Klebsiella Pneumoniae Subsp. Pneumoniae. Length = 149

Iteration: 1
 Score = 75.5 bits (184), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 44/149 (29%), Positives = 77/149 (51%), Gaps = 4/149 (2%)
Query: 186 ARNLTRDEYAANHPAGRIGKSLIFKVQDVMKPQKELPVCKEGDLIMDQLVELTSKGCGCL 245
           AR  T +++A +HP G +G+ L+ +V D+     E+P       + D L+E+T K  G  
Sbjct: 5   ARGFTAEDFALSHPGGALGRKLLLRVNDIXHTGDEIPHVGLQATLRDALLEITRKNLGXT 64
Query: 246 LVIDEEYHLIGTFTDGDLRRTLKASGEGIFKLTVGEMCNRSPRTIGPDAMAVEAMQKMES 305
            + D++ ++IG FTDGDLRR    +G      ++ ++  R    I P  +AV+A+   +S
Sbjct: 65  AICDDDXNIIGIFTDGDLRRVFD-TGVDXRDASIADVXTRGGIRIRPGTLAVDALNLXQS 123
Query: 306 PPSPVQFLPVINRQNILIGIVTLHGLVSA 334
                    ++   + L+G+V  H L+ A
Sbjct: 124 RHITC---VLVADGDHLLGVVHXHDLLRA 149

>pdb|3FNA|A Chain A, Crystal Structure Of The Cbs Pair Of Possible D-Arabinose 5-Phosphate Isomerase Yrbh From Escherichia Coli Cft073 Length = 149

Iteration: 1
 Score = 75.1 bits (183), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 44/149 (29%), Positives = 80/149 (53%), Gaps = 4/149 (2%)
Query: 186 ARNLTRDEYAANHPAGRIGKSLIFKVQDVMKPQKELPVCKEGDLIMDQLVELTSKGCGCL 245
           AR  T +++A +HP G +G+ L+ +V D+     E+P  K+   + D L+E+T K  G  
Sbjct: 5   ARGFTAEDFALSHPGGALGRKLLLRVNDIXHTGDEIPHVKKTASLRDALLEVTRKNLGXT 64
Query: 246 LVIDEEYHLIGTFTDGDLRRTLKASGEGIFKLTVGEMCNRSPRTIGPDAMAVEAMQKMES 305
           ++ D+   + G FTDGDLRR     G  + +L++ ++       + P  +AVEA+   +S
Sbjct: 65  VICDDNXXIEGIFTDGDLRRVFD-XGVDVRRLSIADVXTPGGIRVRPGILAVEALNLXQS 123
Query: 306 PPSPVQFLPVINRQNILIGIVTLHGLVSA 334
               +  + V +  + L+G++  H L+ A
Sbjct: 124 --RHITSVXVADGDH-LLGVLHXHDLLRA 149

>pdb|1VIM|A Chain A, Crystal Structure Of An Hypothetical Protein Length = 200

Iteration: 1
 Score = 55.5 bits (132), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 48/191 (25%), Positives = 86/191 (45%), Gaps = 20/191 (10%)
Query: 19  TLLDLFKSQQDHLNYFFQHLSLPHTLTFTQTLLKCRGTIFFTGVGKSGFVANKISQTLIS 78
           +LL   +   +H+     H+ L  T+     L+    +IF  G G+SG++A   +  L+ 
Sbjct: 13  SLLRFLEVVSEHIKNLRNHIDLE-TVGEMIKLIDSARSIFVIGAGRSGYIAKAFAMRLMH 71
Query: 79  LG----IKSGFLNPLDALHGDIGILSSDDILVMFSKSGNTEELLKVVPCAKAKGAYLVSV 134
           LG    +    + P          ++  D+LV  S SG T  ++ +   AK  G+ LV+V
Sbjct: 72  LGYTVYVVGETVTPR---------ITDQDVLVGISGSGETTSVVNISKKAKDIGSKLVAV 122
Query: 135 TSVEGNALAAVCDMNV----HLPVERELCPFDLAPVTS--TAIQMVFGDTVAIAMMGARN 188
           T    ++LA + D+ +     +  ER+     LAP+ +      M+F D +   +M  ++
Sbjct: 123 TGKRDSSLAKMADVVMVVKGKMKQERDEILSQLAPLGTMFELTAMIFLDALVAEIMMQKH 182
Query: 189 LTRDEYAANHP 199
           LT  +  A H 
Sbjct: 183 LTEKDLEARHA 193

>pdb|1JEO|A Chain A, Crystal Structure Of The Hypothetical Protein Mj1247 From Methanococcus Jannaschii At 2.0 A Resolution Infers A Molecular Function Of 3-Hexulose-6-Phosphate Isomerase Length = 180

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 38/142 (26%), Positives = 63/142 (44%), Gaps = 8/142 (5%)
Query: 57  IFFTGVGKSGFVANKISQTLISLGIKSGFLNPLDALHGDIGILSSDDILVMFSKSGNTEE 116
           IF  GVG+SG++    +  L+ LG KS F+        +      DD+L++ S SG TE 
Sbjct: 43  IFIFGVGRSGYIGRCFAMRLMHLGFKSYFVGETTTPSYE-----KDDLLILISGSGRTES 97
Query: 117 LLKVVPCAKAKGAYLVSVTSVEGNALAAVCDMNVHLPVERELCPFDLAPVTSTAIQMVFG 176
           +L V   AK     ++++    GN +      ++ +P+E +   +     T     ++F 
Sbjct: 98  VLTVAKKAKNINNNIIAIVXEXGNVVEFA---DLTIPLEVKKSKYLPMGTTFEETALIFL 154
Query: 177 DTVAIAMMGARNLTRDEYAANH 198
           D V   +M   NL   E    H
Sbjct: 155 DLVIAEIMKRLNLDESEIIKRH 176

>pdb|1X94|A Chain A, Crystal Structure Of A Hypothetical Protein Length = 191

Iteration: 1
 Score = 42.4 bits (98), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 18/51 (35%), Positives = 31/51 (60%)
Query: 103 DILVMFSKSGNTEELLKVVPCAKAKGAYLVSVTSVEGNALAAVCDMNVHLP 153
           D+L   S SGN+  +LK +  AKAKG   +++T  +G  +A + D+ + +P
Sbjct: 113 DVLFGLSTSGNSGNILKAIEAAKAKGMKTIALTGKDGGKMAGLADVEIRVP 163

>pdb|2P9M|A Chain A, Crystal Structure Of Conserved Hypothetical Protein Mj0922 From Methanocaldococcus Jannaschii Dsm 2661 Length = 138

Iteration: 1
 Score = 41.6 bits (96), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 32/122 (26%), Positives = 59/122 (48%), Gaps = 6/122 (4%)
Query: 209 FKVQDVMKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRRTLK 268
            KV+DV    K +   K  + +++   +        L VID+E  +IG  T  D+   L 
Sbjct: 8   IKVKDVX--TKNVITAKRHEGVVEAFEKXLKYKISSLPVIDDENKVIGIVTTTDIGYNL- 64
Query: 269 ASGEGIFKLTVGEMCNRSPRTIGPDAMAVEAMQKME---SPPSPVQFLPVINRQNILIGI 325
              +   + T+G++  +   TI  DA  +EA++K +        +  LPV+++ N L+GI
Sbjct: 65  IRDKYTLETTIGDVXTKDVITIHEDASILEAIKKXDISGKKEEIINQLPVVDKNNKLVGI 124
Query: 326 VT 327
           ++
Sbjct: 125 IS 126

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	336
3fxa_A	201	SIS domain protein; structural genomics, joint cen	1e-58
3etn_A	220	Putative phosphosugar isomerase involved in capsu	3e-54
2xhz_A	183	KDSD, YRBH, arabinose 5-phosphate isomerase; lipop	2e-48
3k2v_A	149	Putative D-arabinose 5-phosphate isomerase; KPSF-l	2e-45
1m3s_A	186	Hypothetical protein YCKF; structural genomics, PS	7e-41
1vim_A	200	Hypothetical protein AF1796; structural genomics,	5e-40
1jeo_A	180	MJ1247, hypothetical protein MJ1247; RUMP pathway,	8e-37
3lqn_A	150	CBS domain protein; csgid, structural genomics, un	1e-21
3ctu_A	156	CBS domain protein; structural genomics, PSI-2, pr	1e-20
1yav_A	159	Hypothetical protein BSU14130; cystathionine beta	8e-20
2emq_A	157	Hypothetical conserved protein; CBS domains, NPPSF	2e-19
1pbj_A	125	Hypothetical protein; structural genomics, domain,	3e-19
3fhm_A	165	Uncharacterized protein ATU1752; CBS domain, proka	3e-17
1y5h_A	133	Hypothetical protein RV2626C; CBS domain, unknown	5e-17
1y5h_A	133	Hypothetical protein RV2626C; CBS domain, unknown	2e-05
1pvm_A	184	Conserved hypothetical protein TA0289; structural	1e-16
1pvm_A	184	Conserved hypothetical protein TA0289; structural	1e-04
2yzi_A	138	Hypothetical protein PH0107; sheet/helix/sheet/she	3e-16
2yzi_A	138	Hypothetical protein PH0107; sheet/helix/sheet/she	2e-04
2p9m_A	138	Hypothetical protein MJ0922; structural genomics,	9e-16
2p9m_A	138	Hypothetical protein MJ0922; structural genomics,	1e-04
2rc3_A	135	CBS domain; in SITU proteolysis, BR, structural ge	3e-15
4fry_A	157	Putative signal-transduction protein with CBS DOM;	5e-15
3sl7_A	180	CBS domain-containing protein CBSX2; CBS-PAIR prot	1e-14
2ef7_A	133	Hypothetical protein ST2348; CBS-domain, structura	2e-14
2ef7_A	133	Hypothetical protein ST2348; CBS-domain, structura	3e-04
2rih_A	141	Conserved protein with 2 CBS domains; bateman doma	3e-14
3ddj_A	296	CBS domain-containing protein; structural genomics	5e-14
3ddj_A	296	CBS domain-containing protein; structural genomics	2e-13
3gby_A	128	Uncharacterized protein CT1051; CBS domain, struct	5e-14
3fv6_A	159	YQZB protein; CBS domain dimer, metabolism regulat	2e-13
2nyc_A	144	Nuclear protein SNF4; bateman2 domain, AMP kinase,	3e-13
3sho_A	187	Transcriptional regulator, RPIR family; structural	4e-13
3kh5_A	280	Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, a	6e-12
3kh5_A	280	Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, a	7e-11
3kh5_A	280	Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, a	2e-08
2v8q_E	330	5'-AMP-activated protein kinase subunit gamma-1; p	6e-11
2v8q_E	330	5'-AMP-activated protein kinase subunit gamma-1; p	3e-04
2yzq_A	282	Putative uncharacterized protein PH1780; sheet/hel	6e-11
2yzq_A	282	Putative uncharacterized protein PH1780; sheet/hel	8e-07
2yzq_A	282	Putative uncharacterized protein PH1780; sheet/hel	5e-05
1o50_A	157	CBS domain-containing predicted protein TM0935; CB	8e-11
2uv4_A	152	5'-AMP-activated protein kinase subunit gamma-1; t	2e-10
3kpb_A	122	Uncharacterized protein MJ0100; CBS domain, S-aden	3e-10
1vr9_A	213	CBS domain protein/ACT domain protein; structural	4e-10
3t4n_C	323	Nuclear protein SNF4; CBS domain, nucleotide bindi	5e-10
2o16_A	160	Acetoin utilization protein ACUB, putative; struct	2e-09
1tzb_A	302	Glucose-6-phosphate isomerase, conjectural; enzyme	9e-09
3cvj_A	243	Putative phosphoheptose isomerase; rossman fold, 3	4e-08
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-04
3fio_A	70	A cystathionine beta-synthase domain protein fused	2e-06
2xbl_A	198	Phosphoheptose isomerase; capsule; HET: M7P PGE PG	4e-06
1tk9_A	188	Phosphoheptose isomerase 1; lipopolysaccharide bio	4e-06
2qrd_G	334	Protein C1556.08C; AMPK, ADP, ATP-binding, kinase,	5e-06
2i2w_A	212	Phosphoheptose isomerase; lipopolysaccharide biosy	1e-05
3kxr_A	205	Magnesium transporter, putative; cystathionine bet	1e-05
2j9l_A	185	Chloride channel protein 5; ION channel, ION trans	2e-05
2a3n_A	355	Putative glucosamine-fructose-6-phosphate aminotr;	6e-05
2yva_A	196	DNAA initiator-associating protein DIAA; intermole	2e-04
1x92_A	199	APC5045, phosphoheptose isomerase; midwest centre	2e-04
3trj_A	201	Phosphoheptose isomerase; lipopolysaccharide biosy	2e-04
2oux_A	286	Magnesium transporter; 10001B, structural genomics	3e-04
2yvy_A	278	MGTE, Mg2+ transporter MGTE; membrane protein, tra	3e-04
2zy9_A	473	Mg2+ transporter MGTE; membrane protien, metal tra	8e-04

>3fxa_A SIS domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.60A {Listeria monocytogenes str} Length = 201

 Score =  187 bits (476), Expect = 1e-58
 Identities = 55/163 (33%), Positives = 89/163 (54%)

Query: 48  QTLLKCRGTIFFTGVGKSGFVANKISQTLISLGIKSGFLNPLDALHGDIGILSSDDILVM 107
           + + +C G I   G G SG  A K+  +   +   + FL P DA+HG +G+L  +DIL++
Sbjct: 39  EKIAECTGKIVVAGCGTSGVAAKKLVHSFNCIERPAVFLTPSDAVHGTLGVLQKEDILIL 98

Query: 108 FSKSGNTEELLKVVPCAKAKGAYLVSVTSVEGNALAAVCDMNVHLPVERELCPFDLAPVT 167
            SK GNT ELL ++P  K KG+ L+ VT    + +A   D+   + V +E  PF++    
Sbjct: 99  ISKGGNTGELLNLIPACKTKGSTLIGVTENPDSVIAKEADIFFPVSVSKEPDPFNMLATA 158

Query: 168 STAIQMVFGDTVAIAMMGARNLTRDEYAANHPAGRIGKSLIFK 210
           ST   +   D V + +M   N T+++++  HP G +G  L+ K
Sbjct: 159 STMAVIASFDAVIVCLMTYMNYTKEQFSVIHPGGAVGNKLLNK 201

>3etn_A Putative phosphosugar isomerase involved in capsu formation; YP_209877.1; HET: MSE CMK; 1.70A {Bacteroides fragilis nctc 9343} Length = 220

 Score =  175 bits (447), Expect = 3e-54
 Identities = 51/162 (31%), Positives = 87/162 (53%), Gaps = 2/162 (1%)

Query: 48  QTLLKCRGTIFFTGVGKSGFVANKISQTLISLGIKSGFLNPLDALHGDIGILSSDDILVM 107
           + + + +G +  +G+GK+G +A  I+ T  S GI S FL+P +A HGD+GIL  +D+L++
Sbjct: 53  EQIHRKKGKLVTSGMGKAGQIAMNIATTFCSTGIPSVFLHPSEAQHGDLGILQENDLLLL 112

Query: 108 FSKSGNTEELLKVVPCAK--AKGAYLVSVTSVEGNALAAVCDMNVHLPVERELCPFDLAP 165
            S SG T E++++   A     G   + +T    + LA+  D+ +      E+C   + P
Sbjct: 113 ISNSGKTREIVELTQLAHNLNPGLKFIVITGNPDSPLASESDVCLSTGHPAEVCTLGMTP 172

Query: 166 VTSTAIQMVFGDTVAIAMMGARNLTRDEYAANHPAGRIGKSL 207
            TST +  V GD + +  M     T +EY+  H  G +G+  
Sbjct: 173 TTSTTVMTVIGDILVVQTMKRTEFTIEEYSKRHHGGYLGEKS 214

>2xhz_A KDSD, YRBH, arabinose 5-phosphate isomerase; lipopolysaccharide biogenesis; 2.60A {Escherichia coli} Length = 183

 Score =  159 bits (405), Expect = 2e-48
 Identities = 45/140 (32%), Positives = 83/140 (59%)

Query: 48  QTLLKCRGTIFFTGVGKSGFVANKISQTLISLGIKSGFLNPLDALHGDIGILSSDDILVM 107
           + +  C+G +   G+G SG +  K++ T  S G  S F++P +A HGD+G+++  D+++ 
Sbjct: 43  EKMFWCKGKVVVMGMGASGHIGRKMAATFASTGTPSFFVHPGEAAHGDLGMVTPQDVVIA 102

Query: 108 FSKSGNTEELLKVVPCAKAKGAYLVSVTSVEGNALAAVCDMNVHLPVERELCPFDLAPVT 167
            S SG + E+  ++P  K     L+ +T    +++A   D+++ + V +E CP  LAP +
Sbjct: 103 ISNSGESSEITALIPVLKRLHVPLICITGRPESSMARAADVHLCVKVAKEACPLGLAPTS 162

Query: 168 STAIQMVFGDTVAIAMMGAR 187
           ST   +V GD +A+A++ AR
Sbjct: 163 STTATLVMGDALAVALLKAR 182

>3k2v_A Putative D-arabinose 5-phosphate isomerase; KPSF-like protein, CBS domain, structural genomics, PSI-2, P structure initiative; HET: MSE CMK; 1.95A {Klebsiella pneumoniae subsp} PDB: 3fna_A* Length = 149

 Score =  151 bits (383), Expect = 2e-45
 Identities = 47/153 (30%), Positives = 84/153 (54%), Gaps = 4/153 (2%)

Query: 182 AMMGARNLTRDEYAANHPAGRIGKSLIFKVQDVMKPQKELPVCKEGDLIMDQLVELTSKG 241
           +   AR  T +++A +HP G +G+ L+ +V D+M    E+P       + D L+E+T K 
Sbjct: 1   SNAEARGFTAEDFALSHPGGALGRKLLLRVNDIMHTGDEIPHVGLQATLRDALLEITRKN 60

Query: 242 CGCLLVIDEEYHLIGTFTDGDLRRTLKASGEGIFKLTVGEMCNRSPRTIGPDAMAVEAMQ 301
            G   + D++ ++IG FTDGDLRR    +G  +   ++ ++  R    I P  +AV+A+ 
Sbjct: 61  LGMTAICDDDMNIIGIFTDGDLRRVFD-TGVDMRDASIADVMTRGGIRIRPGTLAVDALN 119

Query: 302 KMESPPSPVQFLPVINRQNILIGIVTLHGLVSA 334
            M+S    +  + V +  + L+G+V +H L+ A
Sbjct: 120 LMQS--RHITCVLVAD-GDHLLGVVHMHDLLRA 149

>1m3s_A Hypothetical protein YCKF; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.95A {Bacillus subtilis} SCOP: c.80.1.3 PDB: 1viv_A Length = 186

 Score =  140 bits (355), Expect = 7e-41
 Identities = 33/184 (17%), Positives = 74/184 (40%), Gaps = 12/184 (6%)

Query: 21  LDLFKSQQDHLNYFFQHLSLPHTLTFTQTLLKCRGTIFFTGVGKSGFVANKISQTLISLG 80
            +      + L+    ++S          +L     IF  G G+SG +A   +  L+ +G
Sbjct: 5   TEYVAEILNELHNSAAYISNEEADQLADHILSS-HQIFTAGAGRSGLMAKSFAMRLMHMG 63

Query: 81  IKSGFLNPLDALHGDIGILSSDDILVMFSKSGNTEELLKVVPCAKAKGAYLVSVTSVEGN 140
             +  +  +         L+  D++++ S SG T+ L+     AK+    + ++T    +
Sbjct: 64  FNAHIVGEILTPP-----LAEGDLVIIGSGSGETKSLIHTAAKAKSLHGIVAALTINPES 118

Query: 141 ALAAVCDMNVHLPVERELCPFD----LAPVTSTAIQ--MVFGDTVAIAMMGARNLTRDEY 194
           ++    D+ + +P   +         + P+ S   Q  ++F D V + +M  + L  +  
Sbjct: 119 SIGKQADLIIRMPGSPKDQSNGSYKTIQPMGSLFEQTLLLFYDAVILKLMEKKGLDSETM 178

Query: 195 AANH 198
             +H
Sbjct: 179 FTHH 182

>1vim_A Hypothetical protein AF1796; structural genomics, unknown function; 1.36A {Archaeoglobus fulgidus} SCOP: c.80.1.3 Length = 200

 Score =  138 bits (351), Expect = 5e-40
 Identities = 41/158 (25%), Positives = 71/158 (44%), Gaps = 11/158 (6%)

Query: 48  QTLLKCRGTIFFTGVGKSGFVANKISQTLISLGIKSGFLNPLDALHGDIGILSSDDILVM 107
             L+    +IF  G G+SG++A   +  L+ LG     +            ++  D+LV 
Sbjct: 41  IKLIDSARSIFVIGAGRSGYIAKAFAMRLMHLGYTVYVVGETVTPR-----ITDQDVLVG 95

Query: 108 FSKSGNTEELLKVVPCAKAKGAYLVSVTSVEGNALAAVCDMNVHLP----VERELCPFDL 163
            S SG T  ++ +   AK  G+ LV+VT    ++LA + D+ + +      ER+     L
Sbjct: 96  ISGSGETTSVVNISKKAKDIGSKLVAVTGKRDSSLAKMADVVMVVKGKMKQERDEILSQL 155

Query: 164 APV--TSTAIQMVFGDTVAIAMMGARNLTRDEYAANHP 199
           AP+        M+F D +   +M  ++LT  +  A H 
Sbjct: 156 APLGTMFELTAMIFLDALVAEIMMQKHLTEKDLEARHA 193

>1jeo_A MJ1247, hypothetical protein MJ1247; RUMP pathway, phosphosugar, 3-hexulose-6-phosphate isomerase structural genomics; HET: CME CIT; 2.00A {Methanocaldococcus jannaschii} SCOP: c.80.1.3 Length = 180

 Score =  129 bits (327), Expect = 8e-37
 Identities = 45/180 (25%), Positives = 75/180 (41%), Gaps = 12/180 (6%)

Query: 21  LDLFKSQQDHLNYFFQHLSLPHTLT-FTQTLLKCRGTIFFTGVGKSGFVANKISQTLISL 79
           LD+  +    L  F+ +    + L      ++K +  IF  GVG+SG++    +  L+ L
Sbjct: 7   LDIVSNNILILKKFYTNDEWKNKLDSLIDRIIKAK-KIFIFGVGRSGYIGRCFAMRLMHL 65

Query: 80  GIKSGFLNPLDALHGDIGILSSDDILVMFSKSGNTEELLKVVPCAKAKGAYLVSVTSVEG 139
           G KS F+               DD+L++ S SG TE +L V   AK     ++++   E 
Sbjct: 66  GFKSYFVGETTTPS-----YEKDDLLILISGSGRTESVLTVAKKAKNINNNIIAIVC-EC 119

Query: 140 NALAAVCDMNVHLPVERE-LCPFDLAPVTSTAIQMVFGDTVAIAMMGARNLTRDEYAANH 198
             +    D+ + L V++    P      T     ++F D V   +M   NL   E    H
Sbjct: 120 GNVVEFADLTIPLEVKKSKYLP---MGTTFEETALIFLDLVIAEIMKRLNLDESEIIKRH 176

>3lqn_A CBS domain protein; csgid, structural genomics, unknown function, center for structural genomics of infectious diseases; 1.80A {Bacillus anthracis} Length = 150

 Score = 88.6 bits (220), Expect = 1e-21
 Identities = 21/129 (16%), Positives = 52/129 (40%), Gaps = 8/129 (6%)

Query: 210 KVQDVMKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRRTL-- 267
            V+D+M   +++   + G+ +   L+ L   G   + V+D  Y L G  +   +   +  
Sbjct: 16  FVKDLMISSEKVAHVQIGNGLEHALLVLVKSGYSAIPVLDPMYKLHGLISTAMILDGILG 75

Query: 268 --KASGEGIFKLTVGEMCNRSPRTIGPDAMAVEAMQKMESPPSPVQFLPVINRQNILIGI 325
             +   E + ++ V ++  +    +  +    +A++     P    F+  +N      GI
Sbjct: 76  LERIEFERLEEMKVEQVMKQDIPVLKLEDSFAKALEMTIDHP----FICAVNEDGYFEGI 131

Query: 326 VTLHGLVSA 334
           +T   ++  
Sbjct: 132 LTRRAILKL 140

>1yav_A Hypothetical protein BSU14130; cystathionine beta synthase (CBS) domain, structural genomics, protein structure initiative, PSI; 2.10A {Bacillus subtilis} SCOP: d.37.1.1 Length = 159

 Score = 84.0 bits (208), Expect = 8e-20
 Identities = 23/130 (17%), Positives = 49/130 (37%), Gaps = 8/130 (6%)

Query: 202 RIGKSLIFKVQDVMKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDG 261
           +  + L   V   M    ++   + G+ +   L+ LT  G   + V+D  Y L G     
Sbjct: 7   QSDQLLEATVGQFMIEADKVAHVQVGNNLEHALLVLTKTGYTAIPVLDPSYRLHGLIGTN 66

Query: 262 DLRRTLK----ASGEGIFKLTVGEMCNRSPRTIGPDAMAVEAMQKMESPPSPVQFLPVIN 317
            +  ++        E + ++TV E+       +  +   ++    + +      F+ V N
Sbjct: 67  MIMNSIFGLERIEFEKLDQITVEEVMLTDIPRLHINDPIMKGFGMVINNG----FVCVEN 122

Query: 318 RQNILIGIVT 327
            + +  GI T
Sbjct: 123 DEQVFEGIFT 132

>2emq_A Hypothetical conserved protein; CBS domains, NPPSFA, national project on protein structural functional analyses; 2.50A {Geobacillus kaustophilus} Length = 157

 Score = 82.9 bits (205), Expect = 2e-19
 Identities = 26/129 (20%), Positives = 52/129 (40%), Gaps = 8/129 (6%)

Query: 210 KVQDVMKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRRTLKA 269
            V+  + P  ++   + G+ +   L+ LT  G   + V+D  Y L G  +   +   +  
Sbjct: 12  TVKPFLIPADKVAHVQPGNYLDHALLVLTKTGYSAIPVLDTSYKLHGLISMTMMMDAILG 71

Query: 270 ----SGEGIFKLTVGEMCNRSPRTIGPDAMAVEAMQKMESPPSPVQFLPVINRQNILIGI 325
                 E +  + V E+ NR+   +  D   ++A+  + + P    F+ V N      GI
Sbjct: 72  LERIEFERLETMKVEEVMNRNIPRLRLDDSLMKAVGLIVNHP----FVCVENDDGYFAGI 127

Query: 326 VTLHGLVSA 334
            T   ++  
Sbjct: 128 FTRREVLKQ 136

>1pbj_A Hypothetical protein; structural genomics, domain, PSI, protein structure initiative; 1.40A {Methanothermobacter thermautotrophicusdelta H} SCOP: d.37.1.1 Length = 125

 Score = 81.0 bits (201), Expect = 3e-19
 Identities = 31/127 (24%), Positives = 56/127 (44%), Gaps = 7/127 (5%)

Query: 210 KVQDVMKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRRTLKA 269
           +V+DVM    ++        + D L        G  +V+ E    +G  T  D+   + A
Sbjct: 2   RVEDVM--VTDVDTIDITASLEDVLRNYVENAKGSSVVVKEG-VRVGIVTTWDVLEAI-A 57

Query: 270 SGEGIFKLTVGEMCNRSPRTIGPDAMAVEAMQKMESPPSPVQFLPVINRQNILIGIVTLH 329
            G+ + ++ V E+  R   TI P A   EA +KM    + V  L V    + +IG+++  
Sbjct: 58  EGDDLAEVKVWEVMERDLVTISPRATIKEAAEKMVK--NVVWRLLVE-EDDEIIGVISAT 114

Query: 330 GLVSAGL 336
            ++ A +
Sbjct: 115 DILRAKM 121

>3fhm_A Uncharacterized protein ATU1752; CBS domain, prokaryotic, bound nucleotide, AMP, NADH, struct genomics, PSI-2; HET: AMP NAI; 2.70A {Agrobacterium tumefaciens str} Length = 165

 Score = 77.0 bits (190), Expect = 3e-17
 Identities = 24/131 (18%), Positives = 54/131 (41%), Gaps = 4/131 (3%)

Query: 205 KSLIFKVQDVMKPQKELPV-CKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDL 263
           + +   V+D++  +    V       I +    L +   G ++V D +  ++G FT+ DL
Sbjct: 20  QGMATFVKDLLDRKGRDVVTVGPDVSIGEAAGTLHAHKIGAVVVTDADGVVLGIFTERDL 79

Query: 264 RRTLKASGEGIFKLTVGEMCNRSPRTIGPDAMAVEAMQKMESPPSPVQFLPVINRQNILI 323
            + +   G    + +V     ++      ++   + M+ M       + +PV      L 
Sbjct: 80  VKAVAGQGAASLQQSVSVAMTKNVVRCQHNSTTDQLMEIMTG--GRFRHVPVE-ENGRLA 136

Query: 324 GIVTLHGLVSA 334
           GI+++  +V A
Sbjct: 137 GIISIGDVVKA 147

>1y5h_A Hypothetical protein RV2626C; CBS domain, unknown function; 1.50A {Mycobacterium tuberculosis} SCOP: d.37.1.1 PDB: 1xkf_A Length = 133

 Score = 75.3 bits (186), Expect = 5e-17
 Identities = 29/119 (24%), Positives = 49/119 (41%), Gaps = 5/119 (4%)

Query: 210 KVQDVMKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRRTLKA 269
             +D+M     +    E + +      +     G L +  ++  L G  TD D+     A
Sbjct: 9   TARDIM--NAGVTCVGEHETLTAAAQYMREHDIGALPICGDDDRLHGMLTDRDIVIKGLA 66

Query: 270 SGEGIFKLTVGEMCNRSPRTIGPDAMAVEAMQKMESPPSPVQFLPVINRQNILIGIVTL 328
           +G      T GE+   S   +  +A   E +  ME     V+ +PVI  ++ L+GIVT 
Sbjct: 67  AGLDPNTATAGELARDSIYYVDANASIQEMLNVMEE--HQVRRVPVI-SEHRLVGIVTE 122

>1y5h_A Hypothetical protein RV2626C; CBS domain, unknown function; 1.50A {Mycobacterium tuberculosis} SCOP: d.37.1.1 PDB: 1xkf_A Length = 133

 Score = 42.9 bits (102), Expect = 2e-05
 Identities = 11/52 (21%), Positives = 19/52 (36%), Gaps = 2/52 (3%)

Query: 276 KLTVGEMCNRSPRTIGPDAMAVEAMQKMESPPSPVQFLPVINRQNILIGIVT 327
             T  ++ N     +G       A Q M      +  LP+    + L G++T
Sbjct: 7   MTTARDIMNAGVTCVGEHETLTAAAQYMRE--HDIGALPICGDDDRLHGMLT 56

>1pvm_A Conserved hypothetical protein TA0289; structural genomics, CBS domain, PSI, protein structure initiative; 1.50A {Thermoplasma acidophilum dsm 1728} SCOP: d.37.1.1 g.41.13.1 PDB: 2qh1_A Length = 184

 Score = 75.5 bits (186), Expect = 1e-16
 Identities = 16/131 (12%), Positives = 47/131 (35%), Gaps = 4/131 (3%)

Query: 204 GKSLIFKVQDVMKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDL 263
           G  +  +V+ +M              + D +  +       L+V D+  + +G  ++  +
Sbjct: 4   GGHMFMRVEKIMN--SNFKTVNWNTTVFDAVKIMNENHLYGLVVKDDNGNDVGLLSERSI 61

Query: 264 RRTLKASGEGIFKLTVGEMCNRSPRTIGPDAMAVEAMQKMESPPSPVQFLPVINRQNILI 323
            +      +   ++ +  +  +    +  D    +    +    + ++   V++    ++
Sbjct: 62  IKRFIPRNKKPDEVPIRLVMRKPIPKVKSDYDVKDVAAYLSE--NGLERCAVVDDPGRVV 119

Query: 324 GIVTLHGLVSA 334
           GIVTL  L   
Sbjct: 120 GIVTLTDLSRY 130

>1pvm_A Conserved hypothetical protein TA0289; structural genomics, CBS domain, PSI, protein structure initiative; 1.50A {Thermoplasma acidophilum dsm 1728} SCOP: d.37.1.1 g.41.13.1 PDB: 2qh1_A Length = 184

 Score = 41.2 bits (97), Expect = 1e-04
 Identities = 15/85 (17%), Positives = 30/85 (35%), Gaps = 5/85 (5%)

Query: 210 KVQDVMKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRRTLKA 269
            ++ VM+  K +P  K    + D    L+  G     V+D+   ++G  T  DL    + 
Sbjct: 76  PIRLVMR--KPIPKVKSDYDVKDVAAYLSENGLERCAVVDDPGRVVGIVTLTDL---SRY 130

Query: 270 SGEGIFKLTVGEMCNRSPRTIGPDA 294
                    +     +  + + P  
Sbjct: 131 LSRASITDILLSHRTKDYQHLCPKC 155

>2yzi_A Hypothetical protein PH0107; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; 2.25A {Pyrococcus horikoshii} SCOP: d.37.1.1 Length = 138

 Score = 73.4 bits (181), Expect = 3e-16
 Identities = 26/125 (20%), Positives = 56/125 (44%), Gaps = 6/125 (4%)

Query: 210 KVQDVMKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRRTLKA 269
            ++  M   K+L   K    + +    +     G L+VI+++ +++G FT  D+ R +  
Sbjct: 8   PIKVYM--TKKLLGVKPSTSVQEASRLMMEFDVGSLVVINDDGNVVGFFTKSDIIRRVIV 65

Query: 270 SGEGIFKLTVGEMCNRSPRTIGPDAMAVEAMQKMESPPSPVQFLPVINRQNILIGIVTLH 329
            G   + + V  +  R+  T   +    E ++KM      ++ + +   +  ++GI TL 
Sbjct: 66  PGLP-YDIPVERIMTRNLITANVNTPLGEVLRKMAE--HRIKHILIE-EEGKIVGIFTLS 121

Query: 330 GLVSA 334
            L+ A
Sbjct: 122 DLLEA 126

>2yzi_A Hypothetical protein PH0107; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; 2.25A {Pyrococcus horikoshii} SCOP: d.37.1.1 Length = 138

 Score = 39.5 bits (93), Expect = 2e-04
 Identities = 12/52 (23%), Positives = 18/52 (34%), Gaps = 2/52 (3%)

Query: 276 KLTVGEMCNRSPRTIGPDAMAVEAMQKMESPPSPVQFLPVINRQNILIGIVT 327
           K  +     +    + P     EA + M      V  L VIN    ++G  T
Sbjct: 6   KAPIKVYMTKKLLGVKPSTSVQEASRLMME--FDVGSLVVINDDGNVVGFFT 55

>2p9m_A Hypothetical protein MJ0922; structural genomics, collaboratory for structural genomics, secsg; 2.59A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} Length = 138

 Score = 72.3 bits (178), Expect = 9e-16
 Identities = 34/121 (28%), Positives = 62/121 (51%), Gaps = 6/121 (4%)

Query: 210 KVQDVMKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRRTLKA 269
           KV+DVM   K +   K  + +++   ++       L VID+E  +IG  T  D+   L  
Sbjct: 9   KVKDVM--TKNVITAKRHEGVVEAFEKMLKYKISSLPVIDDENKVIGIVTTTDIGYNL-I 65

Query: 270 SGEGIFKLTVGEMCNRSPRTIGPDAMAVEAMQKMESPPSP---VQFLPVINRQNILIGIV 326
             +   + T+G++  +   TI  DA  +EA++KM+        +  LPV+++ N L+GI+
Sbjct: 66  RDKYTLETTIGDVMTKDVITIHEDASILEAIKKMDISGKKEEIINQLPVVDKNNKLVGII 125

Query: 327 T 327
           +
Sbjct: 126 S 126

>2p9m_A Hypothetical protein MJ0922; structural genomics, collaboratory for structural genomics, secsg; 2.59A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} Length = 138

 Score = 40.7 bits (96), Expect = 1e-04
 Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 2/56 (3%)

Query: 272 EGIFKLTVGEMCNRSPRTIGPDAMAVEAMQKMESPPSPVQFLPVINRQNILIGIVT 327
           + +  + V ++  ++  T       VEA +KM      +  LPVI+ +N +IGIVT
Sbjct: 3   DTLKNIKVKDVMTKNVITAKRHEGVVEAFEKMLK--YKISSLPVIDDENKVIGIVT 56

>2rc3_A CBS domain; in SITU proteolysis, BR, structural genomics, PSI-2, protein structure initiative; HET: NAD; 1.60A {Nitrosomonas europaea atcc 19718} SCOP: d.37.1.1 Length = 135

 Score = 70.7 bits (174), Expect = 3e-15
 Identities = 24/128 (18%), Positives = 55/128 (42%), Gaps = 5/128 (3%)

Query: 210 KVQDVMK-PQKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRRTLK 268
            V+ +++     +      D + + + ++ +   G LLV+ +E  L+G  T+ D  R   
Sbjct: 7   TVKHLLQEKGHTVVAIGPDDSVFNAMQKMAADNIGALLVMKDE-KLVGILTERDFSRKSY 65

Query: 269 ASGEGIFKLTVGEMCNRSPRTIGPDAMAVEAMQKMESPPSPVQFLPVINRQNILIGIVTL 328
              + +    V E+  R    +  +    + M  +      V+ LPV++    +IG++++
Sbjct: 66  LLDKPVKDTQVKEIMTRQVAYVDLNNTNEDCMALITE--MRVRHLPVLD-DGKVIGLLSI 122

Query: 329 HGLVSAGL 336
             LV   +
Sbjct: 123 GDLVKDAI 130

>4fry_A Putative signal-transduction protein with CBS DOM; CBS domain,ssgcid, structural genomics, niaid; HET: NAD AMP; 2.10A {Burkholderia ambifaria} Length = 157

 Score = 70.8 bits (174), Expect = 5e-15
 Identities = 30/127 (23%), Positives = 52/127 (40%), Gaps = 6/127 (4%)

Query: 208 IFKVQDVMKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRRTL 267
           I K +      + +    + D + D +  +  KG G LLV+D +  + G  T+ D  R +
Sbjct: 12  ILKAKPDSG--RTIYTVTKNDFVYDAIKLMAEKGIGALLVVDGD-DIAGIVTERDYARKV 68

Query: 268 KASGEGIFKLTVGEMCNRSPRTIGPDAMAVEAMQKMESPPSPVQFLPVINRQNILIGIVT 327
                      V E+     R + P     E M  M      ++ LPV+     LIG+++
Sbjct: 69  VLQERSSKATRVEEIMTAKVRYVEPSQSTDECMALMTE--HRMRHLPVL-DGGKLIGLIS 125

Query: 328 LHGLVSA 334
           +  LV +
Sbjct: 126 IGDLVKS 132

>3sl7_A CBS domain-containing protein CBSX2; CBS-PAIR protein, redox regulator, plant CBS domain, thiored chloroplast, membrane protein; 1.91A {Arabidopsis thaliana} Length = 180

 Score = 70.1 bits (172), Expect = 1e-14
 Identities = 37/152 (24%), Positives = 58/152 (38%), Gaps = 28/152 (18%)

Query: 209 FKVQDVMKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRRTLK 268
           + V D M P++ L V K    + D L  L  K    L VID+ + L+G  +D DL     
Sbjct: 4   YTVGDFMTPRQNLHVVKPSTSVDDALELLVEKKVTGLPVIDDNWTLVGVVSDYDLLALDS 63

Query: 269 ASGEG--------------------------IFKLTVGEMCNRSPRTIGPDAMAVEAMQK 302
            SG                             +   VG++   SP  +       +A + 
Sbjct: 64  ISGRSQNDTNLFPDVDSTWKTFNELQKLISKTYGKVVGDLMTPSPLVVRDSTNLEDAARL 123

Query: 303 MESPPSPVQFLPVINRQNILIGIVTLHGLVSA 334
           +    +  + LPV++    LIGI+T   +V A
Sbjct: 124 LLE--TKFRRLPVVDADGKLIGILTRGNVVRA 153

>2ef7_A Hypothetical protein ST2348; CBS-domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.10A {Sulfolobus tokodaii} SCOP: d.37.1.1 Length = 133

 Score = 68.4 bits (168), Expect = 2e-14
 Identities = 25/118 (21%), Positives = 50/118 (42%), Gaps = 7/118 (5%)

Query: 210 KVQDVMKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRRTLKA 269
            V++ MK   ++    +   + D    +T K  G ++V+D     +G  T+ D+ + +  
Sbjct: 5   IVKEYMK--TQVISVTKDAKLNDIAKVMTEKNIGSVIVVDGN-KPVGIITERDIVKAIGK 61

Query: 270 SGEGIFKLTVGEMCNRSPRTIGPDAMAVEAMQKMESPPSPVQFLPVINRQNILIGIVT 327
                 +    E    S  TI  D+    A+  M      ++ LPV++ +  L GI++
Sbjct: 62  --GKSLETKAEEFMTASLITIREDSPITGALALMRQ--FNIRHLPVVDDKGNLKGIIS 115

>2ef7_A Hypothetical protein ST2348; CBS-domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.10A {Sulfolobus tokodaii} SCOP: d.37.1.1 Length = 133

 Score = 39.1 bits (92), Expect = 3e-04
 Identities = 17/64 (26%), Positives = 28/64 (43%), Gaps = 2/64 (3%)

Query: 204 GKSLIFKVQDVMKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDL 263
           GKSL  K ++ M     L   +E   I   L  +       L V+D++ +L G  +  D+
Sbjct: 62  GKSLETKAEEFMT--ASLITIREDSPITGALALMRQFNIRHLPVVDDKGNLKGIISIRDI 119

Query: 264 RRTL 267
            R +
Sbjct: 120 TRAI 123

>2rih_A Conserved protein with 2 CBS domains; bateman domain, AMP binding protein, ligand-BIND protein; 2.10A {Pyrobaculum aerophilum} SCOP: d.37.1.1 PDB: 2rif_A Length = 141

 Score = 68.1 bits (167), Expect = 3e-14
 Identities = 20/129 (15%), Positives = 49/129 (37%), Gaps = 9/129 (6%)

Query: 206 SLIFKVQDVMKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVI--DEEYHLIGTFTDGDL 263
           ++  +  +++K  +      E   I +   EL     G  ++   D     +   ++ D+
Sbjct: 2   AMAIRTSELLK--RPPVSLPETATIREVATELAKNRVGLAVLTARDNPKRPVAVVSERDI 59

Query: 264 RRTLKASGEGIFKLTVGEMCNRSPRTIGPDAMAVEAMQKMESPPSPVQFLPVINRQNILI 323
            R +    +         +   SP T+        A +KM      ++ + V+N+   L+
Sbjct: 60  LRAVAQRLD--LDGPAMPIA-NSPITVLDTDPVHVAAEKMRR--HNIRHVVVVNKNGELV 114

Query: 324 GIVTLHGLV 332
           G++++  L 
Sbjct: 115 GVLSIRDLC 123

>3ddj_A CBS domain-containing protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.80A {Sulfolobus solfataricus} SCOP: d.37.1.1 d.37.1.1 Length = 296

 Score = 70.6 bits (173), Expect = 5e-14
 Identities = 25/130 (19%), Positives = 52/130 (40%), Gaps = 9/130 (6%)

Query: 210 KVQDVMKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRRTL-- 267
            V+  M    ++    +   +   +  +  +G   L VID++  ++G  T  +  + L  
Sbjct: 157 PVKVFMS--TKVQTIYKEVRLDQAVKLMLRRGFRRLPVIDDDNKVVGIVTVVNAIKQLAK 214

Query: 268 ---KASGEGIFKLTVGEMCNRSPRTIGPDAMAVEAMQKMESPPSPVQFLPVINRQNILIG 324
              K   +  +   V ++   +  TI   A    A  +M      +  L ++N+ N + G
Sbjct: 215 AVDKLDPDYFYGKVVKDVMVTNLVTIDELASVNRAAAEMIV--KRIGSLLILNKDNTIRG 272

Query: 325 IVTLHGLVSA 334
           I+T   L+ A
Sbjct: 273 IITERDLLIA 282

>3ddj_A CBS domain-containing protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.80A {Sulfolobus solfataricus} SCOP: d.37.1.1 d.37.1.1 Length = 296

 Score = 69.0 bits (169), Expect = 2e-13
 Identities = 25/138 (18%), Positives = 49/138 (35%), Gaps = 7/138 (5%)

Query: 197 NHPAGRIGKSLIFKVQDVMKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIG 256
           +   G +       + D M P                +  + ++  G L V+D     +G
Sbjct: 81  SCSQGDLYHISTTPIIDYMTP--NPVTVYNTSDEFTAINIMVTRNFGSLPVVDINDKPVG 138

Query: 257 TFTDGDLRRTLKASGEGIFKLTVGEMCNRSPRTIGPDAMAVEAMQKMESPPSPVQFLPVI 316
             T+ +     K   +      V    +   +TI  +    +A++ M       + LPVI
Sbjct: 139 IVTEREFLLLYK---DLDEIFPVKVFMSTKVQTIYKEVRLDQAVKLMLR--RGFRRLPVI 193

Query: 317 NRQNILIGIVTLHGLVSA 334
           +  N ++GIVT+   +  
Sbjct: 194 DDDNKVVGIVTVVNAIKQ 211

>3gby_A Uncharacterized protein CT1051; CBS domain, structural genomics, PSI-2, protein structure initiative; HET: EPE; 1.66A {Chlorobium tepidum tls} Length = 128

 Score = 67.1 bits (164), Expect = 5e-14
 Identities = 22/115 (19%), Positives = 41/115 (35%), Gaps = 5/115 (4%)

Query: 220 ELPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRRTLKASGEGIFKLTV 279
           + PV   G    D    L + GC C  V+D E   +G      L    K       K  +
Sbjct: 14  DYPVFTLGGSTADAARRLAASGCACAPVLDGE-RYLGMVHLSRLLEGRKGWPTV--KEKL 70

Query: 280 GEMCNRSPRTIGPDAMAVEAMQKMESPPSPVQFLPVINRQNILIGIVTLHGLVSA 334
           GE    + R+  P     + +  + +  +    +P+ +      G+V+   ++  
Sbjct: 71  GEELLETVRSYRPGEQLFDNLISVAA--AKCSVVPLADEDGRYEGVVSRKRILGF 123

>3fv6_A YQZB protein; CBS domain dimer, metabolism regulator, central glycolytic G regulator, transcription; 1.95A {Bacillus subtilis} PDB: 3fwr_A* 3fws_A* Length = 159

 Score = 65.8 bits (161), Expect = 2e-13
 Identities = 29/139 (20%), Positives = 54/139 (38%), Gaps = 19/139 (13%)

Query: 201 GRIGKSLIF------KVQDVMKPQKELPV-CKEGDLIMDQLVELTSKGCGCLLVIDEEYH 253
           G+ G  L+       +V+D        PV   E   + D +  +  +  G L V+D +  
Sbjct: 3   GKTGTQLLADKLKKLQVKDFQSI----PVVIHENVSVYDAICTMFLEDVGTLFVVDRDAV 58

Query: 254 LIGTFTDGDLRRTLKASGEGIFKLTVGEMCNRSPR--TIGPDAMAVEAMQKMESPPSPVQ 311
           L+G  +  DL R      + +  + V  +  R P       +   ++  + +      + 
Sbjct: 59  LVGVLSRKDLLRAS-IGQQELTSVPVHIIMTRMPNITVCRREDYVMDIAKHLIE--KQID 115

Query: 312 FLPVI---NRQNILIGIVT 327
            LPVI   ++   +IG VT
Sbjct: 116 ALPVIKDTDKGFEVIGRVT 134

>2nyc_A Nuclear protein SNF4; bateman2 domain, AMP kinase, protein binding; 1.90A {Saccharomyces cerevisiae} SCOP: d.37.1.1 PDB: 2nye_A Length = 144

 Score = 65.3 bits (160), Expect = 3e-13
 Identities = 26/133 (19%), Positives = 52/133 (39%), Gaps = 10/133 (7%)

Query: 208 IFKVQDVMKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRRTL 267
           I  +  + +    +  C+    ++D +  LT      + +IDE  +LI  +   D+   +
Sbjct: 10  IGDLNIITQ--DNMKSCQMTTPVIDVIQMLTQGRVSSVPIIDENGYLINVYEAYDVLGLI 67

Query: 268 KASGEGIFKLTVGE-MCNRSPR-----TIGPDAMAVEAMQKMESPPSPVQFLPVINRQNI 321
           K        L+VGE +  RS       T   +      M  +    + V    V++    
Sbjct: 68  KGGIYNDLSLSVGEALMRRSDDFEGVYTCTKNDKLSTIMDNIRK--ARVHRFFVVDDVGR 125

Query: 322 LIGIVTLHGLVSA 334
           L+G++TL  ++  
Sbjct: 126 LVGVLTLSDILKY 138

>3sho_A Transcriptional regulator, RPIR family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 1.80A {Sphaerobacter thermophilus} Length = 187

 Score = 66.1 bits (162), Expect = 4e-13
 Identities = 25/170 (14%), Positives = 57/170 (33%), Gaps = 8/170 (4%)

Query: 16  SENTLLDLFKSQQDHLNYFFQHLSLPHTLTFTQTLLKCRGTIFFTGVGKSGFVANKISQT 75
            +   + +F +  ++LN               + + +    +   G+G S  VA  +   
Sbjct: 2   RQQLPVQVFTNDIENLNQTLNQTQPEAIEAAVEAICRAD-HVIVVGMGFSAAVAVFLGHG 60

Query: 76  LISLGIKSGFLNPL-DALHGDIGILSSDDILVMFSKSGNTEELLKVVPCAKAKGAYLVSV 134
           L SLGI++  L      L   +  L   D+++  S      + +  +  A  +G   +++
Sbjct: 61  LNSLGIRTTVLTEGGSTLTITLANLRPTDLMIGVSVWRYLRDTVAALAGAAERGVPTMAL 120

Query: 135 TSVEGNALAAVCDMNVHLPVERELCPFDLAPVTSTAIQMVFGDTVAIAMM 184
           T    +  A + D    L          +    S    +   + +   + 
Sbjct: 121 TDSSVSPPARIAD--HVLVAATR----GVGHSLSPVGLIAVVNLLLAEIA 164

>3kh5_A Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, archaea, unknown function; HET: ADP AMP; 2.10A {Methanocaldococcus jannaschii} PDB: 3lfz_A* Length = 280

 Score = 64.0 bits (156), Expect = 6e-12
 Identities = 24/136 (17%), Positives = 51/136 (37%), Gaps = 15/136 (11%)

Query: 209 FKVQDVMKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRRTLK 268
             + D +   +++ V   G+ + D    +   G   L V+ E   L+G  T  D  + L 
Sbjct: 148 EVIDDYI--TRDVIVATPGERLKDVARTMVRNGFRRLPVVSEG-RLVGIITSTDFIKLLG 204

Query: 269 A----------SGEGIFKLTVGEMCNRSPRTIGPDAMAVEAMQKMESPPSPVQFLPVINR 318
           +          +   I  + + E+  R   T        +  + M +  + +  LPV++ 
Sbjct: 205 SDWAFNHMQTGNVREITNVRMEEIMKRDVITAKEGDKLKKIAEIMVT--NDIGALPVVDE 262

Query: 319 QNILIGIVTLHGLVSA 334
              + GI+T   ++  
Sbjct: 263 NLRIKGIITEKDVLKY 278

>3kh5_A Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, archaea, unknown function; HET: ADP AMP; 2.10A {Methanocaldococcus jannaschii} PDB: 3lfz_A* Length = 280

 Score = 60.9 bits (148), Expect = 7e-11
 Identities = 24/125 (19%), Positives = 52/125 (41%), Gaps = 7/125 (5%)

Query: 210 KVQDVMKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRRTLKA 269
            V+++M  ++ +   KE   I + +    +K  G   ++++E  LI   T+ D+ R L  
Sbjct: 85  PVREIM--EENVITLKENADIDEAIETFLTKNVGGAPIVNDENQLISLITERDVIRALLD 142

Query: 270 SGEGIFKLTVGEMCNRSPRTIGPDAMAVEAMQKMESPPSPVQFLPVINRQNILIGIVTLH 329
             +      + +   R      P     +  + M    +  + LPV++ +  L+GI+T  
Sbjct: 143 KIDENEV--IDDYITRDVIVATPGERLKDVARTMVR--NGFRRLPVVS-EGRLVGIITST 197

Query: 330 GLVSA 334
             +  
Sbjct: 198 DFIKL 202

>3kh5_A Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, archaea, unknown function; HET: ADP AMP; 2.10A {Methanocaldococcus jannaschii} PDB: 3lfz_A* Length = 280

 Score = 53.6 bits (129), Expect = 2e-08
 Identities = 21/132 (15%), Positives = 47/132 (35%), Gaps = 18/132 (13%)

Query: 210 KVQDVMKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVIDE-EYHLIGTFTDGDLRRTL- 267
            ++      K++        I   L+ +       L V++     ++G  T  D+   + 
Sbjct: 5   VMKIAQN--KKIVTVYPTTTIRKALMTMNENKYRRLPVVNAGNNKVVGIITSMDIVDFMG 62

Query: 268 ------------KASGEGIFKLTVGEMCNRSPRTIGPDAMAVEAMQKMESPPSPVQFLPV 315
                       + +        V E+   +  T+  +A   EA++   +    V   P+
Sbjct: 63  GGSKYNLIREKHERNFLAAINEPVREIMEENVITLKENADIDEAIETFLT--KNVGGAPI 120

Query: 316 INRQNILIGIVT 327
           +N +N LI ++T
Sbjct: 121 VNDENQLISLIT 132

>2v8q_E 5'-AMP-activated protein kinase subunit gamma-1; phosphorylation, nucleotide-binding, serine/threonine-protei kinase, magnesium, CBS domain; HET: AMP; 2.10A {Rattus norvegicus} SCOP: d.37.1.1 d.37.1.1 PDB: 2v92_E* 2v9j_E* 2y8l_E* 2y8q_E* 2y94_E* 2ya3_E* Length = 330

 Score = 61.9 bits (150), Expect = 6e-11
 Identities = 20/165 (12%), Positives = 52/165 (31%), Gaps = 10/165 (6%)

Query: 176 GDTVAIAMMGARNLTRDEYAANHPAGRIGKSLIFKVQDVMKPQKELPVCKEGDLIMDQLV 235
           G+T+ I            +    P        + ++Q        + + +    +   L 
Sbjct: 160 GNTLYILTHKRILKFLKLFITEFPKPEFMSKSLEELQIGT--YANIAMVRTTTPVYVALG 217

Query: 236 ELTSKGCGCLLVIDEEYHLIGTFTDGDLRRTLKASGEGIFKLTVGEM------CNRSPRT 289
                    L V+DE+  ++  ++  D+             ++V +              
Sbjct: 218 IFVQHRVSALPVVDEKGRVVDIYSKFDVINLAAEKTYNNLDVSVTKALQHRSHYFEGVLK 277

Query: 290 IGPDAMAVEAMQKMESPPSPVQFLPVINRQNILIGIVTLHGLVSA 334
                     + ++    + V  L V++  +++ GIV+L  ++ A
Sbjct: 278 CYLHETLEAIINRLVE--AEVHRLVVVDEHDVVKGIVSLSDILQA 320

>2v8q_E 5'-AMP-activated protein kinase subunit gamma-1; phosphorylation, nucleotide-binding, serine/threonine-protei kinase, magnesium, CBS domain; HET: AMP; 2.10A {Rattus norvegicus} SCOP: d.37.1.1 d.37.1.1 PDB: 2v92_E* 2v9j_E* 2y8l_E* 2y8q_E* 2y94_E* 2ya3_E* Length = 330

 Score = 41.1 bits (96), Expect = 3e-04
 Identities = 20/141 (14%), Positives = 45/141 (31%), Gaps = 18/141 (12%)

Query: 210 KVQDVMKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYH-LIGTFTDGDLRRTLK 268
           +  D++    +L V      +      L + G     + D +    +G  T  D    L 
Sbjct: 36  RCYDLIPTSSKLVVFDTSLQVKKAFFALVTNGVRAAPLWDSKKQSFVGMLTITDFINILH 95

Query: 269 ASGE--------------GIFKLTVGEMCNRSPRTIGPDAMAVEAMQKMESPPSPVQFLP 314
              +                ++    +   +    I P+A   +A+  +    + +  LP
Sbjct: 96  RYYKSALVQIYELEEHKIETWREVYLQDSFKPLVCISPNASLFDAVSSLIR--NKIHRLP 153

Query: 315 VINR-QNILIGIVTLHGLVSA 334
           VI+      + I+T   ++  
Sbjct: 154 VIDPESGNTLYILTHKRILKF 174

>2yzq_A Putative uncharacterized protein PH1780; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; HET: SAM; 1.63A {Pyrococcus horikoshii} SCOP: d.37.1.1 d.37.1.1 Length = 282

 Score = 61.3 bits (149), Expect = 6e-11
 Identities = 25/118 (21%), Positives = 50/118 (42%), Gaps = 4/118 (3%)

Query: 210 KVQDVMKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRRTLKA 269
           ++  ++K  +++PV KE D +      +       ++V+D +   +G  T GD+ R   A
Sbjct: 61  QLAMLVK--RDVPVVKENDTLKKAAKLMLEYDYRRVVVVDSKGKPVGILTVGDIIRRYFA 118

Query: 270 SGEGIFKLTVGEMCNRSPRTIGPDAMAVEAMQKMESPPSPVQFLPVINRQNILIGIVT 327
             E    + +     R    +        A++ +    S    LPV++ +  L+GIV 
Sbjct: 119 KSEKYKGVEIEPYYQRYVSIVWEGTPLKAALKALLL--SNSMALPVVDSEGNLVGIVD 174

>2yzq_A Putative uncharacterized protein PH1780; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; HET: SAM; 1.63A {Pyrococcus horikoshii} SCOP: d.37.1.1 d.37.1.1 Length = 282

 Score = 49.0 bits (117), Expect = 8e-07
 Identities = 14/118 (11%), Positives = 38/118 (32%), Gaps = 11/118 (9%)

Query: 210 KVQDVMKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRRTLKA 269
           +V+ +M   +              L            V+++E  L+G  +   +      
Sbjct: 2   RVKTIMT--QNPVTITLPATRNYALELFKKYKVRSFPVVNKEGKLVGIISVKRILVNPD- 58

Query: 270 SGEGIFKLTVGEMCNRSPRTIGPDAMAVEAMQKMESPPSPVQFLPVINRQNILIGIVT 327
                 +  +  +  R    +  +    +A + M       + + V++ +   +GI+T
Sbjct: 59  ------EEQLAMLVKRDVPVVKENDTLKKAAKLMLE--YDYRRVVVVDSKGKPVGILT 108

>2yzq_A Putative uncharacterized protein PH1780; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; HET: SAM; 1.63A {Pyrococcus horikoshii} SCOP: d.37.1.1 d.37.1.1 Length = 282

 Score = 43.2 bits (102), Expect = 5e-05
 Identities = 29/154 (18%), Positives = 49/154 (31%), Gaps = 33/154 (21%)

Query: 210 KVQDVMKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRRTL-- 267
           +++     Q+ + +  EG  +   L  L       L V+D E +L+G   + DL R    
Sbjct: 127 EIEPYY--QRYVSIVWEGTPLKAALKALLLSNSMALPVVDSEGNLVGIVDETDLLRDSEI 184

Query: 268 ---------------------------KASGEGIFKLTVGEMCNRSPRTIGPDAMAVEAM 300
                                      +     +    V E+  R      P     E  
Sbjct: 185 VRIMKSTELAASSEEEWILESHPTLLFEKFELQLPNKPVAEIMTRDVIVATPHMTVHEVA 244

Query: 301 QKMESPPSPVQFLPVINRQNILIGIVTLHGLVSA 334
            KM      ++ LPVI  +  LIG++    L+  
Sbjct: 245 LKMAK--YSIEQLPVIRGEGDLIGLIRDFDLLKV 276

>1o50_A CBS domain-containing predicted protein TM0935; CBS-domain PAIR fold, structural genomics, joint center for structural genomics, JCSG; 1.87A {Thermotoga maritima} SCOP: d.37.1.1 Length = 157

 Score = 58.8 bits (143), Expect = 8e-11
 Identities = 20/140 (14%), Positives = 51/140 (36%), Gaps = 21/140 (15%)

Query: 210 KVQDVMKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRR---- 265
            V  ++    +  V +E   I + +  +        + +  +  L+G      L +    
Sbjct: 17  DVCKLI--SLKPTVVEEDTPIEEIVDRILEDPVTRTVYVARDNKLVGMIPVMHLLKVSGF 74

Query: 266 ----------TLKASGEGIFKLTVGE-MCNRSPRTIGPDAMAVEAMQKMESPPSPVQFLP 314
                      +++S + +      E M    P  +  D    EA++ M    + +Q +P
Sbjct: 75  HFFGFIPKEELIRSSMKRLIAKNASEIM--LDPVYVHMDTPLEEALKLMID--NNIQEMP 130

Query: 315 VINRQNILIGIVTLHGLVSA 334
           V++ +  ++G +    ++ A
Sbjct: 131 VVDEKGEIVGDLNSLEILLA 150

>3kpb_A Uncharacterized protein MJ0100; CBS domain, S-adenosylmethionine, conformational change, unknown function; HET: SAM; 1.60A {Methanocaldococcus jannaschii} PDB: 3kpd_A* 3kpc_A* Length = 122

 Score = 56.0 bits (136), Expect = 3e-10
 Identities = 28/118 (23%), Positives = 47/118 (39%), Gaps = 9/118 (7%)

Query: 210 KVQDVMKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRRTLKA 269
            V+D++   K          IM+    L       L ++DE   L+G  T  D+ + L  
Sbjct: 2   LVKDIL--SKPPITAHSNISIMEAAKILIKHNINHLPIVDEHGKLVGIITSWDIAKALAQ 59

Query: 270 SGEGIFKLTVGEMCNRSPRTIGPDAMAVEAMQKMESPPSPVQFLPVINRQNILIGIVT 327
           +     K T+ E+  R+  T   D        KM      +  +PV++    ++GIVT
Sbjct: 60  N-----KKTIEEIMTRNVITAHEDEPVDHVAIKMSK--YNISGVPVVDDYRRVVGIVT 110

>1vr9_A CBS domain protein/ACT domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE; 1.70A {Thermotoga maritima} SCOP: d.37.1.1 Length = 213

 Score = 57.8 bits (140), Expect = 4e-10
 Identities = 26/138 (18%), Positives = 48/138 (34%), Gaps = 17/138 (12%)

Query: 203 IGKSLIF------KVQDVMKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIG 256
           +G   I       KV+  +   ++ P+ +E   + + L  +        +V D E H  G
Sbjct: 1   MGSDKIHHHHHHMKVKKWV--TQDFPMVEESATVRECLHRMRQYQTNECIVKDREGHFRG 58

Query: 257 TFTDGDLRRTLKASGEGIFKLTVGEMCNRSPRTIGPDAMAVEAMQKMESPPSPVQFLPVI 316
                DL      S       +V    +     +  +     A+           +LPV+
Sbjct: 59  VVNKEDLLDLDLDS-------SVFNKVSLPDFFVHEEDNITHALLLFLE--HQEPYLPVV 109

Query: 317 NRQNILIGIVTLHGLVSA 334
           + +  L G V+LH  + A
Sbjct: 110 DEEMRLKGAVSLHDFLEA 127

>3t4n_C Nuclear protein SNF4; CBS domain, nucleotide binding, cytosol, protein binding; HET: ADP; 2.30A {Saccharomyces cerevisiae} PDB: 3tdh_C* 3te5_C* 2qlv_C Length = 323

 Score = 58.8 bits (142), Expect = 5e-10
 Identities = 28/176 (15%), Positives = 61/176 (34%), Gaps = 13/176 (7%)

Query: 165 PVTSTAIQMVFGDTVAIAMMGARNLTRDEYAANHPAGRIGKSLIFKVQDVMKPQKELPVC 224
           P+     +      V+  ++    + +           +   +       +  Q  +  C
Sbjct: 149 PLIDQDEETHREIVVS--VLTQYRILKFVALNCRETHFLKIPI---GDLNIITQDNMKSC 203

Query: 225 KEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRRTLKASGEGIFKLTVGE-MC 283
           +    ++D +  LT      + +IDE  +LI  +   D+   +K        L+VGE + 
Sbjct: 204 QMTTPVIDVIQMLTQGRVSSVPIIDENGYLINVYEAYDVLGLIKGGIYNDLSLSVGEALM 263

Query: 284 NRSPR-----TIGPDAMAVEAMQKMESPPSPVQFLPVINRQNILIGIVTLHGLVSA 334
            RS       T   +      M  +    + V    V++    L+G++TL  ++  
Sbjct: 264 RRSDDFEGVYTCTKNDKLSTIMDNIRK--ARVHRFFVVDDVGRLVGVLTLSDILKY 317

>2o16_A Acetoin utilization protein ACUB, putative; structural genomics, unknown function, PSI-2, protein struct initiative; 1.90A {Vibrio cholerae} SCOP: d.37.1.1 Length = 160

 Score = 54.6 bits (132), Expect = 2e-09
 Identities = 24/126 (19%), Positives = 49/126 (38%), Gaps = 14/126 (11%)

Query: 210 KVQDVMKPQKELPV-CKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRR--- 265
           KV+D+M      P        + D    + +     + ++D    L+G  +  DL     
Sbjct: 6   KVEDMMTRH---PHTLLRTHTLNDAKHLMEALDIRHVPIVDANKKLLGIVSQRDLLAAQE 62

Query: 266 ----TLKASGEGIFKLTVGEMCNRSPRTIGPDAMAVEAMQKMESPPSPVQFLPVINRQNI 321
                        F+  + E+ +    ++ P A   E+   M+     +  LPV+  +++
Sbjct: 63  SSLQRSAQGDSLAFETPLFEVMHTDVTSVAPQAGLKESAIYMQK--HKIGCLPVV-AKDV 119

Query: 322 LIGIVT 327
           L+GI+T
Sbjct: 120 LVGIIT 125

>1tzb_A Glucose-6-phosphate isomerase, conjectural; enzyme, crenarchaeon, hyperthermophIle, PGI family; 1.16A {Pyrobaculum aerophilum} SCOP: c.80.1.1 PDB: 1tzc_A* 1x9h_A* 1x9i_A* Length = 302

 Score = 54.9 bits (131), Expect = 9e-09
 Identities = 31/138 (22%), Positives = 58/138 (42%), Gaps = 9/138 (6%)

Query: 22  DLFKSQQDHLNYFFQHLSLPHTLTFTQTL--LKCRGTIFFTGVGKSGFVANKISQTLISL 79
            L +   +  NY  + +  P +      +  ++    ++ +G+G SG VA+ I    ++ 
Sbjct: 3   QLLQDYLNWENYILRRVDFPTSYVVEGEVVRIEAMPRLYISGMGGSGVVADLIRDFSLTW 62

Query: 80  GIKSGFLNPLDALHGDIGILSSDDILVMFSKSGNTEELLKVVPCAKAKGAYLVSVTSVEG 139
             +   +        D  + + D +L+  S SGNT E L  V  AK +    V++T+  G
Sbjct: 63  NWEVEVI-----AVKDYFLKARDGLLIAVSYSGNTIETLYTVEYAKRRRIPAVAITT--G 115

Query: 140 NALAAVCDMNVHLPVERE 157
             LA +    V +P    
Sbjct: 116 GRLAQMGVPTVIVPKASA 133

>3cvj_A Putative phosphoheptose isomerase; rossman fold, 3-layer (ABA) sandwich, structural genomics, J center for structural genomics, JCSG; HET: MSE; 2.00A {Bacillus halodurans c-125} Length = 243

 Score = 52.5 bits (125), Expect = 4e-08
 Identities = 25/187 (13%), Positives = 61/187 (32%), Gaps = 40/187 (21%)

Query: 55  GTIFFTGVGKSGFVANKISQTLISLGIKSGFLNPLDALHGDIGI---------------- 98
           G  +  G G S  +A +I      L + +  L P   LH                     
Sbjct: 43  GRFYVFGSGHSHMIAEEIYNRAGGLALVTAILPPELMLHERPNKSTYLERIEGLSKSYLK 102

Query: 99  ---LSSDDILVMFSKSGNTEELLKVVPCAKAKGAYLVSVTSVE-----------GNALAA 144
              +++ D++++ S SG     +++   ++  GA ++++TS++           G  L  
Sbjct: 103 LHQVTNKDVIMIISNSGRNTVPVEMAIESRNIGAKVIAMTSMKHSQKVTSRHKSGKKLYE 162

Query: 145 VCD--MNVHLPVERELCPFD-----LAPVTSTAIQMVFGDTV--AIAMMGARNLTRDEY- 194
             D  ++   PV                 + +    +    +   + ++  +      + 
Sbjct: 163 YADVVLDNGAPVGDAGFQIANSEIYSGATSDSIGCFLAQALIVETLHLLVQQGFEPPVFK 222

Query: 195 AANHPAG 201
           ++N    
Sbjct: 223 SSNVDGA 229

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 50.6 bits (120), Expect = 5e-07
 Identities = 54/360 (15%), Positives = 116/360 (32%), Gaps = 104/360 (28%)

Query: 9   DLLPH-----------KVSENTLLDLFKSQQ-DHLNYFFQHLSLPHTLTFTQTLLKC--- 53
           D+L             K  ++    +   ++ DH+      +     ++ T  L      
Sbjct: 20  DILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHI------IMSKDAVSGTLRLFWTLLS 73

Query: 54  RGT----IFFTGVGKS--GFVANKIS-QTLISLGIKSGFLNPLDALHGDIGILSSDDI-- 104
           +       F   V +    F+ + I  +      +   ++   D L+ D  + +  ++  
Sbjct: 74  KQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSR 133

Query: 105 LVMFSKSGNTEELLKVVPCAKAKGAYLVSVTSVEG------NALAA-VC---------DM 148
           L  + K    + LL++ P        ++    ++G        +A  VC         D 
Sbjct: 134 LQPYLKL--RQALLELRP-----AKNVL----IDGVLGSGKTWVALDVCLSYKVQCKMDF 182

Query: 149 NVH-LPVERELCPFD-LAPVTSTAIQMVFGDTVAIAMMGARNLT-RDEYAANHPAGRIGK 205
            +  L ++    P   L  +     Q+              N T R ++++N    RI  
Sbjct: 183 KIFWLNLKNCNSPETVLEMLQKLLYQID------------PNWTSRSDHSSNIKL-RI-H 228

Query: 206 SLIFKVQDVMKPQKELPVCKEGDLIMD-----QLVELTSKGCGCLL------VID----- 249
           S+  +++ ++K  K    C    L++      +     +  C  LL      V D     
Sbjct: 229 SIQAELRRLLK-SKPYENCL---LVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAA 284

Query: 250 -----EEYHLIGTFTDGDLRRTL-KASGEGIFKLTVGEMCNRSPRTIGPDAMAVEAMQKM 303
                   H   T T  +++  L K        L   E+   +PR +   ++  E+++  
Sbjct: 285 TTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPR-EVLTTNPRRL---SIIAESIRDG 340

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 46.0 bits (108), Expect = 1e-05
 Identities = 47/315 (14%), Positives = 78/315 (24%), Gaps = 106/315 (33%)

Query: 3   SLPLTLDLLPHKVSEN---------TLLDLFKSQQDHLNYFFQHLSLPHTL--------- 44
           ++   L  L +++  N          +     S Q  L    +     + L         
Sbjct: 197 TVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNA 256

Query: 45  ----TFTQTLLKCRGTIFFTGVGKSGFVANKISQTLISLGIKSGFLNPLDALHGDIGILS 100
                F    L C+  I  T   K   V +              FL+     H     +S
Sbjct: 257 KAWNAFN---LSCK--ILLTTRFKQ--VTD--------------FLSAATTTH-----IS 290

Query: 101 SDDILVMFSKSGNTEELL-KVVPCAKAKGAYLVSVTSVEGNALAAVCDMNVHLPVERELC 159
            D   +  +     + LL K + C                            LP  RE+ 
Sbjct: 291 LDHHSMTLTPD-EVKSLLLKYLDCRPQD------------------------LP--REVL 323

Query: 160 ---PFDLA---------PVTSTAIQMVFGDTVAIAM-MGARNLTRDEYAANHPAGRIGKS 206
              P  L+           T    + V  D +   +      L   EY            
Sbjct: 324 TTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMF------DR 377

Query: 207 L-IFKVQDVMKPQKELPVC---KEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGD 262
           L +F       P   L +         +M  + +L       L+    +     T +   
Sbjct: 378 LSVFP-PSAHIPTILLSLIWFDVIKSDVMVVVNKLHKY---SLVEKQPKE---STISIPS 430

Query: 263 LRRTLKASGEGIFKL 277
           +   LK   E  + L
Sbjct: 431 IYLELKVKLENEYAL 445

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 41.4 bits (96), Expect = 3e-04
 Identities = 23/115 (20%), Positives = 35/115 (30%), Gaps = 39/115 (33%)

Query: 3   SLP-LTLDLLPHKVSE----NTLLDLF----KSQQDHL------NYFFQHLSLPHTLT-- 45
           S+P + L+L     +E     +++D +        D L       YF+ H+   H L   
Sbjct: 427 SIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIG--HHLKNI 484

Query: 46  --------FTQTLLKCRGTIFFTGVGKSGFVANKISQTLISLGIKSGFLNPLDAL 92
                   F    L  R            F+  KI     +       LN L  L
Sbjct: 485 EHPERMTLFRMVFLDFR------------FLEQKIRHDSTAWNASGSILNTLQQL 527

>2xbl_A Phosphoheptose isomerase; capsule; HET: M7P PGE PG4; 1.62A {Burkholderia pseudomallei} PDB: 2x3y_A Length = 198

 Score = 45.8 bits (109), Expect = 4e-06
 Identities = 17/56 (30%), Positives = 27/56 (48%)

Query: 101 SDDILVMFSKSGNTEELLKVVPCAKAKGAYLVSVTSVEGNALAAVCDMNVHLPVER 156
             D+L+ +S SG +  +L     AKAKG   V  T   G  +  +CD+ + +P   
Sbjct: 116 EGDVLIGYSTSGKSPNILAAFREAKAKGMTCVGFTGNRGGEMRELCDLLLEVPSAD 171

>1tk9_A Phosphoheptose isomerase 1; lipopolysaccharide biosynthesis, structural genomics, NYSGXRC, LPC1_camje, PSI, protein structure initiative; 2.10A {Campylobacter jejuni} SCOP: c.80.1.3 Length = 188

 Score = 45.8 bits (109), Expect = 4e-06
 Identities = 13/56 (23%), Positives = 27/56 (48%)

Query: 101 SDDILVMFSKSGNTEELLKVVPCAKAKGAYLVSVTSVEGNALAAVCDMNVHLPVER 156
             D+L+  S SG +  +L+ +  AK      + ++   G  +  +CD N+ +P + 
Sbjct: 110 EKDVLIGISTSGKSPNVLEALKKAKELNMLCLGLSGKGGGMMNKLCDHNLVVPSDD 165

>2qrd_G Protein C1556.08C; AMPK, ADP, ATP-binding, kinase, nucleotide-binding, serine/T protein kinase, transferase, CBS domain; HET: ADP ATP; 2.41A {Schizosaccharomyces pombe} PDB: 2qrc_G* 2qr1_G* 2qre_G* 2oox_G* 2ooy_G* Length = 334

 Score = 46.8 bits (111), Expect = 5e-06
 Identities = 21/116 (18%), Positives = 40/116 (34%), Gaps = 8/116 (6%)

Query: 219 KELPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRRTLKASGEGIFKLT 278
             L        + D +  L  K    + +++ E  L+  +   D+   ++        L+
Sbjct: 193 SNLATASMETKVYDVIKMLAEKNISAVPIVNSEGTLLNVYESVDVMHLIQDGDYSNLDLS 252

Query: 279 VGE-MCNRSPR-----TIGPDAMAVEAMQKMESPPSPVQFLPVINRQNILIGIVTL 328
           VGE +  R        T             ++   S V  L V++    L GI++L
Sbjct: 253 VGEALLKRPANFDGVHTCRATDRLDGIFDAIKH--SRVHRLFVVDENLKLEGILSL 306

>2i2w_A Phosphoheptose isomerase; lipopolysaccharide biosynthesis; 1.95A {Escherichia coli} PDB: 2i22_A 1x94_A Length = 212

 Score = 45.0 bits (107), Expect = 1e-05
 Identities = 15/55 (27%), Positives = 31/55 (56%)

Query: 103 DILVMFSKSGNTEELLKVVPCAKAKGAYLVSVTSVEGNALAAVCDMNVHLPVERE 157
           D+L+  S SGN+  ++K +  A+ KG  ++++T  +G  +A   D+ + +P    
Sbjct: 133 DVLLGISTSGNSANVIKAIAAAREKGMKVITLTGKDGGKMAGTADIEIRVPHFGY 187

>3kxr_A Magnesium transporter, putative; cystathionine beta-synthase, Mg2+ transporter, structural GE PSI-2, protein structure initiative; 2.41A {Shewanella oneidensis mr-1} Length = 205

 Score = 44.5 bits (106), Expect = 1e-05
 Identities = 17/86 (19%), Positives = 30/86 (34%), Gaps = 19/86 (22%)

Query: 247 VIDEEYHLIGTFTDGDLRRTLKASGEGIFKLTVGEMCNRSPRTIGPDAMAVEAMQKME-- 304
           ++DE    +GT          K          +  + +   R +  +   ++A + +E  
Sbjct: 93  IVDEADKYLGTVR---RYDIFKHEPH----EPLISLLSEDSRALTANTTLLDAAEAIEHS 145

Query: 305 ---SPPSPVQFLPVINRQNILIGIVT 327
                      LPVI+    LIG VT
Sbjct: 146 REIE-------LPVIDDAGELIGRVT 164

>2j9l_A Chloride channel protein 5; ION channel, ION transport, voltage-gated; HET: ATP; 2.30A {Homo sapiens} SCOP: d.37.1.1 PDB: 2ja3_A* Length = 185

 Score = 43.3 bits (102), Expect = 2e-05
 Identities = 24/150 (16%), Positives = 50/150 (33%), Gaps = 38/150 (25%)

Query: 210 KVQDVMKPQKELPV----CKEGDLIMDQLVELTSKGCGCLLVID--EEYHLIGTFTDGDL 263
              DVMKP++  P+     ++   + D    ++        V+   E   L+G     DL
Sbjct: 12  LAMDVMKPRRNDPLLTVLTQDSMTVEDVETIISETTYSGFPVVVSRESQRLVGFVLRRDL 71

Query: 264 RRTLK-----------------------ASGEGIFKLTVGEMCNRSPRTIGPDA---MAV 297
             +++                               L +  + + SP T+       + V
Sbjct: 72  IISIENARKKQDGVVSTSIIYFTEHSPPLPPYTPPTLKLRNILDLSPFTVTDLTPMEIVV 131

Query: 298 EAMQKMESPPSPVQFLPVINRQNILIGIVT 327
           +  +K+      ++   V +    L+GI+T
Sbjct: 132 DIFRKLG-----LRQCLVTHN-GRLLGIIT 155

>2a3n_A Putative glucosamine-fructose-6-phosphate aminotr; structural genomics, joint center for structural genomics; HET: MSE; 1.23A {Salmonella typhimurium} Length = 355

 Score = 43.4 bits (103), Expect = 6e-05
 Identities = 15/50 (30%), Positives = 28/50 (56%)

Query: 98  ILSSDDILVMFSKSGNTEELLKVVPCAKAKGAYLVSVTSVEGNALAAVCD 147
            L+ D +++  SKSG+T+E + +    KA+G  +V++T    + LA    
Sbjct: 99  RLNKDSVVITLSKSGDTKESVAIAEWCKAQGIRVVAITKNADSPLAQAAT 148

>2yva_A DNAA initiator-associating protein DIAA; intermolecular disulfide bonding, putative phosphosugar BIND protein, DNAA binding protein; 1.85A {Escherichia coli} Length = 196

 Score = 41.2 bits (97), Expect = 2e-04
 Identities = 18/72 (25%), Positives = 33/72 (45%), Gaps = 12/72 (16%)

Query: 103 DILVMFSKSGNTEELLKVVPCAKAKGAYLVSVTSVEGNALAAVCDMN-VHLPVERELCPF 161
           D+L+  S  GN+ +++K V  A  +   +V++T  +G  LA +     V + +       
Sbjct: 111 DVLLAISTRGNSRDIVKAVEAAVTRDMTIVALTGYDGGELAGLLGPQDVEIRI------- 163

Query: 162 DLAPVTSTA-IQ 172
              P   +A IQ
Sbjct: 164 ---PSHRSARIQ 172

>1x92_A APC5045, phosphoheptose isomerase; midwest centre for structural genomics, SIS domain, A/B protein, lipopolysaccharide biosynthesis, PSI; HET: M7P; 2.30A {Pseudomonas aeruginosa} SCOP: c.80.1.3 PDB: 3bjz_A Length = 199

 Score = 40.8 bits (96), Expect = 2e-04
 Identities = 18/74 (24%), Positives = 34/74 (45%), Gaps = 12/74 (16%)

Query: 101 SDDILVMFSKSGNTEELLKVVPCAKAKGAYLVSVTSVEGNALAAVCDMN-VHLPVERELC 159
             D+L+  S SGN+  +++ +  A  +   +V++T  +G  +A++     V + V     
Sbjct: 113 PGDVLLAISTSGNSANVIQAIQAAHDREMLVVALTGRDGGGMASLLLPEDVEIRV----- 167

Query: 160 PFDLAPVTSTA-IQ 172
                P   TA IQ
Sbjct: 168 -----PSKITARIQ 176

>3trj_A Phosphoheptose isomerase; lipopolysaccharide biosynthesis; 2.80A {Francisella tularensis subsp} Length = 201

 Score = 40.8 bits (96), Expect = 2e-04
 Identities = 15/57 (26%), Positives = 30/57 (52%), Gaps = 3/57 (5%)

Query: 103 DILVMFSKSGNTEELLKVVPCAKAKGAYLVSVTSVEGNALAAVC---DMNVHLPVER 156
           DIL++ + SG++E +L  V  A      ++++T   G AL  +    D+ + +P + 
Sbjct: 116 DILLVITTSGDSENILSAVEEAHDLEMKVIALTGGSGGALQNMYNTDDIELRVPSDN 172

>2oux_A Magnesium transporter; 10001B, structural genomics, PSI-2, P structure initiative, nysgxrc; 2.16A {Enterococcus faecalis} SCOP: a.118.26.1 d.37.1.1 Length = 286

 Score = 41.1 bits (97), Expect = 3e-04
 Identities = 17/86 (19%), Positives = 35/86 (40%), Gaps = 19/86 (22%)

Query: 247 VIDEEYHLIGTFTDGDLRRTLKASGEGIFKLTVGEMCNRSPRTIGPDAMAVEAMQKME-- 304
           V+D+E HL+G  +   LR  +    +      + ++ N    ++       +  Q +   
Sbjct: 178 VVDQENHLVGVIS---LRDLIVNDDD----TLIADILNERVISVHVGDDQEDVAQTIRDY 230

Query: 305 ---SPPSPVQFLPVINRQNILIGIVT 327
              +       +PV +  + L+GIVT
Sbjct: 231 DFLA-------VPVTDYDDHLLGIVT 249

>2yvy_A MGTE, Mg2+ transporter MGTE; membrane protein, transport protein; 2.30A {Thermus thermophilus} PDB: 2yvz_A Length = 278

 Score = 41.0 bits (97), Expect = 3e-04
 Identities = 22/86 (25%), Positives = 33/86 (38%), Gaps = 19/86 (22%)

Query: 247 VIDEEYHLIGTFTDGDLRRTLKASGEGIFKLTVGEMCNRSPRTIGPDAMAVEAMQKME-- 304
           V+DE+  L G  +   LR  + A         V E+ N     +  D    E  + M   
Sbjct: 176 VVDEKGRLKGVLS---LRDLIVADPR----TRVAEIMNPKVVYVRTDTDQEEVARLMADY 228

Query: 305 ---SPPSPVQFLPVINRQNILIGIVT 327
                      LPV++ +  L+GIVT
Sbjct: 229 DFTV-------LPVVDEEGRLVGIVT 247

>2zy9_A Mg2+ transporter MGTE; membrane protien, metal transport; 2.94A {Thermus thermophilus} PDB: 2yvx_A Length = 473

 Score = 39.9 bits (94), Expect = 8e-04
 Identities = 22/86 (25%), Positives = 33/86 (38%), Gaps = 19/86 (22%)

Query: 247 VIDEEYHLIGTFTDGDLRRTLKASGEGIFKLTVGEMCNRSPRTIGPDAMAVEAMQKME-- 304
           V+DE+  L G  +   LR  + A         V E+ N     +  D    E  + M   
Sbjct: 196 VVDEKGRLKGVLS---LRDLIVADPR----TRVAEIMNPKVVYVRTDTDQEEVARLMADY 248

Query: 305 ---SPPSPVQFLPVINRQNILIGIVT 327
                      LPV++ +  L+GIVT
Sbjct: 249 DFTV-------LPVVDEEGRLVGIVT 267

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	336
3fxa_A	201	SIS domain protein; structural genomics, joint cen	100.0
3etn_A	220	Putative phosphosugar isomerase involved in capsu	100.0
3sho_A	187	Transcriptional regulator, RPIR family; structural	99.96
2xhz_A	183	KDSD, YRBH, arabinose 5-phosphate isomerase; lipop	99.96
1m3s_A	186	Hypothetical protein YCKF; structural genomics, PS	99.96
1vim_A	200	Hypothetical protein AF1796; structural genomics,	99.96
1jeo_A	180	MJ1247, hypothetical protein MJ1247; RUMP pathway,	99.95
2yva_A	196	DNAA initiator-associating protein DIAA; intermole	99.92
1x92_A	199	APC5045, phosphoheptose isomerase; midwest centre	99.92
2xbl_A	198	Phosphoheptose isomerase; capsule; HET: M7P PGE PG	99.89
3trj_A	201	Phosphoheptose isomerase; lipopolysaccharide biosy	99.89
3k2v_A	149	Putative D-arabinose 5-phosphate isomerase; KPSF-l	99.88
1tk9_A	188	Phosphoheptose isomerase 1; lipopolysaccharide bio	99.88
3cvj_A	243	Putative phosphoheptose isomerase; rossman fold, 3	99.88
3knz_A	366	Putative sugar binding protein; structural genomic	99.87
2i2w_A	212	Phosphoheptose isomerase; lipopolysaccharide biosy	99.87
1j5x_A	342	Glucosamine-6-phosphate deaminase; structural geno	99.87
3hba_A	334	Putative phosphosugar isomerase; structural genomi	99.86
1nri_A	306	Hypothetical protein HI0754; structural genomics,	99.86
3fj1_A	344	Putative phosphosugar isomerase; YP_167080.1, stru	99.86
1moq_A	368	Glucosamine 6-phosphate synthase; glutamine amidot	99.85
3tbf_A	372	Glucosamine--fructose-6-phosphate aminotransferas	99.85
2a3n_A	355	Putative glucosamine-fructose-6-phosphate aminotr;	99.85
2poc_A	367	D-fructose-6- PH, isomerase domain of glutamine-fr	99.85
2zj3_A	375	Glucosamine--fructose-6-phosphate aminotransferase	99.84
3k6e_A	156	CBS domain protein; streptococcus pneumoniae TIGR4	99.84
2aml_A	373	SIS domain protein; 46906266, LMO0035 protein, str	99.83
3g68_A	352	Putative phosphosugar isomerase; SIS domain, doubl	99.83
3c3j_A	384	Putative tagatose-6-phosphate ketose/aldose isome;	99.82
3hf7_A	130	Uncharacterized CBS-domain protein; CSB-domain PAI	99.82
3fkj_A	347	Putative phosphosugar isomerases; structural genom	99.81
4esy_A	170	CBS domain containing membrane protein; structural	99.81
2bpl_A	608	Glucosamine--fructose-6-phosphate aminotransferase	99.81
3i8n_A	130	Uncharacterized protein VP2912; APC64273.1, vibrio	99.81
3lv9_A	148	Putative transporter; CBS domain, PSI, MCSG, struc	99.81
3eua_A	329	Putative fructose-aminoacid-6-phosphate deglycase;	99.81
3nqr_A	127	Magnesium and cobalt efflux protein CORC; structur	99.8
3kpb_A	122	Uncharacterized protein MJ0100; CBS domain, S-aden	99.8
3fhm_A	165	Uncharacterized protein ATU1752; CBS domain, proka	99.8
3jtf_A	129	Magnesium and cobalt efflux protein; CBS domain, C	99.8
3lfr_A	136	Putative metal ION transporter; CBS, AMP, PSI, MCS	99.79
3lhh_A	172	CBS domain protein; structural genomics, PSI-2, pr	99.79
2e5f_A	325	Hypothetical protein PH0510; structural genomics,	99.79
3lqn_A	150	CBS domain protein; csgid, structural genomics, un	99.79
3ctu_A	156	CBS domain protein; structural genomics, PSI-2, pr	99.78
1pbj_A	125	Hypothetical protein; structural genomics, domain,	99.78
3oco_A	153	Hemolysin-like protein containing CBS domains; str	99.78
2rih_A	141	Conserved protein with 2 CBS domains; bateman doma	99.77
3gby_A	128	Uncharacterized protein CT1051; CBS domain, struct	99.77
3odp_A	393	Putative tagatose-6-phosphate ketose/aldose isome;	99.77
2rc3_A	135	CBS domain; in SITU proteolysis, BR, structural ge	99.77
4gqw_A	152	CBS domain-containing protein CBSX1, chloroplasti;	99.76
2p9m_A	138	Hypothetical protein MJ0922; structural genomics,	99.76
1y5h_A	133	Hypothetical protein RV2626C; CBS domain, unknown	99.76
3oi8_A	156	Uncharacterized protein; structural genomics, PSI-	99.76
3ocm_A	173	Putative membrane protein; structural genomics, PS	99.76
2o16_A	160	Acetoin utilization protein ACUB, putative; struct	99.76
3sl7_A	180	CBS domain-containing protein CBSX2; CBS-PAIR prot	99.76
2ef7_A	133	Hypothetical protein ST2348; CBS-domain, structura	99.76
1pvm_A	184	Conserved hypothetical protein TA0289; structural	99.76
2yzi_A	138	Hypothetical protein PH0107; sheet/helix/sheet/she	99.75
1yav_A	159	Hypothetical protein BSU14130; cystathionine beta	99.75
3fv6_A	159	YQZB protein; CBS domain dimer, metabolism regulat	99.75
4fry_A	157	Putative signal-transduction protein with CBS DOM;	99.74
2nyc_A	144	Nuclear protein SNF4; bateman2 domain, AMP kinase,	99.74
1o50_A	157	CBS domain-containing predicted protein TM0935; CB	99.74
2emq_A	157	Hypothetical conserved protein; CBS domains, NPPSF	99.73
2uv4_A	152	5'-AMP-activated protein kinase subunit gamma-1; t	99.73
3i0z_A	389	Putative tagatose-6-phosphate ketose/aldose isome;	99.73
3kxr_A	205	Magnesium transporter, putative; cystathionine bet	99.72
2pfi_A	164	Chloride channel protein CLC-Ka; cystathionine bet	99.7
2j9l_A	185	Chloride channel protein 5; ION channel, ION trans	99.7
3l2b_A	245	Probable manganase-dependent inorganic pyrophospha	99.69
1vr9_A	213	CBS domain protein/ACT domain protein; structural	99.67
3t4n_C	323	Nuclear protein SNF4; CBS domain, nucleotide bindi	99.66
2d4z_A	250	Chloride channel protein; CLC chloride channel cyt	99.64
2oux_A	286	Magnesium transporter; 10001B, structural genomics	99.64
3ddj_A	296	CBS domain-containing protein; structural genomics	99.64
2yvy_A	278	MGTE, Mg2+ transporter MGTE; membrane protein, tra	99.63
3org_A	632	CMCLC; transporter, transport protein; 3.50A {Cyan	99.63
2qrd_G	334	Protein C1556.08C; AMPK, ADP, ATP-binding, kinase,	99.61
3kh5_A	280	Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, a	99.61
2yzq_A	282	Putative uncharacterized protein PH1780; sheet/hel	99.6
3kh5_A	280	Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, a	99.6
3ddj_A	296	CBS domain-containing protein; structural genomics	99.6
3jx9_A	170	Putative phosphoheptose isomerase; YP_001815198.1,	99.58
1tzb_A	302	Glucose-6-phosphate isomerase, conjectural; enzyme	99.58
3pc3_A	527	CG1753, isoform A; CBS, synthase, PLP, heme, amino	99.58
2zy9_A	473	Mg2+ transporter MGTE; membrane protien, metal tra	99.54
3usb_A	511	Inosine-5'-monophosphate dehydrogenase; structural	99.53
2yzq_A	282	Putative uncharacterized protein PH1780; sheet/hel	99.53
2v8q_E	330	5'-AMP-activated protein kinase subunit gamma-1; p	99.51
2v8q_E	330	5'-AMP-activated protein kinase subunit gamma-1; p	99.5
3t4n_C	323	Nuclear protein SNF4; CBS domain, nucleotide bindi	99.5
4fxs_A	496	Inosine-5'-monophosphate dehydrogenase; structural	99.48
2qrd_G	334	Protein C1556.08C; AMPK, ADP, ATP-binding, kinase,	99.43
1zfj_A	491	Inosine monophosphate dehydrogenase; IMPDH, CBS do	99.43
4avf_A	490	Inosine-5'-monophosphate dehydrogenase; oxidoreduc	99.42
1me8_A	503	Inosine-5'-monophosphate dehydrogenase; alpha beta	99.41
1vrd_A	494	Inosine-5'-monophosphate dehydrogenase; TM1347, st	99.4
4af0_A	556	Inosine-5'-monophosphate dehydrogenase; oxidoreduc	99.38
1jcn_A	514	Inosine monophosphate dehydrogenase I; IMPD, IMPDH	99.27
2cu0_A	486	Inosine-5'-monophosphate dehydrogenase; structural	99.21
3ghd_A	70	A cystathionine beta-synthase domain protein FUSE	99.18
2q8n_A	460	Glucose-6-phosphate isomerase; TM1385, structural	99.11
3tbf_A	372	Glucosamine--fructose-6-phosphate aminotransferas	98.9
3fio_A	70	A cystathionine beta-synthase domain protein fused	98.88
1zzg_A	415	Glucose-6-phosphate isomerase; structural genomics	98.83
1moq_A	368	Glucosamine 6-phosphate synthase; glutamine amidot	98.83
2e5f_A	325	Hypothetical protein PH0510; structural genomics,	98.81
2zj3_A	375	Glucosamine--fructose-6-phosphate aminotransferase	98.8
1vr9_A	213	CBS domain protein/ACT domain protein; structural	98.76
2bpl_A	608	Glucosamine--fructose-6-phosphate aminotransferase	98.71
3odp_A	393	Putative tagatose-6-phosphate ketose/aldose isome;	98.7
2poc_A	367	D-fructose-6- PH, isomerase domain of glutamine-fr	98.67
3knz_A	366	Putative sugar binding protein; structural genomic	98.61
4esy_A	170	CBS domain containing membrane protein; structural	98.59
3fj1_A	344	Putative phosphosugar isomerase; YP_167080.1, stru	98.58
3i0z_A	389	Putative tagatose-6-phosphate ketose/aldose isome;	98.57
3hba_A	334	Putative phosphosugar isomerase; structural genomi	98.56
3g68_A	352	Putative phosphosugar isomerase; SIS domain, doubl	98.54
3fkj_A	347	Putative phosphosugar isomerases; structural genom	98.5
2aml_A	373	SIS domain protein; 46906266, LMO0035 protein, str	98.5
3ghd_A	70	A cystathionine beta-synthase domain protein FUSE	98.44
1j5x_A	342	Glucosamine-6-phosphate deaminase; structural geno	98.42
1b0z_A	445	Protein (phosphoglucose isomerase); autocrinefacto	98.4
3kpb_A	122	Uncharacterized protein MJ0100; CBS domain, S-aden	98.39
3gby_A	128	Uncharacterized protein CT1051; CBS domain, struct	98.35
3jtf_A	129	Magnesium and cobalt efflux protein; CBS domain, C	98.34
3hf7_A	130	Uncharacterized CBS-domain protein; CSB-domain PAI	98.34
4gqw_A	152	CBS domain-containing protein CBSX1, chloroplasti;	98.33
4fry_A	157	Putative signal-transduction protein with CBS DOM;	98.32
3nqr_A	127	Magnesium and cobalt efflux protein CORC; structur	98.32
2ef7_A	133	Hypothetical protein ST2348; CBS-domain, structura	98.32
2wu8_A	549	Glucose-6-phosphate isomerase; gluconeogenesis, 5-	98.32
3i8n_A	130	Uncharacterized protein VP2912; APC64273.1, vibrio	98.32
3sl7_A	180	CBS domain-containing protein CBSX2; CBS-PAIR prot	98.31
1o50_A	157	CBS domain-containing predicted protein TM0935; CB	98.31
3k6e_A	156	CBS domain protein; streptococcus pneumoniae TIGR4	98.3
3fio_A	70	A cystathionine beta-synthase domain protein fused	98.28
3eua_A	329	Putative fructose-aminoacid-6-phosphate deglycase;	98.28
3lhh_A	172	CBS domain protein; structural genomics, PSI-2, pr	98.28
3fv6_A	159	YQZB protein; CBS domain dimer, metabolism regulat	98.28
3lv9_A	148	Putative transporter; CBS domain, PSI, MCSG, struc	98.28
3kxr_A	205	Magnesium transporter, putative; cystathionine bet	98.27
2rc3_A	135	CBS domain; in SITU proteolysis, BR, structural ge	98.27
2a3n_A	355	Putative glucosamine-fructose-6-phosphate aminotr;	98.27
3oco_A	153	Hemolysin-like protein containing CBS domains; str	98.26
3lfr_A	136	Putative metal ION transporter; CBS, AMP, PSI, MCS	98.26
2p9m_A	138	Hypothetical protein MJ0922; structural genomics,	98.25
3k2v_A	149	Putative D-arabinose 5-phosphate isomerase; KPSF-l	98.25
2nyc_A	144	Nuclear protein SNF4; bateman2 domain, AMP kinase,	98.25
3l2b_A	245	Probable manganase-dependent inorganic pyrophospha	98.24
3lqn_A	150	CBS domain protein; csgid, structural genomics, un	98.24
3fhm_A	165	Uncharacterized protein ATU1752; CBS domain, proka	98.23
1pbj_A	125	Hypothetical protein; structural genomics, domain,	98.21
2yzi_A	138	Hypothetical protein PH0107; sheet/helix/sheet/she	98.2
2uv4_A	152	5'-AMP-activated protein kinase subunit gamma-1; t	98.19
3ctu_A	156	CBS domain protein; structural genomics, PSI-2, pr	98.19
2cxn_A	557	Glucose-6-phosphate isomerase; 1.40A {Mus musculus	98.18
2o16_A	160	Acetoin utilization protein ACUB, putative; struct	98.14
2rih_A	141	Conserved protein with 2 CBS domains; bateman doma	98.13
3c3j_A	384	Putative tagatose-6-phosphate ketose/aldose isome;	98.12
2pfi_A	164	Chloride channel protein CLC-Ka; cystathionine bet	98.12
2emq_A	157	Hypothetical conserved protein; CBS domains, NPPSF	98.11
1y5h_A	133	Hypothetical protein RV2626C; CBS domain, unknown	98.1
3oi8_A	156	Uncharacterized protein; structural genomics, PSI-	98.09
1yav_A	159	Hypothetical protein BSU14130; cystathionine beta	98.08
1pvm_A	184	Conserved hypothetical protein TA0289; structural	98.06
2j9l_A	185	Chloride channel protein 5; ION channel, ION trans	98.04
2d4z_A	250	Chloride channel protein; CLC chloride channel cyt	98.03
2oux_A	286	Magnesium transporter; 10001B, structural genomics	98.01
3ocm_A	173	Putative membrane protein; structural genomics, PS	98.0
2o2c_A	613	GPI, glucose-6-phosphate isomerase, glycosomal, PG	97.97
2yvy_A	278	MGTE, Mg2+ transporter MGTE; membrane protein, tra	97.96
3usb_A	511	Inosine-5'-monophosphate dehydrogenase; structural	97.9
1me8_A	503	Inosine-5'-monophosphate dehydrogenase; alpha beta	97.86
2zy9_A	473	Mg2+ transporter MGTE; membrane protien, metal tra	97.78
1t10_A	605	GPI, glucose-6-phosphate isomerase, PGI, phosphohe	97.77
3ff1_A	446	Glucose-6-phosphate isomerase; alpha beta, rossman	97.74
3pc3_A	527	CG1753, isoform A; CBS, synthase, PLP, heme, amino	97.59
4fxs_A	496	Inosine-5'-monophosphate dehydrogenase; structural	97.43
3org_A	632	CMCLC; transporter, transport protein; 3.50A {Cyan	97.43
1zfj_A	491	Inosine monophosphate dehydrogenase; IMPDH, CBS do	97.29
4avf_A	490	Inosine-5'-monophosphate dehydrogenase; oxidoreduc	97.19
4af0_A	556	Inosine-5'-monophosphate dehydrogenase; oxidoreduc	97.1
1vrd_A	494	Inosine-5'-monophosphate dehydrogenase; TM1347, st	97.09
4em6_D	553	Glucose-6-phosphate isomerase; GPI, phosphoglucose	96.94
3ljk_A	543	Glucose-6-phosphate isomerase; structural genomics	96.92
2cu0_A	486	Inosine-5'-monophosphate dehydrogenase; structural	96.9
3ujh_A	567	Glucose-6-phosphate isomerase; ssgcid, structural	96.89
1tzb_A	302	Glucose-6-phosphate isomerase, conjectural; enzyme	96.78
1jcn_A	514	Inosine monophosphate dehydrogenase I; IMPD, IMPDH	96.7
3qki_A	597	Glucose-6-phosphate isomerase; structural genomics	96.51
3hjb_A	574	Glucose-6-phosphate isomerase; PGI, IDP01329, gluc	96.24
2zkq_b	295	40S ribosomal protein SA; protein-RNA complex, 40S	96.2
3bch_A	253	40S ribosomal protein SA; laminin receptor, P40 ri	95.98
1vi6_A	208	30S ribosomal protein S2P; structural genomics, ri	95.81
3iz6_A	305	40S ribosomal protein SA (S2P); eukaryotic ribosom	95.75
3j20_B	202	30S ribosomal protein S2P; archaea, archaeal, KINK	95.43
2xzm_B	241	RPS0E; ribosome, translation; 3.93A {Tetrahymena t	95.24
3u5c_A	252	40S ribosomal protein S0-A; translation, ribosome,	94.79
1wiw_A	290	Glucose-6-phosphate isomerase like protein; riken	94.65
3bbn_B	231	Ribosomal protein S2; small ribosomal subunit, spi	93.41
2nap_A	723	Protein (periplasmic nitrate reductase); nitrogeno	91.94
2iv2_X	715	Formate dehydrogenase H; oxidoreductase, 4Fe-4S, a	91.63
3ml1_A	802	NAPA, periplasmic nitrate reductase; heterodimer,	89.64
2d59_A	144	Hypothetical protein PH1109; COA binding, structur	87.77
1h0h_A	977	Formate dehydrogenase (large subunit); tungsten se	86.08
2qip_A	165	Protein of unknown function VPA0982; APC85975, vib	85.47
1kyq_A	274	Met8P, siroheme biosynthesis protein Met8; homodim	85.26
2e7z_A	727	Acetylene hydratase AHY; tungstoprotein, DMSO redu	85.23
2vpz_A	765	Thiosulfate reductase; oxidoreductase, molybdopter	85.18
2vqe_B	256	30S ribosomal protein S2; tRNA-binding, rRNA-bindi	84.54
1kqf_A	1015	FDH-N alpha, formate dehydrogenase, nitrate-induci	82.23
3ff4_A	122	Uncharacterized protein; structural genomics, PSI-	80.01

>3fxa_A SIS domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.60A {Listeria monocytogenes str}

Probab=100.00  E-value=1.5e-32  Score=231.38  Aligned_cols=195  Identities=28%  Similarity=0.519  Sum_probs=176.7

Q ss_pred             CcchHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHcCCCeEEEEeccchHHHHHHHHHHHHhcCCeeeecCCccccc
Q 019775           14 KVSENTLLDLFKSQQDHLNYFFQHLSLPHTLTFTQTLLKCRGTIFFTGVGKSGFVANKISQTLISLGIKSGFLNPLDALH   93 (336)
Q Consensus        14 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~i~~a~~~I~i~G~G~s~~~a~~~~~~l~~~g~~~~~~~~~~~~~   93 (336)
                      .+..++++++++.+.++++++.+.++.+.++++++.|.+++++||++|.|.|+.+|.+++++|.++|+++..+++.+.+.
T Consensus         5 ~~~~~i~~~~~~~~~~~l~~t~~~l~~~~i~~~~~~i~~a~~~I~i~G~G~S~~~A~~~~~~l~~~g~~~~~~~~~~~~~   84 (201)
T 3fxa_A            5 QAILDNIHQTWQEEANAISRLPEVTSEEALVKTVEKIAECTGKIVVAGCGTSGVAAKKLVHSFNCIERPAVFLTPSDAVH   84 (201)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTHHHHSCHHHHHHHHHHHHHCSSCEEEECCTHHHHHHHHHHHHHHHTTCCEEECCHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcEEEEEecHHHHHHHHHHHHHHhcCCcEEEeCchHHHh
Confidence            35568899999999999999999999999999999999992299999999999999999999999999999999888777


Q ss_pred             cccCCCCCCcEEEEEeCCCCcHHHHHHHHHHHHcCCeEEEEeCCCCCccccccCEEEEcCCCcccCCCCCCChhHHHHHH
Q 019775           94 GDIGILSSDDILVMFSKSGNTEELLKVVPCAKAKGAYLVSVTSVEGNALAAVCDMNVHLPVERELCPFDLAPVTSTAIQM  173 (336)
Q Consensus        94 ~~~~~~~~~dlvi~iS~sG~~~~~~~~~~~ak~~g~~vi~IT~~~~s~l~~~ad~~i~~~~~~~~~~~~~~~~~s~~~~~  173 (336)
                      .....++++|++|+||+||++++++++++.||++|+++|+||++.++|++++||++|.++...+...+...++.|.++++
T Consensus        85 ~~~~~~~~~dvvI~iS~sG~t~~~~~~~~~ak~~g~~vi~IT~~~~s~l~~~ad~~l~~~~~~e~~~~~~~~~~s~~~~l  164 (201)
T 3fxa_A           85 GTLGVLQKEDILILISKGGNTGELLNLIPACKTKGSTLIGVTENPDSVIAKEADIFFPVSVSKEPDPFNMLATASTMAVI  164 (201)
T ss_dssp             TGGGGCCTTCEEEEECSSSCCHHHHTTHHHHHHHTCEEEEEESCTTSHHHHHCSEEEECCCSCCCSTTSCSCHHHHHHHH
T ss_pred             hhhhcCCCCCEEEEEeCCCCCHHHHHHHHHHHHcCCeEEEEECCCCChhHHhCCEEEEcCCCccccccCCCchHHHHHHH
Confidence            77788999999999999999999999999999999999999999999999999999999987654455667899999999


Q ss_pred             HHHHHHHHHHHhhcCCChHHHhhcCCCCchhhhhh
Q 019775          174 VFGDTVAIAMMGARNLTRDEYAANHPAGRIGKSLI  208 (336)
Q Consensus       174 ~l~d~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  208 (336)
                      +++|+|+..++++++.++++++++||.|.+++.++
T Consensus       165 ~~~d~L~~~l~~~~g~~~~~~~~~H~~g~~g~~l~  199 (201)
T 3fxa_A          165 ASFDAVIVCLMTYMNYTKEQFSVIHPGGAVGNKLL  199 (201)
T ss_dssp             HHHHHHHHHHHHHTTCCHHHHHHHCCCCC------
T ss_pred             HHHHHHHHHHHHhcCCCHHHHhhcCCCcHHHHHhh
Confidence            99999999999999999999999999999998754

>3etn_A Putative phosphosugar isomerase involved in capsu formation; YP_209877.1; HET: MSE CMK; 1.70A {Bacteroides fragilis nctc 9343}

Probab=100.00  E-value=4.4e-32  Score=231.30  Aligned_cols=198  Identities=26%  Similarity=0.427  Sum_probs=176.1

Q ss_pred             cCCCCcchHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHc-----CCCeEEEEeccchHHHHHHHHHHHHhcCCeee
Q 019775           10 LLPHKVSENTLLDLFKSQQDHLNYFFQHLSLPHTLTFTQTLLK-----CRGTIFFTGVGKSGFVANKISQTLISLGIKSG   84 (336)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~i~~-----a~~~I~i~G~G~s~~~a~~~~~~l~~~g~~~~   84 (336)
                      +.+..+..+.++++.+...+.++++.+.++.+.++++++.|.+     + ++||++|.|.|+.+|.+++++|.++|+++.
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~~i~~t~~~ld~~~i~~~~~~i~~~a~~~a-~~I~i~G~G~S~~~A~~~~~~l~~lg~~~~   89 (220)
T 3etn_A           11 HHENLYFQGMIESIQELLQKEAQAVLNIPVTDAYEKAVELIVEQIHRKK-GKLVTSGMGKAGQIAMNIATTFCSTGIPSV   89 (220)
T ss_dssp             --------CHHHHHHHHHHHHHHHHHTCCCCTHHHHHHHHHHHHTTTTC-CCEEEECSHHHHHHHHHHHHHHHHTTCCEE
T ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhHhhccC-CEEEEEEecHHHHHHHHHHHHHHhcCCcEE
Confidence            3444567788999999999999999999999999999999999     8 699999999999999999999999999999


Q ss_pred             ecCCccccccccCCCCCCcEEEEEeCCCCcHHHHHHHHHHHH--cCCeEEEEeCCCCCccccccCEEEEcCCCcccCCCC
Q 019775           85 FLNPLDALHGDIGILSSDDILVMFSKSGNTEELLKVVPCAKA--KGAYLVSVTSVEGNALAAVCDMNVHLPVERELCPFD  162 (336)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~dlvi~iS~sG~~~~~~~~~~~ak~--~g~~vi~IT~~~~s~l~~~ad~~i~~~~~~~~~~~~  162 (336)
                      .+++.+.+......++++|++|+||+||++++++++++.||+  +|+++|+||++.++|++++||++|.++...+..+.+
T Consensus        90 ~~~~~~~~~~~~~~~~~~DlvI~iS~SG~t~~~i~~~~~ak~~~~Ga~vI~IT~~~~s~La~~aD~~l~~~~~~e~~~~~  169 (220)
T 3etn_A           90 FLHPSEAQHGDLGILQENDLLLLISNSGKTREIVELTQLAHNLNPGLKFIVITGNPDSPLASESDVCLSTGHPAEVCTLG  169 (220)
T ss_dssp             ECCTTGGGBTGGGGCCTTCEEEEECSSSCCHHHHHHHHHHHHHCTTCEEEEEESCTTSHHHHHSSEEEECCCCCCCSTTS
T ss_pred             EeCCHHHHHhhhccCCCCCEEEEEcCCCCCHHHHHHHHHHHhcCCCCeEEEEECCCCChhHHhCCEEEEcCCCccccccc
Confidence            999888888778889999999999999999999999999999  999999999999999999999999999876544566


Q ss_pred             CCChhHHHHHHHHHHHHHHHHHhhcCCChHHHhhcCCCCchhhhhh
Q 019775          163 LAPVTSTAIQMVFGDTVAIAMMGARNLTRDEYAANHPAGRIGKSLI  208 (336)
Q Consensus       163 ~~~~~s~~~~~~l~d~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  208 (336)
                      ..++.|.+++++++|+|+..++.+++.+++++.++||.|.+++.++
T Consensus       170 ~~~~~S~~~~l~lld~L~~~l~~~~g~~~~~~~~~H~~g~~g~~~~  215 (220)
T 3etn_A          170 MTPTTSTTVMTVIGDILVVQTMKRTEFTIEEYSKRHHGGYLGEKSR  215 (220)
T ss_dssp             CSSSHHHHHHHHHHHHHHHHHHHHHTCCHHHHHTTBCGGGC-----
T ss_pred             ccchHHHHHHHHHHHHHHHHHHHHhCCCHHHHHhcCCCcHHHHHHH
Confidence            6889999999999999999999999999999999999999999854

>3sho_A Transcriptional regulator, RPIR family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 1.80A {Sphaerobacter thermophilus}

Probab=99.96  E-value=6.2e-29  Score=206.93  Aligned_cols=168  Identities=14%  Similarity=0.141  Sum_probs=156.0

Q ss_pred             chHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHcCCCeEEEEeccchHHHHHHHHHHHHhcCCeeeecC-Ccccccc
Q 019775           16 SENTLLDLFKSQQDHLNYFFQHLSLPHTLTFTQTLLKCRGTIFFTGVGKSGFVANKISQTLISLGIKSGFLN-PLDALHG   94 (336)
Q Consensus        16 ~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~i~~a~~~I~i~G~G~s~~~a~~~~~~l~~~g~~~~~~~-~~~~~~~   94 (336)
                      ..++++++++.+.++++++.+.++.+.++++++.|.++ ++||++|.|.|+.+|.+++++|.++|+++..++ +...+..
T Consensus         2 ~~~i~~~~~~~~~~~l~~t~~~l~~~~l~~~~~~i~~a-~~I~i~G~G~S~~~a~~~~~~l~~~g~~~~~~~~~~~~~~~   80 (187)
T 3sho_A            2 RQQLPVQVFTNDIENLNQTLNQTQPEAIEAAVEAICRA-DHVIVVGMGFSAAVAVFLGHGLNSLGIRTTVLTEGGSTLTI   80 (187)
T ss_dssp             GGGHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHC-SEEEEECCGGGHHHHHHHHHHHHHTTCCEEEECCCTHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhC-CEEEEEecCchHHHHHHHHHHHHhcCCCEEEecCCchhHHH
Confidence            46788999999999999999999999999999999999 699999999999999999999999999999998 5666666


Q ss_pred             ccCCCCCCcEEEEEeCCCCcHHHHHHHHHHHHcCCeEEEEeCCCCCccccccCEEEEcCCCcccCCCCCCChhHHHHHHH
Q 019775           95 DIGILSSDDILVMFSKSGNTEELLKVVPCAKAKGAYLVSVTSVEGNALAAVCDMNVHLPVERELCPFDLAPVTSTAIQMV  174 (336)
Q Consensus        95 ~~~~~~~~dlvi~iS~sG~~~~~~~~~~~ak~~g~~vi~IT~~~~s~l~~~ad~~i~~~~~~~~~~~~~~~~~s~~~~~~  174 (336)
                      ....++++|++|+||+||++++++++++.||++|+++|+||++.++|++++||+++.++.+..      .++.|.+++++
T Consensus        81 ~~~~~~~~d~~i~iS~sG~t~~~~~~~~~ak~~g~~vi~IT~~~~s~l~~~ad~~l~~~~~~~------~~~~S~~~~~~  154 (187)
T 3sho_A           81 TLANLRPTDLMIGVSVWRYLRDTVAALAGAAERGVPTMALTDSSVSPPARIADHVLVAATRGV------GHSLSPVGLIA  154 (187)
T ss_dssp             HHHTCCTTEEEEEECCSSCCHHHHHHHHHHHHTTCCEEEEESCTTSHHHHHCSEEEECCCCCS------SSSCCCHHHHH
T ss_pred             HHhcCCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCCEEEEeCCCCCcchhhCcEEEEecCCCC------cccccHhHHHH
Confidence            677899999999999999999999999999999999999999999999999999999998755      45788999999


Q ss_pred             HHHHHHHHHHhhcCCC
Q 019775          175 FGDTVAIAMMGARNLT  190 (336)
Q Consensus       175 l~d~l~~~~~~~~~~~  190 (336)
                      ++|+|+..+..+++..
T Consensus       155 l~d~L~~~~~~~~~~~  170 (187)
T 3sho_A          155 VVNLLLAEIAVREPER  170 (187)
T ss_dssp             HHHHHHHHHHHHCHHH
T ss_pred             HHHHHHHHHHHhCcHH
Confidence            9999999999887643

>2xhz_A KDSD, YRBH, arabinose 5-phosphate isomerase; lipopolysaccharide biogenesis; 2.60A {Escherichia coli}

Probab=99.96  E-value=1.7e-28  Score=203.49  Aligned_cols=173  Identities=27%  Similarity=0.513  Sum_probs=157.9

Q ss_pred             CcchHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHcCCCeEEEEeccchHHHHHHHHHHHHhcCCeeeecCCccccc
Q 019775           14 KVSENTLLDLFKSQQDHLNYFFQHLSLPHTLTFTQTLLKCRGTIFFTGVGKSGFVANKISQTLISLGIKSGFLNPLDALH   93 (336)
Q Consensus        14 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~i~~a~~~I~i~G~G~s~~~a~~~~~~l~~~g~~~~~~~~~~~~~   93 (336)
                      .+..++++++++.+.++++++.+.++. .++++++.|.+++++||++|.|.|+.+|.+++++|.++|+++..+++.+.+.
T Consensus        10 ~~~~~~~~~~~~~~~~~l~~t~~~~~~-~i~~~~~~i~~a~~~I~i~G~G~S~~~a~~~~~~l~~~g~~~~~~~~~~~~~   88 (183)
T 2xhz_A           10 FDFQQAGKEVLAIERECLAELDQYINQ-NFTLACEKMFWCKGKVVVMGMGASGHIGRKMAATFASTGTPSFFVHPGEAAH   88 (183)
T ss_dssp             -CHHHHHHHHHHHHHHHHTTGGGTSSH-HHHHHHHHHHTCSSCEEEEECHHHHHHHHHHHHHHHTTTCCEEECCTTHHHH
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhCCCeEEEEeecHHHHHHHHHHHHHHhcCceEEEeCchHHhh
Confidence            366789999999999999999999997 9999999999983399999999999999999999999999999998777766


Q ss_pred             cccCCCCCCcEEEEEeCCCCcHHHHHHHHHHHHcCCeEEEEeCCCCCccccccCEEEEcCCCcccCCCCCCChhHHHHHH
Q 019775           94 GDIGILSSDDILVMFSKSGNTEELLKVVPCAKAKGAYLVSVTSVEGNALAAVCDMNVHLPVERELCPFDLAPVTSTAIQM  173 (336)
Q Consensus        94 ~~~~~~~~~dlvi~iS~sG~~~~~~~~~~~ak~~g~~vi~IT~~~~s~l~~~ad~~i~~~~~~~~~~~~~~~~~s~~~~~  173 (336)
                      .....++++|++|+||+||++++++++++.||++|+++|+||++.++|++++||++|.++.+.+.......++.|.++++
T Consensus        89 ~~~~~~~~~d~vI~iS~sG~t~~~~~~~~~ak~~g~~vi~IT~~~~s~la~~ad~~l~~~~~~e~~~~~~~~~~S~~~~~  168 (183)
T 2xhz_A           89 GDLGMVTPQDVVIAISNSGESSEITALIPVLKRLHVPLICITGRPESSMARAADVHLCVKVAKEACPLGLAPTSSTTATL  168 (183)
T ss_dssp             HTSTTCCTTCEEEEECSSSCCHHHHHHHHHHHTTTCCEEEEESCTTSHHHHHSSEEEECCCSCCSSTTCSSCCHHHHHHH
T ss_pred             hhhccCCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCCEEEEECCCCChhHHhCCEEEEeCCCccccccCCCcchHHHHHH
Confidence            66678899999999999999999999999999999999999999999999999999999986653345567899999999


Q ss_pred             HHHHHHHHHHHhhc
Q 019775          174 VFGDTVAIAMMGAR  187 (336)
Q Consensus       174 ~l~d~l~~~~~~~~  187 (336)
                      +++|+|+..+..++
T Consensus       169 ~~~d~L~~~~~~~~  182 (183)
T 2xhz_A          169 VMGDALAVALLKAR  182 (183)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhc
Confidence            99999999998764

>1m3s_A Hypothetical protein YCKF; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.95A {Bacillus subtilis} SCOP: c.80.1.3 PDB: 1viv_A

Probab=99.96  E-value=5.7e-28  Score=200.91  Aligned_cols=175  Identities=18%  Similarity=0.313  Sum_probs=157.4

Q ss_pred             HHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHcCCCeEEEEeccchHHHHHHHHHHHHhcCCeeeecCCccccccccCCC
Q 019775           20 LLDLFKSQQDHLNYFFQHLSLPHTLTFTQTLLKCRGTIFFTGVGKSGFVANKISQTLISLGIKSGFLNPLDALHGDIGIL   99 (336)
Q Consensus        20 ~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~i~~a~~~I~i~G~G~s~~~a~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~   99 (336)
                      ++++++...+.++++.+.++.+.++++++.|.++ ++||++|.|.|+.+|.+++++|.++|+++..+.+..     ...+
T Consensus         4 ~~~~~~~~~~~l~~t~~~l~~~~i~~~~~~i~~a-~~I~i~G~G~S~~~A~~~~~~l~~~g~~~~~~~~~~-----~~~~   77 (186)
T 1m3s_A            4 TTEYVAEILNELHNSAAYISNEEADQLADHILSS-HQIFTAGAGRSGLMAKSFAMRLMHMGFNAHIVGEIL-----TPPL   77 (186)
T ss_dssp             HHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHC-SCEEEECSHHHHHHHHHHHHHHHHTTCCEEETTSTT-----CCCC
T ss_pred             HHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHcC-CeEEEEecCHHHHHHHHHHHHHHhcCCeEEEeCccc-----ccCC
Confidence            4568889999999999999999999999999999 699999999999999999999999999999986652     4678


Q ss_pred             CCCcEEEEEeCCCCcHHHHHHHHHHHHcCCeEEEEeCCCCCccccccCEEEEcCCCcccCC---CC-CCChhHHH--HHH
Q 019775          100 SSDDILVMFSKSGNTEELLKVVPCAKAKGAYLVSVTSVEGNALAAVCDMNVHLPVERELCP---FD-LAPVTSTA--IQM  173 (336)
Q Consensus       100 ~~~dlvi~iS~sG~~~~~~~~~~~ak~~g~~vi~IT~~~~s~l~~~ad~~i~~~~~~~~~~---~~-~~~~~s~~--~~~  173 (336)
                      +++|++|+||+||++++++++++.||++|+++|+||++.++|++++||++|.++...+...   +. ..++.|.+  +++
T Consensus        78 ~~~d~vI~iS~sG~t~~~~~~~~~ak~~g~~vi~IT~~~~s~l~~~ad~~l~~~~~~~~~~~~~~~s~~~~~s~~~~~~~  157 (186)
T 1m3s_A           78 AEGDLVIIGSGSGETKSLIHTAAKAKSLHGIVAALTINPESSIGKQADLIIRMPGSPKDQSNGSYKTIQPMGSLFEQTLL  157 (186)
T ss_dssp             CTTCEEEEECSSSCCHHHHHHHHHHHHTTCEEEEEESCTTSHHHHHCSEEEECSCCSCC-----CCCCSSTTHHHHHHHH
T ss_pred             CCCCEEEEEcCCCCcHHHHHHHHHHHHCCCEEEEEECCCCCchHHhCCEEEEeCCccccCCCCcccccccCccHHHHHHH
Confidence            8999999999999999999999999999999999999999999999999999998765210   11 45788875  679


Q ss_pred             HHHHHHHHHHHhhcCCChHHHhhcCCC
Q 019775          174 VFGDTVAIAMMGARNLTRDEYAANHPA  200 (336)
Q Consensus       174 ~l~d~l~~~~~~~~~~~~~~~~~~~~~  200 (336)
                      +++|+|+..++.+++.+++++.++|++
T Consensus       158 ~~~d~L~~~~~~~~~~~~~~~~~~h~~  184 (186)
T 1m3s_A          158 LFYDAVILKLMEKKGLDSETMFTHHAN  184 (186)
T ss_dssp             HHHHHHHHHHHHHTTCCTTTCCCCCCC
T ss_pred             HHHHHHHHHHHHHcCCCHHHHHHhccC
Confidence            999999999999999999999999986

>1vim_A Hypothetical protein AF1796; structural genomics, unknown function; 1.36A {Archaeoglobus fulgidus} SCOP: c.80.1.3

Probab=99.96  E-value=3.2e-27  Score=198.46  Aligned_cols=180  Identities=24%  Similarity=0.368  Sum_probs=158.4

Q ss_pred             cchHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHcCCCeEEEEeccchHHHHHHHHHHHHhcCCeeeecCCcccccc
Q 019775           15 VSENTLLDLFKSQQDHLNYFFQHLSLPHTLTFTQTLLKCRGTIFFTGVGKSGFVANKISQTLISLGIKSGFLNPLDALHG   94 (336)
Q Consensus        15 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~i~~a~~~I~i~G~G~s~~~a~~~~~~l~~~g~~~~~~~~~~~~~~   94 (336)
                      ...-...++++.+.+.++++.+.++.+.++++++.|.++ ++||++|.|.|..+|.+|+++|.++|+++..+.+..    
T Consensus         9 ~~~~~~~~~~~~~~~~i~~t~~~l~~~~l~~~~~~i~~a-~~I~i~G~G~S~~~A~~~~~~l~~~g~~~~~~~~~~----   83 (200)
T 1vim_A            9 GGHMSLLRFLEVVSEHIKNLRNHIDLETVGEMIKLIDSA-RSIFVIGAGRSGYIAKAFAMRLMHLGYTVYVVGETV----   83 (200)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHS-SCEEEECSHHHHHHHHHHHHHHHHTTCCEEETTSTT----
T ss_pred             cccchHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcC-CEEEEEEecHHHHHHHHHHHHHHhcCCeEEEeCCcc----
Confidence            334456688999999999999999999999999999999 699999999999999999999999999999987642    


Q ss_pred             ccCCCCCCcEEEEEeCCCCcHHHHHHHHHHHHcCCeEEEEeCCCCCccccccCEEEEcCCCcccCCCC-----CCChhHH
Q 019775           95 DIGILSSDDILVMFSKSGNTEELLKVVPCAKAKGAYLVSVTSVEGNALAAVCDMNVHLPVERELCPFD-----LAPVTST  169 (336)
Q Consensus        95 ~~~~~~~~dlvi~iS~sG~~~~~~~~~~~ak~~g~~vi~IT~~~~s~l~~~ad~~i~~~~~~~~~~~~-----~~~~~s~  169 (336)
                       ...++++|++|+||+||++++++++++.||++|+++|+||++.++|++++||++|.++.+.+. ...     ..+++|+
T Consensus        84 -~~~~~~~DvvI~iS~SG~t~~~i~~~~~ak~~g~~vI~IT~~~~s~La~~ad~~l~~~~~~~~-~~~~~~~~~~~~~s~  161 (200)
T 1vim_A           84 -TPRITDQDVLVGISGSGETTSVVNISKKAKDIGSKLVAVTGKRDSSLAKMADVVMVVKGKMKQ-ERDEILSQLAPLGTM  161 (200)
T ss_dssp             -CCCCCTTCEEEEECSSSCCHHHHHHHHHHHHHTCEEEEEESCTTSHHHHHCSEEEECCSSCTT-CCHHHHHHHSGGGHH
T ss_pred             -ccCCCCCCEEEEEeCCCCcHHHHHHHHHHHHCCCeEEEEECCCCChHHHhCCEEEEECCcccc-cCCcccccccccccH
Confidence             356889999999999999999999999999999999999999999999999999999987652 111     2367777


Q ss_pred             H--HHHHHHHHHHHHHHhhcCCChHHHhhcCCCC
Q 019775          170 A--IQMVFGDTVAIAMMGARNLTRDEYAANHPAG  201 (336)
Q Consensus       170 ~--~~~~l~d~l~~~~~~~~~~~~~~~~~~~~~~  201 (336)
                      +  ++++++|+|+..++.+.+.+.+++.+.|+.-
T Consensus       162 ~~~~~~~lld~L~~~~~~~~~~~~~~~~~~h~~l  195 (200)
T 1vim_A          162 FELTAMIFLDALVAEIMMQKHLTEKDLEARHAVL  195 (200)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTCCHHHHHHHSCCT
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCCHHHHHHhhhhh
Confidence            4  6689999999999999988888888887764

>1jeo_A MJ1247, hypothetical protein MJ1247; RUMP pathway, phosphosugar, 3-hexulose-6-phosphate isomerase structural genomics; HET: CME CIT; 2.00A {Methanocaldococcus jannaschii} SCOP: c.80.1.3

Probab=99.95  E-value=2.4e-27  Score=196.09  Aligned_cols=173  Identities=24%  Similarity=0.354  Sum_probs=157.9

Q ss_pred             hHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHcCCCeEEEEeccchHHHHHHHHHHHHhcCCeeeecCCcccccccc
Q 019775           17 ENTLLDLFKSQQDHLNYFFQHLSLPHTLTFTQTLLKCRGTIFFTGVGKSGFVANKISQTLISLGIKSGFLNPLDALHGDI   96 (336)
Q Consensus        17 ~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~i~~a~~~I~i~G~G~s~~~a~~~~~~l~~~g~~~~~~~~~~~~~~~~   96 (336)
                      .++++++++...++++++.+.++.+.++++++.|.++ ++||++|.|.|+.+|.+++++|.++|+++..+++..     .
T Consensus         4 ~~~~~~~~~~~~~~i~~t~~~l~~~~i~~~~~~i~~a-~~I~i~G~G~S~~~A~~~~~~l~~~g~~~~~~~~~~-----~   77 (180)
T 1jeo_A            4 LEELDIVSNNILILKKFYTNDEWKNKLDSLIDRIIKA-KKIFIFGVGRSGYIGRCFAMRLMHLGFKSYFVGETT-----T   77 (180)
T ss_dssp             CHHHHHHHHHHHGGGHHHHCHHHHHHHHHHHHHHHHC-SSEEEECCHHHHHHHHHHHHHHHHTTCCEEETTSTT-----C
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhC-CEEEEEeecHHHHHHHHHHHHHHHcCCeEEEeCCCc-----c
Confidence            4678899999999999999999999999999999999 699999999999999999999999999999986552     4


Q ss_pred             CCCCCCcEEEEEeCCCCcHHHHHHHHHHHHcCCeEEEEeCCCCCccccccCEEEEcCCCcccCCCCCCChhHHH--HHHH
Q 019775           97 GILSSDDILVMFSKSGNTEELLKVVPCAKAKGAYLVSVTSVEGNALAAVCDMNVHLPVERELCPFDLAPVTSTA--IQMV  174 (336)
Q Consensus        97 ~~~~~~dlvi~iS~sG~~~~~~~~~~~ak~~g~~vi~IT~~~~s~l~~~ad~~i~~~~~~~~~~~~~~~~~s~~--~~~~  174 (336)
                      ..++++|++|+||+||++++++++++.||++|+++|+||++.++ ++++||+++.++.. +  . ...++.|.+  ++++
T Consensus        78 ~~~~~~d~vi~iS~sG~t~~~~~~~~~ak~~g~~vi~IT~~~~s-l~~~ad~~l~~~~~-~--~-~~~~~~s~~~~~~~~  152 (180)
T 1jeo_A           78 PSYEKDDLLILISGSGRTESVLTVAKKAKNINNNIIAIVCECGN-VVEFADLTIPLEVK-K--S-KYLPMGTTFEETALI  152 (180)
T ss_dssp             CCCCTTCEEEEEESSSCCHHHHHHHHHHHTTCSCEEEEESSCCG-GGGGCSEEEECCCC-C--B-TTBCTTHHHHHHHHH
T ss_pred             ccCCCCCEEEEEeCCCCcHHHHHHHHHHHHCCCcEEEEeCCCCh-HHHhCCEEEEeCCc-c--c-ccccchhHHHHHHHH
Confidence            56889999999999999999999999999999999999999999 99999999999883 3  1 446777775  6799


Q ss_pred             HHHHHHHHHHhhcCCChHHHhhcCCC
Q 019775          175 FGDTVAIAMMGARNLTRDEYAANHPA  200 (336)
Q Consensus       175 l~d~l~~~~~~~~~~~~~~~~~~~~~  200 (336)
                      ++|+|+..+..+++.+++++.++|++
T Consensus       153 ~ld~L~~~~~~~~~~~~~~~~~~h~~  178 (180)
T 1jeo_A          153 FLDLVIAEIMKRLNLDESEIIKRHCN  178 (180)
T ss_dssp             HHHHHHHHHHHHTTCCHHHHHHHSCC
T ss_pred             HHHHHHHHHHHHcCCCHHHHHhhCcc
Confidence            99999999999999999999988875

>2yva_A DNAA initiator-associating protein DIAA; intermolecular disulfide bonding, putative phosphosugar BIND protein, DNAA binding protein; 1.85A {Escherichia coli}

Probab=99.92  E-value=2.9e-24  Score=179.93  Aligned_cols=162  Identities=20%  Similarity=0.258  Sum_probs=140.3

Q ss_pred             hHHHHHHHHHHHHHHHHHHhcCCh---hHHHHHHHHHHcCCCeEEEEeccchHHHHHHHHHHHH------hcCCeeeecC
Q 019775           17 ENTLLDLFKSQQDHLNYFFQHLSL---PHTLTFTQTLLKCRGTIFFTGVGKSGFVANKISQTLI------SLGIKSGFLN   87 (336)
Q Consensus        17 ~~~~~~~~~~~~~~l~~~~~~~~~---~~i~~~~~~i~~a~~~I~i~G~G~s~~~a~~~~~~l~------~~g~~~~~~~   87 (336)
                      .+.++++++.+.++++++.+.+++   +.++++++.|.++ ++||++|.|.|+.+|.+++++|.      +.|+++..++
T Consensus         2 ~~~~~~~~~~~~~~l~~t~~~l~~~i~~~~~~~~~~i~~a-~~I~i~G~G~S~~~A~~~~~~l~~~~~~~~~g~~~~~~~   80 (196)
T 2yva_A            2 QERIKACFTESIQTQIAAAEALPDAISRAAMTLVQSLLNG-NKILCCGNGTSAANAQHFAASMINRFETERPSLPAIALN   80 (196)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHTT-CCEEEEESTHHHHHHHHHHHHHHTCSSSCCCCCCEEESS
T ss_pred             hhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcC-CEEEEEeCchhhHHHHHHHHHHhccccccCCCCceEeec
Confidence            457788999999999999999998   8999999999999 69999999999999999999999      8899998876


Q ss_pred             C-----------cccccc----ccCCCCCCcEEEEEeCCCCcHHHHHHHHHHHHcCCeEEEEeCCCCCccccc---cCEE
Q 019775           88 P-----------LDALHG----DIGILSSDDILVMFSKSGNTEELLKVVPCAKAKGAYLVSVTSVEGNALAAV---CDMN  149 (336)
Q Consensus        88 ~-----------~~~~~~----~~~~~~~~dlvi~iS~sG~~~~~~~~~~~ak~~g~~vi~IT~~~~s~l~~~---ad~~  149 (336)
                      +           ......    ....++++|++|+||+||++++++++++.||++|+++|+||++.++|++++   ||++
T Consensus        81 ~~~~~~~a~~~d~~~~~~~~~~~~~~~~~~DvvI~iS~SG~t~~~i~~~~~ak~~g~~vI~IT~~~~s~la~~~~~ad~~  160 (196)
T 2yva_A           81 TDNVVLTAIANDRLHDEVYAKQVRALGHAGDVLLAISTRGNSRDIVKAVEAAVTRDMTIVALTGYDGGELAGLLGPQDVE  160 (196)
T ss_dssp             CCHHHHHHHTTSTTGGGHHHHHHHHHCCTTCEEEEECSSSCCHHHHHHHHHHHHTTCEEEEEECTTCHHHHTTCCTTSEE
T ss_pred             CchHHHHHHhcCCCHHHHHHHHHHhcCCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCEEEEEeCCCCchhhhcccCCCEE
Confidence            2           221110    024578999999999999999999999999999999999999999999999   9999


Q ss_pred             EEcCCCcccCCCCCCChhHHHHHHHHHHHHHHHHHhhc
Q 019775          150 VHLPVERELCPFDLAPVTSTAIQMVFGDTVAIAMMGAR  187 (336)
Q Consensus       150 i~~~~~~~~~~~~~~~~~s~~~~~~l~d~l~~~~~~~~  187 (336)
                      |.++....      +  ....++++++|+|+..+..+.
T Consensus       161 l~~~~~~~------~--~~~~~~l~~~~~L~~~~~~~l  190 (196)
T 2yva_A          161 IRIPSHRS------A--RIQEMHMLTVNCLCDLIDNTL  190 (196)
T ss_dssp             EECSCSCH------H--HHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEeCCCCh------h--HHHHHHHHHHHHHHHHHHHHh
Confidence            99987643      1  114499999999999998764

>1x92_A APC5045, phosphoheptose isomerase; midwest centre for structural genomics, SIS domain, A/B protein, lipopolysaccharide biosynthesis, PSI; HET: M7P; 2.30A {Pseudomonas aeruginosa} SCOP: c.80.1.3 PDB: 3bjz_A

Probab=99.92  E-value=5.1e-24  Score=178.89  Aligned_cols=162  Identities=18%  Similarity=0.242  Sum_probs=138.9

Q ss_pred             chHHHHHHHHHHHHHHHHHHhcCChhHHHHHH----HHHHcCCCeEEEEeccchHHHHHHHHHHH------HhcCCeeee
Q 019775           16 SENTLLDLFKSQQDHLNYFFQHLSLPHTLTFT----QTLLKCRGTIFFTGVGKSGFVANKISQTL------ISLGIKSGF   85 (336)
Q Consensus        16 ~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~----~~i~~a~~~I~i~G~G~s~~~a~~~~~~l------~~~g~~~~~   85 (336)
                      ..++++++++.+.++++++.+.++ +.+++++    +.|.++ ++||++|.|.|+.+|.+++++|      .+.|+++..
T Consensus         5 ~~~~~~~~~~~~~~~l~~t~~~l~-~~i~~~~~~i~~~i~~a-~~I~i~G~G~S~~~A~~~~~~l~~~~~~~~~g~~~~~   82 (199)
T 1x92_A            5 MQHRIRQLFQASIETKQQALEVLP-PYIEQASLVMVNALLNE-GKILSCGNGGSAGDAQHFSSELLNRFERERPSLPAVA   82 (199)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHSH-HHHHHHHHHHHHHHHTT-CCEEEECSTHHHHHHHHHHHHHHTCSSSCCCCCCEEE
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhH-HHHHHHHHHHHHHHHCC-CEEEEEcCchhHHHHHHHHHHHhcCcccCCCCCceEe
Confidence            357788999999999999999998 5787877    778889 6999999999999999999999      778999998


Q ss_pred             cCCc-----------cccccc----cCCCCCCcEEEEEeCCCCcHHHHHHHHHHHHcCCeEEEEeCCCCCccccc---cC
Q 019775           86 LNPL-----------DALHGD----IGILSSDDILVMFSKSGNTEELLKVVPCAKAKGAYLVSVTSVEGNALAAV---CD  147 (336)
Q Consensus        86 ~~~~-----------~~~~~~----~~~~~~~dlvi~iS~sG~~~~~~~~~~~ak~~g~~vi~IT~~~~s~l~~~---ad  147 (336)
                      +++.           ......    ...++++|++|+||+||++++++++++.||++|+++|+||++.++|++++   ||
T Consensus        83 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~DvvI~iS~SG~t~~~i~~~~~ak~~g~~vI~IT~~~~s~La~~~~~ad  162 (199)
T 1x92_A           83 LTTDSSTITSIANDYSYNEVFSKQIRALGQPGDVLLAISTSGNSANVIQAIQAAHDREMLVVALTGRDGGGMASLLLPED  162 (199)
T ss_dssp             TTCCHHHHHHHHHHTCGGGTTHHHHHHHCCTTCEEEEECSSSCCHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHCCTTC
T ss_pred             cCCChhHHHHhhcCccHHHHHHHHHHhCCCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCEEEEEECCCCCcHHhccccCC
Confidence            8632           111111    13578999999999999999999999999999999999999999999999   99


Q ss_pred             EEEEcCCCcccCCCCCCChhHHHHHHHHHHHHHHHHHhhc
Q 019775          148 MNVHLPVERELCPFDLAPVTSTAIQMVFGDTVAIAMMGAR  187 (336)
Q Consensus       148 ~~i~~~~~~~~~~~~~~~~~s~~~~~~l~d~l~~~~~~~~  187 (336)
                      ++|.+++..+      ..+  ..++++++|+|+..+..+.
T Consensus       163 ~~l~~~~~~~------~~~--~~~~l~i~~~L~~~~~~~~  194 (199)
T 1x92_A          163 VEIRVPSKIT------ARI--QEVHLLAIHCLCDLIDRQL  194 (199)
T ss_dssp             EEEECSCSCH------HHH--HHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEeCCCch------HHH--HHHHHHHHHHHHHHHHHHh
Confidence            9999998654      112  7899999999999988764

>2xbl_A Phosphoheptose isomerase; capsule; HET: M7P PGE PG4; 1.62A {Burkholderia pseudomallei} PDB: 2x3y_A

Probab=99.89  E-value=6.8e-23  Score=171.85  Aligned_cols=164  Identities=19%  Similarity=0.256  Sum_probs=138.9

Q ss_pred             CcchHHHHHHHHHHHHHHHHHHh-cCChhHHHHHHHHH----HcCCCeEEEEeccchHHHHHHHHHHH------HhcCCe
Q 019775           14 KVSENTLLDLFKSQQDHLNYFFQ-HLSLPHTLTFTQTL----LKCRGTIFFTGVGKSGFVANKISQTL------ISLGIK   82 (336)
Q Consensus        14 ~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~i~~~~~~i----~~a~~~I~i~G~G~s~~~a~~~~~~l------~~~g~~   82 (336)
                      ++..++++++++.+.+.++++.+ .++.+.++++++.+    .++ ++||++|.|.|+.+|.+++..|      .+.|++
T Consensus         4 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~i~~~i~~~-~~I~i~G~G~S~~~A~~~~~~l~~~~~~~~~g~~   82 (198)
T 2xbl_A            4 NRELTYITNSIAEAQRVMAAMLADERLLATVRKVADACIASIAQG-GKVLLAGNGGSAADAQHIAGEFVSRFAFDRPGLP   82 (198)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHTT-CCEEEECSTHHHHHHHHHHHHHHSCSSSCCCCCC
T ss_pred             hhHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHcC-CEEEEEeCcHhhHHHHHHHHHHHhhhccCCCCCc
Confidence            44467899999999999999998 88888999999887    477 6999999999999999998654      456888


Q ss_pred             eeecC-Ccccc--------------ccccCCCCCCcEEEEEeCCCCcHHHHHHHHHHHHcCCeEEEEeCCCCCccccccC
Q 019775           83 SGFLN-PLDAL--------------HGDIGILSSDDILVMFSKSGNTEELLKVVPCAKAKGAYLVSVTSVEGNALAAVCD  147 (336)
Q Consensus        83 ~~~~~-~~~~~--------------~~~~~~~~~~dlvi~iS~sG~~~~~~~~~~~ak~~g~~vi~IT~~~~s~l~~~ad  147 (336)
                      +..++ +....              ......++++|++|+||+||++++++++++.||++|+++|+||++.++|++++||
T Consensus        83 ~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vI~iS~SG~t~~~~~~~~~ak~~g~~vI~IT~~~~s~L~~~ad  162 (198)
T 2xbl_A           83 AVALTTDTSILTAIGNDYGYEKLFSRQVQALGNEGDVLIGYSTSGKSPNILAAFREAKAKGMTCVGFTGNRGGEMRELCD  162 (198)
T ss_dssp             EEETTCCHHHHHHHHHHHCGGGTTHHHHHHHCCTTCEEEEECSSSCCHHHHHHHHHHHHTTCEEEEEECSCCCTHHHHCS
T ss_pred             eEEecCChHHHHHhhccCCHHHHHHHHHHhhCCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCeEEEEECCCCCcHHHhCC
Confidence            88885 33210              1112347899999999999999999999999999999999999999999999999


Q ss_pred             EEEEcCCCcccCCCCCCChhHHHHHHHHHHHHHHHHHhh
Q 019775          148 MNVHLPVERELCPFDLAPVTSTAIQMVFGDTVAIAMMGA  186 (336)
Q Consensus       148 ~~i~~~~~~~~~~~~~~~~~s~~~~~~l~d~l~~~~~~~  186 (336)
                      ++|.++.+.+      .  .+..++++++|+|+..+.++
T Consensus       163 ~~l~~~~~~~------~--~~~~~~l~i~~~L~~~~~~~  193 (198)
T 2xbl_A          163 LLLEVPSADT------P--KIQEGHLVLGHIVCGLVEHS  193 (198)
T ss_dssp             EEEECSCSSH------H--HHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEeCCCcH------H--HHHHHHHHHHHHHHHHHHHH
Confidence            9999988755      1  25789999999999988765

>3trj_A Phosphoheptose isomerase; lipopolysaccharide biosynthesis; 2.80A {Francisella tularensis subsp}

Probab=99.89  E-value=2.3e-22  Score=168.62  Aligned_cols=163  Identities=18%  Similarity=0.283  Sum_probs=136.6

Q ss_pred             chHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHcC---CCeEEEEeccchHHHHHHHHHHHH------hcCCeeeec
Q 019775           16 SENTLLDLFKSQQDHLNYFFQHLSLPHTLTFTQTLLKC---RGTIFFTGVGKSGFVANKISQTLI------SLGIKSGFL   86 (336)
Q Consensus        16 ~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~i~~a---~~~I~i~G~G~s~~~a~~~~~~l~------~~g~~~~~~   86 (336)
                      ..+.++++++...+.++++.+.+++ .++++++.|.++   ++|||++|.|.|..+|.+++++|.      +.|++++.+
T Consensus         6 ~~~~~~~~~~~~~~~l~~t~~~l~~-~i~~a~~~i~~al~~~~~I~i~G~G~S~~~A~~~~~~l~~~~~~~r~g~~~~~~   84 (201)
T 3trj_A            6 SLDKINSYFESSIQAKIETANALPP-AIAQAAKAMVSCLENGGKVLVCGNGSSGVIAQHFTSKLLNHFEMERPPLPAIAL   84 (201)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHSHH-HHHHHHHHHHHHHHTTCCEEEEESTHHHHHHHHHHHHHHC-------CCCEEET
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHCCCEEEEEeCcHhHHHHHHHHHHhcCccCCCCCCCceEEc
Confidence            4678899999999999999999995 999999997543   259999999999999999999998      689999988


Q ss_pred             C-Ccccc-------------ccc-cCCCCCCcEEEEEeCCCCcHHHHHHHHHHHHcCCeEEEEeCCCCCcccccc---CE
Q 019775           87 N-PLDAL-------------HGD-IGILSSDDILVMFSKSGNTEELLKVVPCAKAKGAYLVSVTSVEGNALAAVC---DM  148 (336)
Q Consensus        87 ~-~~~~~-------------~~~-~~~~~~~dlvi~iS~sG~~~~~~~~~~~ak~~g~~vi~IT~~~~s~l~~~a---d~  148 (336)
                      + +...+             ... ...++++|++|+||+||++++++++++.||++|+++|+||++.++|++++|   |+
T Consensus        85 ~~d~~~~~a~~~d~~~~~~~~~~l~~~~~~~Dvvi~iS~SG~t~~~~~~~~~ak~~g~~vi~iT~~~~s~la~~a~~~d~  164 (201)
T 3trj_A           85 TGDVATITAVGNHYGFSQIFAKQVAALGNEDDILLVITTSGDSENILSAVEEAHDLEMKVIALTGGSGGALQNMYNTDDI  164 (201)
T ss_dssp             TSCHHHHHHHHHHTCGGGTTHHHHHHHCCTTCEEEEECSSSCCHHHHHHHHHHHHTTCEEEEEEETTCCGGGGTCCTTCE
T ss_pred             cCChHHHHHhccCCCHHHHHHHHHHhhCCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCcEEEEECCCCCHHHHhhccCCE
Confidence            6 32110             000 123789999999999999999999999999999999999999999999999   99


Q ss_pred             EEEcCCCcccCCCCCCChhHHHHHHHHHHHHHHHHHhhc
Q 019775          149 NVHLPVERELCPFDLAPVTSTAIQMVFGDTVAIAMMGAR  187 (336)
Q Consensus       149 ~i~~~~~~~~~~~~~~~~~s~~~~~~l~d~l~~~~~~~~  187 (336)
                      +|.+|....        -....++++++|+|+..+.+..
T Consensus       165 ~l~~~~~~~--------~~~~~~~l~i~~~l~~~v~~~l  195 (201)
T 3trj_A          165 ELRVPSDNI--------ANIQENHFLIVHCLCDIIDQKL  195 (201)
T ss_dssp             EEEESCCCH--------HHHHHHHHHHHHHHHHHHHTC-
T ss_pred             EEEeCCCCc--------hHHHHHHHHHHHHHHHHHHHHH
Confidence            999988644        1236788999999998887653

>3k2v_A Putative D-arabinose 5-phosphate isomerase; KPSF-like protein, CBS domain, structural genomics, PSI-2, P structure initiative; HET: MSE CMK; 1.95A {Klebsiella pneumoniae subsp} PDB: 3fna_A*

Probab=99.88  E-value=1.9e-22  Score=161.22  Aligned_cols=148  Identities=32%  Similarity=0.603  Sum_probs=116.8

Q ss_pred             HHhhcCCChHHHhhcCCCCchhhhhhhhhhhccccCCCCccccCCCcHHHHHHHHHhcCcceEEEEcCCCcEEEEeeHHH
Q 019775          183 MMGARNLTRDEYAANHPAGRIGKSLIFKVQDVMKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGD  262 (336)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~it~~d  262 (336)
                      +++.++..++++.+.|+.+.+++.+.++|+++|.+...++++++++++.++++.|.+++++.+||+|++|+++|+||.+|
T Consensus         2 ~~~~~~f~~~~~~~~~~~~~l~~~l~~~v~dim~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~~Vvd~~~~~~Givt~~d   81 (149)
T 3k2v_A            2 NAEARGFTAEDFALSHPGGALGRKLLLRVNDIMHTGDEIPHVGLQATLRDALLEITRKNLGMTAICDDDMNIIGIFTDGD   81 (149)
T ss_dssp             ------------------CHHHHHTTSBGGGTSBCGGGSCEECTTCBHHHHHHHHHHHTSSEEEEECTTCBEEEEEEHHH
T ss_pred             cccccCCCHHHhhhcCCCchhchhcccCHHHHhcCCCCCeEECCCCcHHHHHHHHHhCCCcEEEEECCCCcEEEEecHHH
Confidence            56778888999999999999999999999999998222669999999999999999999999999998899999999999


Q ss_pred             HHHHHHhcCCchhhhhHhhhcCCCCeeeCCCccHHHHHHHhcCCCCCccEeEEEeCCCcEEEEEehhhHhhc
Q 019775          263 LRRTLKASGEGIFKLTVGEMCNRSPRTIGPDAMAVEAMQKMESPPSPVQFLPVINRQNILIGIVTLHGLVSA  334 (336)
Q Consensus       263 l~~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~l~Vv~~~~~~iGiit~~di~~~  334 (336)
                      |...+.. +......++.++|.+++.++.+++++.++++.|.++  +...+||+|+ ++++|+||+.||+++
T Consensus        82 l~~~~~~-~~~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~--~~~~lpVvd~-~~~~Giit~~dil~a  149 (149)
T 3k2v_A           82 LRRVFDT-GVDMRDASIADVMTRGGIRIRPGTLAVDALNLMQSR--HITCVLVADG-DHLLGVVHMHDLLRA  149 (149)
T ss_dssp             HHHHHCS-SSCCTTCBHHHHSEESCCEECTTCBHHHHHHHHHHH--TCSEEEEEET-TEEEEEEEHHHHTCC
T ss_pred             HHHHHhc-CCCcccCcHHHHcCCCCeEECCCCCHHHHHHHHHHc--CCCEEEEecC-CEEEEEEEHHHhhcC
Confidence            9987764 222236789999999999999999999999999999  8999999998 499999999999874

>1tk9_A Phosphoheptose isomerase 1; lipopolysaccharide biosynthesis, structural genomics, NYSGXRC, LPC1_camje, PSI, protein structure initiative; 2.10A {Campylobacter jejuni} SCOP: c.80.1.3

Probab=99.88  E-value=6.5e-22  Score=164.47  Aligned_cols=159  Identities=18%  Similarity=0.207  Sum_probs=131.2

Q ss_pred             chHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHH----HcCCCeEEEEeccchHHHHHHHHHHH------HhcCCeeee
Q 019775           16 SENTLLDLFKSQQDHLNYFFQHLSLPHTLTFTQTL----LKCRGTIFFTGVGKSGFVANKISQTL------ISLGIKSGF   85 (336)
Q Consensus        16 ~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~i----~~a~~~I~i~G~G~s~~~a~~~~~~l------~~~g~~~~~   85 (336)
                      ..++++++++.+.+.++++.+.+  +.++++++.+    .++ ++||++|.|+|+.+|.+++..|      .+.|+++..
T Consensus         3 ~~~~~~~~~~~~~~~l~~~~~~l--~~i~~~~~~i~~~l~~~-~~I~i~G~G~S~~~a~~~~~~l~~~~~~~~~g~~~~~   79 (188)
T 1tk9_A            3 LINLVEKEWQEHQKIVQASEILK--GQIAKVGELLCECLKKG-GKILICGNGGSAADAQHFAAELSGRYKKERKALAGIA   79 (188)
T ss_dssp             HHHHHHHHHHHHHHHHHHGGGGH--HHHHHHHHHHHHHHHTT-CCEEEEESTHHHHHHHHHHHHHHSCSSSCCCCCCEEE
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHCC-CEEEEEeCcHhHHHHHHHHHHHhhhhccCCCCCceEe
Confidence            46788899999999999999888  8899998854    458 6999999999999999999754      567898888


Q ss_pred             cC-Ccccc--------------ccccCCCCCCcEEEEEeCCCCcHHHHHHHHHHHHcCCeEEEEeCCCCCccccccCEEE
Q 019775           86 LN-PLDAL--------------HGDIGILSSDDILVMFSKSGNTEELLKVVPCAKAKGAYLVSVTSVEGNALAAVCDMNV  150 (336)
Q Consensus        86 ~~-~~~~~--------------~~~~~~~~~~dlvi~iS~sG~~~~~~~~~~~ak~~g~~vi~IT~~~~s~l~~~ad~~i  150 (336)
                      ++ +....              ......++++|++|+||+||++++++++++.||++|+++|+||++.++|++++||++|
T Consensus        80 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvvi~iS~sG~t~~~~~~~~~ak~~g~~vi~iT~~~~s~L~~~ad~~l  159 (188)
T 1tk9_A           80 LTTDTSALSAIGNDYGFEFVFSRQVEALGNEKDVLIGISTSGKSPNVLEALKKAKELNMLCLGLSGKGGGMMNKLCDHNL  159 (188)
T ss_dssp             SSCCHHHHHHHHHHTCGGGHHHHHHHHHCCTTCEEEEECSSSCCHHHHHHHHHHHHTTCEEEEEEEGGGTTHHHHCSEEE
T ss_pred             ccCCchhHhhhhcCCCHHHHHHHHHHHhCCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCEEEEEeCCCCcchHHcCCEEE
Confidence            85 34211              1122347899999999999999999999999999999999999999999999999999


Q ss_pred             EcCCCcccCCCCCCChhHHHHHHHHHHHHHHHHHh
Q 019775          151 HLPVERELCPFDLAPVTSTAIQMVFGDTVAIAMMG  185 (336)
Q Consensus       151 ~~~~~~~~~~~~~~~~~s~~~~~~l~d~l~~~~~~  185 (336)
                      .++.+..      .  ......++++++|...+.+
T Consensus       160 ~~~~~~~------~--~~~~~~~~~~~~l~~~v~~  186 (188)
T 1tk9_A          160 VVPSDDT------A--RIQEMHILIIHTLCQIIDE  186 (188)
T ss_dssp             EESCSCH------H--HHHHHHHHHHHHHHHHHHH
T ss_pred             EeCCCCH------H--HHHHHHHHHHHHHHHHHHh
Confidence            9988654      1  1345677888888776654

>3cvj_A Putative phosphoheptose isomerase; rossman fold, 3-layer (ABA) sandwich, structural genomics, J center for structural genomics, JCSG; HET: MSE; 2.00A {Bacillus halodurans c-125}

Probab=99.88  E-value=4.2e-22  Score=172.38  Aligned_cols=176  Identities=13%  Similarity=0.164  Sum_probs=133.7

Q ss_pred             HHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHc----CCCeEEEEeccchHHHHHHHHHHHHhcCC-eeeecCC-----
Q 019775           19 TLLDLFKSQQDHLNYFFQHLSLPHTLTFTQTLLK----CRGTIFFTGVGKSGFVANKISQTLISLGI-KSGFLNP-----   88 (336)
Q Consensus        19 ~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~i~~----a~~~I~i~G~G~s~~~a~~~~~~l~~~g~-~~~~~~~-----   88 (336)
                      +++++++...+.++.+.+ .+.+.+++++++|.+    + ++||++|+|.|+.+|.+++++|..+|. ++...++     
T Consensus         5 ~~~~~~~~~~~~l~~~~~-~~~~~i~~a~~~l~~~i~~~-~~I~i~G~G~S~~~A~~~~~~l~~l~~~~~~~~~~~~l~~   82 (243)
T 3cvj_A            5 SFTDYCKFFNRILSEVQE-TQEQAIIKGAHLVSEAVMNG-GRFYVFGSGHSHMIAEEIYNRAGGLALVTAILPPELMLHE   82 (243)
T ss_dssp             CHHHHHHHHHHHHHHHHH-HSHHHHHHHHHHHHHHHHTT-CCEEEEESGGGHHHHHHTSSSTTCBTTEEECCCGGGSSSS
T ss_pred             HHHHHHHHHHHHHHHHHH-hhHHHHHHHHHHHHHHHHCC-CEEEEEcCcHHHHHHHHHHHHhccccccCcccchhhhccC
Confidence            356677777777777776 678899999887754    6 699999999999999999999988875 4322211     


Q ss_pred             -------------ccccccccCCCCCCcEEEEEeCCCCcHHHHHHHHHHHHcCCeEEEEeCCCCC-----------cccc
Q 019775           89 -------------LDALHGDIGILSSDDILVMFSKSGNTEELLKVVPCAKAKGAYLVSVTSVEGN-----------ALAA  144 (336)
Q Consensus        89 -------------~~~~~~~~~~~~~~dlvi~iS~sG~~~~~~~~~~~ak~~g~~vi~IT~~~~s-----------~l~~  144 (336)
                                   ...+......++++|++|+||+||++++++++++.||++|++||+||++..|           |+++
T Consensus        83 ~~~~~~~~e~~~g~~~~~~~~~~~~~~Dv~I~iS~SG~t~~~i~~~~~Ak~~G~~vI~IT~~~~s~~~~~~~~~g~~La~  162 (243)
T 3cvj_A           83 RPNKSTYLERIEGLSKSYLKLHQVTNKDVIMIISNSGRNTVPVEMAIESRNIGAKVIAMTSMKHSQKVTSRHKSGKKLYE  162 (243)
T ss_dssp             STTHHHHHTTCTTHHHHHHHHTTCCTTCEEEEECSSCCSHHHHHHHHHHHHHTCEEEEEECHHHHHHSCCCSTTSCCGGG
T ss_pred             CchhhhhhhhcccHHHHHHHHhcCCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCEEEEEeCCcccccccccCCCcCcHHH
Confidence                         0111112345889999999999999999999999999999999999999777           9999


Q ss_pred             ccCEEEEcCCCcccC-------CCCCCChhHHHHHHHHHHHHHHHHHhh---cCCChHHHhhc
Q 019775          145 VCDMNVHLPVERELC-------PFDLAPVTSTAIQMVFGDTVAIAMMGA---RNLTRDEYAAN  197 (336)
Q Consensus       145 ~ad~~i~~~~~~~~~-------~~~~~~~~s~~~~~~l~d~l~~~~~~~---~~~~~~~~~~~  197 (336)
                      +||++|.+++.....       +....+++ .+++++++|+|+..+...   ++.++..|...
T Consensus       163 ~aD~~l~~~~~~~e~~~~~~~~~~~~~~~s-~~~~~~il~~L~~~~~~~~~~~~~~~~~~~~~  224 (243)
T 3cvj_A          163 YADVVLDNGAPVGDAGFQIANSEIYSGATS-DSIGCFLAQALIVETLHLLVQQGFEPPVFKSS  224 (243)
T ss_dssp             GCSEEEECCCCTTSCCEECSSSSCEECCCH-HHHHHHHHHHHHHHHHHHHHHTTCCCCBCCCT
T ss_pred             hCCEEEECCCCcccceeeccCccccCCcHH-HHHHHHHHHHHHHHHHHHHHHcCCCCCeeecC
Confidence            999999998764211       11224444 589999999999887765   34444445433

>3knz_A Putative sugar binding protein; structural genomics, joint C structural genomics, JCSG, protein structure initiative; 2.50A {Salmonella enterica subsp}

Probab=99.87  E-value=2.5e-21  Score=176.54  Aligned_cols=169  Identities=16%  Similarity=0.083  Sum_probs=139.7

Q ss_pred             cchHHHHHHHHHHHHHHHHHHhcCChhHHHHHHH-HHHcCCCeEEEEeccchHHHHHHHHHHHHh-cCCeeeecCCcccc
Q 019775           15 VSENTLLDLFKSQQDHLNYFFQHLSLPHTLTFTQ-TLLKCRGTIFFTGVGKSGFVANKISQTLIS-LGIKSGFLNPLDAL   92 (336)
Q Consensus        15 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~-~i~~a~~~I~i~G~G~s~~~a~~~~~~l~~-~g~~~~~~~~~~~~   92 (336)
                      -.+++..+.+.++.+.++++++....+.++.+.. .+.++ ++|+++|+|+|+.+|..+.+.|.+ .|+++....+++..
T Consensus        11 ~~~~~~~kEI~eqP~~l~~~l~~~~~~~~~~~~~~~~~~a-~~I~i~G~GtS~~aa~~~~~~~~~~~g~~~~~~~~se~~   89 (366)
T 3knz_A           11 HHENLYFQGMNETPLRLLEMLTQTREDLWRAAQALTERGV-TRIILTGSGTSYHGALTARTFMQRWCALPVDVCWPFMLD   89 (366)
T ss_dssp             ---CHHHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHTTC-CEEEEECCHHHHHHHHHHHHHHHHHHTSCEEEECGGGCC
T ss_pred             cccchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcCC-CEEEEEEechHHHHHHHHHHHHHHHHCCCeEEEcchHHH
Confidence            4567888899999999999998844456666653 35677 699999999999999999999998 49999888776553


Q ss_pred             ccccCCCCCCcEEEEEeCCCCcHHHHHHHHHHHHcCCeEEEEeCCCCCccccccCEEEEcCCCcccCCCCCCChhHHHHH
Q 019775           93 HGDIGILSSDDILVMFSKSGNTEELLKVVPCAKAKGAYLVSVTSVEGNALAAVCDMNVHLPVERELCPFDLAPVTSTAIQ  172 (336)
Q Consensus        93 ~~~~~~~~~~dlvi~iS~sG~~~~~~~~~~~ak~~g~~vi~IT~~~~s~l~~~ad~~i~~~~~~~~~~~~~~~~~s~~~~  172 (336)
                      .. ...++++|++|+||+||+|++++++++.||++|+++|+||++.+||+++.||++|.++.+.+   .....+.|.+++
T Consensus        90 ~~-~~~~~~~dlvI~iS~SGeT~e~l~a~~~ak~~Ga~~IaIT~~~~S~La~~aD~~l~~~~g~E---~~~a~tks~tsq  165 (366)
T 3knz_A           90 DE-TLARSGKALVVGISQGGGSLSTLAAMERARNVGHITASMAGVAPATIDRAADYILTVPCGEE---TAGAKTKGYHCT  165 (366)
T ss_dssp             HH-HHHHSCSEEEEEEESSSCCHHHHHHHHHHHHTTCEEEEEESSSSCGGGGGCSEECCCCCCC---------CTHHHHH
T ss_pred             hh-ccCCCCCCEEEEEcCCCCCHHHHHHHHHHHHcCCCEEEEECCCCChhhhhcCEEEecCCCcc---ccccccHHHHHH
Confidence            32 23458999999999999999999999999999999999999999999999999999988766   335778899999


Q ss_pred             HHHHHHHHHHHHhhcC
Q 019775          173 MVFGDTVAIAMMGARN  188 (336)
Q Consensus       173 ~~l~d~l~~~~~~~~~  188 (336)
                      +.++++|+..+...++
T Consensus       166 l~~l~lLa~~l~~~~g  181 (366)
T 3knz_A          166 VLNLMLLALAVAGQQQ  181 (366)
T ss_dssp             HHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHhC
Confidence            9999999999998765

>2i2w_A Phosphoheptose isomerase; lipopolysaccharide biosynthesis; 1.95A {Escherichia coli} PDB: 2i22_A 1x94_A

Probab=99.87  E-value=1.9e-21  Score=164.76  Aligned_cols=161  Identities=16%  Similarity=0.217  Sum_probs=128.7

Q ss_pred             chHHHHHHHHHHHHHHHHHHhc-CChhHHHHHHHH----HHcCCCeEEEEeccchHHHHHHHH------HHHHhcCCeee
Q 019775           16 SENTLLDLFKSQQDHLNYFFQH-LSLPHTLTFTQT----LLKCRGTIFFTGVGKSGFVANKIS------QTLISLGIKSG   84 (336)
Q Consensus        16 ~~~~~~~~~~~~~~~l~~~~~~-~~~~~i~~~~~~----i~~a~~~I~i~G~G~s~~~a~~~~------~~l~~~g~~~~   84 (336)
                      ..+.+.+++....+.++++.+. .+.+.++++++.    +.++ ++||++|+|.|+.+|.+++      +++.+.|+++.
T Consensus        22 ~~~~~~~~i~~~~~~l~~~~~~~~~~~~i~~~~~~i~~~l~~~-~~I~i~G~G~S~~~A~~~a~~l~~~~~~~~~g~~~~  100 (212)
T 2i2w_A           22 YQDLIRNELNEAAETLANFLKDDANIHAIQRAAVLLADSFKAG-GKVLSCGNGGSHCDAMHFAEELTGRYRENRPGYPAI  100 (212)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTT-CCEEEEESTHHHHHHHHHHHHHHHHHCTTSSSCSEE
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHHHHHhhhcccCCCCeEE
Confidence            4578899999999999999974 566788888877    6788 6999999999999999998      55666799888


Q ss_pred             ecCCcccc--------------ccccCCCCCCcEEEEEeCCCCcHHHHHHHHHHHHcCCeEEEEeCCCCCccccccCEEE
Q 019775           85 FLNPLDAL--------------HGDIGILSSDDILVMFSKSGNTEELLKVVPCAKAKGAYLVSVTSVEGNALAAVCDMNV  150 (336)
Q Consensus        85 ~~~~~~~~--------------~~~~~~~~~~dlvi~iS~sG~~~~~~~~~~~ak~~g~~vi~IT~~~~s~l~~~ad~~i  150 (336)
                      .+.+...+              ......++++|++|+||+||++++++++++.||++|+++|+||++.++|++++||++|
T Consensus       101 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvvI~iS~SG~t~~~i~~~~~ak~~G~~vIaIT~~~~s~La~~aD~~l  180 (212)
T 2i2w_A          101 AISDVSHISCVGNDFGFNDIFSRYVEAVGREGDVLLGISTSGNSANVIKAIAAAREKGMKVITLTGKDGGKMAGTADIEI  180 (212)
T ss_dssp             ECCCTTCGGGGSCCCSCSSHHHHHHHHHCCTTCEEEEECSSSCCHHHHHHHHHHHHHTCEEEEEEETTCGGGTTCSSEEE
T ss_pred             ecCChHHhhHhhccCCHHHHHHHHHHhcCCCCCEEEEEECCCCCHHHHHHHHHHHHCCCeEEEEECCCCCchHHhCCEEE
Confidence            87643221              0112347899999999999999999999999999999999999999999999999999


Q ss_pred             EcCCCcccCCCCCCChhHHHHHHHHHHHHHHHHH
Q 019775          151 HLPVERELCPFDLAPVTSTAIQMVFGDTVAIAMM  184 (336)
Q Consensus       151 ~~~~~~~~~~~~~~~~~s~~~~~~l~d~l~~~~~  184 (336)
                      .++.+.+      .. .+....+.++++|...+.
T Consensus       181 ~~~~g~e------~~-~~~~~~~~~~~~L~~~v~  207 (212)
T 2i2w_A          181 RVPHFGY------AD-RIQEIHIKVIHILIQLIE  207 (212)
T ss_dssp             EECCCSC------HH-HHHHHHHHHHHHHHHHHH
T ss_pred             EcCCCCc------hh-HHHHHHHHHHHHHHHHHH
Confidence            9988533      11 344455666666655544

>1j5x_A Glucosamine-6-phosphate deaminase; structural genomics, TM0813, glucosamine-6-phosphate deamina PSI, protein structure initiative; 1.80A {Thermotoga maritima} SCOP: c.80.1.1

Probab=99.87  E-value=2e-21  Score=176.19  Aligned_cols=164  Identities=21%  Similarity=0.204  Sum_probs=133.4

Q ss_pred             cchHHHHHHHHHHHHHHHHHHhc---CChhHHHHHHH--HHHcCCCeEEEEeccchHHHHHHHHHHHHh-cCCeeeecCC
Q 019775           15 VSENTLLDLFKSQQDHLNYFFQH---LSLPHTLTFTQ--TLLKCRGTIFFTGVGKSGFVANKISQTLIS-LGIKSGFLNP   88 (336)
Q Consensus        15 ~~~~~~~~~~~~~~~~l~~~~~~---~~~~~i~~~~~--~i~~a~~~I~i~G~G~s~~~a~~~~~~l~~-~g~~~~~~~~   88 (336)
                      -.++.+.+.+.++.+.++++.+.   .. .. +++++  .+.++ ++|+++|+|+|+.+|.++++.|.+ .|+++....+
T Consensus        11 ~~~~~m~keI~eqP~~~~~~~~~~~~~~-~~-~~~~~~~~l~~~-~~I~i~G~G~S~~~a~~~~~~l~~~~g~~v~~~~~   87 (342)
T 1j5x_A           11 HHMSKTLKEITDQKNELKKFFENFVLNL-EK-TEIFSEIQKNLT-DEVLFVGCGSSYNLALTISYYFERVLKIRTKAIPA   87 (342)
T ss_dssp             ---CHHHHHHHHHHHTHHHHHHHTGGGT-TC-------C----C-CEEEEEESTHHHHHHHHHHHHHHHHHCCEEEEEEH
T ss_pred             CCcchHHHHHHHHHHHHHHHHHhhhccc-ch-HHHHHHHHhCCC-CEEEEEEchHHHHHHHHHHHHHHHhhCCeEEEECc
Confidence            45677888888999999999987   33 23 66666  56788 699999999999999999999999 8999998876


Q ss_pred             ccccccccCCCCCC-cEEEEEeCCCCcHHHHHHHHHHHHcCCeEEEEeCCCCCccccccCEEEEcCCCcccCCCCCCChh
Q 019775           89 LDALHGDIGILSSD-DILVMFSKSGNTEELLKVVPCAKAKGAYLVSVTSVEGNALAAVCDMNVHLPVERELCPFDLAPVT  167 (336)
Q Consensus        89 ~~~~~~~~~~~~~~-dlvi~iS~sG~~~~~~~~~~~ak~~g~~vi~IT~~~~s~l~~~ad~~i~~~~~~~~~~~~~~~~~  167 (336)
                      .+. ......+.++ |++|+||+||+|++++++++.||++|+++|+||++.+||++++||++|.++. .+   .....+.
T Consensus        88 ~~~-~~~~~~~~~~~dlvI~iS~SG~T~e~l~a~~~ak~~Ga~vIaIT~~~~S~La~~ad~~l~~~~-~e---~~~a~t~  162 (342)
T 1j5x_A           88 GEV-AFQKIPDLEERGLAFLFSRTGNTTEVLLANDVLKKRNHRTIGITIEEESRLAKESDLPLVFPV-RE---EAIVMTK  162 (342)
T ss_dssp             HHH-HTTCSCCCCSSEEEEEECSSSCCHHHHHHHHHHHHTTEEEEEEESCTTSHHHHHSSEEEECCC-CC---CSSSCCH
T ss_pred             hHH-HhcCcccCCCCeEEEEEcCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCHHHHhcCEEEEcCC-Cc---ceecchH
Confidence            655 3334457788 9999999999999999999999999999999999999999999999999988 34   2446789


Q ss_pred             HHHHHHHHHHHHHHHHHhh
Q 019775          168 STAIQMVFGDTVAIAMMGA  186 (336)
Q Consensus       168 s~~~~~~l~d~l~~~~~~~  186 (336)
                      |.+++++++++|+..+...
T Consensus       163 s~~~~l~~l~~L~~~l~~~  181 (342)
T 1j5x_A          163 SFSMILLSLMFLADKIAGN  181 (342)
T ss_dssp             HHHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHHHHHhhh
Confidence            9999999999999998764

>3hba_A Putative phosphosugar isomerase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE CIT; 2.00A {Shewanella denitrificans OS217}

Probab=99.86  E-value=1.2e-20  Score=170.10  Aligned_cols=162  Identities=16%  Similarity=0.127  Sum_probs=135.6

Q ss_pred             HHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHH--HcCCCeEEEEeccchHHHHHHHHHHHHh-cCCeeeecCCcccccc
Q 019775           18 NTLLDLFKSQQDHLNYFFQHLSLPHTLTFTQTL--LKCRGTIFFTGVGKSGFVANKISQTLIS-LGIKSGFLNPLDALHG   94 (336)
Q Consensus        18 ~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~i--~~a~~~I~i~G~G~s~~~a~~~~~~l~~-~g~~~~~~~~~~~~~~   94 (336)
                      ..+.+.+.++.+.++++.+... +.++++++.+  .++ ++|+++|+|+|+.+|.++++.|.+ .|+++..+.+......
T Consensus         6 ~~M~kEI~eqP~~~~~~l~~~~-~~~~~~~~~i~~~~~-~~I~i~G~G~S~~aa~~~~~~l~~~~g~~v~~~~~~~~~~~   83 (334)
T 3hba_A            6 TIMEQEARTAPQKIAEQLLAND-AITESLGSVLREFKP-KFVMIVGRGSSDHAGVFAKYLFEIEASIPTFAAAPSVASVY   83 (334)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHCC-SCEEEESSGGGCHHHHHHHHHHHHHHCCCEEECCHHHHHTS
T ss_pred             HHHHHHHHHHHHHHHHHHHhhH-HHHHHHHHHHHhCCC-CEEEEEEechHHHHHHHHHHHHHHHhCCcEEEEcchHHHHh
Confidence            3466667778888888877643 5688888877  678 699999999999999999999997 7999998865544434


Q ss_pred             ccCCCCCCcEEEEEeCCCCcHHHHHHHHHHHHcCCeEEEEeCCCCCccccccCEEEEcCCCcccCCCCCCChhHHHHHHH
Q 019775           95 DIGILSSDDILVMFSKSGNTEELLKVVPCAKAKGAYLVSVTSVEGNALAAVCDMNVHLPVERELCPFDLAPVTSTAIQMV  174 (336)
Q Consensus        95 ~~~~~~~~dlvi~iS~sG~~~~~~~~~~~ak~~g~~vi~IT~~~~s~l~~~ad~~i~~~~~~~~~~~~~~~~~s~~~~~~  174 (336)
                      .....+++|++|++|+||+|++++++++.||++|+++|+||++.+||+++.||+++.++.+.+   .....+.+.+++++
T Consensus        84 ~~~~~~~~dl~i~iS~SG~T~e~~~a~~~ak~~g~~~i~IT~~~~S~la~~ad~~l~~~~g~E---~~va~Tksft~~l~  160 (334)
T 3hba_A           84 GKTLKLAGGLVIVISQSGRSPDILAQARMAKNAGAFCVALVNDETAPIKDIVDVVIPLRAGEE---KAVAATKSYLATLS  160 (334)
T ss_dssp             CCCCCCTTCEEEEEESSSCCHHHHHHHHHHHHTTCEEEEEESCTTSGGGGTSSEEEECCCCCC---CSSSCSHHHHHHHH
T ss_pred             cccCCCCCCEEEEEeCCCCCHHHHHHHHHHHHcCCcEEEEeCCCCChHHHhcCEeeeecCCCc---ccccchHHHHHHHH
Confidence            445678999999999999999999999999999999999999999999999999999998766   34467788888888


Q ss_pred             HHHHHHHHHH
Q 019775          175 FGDTVAIAMM  184 (336)
Q Consensus       175 l~d~l~~~~~  184 (336)
                      .+.+|...+.
T Consensus       161 ~l~~l~~~~~  170 (334)
T 3hba_A          161 ALLQVAAKWT  170 (334)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHhc
Confidence            7777766554

>1nri_A Hypothetical protein HI0754; structural genomics, haemophilus influ PSI, protein structure initiative, midwest center for struc genomics; 1.90A {Haemophilus influenzae} SCOP: c.80.1.3

Probab=99.86  E-value=6.3e-21  Score=170.02  Aligned_cols=177  Identities=16%  Similarity=0.173  Sum_probs=139.1

Q ss_pred             CcchHHHHHHHHH---HHHHHHHHHhcCChhHHHHHHHHHHcCCCeEEEEeccchHHHHHHHH-HHHHhcCCeeee----
Q 019775           14 KVSENTLLDLFKS---QQDHLNYFFQHLSLPHTLTFTQTLLKCRGTIFFTGVGKSGFVANKIS-QTLISLGIKSGF----   85 (336)
Q Consensus        14 ~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~i~~~~~~i~~a~~~I~i~G~G~s~~~a~~~~-~~l~~~g~~~~~----   85 (336)
                      .+..++++.+.+.   ..++++++...++ +.++++++.|.++ +|||++|.|+|+.+|.+++ ..+..+|.+...    
T Consensus        30 ~~~~~i~~~i~~e~~~~~~ai~~t~~~i~-~~i~~i~~~l~~a-~rI~~~G~G~S~~lA~~~a~~~~~~~g~~~~~~~~l  107 (306)
T 1nri_A           30 QSTLEIVRLMNEEDKLVPLAIESCLPQIS-LAVEQIVQAFQQG-GRLIYIGAGTSGRLGVLDASECPPTFGVSTEMVKGI  107 (306)
T ss_dssp             SCHHHHHHHHHHHHTHHHHHHHHHHHHHH-HHHHHHHHHHHTT-CCEEEEESHHHHHHHHHHHHHHHHHHCCCTTSEEEE
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHcC-CEEEEEeccHhHHHHHHHHHhcccccCCCHHHHHHH
Confidence            4556677777655   6668888888887 8999999999999 6999999999999996544 455555543211    


Q ss_pred             cC-C----------ccccc------cccCCCCCCcEEEEEeCCCCcHHHHHHHHHHHHcCCeEEEEeCCCCCccccccCE
Q 019775           86 LN-P----------LDALH------GDIGILSSDDILVMFSKSGNTEELLKVVPCAKAKGAYLVSVTSVEGNALAAVCDM  148 (336)
Q Consensus        86 ~~-~----------~~~~~------~~~~~~~~~dlvi~iS~sG~~~~~~~~~~~ak~~g~~vi~IT~~~~s~l~~~ad~  148 (336)
                      .. +          .....      .....++++|++|+||+||++++++++++.||++|+++|+||++++||++++||+
T Consensus       108 ~~~g~~a~~~a~e~~ed~~~~~~~~l~~~~l~~~DvvI~IS~SG~T~~vi~al~~Ak~~Ga~~IaIT~~~~S~La~~AD~  187 (306)
T 1nri_A          108 IAGGECAIRHPVEGAEDNTKAVLNDLQSIHFSKNDVLVGIAASGRTPYVIAGLQYAKSLGALTISIASNPKSEMAEIADI  187 (306)
T ss_dssp             ETTCTHHHHSCCTTGGGCTTHHHHHHHHTTCCTTSEEEEECTTSCCHHHHHHHHHHHHHTCEEEEEESSTTCHHHHHSSE
T ss_pred             HhcchHHHhhhhhcccCcHHHHHHHHHhcCCCCCCEEEEEECCCCCHHHHHHHHHHHHCCCEEEEEECCCCChHHHhCCE
Confidence            10 0          01111      1123688999999999999999999999999999999999999999999999999


Q ss_pred             EEEcCCCcccCCCCCCChhHHHHHHHHHHHHHHHHHhhcCCChHH
Q 019775          149 NVHLPVERELCPFDLAPVTSTAIQMVFGDTVAIAMMGARNLTRDE  193 (336)
Q Consensus       149 ~i~~~~~~~~~~~~~~~~~s~~~~~~l~d~l~~~~~~~~~~~~~~  193 (336)
                      +|.++++.+ .......+.+.+++++++|+|+..++.+.+.....
T Consensus       188 ~I~~~~g~E-~~~~st~~~s~ta~~~vl~~L~~~~~~~~g~~~~~  231 (306)
T 1nri_A          188 AIETIVGPE-ILTGSSRLKSGTAQKMVLNMLTTASMILLGKCYEN  231 (306)
T ss_dssp             EEECCCCSC-SSTTCTTTHHHHHHHHHHHHHHHHHHHHTTSCBTT
T ss_pred             EEEcCCCCc-cccCcccchhHHHHHHHHHHHHHHHHHHccHHHHH
Confidence            999987655 23344678999999999999999999988744444

>3fj1_A Putative phosphosugar isomerase; YP_167080.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative; HET: MSE; 1.75A {Silicibacter pomeroyi dss-3}

Probab=99.86  E-value=2e-20  Score=169.44  Aligned_cols=162  Identities=17%  Similarity=0.177  Sum_probs=134.2

Q ss_pred             HHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHH--HcCCCeEEEEeccchHHHHHHHHHHHHh-cCCeeeecCCcccccc
Q 019775           18 NTLLDLFKSQQDHLNYFFQHLSLPHTLTFTQTL--LKCRGTIFFTGVGKSGFVANKISQTLIS-LGIKSGFLNPLDALHG   94 (336)
Q Consensus        18 ~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~i--~~a~~~I~i~G~G~s~~~a~~~~~~l~~-~g~~~~~~~~~~~~~~   94 (336)
                      ..+.+.+.++.+.++++++... +.++++++.+  .++ ++|+++|+|+|+.+|.++.+.|.+ .|+++..+.+......
T Consensus         7 ~~m~kEI~eqP~~~~~~l~~~~-~~~~~~~~~~~~~~~-~~I~i~G~G~S~~aa~~~~~~l~~~~g~~~~~~~~~~~~~~   84 (344)
T 3fj1_A            7 TRMRREIDEIPEAVQRLLDHGA-QDVARVAAVLRLRDP-SFVATVARGSSDHVCTYLSYAAELLLGLPVASLGPSVASVY   84 (344)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHCC-SEEEEECCTHHHHHHHHHHHHHHHHHCCCEEECCTHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHHHhhH-HHHHHHHHHHhhCCC-CEEEEEEechHHHHHHHHHHHHHHHhCCcEEEecchHHhhh
Confidence            4566777788888888877643 4677787777  677 699999999999999999999998 6999998765444333


Q ss_pred             ccCCCCCCcEEEEEeCCCCcHHHHHHHHHHHHcCCeEEEEeCCCCCccccccCEEEEcCCCcccCCCCCCChhHHHHHHH
Q 019775           95 DIGILSSDDILVMFSKSGNTEELLKVVPCAKAKGAYLVSVTSVEGNALAAVCDMNVHLPVERELCPFDLAPVTSTAIQMV  174 (336)
Q Consensus        95 ~~~~~~~~dlvi~iS~sG~~~~~~~~~~~ak~~g~~vi~IT~~~~s~l~~~ad~~i~~~~~~~~~~~~~~~~~s~~~~~~  174 (336)
                      .....+++|++|++|+||+|++++++++.||++|+++|+||++.+||+++.||++|.++.+.+   .....+.+.++++.
T Consensus        85 ~~~~~~~~dlvI~iS~SG~T~e~l~a~~~ak~~Ga~~iaIT~~~~S~La~~ad~~l~~~~g~E---~~va~Tksft~ql~  161 (344)
T 3fj1_A           85 DARLRLDRALCLAVSQSGKSPDIVAMTRNAGRDGALCVALTNDAASPLAGVSAHTIDIHAGPE---LSVAATKTFVTSAV  161 (344)
T ss_dssp             CCCCCCTTEEEEEEESSSCCHHHHHHHHHHHHTTCEEEEEESCTTSHHHHTSSEEEECCCCCC---CSTTCHHHHHHHHH
T ss_pred             cccCCCCCcEEEEEcCCCCCHHHHHHHHHHHHCCCcEEEEECCCCChHHHhcCEeeecCCCCc---ccccchHHHHHHHH
Confidence            445678999999999999999999999999999999999999999999999999999998766   34467788888887


Q ss_pred             HHHHHHHHHH
Q 019775          175 FGDTVAIAMM  184 (336)
Q Consensus       175 l~d~l~~~~~  184 (336)
                      .+-+|...+.
T Consensus       162 ~l~~l~~~~~  171 (344)
T 3fj1_A          162 AGLMLLADWA  171 (344)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHh
Confidence            7666665554

>1moq_A Glucosamine 6-phosphate synthase; glutamine amidotransferase; HET: GLP MES; 1.57A {Escherichia coli} SCOP: c.80.1.1 PDB: 1mor_A* 1mos_A*

Probab=99.85  E-value=8.6e-21  Score=173.83  Aligned_cols=235  Identities=13%  Similarity=0.094  Sum_probs=169.3

Q ss_pred             CCCcchHHHHHHHHHHHHHHHHHHhcCCh------hHH-HHHHHHHHcCCCeEEEEeccchHHHHHHHHHHHHhc-CCee
Q 019775           12 PHKVSENTLLDLFKSQQDHLNYFFQHLSL------PHT-LTFTQTLLKCRGTIFFTGVGKSGFVANKISQTLISL-GIKS   83 (336)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~------~~i-~~~~~~i~~a~~~I~i~G~G~s~~~a~~~~~~l~~~-g~~~   83 (336)
                      +.....+.+.+.+.++.+.++++.+....      +.+ +++++.+.++ ++|+++|+|+|+.+|.++++.|.++ |.++
T Consensus         4 ~k~~~~~~m~keI~eqP~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~-~~I~i~G~G~S~~~a~~~~~~l~~~~~~~~   82 (368)
T 1moq_A            4 DKGIYRHYMQKEIYEQPNAIKNTLTGRISHGQVDLSELGPNADELLSKV-EHIQILACGTSYNSGMVSRYWFESLAGIPC   82 (368)
T ss_dssp             CCTTCSSHHHHHHHTHHHHHHHHHTTSEETTEECCGGGCSSHHHHHHHC-CEEEEEECHHHHHHHHHHHHHHHHHSCCCE
T ss_pred             ccCCCccHHHHHHHHHHHHHHHHHHhhhccCcccHHHHHHHHHHHHhCC-CEEEEEEchHHHHHHHHHHHHHHHHhCCce
Confidence            34456677788888889999999876431      234 4567888999 6999999999999999999987764 6666


Q ss_pred             eecCCccccccccCCCCCCcEEEEEeCCCCcHHHHHHHHHHHHcC-CeEEEEeCCCCCccccccCEEEEcCCCcccCCCC
Q 019775           84 GFLNPLDALHGDIGILSSDDILVMFSKSGNTEELLKVVPCAKAKG-AYLVSVTSVEGNALAAVCDMNVHLPVERELCPFD  162 (336)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~dlvi~iS~sG~~~~~~~~~~~ak~~g-~~vi~IT~~~~s~l~~~ad~~i~~~~~~~~~~~~  162 (336)
                      ......+. ......++++|++|+||+||+|++++++++.||++| +++|+||++.+||+++.||++|.++.+.+   ..
T Consensus        83 ~~~~~~e~-~~~~~~~~~~dlvI~iS~SG~T~e~l~a~~~ak~~G~a~viaIT~~~~S~La~~ad~~l~~~~~~e---~~  158 (368)
T 1moq_A           83 DVEIASEF-RYRKSAVRRNSLMITLSQSGETADTLAGLRLSKELGYLGSLAICNVPGSSLVRESDLALMTNAGTE---IG  158 (368)
T ss_dssp             EEEEHHHH-HTSCCCCCTTEEEEEEESSSCCHHHHHHHHHHTTTTCSEEEEEESSTTCHHHHHSSEEEECCCCCC---CS
T ss_pred             EEEehhhH-hhhcCCCCCCCEEEEEeCCCCCHHHHHHHHHHHHcCCCeEEEEECCCCChHHHhCCEEEEcCCCCe---ec
Confidence            65443332 233556789999999999999999999999999999 99999999999999999999999998755   45


Q ss_pred             CCChhHHHHHHHHHHHHHHHHHhhcCCChHHHhhcCCCCchhhhhhhhhhhccccCCCCccccCCCcHHHHHHHHHhcCc
Q 019775          163 LAPVTSTAIQMVFGDTVAIAMMGARNLTRDEYAANHPAGRIGKSLIFKVQDVMKPQKELPVCKEGDLIMDQLVELTSKGC  242 (336)
Q Consensus       163 ~~~~~s~~~~~~l~d~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~~~~~~~v~~~~~~~~~~~~  242 (336)
                      ...+.|.+++++++++|+..+...++.+.+++.+...  .+.. +.-.++++.         ..+..+.+..+.+.  +.
T Consensus       159 ~a~t~s~~~~l~~l~~L~~~l~~~~~~~~~~~~~~~~--~l~~-l~~~~~~~l---------~~~~~~~~~a~~~~--~~  224 (368)
T 1moq_A          159 VASTKAFTTQLTVLLMLVAKLSRLKGLDASIEHDIVH--GLQA-LPSRIEQML---------SQDKRIEALAEDFS--DK  224 (368)
T ss_dssp             SSCSHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH--HHHH-HHHHHHHHT---------TCTTHHHHHHHHHT--TC
T ss_pred             ccchhhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHH--HHHH-HHHHHHHHH---------hhhHHHHHHHHHHh--CC
Confidence            6788999999999999999999887655554432210  0111 111122222         11233555555554  33


Q ss_pred             ceEEEEcCCCcEEEEeeHHHHHHH
Q 019775          243 GCLLVIDEEYHLIGTFTDGDLRRT  266 (336)
Q Consensus       243 ~~ipVvd~~~~~~G~it~~dl~~~  266 (336)
                      ..+.++. .|-..|+..+..|.-.
T Consensus       225 ~~~~~lG-~G~~~~~A~E~aLKl~  247 (368)
T 1moq_A          225 HHALFLG-RGDQYPIALEGALKLK  247 (368)
T ss_dssp             SEEEEEE-CGGGHHHHHHHHHHHH
T ss_pred             CcEEEEe-CCCCHHHHHHHHHHHH
Confidence            4566666 3555666666555533

>3tbf_A Glucosamine--fructose-6-phosphate aminotransferas [isomerizing]; structural genomics; 2.28A {Francisella tularensis subsp}

Probab=99.85  E-value=1.4e-20  Score=172.10  Aligned_cols=173  Identities=12%  Similarity=0.080  Sum_probs=145.5

Q ss_pred             CCCCcchHHHHHHHHHHHHHHHHHHhcC-Ch-----hHH-HHHHHHHHcCCCeEEEEeccchHHHHHHHHHHHHhc-CCe
Q 019775           11 LPHKVSENTLLDLFKSQQDHLNYFFQHL-SL-----PHT-LTFTQTLLKCRGTIFFTGVGKSGFVANKISQTLISL-GIK   82 (336)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~-----~~i-~~~~~~i~~a~~~I~i~G~G~s~~~a~~~~~~l~~~-g~~   82 (336)
                      .+....++.+.+-+.++.+.++++++.. +.     ..+ ..+.+.+.++ +||+++|+|+|+.+|..+.+.|.++ |++
T Consensus         5 ~~k~~~~h~m~kEI~eqP~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~a-~~I~i~G~GtS~~aa~~~~~~~~~~~g~~   83 (372)
T 3tbf_A            5 ASKDGYKHYMLKEIYEQPEAVSNTILASLADGEISLDSFDKRAKELFEKT-KHICIVACGTSYNAGMTAKYWIEKYAKVP   83 (372)
T ss_dssp             -CCTTCSSHHHHHHHTHHHHHHHHHHTTEETTEECGGGSCSTHHHHHHSC-CEEEEEECHHHHHHHHHHHHHHHHHTCCC
T ss_pred             hhcCCcHHHHHHHHHHHHHHHHHHHHhhhcccchhhhhhhHHHHHHHhcC-CEEEEEEechHHHHHHHHHHHHHHHhCCc
Confidence            4456677888888999999999999853 21     223 2345678899 6999999999999999999999985 888


Q ss_pred             eeecCCccccccccCCCCCCcEEEEEeCCCCcHHHHHHHHHHHHcC-CeEEEEeCCCCCccccccCEEEEcCCCcccCCC
Q 019775           83 SGFLNPLDALHGDIGILSSDDILVMFSKSGNTEELLKVVPCAKAKG-AYLVSVTSVEGNALAAVCDMNVHLPVERELCPF  161 (336)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~dlvi~iS~sG~~~~~~~~~~~ak~~g-~~vi~IT~~~~s~l~~~ad~~i~~~~~~~~~~~  161 (336)
                      +....+.+.. +....++++|++|+||+||+|++++++++.||++| +++|+||++.+||+++.||++|.++.+.+   .
T Consensus        84 ~~~~~~se~~-~~~~~~~~~dlvI~iS~SG~T~e~l~al~~ak~~G~a~~iaIT~~~~S~La~~aD~~l~~~~g~E---~  159 (372)
T 3tbf_A           84 CSVEIASEIR-YRDNVVVDGSLFVSISQSGETADTLESLRKSKKQNYVGSMCICNVPNSSLVRESDIAFMTKAGVE---I  159 (372)
T ss_dssp             EEEEEHHHHT-TSCCCCCTTEEEEEEESSSCCHHHHHHHHHHTTTTEEEEEEEESSSSSHHHHHSSEEEECCCCCC---C
T ss_pred             EEEechhHhh-hcccCCCCCCEEEEEeCCCCCHHHHHHHHHHHHcCCceEEEEcCCCCChHHHhCCEeeeecCCcc---c
Confidence            8877655443 23446889999999999999999999999999999 99999999999999999999999998765   3


Q ss_pred             CCCChhHHHHHHHHHHHHHHHHHhhcC
Q 019775          162 DLAPVTSTAIQMVFGDTVAIAMMGARN  188 (336)
Q Consensus       162 ~~~~~~s~~~~~~l~d~l~~~~~~~~~  188 (336)
                      ....+.|.+++++++++|+..+.+.++
T Consensus       160 ~~a~Tks~t~ql~~l~lL~~~l~~~~g  186 (372)
T 3tbf_A          160 GVASTKAFTTQLVALAIFTLVIAKLKN  186 (372)
T ss_dssp             BSSCSHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             cchhhHHHHHHHHHHHHHHHHHHHHcC
Confidence            457789999999999999999998865

>2a3n_A Putative glucosamine-fructose-6-phosphate aminotr; structural genomics, joint center for structural genomics; HET: MSE; 1.23A {Salmonella typhimurium}

Probab=99.85  E-value=4e-20  Score=168.49  Aligned_cols=131  Identities=17%  Similarity=0.222  Sum_probs=117.7

Q ss_pred             HHHHHHHHHHHHhcCChhHHHHHHHHHHc--CCCeEEEEeccchHHHHHHHHHHHHh-cCCeeeecCCccccccccCCCC
Q 019775           24 FKSQQDHLNYFFQHLSLPHTLTFTQTLLK--CRGTIFFTGVGKSGFVANKISQTLIS-LGIKSGFLNPLDALHGDIGILS  100 (336)
Q Consensus        24 ~~~~~~~l~~~~~~~~~~~i~~~~~~i~~--a~~~I~i~G~G~s~~~a~~~~~~l~~-~g~~~~~~~~~~~~~~~~~~~~  100 (336)
                      .+.+++.++++.+  +.+.++++++.|.+  + ++|+++|+|+|+.+|.++++.|.+ .|+++....+.+........++
T Consensus        25 ~~~~~~~i~~t~~--~~~~i~~~~~~i~~~~~-~~I~i~G~G~S~~~a~~~~~~l~~~~g~~~~~~~~~e~~~~~~~~l~  101 (355)
T 2a3n_A           25 QDEYLTSAREIIA--ARQKAEQVADEIYQAGF-SSLFFASVGGSLAPMMAINEFAKELTTLPVYVEQAAELIHKGNKRLN  101 (355)
T ss_dssp             HHHHHHHHHHHHT--THHHHHHHHHHHHHHCC-SCEEEEECGGGHHHHHHHHHHHHHHCCSCEEEEEHHHHHHHCCTTCC
T ss_pred             HHHHHHHHHHHHh--hHHHHHHHHHHHHhCCC-CEEEEEEccHHHHHHHHHHHHHHhhcCCeEEEcCcHHHHhhchhcCC
Confidence            4556788888888  78999999999998  8 699999999999999999999998 7999988777665554445678


Q ss_pred             CCcEEEEEeCCCCcHHHHHHHHHHHHcCCeEEEEeCCCCCccccccCEEEEcCCCcc
Q 019775          101 SDDILVMFSKSGNTEELLKVVPCAKAKGAYLVSVTSVEGNALAAVCDMNVHLPVERE  157 (336)
Q Consensus       101 ~~dlvi~iS~sG~~~~~~~~~~~ak~~g~~vi~IT~~~~s~l~~~ad~~i~~~~~~~  157 (336)
                      ++|++|+||+||+|++++++++.||++|+++|+||++.+||+++.||++|.++.+.+
T Consensus       102 ~~dlvI~iS~SG~t~e~~~a~~~ak~~Ga~vi~IT~~~~S~La~~ad~~l~~~~~~~  158 (355)
T 2a3n_A          102 KDSVVITLSKSGDTKESVAIAEWCKAQGIRVVAITKNADSPLAQAATWHIPMRHKNG  158 (355)
T ss_dssp             TTCEEEEECSSSCCHHHHHHHHHHHHTTCEEEEEESCTTSHHHHTCSEEEECCCSSC
T ss_pred             CCCEEEEEeCCCCCHHHHHHHHHHHHCCCeEEEEECCCCChhhHhCCEEEEeCCCcc
Confidence            999999999999999999999999999999999999999999999999999987654

>2poc_A D-fructose-6- PH, isomerase domain of glutamine-fructose-6-phosphat transaminase (isomerizing); glucosamine-6-phosphate synthase; HET: BG6 UD1; 1.80A {Candida albicans} PDB: 2put_A* 2puv_A* 2puw_A*

Probab=99.85  E-value=2.1e-20  Score=171.08  Aligned_cols=168  Identities=16%  Similarity=0.203  Sum_probs=137.4

Q ss_pred             cchHHHHHHHHHHHHHHHHHHhcC--------ChhHHHHHHHHHHcCCCeEEEEeccch---HHHHHHHHHHHHhcCCee
Q 019775           15 VSENTLLDLFKSQQDHLNYFFQHL--------SLPHTLTFTQTLLKCRGTIFFTGVGKS---GFVANKISQTLISLGIKS   83 (336)
Q Consensus        15 ~~~~~~~~~~~~~~~~l~~~~~~~--------~~~~i~~~~~~i~~a~~~I~i~G~G~s---~~~a~~~~~~l~~~g~~~   83 (336)
                      ...+.+.+-+.++.+.++++.+..        +.+.++++++.|.++ +||+++|+|+|   ..+|.++..++..++..+
T Consensus         4 ~~~~~m~kEI~eqP~~~~~~l~~~~~~~~~~~~~~~l~~~~~~l~~~-~~I~i~G~G~S~~~~~~a~~~~~~l~~~~~~~   82 (367)
T 2poc_A            4 PYKHFMQKEIFEQPDSAFNTMRGRIDFENCVVTLGGLKSWLSTIRRC-RRIIMIACGTSYHSCLATRSIFEELTEIPVSV   82 (367)
T ss_dssp             CCSSHHHHHHHTHHHHHHHHHTTTEETTTTEECCTTTGGGHHHHHTS-SEEEEEECHHHHHHHHHHHHHHHHHHCSCEEE
T ss_pred             CchhHHHHHHHHHHHHHHHHHHhhhcccccccCHHHHHHHHHHHhCC-CEEEEEEecHHHHHHHHHHHHHHHHhCCCeEE
Confidence            345567777888899999988753        346788999999999 69999999999   566777777776665555


Q ss_pred             eecCCccccccccCCCCCCcEEEEEeCCCCcHHHHHHHHHHHHcCCeEEEEeCCCCCccccccCEEEEcCCCcccCCCCC
Q 019775           84 GFLNPLDALHGDIGILSSDDILVMFSKSGNTEELLKVVPCAKAKGAYLVSVTSVEGNALAAVCDMNVHLPVERELCPFDL  163 (336)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~dlvi~iS~sG~~~~~~~~~~~ak~~g~~vi~IT~~~~s~l~~~ad~~i~~~~~~~~~~~~~  163 (336)
                      ....+.   ......++++|++|+||+||+|++++++++.||++|+++|+||++.+||++++||++|.++.+.+   ...
T Consensus        83 ~~~~e~---~~~~~~~~~~dlvI~iS~SG~T~e~l~a~~~Ak~~Ga~~iaIT~~~~S~La~~ad~~l~~~~g~E---~~~  156 (367)
T 2poc_A           83 ELASDF---LDRRSPVFRDDTCVFVSQSGETADSILALQYCLERGALTVGIVNSVGSSMSRQTHCGVHINAGPE---IGV  156 (367)
T ss_dssp             EEHHHH---HHTTCCCCTTEEEEEEESSSCCHHHHHHHHHHHHTTCEEEEEESSTTSHHHHHSSEEEECCCCCC---CSS
T ss_pred             Eehhhh---HhhccCCCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCCEEEEECCCCChHHHhCCEEEEcCCCCc---ccc
Confidence            433222   22345678999999999999999999999999999999999999999999999999999998655   344


Q ss_pred             CChhHHHHHHHHHHHHHHHHHhhcCC
Q 019775          164 APVTSTAIQMVFGDTVAIAMMGARNL  189 (336)
Q Consensus       164 ~~~~s~~~~~~l~d~l~~~~~~~~~~  189 (336)
                      ..+.|.++++.++++|+..++..++.
T Consensus       157 a~t~s~t~~l~~l~~L~~~l~~~~~~  182 (367)
T 2poc_A          157 ASTKAYTSQYIALVMFALSLSNDSIS  182 (367)
T ss_dssp             SCSHHHHHHHHHHHHHHHHHTTTBST
T ss_pred             cccHHHHHHHHHHHHHHHHHHHHcCc
Confidence            67899999999999999999887653

>2zj3_A Glucosamine--fructose-6-phosphate aminotransferase [isomerizing] 1; glucosamine-6-phosphate synthase, aldose/ketose isomerase, rossmann-like fold; HET: G6P; 1.90A {Homo sapiens} PDB: 2zj4_A* 2v4m_A*

Probab=99.84  E-value=1.5e-20  Score=172.40  Aligned_cols=168  Identities=18%  Similarity=0.228  Sum_probs=139.1

Q ss_pred             CcchHHHHHHHHHHHHHHHHHHhc--------CChhHHHHHHHHHHcCCCeEEEEeccchH---HHHHHHHHHHHhcCCe
Q 019775           14 KVSENTLLDLFKSQQDHLNYFFQH--------LSLPHTLTFTQTLLKCRGTIFFTGVGKSG---FVANKISQTLISLGIK   82 (336)
Q Consensus        14 ~~~~~~~~~~~~~~~~~l~~~~~~--------~~~~~i~~~~~~i~~a~~~I~i~G~G~s~---~~a~~~~~~l~~~g~~   82 (336)
                      ......+.+-+.++.+.++++.+.        ++.+.++++++.|.++ ++|+++|+|+|+   .+|.++..++..++..
T Consensus        13 ~~~~~~m~kEI~eqP~~~~~~l~~~~~~~~~~~~~~~l~~~~~~l~~~-~~I~i~G~G~S~~a~~~a~~~~~~l~~~~~~   91 (375)
T 2zj3_A           13 GNFSSFMQKEIFEQPESVVNTMRGRVNFDDYTVNLGGLKDHIKEIQRC-RRLILIACGTSYHAGVATRQVLEELTELPVM   91 (375)
T ss_dssp             TTSSSHHHHHHHTHHHHHHHHHTTTEETTTTEECCGGGTTTHHHHHHC-SEEEEEECHHHHHHHHHHHHHHHHHHCSCEE
T ss_pred             CCchhHHHHHHHHHHHHHHHHHHHhhcccccccCHHHHHHHHHHHhCC-CEEEEEEecHHHHHHHHHHHHHHHHhCCCeE
Confidence            445667777888889999999865        3457888999999999 699999999995   6677777777666666


Q ss_pred             eeecCCccccccccCCCCCCcEEEEEeCCCCcHHHHHHHHHHHHcCCeEEEEeCCCCCccccccCEEEEcCCCcccCCCC
Q 019775           83 SGFLNPLDALHGDIGILSSDDILVMFSKSGNTEELLKVVPCAKAKGAYLVSVTSVEGNALAAVCDMNVHLPVERELCPFD  162 (336)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~dlvi~iS~sG~~~~~~~~~~~ak~~g~~vi~IT~~~~s~l~~~ad~~i~~~~~~~~~~~~  162 (336)
                      +....+.   ......++++|++|+||+||+|++++++++.||++|+++|+||++.+||+++.||++|.++.+.+   ..
T Consensus        92 ~~~~~d~---~~~~~~~~~~dlvI~iS~SG~T~e~l~a~~~Ak~~Ga~~iaIT~~~~S~La~~ad~~l~~~~g~E---~~  165 (375)
T 2zj3_A           92 VELASDF---LDRNTPVFRDDVCFFLSQSGETADTLMGLRYCKERGALTVGITNTVGSSISRETDCGVHINAGPE---IG  165 (375)
T ss_dssp             EEEHHHH---HHTTCCCCTTEEEEEEESSSCCHHHHHHHHHHHHTTCEEEEEESCTTCHHHHHSSEEEECCCCCC---CC
T ss_pred             EEeechH---hhhccCCCCCCEEEEEeCCCCCHHHHHHHHHHHHcCCcEEEEECCCCChHHHhCCEeeeecCCcc---cc
Confidence            6543332   22345678999999999999999999999999999999999999999999999999999998755   34


Q ss_pred             CCChhHHHHHHHHHHHHHHHHHhhcC
Q 019775          163 LAPVTSTAIQMVFGDTVAIAMMGARN  188 (336)
Q Consensus       163 ~~~~~s~~~~~~l~d~l~~~~~~~~~  188 (336)
                      ...+.|.++++.++++|+..+...++
T Consensus       166 ~a~t~s~ta~l~~l~~L~~~l~~~~~  191 (375)
T 2zj3_A          166 VASTKAYTSQFVSLVMFALMMCDDRI  191 (375)
T ss_dssp             SSCSHHHHHHHHHHHHHHHHHTTTCG
T ss_pred             hhhhhhHHHHHHHHHHHHHHHHHHcC
Confidence            56789999999999999988887654

>3k6e_A CBS domain protein; streptococcus pneumoniae TIGR4, structural genomics, PSI-2, protein structure initiative; 2.81A {Streptococcus pneumoniae}

Probab=99.84  E-value=3.2e-20  Score=149.46  Aligned_cols=124  Identities=20%  Similarity=0.295  Sum_probs=109.1

Q ss_pred             hhhhhhhccccCCCCccccCCCcHHHHHHHHHhcCcceEEEEcCCCcEEEEeeHHHHHHHHHhcCCch---hhhhHhhhc
Q 019775          207 LIFKVQDVMKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRRTLKASGEGI---FKLTVGEMC  283 (336)
Q Consensus       207 ~~~~v~~im~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~it~~dl~~~~~~~~~~~---~~~~i~~~~  283 (336)
                      +..+++++|.|...++++++++|+.+|+.+|.+++++++||+|++|+++|++|.+|++..+.......   ...++.++|
T Consensus        13 l~~~~~~iM~P~~~v~~v~~~~t~~~a~~~m~~~~~s~~pVvd~~~~lvGiit~~Di~~~~~~~~~~~~~~~~~~v~~im   92 (156)
T 3k6e_A           13 LLGQEETFLTPAKNLAVLIDTHNADHATLLLSQMTYTRVPVVTDEKQFVGTIGLRDIMAYQMEHDLSQEIMADTDIVHMT   92 (156)
T ss_dssp             HHTTGGGGEEETTSSCCEETTSBHHHHHHHHTTSSSSEEEEECC-CBEEEEEEHHHHHHHHHHHTCCHHHHTTSBGGGTC
T ss_pred             hhccHHHhCcchhHeEEECCcCCHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEecchhhhhhhcccccccccccCHHHhh
Confidence            34578999999888899999999999999999999999999998899999999999998876543221   246789999


Q ss_pred             CCCCeeeCCCccHHHHHHHhcCCCCCccEeEEEeCCCcEEEEEehhhHhhc
Q 019775          284 NRSPRTIGPDAMAVEAMQKMESPPSPVQFLPVINRQNILIGIVTLHGLVSA  334 (336)
Q Consensus       284 ~~~~~~v~~~~~l~~~~~~~~~~~~~~~~l~Vv~~~~~~iGiit~~di~~~  334 (336)
                      .+++.++.+++++.++++.|.++  +  .+||+|++|+++|+||+.||+++
T Consensus        93 ~~~~~~v~~~~~l~~~~~~m~~~--~--~lpVVd~~g~l~GiiT~~Dil~~  139 (156)
T 3k6e_A           93 KTDVAVVSPDFTITEVLHKLVDE--S--FLPVVDAEGIFQGIITRKSILKA  139 (156)
T ss_dssp             BCSCCCBCTTCCHHHHHHHTTTS--S--EEEEECTTSBEEEEEEHHHHHHH
T ss_pred             cCCceecccccHHHHHHHHHHHc--C--CeEEEecCCEEEEEEEHHHHHHH
Confidence            99999999999999999999876  5  49999999999999999999874

>2aml_A SIS domain protein; 46906266, LMO0035 protein, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.83  E-value=6.4e-20  Score=168.11  Aligned_cols=169  Identities=11%  Similarity=0.096  Sum_probs=136.0

Q ss_pred             CcchHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHc-CCCeEEEEeccchHHHHHHHHHHHHhc-CCeeeecCCccc
Q 019775           14 KVSENTLLDLFKSQQDHLNYFFQHLSLPHTLTFTQTLLK-CRGTIFFTGVGKSGFVANKISQTLISL-GIKSGFLNPLDA   91 (336)
Q Consensus        14 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~i~~-a~~~I~i~G~G~s~~~a~~~~~~l~~~-g~~~~~~~~~~~   91 (336)
                      .-.++.+.+-+.++.+.++++++.. .+.++++++.|.+ + ++|+++|+|+|+.+|.++++.|.++ |.++....+.+.
T Consensus        11 ~~~~h~m~kEI~eqp~~~~~~~~~~-~~~l~~~~~~i~~~~-~~I~i~G~G~S~~~a~~~~~~l~~~~g~~v~~~~~~~~   88 (373)
T 2aml_A           11 HHMKPTMMTYINEEEEMCRVILADF-QTNAEKLESLVKNGA-KEWLILATGSSLNAAQSAKYYIENLADVRITIEEPFNH   88 (373)
T ss_dssp             GGGCCCHHHHHTTHHHHHHHHHHHH-HHHHHHHHTTCTTCC-CEEEEEECHHHHHHHHHHHHHHHHHSSCEEEEECHHHH
T ss_pred             ccchHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHccC-CEEEEEEecHHHHHHHHHHHHHHHHhCCcEEEECchhH
Confidence            3445666677777788888888754 2578888888765 6 6999999999999999999999985 899888754433


Q ss_pred             cccccCCCCCCcEEEEEeCCCCcHHHHHHHHHHHHc-CCeEEEEeCCCCCccccccCEEEEcCCCcccCCCCCCChhHHH
Q 019775           92 LHGDIGILSSDDILVMFSKSGNTEELLKVVPCAKAK-GAYLVSVTSVEGNALAAVCDMNVHLPVERELCPFDLAPVTSTA  170 (336)
Q Consensus        92 ~~~~~~~~~~~dlvi~iS~sG~~~~~~~~~~~ak~~-g~~vi~IT~~~~s~l~~~ad~~i~~~~~~~~~~~~~~~~~s~~  170 (336)
                       ......++++|++|+||+||+|++++++++.||++ |+++|+||++.+||+++.||++|.++.+.+   .....+.+.+
T Consensus        89 -~~~~~~~~~~dlvI~iS~SG~T~e~l~a~~~ak~~~Ga~vIaIT~~~~S~La~~ad~~l~~~~~~E---~~~~~t~s~t  164 (373)
T 2aml_A           89 -LYYEKLSSHLDLVIGISQSGQSTSTISALERVKKEASVPVVALTSDVTSEIAEFADITLDIGSGKE---RVGYVTKGFT  164 (373)
T ss_dssp             -HHHCCCCTTCCEEEEECSSSCBHHHHHHHHHHHHHCCCCEEEEESCTTSGGGGGCSEEEECSCCCC---CSSSCSHHHH
T ss_pred             -HHhccCCCCCCEEEEEcCCCCCHHHHHHHHHHHHhCCCcEEEEECCCCChHHHhcCcceecCCCcc---ccccccccHH
Confidence             23335588999999999999999999999999999 999999999999999999999999998765   2234566677


Q ss_pred             HHHHHHHHHHHHHHhhcC
Q 019775          171 IQMVFGDTVAIAMMGARN  188 (336)
Q Consensus       171 ~~~~l~d~l~~~~~~~~~  188 (336)
                      +++..+-++...+...++
T Consensus       165 s~~~~l~ll~~~l~~~~g  182 (373)
T 2aml_A          165 ATVLTLMLTGLHFAYKTV  182 (373)
T ss_dssp             HHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHhC
Confidence            777666667777766654

>3g68_A Putative phosphosugar isomerase; SIS domain, double-SIS DOMA protein, structural genomics, joint center for structural G JCSG; HET: MSE CIT; 1.80A {Clostridium difficile}

Probab=99.83  E-value=8.9e-20  Score=165.71  Aligned_cols=160  Identities=13%  Similarity=0.120  Sum_probs=129.6

Q ss_pred             HHHHHHHHHHHHHHHhcCChhHHHHHHHHHHcCCCeEEEEeccchHHHHHHHHHHHHh-cCCeeeecCCccccccccCCC
Q 019775           21 LDLFKSQQDHLNYFFQHLSLPHTLTFTQTLLKCRGTIFFTGVGKSGFVANKISQTLIS-LGIKSGFLNPLDALHGDIGIL   99 (336)
Q Consensus        21 ~~~~~~~~~~l~~~~~~~~~~~i~~~~~~i~~a~~~I~i~G~G~s~~~a~~~~~~l~~-~g~~~~~~~~~~~~~~~~~~~   99 (336)
                      .+.+.++.+.++++.+... +.++.+  ...++ +||+++|+|+|+.+|.++++.|.+ .|+++....+++... ....+
T Consensus         5 ~keI~eqP~~~~~~l~~~~-~~~~~~--~~~~~-~~I~i~G~G~S~~~a~~~~~~l~~~~g~~~~~~~~se~~~-~~~~~   79 (352)
T 3g68_A            5 QDYMLETPVRMREIISNAD-SLFNEV--KRTNL-KKIIITGSGTSYHSGVQVQPYLQNLLDIDVVKMYPFMITE-DTFKF   79 (352)
T ss_dssp             HHHHHTHHHHHHHHHHHHH-HHTTTG--GGSCC-SEEEEECSHHHHHHHHHHHHHHHHHCSSEEEEECGGGCCG-GGGSS
T ss_pred             HHHHHHHHHHHHHHHHhhH-HhhhHh--hhcCC-CEEEEEEeehHHHHHHHHHHHHHHHhCCcEEEEcchhhhh-cccCC
Confidence            3445556666666665421 111111  12566 699999999999999999999998 599999888766643 33455


Q ss_pred             C-CCcEEEEEeCCCCcHHHHHHHHHHHHcCCeEEEEeCCCCCccccccCEEEEcCCCcccCCCCCCChhHHHHHHHHHHH
Q 019775          100 S-SDDILVMFSKSGNTEELLKVVPCAKAKGAYLVSVTSVEGNALAAVCDMNVHLPVERELCPFDLAPVTSTAIQMVFGDT  178 (336)
Q Consensus       100 ~-~~dlvi~iS~sG~~~~~~~~~~~ak~~g~~vi~IT~~~~s~l~~~ad~~i~~~~~~~~~~~~~~~~~s~~~~~~l~d~  178 (336)
                      . ++|++|+||+||+|++++++++.||++|+++|+||++.+||++++||++|.++.+.+   .....+.+.+++++++++
T Consensus        80 ~~~~dlvI~iS~SG~T~e~l~a~~~ak~~ga~~iaIT~~~~S~La~~aD~~l~~~~g~E---~~va~tksf~~ql~~l~~  156 (352)
T 3g68_A           80 DNENTLVVGVSQGGSSYSTYNAMKLAEDKGCKIASMAGCKNALIDEISDYILTVNCGEE---KSGAKTKGYYCTKLNLML  156 (352)
T ss_dssp             CCTTEEEEEEESSSCCHHHHHHHHHHHHTTCEEEEEESSTTCGGGGGCSEECCCCCCCC---CCSSCSHHHHHHHHHHHH
T ss_pred             CCCCcEEEEEeCCCCCHHHHHHHHHHHHCCCCEEEEeCCCCChHHHhCCEEEEeCCCCC---ccccccHHHHHHHHHHHH
Confidence            5 999999999999999999999999999999999999999999999999999988766   335678899999999999


Q ss_pred             HHHHHHhhcC
Q 019775          179 VAIAMMGARN  188 (336)
Q Consensus       179 l~~~~~~~~~  188 (336)
                      |...+...++
T Consensus       157 La~~l~~~~g  166 (352)
T 3g68_A          157 LGLQIAREKG  166 (352)
T ss_dssp             HHHHHHHHTT
T ss_pred             HHHHHHHHcC
Confidence            9999998765

>3c3j_A Putative tagatose-6-phosphate ketose/aldose isome; tagatose-6-phosphate ketose/aldose isomerase, structural GEN PSI, MCSG; 1.80A {Escherichia coli}

Probab=99.82  E-value=9.2e-20  Score=167.80  Aligned_cols=164  Identities=21%  Similarity=0.217  Sum_probs=133.7

Q ss_pred             hHHHHHHHHHHHHHHHHHHhcCCh--hHHHHHHH-HHHcCCCeEEEEeccchHHHHHHHHHHHHh-cCCeeeecCCcccc
Q 019775           17 ENTLLDLFKSQQDHLNYFFQHLSL--PHTLTFTQ-TLLKCRGTIFFTGVGKSGFVANKISQTLIS-LGIKSGFLNPLDAL   92 (336)
Q Consensus        17 ~~~~~~~~~~~~~~l~~~~~~~~~--~~i~~~~~-~i~~a~~~I~i~G~G~s~~~a~~~~~~l~~-~g~~~~~~~~~~~~   92 (336)
                      ...+.+-+.++.+.++++.+..+.  ..+.++++ .+.++.++|+++|+|+|+.+|.++++.|.+ .|+++..+++.+..
T Consensus        13 ~~~m~kEI~eqP~~~~~~l~~~~~~~~~l~~~~~~~l~~~~~~I~i~G~GtS~~~a~~~~~~l~~~~g~~v~~~~~~~~~   92 (384)
T 3c3j_A           13 GTWTEEEIRHQPRAWIRSLTNIDALRSALNNFLEPLLRKENLRIILTGAGTSAFIGDIIAPWLASHTGKNFSAVPTTDLV   92 (384)
T ss_dssp             CCHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCEEEEECSTHHHHHHHHHHHHHHHHHCSEEEECCHHHHH
T ss_pred             chhHHHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHhcCCCEEEEEEehHHHHHHHHHHHHHHHHhCCcEEEeccHHHH
Confidence            666777788889999988876632  34566664 355651499999999999999999999987 69999998765444


Q ss_pred             ccccCCC--CCCcEEEEEeCCCCcHHHHHHHHHHHHc--CCeEEEEeCCCCCccccccC-----EEEEcCCCcccCCCCC
Q 019775           93 HGDIGIL--SSDDILVMFSKSGNTEELLKVVPCAKAK--GAYLVSVTSVEGNALAAVCD-----MNVHLPVERELCPFDL  163 (336)
Q Consensus        93 ~~~~~~~--~~~dlvi~iS~sG~~~~~~~~~~~ak~~--g~~vi~IT~~~~s~l~~~ad-----~~i~~~~~~~~~~~~~  163 (336)
                      .......  +++|++|+||+||+|++++++++.||++  |+++|+||++.+|+|+++||     ++|.++...+  ....
T Consensus        93 ~~~~~~~~~~~~dlvI~iS~SG~T~e~l~a~~~ak~~~~ga~~iaIT~~~~S~La~~ad~~~~~~~l~~~~~~~--e~~~  170 (384)
T 3c3j_A           93 TNPMDYLNPAHPLLLISFGRSGNSPESVAAVELANQFVPECYHLPITCNEAGALYQNAINSDNAFALLMPAETH--DRGF  170 (384)
T ss_dssp             HCHHHHCCTTSCEEEEEEESSSCCHHHHHHHHHHHHHCSSEEEEEEESCTTSHHHHHHHTCTTBCCEECCGGGS--CCSS
T ss_pred             hChhhhhCCCCCeEEEEEeCCcCCHHHHHHHHHHHhhCCCCCEEEEECCCCCHHHhhhccCCcEEEEEecCCCc--ceee
Confidence            3333333  6899999999999999999999999999  99999999999999999999     9999987333  2455


Q ss_pred             CChhHHHHHHHHHHHHHHH
Q 019775          164 APVTSTAIQMVFGDTVAIA  182 (336)
Q Consensus       164 ~~~~s~~~~~~l~d~l~~~  182 (336)
                      ..++|.+++++++++|+..
T Consensus       171 a~t~s~t~~l~~l~~L~~~  189 (384)
T 3c3j_A          171 AMTSSITTMMASCLAVFAP  189 (384)
T ss_dssp             SCSHHHHHHHHHHHHHHCT
T ss_pred             eehHHHHHHHHHHHHHHHh
Confidence            7788999999999988764

>3hf7_A Uncharacterized CBS-domain protein; CSB-domain PAIR, AMP, PSI, MCSG, STR genomics, midwest center for structural genomics; HET: AMP; 2.75A {Klebsiella pneumoniae subsp}

Probab=99.82  E-value=5.2e-20  Score=143.58  Aligned_cols=122  Identities=14%  Similarity=0.135  Sum_probs=106.8

Q ss_pred             hhhhhccccCCCCccccCCCcHHHHHHHHHhcCcceEEEEcC-CCcEEEEeeHHHHHHHHHhcCCchhhhhHhhhcCCCC
Q 019775          209 FKVQDVMKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVIDE-EYHLIGTFTDGDLRRTLKASGEGIFKLTVGEMCNRSP  287 (336)
Q Consensus       209 ~~v~~im~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~-~~~~~G~it~~dl~~~~~~~~~~~~~~~i~~~~~~~~  287 (336)
                      ++|+++|.+...+++++++.++.++++.|.+++++.+||+++ +|+++|+++.+||+..+.... .....++.++| +++
T Consensus         2 ~~v~~iM~~~~~~~~v~~~~~v~~a~~~m~~~~~~~~pVv~~~~~~lvGivt~~dl~~~~~~~~-~~~~~~v~~~m-~~~   79 (130)
T 3hf7_A            2 VSVNDIMVPRNEIVGIDINDDWKSIVRQLTHSPHGRIVLYRDSLDDAISMLRVREAYRLMTEKK-EFTKEIMLRAA-DEI   79 (130)
T ss_dssp             CBHHHHSEEGGGCCEEETTSCHHHHHHHHHTCSSSEEEEESSSGGGEEEEEEHHHHHHHHTSSS-CCCHHHHHHHS-BCC
T ss_pred             cCHHHhCccHHHEEEEcCCCCHHHHHHHHHHCCCCeEEEEcCCCCcEEEEEEHHHHHHHHhccC-ccchhhHHHhc-cCC
Confidence            578999987544779999999999999999999999999975 589999999999999876522 12256789999 667


Q ss_pred             eeeCCCccHHHHHHHhcCCCCCccEeEEEeCCCcEEEEEehhhHhhc
Q 019775          288 RTIGPDAMAVEAMQKMESPPSPVQFLPVINRQNILIGIVTLHGLVSA  334 (336)
Q Consensus       288 ~~v~~~~~l~~~~~~~~~~~~~~~~l~Vv~~~~~~iGiit~~di~~~  334 (336)
                      .++.+++++.++++.|.++  +.+.+||+|++|+++|+||+.|++++
T Consensus        80 ~~v~~~~~l~~~~~~m~~~--~~~~~~Vvd~~g~lvGiit~~Dil~~  124 (130)
T 3hf7_A           80 YFVPEGTPLSTQLVKFQRN--KKKVGLVVDEYGDIQGLVTVEDILEE  124 (130)
T ss_dssp             CEEETTCBHHHHHHHHHHH--CCCEEEEECTTSCEEEEEEHHHHHHH
T ss_pred             eEeCCCCcHHHHHHHHHhc--CCeEEEEEcCCCCEEEEeeHHHHHHH
Confidence            8999999999999999999  89999999988999999999999874

>3fkj_A Putative phosphosugar isomerases; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 2.12A {Salmonella typhimurium LT2}

Probab=99.81  E-value=9.7e-20  Score=165.05  Aligned_cols=121  Identities=17%  Similarity=0.201  Sum_probs=110.1

Q ss_pred             HHhcCChhHHHHHHHHHH---cCCCeEEEEeccchHHHHHHHHHHHHhc--CCeeeecCCccccccccCCCCCCcEEEEE
Q 019775           34 FFQHLSLPHTLTFTQTLL---KCRGTIFFTGVGKSGFVANKISQTLISL--GIKSGFLNPLDALHGDIGILSSDDILVMF  108 (336)
Q Consensus        34 ~~~~~~~~~i~~~~~~i~---~a~~~I~i~G~G~s~~~a~~~~~~l~~~--g~~~~~~~~~~~~~~~~~~~~~~dlvi~i  108 (336)
                      +.+.++.+.++++++.|.   ++ ++|+++|+|+|+.+|.++.+.|.++  |+++....+.+........++++|++|+|
T Consensus        18 t~~~l~~~~i~~~~~~i~~~~~a-~~I~i~G~GtS~~aa~~~~~~l~~~~~g~~~~~~~~~e~~~~~~~~l~~~dlvI~i   96 (347)
T 3fkj_A           18 QGMSVAHENARRIISDILGKQNI-ERVWFVGCGGSLTGFWPGKYFLDCEASKLAVGYITSNEFVHATPKALGKNSVVILA   96 (347)
T ss_dssp             CCCCHHHHHHHHHHHHHHTTSCC-CEEEEEESTHHHHTTHHHHHHHHHHCSSCEEEEEEHHHHHHSCCTTCSTTEEEEEE
T ss_pred             HHhhcCHHHHHHHHHHHHhhCCC-CEEEEEEehHHHHHHHHHHHHHHHHhCCCeEEEeCcHHHHhhCcCCCCCCCEEEEE
Confidence            445567899999999999   88 6999999999999999999999976  89998887776665555568899999999


Q ss_pred             eCCCCcHHHHHHHHHHHHcCCeEEEEeCCCCCccccccCEEEEcCCC
Q 019775          109 SKSGNTEELLKVVPCAKAKGAYLVSVTSVEGNALAAVCDMNVHLPVE  155 (336)
Q Consensus       109 S~sG~~~~~~~~~~~ak~~g~~vi~IT~~~~s~l~~~ad~~i~~~~~  155 (336)
                      |+||+|++++++++.||++|+++|+||++.+||+++.||++|.++.+
T Consensus        97 S~SG~T~e~l~a~~~ak~~Ga~~iaIT~~~~S~La~~ad~~l~~~~g  143 (347)
T 3fkj_A           97 SQQGNTAETVAAARVAREKGAATIGLVYQPDTPLCEYSDYIIEYQWA  143 (347)
T ss_dssp             ESSSCCHHHHHHHHHHHHHTCEEEEEESSTTCHHHHTCSEEEECBCC
T ss_pred             eCCCCcHHHHHHHHHHHHCCCcEEEEeCCCCChHHhhcCeEEEeccC
Confidence            99999999999999999999999999999999999999999999987

>4esy_A CBS domain containing membrane protein; structural genomics, PSI-biology; 2.01A {Sphaerobacter thermophilus}

Probab=99.81  E-value=3.8e-20  Score=151.23  Aligned_cols=122  Identities=22%  Similarity=0.337  Sum_probs=106.4

Q ss_pred             hhhhhhccccCCCCccccCCCcHHHHHHHHHhcCcceEEEEcCCCcEEEEeeHHHHHHHHHhcC----------------
Q 019775          208 IFKVQDVMKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRRTLKASG----------------  271 (336)
Q Consensus       208 ~~~v~~im~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~it~~dl~~~~~~~~----------------  271 (336)
                      .++|+++|.++  ++++++++|+.+|++.|.+++++++||+|++|+++|+||.+||+.......                
T Consensus        17 ~~~V~diM~~~--v~~v~~~~tl~~a~~~m~~~~~~~~pVvd~~g~lvGiit~~Dll~~~~~~~~~~~~~~~~~~~~~~~   94 (170)
T 4esy_A           17 QVPIRDILTSP--VVTVREDDTLDAVAKTMLEHQIGCAPVVDQNGHLVGIITESDFLRGSIPFWIYEASEILSRAIPAPE   94 (170)
T ss_dssp             TSBGGGGCCSC--CCCEETTSBHHHHHHHHHHTTCSEEEEECTTSCEEEEEEGGGGGGGTCCTTHHHHHHHHTTTSCHHH
T ss_pred             CCCHHHhcCCC--CcEECCcCcHHHHHHHHHHcCCeEEEEEcCCccEEEEEEHHHHHHHHhhccccchhhhhhhccchhh
Confidence            46899999987  669999999999999999999999999999999999999999975432110                


Q ss_pred             -----CchhhhhHhhhcCCCCeeeCCCccHHHHHHHhcCCCCCccEeEEEeCCCcEEEEEehhhHhhc
Q 019775          272 -----EGIFKLTVGEMCNRSPRTIGPDAMAVEAMQKMESPPSPVQFLPVINRQNILIGIVTLHGLVSA  334 (336)
Q Consensus       272 -----~~~~~~~i~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~l~Vv~~~~~~iGiit~~di~~~  334 (336)
                           ......++.++|.+++.++.+++++.++++.|.++  +.+.+||+|+ |+++|+||+.||+++
T Consensus        95 ~~~~~~~~~~~~v~~im~~~~~tv~~~~~l~~a~~~m~~~--~~~~lpVvd~-g~lvGivt~~Dil~~  159 (170)
T 4esy_A           95 VEHLFETGRKLTASAVMTQPVVTAAPEDSVGSIADQMRRH--GIHRIPVVQD-GVPVGIVTRRDLLKL  159 (170)
T ss_dssp             HHHHHHHHTTCBHHHHCBCCSCCBCTTSBHHHHHHHHHHT--TCSEEEEEET-TEEEEEEEHHHHTTT
T ss_pred             HHhhhccccccchhhhcccCcccCCcchhHHHHHHHHHHc--CCcEEEEEEC-CEEEEEEEHHHHHHH
Confidence                 00113578999999999999999999999999999  9999999986 999999999999975

>2bpl_A Glucosamine--fructose-6-phosphate aminotransferase [isomerizing]; amidotransferase, ammonia channeling, glucosamine 6- phosphate synthase; HET: F6R; 2.05A {Escherichia coli} SCOP: c.80.1.1 d.153.1.1 PDB: 1jxa_A* 2j6h_A* 2vf4_X 2vf5_X* 3ooj_A*

Probab=99.81  E-value=2.8e-19  Score=173.78  Aligned_cols=180  Identities=13%  Similarity=0.087  Sum_probs=148.1

Q ss_pred             CCCcchHHHHHHHHHHHHHHHHHHhcCC---hhHHHHHH----HHHHcCCCeEEEEeccchHHHHHHHHHHHHh-cCCee
Q 019775           12 PHKVSENTLLDLFKSQQDHLNYFFQHLS---LPHTLTFT----QTLLKCRGTIFFTGVGKSGFVANKISQTLIS-LGIKS   83 (336)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~i~~~~----~~i~~a~~~I~i~G~G~s~~~a~~~~~~l~~-~g~~~   83 (336)
                      +.....+.+.+.+.++.+.++++.+...   ...++.+.    +.+.++ ++|+++|+|+|+.+|..+.+.+.+ .|.++
T Consensus       244 ~k~~~~~~m~keI~eqp~~~~~~l~~~~~~~~~~l~~~~~~~~~~i~~~-~~I~i~G~G~S~~~a~~~~~~~~~~~~~~~  322 (608)
T 2bpl_A          244 DKGIYRHYMQKEIYEQPNAIKNTLTGRISHGQVDLSELGPNADELLSKV-EHIQILACGTSYNSGMVSRYWFESLAGIPC  322 (608)
T ss_dssp             CCTTCSSHHHHHHHTHHHHHHHHHTTSEETTEECCGGGCTTHHHHHHHC-CEEEEEECHHHHHHHHHHHHHHHHHSCCCE
T ss_pred             hcCCcHHHHHHHHHHHHHHHHHHHhhhhhcCccchhhhccchhhHhcCC-CEEEEEEehHHHHHHHHHHHHHHHHhCCCE
Confidence            3344567888889999999999998752   22244443    568888 699999999999999999988888 58888


Q ss_pred             eecCCccccccccCCCCCCcEEEEEeCCCCcHHHHHHHHHHHHcC-CeEEEEeCCCCCccccccCEEEEcCCCcccCCCC
Q 019775           84 GFLNPLDALHGDIGILSSDDILVMFSKSGNTEELLKVVPCAKAKG-AYLVSVTSVEGNALAAVCDMNVHLPVERELCPFD  162 (336)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~dlvi~iS~sG~~~~~~~~~~~ak~~g-~~vi~IT~~~~s~l~~~ad~~i~~~~~~~~~~~~  162 (336)
                      .+..+.+.. +....++++|++|+||+||+|++++++++.||++| +++|+||++.+|+|++.||+++.++.+.+   ..
T Consensus       323 ~~~~~~e~~-~~~~~~~~~dlvI~iS~SG~T~e~l~a~~~ak~~G~a~~IaIT~~~~S~La~~ad~~l~~~~~~E---~~  398 (608)
T 2bpl_A          323 DVEIASEFR-YRKSAVRRNSLMITLSQSGETADTLAGLRLSKELGYLGSLAICNVPGSSLVRESDLALMTNAGTE---IG  398 (608)
T ss_dssp             EEEEHHHHT-TSCCCCCTTEEEEEEESSSCCHHHHHHHHHHHHTTCSEEEEEESSTTCHHHHHSSEEEECCCCCC---CS
T ss_pred             EEEehhHhh-ccCCCCCCCCEEEEEeCCcCCHHHHHHHHHHHHcCCCeEEEEECCCCCHHHHhcCEEEEecCCce---ee
Confidence            776544432 22346789999999999999999999999999999 99999999999999999999999988765   45


Q ss_pred             CCChhHHHHHHHHHHHHHHHHHhhcCCChHHHhh
Q 019775          163 LAPVTSTAIQMVFGDTVAIAMMGARNLTRDEYAA  196 (336)
Q Consensus       163 ~~~~~s~~~~~~l~d~l~~~~~~~~~~~~~~~~~  196 (336)
                      ..++.|.+++++++++|+..+...++.+.+++.+
T Consensus       399 ~a~t~s~t~~l~~~~lL~~~l~~~~~~~~~~~~~  432 (608)
T 2bpl_A          399 VASTKAFTTQLTVLLMLVAKLSKLKGLDASIEHD  432 (608)
T ss_dssp             SSCSHHHHHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred             ecchHHHHHHHHHHHHHHHHHHHhcCCChHHHHH
Confidence            5788999999999999999999988766555443

>3i8n_A Uncharacterized protein VP2912; APC64273.1, vibrio parahaemolyticus RIMD 2210633, structural genomics, PSI-2; 2.15A {Vibrio parahaemolyticus}

Probab=99.81  E-value=5.5e-20  Score=143.38  Aligned_cols=121  Identities=17%  Similarity=0.196  Sum_probs=107.5

Q ss_pred             hhhhhhccccCCCCccccCCCcHHHHHHHHHhcCcceEEEEcCC-CcEEEEeeHHHHHHHHHhcCCchhhhhHhhhcCCC
Q 019775          208 IFKVQDVMKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEE-YHLIGTFTDGDLRRTLKASGEGIFKLTVGEMCNRS  286 (336)
Q Consensus       208 ~~~v~~im~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~-~~~~G~it~~dl~~~~~~~~~~~~~~~i~~~~~~~  286 (336)
                      .++|+++|.+...+++++++.++.++++.|.+++++.+||+|++ |+++|+|+.+||+.......   ...++.++|. +
T Consensus         5 ~~~v~~iM~~~~~v~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~~~~~~Givt~~dl~~~~~~~~---~~~~v~~~m~-~   80 (130)
T 3i8n_A            5 DVPVTQVMTPRPVVFRVDATMTINEFLDKHKDTPFSRPLVYSEQKDNIIGFVHRLELFKMQQSGS---GQKQLGAVMR-P   80 (130)
T ss_dssp             --CCTTTSCCBCCCCEEETTSBHHHHHHHTTTCSCSCCEEESSSTTCEEEECCHHHHHHHHHTTT---TTSBHHHHSE-E
T ss_pred             cCCHhhCCCcHHHEEEEcCCCCHHHHHHHHHhCCCCEEEEEeCCCCcEEEEEEHHHHHHHHhcCC---CcCCHHHHhc-C
Confidence            46899999987667789999999999999999999999999977 89999999999999876533   2567899994 5


Q ss_pred             CeeeCCCccHHHHHHHhcCCCCCccEeEEEeCCCcEEEEEehhhHhhc
Q 019775          287 PRTIGPDAMAVEAMQKMESPPSPVQFLPVINRQNILIGIVTLHGLVSA  334 (336)
Q Consensus       287 ~~~v~~~~~l~~~~~~~~~~~~~~~~l~Vv~~~~~~iGiit~~di~~~  334 (336)
                      +.++.+++++.++++.|.++  +.+.+||+|++|+++|+||+.|++++
T Consensus        81 ~~~v~~~~~l~~~~~~m~~~--~~~~~~Vvd~~g~~vGivt~~dil~~  126 (130)
T 3i8n_A           81 IQVVLNNTALPKVFDQMMTH--RLQLALVVDEYGTVLGLVTLEDIFEH  126 (130)
T ss_dssp             CCEEETTSCHHHHHHHHHHH--TCCEEEEECTTSCEEEEEEHHHHHHH
T ss_pred             CcCcCCCCcHHHHHHHHHHc--CCeEEEEEcCCCCEEEEEEHHHHHHH
Confidence            78999999999999999999  89999999998999999999999874

>3lv9_A Putative transporter; CBS domain, PSI, MCSG, structural genomics, protein structur initiative, midwest center for structural genomics; 2.40A {Clostridium difficile 630}

Probab=99.81  E-value=1.6e-19  Score=143.94  Aligned_cols=120  Identities=18%  Similarity=0.246  Sum_probs=108.6

Q ss_pred             hhhhhhccccCCCCccccCCCcHHHHHHHHHhcCcceEEEEcCC-CcEEEEeeHHHHHHHHHhcCCchhhhhHhhhcCCC
Q 019775          208 IFKVQDVMKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEE-YHLIGTFTDGDLRRTLKASGEGIFKLTVGEMCNRS  286 (336)
Q Consensus       208 ~~~v~~im~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~-~~~~G~it~~dl~~~~~~~~~~~~~~~i~~~~~~~  286 (336)
                      .++|+++|.+...+++++++.++.++++.|.+++++.+||+|++ |+++|+||.+||+..+....    ..++.++| ++
T Consensus        22 ~~~v~diM~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~~~~lvGivt~~dl~~~~~~~~----~~~v~~~m-~~   96 (148)
T 3lv9_A           22 EKKIREIMVPRTDMVCIYESDSEEKILAILKEEGVTRYPVCRKNKDDILGFVHIRDLYNQKINEN----KIELEEIL-RD   96 (148)
T ss_dssp             TCBGGGTSEETTTCCCEETTCCHHHHHHHHHHSCCSEEEEESSSTTSEEEEEEHHHHHHHHHHHS----CCCGGGTC-BC
T ss_pred             CCCHHHccccHHHeEEECCCCCHHHHHHHHHHCCCCEEEEEcCCCCcEEEEEEHHHHHHHHhcCC----CccHHHhc-CC
Confidence            46899999994446799999999999999999999999999987 89999999999999876532    46789999 88


Q ss_pred             CeeeCCCccHHHHHHHhcCCCCCccEeEEEeCCCcEEEEEehhhHhhc
Q 019775          287 PRTIGPDAMAVEAMQKMESPPSPVQFLPVINRQNILIGIVTLHGLVSA  334 (336)
Q Consensus       287 ~~~v~~~~~l~~~~~~~~~~~~~~~~l~Vv~~~~~~iGiit~~di~~~  334 (336)
                      +.++.+++++.++++.|.++  +.+.+||+|++|+++|+||+.||+++
T Consensus        97 ~~~v~~~~~l~~~~~~m~~~--~~~~l~Vvd~~g~~~Giit~~dil~~  142 (148)
T 3lv9_A           97 IIYISENLTIDKALERIRKE--KLQLAIVVDEYGGTSGVVTIEDILEE  142 (148)
T ss_dssp             CEEEETTSBHHHHHHHHHHH--TCSEEEEECTTSSEEEEEEHHHHHHH
T ss_pred             CeEECCCCCHHHHHHHHHhc--CCeEEEEEeCCCCEEEEEEHHHHHHH
Confidence            89999999999999999999  89999999998999999999999874

>3eua_A Putative fructose-aminoacid-6-phosphate deglycase; putative phosphosugar isomerase, structural genomics, joint for structural genomics, JCSG; HET: MSE FLC; 1.90A {Bacillus subtilis}

Probab=99.81  E-value=2.5e-19  Score=161.48  Aligned_cols=117  Identities=21%  Similarity=0.256  Sum_probs=107.8

Q ss_pred             hhHHHHHHHHHH--cCCCeEEEEeccchHHHHHHHHHHHHhc--CCeeeecCCccccccccCCCCCCcEEEEEeCCCCcH
Q 019775           40 LPHTLTFTQTLL--KCRGTIFFTGVGKSGFVANKISQTLISL--GIKSGFLNPLDALHGDIGILSSDDILVMFSKSGNTE  115 (336)
Q Consensus        40 ~~~i~~~~~~i~--~a~~~I~i~G~G~s~~~a~~~~~~l~~~--g~~~~~~~~~~~~~~~~~~~~~~dlvi~iS~sG~~~  115 (336)
                      .++++++++.|.  ++ ++|+++|+|+|+.+|.++++.|.++  |+++....+.+........++++|++|++|+||+|+
T Consensus        10 ~~~i~~~v~~i~~~~~-~~I~i~G~GtS~~aa~~~~~~l~~~~~g~~~~~~~~~e~~~~~~~~l~~~dlvI~iS~SG~T~   88 (329)
T 3eua_A           10 NREVQAFLQDLKGKTI-DHVFFVACGGSSAIMYPSKYVFDRESKSINSDLYSANEFIQRNPVQLGEKSLVILCSHSGNTP   88 (329)
T ss_dssp             CHHHHHHHHHHTTCCC-CEEEEEECTHHHHTTHHHHHHHHHHCSSCEEEEEEHHHHHHHCCTTCSTTEEEEEEESSSCCH
T ss_pred             HHHHHHHHHHHHHCCC-CEEEEEEccHHHHHHHHHHHHHHHhcCCCeEEEEccHHHHhcCccCCCCCcEEEEEcCCCCCH
Confidence            478999999999  78 6999999999999999999999987  999999887766655555688999999999999999


Q ss_pred             HHHHHHHHHHHcCCeEEEEeCCCCCccccccCEEEEcCCCcc
Q 019775          116 ELLKVVPCAKAKGAYLVSVTSVEGNALAAVCDMNVHLPVERE  157 (336)
Q Consensus       116 ~~~~~~~~ak~~g~~vi~IT~~~~s~l~~~ad~~i~~~~~~~  157 (336)
                      +++++++.||++|+++|+||++.+||+++.||++|.++.+.+
T Consensus        89 e~l~a~~~ak~~Ga~~iaIT~~~~S~La~~ad~~l~~~~g~e  130 (329)
T 3eua_A           89 ETVKAAAFARGKGALTIAMTFKPESPLAQEAQYVAQYDWGDE  130 (329)
T ss_dssp             HHHHHHHHHHHTTCEEEEEESCTTSHHHHHSSEEEECCCSTT
T ss_pred             HHHHHHHHHHHCCCCEEEEECCCCChHHHhCCEEEEeCCCCc
Confidence            999999999999999999999999999999999999998766

>3nqr_A Magnesium and cobalt efflux protein CORC; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: AMP; 2.00A {Salmonella typhimurium}

Probab=99.80  E-value=6.5e-20  Score=142.38  Aligned_cols=120  Identities=16%  Similarity=0.253  Sum_probs=106.3

Q ss_pred             hhhhhccccCCCCccccCCCcHHHHHHHHHhcCcceEEEEcCC-CcEEEEeeHHHHHHHHHhcCCchhhhhHhhhcCCCC
Q 019775          209 FKVQDVMKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEE-YHLIGTFTDGDLRRTLKASGEGIFKLTVGEMCNRSP  287 (336)
Q Consensus       209 ~~v~~im~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~-~~~~G~it~~dl~~~~~~~~~~~~~~~i~~~~~~~~  287 (336)
                      ++|+++|.+...+++++++.++.++++.|.+++++.+||+|++ |+++|+||.+||+..+....   ...++.++|.+ +
T Consensus         3 ~~v~diM~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~~~~~vGivt~~dl~~~~~~~~---~~~~v~~~m~~-~   78 (127)
T 3nqr_A            3 QRVRDIMIPRSQMITLKRNQTLDECLDVIIESAHSRFPVISEDKDHIEGILMAKDLLPFMRSDA---EAFSMDKVLRT-A   78 (127)
T ss_dssp             CBHHHHSEEGGGCCCEETTCCHHHHHHHHHHHCCSEEEEESSSTTCEEEEEEGGGGGGGGSTTC---CCCCHHHHCBC-C
T ss_pred             cCHHHhcccHHHeEEEcCCCCHHHHHHHHHhCCCCEEEEEcCCCCcEEEEEEHHHHHHHHhccC---CCCCHHHHcCC-C
Confidence            5789999975446689999999999999999999999999987 89999999999998764322   25678999965 6


Q ss_pred             eeeCCCccHHHHHHHhcCCCCCccEeEEEeCCCcEEEEEehhhHhhc
Q 019775          288 RTIGPDAMAVEAMQKMESPPSPVQFLPVINRQNILIGIVTLHGLVSA  334 (336)
Q Consensus       288 ~~v~~~~~l~~~~~~~~~~~~~~~~l~Vv~~~~~~iGiit~~di~~~  334 (336)
                      .++.+++++.++++.|.++  +.+.+||+|++|+++|+||+.||+++
T Consensus        79 ~~v~~~~~l~~a~~~m~~~--~~~~lpVvd~~g~~~Giit~~dll~~  123 (127)
T 3nqr_A           79 VVVPESKRVDRMLKEFRSQ--RYHMAIVIDEFGGVSGLVTIEDILEL  123 (127)
T ss_dssp             CEEETTCBHHHHHHHHHHT--TCCEEEEECTTSCEEEEEEHHHHHHH
T ss_pred             eEECCCCcHHHHHHHHHhc--CCeEEEEEeCCCCEEEEEEHHHHHHH
Confidence            7899999999999999999  99999999988999999999999875

>3kpb_A Uncharacterized protein MJ0100; CBS domain, S-adenosylmethionine, conformational change, unknown function; HET: SAM; 1.60A {Methanocaldococcus jannaschii} SCOP: d.37.1.0 PDB: 3kpd_A* 3kpc_A*

Probab=99.80  E-value=3.3e-19  Score=137.14  Aligned_cols=117  Identities=23%  Similarity=0.276  Sum_probs=107.1

Q ss_pred             hhhhhccccCCCCccccCCCcHHHHHHHHHhcCcceEEEEcCCCcEEEEeeHHHHHHHHHhcCCchhhhhHhhhcCCCCe
Q 019775          209 FKVQDVMKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRRTLKASGEGIFKLTVGEMCNRSPR  288 (336)
Q Consensus       209 ~~v~~im~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~it~~dl~~~~~~~~~~~~~~~i~~~~~~~~~  288 (336)
                      ++|+++|.++  +++++++.++.++++.|.+++.+.+||+|++|+++|+++.+|+...+...     ..++.++|.+++.
T Consensus         1 ~~v~~im~~~--~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~G~vt~~dl~~~~~~~-----~~~v~~~~~~~~~   73 (122)
T 3kpb_A            1 TLVKDILSKP--PITAHSNISIMEAAKILIKHNINHLPIVDEHGKLVGIITSWDIAKALAQN-----KKTIEEIMTRNVI   73 (122)
T ss_dssp             CBHHHHCCSC--CCCEETTSBHHHHHHHHHHHTCSCEEEECTTSBEEEEECHHHHHHHHHTT-----CCBGGGTSBSSCC
T ss_pred             CchHHhhCCC--CEEeCCCCcHHHHHHHHHHcCCCeEEEECCCCCEEEEEEHHHHHHHHHhc-----ccCHHHHhcCCCe
Confidence            3689999987  56999999999999999999999999999899999999999999987652     2479999999999


Q ss_pred             eeCCCccHHHHHHHhcCCCCCccEeEEEeCCCcEEEEEehhhHhhc
Q 019775          289 TIGPDAMAVEAMQKMESPPSPVQFLPVINRQNILIGIVTLHGLVSA  334 (336)
Q Consensus       289 ~v~~~~~l~~~~~~~~~~~~~~~~l~Vv~~~~~~iGiit~~di~~~  334 (336)
                      .+.+++++.++++.|.++  +.+.+||+|++|+++|+||..||+++
T Consensus        74 ~v~~~~~l~~~~~~~~~~--~~~~l~Vvd~~g~~~Givt~~dl~~~  117 (122)
T 3kpb_A           74 TAHEDEPVDHVAIKMSKY--NISGVPVVDDYRRVVGIVTSEDISRL  117 (122)
T ss_dssp             CEETTSBHHHHHHHHHHH--TCSEEEEECTTCBEEEEEEHHHHHHH
T ss_pred             EECCCCCHHHHHHHHHHh--CCCeEEEECCCCCEEEEEeHHHHHHH
Confidence            999999999999999998  89999999998999999999999874

>3fhm_A Uncharacterized protein ATU1752; CBS domain, prokaryotic, bound nucleotide, AMP, NADH, struct genomics, PSI-2; HET: AMP NAI; 2.70A {Agrobacterium tumefaciens str}

Probab=99.80  E-value=1.6e-19  Score=146.73  Aligned_cols=135  Identities=17%  Similarity=0.261  Sum_probs=115.5

Q ss_pred             cCCCCchhhhhhhhhhhccccC-CCCccccCCCcHHHHHHHHHhcCcceEEEEcCCCcEEEEeeHHHHHHHHHhcCCchh
Q 019775          197 NHPAGRIGKSLIFKVQDVMKPQ-KELPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRRTLKASGEGIF  275 (336)
Q Consensus       197 ~~~~~~~~~~~~~~v~~im~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~it~~dl~~~~~~~~~~~~  275 (336)
                      .++.........++|+++|.+. ..++++++++++.++++.|.+++++.+||+|++|+++|+|+.+||...+........
T Consensus        12 ~~~~~~~~~l~~~~v~dim~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~~~~~~   91 (165)
T 3fhm_A           12 SGRENLYFQGMATFVKDLLDRKGRDVVTVGPDVSIGEAAGTLHAHKIGAVVVTDADGVVLGIFTERDLVKAVAGQGAASL   91 (165)
T ss_dssp             ----CCCCSSSSCBHHHHHHHHCSCCCEECTTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHHHHGGGGG
T ss_pred             cccchhhHhhhhcCHHHHhccCCCCCeEECCCCCHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHHHHHhcCCccc
Confidence            3445555556678999999973 225699999999999999999999999999988999999999999988776432334


Q ss_pred             hhhHhhhcCCCCeeeCCCccHHHHHHHhcCCCCCccEeEEEeCCCcEEEEEehhhHhhc
Q 019775          276 KLTVGEMCNRSPRTIGPDAMAVEAMQKMESPPSPVQFLPVINRQNILIGIVTLHGLVSA  334 (336)
Q Consensus       276 ~~~i~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~l~Vv~~~~~~iGiit~~di~~~  334 (336)
                      ..++.++|.+++.++.+++++.++++.|.++  +...+||+|+ |+++|+||..||+++
T Consensus        92 ~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~--~~~~lpVvd~-g~~~Giit~~dil~~  147 (165)
T 3fhm_A           92 QQSVSVAMTKNVVRCQHNSTTDQLMEIMTGG--RFRHVPVEEN-GRLAGIISIGDVVKA  147 (165)
T ss_dssp             TSBGGGTSBSSCCCBCTTCBHHHHHHHHHHH--TCSEEEEEET-TEEEEEEEHHHHHHH
T ss_pred             cCCHHHHhcCCCeEECCCCcHHHHHHHHHHc--CCCEEEEEEC-CEEEEEEEHHHHHHH
Confidence            6789999999999999999999999999999  8999999999 999999999999875

>3jtf_A Magnesium and cobalt efflux protein; CBS domain, CORC, AMP, structural genomics, PSI-2, protein S initiative; HET: MSE AMP; 2.00A {Bordetella parapertussis}

Probab=99.80  E-value=1.3e-19  Score=141.02  Aligned_cols=119  Identities=15%  Similarity=0.219  Sum_probs=104.8

Q ss_pred             hhhhhhccccCCCCccccCCCcHHHHHHHHHhcCcceEEEEcCC-CcEEEEeeHHHHHHHHHhcCCchhhhhHhhhcCCC
Q 019775          208 IFKVQDVMKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEE-YHLIGTFTDGDLRRTLKASGEGIFKLTVGEMCNRS  286 (336)
Q Consensus       208 ~~~v~~im~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~-~~~~G~it~~dl~~~~~~~~~~~~~~~i~~~~~~~  286 (336)
                      .++|+++|.|...+++++++.++.++++.|.+++++++||+|++ |+++|+||.+||+..+..     ...++.++|.+ 
T Consensus         4 ~~~v~diM~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~~~~~~Givt~~dl~~~~~~-----~~~~v~~~m~~-   77 (129)
T 3jtf_A            4 ERTVADIMVPRSRMDLLDISQPLPQLLATIIETAHSRFPVYEDDRDNIIGILLAKDLLRYMLE-----PALDIRSLVRP-   77 (129)
T ss_dssp             CCBHHHHCEEGGGCCCEETTSCHHHHHHHHHHSCCSEEEEESSSTTCEEEEEEGGGGGGGGTC-----TTSCGGGGCBC-
T ss_pred             CCCHHHhCccHHHeEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCCcEEEEEEHHHHHhHhcc-----CCcCHHHHhCC-
Confidence            35799999975557799999999999999999999999999975 899999999999876542     24678889865 


Q ss_pred             CeeeCCCccHHHHHHHhcCCCCCccEeEEEeCCCcEEEEEehhhHhhc
Q 019775          287 PRTIGPDAMAVEAMQKMESPPSPVQFLPVINRQNILIGIVTLHGLVSA  334 (336)
Q Consensus       287 ~~~v~~~~~l~~~~~~~~~~~~~~~~l~Vv~~~~~~iGiit~~di~~~  334 (336)
                      +.++.+++++.++++.|.++  +.+.+||+|++|+++|+||+.|++++
T Consensus        78 ~~~v~~~~~l~~~~~~m~~~--~~~~~pVvd~~g~~~Giit~~Dil~~  123 (129)
T 3jtf_A           78 AVFIPEVKRLNVLLREFRAS--RNHLAIVIDEHGGISGLVTMEDVLEQ  123 (129)
T ss_dssp             CCEEETTCBHHHHHHHHHTS--SCCEEEEECC-CCEEEEEEHHHHHHH
T ss_pred             CeEeCCCCcHHHHHHHHHhc--CCeEEEEEeCCCCEEEEEEHHHHHHH
Confidence            77999999999999999999  99999999998999999999999874

>3lfr_A Putative metal ION transporter; CBS, AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 1.53A {Pseudomonas syringae}

Probab=99.79  E-value=1.2e-19  Score=142.66  Aligned_cols=121  Identities=15%  Similarity=0.173  Sum_probs=107.2

Q ss_pred             hhhhhccccCCCCccccCCCcHHHHHHHHHhcCcceEEEEcCC-CcEEEEeeHHHHHHHHHhcCCchhhhhHhhhcCCCC
Q 019775          209 FKVQDVMKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEE-YHLIGTFTDGDLRRTLKASGEGIFKLTVGEMCNRSP  287 (336)
Q Consensus       209 ~~v~~im~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~-~~~~G~it~~dl~~~~~~~~~~~~~~~i~~~~~~~~  287 (336)
                      ++|+++|.+...+++++++.++.++++.|.+++++.+||++++ |+++|+||.+||+..+....  ....++.++|.+ +
T Consensus         3 ~~v~~iM~~~~~~~~v~~~~~v~~a~~~m~~~~~~~~pVvd~~~~~~vGivt~~dl~~~~~~~~--~~~~~v~~~m~~-~   79 (136)
T 3lfr_A            3 LQVRDIMVPRSQMISIKATQTPREFLPAVIDAAHSRYPVIGESHDDVLGVLLAKDLLPLILKAD--GDSDDVKKLLRP-A   79 (136)
T ss_dssp             CBHHHHSEEGGGCCCEETTCCHHHHHHHHHHHCCSEEEEESSSTTCEEEEEEGGGGGGGGGSSS--GGGCCGGGTCBC-C
T ss_pred             CChHhccccHHHEEEEcCCCCHHHHHHHHHhCCCCEEEEEcCCCCcEEEEEEHHHHHHHHHhcc--CCCcCHHHHcCC-C
Confidence            5789999975557799999999999999999999999999987 79999999999998765211  235689999976 8


Q ss_pred             eeeCCCccHHHHHHHhcCCCCCccEeEEEeCCCcEEEEEehhhHhhc
Q 019775          288 RTIGPDAMAVEAMQKMESPPSPVQFLPVINRQNILIGIVTLHGLVSA  334 (336)
Q Consensus       288 ~~v~~~~~l~~~~~~~~~~~~~~~~l~Vv~~~~~~iGiit~~di~~~  334 (336)
                      .++.+++++.++++.|.++  +.+.+||+|++|+++|+||+.||+++
T Consensus        80 ~~v~~~~~l~~~~~~m~~~--~~~~~~Vvd~~g~lvGiit~~Dil~~  124 (136)
T 3lfr_A           80 TFVPESKRLNVLLREFRAN--HNHMAIVIDEYGGVAGLVTIEDVLEQ  124 (136)
T ss_dssp             CEEETTCBHHHHHHHHHHH--TCCEEEEECTTSCEEEEEEHHHHHTT
T ss_pred             eEECCCCcHHHHHHHHHhc--CCeEEEEEeCCCCEEEEEEHHHHHHH
Confidence            8999999999999999999  89999999998999999999999875

>3lhh_A CBS domain protein; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG, cell membrane; HET: MSE AMP; 2.10A {Shewanella oneidensis}

Probab=99.79  E-value=2.9e-19  Score=146.29  Aligned_cols=121  Identities=14%  Similarity=0.193  Sum_probs=107.7

Q ss_pred             hhhhhhhccccCCCCccccCCCcHHHHHHHHHhcCcceEEEEcCC-CcEEEEeeHHHHHHHHHhcCCchhhhhHhhhcCC
Q 019775          207 LIFKVQDVMKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEE-YHLIGTFTDGDLRRTLKASGEGIFKLTVGEMCNR  285 (336)
Q Consensus       207 ~~~~v~~im~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~-~~~~G~it~~dl~~~~~~~~~~~~~~~i~~~~~~  285 (336)
                      ..++|+++|.|...++++++++++.++++.|.+++++.+||+|++ ++++|+||.+||+.......    ..++.++| +
T Consensus        40 ~~~~v~diM~~~~~~~~v~~~~~v~~a~~~m~~~~~~~~pVvd~~~~~lvGivt~~dl~~~~~~~~----~~~v~~im-~  114 (172)
T 3lhh_A           40 DERTISSLMVPRSDIVFLDLNLPLDANLRTVMQSPHSRFPVCRNNVDDMVGIISAKQLLSESIAGE----RLELVDLV-K  114 (172)
T ss_dssp             ---CTTTTSEEGGGCCCEETTSCHHHHHHHHHTCCCSEEEEESSSTTSEEEEEEHHHHHHHHHTTC----CCCGGGGC-B
T ss_pred             CCCCHHHhCccHHHeEEEcCCCCHHHHHHHHHhCCCCEEEEEeCCCCeEEEEEEHHHHHHHHhhcC----cccHHHHh-c
Confidence            356899999965457799999999999999999999999999987 89999999999999876532    56799999 8


Q ss_pred             CCeeeCCCccHHHHHHHhcCCCCCccEeEEEeCCCcEEEEEehhhHhhc
Q 019775          286 SPRTIGPDAMAVEAMQKMESPPSPVQFLPVINRQNILIGIVTLHGLVSA  334 (336)
Q Consensus       286 ~~~~v~~~~~l~~~~~~~~~~~~~~~~l~Vv~~~~~~iGiit~~di~~~  334 (336)
                      ++.++.+++++.++++.|.++  +...+||+|++|+++|+||+.||+++
T Consensus       115 ~~~~v~~~~~l~~a~~~m~~~--~~~~~pVvd~~g~lvGiit~~Dil~~  161 (172)
T 3lhh_A          115 NCNFVPNSLSGMELLEHFRTT--GSQMVFVVDEYGDLKGLVTLQDMMDA  161 (172)
T ss_dssp             CCEEEETTCCHHHHHHHHHHH--TCSEEEEECTTSCEEEEEEHHHHHHH
T ss_pred             CCeEeCCCCCHHHHHHHHHHc--CCeEEEEEeCCCCEEEEeeHHHHHHH
Confidence            889999999999999999999  89999999998999999999999874

>2e5f_A Hypothetical protein PH0510; structural genomics, sugar binding protein, NPPSFA, national on protein structural and functional analyses; 1.35A {Pyrococcus horikoshii} PDB: 2dec_A* 2df8_A 2cb0_A*

Probab=99.79  E-value=3.3e-19  Score=160.52  Aligned_cols=148  Identities=16%  Similarity=0.137  Sum_probs=122.6

Q ss_pred             HHHHHHHHHHHHHhcCChhHHHHHHHHHHcCCCeEEEEeccchHHHHHHHHHHHHh-cCCeeeecCCccccccccCCCCC
Q 019775           23 LFKSQQDHLNYFFQHLSLPHTLTFTQTLLKCRGTIFFTGVGKSGFVANKISQTLIS-LGIKSGFLNPLDALHGDIGILSS  101 (336)
Q Consensus        23 ~~~~~~~~l~~~~~~~~~~~i~~~~~~i~~a~~~I~i~G~G~s~~~a~~~~~~l~~-~g~~~~~~~~~~~~~~~~~~~~~  101 (336)
                      .+.++.+.+++ ...    .++++++.+.++ ++|+++|+|+|+.+|.++++.|.+ .|+++. ..+.+. ......+++
T Consensus         6 eI~eqP~~~~~-~~~----~~~~~~~~l~~~-~~I~i~G~G~S~~~a~~~~~~l~~~~g~~v~-~~~se~-~~~~~~~~~   77 (325)
T 2e5f_A            6 EIKQTPDGIIK-ADK----VFNKVKDKISLP-NRILYLGCGSSHFLSKLLAMVTNMHGGLGIA-LPCSEF-LYSKETYPI   77 (325)
T ss_dssp             HHTTHHHHHHH-HHH----HHHHHTTTCCCC-SEEEEEESTHHHHHHHHHHHHHHHTTSEEEE-EEHHHH-HHHGGGSCC
T ss_pred             HHHHHHHHHHH-cCc----cHHHHHHHHhCC-CEEEEEEChHHHHHHHHHHHHHHHHhCCCEE-EechHH-hhcCcccCC
Confidence            34444555555 221    277777788888 699999999999999999999999 799988 544443 333345889


Q ss_pred             C--cEEEEEeCCCCcHHHHHHHHHHHHcCCeEEEEeCCCCCccccccCEEEEcCCCcccCCCCCCChhHHHHHHHHHHHH
Q 019775          102 D--DILVMFSKSGNTEELLKVVPCAKAKGAYLVSVTSVEGNALAAVCDMNVHLPVERELCPFDLAPVTSTAIQMVFGDTV  179 (336)
Q Consensus       102 ~--dlvi~iS~sG~~~~~~~~~~~ak~~g~~vi~IT~~~~s~l~~~ad~~i~~~~~~~~~~~~~~~~~s~~~~~~l~d~l  179 (336)
                      +  |++|+||+||+|++++++++.||   +++|+||++ +||+++.||++|.++. .+   .....++|.+++++++++|
T Consensus        78 ~~~dlvI~iS~SG~T~e~l~a~~~ak---a~viaIT~~-~S~La~~ad~~l~~~~-~e---~~~a~t~s~~~~l~~l~~L  149 (325)
T 2e5f_A           78 GEVELAVGISRSGETTEILLALEKIN---VKKLGITTR-ESSLTRMCDYSLVVPA-IE---ESVVMTHSFTSFYFAYLQL  149 (325)
T ss_dssp             CSCSEEEEECSSSCCHHHHHHHHTCC---SCEEEEESS-SCHHHHHSSEEEECCC-CC---CSSSCCHHHHHHHHHHHHH
T ss_pred             CCCeEEEEEeCCCCCHHHHHHHHHhC---CCEEEEECC-CCHHHHhcCEEEecCC-cc---ceecccHHHHHHHHHHHHH
Confidence            9  99999999999999999999999   999999999 9999999999999988 44   3557899999999999999


Q ss_pred             HHHHHhh
Q 019775          180 AIAMMGA  186 (336)
Q Consensus       180 ~~~~~~~  186 (336)
                      +..+...
T Consensus       150 ~~~~~~~  156 (325)
T 2e5f_A          150 LRYSYGL  156 (325)
T ss_dssp             HHHHTTC
T ss_pred             HHHHHHH
Confidence            9988665

>3lqn_A CBS domain protein; csgid, structural genomics, unknown function, center for structural genomics of infectious diseases; 1.80A {Bacillus anthracis} SCOP: d.37.1.0

Probab=99.79  E-value=5.9e-19  Score=140.92  Aligned_cols=125  Identities=15%  Similarity=0.239  Sum_probs=108.7

Q ss_pred             hhhhhhhhccccCCCCccccCCCcHHHHHHHHHhcCcceEEEEcCCCcEEEEeeHHHHHHHHHhcCC----chhhhhHhh
Q 019775          206 SLIFKVQDVMKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRRTLKASGE----GIFKLTVGE  281 (336)
Q Consensus       206 ~~~~~v~~im~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~it~~dl~~~~~~~~~----~~~~~~i~~  281 (336)
                      -..++|+++|.+...++++++++++.++++.|.+++++.+||+|++|+++|+||.+||...+.....    .....++.+
T Consensus        12 l~~~~v~~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~v~~   91 (150)
T 3lqn_A           12 FQQIFVKDLMISSEKVAHVQIGNGLEHALLVLVKSGYSAIPVLDPMYKLHGLISTAMILDGILGLERIEFERLEEMKVEQ   91 (150)
T ss_dssp             HHHCBHHHHSEEGGGSCCBCTTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHHHHTBCSSSBCGGGGGGCBGGG
T ss_pred             hhcCChhhcccCCCceEEECCCCcHHHHHHHHHHcCCcEEEEECCCCCEEEEEEHHHHHHHHHhhcccchhHHhcCCHHH
Confidence            3567999999975346799999999999999999999999999989999999999999988753211    123578999


Q ss_pred             hcCCCCeeeCCCccHHHHHHHhcCCCCCccEeEEEeCCCcEEEEEehhhHhhc
Q 019775          282 MCNRSPRTIGPDAMAVEAMQKMESPPSPVQFLPVINRQNILIGIVTLHGLVSA  334 (336)
Q Consensus       282 ~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~l~Vv~~~~~~iGiit~~di~~~  334 (336)
                      +|.+++.++.+++++.++++.|.++  +.  +||+|++|+++|+||+.||+++
T Consensus        92 ~m~~~~~~v~~~~~l~~a~~~~~~~--~~--l~Vvd~~g~~~Giit~~dil~~  140 (150)
T 3lqn_A           92 VMKQDIPVLKLEDSFAKALEMTIDH--PF--ICAVNEDGYFEGILTRRAILKL  140 (150)
T ss_dssp             TCBSSCCEEETTCBHHHHHHHHHHC--SE--EEEECTTCBEEEEEEHHHHHHH
T ss_pred             HhcCCCceeCCCCCHHHHHHHHHhC--CE--EEEECCCCcEEEEEEHHHHHHH
Confidence            9999999999999999999999988  65  9999988999999999999874

>1pbj_A Hypothetical protein; structural genomics, domain, PSI, protein structure initiative; 1.40A {Methanothermobacter thermautotrophicusdelta H} SCOP: d.37.1.1

Probab=99.78  E-value=1.4e-18  Score=134.09  Aligned_cols=119  Identities=24%  Similarity=0.303  Sum_probs=106.2

Q ss_pred             hhhhhccccCCCCccccCCCcHHHHHHHHHhcCcceEEEEcCCCcEEEEeeHHHHHHHHHhcCCchhhhhHhhhcCCCCe
Q 019775          209 FKVQDVMKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRRTLKASGEGIFKLTVGEMCNRSPR  288 (336)
Q Consensus       209 ~~v~~im~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~it~~dl~~~~~~~~~~~~~~~i~~~~~~~~~  288 (336)
                      |+|+++|.++  +++++++.++.++++.|.+++.+.+||+| +|+++|+++.+|+...+... ......++.++|.+++.
T Consensus         1 m~v~~~m~~~--~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd-~~~~~G~it~~dl~~~~~~~-~~~~~~~v~~~m~~~~~   76 (125)
T 1pbj_A            1 MRVEDVMVTD--VDTIDITASLEDVLRNYVENAKGSSVVVK-EGVRVGIVTTWDVLEAIAEG-DDLAEVKVWEVMERDLV   76 (125)
T ss_dssp             -CHHHHCBCS--CCEEETTCBHHHHHHHHHHHCCCEEEEEE-TTEEEEEEEHHHHHHHHHHT-CCTTTSBHHHHCBCGGG
T ss_pred             CCHHHhcCCC--ceEECCCCcHHHHHHHHHHcCCCEEEEEe-CCeeEEEEeHHHHHHHHhcC-CcccccCHHHHcCCCCe
Confidence            5789999986  56999999999999999999999999999 89999999999999876542 22235789999999999


Q ss_pred             eeCCCccHHHHHHHhcCCCCCccEeEEEeCCCcEEEEEehhhHhhc
Q 019775          289 TIGPDAMAVEAMQKMESPPSPVQFLPVINRQNILIGIVTLHGLVSA  334 (336)
Q Consensus       289 ~v~~~~~l~~~~~~~~~~~~~~~~l~Vv~~~~~~iGiit~~di~~~  334 (336)
                      ++.+++++.++++.|.++  +.+.+||+|+ |+++|+||+.|++++
T Consensus        77 ~v~~~~~l~~~~~~~~~~--~~~~l~Vvd~-~~~~Gvit~~dl~~~  119 (125)
T 1pbj_A           77 TISPRATIKEAAEKMVKN--VVWRLLVEED-DEIIGVISATDILRA  119 (125)
T ss_dssp             EECTTSCHHHHHHHHHHH--TCSEEEEEET-TEEEEEEEHHHHHHH
T ss_pred             EECCCCCHHHHHHHHHhc--CCcEEEEEEC-CEEEEEEEHHHHHHH
Confidence            999999999999999999  8999999999 999999999999874

>3oco_A Hemolysin-like protein containing CBS domains; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.20A {Oenococcus oeni}

Probab=99.78  E-value=6e-19  Score=141.47  Aligned_cols=120  Identities=19%  Similarity=0.223  Sum_probs=107.3

Q ss_pred             hhhhhhccccCCCCccccCCCcHHHHHHHHHhcCcceEEEE-cC-CCcEEEEeeHHHHHHHHHhcCCchhhhhHhhhcCC
Q 019775          208 IFKVQDVMKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVI-DE-EYHLIGTFTDGDLRRTLKASGEGIFKLTVGEMCNR  285 (336)
Q Consensus       208 ~~~v~~im~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ipVv-d~-~~~~~G~it~~dl~~~~~~~~~~~~~~~i~~~~~~  285 (336)
                      .++|+++|.+...+++++++.++.++++.|.+++++.+||+ ++ +|+++|+||.+||+..+....    ..++.++| +
T Consensus        19 ~~~v~~iM~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVv~d~~~~~lvGivt~~dl~~~~~~~~----~~~v~~~m-~   93 (153)
T 3oco_A           19 DKVASDVMVDRTSMSVVDVDETIADALLLYLEEQYSRFPVTADNDKDKIIGYAYNYDIVRQARIDD----KAKISTIM-R   93 (153)
T ss_dssp             HCBHHHHSEEGGGCCCEETTSBHHHHHHHHHHHCCSEEEEEETTEEEEEEEEEEHHHHHHHHHHHT----TSBGGGTC-B
T ss_pred             CCEeeeEecchhheEEEcCCCCHHHHHHHHHhCCCCEEEEEECCCCCcEEEEEEHHHHHhHHhcCC----CCcHHHHh-C
Confidence            56899999973336699999999999999999999999999 64 489999999999998876532    56899999 8


Q ss_pred             CCeeeCCCccHHHHHHHhcCCCCCccEeEEEeCCCcEEEEEehhhHhhc
Q 019775          286 SPRTIGPDAMAVEAMQKMESPPSPVQFLPVINRQNILIGIVTLHGLVSA  334 (336)
Q Consensus       286 ~~~~v~~~~~l~~~~~~~~~~~~~~~~l~Vv~~~~~~iGiit~~di~~~  334 (336)
                      ++.++.+++++.++++.|.++  +...+||+|++|+++|+||+.||+++
T Consensus        94 ~~~~v~~~~~l~~~~~~m~~~--~~~~lpVvd~~g~~vGivt~~dil~~  140 (153)
T 3oco_A           94 DIVSVPENMKVPDVMEEMSAH--RVPMAIVIDEYGGTSGIITDKDVYEE  140 (153)
T ss_dssp             CCEEEETTSBHHHHHHHHHHT--TCSCEEEECTTSCEEEEECHHHHHHH
T ss_pred             CCeEECCCCCHHHHHHHHHHc--CCcEEEEEeCCCCEEEEeeHHHHHHH
Confidence            889999999999999999999  89999999998999999999999874

>2rih_A Conserved protein with 2 CBS domains; bateman domain, AMP binding protein, ligand-BIND protein; 2.10A {Pyrobaculum aerophilum} SCOP: d.37.1.1 PDB: 2rif_A

Probab=99.77  E-value=1.9e-18  Score=136.52  Aligned_cols=120  Identities=15%  Similarity=0.233  Sum_probs=107.3

Q ss_pred             hhhhhhccccCCCCccccCCCcHHHHHHHHHhcCcceEEEEcCCC--cEEEEeeHHHHHHHHHhcCCchhhhhHhhhcCC
Q 019775          208 IFKVQDVMKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEEY--HLIGTFTDGDLRRTLKASGEGIFKLTVGEMCNR  285 (336)
Q Consensus       208 ~~~v~~im~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~~--~~~G~it~~dl~~~~~~~~~~~~~~~i~~~~~~  285 (336)
                      .++|+++|.+.  ++++++++++.++++.|.+++++.+||+|++|  +++|+|+.+||+..+....  ....++.++|.+
T Consensus         4 ~~~v~~im~~~--~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~~~Givt~~dl~~~~~~~~--~~~~~v~~~m~~   79 (141)
T 2rih_A            4 AIRTSELLKRP--PVSLPETATIREVATELAKNRVGLAVLTARDNPKRPVAVVSERDILRAVAQRL--DLDGPAMPIANS   79 (141)
T ss_dssp             -CBGGGGCCSC--CEEEETTCBHHHHHHHHHHHTCSEEEEEETTEEEEEEEEEEHHHHHHHHHTTC--CTTSBSGGGCBC
T ss_pred             ceEHHHHhcCC--CeEeCCCCcHHHHHHHHHHcCCCEEEEEcCCCcceeEEEEEHHHHHHHHhcCC--CCCCCHHHHcCC
Confidence            46899999986  56899999999999999999999999999888  9999999999998775421  125789999999


Q ss_pred             CCeeeCCCccHHHHHHHhcCCCCCccEeEEEeCCCcEEEEEehhhHhhc
Q 019775          286 SPRTIGPDAMAVEAMQKMESPPSPVQFLPVINRQNILIGIVTLHGLVSA  334 (336)
Q Consensus       286 ~~~~v~~~~~l~~~~~~~~~~~~~~~~l~Vv~~~~~~iGiit~~di~~~  334 (336)
                      ++.++.++ ++.++++.|.++  +.+.+||+|++|+++|+||+.||+++
T Consensus        80 ~~~~v~~~-~l~~a~~~m~~~--~~~~l~Vvd~~g~~~Giit~~dll~~  125 (141)
T 2rih_A           80 PITVLDTD-PVHVAAEKMRRH--NIRHVVVVNKNGELVGVLSIRDLCFE  125 (141)
T ss_dssp             CCEEETTS-BHHHHHHHHHHH--TCSEEEEECTTSCEEEEEEHHHHHSC
T ss_pred             CCeEEcCC-CHHHHHHHHHHc--CCeEEEEEcCCCcEEEEEEHHHHHHH
Confidence            99999999 999999999999  89999999988999999999999864

>3gby_A Uncharacterized protein CT1051; CBS domain, structural genomics, PSI-2, protein structure initiative; HET: EPE; 1.66A {Chlorobium tepidum tls}

Probab=99.77  E-value=5.3e-19  Score=137.34  Aligned_cols=120  Identities=18%  Similarity=0.281  Sum_probs=107.0

Q ss_pred             hhhhhhccccCCCCccccCCCcHHHHHHHHHhcCcceEEEEcCCCcEEEEeeHHHHHHHHHhcCCchhhhhHhhhcCCCC
Q 019775          208 IFKVQDVMKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRRTLKASGEGIFKLTVGEMCNRSP  287 (336)
Q Consensus       208 ~~~v~~im~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~it~~dl~~~~~~~~~~~~~~~i~~~~~~~~  287 (336)
                      .++++++|.++  ++++++++++.++++.|.+++++.+||+|+ |+++|+|+.+||...+.....  ...++.++|.+++
T Consensus         4 s~~v~~~m~~~--~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~-~~~~Givt~~dl~~~~~~~~~--~~~~v~~~m~~~~   78 (128)
T 3gby_A            4 SVTFSYLAETD--YPVFTLGGSTADAARRLAASGCACAPVLDG-ERYLGMVHLSRLLEGRKGWPT--VKEKLGEELLETV   78 (128)
T ss_dssp             TCBGGGGCBCC--SCCEETTSBHHHHHHHHHHHTCSEEEEEET-TEEEEEEEHHHHHTTCSSSCC--TTCBCCGGGCBCC
T ss_pred             ceEHHHhhcCC--cceECCCCCHHHHHHHHHHCCCcEEEEEEC-CEEEEEEEHHHHHHHHhhCCc--ccCcHHHHccCCC
Confidence            46899999998  559999999999999999999999999998 999999999999976543221  1367899999999


Q ss_pred             eeeCCCccHHHHHHHhcCCCCCccEeEEEeCCCcEEEEEehhhHhhc
Q 019775          288 RTIGPDAMAVEAMQKMESPPSPVQFLPVINRQNILIGIVTLHGLVSA  334 (336)
Q Consensus       288 ~~v~~~~~l~~~~~~~~~~~~~~~~l~Vv~~~~~~iGiit~~di~~~  334 (336)
                      .++.+++++.++++.|.++  +...+||+|++|+++|+||+.|++++
T Consensus        79 ~~v~~~~~l~~~~~~~~~~--~~~~lpVvd~~g~~~Giit~~dll~~  123 (128)
T 3gby_A           79 RSYRPGEQLFDNLISVAAA--KCSVVPLADEDGRYEGVVSRKRILGF  123 (128)
T ss_dssp             CCBCTTSBGGGSHHHHHHC--SSSEEEEECTTCBEEEEEEHHHHHHH
T ss_pred             cEECCCCCHHHHHHHHHhC--CCcEEEEECCCCCEEEEEEHHHHHHH
Confidence            9999999999999999999  89999999988999999999999874

>3odp_A Putative tagatose-6-phosphate ketose/aldose isome; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE PG4; 2.35A {Clostridium novyi}

Probab=99.77  E-value=4.6e-18  Score=156.14  Aligned_cols=162  Identities=18%  Similarity=0.148  Sum_probs=125.9

Q ss_pred             hHHHHHHHHHHHHHHHHHHhcCCh--hHHHHHHHHHHcC-CCeEEEEeccchHHHHHHHHHHHHhc-CCeeeecCCcccc
Q 019775           17 ENTLLDLFKSQQDHLNYFFQHLSL--PHTLTFTQTLLKC-RGTIFFTGVGKSGFVANKISQTLISL-GIKSGFLNPLDAL   92 (336)
Q Consensus        17 ~~~~~~~~~~~~~~l~~~~~~~~~--~~i~~~~~~i~~a-~~~I~i~G~G~s~~~a~~~~~~l~~~-g~~~~~~~~~~~~   92 (336)
                      ...+.+-+.++.+.++++++....  ..++++++.+.+. .+||+++|+|+|+.+|..++++|.++ |.++..+++....
T Consensus        18 ~~~m~kEI~eQP~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~I~i~G~GtS~~aa~~~~~~l~~~~g~~v~ai~~~~~~   97 (393)
T 3odp_A           18 GYITAKEICNQPKLWRETYEIILSQREKLKSFLDNFAKKPNAKIVITGAGSSAFVGNSVVSYLNAKENIKIEAIATTDIV   97 (393)
T ss_dssp             CHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCEEEEECSTHHHHHHHTTHHHHHHHSSSEEEECCHHHHT
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHhCCCCEEEEEEechHHHHHHHHHHHHHHHhCCCeEEeCcHHHH
Confidence            456666777888888888876432  3466666666532 26999999999999999999999985 8898877654443


Q ss_pred             ccccC--CCCCCcEEEEEeCCCCcHHHHHHHHHHHHc--CCeEEEEeCCCCCccccccC-----EEEEcCCCcccCCCCC
Q 019775           93 HGDIG--ILSSDDILVMFSKSGNTEELLKVVPCAKAK--GAYLVSVTSVEGNALAAVCD-----MNVHLPVERELCPFDL  163 (336)
Q Consensus        93 ~~~~~--~~~~~dlvi~iS~sG~~~~~~~~~~~ak~~--g~~vi~IT~~~~s~l~~~ad-----~~i~~~~~~~~~~~~~  163 (336)
                      .....  ..+++|++|+||+||+|++++++++.||++  |+++|+||++.+|+|++.||     +++.++.+..  +...
T Consensus        98 ~~~~~~~~~~~~dlvI~iS~SGeT~e~l~al~~ak~~~~Ga~~iaIT~~~~S~La~~aD~~~~~~~i~~~~~~~--E~~v  175 (393)
T 3odp_A           98 SHPFYYLKKDEPTLLISCARSGNSPESTAAVTLAEKIVDDISHLIITCNSEGKLALHAKRNYNSFLLLMPEESN--DKGF  175 (393)
T ss_dssp             TCGGGTCCTTSCEEEEEEESSSCCHHHHHHHHHHHHHCSSEEEEEEESCTTSHHHHGGGSSSCEEEEECCGGGS--CCSS
T ss_pred             hhhHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHhhcCCCcEEEEECCCCCHHHHHhcCCCceEEEEcCCccc--cccc
Confidence            32221  227999999999999999999999999999  99999999999999999999     5888877522  2445


Q ss_pred             CChhHHHHHHHHHHHHH
Q 019775          164 APVTSTAIQMVFGDTVA  180 (336)
Q Consensus       164 ~~~~s~~~~~~l~d~l~  180 (336)
                      ..+.|.++++..+-+|+
T Consensus       176 a~Tksft~ql~~l~ll~  192 (393)
T 3odp_A          176 AMTGSFSTMLLSCLLIF  192 (393)
T ss_dssp             SCSHHHHHHHHHHHHTT
T ss_pred             cccHHHHHHHHHHHHHH
Confidence            77888888877655543

>2rc3_A CBS domain; in SITU proteolysis, BR, structural genomics, PSI-2, protein structure initiative; HET: NAD; 1.60A {Nitrosomonas europaea atcc 19718} SCOP: d.37.1.1

Probab=99.77  E-value=2.5e-18  Score=134.71  Aligned_cols=121  Identities=19%  Similarity=0.373  Sum_probs=106.1

Q ss_pred             hhhhccccC-CCCccccCCCcHHHHHHHHHhcCcceEEEEcCCCcEEEEeeHHHHHHHHHhcCCchhhhhHhhhcCCCCe
Q 019775          210 KVQDVMKPQ-KELPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRRTLKASGEGIFKLTVGEMCNRSPR  288 (336)
Q Consensus       210 ~v~~im~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~it~~dl~~~~~~~~~~~~~~~i~~~~~~~~~  288 (336)
                      +|+++|.|. ..++++++++++.++++.|.+++++.+||+| +|+++|+|+.+||+..+...+......++.++|.+++.
T Consensus         7 ~v~~im~~~~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd-~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~~m~~~~~   85 (135)
T 2rc3_A            7 TVKHLLQEKGHTVVAIGPDDSVFNAMQKMAADNIGALLVMK-DEKLVGILTERDFSRKSYLLDKPVKDTQVKEIMTRQVA   85 (135)
T ss_dssp             BHHHHHHHHCCCCCEECTTSBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHHGGGSSSCGGGSBGGGTSBCSCC
T ss_pred             eHHHHHhcCCCCcEEECCCCcHHHHHHHHHhcCCCEEEEEE-CCEEEEEEehHHHHHHHHHcCCCcccCCHHHhccCCCe
Confidence            889999831 2266999999999999999999999999998 89999999999999755543333346789999999999


Q ss_pred             eeCCCccHHHHHHHhcCCCCCccEeEEEeCCCcEEEEEehhhHhhc
Q 019775          289 TIGPDAMAVEAMQKMESPPSPVQFLPVINRQNILIGIVTLHGLVSA  334 (336)
Q Consensus       289 ~v~~~~~l~~~~~~~~~~~~~~~~l~Vv~~~~~~iGiit~~di~~~  334 (336)
                      ++.+++++.++++.|.++  +.+.+||+| +|+++|+||..|++++
T Consensus        86 ~v~~~~~l~~~~~~m~~~--~~~~lpVvd-~g~~~Giit~~dll~~  128 (135)
T 2rc3_A           86 YVDLNNTNEDCMALITEM--RVRHLPVLD-DGKVIGLLSIGDLVKD  128 (135)
T ss_dssp             CBCTTCBHHHHHHHHHHH--TCSEEEEEE-TTEEEEEEEHHHHHHH
T ss_pred             EECCCCcHHHHHHHHHHh--CCCEEEEEe-CCEEEEEEEHHHHHHH
Confidence            999999999999999999  899999999 5999999999999864

>4gqw_A CBS domain-containing protein CBSX1, chloroplasti; thioredoxin, plant, protein binding; 2.20A {Arabidopsis thaliana}

Probab=99.76  E-value=1.1e-18  Score=139.36  Aligned_cols=125  Identities=23%  Similarity=0.341  Sum_probs=106.5

Q ss_pred             hhhhhhccccCCCCccccCCCcHHHHHHHHHhcCcceEEEEcCCCcEEEEeeHHHHHHHHHhcC------------Cchh
Q 019775          208 IFKVQDVMKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRRTLKASG------------EGIF  275 (336)
Q Consensus       208 ~~~v~~im~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~it~~dl~~~~~~~~------------~~~~  275 (336)
                      .++|+++|.+...++++++++++.++++.|.+++++.+||+|++|+++|+|+.+||...+....            ....
T Consensus         4 ~~~v~~im~~~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~G~vt~~dl~~~~~~~~~~~~~~~~~~~~~~~~   83 (152)
T 4gqw_A            4 VYTVGEFMTKKEDLHVVKPTTTVDEALELLVENRITGFPVIDEDWKLVGLVSDYDLLALDSGDSTWKTFNAVQKLLSKTN   83 (152)
T ss_dssp             CSBGGGTSEESTTCCCBCTTSBHHHHHHHHHHTTCSEEEEECTTCBEEEEEEHHHHTTCC----CCHHHHHHHTC-----
T ss_pred             eEEhhhccCCCCCCeEECCCCcHHHHHHHHHHcCCceEEEEeCCCeEEEEEEHHHHHHhhcccCcccchHHHHHHHHHhc
Confidence            3689999999544679999999999999999999999999998899999999999985322110            1112


Q ss_pred             hhhHhhhcCCCCeeeCCCccHHHHHHHhcCCCCCccEeEEEeCCCcEEEEEehhhHhhc
Q 019775          276 KLTVGEMCNRSPRTIGPDAMAVEAMQKMESPPSPVQFLPVINRQNILIGIVTLHGLVSA  334 (336)
Q Consensus       276 ~~~i~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~l~Vv~~~~~~iGiit~~di~~~  334 (336)
                      ..++.++|.+++.++.+++++.++++.|.++  +...+||+|++|+++|+||+.||+++
T Consensus        84 ~~~v~~~m~~~~~~v~~~~~l~~a~~~~~~~--~~~~l~Vvd~~g~~~Giit~~dil~~  140 (152)
T 4gqw_A           84 GKLVGDLMTPAPLVVEEKTNLEDAAKILLET--KYRRLPVVDSDGKLVGIITRGNVVRA  140 (152)
T ss_dssp             CCBHHHHSEESCCCEESSSBHHHHHHHHHHS--SCCEEEEECTTSBEEEEEEHHHHHHH
T ss_pred             cccHHHhcCCCceEECCCCcHHHHHHHHHHC--CCCEEEEECCCCcEEEEEEHHHHHHH
Confidence            4689999999899999999999999999999  89999999988999999999999874

>2p9m_A Hypothetical protein MJ0922; structural genomics, collaboratory for structural genomics, secsg; 2.59A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID}

Probab=99.76  E-value=5.1e-18  Score=133.36  Aligned_cols=121  Identities=26%  Similarity=0.439  Sum_probs=106.4

Q ss_pred             hhhhhhccccCCCCccccCCCcHHHHHHHHHhcCcceEEEEcCCCcEEEEeeHHHH-HHHHHhcCCchhhhhHhhhcCCC
Q 019775          208 IFKVQDVMKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDL-RRTLKASGEGIFKLTVGEMCNRS  286 (336)
Q Consensus       208 ~~~v~~im~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~it~~dl-~~~~~~~~~~~~~~~i~~~~~~~  286 (336)
                      .++++++|.+.  +++++++.++.++++.|.+++.+.+||+|++|+++|+++.+|+ ...+....  ....++.++|.++
T Consensus         7 ~~~v~~im~~~--~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~~~--~~~~~v~~~m~~~   82 (138)
T 2p9m_A            7 NIKVKDVMTKN--VITAKRHEGVVEAFEKMLKYKISSLPVIDDENKVIGIVTTTDIGYNLIRDKY--TLETTIGDVMTKD   82 (138)
T ss_dssp             TCBGGGTSBCS--CCCEETTSBHHHHHHHHHHHTCCEEEEECTTCBEEEEEEHHHHHHHHTTTCC--CSSCBHHHHSCSS
T ss_pred             cCCHHHhhcCC--ceEECCCCcHHHHHHHHHHCCCcEEEEECCCCeEEEEEEHHHHHHHHHhhcc--cCCcCHHHHhCCC
Confidence            46889999876  5589999999999999999999999999988999999999999 77654321  1256899999999


Q ss_pred             CeeeCCCccHHHHHHHhcCCCCC-----ccEeEEEeCCCcEEEEEehhhHhhc
Q 019775          287 PRTIGPDAMAVEAMQKMESPPSP-----VQFLPVINRQNILIGIVTLHGLVSA  334 (336)
Q Consensus       287 ~~~v~~~~~l~~~~~~~~~~~~~-----~~~l~Vv~~~~~~iGiit~~di~~~  334 (336)
                      +.++.+++++.++++.|.++  +     .+.+||+|++|+++|+||..|+++.
T Consensus        83 ~~~v~~~~~l~~~~~~~~~~--~~~~~~~~~l~Vvd~~g~~~Giit~~dll~~  133 (138)
T 2p9m_A           83 VITIHEDASILEAIKKMDIS--GKKEEIINQLPVVDKNNKLVGIISDGDIIRT  133 (138)
T ss_dssp             CCCEETTSBHHHHHHHHTCC-------CCCEEEEECTTSBEEEEEEHHHHHHH
T ss_pred             cEEECCCCCHHHHHHHHHhc--CCccccccEEEEECCCCeEEEEEEHHHHHHH
Confidence            99999999999999999999  8     9999999988999999999999864

>1y5h_A Hypothetical protein RV2626C; CBS domain, unknown function; 1.50A {Mycobacterium tuberculosis} SCOP: d.37.1.1 PDB: 1xkf_A

Probab=99.76  E-value=1.6e-18  Score=135.48  Aligned_cols=121  Identities=25%  Similarity=0.335  Sum_probs=106.3

Q ss_pred             hhhhhhccccCCCCccccCCCcHHHHHHHHHhcCcceEEEEcCCCcEEEEeeHHHHHH-HHHhcCCchhhhhHhhhcCCC
Q 019775          208 IFKVQDVMKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRR-TLKASGEGIFKLTVGEMCNRS  286 (336)
Q Consensus       208 ~~~v~~im~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~it~~dl~~-~~~~~~~~~~~~~i~~~~~~~  286 (336)
                      .++++++|.+.  +++++++.++.++++.|.+++.+.+||+|++|+++|+|+.+|+.. .+.. +......++.++|.++
T Consensus         7 ~~~v~~im~~~--~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~-~~~~~~~~v~~~m~~~   83 (133)
T 1y5h_A            7 MTTARDIMNAG--VTCVGEHETLTAAAQYMREHDIGALPICGDDDRLHGMLTDRDIVIKGLAA-GLDPNTATAGELARDS   83 (133)
T ss_dssp             -CCHHHHSEET--CCCEETTSBHHHHHHHHHHHTCSEEEEECGGGBEEEEEEHHHHHHTTGGG-TCCTTTSBHHHHHTTC
T ss_pred             hcCHHHHhcCC--ceEeCCCCCHHHHHHHHHHhCCCeEEEECCCCeEEEEEeHHHHHHHHHhc-CCCccccCHHHHhcCC
Confidence            35899999986  558999999999999999999999999988899999999999984 4332 2222357899999999


Q ss_pred             CeeeCCCccHHHHHHHhcCCCCCccEeEEEeCCCcEEEEEehhhHhhc
Q 019775          287 PRTIGPDAMAVEAMQKMESPPSPVQFLPVINRQNILIGIVTLHGLVSA  334 (336)
Q Consensus       287 ~~~v~~~~~l~~~~~~~~~~~~~~~~l~Vv~~~~~~iGiit~~di~~~  334 (336)
                      +.++.+++++.++++.|.++  +.+.+||+|+ |+++|+||+.||+++
T Consensus        84 ~~~v~~~~~l~~~~~~m~~~--~~~~l~Vvd~-g~~~Giit~~dil~~  128 (133)
T 1y5h_A           84 IYYVDANASIQEMLNVMEEH--QVRRVPVISE-HRLVGIVTEADIARH  128 (133)
T ss_dssp             CCCEETTCCHHHHHHHHHHH--TCSEEEEEET-TEEEEEEEHHHHHHT
T ss_pred             CEEECCCCCHHHHHHHHHHc--CCCEEEEEEC-CEEEEEEEHHHHHHH
Confidence            99999999999999999999  8999999999 999999999999875

>3oi8_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADN; 1.99A {Neisseria meningitidis serogroup B}

Probab=99.76  E-value=7e-19  Score=141.58  Aligned_cols=119  Identities=16%  Similarity=0.208  Sum_probs=105.5

Q ss_pred             hhhhhhccccCCCCccccCCCcHHHHHHHHHhcCcceEEEEcCCC-cEEEEeeHHHHHHHHHhcCCchhhhhHhhhcCCC
Q 019775          208 IFKVQDVMKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEEY-HLIGTFTDGDLRRTLKASGEGIFKLTVGEMCNRS  286 (336)
Q Consensus       208 ~~~v~~im~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~~-~~~G~it~~dl~~~~~~~~~~~~~~~i~~~~~~~  286 (336)
                      .++|+++|.+...+++++++.++.++++.|.+++++.+||+|+++ +++|+||.+||+..+...    ...++.++|.+ 
T Consensus        37 ~~~v~diM~~~~~~~~v~~~~~i~~a~~~m~~~~~~~~pVvd~~~~~lvGivt~~dl~~~~~~~----~~~~v~~im~~-  111 (156)
T 3oi8_A           37 DLEVRDAMITRSRMNVLKENDSIERITAYVIDTAHSRFPVIGEDKDEVLGILHAKDLLKYMFNP----EQFHLKSILRP-  111 (156)
T ss_dssp             TCBGGGTCEEGGGCCCEETTCCHHHHHHHHHHHCCSEEEEESSSTTCEEEEEEGGGGGGGSSCG----GGCCHHHHCBC-
T ss_pred             CCCHhheeeeHHHeEEECCCCCHHHHHHHHHHCCCCEEEEEcCCCCcEEEEEEHHHHHHHHHcC----CcccHHHHcCC-
Confidence            568999999844467999999999999999999999999999774 999999999999765432    35789999976 


Q ss_pred             CeeeCCCccHHHHHHHhcCCCCCccEeEEEeCCCcEEEEEehhhHhh
Q 019775          287 PRTIGPDAMAVEAMQKMESPPSPVQFLPVINRQNILIGIVTLHGLVS  333 (336)
Q Consensus       287 ~~~v~~~~~l~~~~~~~~~~~~~~~~l~Vv~~~~~~iGiit~~di~~  333 (336)
                      +.++.+++++.++++.|.++  +...+||+|++|+++|+||+.||++
T Consensus       112 ~~~v~~~~~l~~a~~~m~~~--~~~~~~Vvd~~g~~~Givt~~Dile  156 (156)
T 3oi8_A          112 AVFVPEGKSLTALLKEFREQ--RNHMAIVIDEYGGTSGLVTFEDIIE  156 (156)
T ss_dssp             CCEEETTSBHHHHHHHHHHT--TCCEEEEECTTSSEEEEEEHHHHCC
T ss_pred             CEEECCCCCHHHHHHHHHhc--CCeEEEEECCCCCEEEEEEHHHhcC
Confidence            78999999999999999999  8999999999899999999999873

>3ocm_A Putative membrane protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADP; 1.80A {Bordetella parapertussis}

Probab=99.76  E-value=1.8e-18  Score=141.60  Aligned_cols=119  Identities=17%  Similarity=0.192  Sum_probs=104.5

Q ss_pred             hhhhhhccccCCCCccccCCCcHHHHHHHHHhcCcceEEEEcCC-CcEEEEeeHHHHHHHHHhcCCchhhhhHhhhcCCC
Q 019775          208 IFKVQDVMKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEE-YHLIGTFTDGDLRRTLKASGEGIFKLTVGEMCNRS  286 (336)
Q Consensus       208 ~~~v~~im~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~-~~~~G~it~~dl~~~~~~~~~~~~~~~i~~~~~~~  286 (336)
                      .++|+++|.|...+++++++.++.++++.|.+++++.+||++++ ++++|+|+.+||+..+....    ..++. ++ ++
T Consensus        35 ~~~v~diM~~~~~v~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~~~~lvGivt~~Dl~~~~~~~~----~~~v~-~~-~~  108 (173)
T 3ocm_A           35 ERSIRSIMTPRTDVSWVNIDDDAATIRQQLTAAPHSFFPVCRGSLDEVVGIGRAKDLVADLITEG----RVRRN-RL-RD  108 (173)
T ss_dssp             TSCSTTTSEEGGGCCCEETTSCHHHHHHHHHHSSCSEEEEESSSTTSEEEEEEHHHHHHHHHHHS----SCCGG-GS-BC
T ss_pred             CCCHHHhCCcHHHeEEEeCCCCHHHHHHHHHhCCCCEEEEEeCCCCCEEEEEEHHHHHHHHhcCC----cchhH-hc-CC
Confidence            46899999875457789999999999999999999999999976 89999999999998876432    34566 44 66


Q ss_pred             CeeeCCCccHHHHHHHhcCCCCCccEeEEEeCCCcEEEEEehhhHhhc
Q 019775          287 PRTIGPDAMAVEAMQKMESPPSPVQFLPVINRQNILIGIVTLHGLVSA  334 (336)
Q Consensus       287 ~~~v~~~~~l~~~~~~~~~~~~~~~~l~Vv~~~~~~iGiit~~di~~~  334 (336)
                      +.++.+++++.++++.|.++  +...+||+|++|+++|+||+.||+++
T Consensus       109 ~~~v~~~~~l~~al~~m~~~--~~~~~~Vvde~g~lvGiIT~~Dil~~  154 (173)
T 3ocm_A          109 PIIVHESIGILRLMDTLKRS--RGQLVLVADEFGAIEGLVTPIDVFEA  154 (173)
T ss_dssp             CCEECGGGCHHHHHHHHHHS--TTCCEEEECTTCCEEEEECHHHHHHH
T ss_pred             CeEECCCCcHHHHHHHHHHc--CCeEEEEEeCCCCEEEEEeHHHHHHH
Confidence            78999999999999999999  89999999988999999999999864

>2o16_A Acetoin utilization protein ACUB, putative; structural genomics, unknown function, PSI-2, protein struct initiative; 1.90A {Vibrio cholerae} SCOP: d.37.1.1

Probab=99.76  E-value=3.8e-18  Score=137.85  Aligned_cols=122  Identities=20%  Similarity=0.299  Sum_probs=107.1

Q ss_pred             hhhhhhccccCCCCccccCCCcHHHHHHHHHhcCcceEEEEcCCCcEEEEeeHHHHHHHHHhcC-------CchhhhhHh
Q 019775          208 IFKVQDVMKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRRTLKASG-------EGIFKLTVG  280 (336)
Q Consensus       208 ~~~v~~im~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~it~~dl~~~~~~~~-------~~~~~~~i~  280 (336)
                      .++|+++|.+.  +++++++.++.++++.|.+++++.+||+|++|+++|+|+.+||+..+....       ......++.
T Consensus         4 ~~~v~dim~~~--~~~v~~~~tl~~a~~~m~~~~~~~~pVvd~~~~lvGivt~~dl~~~~~~~~~~~~~~~~~~~~~~v~   81 (160)
T 2o16_A            4 MIKVEDMMTRH--PHTLLRTHTLNDAKHLMEALDIRHVPIVDANKKLLGIVSQRDLLAAQESSLQRSAQGDSLAFETPLF   81 (160)
T ss_dssp             CCBGGGTSEES--CCCBCTTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHHHHHHHHCC---------CCCBHH
T ss_pred             cCcHHHHhcCC--CeEECCCCcHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHHHHhhcccccccchhcccCHH
Confidence            35789999986  558999999999999999999999999998899999999999998765311       111256899


Q ss_pred             hhcCCCCeeeCCCccHHHHHHHhcCCCCCccEeEEEeCCCcEEEEEehhhHhhc
Q 019775          281 EMCNRSPRTIGPDAMAVEAMQKMESPPSPVQFLPVINRQNILIGIVTLHGLVSA  334 (336)
Q Consensus       281 ~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~l~Vv~~~~~~iGiit~~di~~~  334 (336)
                      ++|.+++.++.+++++.++++.|.++  +...+||+|+ |+++|+||+.||+++
T Consensus        82 ~im~~~~~~v~~~~~l~~a~~~m~~~--~~~~lpVvd~-g~lvGiit~~dil~~  132 (160)
T 2o16_A           82 EVMHTDVTSVAPQAGLKESAIYMQKH--KIGCLPVVAK-DVLVGIITDSDFVTI  132 (160)
T ss_dssp             HHSCSCEEEBCTTSBHHHHHHHHHHT--TCSCEEEEET-TEEEEEECHHHHHHH
T ss_pred             HHhcCCCeEECCCCCHHHHHHHHHHh--CCCEEEEEEC-CEEEEEEEHHHHHHH
Confidence            99999999999999999999999999  8999999999 999999999999874

>3sl7_A CBS domain-containing protein CBSX2; CBS-PAIR protein, redox regulator, plant CBS domain, thiored chloroplast, membrane protein; 1.91A {Arabidopsis thaliana}

Probab=99.76  E-value=3.2e-18  Score=140.76  Aligned_cols=124  Identities=30%  Similarity=0.420  Sum_probs=105.9

Q ss_pred             hhhhhccccCCCCccccCCCcHHHHHHHHHhcCcceEEEEcCCCcEEEEeeHHHHHHHHHhcC-----------------
Q 019775          209 FKVQDVMKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRRTLKASG-----------------  271 (336)
Q Consensus       209 ~~v~~im~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~it~~dl~~~~~~~~-----------------  271 (336)
                      ++|+++|.+...+++++++.++.+++++|.+++++.+||+|++|+++|+|+.+||+......+                 
T Consensus         4 ~~v~dim~~~~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~   83 (180)
T 3sl7_A            4 YTVGDFMTPRQNLHVVKPSTSVDDALELLVEKKVTGLPVIDDNWTLVGVVSDYDLLALDSISGRSQNDTNLFPDVDSTWK   83 (180)
T ss_dssp             CBHHHHSEEGGGCCCBCTTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHTCC-------------------CCC
T ss_pred             eeHHHhcCCCCCceeeCCCCcHHHHHHHHHHcCCCeEEEECCCCeEEEEEEHHHHHhhhhhccccCCcccccccccchhh
Confidence            578999998433669999999999999999999999999998899999999999984221000                 


Q ss_pred             ---------CchhhhhHhhhcCCCCeeeCCCccHHHHHHHhcCCCCCccEeEEEeCCCcEEEEEehhhHhhc
Q 019775          272 ---------EGIFKLTVGEMCNRSPRTIGPDAMAVEAMQKMESPPSPVQFLPVINRQNILIGIVTLHGLVSA  334 (336)
Q Consensus       272 ---------~~~~~~~i~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~l~Vv~~~~~~iGiit~~di~~~  334 (336)
                               ......++.++|.+++.++.+++++.++++.|.++  +.+.+||+|++|+++|+||+.||+++
T Consensus        84 ~~~~~~~~~~~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~--~~~~lpVvd~~g~~vGiit~~dil~~  153 (180)
T 3sl7_A           84 TFNELQKLISKTYGKVVGDLMTPSPLVVRDSTNLEDAARLLLET--KFRRLPVVDADGKLIGILTRGNVVRA  153 (180)
T ss_dssp             SHHHHHHHHHTTTTCBHHHHSEESCCCEETTSBHHHHHHHHTTS--TTCEEEEECTTCBEEEEEEHHHHHHH
T ss_pred             hhHHHHHHHhccccccHHHHhCCCceEeCCCCcHHHHHHHHHHc--CCCEEEEECCCCeEEEEEEHHHHHHH
Confidence                     01124679999999899999999999999999999  99999999988999999999999874

>2ef7_A Hypothetical protein ST2348; CBS-domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.10A {Sulfolobus tokodaii} SCOP: d.37.1.1

Probab=99.76  E-value=3.7e-18  Score=133.35  Aligned_cols=119  Identities=23%  Similarity=0.335  Sum_probs=106.7

Q ss_pred             hhhhhccccCCCCccccCCCcHHHHHHHHHhcCcceEEEEcCCCcEEEEeeHHHHHHHHHhcCCchhhhhHhhhcCCCCe
Q 019775          209 FKVQDVMKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRRTLKASGEGIFKLTVGEMCNRSPR  288 (336)
Q Consensus       209 ~~v~~im~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~it~~dl~~~~~~~~~~~~~~~i~~~~~~~~~  288 (336)
                      ++|+++|.+.  +++++++.++.++++.|.+++.+.+||+| +|+++|+++.+|+...+.....  ...++.++|.+++.
T Consensus         4 ~~v~~im~~~--~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd-~~~~~Givt~~dl~~~~~~~~~--~~~~v~~~~~~~~~   78 (133)
T 2ef7_A            4 EIVKEYMKTQ--VISVTKDAKLNDIAKVMTEKNIGSVIVVD-GNKPVGIITERDIVKAIGKGKS--LETKAEEFMTASLI   78 (133)
T ss_dssp             CBGGGTSBCS--CCEEETTCBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHHHHTTCC--TTCBGGGTSEECCC
T ss_pred             ccHHHhccCC--CEEECCCCcHHHHHHHHHhcCCCEEEEEE-CCEEEEEEcHHHHHHHHhcCCC--cccCHHHHcCCCCE
Confidence            5789999986  55899999999999999999999999999 8999999999999987764321  25689999988889


Q ss_pred             eeCCCccHHHHHHHhcCCCCCccEeEEEeCCCcEEEEEehhhHhhc
Q 019775          289 TIGPDAMAVEAMQKMESPPSPVQFLPVINRQNILIGIVTLHGLVSA  334 (336)
Q Consensus       289 ~v~~~~~l~~~~~~~~~~~~~~~~l~Vv~~~~~~iGiit~~di~~~  334 (336)
                      ++.+++++.++++.|.++  +.+.+||+|++|+++|+||..|++++
T Consensus        79 ~v~~~~~l~~~~~~~~~~--~~~~l~Vvd~~g~~~Giit~~dll~~  122 (133)
T 2ef7_A           79 TIREDSPITGALALMRQF--NIRHLPVVDDKGNLKGIISIRDITRA  122 (133)
T ss_dssp             CEETTSBHHHHHHHHHHH--TCSEEEEECTTSCEEEEEEHHHHHHH
T ss_pred             EECCCCCHHHHHHHHHHc--CCCEEEEECCCCeEEEEEEHHHHHHH
Confidence            999999999999999999  89999999988999999999999864

>1pvm_A Conserved hypothetical protein TA0289; structural genomics, CBS domain, PSI, protein structure initiative; 1.50A {Thermoplasma acidophilum dsm 1728} SCOP: d.37.1.1 g.41.13.1 PDB: 2qh1_A

Probab=99.76  E-value=5e-18  Score=140.40  Aligned_cols=123  Identities=12%  Similarity=0.200  Sum_probs=109.6

Q ss_pred             hhhhhhccccCCCCccccCCCcHHHHHHHHHhcCcceEEEEcCCCcEEEEeeHHHHHHHHHhcCCchhhhhHhhhcCCCC
Q 019775          208 IFKVQDVMKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRRTLKASGEGIFKLTVGEMCNRSP  287 (336)
Q Consensus       208 ~~~v~~im~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~it~~dl~~~~~~~~~~~~~~~i~~~~~~~~  287 (336)
                      .++|+++|.+.  ++++++++++.+++++|.+++++.+||+|++|+++|+++.+||+..+..........++.++|.+++
T Consensus         8 ~~~v~~im~~~--~~~v~~~~~l~ea~~~~~~~~~~~~pVvd~~g~~vGivt~~dl~~~~~~~~~~~~~~~v~~im~~~~   85 (184)
T 1pvm_A            8 FMRVEKIMNSN--FKTVNWNTTVFDAVKIMNENHLYGLVVKDDNGNDVGLLSERSIIKRFIPRNKKPDEVPIRLVMRKPI   85 (184)
T ss_dssp             CCBGGGTSBTT--CCEEETTCBHHHHHHHHHHHTCCEEEEECTTSCEEEEEEHHHHHHHTGGGCCCGGGSBGGGTSBSSC
T ss_pred             ccCHHHhcCCC--CeEECCCCcHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHHhhcccCcccCCHHHHhCCCC
Confidence            36899999876  5699999999999999999999999999988999999999999987654222234578999999989


Q ss_pred             eeeCCCccHHHHHHHhcCCCCCccEeEEEeCCCcEEEEEehhhHhhc
Q 019775          288 RTIGPDAMAVEAMQKMESPPSPVQFLPVINRQNILIGIVTLHGLVSA  334 (336)
Q Consensus       288 ~~v~~~~~l~~~~~~~~~~~~~~~~l~Vv~~~~~~iGiit~~di~~~  334 (336)
                      .++.+++++.++++.|.++  +.+.+||+|++|+++|+||..||+++
T Consensus        86 ~~v~~~~~l~~a~~~m~~~--~~~~lpVvd~~g~~~Givt~~dll~~  130 (184)
T 1pvm_A           86 PKVKSDYDVKDVAAYLSEN--GLERCAVVDDPGRVVGIVTLTDLSRY  130 (184)
T ss_dssp             CEEETTCBHHHHHHHHHHH--TCSEEEEECTTCCEEEEEEHHHHTTT
T ss_pred             cEECCCCCHHHHHHHHHHc--CCcEEEEEcCCCeEEEEEEHHHHHHH
Confidence            9999999999999999999  89999999988999999999999874

>2yzi_A Hypothetical protein PH0107; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; 2.25A {Pyrococcus horikoshii} SCOP: d.37.1.1

Probab=99.75  E-value=5e-18  Score=133.45  Aligned_cols=121  Identities=21%  Similarity=0.340  Sum_probs=106.0

Q ss_pred             hhhhhhccccCCCCccccCCCcHHHHHHHHHhcCcceEEEEcCCCcEEEEeeHHHHHHHHHhcCCchhhhhHhhhcCCCC
Q 019775          208 IFKVQDVMKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRRTLKASGEGIFKLTVGEMCNRSP  287 (336)
Q Consensus       208 ~~~v~~im~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~it~~dl~~~~~~~~~~~~~~~i~~~~~~~~  287 (336)
                      .++|+++|.++  +++++++.++.++++.|.+++++.+||+|++|+++|+|+.+||.......+. ....++.++|.+++
T Consensus         6 ~~~v~~im~~~--~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~~~-~~~~~v~~~m~~~~   82 (138)
T 2yzi_A            6 KAPIKVYMTKK--LLGVKPSTSVQEASRLMMEFDVGSLVVINDDGNVVGFFTKSDIIRRVIVPGL-PYDIPVERIMTRNL   82 (138)
T ss_dssp             TSBGGGTCBCC--CCEECTTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHTTTTCC-CTTSBGGGTCBCSC
T ss_pred             hhhHHHHhcCC--CeEECCCCcHHHHHHHHHHcCCCEEEEEcCCCcEEEEEeHHHHHHHHHhcCC-cccCCHHHHhhCCC
Confidence            35889999976  5699999999999999999999999999988999999999999754332222 23578999999999


Q ss_pred             eeeCCCccHHHHHHHhcCCCCCccEeEEEeCCCcEEEEEehhhHhhc
Q 019775          288 RTIGPDAMAVEAMQKMESPPSPVQFLPVINRQNILIGIVTLHGLVSA  334 (336)
Q Consensus       288 ~~v~~~~~l~~~~~~~~~~~~~~~~l~Vv~~~~~~iGiit~~di~~~  334 (336)
                      .++.+++++.++++.|.++  +.+.+ |+|++|+++|+||..||+++
T Consensus        83 ~~v~~~~~l~~~~~~m~~~--~~~~l-Vvd~~g~~~Giit~~dil~~  126 (138)
T 2yzi_A           83 ITANVNTPLGEVLRKMAEH--RIKHI-LIEEEGKIVGIFTLSDLLEA  126 (138)
T ss_dssp             CEEETTSBHHHHHHHHHHH--TCSEE-EEEETTEEEEEEEHHHHHHH
T ss_pred             eEECCCCcHHHHHHHHHhc--CCCEE-EECCCCCEEEEEEHHHHHHH
Confidence            9999999999999999999  89999 99977999999999999864

>1yav_A Hypothetical protein BSU14130; cystathionine beta synthase (CBS) domain, structural genomics, protein structure initiative, PSI; 2.10A {Bacillus subtilis} SCOP: d.37.1.1

Probab=99.75  E-value=5.4e-18  Score=136.75  Aligned_cols=124  Identities=17%  Similarity=0.201  Sum_probs=107.1

Q ss_pred             hhhhhhhccccCCCCccccCCCcHHHHHHHHHhcCcceEEEEcCCCcEEEEeeHHHHHHHHHhcCC----chhhhhHhhh
Q 019775          207 LIFKVQDVMKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRRTLKASGE----GIFKLTVGEM  282 (336)
Q Consensus       207 ~~~~v~~im~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~it~~dl~~~~~~~~~----~~~~~~i~~~  282 (336)
                      ..++|+++|.+...++++++++++.++++.|.+++++.+||+|++|+++|+|+..||...+.....    .....++.++
T Consensus        12 ~~~~v~~im~~~~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd~~~~lvGivt~~dl~~~~~~~~~~~~~~~~~~~v~~~   91 (159)
T 1yav_A           12 LEATVGQFMIEADKVAHVQVGNNLEHALLVLTKTGYTAIPVLDPSYRLHGLIGTNMIMNSIFGLERIEFEKLDQITVEEV   91 (159)
T ss_dssp             TTCBHHHHSEEGGGSCCEETTCBHHHHHHHHHHHCCSEEEEECTTCBEEEEEEHHHHHHHHBCSSSBCGGGTTTSBHHHH
T ss_pred             hHhhHHHHhCCccceEEECCCCcHHHHHHHHHhCCCcEEEEECCCCCEEEEeEHHHHHHHhhhhcccchhhhccCCHHHh
Confidence            356899999982225699999999999999999999999999988999999999999987754211    0235789999


Q ss_pred             cCCCCeeeCCCccHHHHHHHhcCCCCCccEeEEEeCCCcEEEEEehhhHhhc
Q 019775          283 CNRSPRTIGPDAMAVEAMQKMESPPSPVQFLPVINRQNILIGIVTLHGLVSA  334 (336)
Q Consensus       283 ~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~l~Vv~~~~~~iGiit~~di~~~  334 (336)
                      |.+++.++.+++++.++++.|.++  +.  +||+|++|+++|+||+.||+++
T Consensus        92 m~~~~~~v~~~~~l~~a~~~m~~~--~~--lpVvd~~g~~vGiit~~dil~~  139 (159)
T 1yav_A           92 MLTDIPRLHINDPIMKGFGMVINN--GF--VCVENDEQVFEGIFTRRVVLKE  139 (159)
T ss_dssp             SBCSCCEEETTSBHHHHHHHTTTC--SE--EEEECTTCBEEEEEEHHHHHHH
T ss_pred             cCCCCceEcCCCCHHHHHHHHHhC--CE--EEEEeCCCeEEEEEEHHHHHHH
Confidence            999999999999999999999988  66  9999988999999999999864

>3fv6_A YQZB protein; CBS domain dimer, metabolism regulator, central glycolytic G regulator, transcription; 1.95A {Bacillus subtilis} PDB: 3fwr_A* 3fws_A*

Probab=99.75  E-value=5.1e-18  Score=136.93  Aligned_cols=121  Identities=20%  Similarity=0.308  Sum_probs=107.7

Q ss_pred             hhhhhhccccCCCCccccCCCcHHHHHHHHHhcCcceEEEEcCCCcEEEEeeHHHHHHHHHhcCCchhhhhHhhhcCC--
Q 019775          208 IFKVQDVMKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRRTLKASGEGIFKLTVGEMCNR--  285 (336)
Q Consensus       208 ~~~v~~im~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~it~~dl~~~~~~~~~~~~~~~i~~~~~~--  285 (336)
                      .++|+++|.+ +  ++++++.++.++++.|.+++++.+||+|++|+++|+||.+||+..+... ......++.++|.+  
T Consensus        16 ~~~v~~im~~-~--~~v~~~~~~~~a~~~m~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~-~~~~~~~v~~~m~~~~   91 (159)
T 3fv6_A           16 KLQVKDFQSI-P--VVIHENVSVYDAICTMFLEDVGTLFVVDRDAVLVGVLSRKDLLRASIGQ-QELTSVPVHIIMTRMP   91 (159)
T ss_dssp             TCBGGGSCBC-C--CEEETTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHTSC-SCTTTCBGGGTSEETT
T ss_pred             hCCHHHHcCC-C--EEECCCCcHHHHHHHHHHCCCCEEEEEcCCCcEEEEEeHHHHHHHhhcc-CcccCcCHHHHHcCCC
Confidence            5689999986 2  3899999999999999999999999999889999999999999977542 22235789999987  


Q ss_pred             CCeeeCCCccHHHHHHHhcCCCCCccEeEEEeCCC---cEEEEEehhhHhhc
Q 019775          286 SPRTIGPDAMAVEAMQKMESPPSPVQFLPVINRQN---ILIGIVTLHGLVSA  334 (336)
Q Consensus       286 ~~~~v~~~~~l~~~~~~~~~~~~~~~~l~Vv~~~~---~~iGiit~~di~~~  334 (336)
                      ++.++.+++++.++++.|.++  +...+||+|++|   +++|+||+.||+++
T Consensus        92 ~~~~v~~~~~l~~a~~~m~~~--~~~~lpVvd~~g~~~~~vGiit~~dil~~  141 (159)
T 3fv6_A           92 NITVCRREDYVMDIAKHLIEK--QIDALPVIKDTDKGFEVIGRVTKTNMTKI  141 (159)
T ss_dssp             SCCCBCTTSBHHHHHHHHHHH--TCSEEEEEEECSSSEEEEEEEEHHHHHHH
T ss_pred             CcEEECCCCCHHHHHHHHHHc--CCcEEEEEeCCCcceeEEEEEEHHHHHHH
Confidence            888999999999999999999  899999999877   99999999999874

>4fry_A Putative signal-transduction protein with CBS DOM; CBS domain,ssgcid, structural genomics, niaid; HET: NAD AMP; 2.10A {Burkholderia ambifaria}

Probab=99.74  E-value=6.9e-18  Score=135.76  Aligned_cols=122  Identities=25%  Similarity=0.422  Sum_probs=108.1

Q ss_pred             hhhhhccccC----CCCccccCCCcHHHHHHHHHhcCcceEEEEcCCCcEEEEeeHHHHHHHHHhcCCchhhhhHhhhcC
Q 019775          209 FKVQDVMKPQ----KELPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRRTLKASGEGIFKLTVGEMCN  284 (336)
Q Consensus       209 ~~v~~im~~~----~~~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~it~~dl~~~~~~~~~~~~~~~i~~~~~  284 (336)
                      .+|+++|.+.    ..++++++++++.+|++.|.+++++.+||++ +|+++|+|+.+||+..+..........++.++|.
T Consensus         7 ~~v~dim~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~~~~~V~~-~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~~m~   85 (157)
T 4fry_A            7 TTVAQILKAKPDSGRTIYTVTKNDFVYDAIKLMAEKGIGALLVVD-GDDIAGIVTERDYARKVVLQERSSKATRVEEIMT   85 (157)
T ss_dssp             CBHHHHHHHSTTTTCCCCEEETTSBHHHHHHHHHHHTCSEEEEES-SSSEEEEEEHHHHHHHSGGGTCCSSSCBHHHHSB
T ss_pred             HHHHHHHhcccccCCCCeEECCCCcHHHHHHHHHHcCCCEEEEee-CCEEEEEEEHHHHHHHHHhccCCccccCHHHHcC
Confidence            4699999965    3467999999999999999999999999965 8899999999999988765443334678999999


Q ss_pred             CCCeeeCCCccHHHHHHHhcCCCCCccEeEEEeCCCcEEEEEehhhHhhc
Q 019775          285 RSPRTIGPDAMAVEAMQKMESPPSPVQFLPVINRQNILIGIVTLHGLVSA  334 (336)
Q Consensus       285 ~~~~~v~~~~~l~~~~~~~~~~~~~~~~l~Vv~~~~~~iGiit~~di~~~  334 (336)
                      +++.++.+++++.++++.|.++  +.+.+||+| +|+++|+||+.||+++
T Consensus        86 ~~~~~v~~~~~l~~~~~~m~~~--~~~~lpVvd-~g~~~Giit~~dil~~  132 (157)
T 4fry_A           86 AKVRYVEPSQSTDECMALMTEH--RMRHLPVLD-GGKLIGLISIGDLVKS  132 (157)
T ss_dssp             SSCCCBCTTSBHHHHHHHHHHH--TCSEEEEEE-TTEEEEEEEHHHHHHH
T ss_pred             CCCcEECCCCcHHHHHHHHHHc--CCCEEEEEE-CCEEEEEEEHHHHHHH
Confidence            9999999999999999999999  899999999 5999999999999874

>2nyc_A Nuclear protein SNF4; bateman2 domain, AMP kinase, protein binding; 1.90A {Saccharomyces cerevisiae} SCOP: d.37.1.1 PDB: 2nye_A

Probab=99.74  E-value=1.2e-17  Score=132.08  Aligned_cols=122  Identities=20%  Similarity=0.291  Sum_probs=102.6

Q ss_pred             hhhhh---ccccCCCCccccCCCcHHHHHHHHHhcCcceEEEEcCCCcEEEEeeHHHHHHHHHhcCCchhhhhHhhhcCC
Q 019775          209 FKVQD---VMKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRRTLKASGEGIFKLTVGEMCNR  285 (336)
Q Consensus       209 ~~v~~---im~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~it~~dl~~~~~~~~~~~~~~~i~~~~~~  285 (336)
                      .++++   +|.+.  ++++++++++.++++.|.+++++.+||+|++|+++|+++.+|+...+..........++.++|.+
T Consensus         8 ~~v~~~~~~~~~~--~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~v~~~m~~   85 (144)
T 2nyc_A            8 IPIGDLNIITQDN--MKSCQMTTPVIDVIQMLTQGRVSSVPIIDENGYLINVYEAYDVLGLIKGGIYNDLSLSVGEALMR   85 (144)
T ss_dssp             SBGGGSSCCBCSS--CCCBCTTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHHHHHHTC----CCSBHHHHHHH
T ss_pred             cchhhcCCCCCCC--ceEECCCCcHHHHHHHHHHcCcceeeEEcCCCcEEEEEcHHHHHHHhcccccccCCccHHHHHhc
Confidence            45677   77665  56899999999999999999999999999889999999999999877642211224678888865


Q ss_pred             ------CCeeeCCCccHHHHHHHhcCCCCCccEeEEEeCCCcEEEEEehhhHhhc
Q 019775          286 ------SPRTIGPDAMAVEAMQKMESPPSPVQFLPVINRQNILIGIVTLHGLVSA  334 (336)
Q Consensus       286 ------~~~~v~~~~~l~~~~~~~~~~~~~~~~l~Vv~~~~~~iGiit~~di~~~  334 (336)
                            ++.++.+++++.++++.|.++  +.+.+||+|++|+++|+||+.||+++
T Consensus        86 ~~~~~~~~~~v~~~~~l~~~~~~m~~~--~~~~l~Vvd~~g~~~Giit~~dil~~  138 (144)
T 2nyc_A           86 RSDDFEGVYTCTKNDKLSTIMDNIRKA--RVHRFFVVDDVGRLVGVLTLSDILKY  138 (144)
T ss_dssp             CC------CEECTTSBHHHHHHHHHHH--TCSEEEEECTTSBEEEEEEHHHHHHH
T ss_pred             CccccCCCeEECCCCcHHHHHHHHHHC--CCCEEEEECCCCCEEEEEEHHHHHHH
Confidence                  578999999999999999999  89999999988999999999999874

>1o50_A CBS domain-containing predicted protein TM0935; CBS-domain PAIR fold, structural genomics, joint center for structural genomics, JCSG; 1.87A {Thermotoga maritima} SCOP: d.37.1.1

Probab=99.74  E-value=1.6e-17  Score=133.68  Aligned_cols=121  Identities=16%  Similarity=0.189  Sum_probs=106.2

Q ss_pred             hhhhhhccccCCCCccccCCCcHHHHHHHHHhcCcce-EEEEcCCCcEEEEeeHHHHHHHHHhc--------------CC
Q 019775          208 IFKVQDVMKPQKELPVCKEGDLIMDQLVELTSKGCGC-LLVIDEEYHLIGTFTDGDLRRTLKAS--------------GE  272 (336)
Q Consensus       208 ~~~v~~im~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-ipVvd~~~~~~G~it~~dl~~~~~~~--------------~~  272 (336)
                      .++|+++|.+.  ++++++++++.+|++.|.+++.+. +||+|++ +++|+|+.+||+..+...              ..
T Consensus        15 ~~~v~~im~~~--~~~v~~~~tl~ea~~~m~~~~~~~~~~Vvd~~-~~vGivt~~dl~~~~~~~~~~~~~~~~~~~~~~~   91 (157)
T 1o50_A           15 VKDVCKLISLK--PTVVEEDTPIEEIVDRILEDPVTRTVYVARDN-KLVGMIPVMHLLKVSGFHFFGFIPKEELIRSSMK   91 (157)
T ss_dssp             HHHHTTSSCCC--CEEECTTCBHHHHHHHHHHSTTCCEEEEEETT-EEEEEEEHHHHHHHHHHHHHCCCC-------CCC
T ss_pred             cccHhhcccCC--CceECCCCCHHHHHHHHHhCCCCccEEEEECC-EEEEEEEHHHHHHHHhhhHHhhhccHHHHHHHHH
Confidence            45899999986  569999999999999999999999 9999977 999999999999875421              01


Q ss_pred             chhhhhHhhhcCCCCeeeCCCccHHHHHHHhcCCCCCccEeEEEeCCCcEEEEEehhhHhhc
Q 019775          273 GIFKLTVGEMCNRSPRTIGPDAMAVEAMQKMESPPSPVQFLPVINRQNILIGIVTLHGLVSA  334 (336)
Q Consensus       273 ~~~~~~i~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~l~Vv~~~~~~iGiit~~di~~~  334 (336)
                      .....++.++|.+ +.++.+++++.++++.|.++  +...+||+|++|+++|+||+.||+++
T Consensus        92 ~~~~~~v~~im~~-~~~v~~~~~l~~a~~~m~~~--~~~~lpVvd~~g~~vGiit~~dll~~  150 (157)
T 1o50_A           92 RLIAKNASEIMLD-PVYVHMDTPLEEALKLMIDN--NIQEMPVVDEKGEIVGDLNSLEILLA  150 (157)
T ss_dssp             CCSSCBHHHHCBC-CCCBCTTSBHHHHHHHHHHH--TCSEEEEECTTSCEEEEEEHHHHHHH
T ss_pred             HHcCCcHHHHcCC-CeEECCCCCHHHHHHHHHHC--CCcEEEEEcCCCEEEEEEEHHHHHHH
Confidence            1235689999999 99999999999999999999  89999999977999999999999864

>2emq_A Hypothetical conserved protein; CBS domains, NPPSFA, national project on protein structural functional analyses; 2.50A {Geobacillus kaustophilus}

Probab=99.73  E-value=9.5e-18  Score=134.86  Aligned_cols=123  Identities=20%  Similarity=0.307  Sum_probs=106.0

Q ss_pred             hhhhhhccccCCCCccccCCCcHHHHHHHHHhcCcceEEEEcCCCcEEEEeeHHHHHHHHHhcC----CchhhhhHhhhc
Q 019775          208 IFKVQDVMKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRRTLKASG----EGIFKLTVGEMC  283 (336)
Q Consensus       208 ~~~v~~im~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~it~~dl~~~~~~~~----~~~~~~~i~~~~  283 (336)
                      .++|+++|.+...+++++++.++.++++.|.+++++.+||+|++|+++|+|+.+|+...+....    ......++.++|
T Consensus        10 ~~~v~~im~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~v~~~m   89 (157)
T 2emq_A           10 QMTVKPFLIPADKVAHVQPGNYLDHALLVLTKTGYSAIPVLDTSYKLHGLISMTMMMDAILGLERIEFERLETMKVEEVM   89 (157)
T ss_dssp             CCBSTTTCEEGGGSCCBCTTSBHHHHHHHHHHSSSSEEEEECTTCCEEEEEEHHHHHHHSBCSSSBCGGGGGTCBGGGTC
T ss_pred             hCcHHhhccCCccceEECCCCcHHHHHHHHHHCCceEEEEEcCCCCEEEEeeHHHHHHHHhcccccchHHhcCCcHHHHh
Confidence            4689999997223668999999999999999999999999998899999999999998764311    112356899999


Q ss_pred             CCCCeeeCCCccHHHHHHHhcCCCCCccEeEEEeCCCcEEEEEehhhHhhc
Q 019775          284 NRSPRTIGPDAMAVEAMQKMESPPSPVQFLPVINRQNILIGIVTLHGLVSA  334 (336)
Q Consensus       284 ~~~~~~v~~~~~l~~~~~~~~~~~~~~~~l~Vv~~~~~~iGiit~~di~~~  334 (336)
                      .+++.++.+++++.++++.|.++  +.  +||+|++|+++|+||+.||++.
T Consensus        90 ~~~~~~v~~~~~l~~a~~~m~~~--~~--l~Vvd~~g~~~Giit~~dil~~  136 (157)
T 2emq_A           90 NRNIPRLRLDDSLMKAVGLIVNH--PF--VCVENDDGYFAGIFTRREVLKQ  136 (157)
T ss_dssp             BCCCCEEETTSBHHHHHHHHHHS--SE--EEEECSSSSEEEEEEHHHHHHH
T ss_pred             CCCCceecCCCcHHHHHHHHhhC--CE--EEEEcCCCeEEEEEEHHHHHHH
Confidence            99999999999999999999988  66  9999988999999999999864

>3i0z_A Putative tagatose-6-phosphate ketose/aldose isome; NP_344614.1, putative putative tagatose-6-phosphate ketose/A isomerase; HET: MSE; 1.70A {Streptococcus pneumoniae TIGR4}

Probab=99.73  E-value=2.6e-17  Score=150.94  Aligned_cols=162  Identities=20%  Similarity=0.177  Sum_probs=123.5

Q ss_pred             hHHHHHHHHHHHHHHHHHHhcCC--hhHHHHHHH-HHHcCC-CeEEEEeccchHHHHHHHHHHHHh-cCCe---eeecCC
Q 019775           17 ENTLLDLFKSQQDHLNYFFQHLS--LPHTLTFTQ-TLLKCR-GTIFFTGVGKSGFVANKISQTLIS-LGIK---SGFLNP   88 (336)
Q Consensus        17 ~~~~~~~~~~~~~~l~~~~~~~~--~~~i~~~~~-~i~~a~-~~I~i~G~G~s~~~a~~~~~~l~~-~g~~---~~~~~~   88 (336)
                      ...+.+-+.++.+.++++++...  ...+..+.. .+.+.+ ++|+++|+|+|+.+|..++++|.+ .|.+   +..++.
T Consensus        15 ~~~m~kEI~eQP~~~~~tl~~~~~~~~~~~~~~~~~~~~~~~~~I~i~G~GtS~~aa~~~~~~l~~~~g~~~~~v~a~~~   94 (389)
T 3i0z_A           15 AEITTREIYQQPDVWREAFEFYQAKREEIAAFLQEIADKHDYIKVILTGAGTSAYVGDTLLPYFKEVYDERKWNFNAIAT   94 (389)
T ss_dssp             CHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSEEEEEECSTHHHHHHHHHHHHHHHHSCTTTEEEEECCH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHhcCCCCeEEEEEechHHHHHHHHHHHHHHHhCCCCceEEeccc
Confidence            34566667777888888877643  134555543 345542 499999999999999999999998 4888   665543


Q ss_pred             ccccccc--cCCCCCCcEEEEEeCCCCcHHHHHHHHHHHHc--CCeEEEEeCCCCCccccccCE-----EEEcCC-Cccc
Q 019775           89 LDALHGD--IGILSSDDILVMFSKSGNTEELLKVVPCAKAK--GAYLVSVTSVEGNALAAVCDM-----NVHLPV-EREL  158 (336)
Q Consensus        89 ~~~~~~~--~~~~~~~dlvi~iS~sG~~~~~~~~~~~ak~~--g~~vi~IT~~~~s~l~~~ad~-----~i~~~~-~~~~  158 (336)
                      .+.....  ....+++|++|+||+||+|++++++++.||++  |+++|+||++.+|++++.||+     .+.++. +.+ 
T Consensus        95 ~~~~ase~~~~~~~~~dl~i~iS~SG~T~e~~~al~~ak~~~~g~~~i~IT~~~~s~la~~ad~~~~~~~i~~~~~~~E-  173 (389)
T 3i0z_A           95 TDIVANPATYLKKDVATVLVSFARSGNSPESLATVDLAKSLVDELYQVTITCAADGKLALQAHGDDRNLLLLQPAVSND-  173 (389)
T ss_dssp             HHHTTCHHHHCCTTSEEEEEEEESSSCCHHHHHHHHHHHHHCSSEEEEEEESCTTSHHHHTSSSCTTEEEEECCGGGSC-
T ss_pred             cccccChHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHhhcCCCcEEEEECCCCCHHHHHccccccceEEeccccccc-
Confidence            3321111  11237999999999999999999999999999  999999999999999999998     788774 333 


Q ss_pred             CCCCCCChhHHHHHHHHHHHHHH
Q 019775          159 CPFDLAPVTSTAIQMVFGDTVAI  181 (336)
Q Consensus       159 ~~~~~~~~~s~~~~~~l~d~l~~  181 (336)
                        .....+.|.+++++.+.+|+.
T Consensus       174 --~~va~Tks~t~ql~~l~ll~~  194 (389)
T 3i0z_A          174 --AGFAMTSSFTSMMLTTLLVFD  194 (389)
T ss_dssp             --CSSSCSHHHHHHHHHHHHHHC
T ss_pred             --ccccccHHHHHHHHHHHHHHH
Confidence              455778899999987777653

>3kxr_A Magnesium transporter, putative; cystathionine beta-synthase, Mg2+ transporter, structural GE PSI-2, protein structure initiative; 2.41A {Shewanella oneidensis mr-1}

Probab=99.72  E-value=1.9e-17  Score=139.19  Aligned_cols=115  Identities=18%  Similarity=0.213  Sum_probs=104.1

Q ss_pred             hhhhhccccCCCCccccCCCcHHHHHHHHHhc---CcceEEEEcCCCcEEEEeeHHHHHHHHHhcCCchhhhhHhhhcCC
Q 019775          209 FKVQDVMKPQKELPVCKEGDLIMDQLVELTSK---GCGCLLVIDEEYHLIGTFTDGDLRRTLKASGEGIFKLTVGEMCNR  285 (336)
Q Consensus       209 ~~v~~im~~~~~~~~~~~~~~v~~~~~~~~~~---~~~~ipVvd~~~~~~G~it~~dl~~~~~~~~~~~~~~~i~~~~~~  285 (336)
                      .+|+++|.+.  +++++++.|+.++++.|.+.   +...+||+|++|+++|+|+.+||+..    .   ...++.++|.+
T Consensus        54 ~~v~~iM~~~--~~~v~~~~tv~eal~~~~~~~~~~~~~~~Vvd~~~~lvGivt~~dll~~----~---~~~~v~~im~~  124 (205)
T 3kxr_A           54 NEIGRYTDHQ--MLVLSDKATVAQAQRFFRRIELDCNDNLFIVDEADKYLGTVRRYDIFKH----E---PHEPLISLLSE  124 (205)
T ss_dssp             TCGGGGCBCC--CCEEETTCBHHHHHHHHHHCCCTTCCEEEEECTTCBEEEEEEHHHHTTS----C---TTSBGGGGCCS
T ss_pred             chHHhhccCc--eEEECCCCcHHHHHHHHHhhCccCeeEEEEEcCCCeEEEEEEHHHHHhC----C---CcchHHHHhcC
Confidence            4789999997  56999999999999999987   78999999999999999999998742    1   25689999999


Q ss_pred             CCeeeCCCccHHHHHHHhcCCCCCccEeEEEeCCCcEEEEEehhhHhhc
Q 019775          286 SPRTIGPDAMAVEAMQKMESPPSPVQFLPVINRQNILIGIVTLHGLVSA  334 (336)
Q Consensus       286 ~~~~v~~~~~l~~~~~~~~~~~~~~~~l~Vv~~~~~~iGiit~~di~~~  334 (336)
                      ++.++.+++++.++++.|.++  +...+||+|++|+++|+||..|+++.
T Consensus       125 ~~~~v~~~~~l~~a~~~m~~~--~~~~lpVVD~~g~lvGiIT~~Dil~~  171 (205)
T 3kxr_A          125 DSRALTANTTLLDAAEAIEHS--REIELPVIDDAGELIGRVTLRAATAL  171 (205)
T ss_dssp             SCCCEETTSCHHHHHHHHHTS--SCSEEEEECTTSBEEEEEEHHHHHHH
T ss_pred             CCeEECCCCCHHHHHHHHHhc--CCCEEEEEcCCCeEEEEEEHHHHHHH
Confidence            999999999999999999999  99999999998999999999999863

>2pfi_A Chloride channel protein CLC-Ka; cystathionine beta synthetase (CBS) domains containing protein, transport protein; 1.60A {Homo sapiens}

Probab=99.70  E-value=6.7e-17  Score=130.71  Aligned_cols=122  Identities=15%  Similarity=0.162  Sum_probs=104.2

Q ss_pred             hhhhhhccccCCCCccccCCCcHHHHHHHHHhcCcceEEEEcC--CCcEEEEeeHHHHHHHHHhcCCc---hhhhhHhhh
Q 019775          208 IFKVQDVMKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVIDE--EYHLIGTFTDGDLRRTLKASGEG---IFKLTVGEM  282 (336)
Q Consensus       208 ~~~v~~im~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~--~~~~~G~it~~dl~~~~~~~~~~---~~~~~i~~~  282 (336)
                      .++|+++|.+.  ++++++++++.++++.|.+++++.+||+|+  +|+++|+|+..||...+......   ....++.++
T Consensus        12 ~~~v~dim~~~--~~~v~~~~~~~~a~~~~~~~~~~~~pVvd~~~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~v~~~   89 (164)
T 2pfi_A           12 HVRVEHFMNHS--ITTLAKDTPLEEVVKVVTSTDVTEYPLVESTESQILVGIVQRAQLVQALQAEPPSRAPGHQQCLQDI   89 (164)
T ss_dssp             SCBHHHHCBCC--CCCEETTCBHHHHHHHHHTCCCSEEEEESCTTTCBEEEEEEHHHHHHHHHC-------CCCCBHHHH
T ss_pred             CCCHHHHcCCC--CeEECCCCcHHHHHHHHHhCCCCceeEEecCCCCEEEEEEEHHHHHHHHHhhccccCCcccchhhhh
Confidence            46899999986  568999999999999999999999999996  78999999999999877542211   013568888


Q ss_pred             cCCC------CeeeCCCccHHHHHHHhcCCCCCccEeEEEeCCCcEEEEEehhhHhhc
Q 019775          283 CNRS------PRTIGPDAMAVEAMQKMESPPSPVQFLPVINRQNILIGIVTLHGLVSA  334 (336)
Q Consensus       283 ~~~~------~~~v~~~~~l~~~~~~~~~~~~~~~~l~Vv~~~~~~iGiit~~di~~~  334 (336)
                      |.++      +.++.+++++.++++.|.++  +.+.+||+| +|+++|+||+.||+++
T Consensus        90 m~~~~~~~~~~~~v~~~~~l~~~~~~m~~~--~~~~lpVvd-~g~l~Giit~~dil~~  144 (164)
T 2pfi_A           90 LARGCPTEPVTLTLFSETTLHQAQNLFKLL--NLQSLFVTS-RGRAVGCVSWVEMKKA  144 (164)
T ss_dssp             HHTTCCCBCCCCCEETTCBHHHHHHHHHHT--TCSEEEEEE-TTEEEEEEEHHHHHHH
T ss_pred             hcccccccCCceEECCCCcHHHHHHHHHHh--CCCEEEEEE-CCEEEEEEEHHHHHHH
Confidence            8776      78899999999999999999  899999999 5999999999999864

>2j9l_A Chloride channel protein 5; ION channel, ION transport, voltage-gated; HET: ATP; 2.30A {Homo sapiens} SCOP: d.37.1.1 PDB: 2ja3_A*

Probab=99.70  E-value=6.4e-17  Score=133.56  Aligned_cols=124  Identities=18%  Similarity=0.187  Sum_probs=107.2

Q ss_pred             hhhhhhccccCCC--Cccc--cCCCcHHHHHHHHHhcCcceEEEE--cCCCcEEEEeeHHHHHHHHHhcC----------
Q 019775          208 IFKVQDVMKPQKE--LPVC--KEGDLIMDQLVELTSKGCGCLLVI--DEEYHLIGTFTDGDLRRTLKASG----------  271 (336)
Q Consensus       208 ~~~v~~im~~~~~--~~~~--~~~~~v~~~~~~~~~~~~~~ipVv--d~~~~~~G~it~~dl~~~~~~~~----------  271 (336)
                      .++|+++|.+...  ++++  .++.++.+|++.|.+++++.+||+  |++|+++|+|+..||+..+....          
T Consensus        10 ~~~v~dim~~~~~~~~~~v~~~~~~~~~~a~~~~~~~~~~~~pVv~~d~~~~lvGiit~~dl~~~~~~~~~~~~~~~~~~   89 (185)
T 2j9l_A           10 KTLAMDVMKPRRNDPLLTVLTQDSMTVEDVETIISETTYSGFPVVVSRESQRLVGFVLRRDLIISIENARKKQDGVVSTS   89 (185)
T ss_dssp             CCBHHHHSBSCTTSCCCCCEESSCEEHHHHHHHHHHCCCSEEEEESCTTTCBEEEEEEHHHHHHHHHHHHTSCSCCCTTC
T ss_pred             cCcHHHHhcccccCceEEEecCCCccHHHHHHHHHhcCCCceeEEEECCCCeEEEEEEHHHHHHHHHhhcccCCCccccc
Confidence            4589999998732  4577  999999999999999999999999  77899999999999998775421          


Q ss_pred             -------------CchhhhhHhhhcCCCCeeeCCCccHHHHHHHhcCCCCCccEeEEEeCCCcEEEEEehhhHhhc
Q 019775          272 -------------EGIFKLTVGEMCNRSPRTIGPDAMAVEAMQKMESPPSPVQFLPVINRQNILIGIVTLHGLVSA  334 (336)
Q Consensus       272 -------------~~~~~~~i~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~l~Vv~~~~~~iGiit~~di~~~  334 (336)
                                   ......++.++|.+++.++.+++++.++++.|.++  +.+.+||++ +|+++|+||+.||+++
T Consensus        90 ~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~--~~~~l~Vvd-~g~~vGiit~~dll~~  162 (185)
T 2j9l_A           90 IIYFTEHSPPLPPYTPPTLKLRNILDLSPFTVTDLTPMEIVVDIFRKL--GLRQCLVTH-NGRLLGIITKKDVLKH  162 (185)
T ss_dssp             EEECSSSCCCCCTTCCCCEECGGGEESSCCEEETTSBHHHHHHHHHHH--TCSEEEEEE-TTEEEEEEEHHHHHHH
T ss_pred             eeecccCCcccccccccCccHHHhhCcCCeEeCCCCCHHHHHHHHHhC--CCcEEEEEE-CCEEEEEEEHHHHHHH
Confidence                         01124678999988999999999999999999999  899999999 6999999999999874

>3l2b_A Probable manganase-dependent inorganic pyrophosphatase; family II, CBS domain, bateman domain, AP4A, diadenosine polyphosphate, DRTGG; HET: B4P; 2.27A {Clostridium perfringens} PDB: 3l31_A*

Probab=99.69  E-value=1.3e-16  Score=137.99  Aligned_cols=124  Identities=17%  Similarity=0.237  Sum_probs=104.0

Q ss_pred             hhhhhhhccccCCCCccccCCCcHHHHHHHHHhcCcceEEEEcCCCcEEEEeeHHHHHHHHHhcCCc-------------
Q 019775          207 LIFKVQDVMKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRRTLKASGEG-------------  273 (336)
Q Consensus       207 ~~~~v~~im~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~it~~dl~~~~~~~~~~-------------  273 (336)
                      +..+|+++|.++  ++++++++++.+|+++|.+++++.+||+|++|+++|++|..|+...+......             
T Consensus         5 ~~~~v~~im~~~--~~~v~~~~~~~~a~~~m~~~~~~~lpVvd~~~~l~Giit~~di~~~~~~~~~~~~~~~~~~~~~~v   82 (245)
T 3l2b_A            5 VKLKVEDLEMDK--IAPLAPEVSLKMAWNIMRDKNLKSIPVADGNNHLLGMLSTSNITATYMDIWDSNILAKSATSLDNI   82 (245)
T ss_dssp             CCCBGGGSCCBC--CCCBCTTCBHHHHHHHHHHTTCSEEEEECTTCBEEEEEEHHHHHHHHHCCCCTTHHHHTTCCHHHH
T ss_pred             ccCcHHHhcCCC--CcEECCCCcHHHHHHHHHHcCCCEEEEEcCCCEEEEEEEHHHHHHHHHHhhhhhhhhhccCCHHHH
Confidence            345899999987  45999999999999999999999999999889999999999999876432100             


Q ss_pred             --------------------------------------------------------------------------------
Q 019775          274 --------------------------------------------------------------------------------  273 (336)
Q Consensus       274 --------------------------------------------------------------------------------  273 (336)
                                                                                                      
T Consensus        83 ~~~l~~~~l~~~~~~~~~~g~~~i~a~~~~~~~~~~~~~~ivIvgdr~~~~~~~i~~~~~~liit~~~~~~~~v~~~a~~  162 (245)
T 3l2b_A           83 LDTLSAEAQNINEERKVFPGKVVVAAMQAESLKEFISEGDIAIAGDRAEIQAELIELKVSLLIVTGGHTPSKEIIELAKK  162 (245)
T ss_dssp             HHHTTCEEEECCTTCCCCCSCEEECCSCGGGGGGTCCTTCEEEECSCHHHHHHHHHTTCSEEEECTTCCCCHHHHHHHHH
T ss_pred             HHHhCCEEEeccCCcceeeeeEEEEeCChHHHHhcCCCCCEEEECCCHHHHHHHHHcCCCEEEECCCCCCCHHHHHHHHH
Confidence                                                                                            


Q ss_pred             -------------------hhhhhHhhhcC-CCCeeeCCCccHHHHHHHhcCCCCCccEeEEEeCCCcEEEEEehhhHhh
Q 019775          274 -------------------IFKLTVGEMCN-RSPRTIGPDAMAVEAMQKMESPPSPVQFLPVINRQNILIGIVTLHGLVS  333 (336)
Q Consensus       274 -------------------~~~~~i~~~~~-~~~~~v~~~~~l~~~~~~~~~~~~~~~~l~Vv~~~~~~iGiit~~di~~  333 (336)
                                         ....++.++|. +++.++.+++++.++++.|.++  +.+.+||+|++|+++|+||++|+++
T Consensus       163 ~~~~~i~t~~d~~~~~~~~~~~~~v~~im~~~~~~~~~~~~~~~~~~~~m~~~--~~~~~pVvd~~~~~~Giit~~dll~  240 (245)
T 3l2b_A          163 NNITVITTPHDSFTASRLIVQSLPVDYVMTKDNLVAVSTDDLVEDVKVTMSET--RYSNYPVIDENNKVVGSIARFHLIS  240 (245)
T ss_dssp             HTCEEEECSSCHHHHHHHGGGGSBHHHHSBCTTCCCEETTSBHHHHHHHHHHH--CCSEEEEECTTCBEEEEEECC----
T ss_pred             cCCeEEEeCCChHHHHHHHhcCCceeeEecCCccEEECCCCcHHHHHHHHHhc--CCceEEEEcCCCeEEEEEEHHHhhc
Confidence                               01346889998 8899999999999999999999  9999999998899999999999987


Q ss_pred             c
Q 019775          334 A  334 (336)
Q Consensus       334 ~  334 (336)
                      +
T Consensus       241 ~  241 (245)
T 3l2b_A          241 T  241 (245)
T ss_dssp             -
T ss_pred             h
Confidence            5

>1vr9_A CBS domain protein/ACT domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE; 1.70A {Thermotoga maritima} SCOP: d.37.1.1

Probab=99.67  E-value=1.3e-16  Score=135.08  Aligned_cols=116  Identities=20%  Similarity=0.239  Sum_probs=104.7

Q ss_pred             hhhhhhccccCCCCccccCCCcHHHHHHHHHhcCcceEEEEcCCCcEEEEeeHHHHHHHHHhcCCchhhhhHhhhcCCCC
Q 019775          208 IFKVQDVMKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRRTLKASGEGIFKLTVGEMCNRSP  287 (336)
Q Consensus       208 ~~~v~~im~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~it~~dl~~~~~~~~~~~~~~~i~~~~~~~~  287 (336)
                      ..+++++|.++  ++++.++.++.++.++|.+++.+.+||+|++++++|+||.+|+.....       ..++.++|.+++
T Consensus        12 ~~~~~~~~~~~--~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~~~l~Givt~~dl~~~~~-------~~~v~~im~~~~   82 (213)
T 1vr9_A           12 HMKVKKWVTQD--FPMVEESATVRECLHRMRQYQTNECIVKDREGHFRGVVNKEDLLDLDL-------DSSVFNKVSLPD   82 (213)
T ss_dssp             -CBGGGGCBSC--SCEEETTCBHHHHHHHHHHTTSSEEEEECTTSBEEEEEEGGGGTTSCT-------TSBSGGGCBCTT
T ss_pred             ccCHHHhhcCC--CeEECCCCcHHHHHHHHHHCCCCEEEEEcCCCEEEEEEEHHHHHhhcC-------CCcHHHHccCCC
Confidence            45788999987  459999999999999999999999999998899999999999886432       457999999999


Q ss_pred             eeeCCCccHHHHHHHhcCCCCCccEeEEEeCCCcEEEEEehhhHhhc
Q 019775          288 RTIGPDAMAVEAMQKMESPPSPVQFLPVINRQNILIGIVTLHGLVSA  334 (336)
Q Consensus       288 ~~v~~~~~l~~~~~~~~~~~~~~~~l~Vv~~~~~~iGiit~~di~~~  334 (336)
                      .++.+++++.++++.|.++  +...+||+|++|+++|+||..|+++.
T Consensus        83 ~~v~~~~~l~~a~~~m~~~--~~~~lpVvd~~g~lvGiit~~Dil~~  127 (213)
T 1vr9_A           83 FFVHEEDNITHALLLFLEH--QEPYLPVVDEEMRLKGAVSLHDFLEA  127 (213)
T ss_dssp             CCEETTSBHHHHHHHHHHC--CCSEEEEECTTCBEEEEEEHHHHHHH
T ss_pred             EEECCCCcHHHHHHHHHHh--CCCEEEEEcCCCEEEEEEEHHHHHHH
Confidence            9999999999999999999  99999999988999999999999864

>3t4n_C Nuclear protein SNF4; CBS domain, nucleotide binding, cytosol, protein binding; HET: ADP; 2.30A {Saccharomyces cerevisiae} PDB: 3tdh_C* 3te5_C* 2qlv_C

Probab=99.66  E-value=4.9e-16  Score=139.77  Aligned_cols=122  Identities=20%  Similarity=0.288  Sum_probs=106.9

Q ss_pred             hhhhhc---cccCCCCccccCCCcHHHHHHHHHhcCcceEEEEcCCCcEEEEeeHHHHHHHHHhcCCchhhhhHhhhcCC
Q 019775          209 FKVQDV---MKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRRTLKASGEGIFKLTVGEMCNR  285 (336)
Q Consensus       209 ~~v~~i---m~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~it~~dl~~~~~~~~~~~~~~~i~~~~~~  285 (336)
                      .+++++   |.+.  ++++++++++.++++.|.+++++.+||+|++|+++|+||.+|++..+..........++.++|.+
T Consensus       187 ~~v~~~~~~m~~~--~~~v~~~~~~~~~~~~m~~~~~~~~pVvd~~~~~~Giit~~dl~~~~~~~~~~~~~~~v~~~m~~  264 (323)
T 3t4n_C          187 IPIGDLNIITQDN--MKSCQMTTPVIDVIQMLTQGRVSSVPIIDENGYLINVYEAYDVLGLIKGGIYNDLSLSVGEALMR  264 (323)
T ss_dssp             SBGGGTTCSBCTT--CCCBCTTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEETTHHHHHHHTTHHHHTTSBHHHHGGG
T ss_pred             CcHHHcCCCCCCC--cEEECCCCcHHHHHHHHHHcCCCEEEEECCCCeEEEEEeHHHHHHHHhhchhhhccCCHHHHHhh
Confidence            367788   7665  56999999999999999999999999999889999999999999987642212235689999987


Q ss_pred             ------CCeeeCCCccHHHHHHHhcCCCCCccEeEEEeCCCcEEEEEehhhHhhc
Q 019775          286 ------SPRTIGPDAMAVEAMQKMESPPSPVQFLPVINRQNILIGIVTLHGLVSA  334 (336)
Q Consensus       286 ------~~~~v~~~~~l~~~~~~~~~~~~~~~~l~Vv~~~~~~iGiit~~di~~~  334 (336)
                            ++.++.+++++.++++.|.++  +.+.+||+|++|+++|+||..||+++
T Consensus       265 ~~~~~~~~~~v~~~~~l~~~~~~m~~~--~~~~l~Vvd~~~~l~Giit~~Dil~~  317 (323)
T 3t4n_C          265 RSDDFEGVYTCTKNDKLSTIMDNIRKA--RVHRFFVVDDVGRLVGVLTLSDILKY  317 (323)
T ss_dssp             SCTTCCCCEEECTTCBHHHHHHHHHHS--CCCEEEEECTTSBEEEEEEHHHHHHH
T ss_pred             ccccCCCCEEECCCCCHHHHHHHHHHh--CCCEEEEECCCCcEEEEEEHHHHHHH
Confidence                  788999999999999999999  99999999988999999999999874

>2d4z_A Chloride channel protein; CLC chloride channel cytoplasmic domain, CBS domains, ION CH regulatory subunit, transport protein; 3.10A {Torpedo marmorata} SCOP: d.37.1.1

Probab=99.64  E-value=4.2e-16  Score=134.36  Aligned_cols=123  Identities=15%  Similarity=0.151  Sum_probs=102.4

Q ss_pred             hhhhhhhccccCCCCccccCCCcHHHHHHHHHhcCcceEEEEcCC--CcEEEEeeHHHHHHHHHhc----CC---c----
Q 019775          207 LIFKVQDVMKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEE--YHLIGTFTDGDLRRTLKAS----GE---G----  273 (336)
Q Consensus       207 ~~~~v~~im~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~--~~~~G~it~~dl~~~~~~~----~~---~----  273 (336)
                      ..++|+++|.++  ++++.+++++.++.++|.+++++++||+|++  ++++|+|+++||+..+...    ..   .    
T Consensus        11 ~~~~v~diMt~~--vvtv~~~~tv~~~~~lm~~~~~~~~PVVd~~~~~~LvGiIt~~dl~~~l~~~~~~~~~~~~~~~~~   88 (250)
T 2d4z_A           11 YNIQVGDIMVRD--VTSIASTSTYGDLLHVLRQTKLKFFPFVDTPDTNTLLGSIDRTEVEGLLQRRISAYRRQPAAAAEA   88 (250)
T ss_dssp             SSCBTTSSSBSS--CCCEETTCBHHHHHHHHHHCCCSEEEEESCTTTCBEEEEEEHHHHHHHHHHHHHTTSSSCCCCCCB
T ss_pred             CCCChHHhcCCC--CeEECCCCCHHHHHHHHHhcCCCEEEEEecCCCCeEEEEEEHHHHHHHHHHhhhhhhhhhhhhhcc
Confidence            356899999987  6699999999999999999999999999964  6899999999999765421    00   0    


Q ss_pred             ----------------------h---------------------------------------------------------
Q 019775          274 ----------------------I---------------------------------------------------------  274 (336)
Q Consensus       274 ----------------------~---------------------------------------------------------  274 (336)
                                            .                                                         
T Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (250)
T 2d4z_A           89 DEEGRNGETGASFTGEAESSFAYIDQEDAEGQQREGLEAVKVQTEDPRPPSPVPAEEPTQTSGIYQKKQKGTGQVASRFE  168 (250)
T ss_dssp             CCC---------------------------------------------------------------------------CC
T ss_pred             cccccccccccccccCCcceeeeccccccccccccCccccCCcccCCccccccccccccccccccccccccccccCcccc
Confidence                                  0                                                         


Q ss_pred             ---------------hhhhH--h-hhcCCCCeeeCCCccHHHHHHHhcCCCCCccEeEEEeCCCcEEEEEehhhHhhc
Q 019775          275 ---------------FKLTV--G-EMCNRSPRTIGPDAMAVEAMQKMESPPSPVQFLPVINRQNILIGIVTLHGLVSA  334 (336)
Q Consensus       275 ---------------~~~~i--~-~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~l~Vv~~~~~~iGiit~~di~~~  334 (336)
                                     ...++  . .+|++.|+.|.+++++.++..+|...  +++++||++. |+++|+||++||+++
T Consensus       169 ~~i~~~~~~~~~~~~l~~~Vdl~~~~md~sP~tv~~~tsL~~v~~LF~~l--glr~l~V~~~-GrLVGIVTrkDl~ka  243 (250)
T 2d4z_A          169 EMLTLEEIYRWEQREKNVVVNFETCRIDQSPFQLVEGTSLQKTHTLFSLL--GLDRAYVTSM-GKLVGVVALAEIQAA  243 (250)
T ss_dssp             SCCBHHHHHHHHHHHTTCBCCTTSSCEECCSCCBCTTCBHHHHHHHHHHH--TCSEEEEEET-TEEEEEEEHHHHHHH
T ss_pred             cccChhhhhhHHHHhcCceeccccccccCCCeEECCCCcHHHHHHHHHHh--CCeEEEEEEC-CEEEEEEEHHHHHHH
Confidence                           00111  1 25888999999999999999999999  9999999986 999999999999975

>2oux_A Magnesium transporter; 10001B, structural genomics, PSI-2, P structure initiative, nysgxrc; 2.16A {Enterococcus faecalis} SCOP: a.118.26.1 d.37.1.1

Probab=99.64  E-value=3.2e-16  Score=138.57  Aligned_cols=116  Identities=16%  Similarity=0.220  Sum_probs=104.9

Q ss_pred             hhhhhhccccCCCCccccCCCcHHHHHHHHHhc-----CcceEEEEcCCCcEEEEeeHHHHHHHHHhcCCchhhhhHhhh
Q 019775          208 IFKVQDVMKPQKELPVCKEGDLIMDQLVELTSK-----GCGCLLVIDEEYHLIGTFTDGDLRRTLKASGEGIFKLTVGEM  282 (336)
Q Consensus       208 ~~~v~~im~~~~~~~~~~~~~~v~~~~~~~~~~-----~~~~ipVvd~~~~~~G~it~~dl~~~~~~~~~~~~~~~i~~~  282 (336)
                      ..+|+++|.+.  +++++++.++.++++.|.++     +++.+||+|++|+++|+||.+|+....       ...++.++
T Consensus       136 ~~~v~~iM~~~--~~~v~~~~tv~ea~~~~~~~~~~~~~~~~~pVvd~~~~lvGivt~~dll~~~-------~~~~v~~i  206 (286)
T 2oux_A          136 DETAGAIMTTE--FVSIVANQTVRSAMYVLKNQADMAETIYYVYVVDQENHLVGVISLRDLIVND-------DDTLIADI  206 (286)
T ss_dssp             TTBHHHHCBSC--CCEECSSSBHHHHHHHHHHHCSSCSCCSEEEEECTTCBEEEEEEHHHHTTSC-------TTSBHHHH
T ss_pred             hHHHHHhCCCC--ceEECCCCcHHHHHHHHHHcccCccceeEEEEEcCCCeEEEEEEHHHHHcCC-------CCCcHHHH
Confidence            45889999986  56999999999999999987     788899999889999999999987531       25789999


Q ss_pred             cCCCCeeeCCCccHHHHHHHhcCCCCCccEeEEEeCCCcEEEEEehhhHhhc
Q 019775          283 CNRSPRTIGPDAMAVEAMQKMESPPSPVQFLPVINRQNILIGIVTLHGLVSA  334 (336)
Q Consensus       283 ~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~l~Vv~~~~~~iGiit~~di~~~  334 (336)
                      |.+++.++.+++++.++++.|.++  +...+||+|++|+++|+||..||++.
T Consensus       207 m~~~~~~v~~~~~l~ea~~~m~~~--~~~~lpVVd~~g~lvGiIT~~Dil~~  256 (286)
T 2oux_A          207 LNERVISVHVGDDQEDVAQTIRDY--DFLAVPVTDYDDHLLGIVTVDDIIDV  256 (286)
T ss_dssp             SBSCCCCEETTSBHHHHHHHHHHH--TCSEEEEECTTCBEEEEEEHHHHHHH
T ss_pred             cCCCCeeecCCCCHHHHHHHHHHc--CCcEEEEEcCCCeEEEEEEHHHHHHH
Confidence            999999999999999999999999  89999999988999999999999863

>3ddj_A CBS domain-containing protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.80A {Sulfolobus solfataricus} SCOP: d.37.1.1 d.37.1.1

Probab=99.64  E-value=1.1e-15  Score=135.72  Aligned_cols=121  Identities=20%  Similarity=0.213  Sum_probs=107.4

Q ss_pred             hhhhccccCCCCccccCCCcHHHHHHHHHhcCcceEEEEcCCCcEEEEeeHHHHHHHHHhcCC-----chhhhhHhhhcC
Q 019775          210 KVQDVMKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRRTLKASGE-----GIFKLTVGEMCN  284 (336)
Q Consensus       210 ~v~~im~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~it~~dl~~~~~~~~~-----~~~~~~i~~~~~  284 (336)
                      +++++|.+.  ++++++++++.++++.|.+++++.+||+|++|+++|++|.+|++..+.....     .....++.++|.
T Consensus       157 ~v~~~m~~~--~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~v~~~m~  234 (296)
T 3ddj_A          157 PVKVFMSTK--VQTIYKEVRLDQAVKLMLRRGFRRLPVIDDDNKVVGIVTVVNAIKQLAKAVDKLDPDYFYGKVVKDVMV  234 (296)
T ss_dssp             BHHHHSBCS--CCCEETTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHHHHHHHTCTHHHHTCBHHHHSB
T ss_pred             cHHHhhcCC--CeEECCCCCHHHHHHHHHHcCCCEEEEEcCCCEEEEEEEHHHHHHHHHHHHhhcChhhhcCcCHHHHhC
Confidence            788999876  5589999999999999999999999999989999999999999987753110     112468999999


Q ss_pred             CCCeeeCCCccHHHHHHHhcCCCCCccEeEEEeCCCcEEEEEehhhHhhc
Q 019775          285 RSPRTIGPDAMAVEAMQKMESPPSPVQFLPVINRQNILIGIVTLHGLVSA  334 (336)
Q Consensus       285 ~~~~~v~~~~~l~~~~~~~~~~~~~~~~l~Vv~~~~~~iGiit~~di~~~  334 (336)
                      +++.++.+++++.++++.|.++  +.+.+||+|++|+++|+||+.||+++
T Consensus       235 ~~~~~v~~~~~l~~a~~~m~~~--~~~~l~Vvd~~g~~~Giit~~Dil~~  282 (296)
T 3ddj_A          235 TNLVTIDELASVNRAAAEMIVK--RIGSLLILNKDNTIRGIITERDLLIA  282 (296)
T ss_dssp             CCCCBCCTTSBHHHHHHHHHHH--TCSEEEEECTTSCEEEEEEHHHHHHH
T ss_pred             CCCeEECCCCcHHHHHHHHHHc--CCCEEEEECCCCeEEEEEcHHHHHHH
Confidence            9999999999999999999999  89999999988999999999999874

>2yvy_A MGTE, Mg2+ transporter MGTE; membrane protein, transport protein; 2.30A {Thermus thermophilus} PDB: 2yvz_A

Probab=99.63  E-value=9.9e-16  Score=134.93  Aligned_cols=115  Identities=23%  Similarity=0.300  Sum_probs=103.7

Q ss_pred             hhhhhccccCCCCccccCCCcHHHHHHHHHhc-----CcceEEEEcCCCcEEEEeeHHHHHHHHHhcCCchhhhhHhhhc
Q 019775          209 FKVQDVMKPQKELPVCKEGDLIMDQLVELTSK-----GCGCLLVIDEEYHLIGTFTDGDLRRTLKASGEGIFKLTVGEMC  283 (336)
Q Consensus       209 ~~v~~im~~~~~~~~~~~~~~v~~~~~~~~~~-----~~~~ipVvd~~~~~~G~it~~dl~~~~~~~~~~~~~~~i~~~~  283 (336)
                      .+++++|.+.  ++++.++.++.++++.|.++     ++..+||+|++|+++|+||.+|++..    .   ...++.++|
T Consensus       135 ~~v~~iM~~~--~~~v~~~~tv~ea~~~~~~~~~~~~~~~~~~Vvd~~~~lvGivt~~dll~~----~---~~~~v~~im  205 (278)
T 2yvy_A          135 DEAGGLMTPE--YVAVREGMTVEEVLRFLRRAAPDAETIYYIYVVDEKGRLKGVLSLRDLIVA----D---PRTRVAEIM  205 (278)
T ss_dssp             TBGGGTCBSC--CCEECTTSBHHHHHHHHHHHTTTCSCSSEEEEECTTCBEEEEEEHHHHHHS----C---TTCBSTTTS
T ss_pred             chHHhhcCCC--ceEECCCCcHHHHHHHHHHccCCccceeEEEEECCCCCEEEEEEHHHHhcC----C---CCCcHHHHh
Confidence            3678999986  66999999999999999987     68999999988999999999999853    1   256899999


Q ss_pred             CCCCeeeCCCccHHHHHHHhcCCCCCccEeEEEeCCCcEEEEEehhhHhhc
Q 019775          284 NRSPRTIGPDAMAVEAMQKMESPPSPVQFLPVINRQNILIGIVTLHGLVSA  334 (336)
Q Consensus       284 ~~~~~~v~~~~~l~~~~~~~~~~~~~~~~l~Vv~~~~~~iGiit~~di~~~  334 (336)
                      .+++.++++++++.++++.|.++  +...+||+|++|+++|+||..||++.
T Consensus       206 ~~~~~~v~~~~~l~~a~~~m~~~--~~~~lpVvd~~g~lvGivT~~Dil~~  254 (278)
T 2yvy_A          206 NPKVVYVRTDTDQEEVARLMADY--DFTVLPVVDEEGRLVGIVTVDDVLDV  254 (278)
T ss_dssp             BSSCCCEETTSBHHHHHHHHHHH--TCSEEEEECTTSBEEEEEEHHHHHHH
T ss_pred             CCCCeEEeCCCCHHHHHHHHHhc--CCCEEEEEeCCCeEEEEEEHHHHHHH
Confidence            88999999999999999999999  89999999988999999999999864

>3org_A CMCLC; transporter, transport protein; 3.50A {Cyanidioschyzon merolae}

Probab=99.63  E-value=2.2e-16  Score=154.02  Aligned_cols=125  Identities=15%  Similarity=0.102  Sum_probs=105.3

Q ss_pred             hhhhhhhccccCCCCccccCCCcHHHHHHHHH-hcCcceEEEEcCCCcEEEEeeHHHHHHHHHhcCCc------------
Q 019775          207 LIFKVQDVMKPQKELPVCKEGDLIMDQLVELT-SKGCGCLLVIDEEYHLIGTFTDGDLRRTLKASGEG------------  273 (336)
Q Consensus       207 ~~~~v~~im~~~~~~~~~~~~~~v~~~~~~~~-~~~~~~ipVvd~~~~~~G~it~~dl~~~~~~~~~~------------  273 (336)
                      ..++|+|+|.|..++++++++++++|+.+.|. +++++.+||+|++++++|+|+++||+..+......            
T Consensus       451 ~~~~V~diM~p~~~v~~v~~~~t~~e~~~~~~~~~~~~~~PVvd~~~~lvGiVt~~DL~~~l~~~~~~~~~~~~~~~~~~  530 (632)
T 3org_A          451 PEMTAREIMHPIEGEPHLFPDSEPQHIKGILEKFPNRLVFPVIDANGYLLGAISRKEIVDRLQHVLEDVPEPIAGHRTLV  530 (632)
T ss_dssp             TTSBHHHHCBCTTTSCCBCSSSCHHHHHHHHHHSTTCCEECBBCTTCBBCCEESHHHHTTTTTTC---------------
T ss_pred             ccCcHHHHhhcCCCceEecCCCcHHHHHHHHHhcCCcceEEEEecCCeEEEEEEHHHHHHHHHHHhhhccccccccccee
Confidence            46799999996555779999999999999999 79999999999889999999999999765432100            


Q ss_pred             ----------------------------------hhhhhHhhhcCCCCeeeCCCccHHHHHHHhcCCCCCccEeEEEeCC
Q 019775          274 ----------------------------------IFKLTVGEMCNRSPRTIGPDAMAVEAMQKMESPPSPVQFLPVINRQ  319 (336)
Q Consensus       274 ----------------------------------~~~~~i~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~l~Vv~~~  319 (336)
                                                        ....++.++|.++|.++++++++.++++.|.++  +.+.+||+ ++
T Consensus       531 ~~~~~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~v~~iMt~~pitV~~~~~l~ea~~~M~~~--~i~~lpVv-e~  607 (632)
T 3org_A          531 LLDAADLSENIEGLVDETPSGEHSSKGKRTATVLEPTSSLVVPCDVSPIVVTSYSLVRQLHFLFVML--MPSMIYVT-ER  607 (632)
T ss_dssp             ----------------------------------------CCSCCCCCCEEETTCBHHHHHHHHHHT--CCSEEEEE-ET
T ss_pred             ccCHHHHHhhcccCCCCCcccchhhhcccceEeeccccccchhhcCCCceecCCCcHHHHHHHHHhc--CCCEEEEE-EC
Confidence                                              000137789999999999999999999999999  99999999 66


Q ss_pred             CcEEEEEehhhHhhc
Q 019775          320 NILIGIVTLHGLVSA  334 (336)
Q Consensus       320 ~~~iGiit~~di~~~  334 (336)
                      |+++|+||++||+++
T Consensus       608 G~lvGIVT~~Dll~~  622 (632)
T 3org_A          608 GKLVGIVEREDVAYG  622 (632)
T ss_dssp             TEEEEEEEGGGTEEC
T ss_pred             CEEEEEEehhhHHHH
Confidence            999999999999875

>2qrd_G Protein C1556.08C; AMPK, ADP, ATP-binding, kinase, nucleotide-binding, serine/T protein kinase, transferase, CBS domain; HET: ADP ATP; 2.41A {Schizosaccharomyces pombe} PDB: 2qrc_G* 2qr1_G* 2qre_G* 2oox_G* 2ooy_G*

Probab=99.61  E-value=6.3e-15  Score=133.14  Aligned_cols=121  Identities=16%  Similarity=0.208  Sum_probs=105.6

Q ss_pred             hhhh---ccccCCCCccccCCCcHHHHHHHHHhcCcceEEEEcCCCcEEEEeeHHHHHHHHHhcCCchhhhhHhhhcCC-
Q 019775          210 KVQD---VMKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRRTLKASGEGIFKLTVGEMCNR-  285 (336)
Q Consensus       210 ~v~~---im~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~it~~dl~~~~~~~~~~~~~~~i~~~~~~-  285 (336)
                      ++++   +|.+.  +++++++.++.++++.|.+++++.+||+|++|+++|+||.+|++..+..........++.++|.+ 
T Consensus       183 ~v~~l~~~m~~~--~~~v~~~~~~~~~~~~m~~~~~~~~~Vvd~~~~~~Giit~~dl~~~~~~~~~~~~~~~v~~~m~~~  260 (334)
T 2qrd_G          183 PLNQMTIGTWSN--LATASMETKVYDVIKMLAEKNISAVPIVNSEGTLLNVYESVDVMHLIQDGDYSNLDLSVGEALLKR  260 (334)
T ss_dssp             BGGGSSCSBCSS--CCCBCTTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEETHHHHHHHTTSCGGGGGSBHHHHHTTC
T ss_pred             cHHHhCCcccCC--ceEECCCCcHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEHHHHHHHhhccccccccCcHHHHHhcc
Confidence            5677   47765  55899999999999999999999999999889999999999999887653222335789999984 


Q ss_pred             -----CCeeeCCCccHHHHHHHhcCCCCCccEeEEEeCCCcEEEEEehhhHhhc
Q 019775          286 -----SPRTIGPDAMAVEAMQKMESPPSPVQFLPVINRQNILIGIVTLHGLVSA  334 (336)
Q Consensus       286 -----~~~~v~~~~~l~~~~~~~~~~~~~~~~l~Vv~~~~~~iGiit~~di~~~  334 (336)
                           ++.++.+++++.++++.|.++  +.+.+||+|++|+++|+||+.||+++
T Consensus       261 ~~~~~~~~~v~~~~~l~~~~~~m~~~--~~~~l~Vvd~~g~l~Giit~~dil~~  312 (334)
T 2qrd_G          261 PANFDGVHTCRATDRLDGIFDAIKHS--RVHRLFVVDENLKLEGILSLADILNY  312 (334)
T ss_dssp             CTTCCCCCEECTTCBHHHHHHHHHHS--CCCEEEEECTTCBEEEEEEHHHHHHH
T ss_pred             cccCCCCEEECCCCcHHHHHHHHHHc--CCCEEEEECCCCeEEEEEeHHHHHHH
Confidence                 788999999999999999999  99999999988999999999999864

>3kh5_A Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, archaea, unknown function; HET: ADP AMP; 2.10A {Methanocaldococcus jannaschii} PDB: 3lfz_A*

Probab=99.61  E-value=3.7e-15  Score=130.96  Aligned_cols=120  Identities=20%  Similarity=0.272  Sum_probs=105.5

Q ss_pred             hhhhccccCCCCccccCCCcHHHHHHHHHhcCcceEEEEcCCCcEEEEeeHHHHHHHHHhcC----------CchhhhhH
Q 019775          210 KVQDVMKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRRTLKASG----------EGIFKLTV  279 (336)
Q Consensus       210 ~v~~im~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~it~~dl~~~~~~~~----------~~~~~~~i  279 (336)
                      +++++|.+.  +++++++.++.++++.|.+++++.+||+ ++|+++|+||.+|++..+....          ......++
T Consensus       149 ~v~~~m~~~--~~~v~~~~~l~~~~~~~~~~~~~~~~Vv-~~~~~~Givt~~dl~~~~~~~~~~~~~~~~~~~~~~~~~v  225 (280)
T 3kh5_A          149 VIDDYITRD--VIVATPGERLKDVARTMVRNGFRRLPVV-SEGRLVGIITSTDFIKLLGSDWAFNHMQTGNVREITNVRM  225 (280)
T ss_dssp             BSGGGCBCS--CCCBCTTCBHHHHHHHHHHHTCSEEEEE-ETTEEEEEEEHHHHHHHHTSHHHHHHHHSCCTHHHHHCBH
T ss_pred             CHHHHhCCC--CeEECCCCcHHHHHHHHHHcCCCEEEEE-ECCEEEEEEEHHHHHHHHhhhhhhhhhcccchhhhhCCcH
Confidence            678899876  4589999999999999999999999999 5889999999999998774211          01135679


Q ss_pred             hhhcCCCCeeeCCCccHHHHHHHhcCCCCCccEeEEEeCCCcEEEEEehhhHhhc
Q 019775          280 GEMCNRSPRTIGPDAMAVEAMQKMESPPSPVQFLPVINRQNILIGIVTLHGLVSA  334 (336)
Q Consensus       280 ~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~l~Vv~~~~~~iGiit~~di~~~  334 (336)
                      .++|.+++.++.+++++.++++.|.++  +.+.+||+|++|+++|+||+.||+++
T Consensus       226 ~~~m~~~~~~v~~~~~l~~a~~~m~~~--~~~~l~Vvd~~g~~~Givt~~dil~~  278 (280)
T 3kh5_A          226 EEIMKRDVITAKEGDKLKKIAEIMVTN--DIGALPVVDENLRIKGIITEKDVLKY  278 (280)
T ss_dssp             HHHSBSSCCCBCTTCBHHHHHHHHHHH--TCCEEEEECTTCBEEEEEEHHHHGGG
T ss_pred             HHHhcCCCEEECCCCCHHHHHHHHHHC--CCCEEEEECCCCeEEEEEeHHHHHHh
Confidence            999999999999999999999999999  99999999998899999999999975

>2yzq_A Putative uncharacterized protein PH1780; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; HET: SAM; 1.63A {Pyrococcus horikoshii} SCOP: d.37.1.1 d.37.1.1

Probab=99.60  E-value=2e-15  Score=132.96  Aligned_cols=123  Identities=24%  Similarity=0.306  Sum_probs=103.8

Q ss_pred             hhhhhhccccCCCCccccCCCcHHHHHHHHHhcCcceEEEEcCCCcEEEEeeHHHHH------HHHH------hc-----
Q 019775          208 IFKVQDVMKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLR------RTLK------AS-----  270 (336)
Q Consensus       208 ~~~v~~im~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~it~~dl~------~~~~------~~-----  270 (336)
                      ..+++++|.+.  +++++++.++.++.+.|.+++.+.+||+|++|+++|+++..|++      ..+.      ..     
T Consensus       125 ~~~v~~~m~~~--~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~~~~~Giit~~dl~~~~~~~~~~~~~~~~~~~~~~~~  202 (282)
T 2yzq_A          125 GVEIEPYYQRY--VSIVWEGTPLKAALKALLLSNSMALPVVDSEGNLVGIVDETDLLRDSEIVRIMKSTELAASSEEEWI  202 (282)
T ss_dssp             GCBSTTTSBSC--CCCEETTSBHHHHHHHHHTCSSSEEEEECTTSCEEEEEEGGGGGGCGGGCC----------------
T ss_pred             cCcHHHHhCCC--CEEECCCCCHHHHHHHHHHcCCcEEEEEcCCCeEEEEEEHHHHhhhhhhhhhhccchhhhhhhhhhh
Confidence            34678899766  45899999999999999999999999999889999999999998      4332      00     


Q ss_pred             ------------CCchhhhhHhhhcCCCCeeeCCCccHHHHHHHhcCCCCCccEeEEEeCCCcEEEEEehhhHhhc
Q 019775          271 ------------GEGIFKLTVGEMCNRSPRTIGPDAMAVEAMQKMESPPSPVQFLPVINRQNILIGIVTLHGLVSA  334 (336)
Q Consensus       271 ------------~~~~~~~~i~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~l~Vv~~~~~~iGiit~~di~~~  334 (336)
                                  .......++.++|.+++.++.+++++.++++.|.++  +.+.+||+|++|+++|+||+.||+++
T Consensus       203 ~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~--~~~~lpVvd~~~~lvGiit~~Dil~~  276 (282)
T 2yzq_A          203 LESHPTLLFEKFELQLPNKPVAEIMTRDVIVATPHMTVHEVALKMAKY--SIEQLPVIRGEGDLIGLIRDFDLLKV  276 (282)
T ss_dssp             ----------------CCCBGGGTCBSSCCCBCTTSBHHHHHHHHHHH--TCSEEEEEETTTEEEEEEEHHHHGGG
T ss_pred             cccchHHHHhHhhhhhccCCHHHhcCCCCceeCCCCCHHHHHHHHHHc--CcceeEEECCCCCEEEEEeHHHHHHH
Confidence                        001124678999999999999999999999999999  99999999987899999999999875

>3kh5_A Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, archaea, unknown function; HET: ADP AMP; 2.10A {Methanocaldococcus jannaschii} PDB: 3lfz_A*

Probab=99.60  E-value=8.3e-15  Score=128.73  Aligned_cols=125  Identities=19%  Similarity=0.276  Sum_probs=109.1

Q ss_pred             hhhhhhhhhhhccccCCCCccccCCCcHHHHHHHHHhcCcceEEEEcCCCcEEEEeeHHHHHHHHHhcCCchhhhhHhhh
Q 019775          203 IGKSLIFKVQDVMKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRRTLKASGEGIFKLTVGEM  282 (336)
Q Consensus       203 ~~~~~~~~v~~im~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~it~~dl~~~~~~~~~~~~~~~i~~~  282 (336)
                      +......+++++|.++  +++++++.++.++++.|.+++++.+||+|++|+++|++|.+|+...+.....  ...++.++
T Consensus        78 ~~~~~~~~v~~im~~~--~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~~~--~~~~v~~~  153 (280)
T 3kh5_A           78 FLAAINEPVREIMEEN--VITLKENADIDEAIETFLTKNVGGAPIVNDENQLISLITERDVIRALLDKID--ENEVIDDY  153 (280)
T ss_dssp             HHHHTTSBGGGTSBCS--CCCEETTCBHHHHHHHHHHTTCSEEEEECTTCBEEEEEEHHHHHHHHGGGSC--TTCBSGGG
T ss_pred             hhHHhhhhHHHhcCCC--CEEECCCCCHHHHHHHHHhCCCCEEEEEcCCCEEEEEEEHHHHHHHHhhcCC--CCCCHHHH
Confidence            3333356899999986  5699999999999999999999999999989999999999999988765332  23478999


Q ss_pred             cCCCCeeeCCCccHHHHHHHhcCCCCCccEeEEEeCCCcEEEEEehhhHhhc
Q 019775          283 CNRSPRTIGPDAMAVEAMQKMESPPSPVQFLPVINRQNILIGIVTLHGLVSA  334 (336)
Q Consensus       283 ~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~l~Vv~~~~~~iGiit~~di~~~  334 (336)
                      |.+++.++.+++++.++++.|.++  +...+||+ ++|+++|+||..|+++.
T Consensus       154 m~~~~~~v~~~~~l~~~~~~~~~~--~~~~~~Vv-~~~~~~Givt~~dl~~~  202 (280)
T 3kh5_A          154 ITRDVIVATPGERLKDVARTMVRN--GFRRLPVV-SEGRLVGIITSTDFIKL  202 (280)
T ss_dssp             CBCSCCCBCTTCBHHHHHHHHHHH--TCSEEEEE-ETTEEEEEEEHHHHHHH
T ss_pred             hCCCCeEECCCCcHHHHHHHHHHc--CCCEEEEE-ECCEEEEEEEHHHHHHH
Confidence            999999999999999999999999  89999999 55999999999999864

>3ddj_A CBS domain-containing protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.80A {Sulfolobus solfataricus} SCOP: d.37.1.1 d.37.1.1

Probab=99.60  E-value=1.5e-15  Score=134.83  Aligned_cols=135  Identities=18%  Similarity=0.218  Sum_probs=111.1

Q ss_pred             HHhhcCCCCchhhhhhhhhhhccccCCCCccccCCCcHHHHHHHHHhcCcceEEEEcCCCcEEEEeeHHHHHHHHHhcCC
Q 019775          193 EYAANHPAGRIGKSLIFKVQDVMKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRRTLKASGE  272 (336)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~it~~dl~~~~~~~~~  272 (336)
                      +....||.+.-..+...+|+++|.++  +++++++.++.+|++.|.+++++.+||+|  |+++|++|.+||+..+.....
T Consensus         4 ~~~~~~~~~~~~~~~~~~V~dim~~~--~~~v~~~~~v~~a~~~m~~~~~~~~~V~d--~~l~GivT~~Di~~~~~~~~~   79 (296)
T 3ddj_A            4 DKIHHHHHHENLYFQGMNIETLMIKN--PPILSKEDRLGSAFKKINEGGIGRIIVAN--EKIEGLLTTRDLLSTVESYCK   79 (296)
T ss_dssp             ----------CCTTCCSSGGGTCEES--CCEECTTSBHHHHHHHTTGGGCCEEEEES--SSEEEEEEHHHHHGGGTTCC-
T ss_pred             cccccchhhhhhhhcccCHHHhccCC--CcEECCCccHHHHHHHHHHCCCceEEEEC--CeEEEEEeHHHHHHHhccccc
Confidence            34566788888888888999999986  56999999999999999999999999998  899999999999987642110


Q ss_pred             ---------chhhhhHhhhcCCCCeeeCCCccHHHHHHHhcCCCCCccEeEEEeCCCcEEEEEehhhHhh
Q 019775          273 ---------GIFKLTVGEMCNRSPRTIGPDAMAVEAMQKMESPPSPVQFLPVINRQNILIGIVTLHGLVS  333 (336)
Q Consensus       273 ---------~~~~~~i~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~l~Vv~~~~~~iGiit~~di~~  333 (336)
                               .....++.++|.+++.++.+++++.++++.|.++  +...+||+|++|+++|++|..|+++
T Consensus        80 ~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~~~~a~~~m~~~--~~~~lpVvd~~~~lvGivt~~dl~~  147 (296)
T 3ddj_A           80 DSCSQGDLYHISTTPIIDYMTPNPVTVYNTSDEFTAINIMVTR--NFGSLPVVDINDKPVGIVTEREFLL  147 (296)
T ss_dssp             --CCHHHHHHHHTSBGGGTSEESCCCEETTSCHHHHHHHHHHH--TCSEEEEECTTSCEEEEEEHHHHGG
T ss_pred             ccccchhhHHHhcccHHHhccCCCEEEcCCCCHHHHHHHHHHc--CCCEEEEEcCCCcEEEEEeHHHHHH
Confidence                     1124678999999999999999999999999999  8999999998899999999999986

>3jx9_A Putative phosphoheptose isomerase; YP_001815198.1, structura genomics, joint center for structural genomics, JCSG; HET: MSE; 1.95A {Exiguobacterium sibiricum 255-15}

Probab=99.58  E-value=3.6e-14  Score=113.79  Aligned_cols=157  Identities=10%  Similarity=0.067  Sum_probs=110.7

Q ss_pred             HHHHHHHHHHHHHHHhcCChhHHHHHHHHHHcC---CCeEEEEeccchHHHHHHHHHHHHhcCCeeeecCCccccccccC
Q 019775           21 LDLFKSQQDHLNYFFQHLSLPHTLTFTQTLLKC---RGTIFFTGVGKSGFVANKISQTLISLGIKSGFLNPLDALHGDIG   97 (336)
Q Consensus        21 ~~~~~~~~~~l~~~~~~~~~~~i~~~~~~i~~a---~~~I~i~G~G~s~~~a~~~~~~l~~~g~~~~~~~~~~~~~~~~~   97 (336)
                      .+++..++..+-+..+.... .|+++++++.+|   +++||+||+|.|..++.++.++-.++-.......        ..
T Consensus         3 ~kI~~tql~~ll~~i~~~e~-~I~~AA~llaqai~~~g~IyvfG~Ghs~~~~~e~~~~~e~l~~~~~~~~--------~~   73 (170)
T 3jx9_A            3 LKILATQFNGKLQTLTKQED-ELFDVVRLLAQALVGQGKVYLDAYGEFEGLYPMLSDGPDQMKRVTKIKD--------HK   73 (170)
T ss_dssp             HHHHHHHHHHHHHHHGGGHH-HHHHHHHHHHHHHHTTCCEEEEECGGGGGGTHHHHTSTTCCTTEEECCT--------TC
T ss_pred             HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhCCCEEEEECCCcHHHHHHHHHcccCCccchhhhhh--------cC
Confidence            34556666666555555555 899999998766   2499999999999999988776544422221111        23


Q ss_pred             CCCCCcEEEEEeCCCCcHHHHHHHHHHHHcCCeEEEEeC-CCCCcc-ccccCEEEEcCCCcccC-CCCCCChhHHHHHHH
Q 019775           98 ILSSDDILVMFSKSGNTEELLKVVPCAKAKGAYLVSVTS-VEGNAL-AAVCDMNVHLPVERELC-PFDLAPVTSTAIQMV  174 (336)
Q Consensus        98 ~~~~~dlvi~iS~sG~~~~~~~~~~~ak~~g~~vi~IT~-~~~s~l-~~~ad~~i~~~~~~~~~-~~~~~~~~s~~~~~~  174 (336)
                      .++++|++|++|.||.++..+++++.+|++|+++|+||+ ...... .+++|++..+|.+--.. ........|.++..|
T Consensus        74 ~i~~~D~vii~S~Sg~n~~~ie~A~~ake~G~~vIaITs~~~~~~~~~~L~d~an~~p~gll~~e~g~r~g~~Sti~~~~  153 (170)
T 3jx9_A           74 TLHAVDRVLIFTPDTERSDLLASLARYDAWHTPYSIITLGDVTETLERSIAPLALKFDKGLLPAEDGSRHGLPSLALGAF  153 (170)
T ss_dssp             CCCTTCEEEEEESCSCCHHHHHHHHHHHHHTCCEEEEESSCCCTTGGGSSSCEECCCCSCSEECTTSCEECCCHHHHHHH
T ss_pred             CCCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCcEEEEeCcchhccccCcHHHHHhCCCCCceECCCCCEechhHHHHHHH
Confidence            788999999999999999999999999999999999999 333332 46778773333331100 111233567778888


Q ss_pred             HHHHHHHHHHhh
Q 019775          175 FGDTVAIAMMGA  186 (336)
Q Consensus       175 l~d~l~~~~~~~  186 (336)
                      +.+.|+..+.+.
T Consensus       154 i~~~i~~~~~e~  165 (170)
T 3jx9_A          154 LLTHILTQLQEM  165 (170)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            888888877654

>1tzb_A Glucose-6-phosphate isomerase, conjectural; enzyme, crenarchaeon, hyperthermophIle, PGI family; 1.16A {Pyrobaculum aerophilum} SCOP: c.80.1.1 PDB: 1tzc_A* 1x9h_A* 1x9i_A*

Probab=99.58  E-value=1.8e-14  Score=128.20  Aligned_cols=114  Identities=23%  Similarity=0.233  Sum_probs=90.4

Q ss_pred             cCCCeEEEEeccchHHHHHHHHHHHHh-c-CCeeeecCCccccccccCCCCCCcEEEEEeCCCCcHHHHHHHHHHHHcCC
Q 019775           52 KCRGTIFFTGVGKSGFVANKISQTLIS-L-GIKSGFLNPLDALHGDIGILSSDDILVMFSKSGNTEELLKVVPCAKAKGA  129 (336)
Q Consensus        52 ~a~~~I~i~G~G~s~~~a~~~~~~l~~-~-g~~~~~~~~~~~~~~~~~~~~~~dlvi~iS~sG~~~~~~~~~~~ak~~g~  129 (336)
                      ++ ++|+++|+|+|+.+|.++++.|.. . |+++....+...       .+++|++|+||+||+|++++++++.||++|+
T Consensus        36 ~~-~~I~i~G~G~S~~~a~~~~~~l~~~~~~~~~~~~~~~~~-------~~~~dlvI~iS~SG~T~e~~~a~~~ak~~g~  107 (302)
T 1tzb_A           36 AM-PRLYISGMGGSGVVADLIRDFSLTWNWEVEVIAVKDYFL-------KARDGLLIAVSYSGNTIETLYTVEYAKRRRI  107 (302)
T ss_dssp             CC-SEEEEECCHHHHHHHHHHHHHHHHTTCSSEEEEECSSCC-------CCSSSEEEEECSSSCCHHHHHHHHHHHHTTC
T ss_pred             CC-CEEEEEEecHHHHHHHHHHHHHHhhcCCceEEEeCCcCC-------CCCCCEEEEEeCCCCCHHHHHHHHHHHHCCC
Confidence            46 699999999999999999999975 6 888888876644       2799999999999999999999999999999


Q ss_pred             eEEEEeCCCCCccccccCEEEEcCCCcccCCCCCCChhHHHHHHHHHHHHHHH
Q 019775          130 YLVSVTSVEGNALAAVCDMNVHLPVERELCPFDLAPVTSTAIQMVFGDTVAIA  182 (336)
Q Consensus       130 ~vi~IT~~~~s~l~~~ad~~i~~~~~~~~~~~~~~~~~s~~~~~~l~d~l~~~  182 (336)
                      ++|+||++.  +++++ |+.+....+ .     .....|.++++..+-.|+..
T Consensus       108 ~~iaIT~~~--~La~~-~~~l~~~~e-~-----~a~~~s~~~~l~~~~~l~~~  151 (302)
T 1tzb_A          108 PAVAITTGG--RLAQM-GVPTVIVPK-A-----SAPRAALPQLLTAALHVVAK  151 (302)
T ss_dssp             CEEEEESST--TGGGS-SSCEEECCC-C-----SSGGGGHHHHHHHHHHHHHH
T ss_pred             eEEEECCCc--hHHHC-CeeEEeCCC-C-----CccHHHHHHHHHHHHHHHHH
Confidence            999999987  99999 888743221 1     13333666666544444333

>3pc3_A CG1753, isoform A; CBS, synthase, PLP, heme, aminoacrylate, lyase; HET: HEM P1T; 1.55A {Drosophila melanogaster} PDB: 3pc2_A* 3pc4_A*

Probab=99.58  E-value=6.7e-15  Score=140.90  Aligned_cols=120  Identities=11%  Similarity=0.146  Sum_probs=105.4

Q ss_pred             hhhhhhccccCCCCccccCC-CcHHHHHHHHHhcCcceEEEEc-CCCcEEEEeeHHHHHHHHHhcCCchhhhhHhhhcCC
Q 019775          208 IFKVQDVMKPQKELPVCKEG-DLIMDQLVELTSKGCGCLLVID-EEYHLIGTFTDGDLRRTLKASGEGIFKLTVGEMCNR  285 (336)
Q Consensus       208 ~~~v~~im~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~ipVvd-~~~~~~G~it~~dl~~~~~~~~~~~~~~~i~~~~~~  285 (336)
                      ..+|+++|.+.  ++++.++ +++.+++++|.+++++.+||+| ++++++|+||.+||+..+.... .....++.++|.+
T Consensus       383 ~~~V~diM~~~--~vtv~~~~~tv~ea~~~m~~~~~~~lpVvd~~~g~lvGiVt~~Dll~~l~~~~-~~~~~~V~~im~~  459 (527)
T 3pc3_A          383 SLAIAELELPA--PPVILKSDATVGEAIALMKKHRVDQLPVVDQDDGSVLGVVGQETLITQIVSMN-RQQSDPAIKALNK  459 (527)
T ss_dssp             TSBGGGGCCCC--CSCCEETTCBHHHHHHHHHHHTCSEEEEECTTTCCEEEEEEHHHHHHHHHHHC-CCTTSBGGGGEET
T ss_pred             CCcHHHhCcCC--CeEEcCCCCcHHHHHHHHHHcCCCeEEEEECCCCEEEEEEEHHHHHHHHHhcc-CcCCCcHHHHhcC
Confidence            46899999976  5689999 9999999999999999999999 7899999999999998876532 1235789999999


Q ss_pred             CCeeeCCCccHHHHHHHhcCCCCCccEeEEEeCC----CcEEEEEehhhHhhc
Q 019775          286 SPRTIGPDAMAVEAMQKMESPPSPVQFLPVINRQ----NILIGIVTLHGLVSA  334 (336)
Q Consensus       286 ~~~~v~~~~~l~~~~~~~~~~~~~~~~l~Vv~~~----~~~iGiit~~di~~~  334 (336)
                      ++.++.+++++.++++.|.++  +  .+||+|++    |+++|+||+.||+++
T Consensus       460 ~~~~v~~~~~l~~a~~~m~~~--~--~~pVVd~~~~~~g~lvGIVT~~Dll~~  508 (527)
T 3pc3_A          460 RVIRLNESEILGKLARVLEVD--P--SVLILGKNPAGKVELKALATKLDVTTF  508 (527)
T ss_dssp             TCCEEETTSBHHHHHHHHTTC--S--EEEEEEECSSSCEEEEEEEEHHHHHHH
T ss_pred             CCeEECCCCcHHHHHHHHhhC--C--EEEEEeCCcccCCeEEEEEEHHHHHHH
Confidence            999999999999999999776  4  47999984    899999999999874

>2zy9_A Mg2+ transporter MGTE; membrane protien, metal transport; 2.94A {Thermus thermophilus} PDB: 2yvx_A

Probab=99.54  E-value=9.3e-15  Score=137.73  Aligned_cols=116  Identities=23%  Similarity=0.289  Sum_probs=103.9

Q ss_pred             hhhhhhccccCCCCccccCCCcHHHHHHHHHhc-----CcceEEEEcCCCcEEEEeeHHHHHHHHHhcCCchhhhhHhhh
Q 019775          208 IFKVQDVMKPQKELPVCKEGDLIMDQLVELTSK-----GCGCLLVIDEEYHLIGTFTDGDLRRTLKASGEGIFKLTVGEM  282 (336)
Q Consensus       208 ~~~v~~im~~~~~~~~~~~~~~v~~~~~~~~~~-----~~~~ipVvd~~~~~~G~it~~dl~~~~~~~~~~~~~~~i~~~  282 (336)
                      ..+++++|.++  +++++++.+++++++.++++     +++.+||+|++++++|+++.+|++..    .   ...++.++
T Consensus       154 ~~~v~~iM~~~--~v~v~~~~tv~ea~~~~~~~~~~~~~~~~ipVvd~~~~lvGiVt~~Dll~~----~---~~~~v~di  224 (473)
T 2zy9_A          154 EDEAGGLMTPE--YVAVREGMTVEEVLRFLRRAAPDAETIYYIYVVDEKGRLKGVLSLRDLIVA----D---PRTRVAEI  224 (473)
T ss_dssp             TTBSTTTCBSC--EEEECTTCBHHHHHHHHHHHGGGCSEEEEEEEECTTSBEEEEEEHHHHHHS----C---TTSBGGGT
T ss_pred             CCCHHHhCCCC--ceEeCCCCcHHHHHHHHHhccCCcCceeEEEEECCCCcEEEEEEHHHHhcC----C---CCCcHHHH
Confidence            34678999986  67999999999999999986     47899999988999999999999863    1   25789999


Q ss_pred             cCCCCeeeCCCccHHHHHHHhcCCCCCccEeEEEeCCCcEEEEEehhhHhhc
Q 019775          283 CNRSPRTIGPDAMAVEAMQKMESPPSPVQFLPVINRQNILIGIVTLHGLVSA  334 (336)
Q Consensus       283 ~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~l~Vv~~~~~~iGiit~~di~~~  334 (336)
                      |.+++.+++++++++++++.|.++  +...+||+|++|+++|+||..|+++.
T Consensus       225 m~~~~~~v~~~~~l~ea~~~m~~~--~~~~lpVVDe~g~lvGiIT~~Dil~~  274 (473)
T 2zy9_A          225 MNPKVVYVRTDTDQEEVARLMADY--DFTVLPVVDEEGRLVGIVTVDDVLDV  274 (473)
T ss_dssp             SBSSCCCEESSSBHHHHHHHHHHH--TCSEEEEECTTSBEEEEEEHHHHHHH
T ss_pred             hCCCCeEEeCCCcHHHHHHHHHhc--CCcEEEEEcCCCEEEEEEehHhhHHH
Confidence            998999999999999999999999  99999999999999999999999863

>3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A*

Probab=99.53  E-value=2.7e-14  Score=135.40  Aligned_cols=129  Identities=14%  Similarity=0.213  Sum_probs=108.8

Q ss_pred             hcCCCCchhhhh-----hhhhhhccccCCCCccccCCCcHHHHHHHHHhcCcceEEEEcC--CCcEEEEeeHHHHHHHHH
Q 019775          196 ANHPAGRIGKSL-----IFKVQDVMKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVIDE--EYHLIGTFTDGDLRRTLK  268 (336)
Q Consensus       196 ~~~~~~~~~~~~-----~~~v~~im~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~--~~~~~G~it~~dl~~~~~  268 (336)
                      -.|++.+++...     .+..+++|.++  ++++++++|+.++.++|.+++++.+||+|+  +++++|+||.+||+.   
T Consensus        95 vIh~~~~~~~q~~~V~~V~~~~~~m~~d--~v~l~~~~tv~ea~~~m~~~~~s~~pVvd~g~~~~lvGiVt~rDl~~---  169 (511)
T 3usb_A           95 IIHKNMSIEQQAEQVDKVKRSESGVISD--PFFLTPEHQVYDAEHLMGKYRISGVPVVNNLDERKLVGIITNRDMRF---  169 (511)
T ss_dssp             EECSSSCHHHHHHHHHHHHTSSSCSSSS--CCCBCTTSBHHHHHHHHHHHCCSEEEEESCTTTCBEEEEEEHHHHTT---
T ss_pred             eecccCCHHHHHHHHHHhhccccccccC--CEEECCCCCHHHHHHHHHHcCCcEEEEEecCCCCEEEEEEEehHhhh---
Confidence            346666655543     33445556655  458999999999999999999999999998  889999999999964   


Q ss_pred             hcCCchhhhhHhhhcCC-CCeeeCCCccHHHHHHHhcCCCCCccEeEEEeCCCcEEEEEehhhHhhc
Q 019775          269 ASGEGIFKLTVGEMCNR-SPRTIGPDAMAVEAMQKMESPPSPVQFLPVINRQNILIGIVTLHGLVSA  334 (336)
Q Consensus       269 ~~~~~~~~~~i~~~~~~-~~~~v~~~~~l~~~~~~~~~~~~~~~~l~Vv~~~~~~iGiit~~di~~~  334 (336)
                      .   .....++.++|.+ ++.++++++++.++++.|.++  +.+.+||+|++|+++|+||..|+++.
T Consensus       170 ~---~~~~~~V~~vM~~~~~vtv~~~~~l~eal~~m~~~--~i~~lpVVDe~g~l~GiIT~~Dil~~  231 (511)
T 3usb_A          170 I---QDYSIKISDVMTKEQLITAPVGTTLSEAEKILQKY--KIEKLPLVDNNGVLQGLITIKDIEKV  231 (511)
T ss_dssp             C---CCSSSBHHHHCCCCCCCCEETTCCHHHHHHHHHHH--TCSEEEEECTTSBEEEEEEHHHHHHH
T ss_pred             h---ccCCCcHHHhcccCCCEEECCCCCHHHHHHHHHHc--CCCEEEEEeCCCCEeeeccHHHHHHh
Confidence            1   1135789999998 889999999999999999999  99999999999999999999999874

>2yzq_A Putative uncharacterized protein PH1780; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; HET: SAM; 1.63A {Pyrococcus horikoshii} SCOP: d.37.1.1 d.37.1.1

Probab=99.53  E-value=4.4e-14  Score=124.34  Aligned_cols=119  Identities=21%  Similarity=0.268  Sum_probs=102.5

Q ss_pred             hhhhhccccCCCCccccCCCcHHHHHHHHHhcCcceEEEEcCCCcEEEEeeHHHHHH-HHHhcCCchhhhhHhhhcCCCC
Q 019775          209 FKVQDVMKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRR-TLKASGEGIFKLTVGEMCNRSP  287 (336)
Q Consensus       209 ~~v~~im~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~it~~dl~~-~~~~~~~~~~~~~i~~~~~~~~  287 (336)
                      .+++++|.+.  +++++++.++.++++.|.+++.+.+||+|++|+++|++|.+|+.. .+... ......++.++|.+++
T Consensus        60 ~~v~~~m~~~--~~~v~~~~~l~~a~~~m~~~~~~~~~Vvd~~~~~~Giit~~di~~~~~~~~-~~~~~~~v~~~m~~~~  136 (282)
T 2yzq_A           60 EQLAMLVKRD--VPVVKENDTLKKAAKLMLEYDYRRVVVVDSKGKPVGILTVGDIIRRYFAKS-EKYKGVEIEPYYQRYV  136 (282)
T ss_dssp             ----CCCBSC--CCEEETTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHTTTTC-SGGGGCBSTTTSBSCC
T ss_pred             CCHHHHcCCC--CcEECCCCcHHHHHHHHHHcCCCEEEEEcCCCEEEEEEEHHHHHHHHHhcc-CCcccCcHHHHhCCCC
Confidence            4688999886  458999999999999999999999999998899999999999998 55432 2223567889998889


Q ss_pred             eeeCCCccHHHHHHHhcCCCCCccEeEEEeCCCcEEEEEehhhHh
Q 019775          288 RTIGPDAMAVEAMQKMESPPSPVQFLPVINRQNILIGIVTLHGLV  332 (336)
Q Consensus       288 ~~v~~~~~l~~~~~~~~~~~~~~~~l~Vv~~~~~~iGiit~~di~  332 (336)
                      ..+.+++++.++++.|.++  +.+.+||+|++|+++|+||..|++
T Consensus       137 ~~v~~~~~l~~~~~~~~~~--~~~~l~Vvd~~~~~~Giit~~dl~  179 (282)
T 2yzq_A          137 SIVWEGTPLKAALKALLLS--NSMALPVVDSEGNLVGIVDETDLL  179 (282)
T ss_dssp             CCEETTSBHHHHHHHHHTC--SSSEEEEECTTSCEEEEEEGGGGG
T ss_pred             EEECCCCCHHHHHHHHHHc--CCcEEEEEcCCCeEEEEEEHHHHh
Confidence            9999999999999999999  899999999889999999999998

>2v8q_E 5'-AMP-activated protein kinase subunit gamma-1; phosphorylation, nucleotide-binding, serine/threonine-protei kinase, magnesium, CBS domain; HET: AMP; 2.10A {Rattus norvegicus} SCOP: d.37.1.1 d.37.1.1 PDB: 2v92_E* 2v9j_E* 2y8l_E* 2y8q_E* 2y94_E* 2ya3_E*

Probab=99.51  E-value=5.8e-14  Score=126.56  Aligned_cols=121  Identities=12%  Similarity=0.189  Sum_probs=102.6

Q ss_pred             hhhhc--cc-cCCCCccccCCCcHHHHHHHHHhcCcceEEEEcCCCcEEEEeeHHHHHHHHHhcCCchhhhhHhhhc---
Q 019775          210 KVQDV--MK-PQKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRRTLKASGEGIFKLTVGEMC---  283 (336)
Q Consensus       210 ~v~~i--m~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~it~~dl~~~~~~~~~~~~~~~i~~~~---  283 (336)
                      +++++  |. +.  +++++++.++.++++.|.+++.+.+||+|++|+++|+||.+|++..+..........++.++|   
T Consensus       191 ~v~~~~v~~~~~--~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~~~l~Giit~~dl~~~~~~~~~~~~~~~v~~~~~~~  268 (330)
T 2v8q_E          191 SLEELQIGTYAN--IAMVRTTTPVYVALGIFVQHRVSALPVVDEKGRVVDIYSKFDVINLAAEKTYNNLDVSVTKALQHR  268 (330)
T ss_dssp             BHHHHTCSBCSS--CCCEETTCBHHHHHHHHHHHCCSEEEEECTTSBEEEEEEGGGTGGGGGSSCCCCCSSBHHHHGGGC
T ss_pred             CHHHhcccCcCC--ceEECCCCCHHHHHHHHHHcCCCeEEEECCCCcEEEEEEHHHHHHHHhccccccccCcHHHHHhcc
Confidence            45555  43 33  568999999999999999999999999998899999999999998765432222246788887   


Q ss_pred             ---CCCCeeeCCCccHHHHHHHhcCCCCCccEeEEEeCCCcEEEEEehhhHhhc
Q 019775          284 ---NRSPRTIGPDAMAVEAMQKMESPPSPVQFLPVINRQNILIGIVTLHGLVSA  334 (336)
Q Consensus       284 ---~~~~~~v~~~~~l~~~~~~~~~~~~~~~~l~Vv~~~~~~iGiit~~di~~~  334 (336)
                         .+++.++.+++++.++++.|.++  +.+.+||+|++|+++|+||..||+++
T Consensus       269 ~~~~~~~~~v~~~~~l~~a~~~m~~~--~~~~l~Vvd~~g~l~Giit~~Dil~~  320 (330)
T 2v8q_E          269 SHYFEGVLKCYLHETLEAIINRLVEA--EVHRLVVVDEHDVVKGIVSLSDILQA  320 (330)
T ss_dssp             CSCCCSCCEECTTSBHHHHHHHHHHH--TCSEEEEECTTSBEEEEEEHHHHHHH
T ss_pred             ccccCCCeEECCCCcHHHHHHHHHHC--CCcEEEEEcCCCcEEEEEeHHHHHHH
Confidence               47888999999999999999999  99999999988999999999999874

>2v8q_E 5'-AMP-activated protein kinase subunit gamma-1; phosphorylation, nucleotide-binding, serine/threonine-protei kinase, magnesium, CBS domain; HET: AMP; 2.10A {Rattus norvegicus} SCOP: d.37.1.1 d.37.1.1 PDB: 2v92_E* 2v9j_E* 2y8l_E* 2y8q_E* 2y94_E* 2ya3_E*

Probab=99.50  E-value=3.5e-14  Score=128.03  Aligned_cols=125  Identities=16%  Similarity=0.202  Sum_probs=104.6

Q ss_pred             hhhhhhccccCCCCccccCCCcHHHHHHHHHhcCcceEEEEcCC-CcEEEEeeHHHHHHHHHhcC-------Cch-----
Q 019775          208 IFKVQDVMKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEE-YHLIGTFTDGDLRRTLKASG-------EGI-----  274 (336)
Q Consensus       208 ~~~v~~im~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~-~~~~G~it~~dl~~~~~~~~-------~~~-----  274 (336)
                      ..+|+++|.|...+++++++.++.++++.|.+++++.+||++++ ++++|+++.+|++..+....       ...     
T Consensus        34 ~~~v~dim~p~~~v~~v~~~~~v~~a~~~~~~~~~~~~pV~d~~~~~~vGivt~~Dll~~l~~~~~~~~~~~~~l~~~~~  113 (330)
T 2v8q_E           34 SHRCYDLIPTSSKLVVFDTSLQVKKAFFALVTNGVRAAPLWDSKKQSFVGMLTITDFINILHRYYKSALVQIYELEEHKI  113 (330)
T ss_dssp             HSBGGGGSCSEEEEEEEETTSBHHHHHHHHHHHTCSEEEEEETTTTEEEEEEEHHHHHHHHHHHHHHHTTTCCCGGGCBH
T ss_pred             cCcHhhhccCCCcEEEEeCCCcHHHHHHHHHHcCCcEEEEEeCCCCeEEEEEEHHHHHHHHHHHHhccccchhHHhhccH
Confidence            45899999665557899999999999999999999999999977 78999999999998664311       000     


Q ss_pred             --hhhhHhhhcCCCCeeeCCCccHHHHHHHhcCCCCCccEeEEEeC-CCcEEEEEehhhHhhc
Q 019775          275 --FKLTVGEMCNRSPRTIGPDAMAVEAMQKMESPPSPVQFLPVINR-QNILIGIVTLHGLVSA  334 (336)
Q Consensus       275 --~~~~i~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~l~Vv~~-~~~~iGiit~~di~~~  334 (336)
                        ....+.++|.+++.++.+++++.++++.|.++  +.+.+||+|+ +|+++|+||..|++++
T Consensus       114 ~~~~~~~~~im~~~~~~v~~~~~~~~a~~~~~~~--~~~~~~Vvd~~~~~~~Givt~~dl~~~  174 (330)
T 2v8q_E          114 ETWREVYLQDSFKPLVCISPNASLFDAVSSLIRN--KIHRLPVIDPESGNTLYILTHKRILKF  174 (330)
T ss_dssp             HHHHHHHSSSSCCCCCCBCTTSBHHHHHHHHHHH--TCSCEEEECTTTCCEEEEECHHHHHHH
T ss_pred             HHHHHHHhhcccCCceEeCCCCCHHHHHHHHHHC--CCCeEEEEeCCCCcEEEEEcHHHHHHH
Confidence              01234567788899999999999999999998  8999999997 7999999999999863

>3t4n_C Nuclear protein SNF4; CBS domain, nucleotide binding, cytosol, protein binding; HET: ADP; 2.30A {Saccharomyces cerevisiae} PDB: 3tdh_C* 3te5_C* 2qlv_C

Probab=99.50  E-value=1.1e-13  Score=124.45  Aligned_cols=123  Identities=11%  Similarity=0.246  Sum_probs=102.4

Q ss_pred             hhhhhhccccCCCCccccCCCcHHHHHHHHHhcCcceEEEEcCCCc-----EEEEeeHHHHHHHHHhcCC--chhhhhHh
Q 019775          208 IFKVQDVMKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYH-----LIGTFTDGDLRRTLKASGE--GIFKLTVG  280 (336)
Q Consensus       208 ~~~v~~im~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~~~-----~~G~it~~dl~~~~~~~~~--~~~~~~i~  280 (336)
                      .+.+.++|.+.  +++++++.++.++++.|.+++++.+||+|+++.     ++|++|.+|++..+.....  .....++.
T Consensus       113 i~~~~~~~~~~--~v~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~~~~~l~Givt~~di~~~l~~~~~~~~~~~~~v~  190 (323)
T 3t4n_C          113 IERALGVDQLD--TASIHPSRPLFEACLKMLESRSGRIPLIDQDEETHREIVVSVLTQYRILKFVALNCRETHFLKIPIG  190 (323)
T ss_dssp             HHHHTTC------CCCBCTTSBHHHHHHHHHHHTCSEEEEEEECTTTCCEEEEEEEEHHHHHHHHHHHCGGGGGCCSBGG
T ss_pred             HHHHhCCCCCC--ceEeCCCCcHHHHHHHHHhCCeeEEEEEecCCCCCccceEEEecHHHHHHHHHhcCCchhhhhCcHH
Confidence            34556667665  568999999999999999999999999997775     9999999999988764321  11235788


Q ss_pred             hh---cCCCCeeeCCCccHHHHHHHhcCCCCCccEeEEEeCCCcEEEEEehhhHhhc
Q 019775          281 EM---CNRSPRTIGPDAMAVEAMQKMESPPSPVQFLPVINRQNILIGIVTLHGLVSA  334 (336)
Q Consensus       281 ~~---~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~l~Vv~~~~~~iGiit~~di~~~  334 (336)
                      ++   |.+++.++.+++++.++++.|.++  +...+||+|++|+++|+||..|++++
T Consensus       191 ~~~~~m~~~~~~v~~~~~~~~~~~~m~~~--~~~~~pVvd~~~~~~Giit~~dl~~~  245 (323)
T 3t4n_C          191 DLNIITQDNMKSCQMTTPVIDVIQMLTQG--RVSSVPIIDENGYLINVYEAYDVLGL  245 (323)
T ss_dssp             GTTCSBCTTCCCBCTTSBHHHHHHHHHHH--TCSEEEEECTTCBEEEEEETTHHHHH
T ss_pred             HcCCCCCCCcEEECCCCcHHHHHHHHHHc--CCCEEEEECCCCeEEEEEeHHHHHHH
Confidence            88   888899999999999999999998  89999999988999999999999863

>4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor}

Probab=99.48  E-value=2e-14  Score=135.78  Aligned_cols=116  Identities=20%  Similarity=0.224  Sum_probs=90.3

Q ss_pred             hhhhhccccCCCCccccCCCcHHHHHHHHHhcCcceEEEEcCCCcEEEEeeHHHHHHHHHhcCCchhhhhHhhhcC-C-C
Q 019775          209 FKVQDVMKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRRTLKASGEGIFKLTVGEMCN-R-S  286 (336)
Q Consensus       209 ~~v~~im~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~it~~dl~~~~~~~~~~~~~~~i~~~~~-~-~  286 (336)
                      ..++++|.++  ++++++++++.++.++|.+++++.+||+|++++++|+||.+||+..      .....++.++|. + +
T Consensus        89 k~~~~~m~~d--~v~v~~~~tv~ea~~~m~~~~~s~~PVvd~~~~lvGiVt~rDL~~~------~~~~~~v~diM~p~~~  160 (496)
T 4fxs_A           89 KIFEAGVVTH--PVTVRPEQTIADVMELTHYHGFAGFPVVTENNELVGIITGRDVRFV------TDLTKSVAAVMTPKER  160 (496)
T ss_dssp             HHCCC--CBC--CCCBCSSSBHHHHHHHHTSSCCCEEEEECSSSBEEEEEEHHHHTTC------CCTTSBGGGTSEEGGG
T ss_pred             cccccccccC--ceEECCCCCHHHHHHHHHHcCCcEEEEEccCCEEEEEEEHHHHhhc------ccCCCcHHHHhcCCCC
Confidence            4567789876  4599999999999999999999999999988999999999999721      123578999998 3 5


Q ss_pred             CeeeCCCccHHHHHHHhcCCCCCccEeEEEeCCCcEEEEEehhhHhhc
Q 019775          287 PRTIGPDAMAVEAMQKMESPPSPVQFLPVINRQNILIGIVTLHGLVSA  334 (336)
Q Consensus       287 ~~~v~~~~~l~~~~~~~~~~~~~~~~l~Vv~~~~~~iGiit~~di~~~  334 (336)
                      +.++++++++.++++.|.++  +.+.+||+|++|+++|+||++|++++
T Consensus       161 ~vtv~~~~~l~ea~~~m~~~--~i~~lpVVDe~G~l~GiIT~~DIl~~  206 (496)
T 4fxs_A          161 LATVKEGATGAEVQEKMHKA--RVEKILVVNDEFQLKGMITAKDFHKA  206 (496)
T ss_dssp             CCEEECC----CGGGTCC-----CCCEEEECTTSBCCEEECCC-----
T ss_pred             CEEECCCCCHHHHHHHHHHc--CCCEEEEEcCCCCEEEeehHhHHHHh
Confidence            88999999999999999999  99999999999999999999999875

>2qrd_G Protein C1556.08C; AMPK, ADP, ATP-binding, kinase, nucleotide-binding, serine/T protein kinase, transferase, CBS domain; HET: ADP ATP; 2.41A {Schizosaccharomyces pombe} PDB: 2qrc_G* 2qr1_G* 2qre_G* 2oox_G* 2ooy_G*

Probab=99.43  E-value=2.9e-13  Score=122.18  Aligned_cols=124  Identities=17%  Similarity=0.151  Sum_probs=101.6

Q ss_pred             hhhhhccccCCCCccccCCCcHHHHHHHHHhcCcceEEEEcCC-CcEEEEeeHHHHHHHHHhc-----CCc-------hh
Q 019775          209 FKVQDVMKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEE-YHLIGTFTDGDLRRTLKAS-----GEG-------IF  275 (336)
Q Consensus       209 ~~v~~im~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~-~~~~G~it~~dl~~~~~~~-----~~~-------~~  275 (336)
                      .+|+++|.+...+++++++.|+.++++.|.+++++.+||++++ ++++|+|+.+|++..+...     ...       ..
T Consensus        22 ~~v~dim~~~~~vv~v~~~~tv~~a~~~~~~~~~~~~pV~d~~~~~~vGiv~~~Dl~~~~~~~~~~~~~~~~~~~~~~~~  101 (334)
T 2qrd_G           22 RTSYDVLPTSFRLIVFDVTLFVKTSLSLLTLNNIVSAPLWDSEANKFAGLLTMADFVNVIKYYYQSSSFPEAIAEIDKFR  101 (334)
T ss_dssp             SBGGGGSCSEEEEEEEETTSBHHHHHHHHHHHTCSCEEEEETTTTEEEEEECHHHHHHHHHHHHHHCSCGGGGGGGGSCB
T ss_pred             CchhhhCCCCCCEEEEcCCCCHHHHHHHHHHcCCeEEEEEeCCCCeEEEEEEHHHHHHHHHHHhhccCCccHHHHHhhhc
Confidence            6899999987767789999999999999999999999999976 7999999999999866321     000       00


Q ss_pred             hhhH----hhhcCCCC--eeeCCCccHHHHHHHhcCCCCCccEeEEEeCCCc-----EEEEEehhhHhhc
Q 019775          276 KLTV----GEMCNRSP--RTIGPDAMAVEAMQKMESPPSPVQFLPVINRQNI-----LIGIVTLHGLVSA  334 (336)
Q Consensus       276 ~~~i----~~~~~~~~--~~v~~~~~l~~~~~~~~~~~~~~~~l~Vv~~~~~-----~iGiit~~di~~~  334 (336)
                      ...+    .++|.+++  .++.+++++.++++.|.++  +...+||+|++|.     ++|+||..|++++
T Consensus       102 ~~~i~~~l~~im~~~~~~~~v~~~~~~~~a~~~~~~~--~~~~~~Vvd~~~~~~~~~~~Givt~~dl~~~  169 (334)
T 2qrd_G          102 LLGLREVERKIGAIPPETIYVHPMHSLMDACLAMSKS--RARRIPLIDVDGETGSEMIVSVLTQYRILKF  169 (334)
T ss_dssp             HHHHHHHHHHHTCSCSSCCCBCTTSBHHHHHHHHHHS--CCSEEEEEEEETTTTEEEEEEEEEHHHHHHH
T ss_pred             hhhHHHHHHhhccCCCceeeeCCCCcHHHHHHHHHHC--CceEEEEEeCCCCcCccceEEEeeHHHHHHH
Confidence            1122    33466666  8899999999999999998  8999999987654     9999999999863

>1zfj_A Inosine monophosphate dehydrogenase; IMPDH, CBS domains, oxidoreductase; HET: IMP; 1.90A {Streptococcus pyogenes} SCOP: c.1.5.1 d.37.1.1

Probab=99.43  E-value=3.5e-13  Score=127.98  Aligned_cols=116  Identities=11%  Similarity=0.158  Sum_probs=103.9

Q ss_pred             hhhhhccccCCCCccccCCCcHHHHHHHHHhcCcceEEEEc--CCCcEEEEeeHHHHHHHHHhcCCchhhhhHhhhcCC-
Q 019775          209 FKVQDVMKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVID--EEYHLIGTFTDGDLRRTLKASGEGIFKLTVGEMCNR-  285 (336)
Q Consensus       209 ~~v~~im~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ipVvd--~~~~~~G~it~~dl~~~~~~~~~~~~~~~i~~~~~~-  285 (336)
                      ..++++|.++  +++++++.++.++++.|.+++++.+||+|  ++++++|+|+.+||+...   .   ...++.++|.+ 
T Consensus        90 ~~~~~im~~~--~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~~~~~lvGivt~~Dl~~~~---~---~~~~v~~im~~~  161 (491)
T 1zfj_A           90 KRSENGVIID--PFFLTPEHKVSEAEELMQRYRISGVPIVETLANRKLVGIITNRDMRFIS---D---YNAPISEHMTSE  161 (491)
T ss_dssp             HHHTTTTSSS--CCCBCSSSBHHHHHHHHHHTTCSEEEEESCTTTCBEEEEEEHHHHHHCS---C---SSSBTTTSCCCS
T ss_pred             hhHHhcCcCC--CeEECCCCcHHHHHHHHHHcCCCEEEEEEeCCCCEEEEEEEHHHHhhhc---c---CCCcHHHHcCCC
Confidence            3568899986  56899999999999999999999999999  789999999999998531   1   25789999998 


Q ss_pred             CCeeeCCCccHHHHHHHhcCCCCCccEeEEEeCCCcEEEEEehhhHhhc
Q 019775          286 SPRTIGPDAMAVEAMQKMESPPSPVQFLPVINRQNILIGIVTLHGLVSA  334 (336)
Q Consensus       286 ~~~~v~~~~~l~~~~~~~~~~~~~~~~l~Vv~~~~~~iGiit~~di~~~  334 (336)
                      ++.++++++++.++++.|.++  +...+||+|++|+++|+||+.||++.
T Consensus       162 ~~~~v~~~~~l~~a~~~m~~~--~~~~lpVVd~~g~lvGivt~~Dil~~  208 (491)
T 1zfj_A          162 HLVTAAVGTDLETAERILHEH--RIEKLPLVDNSGRLSGLITIKDIEKV  208 (491)
T ss_dssp             CCCCEETTCCHHHHHHHHHHT--TCSEEEEECTTSBEEEEEEHHHHHHH
T ss_pred             CCEEECCCCCHHHHHHHHHHc--CCCEEEEEcCCCcEEEEEEHHHHHHH
Confidence            888999999999999999999  99999999999999999999999863

>4avf_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase; 2.23A {Pseudomonas aeruginosa}

Probab=99.42  E-value=1.4e-14  Score=136.66  Aligned_cols=115  Identities=19%  Similarity=0.188  Sum_probs=3.4

Q ss_pred             hhhhhccccCCCCccccCCCcHHHHHHHHHhcCcceEEEEcCCCcEEEEeeHHHHHHHHHhcCCchhhhhHhhhcC-C-C
Q 019775          209 FKVQDVMKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRRTLKASGEGIFKLTVGEMCN-R-S  286 (336)
Q Consensus       209 ~~v~~im~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~it~~dl~~~~~~~~~~~~~~~i~~~~~-~-~  286 (336)
                      ..++++|.++  ++++++++++.+++++|.+++++.+||+| +++++|+||.+||+....      ...++.++|. + +
T Consensus        88 k~~~~~m~~~--~v~v~~~~tv~ea~~~m~~~~~s~~pVvd-~g~lvGIVt~rDl~~~~~------~~~~V~~vMtp~~~  158 (490)
T 4avf_A           88 KKHETAIVRD--PVTVTPSTKIIELLQMAREYGFSGFPVVE-QGELVGIVTGRDLRVKPN------AGDTVAAIMTPKDK  158 (490)
T ss_dssp             HHCCC---------------------------------------------------------------------------
T ss_pred             cccccCcccC--ceEeCCCCcHHHHHHHHHHhCCCEEEEEE-CCEEEEEEEhHHhhhccc------cCCcHHHHhccCCC
Confidence            4678889877  45899999999999999999999999999 899999999999964221      2578999998 4 6


Q ss_pred             CeeeCCCccHHHHHHHhcCCCCCccEeEEEeCCCcEEEEEehhhHhhc
Q 019775          287 PRTIGPDAMAVEAMQKMESPPSPVQFLPVINRQNILIGIVTLHGLVSA  334 (336)
Q Consensus       287 ~~~v~~~~~l~~~~~~~~~~~~~~~~l~Vv~~~~~~iGiit~~di~~~  334 (336)
                      +.++++++++.++++.|.++  +.+.+||+|++|+++|+||++|++++
T Consensus       159 ~vtv~~~~~l~ea~~~m~~~--~i~~lpVVDe~g~lvGiIT~~Dil~~  204 (490)
T 4avf_A          159 LVTAREGTPLEEMKAKLYEN--RIEKMLVVDENFYLRGLVTFRDIEKA  204 (490)
T ss_dssp             ------------------------------------------------
T ss_pred             CEEECCCCcHHHHHHHHHHc--CCCEEEEEcCCCcEEEEEehHHhhhh
Confidence            88999999999999999999  99999999999999999999999975

>1me8_A Inosine-5'-monophosphate dehydrogenase; alpha beta barrel, oxidoreductase; HET: RVP; 1.90A {Tritrichomonas foetus} SCOP: c.1.5.1 PDB: 1ak5_A* 1me7_A* 1me9_A* 1meh_A* 1mei_A* 1mew_A* 1pvn_A* 1lrt_A*

Probab=99.41  E-value=2.2e-14  Score=136.06  Aligned_cols=116  Identities=19%  Similarity=0.094  Sum_probs=2.3

Q ss_pred             hhhhc-cccCCCCccccCCCcHHHHHHHHHhcCcceEEEEcCC---CcEEEEeeHHHHHHHHHhcCCchhhhhHhhhcCC
Q 019775          210 KVQDV-MKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEE---YHLIGTFTDGDLRRTLKASGEGIFKLTVGEMCNR  285 (336)
Q Consensus       210 ~v~~i-m~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~---~~~~G~it~~dl~~~~~~~~~~~~~~~i~~~~~~  285 (336)
                      +..++ |.++  ++++++++|+.+++++|.+++++.+||+|++   ++++|+||.+||+..  .   .....++.++|.+
T Consensus        97 ~~~e~gM~~~--~~~v~~~~tv~eal~~m~~~~~s~~pVvd~~~~~g~lvGiVt~~Dl~~~--~---~~~~~~V~diM~~  169 (503)
T 1me8_A           97 KNFKAGFVVS--DSNVKPDQTFADVLAISQRTTHNTVAVTDDGTPHGVLLGLVTQRDYPID--L---TQTETKVSDMMTP  169 (503)
T ss_dssp             HTTTC---------------------------------------------------------------------------
T ss_pred             hhcccCcccC--CeEECCCCcHHHHHHHHHHcCceEEEEEECCCcCCeEEEEEEHHHHHhh--h---ccccCcHHHHhCC
Confidence            34455 8886  5589999999999999999999999999976   899999999999864  1   1135789999998


Q ss_pred             C--CeeeCCCccHHHHHHHhcCCCCCccEeEEEeCCCcEEEEEehhhHhhc
Q 019775          286 S--PRTIGPDAMAVEAMQKMESPPSPVQFLPVINRQNILIGIVTLHGLVSA  334 (336)
Q Consensus       286 ~--~~~v~~~~~l~~~~~~~~~~~~~~~~l~Vv~~~~~~iGiit~~di~~~  334 (336)
                      +  +.++.+++++.++++.|.++  +.+.+||+|++|+++|+||.+||++.
T Consensus       170 ~~~~~tv~~~~sl~ea~~~m~~~--~i~~lpVVDe~g~lvGiIT~~Dil~~  218 (503)
T 1me8_A          170 FSKLVTAHQDTKLSEANKIIWEK--KLNALPIIDDDQHLRYIVFRKDYDRS  218 (503)
T ss_dssp             ---------------------------------------------------
T ss_pred             CCCCEEEcCCCcHHHHHHHHHHc--CCCEEEEEcCCCeEEEEEEecHHHHh
Confidence            7  89999999999999999999  99999999999999999999999874

>1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural G joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.18A {Thermotoga maritima} SCOP: c.1.5.1

Probab=99.40  E-value=2.1e-14  Score=136.44  Aligned_cols=116  Identities=19%  Similarity=0.284  Sum_probs=4.7

Q ss_pred             hhhhhccccCCCCccccCCCcHHHHHHHHHhcCcceEEEEcCCCcEEEEeeHHHHHHHHHhcCCchhhhhHhhhcCC--C
Q 019775          209 FKVQDVMKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRRTLKASGEGIFKLTVGEMCNR--S  286 (336)
Q Consensus       209 ~~v~~im~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~it~~dl~~~~~~~~~~~~~~~i~~~~~~--~  286 (336)
                      ..++++|.++  +++++++.++.+++++|.+++++.+||+|++++++|+||.+|++...      ....++.++|.+  +
T Consensus        95 ~~~~~iM~~~--~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~~~lvGivt~~Dl~~~~------~~~~~v~~im~~~~~  166 (494)
T 1vrd_A           95 KKTENGIIYD--PITVTPDMTVKEAIDLMAEYKIGGLPVVDEEGRLVGLLTNRDVRFEK------NLSKKIKDLMTPREK  166 (494)
T ss_dssp             HTC-----------------------------------------------------------------------------
T ss_pred             hhHhhcCccC--CeEECCCCCHHHHHHHHHHcCceEEEEEcCCCEEEEEEEHHHHHhhc------CCCCcHHHHhCCCCC
Confidence            4578889886  56899999999999999999999999999889999999999998631      125789999998  8


Q ss_pred             CeeeCCCccHHHHHHHhcCCCCCccEeEEEeCCCcEEEEEehhhHhhc
Q 019775          287 PRTIGPDAMAVEAMQKMESPPSPVQFLPVINRQNILIGIVTLHGLVSA  334 (336)
Q Consensus       287 ~~~v~~~~~l~~~~~~~~~~~~~~~~l~Vv~~~~~~iGiit~~di~~~  334 (336)
                      +.++.+++++.++++.|.++  +...+||+|++|+++|+||..|+++.
T Consensus       167 ~~~v~~~~~l~ea~~~m~~~--~~~~lpVVd~~g~lvGiIt~~Dll~~  212 (494)
T 1vrd_A          167 LIVAPPDISLEKAKEILHQH--RIEKLPLVSKDNKLVGLITIKDIMSV  212 (494)
T ss_dssp             --------------------------------------------CHHH
T ss_pred             CeEECCCCCHHHHHHHHHHc--CCcEEEEEcCCCeEEEEEEHHHHHhh
Confidence            89999999999999999999  99999999999999999999999874

>4af0_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase, GTP biosynthesis, drug resistance; HET: MOA IMP; 2.20A {Cryptococcus neoformans} PDB: 4af0_B*

Probab=99.38  E-value=4.5e-14  Score=130.65  Aligned_cols=128  Identities=13%  Similarity=0.110  Sum_probs=8.2

Q ss_pred             hcCCCCchhhhhh--hhh---hhccccCCCCccccCCCcHHHHHHHHHhcCcceEEEEcC---CCcEEEEeeHHHHHHHH
Q 019775          196 ANHPAGRIGKSLI--FKV---QDVMKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVIDE---EYHLIGTFTDGDLRRTL  267 (336)
Q Consensus       196 ~~~~~~~~~~~~~--~~v---~~im~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~---~~~~~G~it~~dl~~~~  267 (336)
                      -.|++.+++....  .+|   +..|..++.  ++.|+.|+.|+.+++.+++++.+||+++   +++++|+||.+|++.. 
T Consensus       120 vIH~n~sie~Qa~~V~~VKr~e~g~i~dPv--tl~P~~Tv~da~~l~~~~~isgvpVvd~g~~~~kLvGIvT~RD~rf~-  196 (556)
T 4af0_A          120 IIHHNCSAEEQAAMVRRVKKYENGFITDPL--CLGPDATVGDVLEIKAKFGFCGVPITETGEPDSKLLGIVTGRDVQFQ-  196 (556)
T ss_dssp             EECCSSCHHHHHHHHHHHHHCCC---------------------------------------------------------
T ss_pred             EEcCCCCHHHHHHHHHHHHhcccCccCCCe--EcCCCCCHHHHHHHHHHhCCCccccccccCcCCEEEEEEeccccccc-
Confidence            3466666655431  122   234555543  8999999999999999999999999986   5799999999998642 


Q ss_pred             HhcCCchhhhhHhhhcCCCCeeeCCCccHHHHHHHhcCCCCCccEeEEEeCCCcEEEEEehhhHhhc
Q 019775          268 KASGEGIFKLTVGEMCNRSPRTIGPDAMAVEAMQKMESPPSPVQFLPVINRQNILIGIVTLHGLVSA  334 (336)
Q Consensus       268 ~~~~~~~~~~~i~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~l~Vv~~~~~~iGiit~~di~~~  334 (336)
                      .      ...++.++|.+++++++++.+++++.++|.++  +.+.+||||++|+++|+||++|+.+.
T Consensus       197 d------~~~~V~evMT~~lvt~~~~~~leeA~~iL~~~--kieklpVVd~~g~LvGlIT~kDi~k~  255 (556)
T 4af0_A          197 D------AETPIKSVMTTEVVTGSSPITLEKANSLLRET--KKGKLPIVDSNGHLVSLVARSDLLKN  255 (556)
T ss_dssp             -------------------------------------------------------------------
T ss_pred             c------cceEhhhhcccceEEecCCCCHHHHHHHHHHc--cccceeEEccCCcEEEEEEechhhhh
Confidence            1      25789999999999999999999999999999  99999999999999999999999875

>1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A*

Probab=99.27  E-value=1e-13  Score=132.27  Aligned_cols=118  Identities=14%  Similarity=0.133  Sum_probs=69.3

Q ss_pred             hhhhhccccCCCCccccCCCcHHHHHHHHHhcCcceEEEEcC---CCcEEEEeeHHHHHHHHHhcCCchhhhhHhhhcCC
Q 019775          209 FKVQDVMKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVIDE---EYHLIGTFTDGDLRRTLKASGEGIFKLTVGEMCNR  285 (336)
Q Consensus       209 ~~v~~im~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~---~~~~~G~it~~dl~~~~~~~~~~~~~~~i~~~~~~  285 (336)
                      .+++++|.++  .++++++.++.++.++|.+++++.+||+|+   +++++|+||.+|+.....    .....++.++|.+
T Consensus       108 ~~~~~im~~~--~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~~~~~~lvGiVt~~Dl~~~~~----~~~~~~v~~vm~~  181 (514)
T 1jcn_A          108 KNFEQGFITD--PVVLSPSHTVGDVLEAKMRHGFSGIPITETGTMGSKLVGIVTSRDIDFLAE----KDHTTLLSEVMTP  181 (514)
T ss_dssp             HTCCTTSCSS--CCCCCC-----------------CEESCC--------CCEECTTTTC--------------------C
T ss_pred             hhhhhccccC--CEEECCCCCHHHHHHHHHhcCCCEEEEEeCCCcCCEEEEEEEHHHHHhhhh----ccCCCCHHHHhCC
Confidence            4678899876  448999999999999999999999999997   589999999999976321    1125789999998


Q ss_pred             --CCeeeCCCccHHHHHHHhcCCCCCccEeEEEeCCCcEEEEEehhhHhhc
Q 019775          286 --SPRTIGPDAMAVEAMQKMESPPSPVQFLPVINRQNILIGIVTLHGLVSA  334 (336)
Q Consensus       286 --~~~~v~~~~~l~~~~~~~~~~~~~~~~l~Vv~~~~~~iGiit~~di~~~  334 (336)
                        ++.++.+++++.++++.|.++  +.+.+||+|++|+++|+||+.||+++
T Consensus       182 ~~~~~tv~~~~~l~ea~~~m~~~--~~~~lpVVd~~g~lvGiIt~~Dll~~  230 (514)
T 1jcn_A          182 RIELVVAPAGVTLKEANEILQRS--KKGKLPIVNDCDELVAIIARTDLKKN  230 (514)
T ss_dssp             CBCCCCEETTCCSTTTTTHHHHH--TCSCCCEESSSSCCC----CCCCSSC
T ss_pred             CCCCeEECCCCCHHHHHHHHHHc--CCCcccEECCCCeEEEEEEHHHHHHH
Confidence              899999999999999999999  99999999999999999999999864

>2cu0_A Inosine-5'-monophosphate dehydrogenase; structural genomics, pyrococcus horikoshii OT3, riken structural genomics/PROT initiative, RSGI; HET: XMP; 2.10A {Pyrococcus horikoshii} SCOP: c.1.5.1

Probab=99.21  E-value=1.1e-12  Score=124.04  Aligned_cols=112  Identities=19%  Similarity=0.311  Sum_probs=1.3

Q ss_pred             hhhhccccCCCCccccCCCcHHHHHHHHHhcCcceEEEEcCCCcEEEEeeHHHHHHHHHhcCCchhhhhHhhhcCCCCee
Q 019775          210 KVQDVMKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRRTLKASGEGIFKLTVGEMCNRSPRT  289 (336)
Q Consensus       210 ~v~~im~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~it~~dl~~~~~~~~~~~~~~~i~~~~~~~~~~  289 (336)
                      ..+++|..+  +++++++.++.++.+.|.+++++.+||+|+ ++++|+|+.+||+.  .      ...++.++|.+++.+
T Consensus        94 ~~~~~m~~~--~~~v~~~~tv~ea~~~~~~~~~~~~pVvd~-~~lvGivt~~Dl~~--~------~~~~v~~im~~~~~~  162 (486)
T 2cu0_A           94 RAERLIVED--VITIAPDETVDFALFLMEKHGIDGLPVVED-EKVVGIITKKDIAA--R------EGKLVKELMTKEVIT  162 (486)
T ss_dssp             TCC-----------------------------------------------------------------------------
T ss_pred             chhhccccC--ceEECCCCCHHHHHHHHHHcCCcEEEEEEC-CEEEEEEEHHHhcc--C------CCCCHHHHccCCCeE
Confidence            345677765  568999999999999999999999999997 89999999999986  1      256899999988899


Q ss_pred             eCCCccHHHHHHHhcCCCCCccEeEEEeCCCcEEEEEehhhHhhc
Q 019775          290 IGPDAMAVEAMQKMESPPSPVQFLPVINRQNILIGIVTLHGLVSA  334 (336)
Q Consensus       290 v~~~~~l~~~~~~~~~~~~~~~~l~Vv~~~~~~iGiit~~di~~~  334 (336)
                      +++++++.++++.|.++  +.+.+||+|++|+++|+||++||++.
T Consensus       163 v~~~~~l~eal~~m~~~--~~~~lpVVde~g~lvGiiT~~Dil~~  205 (486)
T 2cu0_A          163 VPESIEVEEALKIMIEN--RIDRLPVVDERGKLVGLITMSDLVAR  205 (486)
T ss_dssp             ---------------------------------------------
T ss_pred             ECCcCcHHHHHHHHHHc--CCCEEEEEecCCeEEEEEEHHHHHHh
Confidence            99999999999999999  99999999998999999999999874

>3ghd_A A cystathionine beta-synthase domain protein FUSE ribbon-like domain; PF1953,APC40009,cystathionine beta-synthase domain protein; 1.81A {Pyrococcus furiosus}

Probab=99.18  E-value=3.2e-11  Score=82.45  Aligned_cols=69  Identities=20%  Similarity=0.315  Sum_probs=60.0

Q ss_pred             CccccCCCcHHHHHHHHHhcCcceEEEEcCCCcEEEEeeHHHHHHHHHhcCCchhhhhHhhhcCCCCeee
Q 019775          221 LPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRRTLKASGEGIFKLTVGEMCNRSPRTI  290 (336)
Q Consensus       221 ~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~it~~dl~~~~~~~~~~~~~~~i~~~~~~~~~~v  290 (336)
                      .+++++++|+.+|+++|.+++++++||+| +|+++|++|.+||...+...+......++.++|.++|.++
T Consensus         2 ~vtv~p~~tv~ea~~~M~~~~i~~~~V~d-~~~lvGIvT~~Di~~~~~~~~~~~~~~~V~~iMt~~~iTV   70 (70)
T 3ghd_A            2 AIVVQPKDTVDRVAKILSRNKAGSAVVME-GDEILGVVTERDILDKVVAKGKNPKEVKVEEIMTKNPVKI   70 (70)
T ss_dssp             EEEECTTCBHHHHHHHHHHTTCSEEEEEE-TTEEEEEEEHHHHHHHTTTTTCCGGGCBGGGTCEECTTCC
T ss_pred             CEEECCCCcHHHHHHHHHHcCCCEEEEEE-CCEEEEEEEHHHHHHHHHhcCCCcccCCHHHhcCCCCeEC
Confidence            35789999999999999999999999998 6899999999999987766555555778999999888653

>2q8n_A Glucose-6-phosphate isomerase; TM1385, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; HET: 2PE; 1.82A {Thermotoga maritima MSB8}

Probab=99.11  E-value=8.4e-11  Score=108.95  Aligned_cols=108  Identities=17%  Similarity=0.227  Sum_probs=93.2

Q ss_pred             hhHHHHHHHHHHcCCCeEEEEeccchHHHHHHHHHHHHhc------------CCeeeecC--CccccccccCCCCCCc-E
Q 019775           40 LPHTLTFTQTLLKCRGTIFFTGVGKSGFVANKISQTLISL------------GIKSGFLN--PLDALHGDIGILSSDD-I  104 (336)
Q Consensus        40 ~~~i~~~~~~i~~a~~~I~i~G~G~s~~~a~~~~~~l~~~------------g~~~~~~~--~~~~~~~~~~~~~~~d-l  104 (336)
                      .+.++++++.+.+. ++|+++|.|.|+.-+..+...|...            +.++++++  +...+...+..+++++ +
T Consensus        65 ~~~i~~~a~~i~~~-~~Vv~IGIGGS~LG~~~~~~aL~~~~~~~~~~~~~~~~~~v~~~~nvdp~~~~~~l~~L~~~~Tl  143 (460)
T 2q8n_A           65 IDSVKSLEDWIINF-DTVVVLGIGGSGLGNLALHYSLRPLNWNEMTREERNGYARVFVVDNVDPDLMSSVLDRIDPKTTL  143 (460)
T ss_dssp             HHHHHTTHHHHTTC-SEEEEECCGGGTHHHHHHHHHHSCTTGGGSCTTTTTTCCEEEEECSCCHHHHHHHHTTCCGGGEE
T ss_pred             HHHHHHHHHHhcCC-CEEEEEecCchHHHHHHHHHHHHhhhhcccccccccCCcceEEecCCCHHHHHHHHhcCCCCCEE
Confidence            57888899999888 6999999999999999999999754            56777777  5555666666776655 8


Q ss_pred             EEEEeCCCCcHHHHHHHHHHHHc-----C---CeEEEEeCCCCCccccccCE
Q 019775          105 LVMFSKSGNTEELLKVVPCAKAK-----G---AYLVSVTSVEGNALAAVCDM  148 (336)
Q Consensus       105 vi~iS~sG~~~~~~~~~~~ak~~-----g---~~vi~IT~~~~s~l~~~ad~  148 (336)
                      +|++|.||.|.|++.+++.+|++     |   .++|+||++..++|.+.||.
T Consensus       144 vIviSKSGtT~ET~~~~~~ar~~l~~~~G~~~~~~VAvT~~~~s~L~~~A~~  195 (460)
T 2q8n_A          144 FNVISKSGSTAEVMATYSIARGILEAYGLDPREHMLITTDPEKGFLRKLVKE  195 (460)
T ss_dssp             EEEECSSSCCHHHHHHHHHHHHHHHHTTCCGGGTEEEEECSSSSHHHHHHHH
T ss_pred             EEEEcCCCCCHHHHHHHHHHHHHHHHhcCCccCeEEEEeCCCCChHHHHHHH
Confidence            99999999999999999999988     7   89999999999999999986

>3tbf_A Glucosamine--fructose-6-phosphate aminotransferas [isomerizing]; structural genomics; 2.28A {Francisella tularensis subsp}

Probab=98.90  E-value=8.6e-08  Score=87.39  Aligned_cols=154  Identities=10%  Similarity=0.043  Sum_probs=119.2

Q ss_pred             HHHHHHHHhcCChhHHHHHHHHHHcCCCeEEEEeccchHHHHHHHHHHHHhc-CCeeeecCCccccccccCCCCCCcEEE
Q 019775           28 QDHLNYFFQHLSLPHTLTFTQTLLKCRGTIFFTGVGKSGFVANKISQTLISL-GIKSGFLNPLDALHGDIGILSSDDILV  106 (336)
Q Consensus        28 ~~~l~~~~~~~~~~~i~~~~~~i~~a~~~I~i~G~G~s~~~a~~~~~~l~~~-g~~~~~~~~~~~~~~~~~~~~~~dlvi  106 (336)
                      .+.+++..+  ..+.++++++.+.++ +++|++|.|..+.+|.+.+.+|.++ .+++..++..+..+.....++++..+|
T Consensus       204 p~~~~~~l~--~~~~~~~~a~~~~~~-~~~~~lGrG~~~~~A~E~ALKlkE~s~i~ae~~~a~E~~HGP~alid~~~pvi  280 (372)
T 3tbf_A          204 RALVMGALK--LDTEIDQISEYFSDK-EHTIFLGRGLYYPIAIEGALKLKEISYIHAEAYPSGELKHGPLALVDKNMPIV  280 (372)
T ss_dssp             HHHHHHHHT--THHHHHHHHGGGTTC-CEEEEEECTTHHHHHHHHHHHHHHHHCCEEEEEEGGGTTTTTTTTCCTTCEEE
T ss_pred             HHHHHHHHh--ChHHHHHHHHHHhcc-CCEEEEecCcCHHHHHHHHHHHHHHhCcCcceeeHHHhcCccHhhcCCCCeEE
Confidence            334444442  245677888888888 6999999999999999999999987 888888888999999999999999999


Q ss_pred             EEeCCCCc-HHHHHHHHHHHHcCCeEEEEeCCCCCcc-ccccCEEEEcCCCcccCCCCCCChhHHHHHHHHHHHHHHHHH
Q 019775          107 MFSKSGNT-EELLKVVPCAKAKGAYLVSVTSVEGNAL-AAVCDMNVHLPVERELCPFDLAPVTSTAIQMVFGDTVAIAMM  184 (336)
Q Consensus       107 ~iS~sG~~-~~~~~~~~~ak~~g~~vi~IT~~~~s~l-~~~ad~~i~~~~~~~~~~~~~~~~~s~~~~~~l~d~l~~~~~  184 (336)
                      ++...+.. ..+...++..+.+|+++++||+.....+ ...+|.++.+|...        ...+.+.....+.+|...+.
T Consensus       281 ~~~~~d~~~~k~~~~~~e~~~rg~~vi~i~~~~~~~~~~~~~~~~i~~p~~~--------~~l~pl~~~i~~Qlla~~~A  352 (372)
T 3tbf_A          281 AVVPNDELLDKTLSNLQEVHARGGKLILFVDKAVKERVNFDNSIVLELDAGH--------DFSAPVVFTIPLQLLSYHVA  352 (372)
T ss_dssp             EEECSSTTHHHHHHHHHHHHHTTCEEEEEEEGGGGGGCCCTTCEEEEECCCS--------TTHHHHHHHHHHHHHHHHHH
T ss_pred             EEecCCchHHHHHHHHHHHHHcCCeEEEEECCCcccccccccceEEECCCCc--------hhHhHHHHHHHHHHHHHHHH
Confidence            98766654 5577889999999999999998643133 35678888887432        23355556677888888888


Q ss_pred             hhcCCChH
Q 019775          185 GARNLTRD  192 (336)
Q Consensus       185 ~~~~~~~~  192 (336)
                      ..+|.+++
T Consensus       353 ~~rG~d~D  360 (372)
T 3tbf_A          353 IIKGTDVD  360 (372)
T ss_dssp             HHHTCCCB
T ss_pred             HHcCcCcC
Confidence            88776654

>1zzg_A Glucose-6-phosphate isomerase; structural genomics, riken structural genomics/PR initiative, RSGI, NPPSFA; 1.95A {Thermus thermophilus}

Probab=98.83  E-value=2.9e-09  Score=97.47  Aligned_cols=107  Identities=18%  Similarity=0.239  Sum_probs=87.3

Q ss_pred             hHHHHHHHHHH-cCCCeEEEEeccchHHHHHHHHHHHHhcCCeeeecC--CccccccccCCCCC-CcEEEEEeCCCCcHH
Q 019775           41 PHTLTFTQTLL-KCRGTIFFTGVGKSGFVANKISQTLISLGIKSGFLN--PLDALHGDIGILSS-DDILVMFSKSGNTEE  116 (336)
Q Consensus        41 ~~i~~~~~~i~-~a~~~I~i~G~G~s~~~a~~~~~~l~~~g~~~~~~~--~~~~~~~~~~~~~~-~dlvi~iS~sG~~~~  116 (336)
                      +.++++++. . +. ++|+++|.|.|+.-+..+...|...+.+++++.  +.+.+......+++ +.++|++|.||.|.|
T Consensus        54 ~~i~~i~~~-~~~~-~~Vv~iGIGGS~LG~~~~~~aL~~~~~~~~~~~n~dp~~~~~~l~~l~~~~TlviviSKSGtT~E  131 (415)
T 1zzg_A           54 REVRRYREA-NPWV-EDFVLIGIGGSALGPKALEAAFNESGVRFHYLDHVEPEPILRLLRTLDPRKTLVNAVSKSGSTAE  131 (415)
T ss_dssp             HHHHHHHHT-CTTC-SEEEEECCGGGTHHHHHHHHHHCCSCCEEEEECSCCHHHHHHHHHHSCGGGEEEEEEESSSCCHH
T ss_pred             HHHHHHHHH-hcCC-CEEEEEccCccHHHHHHHHHHHhcCCCceEEecCCCHHHHHHHHhhCCCCCEEEEEEeCCCCCHH
Confidence            467777777 4 34 699999999999999999888875456677776  55555555666744 559999999999999


Q ss_pred             HHHHHHHHHHc-----C----CeEEEEeCCCCCccccccCEE
Q 019775          117 LLKVVPCAKAK-----G----AYLVSVTSVEGNALAAVCDMN  149 (336)
Q Consensus       117 ~~~~~~~ak~~-----g----~~vi~IT~~~~s~l~~~ad~~  149 (336)
                      ++..++.+|++     |    .++|+||++.+++|.+.|+..
T Consensus       132 T~~~~~~ar~~l~~~~G~~~~~~~vavT~~~~s~L~~~a~~~  173 (415)
T 1zzg_A          132 TLAGLAVFLKWLKAHLGEDWRRHLVVTTDPKEGPLRAFAERE  173 (415)
T ss_dssp             HHHHHHHHHHHHHHHHGGGGGGGEEEEECSSSSHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcCccccCeEEEEeCCCCChHHHHHHHh
Confidence            99999999988     8    899999999999999998754

>1moq_A Glucosamine 6-phosphate synthase; glutamine amidotransferase; HET: GLP MES; 1.57A {Escherichia coli} SCOP: c.80.1.1 PDB: 1mor_A* 1mos_A*

Probab=98.83  E-value=1.2e-07  Score=86.43  Aligned_cols=144  Identities=14%  Similarity=0.148  Sum_probs=118.5

Q ss_pred             hHHHHHHHHHHcCCCeEEEEeccchHHHHHHHHHHHHhc-CCeeeecCCccccccccCCCCCCcEEEEEeCCCCc-HHHH
Q 019775           41 PHTLTFTQTLLKCRGTIFFTGVGKSGFVANKISQTLISL-GIKSGFLNPLDALHGDIGILSSDDILVMFSKSGNT-EELL  118 (336)
Q Consensus        41 ~~i~~~~~~i~~a~~~I~i~G~G~s~~~a~~~~~~l~~~-g~~~~~~~~~~~~~~~~~~~~~~dlvi~iS~sG~~-~~~~  118 (336)
                      +.++++++.+.++ ++++++|.|..+.+|.+.+.+|.++ .+++..++..+..+.....++++..+|++...|.. ..+.
T Consensus       212 ~~~~~~a~~~~~~-~~~~~lG~G~~~~~A~E~aLKl~E~~~i~ae~~~~~E~~HGp~~lv~~~~~vi~~~~~~~~~~~~~  290 (368)
T 1moq_A          212 KRIEALAEDFSDK-HHALFLGRGDQYPIALEGALKLKEISYIHAEAYAAGELKHGPLALIDADMPVIVVAPNNELLEKLK  290 (368)
T ss_dssp             THHHHHHHHHTTC-SEEEEEECGGGHHHHHHHHHHHHHHHCCEEEEEEGGGGGGTGGGGCSTTSCEEEESCCHHHHHHHH
T ss_pred             HHHHHHHHHHhCC-CcEEEEeCCCCHHHHHHHHHHHHHHhccccccccHHHhccCcHHHcCCCceEEEEEcCCchHHHHH
Confidence            5688899999888 5999999999999999999999988 88888888888888888899999999999888776 6788


Q ss_pred             HHHHHHHHcCCeEEEEeCCCCCccccccCEEEEcCCCcccCCCCCCChhHHHHHHHHHHHHHHHHHhhcCCChHH
Q 019775          119 KVVPCAKAKGAYLVSVTSVEGNALAAVCDMNVHLPVERELCPFDLAPVTSTAIQMVFGDTVAIAMMGARNLTRDE  193 (336)
Q Consensus       119 ~~~~~ak~~g~~vi~IT~~~~s~l~~~ad~~i~~~~~~~~~~~~~~~~~s~~~~~~l~d~l~~~~~~~~~~~~~~  193 (336)
                      +.++.++++|+++++|++.....+...+|..+.+|...+        ..+.+.....++++...+...+|.++++
T Consensus       291 ~~~~e~~~~g~~v~~i~~~~~~~~~~~~~~~i~~p~~~~--------~l~pl~~~v~~qlla~~~A~~~G~dpd~  357 (368)
T 1moq_A          291 SNIEEVRARGGQLYVFADQDAGFVSSDNMHIIEMPHVEE--------VIAPIFYTVPLQLLAYHVALIKGTDVDQ  357 (368)
T ss_dssp             HHHHHTGGGTCCEEEEEEGGGCCCCBTTEEEEEECCCCG--------GGHHHHHHHHHHHHHHHHHHHHTCCSSS
T ss_pred             HHHHHHHHcCCeEEEEECCCcchhcccCCceEEcCCCch--------hHHHHHHHHHHHHHHHHHHHHcCcCCCC
Confidence            889999999999999998755556677888887765322        2344555668888888888888766544

>2e5f_A Hypothetical protein PH0510; structural genomics, sugar binding protein, NPPSFA, national on protein structural and functional analyses; 1.35A {Pyrococcus horikoshii} PDB: 2dec_A* 2df8_A 2cb0_A*

Probab=98.81  E-value=1.9e-07  Score=83.64  Aligned_cols=148  Identities=18%  Similarity=0.153  Sum_probs=113.0

Q ss_pred             HHHHHHHHhcCChhHHHHHHHHHHcCCCeEEEEeccchHHHHHHHHHHHHhc-CCeeeecCCccccccccCCCCCCcEEE
Q 019775           28 QDHLNYFFQHLSLPHTLTFTQTLLKCRGTIFFTGVGKSGFVANKISQTLISL-GIKSGFLNPLDALHGDIGILSSDDILV  106 (336)
Q Consensus        28 ~~~l~~~~~~~~~~~i~~~~~~i~~a~~~I~i~G~G~s~~~a~~~~~~l~~~-g~~~~~~~~~~~~~~~~~~~~~~dlvi  106 (336)
                      .+.+++..+.  .+.++++++.+.+ + +++++|.|..+.+|.+.+.+|.++ .+++..+...+..+.....++++..+|
T Consensus       165 ~~~~~~~l~~--~~~~~~~a~~~~~-~-~~~~lG~G~~~~~A~E~aLKl~E~~~i~a~~~~~~E~~HGp~~li~~~~~vi  240 (325)
T 2e5f_A          165 SKATEKSLEY--ERYIREIVESFDF-Q-NIIFLGSGLLYPVALEASLKMKEMSIFWSEAYPTFEVRHGFKAIADEKTLVV  240 (325)
T ss_dssp             HHHHHHHHTT--HHHHHHHHHHCCC-S-EEEEEECTTHHHHHHHHHHHHHHHHCCEEEEEEGGGGGTTGGGGCSTTEEEE
T ss_pred             HHHHHHHHcC--hHHHHHHHHHhcC-C-CEEEEccCCCHHHHHHHHHHHHHHHHHHhhhcCHHHhhhccHhhcCCCCeEE
Confidence            3444444433  3568888888877 6 999999999999999999999988 777788888888888899999999999


Q ss_pred             EEeCCCCc-HHHHHHHHHHHHcCCeEEEEeCCCCCcccccc-CEEEEcCCCcccCCCCCCChhHHHHHHHHHHHHHHHHH
Q 019775          107 MFSKSGNT-EELLKVVPCAKAKGAYLVSVTSVEGNALAAVC-DMNVHLPVERELCPFDLAPVTSTAIQMVFGDTVAIAMM  184 (336)
Q Consensus       107 ~iS~sG~~-~~~~~~~~~ak~~g~~vi~IT~~~~s~l~~~a-d~~i~~~~~~~~~~~~~~~~~s~~~~~~l~d~l~~~~~  184 (336)
                      ++.  +.. +.+.+.++.++++|+++++|++...    ..+ |..+.+|...+    ...+    +...+.++++...+.
T Consensus       241 ~~~--~~~~~~~~~~~~e~~~~g~~v~~i~~~~~----~~~~~~~~~~p~~~~----~l~p----l~~~~~~qlla~~~a  306 (325)
T 2e5f_A          241 LMV--EEPFEWHEKLVKEFKNQGAKVLVISNSPQ----DLGQDYSIELPRLSK----DANP----IPYLPIVQLLSYYKA  306 (325)
T ss_dssp             EEE--SSCCHHHHHHHHHHHHTTCEEEEEESCCC----CCSCSEEEECCCCCT----TTTT----TTHHHHHHHHHHHHH
T ss_pred             EEe--CchHHHHHHHHHHHHHcCCeEEEEeCCcc----cccCCcEEEeCCCch----hHHH----HHHHHHHHHHHHHHH
Confidence            999  444 5589999999999999999997532    445 67777764322    1122    233477788888888


Q ss_pred             hhcCCChHH
Q 019775          185 GARNLTRDE  193 (336)
Q Consensus       185 ~~~~~~~~~  193 (336)
                      ..+|.++++
T Consensus       307 ~~~G~dpd~  315 (325)
T 2e5f_A          307 VSRGLNPDN  315 (325)
T ss_dssp             HHTTCCTTS
T ss_pred             HHcCCCCCC
Confidence            888876654

>2zj3_A Glucosamine--fructose-6-phosphate aminotransferase [isomerizing] 1; glucosamine-6-phosphate synthase, aldose/ketose isomerase, rossmann-like fold; HET: G6P; 1.90A {Homo sapiens} PDB: 2zj4_A* 2v4m_A*

Probab=98.80  E-value=2.1e-07  Score=85.05  Aligned_cols=153  Identities=10%  Similarity=0.066  Sum_probs=121.0

Q ss_pred             HHHHHHhcCChhHHHHHHHHHHcCCCeEEEEeccchHHHHHHHHHHHHhc-CCeeeecCCccccccccCCCCCCcEEEEE
Q 019775           30 HLNYFFQHLSLPHTLTFTQTLLKCRGTIFFTGVGKSGFVANKISQTLISL-GIKSGFLNPLDALHGDIGILSSDDILVMF  108 (336)
Q Consensus        30 ~l~~~~~~~~~~~i~~~~~~i~~a~~~I~i~G~G~s~~~a~~~~~~l~~~-g~~~~~~~~~~~~~~~~~~~~~~dlvi~i  108 (336)
                      .++...+.  .+.++++++.+.++ ++++++|.|.++.+|.+.+.+|.++ .+++..+...+..+.....++++..+|++
T Consensus       210 ~~~~~l~~--~~~~~~~a~~~~~~-~~~~~lG~G~~~~~A~E~aLKl~E~s~i~ae~~~~~E~~HGp~ali~~~~~vi~l  286 (375)
T 2zj3_A          210 LIKEVLSM--DDEIQKLATELYHQ-KSVLIMGRGYHYATCLEGALKIKEITYMHSEGILAGELKHGPLALVDKLMPVIMI  286 (375)
T ss_dssp             HHHHHHTT--HHHHHHHHHHHTTC-SEEEEEECGGGHHHHHHHHHHHHHHHCCEEEEEEGGGGGGTGGGGCSTTSCEEEE
T ss_pred             HHHHHHhh--hHHHHHHHHHHhCC-CCEEEEccCCCHHHHHHHHHHHHHHhhhccccccHHHhccCcHHHcCCCCeEEEE
Confidence            34444433  46788999999998 5999999999999999999999988 88888888888888889899999888888


Q ss_pred             eCCCCc-HHHHHHHHHHHHcCCeEEEEeCCCCCccccccCEEEEcCCCcccCCCCCCChhHHHHHHHHHHHHHHHHHhhc
Q 019775          109 SKSGNT-EELLKVVPCAKAKGAYLVSVTSVEGNALAAVCDMNVHLPVERELCPFDLAPVTSTAIQMVFGDTVAIAMMGAR  187 (336)
Q Consensus       109 S~sG~~-~~~~~~~~~ak~~g~~vi~IT~~~~s~l~~~ad~~i~~~~~~~~~~~~~~~~~s~~~~~~l~d~l~~~~~~~~  187 (336)
                      ...+.. ..+.+.++..+.+|+++++|++..+..+...+|.++.+|...+        ..+.+...+.++++...+...+
T Consensus       287 ~~~~~~~~~~~~~~~e~~~rg~~v~~i~~~~~~~~~~~~~~~i~~p~~~~--------~l~pl~~~v~~Qlla~~~A~~~  358 (375)
T 2zj3_A          287 IMRDHTYAKCQNALQQVVARQGRPVVICDKEDTETIKNTKRTIKVPHSVD--------CLQGILSVIPLQLLAFHLAVLR  358 (375)
T ss_dssp             ECSSTTHHHHHHHHHHHHHTTCCCEEEEETTCHHHHHHCSSEEEECCCCT--------TTHHHHHTHHHHHHHHHHHHHT
T ss_pred             ECCChhHHHHHHHHHHHHHcCCeEEEEECCCchhhhhccCcEEEcCCCch--------hHHHHHHHHHHHHHHHHHHHHc
Confidence            666654 6688999999999999999997654455556777888875322        2244455688899999999888


Q ss_pred             CCChHH
Q 019775          188 NLTRDE  193 (336)
Q Consensus       188 ~~~~~~  193 (336)
                      |.++++
T Consensus       359 G~dpd~  364 (375)
T 2zj3_A          359 GYDVDF  364 (375)
T ss_dssp             TCCSSS
T ss_pred             CCCCCC
Confidence            876653

>1vr9_A CBS domain protein/ACT domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE; 1.70A {Thermotoga maritima} SCOP: d.37.1.1

Probab=98.76  E-value=1.2e-08  Score=85.70  Aligned_cols=101  Identities=19%  Similarity=0.129  Sum_probs=53.9

Q ss_pred             hhhhccccCCCCccccCCCcHHHHHHHHHhcCcceEEEEcCCCcEEEEeeHHHHHHHHHhcCCchhhhhHhhhcCC-CCe
Q 019775          210 KVQDVMKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRRTLKASGEGIFKLTVGEMCNR-SPR  288 (336)
Q Consensus       210 ~v~~im~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~it~~dl~~~~~~~~~~~~~~~i~~~~~~-~~~  288 (336)
                      +++++|.+.  ++++++++++.+++++|.+++.+.+||+|++|+++|+||.+|++..+.....      ..+.+.+ .+.
T Consensus        73 ~v~~im~~~--~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGiit~~Dil~~~~~~~~------~~~~~~~l~~~  144 (213)
T 1vr9_A           73 SVFNKVSLP--DFFVHEEDNITHALLLFLEHQEPYLPVVDEEMRLKGAVSLHDFLEALIEALA------MDVPGIRFSVL  144 (213)
T ss_dssp             BSGGGCBCT--TCCEETTSBHHHHHHHHHHCCCSEEEEECTTCBEEEEEEHHHHHHHHHHSCC-----------------
T ss_pred             cHHHHccCC--CEEECCCCcHHHHHHHHHHhCCCEEEEEcCCCEEEEEEEHHHHHHHHHHHhc------CCCCcEEEEEE
Confidence            589999986  4599999999999999999999999999988999999999999987765321      1111111 011


Q ss_pred             eeCCCccHHHHHHHhcCCCCCccEeEEEeCCC
Q 019775          289 TIGPDAMAVEAMQKMESPPSPVQFLPVINRQN  320 (336)
Q Consensus       289 ~v~~~~~l~~~~~~~~~~~~~~~~l~Vv~~~~  320 (336)
                      ......++.++.+.|.++  +.+.++|++..|
T Consensus       145 ~~~~~~~l~~~~~~l~~~--~~~~l~V~~~~~  174 (213)
T 1vr9_A          145 LEDKPGELRKVVDALALS--NINILSVITTRS  174 (213)
T ss_dssp             --------------------------------
T ss_pred             eCCCCccHHHHHHHHHHC--CCcEEEEEEEec
Confidence            113334599999999999  999999885433

>2bpl_A Glucosamine--fructose-6-phosphate aminotransferase [isomerizing]; amidotransferase, ammonia channeling, glucosamine 6- phosphate synthase; HET: F6R; 2.05A {Escherichia coli} SCOP: c.80.1.1 d.153.1.1 PDB: 1jxa_A* 2j6h_A* 2vf4_X 2vf5_X* 3ooj_A*

Probab=98.71  E-value=8.4e-07  Score=86.13  Aligned_cols=145  Identities=13%  Similarity=0.129  Sum_probs=118.4

Q ss_pred             hhHHHHHHHHHHcCCCeEEEEeccchHHHHHHHHHHHHhc-CCeeeecCCccccccccCCCCCCcEEEEEeCCCCc-HHH
Q 019775           40 LPHTLTFTQTLLKCRGTIFFTGVGKSGFVANKISQTLISL-GIKSGFLNPLDALHGDIGILSSDDILVMFSKSGNT-EEL  117 (336)
Q Consensus        40 ~~~i~~~~~~i~~a~~~I~i~G~G~s~~~a~~~~~~l~~~-g~~~~~~~~~~~~~~~~~~~~~~dlvi~iS~sG~~-~~~  117 (336)
                      .+.+.++++.+.+. ++++++|.|..+.+|.+.+.+|.++ .+++..+...+..+.....++++..+|++...|.. +.+
T Consensus       451 ~~~~~~la~~l~~~-~~~~~lG~G~~~~~A~e~alKl~E~s~i~ae~~~a~e~~HGp~~lv~~~~~vi~i~~~~~~~~~~  529 (608)
T 2bpl_A          451 DKRIEALAEDFSDK-HHALFLGRGDQYPIALEGALKLKEISYIHAEAYAAGELKHGPLALIDADMPVIVVAPNNELLEKL  529 (608)
T ss_dssp             HHHHHHHHGGGTTC-CEEEEEECGGGHHHHHHHHHHHHHHHCCEEEEEEGGGGGGTGGGGCCTTCEEEEEECSSTTHHHH
T ss_pred             hHHHHHHHHHhhCC-CeEEEEecCcCHHHHHHHHHHHHHhccccceeecHHHhhhchHHHcCCCceEEEEECCChhHHHH
Confidence            35678888888788 5999999999999999999999988 78888888888888888889999999999888887 578


Q ss_pred             HHHHHHHHHcCCeEEEEeCCCCCccccccCEEEEcCCCcccCCCCCCChhHHHHHHHHHHHHHHHHHhhcCCChHH
Q 019775          118 LKVVPCAKAKGAYLVSVTSVEGNALAAVCDMNVHLPVERELCPFDLAPVTSTAIQMVFGDTVAIAMMGARNLTRDE  193 (336)
Q Consensus       118 ~~~~~~ak~~g~~vi~IT~~~~s~l~~~ad~~i~~~~~~~~~~~~~~~~~s~~~~~~l~d~l~~~~~~~~~~~~~~  193 (336)
                      .+.++.++++|+++++|++.....+...+|.++.+|...        ...+.+...+.++++...++..++.++++
T Consensus       530 ~~~~~e~~~rg~~v~~i~~~~~~~~~~~~~~~i~~p~~~--------~~l~pl~~~v~~Qlla~~~A~~~G~dpD~  597 (608)
T 2bpl_A          530 KSNIEEVRARGGQLYVFADQDAGFVSSDNMHIIEMPHVE--------EVIAPIFYTVPLQLLAYHVALIKGTDVDQ  597 (608)
T ss_dssp             HHHHHHHHHTTCEEEEEEETTSCCCCBTTEEEEEECCCC--------GGGHHHHHHHHHHHHHHHHHHHHTCCSSS
T ss_pred             HHHHHHHHHcCCeEEEEECCCchhhcccCCcEEEcCCCc--------chHHHHHHHHHHHHHHHHHHHHhCcCCCC
Confidence            999999999999999999864466777788888887432        23345556688899988888888766544

>3odp_A Putative tagatose-6-phosphate ketose/aldose isome; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE PG4; 2.35A {Clostridium novyi}

Probab=98.70  E-value=4.4e-07  Score=83.17  Aligned_cols=161  Identities=12%  Similarity=0.107  Sum_probs=117.6

Q ss_pred             HHHHHHHHHHhcCChhHHHHHHHHHHcCCCeEEEEeccchHHHHHHHHHHHHhcC---CeeeecCCccccccccCCCCCC
Q 019775           26 SQQDHLNYFFQHLSLPHTLTFTQTLLKCRGTIFFTGVGKSGFVANKISQTLISLG---IKSGFLNPLDALHGDIGILSSD  102 (336)
Q Consensus        26 ~~~~~l~~~~~~~~~~~i~~~~~~i~~a~~~I~i~G~G~s~~~a~~~~~~l~~~g---~~~~~~~~~~~~~~~~~~~~~~  102 (336)
                      ...+.+++..+.- .+.++++++.  ++ +++|++|.|.++.+|.+.+.+|.++-   ..+..++..+..+.....++++
T Consensus       206 ~lp~~~~~~l~~~-~~~~~~~a~~--~~-~~~~~lGrG~~~~~A~E~ALKlkE~s~g~i~a~~~~~~e~~HGP~alvd~~  281 (393)
T 3odp_A          206 SISMQGEKVLVNN-VELMKKIVGE--KF-KRTVYLGAANAFGLAKESALKVLELTAGKIATLYDTPLGFRHGPKSIIDDE  281 (393)
T ss_dssp             HHHHHHHHHHHHT-HHHHHHHHTT--CC-SEEEEECCTHHHHHHHHHHHHHHHHTTSSSEEEEECHHHHTTTGGGGCCTT
T ss_pred             HHHHHHHHHHHhh-HHHHHHHHhc--CC-CeEEEEeCCcCHHHHHHHHHHHHHHhhccchheeecHhhheeccccccCCC
Confidence            3344444444332 2345555554  67 69999999999999999999999874   6777888888888888899999


Q ss_pred             cEEEEEeCCCCc-HH-HHHHHHHHHHcC--CeEEEEeCCCCCccccccCEEEEcCCCcccCCCCCCChhHHHHHHHHHHH
Q 019775          103 DILVMFSKSGNT-EE-LLKVVPCAKAKG--AYLVSVTSVEGNALAAVCDMNVHLPVERELCPFDLAPVTSTAIQMVFGDT  178 (336)
Q Consensus       103 dlvi~iS~sG~~-~~-~~~~~~~ak~~g--~~vi~IT~~~~s~l~~~ad~~i~~~~~~~~~~~~~~~~~s~~~~~~l~d~  178 (336)
                      ..+|++...+.. +. -..+++.++.+|  +++++||+..+..+...+|.+|.+|....   .......+.+.....+.+
T Consensus       282 ~pvi~~~~~d~~t~~~~~~~~~ev~arg~~~~vi~i~~~~~~~~~~~~~~~i~~p~~~~---~~~~~~l~pi~~~ip~Ql  358 (393)
T 3odp_A          282 TLIVIFFSNDTYAREYEYDLLKEVYSQNGNHKVLAISEYEDKLIEDNSDYFIAINKEEQ---EYEDDSFLSLDYLLNAQM  358 (393)
T ss_dssp             EEEEEECCSSHHHHHHHHHHHHHHHHSSSCCEEEEEEEECCHHHHTTCSEEEEEESSCC---CCSSGGGGHHHHHHHHHH
T ss_pred             ceEEEEEcCCchhhHHHHHHHHHHHhcCCCceEEEEEcCCcchhccCCcEEEEeCCccc---cCCChHHhHHHHHHHHHH
Confidence            999999766653 21 246889999998  99999998766677778999998881100   001233455666778888


Q ss_pred             HHHHHHhhcCCChHH
Q 019775          179 VAIAMMGARNLTRDE  193 (336)
Q Consensus       179 l~~~~~~~~~~~~~~  193 (336)
                      |...++..+|.++++
T Consensus       359 lay~~A~~~G~dpD~  373 (393)
T 3odp_A          359 YAFINSMELGIGPDN  373 (393)
T ss_dssp             HHHHHHHHHTCCTTC
T ss_pred             HHHHHHHHcCCCCCC
Confidence            988898888877654

>2poc_A D-fructose-6- PH, isomerase domain of glutamine-fructose-6-phosphat transaminase (isomerizing); glucosamine-6-phosphate synthase; HET: BG6 UD1; 1.80A {Candida albicans} PDB: 2put_A* 2puv_A* 2puw_A*

Probab=98.67  E-value=7.3e-07  Score=81.17  Aligned_cols=153  Identities=8%  Similarity=0.093  Sum_probs=107.8

Q ss_pred             HHHHHHhcCChhHHHHHHHH-HHcCCCeEEEEeccchHHHHHHHHHHHHhc-CCeeeecCCccccccccCCCCCCcEEEE
Q 019775           30 HLNYFFQHLSLPHTLTFTQT-LLKCRGTIFFTGVGKSGFVANKISQTLISL-GIKSGFLNPLDALHGDIGILSSDDILVM  107 (336)
Q Consensus        30 ~l~~~~~~~~~~~i~~~~~~-i~~a~~~I~i~G~G~s~~~a~~~~~~l~~~-g~~~~~~~~~~~~~~~~~~~~~~dlvi~  107 (336)
                      .+++..+.  .+.++++++. +.+. ++++++|.|..+.+|.+.+.+|.++ .+++..+...+..+.....++++..+|+
T Consensus       200 ~~~~~l~~--~~~~~~~a~~~~~~~-~~~~~lG~G~~~~~A~e~alKl~E~s~i~ae~~~a~E~~HGp~~lv~~~~~vi~  276 (367)
T 2poc_A          200 QIKQVLKL--ENKIKDLCNSSLNDQ-KSLLLLGRGYQFATALEGALKIKEISYMHSEGVLAGELKHGILALVDEDLPIIA  276 (367)
T ss_dssp             HHHHHGGG--HHHHHHHHHSGGGGC-SEEEEEECGGGHHHHHHHHHHHHHHHCCEEEEEETTCC-----------CCEEE
T ss_pred             HHHHHHhc--hHHHHHHHHHHhccC-CcEEEEcCCCChHHHHHHHHHHHHHhccccccccHHHhccchHhhccCCCcEEE
Confidence            34444433  4567888888 8888 5999999999999999999999988 8888888888888888888888888888


Q ss_pred             EeCCCC-cHHHHHHHHHHHHcCCeEEEEeCCCCCccccccC-EEEEcCCCcccCCCCCCChhHHHHHHHHHHHHHHHHHh
Q 019775          108 FSKSGN-TEELLKVVPCAKAKGAYLVSVTSVEGNALAAVCD-MNVHLPVERELCPFDLAPVTSTAIQMVFGDTVAIAMMG  185 (336)
Q Consensus       108 iS~sG~-~~~~~~~~~~ak~~g~~vi~IT~~~~s~l~~~ad-~~i~~~~~~~~~~~~~~~~~s~~~~~~l~d~l~~~~~~  185 (336)
                      +...|. ...+.+.++..+.+|+++++|++..+..+...+| .++.+|...+        ..+.+...+.++++...+..
T Consensus       277 i~~~~~~~~~~~~~~~e~~~rg~~v~~i~~~~~~~~~~~~~~~~i~~p~~~~--------~l~pl~~~~~~Qlla~~~A~  348 (367)
T 2poc_A          277 FATRDSLFPKVMSAIEQVTARDGRPIVICNEGDAIISNDKVHTTLEVPETVD--------CLQGLLNVIPLQLISYWLAV  348 (367)
T ss_dssp             ECCGGGCCHHHHHHHHHHHHTTCCCEEEEETTCCSCC---CCEEEEECCCCG--------GGHHHHHHHHHHHHHHHHHH
T ss_pred             EEcCChhHHHHHHHHHHHHHcCCeEEEEECCCchhhhccCCccEEEeCCCch--------hHHHHHHHHHHHHHHHHHHH
Confidence            766555 4778999999999999999999765555666666 7788875322        23455566888999999998


Q ss_pred             hcCCChHH
Q 019775          186 ARNLTRDE  193 (336)
Q Consensus       186 ~~~~~~~~  193 (336)
                      .+|.++++
T Consensus       349 ~~G~dpd~  356 (367)
T 2poc_A          349 NRGIDVDF  356 (367)
T ss_dssp             HTTCCCC-
T ss_pred             HcCCCCCC
Confidence            88876654

>3knz_A Putative sugar binding protein; structural genomics, joint C structural genomics, JCSG, protein structure initiative; 2.50A {Salmonella enterica subsp}

Probab=98.61  E-value=4.5e-07  Score=82.39  Aligned_cols=138  Identities=9%  Similarity=0.040  Sum_probs=99.7

Q ss_pred             HHHHHHHHHHcCCCeEEEEeccchHHHHHHHHHHHHhc-CCeeeecCCccccccccCCCCCCcEEEEEeCCCCcHHHHHH
Q 019775           42 HTLTFTQTLLKCRGTIFFTGVGKSGFVANKISQTLISL-GIKSGFLNPLDALHGDIGILSSDDILVMFSKSGNTEELLKV  120 (336)
Q Consensus        42 ~i~~~~~~i~~a~~~I~i~G~G~s~~~a~~~~~~l~~~-g~~~~~~~~~~~~~~~~~~~~~~dlvi~iS~sG~~~~~~~~  120 (336)
                      .++++++.+.++ +++|++|.|..+.+|.+.+.+|.++ ++++..++..+..+.....++++..+|++...+. ....++
T Consensus       212 ~~~~~a~~~~~~-~~~~~lGrG~~~~~A~EgALKlkE~s~i~ae~~~a~E~~HGP~alid~~~pvi~~~~~~~-~~~~~~  289 (366)
T 3knz_A          212 WAQTNALALRDS-ADIRLTGPATLFGTVQEGALKMLETLRCPVSGYEFEEFIHGIYNAFNAQSALIMLDPQPD-ARQDRL  289 (366)
T ss_dssp             HHHHTHHHHHTC-SEEEEEECGGGHHHHHHHHHHHHHHHCSCEEEEEHHHHHHTHHHHCCTTEEEEEECSSCC-HHHHHH
T ss_pred             HHHHHHHHhcCC-CeEEEEeCCCCHHHHHHHHHHHHHHhcccceeechhhcCcCchhhhCCCceEEEEecCch-HHHHHH
Confidence            467777788888 6999999999999999999999987 8888888778888888888999999999876554 446788


Q ss_pred             HHHHHHcCCeEEEEeCCCCCccccccCEEEEcCCCcccCCCCCCChhHHHHHHHHHHHHHHHHHhhcCCChHH
Q 019775          121 VPCAKAKGAYLVSVTSVEGNALAAVCDMNVHLPVERELCPFDLAPVTSTAIQMVFGDTVAIAMMGARNLTRDE  193 (336)
Q Consensus       121 ~~~ak~~g~~vi~IT~~~~s~l~~~ad~~i~~~~~~~~~~~~~~~~~s~~~~~~l~d~l~~~~~~~~~~~~~~  193 (336)
                      ++.++++|+++++||+....     .+..+.+|....       ...+.+.....+.+|...+...+|.++++
T Consensus       290 ~~~l~~~g~~vi~i~~~~~~-----~~~~~~~p~~~~-------~~l~pl~~~v~~Qllay~~A~~rG~d~D~  350 (366)
T 3knz_A          290 AQILGEWTPSIYRIGPQVEN-----NGLNLNFPFVND-------EDFAVFEYIIPLQMLCAILPPQKGINPAI  350 (366)
T ss_dssp             HHHHHHHCSCEEEEESSSCC-----SSSSEECCCCCC-------TTTTHHHHHHHHHHHHHHCC---------
T ss_pred             HHHHHHcCCeEEEEecCCCc-----cceeEEeCCCCc-------hHHHHHHHHHHHHHHHHHHHHHhCcCCCC
Confidence            88999999999999986431     344455554322       12244455566788888888888776654

>4esy_A CBS domain containing membrane protein; structural genomics, PSI-biology; 2.01A {Sphaerobacter thermophilus}

Probab=98.59  E-value=5e-08  Score=78.80  Aligned_cols=57  Identities=16%  Similarity=0.309  Sum_probs=54.0

Q ss_pred             hhhHhhhcCCCCeeeCCCccHHHHHHHhcCCCCCccEeEEEeCCCcEEEEEehhhHhhc
Q 019775          276 KLTVGEMCNRSPRTIGPDAMAVEAMQKMESPPSPVQFLPVINRQNILIGIVTLHGLVSA  334 (336)
Q Consensus       276 ~~~i~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~l~Vv~~~~~~iGiit~~di~~~  334 (336)
                      ..++.++|.+++.++.+++++.++++.|.++  +...+||+|++|+++|+||..|+++.
T Consensus        17 ~~~V~diM~~~v~~v~~~~tl~~a~~~m~~~--~~~~~pVvd~~g~lvGiit~~Dll~~   73 (170)
T 4esy_A           17 QVPIRDILTSPVVTVREDDTLDAVAKTMLEH--QIGCAPVVDQNGHLVGIITESDFLRG   73 (170)
T ss_dssp             TSBGGGGCCSCCCCEETTSBHHHHHHHHHHT--TCSEEEEECTTSCEEEEEEGGGGGGG
T ss_pred             CCCHHHhcCCCCcEECCcCcHHHHHHHHHHc--CCeEEEEEcCCccEEEEEEHHHHHHH
Confidence            5789999999999999999999999999999  99999999999999999999999864

>3fj1_A Putative phosphosugar isomerase; YP_167080.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative; HET: MSE; 1.75A {Silicibacter pomeroyi dss-3}

Probab=98.58  E-value=6.6e-07  Score=80.65  Aligned_cols=137  Identities=16%  Similarity=0.138  Sum_probs=107.0

Q ss_pred             HHHHHHHHHcCCCeEEEEeccchHHHHHHHHHHHHhc-CCeeeecCCccccccccCCCCCCcEEEEEeCCCCc-HHHHHH
Q 019775           43 TLTFTQTLLKCRGTIFFTGVGKSGFVANKISQTLISL-GIKSGFLNPLDALHGDIGILSSDDILVMFSKSGNT-EELLKV  120 (336)
Q Consensus        43 i~~~~~~i~~a~~~I~i~G~G~s~~~a~~~~~~l~~~-g~~~~~~~~~~~~~~~~~~~~~~dlvi~iS~sG~~-~~~~~~  120 (336)
                      ++++++.+.++ +++|++|.|.++.+|.+.+.+|.++ .+++..++..+..+.....++++..+|++...+.+ +...++
T Consensus       195 ~~~~a~~~~~~-~~~~~lG~G~~~~~A~E~ALKlkE~s~i~ae~~~~~E~~HGP~ali~~~~~vi~~~~~~~~~~~~~~~  273 (344)
T 3fj1_A          195 WPEMRVAIGAR-PSLFTLGRGTSLAVSNEAALKFKETCQLHAESYSSAEVLHGPVSIVEEGFPVLGFAAGDAAEAPLAEI  273 (344)
T ss_dssp             CHHHHHHHHHS-CCEEEEECGGGHHHHHHHHHHHHHHHCCCEEEEETTTGGGSSSCHHHHTCCEEECCCSSTTHHHHHHH
T ss_pred             HHHHHHHHhCC-CcEEEEECCCCHHHHHHHHHHHHHHhccCceeecHHhhccchHhhhcCCceEEEEecCCchHHHHHHH
Confidence            56677788888 5999999999999999999999987 88888888899999999999999999999877776 447789


Q ss_pred             HHHHHHcCCeEEEEeCCCCCccccccCEEEEcCCCcccCCCCCCChhHHHHHHHHHHHHHHHHHhhcCCChHH
Q 019775          121 VPCAKAKGAYLVSVTSVEGNALAAVCDMNVHLPVERELCPFDLAPVTSTAIQMVFGDTVAIAMMGARNLTRDE  193 (336)
Q Consensus       121 ~~~ak~~g~~vi~IT~~~~s~l~~~ad~~i~~~~~~~~~~~~~~~~~s~~~~~~l~d~l~~~~~~~~~~~~~~  193 (336)
                      ++.++++|+++++|++....      +..+..+..       .....+.+.....+.+|...+...+|.++++
T Consensus       274 ~~e~~~~g~~v~~i~~~~~~------~~~i~~~~~-------~~~~~~pl~~~~~~Qlla~~~a~~~G~d~D~  333 (344)
T 3fj1_A          274 ADQIAAKGATVFATTGRVTR------ARVLEHVRS-------GHALTDPLSLIVSFYSMVEAFASERGIDPDA  333 (344)
T ss_dssp             HHHHHHTTCCEEESSTTCSS------SEECCCCCC-------SSTTTHHHHHHHHHHHHHHHHHHHTTCCCC-
T ss_pred             HHHHHHcCCeEEEEeCCCCC------cceEEeCCC-------CchhHHHHHHHHHHHHHHHHHHHHcCCCCCC
Confidence            99999999999999976432      222222111       1223355666777888888888888766554

>3i0z_A Putative tagatose-6-phosphate ketose/aldose isome; NP_344614.1, putative putative tagatose-6-phosphate ketose/A isomerase; HET: MSE; 1.70A {Streptococcus pneumoniae TIGR4}

Probab=98.57  E-value=1.6e-06  Score=79.32  Aligned_cols=156  Identities=10%  Similarity=0.142  Sum_probs=111.2

Q ss_pred             HHHHHHHHHHHhcCChhHHHHHHHHHHcCCCeEEEEeccchHHHHHHHHHHHHhcC---CeeeecCCccccccccCCCCC
Q 019775           25 KSQQDHLNYFFQHLSLPHTLTFTQTLLKCRGTIFFTGVGKSGFVANKISQTLISLG---IKSGFLNPLDALHGDIGILSS  101 (336)
Q Consensus        25 ~~~~~~l~~~~~~~~~~~i~~~~~~i~~a~~~I~i~G~G~s~~~a~~~~~~l~~~g---~~~~~~~~~~~~~~~~~~~~~  101 (336)
                      +...+.++++.+.  .+.++++++.  ++ +++|++|.|..+.+|.+.+.+|.++-   +++..++..+..+.....+++
T Consensus       206 ~~lp~~~~~~l~~--~~~i~~~a~~--~~-~~~~~lGrG~~y~~A~EgALKlkE~s~Gei~a~~~~~~e~kHGP~alid~  280 (389)
T 3i0z_A          206 EVVSSLARKVLDK--AEDVKELVDL--DF-NRVIYLGAGPFFGLAHEAQLKILELTAGQVATMYESPVGFRHGPKSLIND  280 (389)
T ss_dssp             HHHHHHHHHHHHT--HHHHHHHHTS--CC-SEEEEEESTHHHHHHHHHHHHHHHHHTTSSEEEEECHHHHTTTGGGGCCT
T ss_pred             HHHHHHHHHHHhC--hHHHHHHHhc--CC-CeEEEEcCCCCHHHHHHHHHHHHHHccCcccceeecHhhccccchhhcCC
Confidence            3344444444443  1345555554  66 69999999999999999999999884   788888888888888999999


Q ss_pred             CcEEEEEeCCCCcHH--HHHHHHHHHHc--CCeEEEEeCCCCCccccccCEEEEcCCCcccCCCCCCChhHHHHHHHHHH
Q 019775          102 DDILVMFSKSGNTEE--LLKVVPCAKAK--GAYLVSVTSVEGNALAAVCDMNVHLPVERELCPFDLAPVTSTAIQMVFGD  177 (336)
Q Consensus       102 ~dlvi~iS~sG~~~~--~~~~~~~ak~~--g~~vi~IT~~~~s~l~~~ad~~i~~~~~~~~~~~~~~~~~s~~~~~~l~d  177 (336)
                      +..+|++...+....  ...+++..+.+  |+++++||+. +..+...+|+.+..+...       ....+.+.....+.
T Consensus       281 ~~pVi~~~~~d~~~~~~~~~~~~ev~arg~g~~vi~i~~~-~~~~~~~~~~~i~~~~~~-------~~~l~pl~~~vp~Q  352 (389)
T 3i0z_A          281 NTVVLVFGTTTDYTRKYDLDLVREVAGDQIARRVVLLSDQ-AFGLENVKEVALGCGGVL-------NDIYRVFPYIVYAQ  352 (389)
T ss_dssp             TEEEEEECCCSHHHHHHHHHHHHHHHHHTCSSEEEEEESS-CCCCTTCEEEECCCSSCS-------CGGGGHHHHHHHHH
T ss_pred             CceEEEEEcCCchhhHHHHHHHHHHHhccCCCeEEEEECC-CcccccCceEEecCCCCc-------chHHHHHHHHHHHH
Confidence            999999987665422  35678999988  7999999985 334444444443332111       22335566678889


Q ss_pred             HHHHHHHhhcCCChHH
Q 019775          178 TVAIAMMGARNLTRDE  193 (336)
Q Consensus       178 ~l~~~~~~~~~~~~~~  193 (336)
                      +|...++..+|.++++
T Consensus       353 llAy~~A~~rG~dpD~  368 (389)
T 3i0z_A          353 LFALLTSLKVENKPDT  368 (389)
T ss_dssp             HHHHHHHHHTTCCTTS
T ss_pred             HHHHHHHHHcCCCCCC
Confidence            9999999998877654

>3hba_A Putative phosphosugar isomerase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE CIT; 2.00A {Shewanella denitrificans OS217}

Probab=98.56  E-value=6.1e-07  Score=80.49  Aligned_cols=125  Identities=14%  Similarity=0.152  Sum_probs=90.8

Q ss_pred             HHHHHHcCCCeEEEEeccchHHHHHHHHHHHHhc-CCeeeecCCccccccccCCCCCCcEEEEEeCCCCc-HHHHHHHHH
Q 019775           46 FTQTLLKCRGTIFFTGVGKSGFVANKISQTLISL-GIKSGFLNPLDALHGDIGILSSDDILVMFSKSGNT-EELLKVVPC  123 (336)
Q Consensus        46 ~~~~i~~a~~~I~i~G~G~s~~~a~~~~~~l~~~-g~~~~~~~~~~~~~~~~~~~~~~dlvi~iS~sG~~-~~~~~~~~~  123 (336)
                      +++.+.++ +++|++|.|..+.+|.+.+.+|.++ ++++..++..+..+.....++++..+|++...+.+ +.+.++++.
T Consensus       197 ~a~~~~~~-~~~~~lG~G~~~~~A~E~ALKlkE~~~i~ae~~~~~E~~HGP~alv~~~~~vi~~~~~~~~~~~~~~~~~e  275 (334)
T 3hba_A          197 RAGSLTDV-KNLVVLGRGFGYAVSKEIALKLKEVCAIHAEAFSSAEFLHGPVTLVEKKLSILDVCIRDESYGSHVEQIAN  275 (334)
T ss_dssp             CGGGTTTC-CEEEEEECTHHHHHHHHHHHHHHHHHCCEEEEEETTTCC-----------CEEEEECCSTTHHHHHHHHHH
T ss_pred             HHHHHhCC-CeEEEEeCCcCHHHHHHHHHHHHHHcCcceEEecHHhhccchHHhcCCCceEEEEecCchhHHHHHHHHHH
Confidence            34445566 6999999999999999999999987 88888888888899999999999999998877776 457789999


Q ss_pred             HHHcCCeEEEEeCCCCCccccccCEEEEcCCCcccCCCCCCChhHHHHHHHHHHHHHHHHHhhcCCChHH
Q 019775          124 AKAKGAYLVSVTSVEGNALAAVCDMNVHLPVERELCPFDLAPVTSTAIQMVFGDTVAIAMMGARNLTRDE  193 (336)
Q Consensus       124 ak~~g~~vi~IT~~~~s~l~~~ad~~i~~~~~~~~~~~~~~~~~s~~~~~~l~d~l~~~~~~~~~~~~~~  193 (336)
                      ++++|+++++|++..              +..        ....+.+.....+.++...+...+|.++++
T Consensus       276 ~~~~g~~v~~i~~~~--------------~~~--------~~~l~pl~~~v~~Qlla~~~A~~rG~d~D~  323 (334)
T 3hba_A          276 VKQRGANLIHLHQTS--------------ADI--------HPRIAPLALLQRFYIDVAAVAIALGINPDK  323 (334)
T ss_dssp             HHHTTCCEEEEECSC--------------TTS--------CTTTHHHHHHHHHHHHHHHHHHHTTCCTTC
T ss_pred             HHHcCCeEEEEECCC--------------CCc--------chhHhhHHHHHHHHHHHHHHHHHhCcCCCC
Confidence            999999999999753              221        123355666778888989999888876654

>3g68_A Putative phosphosugar isomerase; SIS domain, double-SIS DOMA protein, structural genomics, joint center for structural G JCSG; HET: MSE CIT; 1.80A {Clostridium difficile}

Probab=98.54  E-value=8.4e-07  Score=80.21  Aligned_cols=138  Identities=12%  Similarity=0.070  Sum_probs=104.0

Q ss_pred             HHHHHHHHHHcCCCeEEEEeccchHHHHHHHHHHHHhc-CCeeeecCCccccccccCCCCCCcEEEEEeCCCCcHHHHHH
Q 019775           42 HTLTFTQTLLKCRGTIFFTGVGKSGFVANKISQTLISL-GIKSGFLNPLDALHGDIGILSSDDILVMFSKSGNTEELLKV  120 (336)
Q Consensus        42 ~i~~~~~~i~~a~~~I~i~G~G~s~~~a~~~~~~l~~~-g~~~~~~~~~~~~~~~~~~~~~~dlvi~iS~sG~~~~~~~~  120 (336)
                      .++++++.+.++ +++|++|.|..+.+|.+.+.+|.+. ..++..++..+..+.....++++..+|++...+++. ..++
T Consensus       197 ~~~~~a~~~~~~-~~~~~lGrG~~~~~A~E~ALKlkE~s~i~ae~~~a~E~~HGP~alid~~~pvi~~~~~~~~~-~~~~  274 (352)
T 3g68_A          197 WIERNKEKLVNS-KEIRIIGHSDIYGDTLEAALKLLETMRIPVTGYEFEEFIHGIYNAINSDSTIFILDTGKEPR-VTKM  274 (352)
T ss_dssp             HHHHTHHHHHTC-CEEEEEECGGGHHHHHHHHHHHHHHHCSCEEEEEHHHHHTTGGGGCCTTEEEEEEECSCCTT-HHHH
T ss_pred             HHHHHHHHHhCC-CcEEEEeCCCCHHHHHHHHHHHHHHhcccccccchhhccccchheeCCCceEEEEECCchHH-HHHH
Confidence            466677777788 6999999999999999999999987 788887877888888899999999999987655443 5677


Q ss_pred             HHHHHHcCCeEEEEeCCCCCccccccCEEEEcCCCcccCCCCCCChhHHHHHHHHHHHHHHHHHhhcCCChHH
Q 019775          121 VPCAKAKGAYLVSVTSVEGNALAAVCDMNVHLPVERELCPFDLAPVTSTAIQMVFGDTVAIAMMGARNLTRDE  193 (336)
Q Consensus       121 ~~~ak~~g~~vi~IT~~~~s~l~~~ad~~i~~~~~~~~~~~~~~~~~s~~~~~~l~d~l~~~~~~~~~~~~~~  193 (336)
                      ++.++++|+++++|++....     .+..+.+|....       ...+.+.....+.+|...+...+|.++++
T Consensus       275 ~~~~~~~g~~v~~i~~~~~~-----~~~~~~~p~~~~-------~~~~pl~~~v~~Qlla~~~A~~~G~d~D~  335 (352)
T 3g68_A          275 IDVLSGWTENVFAIGRDVTE-----NDKNLKIDITDN-------PYYQTFNFIVPIQLICGEIPTLRGVDPSV  335 (352)
T ss_dssp             HHHHHTTCSCEEEEESSCCC-----STTCEECCCCSC-------TTGGGGTTTHHHHHHHHHSGGGGTCCTTS
T ss_pred             HHHHHHcCCeEEEEecCCCC-----CceeEEeCCCCc-------hhHhHHHHHHHHHHHHHHHHHHhCcCCCC
Confidence            88899999999999986431     344455554322       11233334466788888888888776654

>3fkj_A Putative phosphosugar isomerases; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 2.12A {Salmonella typhimurium LT2}

Probab=98.50  E-value=9.3e-06  Score=73.17  Aligned_cols=150  Identities=17%  Similarity=0.160  Sum_probs=112.7

Q ss_pred             HHHHHHHHHhcCChhHHHHHHHHHHcCCCeEEEEeccchHHHHHHHH-HHHHhc-CCeeeecCCccccccccCCCCCCcE
Q 019775           27 QQDHLNYFFQHLSLPHTLTFTQTLLKCRGTIFFTGVGKSGFVANKIS-QTLISL-GIKSGFLNPLDALHGDIGILSSDDI  104 (336)
Q Consensus        27 ~~~~l~~~~~~~~~~~i~~~~~~i~~a~~~I~i~G~G~s~~~a~~~~-~~l~~~-g~~~~~~~~~~~~~~~~~~~~~~dl  104 (336)
                      ..+.+++..+.. .+.++++++.+.++ +++|++|.|..+.+|.+.+ .+|.++ ++++..++..+..+.....++++..
T Consensus       186 lp~~~~~~l~~~-~~~~~~~a~~~~~~-~~~~~lGrG~~~~~A~E~A~LKlkE~s~i~ae~~~a~E~~HGP~ali~~~~p  263 (347)
T 3fkj_A          186 FSDVVHGAQRQV-QEDAQRFAAEWKDE-KVVYMMGSGPSFGAAHQESICILLEMQWINSASIHSGEYFHGPFEITEPGTP  263 (347)
T ss_dssp             HHHHHHHHHHHT-HHHHHHHHHHHTTC-SEEEEEECGGGHHHHHHHHHHTHHHHHCCEEEEEETTGGGGTGGGGCCTTCE
T ss_pred             HHHHHHHHHHHh-HHHHHHHHHHHhCC-CcEEEEECCCCHHHHHHHHHHHHHHHcCcCcceeeHHHhcCCcccccCCCce
Confidence            344444444433 25778888888888 5999999999999999998 788887 8999999889999999999999999


Q ss_pred             EEEEeCCCCcHH-HHHHHHHHHHcCCeEEEEeCCCCCccccccCEEEEcCCCcccCCCCCCChhHHHHHHHHHHHHHHHH
Q 019775          105 LVMFSKSGNTEE-LLKVVPCAKAKGAYLVSVTSVEGNALAAVCDMNVHLPVERELCPFDLAPVTSTAIQMVFGDTVAIAM  183 (336)
Q Consensus       105 vi~iS~sG~~~~-~~~~~~~ak~~g~~vi~IT~~~~s~l~~~ad~~i~~~~~~~~~~~~~~~~~s~~~~~~l~d~l~~~~  183 (336)
                      +|++...+.+.+ ..++++.+++.|+++++|+.... .+   ..    ++       .......+.+.....+.+|...+
T Consensus       264 vi~~~~~d~~~~~~~~~~~~~~~~g~~v~~i~~~~~-~~---~~----~~-------~~~~~~l~pl~~~v~~Qlla~~~  328 (347)
T 3fkj_A          264 FILLQSSGRTRPLDDRAIRFIERYQGKLQLIDADKL-GI---QD----LS-------TDVGEYFCGLLHNCVLDVYNLAL  328 (347)
T ss_dssp             EEEEECSSTTHHHHHHHHHHHHHTTCEEEEEEGGGG-TS---TT----TC-------TTTGGGGHHHHHHHHHHHHHHHH
T ss_pred             EEEEecCCchHHHHHHHHHHHHHhCCeEEEEeCCcc-cc---cc----CC-------CCcchhHHHHHHHHHHHHHHHHH
Confidence            999988777754 44677888889999999975321 11   11    11       11133445666778889999999


Q ss_pred             HhhcCCChHH
Q 019775          184 MGARNLTRDE  193 (336)
Q Consensus       184 ~~~~~~~~~~  193 (336)
                      ...++.++++
T Consensus       329 A~~~G~d~D~  338 (347)
T 3fkj_A          329 ATARNHPLTT  338 (347)
T ss_dssp             HHHTTCCTTC
T ss_pred             HHHhCcCCCC
Confidence            9888877654

>2aml_A SIS domain protein; 46906266, LMO0035 protein, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=98.50  E-value=2.7e-06  Score=77.56  Aligned_cols=139  Identities=9%  Similarity=0.071  Sum_probs=107.4

Q ss_pred             HHHHHHHHHHcCCCeEEEEeccchHHHHHHHHHHHHhc-CCeeeecCCccccccccCCCCCCcEEEEEeCCCCc-HHHHH
Q 019775           42 HTLTFTQTLLKCRGTIFFTGVGKSGFVANKISQTLISL-GIKSGFLNPLDALHGDIGILSSDDILVMFSKSGNT-EELLK  119 (336)
Q Consensus        42 ~i~~~~~~i~~a~~~I~i~G~G~s~~~a~~~~~~l~~~-g~~~~~~~~~~~~~~~~~~~~~~dlvi~iS~sG~~-~~~~~  119 (336)
                      .++++++.+.++ ++++++|.|..+.+|.+.+.+|.+. .+++..+...+..+.....++++..+|++...+.. ..+..
T Consensus       213 ~~~~~a~~~~~~-~~~~~lG~G~~~~~A~E~aLKl~E~s~i~a~~~~~~E~~HGp~ali~~~~~vi~l~~~~~~~~~~~~  291 (373)
T 2aml_A          213 FYERWQEEFATA-PKFTAIGYGPTVGTCKEFETKFSETVRVPSQGLDLEAFMHGPYLEVNPQHRIFFLETASAVTERLVL  291 (373)
T ss_dssp             HHHHHHHHHTTC-CCEEEEECTTHHHHHHHHHHHHHHHTCSCEEEEEHHHHTTTGGGGCCTTCEEEEEECCSTTHHHHHH
T ss_pred             HHHHHHHHHhCC-CcEEEEeCCCCHHHHHHHHHHHHHHhhhhceeccHHHhccccHHhcCCCCeEEEEECCCchHHHHHH
Confidence            567788888888 5999999999999999999999987 77777787888888888889999998888766654 56788


Q ss_pred             HHHHHHHcCCeEEEEeCCCCCccccccCEEEEcCCCcccCCCCCCChhHHHHHHHHHHHHHHHHHhhcCCChHH
Q 019775          120 VVPCAKAKGAYLVSVTSVEGNALAAVCDMNVHLPVERELCPFDLAPVTSTAIQMVFGDTVAIAMMGARNLTRDE  193 (336)
Q Consensus       120 ~~~~ak~~g~~vi~IT~~~~s~l~~~ad~~i~~~~~~~~~~~~~~~~~s~~~~~~l~d~l~~~~~~~~~~~~~~  193 (336)
                      +++.++++|+++++|++..   + . .+..+.+|....       ...+.+.....++++...+...+|.++++
T Consensus       292 ~~~~~~~~g~~v~~i~~~~---~-~-~~~~i~ip~~~~-------~~l~pl~~~v~~Qlla~~~A~~~G~dpd~  353 (373)
T 2aml_A          292 LRDYESKYTPFTYTVKFGK---G-E-DDRTLVIPTDLD-------EYQAPFLMILPFQILAHHIAELKGNKLTE  353 (373)
T ss_dssp             HHHHHTTTCSCEEEEEESC---C-S-STTEEEECSCCC-------TTTTHHHHTHHHHHHHHHHHHHTTCCTTS
T ss_pred             HHHHHHHcCCcEEEEECCC---C-C-CCcEEEcCCCCc-------chHHHHHHHHHHHHHHHHHHHHhCcCCCC
Confidence            8899999999999999753   2 2 234566663222       12233444568888988898888866544

>3ghd_A A cystathionine beta-synthase domain protein FUSE ribbon-like domain; PF1953,APC40009,cystathionine beta-synthase domain protein; 1.81A {Pyrococcus furiosus}

Probab=98.44  E-value=2.5e-07  Score=62.91  Aligned_cols=44  Identities=11%  Similarity=0.212  Sum_probs=41.2

Q ss_pred             CeeeCCCccHHHHHHHhcCCCCCccEeEEEeCCCcEEEEEehhhHhh
Q 019775          287 PRTIGPDAMAVEAMQKMESPPSPVQFLPVINRQNILIGIVTLHGLVS  333 (336)
Q Consensus       287 ~~~v~~~~~l~~~~~~~~~~~~~~~~l~Vv~~~~~~iGiit~~di~~  333 (336)
                      +.++.+++++.+|++.|.++  +...+||+|+ |+++|++|..|+++
T Consensus         2 ~vtv~p~~tv~ea~~~M~~~--~i~~~~V~d~-~~lvGIvT~~Di~~   45 (70)
T 3ghd_A            2 AIVVQPKDTVDRVAKILSRN--KAGSAVVMEG-DEILGVVTERDILD   45 (70)
T ss_dssp             EEEECTTCBHHHHHHHHHHT--TCSEEEEEET-TEEEEEEEHHHHHH
T ss_pred             CEEECCCCcHHHHHHHHHHc--CCCEEEEEEC-CEEEEEEEHHHHHH
Confidence            46899999999999999999  9999999986 99999999999975

>1j5x_A Glucosamine-6-phosphate deaminase; structural genomics, TM0813, glucosamine-6-phosphate deamina PSI, protein structure initiative; 1.80A {Thermotoga maritima} SCOP: c.80.1.1

Probab=98.42  E-value=2.9e-06  Score=76.41  Aligned_cols=130  Identities=15%  Similarity=0.136  Sum_probs=100.9

Q ss_pred             HHHHH-HHHHcCCCeEEEEeccchHHHHHHHHHHHHhc-CCeeeecCCccccccccCCCCCCcEEEEEeCCCCcHHHHHH
Q 019775           43 TLTFT-QTLLKCRGTIFFTGVGKSGFVANKISQTLISL-GIKSGFLNPLDALHGDIGILSSDDILVMFSKSGNTEELLKV  120 (336)
Q Consensus        43 i~~~~-~~i~~a~~~I~i~G~G~s~~~a~~~~~~l~~~-g~~~~~~~~~~~~~~~~~~~~~~dlvi~iS~sG~~~~~~~~  120 (336)
                      +.+++ +.+.++ ++++++|.|..+.+|.+.+.+|.++ .+++..+...+..+.....++++..+|++...|.-+.+.++
T Consensus       201 ~~~~a~~~l~~~-~~~~~lG~G~~~~~A~e~aLKl~E~s~i~a~~~~~~E~~HGp~~~v~~~~~vi~~~~~~~~~~~~~~  279 (342)
T 1j5x_A          201 WKVIEKIDLKEH-DHFVFLGMSEFFGVSLESALKCIEMSLTFSEAYSTLEYRHGPKALVKKGTLVFMQKVSGMDEQEKRL  279 (342)
T ss_dssp             HHHHHTSCGGGC-CEEEEECCTHHHHHHHHHHHHHHHHHCCEEEEECGGGGGTTGGGGCCTTEEEEEECCTTCHHHHHHH
T ss_pred             HHHHHHHHhcCC-CeEEEEcCCCCHHHHHHHHHHHHHHhhhheeeccHHHhcCCchhhhCCCceEEEEECCchHHHHHHH
Confidence            66666 666777 5999999999999999999999987 78888888888888889899999999999888833468889


Q ss_pred             HHHHHHcCCeEEEEeCCCCCccccccCEEEEcCCCcccCCCCCCChhHHHHHHHHHHHHHHHHHhhcCCChHH
Q 019775          121 VPCAKAKGAYLVSVTSVEGNALAAVCDMNVHLPVERELCPFDLAPVTSTAIQMVFGDTVAIAMMGARNLTRDE  193 (336)
Q Consensus       121 ~~~ak~~g~~vi~IT~~~~s~l~~~ad~~i~~~~~~~~~~~~~~~~~s~~~~~~l~d~l~~~~~~~~~~~~~~  193 (336)
                      ++.++++|+++++|++..          .+.+| .        . ..+.+.....++++...+...+|.++++
T Consensus       280 ~~~~~~~g~~v~~i~~~~----------~i~~p-~--------~-~l~pl~~~v~~qlla~~~A~~~G~dpd~  332 (342)
T 1j5x_A          280 RKELESLGATVLEVGEGG----------DIPVS-N--------D-WKSAFLRTVPAQILGYQKAISRGISPDK  332 (342)
T ss_dssp             HHHHHHTTCEEEEESTTS----------SBCCC-C--------S-GGGGGGTTHHHHHHHHHHHHHHTCCTTS
T ss_pred             HHHHHHcCCeEEEEecCC----------eEeec-H--------H-HHHHHHHHHHHHHHHHHHHHHhCcCCCC
Confidence            999999999999999752          12333 1        1 1122333457788888888888776654

>1b0z_A Protein (phosphoglucose isomerase); autocrinefactor, neuroleukin, crystallography motility; 2.30A {Geobacillus stearothermophilus} SCOP: c.80.1.2 PDB: 1c7q_A* 1c7r_A* 2pgi_A

Probab=98.40  E-value=3.7e-07  Score=84.35  Aligned_cols=113  Identities=18%  Similarity=0.162  Sum_probs=85.7

Q ss_pred             hHHHHHHHHHH-cCCCeEEEEeccchHHHHHHHHHHHHhcC-------Ceeeec-C--CccccccccCCC-CCCcEEEEE
Q 019775           41 PHTLTFTQTLL-KCRGTIFFTGVGKSGFVANKISQTLISLG-------IKSGFL-N--PLDALHGDIGIL-SSDDILVMF  108 (336)
Q Consensus        41 ~~i~~~~~~i~-~a~~~I~i~G~G~s~~~a~~~~~~l~~~g-------~~~~~~-~--~~~~~~~~~~~~-~~~dlvi~i  108 (336)
                      +.++++++.+. +. +.|+++|.|.|+.-+..+...|....       .+++++ .  +...+......+ .++.++|++
T Consensus        59 ~~i~~~a~~v~~~~-~~VV~IGIGGS~LG~~~v~~aL~~~~~~~~~~~~~~~fv~~NvDp~~i~~~l~~l~~~~Tlvivi  137 (445)
T 1b0z_A           59 SRIKQAAERIRNHS-DALVVIGIGGSYLGARAAIEALSHTFHNQMNDTTQIYFAGQNISSTYISHLLDVLEGKDLSINVI  137 (445)
T ss_dssp             HHHHHHHHHHHHHC-SEEEEECCGGGTHHHHHHHHHHSCTTGGGSTTSCEEEEESSSCCHHHHHHHHHHHTTCCEEEEEE
T ss_pred             HHHHHHHHHHHhcC-CEEEEEecChhHHHHHHHHHHHhhhcccccccCCceEEEeCCCCHHHHHHHHhhCCcCcEEEEEE
Confidence            35666666664 35 69999999999988888888776542       566666 3  334445445555 567899999


Q ss_pred             eCCCCcHHHHHHHHHHHH-----cC-----CeEEEEeCCCCCccccccCEE----EEcCC
Q 019775          109 SKSGNTEELLKVVPCAKA-----KG-----AYLVSVTSVEGNALAAVCDMN----VHLPV  154 (336)
Q Consensus       109 S~sG~~~~~~~~~~~ak~-----~g-----~~vi~IT~~~~s~l~~~ad~~----i~~~~  154 (336)
                      |.||.|.|++..++.+|+     .|     .++|+||++..++|.+.|+..    |.++.
T Consensus       138 SKSGtT~ET~~~~~~ar~~l~~~~G~~~~~~~~vavT~~~~g~L~~~a~~~Gi~~F~~~d  197 (445)
T 1b0z_A          138 SKSGTTTEPAIAFRIFRDYMEKKYGKEEARKRIYVTTDRTKGALKKLADQEGYETFVIPD  197 (445)
T ss_dssp             CSSSCCHHHHHHHHHHHHHHHHHHCHHHHGGGEEEEECSSCSHHHHHHHHHTCEEEECCT
T ss_pred             eCCCCCHHHHHHHHHHHHHHHHhcCchhhcCEEEEEecCCcchhHHHHHHhCCeEEeccC
Confidence            999999999999999997     37     789999999888998887643    45554

>3kpb_A Uncharacterized protein MJ0100; CBS domain, S-adenosylmethionine, conformational change, unknown function; HET: SAM; 1.60A {Methanocaldococcus jannaschii} SCOP: d.37.1.0 PDB: 3kpd_A* 3kpc_A*

Probab=98.39  E-value=7.3e-07  Score=67.39  Aligned_cols=58  Identities=14%  Similarity=0.324  Sum_probs=52.2

Q ss_pred             hhhhccccCCCCccccCCCcHHHHHHHHHhcCcceEEEEcCCCcEEEEeeHHHHHHHHHh
Q 019775          210 KVQDVMKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRRTLKA  269 (336)
Q Consensus       210 ~v~~im~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~it~~dl~~~~~~  269 (336)
                      +++++|.+.  ++++++++++.++++.|.+++.+.+||+|++|+++|+||.+|++..+..
T Consensus        63 ~v~~~~~~~--~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~~Givt~~dl~~~l~~  120 (122)
T 3kpb_A           63 TIEEIMTRN--VITAHEDEPVDHVAIKMSKYNISGVPVVDDYRRVVGIVTSEDISRLFGG  120 (122)
T ss_dssp             BGGGTSBSS--CCCEETTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHHHHHC-
T ss_pred             CHHHHhcCC--CeEECCCCCHHHHHHHHHHhCCCeEEEECCCCCEEEEEeHHHHHHHhhc
Confidence            688999876  4589999999999999999999999999988999999999999987653

>3gby_A Uncharacterized protein CT1051; CBS domain, structural genomics, PSI-2, protein structure initiative; HET: EPE; 1.66A {Chlorobium tepidum tls}

Probab=98.35  E-value=5.2e-07  Score=68.99  Aligned_cols=59  Identities=15%  Similarity=0.308  Sum_probs=53.2

Q ss_pred             hhhhhccccCCCCccccCCCcHHHHHHHHHhcCcceEEEEcCCCcEEEEeeHHHHHHHHHh
Q 019775          209 FKVQDVMKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRRTLKA  269 (336)
Q Consensus       209 ~~v~~im~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~it~~dl~~~~~~  269 (336)
                      .+++++|.+.  ++++++++++.++++.|.+++...+||+|++|+++|+||..|++..+.+
T Consensus        68 ~~v~~~m~~~--~~~v~~~~~l~~~~~~~~~~~~~~lpVvd~~g~~~Giit~~dll~~l~~  126 (128)
T 3gby_A           68 EKLGEELLET--VRSYRPGEQLFDNLISVAAAKCSVVPLADEDGRYEGVVSRKRILGFLAE  126 (128)
T ss_dssp             CBCCGGGCBC--CCCBCTTSBGGGSHHHHHHCSSSEEEEECTTCBEEEEEEHHHHHHHHHT
T ss_pred             CcHHHHccCC--CcEECCCCCHHHHHHHHHhCCCcEEEEECCCCCEEEEEEHHHHHHHHHh
Confidence            3678999876  4589999999999999999999999999989999999999999987753

>3jtf_A Magnesium and cobalt efflux protein; CBS domain, CORC, AMP, structural genomics, PSI-2, protein S initiative; HET: MSE AMP; 2.00A {Bordetella parapertussis}

Probab=98.34  E-value=1.2e-06  Score=67.16  Aligned_cols=57  Identities=19%  Similarity=0.212  Sum_probs=50.6

Q ss_pred             hhhhccccCCCCccccCCCcHHHHHHHHHhcCcceEEEEcCCCcEEEEeeHHHHHHHHHh
Q 019775          210 KVQDVMKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRRTLKA  269 (336)
Q Consensus       210 ~v~~im~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~it~~dl~~~~~~  269 (336)
                      +++++|.+   .+++++++++.+++++|.+++...+||+|++|+++|+||.+|++..+..
T Consensus        70 ~v~~~m~~---~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~~g~~~Giit~~Dil~~l~g  126 (129)
T 3jtf_A           70 DIRSLVRP---AVFIPEVKRLNVLLREFRASRNHLAIVIDEHGGISGLVTMEDVLEQIVG  126 (129)
T ss_dssp             CGGGGCBC---CCEEETTCBHHHHHHHHHTSSCCEEEEECC-CCEEEEEEHHHHHHHHHH
T ss_pred             CHHHHhCC---CeEeCCCCcHHHHHHHHHhcCCeEEEEEeCCCCEEEEEEHHHHHHHHhC
Confidence            57888875   4589999999999999999999999999988999999999999988764

>3hf7_A Uncharacterized CBS-domain protein; CSB-domain PAIR, AMP, PSI, MCSG, STR genomics, midwest center for structural genomics; HET: AMP; 2.75A {Klebsiella pneumoniae subsp}

Probab=98.34  E-value=1.2e-06  Score=67.34  Aligned_cols=57  Identities=21%  Similarity=0.180  Sum_probs=51.5

Q ss_pred             hhhhhccccCCCCccccCCCcHHHHHHHHHhcCcceEEEEcCCCcEEEEeeHHHHHHHHH
Q 019775          209 FKVQDVMKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRRTLK  268 (336)
Q Consensus       209 ~~v~~im~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~it~~dl~~~~~  268 (336)
                      .+++++|.+   .+++++++++.++++.|.+++...+||+|++|+++|+||.+|++..+.
T Consensus        70 ~~v~~~m~~---~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~g~lvGiit~~Dil~~l~  126 (130)
T 3hf7_A           70 EIMLRAADE---IYFVPEGTPLSTQLVKFQRNKKKVGLVVDEYGDIQGLVTVEDILEEIV  126 (130)
T ss_dssp             HHHHHHSBC---CCEEETTCBHHHHHHHHHHHCCCEEEEECTTSCEEEEEEHHHHHHHHH
T ss_pred             hhHHHhccC---CeEeCCCCcHHHHHHHHHhcCCeEEEEEcCCCCEEEEeeHHHHHHHHh
Confidence            467889954   458999999999999999999999999998899999999999998875

>4gqw_A CBS domain-containing protein CBSX1, chloroplasti; thioredoxin, plant, protein binding; 2.20A {Arabidopsis thaliana}

Probab=98.33  E-value=9.1e-07  Score=69.49  Aligned_cols=59  Identities=27%  Similarity=0.294  Sum_probs=54.0

Q ss_pred             hhhhhccccCCCCccccCCCcHHHHHHHHHhcCcceEEEEcCCCcEEEEeeHHHHHHHHHh
Q 019775          209 FKVQDVMKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRRTLKA  269 (336)
Q Consensus       209 ~~v~~im~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~it~~dl~~~~~~  269 (336)
                      .+++++|.+.  ++++++++++.+++++|.+++.+.+||+|++|+++|+||.+|++..+..
T Consensus        85 ~~v~~~m~~~--~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~g~~~Giit~~dil~~~~~  143 (152)
T 4gqw_A           85 KLVGDLMTPA--PLVVEEKTNLEDAAKILLETKYRRLPVVDSDGKLVGIITRGNVVRAALQ  143 (152)
T ss_dssp             CBHHHHSEES--CCCEESSSBHHHHHHHHHHSSCCEEEEECTTSBEEEEEEHHHHHHHHHC
T ss_pred             ccHHHhcCCC--ceEECCCCcHHHHHHHHHHCCCCEEEEECCCCcEEEEEEHHHHHHHHHh
Confidence            4788999986  4589999999999999999999999999988999999999999998865

>4fry_A Putative signal-transduction protein with CBS DOM; CBS domain,ssgcid, structural genomics, niaid; HET: NAD AMP; 2.10A {Burkholderia ambifaria}

Probab=98.32  E-value=9.7e-07  Score=70.01  Aligned_cols=60  Identities=22%  Similarity=0.311  Sum_probs=54.1

Q ss_pred             hhhhhhccccCCCCccccCCCcHHHHHHHHHhcCcceEEEEcCCCcEEEEeeHHHHHHHHHhc
Q 019775          208 IFKVQDVMKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRRTLKAS  270 (336)
Q Consensus       208 ~~~v~~im~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~it~~dl~~~~~~~  270 (336)
                      ..+++++|.+.  ++++++++++.+++++|.+++++.+||+| +|+++|+||..||+..+...
T Consensus        77 ~~~v~~~m~~~--~~~v~~~~~l~~~~~~m~~~~~~~lpVvd-~g~~~Giit~~dil~~l~~~  136 (157)
T 4fry_A           77 ATRVEEIMTAK--VRYVEPSQSTDECMALMTEHRMRHLPVLD-GGKLIGLISIGDLVKSVIAD  136 (157)
T ss_dssp             SCBHHHHSBSS--CCCBCTTSBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHHHHTT
T ss_pred             ccCHHHHcCCC--CcEECCCCcHHHHHHHHHHcCCCEEEEEE-CCEEEEEEEHHHHHHHHHHH
Confidence            34788999986  45899999999999999999999999999 79999999999999998763

>3nqr_A Magnesium and cobalt efflux protein CORC; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: AMP; 2.00A {Salmonella typhimurium}

Probab=98.32  E-value=8.5e-07  Score=67.72  Aligned_cols=57  Identities=25%  Similarity=0.261  Sum_probs=50.5

Q ss_pred             hhhhhccccCCCCccccCCCcHHHHHHHHHhcCcceEEEEcCCCcEEEEeeHHHHHHHHH
Q 019775          209 FKVQDVMKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRRTLK  268 (336)
Q Consensus       209 ~~v~~im~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~it~~dl~~~~~  268 (336)
                      .+++++|.+   .+++++++++.++++.|.+++...+||+|++|+++|+||.+|++..+.
T Consensus        69 ~~v~~~m~~---~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~~~Giit~~dll~~l~  125 (127)
T 3nqr_A           69 FSMDKVLRT---AVVVPESKRVDRMLKEFRSQRYHMAIVIDEFGGVSGLVTIEDILELIV  125 (127)
T ss_dssp             CCHHHHCBC---CCEEETTCBHHHHHHHHHHTTCCEEEEECTTSCEEEEEEHHHHHHHC-
T ss_pred             CCHHHHcCC---CeEECCCCcHHHHHHHHHhcCCeEEEEEeCCCCEEEEEEHHHHHHHHh
Confidence            367889966   348999999999999999999999999998999999999999998654

>2ef7_A Hypothetical protein ST2348; CBS-domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.10A {Sulfolobus tokodaii} SCOP: d.37.1.1

Probab=98.32  E-value=1.2e-06  Score=67.28  Aligned_cols=59  Identities=22%  Similarity=0.294  Sum_probs=53.5

Q ss_pred             hhhhhccccCCCCccccCCCcHHHHHHHHHhcCcceEEEEcCCCcEEEEeeHHHHHHHHHh
Q 019775          209 FKVQDVMKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRRTLKA  269 (336)
Q Consensus       209 ~~v~~im~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~it~~dl~~~~~~  269 (336)
                      .+++++|.+.  ++++++++++.++++.|.+++.+.+||+|++|+++|+||..|+...+..
T Consensus        67 ~~v~~~~~~~--~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~g~~~Giit~~dll~~~~~  125 (133)
T 2ef7_A           67 TKAEEFMTAS--LITIREDSPITGALALMRQFNIRHLPVVDDKGNLKGIISIRDITRAIDD  125 (133)
T ss_dssp             CBGGGTSEEC--CCCEETTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHHH
T ss_pred             cCHHHHcCCC--CEEECCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEEHHHHHHHHHH
Confidence            4688999876  4589999999999999999999999999988999999999999988765

>2wu8_A Glucose-6-phosphate isomerase; gluconeogenesis, 5-phosphoarabinonate (PAB), PGI, cytoplasm, glycolysis; 2.25A {Mycobacterium tuberculosis}

Probab=98.32  E-value=9.5e-07  Score=83.21  Aligned_cols=113  Identities=20%  Similarity=0.197  Sum_probs=88.8

Q ss_pred             hHHHHHHHHHHc----------CCCeEEEEeccchHHHHHHHHHHHHhc---CCeeeecC--CccccccccCCC-CCCcE
Q 019775           41 PHTLTFTQTLLK----------CRGTIFFTGVGKSGFVANKISQTLISL---GIKSGFLN--PLDALHGDIGIL-SSDDI  104 (336)
Q Consensus        41 ~~i~~~~~~i~~----------a~~~I~i~G~G~s~~~a~~~~~~l~~~---g~~~~~~~--~~~~~~~~~~~~-~~~dl  104 (336)
                      +.++++++.+.+          - +.|+++|.|.|+.-...+...|...   +.++++++  +...+...+..+ .++.+
T Consensus       121 ~~i~~fa~~vr~g~~~g~~g~~i-~~VV~IGIGGS~LGp~~v~~aL~~~~~~~~~v~fvsNvDp~~~~~~l~~l~~e~TL  199 (549)
T 2wu8_A          121 DAMGAFTDRLRSGEWTGATGKRI-STVVNIGIGGSDLGPVMVYQALRHYADAGISARFVSNVDPADLIATLADLDPATTL  199 (549)
T ss_dssp             HHHHHHHHHHHHTCSBCSSSCBC-CEEEEECCGGGTHHHHHHHHHTGGGCCSSCEEEEECCSSHHHHHHHHTTCCGGGEE
T ss_pred             HHHHHHHHHHHhCCcccCCCCcc-ceEEEEeccchHHHHHHHHHHHHhhccCCCeEEEEccCCHHHHHHHHhcCCCCcEE
Confidence            366777777754          4 6999999999998888888888764   67888886  344445555555 45678


Q ss_pred             EEEEeCCCCcHHHHHHHHHHHHc-----C-----CeEEEEeCCCCCcccccc-C--EEEEcCCC
Q 019775          105 LVMFSKSGNTEELLKVVPCAKAK-----G-----AYLVSVTSVEGNALAAVC-D--MNVHLPVE  155 (336)
Q Consensus       105 vi~iS~sG~~~~~~~~~~~ak~~-----g-----~~vi~IT~~~~s~l~~~a-d--~~i~~~~~  155 (336)
                      +|++|.||.|.|++..++.+|+.     |     .++|+||++. +++.+.+ |  .+|.++..
T Consensus       200 vIViSKSGtT~ETl~na~~ar~~l~~~~G~~~~~~h~VAvT~~~-s~~~~~gid~~~~F~~~d~  262 (549)
T 2wu8_A          200 FIVASKTFSTLETLTNATAARRWLTDALGDAAVSRHFVAVSTNK-RLVDDFGINTDNMFGFWDW  262 (549)
T ss_dssp             EEEECSSSCCHHHHHHHHHHHHHHHHHHCGGGGGGTEEEECSCH-HHHHHHTCCGGGEECCCTT
T ss_pred             EEEEeCCCCCHhHHHHHHHHHHHHHHhcCcchhcCEEEEECCCc-HHHHhcCcccccEEEeeec
Confidence            99999999999999999999988     8     6899999875 6787777 5  77777654

>3i8n_A Uncharacterized protein VP2912; APC64273.1, vibrio parahaemolyticus RIMD 2210633, structural genomics, PSI-2; 2.15A {Vibrio parahaemolyticus}

Probab=98.32  E-value=9.5e-07  Score=67.74  Aligned_cols=57  Identities=21%  Similarity=0.266  Sum_probs=51.5

Q ss_pred             hhhhhccccCCCCccccCCCcHHHHHHHHHhcCcceEEEEcCCCcEEEEeeHHHHHHHHH
Q 019775          209 FKVQDVMKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRRTLK  268 (336)
Q Consensus       209 ~~v~~im~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~it~~dl~~~~~  268 (336)
                      .+++++|.+   ++++++++++.++++.|.+++...+||+|++|+++|+||.+|++..+.
T Consensus        72 ~~v~~~m~~---~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~g~~vGivt~~dil~~l~  128 (130)
T 3i8n_A           72 KQLGAVMRP---IQVVLNNTALPKVFDQMMTHRLQLALVVDEYGTVLGLVTLEDIFEHLV  128 (130)
T ss_dssp             SBHHHHSEE---CCEEETTSCHHHHHHHHHHHTCCEEEEECTTSCEEEEEEHHHHHHHHH
T ss_pred             CCHHHHhcC---CcCcCCCCcHHHHHHHHHHcCCeEEEEEcCCCCEEEEEEHHHHHHHHc
Confidence            367889965   458999999999999999999999999998899999999999998765

>3sl7_A CBS domain-containing protein CBSX2; CBS-PAIR protein, redox regulator, plant CBS domain, thiored chloroplast, membrane protein; 1.91A {Arabidopsis thaliana}

Probab=98.31  E-value=9.8e-07  Score=71.52  Aligned_cols=60  Identities=27%  Similarity=0.286  Sum_probs=54.4

Q ss_pred             hhhhhhccccCCCCccccCCCcHHHHHHHHHhcCcceEEEEcCCCcEEEEeeHHHHHHHHHh
Q 019775          208 IFKVQDVMKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRRTLKA  269 (336)
Q Consensus       208 ~~~v~~im~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~it~~dl~~~~~~  269 (336)
                      ..+++++|.+.  ++++++++++.++++.|.+++.+.+||+|++|+++|+||.+||+..+..
T Consensus        97 ~~~v~~~m~~~--~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~~vGiit~~dil~~~~~  156 (180)
T 3sl7_A           97 GKVVGDLMTPS--PLVVRDSTNLEDAARLLLETKFRRLPVVDADGKLIGILTRGNVVRAALQ  156 (180)
T ss_dssp             TCBHHHHSEES--CCCEETTSBHHHHHHHHTTSTTCEEEEECTTCBEEEEEEHHHHHHHHHH
T ss_pred             cccHHHHhCCC--ceEeCCCCcHHHHHHHHHHcCCCEEEEECCCCeEEEEEEHHHHHHHHHH
Confidence            44689999987  4589999999999999999999999999989999999999999998764

>1o50_A CBS domain-containing predicted protein TM0935; CBS-domain PAIR fold, structural genomics, joint center for structural genomics, JCSG; 1.87A {Thermotoga maritima} SCOP: d.37.1.1

Probab=98.31  E-value=1.4e-06  Score=69.15  Aligned_cols=59  Identities=12%  Similarity=0.141  Sum_probs=53.5

Q ss_pred             hhhhhhccccCCCCccccCCCcHHHHHHHHHhcCcceEEEEcCCCcEEEEeeHHHHHHHHHh
Q 019775          208 IFKVQDVMKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRRTLKA  269 (336)
Q Consensus       208 ~~~v~~im~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~it~~dl~~~~~~  269 (336)
                      ..+++++|.+ .  +++++++++.++++.|.+++...+||+|++|+++|+||..||+..+..
T Consensus        95 ~~~v~~im~~-~--~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~~vGiit~~dll~~l~~  153 (157)
T 1o50_A           95 AKNASEIMLD-P--VYVHMDTPLEEALKLMIDNNIQEMPVVDEKGEIVGDLNSLEILLALWK  153 (157)
T ss_dssp             SCBHHHHCBC-C--CCBCTTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHHH
T ss_pred             CCcHHHHcCC-C--eEECCCCCHHHHHHHHHHCCCcEEEEEcCCCEEEEEEEHHHHHHHHHH
Confidence            3478999998 4  489999999999999999999999999988999999999999988764

>3k6e_A CBS domain protein; streptococcus pneumoniae TIGR4, structural genomics, PSI-2, protein structure initiative; 2.81A {Streptococcus pneumoniae}

Probab=98.30  E-value=1.3e-06  Score=69.42  Aligned_cols=58  Identities=21%  Similarity=0.244  Sum_probs=51.3

Q ss_pred             hhhhhhccccCCCCccccCCCcHHHHHHHHHhcCcceEEEEcCCCcEEEEeeHHHHHHHHHh
Q 019775          208 IFKVQDVMKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRRTLKA  269 (336)
Q Consensus       208 ~~~v~~im~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~it~~dl~~~~~~  269 (336)
                      ..+++++|.+.  ++++++++++.+++++|.++++  +||+|++|+++|+||.+|++..+..
T Consensus        85 ~~~v~~im~~~--~~~v~~~~~l~~~~~~m~~~~~--lpVVd~~g~l~GiiT~~Dil~~~~~  142 (156)
T 3k6e_A           85 DTDIVHMTKTD--VAVVSPDFTITEVLHKLVDESF--LPVVDAEGIFQGIITRKSILKAVNA  142 (156)
T ss_dssp             TSBGGGTCBCS--CCCBCTTCCHHHHHHHTTTSSE--EEEECTTSBEEEEEEHHHHHHHHHH
T ss_pred             ccCHHHhhcCC--ceecccccHHHHHHHHHHHcCC--eEEEecCCEEEEEEEHHHHHHHHHH
Confidence            45789999987  4599999999999999987764  9999999999999999999998754

>3eua_A Putative fructose-aminoacid-6-phosphate deglycase; putative phosphosugar isomerase, structural genomics, joint for structural genomics, JCSG; HET: MSE FLC; 1.90A {Bacillus subtilis}

Probab=98.28  E-value=9e-06  Score=72.75  Aligned_cols=149  Identities=15%  Similarity=0.119  Sum_probs=108.5

Q ss_pred             HHHHHHHHhcCChhHHHHHHHHHHcCCCeEEEEeccchHHHHHHHH-HHHHhc-CCeeeecCCccccccccCCCCCCcEE
Q 019775           28 QDHLNYFFQHLSLPHTLTFTQTLLKCRGTIFFTGVGKSGFVANKIS-QTLISL-GIKSGFLNPLDALHGDIGILSSDDIL  105 (336)
Q Consensus        28 ~~~l~~~~~~~~~~~i~~~~~~i~~a~~~I~i~G~G~s~~~a~~~~-~~l~~~-g~~~~~~~~~~~~~~~~~~~~~~dlv  105 (336)
                      .+.+++..+.. .+.++++++.+.++ +++|++|.|..+.+|.+.+ .+|.++ .+++..++..+..+.....++++..+
T Consensus       169 p~~~~~~l~~~-~~~~~~~a~~~~~~-~~~~~lGrG~~~~~A~E~A~LKlkE~s~i~ae~~~a~E~~HGP~alid~~~pv  246 (329)
T 3eua_A          169 QAVYEKALKQE-ADNAKQFAKAHEKE-SIIYTMASGANYGVAYSYSICILMEMQWIHSHAIHAGEYFHGPFEIIDESVPF  246 (329)
T ss_dssp             HHHHHHHHHHH-HHHHHHHHHHHTTC-SBCEEEECGGGHHHHHHHHHTTTHHHHCCBCCEEETTGGGGTGGGGCCTTSCE
T ss_pred             HHHHHHHHHHH-HHHHHHHHHHhcCC-CeEEEEcCCcCHHHHHHHHHHHHHHHcccCcccccHHHhccCcHhhccCCceE
Confidence            33444443332 25677888888888 5999999999999999998 688887 88888888899999999999999999


Q ss_pred             EEEeCCCCcHHH-HHHHHHHHHcCCeEEEEeCCCCCccccccCEEEEcCCCcccCCCCCCChhHHHHHHHHHHHHHHHHH
Q 019775          106 VMFSKSGNTEEL-LKVVPCAKAKGAYLVSVTSVEGNALAAVCDMNVHLPVERELCPFDLAPVTSTAIQMVFGDTVAIAMM  184 (336)
Q Consensus       106 i~iS~sG~~~~~-~~~~~~ak~~g~~vi~IT~~~~s~l~~~ad~~i~~~~~~~~~~~~~~~~~s~~~~~~l~d~l~~~~~  184 (336)
                      |++...+.+.+. .++++.+++.|.++++|+.... .+.   .    ++.       ......+.+.....+.+|...+.
T Consensus       247 i~~~~~~~~~~~~~~~~~~~~~~g~~v~~i~~~~~-~~~---~----~~~-------~~~~~l~pl~~~~~~Qlla~~~a  311 (329)
T 3eua_A          247 IILLGLDETRPLEERALTFSKKYGKKLTVLDAASY-DFT---A----IDD-------SVKGYLAPLVLNRVLRSYADELA  311 (329)
T ss_dssp             EEEECSSTTHHHHHHHHHHHHHHCCCEEEEEGGGS-CCT---T----SCH-------HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEECCCcchHHHHHHHHHHHHcCCeEEEEeCCcc-ccc---C----CCC-------CchHHHHHHHHHHHHHHHHHHHH
Confidence            999877777643 4567788889999999986321 111   0    110       01223345556677888888888


Q ss_pred             hhcCCChHH
Q 019775          185 GARNLTRDE  193 (336)
Q Consensus       185 ~~~~~~~~~  193 (336)
                      ..++.++++
T Consensus       312 ~~~G~d~D~  320 (329)
T 3eua_A          312 EERNHPLSH  320 (329)
T ss_dssp             HHTTCCTTC
T ss_pred             HHhCcCCCC
Confidence            888776554

>3lhh_A CBS domain protein; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG, cell membrane; HET: MSE AMP; 2.10A {Shewanella oneidensis}

Probab=98.28  E-value=5.5e-07  Score=72.78  Aligned_cols=57  Identities=14%  Similarity=0.233  Sum_probs=50.9

Q ss_pred             hhhHhhhcC--CCCeeeCCCccHHHHHHHhcCCCCCccEeEEEeCC-CcEEEEEehhhHhhc
Q 019775          276 KLTVGEMCN--RSPRTIGPDAMAVEAMQKMESPPSPVQFLPVINRQ-NILIGIVTLHGLVSA  334 (336)
Q Consensus       276 ~~~i~~~~~--~~~~~v~~~~~l~~~~~~~~~~~~~~~~l~Vv~~~-~~~iGiit~~di~~~  334 (336)
                      ..++.++|.  +++.++.+++++.++++.|.++  +...+||++++ |+++|+||..|++++
T Consensus        41 ~~~v~diM~~~~~~~~v~~~~~v~~a~~~m~~~--~~~~~pVvd~~~~~lvGivt~~dl~~~  100 (172)
T 3lhh_A           41 ERTISSLMVPRSDIVFLDLNLPLDANLRTVMQS--PHSRFPVCRNNVDDMVGIISAKQLLSE  100 (172)
T ss_dssp             --CTTTTSEEGGGCCCEETTSCHHHHHHHHHTC--CCSEEEEESSSTTSEEEEEEHHHHHHH
T ss_pred             CCCHHHhCccHHHeEEEcCCCCHHHHHHHHHhC--CCCEEEEEeCCCCeEEEEEEHHHHHHH
Confidence            578999998  5678899999999999999999  99999999987 899999999999864

>3fv6_A YQZB protein; CBS domain dimer, metabolism regulator, central glycolytic G regulator, transcription; 1.95A {Bacillus subtilis} PDB: 3fwr_A* 3fws_A*

Probab=98.28  E-value=1.4e-06  Score=69.33  Aligned_cols=61  Identities=26%  Similarity=0.429  Sum_probs=54.2

Q ss_pred             hhhhhccccCCCCccccCCCcHHHHHHHHHhcCcceEEEEcCCC---cEEEEeeHHHHHHHHHh
Q 019775          209 FKVQDVMKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEEY---HLIGTFTDGDLRRTLKA  269 (336)
Q Consensus       209 ~~v~~im~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~~---~~~G~it~~dl~~~~~~  269 (336)
                      .+++++|.+...++++++++++.++++.|.+++.+.+||+|++|   +++|+||..||+..+.+
T Consensus        81 ~~v~~~m~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~~~~~vGiit~~dil~~l~~  144 (159)
T 3fv6_A           81 VPVHIIMTRMPNITVCRREDYVMDIAKHLIEKQIDALPVIKDTDKGFEVIGRVTKTNMTKILVS  144 (159)
T ss_dssp             CBGGGTSEETTSCCCBCTTSBHHHHHHHHHHHTCSEEEEEEECSSSEEEEEEEEHHHHHHHHHH
T ss_pred             cCHHHHHcCCCCcEEECCCCCHHHHHHHHHHcCCcEEEEEeCCCcceeEEEEEEHHHHHHHHHH
Confidence            47899999833366899999999999999999999999999888   99999999999998764

>3lv9_A Putative transporter; CBS domain, PSI, MCSG, structural genomics, protein structur initiative, midwest center for structural genomics; 2.40A {Clostridium difficile 630}

Probab=98.28  E-value=1.6e-06  Score=67.98  Aligned_cols=58  Identities=16%  Similarity=0.178  Sum_probs=52.0

Q ss_pred             hhhhhccccCCCCccccCCCcHHHHHHHHHhcCcceEEEEcCCCcEEEEeeHHHHHHHHHh
Q 019775          209 FKVQDVMKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRRTLKA  269 (336)
Q Consensus       209 ~~v~~im~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~it~~dl~~~~~~  269 (336)
                      .+++++| +.  ++++++++++.++++.|.+++...+||+|++|+++|+||..|++..+..
T Consensus        88 ~~v~~~m-~~--~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~g~~~Giit~~dil~~l~~  145 (148)
T 3lv9_A           88 IELEEIL-RD--IIYISENLTIDKALERIRKEKLQLAIVVDEYGGTSGVVTIEDILEEIVG  145 (148)
T ss_dssp             CCGGGTC-BC--CEEEETTSBHHHHHHHHHHHTCSEEEEECTTSSEEEEEEHHHHHHHHHH
T ss_pred             ccHHHhc-CC--CeEECCCCCHHHHHHHHHhcCCeEEEEEeCCCCEEEEEEHHHHHHHHhC
Confidence            3678899 44  4689999999999999999999999999988999999999999988764

>3kxr_A Magnesium transporter, putative; cystathionine beta-synthase, Mg2+ transporter, structural GE PSI-2, protein structure initiative; 2.41A {Shewanella oneidensis mr-1}

Probab=98.27  E-value=1.9e-06  Score=71.74  Aligned_cols=59  Identities=15%  Similarity=0.113  Sum_probs=54.0

Q ss_pred             hhhhhccccCCCCccccCCCcHHHHHHHHHhcCcceEEEEcCCCcEEEEeeHHHHHHHHHh
Q 019775          209 FKVQDVMKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRRTLKA  269 (336)
Q Consensus       209 ~~v~~im~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~it~~dl~~~~~~  269 (336)
                      .+++++|.++  ++++++++++.++++.|.+++...+||+|++|+++|+||..|++..+..
T Consensus       116 ~~v~~im~~~--~~~v~~~~~l~~a~~~m~~~~~~~lpVVD~~g~lvGiIT~~Dil~~i~~  174 (205)
T 3kxr_A          116 EPLISLLSED--SRALTANTTLLDAAEAIEHSREIELPVIDDAGELIGRVTLRAATALVRE  174 (205)
T ss_dssp             SBGGGGCCSS--CCCEETTSCHHHHHHHHHTSSCSEEEEECTTSBEEEEEEHHHHHHHHHH
T ss_pred             chHHHHhcCC--CeEECCCCCHHHHHHHHHhcCCCEEEEEcCCCeEEEEEEHHHHHHHHHH
Confidence            3689999876  4589999999999999999999999999999999999999999998865

>2rc3_A CBS domain; in SITU proteolysis, BR, structural genomics, PSI-2, protein structure initiative; HET: NAD; 1.60A {Nitrosomonas europaea atcc 19718} SCOP: d.37.1.1

Probab=98.27  E-value=2e-06  Score=66.30  Aligned_cols=59  Identities=22%  Similarity=0.269  Sum_probs=53.2

Q ss_pred             hhhhhhccccCCCCccccCCCcHHHHHHHHHhcCcceEEEEcCCCcEEEEeeHHHHHHHHHh
Q 019775          208 IFKVQDVMKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRRTLKA  269 (336)
Q Consensus       208 ~~~v~~im~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~it~~dl~~~~~~  269 (336)
                      ..+++++|.+.  ++++++++++.++++.|.+++.+.+||+| +|+++|+||..|++..+..
T Consensus        73 ~~~v~~~m~~~--~~~v~~~~~l~~~~~~m~~~~~~~lpVvd-~g~~~Giit~~dll~~~~~  131 (135)
T 2rc3_A           73 DTQVKEIMTRQ--VAYVDLNNTNEDCMALITEMRVRHLPVLD-DGKVIGLLSIGDLVKDAIS  131 (135)
T ss_dssp             GSBGGGTSBCS--CCCBCTTCBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHHHHC
T ss_pred             cCCHHHhccCC--CeEECCCCcHHHHHHHHHHhCCCEEEEEe-CCEEEEEEEHHHHHHHHHh
Confidence            34789999886  45999999999999999999999999999 7999999999999988764

>2a3n_A Putative glucosamine-fructose-6-phosphate aminotr; structural genomics, joint center for structural genomics; HET: MSE; 1.23A {Salmonella typhimurium}

Probab=98.27  E-value=3.4e-06  Score=76.38  Aligned_cols=137  Identities=14%  Similarity=0.116  Sum_probs=105.3

Q ss_pred             hHHHHHHHHHHcCCCeEEEEeccchHHHHHHHH-HHHHhc-CCeeeecCCccccccccCCCCCCcEEEEEeCCCCcHH-H
Q 019775           41 PHTLTFTQTLLKCRGTIFFTGVGKSGFVANKIS-QTLISL-GIKSGFLNPLDALHGDIGILSSDDILVMFSKSGNTEE-L  117 (336)
Q Consensus        41 ~~i~~~~~~i~~a~~~I~i~G~G~s~~~a~~~~-~~l~~~-g~~~~~~~~~~~~~~~~~~~~~~dlvi~iS~sG~~~~-~  117 (336)
                      +.++++++.+.++ ++++++|.|..+.+|.+.+ .+|..+ .+++..+...+..+.....++++..+|++...+...+ .
T Consensus       206 ~~~~~~a~~~~~~-~~~~~lG~G~~~~~A~E~allklkE~s~i~a~~~~~~E~~HGp~ali~~~~~vi~l~~~~~~~~~~  284 (355)
T 2a3n_A          206 PQADAIASRYHNS-DYMMWVGGAEMWGEVYLFSMCILEEMQWKRTRPVSSAEFFHGALELLEKDVPLILVKGEGKCRALD  284 (355)
T ss_dssp             HHHHHHHHHHTTC-SCEEEEECGGGHHHHHHHHHHTHHHHHCCCEEEEEHHHHTTTGGGGCCTTCCEEEECCSSTTHHHH
T ss_pred             HHHHHHHHHhcCC-CcEEEEcCCcCHHHHHHHHHHHHHHHcccccccccHHHhcCCcceeecCCceEEEEecCCCcHHHH
Confidence            4577888888888 5999999999999999999 888888 6788888888888888888999999998887777644 6


Q ss_pred             HHHHHHHHHcCCeEEEEeCCCCCccccccCEEEEcCCCcccCCCCCCChhHHH-HHHHHHHHHHHHHHhhcCCChHH
Q 019775          118 LKVVPCAKAKGAYLVSVTSVEGNALAAVCDMNVHLPVERELCPFDLAPVTSTA-IQMVFGDTVAIAMMGARNLTRDE  193 (336)
Q Consensus       118 ~~~~~~ak~~g~~vi~IT~~~~s~l~~~ad~~i~~~~~~~~~~~~~~~~~s~~-~~~~l~d~l~~~~~~~~~~~~~~  193 (336)
                      .++++.++++|+++++|++.... +       +.+|..       .....+.+ ...+.++++...+...+|.++++
T Consensus       285 ~~~~~~~~~~g~~v~~i~~~~~~-~-------~~~~~~-------~~~~l~pl~~~~~~~Qlla~~~A~~~G~d~D~  346 (355)
T 2a3n_A          285 ERVERFASKITDNLVVIDPKAYA-L-------DGIDDE-------FRWIMAPCVVSTLLVDRLAAHFEKYTGHSLDI  346 (355)
T ss_dssp             HHHHHHHHHHCSCEEEECGGGSC-C-------TTSCGG-------GHHHHHHHHHHHHHTTHHHHHHHHHHCCCTTC
T ss_pred             HHHHHHHHHcCCeEEEEECCCcc-c-------cCCCcc-------hHhHhccHHHHHHHHHHHHHHHHHHHCcCCCC
Confidence            88899999999999999864211 1       112211       11233444 66688888888888888876654

>3oco_A Hemolysin-like protein containing CBS domains; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.20A {Oenococcus oeni}

Probab=98.26  E-value=1.7e-06  Score=68.32  Aligned_cols=58  Identities=24%  Similarity=0.267  Sum_probs=52.5

Q ss_pred             hhhhhccccCCCCccccCCCcHHHHHHHHHhcCcceEEEEcCCCcEEEEeeHHHHHHHHHh
Q 019775          209 FKVQDVMKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRRTLKA  269 (336)
Q Consensus       209 ~~v~~im~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~it~~dl~~~~~~  269 (336)
                      .+++++| +.  +++++++.++.++++.|.+++...+||+|++|+++|+||..|++..+..
T Consensus        86 ~~v~~~m-~~--~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~~g~~vGivt~~dil~~l~~  143 (153)
T 3oco_A           86 AKISTIM-RD--IVSVPENMKVPDVMEEMSAHRVPMAIVIDEYGGTSGIITDKDVYEELFG  143 (153)
T ss_dssp             SBGGGTC-BC--CEEEETTSBHHHHHHHHHHTTCSCEEEECTTSCEEEEECHHHHHHHHHC
T ss_pred             CcHHHHh-CC--CeEECCCCCHHHHHHHHHHcCCcEEEEEeCCCCEEEEeeHHHHHHHHhc
Confidence            3688999 54  5689999999999999999999999999988999999999999998864

>3lfr_A Putative metal ION transporter; CBS, AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 1.53A {Pseudomonas syringae}

Probab=98.26  E-value=9.6e-07  Score=68.35  Aligned_cols=57  Identities=21%  Similarity=0.213  Sum_probs=51.2

Q ss_pred             hhhhhccccCCCCccccCCCcHHHHHHHHHhcCcceEEEEcCCCcEEEEeeHHHHHHHHH
Q 019775          209 FKVQDVMKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRRTLK  268 (336)
Q Consensus       209 ~~v~~im~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~it~~dl~~~~~  268 (336)
                      .+++++|.+   ++++++++++.+++++|.+++...+||+|++|+++|+||.+|++..+.
T Consensus        70 ~~v~~~m~~---~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~g~lvGiit~~Dil~~l~  126 (136)
T 3lfr_A           70 DDVKKLLRP---ATFVPESKRLNVLLREFRANHNHMAIVIDEYGGVAGLVTIEDVLEQIV  126 (136)
T ss_dssp             CCGGGTCBC---CCEEETTCBHHHHHHHHHHHTCCEEEEECTTSCEEEEEEHHHHHTTC-
T ss_pred             cCHHHHcCC---CeEECCCCcHHHHHHHHHhcCCeEEEEEeCCCCEEEEEEHHHHHHHHh
Confidence            478899976   458999999999999999999999999998899999999999998664

>2p9m_A Hypothetical protein MJ0922; structural genomics, collaboratory for structural genomics, secsg; 2.59A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID}

Probab=98.25  E-value=2e-06  Score=66.46  Aligned_cols=59  Identities=27%  Similarity=0.481  Sum_probs=51.8

Q ss_pred             hhhhhccccCCCCccccCCCcHHHHHHHHHhcC-----cceEEEEcCCCcEEEEeeHHHHHHHHHh
Q 019775          209 FKVQDVMKPQKELPVCKEGDLIMDQLVELTSKG-----CGCLLVIDEEYHLIGTFTDGDLRRTLKA  269 (336)
Q Consensus       209 ~~v~~im~~~~~~~~~~~~~~v~~~~~~~~~~~-----~~~ipVvd~~~~~~G~it~~dl~~~~~~  269 (336)
                      .+++++|.+.  ++++++++++.++++.|.+++     .+.+||+|++|+++|+||..|++..+..
T Consensus        73 ~~v~~~m~~~--~~~v~~~~~l~~~~~~~~~~~~~~~~~~~l~Vvd~~g~~~Giit~~dll~~~~~  136 (138)
T 2p9m_A           73 TTIGDVMTKD--VITIHEDASILEAIKKMDISGKKEEIINQLPVVDKNNKLVGIISDGDIIRTISK  136 (138)
T ss_dssp             CBHHHHSCSS--CCCEETTSBHHHHHHHHTCC-----CCCEEEEECTTSBEEEEEEHHHHHHHHHH
T ss_pred             cCHHHHhCCC--cEEECCCCCHHHHHHHHHhcCCccccccEEEEECCCCeEEEEEEHHHHHHHHHh
Confidence            3688899876  458999999999999999999     9999999988999999999999987653

>3k2v_A Putative D-arabinose 5-phosphate isomerase; KPSF-like protein, CBS domain, structural genomics, PSI-2, P structure initiative; HET: MSE CMK; 1.95A {Klebsiella pneumoniae subsp} PDB: 3fna_A*

Probab=98.25  E-value=8.9e-07  Score=69.62  Aligned_cols=56  Identities=18%  Similarity=0.253  Sum_probs=52.3

Q ss_pred             hhHhhhcCC--CCeeeCCCccHHHHHHHhcCCCCCccEeEEEeCCCcEEEEEehhhHhhc
Q 019775          277 LTVGEMCNR--SPRTIGPDAMAVEAMQKMESPPSPVQFLPVINRQNILIGIVTLHGLVSA  334 (336)
Q Consensus       277 ~~i~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~l~Vv~~~~~~iGiit~~di~~~  334 (336)
                      .++.++|.+  ++..+.+++++.++++.|.++  +...+||+|++|+++|+||..|+++.
T Consensus        28 ~~v~dim~~~~~~~~v~~~~~~~~a~~~m~~~--~~~~~~Vvd~~~~~~Givt~~dl~~~   85 (149)
T 3k2v_A           28 LRVNDIMHTGDEIPHVGLQATLRDALLEITRK--NLGMTAICDDDMNIIGIFTDGDLRRV   85 (149)
T ss_dssp             SBGGGTSBCGGGSCEECTTCBHHHHHHHHHHH--TSSEEEEECTTCBEEEEEEHHHHHHH
T ss_pred             cCHHHHhcCCCCCeEECCCCcHHHHHHHHHhC--CCcEEEEECCCCcEEEEecHHHHHHH
Confidence            489999998  899999999999999999999  89999999988999999999999863

>2nyc_A Nuclear protein SNF4; bateman2 domain, AMP kinase, protein binding; 1.90A {Saccharomyces cerevisiae} SCOP: d.37.1.1 PDB: 2nye_A

Probab=98.25  E-value=1.7e-06  Score=67.30  Aligned_cols=61  Identities=15%  Similarity=0.296  Sum_probs=52.0

Q ss_pred             hhhhhccccCC----CCccccCCCcHHHHHHHHHhcCcceEEEEcCCCcEEEEeeHHHHHHHHHh
Q 019775          209 FKVQDVMKPQK----ELPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRRTLKA  269 (336)
Q Consensus       209 ~~v~~im~~~~----~~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~it~~dl~~~~~~  269 (336)
                      .+++++|.+..    .++++++++++.++++.|.+++...+||+|++|+++|+||..|++..+..
T Consensus        77 ~~v~~~m~~~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~g~~~Giit~~dil~~l~~  141 (144)
T 2nyc_A           77 LSVGEALMRRSDDFEGVYTCTKNDKLSTIMDNIRKARVHRFFVVDDVGRLVGVLTLSDILKYILL  141 (144)
T ss_dssp             SBHHHHHHHCC------CEECTTSBHHHHHHHHHHHTCSEEEEECTTSBEEEEEEHHHHHHHHHH
T ss_pred             ccHHHHHhcCccccCCCeEECCCCcHHHHHHHHHHCCCCEEEEECCCCCEEEEEEHHHHHHHHHh
Confidence            36778887531    25689999999999999999999999999988999999999999988764

>3l2b_A Probable manganase-dependent inorganic pyrophosphatase; family II, CBS domain, bateman domain, AP4A, diadenosine polyphosphate, DRTGG; HET: B4P; 2.27A {Clostridium perfringens} PDB: 3l31_A*

Probab=98.24  E-value=8.2e-07  Score=76.06  Aligned_cols=57  Identities=19%  Similarity=0.338  Sum_probs=53.5

Q ss_pred             hhhHhhhcCCCCeeeCCCccHHHHHHHhcCCCCCccEeEEEeCCCcEEEEEehhhHhhc
Q 019775          276 KLTVGEMCNRSPRTIGPDAMAVEAMQKMESPPSPVQFLPVINRQNILIGIVTLHGLVSA  334 (336)
Q Consensus       276 ~~~i~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~l~Vv~~~~~~iGiit~~di~~~  334 (336)
                      ..++.++|.+++.++.+++++.+|++.|.++  +...+||+|++|+++|+||..|++++
T Consensus         6 ~~~v~~im~~~~~~v~~~~~~~~a~~~m~~~--~~~~lpVvd~~~~l~Giit~~di~~~   62 (245)
T 3l2b_A            6 KLKVEDLEMDKIAPLAPEVSLKMAWNIMRDK--NLKSIPVADGNNHLLGMLSTSNITAT   62 (245)
T ss_dssp             CCBGGGSCCBCCCCBCTTCBHHHHHHHHHHT--TCSEEEEECTTCBEEEEEEHHHHHHH
T ss_pred             cCcHHHhcCCCCcEECCCCcHHHHHHHHHHc--CCCEEEEEcCCCEEEEEEEHHHHHHH
Confidence            5689999999999999999999999999999  99999999988999999999999864

>3lqn_A CBS domain protein; csgid, structural genomics, unknown function, center for structural genomics of infectious diseases; 1.80A {Bacillus anthracis} SCOP: d.37.1.0

Probab=98.24  E-value=3.1e-06  Score=66.40  Aligned_cols=59  Identities=24%  Similarity=0.286  Sum_probs=52.7

Q ss_pred             hhhhhhhccccCCCCccccCCCcHHHHHHHHHhcCcceEEEEcCCCcEEEEeeHHHHHHHHHh
Q 019775          207 LIFKVQDVMKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRRTLKA  269 (336)
Q Consensus       207 ~~~~v~~im~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~it~~dl~~~~~~  269 (336)
                      ...+++++|.+.  ++++++++++.++++.|.+++.  +||+|++|+++|+||..|++..+..
T Consensus        85 ~~~~v~~~m~~~--~~~v~~~~~l~~a~~~~~~~~~--l~Vvd~~g~~~Giit~~dil~~l~~  143 (150)
T 3lqn_A           85 EEMKVEQVMKQD--IPVLKLEDSFAKALEMTIDHPF--ICAVNEDGYFEGILTRRAILKLLNK  143 (150)
T ss_dssp             GGCBGGGTCBSS--CCEEETTCBHHHHHHHHHHCSE--EEEECTTCBEEEEEEHHHHHHHHHH
T ss_pred             hcCCHHHHhcCC--CceeCCCCCHHHHHHHHHhCCE--EEEECCCCcEEEEEEHHHHHHHHHH
Confidence            345789999976  4599999999999999999887  9999989999999999999998765

>3fhm_A Uncharacterized protein ATU1752; CBS domain, prokaryotic, bound nucleotide, AMP, NADH, struct genomics, PSI-2; HET: AMP NAI; 2.70A {Agrobacterium tumefaciens str}

Probab=98.23  E-value=2e-06  Score=68.83  Aligned_cols=59  Identities=15%  Similarity=0.144  Sum_probs=53.4

Q ss_pred             hhhhhhccccCCCCccccCCCcHHHHHHHHHhcCcceEEEEcCCCcEEEEeeHHHHHHHHHh
Q 019775          208 IFKVQDVMKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRRTLKA  269 (336)
Q Consensus       208 ~~~v~~im~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~it~~dl~~~~~~  269 (336)
                      ..+++++|.+.  ++++++++++.++++.|.+++.+.+||+|+ |+++|+||..||+..+..
T Consensus        92 ~~~v~~~m~~~--~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~-g~~~Giit~~dil~~~~~  150 (165)
T 3fhm_A           92 QQSVSVAMTKN--VVRCQHNSTTDQLMEIMTGGRFRHVPVEEN-GRLAGIISIGDVVKARIG  150 (165)
T ss_dssp             TSBGGGTSBSS--CCCBCTTCBHHHHHHHHHHHTCSEEEEEET-TEEEEEEEHHHHHHHTTC
T ss_pred             cCCHHHHhcCC--CeEECCCCcHHHHHHHHHHcCCCEEEEEEC-CEEEEEEEHHHHHHHHHH
Confidence            45789999976  458999999999999999999999999997 999999999999998764

>1pbj_A Hypothetical protein; structural genomics, domain, PSI, protein structure initiative; 1.40A {Methanothermobacter thermautotrophicusdelta H} SCOP: d.37.1.1

Probab=98.21  E-value=2e-06  Score=65.10  Aligned_cols=58  Identities=24%  Similarity=0.271  Sum_probs=51.9

Q ss_pred             hhhhhccccCCCCccccCCCcHHHHHHHHHhcCcceEEEEcCCCcEEEEeeHHHHHHHHHh
Q 019775          209 FKVQDVMKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRRTLKA  269 (336)
Q Consensus       209 ~~v~~im~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~it~~dl~~~~~~  269 (336)
                      .+++++|.+.  ++++++++++.++++.|.+++.+.+||+|+ |+++|++|..|+...+..
T Consensus        65 ~~v~~~m~~~--~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~-~~~~Gvit~~dl~~~l~~  122 (125)
T 1pbj_A           65 VKVWEVMERD--LVTISPRATIKEAAEKMVKNVVWRLLVEED-DEIIGVISATDILRAKMA  122 (125)
T ss_dssp             SBHHHHCBCG--GGEECTTSCHHHHHHHHHHHTCSEEEEEET-TEEEEEEEHHHHHHHHC-
T ss_pred             cCHHHHcCCC--CeEECCCCCHHHHHHHHHhcCCcEEEEEEC-CEEEEEEEHHHHHHHHHh
Confidence            4788999875  568999999999999999999999999997 999999999999987753

>2yzi_A Hypothetical protein PH0107; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; 2.25A {Pyrococcus horikoshii} SCOP: d.37.1.1

Probab=98.20  E-value=1.7e-06  Score=66.93  Aligned_cols=56  Identities=21%  Similarity=0.231  Sum_probs=51.9

Q ss_pred             hhhHhhhcCCCCeeeCCCccHHHHHHHhcCCCCCccEeEEEeCCCcEEEEEehhhHhh
Q 019775          276 KLTVGEMCNRSPRTIGPDAMAVEAMQKMESPPSPVQFLPVINRQNILIGIVTLHGLVS  333 (336)
Q Consensus       276 ~~~i~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~l~Vv~~~~~~iGiit~~di~~  333 (336)
                      ..++.++|.+++..+.+++++.++++.|.++  +...+||+|++|+++|+|+..|+++
T Consensus         6 ~~~v~~im~~~~~~v~~~~~~~~a~~~~~~~--~~~~~~Vvd~~~~~~Givt~~dl~~   61 (138)
T 2yzi_A            6 KAPIKVYMTKKLLGVKPSTSVQEASRLMMEF--DVGSLVVINDDGNVVGFFTKSDIIR   61 (138)
T ss_dssp             TSBGGGTCBCCCCEECTTSBHHHHHHHHHHH--TCSEEEEECTTSCEEEEEEHHHHHH
T ss_pred             hhhHHHHhcCCCeEECCCCcHHHHHHHHHHc--CCCEEEEEcCCCcEEEEEeHHHHHH
Confidence            5678999999999999999999999999998  8999999997799999999999973

>2cxn_A Glucose-6-phosphate isomerase; 1.40A {Mus musculus} PDB: 2cvp_A 2cxo_A* 2cxp_A* 2cxq_A* 2cxr_A* 2cxs_A* 2cxt_A* 2cxu_A 1u0e_A 1u0f_A* 1u0g_A* 1jiq_A 1iri_A 1nuh_A* 1jlh_A 1iat_A 1hm5_A 1g98_A 1hox_A* 1xtb_A* ...

Probab=98.18  E-value=1.2e-05  Score=76.04  Aligned_cols=114  Identities=16%  Similarity=0.159  Sum_probs=87.4

Q ss_pred             hHHHHHHHHHHcC---------CCeEEEEeccchHHHHHHHHHHHHhc---CCeeeecCC--ccccccccCCC-CCCcEE
Q 019775           41 PHTLTFTQTLLKC---------RGTIFFTGVGKSGFVANKISQTLISL---GIKSGFLNP--LDALHGDIGIL-SSDDIL  105 (336)
Q Consensus        41 ~~i~~~~~~i~~a---------~~~I~i~G~G~s~~~a~~~~~~l~~~---g~~~~~~~~--~~~~~~~~~~~-~~~dlv  105 (336)
                      +.++++++.+.+.         -+.|+++|.|.|+.-...+...|...   +.+++++..  ...+...+..+ .++.++
T Consensus       127 ~~m~~fa~~vr~g~~~g~~g~~i~~VV~IGIGGS~LGp~~v~~aL~~~~~~~~~v~fvsNvDp~~i~~~l~~L~~e~TLv  206 (557)
T 2cxn_A          127 DKMKSFCQRVRSGDWKGYTGKSITDIINIGIGGSDLGPLMVTEALKPYSKGGPRVWFVSNIDGTHIAKTLASLSPETSLF  206 (557)
T ss_dssp             HHHHHHHHHHHTTCSBCTTSCBCCEEEEECCGGGTHHHHHHHHHTGGGGTTSCEEEEECCSSHHHHHHHHTTCCTTTEEE
T ss_pred             HHHHHHHHHHHhCCcccCCCCccceEEEEeccchHHHHHHHHHHHhhhccCCCeEEEEecCCHHHHHHHHhcCCCCcEEE
Confidence            3677778877542         15999999999998888888888754   677888752  34555556667 667899


Q ss_pred             EEEeCCCCcHHHHHHHHHHHH----c-C------CeEEEEeCCCCCcccccc-C--EEEEcCCC
Q 019775          106 VMFSKSGNTEELLKVVPCAKA----K-G------AYLVSVTSVEGNALAAVC-D--MNVHLPVE  155 (336)
Q Consensus       106 i~iS~sG~~~~~~~~~~~ak~----~-g------~~vi~IT~~~~s~l~~~a-d--~~i~~~~~  155 (336)
                      |++|.||.|.|++..++.+|+    + |      .++|+||.+. +++.+.. +  .+|.++..
T Consensus       207 IViSKSGtT~ETl~na~~ar~~l~~~~G~~~~~~~h~VavTt~~-s~~~~~gi~~~~~F~~~d~  269 (557)
T 2cxn_A          207 IIASKTFTTQETITNAETAKEWFLEAAKDPSAVAKHFVALSTNT-AKVKEFGIDPQNMFEFWDW  269 (557)
T ss_dssp             EEECSSSCCHHHHHHHHHHHHHHHHHHCCGGGGGGTEEEEESCH-HHHHHHTCCGGGEEECCTT
T ss_pred             EEEcCCCCChhHHHHHHHHHHHHHHhcCccchhcCEEEEEeCCc-HHHHHcCCCcccEEEeecC
Confidence            999999999999999999987    4 5      5799999875 7776665 4  47777643

>2o16_A Acetoin utilization protein ACUB, putative; structural genomics, unknown function, PSI-2, protein struct initiative; 1.90A {Vibrio cholerae} SCOP: d.37.1.1

Probab=98.14  E-value=3.5e-06  Score=67.08  Aligned_cols=59  Identities=19%  Similarity=0.280  Sum_probs=52.8

Q ss_pred             hhhhhhccccCCCCccccCCCcHHHHHHHHHhcCcceEEEEcCCCcEEEEeeHHHHHHHHHh
Q 019775          208 IFKVQDVMKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRRTLKA  269 (336)
Q Consensus       208 ~~~v~~im~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~it~~dl~~~~~~  269 (336)
                      ..+++++|.+.  ++++++++++.++++.|.+++.+.+||+|+ |+++|+||..||+..+..
T Consensus        77 ~~~v~~im~~~--~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~-g~lvGiit~~dil~~~~~  135 (160)
T 2o16_A           77 ETPLFEVMHTD--VTSVAPQAGLKESAIYMQKHKIGCLPVVAK-DVLVGIITDSDFVTIAIN  135 (160)
T ss_dssp             CCBHHHHSCSC--EEEBCTTSBHHHHHHHHHHTTCSCEEEEET-TEEEEEECHHHHHHHHHH
T ss_pred             ccCHHHHhcCC--CeEECCCCCHHHHHHHHHHhCCCEEEEEEC-CEEEEEEEHHHHHHHHHH
Confidence            34788999976  568999999999999999999999999997 999999999999987653

>2rih_A Conserved protein with 2 CBS domains; bateman domain, AMP binding protein, ligand-BIND protein; 2.10A {Pyrobaculum aerophilum} SCOP: d.37.1.1 PDB: 2rif_A

Probab=98.13  E-value=1.9e-06  Score=66.89  Aligned_cols=57  Identities=18%  Similarity=0.287  Sum_probs=51.8

Q ss_pred             hhhHhhhcCCCCeeeCCCccHHHHHHHhcCCCCCccEeEEEeCCC--cEEEEEehhhHhhc
Q 019775          276 KLTVGEMCNRSPRTIGPDAMAVEAMQKMESPPSPVQFLPVINRQN--ILIGIVTLHGLVSA  334 (336)
Q Consensus       276 ~~~i~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~l~Vv~~~~--~~iGiit~~di~~~  334 (336)
                      ..++.++|.+++..+.+++++.++++.|.++  +...+||+|++|  +++|+||..|+++.
T Consensus         4 ~~~v~~im~~~~~~v~~~~~~~~a~~~~~~~--~~~~~~Vvd~~~~~~~~Givt~~dl~~~   62 (141)
T 2rih_A            4 AIRTSELLKRPPVSLPETATIREVATELAKN--RVGLAVLTARDNPKRPVAVVSERDILRA   62 (141)
T ss_dssp             -CBGGGGCCSCCEEEETTCBHHHHHHHHHHH--TCSEEEEEETTEEEEEEEEEEHHHHHHH
T ss_pred             ceEHHHHhcCCCeEeCCCCcHHHHHHHHHHc--CCCEEEEEcCCCcceeEEEEEHHHHHHH
Confidence            4578899999999999999999999999998  899999999877  99999999999863

>3c3j_A Putative tagatose-6-phosphate ketose/aldose isome; tagatose-6-phosphate ketose/aldose isomerase, structural GEN PSI, MCSG; 1.80A {Escherichia coli}

Probab=98.12  E-value=3.6e-05  Score=70.40  Aligned_cols=134  Identities=16%  Similarity=0.258  Sum_probs=103.2

Q ss_pred             cCCCeEEEEeccchHHHHHHHHHHHHhc--C-CeeeecCCccccccccCCCCCCcEEEEEeCCCCc-HH-HHHHHHHHHH
Q 019775           52 KCRGTIFFTGVGKSGFVANKISQTLISL--G-IKSGFLNPLDALHGDIGILSSDDILVMFSKSGNT-EE-LLKVVPCAKA  126 (336)
Q Consensus        52 ~a~~~I~i~G~G~s~~~a~~~~~~l~~~--g-~~~~~~~~~~~~~~~~~~~~~~dlvi~iS~sG~~-~~-~~~~~~~ak~  126 (336)
                      .+ ++++++|.|..+.+|.+.+.+|.++  | +++......+..+.....++++..+|+|...|.. +. ..++++.+++
T Consensus       223 ~~-~~~~~lG~G~~~~~A~E~aLKl~E~s~g~i~a~~~~~~e~~HGp~~lv~~~~~vi~~~~~~~~~~~~~~~~~~ev~a  301 (384)
T 3c3j_A          223 PW-KRIVYLGSGGLQGAARESALKVLELTAGKLAAFYDSPTGFRHGPKSLVDDETLVVVFVSSHPYTRQYDLDLLAELRR  301 (384)
T ss_dssp             CC-SEEEEEESTTHHHHHHHHHHHHHHHTTTSSEEEEECHHHHTTTGGGGCCTTEEEEEECCSSTTHHHHHHHHHHHHHH
T ss_pred             cC-CeEEEECCCCCHHHHHHHHHHHHHHhhccchhccccHhhcccCCHHHcCCCccEEEEEcCCchhhHHHHHHHHHHHh
Confidence            35 5999999999999999999999987  3 7888888888888888889999999999888876 55 7889999987


Q ss_pred             c--CCeEEEEeCCCCCccccccCEEEEcCCCcccCCCCCCChhHHHHHHHHHHHHHHHHHhhcCCChHH
Q 019775          127 K--GAYLVSVTSVEGNALAAVCDMNVHLPVERELCPFDLAPVTSTAIQMVFGDTVAIAMMGARNLTRDE  193 (336)
Q Consensus       127 ~--g~~vi~IT~~~~s~l~~~ad~~i~~~~~~~~~~~~~~~~~s~~~~~~l~d~l~~~~~~~~~~~~~~  193 (336)
                      +  |+++++|++.. ..+... +..+.+|....     .....+.+...+.+++|...++..+|.++++
T Consensus       302 r~~~~~v~~i~~~~-~~~~~~-~~~i~~p~~~~-----~~~~l~pl~~iv~~Qlla~~~A~~~G~dpD~  363 (384)
T 3c3j_A          302 DNQAMRVIAIAAES-SDIVAA-GPHIILPPSRH-----FIDVEQAFCFLMYAQTFALMQSLHMGNTPDT  363 (384)
T ss_dssp             HTCSSEEEEEESSC-CHHHHT-SSEEECCCCSC-----CCHHHHHHHHHHHHHHHHHHHHHHTTCCTTC
T ss_pred             CcCCCeEEEEeCCC-cccccC-CcEEEecCccC-----CChHHHHHHHHHHHHHHHHHHHHHcCCCCCC
Confidence            7  89999999753 344344 55666765211     1222345556788899999999988876654

>2pfi_A Chloride channel protein CLC-Ka; cystathionine beta synthetase (CBS) domains containing protein, transport protein; 1.60A {Homo sapiens}

Probab=98.12  E-value=3.6e-06  Score=67.03  Aligned_cols=57  Identities=30%  Similarity=0.396  Sum_probs=52.4

Q ss_pred             hhhHhhhcCCCCeeeCCCccHHHHHHHhcCCCCCccEeEEEeC--CCcEEEEEehhhHhhc
Q 019775          276 KLTVGEMCNRSPRTIGPDAMAVEAMQKMESPPSPVQFLPVINR--QNILIGIVTLHGLVSA  334 (336)
Q Consensus       276 ~~~i~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~l~Vv~~--~~~~iGiit~~di~~~  334 (336)
                      ..++.++|.+++.++.+++++.++++.|.++  +...+||+|+  +|+++|+||..|+++.
T Consensus        12 ~~~v~dim~~~~~~v~~~~~~~~a~~~~~~~--~~~~~pVvd~~~~~~~~Givt~~dl~~~   70 (164)
T 2pfi_A           12 HVRVEHFMNHSITTLAKDTPLEEVVKVVTST--DVTEYPLVESTESQILVGIVQRAQLVQA   70 (164)
T ss_dssp             SCBHHHHCBCCCCCEETTCBHHHHHHHHHTC--CCSEEEEESCTTTCBEEEEEEHHHHHHH
T ss_pred             CCCHHHHcCCCCeEECCCCcHHHHHHHHHhC--CCCceeEEecCCCCEEEEEEEHHHHHHH
Confidence            5789999999999999999999999999999  8999999986  6999999999999753

>2emq_A Hypothetical conserved protein; CBS domains, NPPSFA, national project on protein structural functional analyses; 2.50A {Geobacillus kaustophilus}

Probab=98.11  E-value=7.4e-06  Score=64.72  Aligned_cols=59  Identities=20%  Similarity=0.336  Sum_probs=52.5

Q ss_pred             hhhhhhhccccCCCCccccCCCcHHHHHHHHHhcCcceEEEEcCCCcEEEEeeHHHHHHHHHh
Q 019775          207 LIFKVQDVMKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRRTLKA  269 (336)
Q Consensus       207 ~~~~v~~im~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~it~~dl~~~~~~  269 (336)
                      ...+++++|.+.  ++++++++++.++++.|.++++  +||+|++|+++|+||..|++..+..
T Consensus        81 ~~~~v~~~m~~~--~~~v~~~~~l~~a~~~m~~~~~--l~Vvd~~g~~~Giit~~dil~~~~~  139 (157)
T 2emq_A           81 ETMKVEEVMNRN--IPRLRLDDSLMKAVGLIVNHPF--VCVENDDGYFAGIFTRREVLKQLNK  139 (157)
T ss_dssp             GTCBGGGTCBCC--CCEEETTSBHHHHHHHHHHSSE--EEEECSSSSEEEEEEHHHHHHHHHH
T ss_pred             cCCcHHHHhCCC--CceecCCCcHHHHHHHHhhCCE--EEEEcCCCeEEEEEEHHHHHHHHHH
Confidence            345789999986  4599999999999999999887  9999988999999999999998765

>1y5h_A Hypothetical protein RV2626C; CBS domain, unknown function; 1.50A {Mycobacterium tuberculosis} SCOP: d.37.1.1 PDB: 1xkf_A

Probab=98.10  E-value=2.9e-06  Score=65.10  Aligned_cols=56  Identities=20%  Similarity=0.284  Sum_probs=50.6

Q ss_pred             hhhhhccccCCCCccccCCCcHHHHHHHHHhcCcceEEEEcCCCcEEEEeeHHHHHHHH
Q 019775          209 FKVQDVMKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRRTL  267 (336)
Q Consensus       209 ~~v~~im~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~it~~dl~~~~  267 (336)
                      .+++++|.+.  ++++++++++.++++.|.+++.+.+||+|+ |+++|++|.+|++..+
T Consensus        74 ~~v~~~m~~~--~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~-g~~~Giit~~dil~~l  129 (133)
T 1y5h_A           74 ATAGELARDS--IYYVDANASIQEMLNVMEEHQVRRVPVISE-HRLVGIVTEADIARHL  129 (133)
T ss_dssp             SBHHHHHTTC--CCCEETTCCHHHHHHHHHHHTCSEEEEEET-TEEEEEEEHHHHHHTC
T ss_pred             cCHHHHhcCC--CEEECCCCCHHHHHHHHHHcCCCEEEEEEC-CEEEEEEEHHHHHHHH
Confidence            4788999886  458999999999999999999999999997 8999999999998754

>3oi8_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADN; 1.99A {Neisseria meningitidis serogroup B}

Probab=98.09  E-value=4.9e-06  Score=65.91  Aligned_cols=53  Identities=25%  Similarity=0.323  Sum_probs=48.2

Q ss_pred             hhhhhccccCCCCccccCCCcHHHHHHHHHhcCcceEEEEcCCCcEEEEeeHHHHH
Q 019775          209 FKVQDVMKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLR  264 (336)
Q Consensus       209 ~~v~~im~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~it~~dl~  264 (336)
                      .+++++|.+   .+++++++++.++++.|.+++...+||+|++|+++|+||.+|++
T Consensus       103 ~~v~~im~~---~~~v~~~~~l~~a~~~m~~~~~~~~~Vvd~~g~~~Givt~~Dil  155 (156)
T 3oi8_A          103 FHLKSILRP---AVFVPEGKSLTALLKEFREQRNHMAIVIDEYGGTSGLVTFEDII  155 (156)
T ss_dssp             CCHHHHCBC---CCEEETTSBHHHHHHHHHHTTCCEEEEECTTSSEEEEEEHHHHC
T ss_pred             ccHHHHcCC---CEEECCCCCHHHHHHHHHhcCCeEEEEECCCCCEEEEEEHHHhc
Confidence            468899976   45899999999999999999999999999899999999999975

>1yav_A Hypothetical protein BSU14130; cystathionine beta synthase (CBS) domain, structural genomics, protein structure initiative, PSI; 2.10A {Bacillus subtilis} SCOP: d.37.1.1

Probab=98.08  E-value=1.7e-06  Score=68.76  Aligned_cols=57  Identities=14%  Similarity=0.208  Sum_probs=52.6

Q ss_pred             hhhHhhhcCC--CCeeeCCCccHHHHHHHhcCCCCCccEeEEEeCCCcEEEEEehhhHhhc
Q 019775          276 KLTVGEMCNR--SPRTIGPDAMAVEAMQKMESPPSPVQFLPVINRQNILIGIVTLHGLVSA  334 (336)
Q Consensus       276 ~~~i~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~l~Vv~~~~~~iGiit~~di~~~  334 (336)
                      ..++.++|.+  ++.++.+++++.++++.|.++  +...+||+|++|+++|+||..|+++.
T Consensus        13 ~~~v~~im~~~~~~~~v~~~~~l~~a~~~m~~~--~~~~~pVvd~~~~lvGivt~~dl~~~   71 (159)
T 1yav_A           13 EATVGQFMIEADKVAHVQVGNNLEHALLVLTKT--GYTAIPVLDPSYRLHGLIGTNMIMNS   71 (159)
T ss_dssp             TCBHHHHSEEGGGSCCEETTCBHHHHHHHHHHH--CCSEEEEECTTCBEEEEEEHHHHHHH
T ss_pred             HhhHHHHhCCccceEEECCCCcHHHHHHHHHhC--CCcEEEEECCCCCEEEEeEHHHHHHH
Confidence            5789999988  888999999999999999998  89999999988999999999999863

>1pvm_A Conserved hypothetical protein TA0289; structural genomics, CBS domain, PSI, protein structure initiative; 1.50A {Thermoplasma acidophilum dsm 1728} SCOP: d.37.1.1 g.41.13.1 PDB: 2qh1_A

Probab=98.06  E-value=3.3e-06  Score=68.87  Aligned_cols=59  Identities=25%  Similarity=0.302  Sum_probs=52.6

Q ss_pred             hhhhhhccccCCCCccccCCCcHHHHHHHHHhcCcceEEEEcCCCcEEEEeeHHHHHHHHH
Q 019775          208 IFKVQDVMKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRRTLK  268 (336)
Q Consensus       208 ~~~v~~im~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~it~~dl~~~~~  268 (336)
                      ..+++++|.+.  ++++++++++.++++.|.+++.+.+||+|++|+++|+||..||+..+.
T Consensus        74 ~~~v~~im~~~--~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~~~Givt~~dll~~~~  132 (184)
T 1pvm_A           74 EVPIRLVMRKP--IPKVKSDYDVKDVAAYLSENGLERCAVVDDPGRVVGIVTLTDLSRYLS  132 (184)
T ss_dssp             GSBGGGTSBSS--CCEEETTCBHHHHHHHHHHHTCSEEEEECTTCCEEEEEEHHHHTTTSC
T ss_pred             cCCHHHHhCCC--CcEECCCCCHHHHHHHHHHcCCcEEEEEcCCCeEEEEEEHHHHHHHHH
Confidence            34789999986  459999999999999999999999999998899999999999987543

>2j9l_A Chloride channel protein 5; ION channel, ION transport, voltage-gated; HET: ATP; 2.30A {Homo sapiens} SCOP: d.37.1.1 PDB: 2ja3_A*

Probab=98.04  E-value=7.2e-06  Score=66.64  Aligned_cols=60  Identities=13%  Similarity=0.134  Sum_probs=53.9

Q ss_pred             hhhhhhccccCCCCccccCCCcHHHHHHHHHhcCcceEEEEcCCCcEEEEeeHHHHHHHHHhc
Q 019775          208 IFKVQDVMKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRRTLKAS  270 (336)
Q Consensus       208 ~~~v~~im~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~it~~dl~~~~~~~  270 (336)
                      ..+++++|.+.  ++++++++++.++++.|.+++.+.+||+| +|+++|+||..||+..+...
T Consensus       107 ~~~v~~im~~~--~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd-~g~~vGiit~~dll~~l~~~  166 (185)
T 2j9l_A          107 TLKLRNILDLS--PFTVTDLTPMEIVVDIFRKLGLRQCLVTH-NGRLLGIITKKDVLKHIAQM  166 (185)
T ss_dssp             CEECGGGEESS--CCEEETTSBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHHHHHH
T ss_pred             CccHHHhhCcC--CeEeCCCCCHHHHHHHHHhCCCcEEEEEE-CCEEEEEEEHHHHHHHHHHh
Confidence            45788999876  45999999999999999999999999999 89999999999999988653

>2d4z_A Chloride channel protein; CLC chloride channel cytoplasmic domain, CBS domains, ION CH regulatory subunit, transport protein; 3.10A {Torpedo marmorata} SCOP: d.37.1.1

Probab=98.03  E-value=3.4e-06  Score=72.33  Aligned_cols=57  Identities=16%  Similarity=0.385  Sum_probs=52.3

Q ss_pred             hhhHhhhcCCCCeeeCCCccHHHHHHHhcCCCCCccEeEEEeCC--CcEEEEEehhhHhhc
Q 019775          276 KLTVGEMCNRSPRTIGPDAMAVEAMQKMESPPSPVQFLPVINRQ--NILIGIVTLHGLVSA  334 (336)
Q Consensus       276 ~~~i~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~l~Vv~~~--~~~iGiit~~di~~~  334 (336)
                      ...+.++|.+++.++.+++++.++.++|.++  +...+||||+.  |+++|+|++.||+++
T Consensus        12 ~~~v~diMt~~vvtv~~~~tv~~~~~lm~~~--~~~~~PVVd~~~~~~LvGiIt~~dl~~~   70 (250)
T 2d4z_A           12 NIQVGDIMVRDVTSIASTSTYGDLLHVLRQT--KLKFFPFVDTPDTNTLLGSIDRTEVEGL   70 (250)
T ss_dssp             SCBTTSSSBSSCCCEETTCBHHHHHHHHHHC--CCSEEEEESCTTTCBEEEEEEHHHHHHH
T ss_pred             CCChHHhcCCCCeEECCCCCHHHHHHHHHhc--CCCEEEEEecCCCCeEEEEEEHHHHHHH
Confidence            5789999999999999999999999999999  99999999873  689999999999863

>2oux_A Magnesium transporter; 10001B, structural genomics, PSI-2, P structure initiative, nysgxrc; 2.16A {Enterococcus faecalis} SCOP: a.118.26.1 d.37.1.1

Probab=98.01  E-value=9.7e-06  Score=71.08  Aligned_cols=59  Identities=19%  Similarity=0.220  Sum_probs=53.8

Q ss_pred             hhhhhccccCCCCccccCCCcHHHHHHHHHhcCcceEEEEcCCCcEEEEeeHHHHHHHHHh
Q 019775          209 FKVQDVMKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRRTLKA  269 (336)
Q Consensus       209 ~~v~~im~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~it~~dl~~~~~~  269 (336)
                      .+++++|.+.  ++++++++++.++++.|.+++...+||+|++|+++|+||..|+...+..
T Consensus       201 ~~v~~im~~~--~~~v~~~~~l~ea~~~m~~~~~~~lpVVd~~g~lvGiIT~~Dil~~i~~  259 (286)
T 2oux_A          201 TLIADILNER--VISVHVGDDQEDVAQTIRDYDFLAVPVTDYDDHLLGIVTVDDIIDVIDD  259 (286)
T ss_dssp             SBHHHHSBSC--CCCEETTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHHHHHHH
T ss_pred             CcHHHHcCCC--CeeecCCCCHHHHHHHHHHcCCcEEEEEcCCCeEEEEEEHHHHHHHHHH
Confidence            4688999876  4599999999999999999999999999988999999999999998764

>3ocm_A Putative membrane protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADP; 1.80A {Bordetella parapertussis}

Probab=98.00  E-value=5.3e-06  Score=67.08  Aligned_cols=74  Identities=16%  Similarity=0.250  Sum_probs=57.5

Q ss_pred             EEEeeHHHH--HHHHHhcCCchhhhhHhhhcCC--CCeeeCCCccHHHHHHHhcCCCCCccEeEEEeCC-CcEEEEEehh
Q 019775          255 IGTFTDGDL--RRTLKASGEGIFKLTVGEMCNR--SPRTIGPDAMAVEAMQKMESPPSPVQFLPVINRQ-NILIGIVTLH  329 (336)
Q Consensus       255 ~G~it~~dl--~~~~~~~~~~~~~~~i~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~l~Vv~~~-~~~iGiit~~  329 (336)
                      -|.++..+-  +.....    ....++.++|.+  ++.++.+++++.++++.|.++  +...+||++++ |+++|+|+..
T Consensus        16 ~g~l~~~e~~~i~~~l~----l~~~~v~diM~~~~~v~~v~~~~tv~ea~~~m~~~--~~~~~pVvd~~~~~lvGivt~~   89 (173)
T 3ocm_A           16 VPAFGVEERNMVSGVLT----LAERSIRSIMTPRTDVSWVNIDDDAATIRQQLTAA--PHSFFPVCRGSLDEVVGIGRAK   89 (173)
T ss_dssp             --CCCHHHHHHHHHHHH----HTTSCSTTTSEEGGGCCCEETTSCHHHHHHHHHHS--SCSEEEEESSSTTSEEEEEEHH
T ss_pred             cCCcCHHHHHHHHHHhc----cCCCCHHHhCCcHHHeEEEeCCCCHHHHHHHHHhC--CCCEEEEEeCCCCCEEEEEEHH
Confidence            377774443  333322    125789999964  577899999999999999999  99999999886 8999999999


Q ss_pred             hHhhc
Q 019775          330 GLVSA  334 (336)
Q Consensus       330 di~~~  334 (336)
                      ||+++
T Consensus        90 Dl~~~   94 (173)
T 3ocm_A           90 DLVAD   94 (173)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            99864

>2o2c_A GPI, glucose-6-phosphate isomerase, glycosomal, PGI, phosphohexose; dimer; HET: G6Q; 1.58A {Trypanosoma brucei brucei} PDB: 2o2d_A* 1q50_A

Probab=97.97  E-value=7.8e-06  Score=77.75  Aligned_cols=114  Identities=11%  Similarity=0.124  Sum_probs=85.4

Q ss_pred             hHHHHHHHHHHcC---------CCeEEEEeccchHHHHHHHHHHHHhc---CCeeeecCC--ccccccccCCC-CCCcEE
Q 019775           41 PHTLTFTQTLLKC---------RGTIFFTGVGKSGFVANKISQTLISL---GIKSGFLNP--LDALHGDIGIL-SSDDIL  105 (336)
Q Consensus        41 ~~i~~~~~~i~~a---------~~~I~i~G~G~s~~~a~~~~~~l~~~---g~~~~~~~~--~~~~~~~~~~~-~~~dlv  105 (336)
                      +.++++++.+.+.         -+.|+++|.|.|+.-...+...|...   +.++++++.  ...+...+..+ .++.++
T Consensus       175 ~~i~~fa~~vrsg~~~g~tg~~i~~VV~IGIGGS~LGp~~v~eaL~~~~~~~~~v~fvsNvDp~~i~~~l~~l~~e~TLf  254 (613)
T 2o2c_A          175 DQMRSFSEKVRTGEWKGHTGKAIRHVVNIGIGGSDLGPVMATEALKPFSQRDLSLHFVSNVDGTHIAEVLKSIDIEATLF  254 (613)
T ss_dssp             HHHHHHHHHHHHTCSBCTTSCBCCEEEEECCGGGTHHHHHHHHHTGGGSCTTSEEEEECCSSHHHHHHHHHHCCGGGEEE
T ss_pred             HHHHHHHHHHHhCCcccCCCCceeeEEEEeccchHHHHHHHHHHhhhhccCCceEEEEccCCHHHHHHHHhcCCCCCEEE
Confidence            3567777777542         15999999999998888888888765   578888863  44444444444 457889


Q ss_pred             EEEeCCCCcHHHHHHHHHHHHc-----C-----------CeEEEEeCCCCCcccccc-C--EEEEcCCC
Q 019775          106 VMFSKSGNTEELLKVVPCAKAK-----G-----------AYLVSVTSVEGNALAAVC-D--MNVHLPVE  155 (336)
Q Consensus       106 i~iS~sG~~~~~~~~~~~ak~~-----g-----------~~vi~IT~~~~s~l~~~a-d--~~i~~~~~  155 (336)
                      |++|.||.|.|++..++.+|+.     |           .++|+||.+. +++.+.. |  .+|.++..
T Consensus       255 IViSKSGTT~ETl~na~~ar~~l~~~~G~~g~~~~~~~a~h~VAVTt~~-s~~~~~gi~~~~~F~~~d~  322 (613)
T 2o2c_A          255 IVASKTFTTQETITNALSARRALLDYLRSRGIDEKGSVAKHFVALSTNN-QKVKEFGIDEENMFQFWDW  322 (613)
T ss_dssp             EEECSSSCCHHHHHHHHHHHHHHHHHHHHTTCCCTTCHHHHEEEEESCH-HHHHHHTCCGGGEEECCTT
T ss_pred             EEEeCCCCChhHHHHHHHHHHHHHHhcCCcccccchhhcCEEEEEeCCc-HHHHHcCCCccceEeeecC
Confidence            9999999999999999888877     6           4799999875 6776665 4  47777643

>2yvy_A MGTE, Mg2+ transporter MGTE; membrane protein, transport protein; 2.30A {Thermus thermophilus} PDB: 2yvz_A

Probab=97.96  E-value=9.4e-06  Score=70.87  Aligned_cols=59  Identities=24%  Similarity=0.305  Sum_probs=52.4

Q ss_pred             hhhhhccccCCCCccccCCCcHHHHHHHHHhcCcceEEEEcCCCcEEEEeeHHHHHHHHHh
Q 019775          209 FKVQDVMKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRRTLKA  269 (336)
Q Consensus       209 ~~v~~im~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~it~~dl~~~~~~  269 (336)
                      .+++++|.+.  ++++++++++.++++.|.+++...+||+|++|+++|+||..|+...+..
T Consensus       199 ~~v~~im~~~--~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~lvGivT~~Dil~~i~~  257 (278)
T 2yvy_A          199 TRVAEIMNPK--VVYVRTDTDQEEVARLMADYDFTVLPVVDEEGRLVGIVTVDDVLDVLEA  257 (278)
T ss_dssp             CBSTTTSBSS--CCCEETTSBHHHHHHHHHHHTCSEEEEECTTSBEEEEEEHHHHHHHC--
T ss_pred             CcHHHHhCCC--CeEEeCCCCHHHHHHHHHhcCCCEEEEEeCCCeEEEEEEHHHHHHHHHH
Confidence            3688999876  4599999999999999999999999999988999999999999987654

>3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A*

Probab=97.90  E-value=5e-05  Score=71.85  Aligned_cols=104  Identities=17%  Similarity=0.198  Sum_probs=72.0

Q ss_pred             hhhhhhccccCCCCccccCCCcHHHHHHHHHhcCcceEEEEcCCCcEEEEeeHHHHHHHHHhcCCchhhhhHhhhcCCCC
Q 019775          208 IFKVQDVMKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRRTLKASGEGIFKLTVGEMCNRSP  287 (336)
Q Consensus       208 ~~~v~~im~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~it~~dl~~~~~~~~~~~~~~~i~~~~~~~~  287 (336)
                      ..+++++|.+. ++++++++.++.+++++|.+++...+||+|++|+++|+||.+|++..+....      ...+.+.+-+
T Consensus       174 ~~~V~~vM~~~-~~vtv~~~~~l~eal~~m~~~~i~~lpVVDe~g~l~GiIT~~Dil~~~~~p~------a~~D~~~rl~  246 (511)
T 3usb_A          174 SIKISDVMTKE-QLITAPVGTTLSEAEKILQKYKIEKLPLVDNNGVLQGLITIKDIEKVIEFPN------SAKDKQGRLL  246 (511)
T ss_dssp             SSBHHHHCCCC-CCCCEETTCCHHHHHHHHHHHTCSEEEEECTTSBEEEEEEHHHHHHHHHCTT------CCBCTTSCBC
T ss_pred             CCcHHHhcccC-CCEEECCCCCHHHHHHHHHHcCCCEEEEEeCCCCEeeeccHHHHHHhhhccc------chhhhcccee
Confidence            45789999972 2568999999999999999999999999999999999999999999876411      1222222222


Q ss_pred             e--eeCCCccHHHHHHHhcCCCCCccEeEEEeCCC
Q 019775          288 R--TIGPDAMAVEAMQKMESPPSPVQFLPVINRQN  320 (336)
Q Consensus       288 ~--~v~~~~~l~~~~~~~~~~~~~~~~l~Vv~~~~  320 (336)
                      .  .+.......+.++.+.+.  +.+.+.|-..++
T Consensus       247 V~aavg~~~d~~era~aLvea--Gvd~I~Id~a~g  279 (511)
T 3usb_A          247 VGAAVGVTADAMTRIDALVKA--SVDAIVLDTAHG  279 (511)
T ss_dssp             CEEEECSSTTHHHHHHHHHHT--TCSEEEEECSCT
T ss_pred             eeeeeeeccchHHHHHHHHhh--ccceEEeccccc
Confidence            2  233333334444555555  677765544333

>1me8_A Inosine-5'-monophosphate dehydrogenase; alpha beta barrel, oxidoreductase; HET: RVP; 1.90A {Tritrichomonas foetus} SCOP: c.1.5.1 PDB: 1ak5_A* 1me7_A* 1me9_A* 1meh_A* 1mei_A* 1mew_A* 1pvn_A* 1lrt_A*

Probab=97.86  E-value=1.5e-06  Score=82.34  Aligned_cols=109  Identities=17%  Similarity=0.117  Sum_probs=19.6

Q ss_pred             hhhhhhhccccCCCCccccCCCcHHHHHHHHHhcCcceEEEEcCCCcEEEEeeHHHHHHHHHhcCCchhhhhHhhhcCCC
Q 019775          207 LIFKVQDVMKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRRTLKASGEGIFKLTVGEMCNRS  286 (336)
Q Consensus       207 ~~~~v~~im~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~it~~dl~~~~~~~~~~~~~~~i~~~~~~~  286 (336)
                      ...+++++|.+...+++++++.++.+++++|.+++.+.+||+|++|+++|+||.+||+..+.....  ...+...++.  
T Consensus       159 ~~~~V~diM~~~~~~~tv~~~~sl~ea~~~m~~~~i~~lpVVDe~g~lvGiIT~~Dil~~~~~~~~--~~d~~~~l~v--  234 (503)
T 1me8_A          159 TETKVSDMMTPFSKLVTAHQDTKLSEANKIIWEKKLNALPIIDDDQHLRYIVFRKDYDRSQVCHNE--LVDSQKRYLV--  234 (503)
T ss_dssp             ---------------------------------------------------------------CCC--CBCTTSCBCC--
T ss_pred             ccCcHHHHhCCCCCCEEEcCCCcHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEecHHHHhhhcccc--hhcccccccc--
Confidence            345789999986445689999999999999999999999999999999999999999987764221  1111222211  


Q ss_pred             CeeeCCCccHHHHHHHhcCCCCCccEeEEEeCCCcE
Q 019775          287 PRTIGPDAMAVEAMQKMESPPSPVQFLPVINRQNIL  322 (336)
Q Consensus       287 ~~~v~~~~~l~~~~~~~~~~~~~~~~l~Vv~~~~~~  322 (336)
                      ...+.. ....+.++.|.+.  +.+.+.|...+|..
T Consensus       235 ~a~v~~-~~~~e~~~~l~e~--gv~~l~Vd~~~g~~  267 (503)
T 1me8_A          235 GAGINT-RDFRERVPALVEA--GADVLCIDSSDGFS  267 (503)
T ss_dssp             EEEECS-SSHHHHHHHHHHH--TCSEEEECCSCCCS
T ss_pred             ccccCc-hhHHHHHHHHHhh--hccceEEecccCcc
Confidence            123344 4455556777776  67766553333433

>2zy9_A Mg2+ transporter MGTE; membrane protien, metal transport; 2.94A {Thermus thermophilus} PDB: 2yvx_A

Probab=97.78  E-value=4e-05  Score=71.97  Aligned_cols=59  Identities=24%  Similarity=0.305  Sum_probs=53.9

Q ss_pred             hhhhhccccCCCCccccCCCcHHHHHHHHHhcCcceEEEEcCCCcEEEEeeHHHHHHHHHh
Q 019775          209 FKVQDVMKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRRTLKA  269 (336)
Q Consensus       209 ~~v~~im~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~it~~dl~~~~~~  269 (336)
                      .+++++|.++  ++++++++++.++.+.|.+++...+||+|++|+++|+||.+|+...+..
T Consensus       219 ~~v~dim~~~--~~~v~~~~~l~ea~~~m~~~~~~~lpVVDe~g~lvGiIT~~Dil~~i~~  277 (473)
T 2zy9_A          219 TRVAEIMNPK--VVYVRTDTDQEEVARLMADYDFTVLPVVDEEGRLVGIVTVDDVLDVLEA  277 (473)
T ss_dssp             SBGGGTSBSS--CCCEESSSBHHHHHHHHHHHTCSEEEEECTTSBEEEEEEHHHHHHHHHH
T ss_pred             CcHHHHhCCC--CeEEeCCCcHHHHHHHHHhcCCcEEEEEcCCCEEEEEEehHhhHHHHHH
Confidence            4789999876  5599999999999999999999999999999999999999999998764

>1t10_A GPI, glucose-6-phosphate isomerase, PGI, phosphohexose; phosphoglucose isomerase, substrate, D-fructose-6-phosphate; HET: F6P; 2.35A {Leishmania mexicana mexicana} SCOP: c.80.1.2

Probab=97.77  E-value=0.00013  Score=69.28  Aligned_cols=114  Identities=15%  Similarity=0.135  Sum_probs=84.9

Q ss_pred             hHHHHHHHHHHcC---------CCeEEEEeccchHHHHHHHHHHHHhc---CCeeeecC--CccccccccCCC-CCCcEE
Q 019775           41 PHTLTFTQTLLKC---------RGTIFFTGVGKSGFVANKISQTLISL---GIKSGFLN--PLDALHGDIGIL-SSDDIL  105 (336)
Q Consensus        41 ~~i~~~~~~i~~a---------~~~I~i~G~G~s~~~a~~~~~~l~~~---g~~~~~~~--~~~~~~~~~~~~-~~~dlv  105 (336)
                      +.++++++.+.+.         -+.|+++|.|.|+.-...+...|...   +.++++++  +...+...+..+ .++.++
T Consensus       174 ~~i~~fa~~vrsg~~~g~tg~~i~~VV~IGIGGS~LGp~~v~~aL~~~~~~~~~v~fvsNvDp~~i~~~l~~l~~e~TLf  253 (605)
T 1t10_A          174 AQMKDFTERVRSGEWKGQTGKSIYNIVNIGIGGSDLGPVMVTEALKPFSKRDLHCFFVSNVDGTHMAEVLKQVNLEETIF  253 (605)
T ss_dssp             HHHHHHHHHHHHSCSBCTTSCBCCEEEEECCGGGTHHHHHHHHHTGGGSCSSSEEEEECCSSTHHHHHHHTTSCGGGEEE
T ss_pred             HHHHHHHHHHHhCCcccCCCCccceEEEEeccchHHHHHHHHHHhhhhccCCCeEEEEecCCHHHHHHHHhcCCCCcEEE
Confidence            3567777777542         15999999999998888888888765   57888886  344455555555 456789


Q ss_pred             EEEeCCCCcHHHHHHHHHHHHc-----C-----------CeEEEEeCCCCCcccccc-C--EEEEcCCC
Q 019775          106 VMFSKSGNTEELLKVVPCAKAK-----G-----------AYLVSVTSVEGNALAAVC-D--MNVHLPVE  155 (336)
Q Consensus       106 i~iS~sG~~~~~~~~~~~ak~~-----g-----------~~vi~IT~~~~s~l~~~a-d--~~i~~~~~  155 (336)
                      |++|.||.|.|++..++.+|+.     |           .++|+||.+. +++.+.. |  .+|.++..
T Consensus       254 IViSKSGtT~ETl~na~~ar~~l~~~~g~~~~~~~~~~~~h~VavTt~~-s~~~~~gi~~~~~F~~~d~  321 (605)
T 1t10_A          254 IIASKTFTTQETLTNAMSARNALMSYLKENGISTDGAVAKHFVALSTNT-EKVREFGIDTVNMFAFWDW  321 (605)
T ss_dssp             EEECSSSCCHHHHHHHHHHHHHHHHHHHHTTCCCTTHHHHHEEEECSCH-HHHHHTTCCGGGEECCCTT
T ss_pred             EEEeCCCCChhHHHHHHHHHHHHHHhcccccccccccccCEEEEEeCCc-hHHHHcCCCcccEEeeecc
Confidence            9999999999999999888762     2           5799999875 6776665 4  46777643

>3ff1_A Glucose-6-phosphate isomerase; alpha beta, rossmann fold, gluconeogenesis, glycolysis, structural genomics; HET: G6Q; 1.65A {Staphylococcus aureus subsp} SCOP: c.80.1.2 PDB: 3ifs_A*

Probab=97.74  E-value=3.8e-05  Score=70.61  Aligned_cols=114  Identities=19%  Similarity=0.189  Sum_probs=83.6

Q ss_pred             hHHHHHHHHHHc-CCCeEEEEeccchHHHHHHHHHHHHhc------CCeeeecC---CccccccccCCCC-CCcEEEEEe
Q 019775           41 PHTLTFTQTLLK-CRGTIFFTGVGKSGFVANKISQTLISL------GIKSGFLN---PLDALHGDIGILS-SDDILVMFS  109 (336)
Q Consensus        41 ~~i~~~~~~i~~-a~~~I~i~G~G~s~~~a~~~~~~l~~~------g~~~~~~~---~~~~~~~~~~~~~-~~dlvi~iS  109 (336)
                      +.++++++.+.+ . +.|.++|.|.|+.=+..+...|...      +.+++++.   +...+...+..++ ++.++|++|
T Consensus        63 ~~i~~~a~~vr~~~-~~vV~IGIGGS~LGp~~v~eaL~~~~~~~~~~~~~~fv~dnvDp~~i~~~l~~l~~~~Tl~iViS  141 (446)
T 3ff1_A           63 SRIVEASKRIKENS-DVLVVIGIGGSYLGARAAIEMLTSSFRNSNEYPEIVFVGNHLSSTYTKELVDYLADKDFSVNVIS  141 (446)
T ss_dssp             HHHHHHHHHHHHHC-SEEEEECCGGGTHHHHHHHHHHSCSSCCCCSSCEEEEESSSCCHHHHHHHHHHGGGCCEEEEEEC
T ss_pred             HHHHHHHHHHhcCC-CEEEEEecchhHHHHHHHHHHHcchhhcccCCceEEEEecCCCHHHHHHHHHhcCccceEEEEEc
Confidence            457777777764 5 5899999999998888877777653      45676664   4445555555554 567899999


Q ss_pred             CCCCcHHHHHHHHHHHH----c-C-----CeEEEEeCCCCCccccccC----EEEEcCCC
Q 019775          110 KSGNTEELLKVVPCAKA----K-G-----AYLVSVTSVEGNALAAVCD----MNVHLPVE  155 (336)
Q Consensus       110 ~sG~~~~~~~~~~~ak~----~-g-----~~vi~IT~~~~s~l~~~ad----~~i~~~~~  155 (336)
                      .||.|.|+....+.+|+    + |     .++|++|++..++|.+.|+    -+|.++..
T Consensus       142 KSgtT~ET~~n~~~~r~~l~~~~g~~~~~~h~vavT~~~~g~L~~~a~~~G~~~F~~~d~  201 (446)
T 3ff1_A          142 KSGTTTEPAVAFRLFKQLVEERYGKEEAQKRIFATTDKEKGALKQLATNEGYETFIVPDD  201 (446)
T ss_dssp             SSSCCHHHHHHHHHHHHHHHHHHCHHHHHHHEEEEECSSCSHHHHHHHHHTCEEEECCTT
T ss_pred             CCCCCHHHHHHHHHHHHHHHHhcCcccccceEEEEeCCCcchhhhHHHHcCCeEEEeccc
Confidence            99999999999887764    2 4     3699999987788877764    25666554

>3pc3_A CG1753, isoform A; CBS, synthase, PLP, heme, aminoacrylate, lyase; HET: HEM P1T; 1.55A {Drosophila melanogaster} PDB: 3pc2_A* 3pc4_A*

Probab=97.59  E-value=3.4e-05  Score=73.57  Aligned_cols=57  Identities=26%  Similarity=0.395  Sum_probs=52.6

Q ss_pred             hhhHhhhcCCCCeeeCCC-ccHHHHHHHhcCCCCCccEeEEEe-CCCcEEEEEehhhHhhc
Q 019775          276 KLTVGEMCNRSPRTIGPD-AMAVEAMQKMESPPSPVQFLPVIN-RQNILIGIVTLHGLVSA  334 (336)
Q Consensus       276 ~~~i~~~~~~~~~~v~~~-~~l~~~~~~~~~~~~~~~~l~Vv~-~~~~~iGiit~~di~~~  334 (336)
                      ..++.++|.+++.++.++ +++.++++.|.++  +...+||+| ++|+++|+||..||++.
T Consensus       383 ~~~V~diM~~~~vtv~~~~~tv~ea~~~m~~~--~~~~lpVvd~~~g~lvGiVt~~Dll~~  441 (527)
T 3pc3_A          383 SLAIAELELPAPPVILKSDATVGEAIALMKKH--RVDQLPVVDQDDGSVLGVVGQETLITQ  441 (527)
T ss_dssp             TSBGGGGCCCCCSCCEETTCBHHHHHHHHHHH--TCSEEEEECTTTCCEEEEEEHHHHHHH
T ss_pred             CCcHHHhCcCCCeEEcCCCCcHHHHHHHHHHc--CCCeEEEEECCCCEEEEEEEHHHHHHH
Confidence            467999999999999999 9999999999999  999999999 67999999999999853

>4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor}

Probab=97.43  E-value=0.00031  Score=66.20  Aligned_cols=54  Identities=20%  Similarity=0.275  Sum_probs=47.8

Q ss_pred             hhHhhhcCCCCeeeCCCccHHHHHHHhcCCCCCccEeEEEeCCCcEEEEEehhhHh
Q 019775          277 LTVGEMCNRSPRTIGPDAMAVEAMQKMESPPSPVQFLPVINRQNILIGIVTLHGLV  332 (336)
Q Consensus       277 ~~i~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~l~Vv~~~~~~iGiit~~di~  332 (336)
                      ....++|.+++.++.+++++.++++.|.++  +...+||+|++++++|+||.+|+.
T Consensus        89 k~~~~~m~~d~v~v~~~~tv~ea~~~m~~~--~~s~~PVvd~~~~lvGiVt~rDL~  142 (496)
T 4fxs_A           89 KIFEAGVVTHPVTVRPEQTIADVMELTHYH--GFAGFPVVTENNELVGIITGRDVR  142 (496)
T ss_dssp             HHCCC--CBCCCCBCSSSBHHHHHHHHTSS--CCCEEEEECSSSBEEEEEEHHHHT
T ss_pred             cccccccccCceEECCCCCHHHHHHHHHHc--CCcEEEEEccCCEEEEEEEHHHHh
Confidence            345667888899999999999999999999  999999999889999999999997

>3org_A CMCLC; transporter, transport protein; 3.50A {Cyanidioschyzon merolae}

Probab=97.43  E-value=9.7e-05  Score=71.94  Aligned_cols=55  Identities=13%  Similarity=0.023  Sum_probs=48.4

Q ss_pred             hhhhccccCCCCccccCCCcHHHHHHHHHhcCcceEEEEcCCCcEEEEeeHHHHHHHH
Q 019775          210 KVQDVMKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRRTL  267 (336)
Q Consensus       210 ~v~~im~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~it~~dl~~~~  267 (336)
                      +++++|.+++  +++++++++.++.+.|.+++.+.+||+ ++|+++|+||++|+.+.+
T Consensus       569 ~v~~iMt~~p--itV~~~~~l~ea~~~M~~~~i~~lpVv-e~G~lvGIVT~~Dll~~~  623 (632)
T 3org_A          569 SLVVPCDVSP--IVVTSYSLVRQLHFLFVMLMPSMIYVT-ERGKLVGIVEREDVAYGY  623 (632)
T ss_dssp             --CCSCCCCC--CEEETTCBHHHHHHHHHHTCCSEEEEE-ETTEEEEEEEGGGTEECC
T ss_pred             ccchhhcCCC--ceecCCCcHHHHHHHHHhcCCCEEEEE-ECCEEEEEEehhhHHHHH
Confidence            5889999985  499999999999999999999999999 689999999999987643

>1zfj_A Inosine monophosphate dehydrogenase; IMPDH, CBS domains, oxidoreductase; HET: IMP; 1.90A {Streptococcus pyogenes} SCOP: c.1.5.1 d.37.1.1

Probab=97.29  E-value=0.00044  Score=65.29  Aligned_cols=59  Identities=17%  Similarity=0.168  Sum_probs=53.6

Q ss_pred             hhhhhcccc-CCCCccccCCCcHHHHHHHHHhcCcceEEEEcCCCcEEEEeeHHHHHHHHHh
Q 019775          209 FKVQDVMKP-QKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRRTLKA  269 (336)
Q Consensus       209 ~~v~~im~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~it~~dl~~~~~~  269 (336)
                      .+++++|.+ .  +++++++.++.++++.|.+++...+||+|++|+++|++|.+|+...+..
T Consensus       152 ~~v~~im~~~~--~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~~g~lvGivt~~Dil~~~~~  211 (491)
T 1zfj_A          152 APISEHMTSEH--LVTAAVGTDLETAERILHEHRIEKLPLVDNSGRLSGLITIKDIEKVIEF  211 (491)
T ss_dssp             SBTTTSCCCSC--CCCEETTCCHHHHHHHHHHTTCSEEEEECTTSBEEEEEEHHHHHHHHHC
T ss_pred             CcHHHHcCCCC--CEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEHHHHHHHHhc
Confidence            478899997 4  4589999999999999999999999999999999999999999998763

>4avf_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase; 2.23A {Pseudomonas aeruginosa}

Probab=97.19  E-value=5.3e-05  Score=71.34  Aligned_cols=62  Identities=24%  Similarity=0.335  Sum_probs=0.0

Q ss_pred             hhhhhhhccccCCCCccccCCCcHHHHHHHHHhcCcceEEEEcCCCcEEEEeeHHHHHHHHH
Q 019775          207 LIFKVQDVMKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRRTLK  268 (336)
Q Consensus       207 ~~~~v~~im~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~it~~dl~~~~~  268 (336)
                      ...+++++|.+..++++++++.++.+++++|.+++...+||+|++|+++|+||.+|+++...
T Consensus       145 ~~~~V~~vMtp~~~~vtv~~~~~l~ea~~~m~~~~i~~lpVVDe~g~lvGiIT~~Dil~~~~  206 (490)
T 4avf_A          145 AGDTVAAIMTPKDKLVTAREGTPLEEMKAKLYENRIEKMLVVDENFYLRGLVTFRDIEKAKT  206 (490)
T ss_dssp             --------------------------------------------------------------
T ss_pred             cCCcHHHHhccCCCCEEECCCCcHHHHHHHHHHcCCCEEEEEcCCCcEEEEEehHHhhhhcc
Confidence            34578999995322568999999999999999999999999999999999999999998754

>4af0_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase, GTP biosynthesis, drug resistance; HET: MOA IMP; 2.20A {Cryptococcus neoformans} PDB: 4af0_B*

Probab=97.10  E-value=7.5e-05  Score=69.53  Aligned_cols=59  Identities=17%  Similarity=0.175  Sum_probs=0.0

Q ss_pred             hhhhhhccccCCCCccccCCCcHHHHHHHHHhcCcceEEEEcCCCcEEEEeeHHHHHHHHH
Q 019775          208 IFKVQDVMKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRRTLK  268 (336)
Q Consensus       208 ~~~v~~im~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~it~~dl~~~~~  268 (336)
                      ..+|+++|.++  +++++.+.+++++.++|.+++...+||+|++++++|+||.+|+.+...
T Consensus       199 ~~~V~evMT~~--lvt~~~~~~leeA~~iL~~~kieklpVVd~~g~LvGlIT~kDi~k~~~  257 (556)
T 4af0_A          199 ETPIKSVMTTE--VVTGSSPITLEKANSLLRETKKGKLPIVDSNGHLVSLVARSDLLKNQN  257 (556)
T ss_dssp             -------------------------------------------------------------
T ss_pred             ceEhhhhcccc--eEEecCCCCHHHHHHHHHHccccceeEEccCCcEEEEEEechhhhhhh
Confidence            35789999986  679999999999999999999999999999999999999999987553

>1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural G joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.18A {Thermotoga maritima} SCOP: c.1.5.1

Probab=97.09  E-value=0.00016  Score=68.30  Aligned_cols=62  Identities=19%  Similarity=0.253  Sum_probs=5.3

Q ss_pred             hhhhhhccccCCCCccccCCCcHHHHHHHHHhcCcceEEEEcCCCcEEEEeeHHHHHHHHHh
Q 019775          208 IFKVQDVMKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRRTLKA  269 (336)
Q Consensus       208 ~~~v~~im~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~it~~dl~~~~~~  269 (336)
                      ..+++++|.+...+++++++.++.+++++|.+++...+||+|++|+++|+||..|++..+..
T Consensus       154 ~~~v~~im~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVVd~~g~lvGiIt~~Dll~~~~~  215 (494)
T 1vrd_A          154 SKKIKDLMTPREKLIVAPPDISLEKAKEILHQHRIEKLPLVSKDNKLVGLITIKDIMSVIEH  215 (494)
T ss_dssp             -------------------------------------------------------CHHHHTC
T ss_pred             CCcHHHHhCCCCCCeEECCCCCHHHHHHHHHHcCCcEEEEEcCCCeEEEEEEHHHHHhhhcc
Confidence            35789999972225689999999999999999999999999999999999999999998753

>4em6_D Glucose-6-phosphate isomerase; GPI, phosphoglucose isomerase phosphohexose isomerase, PHI, ssgcid; 1.90A {Brucella melitensis BV}

Probab=96.94  E-value=0.0029  Score=59.59  Aligned_cols=98  Identities=16%  Similarity=0.204  Sum_probs=71.2

Q ss_pred             hHHHHHHHHHHcC---------CCeEEEEeccchHHHHHHHHHHHHhc--CCeeeecC--CccccccccCCCCC-CcEEE
Q 019775           41 PHTLTFTQTLLKC---------RGTIFFTGVGKSGFVANKISQTLISL--GIKSGFLN--PLDALHGDIGILSS-DDILV  106 (336)
Q Consensus        41 ~~i~~~~~~i~~a---------~~~I~i~G~G~s~~~a~~~~~~l~~~--g~~~~~~~--~~~~~~~~~~~~~~-~dlvi  106 (336)
                      +.++++++.+.+.         =+.|.++|.|.|+.=...+...|...  +.+++++.  +...+...+..+++ +.++|
T Consensus       128 ~~i~~fa~~vrsg~~~g~tg~~i~~vV~IGIGGS~LGp~~v~eAL~~~~~~~~~~Fv~NvDp~~l~~~L~~l~~~~TLfi  207 (553)
T 4em6_D          128 DRMAAFADGIRSGALKGATGRKITDIVNIGIGGSDLGPVMATLALAPYHDEPRAHFVSNIDGAHIADTLSPLDPASTLII  207 (553)
T ss_dssp             HHHHHHHHHHHHTSSBCTTSCBCCEEEEECCGGGTHHHHHHHHHTGGGCCSSEEEEECCSSHHHHHHHHTTSCGGGEEEE
T ss_pred             HHHHHHHHHHHcCCcccCCCCceeeEEEEecccccHHHHHHHHHHhccCCCCeEEEEeCCCHHHHHHHHhhCCcCcEEEE
Confidence            4677788887652         05899999999998777777777643  67777776  34445555555654 56788


Q ss_pred             EEeCCCCcHHHHHHHHHHHH----c------CCeEEEEeCCC
Q 019775          107 MFSKSGNTEELLKVVPCAKA----K------GAYLVSVTSVE  138 (336)
Q Consensus       107 ~iS~sG~~~~~~~~~~~ak~----~------g~~vi~IT~~~  138 (336)
                      ++|.||.|.|+...++.+++    +      +-++|+||.+.
T Consensus       208 ViSKSgtT~ET~~n~~~ar~wl~~~~~~~~~~kh~vAvTt~~  249 (553)
T 4em6_D          208 VASKTFTTIETMTNAQTARKWVADTLGEAAVGAHFAAVSTAL  249 (553)
T ss_dssp             EECSSSCCHHHHHHHHHHHHHHHHHHCGGGGGGTEEEECSCH
T ss_pred             EEeCCCCCHHHHHHHHHHHHHHHHhcCcccccCeEEEEcCCc
Confidence            99999999999987776653    1      24699999764

>3ljk_A Glucose-6-phosphate isomerase; structural genomics, IDP02733, cytoplasm, gluconeogenesis, glycolysis; HET: MSE MES; 1.48A {Francisella tularensis} PDB: 3m5p_A* 3q7i_A* 3q88_A*

Probab=96.92  E-value=0.0032  Score=59.14  Aligned_cols=98  Identities=20%  Similarity=0.270  Sum_probs=71.7

Q ss_pred             hHHHHHHHHHHcC---------CCeEEEEeccchHHHHHHHHHHHHhc---CCeeeecC--CccccccccCCCCC-CcEE
Q 019775           41 PHTLTFTQTLLKC---------RGTIFFTGVGKSGFVANKISQTLISL---GIKSGFLN--PLDALHGDIGILSS-DDIL  105 (336)
Q Consensus        41 ~~i~~~~~~i~~a---------~~~I~i~G~G~s~~~a~~~~~~l~~~---g~~~~~~~--~~~~~~~~~~~~~~-~dlv  105 (336)
                      +.++++++.+.+.         =+.|.++|.|.|+.=...+...|...   +.+++++.  +...+...+..+++ +.++
T Consensus       118 ~~m~~fa~~vrsg~~~g~tg~~i~~VV~IGIGGS~LGp~~v~eaL~~~~~~~~~~~Fv~NvDp~~l~~~L~~l~~~~TLf  197 (543)
T 3ljk_A          118 QRVKELVEKVVSGRWRGFSGKKITDIVNIGIGGSDLGPKMVVRALQPYHCTDLKVHFVSNVDADSLLQALHVVDPETTLL  197 (543)
T ss_dssp             HHHHHHHHHHHTTCSBCTTSCBCCEEEEECCGGGTHHHHHHHHHTGGGCCSSCEEEEECCSSHHHHHHHHTTCCGGGEEE
T ss_pred             HHHHHHHHHHHcCCcccCCCCceeeEEEEecccchHHHHHHHHHhhhhccCCCeEEEEeCCCHHHHHHHHhhCCcccEEE
Confidence            5677888888752         05899999999998777777777643   67788876  34445555555655 5678


Q ss_pred             EEEeCCCCcHHHHHHHHHHHH----c-------CCeEEEEeCCC
Q 019775          106 VMFSKSGNTEELLKVVPCAKA----K-------GAYLVSVTSVE  138 (336)
Q Consensus       106 i~iS~sG~~~~~~~~~~~ak~----~-------g~~vi~IT~~~  138 (336)
                      |++|.||.|.|+...++.+++    +       .-++|+||.+.
T Consensus       198 iViSKSgtT~ET~~n~~~ar~wl~~~~g~~~~~~khfvAvTt~~  241 (543)
T 3ljk_A          198 IIASKSFSTEETLLNSISAREWLLDHYEDEKAVANHFVAISSKL  241 (543)
T ss_dssp             EEECTTSCCHHHHHHHHHHHHHHHHHHCCGGGGGGTEEEECSCH
T ss_pred             EEecCCCCCHHHHHHHHHHHHHHHHhcCCcccccCeEEEEcCCh
Confidence            899999999999988776663    2       23589999864

>2cu0_A Inosine-5'-monophosphate dehydrogenase; structural genomics, pyrococcus horikoshii OT3, riken structural genomics/PROT initiative, RSGI; HET: XMP; 2.10A {Pyrococcus horikoshii} SCOP: c.1.5.1

Probab=96.90  E-value=0.00015  Score=68.30  Aligned_cols=59  Identities=24%  Similarity=0.211  Sum_probs=0.4

Q ss_pred             hhhhhhccccCCCCccccCCCcHHHHHHHHHhcCcceEEEEcCCCcEEEEeeHHHHHHHHH
Q 019775          208 IFKVQDVMKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRRTLK  268 (336)
Q Consensus       208 ~~~v~~im~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~it~~dl~~~~~  268 (336)
                      ..+++++|.++  +++++++.++.++++.|.+++...+||+|++|+++|++|.+|++....
T Consensus       149 ~~~v~~im~~~--~~~v~~~~~l~eal~~m~~~~~~~lpVVde~g~lvGiiT~~Dil~~~~  207 (486)
T 2cu0_A          149 GKLVKELMTKE--VITVPESIEVEEALKIMIENRIDRLPVVDERGKLVGLITMSDLVARKK  207 (486)
T ss_dssp             ------------------------------------------------------------C
T ss_pred             CCCHHHHccCC--CeEECCcCcHHHHHHHHHHcCCCEEEEEecCCeEEEEEEHHHHHHhhh
Confidence            45789999875  458999999999999999999999999999999999999999998754

>3ujh_A Glucose-6-phosphate isomerase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: G6Q; 2.10A {Toxoplasma gondii}

Probab=96.89  E-value=0.004  Score=58.82  Aligned_cols=98  Identities=15%  Similarity=0.133  Sum_probs=70.9

Q ss_pred             hHHHHHHHHHHcCC---------CeEEEEeccchHHHHHHHHHHHHh--------cCCeeeecC--CccccccccCCCCC
Q 019775           41 PHTLTFTQTLLKCR---------GTIFFTGVGKSGFVANKISQTLIS--------LGIKSGFLN--PLDALHGDIGILSS  101 (336)
Q Consensus        41 ~~i~~~~~~i~~a~---------~~I~i~G~G~s~~~a~~~~~~l~~--------~g~~~~~~~--~~~~~~~~~~~~~~  101 (336)
                      +.++++++.+.+..         +.|.++|.|.|+.=...+...|..        -+.+++++.  +...+...+..+++
T Consensus       129 ~~i~~fa~~vrsg~~~g~tg~~i~~vV~IGIGGS~LGp~~v~eAL~~~~~~~~~~~~~~~~FvsNvDp~~l~~~L~~L~~  208 (567)
T 3ujh_A          129 RRIRVFSEKVRSGEIRGHTGKKLVNVISIGIGGSYLGTEFVHLALAAEGYAAEKAHGRQIHFLANVDPVDVWLAERGFDP  208 (567)
T ss_dssp             HHHHHHHHHHHHTSSBCTTSCBCCEEEEECCGGGTHHHHHHHHHHHTCHHHHHHTTTCEEEEECCSSHHHHHHHHTTCCG
T ss_pred             HHHHHHHHHHHcCCcccCCCCcceeEEEEecccchHHHHHHHHHhccccccccccCCCeEEEEeCCCHHHHHHHHhhCCc
Confidence            46777778776431         589999999999766666666653        467888877  44555555666655


Q ss_pred             -CcEEEEEeCCCCcHHHHHHHHHHHH----cC--------CeEEEEeCCC
Q 019775          102 -DDILVMFSKSGNTEELLKVVPCAKA----KG--------AYLVSVTSVE  138 (336)
Q Consensus       102 -~dlvi~iS~sG~~~~~~~~~~~ak~----~g--------~~vi~IT~~~  138 (336)
                       +.++|++|.||.|.|+....+.+|+    +.        -++|+||++.
T Consensus       209 ~~TlfiViSKSgtT~ET~~n~~~~r~wl~~~~~~g~~~~~kh~vAvT~~~  258 (567)
T 3ujh_A          209 EETLVVVISKTFTTAETMMNARSVRDWYLHHYKGDERALGAHFCAVSTNL  258 (567)
T ss_dssp             GGEEEEEECSSSCCHHHHHHHHHHHHHHHHHTTTCGGGSGGGEEEECSCH
T ss_pred             ccEEEEEEeCCCCCHHHHHHHHHHHHHHHHhccccchhhcCeEEEECCCh
Confidence             4578889999999999888877663    21        2599999754

>1tzb_A Glucose-6-phosphate isomerase, conjectural; enzyme, crenarchaeon, hyperthermophIle, PGI family; 1.16A {Pyrobaculum aerophilum} SCOP: c.80.1.1 PDB: 1tzc_A* 1x9h_A* 1x9i_A*

Probab=96.78  E-value=0.0089  Score=52.48  Aligned_cols=118  Identities=10%  Similarity=-0.003  Sum_probs=82.9

Q ss_pred             hHHHHHHHHHHcCCCeEEEEeccchHHHHHHHHHHHHhc-CCeeeecCCccccccccCCCCCCcEEEEEeC-CCC--cHH
Q 019775           41 PHTLTFTQTLLKCRGTIFFTGVGKSGFVANKISQTLISL-GIKSGFLNPLDALHGDIGILSSDDILVMFSK-SGN--TEE  116 (336)
Q Consensus        41 ~~i~~~~~~i~~a~~~I~i~G~G~s~~~a~~~~~~l~~~-g~~~~~~~~~~~~~~~~~~~~~~dlvi~iS~-sG~--~~~  116 (336)
                      +..+++++.+ .  ++++++|.|..+.+|.+.+.+|.+. ..++......+..+.....+++  .+|++.- .+.  ...
T Consensus       169 ~~~~~la~~~-~--~~~~~lG~g~~~~~A~e~alkl~E~~~~~a~~~~~~e~~HGp~~~i~~--~vi~~~~~~~~~~~~~  243 (302)
T 1tzb_A          169 ALIHKLVEEF-Q--KRPTIIAAESMRGVAYRVKNEFNENAKIEPSVEILPEAHHNWIEGSER--AVVALTSPHIPKEHQE  243 (302)
T ss_dssp             HHHHHHHHHH-T--TCCEEEEEGGGHHHHHHHHHHHHHTTCCCCEEEEETGGGGTHHHHCCS--CEEEEECSSSCHHHHH
T ss_pred             hHHHHHHHHh-C--CeEEEEeCCcchHHHHHHHHHHHHhcCcceeccccchhcccceEEecc--cEEEEECCCccHHHHH
Confidence            5677788888 4  4899999999999999999999987 5555556556666666666766  4555543 444  245


Q ss_pred             HHHHHHHHHHcCCeEEEEeCCCCCccccccCEEEEcCCCcccCCCCCCChhHHHHHHHHHHHHHHHHHhhcCCChHH
Q 019775          117 LLKVVPCAKAKGAYLVSVTSVEGNALAAVCDMNVHLPVERELCPFDLAPVTSTAIQMVFGDTVAIAMMGARNLTRDE  193 (336)
Q Consensus       117 ~~~~~~~ak~~g~~vi~IT~~~~s~l~~~ad~~i~~~~~~~~~~~~~~~~~s~~~~~~l~d~l~~~~~~~~~~~~~~  193 (336)
                      ..+.++..+  |++++.|+...                  .          ..++....++++...+...++.++++
T Consensus       244 ~~~~~~e~~--g~~v~~i~~~~------------------~----------~~l~~~~~~q~la~~~A~~~G~dpd~  290 (302)
T 1tzb_A          244 RVKATVEIV--GGSIYAVEMHP------------------K----------GVLSFLRDVGIASVKLAEIRGVNPLA  290 (302)
T ss_dssp             HHHHHHHHH--CCEEEECCCSH------------------H----------HHHHHHHHHHHHHHHHHHHHTCCSSC
T ss_pred             HHHHHHHHh--CceEEEEEcCC------------------C----------CcchhhHHHHHHHHHHHHHhCcCCCC
Confidence            666677777  99999998642                  0          01225677888888888887765543

>1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A*

Probab=96.70  E-value=0.00057  Score=64.87  Aligned_cols=67  Identities=13%  Similarity=0.142  Sum_probs=34.3

Q ss_pred             eHHHHHHHHHhcCCchhhhhHhhhcCCCCeeeCCCccHHHHHHHhcCCCCCccEeEEEeC---CCcEEEEEehhhHhh
Q 019775          259 TDGDLRRTLKASGEGIFKLTVGEMCNRSPRTIGPDAMAVEAMQKMESPPSPVQFLPVINR---QNILIGIVTLHGLVS  333 (336)
Q Consensus       259 t~~dl~~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~l~Vv~~---~~~~iGiit~~di~~  333 (336)
                      +.+++...+..      -..+.++|.+++.++.+++++.++++.|.++  +...+||+|+   +|+++|+||..|+.+
T Consensus        96 t~e~~~~~v~~------v~~~~~im~~~~~~v~~~~tv~ea~~~m~~~--~~~~~pVvd~~~~~~~lvGiVt~~Dl~~  165 (514)
T 1jcn_A           96 TPEFQANEVRK------VKNFEQGFITDPVVLSPSHTVGDVLEAKMRH--GFSGIPITETGTMGSKLVGIVTSRDIDF  165 (514)
T ss_dssp             CHHHHHHHHHH------HHTCCTTSCSSCCCCCC-------------------CEESCC--------CCEECTTTTC-
T ss_pred             CHHHHHHHHHh------hhhhhhccccCCEEECCCCCHHHHHHHHHhc--CCCEEEEEeCCCcCCEEEEEEEHHHHHh
Confidence            56666654432      2356678888899999999999999999999  8999999987   589999999999865

>3qki_A Glucose-6-phosphate isomerase; structural genomics, structural genomics consortium, SGC; 1.92A {Plasmodium falciparum} PDB: 3pr3_A

Probab=96.51  E-value=0.013  Score=55.67  Aligned_cols=98  Identities=16%  Similarity=0.218  Sum_probs=68.3

Q ss_pred             hHHHHHHHHHHcCC---------CeEEEEeccchHHHHHHHHHHHHhc--------C-----------------Ceeeec
Q 019775           41 PHTLTFTQTLLKCR---------GTIFFTGVGKSGFVANKISQTLISL--------G-----------------IKSGFL   86 (336)
Q Consensus        41 ~~i~~~~~~i~~a~---------~~I~i~G~G~s~~~a~~~~~~l~~~--------g-----------------~~~~~~   86 (336)
                      +.++++++.+.+..         +.|..+|.|.|+.=...+...|...        +                 .+++++
T Consensus       144 ~~i~~fa~~vr~g~~~g~tgk~~~~vV~IGIGGS~LGp~~v~eAL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fv  223 (597)
T 3qki_A          144 KKIEKYSDDIRNGVIKTCKNTKFKNVICIGIGGSYLGTEFVYEAMKYYYYNMELNKNEKDQVNNFNNNYDQDNVFNVRFL  223 (597)
T ss_dssp             HHHHHHHHHHHTTSSCCTTSSCCCEEEEECCGGGTHHHHHHHHHHHHHHHHHTTSCCCTTCCCCTTCCCSSTTCCEEEEE
T ss_pred             HHHHHHHHHHHcCCcccCCCCcceeEEEEecccccHHHHHHHHHhccchhcccccccccccccccccccccccCceEEEE
Confidence            46777888876531         5899999999996555555544421        2                 237777


Q ss_pred             C--CccccccccCCCCC-CcEEEEEeCCCCcHHHHHHHHHHHH----c-C------CeEEEEeCCC
Q 019775           87 N--PLDALHGDIGILSS-DDILVMFSKSGNTEELLKVVPCAKA----K-G------AYLVSVTSVE  138 (336)
Q Consensus        87 ~--~~~~~~~~~~~~~~-~dlvi~iS~sG~~~~~~~~~~~ak~----~-g------~~vi~IT~~~  138 (336)
                      .  |...+...+..+++ +.++|++|.||.|.|+....+.+|+    + |      -.+|+||++.
T Consensus       224 sNvDp~~l~~~L~~Ld~~~TLfiViSKSgtT~ET~~n~~~~r~wl~~~~g~~~~~~kh~vAvT~~~  289 (597)
T 3qki_A          224 ANVDPNDVNRAIQNLDQYDTLVIIISKTFTTAETMLNARSIKKWLSLKIKDDENLSKHMVAVSTNL  289 (597)
T ss_dssp             CCSSHHHHHHHHTTCCGGGEEEEEECSSSCCHHHHHHHHHHHHHHTTTCCSHHHHGGGEEEECSCH
T ss_pred             eCCCHHHHHHHHhhCCcccEEEEEecCCCCCHHHHHHHHHHHHHHHHhcCCcccccCeEEEECCCh
Confidence            6  45556666666665 4578888999999999998777765    2 3      2599999864

>3hjb_A Glucose-6-phosphate isomerase; PGI, IDP01329, gluconeogenesi glycolysis, structural genomics, center for STRU genomics of infectious diseases; HET: PG4; 1.50A {Vibrio cholerae} PDB: 3nbu_A

Probab=96.24  E-value=0.013  Score=55.25  Aligned_cols=98  Identities=12%  Similarity=0.240  Sum_probs=70.6

Q ss_pred             hHHHHHHHHHHcCC---------CeEEEEeccchHHHHHHHHHHHHhc--CCeeeecC--CccccccccCCCCC-CcEEE
Q 019775           41 PHTLTFTQTLLKCR---------GTIFFTGVGKSGFVANKISQTLISL--GIKSGFLN--PLDALHGDIGILSS-DDILV  106 (336)
Q Consensus        41 ~~i~~~~~~i~~a~---------~~I~i~G~G~s~~~a~~~~~~l~~~--g~~~~~~~--~~~~~~~~~~~~~~-~dlvi  106 (336)
                      +.++++++.+.+..         +.|.++|.|.|+.=...+...|...  +.+++++.  +...+...+..+++ +.++|
T Consensus       150 ~~i~~fa~~vrsg~~~g~tg~~i~~VV~IGIGGS~LGp~~v~eAL~~~~~~~~l~FvsNvDp~~l~~~L~~Ld~~~TLfi  229 (574)
T 3hjb_A          150 AKMKAFSERVIGGEWKGFTGKAITDVVNIGIGGSDLGPYMVTEALVPYKNHLTVHFVSNVDGTHMAETLKNVDPETTLFL  229 (574)
T ss_dssp             HHHHHHHHHHHHTCSBCTTSCBCCEEEEECCGGGTHHHHHHHHHTGGGCCSCEEEEECCSSHHHHHHHHTTCCGGGEEEE
T ss_pred             HHHHHHHHHHHcCCcccCCCCCCCeEEEEecccchHHHHHHHHHhhcccCCCeEEEEeCCCHHHHHHHHhcCCcccEEEE
Confidence            46778888876521         4899999999998777777777644  67787776  34445555666655 46788


Q ss_pred             EEeCCCCcHHHHHHHHHHHH----c-C------CeEEEEeCCC
Q 019775          107 MFSKSGNTEELLKVVPCAKA----K-G------AYLVSVTSVE  138 (336)
Q Consensus       107 ~iS~sG~~~~~~~~~~~ak~----~-g------~~vi~IT~~~  138 (336)
                      ++|.||.|.|+...++.+|+    + |      -..|+||.+.
T Consensus       230 ViSKSgtT~ET~~n~~~ar~wl~~~~~~~~~~~khfVavTt~~  272 (574)
T 3hjb_A          230 VASKTFTTQETMTNAHTARDWFLKAAGDEAHVAKHFAALSTNG  272 (574)
T ss_dssp             EECSSSCCHHHHHHHHHHHHHHHHHHCSGGGGGGTEEEESSCH
T ss_pred             EeCCCCCCHHHHHHHHHHHHHHHHhcCCcchhcCEEEEEcCCh
Confidence            89999999999887765542    2 2      3589999763

>2zkq_b 40S ribosomal protein SA; protein-RNA complex, 40S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}

Probab=96.20  E-value=0.048  Score=46.90  Aligned_cols=113  Identities=10%  Similarity=0.033  Sum_probs=69.4

Q ss_pred             CeEEEEeccchH-HHHHHHHHHHHhcCCeeeecC--CccccccccCCCCCCcEEEEEeCCCCcHHHHHHHHHHHHcCCeE
Q 019775           55 GTIFFTGVGKSG-FVANKISQTLISLGIKSGFLN--PLDALHGDIGILSSDDILVMFSKSGNTEELLKVVPCAKAKGAYL  131 (336)
Q Consensus        55 ~~I~i~G~G~s~-~~a~~~~~~l~~~g~~~~~~~--~~~~~~~~~~~~~~~dlvi~iS~sG~~~~~~~~~~~ak~~g~~v  131 (336)
                      ++|.|+|+.... .+...++.+   .|...+.-.  ++..-......+...|++|++....+    ..+++.|++.|++|
T Consensus        72 ~~ILfVgTk~~aq~~V~k~A~~---~g~~yv~~RWlgG~LTN~~t~~f~~PdlliV~Dp~~e----~~AI~EA~~lgIPv  144 (295)
T 2zkq_b           72 ADVSVISSRNTGQRAVLKFAAA---TGATPIAGRFTPGTFTNQIQAAFREPRLLVVTDPRAD----HQPLTEASYVNLPT  144 (295)
T ss_dssp             GGEEEEECSHHHHHHHHHHHHH---HCCEEEESSCCCC-CCCTTCSSCCCCSEEEESCTTTT----HHHHHHHHHHTCCE
T ss_pred             CeEEEEeCcHHHHHHHHHHHHH---hCCceecceEecccccCcccccccCCCeEEEeCCCcc----hhHHHHHHHhCCCE
Confidence            589999987543 233333333   343332211  11111111234567899888865443    45678899999999


Q ss_pred             EEEeCCCCCccccccCEEEEcCCCcccCCCCCCChhHHHHHHHHHHHHHHHHHhhcC
Q 019775          132 VSVTSVEGNALAAVCDMNVHLPVERELCPFDLAPVTSTAIQMVFGDTVAIAMMGARN  188 (336)
Q Consensus       132 i~IT~~~~s~l~~~ad~~i~~~~~~~~~~~~~~~~~s~~~~~~l~d~l~~~~~~~~~  188 (336)
                      |+|.+. +++. ++.|+.|.+...            |.-+.-+++.+|...+.+.++
T Consensus       145 IalvDT-n~dp-~~VDy~IP~Ndd------------s~~SI~Li~~lla~aIl~~rg  187 (295)
T 2zkq_b          145 IALCNT-DSPL-RYVDIAIPCNNK------------GAHSVGLMWWMLAREVLRMRG  187 (295)
T ss_dssp             EEEECT-TCCC-TTCSEEEESCSS------------CHHHHHHHHHHHHHHHHHCCS
T ss_pred             EEEecC-CCCc-ccCCEEEeCCCC------------ccchHHHHHHHHHHHHHHhcC
Confidence            999986 4554 678988777554            335556777888777776654

>3bch_A 40S ribosomal protein SA; laminin receptor, P40 ribosomal protein, acetylation, cytoplasm, phosphorylation, polymorphism; 2.15A {Homo sapiens}

Probab=95.98  E-value=0.075  Score=44.67  Aligned_cols=124  Identities=10%  Similarity=0.053  Sum_probs=73.1

Q ss_pred             HHHHHHHHHH---cCCCeEEEEeccchH-HHHHHHHHHHHhcCCeee---ecCCccccccccCCCCCCcEEEEEeCCCCc
Q 019775           42 HTLTFTQTLL---KCRGTIFFTGVGKSG-FVANKISQTLISLGIKSG---FLNPLDALHGDIGILSSDDILVMFSKSGNT  114 (336)
Q Consensus        42 ~i~~~~~~i~---~a~~~I~i~G~G~s~-~~a~~~~~~l~~~g~~~~---~~~~~~~~~~~~~~~~~~dlvi~iS~sG~~  114 (336)
                      .+..+++.+.   +. ++|.|+|+.... .+...++.+   .|...+   +++ +..--.........|++|++....+ 
T Consensus        90 ~L~~A~~~i~~~~~~-~~iLfVgTk~~aq~~V~~~A~~---~g~~yv~~RWlg-G~LTN~~~~~f~~PdlliV~Dp~~e-  163 (253)
T 3bch_A           90 KLLLAARAIVAIENP-ADVSVISSRNTGQRAVLKFAAA---TGATPIAGRFTP-GTFTNQIQAAFREPRLLVVTDPRAD-  163 (253)
T ss_dssp             HHHHHHHHHHTCSSG-GGEEEEECSHHHHHHHHHHHHH---HCCEEEESCCCT-TTTTCCSCSTTCSCSEEEESCTTTT-
T ss_pred             HHHHHHHHHHHHhCC-CeEEEEeCCHHHHHHHHHHHHH---hCCeeecceecC-CcccCccccccCCCCEEEEECCCcc-
Confidence            3445555553   33 589999987643 333333333   343332   222 1111111234567889888865433 


Q ss_pred             HHHHHHHHHHHHcCCeEEEEeCCCCCccccccCEEEEcCCCcccCCCCCCChhHHHHHHHHHHHHHHHHHhhcC
Q 019775          115 EELLKVVPCAKAKGAYLVSVTSVEGNALAAVCDMNVHLPVERELCPFDLAPVTSTAIQMVFGDTVAIAMMGARN  188 (336)
Q Consensus       115 ~~~~~~~~~ak~~g~~vi~IT~~~~s~l~~~ad~~i~~~~~~~~~~~~~~~~~s~~~~~~l~d~l~~~~~~~~~  188 (336)
                         ..+++.|...|++||+|.+. +++. .+.|+.|.+...            +.-+.-+++.+|...+.+.++
T Consensus       164 ---~~AI~EA~~lgIPvIalvDT-n~dp-~~VDy~IP~Ndd------------s~~SI~Li~~lla~aIl~grg  220 (253)
T 3bch_A          164 ---HQPLTEASYVNLPTIALCNT-DSPL-RYVDIAIPCNNK------------GAHSVGLMWWMLAREVLRMRG  220 (253)
T ss_dssp             ---HHHHHHHHHTTCCEEEEECT-TCCC-TTCSEEEESCCS------------SHHHHHHHHHHHHHHHHHHHT
T ss_pred             ---chHHHHHHHhCCCEEEEEcC-CCCc-ccCceEeecCCc------------chhhHHHHHHHHHHHHHHhcC
Confidence               45678899999999999986 4444 578888776543            334456666777766666544

>1vi6_A 30S ribosomal protein S2P; structural genomics, ribosome; 1.95A {Archaeoglobus fulgidus} SCOP: c.23.15.1 PDB: 1vi5_A

Probab=95.81  E-value=0.19  Score=41.11  Aligned_cols=124  Identities=12%  Similarity=0.063  Sum_probs=73.6

Q ss_pred             HHHHHHHHHH--cCCCeEEEEeccchH-HHHHHHHHHHHhcCCeee---ecCCccccccccCCCCCCcEEEEEeCCCCcH
Q 019775           42 HTLTFTQTLL--KCRGTIFFTGVGKSG-FVANKISQTLISLGIKSG---FLNPLDALHGDIGILSSDDILVMFSKSGNTE  115 (336)
Q Consensus        42 ~i~~~~~~i~--~a~~~I~i~G~G~s~-~~a~~~~~~l~~~g~~~~---~~~~~~~~~~~~~~~~~~dlvi~iS~sG~~~  115 (336)
                      .+.++++.+.  +. ++|.++|+.... .+...++.+-   |...+   +++ +..--.........|++|++....+  
T Consensus        55 ~L~~A~~~i~~i~~-~~iLfVgTk~~~~~~V~~~A~~~---g~~~v~~rwlg-G~LTN~~~~~f~~PdlliV~Dp~~e--  127 (208)
T 1vi6_A           55 RIRVAAKFLSRYEP-SKILLVAARQYAHKPVQMFSKVV---GSDYIVGRFIP-GTLTNPMLSEYREPEVVFVNDPAID--  127 (208)
T ss_dssp             HHHHHHHHHTTSCG-GGEEEEECSGGGHHHHHHHHHHH---CCEEEESSCCT-TTTTCTTSTTCCCCSEEEESCTTTT--
T ss_pred             HHHHHHHHHHhcCC-CEEEEEeCCHHHHHHHHHHHHHh---CCeeecCEECC-CcccChhhHhhCCCCEEEEECCCcc--
Confidence            3445555554  34 589999987543 3333444433   33332   222 1111111334567888888865433  


Q ss_pred             HHHHHHHHHHHcCCeEEEEeCCCCCccccccCEEEEcCCCcccCCCCCCChhHHHHHHHHHHHHHHHHHhhcC
Q 019775          116 ELLKVVPCAKAKGAYLVSVTSVEGNALAAVCDMNVHLPVERELCPFDLAPVTSTAIQMVFGDTVAIAMMGARN  188 (336)
Q Consensus       116 ~~~~~~~~ak~~g~~vi~IT~~~~s~l~~~ad~~i~~~~~~~~~~~~~~~~~s~~~~~~l~d~l~~~~~~~~~  188 (336)
                        ..++++|...|++||++.+. +++. .+.|+.|.+...            +.-+.-+++.+|...+.+.++
T Consensus       128 --~~ai~EA~~l~IPvIalvDT-n~~p-~~Vd~~IP~Ndd------------s~~SI~Li~~~la~ail~grg  184 (208)
T 1vi6_A          128 --KQAVSEATAVGIPVVALCDS-NNSS-ADVDLVIPTNNK------------GRRALAIVYWLLAREIAKIRG  184 (208)
T ss_dssp             --HHHHHHHHHTTCCEEEEECT-TCCC-TTCSEEEESCCS------------CHHHHHHHHHHHHHHHHHHHT
T ss_pred             --hhHHHHHHHhCCCEEEEeCC-CCCc-cccCEEEeCCCC------------chhHHHHHHHHHHHHHHHHhC
Confidence              35677888999999999986 5554 578988776543            334445666777666666554

>3iz6_A 40S ribosomal protein SA (S2P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=95.75  E-value=0.22  Score=42.79  Aligned_cols=118  Identities=8%  Similarity=-0.021  Sum_probs=69.7

Q ss_pred             HcCCCeEEEEeccchH-HHHHHHHHHHHhcCCeeeecCCccccccccCCCCCCcEEEEEeCCCCcHHHHHHHHHHHHcCC
Q 019775           51 LKCRGTIFFTGVGKSG-FVANKISQTLISLGIKSGFLNPLDALHGDIGILSSDDILVMFSKSGNTEELLKVVPCAKAKGA  129 (336)
Q Consensus        51 ~~a~~~I~i~G~G~s~-~~a~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~dlvi~iS~sG~~~~~~~~~~~ak~~g~  129 (336)
                      .+. .+|.|+|+.... .+...++.+-...-++-..++ +..-..........|++|++....+    ..+++.|...|+
T Consensus        73 ~~~-~~ILfVgTk~~aq~aV~k~A~~tG~~yV~~RWlg-GtLTN~~t~~f~ePdllvV~Dp~~d----~qAI~EA~~lnI  146 (305)
T 3iz6_A           73 ENP-QDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTP-GTFTNQLQTSFSEPRLLILTDPRTD----HQPIKESALGNI  146 (305)
T ss_dssp             TSS-CCEEEECCSHHHHHHHHHHHHHHTCEEECSCCCT-TTTTTTTTSCSSCCSEEEESCTTTT----HHHHHHHHHHTC
T ss_pred             hCC-CeEEEEeCcHHHHHHHHHHHHHhCCccccCcccC-CcccCcccccccCCceeEEeCcccc----hHHHHHHHHcCC
Confidence            344 589999987643 333344444322111111222 1111111234578899998875444    455678888999


Q ss_pred             eEEEEeCCCCCccccccCEEEEcCCCcccCCCCCCChhHHHHHHHHHHHHHHHHHhhcC
Q 019775          130 YLVSVTSVEGNALAAVCDMNVHLPVERELCPFDLAPVTSTAIQMVFGDTVAIAMMGARN  188 (336)
Q Consensus       130 ~vi~IT~~~~s~l~~~ad~~i~~~~~~~~~~~~~~~~~s~~~~~~l~d~l~~~~~~~~~  188 (336)
                      +||+|++. ++++ .+.|+.|.+.....            -+.-+++.+|...+...++
T Consensus       147 PtIALvDT-nsdp-~~VDy~IP~NDds~------------rSI~Li~~lLA~aVl~~rg  191 (305)
T 3iz6_A          147 PTIAFCDT-DSPM-RYVDIGIPANNKGK------------QSIGCLFWLLARMVLQMRG  191 (305)
T ss_dssp             CEEEEECT-TSCG-GGCSEEEESCCSST------------HHHHHHHHHHHHHHHHTTS
T ss_pred             CEEEEEcC-CCCc-cccceEEeCCCCCc------------cHHHHHHHHHHHHHHHhcC
Confidence            99999986 5554 56899887755422            3445667777777776654

>3j20_B 30S ribosomal protein S2P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}

Probab=95.43  E-value=0.4  Score=38.96  Aligned_cols=114  Identities=15%  Similarity=0.145  Sum_probs=68.6

Q ss_pred             CeEEEEeccchH-HHHHHHHHHHHhcCCeeeecCC-ccccccccCCCCCCcEEEEEeCCCCcHHHHHHHHHHHHcCCeEE
Q 019775           55 GTIFFTGVGKSG-FVANKISQTLISLGIKSGFLNP-LDALHGDIGILSSDDILVMFSKSGNTEELLKVVPCAKAKGAYLV  132 (336)
Q Consensus        55 ~~I~i~G~G~s~-~~a~~~~~~l~~~g~~~~~~~~-~~~~~~~~~~~~~~dlvi~iS~sG~~~~~~~~~~~ak~~g~~vi  132 (336)
                      .+|.++|+.... .+...++.+-...-..-.++++ .+.+  ........|++|++....+    ..+++.|...|+++|
T Consensus        65 ~~ilfV~tk~~~~~~V~k~A~~~g~~~v~~rw~gG~lTN~--~~~~~~~Pdllvv~Dp~~d----~~ai~EA~~l~IP~I  138 (202)
T 3j20_B           65 QSILAVSVRLYGQKPVKKFGEVTGARAIPGRFLPGTMTNP--AVKNFFEPDVLIVTDPRAD----HQAMREAVEIGIPIV  138 (202)
T ss_dssp             SCEEEECCCTTTHHHHHHHHHHHSCCCCCSSCCSSSSSCS--SSSSCCCCSEEEESCTTTS----HHHHHHHHHHTCCEE
T ss_pred             CeEEEEecChHHHHHHHHHHHHHCCceeCceecCCCcccH--hHHhccCCCeEEEeCCccc----hHHHHHHHHcCCCEE
Confidence            589999997643 4444455544433322233332 1111  1233457888888865443    456778889999999


Q ss_pred             EEeCCCCCccccccCEEEEcCCCcccCCCCCCChhHHHHHHHHHHHHHHHHHhhcC
Q 019775          133 SVTSVEGNALAAVCDMNVHLPVERELCPFDLAPVTSTAIQMVFGDTVAIAMMGARN  188 (336)
Q Consensus       133 ~IT~~~~s~l~~~ad~~i~~~~~~~~~~~~~~~~~s~~~~~~l~d~l~~~~~~~~~  188 (336)
                      ++.+. +++. .+.|+.|.+...            +.-+.-+++.+|...+.+.++
T Consensus       139 al~DT-n~~p-~~Vd~~IP~Ndd------------s~~Si~Li~~~la~avl~~rg  180 (202)
T 3j20_B          139 ALVDT-ENLL-SYVDLAIPTNNK------------GRKALALIYWILAREILYNRG  180 (202)
T ss_dssp             EEECT-TCCC-TTCCEEEECCCS------------SHHHHHHHHHHHHHHHHHHHT
T ss_pred             EEEcC-CCCc-cccCEEEeCCCC------------cHHHHHHHHHHHHHHHHHhcC
Confidence            99986 4554 568888776543            223445566666666666554

>2xzm_B RPS0E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_B

Probab=95.24  E-value=0.21  Score=41.75  Aligned_cols=115  Identities=11%  Similarity=0.012  Sum_probs=65.9

Q ss_pred             CeEEEEeccchH-HHHHHHHHHHHhcCC-eeeecCCccccccccCCCCCCcEEEEEeCCCCcHHHHHHHHHHHHcCCeEE
Q 019775           55 GTIFFTGVGKSG-FVANKISQTLISLGI-KSGFLNPLDALHGDIGILSSDDILVMFSKSGNTEELLKVVPCAKAKGAYLV  132 (336)
Q Consensus        55 ~~I~i~G~G~s~-~~a~~~~~~l~~~g~-~~~~~~~~~~~~~~~~~~~~~dlvi~iS~sG~~~~~~~~~~~ak~~g~~vi  132 (336)
                      ++|.|+|+.... .+...++.+-...-. +-..+++ ..--.........|++|++....    -..+++.|...|++||
T Consensus        67 ~~iLfVgtk~~~~~~V~~~A~~~g~~yv~~~RWlgG-~LTN~~t~~~~~PdlliV~Dp~~----e~~ai~EA~~l~IPvI  141 (241)
T 2xzm_B           67 EDVMVVCSRIYGQRAAIKFAGYTHCKSTSSSRWTPG-TLTNYQTLKYEEPRVLIVTDPRS----DFQAIKEASYVNIPVI  141 (241)
T ss_dssp             GGEEEECCSHHHHHHHHHHHHHHTCBCCCCSSCCTT-TTTCTTCTTCCCCSEEEESCTTT----THHHHHHHTTTTCCEE
T ss_pred             CeEEEEECCHHHHHHHHHHHHHhCCEEeccccccCC-cccCccccccCCCCEEEEECCCc----chHHHHHHHHhCCCEE
Confidence            589999987543 333334433332222 2223322 11111123456788888886442    2456778899999999


Q ss_pred             EEeCCCCCccccccCEEEEcCCCcccCCCCCCChhHHHHHHHHHHHHHHHHHhhcC
Q 019775          133 SVTSVEGNALAAVCDMNVHLPVERELCPFDLAPVTSTAIQMVFGDTVAIAMMGARN  188 (336)
Q Consensus       133 ~IT~~~~s~l~~~ad~~i~~~~~~~~~~~~~~~~~s~~~~~~l~d~l~~~~~~~~~  188 (336)
                      ++.+. +++. .+.|+.|.+  +..          |.-+.-+++.+|...+...++
T Consensus       142 alvDT-n~~p-~~VDy~IP~--Ndd----------s~~SI~Li~~~la~ail~~rg  183 (241)
T 2xzm_B          142 ALCDS-DSPL-AYVDVVIPC--NNR----------STESISMIYWMIAREVKILRG  183 (241)
T ss_dssp             ECCCS-SSCC-TTCCEECCS--CCS----------SHHHHHHHHHHHHHHHHHHHT
T ss_pred             EEecC-CCCc-ccccEEEeC--CCc----------ccchHHHHHHHHHHHHHHhhC
Confidence            99986 5554 467777554  433          334456666666666665543

>3u5c_A 40S ribosomal protein S0-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_A 3o30_A 3o2z_A 3u5g_A 3jyv_B* 1s1h_B

Probab=94.79  E-value=0.51  Score=39.58  Aligned_cols=125  Identities=7%  Similarity=0.004  Sum_probs=73.0

Q ss_pred             HHHHHHHHHH---cCCCeEEEEeccchH-HHHHHHHHHHHhcCCeeeecC--CccccccccCCCCCCcEEEEEeCCCCcH
Q 019775           42 HTLTFTQTLL---KCRGTIFFTGVGKSG-FVANKISQTLISLGIKSGFLN--PLDALHGDIGILSSDDILVMFSKSGNTE  115 (336)
Q Consensus        42 ~i~~~~~~i~---~a~~~I~i~G~G~s~-~~a~~~~~~l~~~g~~~~~~~--~~~~~~~~~~~~~~~dlvi~iS~sG~~~  115 (336)
                      .+..+++.|.   +. ++|.|+|+.... .+...++.+   .|...+.-.  ++..-......+...|++|++....+  
T Consensus        56 ~L~~A~~~i~~i~~~-~~vlfVgTk~~~q~~V~k~A~~---~g~~~v~~rwlgGtLTN~~t~~f~~PdllvV~Dp~~d--  129 (252)
T 3u5c_A           56 KLVLAARIIAAIPNP-EDVVAISSRTFGQRAVLKFAAH---TGATPIAGRFTPGSFTNYITRSFKEPRLVIVTDPRSD--  129 (252)
T ss_dssp             HHHHHHHHHTTSSSG-GGEEEEECSHHHHHHHHHHHHH---SSCEEEESCCCTTSSSCTTSTTCCCCSEEEESCTTTT--
T ss_pred             HHHHHHHHHHHHhcC-CEEEEEeCCcHHHHHHHHHHHH---hCCceecCcccCCcccChhhhhccCCceEEEeCCccc--
Confidence            3445555543   33 589999987533 233333333   343332211  22111111234567899998876544  


Q ss_pred             HHHHHHHHHHHcCCeEEEEeCCCCCccccccCEEEEcCCCcccCCCCCCChhHHHHHHHHHHHHHHHHHhhcC
Q 019775          116 ELLKVVPCAKAKGAYLVSVTSVEGNALAAVCDMNVHLPVERELCPFDLAPVTSTAIQMVFGDTVAIAMMGARN  188 (336)
Q Consensus       116 ~~~~~~~~ak~~g~~vi~IT~~~~s~l~~~ad~~i~~~~~~~~~~~~~~~~~s~~~~~~l~d~l~~~~~~~~~  188 (336)
                        ..+++.|...|++||++.+. ++++ .+.|+.|.+.....            -+.-+++.+|...+...++
T Consensus       130 --~~ai~EA~~l~IP~Ial~DT-n~~p-~~VD~~IP~Ndds~------------~SI~Li~~~La~aVl~~rg  186 (252)
T 3u5c_A          130 --AQAIKEASYVNIPVIALTDL-DSPS-EFVDVAIPCNNRGK------------HSIGLIWYLLAREVLRLRG  186 (252)
T ss_dssp             --HHHHHHHHTTTCCEEEEECT-TCCC-TTCSSEEECCTTST------------THHHHHHHHHHHHHHSSSS
T ss_pred             --hHHHHHHHHcCCCEEEEEcC-CCCc-ccCCEEEeCCCCCc------------chHHHHHHHHHHHHHHhcC
Confidence              45667888999999999986 5554 56899888755432            2334566667666666554

>1wiw_A Glucose-6-phosphate isomerase like protein; riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.00A {Thermus thermophilus} SCOP: c.80.1.1

Probab=94.65  E-value=0.0078  Score=52.33  Aligned_cols=39  Identities=13%  Similarity=0.048  Sum_probs=31.7

Q ss_pred             CCCCCCcEEEEEeCCCCcHHHHHHHHHHHHcCCeEEEEeCCCCCccccccC
Q 019775           97 GILSSDDILVMFSKSGNTEELLKVVPCAKAKGAYLVSVTSVEGNALAAVCD  147 (336)
Q Consensus        97 ~~~~~~dlvi~iS~sG~~~~~~~~~~~ak~~g~~vi~IT~~~~s~l~~~ad  147 (336)
                      .+.++.|++|+.|          ++++|.++||++|+||+  ++++.+.|.
T Consensus        58 ~wvg~~dlvia~S----------a~~~A~rrGa~vv~vts--gG~L~~~a~   96 (290)
T 1wiw_A           58 DWGEEGTLFLLEG----------GYDLGEAAGMALLAETG--RARVVRVGF   96 (290)
T ss_dssp             SCCSSSEEEEEEC----------SSCTTSCSTTC--CCCT--TCEEEEEES
T ss_pred             CccCCCCEEEEec----------HHHHHHHcCCeEEEECC--CChHHHHHh
Confidence            4578999999999          78899999999999997  558888764

>3bbn_B Ribosomal protein S2; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1

Probab=93.41  E-value=0.27  Score=40.95  Aligned_cols=69  Identities=10%  Similarity=0.169  Sum_probs=46.5

Q ss_pred             CCcEEEEEeCCCCcHHHHHHHHHHHHcCCeEEEEeCCCCCccccccCEEEEcCCCcccCCCCCCChhHHHHHHHHHHHHH
Q 019775          101 SDDILVMFSKSGNTEELLKVVPCAKAKGAYLVSVTSVEGNALAAVCDMNVHLPVERELCPFDLAPVTSTAIQMVFGDTVA  180 (336)
Q Consensus       101 ~~dlvi~iS~sG~~~~~~~~~~~ak~~g~~vi~IT~~~~s~l~~~ad~~i~~~~~~~~~~~~~~~~~s~~~~~~l~d~l~  180 (336)
                      ..|++|++....+    ..++++|+..|++||++.+. +++. .+.|+.|..  ...          |.-+.-+++..+.
T Consensus       157 ~Pdll~v~Dp~~e----~~ai~EA~~l~IPvIaivDT-n~dp-~~Vdy~IP~--Ndd----------s~~si~li~~~la  218 (231)
T 3bbn_B          157 LPDIVIIVDQQEE----YTALRECITLGIPTICLIDT-NCNP-DLADISIPA--NDD----------AIASIRLILTKLV  218 (231)
T ss_dssp             CCSEEEESCTTTT----HHHHHHHHTTTCCEEECCCS-SSCC-SSCSEECCC--CSS----------SHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCccc----cHHHHHHHHhCCCEEEEecC-CCCc-cceeEEeeC--CCc----------cHHHHHHHHHHHH
Confidence            5788888764433    36778899999999999987 4443 467777554  433          3344556677777


Q ss_pred             HHHHhhc
Q 019775          181 IAMMGAR  187 (336)
Q Consensus       181 ~~~~~~~  187 (336)
                      ..+.+-+
T Consensus       219 ~ai~~g~  225 (231)
T 3bbn_B          219 FAICEGR  225 (231)
T ss_dssp             HHHHHTS
T ss_pred             HHHHHHH
Confidence            7666543

>2nap_A Protein (periplasmic nitrate reductase); nitrogenous acceptor, dissimilatory nitrate reductase; HET: MGD MES; 1.90A {Desulfovibrio desulfuricans} SCOP: b.52.2.2 c.81.1.1 PDB: 2jim_A* 2jir_A* 2jip_A* 2v45_A* 2v3v_A* 2jiq_A* 2jio_A*

Probab=91.94  E-value=2.1  Score=42.02  Aligned_cols=115  Identities=11%  Similarity=0.169  Sum_probs=67.3

Q ss_pred             hHHHHHHHHHHc------CCCeEEEEeccchHHHHHHHHHHHHh--cCCeeeecCCc----------------ccccccc
Q 019775           41 PHTLTFTQTLLK------CRGTIFFTGVGKSGFVANKISQTLIS--LGIKSGFLNPL----------------DALHGDI   96 (336)
Q Consensus        41 ~~i~~~~~~i~~------a~~~I~i~G~G~s~~~a~~~~~~l~~--~g~~~~~~~~~----------------~~~~~~~   96 (336)
                      +.++.+++.+.+      . +.|.++|.|....-..++..+|.+  +|-+.+.....                .......
T Consensus        83 eAl~~ia~~l~~~~~~~G~-~~i~~~~~~~~~~e~~~~~~~~~~~~~gs~n~~~~~~~c~~~~~~~~~~~~G~~~~~~~~  161 (723)
T 2nap_A           83 EALDLMASRFRSSIDMYGP-NSVAWYGSGQCLTEESYVANKIFKGGFGTNNVDGNPRLCMASAVGGYVTSFGKDEPMGTY  161 (723)
T ss_dssp             HHHHHHHHHHHHHHHHHCG-GGEEEEECTTSCHHHHHHHHHHHHHTSCCCCEEEGGGGTTHHHHHHHHHHHSSCSCSSCG
T ss_pred             HHHHHHHHHHHHHHHhhCC-CeEEEEeCCcccchhhHHHHHHHHHhcCCCceeCCCccccchHhHHHHhccCCCCCCCCh
Confidence            345555555433      3 468888877554444455555554  55433221110                0001122


Q ss_pred             CCCCCCcEEEEEeCCCC--cHHHHHHHHHHHHc--CCeEEEEeCCCCCccccccCEEEEcCCCcc
Q 019775           97 GILSSDDILVMFSKSGN--TEELLKVVPCAKAK--GAYLVSVTSVEGNALAAVCDMNVHLPVERE  157 (336)
Q Consensus        97 ~~~~~~dlvi~iS~sG~--~~~~~~~~~~ak~~--g~~vi~IT~~~~s~l~~~ad~~i~~~~~~~  157 (336)
                      ..+..-|++|++.....  .+....-+..++++  |+++|+|-.. .+..+..||..+.+..+++
T Consensus       162 ~d~~~ad~il~~G~n~~~~~p~~~~~~~~a~~~~~g~klividP~-~t~ta~~Ad~~l~irPGtD  225 (723)
T 2nap_A          162 ADIDQATCFFIIGSNTSEAHPVLFRRIARRKQVEPGVKIIVADPR-RTNTSRIADMHVAFRPGTD  225 (723)
T ss_dssp             GGGGTCSEEEEESCCHHHHSHHHHHHHHHHHHHCTTCEEEEECSB-CCGGGGGCSEEECCCTTTH
T ss_pred             hhHhHCCEEEEEcCChhHhCcHHHHHHHHHHhhCCCCEEEEEcCc-CCchhhhhCeeeecCCCcH
Confidence            34567788888865422  23344556777887  9999999865 6677889999998876655

>2iv2_X Formate dehydrogenase H; oxidoreductase, 4Fe-4S, anaerobic, complete proteome, direct protein sequencing, Fe4S4, iron, iron sulfur cluster; HET: 2MD MGD; 2.27A {Escherichia coli} SCOP: b.52.2.2 c.81.1.1 PDB: 1fdi_A* 1fdo_A* 1aa6_A*

Probab=91.63  E-value=2.3  Score=41.67  Aligned_cols=59  Identities=19%  Similarity=0.236  Sum_probs=43.4

Q ss_pred             CCCCCcEEEEEeCCCC--cHHHHHHHHHHHHcCCeEEEEeCCCCCccccccCEEEEcCCCcc
Q 019775           98 ILSSDDILVMFSKSGN--TEELLKVVPCAKAKGAYLVSVTSVEGNALAAVCDMNVHLPVERE  157 (336)
Q Consensus        98 ~~~~~dlvi~iS~sG~--~~~~~~~~~~ak~~g~~vi~IT~~~~s~l~~~ad~~i~~~~~~~  157 (336)
                      .+..-|++|++.....  .+....-+..++++|+++|+|-.. .+..+..||..+.+..+++
T Consensus       163 di~~ad~il~~G~n~~~~~p~~~~~l~~a~~~G~klividPr-~t~ta~~Ad~~l~irPGtD  223 (715)
T 2iv2_X          163 EIDNTDLVFVFGYNPADSHPIVANHVINAKRNGAKIIVCDPR-KIETARIADMHIALKNGSN  223 (715)
T ss_dssp             GGGGCSEEEEESCCHHHHCHHHHHHHHHHHHTTCEEEEECSS-CCHHHHTCSEEECCCTTCH
T ss_pred             HHhcCCEEEEEcCChHHhCHHHHHHHHHHHHCCCeEEEEcCC-CCchhHhhCEEeccCCCcH
Confidence            3556788888865322  234556677889999999999764 6677889999999877655

>3ml1_A NAPA, periplasmic nitrate reductase; heterodimer, oxidoreductase; HET: MGD HEC; 1.60A {Ralstonia eutropha} PDB: 3o5a_A* 1ogy_A* 2nya_A*

Probab=89.64  E-value=6.6  Score=39.10  Aligned_cols=126  Identities=10%  Similarity=0.126  Sum_probs=72.0

Q ss_pred             CeEEEEeccchHHHHHHHHHHHHh--cCCeeeecCCc----------------cccccccCCCCCCcEEEEEeCCC-Cc-
Q 019775           55 GTIFFTGVGKSGFVANKISQTLIS--LGIKSGFLNPL----------------DALHGDIGILSSDDILVMFSKSG-NT-  114 (336)
Q Consensus        55 ~~I~i~G~G~s~~~a~~~~~~l~~--~g~~~~~~~~~----------------~~~~~~~~~~~~~dlvi~iS~sG-~~-  114 (336)
                      +.|.++|.|....-..++..+|.+  +|-+.+-....                .........+..-|++|++.... .+ 
T Consensus       114 ~si~~~~sg~~~~e~~~~~~kl~~~~~gt~n~d~~~~~c~~~~~~~~~~~~G~~~~~~~~~d~~~ad~il~~G~N~~~~~  193 (802)
T 3ml1_A          114 TAVGMFGSGQWTVWEGYAAAKLYKAGFRSNNIDPNARHCMASAAAGFMRTFGMDEPMGCYDDFEAADAFVLWGSNMAEMH  193 (802)
T ss_dssp             GGEEEEECTTSCHHHHHHHHHHHHTTTCCCCEEEGGGGTTHHHHHHHHHHHSSCSCSSCGGGGGTCSEEEEESCCHHHHS
T ss_pred             CeEEEEeCCCCchHHHHHHHHHHHhhcCCccccCCcccchhhHHHhhHhhcCCCCCCCCHHHHhhCCEEEEECCChHHhC
Confidence            478888888765555566666665  34322211100                00011123455678888885432 22 


Q ss_pred             HHHHHHHHHHH--HcCCeEEEEeCCCCCccccccCEEEEcCCCcccCCCCCCChhHHHHHHHHHHHHHHHHHhhcCCChH
Q 019775          115 EELLKVVPCAK--AKGAYLVSVTSVEGNALAAVCDMNVHLPVERELCPFDLAPVTSTAIQMVFGDTVAIAMMGARNLTRD  192 (336)
Q Consensus       115 ~~~~~~~~~ak--~~g~~vi~IT~~~~s~l~~~ad~~i~~~~~~~~~~~~~~~~~s~~~~~~l~d~l~~~~~~~~~~~~~  192 (336)
                      +....-+..++  ++|+++|+|-.. .+..+..||..|.+..+.+               ..++..|+..++++...+ +
T Consensus       194 p~~~~~i~~a~~~~~G~klivIDPr-~t~ta~~AD~~l~irPGtD---------------~aL~~~m~~~ii~e~l~D-~  256 (802)
T 3ml1_A          194 PILWTRVTDRRLSHPKTRVVVLSTF-THRCFDLADIGIIFKPQTD---------------LAMLNYIANYIIRNNKVN-K  256 (802)
T ss_dssp             HHHHHHHHHHHHHSTTCEEEEEESS-BCGGGGTCSEEEECCTTTH---------------HHHHHHHHHHHHHTTCCC-H
T ss_pred             hHHHHHHHHHHHhcCCCEEEEEeCC-CCchhHHhccEeccCCCHH---------------HHHHHHHHHHHHHCCCcC-H
Confidence            22233344444  379999999875 6667889999999877766               455555555566554333 3


Q ss_pred             HHhhc
Q 019775          193 EYAAN  197 (336)
Q Consensus       193 ~~~~~  197 (336)
                      +|.+.
T Consensus       257 ~Fv~~  261 (802)
T 3ml1_A          257 DFVNK  261 (802)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            44433

>2d59_A Hypothetical protein PH1109; COA binding, structural genomics; 1.65A {Pyrococcus horikoshii} SCOP: c.2.1.8 PDB: 2d5a_A* 2e6u_X* 3qa9_A 3q9n_A* 3q9u_A*

Probab=87.77  E-value=2.9  Score=31.80  Aligned_cols=83  Identities=20%  Similarity=0.181  Sum_probs=53.3

Q ss_pred             HHcCCCeEEEEeccch-HHHHHHHHHHHHhcCCeeeecCCcc-ccc-----cccCCC-CCCcEEEEEeCCCCcHHHHHHH
Q 019775           50 LLKCRGTIFFTGVGKS-GFVANKISQTLISLGIKSGFLNPLD-ALH-----GDIGIL-SSDDILVMFSKSGNTEELLKVV  121 (336)
Q Consensus        50 i~~a~~~I~i~G~G~s-~~~a~~~~~~l~~~g~~~~~~~~~~-~~~-----~~~~~~-~~~dlvi~iS~sG~~~~~~~~~  121 (336)
                      +.+. ++|-++|.+.. ..++..+...|.+.|+.++.+++.. .+.     ..+..+ .+-|+++++.-+   ....+++
T Consensus        19 l~~p-~~iaVVGas~~~g~~G~~~~~~l~~~G~~v~~Vnp~~~~i~G~~~y~sl~~l~~~vDlvvi~vp~---~~~~~vv   94 (144)
T 2d59_A           19 LTRY-KKIALVGASPKPERDANIVMKYLLEHGYDVYPVNPKYEEVLGRKCYPSVLDIPDKIEVVDLFVKP---KLTMEYV   94 (144)
T ss_dssp             HHHC-CEEEEETCCSCTTSHHHHHHHHHHHTTCEEEEECTTCSEETTEECBSSGGGCSSCCSEEEECSCH---HHHHHHH
T ss_pred             HcCC-CEEEEEccCCCCCchHHHHHHHHHHCCCEEEEECCCCCeECCeeccCCHHHcCCCCCEEEEEeCH---HHHHHHH
Confidence            3446 59999999643 2445555566778888887777532 111     111222 345887776543   6778888


Q ss_pred             HHHHHcCCeEEEEeC
Q 019775          122 PCAKAKGAYLVSVTS  136 (336)
Q Consensus       122 ~~ak~~g~~vi~IT~  136 (336)
                      +.+-+.|++.+.++.
T Consensus        95 ~~~~~~gi~~i~~~~  109 (144)
T 2d59_A           95 EQAIKKGAKVVWFQY  109 (144)
T ss_dssp             HHHHHHTCSEEEECT
T ss_pred             HHHHHcCCCEEEECC
Confidence            888899999876664

>1h0h_A Formate dehydrogenase (large subunit); tungsten selenium formate dehydrogenase, selenocysteine, molybdopterin, MGD, iron-sulphur cluster; HET: 2MD MGD EPE; 1.8A {Desulfovibrio gigas} SCOP: b.52.2.2 c.81.1.1

Probab=86.08  E-value=6.2  Score=40.24  Aligned_cols=59  Identities=25%  Similarity=0.310  Sum_probs=42.3

Q ss_pred             CCCCCcEEEEEeCCCC--cHHHHHHHHHHHHcCCeEEEEeCCCCCccccccCEEEEcCCCcc
Q 019775           98 ILSSDDILVMFSKSGN--TEELLKVVPCAKAKGAYLVSVTSVEGNALAAVCDMNVHLPVERE  157 (336)
Q Consensus        98 ~~~~~dlvi~iS~sG~--~~~~~~~~~~ak~~g~~vi~IT~~~~s~l~~~ad~~i~~~~~~~  157 (336)
                      .+..-|++|++.....  .+....-+..++++|+++|+|-.. .+..+..||..+.+..+++
T Consensus       181 D~~~ad~il~~G~N~~~~~p~~~~~~~~a~~~G~klivIDPr-~t~ta~~AD~~l~irPGTD  241 (977)
T 1h0h_A          181 DLKNSDVILMMGSNPAENHPISFKWVMRAKDKGATLIHVDPR-YTRTSTKCDLYAPLRSGSD  241 (977)
T ss_dssp             GGGGCSEEEEESCCHHHHSTTHHHHHHHHHHTTCEEEEECSS-CCTTGGGCSEEECCCTTCH
T ss_pred             HHhhCCEEEEECCChHHhCcHHHHHHHHHHHCCCeEEEECCC-CCchhHHhCeeeccCCCch
Confidence            3556788888854321  122345567788999999999875 5667789999998877766

>2qip_A Protein of unknown function VPA0982; APC85975, vibrio parahaemolyticus RIMD 2210633, STR genomics, PSI-2, protein structure initiative; 1.48A {Vibrio parahaemolyticus}

Probab=85.47  E-value=4.5  Score=31.50  Aligned_cols=108  Identities=11%  Similarity=0.078  Sum_probs=64.7

Q ss_pred             HHHHHHHHHcCC--CeEEEEeccchHHHHHHHHHHHHhcCCeeeecCCcc--------cc-----ccccCCCCCCcEEEE
Q 019775           43 TLTFTQTLLKCR--GTIFFTGVGKSGFVANKISQTLISLGIKSGFLNPLD--------AL-----HGDIGILSSDDILVM  107 (336)
Q Consensus        43 i~~~~~~i~~a~--~~I~i~G~G~s~~~a~~~~~~l~~~g~~~~~~~~~~--------~~-----~~~~~~~~~~dlvi~  107 (336)
                      ++++.+.+.+.+  -+.++||.-....--..+...|...|+.+...+-..        ..     ...+.....=|.+++
T Consensus        35 ~~~l~~~~~~~g~l~~~~~Y~~~~~~~~~~~~~~~L~~~g~~v~~~p~~~~~~~~~k~~~Dv~laiD~~~~a~~~d~~vL  114 (165)
T 2qip_A           35 YNQFWYVATQEKEVVSAKAYAIASNDPKQRQFHHILRGVGFEVMLKPYIQRRDGSAKGDWDVGITLDAIEIAPDVDRVIL  114 (165)
T ss_dssp             HHHHHHHHTTTEEEEEEEEEECCCCCHHHHHHHHHHHHHTCEEEECCCCCCSSCCCSCCCHHHHHHHHHHHGGGCSEEEE
T ss_pred             HHHHHHHHhcCCEEEEEEEEEccCCchhHHHHHHHHHHCCcEEEEEeeeeccCCccCCCccHHHHHHHHHhhccCCEEEE
Confidence            445555554331  245566643221333456678888898876433110        00     000111245588899


Q ss_pred             EeCCCCcHHHHHHHHHHHHc-CCeEEEEeCCC--CCccccccCEEEEcC
Q 019775          108 FSKSGNTEELLKVVPCAKAK-GAYLVSVTSVE--GNALAAVCDMNVHLP  153 (336)
Q Consensus       108 iS~sG~~~~~~~~~~~ak~~-g~~vi~IT~~~--~s~l~~~ad~~i~~~  153 (336)
                      +|..|   +...+++.++++ |.+|+++.-..  ...+.+.||..+.+.
T Consensus       115 vSgD~---DF~plv~~lr~~~G~~V~v~g~~~~~s~~L~~~ad~fi~l~  160 (165)
T 2qip_A          115 VSGDG---DFSLLVERIQQRYNKKVTVYGVPRLTSQTLIDCADNFVAID  160 (165)
T ss_dssp             ECCCG---GGHHHHHHHHHHHCCEEEEEECGGGSCHHHHHHSSEEEECS
T ss_pred             EECCh---hHHHHHHHHHHHcCcEEEEEeCCCcChHHHHHhCCEEEecc
Confidence            88766   677788888996 99999998543  346888899887764

>1kyq_A Met8P, siroheme biosynthesis protein Met8; homodimer, oxidoreductase, lyase; HET: NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.2.1.11 e.37.1.1

Probab=85.26  E-value=6.6  Score=33.50  Aligned_cols=100  Identities=12%  Similarity=0.151  Sum_probs=64.5

Q ss_pred             CeEEEEeccchHHHHHHHHHHHHhcCCeeeecCCccc---------cc------------------------ccc-----
Q 019775           55 GTIFFTGVGKSGFVANKISQTLISLGIKSGFLNPLDA---------LH------------------------GDI-----   96 (336)
Q Consensus        55 ~~I~i~G~G~s~~~a~~~~~~l~~~g~~~~~~~~~~~---------~~------------------------~~~-----   96 (336)
                      ++|.++|.|.   +|..-...|...|..+.++.+...         +.                        ...     
T Consensus        14 k~VLVVGgG~---va~rka~~Ll~~Ga~VtViap~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~i~   90 (274)
T 1kyq_A           14 KRILLIGGGE---VGLTRLYKLMPTGCKLTLVSPDLHKSIIPKFGKFIQNKDQPDYREDAKRFINPNWDPTKNEIYEYIR   90 (274)
T ss_dssp             CEEEEEEESH---HHHHHHHHHGGGTCEEEEEEEEECTTHHHHHCGGGC-----------CEEECTTCCTTSCCCSEEEC
T ss_pred             CEEEEECCcH---HHHHHHHHHHhCCCEEEEEcCCCCcchhHHHHHHHhccccccccchhhcccccccccccCCeeEEEc
Confidence            5899999997   566677888888988877653110         00                        000     


Q ss_pred             CCCCCC---------cEEEEEeCCCCcHHHHHHHHHHHHc---CCeEEEEeCCCCCc-----cccccC-EEEEcCCCcc
Q 019775           97 GILSSD---------DILVMFSKSGNTEELLKVVPCAKAK---GAYLVSVTSVEGNA-----LAAVCD-MNVHLPVERE  157 (336)
Q Consensus        97 ~~~~~~---------dlvi~iS~sG~~~~~~~~~~~ak~~---g~~vi~IT~~~~s~-----l~~~ad-~~i~~~~~~~  157 (336)
                      ....++         +..+++...|....-..+++.|+++   |+.+-.+.+...+.     .....+ +.+.++++..
T Consensus        91 ~~~~~~dL~~l~~~~~adlViaat~d~~~n~~I~~~Ar~~f~~~i~VNvvd~pel~~f~~Pa~~~~g~~l~IaIST~Gk  169 (274)
T 1kyq_A           91 SDFKDEYLDLENENDAWYIIMTCIPDHPESARIYHLCKERFGKQQLVNVADKPDLCDFYFGANLEIGDRLQILISTNGL  169 (274)
T ss_dssp             SSCCGGGGCCSSTTCCEEEEEECCSCHHHHHHHHHHHHHHHCTTSEEEETTCGGGBSEECCEEEEETTTEEEEEEESSS
T ss_pred             CCCCHHHHhhcccCCCeEEEEEcCCChHHHHHHHHHHHHhcCCCcEEEECCCcccCeeEeeeEEEeCCCEEEEEECCCC
Confidence            111222         4567788888877778888999998   87776666654444     334456 7777765443

>2e7z_A Acetylene hydratase AHY; tungstoprotein, DMSO reductase family, iron-sulfur-cluster, lyase; HET: MGD; 1.26A {Pelobacter acetylenicus}

Probab=85.23  E-value=5.5  Score=39.12  Aligned_cols=59  Identities=15%  Similarity=0.247  Sum_probs=44.7

Q ss_pred             CCCCCcEEEEEeCC-CCc-H-HHHHHHHHHHHcCCeEEEEeCCCCCccccccCEEEEcCCCcc
Q 019775           98 ILSSDDILVMFSKS-GNT-E-ELLKVVPCAKAKGAYLVSVTSVEGNALAAVCDMNVHLPVERE  157 (336)
Q Consensus        98 ~~~~~dlvi~iS~s-G~~-~-~~~~~~~~ak~~g~~vi~IT~~~~s~l~~~ad~~i~~~~~~~  157 (336)
                      .+..-|++|++... ..+ + .....++.++++|+++|+|-.. .+..+..||..+.+..+++
T Consensus       157 d~~~ad~il~~G~n~~~~~p~~~~~~l~~a~~~G~klividPr-~t~ta~~Ad~~l~irPGtD  218 (727)
T 2e7z_A          157 SFADSNCLLFIGKNLSNHNWVSQFNDLKAALKRGCKLIVLDPR-RTKVAEMADIWLPLRYGTD  218 (727)
T ss_dssp             CTTTCSEEEEESCCCBTTBSHHHHHHHHHHHHHTCEEEEECSS-CCHHHHHCSEEECCCTTCH
T ss_pred             CcccCCEEEEECCChhhcCCHHHHHHHHHHHHCCCeEEEECCC-CCcchhhcceeecCCCCcH
Confidence            46677888888543 222 3 5566788889999999999865 6777888999998877655

>2vpz_A Thiosulfate reductase; oxidoreductase, molybdopterin guanine dinucleotide, iron-sulfur, metal-binding, molybdopterin; HET: MGD; 2.40A {Thermus thermophilus} PDB: 2vpx_A* 2vpw_A* 2vpy_A*

Probab=85.18  E-value=6.6  Score=38.82  Aligned_cols=59  Identities=17%  Similarity=0.138  Sum_probs=43.7

Q ss_pred             CCCCCcEEEEEeCC-CCc-H-HHHHHHHHHHHcCCeEEEEeCCCCCccccccCEEEEcCCCcc
Q 019775           98 ILSSDDILVMFSKS-GNT-E-ELLKVVPCAKAKGAYLVSVTSVEGNALAAVCDMNVHLPVERE  157 (336)
Q Consensus        98 ~~~~~dlvi~iS~s-G~~-~-~~~~~~~~ak~~g~~vi~IT~~~~s~l~~~ad~~i~~~~~~~  157 (336)
                      .+..-|++|++... ..+ + .....++.++++|+++|+|-.. .+..+..||..+.+..+++
T Consensus       196 d~~~ad~il~~G~n~~~~~p~~~~~~~~~a~~~G~klividPr-~t~ta~~Ad~~l~irPGtD  257 (765)
T 2vpz_A          196 DWENARYIVLIGHHIGEDTHNTQLQDFALALKNGAKVVVVDPR-FSTAAAKAHRWLPIKPGTD  257 (765)
T ss_dssp             CGGGCSEEEEESCCBTTBCCHHHHHHHHHHHHTTCEEEEECSB-CCTTGGGCSEEECCCTTCH
T ss_pred             ccccCCEEEEEeCChhhcCChHHHHHHHHHHHCCCEEEEECCC-CCcchhhCCeEeCCCCCcH
Confidence            35566888888543 332 3 5666788899999999999865 5677888999999877655

>2vqe_B 30S ribosomal protein S2; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: c.23.15.1 PDB: 1gix_E* 1hnw_B* 1hnx_B* 1hnz_B* 1hr0_B 1ibk_B* 1ibl_B* 1ibm_B 1j5e_B 1jgo_E* 1jgp_E* 1jgq_E* 1ml5_E* 1n32_B* 1n33_B* 1n34_B 1n36_B 1xmo_B* 1xmq_B* 1xnq_B* ...

Probab=84.54  E-value=2.6  Score=35.54  Aligned_cols=71  Identities=8%  Similarity=0.042  Sum_probs=49.4

Q ss_pred             CCCcEEEEEeCCCCcHHHHHHHHHHHHcCCeEEEEeCCCCCccccccCEEEEcCCCcccCCCCCCChhHHHHHHHHHHHH
Q 019775          100 SSDDILVMFSKSGNTEELLKVVPCAKAKGAYLVSVTSVEGNALAAVCDMNVHLPVERELCPFDLAPVTSTAIQMVFGDTV  179 (336)
Q Consensus       100 ~~~dlvi~iS~sG~~~~~~~~~~~ak~~g~~vi~IT~~~~s~l~~~ad~~i~~~~~~~~~~~~~~~~~s~~~~~~l~d~l  179 (336)
                      ...|++|++....+    ..+++.|+..|++||+|.+. +++. .+.|+.|.+  +..          |.-+.-+++.+|
T Consensus       157 ~~Pdll~V~Dp~~e----~~Ai~EA~~l~IPvIaivDT-n~dp-~~VdypIP~--NDd----------s~~sI~Li~~~l  218 (256)
T 2vqe_B          157 RLPDAIFVVDPTKE----AIAVREARKLFIPVIALADT-DSDP-DLVDYIIPG--NDD----------AIRSIQLILSRA  218 (256)
T ss_dssp             SCCSEEEESCTTTT----HHHHHHHHHTTCCCEECCCT-TSCG-GGCSEECCS--CSS----------CHHHHHHHHHHH
T ss_pred             cCCCEEEEeCCccc----hHHHHHHHHcCCCEEEEecC-CCCc-hhcceEeec--CCc----------hHHHHHHHHHHH
Confidence            46788888876443    35678889999999999986 5554 467877554  433          345556777777


Q ss_pred             HHHHHhhcC
Q 019775          180 AIAMMGARN  188 (336)
Q Consensus       180 ~~~~~~~~~  188 (336)
                      ...+.+-++
T Consensus       219 a~ai~~g~~  227 (256)
T 2vqe_B          219 VDLIIQARG  227 (256)
T ss_dssp             HHHHHTTTS
T ss_pred             HHHHHHHHh
Confidence            777776543

>1kqf_A FDH-N alpha, formate dehydrogenase, nitrate-inducible, major S; oxidoreductase, selenium, selenocysteine, seCys, molybdenum; HET: MGD HEM CDL; 1.60A {Escherichia coli} SCOP: b.52.2.2 c.81.1.1 PDB: 1kqg_A*

Probab=82.23  E-value=8.1  Score=39.57  Aligned_cols=58  Identities=14%  Similarity=0.170  Sum_probs=40.1

Q ss_pred             CCCCcEEEEEeCCCC-c-HHHHHHHHHHH-HcCCeEEEEeCCCCCccccccCEEEEcCCCcc
Q 019775           99 LSSDDILVMFSKSGN-T-EELLKVVPCAK-AKGAYLVSVTSVEGNALAAVCDMNVHLPVERE  157 (336)
Q Consensus        99 ~~~~dlvi~iS~sG~-~-~~~~~~~~~ak-~~g~~vi~IT~~~~s~l~~~ad~~i~~~~~~~  157 (336)
                      +..-|++|++..... + +....-+..++ ++|+++|+|-.. .+..+..||..+.+..+++
T Consensus       220 ~~~ad~il~~G~N~~~~~p~~~~~i~~a~~~~GaklivIDPr-~t~ta~~AD~~l~irPGTD  280 (1015)
T 1kqf_A          220 IKNANVVMVMGGNAAEAHPVGFRWAMEAKNNNDATLIVVDPR-FTRTASVADIYAPIRSGTD  280 (1015)
T ss_dssp             GGGCSEEEEESCCHHHHSTTTTHHHHHHHHHSCCEEEEECSS-CCHHHHTCSEEECCCTTCH
T ss_pred             HhhCCEEEEECCChhhhCchHHHHHHHHHHHCCCeEEEEeCC-CCchhHhhCeeeccCCCch
Confidence            556788888854321 1 11233456677 899999999864 6677889999998876655

>3ff4_A Uncharacterized protein; structural genomics, PSI- protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Cytophaga hutchinsonii atcc 33406}

Probab=80.01  E-value=4  Score=30.16  Aligned_cols=79  Identities=10%  Similarity=0.036  Sum_probs=53.5

Q ss_pred             CeEEEEeccch-HHHHHHHHHHHHhcCCeeeecCCc-cccc-----cccCCCCCCcEEEEEeCCCCcHHHHHHHHHHHHc
Q 019775           55 GTIFFTGVGKS-GFVANKISQTLISLGIKSGFLNPL-DALH-----GDIGILSSDDILVMFSKSGNTEELLKVVPCAKAK  127 (336)
Q Consensus        55 ~~I~i~G~G~s-~~~a~~~~~~l~~~g~~~~~~~~~-~~~~-----~~~~~~~~~dlvi~iS~sG~~~~~~~~~~~ak~~  127 (336)
                      ++|-++|.... ...+......|...|++++.+++. ..+.     ..+..+.+-|+++++--   .+.+.++++.|.++
T Consensus         5 ~siAVVGaS~~~~~~g~~v~~~L~~~g~~V~pVnP~~~~i~G~~~y~sl~dlp~vDlavi~~p---~~~v~~~v~e~~~~   81 (122)
T 3ff4_A            5 KKTLILGATPETNRYAYLAAERLKSHGHEFIPVGRKKGEVLGKTIINERPVIEGVDTVTLYIN---PQNQLSEYNYILSL   81 (122)
T ss_dssp             CCEEEETCCSCTTSHHHHHHHHHHHHTCCEEEESSSCSEETTEECBCSCCCCTTCCEEEECSC---HHHHGGGHHHHHHH
T ss_pred             CEEEEEccCCCCCCHHHHHHHHHHHCCCeEEEECCCCCcCCCeeccCChHHCCCCCEEEEEeC---HHHHHHHHHHHHhc
Confidence            58999998653 356777777788889999988853 2221     11222323678777654   46677778888899


Q ss_pred             CCeEEEEeC
Q 019775          128 GAYLVSVTS  136 (336)
Q Consensus       128 g~~vi~IT~  136 (336)
                      |++.+.++.
T Consensus        82 g~k~v~~~~   90 (122)
T 3ff4_A           82 KPKRVIFNP   90 (122)
T ss_dssp             CCSEEEECT
T ss_pred             CCCEEEECC
Confidence            999876654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	336
d1jeoa_	177	c.80.1.3 (A:) Probable 3-hexulose-6-phosphate isom	5e-20
d1m3sa_	186	c.80.1.3 (A:) Hypothetical protein YckF {Bacillus	6e-20
d1pvma4	142	d.37.1.1 (A:1-142) Hypothetical protein Ta0289 {Ar	2e-10
d2rc3a1	127	d.37.1.1 (A:23-149) Uncharacterized protein NE2398	2e-10
d2nyca1	140	d.37.1.1 (A:181-320) Nuclear protein SNF4 {Baker's	6e-10
d1vima_	192	c.80.1.3 (A:) Hypothetical protein AF1796 {Archaeo	1e-09
d2o16a3	139	d.37.1.1 (A:20-158) Hypothetical protein VC0737 {V	2e-09
d1vr9a3	121	d.37.1.1 (A:1-121) Hypothetical protein TM0892, CB	5e-09
d2v8qe1	145	d.37.1.1 (E:182-326) 5'-AMP-activated protein kina	6e-09
d1o50a3	145	d.37.1.1 (A:1-145) Hypothetical protein TM0935 {Th	8e-09
d1y5ha3	123	d.37.1.1 (A:2-124) Hypothetical protein Rv2626c {M	2e-08
d2yzia1	132	d.37.1.1 (A:4-135) Uncharacterized protein PH0107	3e-08
d2v8qe2	159	d.37.1.1 (E:23-181) 5'-AMP-activated protein kinas	5e-08
d1yava3	132	d.37.1.1 (A:13-144) Hypothetical protein YkuL {Bac	5e-08
d1x9ia_	300	c.80.1.1 (A:) Glucose-6-phosphate isomerase, conje	6e-08
d1j5xa_	329	c.80.1.1 (A:) Hypothetical protein TM0813 {Thermot	9e-08
d2yzqa1	156	d.37.1.1 (A:123-278) Uncharacterized protein PH178	3e-07
d1pbja3	120	d.37.1.1 (A:2-121) Hypothetical protein MTH1622 {A	3e-07
d2ef7a1	127	d.37.1.1 (A:1-127) Uncharacterized protein ST2348	7e-07
d3ddja2	135	d.37.1.1 (A:1-135) Uncharacterized protein SSO3205	2e-06
d2ooxe2	153	d.37.1.1 (E:182-334) Uncharacterized protein C1556	5e-06
d2riha1	131	d.37.1.1 (A:2-132) Uncharacterized protein PAE2072	8e-06
d3ddja1	141	d.37.1.1 (A:136-276) Uncharacterized protein SSO32	8e-06
d1jr1a4	120	d.37.1.1 (A:113-232) Type II inosine monophosphate	9e-06
d1jr1a4	120	d.37.1.1 (A:113-232) Type II inosine monophosphate	9e-04
d2yzqa2	122	d.37.1.1 (A:1-122) Uncharacterized protein PH1780	5e-05
d2j9la1	169	d.37.1.1 (A:578-746) Chloride channel protein 5, C	6e-05
d2d4za3	160	d.37.1.1 (A:527-606,A:691-770) Chloride channel pr	1e-04
d2ooxe1	179	d.37.1.1 (E:3-181) Uncharacterized protein C1556.0	5e-04
d2ouxa2	127	d.37.1.1 (A:136-262) Magnesium transporter MgtE {E	7e-04

>d1jeoa_ c.80.1.3 (A:) Probable 3-hexulose-6-phosphate isomerase MJ1247 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 177

class: Alpha and beta proteins (a/b)
fold: SIS domain
superfamily: SIS domain
family: mono-SIS domain
domain: Probable 3-hexulose-6-phosphate isomerase MJ1247
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

 Score = 83.7 bits (206), Expect = 5e-20
 Identities = 45/179 (25%), Positives = 77/179 (43%), Gaps = 10/179 (5%)

Query: 21  LDLFKSQQDHLNYFFQHLSLPHTL-TFTQTLLKCRGTIFFTGVGKSGFVANKISQTLISL 79
           LD+  +    L  F+ +    + L +    ++K +  IF  GVG+SG++    +  L+ L
Sbjct: 4   LDIVSNNILILKKFYTNDEWKNKLDSLIDRIIKAK-KIFIFGVGRSGYIGRCFAMRLMHL 62

Query: 80  GIKSGFLNPLDALHGDIGILSSDDILVMFSKSGNTEELLKVVPCAKAKGAYLVSVTSVEG 139
           G KS F+               DD+L++ S SG TE +L V   AK     ++++    G
Sbjct: 63  GFKSYFVG-----ETTTPSYEKDDLLILISGSGRTESVLTVAKKAKNINNNIIAIVCECG 117

Query: 140 NALAAVCDMNVHLPVERELCPFDLAPVTSTAIQMVFGDTVAIAMMGARNLTRDEYAANH 198
           N +    D+ + L V++    +     T     ++F D V   +M   NL   E    H
Sbjct: 118 N-VVEFADLTIPLEVKK--SKYLPMGTTFEETALIFLDLVIAEIMKRLNLDESEIIKRH 173

>d1m3sa_ c.80.1.3 (A:) Hypothetical protein YckF {Bacillus subtilis [TaxId: 1423]} Length = 186

class: Alpha and beta proteins (a/b)
fold: SIS domain
superfamily: SIS domain
family: mono-SIS domain
domain: Hypothetical protein YckF
species: Bacillus subtilis [TaxId: 1423]

 Score = 83.7 bits (206), Expect = 6e-20
 Identities = 33/183 (18%), Positives = 74/183 (40%), Gaps = 12/183 (6%)

Query: 22  DLFKSQQDHLNYFFQHLSLPHTLTFTQTLLKCRGTIFFTGVGKSGFVANKISQTLISLGI 81
           +      + L+    ++S          +L     IF  G G+SG +A   +  L+ +G 
Sbjct: 6   EYVAEILNELHNSAAYISNEEADQLADHILSSH-QIFTAGAGRSGLMAKSFAMRLMHMGF 64

Query: 82  KSGFLNPLDALHGDIGILSSDDILVMFSKSGNTEELLKVVPCAKAKGAYLVSVTSVEGNA 141
            +  +  +         L+  D++++ S SG T+ L+     AK+    + ++T    ++
Sbjct: 65  NAHIVGEILT-----PPLAEGDLVIIGSGSGETKSLIHTAAKAKSLHGIVAALTINPESS 119

Query: 142 LAAVCDMNVHLPVERELCPFD----LAPVTSTAIQ--MVFGDTVAIAMMGARNLTRDEYA 195
           +    D+ + +P   +         + P+ S   Q  ++F D V + +M  + L  +   
Sbjct: 120 IGKQADLIIRMPGSPKDQSNGSYKTIQPMGSLFEQTLLLFYDAVILKLMEKKGLDSETMF 179

Query: 196 ANH 198
            +H
Sbjct: 180 THH 182

>d1pvma4 d.37.1.1 (A:1-142) Hypothetical protein Ta0289 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 142

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein Ta0289
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 56.1 bits (134), Expect = 2e-10
 Identities = 15/128 (11%), Positives = 46/128 (35%), Gaps = 4/128 (3%)

Query: 207 LIFKVQDVMKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRRT 266
           +  +V+ +M              + D +  +       L+V D+  + +G  ++  + + 
Sbjct: 1   MFMRVEKIM--NSNFKTVNWNTTVFDAVKIMNENHLYGLVVKDDNGNDVGLLSERSIIKR 58

Query: 267 LKASGEGIFKLTVGEMCNRSPRTIGPDAMAVEAMQKMESPPSPVQFLPVINRQNILIGIV 326
                +   ++ +  +  +    +  D    +    +    + ++   V++    ++GIV
Sbjct: 59  FIPRNKKPDEVPIRLVMRKPIPKVKSDYDVKDVAAYLSE--NGLERCAVVDDPGRVVGIV 116

Query: 327 TLHGLVSA 334
           TL  L   
Sbjct: 117 TLTDLSRY 124

>d2rc3a1 d.37.1.1 (A:23-149) Uncharacterized protein NE2398 {Nitrosomonas europaea [TaxId: 915]} Length = 127

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein NE2398
species: Nitrosomonas europaea [TaxId: 915]

 Score = 55.5 bits (133), Expect = 2e-10
 Identities = 23/127 (18%), Positives = 55/127 (43%), Gaps = 5/127 (3%)

Query: 211 VQDVMKPQ-KELPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRRTLKA 269
           V+ +++ +   +      D + + + ++ +   G LLV+ +E   +G  T+ D  R    
Sbjct: 4   VKHLLQEKGHTVVAIGPDDSVFNAMQKMAADNIGALLVMKDEKL-VGILTERDFSRKSYL 62

Query: 270 SGEGIFKLTVGEMCNRSPRTIGPDAMAVEAMQKMESPPSPVQFLPVINRQNILIGIVTLH 329
             + +    V E+  R    +  +    + M  +      V+ LPV++    +IG++++ 
Sbjct: 63  LDKPVKDTQVKEIMTRQVAYVDLNNTNEDCMALITE--MRVRHLPVLD-DGKVIGLLSIG 119

Query: 330 GLVSAGL 336
            LV   +
Sbjct: 120 DLVKDAI 126

>d2nyca1 d.37.1.1 (A:181-320) Nuclear protein SNF4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 140

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Nuclear protein SNF4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 54.8 bits (131), Expect = 6e-10
 Identities = 25/126 (19%), Positives = 48/126 (38%), Gaps = 8/126 (6%)

Query: 215 MKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRRTLKASGEGI 274
           +  Q  +  C+    ++D +  LT      + +IDE  +LI  +   D+   +K      
Sbjct: 13  IITQDNMKSCQMTTPVIDVIQMLTQGRVSSVPIIDENGYLINVYEAYDVLGLIKGGIYND 72

Query: 275 FKLTVGEMCNRSPR------TIGPDAMAVEAMQKMESPPSPVQFLPVINRQNILIGIVTL 328
             L+VGE   R         T   +      M  +    + V    V++    L+G++TL
Sbjct: 73  LSLSVGEALMRRSDDFEGVYTCTKNDKLSTIMDNIRK--ARVHRFFVVDDVGRLVGVLTL 130

Query: 329 HGLVSA 334
             ++  
Sbjct: 131 SDILKY 136

>d1vima_ c.80.1.3 (A:) Hypothetical protein AF1796 {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 192

class: Alpha and beta proteins (a/b)
fold: SIS domain
superfamily: SIS domain
family: mono-SIS domain
domain: Hypothetical protein AF1796
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

 Score = 54.7 bits (130), Expect = 1e-09
 Identities = 44/186 (23%), Positives = 81/186 (43%), Gaps = 12/186 (6%)

Query: 19  TLLDLFKSQQDHLNYFFQHLSLPHTLTFTQTLLKCRGTIFFTGVGKSGFVANKISQTLIS 78
           +LL   +   +H+     H+ L       + +   R +IF  G G+SG++A   +  L+ 
Sbjct: 6   SLLRFLEVVSEHIKNLRNHIDLETVGEMIKLIDSAR-SIFVIGAGRSGYIAKAFAMRLMH 64

Query: 79  LGIKSGFLNPLDALHGDIGILSSDDILVMFSKSGNTEELLKVVPCAKAKGAYLVSVTSVE 138
           LG     +            ++  D+LV  S SG T  ++ +   AK  G+ LV+VT   
Sbjct: 65  LGYTVYVVG-----ETVTPRITDQDVLVGISGSGETTSVVNISKKAKDIGSKLVAVTGKR 119

Query: 139 GNALAAVCDMNVHLPVEREL----CPFDLAPV--TSTAIQMVFGDTVAIAMMGARNLTRD 192
            ++LA + D+ + +  + +         LAP+        M+F D +   +M  ++LT  
Sbjct: 120 DSSLAKMADVVMVVKGKMKQERDEILSQLAPLGTMFELTAMIFLDALVAEIMMQKHLTEK 179

Query: 193 EYAANH 198
           +  A H
Sbjct: 180 DLEARH 185

>d2o16a3 d.37.1.1 (A:20-158) Hypothetical protein VC0737 {Vibrio cholerae [TaxId: 666]} Length = 139

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein VC0737
species: Vibrio cholerae [TaxId: 666]

 Score = 53.0 bits (126), Expect = 2e-09
 Identities = 25/136 (18%), Positives = 55/136 (40%), Gaps = 12/136 (8%)

Query: 208 IFKVQDVMKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRRTL 267
           + KV+D+M              + D    + +     + ++D    L+G  +  DL    
Sbjct: 1   MIKVEDMMTR--HPHTLLRTHTLNDAKHLMEALDIRHVPIVDANKKLLGIVSQRDLLAAQ 58

Query: 268 KAS-------GEGIFKLTVGEMCNRSPRTIGPDAMAVEAMQKMESPPSPVQFLPVINRQN 320
           ++S           F+  + E+ +    ++ P A   E+   M+     +  LPV+  ++
Sbjct: 59  ESSLQRSAQGDSLAFETPLFEVMHTDVTSVAPQAGLKESAIYMQK--HKIGCLPVVA-KD 115

Query: 321 ILIGIVTLHGLVSAGL 336
           +L+GI+T    V+  +
Sbjct: 116 VLVGIITDSDFVTIAI 131

>d1vr9a3 d.37.1.1 (A:1-121) Hypothetical protein TM0892, CBS tandem {Thermotoga maritima [TaxId: 2336]} Length = 121

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein TM0892, CBS tandem
species: Thermotoga maritima [TaxId: 2336]

 Score = 51.5 bits (122), Expect = 5e-09
 Identities = 23/125 (18%), Positives = 44/125 (35%), Gaps = 11/125 (8%)

Query: 210 KVQDVMKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRRTLKA 269
           KV+  +   ++ P+ +E   + + L  +        +V D E H  G     DL      
Sbjct: 2   KVKKWV--TQDFPMVEESATVRECLHRMRQYQTNECIVKDREGHFRGVVNKEDLLDL--- 56

Query: 270 SGEGIFKLTVGEMCNRSPRTIGPDAMAVEAMQKMESPPSPVQFLPVINRQNILIGIVTLH 329
                   +V    +     +  +     A+           +LPV++ +  L G V+LH
Sbjct: 57  ----DLDSSVFNKVSLPDFFVHEEDNITHALLLFLE--HQEPYLPVVDEEMRLKGAVSLH 110

Query: 330 GLVSA 334
             + A
Sbjct: 111 DFLEA 115

>d2v8qe1 d.37.1.1 (E:182-326) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 145

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 51.8 bits (123), Expect = 6e-09
 Identities = 15/132 (11%), Positives = 45/132 (34%), Gaps = 9/132 (6%)

Query: 210 KVQDVMKP-QKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRRTLK 268
            ++++       + + +    +   L          L V+DE+  ++  ++  D+     
Sbjct: 10  SLEELQIGTYANIAMVRTTTPVYVALGIFVQHRVSALPVVDEKGRVVDIYSKFDVINLAA 69

Query: 269 ASGEGIFKLTVGEMC------NRSPRTIGPDAMAVEAMQKMESPPSPVQFLPVINRQNIL 322
                   ++V +                        + ++    + V  L V++  +++
Sbjct: 70  EKTYNNLDVSVTKALQHRSHYFEGVLKCYLHETLEAIINRLVE--AEVHRLVVVDEHDVV 127

Query: 323 IGIVTLHGLVSA 334
            GIV+L  ++ A
Sbjct: 128 KGIVSLSDILQA 139

>d1o50a3 d.37.1.1 (A:1-145) Hypothetical protein TM0935 {Thermotoga maritima [TaxId: 2336]} Length = 145

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein TM0935
species: Thermotoga maritima [TaxId: 2336]

 Score = 51.5 bits (122), Expect = 8e-09
 Identities = 22/140 (15%), Positives = 51/140 (36%), Gaps = 18/140 (12%)

Query: 210 KVQDVMKPQKELPVC-KEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGD------ 262
           KV+DV K     P   +E   I + +  +        + +  +  L+G            
Sbjct: 2   KVKDVCKLISLKPTVVEEDTPIEEIVDRILEDPVTRTVYVARDNKLVGMIPVMHLLKVSG 61

Query: 263 --------LRRTLKASGEGIFKLTVGEMCNRSPRTIGPDAMAVEAMQKMESPPSPVQFLP 314
                       +++S + +      E+    P  +  D    EA++ M    + +Q +P
Sbjct: 62  FHFFGFIPKEELIRSSMKRLIAKNASEIM-LDPVYVHMDTPLEEALKLMID--NNIQEMP 118

Query: 315 VINRQNILIGIVTLHGLVSA 334
           V++ +  ++G +    ++ A
Sbjct: 119 VVDEKGEIVGDLNSLEILLA 138

>d1y5ha3 d.37.1.1 (A:2-124) Hypothetical protein Rv2626c {Mycobacterium tuberculosis [TaxId: 1773]} Length = 123

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein Rv2626c
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 49.5 bits (117), Expect = 2e-08
 Identities = 29/124 (23%), Positives = 51/124 (41%), Gaps = 5/124 (4%)

Query: 211 VQDVMKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRRTLKAS 270
            +D+M     +    E + +      +     G L +  ++  L G  TD D+     A+
Sbjct: 3   ARDIMNA--GVTCVGEHETLTAAAQYMREHDIGALPICGDDDRLHGMLTDRDIVIKGLAA 60

Query: 271 GEGIFKLTVGEMCNRSPRTIGPDAMAVEAMQKMESPPSPVQFLPVINRQNILIGIVTLHG 330
           G      T GE+   S   +  +A   E +  ME     V+ +PVI+ ++ L+GIVT   
Sbjct: 61  GLDPNTATAGELARDSIYYVDANASIQEMLNVMEE--HQVRRVPVIS-EHRLVGIVTEAD 117

Query: 331 LVSA 334
           +   
Sbjct: 118 IARH 121

>d2yzia1 d.37.1.1 (A:4-135) Uncharacterized protein PH0107 {Pyrococcus horikoshii [TaxId: 53953]} Length = 132

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH0107
species: Pyrococcus horikoshii [TaxId: 53953]

 Score = 49.4 bits (117), Expect = 3e-08
 Identities = 26/125 (20%), Positives = 54/125 (43%), Gaps = 6/125 (4%)

Query: 210 KVQDVMKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRRTLKA 269
            ++  M   K+L   K    + +    +     G L+VI+++ +++G FT  D+ R +  
Sbjct: 6   PIKVYM--TKKLLGVKPSTSVQEASRLMMEFDVGSLVVINDDGNVVGFFTKSDIIRRVIV 63

Query: 270 SGEGIFKLTVGEMCNRSPRTIGPDAMAVEAMQKMESPPSPVQFLPVINRQNILIGIVTLH 329
            G       V  +  R+  T   +    E ++KM      ++ + +   +  ++GI TL 
Sbjct: 64  PGLPYDI-PVERIMTRNLITANVNTPLGEVLRKMAE--HRIKHILIEE-EGKIVGIFTLS 119

Query: 330 GLVSA 334
            L+ A
Sbjct: 120 DLLEA 124

>d2v8qe2 d.37.1.1 (E:23-181) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 159

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 49.4 bits (117), Expect = 5e-08
 Identities = 19/141 (13%), Positives = 46/141 (32%), Gaps = 18/141 (12%)

Query: 210 KVQDVMKPQKELPVCKEGDLIMDQLVELTSKGCGCLL-VIDEEYHLIGTFTDGDLRRTLK 268
           +  D++    +L V      +      L + G         ++   +G  T  D    L 
Sbjct: 14  RCYDLIPTSSKLVVFDTSLQVKKAFFALVTNGVRAAPLWDSKKQSFVGMLTITDFINILH 73

Query: 269 ASGE--------------GIFKLTVGEMCNRSPRTIGPDAMAVEAMQKMESPPSPVQFLP 314
              +                ++    +   +    I P+A   +A+  +    + +  LP
Sbjct: 74  RYYKSALVQIYELEEHKIETWREVYLQDSFKPLVCISPNASLFDAVSSLIR--NKIHRLP 131

Query: 315 VINRQN-ILIGIVTLHGLVSA 334
           VI+ ++   + I+T   ++  
Sbjct: 132 VIDPESGNTLYILTHKRILKF 152

>d1yava3 d.37.1.1 (A:13-144) Hypothetical protein YkuL {Bacillus subtilis [TaxId: 1423]} Length = 132

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein YkuL
species: Bacillus subtilis [TaxId: 1423]

 Score = 48.9 bits (115), Expect = 5e-08
 Identities = 22/125 (17%), Positives = 41/125 (32%)

Query: 210 KVQDVMKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRRTLKA 269
            V   M    ++   + G+ +   L+ LT  G   + V+D  Y L G      +  ++  
Sbjct: 3   TVGQFMIEADKVAHVQVGNNLEHALLVLTKTGYTAIPVLDPSYRLHGLIGTNMIMNSIFG 62

Query: 270 SGEGIFKLTVGEMCNRSPRTIGPDAMAVEAMQKMESPPSPVQFLPVINRQNILIGIVTLH 329
                F+            T  P     + + K         F+ V N + +  GI T  
Sbjct: 63  LERIEFEKLDQITVEEVMLTDIPRLHINDPIMKGFGMVINNGFVCVENDEQVFEGIFTRR 122

Query: 330 GLVSA 334
            ++  
Sbjct: 123 VVLKE 127

>d1x9ia_ c.80.1.1 (A:) Glucose-6-phosphate isomerase, conjectural {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} Length = 300

class: Alpha and beta proteins (a/b)
fold: SIS domain
superfamily: SIS domain
family: double-SIS domain
domain: Glucose-6-phosphate isomerase, conjectural
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

 Score = 51.1 bits (121), Expect = 6e-08
 Identities = 28/119 (23%), Positives = 51/119 (42%), Gaps = 7/119 (5%)

Query: 51  LKCRGTIFFTGVGKSGFVANKISQTLISLGIKSGFLNPLDALHGDIGILSSDDILVMFSK 110
           ++    ++ +G+G SG VA+ I    ++   +   +        D  + + D +L+  S 
Sbjct: 33  IEAMPRLYISGMGGSGVVADLIRDFSLTWNWEVEVIA-----VKDYFLKARDGLLIAVSY 87

Query: 111 SGNTEELLKVVPCAKAKGAYLVSVTSVEGNALAAVCDMNVHLPVERELCPFDLAPVTST 169
           SGNT E L  V  AK +    V++T+  G  LA +    V +P            +T+ 
Sbjct: 88  SGNTIETLYTVEYAKRRRIPAVAITT--GGRLAQMGVPTVIVPKASAPRAALPQLLTAA 144

>d1j5xa_ c.80.1.1 (A:) Hypothetical protein TM0813 {Thermotoga maritima [TaxId: 2336]} Length = 329

class: Alpha and beta proteins (a/b)
fold: SIS domain
superfamily: SIS domain
family: double-SIS domain
domain: Hypothetical protein TM0813
species: Thermotoga maritima [TaxId: 2336]

 Score = 50.4 bits (119), Expect = 9e-08
 Identities = 37/157 (23%), Positives = 64/157 (40%), Gaps = 3/157 (1%)

Query: 27  QQDHLNYFFQH--LSLPHTLTFTQTLLKCRGTIFFTGVGKSGFVANKISQTLISL-GIKS 83
           Q++ L  FF++  L+L  T  F++        + F G G S  +A  IS     +  I++
Sbjct: 10  QKNELKKFFENFVLNLEKTEIFSEIQKNLTDEVLFVGCGSSYNLALTISYYFERVLKIRT 69

Query: 84  GFLNPLDALHGDIGILSSDDILVMFSKSGNTEELLKVVPCAKAKGAYLVSVTSVEGNALA 143
             +   +     I  L    +  +FS++GNT E+L      K +    + +T  E + LA
Sbjct: 70  KAIPAGEVAFQKIPDLEERGLAFLFSRTGNTTEVLLANDVLKKRNHRTIGITIEEESRLA 129

Query: 144 AVCDMNVHLPVERELCPFDLAPVTSTAIQMVFGDTVA 180
              D+ +  PV  E      +        M   D +A
Sbjct: 130 KESDLPLVFPVREEAIVMTKSFSMILLSLMFLADKIA 166

>d2yzqa1 d.37.1.1 (A:123-278) Uncharacterized protein PH1780 {Pyrococcus horikoshii [TaxId: 53953]} Length = 156

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH1780
species: Pyrococcus horikoshii [TaxId: 53953]

 Score = 47.3 bits (111), Expect = 3e-07
 Identities = 26/154 (16%), Positives = 46/154 (29%), Gaps = 33/154 (21%)

Query: 210 KVQDVMKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFT---------- 259
           +++     Q+ + +  EG  +   L  L       L V+D E +L+G             
Sbjct: 5   EIEPYY--QRYVSIVWEGTPLKAALKALLLSNSMALPVVDSEGNLVGIVDETDLLRDSEI 62

Query: 260 -------------------DGDLRRTLKASGEGIFKLTVGEMCNRSPRTIGPDAMAVEAM 300
                              +       +     +    V E+  R      P     E  
Sbjct: 63  VRIMKSTELAASSEEEWILESHPTLLFEKFELQLPNKPVAEIMTRDVIVATPHMTVHEVA 122

Query: 301 QKMESPPSPVQFLPVINRQNILIGIVTLHGLVSA 334
            KM      ++ LPVI  +  LIG++    L+  
Sbjct: 123 LKMAK--YSIEQLPVIRGEGDLIGLIRDFDLLKV 154

>d1pbja3 d.37.1.1 (A:2-121) Hypothetical protein MTH1622 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 120

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein MTH1622
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

 Score = 46.4 bits (109), Expect = 3e-07
 Identities = 29/127 (22%), Positives = 53/127 (41%), Gaps = 7/127 (5%)

Query: 210 KVQDVMKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRRTLKA 269
           +V+DVM    ++        + D L        G  +V+ E   +    T   L    + 
Sbjct: 1   RVEDVM--VTDVDTIDITASLEDVLRNYVENAKGSSVVVKEGVRVGIVTTWDVLEAIAE- 57

Query: 270 SGEGIFKLTVGEMCNRSPRTIGPDAMAVEAMQKMESPPSPVQFLPVINRQNILIGIVTLH 329
            G+ + ++ V E+  R   TI P A   EA +KM    + V  L V    + +IG+++  
Sbjct: 58  -GDDLAEVKVWEVMERDLVTISPRATIKEAAEKMVK--NVVWRLLVEE-DDEIIGVISAT 113

Query: 330 GLVSAGL 336
            ++ A +
Sbjct: 114 DILRAKM 120

>d2ef7a1 d.37.1.1 (A:1-127) Uncharacterized protein ST2348 {Sulfolobus tokodaii [TaxId: 111955]} Length = 127

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein ST2348
species: Sulfolobus tokodaii [TaxId: 111955]

 Score = 45.6 bits (107), Expect = 7e-07
 Identities = 21/124 (16%), Positives = 47/124 (37%), Gaps = 7/124 (5%)

Query: 211 VQDVMKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRRTLKAS 270
           V++ MK   ++    +   + D    +T K  G ++V+D    +        ++   K  
Sbjct: 6   VKEYMKT--QVISVTKDAKLNDIAKVMTEKNIGSVIVVDGNKPVGIITERDIVKAIGKGK 63

Query: 271 GEGIFKLTVGEMCNRSPRTIGPDAMAVEAMQKMESPPSPVQFLPVINRQNILIGIVTLHG 330
                          + R   P   A+  M++       ++ LPV++ +  L GI+++  
Sbjct: 64  SLETKAEEFMTASLITIREDSPITGALALMRQ-----FNIRHLPVVDDKGNLKGIISIRD 118

Query: 331 LVSA 334
           +  A
Sbjct: 119 ITRA 122

>d3ddja2 d.37.1.1 (A:1-135) Uncharacterized protein SSO3205 {Sulfolobus solfataricus [TaxId: 2287]} Length = 135

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein SSO3205
species: Sulfolobus solfataricus [TaxId: 2287]

 Score = 44.6 bits (104), Expect = 2e-06
 Identities = 22/132 (16%), Positives = 48/132 (36%), Gaps = 11/132 (8%)

Query: 210 KVQDVMKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRR---- 265
            ++ +M   K  P+  + D +     ++   G G ++V +E+   + T  D         
Sbjct: 2   NIETLMI--KNPPILSKEDRLGSAFKKINEGGIGRIIVANEKIEGLLTTRDLLSTVESYC 59

Query: 266 ---TLKASGEGIFKLTVGEMCNRSPRTIGPDAMAVEAMQKMESPPSPVQFLPVINRQNIL 322
                +     I    + +    +P T+   +    A+  M +       LPV++  +  
Sbjct: 60  KDSCSQGDLYHISTTPIIDYMTPNPVTVYNTSDEFTAINIMVTRN--FGSLPVVDINDKP 117

Query: 323 IGIVTLHGLVSA 334
           +GIVT    +  
Sbjct: 118 VGIVTEREFLLL 129

>d2ooxe2 d.37.1.1 (E:182-334) Uncharacterized protein C1556.08c {Schizosaccharomyces pombe [TaxId: 4896]} Length = 153

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein C1556.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

 Score = 43.8 bits (102), Expect = 5e-06
 Identities = 17/131 (12%), Positives = 39/131 (29%), Gaps = 9/131 (6%)

Query: 211 VQDVMKP-QKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRRTLKA 269
           +  +       L        + D +  L  K    + +++ E  L+  +   D+   ++ 
Sbjct: 3   LNQMTIGTWSNLATASMETKVYDVIKMLAEKNISAVPIVNSEGTLLNVYESVDVMHLIQD 62

Query: 270 SGEGIFKL------TVGEMCNRSPRTIGPDAMAVEAMQKMESPPSPVQFLPVINRQNILI 323
                  L                 T             ++   S V  L V++    L 
Sbjct: 63  GDYSNLDLSVGEALLKRPANFDGVHTCRATDRLDGIFDAIK--HSRVHRLFVVDENLKLE 120

Query: 324 GIVTLHGLVSA 334
           GI++L  +++ 
Sbjct: 121 GILSLADILNY 131

>d2riha1 d.37.1.1 (A:2-132) Uncharacterized protein PAE2072 {Pyrobaculum aerophilum [TaxId: 13773]} Length = 131

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PAE2072
species: Pyrobaculum aerophilum [TaxId: 13773]

 Score = 42.6 bits (99), Expect = 8e-06
 Identities = 17/127 (13%), Positives = 45/127 (35%), Gaps = 9/127 (7%)

Query: 210 KVQDVMKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVID--EEYHLIGTFTDGDLRRTL 267
           +  +++K  +      E   I +   EL     G  ++         +   ++ D+ R +
Sbjct: 2   RTSELLK--RPPVSLPETATIREVATELAKNRVGLAVLTARDNPKRPVAVVSERDILRAV 59

Query: 268 KASGEGIFKLTVGEMCNRSPRTIGPDAMAVEAMQKMESPPSPVQFLPVINRQNILIGIVT 327
               +             +     P  +A E M++       ++ + V+N+   L+G+++
Sbjct: 60  AQRLDLDGPAMPIANSPITVLDTDPVHVAAEKMRRHN-----IRHVVVVNKNGELVGVLS 114

Query: 328 LHGLVSA 334
           +  L   
Sbjct: 115 IRDLCFE 121

>d3ddja1 d.37.1.1 (A:136-276) Uncharacterized protein SSO3205 {Sulfolobus solfataricus [TaxId: 2287]} Length = 141

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein SSO3205
species: Sulfolobus solfataricus [TaxId: 2287]

 Score = 42.7 bits (99), Expect = 8e-06
 Identities = 27/132 (20%), Positives = 54/132 (40%), Gaps = 9/132 (6%)

Query: 208 IFKVQDVMKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRRTL 267
           IF V+  M    ++    +   +   +  +  +G   L VID++  ++G  T  +  + L
Sbjct: 1   IFPVKVFMST--KVQTIYKEVRLDQAVKLMLRRGFRRLPVIDDDNKVVGIVTVVNAIKQL 58

Query: 268 -----KASGEGIFKLTVGEMCNRSPRTIGPDAMAVEAMQKMESPPSPVQFLPVINRQNIL 322
                K   +  +   V ++   +  TI   A    A  +M      +  L ++N+ N +
Sbjct: 59  AKAVDKLDPDYFYGKVVKDVMVTNLVTIDELASVNRAAAEMIV--KRIGSLLILNKDNTI 116

Query: 323 IGIVTLHGLVSA 334
            GI+T   L+ A
Sbjct: 117 RGIITERDLLIA 128

>d1jr1a4 d.37.1.1 (A:113-232) Type II inosine monophosphate dehydrogenase CBS domains {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} Length = 120

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Type II inosine monophosphate dehydrogenase CBS domains
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

 Score = 42.0 bits (98), Expect = 9e-06
 Identities = 19/115 (16%), Positives = 33/115 (28%), Gaps = 7/115 (6%)

Query: 223 VCKEGDLIMDQLVELTSKGCGCLLVIDE---EYHLIGTFTDGDLRRTLKASGEGIFKLTV 279
           V    D + D        G   + + D       L+G  +  D+        E    L  
Sbjct: 8   VLSPKDRVRDVFEAKARHGFCGIPITDTGRMGSRLVGIISSRDIDF--LKEEEHDRFLEE 65

Query: 280 GEMCNRSPRTIGPDAMAVEAMQKMESPPSPVQFLPVINRQNILIGIVTLHGLVSA 334
                             EA + ++   S    LP++N  + L+ I+    L   
Sbjct: 66  IMTKREDLVVAPAGITLKEANEILQR--SKKGKLPIVNENDELVAIIARTDLKKN 118

>d1jr1a4 d.37.1.1 (A:113-232) Type II inosine monophosphate dehydrogenase CBS domains {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} Length = 120

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Type II inosine monophosphate dehydrogenase CBS domains
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

 Score = 36.7 bits (84), Expect = 9e-04
 Identities = 11/56 (19%), Positives = 26/56 (46%)

Query: 210 KVQDVMKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRR 265
            ++++M  +++L V   G  + +    L     G L +++E   L+      DL++
Sbjct: 62  FLEEIMTKREDLVVAPAGITLKEANEILQRSKKGKLPIVNENDELVAIIARTDLKK 117

>d2yzqa2 d.37.1.1 (A:1-122) Uncharacterized protein PH1780 {Pyrococcus horikoshii [TaxId: 53953]} Length = 122

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH1780
species: Pyrococcus horikoshii [TaxId: 53953]

 Score = 40.3 bits (93), Expect = 5e-05
 Identities = 14/125 (11%), Positives = 40/125 (32%), Gaps = 11/125 (8%)

Query: 210 KVQDVMKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRRTLKA 269
           +V+ +M                  L            V+++E  L+G  +   +      
Sbjct: 2   RVKTIMTQ--NPVTITLPATRNYALELFKKYKVRSFPVVNKEGKLVGIISVKRILVN--- 56

Query: 270 SGEGIFKLTVGEMCNRSPRTIGPDAMAVEAMQKMESPPSPVQFLPVINRQNILIGIVTLH 329
                 +  +  +  R    +  +    +A + M       + + V++ +   +GI+T+ 
Sbjct: 57  ----PDEEQLAMLVKRDVPVVKENDTLKKAAKLMLE--YDYRRVVVVDSKGKPVGILTVG 110

Query: 330 GLVSA 334
            ++  
Sbjct: 111 DIIRR 115

>d2j9la1 d.37.1.1 (A:578-746) Chloride channel protein 5, ClC-5 {Human (Homo sapiens) [TaxId: 9606]} Length = 169

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Chloride channel protein 5, ClC-5
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.7 bits (94), Expect = 6e-05
 Identities = 23/153 (15%), Positives = 48/153 (31%), Gaps = 32/153 (20%)

Query: 211 VQDVMKPQKELP---VCKEGDLIMDQLVELTSK---GCGCLLVIDEEYHLIGTFTDGDLR 264
             DVMKP++  P   V  +  + ++ +  + S+       ++V  E   L+G     DL 
Sbjct: 5   AMDVMKPRRNDPLLTVLTQDSMTVEDVETIISETTYSGFPVVVSRESQRLVGFVLRRDLI 64

Query: 265 R-----------------------TLKASGEGIFKLTVGEMCNRSPRTIGPDAMAVEAMQ 301
                                   +          L +  + + SP T+         + 
Sbjct: 65  ISIENARKKQDGVVSTSIIYFTEHSPPLPPYTPPTLKLRNILDLSPFTVTDLTPMEIVVD 124

Query: 302 KMESPPSPVQFLPVINRQNILIGIVTLHGLVSA 334
                   ++   V +    L+GI+T   ++  
Sbjct: 125 IFRK--LGLRQCLVTH-NGRLLGIITKKDVLKH 154

>d2d4za3 d.37.1.1 (A:527-606,A:691-770) Chloride channel protein, CBS tandem {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]} Length = 160

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Chloride channel protein, CBS tandem
species: Marbled electric ray (Torpedo marmorata) [TaxId: 7788]

 Score = 39.6 bits (91), Expect = 1e-04
 Identities = 18/151 (11%), Positives = 40/151 (26%), Gaps = 31/151 (20%)

Query: 210 KVQDVMKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYH--LIGTFTDGDLRRTL 267
           +V D+M    ++          D L  L          +D      L+G+    ++   L
Sbjct: 12  QVGDIMVR--DVTSIASTSTYGDLLHVLRQTKLKFFPFVDTPDTNTLLGSIDRTEVEGLL 69

Query: 268 K------------------------ASGEGIFKLTVGEMCNRSPRTIGPDAMAVEAMQKM 303
           +                           + +         ++SP  +       +     
Sbjct: 70  QRRISAYRRQPFEEMLTLEEIYRWEQREKNVVVNFETCRIDQSPFQLVEGTSLQKTHTLF 129

Query: 304 ESPPSPVQFLPVINRQNILIGIVTLHGLVSA 334
                 +    V +    L+G+V L  + +A
Sbjct: 130 SL--LGLDRAYVTS-MGKLVGVVALAEIQAA 157

>d2ooxe1 d.37.1.1 (E:3-181) Uncharacterized protein C1556.08c {Schizosaccharomyces pombe [TaxId: 4896]} Length = 179

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein C1556.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

 Score = 38.1 bits (87), Expect = 5e-04
 Identities = 18/147 (12%), Positives = 37/147 (25%), Gaps = 26/147 (17%)

Query: 210 KVQDVMKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVI-DEEYHLIGTFTDGDLRRTLK 268
              DV+     L V      +   L  LT        +   E     G  T  D    +K
Sbjct: 21  TSYDVLPTSFRLIVFDVTLFVKTSLSLLTLNNIVSAPLWDSEANKFAGLLTMADFVNVIK 80

Query: 269 ASG------------------EGIFKLTVGEMCNRSPRTIGPDAMAVEAMQKMESPPSPV 310
                                                  + P    ++A   M       
Sbjct: 81  YYYQSSSFPEAIAEIDKFRLLGLREVERKIGAIPPETIYVHPMHSLMDACLAMSKS--RA 138

Query: 311 QFLPVIN-----RQNILIGIVTLHGLV 332
           + +P+I+        +++ ++T + ++
Sbjct: 139 RRIPLIDVDGETGSEMIVSVLTQYRIL 165

>d2ouxa2 d.37.1.1 (A:136-262) Magnesium transporter MgtE {Enterococcus faecalis [TaxId: 1351]} Length = 127

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Magnesium transporter MgtE
species: Enterococcus faecalis [TaxId: 1351]

 Score = 37.1 bits (85), Expect = 7e-04
 Identities = 10/69 (14%), Positives = 26/69 (37%), Gaps = 2/69 (2%)

Query: 266 TLKASGEGIFKLTVGEMCNRSPRTIGPDAMAVEAMQKMESPPSPVQFLPVINRQNILIGI 325
           +L+          + ++ N    ++       +  Q +         +PV +  + L+GI
Sbjct: 54  SLRDLIVNDDDTLIADILNERVISVHVGDDQEDVAQTIR--DYDFLAVPVTDYDDHLLGI 111

Query: 326 VTLHGLVSA 334
           VT+  ++  
Sbjct: 112 VTVDDIIDV 120

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	336
d1m3sa_	186	Hypothetical protein YckF {Bacillus subtilis [TaxI	99.96
d1vima_	192	Hypothetical protein AF1796 {Archaeon Archaeoglobu	99.96
d1jeoa_	177	Probable 3-hexulose-6-phosphate isomerase MJ1247 {	99.95
d1pvma4	142	Hypothetical protein Ta0289 {Archaeon Thermoplasma	99.86
d1y5ha3	123	Hypothetical protein Rv2626c {Mycobacterium tuberc	99.85
d1yava3	132	Hypothetical protein YkuL {Bacillus subtilis [TaxI	99.83
d2o16a3	139	Hypothetical protein VC0737 {Vibrio cholerae [TaxI	99.83
d1vr9a3	121	Hypothetical protein TM0892, CBS tandem {Thermotog	99.83
d1pbja3	120	Hypothetical protein MTH1622 {Archaeon Methanobact	99.83
d2yzqa2	122	Uncharacterized protein PH1780 {Pyrococcus horikos	99.82
d2yzia1	132	Uncharacterized protein PH0107 {Pyrococcus horikos	99.82
d2rc3a1	127	Uncharacterized protein NE2398 {Nitrosomonas europ	99.82
d2ef7a1	127	Uncharacterized protein ST2348 {Sulfolobus tokodai	99.81
d1x94a_	191	Phosphoheptose isomerase GmhA1 {Vibrio cholerae [T	99.81
d3ddja1	141	Uncharacterized protein SSO3205 {Sulfolobus solfat	99.8
d2ouxa2	127	Magnesium transporter MgtE {Enterococcus faecalis	99.79
d1j5xa_	329	Hypothetical protein TM0813 {Thermotoga maritima [	99.79
d2yzqa1	156	Uncharacterized protein PH1780 {Pyrococcus horikos	99.78
d2ooxe2	153	Uncharacterized protein C1556.08c {Schizosaccharom	99.77
d2yvxa2	144	Magnesium transporter MgtE {Thermus thermophilus [	99.77
d2riha1	131	Uncharacterized protein PAE2072 {Pyrobaculum aerop	99.77
d1zfja4	126	Type II inosine monophosphate dehydrogenase CBS do	99.76
d2nyca1	140	Nuclear protein SNF4 {Baker's yeast (Saccharomyces	99.75
d3ddja2	135	Uncharacterized protein SSO3205 {Sulfolobus solfat	99.75
d2d4za3	160	Chloride channel protein, CBS tandem {Marbled elec	99.72
d2v8qe1	145	5'-AMP-activated protein kinase subunit gamma-1, A	99.71
d1nria_	248	Hypothetical protein HI0754 {Haemophilus influenza	99.7
d1x92a_	194	Phosphoheptose isomerase GmhA1 {Pseudomonas aerugi	99.7
d1o50a3	145	Hypothetical protein TM0935 {Thermotoga maritima [	99.7
d1tk9a_	188	Phosphoheptose isomerase GmhA1 {Campylobacter jeju	99.7
d1moqa_	366	"Isomerase domain" of glucosamine 6-phosphate synt	99.69
d1jr1a4	120	Type II inosine monophosphate dehydrogenase CBS do	99.69
d2j9la1	169	Chloride channel protein 5, ClC-5 {Human (Homo sap	99.69
d2v8qe2	159	5'-AMP-activated protein kinase subunit gamma-1, A	99.68
d2ooxe1	179	Uncharacterized protein C1556.08c {Schizosaccharom	99.63
d1x9ia_	300	Glucose-6-phosphate isomerase, conjectural {Archae	99.31
d2ouxa2	127	Magnesium transporter MgtE {Enterococcus faecalis	98.79
d1moqa_	366	"Isomerase domain" of glucosamine 6-phosphate synt	98.74
d2yvxa2	144	Magnesium transporter MgtE {Thermus thermophilus [	98.57
d2o16a3	139	Hypothetical protein VC0737 {Vibrio cholerae [TaxI	98.49
d2yzqa2	122	Uncharacterized protein PH1780 {Pyrococcus horikos	98.49
d3ddja1	141	Uncharacterized protein SSO3205 {Sulfolobus solfat	98.48
d2yzia1	132	Uncharacterized protein PH0107 {Pyrococcus horikos	98.47
d2yzqa1	156	Uncharacterized protein PH1780 {Pyrococcus horikos	98.47
d3ddja2	135	Uncharacterized protein SSO3205 {Sulfolobus solfat	98.47
d1y5ha3	123	Hypothetical protein Rv2626c {Mycobacterium tuberc	98.46
d2ef7a1	127	Uncharacterized protein ST2348 {Sulfolobus tokodai	98.46
d2v8qe1	145	5'-AMP-activated protein kinase subunit gamma-1, A	98.45
d1vr9a3	121	Hypothetical protein TM0892, CBS tandem {Thermotog	98.44
d1jr1a4	120	Type II inosine monophosphate dehydrogenase CBS do	98.41
d1pvma4	142	Hypothetical protein Ta0289 {Archaeon Thermoplasma	98.38
d2rc3a1	127	Uncharacterized protein NE2398 {Nitrosomonas europ	98.37
d1yava3	132	Hypothetical protein YkuL {Bacillus subtilis [TaxI	98.36
d1o50a3	145	Hypothetical protein TM0935 {Thermotoga maritima [	98.34
d1pbja3	120	Hypothetical protein MTH1622 {Archaeon Methanobact	98.27
d1zfja4	126	Type II inosine monophosphate dehydrogenase CBS do	98.26
d1j5xa_	329	Hypothetical protein TM0813 {Thermotoga maritima [	98.25
d2d4za3	160	Chloride channel protein, CBS tandem {Marbled elec	98.2
d2ooxe2	153	Uncharacterized protein C1556.08c {Schizosaccharom	98.19
d2nyca1	140	Nuclear protein SNF4 {Baker's yeast (Saccharomyces	98.12
d2j9la1	169	Chloride channel protein 5, ClC-5 {Human (Homo sap	98.1
d2v8qe2	159	5'-AMP-activated protein kinase subunit gamma-1, A	98.1
d2riha1	131	Uncharacterized protein PAE2072 {Pyrobaculum aerop	98.05
d2ooxe1	179	Uncharacterized protein C1556.08c {Schizosaccharom	97.87
d1c7qa_	442	Phosphoglucose isomerase, PGI {Bacillus stearother	97.12
d1vi6a_	193	Ribosomal protein S2 {Archaeon Archaeoglobus fulgi	96.82
d1q50a_	561	Phosphoglucose isomerase, PGI {Leishmania mexicana	96.34
d1iata_	556	Phosphoglucose isomerase, PGI {Human (Homo sapiens	95.51
d1p3da1	96	UDP-N-acetylmuramate-alanine ligase MurC {Haemophi	94.23
d1j6ua1	89	UDP-N-acetylmuramate-alanine ligase MurC {Thermoto	93.97
d2jfga1	93	UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase	93.77
d2gy9b1	218	Ribosomal protein S2 {Escherichia coli [TaxId: 562	92.83
d1ytla1	158	Acetyl-CoA decarbonylase/synthase complex epsilon	91.63
d1q6za1	160	Benzoylformate decarboxylase {Pseudomonas putida [	91.42
d2jioa2	597	Periplasmic nitrate reductase alpha chain {Desulfo	91.26
d2d59a1	139	Hypothetical protein PH1109 {Pyrococcus horikoshii	90.84
d2iv2x2	564	Formate dehydrogenase H {Escherichia coli [TaxId:	90.76
d2ji7a1	175	Oxalyl-CoA decarboxylase {Oxalobacter formigenes [	90.71
d1u9ya1	155	Phosphoribosylpyrophosphate synthetase {Methanocal	90.41
d1tifa_	76	Translation initiation factor IF3, N-terminal doma	89.33
d1dkua1	159	Phosphoribosylpyrophosphate synthetase {Bacillus s	89.28
d1ja1a2	177	NADPH-cytochrome p450 reductase, N-terminal domain	89.2
d1h0ha2	812	Tungsten containing formate dehydrogenase, large s	88.04
d1ogya2	670	Periplasmic nitrate reductase alpha chain {Rhodoba	87.8
d1t9ba1	171	Acetohydroxyacid synthase catalytic subunit {Baker	87.37
d2uubb1	234	Ribosomal protein S2 {Thermus thermophilus [TaxId:	86.93
d1kqfa2	817	Formate dehydrogenase N, alpha subunit {Escherichi	86.87
d2ctza1	421	O-acetyl-L-homoserine sulfhydrylase {Thermus therm	86.87
d1m2ka_	249	AF1676, Sir2 homolog (Sir2-AF1?) {Archaeon Archaeo	86.49
d1d7ya2	121	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	86.48
d2b4ya1	267	NAD-dependent deacetylase sirtuin-5 {Human (Homo s	85.64
d1ebda2	117	Dihydrolipoamide dehydrogenase {Bacillus stearothe	85.53
d2ihta1	177	Carboxyethylarginine synthase {Streptomyces clavul	85.03
d1y81a1	116	Hypothetical protein PF0725 {Pyrococcus furiosus [	84.91
d1m6ia2	137	Apoptosis-inducing factor (AIF) {Human (Homo sapie	84.35
d3grsa2	125	Glutathione reductase {Human (Homo sapiens) [TaxId	84.27
d2vapa1	209	Cell-division protein FtsZ {Archaeon Methanococcus	84.18
d1ybha1	179	Acetohydroxyacid synthase catalytic subunit {Thale	84.07
d1q1ra2	133	Putidaredoxin reductase {Pseudomonas putida [TaxId	84.01
d1lkvx_	213	FliG {Thermotoga maritima [TaxId: 2336]}	83.63
d1iuka_	136	Hypothetical protein TT1466 {Thermus thermophilus	82.68
d1w5fa1	194	Cell-division protein FtsZ {Thermotoga maritima [T	82.62
d1pjqa1	113	Siroheme synthase CysG, domain 1 {Salmonella typhi	81.44
d1y4ia1	397	Methionine gamma-lyase, MGL {Citrobacter freundii	81.08
d1nhpa2	123	NADH peroxidase {Enterococcus faecalis [TaxId: 135	80.73
d1qgna_	398	Cystathionine gamma-synthase, CGS {Common tobacco	80.65
d1onfa2	117	Glutathione reductase {Plasmodium falciparum [TaxI	80.29
d1pvda1	179	Pyruvate decarboxylase {Baker's yeast (Saccharomyc	80.25

>d1m3sa_ c.80.1.3 (A:) Hypothetical protein YckF {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: SIS domain
superfamily: SIS domain
family: mono-SIS domain
domain: Hypothetical protein YckF
species: Bacillus subtilis [TaxId: 1423]

Probab=99.96  E-value=1.4e-28  Score=202.12  Aligned_cols=174  Identities=18%  Similarity=0.301  Sum_probs=152.4

Q ss_pred             HHHHHHHHHHHHHHHhcCChhHHHHHHHHHHcCCCeEEEEeccchHHHHHHHHHHHHhcCCeeeecCCccccccccCCCC
Q 019775           21 LDLFKSQQDHLNYFFQHLSLPHTLTFTQTLLKCRGTIFFTGVGKSGFVANKISQTLISLGIKSGFLNPLDALHGDIGILS  100 (336)
Q Consensus        21 ~~~~~~~~~~l~~~~~~~~~~~i~~~~~~i~~a~~~I~i~G~G~s~~~a~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~  100 (336)
                      .++.+...+.++++.+.++.++++++++.|.++ +|||++|.|.|..+|.+|+++|.++|+++.++.+.     ....++
T Consensus         5 ~e~~~~~~~~i~~t~~~i~~~~i~~~~~~i~~a-~~I~i~G~G~S~~~a~~~~~~l~~lg~~~~~~~d~-----~~~~~~   78 (186)
T d1m3sa_           5 TEYVAEILNELHNSAAYISNEEADQLADHILSS-HQIFTAGAGRSGLMAKSFAMRLMHMGFNAHIVGEI-----LTPPLA   78 (186)
T ss_dssp             HHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHC-SCEEEECSHHHHHHHHHHHHHHHHTTCCEEETTST-----TCCCCC
T ss_pred             HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHcC-CeEEEEECcHHHHHHHHHHHHHHhccCCCCcCChh-----hcccCC
Confidence            456777788899999999999999999999999 69999999999999999999999999999988653     234678


Q ss_pred             CCcEEEEEeCCCCcHHHHHHHHHHHHcCCeEEEEeCCCCCccccccCEEEEcCCCcccCCC----CCCChhHHH--HHHH
Q 019775          101 SDDILVMFSKSGNTEELLKVVPCAKAKGAYLVSVTSVEGNALAAVCDMNVHLPVERELCPF----DLAPVTSTA--IQMV  174 (336)
Q Consensus       101 ~~dlvi~iS~sG~~~~~~~~~~~ak~~g~~vi~IT~~~~s~l~~~ad~~i~~~~~~~~~~~----~~~~~~s~~--~~~~  174 (336)
                      ++|++|++|+||++++++++++.||++|+++|+||++.+||++++||++|.+|...+....    ...++.+.+  ..++
T Consensus        79 ~~Dl~I~iS~sG~t~~~i~~~~~ak~~g~~iI~IT~~~~s~La~~ad~~i~i~~~~~~~~~~~~~s~~~~~s~~~~~~~~  158 (186)
T d1m3sa_          79 EGDLVIIGSGSGETKSLIHTAAKAKSLHGIVAALTINPESSIGKQADLIIRMPGSPKDQSNGSYKTIQPMGSLFEQTLLL  158 (186)
T ss_dssp             TTCEEEEECSSSCCHHHHHHHHHHHHTTCEEEEEESCTTSHHHHHCSEEEECSCCSCC-----CCCCSSTTHHHHHHHHH
T ss_pred             CCCEEEEecCccchhhhHHHHHHHHHCCCCEEEEecCCCchhhHhCCEEEEeCCCcccccCCCccccCcchHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999887654321    234555554  5578


Q ss_pred             HHHHHHHHHHhhcCCChHHHhhcCCC
Q 019775          175 FGDTVAIAMMGARNLTRDEYAANHPA  200 (336)
Q Consensus       175 l~d~l~~~~~~~~~~~~~~~~~~~~~  200 (336)
                      ++|.++..++++++.+.++++++|.+
T Consensus       159 ~~d~l~~~l~~~~~~~~~~~~~~H~n  184 (186)
T d1m3sa_         159 FYDAVILKLMEKKGLDSETMFTHHAN  184 (186)
T ss_dssp             HHHHHHHHHHHHTTCCTTTCCCCCCC
T ss_pred             HHHHHHHHHHHHhCcCHHHHHHHhhc
Confidence            99999999999999999999888875

>d1vima_ c.80.1.3 (A:) Hypothetical protein AF1796 {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: SIS domain
superfamily: SIS domain
family: mono-SIS domain
domain: Hypothetical protein AF1796
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.96  E-value=3.6e-28  Score=200.62  Aligned_cols=178  Identities=24%  Similarity=0.360  Sum_probs=155.6

Q ss_pred             HHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHcCCCeEEEEeccchHHHHHHHHHHHHhcCCeeeecCCccccccccC
Q 019775           18 NTLLDLFKSQQDHLNYFFQHLSLPHTLTFTQTLLKCRGTIFFTGVGKSGFVANKISQTLISLGIKSGFLNPLDALHGDIG   97 (336)
Q Consensus        18 ~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~i~~a~~~I~i~G~G~s~~~a~~~~~~l~~~g~~~~~~~~~~~~~~~~~   97 (336)
                      ..+.++++...+.++++.+.++.+.++++++.|.++ ++||++|.|.|..+|++|+++|.++|+++....+..     ..
T Consensus         5 ~s~~k~~e~~~~~i~~~~~~ld~~~i~~~~~~i~~a-~~I~i~G~G~S~~~a~~~~~~l~~lg~~~~~~~~~~-----~~   78 (192)
T d1vima_           5 MSLLRFLEVVSEHIKNLRNHIDLETVGEMIKLIDSA-RSIFVIGAGRSGYIAKAFAMRLMHLGYTVYVVGETV-----TP   78 (192)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHS-SCEEEECSHHHHHHHHHHHHHHHHTTCCEEETTSTT-----CC
T ss_pred             hHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHcC-CcEEEEecCcchhhhhhhhhhhcccccccccccccc-----cc
Confidence            346678999999999999999999999999999999 699999999999999999999999999999987643     34


Q ss_pred             CCCCCcEEEEEeCCCCcHHHHHHHHHHHHcCCeEEEEeCCCCCccccccCEEEEcCCCcccCC----CCCCCh--hHHHH
Q 019775           98 ILSSDDILVMFSKSGNTEELLKVVPCAKAKGAYLVSVTSVEGNALAAVCDMNVHLPVERELCP----FDLAPV--TSTAI  171 (336)
Q Consensus        98 ~~~~~dlvi~iS~sG~~~~~~~~~~~ak~~g~~vi~IT~~~~s~l~~~ad~~i~~~~~~~~~~----~~~~~~--~s~~~  171 (336)
                      .++++|++|+||+||++++++++++.||++|+++|+||++.+||++++||++|.+|+..+...    .+..++  .+..+
T Consensus        79 ~i~~~Dl~i~iS~sG~t~~~i~~~~~ak~~g~~vI~IT~~~~s~l~~~ad~~l~i~~~~~~~~~~~~~~~~p~~t~~~~~  158 (192)
T d1vima_          79 RITDQDVLVGISGSGETTSVVNISKKAKDIGSKLVAVTGKRDSSLAKMADVVMVVKGKMKQERDEILSQLAPLGTMFELT  158 (192)
T ss_dssp             CCCTTCEEEEECSSSCCHHHHHHHHHHHHHTCEEEEEESCTTSHHHHHCSEEEECCSSCTTCCHHHHHHHSGGGHHHHHH
T ss_pred             cccccccceeccccccchhhHHHHHHHHhhcccceeeeeccccccccccceEEEecCCccccccccccCccccchHHHHH
Confidence            578999999999999999999999999999999999999999999999999999998754211    111233  34566


Q ss_pred             HHHHHHHHHHHHHhhcCCChHHHhhcCCCC
Q 019775          172 QMVFGDTVAIAMMGARNLTRDEYAANHPAG  201 (336)
Q Consensus       172 ~~~l~d~l~~~~~~~~~~~~~~~~~~~~~~  201 (336)
                      +++++|.|+..++++++...+++++.|++.
T Consensus       159 ~~~~ld~l~~~l~~~~~~~~~~~~~~h~n~  188 (192)
T d1vima_         159 AMIFLDALVAEIMMQKHLTEKDLEARHAVL  188 (192)
T ss_dssp             HHHHHHHHHHHHHHHHTCCHHHHHHHSCCT
T ss_pred             HHHHHHHHHHHHHHHhCCCHHHHHHhcccC
Confidence            788999999999999999999999888543

>d1jeoa_ c.80.1.3 (A:) Probable 3-hexulose-6-phosphate isomerase MJ1247 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: SIS domain
superfamily: SIS domain
family: mono-SIS domain
domain: Probable 3-hexulose-6-phosphate isomerase MJ1247
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.95  E-value=6.7e-27  Score=190.20  Aligned_cols=168  Identities=24%  Similarity=0.356  Sum_probs=141.7

Q ss_pred             HHHHHHHHHHHHhcCC-hhHHHHHHHHHHcCCCeEEEEeccchHHHHHHHHHHHHhcCCeeeecCCccccccccCCCCCC
Q 019775           24 FKSQQDHLNYFFQHLS-LPHTLTFTQTLLKCRGTIFFTGVGKSGFVANKISQTLISLGIKSGFLNPLDALHGDIGILSSD  102 (336)
Q Consensus        24 ~~~~~~~l~~~~~~~~-~~~i~~~~~~i~~a~~~I~i~G~G~s~~~a~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~  102 (336)
                      ....+..+++....-+ +++++++++.|.++ +|||++|.|.|+.+|++|+++|.++|+++.+.++..     ...++++
T Consensus         7 ~~~~i~~l~~~~~~~~~~~~i~~~~~~i~~a-~~I~~~G~G~S~~~a~~~~~~l~~lg~~~~~~~~~~-----~~~~~~~   80 (177)
T d1jeoa_           7 VSNNILILKKFYTNDEWKNKLDSLIDRIIKA-KKIFIFGVGRSGYIGRCFAMRLMHLGFKSYFVGETT-----TPSYEKD   80 (177)
T ss_dssp             HHHHHHGGGHHHHCHHHHHHHHHHHHHHHHC-SSEEEECCHHHHHHHHHHHHHHHHTTCCEEETTSTT-----CCCCCTT
T ss_pred             HHHHHHHHHHHhhchHHHHHHHHHHHHHHCC-CeEEEEEccHHHHHHHHHHHHHHhcCCccccccccc-----ccccCCC
Confidence            4444555555544433 25799999999999 699999999999999999999999999999887653     3467899


Q ss_pred             cEEEEEeCCCCcHHHHHHHHHHHHcCCeEEEEeCCCCCccccccCEEEEcCCCcccCCCCCCChhHHHHHHHHHHHHHHH
Q 019775          103 DILVMFSKSGNTEELLKVVPCAKAKGAYLVSVTSVEGNALAAVCDMNVHLPVERELCPFDLAPVTSTAIQMVFGDTVAIA  182 (336)
Q Consensus       103 dlvi~iS~sG~~~~~~~~~~~ak~~g~~vi~IT~~~~s~l~~~ad~~i~~~~~~~~~~~~~~~~~s~~~~~~l~d~l~~~  182 (336)
                      |++|+||+||++++++++++.||++|+++|+||++ .+|++++||+++.++.+...  .......+..++++++|+|+..
T Consensus        81 Dl~I~iS~sG~t~~~i~~~~~ak~~g~~vI~IT~~-~~~l~~~aD~~l~~~~~~~~--~~~~~~~s~~~~l~~~d~l~~~  157 (177)
T d1jeoa_          81 DLLILISGSGRTESVLTVAKKAKNINNNIIAIVCE-CGNVVEFADLTIPLEVKKSK--YLPMGTTFEETALIFLDLVIAE  157 (177)
T ss_dssp             CEEEEEESSSCCHHHHHHHHHHHTTCSCEEEEESS-CCGGGGGCSEEEECCCCCBT--TBCTTHHHHHHHHHHHHHHHHH
T ss_pred             CeEEEeccccchHHHHHHHHHHHHcCCceeEEecC-CCcHHHhcCceEEEeecccc--cccCchHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999975 67899999999999887552  2223445667889999999999


Q ss_pred             HHhhcCCChHHHhhcCCC
Q 019775          183 MMGARNLTRDEYAANHPA  200 (336)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~  200 (336)
                      ++++++.+.+++.++|++
T Consensus       158 l~~~~~~~~~~~~~~H~n  175 (177)
T d1jeoa_         158 IMKRLNLDESEIIKRHCN  175 (177)
T ss_dssp             HHHHTTCCHHHHHHHSCC
T ss_pred             HHHHhCcCHHHHHHhccc
Confidence            999999999999999964

>d1pvma4 d.37.1.1 (A:1-142) Hypothetical protein Ta0289 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein Ta0289
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.86  E-value=1.3e-21  Score=153.12  Aligned_cols=123  Identities=12%  Similarity=0.200  Sum_probs=113.2

Q ss_pred             hhhhhhccccCCCCccccCCCcHHHHHHHHHhcCcceEEEEcCCCcEEEEeeHHHHHHHHHhcCCchhhhhHhhhcCCCC
Q 019775          208 IFKVQDVMKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRRTLKASGEGIFKLTVGEMCNRSP  287 (336)
Q Consensus       208 ~~~v~~im~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~it~~dl~~~~~~~~~~~~~~~i~~~~~~~~  287 (336)
                      .|+|+++|.++  ++++++++|+.+|++.|.+++++++||+|++|+++|++|.+|+.......+......++.++|.+++
T Consensus         2 ~m~v~dim~~~--~~~v~~~~tl~~a~~~m~~~~~~~~~V~d~~~~~~Giit~~di~~~~~~~~~~~~~~~v~~im~~~~   79 (142)
T d1pvma4           2 FMRVEKIMNSN--FKTVNWNTTVFDAVKIMNENHLYGLVVKDDNGNDVGLLSERSIIKRFIPRNKKPDEVPIRLVMRKPI   79 (142)
T ss_dssp             CCBGGGTSBTT--CCEEETTCBHHHHHHHHHHHTCCEEEEECTTSCEEEEEEHHHHHHHTGGGCCCGGGSBGGGTSBSSC
T ss_pred             eEEHHHhCCCC--CcEECCcCcHHHHHHHHHHCCCceEeeeccCCcccceEEeechhhhhhhhccccccccccccccccc
Confidence            47899999998  5599999999999999999999999999999999999999999887766555555678999999999


Q ss_pred             eeeCCCccHHHHHHHhcCCCCCccEeEEEeCCCcEEEEEehhhHhhc
Q 019775          288 RTIGPDAMAVEAMQKMESPPSPVQFLPVINRQNILIGIVTLHGLVSA  334 (336)
Q Consensus       288 ~~v~~~~~l~~~~~~~~~~~~~~~~l~Vv~~~~~~iGiit~~di~~~  334 (336)
                      .++.+++++.++++.|.++  +.+.+||+|++|+++|+||+.||+++
T Consensus        80 ~~v~~~~~l~~~~~~m~~~--~~~~lpVvd~~g~l~Giit~~Dil~~  124 (142)
T d1pvma4          80 PKVKSDYDVKDVAAYLSEN--GLERCAVVDDPGRVVGIVTLTDLSRY  124 (142)
T ss_dssp             CEEETTCBHHHHHHHHHHH--TCSEEEEECTTCCEEEEEEHHHHTTT
T ss_pred             ccccchhhHHHHHHHHHHc--CCcEEEEEecCCEEEEEEEHHHHHHH
Confidence            9999999999999999999  99999999999999999999999874

>d1y5ha3 d.37.1.1 (A:2-124) Hypothetical protein Rv2626c {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein Rv2626c
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.85  E-value=1.3e-21  Score=149.32  Aligned_cols=120  Identities=24%  Similarity=0.315  Sum_probs=109.2

Q ss_pred             hhhhccccCCCCccccCCCcHHHHHHHHHhcCcceEEEEcCCCcEEEEeeHHHHHHHHHhcCCchhhhhHhhhcCCCCee
Q 019775          210 KVQDVMKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRRTLKASGEGIFKLTVGEMCNRSPRT  289 (336)
Q Consensus       210 ~v~~im~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~it~~dl~~~~~~~~~~~~~~~i~~~~~~~~~~  289 (336)
                      +++++|.++  ++++++++++.+|++.|.+++++.+||+|++|+++|++|.+||+......+.......+.++|.+++.+
T Consensus         2 t~~diM~~~--~~~v~~~~tl~~a~~~m~~~~~~~~pVvd~~~~~~Giit~~Di~~~~~~~~~~~~~~~v~~im~~~~~~   79 (123)
T d1y5ha3           2 TARDIMNAG--VTCVGEHETLTAAAQYMREHDIGALPICGDDDRLHGMLTDRDIVIKGLAAGLDPNTATAGELARDSIYY   79 (123)
T ss_dssp             CHHHHSEET--CCCEETTSBHHHHHHHHHHHTCSEEEEECGGGBEEEEEEHHHHHHTTGGGTCCTTTSBHHHHHTTCCCC
T ss_pred             CHHHhcCCC--CcEECCcCcHHHHHHHHHHcCCCceEEEeccchhhhhhhhhhHhhhhhhcCCCcccceEEEEeecccee
Confidence            689999987  569999999999999999999999999998899999999999987766555544466789999999999


Q ss_pred             eCCCccHHHHHHHhcCCCCCccEeEEEeCCCcEEEEEehhhHhhc
Q 019775          290 IGPDAMAVEAMQKMESPPSPVQFLPVINRQNILIGIVTLHGLVSA  334 (336)
Q Consensus       290 v~~~~~l~~~~~~~~~~~~~~~~l~Vv~~~~~~iGiit~~di~~~  334 (336)
                      +.+++++.++++.|.++  +.+.+||+|+ |+++|+||+.||+++
T Consensus        80 v~~~~~~~~~~~~m~~~--~~~~lpVvd~-~~lvGiit~~Dil~~  121 (123)
T d1y5ha3          80 VDANASIQEMLNVMEEH--QVRRVPVISE-HRLVGIVTEADIARH  121 (123)
T ss_dssp             EETTCCHHHHHHHHHHH--TCSEEEEEET-TEEEEEEEHHHHHHT
T ss_pred             eeecchHHHHHHHHHHc--CceEEEEEEC-CEEEEEEEHHHHHhh
Confidence            99999999999999999  9999999986 899999999999986

>d1yava3 d.37.1.1 (A:13-144) Hypothetical protein YkuL {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein YkuL
species: Bacillus subtilis [TaxId: 1423]

Probab=99.83  E-value=1.1e-20  Score=145.88  Aligned_cols=121  Identities=17%  Similarity=0.219  Sum_probs=107.9

Q ss_pred             hhhhccccCCCCccccCCCcHHHHHHHHHhcCcceEEEEcCCCcEEEEeeHHHHHHHHHhcCCc----hhhhhHhhhcCC
Q 019775          210 KVQDVMKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRRTLKASGEG----IFKLTVGEMCNR  285 (336)
Q Consensus       210 ~v~~im~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~it~~dl~~~~~~~~~~----~~~~~i~~~~~~  285 (336)
                      +|+++|.|...++++++++|+.+|++.|.+++++++||+|++|+++|+++..|++..+......    ....++.++|.+
T Consensus         3 tv~~~mip~~~v~~v~~~~tl~~a~~~m~~~~~s~~pVvd~~~~~vGiit~~di~~~~~~~~~~~~~~~~~~~v~~~m~~   82 (132)
T d1yava3           3 TVGQFMIEADKVAHVQVGNNLEHALLVLTKTGYTAIPVLDPSYRLHGLIGTNMIMNSIFGLERIEFEKLDQITVEEVMLT   82 (132)
T ss_dssp             BHHHHSEEGGGSCCEETTCBHHHHHHHHHHHCCSEEEEECTTCBEEEEEEHHHHHHHHBCSSSBCGGGTTTSBHHHHSBC
T ss_pred             CHHHccccccceEEEcCCCCHHHHHHHHHhhCCCceEEeecccccccEEEcchhHHHhhccccccccccccccccccccc
Confidence            6899999887789999999999999999999999999999999999999999999988643221    224678999999


Q ss_pred             CCeeeCCCccHHHHHHHhcCCCCCccEeEEEeCCCcEEEEEehhhHhhc
Q 019775          286 SPRTIGPDAMAVEAMQKMESPPSPVQFLPVINRQNILIGIVTLHGLVSA  334 (336)
Q Consensus       286 ~~~~v~~~~~l~~~~~~~~~~~~~~~~l~Vv~~~~~~iGiit~~di~~~  334 (336)
                      ++.++.+++++.+++..|.++  +  .+||+|++|+++|+||++|++++
T Consensus        83 ~~~~v~~~~~l~~~~~~~~~~--~--~l~Vvd~~~~~~Givt~~dil~~  127 (132)
T d1yava3          83 DIPRLHINDPIMKGFGMVINN--G--FVCVENDEQVFEGIFTRRVVLKE  127 (132)
T ss_dssp             SCCEEETTSBHHHHHHHTTTC--S--EEEEECTTCBEEEEEEHHHHHHH
T ss_pred             cccccccchhHHHHHHHHHhC--C--EEEEEccCCEEEEEEEHHHHHHH
Confidence            999999999999999999866  4  59999999999999999999975

>d2o16a3 d.37.1.1 (A:20-158) Hypothetical protein VC0737 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein VC0737
species: Vibrio cholerae [TaxId: 666]

Probab=99.83  E-value=1.5e-20  Score=146.42  Aligned_cols=121  Identities=21%  Similarity=0.298  Sum_probs=108.0

Q ss_pred             hhhhhccccCCCCccccCCCcHHHHHHHHHhcCcceEEEEcCCCcEEEEeeHHHHHHHHHhcCC-------chhhhhHhh
Q 019775          209 FKVQDVMKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRRTLKASGE-------GIFKLTVGE  281 (336)
Q Consensus       209 ~~v~~im~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~it~~dl~~~~~~~~~-------~~~~~~i~~  281 (336)
                      ++|+|+|.++  +++++++.|+.+|++.|.+++++.+||+|++|+++|++|.+|+++.......       .....++.+
T Consensus         2 i~v~diM~~~--~~~v~~~~tl~~a~~~m~~~~~~~lpVvd~~~~~~Giit~~dl~~~~~~~~~~~~~~~~~~~~~~v~~   79 (139)
T d2o16a3           2 IKVEDMMTRH--PHTLLRTHTLNDAKHLMEALDIRHVPIVDANKKLLGIVSQRDLLAAQESSLQRSAQGDSLAFETPLFE   79 (139)
T ss_dssp             CBGGGTSEES--CCCBCTTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHHHHHHHHCC---------CCCBHHH
T ss_pred             EEHHHhCcCC--CeEECCcCCHHHHHHHHHHcCCCeeeeecccccccccccHHHHHHHHHhhhhhhhcccccccccchhH
Confidence            5789999987  4599999999999999999999999999999999999999999987755321       122468999


Q ss_pred             hcCCCCeeeCCCccHHHHHHHhcCCCCCccEeEEEeCCCcEEEEEehhhHhhc
Q 019775          282 MCNRSPRTIGPDAMAVEAMQKMESPPSPVQFLPVINRQNILIGIVTLHGLVSA  334 (336)
Q Consensus       282 ~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~l~Vv~~~~~~iGiit~~di~~~  334 (336)
                      +|.+++.++++++++.++++.|.++  +.+.+||+|+ |+++|+||+.||+++
T Consensus        80 im~~~~~~v~~~~~l~~a~~~m~~~--~~~~lpVvd~-~~lvGiit~~Dil~~  129 (139)
T d2o16a3          80 VMHTDVTSVAPQAGLKESAIYMQKH--KIGCLPVVAK-DVLVGIITDSDFVTI  129 (139)
T ss_dssp             HSCSCEEEBCTTSBHHHHHHHHHHT--TCSCEEEEET-TEEEEEECHHHHHHH
T ss_pred             hhccccccccccchHHHHHHHHHHc--CceEEEEEEC-CEEEEEEEHHHHHHH
Confidence            9999999999999999999999999  9999999997 999999999999875

>d1vr9a3 d.37.1.1 (A:1-121) Hypothetical protein TM0892, CBS tandem {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein TM0892, CBS tandem
species: Thermotoga maritima [TaxId: 2336]

Probab=99.83  E-value=7.4e-21  Score=144.60  Aligned_cols=115  Identities=20%  Similarity=0.259  Sum_probs=106.1

Q ss_pred             hhhhhccccCCCCccccCCCcHHHHHHHHHhcCcceEEEEcCCCcEEEEeeHHHHHHHHHhcCCchhhhhHhhhcCCCCe
Q 019775          209 FKVQDVMKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRRTLKASGEGIFKLTVGEMCNRSPR  288 (336)
Q Consensus       209 ~~v~~im~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~it~~dl~~~~~~~~~~~~~~~i~~~~~~~~~  288 (336)
                      |+|+++|.++  ++++++++|+++++++|.+++.+.+||+|++|+++|+++.+|++...       ...++.++|..++.
T Consensus         1 m~v~~~m~~~--~~~v~~~~tv~ea~~~m~~~~~~~v~Vvd~~~~~~Gii~~~dl~~~~-------~~~~v~~~~~~~~~   71 (121)
T d1vr9a3           1 MKVKKWVTQD--FPMVEESATVRECLHRMRQYQTNECIVKDREGHFRGVVNKEDLLDLD-------LDSSVFNKVSLPDF   71 (121)
T ss_dssp             CBGGGGCBSC--SCEEETTCBHHHHHHHHHHTTSSEEEEECTTSBEEEEEEGGGGTTSC-------TTSBSGGGCBCTTC
T ss_pred             CCchhhhcCC--CeEECCCCCHHHHHHhhhhcCcEEEEEEeCCceeEEEeehhhhhhhh-------ccccccccccCccE
Confidence            5789999998  56999999999999999999999999999999999999999997531       25688999999999


Q ss_pred             eeCCCccHHHHHHHhcCCCCCccEeEEEeCCCcEEEEEehhhHhhc
Q 019775          289 TIGPDAMAVEAMQKMESPPSPVQFLPVINRQNILIGIVTLHGLVSA  334 (336)
Q Consensus       289 ~v~~~~~l~~~~~~~~~~~~~~~~l~Vv~~~~~~iGiit~~di~~~  334 (336)
                      ++++++++.++++.|.++  +...+||+|++|+++|+||..|++++
T Consensus        72 ~v~~~~~l~~~~~~~~~~--~~~~lpVvde~g~~~Gvit~~dil~~  115 (121)
T d1vr9a3          72 FVHEEDNITHALLLFLEH--QEPYLPVVDEEMRLKGAVSLHDFLEA  115 (121)
T ss_dssp             CEETTSBHHHHHHHHHHC--CCSEEEEECTTCBEEEEEEHHHHHHH
T ss_pred             EECCCCCHHHHHHHHHhc--CceeeeeECCCCeEEEEEEHHHHHHH
Confidence            999999999999999999  99999999999999999999999875

>d1pbja3 d.37.1.1 (A:2-121) Hypothetical protein MTH1622 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein MTH1622
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.83  E-value=2e-20  Score=141.92  Aligned_cols=120  Identities=24%  Similarity=0.293  Sum_probs=107.9

Q ss_pred             hhhhccccCCCCccccCCCcHHHHHHHHHhcCcceEEEEcCCCcEEEEeeHHHHHHHHHhcCCchhhhhHhhhcCCCCee
Q 019775          210 KVQDVMKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRRTLKASGEGIFKLTVGEMCNRSPRT  289 (336)
Q Consensus       210 ~v~~im~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~it~~dl~~~~~~~~~~~~~~~i~~~~~~~~~~  289 (336)
                      +|+++|.++  ++++++++|+.+|++.|.+++++.+||++ +|+++|++|.+||++.+.... .....++.++|.+++.+
T Consensus         1 kV~diM~~~--~~~v~~~~sl~ea~~~~~~~~~~~~~V~~-~~~~~Gvit~~Di~~~l~~~~-~~~~~~v~~~m~~~~~~   76 (120)
T d1pbja3           1 RVEDVMVTD--VDTIDITASLEDVLRNYVENAKGSSVVVK-EGVRVGIVTTWDVLEAIAEGD-DLAEVKVWEVMERDLVT   76 (120)
T ss_dssp             CHHHHCBCS--CCEEETTCBHHHHHHHHHHHCCCEEEEEE-TTEEEEEEEHHHHHHHHHHTC-CTTTSBHHHHCBCGGGE
T ss_pred             ChHHhCCCC--CeEECCcCcHHHHHHHHHHcCceEEEEEe-CCcEEEEEEeeeccccccccc-cccceeEeeeccccccc
Confidence            478999997  56999999999999999999999999997 589999999999999887633 33467899999999999


Q ss_pred             eCCCccHHHHHHHhcCCCCCccEeEEEeCCCcEEEEEehhhHhhcCC
Q 019775          290 IGPDAMAVEAMQKMESPPSPVQFLPVINRQNILIGIVTLHGLVSAGL  336 (336)
Q Consensus       290 v~~~~~l~~~~~~~~~~~~~~~~l~Vv~~~~~~iGiit~~di~~~~~  336 (336)
                      +.+++++.++++.|.++  +.+.+||+++ |+++|+||..||+++++
T Consensus        77 v~~~~~l~~a~~~m~~~--~~~~l~V~~~-~~l~Givt~~Dil~A~~  120 (120)
T d1pbja3          77 ISPRATIKEAAEKMVKN--VVWRLLVEED-DEIIGVISATDILRAKM  120 (120)
T ss_dssp             ECTTSCHHHHHHHHHHH--TCSEEEEEET-TEEEEEEEHHHHHHHHC
T ss_pred             ccchhHHHHHHHHHHHc--CCeEEEEEEC-CEEEEEEEHHHHHhcCC
Confidence            99999999999999999  8999999875 99999999999999864

>d2yzqa2 d.37.1.1 (A:1-122) Uncharacterized protein PH1780 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH1780
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.82  E-value=3e-21  Score=147.00  Aligned_cols=115  Identities=12%  Similarity=0.135  Sum_probs=88.1

Q ss_pred             hhhhhccccCCCCccccCCCcHHHHHHHHHhcCcceEEEEcCCCcEEEEeeHHHHHHHHHhcCCchhhhhHhhhcCCCCe
Q 019775          209 FKVQDVMKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRRTLKASGEGIFKLTVGEMCNRSPR  288 (336)
Q Consensus       209 ~~v~~im~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~it~~dl~~~~~~~~~~~~~~~i~~~~~~~~~  288 (336)
                      |+|+++|.++  ++++++++++.+|++.|.+++++.+||+|++|+++|+|+.+|++....       ..++.++|.+++.
T Consensus         1 m~v~diM~~~--~v~v~~~~~v~~a~~~m~~~~~~~~~Vvd~~~~~~G~it~~dl~~~~~-------~~~~~~~~~~~~~   71 (122)
T d2yzqa2           1 MRVKTIMTQN--PVTITLPATRNYALELFKKYKVRSFPVVNKEGKLVGIISVKRILVNPD-------EEQLAMLVKRDVP   71 (122)
T ss_dssp             CBHHHHSEES--CCCEESSCC------------CCEEEEECTTCCEEEEEESSCC-----------------CCCBSCCC
T ss_pred             CCcccccCCC--CEEECCcCcHHHHHHHHHHcCCcEEEEEeccccchhhhhcchhhhhhc-------ccchhhcccccee
Confidence            5789999987  559999999999999999999999999999999999999999986432       4678899999999


Q ss_pred             eeCCCccHHHHHHHhcCCCCCccEeEEEeCCCcEEEEEehhhHhhc
Q 019775          289 TIGPDAMAVEAMQKMESPPSPVQFLPVINRQNILIGIVTLHGLVSA  334 (336)
Q Consensus       289 ~v~~~~~l~~~~~~~~~~~~~~~~l~Vv~~~~~~iGiit~~di~~~  334 (336)
                      ++.+++++.++++.|.++  +.+.+||+|++|+++|+||+.||+++
T Consensus        72 ~v~~~~~l~~~~~~~~~~--~~~~lpVvd~~~~liGiit~~dil~~  115 (122)
T d2yzqa2          72 VVKENDTLKKAAKLMLEY--DYRRVVVVDSKGKPVGILTVGDIIRR  115 (122)
T ss_dssp             EEETTSBHHHHHHHHHHH--TCSEEEEECTTSCEEEEEEHHHHHHH
T ss_pred             ecchhhHHHHHHHHHHHc--CcEEEEEEeCCCEEEEEEEHHHHHHH
Confidence            999999999999999999  99999999999999999999999975

>d2yzia1 d.37.1.1 (A:4-135) Uncharacterized protein PH0107 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH0107
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.82  E-value=3.1e-20  Score=143.32  Aligned_cols=121  Identities=21%  Similarity=0.309  Sum_probs=109.0

Q ss_pred             hhhhhhccccCCCCccccCCCcHHHHHHHHHhcCcceEEEEcCCCcEEEEeeHHHHHHHHHhcCCchhhhhHhhhcCCCC
Q 019775          208 IFKVQDVMKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRRTLKASGEGIFKLTVGEMCNRSP  287 (336)
Q Consensus       208 ~~~v~~im~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~it~~dl~~~~~~~~~~~~~~~i~~~~~~~~  287 (336)
                      ..+|+++|..+  ++++++++|+.++++.|.+++++.+||+|++|+++|++|..|++..+.... .....++.++|.+++
T Consensus         4 ~~pV~~im~~~--~~~v~~~~t~~~a~~~m~~~~~~~~~Vvd~~~~~~Giit~~di~~~~~~~~-~~~~~~v~~im~~~~   80 (132)
T d2yzia1           4 KAPIKVYMTKK--LLGVKPSTSVQEASRLMMEFDVGSLVVINDDGNVVGFFTKSDIIRRVIVPG-LPYDIPVERIMTRNL   80 (132)
T ss_dssp             TSBGGGTCBCC--CCEECTTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHTTTTC-CCTTSBGGGTCBCSC
T ss_pred             CCcHHHHcCCC--CeEECCcCcHHHHHHHHHHcCCcEEEEecccceeeeeeeHHHHHHHHhhcc-CccceeEeecccccc
Confidence            45799999987  669999999999999999999999999999999999999999998776533 234578999999999


Q ss_pred             eeeCCCccHHHHHHHhcCCCCCccEeEEEeCCCcEEEEEehhhHhhc
Q 019775          288 RTIGPDAMAVEAMQKMESPPSPVQFLPVINRQNILIGIVTLHGLVSA  334 (336)
Q Consensus       288 ~~v~~~~~l~~~~~~~~~~~~~~~~l~Vv~~~~~~iGiit~~di~~~  334 (336)
                      .++.+++++.++++.|.++  +.+.+||+++ |+++|+||..|++++
T Consensus        81 ~~v~~~~~~~~~~~~m~~~--~~~~l~V~~~-~~~vGivt~~Dil~a  124 (132)
T d2yzia1          81 ITANVNTPLGEVLRKMAEH--RIKHILIEEE-GKIVGIFTLSDLLEA  124 (132)
T ss_dssp             CEEETTSBHHHHHHHHHHH--TCSEEEEEET-TEEEEEEEHHHHHHH
T ss_pred             cccCcchHHHHHHHHHHHc--CCCEEEEEEC-CEEEEEEEHHHHHHH
Confidence            9999999999999999999  8999998765 999999999999975

>d2rc3a1 d.37.1.1 (A:23-149) Uncharacterized protein NE2398 {Nitrosomonas europaea [TaxId: 915]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein NE2398
species: Nitrosomonas europaea [TaxId: 915]

Probab=99.82  E-value=2.6e-20  Score=142.73  Aligned_cols=121  Identities=19%  Similarity=0.369  Sum_probs=108.4

Q ss_pred             hhhhccccC-CCCccccCCCcHHHHHHHHHhcCcceEEEEcCCCcEEEEeeHHHHHHHHHhcCCchhhhhHhhhcCCCCe
Q 019775          210 KVQDVMKPQ-KELPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRRTLKASGEGIFKLTVGEMCNRSPR  288 (336)
Q Consensus       210 ~v~~im~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~it~~dl~~~~~~~~~~~~~~~i~~~~~~~~~  288 (336)
                      +|+++|... ..++++++++|+.+|+++|.+++++++||++ +++++|++|.+|++.............++.++|.+++.
T Consensus         3 tV~dim~~k~~~v~~i~~~~tl~~a~~~m~~~~~~~vpV~~-~~~~vGiit~~Di~~~~~~~~~~~~~~~v~~im~~~~~   81 (127)
T d2rc3a1           3 TVKHLLQEKGHTVVAIGPDDSVFNAMQKMAADNIGALLVMK-DEKLVGILTERDFSRKSYLLDKPVKDTQVKEIMTRQVA   81 (127)
T ss_dssp             BHHHHHHHHCCCCCEECTTSBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHHGGGSSSCGGGSBGGGTSBCSCC
T ss_pred             cHHHHHccCCCccEEECCcCcHHHHHHHHHHcCCCEEEEEE-CCeEEEEEEccchhhhhhhhcccccceeEeeeccceeE
Confidence            588888752 2478999999999999999999999999998 68999999999998877655555557889999999999


Q ss_pred             eeCCCccHHHHHHHhcCCCCCccEeEEEeCCCcEEEEEehhhHhhc
Q 019775          289 TIGPDAMAVEAMQKMESPPSPVQFLPVINRQNILIGIVTLHGLVSA  334 (336)
Q Consensus       289 ~v~~~~~l~~~~~~~~~~~~~~~~l~Vv~~~~~~iGiit~~di~~~  334 (336)
                      ++.+++++.++++.|.++  +.+++||+|+ |+++|+||..|++++
T Consensus        82 ~v~~~~~l~~a~~~m~~~--~~~~lpVvd~-~~~~GiIt~~Dil~~  124 (127)
T d2rc3a1          82 YVDLNNTNEDCMALITEM--RVRHLPVLDD-GKVIGLLSIGDLVKD  124 (127)
T ss_dssp             CBCTTCBHHHHHHHHHHH--TCSEEEEEET-TEEEEEEEHHHHHHH
T ss_pred             EeccCccHHHHHHHHHHC--CCcEEEEEEC-CEEEEEEEHHHHHHH
Confidence            999999999999999999  9999999985 999999999999986

>d2ef7a1 d.37.1.1 (A:1-127) Uncharacterized protein ST2348 {Sulfolobus tokodaii [TaxId: 111955]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein ST2348
species: Sulfolobus tokodaii [TaxId: 111955]

Probab=99.81  E-value=4.7e-20  Score=141.34  Aligned_cols=119  Identities=23%  Similarity=0.335  Sum_probs=108.0

Q ss_pred             hhhhhccccCCCCccccCCCcHHHHHHHHHhcCcceEEEEcCCCcEEEEeeHHHHHHHHHhcCCchhhhhHhhhcCCCCe
Q 019775          209 FKVQDVMKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRRTLKASGEGIFKLTVGEMCNRSPR  288 (336)
Q Consensus       209 ~~v~~im~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~it~~dl~~~~~~~~~~~~~~~i~~~~~~~~~  288 (336)
                      ..|+++|.++  +++++++.++.++.++|.+++++++||+| +|+++|+++.+|++..+.....  ...++.++|.+++.
T Consensus         4 ~~V~d~m~~~--~v~v~~~~tl~~a~~~m~~~~~~~~pV~d-~~~~~Givt~~dl~~~~~~~~~--~~~~v~~~~~~~~~   78 (127)
T d2ef7a1           4 EIVKEYMKTQ--VISVTKDAKLNDIAKVMTEKNIGSVIVVD-GNKPVGIITERDIVKAIGKGKS--LETKAEEFMTASLI   78 (127)
T ss_dssp             CBGGGTSBCS--CCEEETTCBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHHHHTTCC--TTCBGGGTSEECCC
T ss_pred             cCHHHhCCCC--CeEECCcCcHHHHHHHHHHcCCceEEeec-ccchhhhcchhHHHHHHHhhcc--ccchhhhhhhhhcc
Confidence            3789999987  66999999999999999999999999998 5789999999999998875332  35789999999999


Q ss_pred             eeCCCccHHHHHHHhcCCCCCccEeEEEeCCCcEEEEEehhhHhhc
Q 019775          289 TIGPDAMAVEAMQKMESPPSPVQFLPVINRQNILIGIVTLHGLVSA  334 (336)
Q Consensus       289 ~v~~~~~l~~~~~~~~~~~~~~~~l~Vv~~~~~~iGiit~~di~~~  334 (336)
                      ++.+++++.++++.|.++  +.+.+||+|++|+++|+||+.||+++
T Consensus        79 ~v~~~~~l~~~~~~m~~~--~~~~l~Vvd~~~~lvGiit~~Dll~~  122 (127)
T d2ef7a1          79 TIREDSPITGALALMRQF--NIRHLPVVDDKGNLKGIISIRDITRA  122 (127)
T ss_dssp             CEETTSBHHHHHHHHHHH--TCSEEEEECTTSCEEEEEEHHHHHHH
T ss_pred             ccccccchhHHHHHHHHc--CceEEEEEeCCCeEEEEEEHHHHHHH
Confidence            999999999999999999  89999999999999999999999875

>d1x94a_ c.80.1.3 (A:) Phosphoheptose isomerase GmhA1 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: SIS domain
superfamily: SIS domain
family: mono-SIS domain
domain: Phosphoheptose isomerase GmhA1
species: Vibrio cholerae [TaxId: 666]

Probab=99.81  E-value=1.1e-18  Score=142.53  Aligned_cols=159  Identities=18%  Similarity=0.262  Sum_probs=114.8

Q ss_pred             hHHHHHHHHHHHHHHHHHHhcC-ChhHHHHHHHHHHcC---CCeEEEEeccchHHHHHHHHHHHHh------cCCeeeec
Q 019775           17 ENTLLDLFKSQQDHLNYFFQHL-SLPHTLTFTQTLLKC---RGTIFFTGVGKSGFVANKISQTLIS------LGIKSGFL   86 (336)
Q Consensus        17 ~~~~~~~~~~~~~~l~~~~~~~-~~~~i~~~~~~i~~a---~~~I~i~G~G~s~~~a~~~~~~l~~------~g~~~~~~   86 (336)
                      .+.+++++....+.++++...- +.+.++++++.+.++   ++|||++|.|.|..+|++|+..+..      .+.+...+
T Consensus         3 ~d~i~~~~~e~~~~l~~~~~~~~~~~~I~~aa~~i~~~~~~~~kI~~~G~GgSa~~A~h~a~~~~~~~~~~~~~~~~~~~   82 (191)
T d1x94a_           3 QDLIRSELTEAADVLQKFLSDDHNIAQIEAAAKLIADSFKQGGKVLSCGNGGSHCDAMHFAEELTGRYRENRPGYPGIAI   82 (191)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTTTCCEEEECSSSHHHHHHHHHHHHHHHHCTTCSSCSEEEC
T ss_pred             HHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHcCCEEEEEeCCCCcccHhHHhHhccccccccccccceecc
Confidence            3556667777777776665322 235677777776433   3699999999999999999888753      35555555


Q ss_pred             CCcccccccc--------------CCCCCCcEEEEEeCCCCcHHHHHHHHHHHHcCCeEEEEeCCCCCccccccCEEEEc
Q 019775           87 NPLDALHGDI--------------GILSSDDILVMFSKSGNTEELLKVVPCAKAKGAYLVSVTSVEGNALAAVCDMNVHL  152 (336)
Q Consensus        87 ~~~~~~~~~~--------------~~~~~~dlvi~iS~sG~~~~~~~~~~~ak~~g~~vi~IT~~~~s~l~~~ad~~i~~  152 (336)
                      ++........              ...+++|++|+||.||++++++++++.||++|++||+||++.++++++++|++|.+
T Consensus        83 ~~~~~~ta~~nd~~~~~~~~~~l~~~~~~gDvli~iS~SG~s~~ii~a~~~Ak~~g~~~i~it~~~~~~l~~~~D~~I~v  162 (191)
T d1x94a_          83 SDPSHLSCVSNDFGYDYVFSRYVEAVGAKGDVLFGLSTSGNSGNILKAIEAAKAKGMKTIALTGKDGGKMAGLADVEIRV  162 (191)
T ss_dssp             ---------------CCHHHHHHHHHCCTTCEEEEEESSSCCHHHHHHHHHHHHHTCEEEEEEETTCGGGTTTSSEEEEE
T ss_pred             cchhHHHHhhcccchHHHHHHHHHHhCCCCCEEEEEecCCccccchhhHHHHHhCCCeEEEEecCCCCcccccCCEEEEe
Confidence            4322111111              11489999999999999999999999999999999999999999999999999999


Q ss_pred             CCCcccCCCCCCChhHHH--HHHHHHHHHHHHHH
Q 019775          153 PVERELCPFDLAPVTSTA--IQMVFGDTVAIAMM  184 (336)
Q Consensus       153 ~~~~~~~~~~~~~~~s~~--~~~~l~d~l~~~~~  184 (336)
                      |..+.         ...+  .++.++++|...+-
T Consensus       163 ps~~~---------~~~iee~h~~i~h~l~~~i~  187 (191)
T d1x94a_         163 PHFGY---------ADRIQEVHIKIIHIIIQLIE  187 (191)
T ss_dssp             SCCSC---------HHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCc---------cHHHHHHHHHHHHHHHHHHH
Confidence            86432         1233  56777787776543

>d3ddja1 d.37.1.1 (A:136-276) Uncharacterized protein SSO3205 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein SSO3205
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=99.80  E-value=1.2e-19  Score=141.67  Aligned_cols=122  Identities=20%  Similarity=0.230  Sum_probs=109.2

Q ss_pred             hhhhhccccCCCCccccCCCcHHHHHHHHHhcCcceEEEEcCCCcEEEEeeHHHHHHHHHhcC-----CchhhhhHhhhc
Q 019775          209 FKVQDVMKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRRTLKASG-----EGIFKLTVGEMC  283 (336)
Q Consensus       209 ~~v~~im~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~it~~dl~~~~~~~~-----~~~~~~~i~~~~  283 (336)
                      ++|+++|.++  ++++++++|+.+|+++|.+++++.+||++++++++|+++..|+.+.+....     ......++.++|
T Consensus         2 ~~V~~iMt~~--v~~v~~~~tl~~a~~~m~~~~~~~ipVv~~~~~~~g~i~~~di~~~~~~~~~~~~~~~~~~~~v~~im   79 (141)
T d3ddja1           2 FPVKVFMSTK--VQTIYKEVRLDQAVKLMLRRGFRRLPVIDDDNKVVGIVTVVNAIKQLAKAVDKLDPDYFYGKVVKDVM   79 (141)
T ss_dssp             CBHHHHSBCS--CCCEETTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHHHHHHHTCTHHHHTCBHHHHS
T ss_pred             EeeHHhCcCC--CeEEcCcCcHHHHHHHHHHcCCCeeecccccCccccccccccchhhhhccccccccccccCCCHHHHh
Confidence            5799999997  569999999999999999999999999999999999999999988764321     112346799999


Q ss_pred             CCCCeeeCCCccHHHHHHHhcCCCCCccEeEEEeCCCcEEEEEehhhHhhc
Q 019775          284 NRSPRTIGPDAMAVEAMQKMESPPSPVQFLPVINRQNILIGIVTLHGLVSA  334 (336)
Q Consensus       284 ~~~~~~v~~~~~l~~~~~~~~~~~~~~~~l~Vv~~~~~~iGiit~~di~~~  334 (336)
                      .+++.++.+++++.++++.|.++  +.+.+||+|++|+++|+||+.||+++
T Consensus        80 ~~~~~~v~~~~~~~~~~~~m~~~--~~~~l~Vvd~~~~~iGiIt~~Dil~~  128 (141)
T d3ddja1          80 VTNLVTIDELASVNRAAAEMIVK--RIGSLLILNKDNTIRGIITERDLLIA  128 (141)
T ss_dssp             BCCCCBCCTTSBHHHHHHHHHHH--TCSEEEEECTTSCEEEEEEHHHHHHH
T ss_pred             CcccccccccchhhHHHHHHHHc--CCCEEEEEccCCEEEEEEEHHHHHHH
Confidence            99999999999999999999999  99999999999999999999999874

>d2ouxa2 d.37.1.1 (A:136-262) Magnesium transporter MgtE {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Magnesium transporter MgtE
species: Enterococcus faecalis [TaxId: 1351]

Probab=99.79  E-value=8.9e-20  Score=139.63  Aligned_cols=114  Identities=17%  Similarity=0.251  Sum_probs=102.9

Q ss_pred             hhhhccccCCCCccccCCCcHHHHHHHHHhcC-----cceEEEEcCCCcEEEEeeHHHHHHHHHhcCCchhhhhHhhhcC
Q 019775          210 KVQDVMKPQKELPVCKEGDLIMDQLVELTSKG-----CGCLLVIDEEYHLIGTFTDGDLRRTLKASGEGIFKLTVGEMCN  284 (336)
Q Consensus       210 ~v~~im~~~~~~~~~~~~~~v~~~~~~~~~~~-----~~~ipVvd~~~~~~G~it~~dl~~~~~~~~~~~~~~~i~~~~~  284 (336)
                      +++.+|.++  +++++++.|+.+|++.|++++     ...+||+|++++++|+++..++....       ...++.++|.
T Consensus         2 taG~iM~~d--~i~v~~~~tv~ea~~~m~~~~~~~~~~~~~~Vvd~~~~l~G~v~~~~l~~~~-------~~~~v~~im~   72 (127)
T d2ouxa2           2 TAGAIMTTE--FVSIVANQTVRSAMYVLKNQADMAETIYYVYVVDQENHLVGVISLRDLIVND-------DDTLIADILN   72 (127)
T ss_dssp             BHHHHCBSC--CCEECSSSBHHHHHHHHHHHCSSCSCCSEEEEECTTCBEEEEEEHHHHTTSC-------TTSBHHHHSB
T ss_pred             ChhHhCCCC--cEEECCCCcHHHHHHHhHhhcccccceeeeEEEecCCeEEEEEEeecccccc-------ccEEhhhhcc
Confidence            578999998  669999999999999998774     67899999999999999998886421       2578999999


Q ss_pred             CCCeeeCCCccHHHHHHHhcCCCCCccEeEEEeCCCcEEEEEehhhHhhc
Q 019775          285 RSPRTIGPDAMAVEAMQKMESPPSPVQFLPVINRQNILIGIVTLHGLVSA  334 (336)
Q Consensus       285 ~~~~~v~~~~~l~~~~~~~~~~~~~~~~l~Vv~~~~~~iGiit~~di~~~  334 (336)
                      +++.++.+++++.++++.|.++  +.+.+||+|++|+++|+||..||++.
T Consensus        73 ~~~~~v~~~~~l~~a~~~m~~~--~~~~lPVVD~~g~lvGiIt~~Dil~~  120 (127)
T d2ouxa2          73 ERVISVHVGDDQEDVAQTIRDY--DFLAVPVTDYDDHLLGIVTVDDIIDV  120 (127)
T ss_dssp             SCCCCEETTSBHHHHHHHHHHH--TCSEEEEECTTCBEEEEEEHHHHHHH
T ss_pred             CCCccCCCCCCHHHHHHHHHHh--CCEEEEEEeCCCEEEEEEEHHHHHHH
Confidence            9999999999999999999999  99999999999999999999999863

>d1j5xa_ c.80.1.1 (A:) Hypothetical protein TM0813 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: SIS domain
superfamily: SIS domain
family: double-SIS domain
domain: Hypothetical protein TM0813
species: Thermotoga maritima [TaxId: 2336]

Probab=99.79  E-value=5.4e-19  Score=157.24  Aligned_cols=158  Identities=23%  Similarity=0.301  Sum_probs=123.1

Q ss_pred             HHHHHHHHHHHHhcC--ChhHHHHHHHHH-HcCCCeEEEEeccchHHHHHHHHHHHHhc-CCeeeecCCccccccccCCC
Q 019775           24 FKSQQDHLNYFFQHL--SLPHTLTFTQTL-LKCRGTIFFTGVGKSGFVANKISQTLISL-GIKSGFLNPLDALHGDIGIL   99 (336)
Q Consensus        24 ~~~~~~~l~~~~~~~--~~~~i~~~~~~i-~~a~~~I~i~G~G~s~~~a~~~~~~l~~~-g~~~~~~~~~~~~~~~~~~~   99 (336)
                      +.++.+.++++.++.  +.+..+.+.+.. .+. ++|+++|+|+|+.+|..+.+.|.+. |+++...++.+.........
T Consensus         7 I~eqp~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~G~GsS~~aa~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~   85 (329)
T d1j5xa_           7 ITDQKNELKKFFENFVLNLEKTEIFSEIQKNLT-DEVLFVGCGSSYNLALTISYYFERVLKIRTKAIPAGEVAFQKIPDL   85 (329)
T ss_dssp             HHHHHHTHHHHHHHTGGGTTC------C----C-CEEEEEESTHHHHHHHHHHHHHHHHHCCEEEEEEHHHHHTTCSCCC
T ss_pred             HHhHHHHHHHHHHHHhcchhhhhhhHHHHhcCC-CEEEEEEechHHHHHHHHHHHHHHhcCCCceEEecchhhccccccc
Confidence            556677777887764  223344444433 345 6999999999999999999988775 89998887776665555678


Q ss_pred             CCCcEEEEEeCCCCcHHHHHHHHHHHHcCCeEEEEeCCCCCccccccCEEEEcCCCcccCCCCCCChhHHHHHHHHHHHH
Q 019775          100 SSDDILVMFSKSGNTEELLKVVPCAKAKGAYLVSVTSVEGNALAAVCDMNVHLPVERELCPFDLAPVTSTAIQMVFGDTV  179 (336)
Q Consensus       100 ~~~dlvi~iS~sG~~~~~~~~~~~ak~~g~~vi~IT~~~~s~l~~~ad~~i~~~~~~~~~~~~~~~~~s~~~~~~l~d~l  179 (336)
                      +++|++|++|+||+|++++++++.||++|+++|+||++.+|++++.||+.+.++.+.+    ....+.+.+++++.+..+
T Consensus        86 ~~~~lvI~iS~SG~T~e~i~a~~~a~~~ga~~i~iT~~~~s~la~~~d~~i~~~~~ee----~~~~Tks~~~~l~~l~~l  161 (329)
T d1j5xa_          86 EERGLAFLFSRTGNTTEVLLANDVLKKRNHRTIGITIEEESRLAKESDLPLVFPVREE----AIVMTKSFSMILLSLMFL  161 (329)
T ss_dssp             CSSEEEEEECSSSCCHHHHHHHHHHHHTTEEEEEEESCTTSHHHHHSSEEEECCCCCC----SSSCCHHHHHHHHHHHHH
T ss_pred             CCCCeEEEEecCCCChHHHHHHHhhhhhhhhhhccccccccchhhcccceeeeccchh----hhhHHHhHHHHHHHHHHH
Confidence            8999999999999999999999999999999999999999999999999999986543    345677788888887777


Q ss_pred             HHHHHhh
Q 019775          180 AIAMMGA  186 (336)
Q Consensus       180 ~~~~~~~  186 (336)
                      ...+...
T Consensus       162 ~~~~~~~  168 (329)
T d1j5xa_         162 ADKIAGN  168 (329)
T ss_dssp             HHHHHTC
T ss_pred             HHHHhhh
Confidence            7666544

>d2yzqa1 d.37.1.1 (A:123-278) Uncharacterized protein PH1780 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH1780
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.78  E-value=3.3e-19  Score=141.62  Aligned_cols=123  Identities=23%  Similarity=0.275  Sum_probs=106.9

Q ss_pred             hhhhhhccccCCCCccccCCCcHHHHHHHHHhcCcceEEEEcCCCcEEEEeeHHHHHHHHHhcC----------------
Q 019775          208 IFKVQDVMKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRRTLKASG----------------  271 (336)
Q Consensus       208 ~~~v~~im~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~it~~dl~~~~~~~~----------------  271 (336)
                      .++++++|.++  ++++.++.++.+|++.|.+++++.+||+|++|+++|++|..|+........                
T Consensus         3 ~~~v~~~m~r~--v~~v~~~~~l~~a~~~m~~~~~~~lPVvd~~~~lvG~it~~Dl~~~~~~~~~~~~~~~~~~~~~~~~   80 (156)
T d2yzqa1           3 GVEIEPYYQRY--VSIVWEGTPLKAALKALLLSNSMALPVVDSEGNLVGIVDETDLLRDSEIVRIMKSTELAASSEEEWI   80 (156)
T ss_dssp             GCBSTTTSBSC--CCCEETTSBHHHHHHHHHTCSSSEEEEECTTSCEEEEEEGGGGGGCGGGCC----------------
T ss_pred             CCCHHHHhcCC--CeEECCcCcHHHHHHHHHHcCCCEEEEEeCCCCceeEEeeeechhhhcccccccccccccchhhhhh
Confidence            46789999988  679999999999999999999999999999999999999999865332110                


Q ss_pred             -------------CchhhhhHhhhcCCCCeeeCCCccHHHHHHHhcCCCCCccEeEEEeCCCcEEEEEehhhHhhc
Q 019775          272 -------------EGIFKLTVGEMCNRSPRTIGPDAMAVEAMQKMESPPSPVQFLPVINRQNILIGIVTLHGLVSA  334 (336)
Q Consensus       272 -------------~~~~~~~i~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~l~Vv~~~~~~iGiit~~di~~~  334 (336)
                                   ......++.++|.+++.++.+++++.++++.|.++  +.+.+||+|++|+++|+||+.||+++
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~v~~~m~~~~~tv~~~~~l~~~~~~m~~~--~~~~lpVvd~~g~lvGivt~~Dil~~  154 (156)
T d2yzqa1          81 LESHPTLLFEKFELQLPNKPVAEIMTRDVIVATPHMTVHEVALKMAKY--SIEQLPVIRGEGDLIGLIRDFDLLKV  154 (156)
T ss_dssp             ----------------CCCBGGGTCBSSCCCBCTTSBHHHHHHHHHHH--TCSEEEEEETTTEEEEEEEHHHHGGG
T ss_pred             hhhhhhhhHHHhhhcccCCEeehhcccCceEECcccccHHHHHHHHHc--CeeEEEEEeCCCEEEEEEEHHHHHHH
Confidence                         01123578899999999999999999999999999  99999999999999999999999986

>d2ooxe2 d.37.1.1 (E:182-334) Uncharacterized protein C1556.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein C1556.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=99.77  E-value=2e-18  Score=136.51  Aligned_cols=123  Identities=15%  Similarity=0.201  Sum_probs=105.0

Q ss_pred             hhhhcccc-CCCCccccCCCcHHHHHHHHHhcCcceEEEEcCCCcEEEEeeHHHHHHHHHhcCCchhhhhHhhhcC----
Q 019775          210 KVQDVMKP-QKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRRTLKASGEGIFKLTVGEMCN----  284 (336)
Q Consensus       210 ~v~~im~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~it~~dl~~~~~~~~~~~~~~~i~~~~~----  284 (336)
                      ++++++.. ...++++.++.|+.+|+++|.+++++++||+|++|+++|+++..|++..+..........++.++|.    
T Consensus         2 pl~~~~ig~~~~vv~v~~~~~v~~a~~~m~~~~~~~lpVvd~~~~~vG~it~~Dl~~~~~~~~~~~~~~~v~~~~~~~~~   81 (153)
T d2ooxe2           2 PLNQMTIGTWSNLATASMETKVYDVIKMLAEKNISAVPIVNSEGTLLNVYESVDVMHLIQDGDYSNLDLSVGEALLKRPA   81 (153)
T ss_dssp             BGGGTCCSBCSSCCCBCTTSBHHHHHHHHHHTTCSEEEEECGGGBEEEEEEHHHHHHHHGGGCGGGGGSBHHHHHHTSCC
T ss_pred             CHHHcCCCCCCCCeEEeCcCcHHHHHHHHHHcCcceEeeecccceEEEEEEeeeeeehhccccccccccchhhheeeeec
Confidence            56777664 3347899999999999999999999999999999999999999999998876544334455666553    


Q ss_pred             --CCCeeeCCCccHHHHHHHhcCCCCCccEeEEEeCCCcEEEEEehhhHhhc
Q 019775          285 --RSPRTIGPDAMAVEAMQKMESPPSPVQFLPVINRQNILIGIVTLHGLVSA  334 (336)
Q Consensus       285 --~~~~~v~~~~~l~~~~~~~~~~~~~~~~l~Vv~~~~~~iGiit~~di~~~  334 (336)
                        +++.++.+++++.++++.|.++  +.+.+||+|++|+++|+||+.||+++
T Consensus        82 ~~~~~~~v~~~~~l~~~~~~m~~~--~~~~l~Vvd~~~~lvGivT~~Dil~~  131 (153)
T d2ooxe2          82 NFDGVHTCRATDRLDGIFDAIKHS--RVHRLFVVDENLKLEGILSLADILNY  131 (153)
T ss_dssp             CSSCCCEECTTCBHHHHHHHHHHS--CCSEEEEECTTCBEEEEEEHHHHHHH
T ss_pred             ccCCCeEECCCCcHHHHHHhhhhc--eeeEEEEEcCCCEEEEEEEHHHHHHH
Confidence              4556799999999999999999  99999999999999999999999874

>d2yvxa2 d.37.1.1 (A:132-275) Magnesium transporter MgtE {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Magnesium transporter MgtE
species: Thermus thermophilus [TaxId: 274]

Probab=99.77  E-value=9.5e-20  Score=142.63  Aligned_cols=114  Identities=24%  Similarity=0.308  Sum_probs=103.0

Q ss_pred             hhhhccccCCCCccccCCCcHHHHHHHHHhcC-----cceEEEEcCCCcEEEEeeHHHHHHHHHhcCCchhhhhHhhhcC
Q 019775          210 KVQDVMKPQKELPVCKEGDLIMDQLVELTSKG-----CGCLLVIDEEYHLIGTFTDGDLRRTLKASGEGIFKLTVGEMCN  284 (336)
Q Consensus       210 ~v~~im~~~~~~~~~~~~~~v~~~~~~~~~~~-----~~~ipVvd~~~~~~G~it~~dl~~~~~~~~~~~~~~~i~~~~~  284 (336)
                      +++.+|.++  +++++++.|+.+|++.|++++     ...+||+|++|+++|+++.+|+....       ...++.++|.
T Consensus         2 taG~iM~~~--~itv~~~~tv~ea~~~m~~~~~~~~~~~~~~Vvd~~~~l~G~v~~~dl~~~~-------~~~~v~~im~   72 (144)
T d2yvxa2           2 EAGGLMTPE--YVAVREGMTVEEVLRFLRRAAPDAETIYYIYVVDEKGRLKGVLSLRDLIVAD-------PRTRVAEIMN   72 (144)
T ss_dssp             SSGGGCBSC--CCEECSSCBHHHHHHHSSSSCTTSSCSSBCEEBCTTCBBCCBCBHHHHTTSC-------TTCBSTTTSB
T ss_pred             CcccccCCC--CEEECCCCcHHHHHHHHHHhcccccceeeeEEecCCCCEecccchhhhhhcc-------cccchHHhcc
Confidence            578999997  569999999999999998774     67899999999999999999986531       2568899999


Q ss_pred             CCCeeeCCCccHHHHHHHhcCCCCCccEeEEEeCCCcEEEEEehhhHhhc
Q 019775          285 RSPRTIGPDAMAVEAMQKMESPPSPVQFLPVINRQNILIGIVTLHGLVSA  334 (336)
Q Consensus       285 ~~~~~v~~~~~l~~~~~~~~~~~~~~~~l~Vv~~~~~~iGiit~~di~~~  334 (336)
                      +++.++.+++++.+|++.|.++  +.+.+||+|++|+++|+||..||+++
T Consensus        73 ~~~~~v~~~~~~~~a~~~m~~~--~~~~lPVVd~~g~lvGiIt~~Dil~~  120 (144)
T d2yvxa2          73 PKVVYVRTDTDQEEVARLMADY--DFTVLPVVDEEGRLVGIVTVDDVLDV  120 (144)
T ss_dssp             SSCCCEESSCCHHHHHHHHHHS--CCSEEEEECSSCBEEEEEEHHHHHHH
T ss_pred             cCCccCCCCChHHHHHHHHHHc--CCCEEEEEeECCEEEEEEEHHHHHHH
Confidence            9999999999999999999999  99999999999999999999999864

>d2riha1 d.37.1.1 (A:2-132) Uncharacterized protein PAE2072 {Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PAE2072
species: Pyrobaculum aerophilum [TaxId: 13773]

Probab=99.77  E-value=7.1e-19  Score=135.41  Aligned_cols=119  Identities=17%  Similarity=0.225  Sum_probs=102.1

Q ss_pred             hhhhhccccCCCCccccCCCcHHHHHHHHHhcCcceEEEE--cCCCcEEEEeeHHHHHHHHHhcCCchhhhhHhhhcCCC
Q 019775          209 FKVQDVMKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVI--DEEYHLIGTFTDGDLRRTLKASGEGIFKLTVGEMCNRS  286 (336)
Q Consensus       209 ~~v~~im~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ipVv--d~~~~~~G~it~~dl~~~~~~~~~~~~~~~i~~~~~~~  286 (336)
                      ++|+++|.++  ++++++++|+.+++++|.+++++++||+  |++++++|+++..++++.+.....   .......+.++
T Consensus         1 ~~V~dim~~~--~v~v~~~~tl~ea~~~m~~~~~~~~~Vv~~d~~~~~iGi~~~~dl~~~~~~~~~---~~~~~~~~~~~   75 (131)
T d2riha1           1 IRTSELLKRP--PVSLPETATIREVATELAKNRVGLAVLTARDNPKRPVAVVSERDILRAVAQRLD---LDGPAMPIANS   75 (131)
T ss_dssp             CBGGGGCCSC--CEEEETTCBHHHHHHHHHHHTCSEEEEEETTEEEEEEEEEEHHHHHHHHHTTCC---TTSBSGGGCBC
T ss_pred             CCHHHhccCC--CEEECCCCcHHHHHHHHHHhCCCcEEEEEEcCCCEEEEEEeeeccccccccccc---ccccccccccc
Confidence            4789999987  4589999999999999999999999999  455899999999999998765332   22233334556


Q ss_pred             CeeeCCCccHHHHHHHhcCCCCCccEeEEEeCCCcEEEEEehhhHhhc
Q 019775          287 PRTIGPDAMAVEAMQKMESPPSPVQFLPVINRQNILIGIVTLHGLVSA  334 (336)
Q Consensus       287 ~~~v~~~~~l~~~~~~~~~~~~~~~~l~Vv~~~~~~iGiit~~di~~~  334 (336)
                      +.++.+++++.++++.|.++  +.+.+||+|++|+++|+||..||+++
T Consensus        76 ~~~v~~~~~~~~a~~~m~~~--~i~~lpVvd~~g~l~Giit~~Dll~~  121 (131)
T d2riha1          76 PITVLDTDPVHVAAEKMRRH--NIRHVVVVNKNGELVGVLSIRDLCFE  121 (131)
T ss_dssp             CCEEETTSBHHHHHHHHHHH--TCSEEEEECTTSCEEEEEEHHHHHSC
T ss_pred             ceeEeeecchHHHHHHHHHC--CeEEEEEEcCCCeEEEEEEHHHHHHH
Confidence            77899999999999999999  99999999999999999999999975

>d1zfja4 d.37.1.1 (A:95-220) Type II inosine monophosphate dehydrogenase CBS domains {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Type II inosine monophosphate dehydrogenase CBS domains
species: Streptococcus pyogenes [TaxId: 1314]

Probab=99.76  E-value=1.3e-18  Score=132.89  Aligned_cols=111  Identities=12%  Similarity=0.141  Sum_probs=94.6

Q ss_pred             cccCCCCccccCCCcHHHHHHHHHhcCcceEEEEcC--CCcEEEEeeHHHHHHHHHhcCCchhhhhHhhhcCCCCeeeCC
Q 019775          215 MKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVIDE--EYHLIGTFTDGDLRRTLKASGEGIFKLTVGEMCNRSPRTIGP  292 (336)
Q Consensus       215 m~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~--~~~~~G~it~~dl~~~~~~~~~~~~~~~i~~~~~~~~~~v~~  292 (336)
                      |..++  +++++++|+.+|+++|.+++++++||+|+  +++++|+||.+|+.......     ......++..++.++.+
T Consensus         3 mi~dp--vtv~~~~tv~~a~~~m~~~~~~~~pVvD~~~~~~lvGivt~~Di~~~~~~~-----~~~~~~~~~~~~~~~~~   75 (126)
T d1zfja4           3 VIIDP--FFLTPEHKVSEAEELMQRYRISGVPIVETLANRKLVGIITNRDMRFISDYN-----APISEHMTSEHLVTAAV   75 (126)
T ss_dssp             TSSSC--CCBCSSSBHHHHHHHHHHTTCSEEEEESCTTTCBEEEEEEHHHHHHCSCSS-----SBTTTSCCCSCCCCEET
T ss_pred             CEeCc--eEECCCCCHHHHHHHHHHhCCCcEEEEeeccCCeEEEEeEHHHHHHhhccC-----CceeeeeeccceeecCC
Confidence            55553  48999999999999999999999999996  68999999999998653321     22234455667788999


Q ss_pred             CccHHHHHHHhcCCCCCccEeEEEeCCCcEEEEEehhhHhhc
Q 019775          293 DAMAVEAMQKMESPPSPVQFLPVINRQNILIGIVTLHGLVSA  334 (336)
Q Consensus       293 ~~~l~~~~~~~~~~~~~~~~l~Vv~~~~~~iGiit~~di~~~  334 (336)
                      ++++.++++.|.++  +.+.+||+|++|+++|+||+.||+++
T Consensus        76 ~~~l~~a~~~m~~~--~~~~lpVVd~~g~lvGiiT~~Dil~~  115 (126)
T d1zfja4          76 GTDLETAERILHEH--RIEKLPLVDNSGRLSGLITIKDIEKV  115 (126)
T ss_dssp             TCCHHHHHHHHHHT--TCSEEEEECTTSBEEEEEEHHHHHHH
T ss_pred             CCCHHHHHHHHHhc--CCcEEEEEcCCCeEEEEEEHHHHHHH
Confidence            99999999999999  99999999999999999999999875

>d2nyca1 d.37.1.1 (A:181-320) Nuclear protein SNF4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Nuclear protein SNF4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.75  E-value=5e-18  Score=132.14  Aligned_cols=124  Identities=18%  Similarity=0.219  Sum_probs=96.9

Q ss_pred             hhhhhc-cccCCCCccccCCCcHHHHHHHHHhcCcceEEEEcCCCcEEEEeeHHHHHHHHHhcCCchhhh------hHhh
Q 019775          209 FKVQDV-MKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRRTLKASGEGIFKL------TVGE  281 (336)
Q Consensus       209 ~~v~~i-m~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~it~~dl~~~~~~~~~~~~~~------~i~~  281 (336)
                      .+++++ +.+...+.+++++.++.+|+++|.+++++.+||+|++|+++|++|..|+...+..........      ....
T Consensus         6 ~~i~~l~~~~~~~v~tv~~~~~v~~a~~~m~~~~~~~ipVvd~~~~~vG~it~~Di~~~~~~~~~~~~~~~~~~~~~~~~   85 (140)
T d2nyca1           6 IPIGDLNIITQDNMKSCQMTTPVIDVIQMLTQGRVSSVPIIDENGYLINVYEAYDVLGLIKGGIYNDLSLSVGEALMRRS   85 (140)
T ss_dssp             SBGGGSSCCBCSSCCCBCTTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHHHHHHTC----CCSBHHHHHHHCC
T ss_pred             CcHHHhCCccCCCCEEEcCcCcHHHHHHHHHHcCCcEEEEEecCCeEcceehhhHHHHHHhhccccccccchhhhhhhhh
Confidence            345554 222334789999999999999999999999999999999999999999999886543221111      2223


Q ss_pred             hcCCCCeeeCCCccHHHHHHHhcCCCCCccEeEEEeCCCcEEEEEehhhHhhc
Q 019775          282 MCNRSPRTIGPDAMAVEAMQKMESPPSPVQFLPVINRQNILIGIVTLHGLVSA  334 (336)
Q Consensus       282 ~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~l~Vv~~~~~~iGiit~~di~~~  334 (336)
                      .+..++.++.+++++.++++.|.++  +.+.+||+|++|+++|+||.+||+++
T Consensus        86 ~~~~~~~~v~~~~~l~~~~~~~~~~--~~~~l~VVd~~~~l~GiIt~~Dii~~  136 (140)
T d2nyca1          86 DDFEGVYTCTKNDKLSTIMDNIRKA--RVHRFFVVDDVGRLVGVLTLSDILKY  136 (140)
T ss_dssp             ------CEECTTSBHHHHHHHHHHH--TCSEEEEECTTSBEEEEEEHHHHHHH
T ss_pred             hcccccEEECCCCcHHHHHHHHHhc--CeeEEEEEeCCCeEEEEEEHHHHHHH
Confidence            3445678899999999999999999  99999999999999999999999875

>d3ddja2 d.37.1.1 (A:1-135) Uncharacterized protein SSO3205 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein SSO3205
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=99.75  E-value=1.1e-18  Score=134.99  Aligned_cols=120  Identities=19%  Similarity=0.287  Sum_probs=105.6

Q ss_pred             hhhhhccccCCCCccccCCCcHHHHHHHHHhcCcceEEEEcCCCcEEEEeeHHHHHHHHHhcCC---------chhhhhH
Q 019775          209 FKVQDVMKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRRTLKASGE---------GIFKLTV  279 (336)
Q Consensus       209 ~~v~~im~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~it~~dl~~~~~~~~~---------~~~~~~i  279 (336)
                      |+|+++|.+++  +++++++++.+|++.|.+++++.+||+|  ++++|+++..++...+.....         .....++
T Consensus         1 m~V~~lM~~~~--~~v~~~~tl~~a~~~m~~~~~~~l~V~d--~~lvg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v   76 (135)
T d3ddja2           1 MNIETLMIKNP--PILSKEDRLGSAFKKINEGGIGRIIVAN--EKIEGLLTTRDLLSTVESYCKDSCSQGDLYHISTTPI   76 (135)
T ss_dssp             SSGGGTCEESC--CEECTTSBHHHHHHHTTGGGCCEEEEES--SSEEEEEEHHHHHGGGTTCC---CCHHHHHHHHTSBG
T ss_pred             CEeeEEeeCCC--eEECCCCcHHHHHHHHHHhCCeEEEEEe--cceeceeeccchhhhhccccccchhhhhccccccCCH
Confidence            57999999974  4899999999999999999999999997  379999999999987643221         1224678


Q ss_pred             hhhcCCCCeeeCCCccHHHHHHHhcCCCCCccEeEEEeCCCcEEEEEehhhHhhc
Q 019775          280 GEMCNRSPRTIGPDAMAVEAMQKMESPPSPVQFLPVINRQNILIGIVTLHGLVSA  334 (336)
Q Consensus       280 ~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~l~Vv~~~~~~iGiit~~di~~~  334 (336)
                      .++|.+++.++++++++.++++.|.++  +.+.+||+|++|+++|+||+.||++.
T Consensus        77 ~~im~~~~~~v~~~~~l~~a~~~m~~~--~i~~lpVvd~~g~lvGiit~~Dil~~  129 (135)
T d3ddja2          77 IDYMTPNPVTVYNTSDEFTAINIMVTR--NFGSLPVVDINDKPVGIVTEREFLLL  129 (135)
T ss_dssp             GGTSEESCCCEETTSCHHHHHHHHHHH--TCSEEEEECTTSCEEEEEEHHHHGGG
T ss_pred             HHHhCCccceEEeccccchhhhhhhhc--ceeEEEEEeCCCEEEEEEEHHHHHHH
Confidence            999999999999999999999999999  99999999999999999999999975

>d2d4za3 d.37.1.1 (A:527-606,A:691-770) Chloride channel protein, CBS tandem {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Chloride channel protein, CBS tandem
species: Marbled electric ray (Torpedo marmorata) [TaxId: 7788]

Probab=99.72  E-value=9.8e-18  Score=133.35  Aligned_cols=122  Identities=15%  Similarity=0.121  Sum_probs=104.2

Q ss_pred             hhhhhhccccCCCCccccCCCcHHHHHHHHHhcCcceEEEEcC--CCcEEEEeeHHHHHHHHHhcCC-------------
Q 019775          208 IFKVQDVMKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVIDE--EYHLIGTFTDGDLRRTLKASGE-------------  272 (336)
Q Consensus       208 ~~~v~~im~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~--~~~~~G~it~~dl~~~~~~~~~-------------  272 (336)
                      .++|+++|.++  ++++++++|+.+++++|.+++++.+||+|+  ++.++|+++..|++..+.....             
T Consensus        10 ~~~V~diM~~~--~~~v~~~~tv~e~~~~l~~~~~~~~PVvd~~~~~~lvg~is~~dl~~~l~~~~~~~~~~~~~~~~~~   87 (160)
T d2d4za3          10 NIQVGDIMVRD--VTSIASTSTYGDLLHVLRQTKLKFFPFVDTPDTNTLLGSIDRTEVEGLLQRRISAYRRQPFEEMLTL   87 (160)
T ss_dssp             SCBTTSSSBSS--CCCEETTCBHHHHHHHHHHCCCSEEEEESCTTTCBEEEEEEHHHHHHHHHHHHHTTSSSCCCSCCBH
T ss_pred             ceEHHHhcCCC--CeEECCCCcHHHHHHHHHhcCCCccccccccccccccccchHHHHHHHHhhccccccccchhhcccc
Confidence            56899999987  669999999999999999999999999994  4689999999999987753210             


Q ss_pred             -----------chhhhhHhhhcCCCCeeeCCCccHHHHHHHhcCCCCCccEeEEEeCCCcEEEEEehhhHhhc
Q 019775          273 -----------GIFKLTVGEMCNRSPRTIGPDAMAVEAMQKMESPPSPVQFLPVINRQNILIGIVTLHGLVSA  334 (336)
Q Consensus       273 -----------~~~~~~i~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~l~Vv~~~~~~iGiit~~di~~~  334 (336)
                                 ......+.++|.+++.++.+++++.++++.|.++  +.+.+||+++ |+++|+||+.||+++
T Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~~~~~l~~~~~~m~~~--~v~~l~V~d~-g~lvGiIt~~Di~k~  157 (160)
T d2d4za3          88 EEIYRWEQREKNVVVNFETCRIDQSPFQLVEGTSLQKTHTLFSLL--GLDRAYVTSM-GKLVGVVALAEIQAA  157 (160)
T ss_dssp             HHHHHHHHHHTTCBCCTTSSCEECCSCCBCTTCBHHHHHHHHHHH--TCSEEEEEET-TEEEEEEEHHHHHHH
T ss_pred             chhhhhhhhhcccccceeeecccCCCEEEcCCCCHHHHHHHHHHc--CCeEEEEEEC-CEEEEEEEHHHHHHH
Confidence                       0011234567888999999999999999999999  9999999986 999999999999975

>d2v8qe1 d.37.1.1 (E:182-326) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.71  E-value=1.6e-17  Score=129.94  Aligned_cols=123  Identities=11%  Similarity=0.156  Sum_probs=101.8

Q ss_pred             hhhhcccc-CCCCccccCCCcHHHHHHHHHhcCcceEEEEcCCCcEEEEeeHHHHHHHHHhcCCchhhh------hHhhh
Q 019775          210 KVQDVMKP-QKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRRTLKASGEGIFKL------TVGEM  282 (336)
Q Consensus       210 ~v~~im~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~it~~dl~~~~~~~~~~~~~~------~i~~~  282 (336)
                      ++++++.. ...++++++++|+.+|++.|.+++++.+||+|++|+++|++|..|+...+..........      .....
T Consensus        10 ~l~~l~i~~~~~v~~v~~~~tv~eal~~m~~~~~~~lpVvd~~~~~~Gvit~~di~~~l~~~~~~~~~~~v~~~~~~~~~   89 (145)
T d2v8qe1          10 SLEELQIGTYANIAMVRTTTPVYVALGIFVQHRVSALPVVDEKGRVVDIYSKFDVINLAAEKTYNNLDVSVTKALQHRSH   89 (145)
T ss_dssp             BHHHHTCSBCSSCCCEETTCBHHHHHHHHHHHCCSEEEEECTTSBEEEEEEGGGTGGGGGSSCCCCCSSBHHHHGGGCCS
T ss_pred             CHHHHcCCCCCCceEEcCcCcHHHHHHHHHHcCCCcccccccCCceEEEEEcchhhhhhhcccccchhhhhhhccchhhh
Confidence            45666543 123679999999999999999999999999999999999999999998776543221222      23344


Q ss_pred             cCCCCeeeCCCccHHHHHHHhcCCCCCccEeEEEeCCCcEEEEEehhhHhhc
Q 019775          283 CNRSPRTIGPDAMAVEAMQKMESPPSPVQFLPVINRQNILIGIVTLHGLVSA  334 (336)
Q Consensus       283 ~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~l~Vv~~~~~~iGiit~~di~~~  334 (336)
                      |.+++.++.+++++.++++.|.++  +.+.+||+|++|+++|+||..||+++
T Consensus        90 ~~~~~~~v~~~~~l~~~~~~m~~~--~~~~l~Vvd~~g~l~GiVt~~dii~~  139 (145)
T d2v8qe1          90 YFEGVLKCYLHETLEAIINRLVEA--EVHRLVVVDEHDVVKGIVSLSDILQA  139 (145)
T ss_dssp             CCCSCCEECTTSBHHHHHHHHHHH--TCSEEEEECTTSBEEEEEEHHHHHHH
T ss_pred             ccCCCeEECCCCcHHHHHHHHHHc--CceEEEEEccCCEEEEEEEHHHHHHH
Confidence            566788899999999999999999  99999999999999999999999875

>d1nria_ c.80.1.3 (A:) Hypothetical protein HI0754 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: SIS domain
superfamily: SIS domain
family: mono-SIS domain
domain: Hypothetical protein HI0754
species: Haemophilus influenzae [TaxId: 727]

Probab=99.70  E-value=5e-16  Score=130.73  Aligned_cols=179  Identities=17%  Similarity=0.142  Sum_probs=130.9

Q ss_pred             CcchHHHHHHHHHHHHHHHHHHhcCCh--hHHHHHHHHHHcCCCeEEEEeccchHHHHHHHHHHHHhc-CC---eeeec-
Q 019775           14 KVSENTLLDLFKSQQDHLNYFFQHLSL--PHTLTFTQTLLKCRGTIFFTGVGKSGFVANKISQTLISL-GI---KSGFL-   86 (336)
Q Consensus        14 ~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~i~~~~~~i~~a~~~I~i~G~G~s~~~a~~~~~~l~~~-g~---~~~~~-   86 (336)
                      -+..++.+.+.+........+.+.++.  ..++.+++.+.+. +|||++|.|+|..+|...+..+... +.   .+..+ 
T Consensus        19 ~s~~~il~~i~~ed~~v~~av~~~l~~I~~av~~i~~~l~~g-Grl~y~G~GtSgrla~~dA~E~~ptf~~~~~~v~~~i   97 (248)
T d1nria_          19 QSTLEIVRLMNEEDKLVPLAIESCLPQISLAVEQIVQAFQQG-GRLIYIGAGTSGRLGVLDASECPPTFGVSTEMVKGII   97 (248)
T ss_dssp             SCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHTT-CCEEEEESHHHHHHHHHHHHHHHHHHCCCTTSEEEEE
T ss_pred             CCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CeEEEEecCccchHHHHHHHHcCCccCCCchheeeee
Confidence            345566666666655555555544431  3445555566666 6999999999998887777766532 21   11111 


Q ss_pred             CCcc-ccc--------------c--ccCCCCCCcEEEEEeCCCCcHHHHHHHHHHHHcCCeEEEEeCCCCCccccccCEE
Q 019775           87 NPLD-ALH--------------G--DIGILSSDDILVMFSKSGNTEELLKVVPCAKAKGAYLVSVTSVEGNALAAVCDMN  149 (336)
Q Consensus        87 ~~~~-~~~--------------~--~~~~~~~~dlvi~iS~sG~~~~~~~~~~~ak~~g~~vi~IT~~~~s~l~~~ad~~  149 (336)
                      ..++ ...              .  ....++++|++|+||.||+++.++.++++||++|+++++||+++++++.+++|+.
T Consensus        98 agg~~al~~~~e~~ed~~~~~~~~l~~~~~~~~DvvIgISaSG~Tp~vl~al~~Ak~~Ga~ti~i~~n~~s~l~~~ad~~  177 (248)
T d1nria_          98 AGGECAIRHPVEGAEDNTKAVLNDLQSIHFSKNDVLVGIAASGRTPYVIAGLQYAKSLGALTISIASNPKSEMAEIADIA  177 (248)
T ss_dssp             TTCTHHHHSCCTTGGGCTTHHHHHHHHTTCCTTSEEEEECTTSCCHHHHHHHHHHHHHTCEEEEEESSTTCHHHHHSSEE
T ss_pred             ccChHHHHhhhhhccccHHHHHHHHHhcCCCcccEEEEEecCCCccchHHHHHHHHhcCcceEEEecCCchhccccccee
Confidence            1110 000              0  0112689999999999999999999999999999999999999999999999999


Q ss_pred             EEcCCCcccCCCCCCChhHHHHHHHHHHHHHHHHHhhcCCChHHH
Q 019775          150 VHLPVERELCPFDLAPVTSTAIQMVFGDTVAIAMMGARNLTRDEY  194 (336)
Q Consensus       150 i~~~~~~~~~~~~~~~~~s~~~~~~l~d~l~~~~~~~~~~~~~~~  194 (336)
                      |...++.+. ..+..++.+-+++..++++|....+-+.+..++.+
T Consensus       178 I~~~~GpEv-~~gstr~kagtaqK~iLn~isT~~mi~lGkv~~n~  221 (248)
T d1nria_         178 IETIVGPEI-LTGSSRLKSGTAQKMVLNMLTTASMILLGKCYENL  221 (248)
T ss_dssp             EECCCCSCS-STTCTTTHHHHHHHHHHHHHHHHHHHHTTSCBTTB
T ss_pred             eeeccChHH-hhcccchhhhHHHHHHHHHHHHHHHHHhhhhhcCe
Confidence            999998763 33557899999999999999999999887655544

>d1x92a_ c.80.1.3 (A:) Phosphoheptose isomerase GmhA1 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: SIS domain
superfamily: SIS domain
family: mono-SIS domain
domain: Phosphoheptose isomerase GmhA1
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.70  E-value=2.6e-16  Score=127.85  Aligned_cols=158  Identities=16%  Similarity=0.271  Sum_probs=119.8

Q ss_pred             hHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHcC---CCeEEEEeccchHHHHHHHHHHHHhc------CCeeeecC
Q 019775           17 ENTLLDLFKSQQDHLNYFFQHLSLPHTLTFTQTLLKC---RGTIFFTGVGKSGFVANKISQTLISL------GIKSGFLN   87 (336)
Q Consensus        17 ~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~i~~a---~~~I~i~G~G~s~~~a~~~~~~l~~~------g~~~~~~~   87 (336)
                      .+.++++++.+++......+.+. +.++++++.+.++   ++|||++|.|.|...|.+|+..|.+.      +.+++.+.
T Consensus         3 ~~~i~~~f~~~ie~~~~~~~~~~-~~i~~a~~~i~~~~~~~~kif~~GnGgSas~A~h~a~dl~~~~~~~r~~~~~i~l~   81 (194)
T d1x92a_           3 QHRIRQLFQASIETKQQALEVLP-PYIEQASLVMVNALLNEGKILSCGNGGSAGDAQHFSSELLNRFERERPSLPAVALT   81 (194)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHSH-HHHHHHHHHHHHHHHTTCCEEEECSTHHHHHHHHHHHHHHTCSSSCCCCCCEEETT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhH-HHHHHHHHHHHHHHHcCCEEEEECCCccHHHHHHHHHHhhhhccccccccceeecc
Confidence            45677788888888888888776 6788888887644   36999999999999999999999863      55555553


Q ss_pred             Cccccc---------------cccCCCCCCcEEEEEeCCCCcHHHHHHHHHHHHcCCeEEEEeCCCCCccccc---cCEE
Q 019775           88 PLDALH---------------GDIGILSSDDILVMFSKSGNTEELLKVVPCAKAKGAYLVSVTSVEGNALAAV---CDMN  149 (336)
Q Consensus        88 ~~~~~~---------------~~~~~~~~~dlvi~iS~sG~~~~~~~~~~~ak~~g~~vi~IT~~~~s~l~~~---ad~~  149 (336)
                      +.....               ......+++|++|+||.||++++++++++.||++|++++++|+..++.+.++   +|++
T Consensus        82 ~~~s~~ta~~Nd~g~~~~f~~ql~~~~~~gDvli~iS~SG~S~nvi~a~~~Ak~~g~~~i~ltG~~gg~~~~l~~~~Di~  161 (194)
T d1x92a_          82 TDSSTITSIANDYSYNEVFSKQIRALGQPGDVLLAISTSGNSANVIQAIQAAHDREMLVVALTGRDGGGMASLLLPEDVE  161 (194)
T ss_dssp             CCHHHHHHHHHHTCGGGTTHHHHHHHCCTTCEEEEECSSSCCHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHCCTTCEE
T ss_pred             cchhHHHhhccccCHHHHHHHHHHHhcCCCcEEEEEecCCCcchhHHHHHHHHhcCceEEEEEecCCchHhhhccCCCEE
Confidence            211110               0111357999999999999999999999999999999999999999887776   7999


Q ss_pred             EEcCCCcccCCCCCCChhHHHHHHHHHHHHHHHH
Q 019775          150 VHLPVERELCPFDLAPVTSTAIQMVFGDTVAIAM  183 (336)
Q Consensus       150 i~~~~~~~~~~~~~~~~~s~~~~~~l~d~l~~~~  183 (336)
                      |.+|+...        -...-.+++++++|...+
T Consensus       162 i~ips~~~--------~~vee~hl~i~H~l~~~i  187 (194)
T d1x92a_         162 IRVPSKIT--------ARIQEVHLLAIHCLCDLI  187 (194)
T ss_dssp             EECSCSCH--------HHHHHHHHHHHHHHHHHH
T ss_pred             EEeCCCCh--------HHHHHHHHHHHHHHHHHH
Confidence            99998643        122234455555555443

>d1o50a3 d.37.1.1 (A:1-145) Hypothetical protein TM0935 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein TM0935
species: Thermotoga maritima [TaxId: 2336]

Probab=99.70  E-value=3.7e-17  Score=127.91  Aligned_cols=120  Identities=15%  Similarity=0.185  Sum_probs=100.8

Q ss_pred             hhhhccccCCCCccccCCCcHHHHHHHHHhcCcceEEEEcCCCcEEEEeeHHHHHHHHHhcC--------------Cchh
Q 019775          210 KVQDVMKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRRTLKASG--------------EGIF  275 (336)
Q Consensus       210 ~v~~im~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~it~~dl~~~~~~~~--------------~~~~  275 (336)
                      .+.++|...+  +++.+++++.++++.|.+++++.+||+|++|+++|+++..||...+....              ....
T Consensus         5 ~v~~~m~~~p--~~v~~~~~v~~a~~~m~~~~~~~ipVvd~~~~~vGiis~~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (145)
T d1o50a3           5 DVCKLISLKP--TVVEEDTPIEEIVDRILEDPVTRTVYVARDNKLVGMIPVMHLLKVSGFHFFGFIPKEELIRSSMKRLI   82 (145)
T ss_dssp             HHTTSSCCCC--EEECTTCBHHHHHHHHHHSTTCCEEEEEETTEEEEEEEHHHHHHHHHHHHHCCCC-------CCCCCS
T ss_pred             EhHHhCCCCC--EEECCcCcHHHHHHHHHHcCCceEEEeccCcceeeeeccchhhhhhhcccccccchhHHHHhhhhhcc
Confidence            4566788774  58999999999999999999999999998899999999999998664311              0111


Q ss_pred             hhhHhhhcCCCCeeeCCCccHHHHHHHhcCCCCCccEeEEEeCCCcEEEEEehhhHhhc
Q 019775          276 KLTVGEMCNRSPRTIGPDAMAVEAMQKMESPPSPVQFLPVINRQNILIGIVTLHGLVSA  334 (336)
Q Consensus       276 ~~~i~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~l~Vv~~~~~~iGiit~~di~~~  334 (336)
                      ..++.++| .++.++.+++++.++++.|.++  +.+.+||+|++|+++|+||..||+++
T Consensus        83 ~~~~~~~~-~~~~~i~~~~~l~~a~~~m~~~--~i~~lpVVd~~g~i~Gvit~~dil~~  138 (145)
T d1o50a3          83 AKNASEIM-LDPVYVHMDTPLEEALKLMIDN--NIQEMPVVDEKGEIVGDLNSLEILLA  138 (145)
T ss_dssp             SCBHHHHC-BCCCCBCTTSBHHHHHHHHHHH--TCSEEEEECTTSCEEEEEEHHHHHHH
T ss_pred             ccCHHHHc-CCCEEEcCCCCHHHHHHHHHHc--CceEEEEEeCCCeEEEEEEHHHHHHH
Confidence            23456665 4467899999999999999999  99999999999999999999999975

>d1tk9a_ c.80.1.3 (A:) Phosphoheptose isomerase GmhA1 {Campylobacter jejuni [TaxId: 197]}

class: Alpha and beta proteins (a/b)
fold: SIS domain
superfamily: SIS domain
family: mono-SIS domain
domain: Phosphoheptose isomerase GmhA1
species: Campylobacter jejuni [TaxId: 197]

Probab=99.70  E-value=3.1e-16  Score=126.90  Aligned_cols=158  Identities=16%  Similarity=0.233  Sum_probs=116.4

Q ss_pred             hHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHcC---CCeEEEEeccchHHHHHHHHHHHHhc------CCeeeecC
Q 019775           17 ENTLLDLFKSQQDHLNYFFQHLSLPHTLTFTQTLLKC---RGTIFFTGVGKSGFVANKISQTLISL------GIKSGFLN   87 (336)
Q Consensus        17 ~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~i~~a---~~~I~i~G~G~s~~~a~~~~~~l~~~------g~~~~~~~   87 (336)
                      .+.++++++...+.++.. + ...+.++++++.+.++   ++|||++|.|.|...|.+++..|...      +.+++.+.
T Consensus         4 ~~~i~~~~~e~~~~l~~~-~-~~~~~I~~~~~~i~~~l~~ggkI~~~GnGgSa~~A~h~a~el~~~~~~~r~~l~~i~l~   81 (188)
T d1tk9a_           4 INLVEKEWQEHQKIVQAS-E-ILKGQIAKVGELLCECLKKGGKILICGNGGSAADAQHFAAELSGRYKKERKALAGIALT   81 (188)
T ss_dssp             HHHHHHHHHHHHHHHHHG-G-GGHHHHHHHHHHHHHHHHTTCCEEEEESTHHHHHHHHHHHHHHSCSSSCCCCCCEEESS
T ss_pred             HHHHHHHHHHHHHHHHHH-H-HhHHHHHHHHHHHHHHHHcCCEEEEECCCCcchhhhHHHHhhcCCccccccccccccCC
Confidence            355666666666665532 2 2246788888777533   37999999999999999999999853      34555554


Q ss_pred             Cccccc--------------c-ccCCCCCCcEEEEEeCCCCcHHHHHHHHHHHHcCCeEEEEeCCCCCccccccCEEEEc
Q 019775           88 PLDALH--------------G-DIGILSSDDILVMFSKSGNTEELLKVVPCAKAKGAYLVSVTSVEGNALAAVCDMNVHL  152 (336)
Q Consensus        88 ~~~~~~--------------~-~~~~~~~~dlvi~iS~sG~~~~~~~~~~~ak~~g~~vi~IT~~~~s~l~~~ad~~i~~  152 (336)
                      +.....              . .-...+++|++|+||.||++++++++++.||++|++++++|++.++++.+++|+.|.+
T Consensus        82 ~~~a~~ta~~nd~~~e~~f~~ql~~~~~~gDili~iS~SG~S~nii~a~~~Ak~~g~~ti~ltg~~~~~l~~~~D~~i~i  161 (188)
T d1tk9a_          82 TDTSALSAIGNDYGFEFVFSRQVEALGNEKDVLIGISTSGKSPNVLEALKKAKELNMLCLGLSGKGGGMMNKLCDHNLVV  161 (188)
T ss_dssp             CCHHHHHHHHHHTCGGGHHHHHHHHHCCTTCEEEEECSSSCCHHHHHHHHHHHHTTCEEEEEEEGGGTTHHHHCSEEEEE
T ss_pred             CccccccccccccCHHHHHHHHHHHhcCCCcEEEEecCCCCCchhHHHHHHHHhhcceEEEEeCCCCchhHHhCCEEEEE
Confidence            211111              0 0113589999999999999999999999999999999999999999999999999999


Q ss_pred             CCCcccCCCCCCChhHHHHHHHHHHHHHHHHH
Q 019775          153 PVERELCPFDLAPVTSTAIQMVFGDTVAIAMM  184 (336)
Q Consensus       153 ~~~~~~~~~~~~~~~s~~~~~~l~d~l~~~~~  184 (336)
                      |+...        -...-.+++++++|...+-
T Consensus       162 ~s~~~--------~~iee~hl~i~H~l~~~ie  185 (188)
T d1tk9a_         162 PSDDT--------ARIQEMHILIIHTLCQIID  185 (188)
T ss_dssp             SCSCH--------HHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCc--------HHHHHHHHHHHHHHHHHHH
Confidence            98643        1234556677777765543

>d1moqa_ c.80.1.1 (A:) "Isomerase domain" of glucosamine 6-phosphate synthase (GLMS) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: SIS domain
superfamily: SIS domain
family: double-SIS domain
domain: "Isomerase domain" of glucosamine 6-phosphate synthase (GLMS)
species: Escherichia coli [TaxId: 562]

Probab=99.69  E-value=1.9e-16  Score=142.68  Aligned_cols=233  Identities=13%  Similarity=0.081  Sum_probs=161.1

Q ss_pred             cchHHHHHHHHHHHHHHHHHHhcC------ChhHHHH-HHHHHHcCCCeEEEEeccchHHHHHHHHHHHHhc-CCeeeec
Q 019775           15 VSENTLLDLFKSQQDHLNYFFQHL------SLPHTLT-FTQTLLKCRGTIFFTGVGKSGFVANKISQTLISL-GIKSGFL   86 (336)
Q Consensus        15 ~~~~~~~~~~~~~~~~l~~~~~~~------~~~~i~~-~~~~i~~a~~~I~i~G~G~s~~~a~~~~~~l~~~-g~~~~~~   86 (336)
                      ...+.+.+=+.++.+.+++++...      +.+.+.. +.+.+.+. +||+++|+|+|+++|...++.|.+. |+++...
T Consensus         5 ~~~~~m~kEI~eQP~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~i-~~I~~vG~GsS~~aa~~~~~~~~~~~~~~v~~~   83 (366)
T d1moqa_           5 IYRHYMQKEIYEQPNAIKNTLTGRISHGQVDLSELGPNADELLSKV-EHIQILACGTSYNSGMVSRYWFESLAGIPCDVE   83 (366)
T ss_dssp             TCSSHHHHHHHTHHHHHHHHHTTSEETTEECCGGGCSSHHHHHHHC-CEEEEEECHHHHHHHHHHHHHHHHHSCCCEEEE
T ss_pred             CCccHHHHHHHHHHHHHHHHHHHHhccCccchhhhhhhhHHHHhcC-CEEEEEEehHHHHHHHHHHHHHHHhcCcceEEE
Confidence            345556666778889999987643      2223332 33445677 5999999999999999999999875 8888877


Q ss_pred             CCccccccccCCCCCCcEEEEEeCCCCcHHHHHHHHHHHHcCC-eEEEEeCCCCCccccccCEEEEcCCCcccCCCCCCC
Q 019775           87 NPLDALHGDIGILSSDDILVMFSKSGNTEELLKVVPCAKAKGA-YLVSVTSVEGNALAAVCDMNVHLPVERELCPFDLAP  165 (336)
Q Consensus        87 ~~~~~~~~~~~~~~~~dlvi~iS~sG~~~~~~~~~~~ak~~g~-~vi~IT~~~~s~l~~~ad~~i~~~~~~~~~~~~~~~  165 (336)
                      .+++. .+......+++++|++|+||++.+++++++.++++|+ ++|+||++.+|++++.||+.+.+.++.+   .....
T Consensus        84 ~~sef-~~~~~~~~~~~lvI~iSqSG~s~~ti~a~~~a~~~g~~~ti~iT~~~~S~la~~ad~~i~~~~g~E---~~~~~  159 (366)
T d1moqa_          84 IASEF-RYRKSAVRRNSLMITLSQSGETADTLAGLRLSKELGYLGSLAICNVPGSSLVRESDLALMTNAGTE---IGVAS  159 (366)
T ss_dssp             EHHHH-HTSCCCCCTTEEEEEEESSSCCHHHHHHHHHHTTTTCSEEEEEESSTTCHHHHHSSEEEECCCCCC---CSSSC
T ss_pred             ecccc-cccccccCCCCEEEEeeccCCchhHHHHHHHHHHcCCCcEEEEECCCCCHHHHhcCcceeeccccc---ccchh
Confidence            66554 3444567889999999999999999999999999995 7999999999999999999999998877   34466


Q ss_pred             hhHHHHHHHHHHHHHHHHHhhcCCChHHHhhcCCCCchhhhhhhhhhhccccCCCCccccCCCcHHHHHHHHHhcCcceE
Q 019775          166 VTSTAIQMVFGDTVAIAMMGARNLTRDEYAANHPAGRIGKSLIFKVQDVMKPQKELPVCKEGDLIMDQLVELTSKGCGCL  245 (336)
Q Consensus       166 ~~s~~~~~~l~d~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~~~~~~~~~v~~~~~~~~~~~~~~i  245 (336)
                      +.+.+++++.+-.+...+....+...+......   ...+.    .......     .......+.+..+.+.  +...+
T Consensus       160 Tk~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~---~~~~~----~~~~~~~-----~~~~~~~~~~~~~~~~--~~~~~  225 (366)
T d1moqa_         160 TKAFTTQLTVLLMLVAKLSRLKGLDASIEHDIV---HGLQA----LPSRIEQ-----MLSQDKRIEALAEDFS--DKHHA  225 (366)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHH---HHHHH----HHHHHHH-----HTTCTTHHHHHHHHHT--TCSEE
T ss_pred             hhHHHHHHHHHHHHHHHhhhhcccchhHHHHHH---HHHHH----HHHhHHH-----HHHHHHHHHHHHHHHh--cCcce
Confidence            778888887777777776666543332211110   00000    0111111     1222333455555554  35677


Q ss_pred             EEEcCCCcEEEEeeHHHHHHHH
Q 019775          246 LVIDEEYHLIGTFTDGDLRRTL  267 (336)
Q Consensus       246 pVvd~~~~~~G~it~~dl~~~~  267 (336)
                      .++. .|-..|+..+..|.-..
T Consensus       226 ~~lG-~G~~~g~A~E~aLKl~E  246 (366)
T d1moqa_         226 LFLG-RGDQYPIALEGALKLKE  246 (366)
T ss_dssp             EEEE-CGGGHHHHHHHHHHHHH
T ss_pred             EEec-CCCcHHHHHHHHHHHHH
Confidence            7787 46677888877777433

>d1jr1a4 d.37.1.1 (A:113-232) Type II inosine monophosphate dehydrogenase CBS domains {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Type II inosine monophosphate dehydrogenase CBS domains
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=99.69  E-value=2e-18  Score=130.67  Aligned_cols=112  Identities=15%  Similarity=0.179  Sum_probs=58.9

Q ss_pred             cccCCCCccccCCCcHHHHHHHHHhcCcceEEEEcC---CCcEEEEeeHHHHHHHHHhcCCchhhhhHhhhc--CCCCee
Q 019775          215 MKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVIDE---EYHLIGTFTDGDLRRTLKASGEGIFKLTVGEMC--NRSPRT  289 (336)
Q Consensus       215 m~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~---~~~~~G~it~~dl~~~~~~~~~~~~~~~i~~~~--~~~~~~  289 (336)
                      |..++  +++++++|+.+|+++|.+++++++||+|+   +++++|++|.+|+...... .   ...++..++  .+++.+
T Consensus         2 m~~~p--vtv~~~~tl~da~~~m~~~~i~~~pVvd~~~~~~~lvGivT~~Di~~~~~~-~---~~~~~~~~~~~~~~~~~   75 (120)
T d1jr1a4           2 FITDP--VVLSPKDRVRDVFEAKARHGFCGIPITDTGRMGSRLVGIISSRDIDFLKEE-E---HDRFLEEIMTKREDLVV   75 (120)
T ss_dssp             EECTT--CC----CCCC--CCBC---------------CTTCCC--------------------------CCSBTTTSCC
T ss_pred             cccCC--EEECCcCCHHHHHHHHHHhCCCeEEEeeccccCCeEeeeeeeeeeeehhcc-c---cCceeEEEEeeccCceE
Confidence            44443  38999999999999999999999999984   5799999999998654332 1   133444443  446788


Q ss_pred             eCCCccHHHHHHHhcCCCCCccEeEEEeCCCcEEEEEehhhHhhc
Q 019775          290 IGPDAMAVEAMQKMESPPSPVQFLPVINRQNILIGIVTLHGLVSA  334 (336)
Q Consensus       290 v~~~~~l~~~~~~~~~~~~~~~~l~Vv~~~~~~iGiit~~di~~~  334 (336)
                      +.+++++.+|++.|.++  +.+.+||+|++|+++|+||+.||+++
T Consensus        76 v~~~~~~~~a~~~m~~~--~i~~lpVVd~~~~lvGiiT~~Di~k~  118 (120)
T d1jr1a4          76 APAGITLKEANEILQRS--KKGKLPIVNENDELVAIIARTDLKKN  118 (120)
T ss_dssp             EETTCCHHHHHHHTCSC--C---CEEEETTTEEEEEECHHHHHHH
T ss_pred             ECCCCCHHHHHHHHHHc--CccEEEEEcCCCEEEEEEEHHHhhhc
Confidence            99999999999999999  99999999999999999999999986

>d2j9la1 d.37.1.1 (A:578-746) Chloride channel protein 5, ClC-5 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Chloride channel protein 5, ClC-5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.69  E-value=7.3e-17  Score=129.56  Aligned_cols=122  Identities=18%  Similarity=0.205  Sum_probs=101.0

Q ss_pred             hhhhccccCCC---C-ccccCCCcHHHHHHHHHhcCcceEEEE--cCCCcEEEEeeHHHHHHHHHhcC------------
Q 019775          210 KVQDVMKPQKE---L-PVCKEGDLIMDQLVELTSKGCGCLLVI--DEEYHLIGTFTDGDLRRTLKASG------------  271 (336)
Q Consensus       210 ~v~~im~~~~~---~-~~~~~~~~v~~~~~~~~~~~~~~ipVv--d~~~~~~G~it~~dl~~~~~~~~------------  271 (336)
                      .++|+|.|...   + +.+.++.|++++.++|.+++++++||+  +++++++|+++.+||...+....            
T Consensus         4 ~a~DiM~p~~~~~~~~v~~~~~~tv~~a~~ll~~~~~~~~PVV~~~~~~~lvG~is~~dl~~~l~~~~~~~~~~~~~~~~   83 (169)
T d2j9la1           4 LAMDVMKPRRNDPLLTVLTQDSMTVEDVETIISETTYSGFPVVVSRESQRLVGFVLRRDLIISIENARKKQDGVVSTSII   83 (169)
T ss_dssp             BHHHHSBSCTTSCCCCCEESSCEEHHHHHHHHHHCCCSEEEEESCTTTCBEEEEEEHHHHHHHHHHHHTSCSCCCTTCEE
T ss_pred             chhhhcCcCCCCCceEEECCCcCCHHHHHHHHHHcCCCceeeeecCCCCeEEEEEEhHHHHHHHhcccccccccccchhh
Confidence            57899987532   1 234678899999999999999999999  45678999999999998775210            


Q ss_pred             -----------CchhhhhHhhhcCCCCeeeCCCccHHHHHHHhcCCCCCccEeEEEeCCCcEEEEEehhhHhhc
Q 019775          272 -----------EGIFKLTVGEMCNRSPRTIGPDAMAVEAMQKMESPPSPVQFLPVINRQNILIGIVTLHGLVSA  334 (336)
Q Consensus       272 -----------~~~~~~~i~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~l~Vv~~~~~~iGiit~~di~~~  334 (336)
                                 ......++.++|.+++.++.+++++.++++.|.++  +.+.+||+++ |+++|+||+.||+++
T Consensus        84 ~~~~~~~~~~~~~~~~~~v~~im~~~~~tv~~~~~l~~v~~~~~~~--~~~~l~V~d~-g~lvGiIt~~Dil~~  154 (169)
T d2j9la1          84 YFTEHSPPLPPYTPPTLKLRNILDLSPFTVTDLTPMEIVVDIFRKL--GLRQCLVTHN-GRLLGIITKKDVLKH  154 (169)
T ss_dssp             ECSSSCCCCCTTCCCCEECGGGEESSCCEEETTSBHHHHHHHHHHH--TCSEEEEEET-TEEEEEEEHHHHHHH
T ss_pred             hhcccchhhhhccccccchhhhccCCCEEECCCCcHHHHHHHHHhc--CceEEEEEEC-CEEEEEEEHHHHHHH
Confidence                       01113457899999999999999999999999999  8999999875 999999999999874

>d2v8qe2 d.37.1.1 (E:23-181) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.68  E-value=4.1e-17  Score=129.65  Aligned_cols=125  Identities=16%  Similarity=0.210  Sum_probs=105.9

Q ss_pred             hhhhhhccccCCCCccccCCCcHHHHHHHHHhcCcceEEEEcC-CCcEEEEeeHHHHHHHHHhcCCc-------------
Q 019775          208 IFKVQDVMKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVIDE-EYHLIGTFTDGDLRRTLKASGEG-------------  273 (336)
Q Consensus       208 ~~~v~~im~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~-~~~~~G~it~~dl~~~~~~~~~~-------------  273 (336)
                      ..++.|+|.+...+++++++.++.+|++.|.+++++.+||+++ +++++|+++..||...+......             
T Consensus        12 ~~t~~Dlm~~~~~vv~l~~~~sv~eA~~~l~~~~~~~~pVv~~~~~~~vG~is~~Dl~~~~~~~~~~~~~~~~~~~~~~~   91 (159)
T d2v8qe2          12 SHRCYDLIPTSSKLVVFDTSLQVKKAFFALVTNGVRAAPLWDSKKQSFVGMLTITDFINILHRYYKSALVQIYELEEHKI   91 (159)
T ss_dssp             HSBGGGGSCSEEEEEEEETTSBHHHHHHHHHHHTCSEEEEEETTTTEEEEEEEHHHHHHHHHHHHHHHTTTCCCGGGCBH
T ss_pred             CCEEEeECCCCCceEEEcCCCcHHHHHHHHHHcCCCceeEEECCCCcEEEEEEHHHHHHHHHhccccccchhhhhhhhhc
Confidence            3478999987766789999999999999999999999999974 68999999999999877542110             


Q ss_pred             -hhhhhHhhhcCCCCeeeCCCccHHHHHHHhcCCCCCccEeEEEe-CCCcEEEEEehhhHhhc
Q 019775          274 -IFKLTVGEMCNRSPRTIGPDAMAVEAMQKMESPPSPVQFLPVIN-RQNILIGIVTLHGLVSA  334 (336)
Q Consensus       274 -~~~~~i~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~l~Vv~-~~~~~iGiit~~di~~~  334 (336)
                       .......++|.+++.++.+++++.++++.|.++  +.+++||+| ++|+++|+||..||+++
T Consensus        92 ~~~~~~~~~~~~~~~~~v~~~~~l~~v~~~m~~~--~~~~v~Vvd~~~g~~~GivT~~dilk~  152 (159)
T d2v8qe2          92 ETWREVYLQDSFKPLVCISPNASLFDAVSSLIRN--KIHRLPVIDPESGNTLYILTHKRILKF  152 (159)
T ss_dssp             HHHHHHHSSSSCCCCCCBCTTSBHHHHHHHHHHH--TCSCEEEECTTTCCEEEEECHHHHHHH
T ss_pred             ccccceeeeeeccceEEECCCCcHHHHHHHHHHh--CCeEEEEEECCCCeEEEEEeHHHHHHH
Confidence             112345667888889999999999999999999  999999998 46899999999999975

>d2ooxe1 d.37.1.1 (E:3-181) Uncharacterized protein C1556.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein C1556.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=99.63  E-value=3e-16  Score=127.08  Aligned_cols=124  Identities=15%  Similarity=0.077  Sum_probs=103.2

Q ss_pred             hhhhhccccCCCCccccCCCcHHHHHHHHHhcCcceEEEEcC-CCcEEEEeeHHHHHHHHHhcC---C------------
Q 019775          209 FKVQDVMKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVIDE-EYHLIGTFTDGDLRRTLKASG---E------------  272 (336)
Q Consensus       209 ~~v~~im~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~-~~~~~G~it~~dl~~~~~~~~---~------------  272 (336)
                      .++.|+|.+...+++++++.++.+|+..|.+++++.+||+|. +++++|++|..|+...+....   .            
T Consensus        20 ~~~~dvm~~s~~vv~i~~~~~v~~A~~~m~~~~i~~lpVvd~~~~~~vGiis~~Di~~~l~~~~~~~~~~~~~~~~~~~~   99 (179)
T d2ooxe1          20 RTSYDVLPTSFRLIVFDVTLFVKTSLSLLTLNNIVSAPLWDSEANKFAGLLTMADFVNVIKYYYQSSSFPEAIAEIDKFR   99 (179)
T ss_dssp             SBHHHHSCSEEEEEEEETTSBHHHHHHHHHHHTCSCEEEEETTTTEEEEEECHHHHHHHHHHHHHHCSCGGGGGGGGGSB
T ss_pred             CEeeeeCCCCCcEEEEECcchHHHHHHHHHHcCCCeEEEEeCCCCeeEEEEeechHHHHHHhccccccchhhhhhhhccc
Confidence            367899987656889999999999999999999999999984 579999999999998764310   0            


Q ss_pred             ---chhhhhHhhhcCCCCeeeCCCccHHHHHHHhcCCCCCccEeEEEeCCC-----cEEEEEehhhHhhc
Q 019775          273 ---GIFKLTVGEMCNRSPRTIGPDAMAVEAMQKMESPPSPVQFLPVINRQN-----ILIGIVTLHGLVSA  334 (336)
Q Consensus       273 ---~~~~~~i~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~l~Vv~~~~-----~~iGiit~~di~~~  334 (336)
                         .....+....|.++++++.+++++.+++..|.++  +.+++||+|++|     +++|+||+.||+++
T Consensus       100 ~~~~~~~~~~~~~~~~~~i~v~~~~sl~~~~~~m~~~--~~~~lpVvd~~g~~~~~~vvgiiT~~dIlk~  167 (179)
T d2ooxe1         100 LLGLREVERKIGAIPPETIYVHPMHSLMDACLAMSKS--RARRIPLIDVDGETGSEMIVSVLTQYRILKF  167 (179)
T ss_dssp             HHHHHHHHHHTTCSCSSCCCBCTTSBHHHHHHHHHHT--TCSEEEEEEECTTTCCEEEEEEEEHHHHHHH
T ss_pred             hhhhcccceeeeecccCceEECCCCcHHHHHHHhhhc--CceEEEEEecCCCcCCCcEEEEEeHHHHHHH
Confidence               0011234556778889999999999999999999  999999998654     69999999999974

>d1x9ia_ c.80.1.1 (A:) Glucose-6-phosphate isomerase, conjectural {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: SIS domain
superfamily: SIS domain
family: double-SIS domain
domain: Glucose-6-phosphate isomerase, conjectural
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=99.31  E-value=4.9e-12  Score=110.27  Aligned_cols=101  Identities=27%  Similarity=0.329  Sum_probs=83.3

Q ss_pred             HHHcCCCeEEEEeccchHHHHHHHHHHHHhcCCeeeecCCccccccccCCCCCCcEEEEEeCCCCcHHHHHHHHHHHHcC
Q 019775           49 TLLKCRGTIFFTGVGKSGFVANKISQTLISLGIKSGFLNPLDALHGDIGILSSDDILVMFSKSGNTEELLKVVPCAKAKG  128 (336)
Q Consensus        49 ~i~~a~~~I~i~G~G~s~~~a~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~dlvi~iS~sG~~~~~~~~~~~ak~~g  128 (336)
                      .+.+. +||+++|+|+|+..|+.+...+.+.+.++......+     ....++++++|++|+||+|.+++.+++.++++|
T Consensus        32 ~~~~~-~~i~i~G~GgS~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~tlvI~iSqSG~T~Etl~a~~~a~~~g  105 (300)
T d1x9ia_          32 RIEAM-PRLYISGMGGSGVVADLIRDFSLTWNWEVEVIAVKD-----YFLKARDGLLIAVSYSGNTIETLYTVEYAKRRR  105 (300)
T ss_dssp             ECCCC-SEEEEECCHHHHHHHHHHHHHHHHTTCSSEEEEECS-----SCCCCSSSEEEEECSSSCCHHHHHHHHHHHHHT
T ss_pred             HhcCC-CeEEEEEecHHHHHHHHHHHHHHhcCCCceEEeecc-----cCCCCCCeEEEEEcCCCCcHHHHHHHHHHHhcC
Confidence            44566 699999999999999999998888887765543222     223457899999999999999999999999999


Q ss_pred             CeEEEEeCCCCCccccccCEEEEcCCCcc
Q 019775          129 AYLVSVTSVEGNALAAVCDMNVHLPVERE  157 (336)
Q Consensus       129 ~~vi~IT~~~~s~l~~~ad~~i~~~~~~~  157 (336)
                      ++++++|+  ++++...++..+.++...+
T Consensus       106 ~~~i~it~--~~~l~~~~~~~~~i~~~~~  132 (300)
T d1x9ia_         106 IPAVAITT--GGRLAQMGVPTVIVPKASA  132 (300)
T ss_dssp             CCEEEEES--STTGGGSSSCEEECCCCSS
T ss_pred             cceeeccC--CchHHHhhhcccceecccc
Confidence            99999997  5677888888888877654

>d2ouxa2 d.37.1.1 (A:136-262) Magnesium transporter MgtE {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Magnesium transporter MgtE
species: Enterococcus faecalis [TaxId: 1351]

Probab=98.79  E-value=5.1e-09  Score=78.66  Aligned_cols=59  Identities=19%  Similarity=0.220  Sum_probs=54.3

Q ss_pred             hhhhhccccCCCCccccCCCcHHHHHHHHHhcCcceEEEEcCCCcEEEEeeHHHHHHHHHh
Q 019775          209 FKVQDVMKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRRTLKA  269 (336)
Q Consensus       209 ~~v~~im~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~it~~dl~~~~~~  269 (336)
                      .+++++|.++  ++++++++++.+++++|.+++...+||+|++|+++|+||.+|++..+.+
T Consensus        65 ~~v~~im~~~--~~~v~~~~~l~~a~~~m~~~~~~~lPVVD~~g~lvGiIt~~Dil~~i~e  123 (127)
T d2ouxa2          65 TLIADILNER--VISVHVGDDQEDVAQTIRDYDFLAVPVTDYDDHLLGIVTVDDIIDVIDD  123 (127)
T ss_dssp             SBHHHHSBSC--CCCEETTSBHHHHHHHHHHHTCSEEEEECTTCBEEEEEEHHHHHHHHHH
T ss_pred             EEhhhhccCC--CccCCCCCCHHHHHHHHHHhCCEEEEEEeCCCEEEEEEEHHHHHHHHHH
Confidence            4789999987  4599999999999999999999999999999999999999999988754

>d1moqa_ c.80.1.1 (A:) "Isomerase domain" of glucosamine 6-phosphate synthase (GLMS) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: SIS domain
superfamily: SIS domain
family: double-SIS domain
domain: "Isomerase domain" of glucosamine 6-phosphate synthase (GLMS)
species: Escherichia coli [TaxId: 562]

Probab=98.74  E-value=1.1e-07  Score=84.41  Aligned_cols=144  Identities=14%  Similarity=0.148  Sum_probs=118.3

Q ss_pred             hHHHHHHHHHHcCCCeEEEEeccchHHHHHHHHHHHHhc-CCeeeecCCccccccccCCCCCCcEEEEEeCCCCc-HHHH
Q 019775           41 PHTLTFTQTLLKCRGTIFFTGVGKSGFVANKISQTLISL-GIKSGFLNPLDALHGDIGILSSDDILVMFSKSGNT-EELL  118 (336)
Q Consensus        41 ~~i~~~~~~i~~a~~~I~i~G~G~s~~~a~~~~~~l~~~-g~~~~~~~~~~~~~~~~~~~~~~dlvi~iS~sG~~-~~~~  118 (336)
                      ..+.+.++.+.++ ++++++|.|.++.+|.+.+.+|..+ ..++..++..+..+.....++++..+|++...|.+ +.+.
T Consensus       210 ~~~~~~~~~~~~~-~~~~~lG~G~~~g~A~E~aLKl~E~~~~~a~~~~~~Ef~HGP~~~i~~~~~vi~l~~~~~~~~~~~  288 (366)
T d1moqa_         210 KRIEALAEDFSDK-HHALFLGRGDQYPIALEGALKLKEISYIHAEAYAAGELKHGPLALIDADMPVIVVAPNNELLEKLK  288 (366)
T ss_dssp             THHHHHHHHHTTC-SEEEEEECGGGHHHHHHHHHHHHHHHCCEEEEEEGGGGGGTGGGGCSTTSCEEEESCCHHHHHHHH
T ss_pred             HHHHHHHHHHhcC-cceEEecCCCcHHHHHHHHHHHHHHHhHeEEeecHHHhhCCchheecCCceEEEecCCChHHHHHH
Confidence            5678888888888 6999999999999999999999987 88888888888888888899999999999877665 5677


Q ss_pred             HHHHHHHHcCCeEEEEeCCCCCccccccCEEEEcCCCcccCCCCCCChhHHHHHHHHHHHHHHHHHhhcCCChHH
Q 019775          119 KVVPCAKAKGAYLVSVTSVEGNALAAVCDMNVHLPVERELCPFDLAPVTSTAIQMVFGDTVAIAMMGARNLTRDE  193 (336)
Q Consensus       119 ~~~~~ak~~g~~vi~IT~~~~s~l~~~ad~~i~~~~~~~~~~~~~~~~~s~~~~~~l~d~l~~~~~~~~~~~~~~  193 (336)
                      +.++.++++|.++++||+.........+++++.+|...+        ..+.+...+.+++|...+...+|.++++
T Consensus       289 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~~p~~~~--------~l~pl~~~ip~Qlla~~~A~~~G~~PD~  355 (366)
T d1moqa_         289 SNIEEVRARGGQLYVFADQDAGFVSSDNMHIIEMPHVEE--------VIAPIFYTVPLQLLAYHVALIKGTDVDQ  355 (366)
T ss_dssp             HHHHHTGGGTCCEEEEEEGGGCCCCBTTEEEEEECCCCG--------GGHHHHHHHHHHHHHHHHHHHHTCCSSS
T ss_pred             HHHHHHHHcCCeEEEEecCCccccccCCceEEecCCCch--------HHHHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence            889999999999999999887777788889988876422        2244445566788888888887766544

>d2yvxa2 d.37.1.1 (A:132-275) Magnesium transporter MgtE {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Magnesium transporter MgtE
species: Thermus thermophilus [TaxId: 274]

Probab=98.57  E-value=5.5e-08  Score=74.49  Aligned_cols=59  Identities=24%  Similarity=0.305  Sum_probs=53.9

Q ss_pred             hhhhhccccCCCCccccCCCcHHHHHHHHHhcCcceEEEEcCCCcEEEEeeHHHHHHHHHh
Q 019775          209 FKVQDVMKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRRTLKA  269 (336)
Q Consensus       209 ~~v~~im~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~it~~dl~~~~~~  269 (336)
                      .++.++|.+.  ++++++++++.+|++.|.+++...+||+|++|+++|+||.+|++..+..
T Consensus        65 ~~v~~im~~~--~~~v~~~~~~~~a~~~m~~~~~~~lPVVd~~g~lvGiIt~~Dil~~l~~  123 (144)
T d2yvxa2          65 TRVAEIMNPK--VVYVRTDTDQEEVARLMADYDFTVLPVVDEEGRLVGIVTVDDVLDVLEA  123 (144)
T ss_dssp             CBSTTTSBSS--CCCEESSCCHHHHHHHHHHSCCSEEEEECSSCBEEEEEEHHHHHHHHHH
T ss_pred             cchHHhcccC--CccCCCCChHHHHHHHHHHcCCCEEEEEeECCEEEEEEEHHHHHHHHHH
Confidence            3678899987  4589999999999999999999999999999999999999999988764

>d2o16a3 d.37.1.1 (A:20-158) Hypothetical protein VC0737 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein VC0737
species: Vibrio cholerae [TaxId: 666]

Probab=98.49  E-value=3.6e-08  Score=75.06  Aligned_cols=55  Identities=27%  Similarity=0.472  Sum_probs=51.6

Q ss_pred             hHhhhcCCCCeeeCCCccHHHHHHHhcCCCCCccEeEEEeCCCcEEEEEehhhHhhc
Q 019775          278 TVGEMCNRSPRTIGPDAMAVEAMQKMESPPSPVQFLPVINRQNILIGIVTLHGLVSA  334 (336)
Q Consensus       278 ~i~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~l~Vv~~~~~~iGiit~~di~~~  334 (336)
                      ++.++|.+++.++.+++++.+|++.|.++  +.+.+||+|++|+++|+||..|+++.
T Consensus         3 ~v~diM~~~~~~v~~~~tl~~a~~~m~~~--~~~~lpVvd~~~~~~Giit~~dl~~~   57 (139)
T d2o16a3           3 KVEDMMTRHPHTLLRTHTLNDAKHLMEAL--DIRHVPIVDANKKLLGIVSQRDLLAA   57 (139)
T ss_dssp             BGGGTSEESCCCBCTTSBHHHHHHHHHHH--TCSEEEEECTTCBEEEEEEHHHHHHH
T ss_pred             EHHHhCcCCCeEECCcCCHHHHHHHHHHc--CCCeeeeecccccccccccHHHHHHH
Confidence            57899999999999999999999999999  99999999999999999999999753

>d2yzqa2 d.37.1.1 (A:1-122) Uncharacterized protein PH1780 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH1780
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=98.49  E-value=9.8e-08  Score=70.86  Aligned_cols=58  Identities=24%  Similarity=0.338  Sum_probs=50.5

Q ss_pred             hhhhccccCCCCccccCCCcHHHHHHHHHhcCcceEEEEcCCCcEEEEeeHHHHHHHHHh
Q 019775          210 KVQDVMKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRRTLKA  269 (336)
Q Consensus       210 ~v~~im~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~it~~dl~~~~~~  269 (336)
                      +++++|.++  +++++++.++.++++.|.+++.+.+||+|++|+++|+||.+|+++....
T Consensus        61 ~~~~~~~~~--~~~v~~~~~l~~~~~~~~~~~~~~lpVvd~~~~liGiit~~dil~~~~~  118 (122)
T d2yzqa2          61 QLAMLVKRD--VPVVKENDTLKKAAKLMLEYDYRRVVVVDSKGKPVGILTVGDIIRRYFA  118 (122)
T ss_dssp             ---CCCBSC--CCEEETTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHTTT
T ss_pred             chhhccccc--eeecchhhHHHHHHHHHHHcCcEEEEEEeCCCEEEEEEEHHHHHHHHHh
Confidence            477889887  4599999999999999999999999999999999999999999986654

>d3ddja1 d.37.1.1 (A:136-276) Uncharacterized protein SSO3205 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein SSO3205
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=98.48  E-value=1.6e-07  Score=71.48  Aligned_cols=60  Identities=27%  Similarity=0.310  Sum_probs=54.4

Q ss_pred             hhhhhhccccCCCCccccCCCcHHHHHHHHHhcCcceEEEEcCCCcEEEEeeHHHHHHHHHh
Q 019775          208 IFKVQDVMKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRRTLKA  269 (336)
Q Consensus       208 ~~~v~~im~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~it~~dl~~~~~~  269 (336)
                      ..+++++|.+.  +++++++.++.+++++|.+++..++||+|++|+++|+||.+|++..+.+
T Consensus        72 ~~~v~~im~~~--~~~v~~~~~~~~~~~~m~~~~~~~l~Vvd~~~~~iGiIt~~Dil~~l~~  131 (141)
T d3ddja1          72 GKVVKDVMVTN--LVTIDELASVNRAAAEMIVKRIGSLLILNKDNTIRGIITERDLLIALHH  131 (141)
T ss_dssp             TCBHHHHSBCC--CCBCCTTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHHH
T ss_pred             CCCHHHHhCcc--cccccccchhhHHHHHHHHcCCCEEEEEccCCEEEEEEEHHHHHHHHHH
Confidence            34788999986  5599999999999999999999999999999999999999999988764

>d2yzia1 d.37.1.1 (A:4-135) Uncharacterized protein PH0107 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH0107
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=98.47  E-value=6.9e-08  Score=72.78  Aligned_cols=57  Identities=21%  Similarity=0.223  Sum_probs=53.6

Q ss_pred             hhhHhhhcCCCCeeeCCCccHHHHHHHhcCCCCCccEeEEEeCCCcEEEEEehhhHhhc
Q 019775          276 KLTVGEMCNRSPRTIGPDAMAVEAMQKMESPPSPVQFLPVINRQNILIGIVTLHGLVSA  334 (336)
Q Consensus       276 ~~~i~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~l~Vv~~~~~~iGiit~~di~~~  334 (336)
                      ..|+.++|.+++.++.+++++.++++.|.++  +...+||+|++|+++|+||..|+++.
T Consensus         4 ~~pV~~im~~~~~~v~~~~t~~~a~~~m~~~--~~~~~~Vvd~~~~~~Giit~~di~~~   60 (132)
T d2yzia1           4 KAPIKVYMTKKLLGVKPSTSVQEASRLMMEF--DVGSLVVINDDGNVVGFFTKSDIIRR   60 (132)
T ss_dssp             TSBGGGTCBCCCCEECTTSBHHHHHHHHHHH--TCSEEEEECTTSCEEEEEEHHHHHHH
T ss_pred             CCcHHHHcCCCCeEECCcCcHHHHHHHHHHc--CCcEEEEecccceeeeeeeHHHHHHH
Confidence            4689999999999999999999999999999  99999999999999999999999864

>d2yzqa1 d.37.1.1 (A:123-278) Uncharacterized protein PH1780 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH1780
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=98.47  E-value=8.4e-08  Score=74.40  Aligned_cols=57  Identities=18%  Similarity=0.229  Sum_probs=53.4

Q ss_pred             hhhHhhhcCCCCeeeCCCccHHHHHHHhcCCCCCccEeEEEeCCCcEEEEEehhhHhhc
Q 019775          276 KLTVGEMCNRSPRTIGPDAMAVEAMQKMESPPSPVQFLPVINRQNILIGIVTLHGLVSA  334 (336)
Q Consensus       276 ~~~i~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~l~Vv~~~~~~iGiit~~di~~~  334 (336)
                      ..++.++|.+++..+.+++++.+|++.|.++  +...+||+|++|+++|+||..|+++.
T Consensus         3 ~~~v~~~m~r~v~~v~~~~~l~~a~~~m~~~--~~~~lPVvd~~~~lvG~it~~Dl~~~   59 (156)
T d2yzqa1           3 GVEIEPYYQRYVSIVWEGTPLKAALKALLLS--NSMALPVVDSEGNLVGIVDETDLLRD   59 (156)
T ss_dssp             GCBSTTTSBSCCCCEETTSBHHHHHHHHHTC--SSSEEEEECTTSCEEEEEEGGGGGGC
T ss_pred             CCCHHHHhcCCCeEECCcCcHHHHHHHHHHc--CCCEEEEEeCCCCceeEEeeeechhh
Confidence            4678999999999999999999999999999  99999999999999999999999753

>d3ddja2 d.37.1.1 (A:1-135) Uncharacterized protein SSO3205 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein SSO3205
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=98.47  E-value=6.9e-08  Score=72.98  Aligned_cols=59  Identities=17%  Similarity=0.207  Sum_probs=53.8

Q ss_pred             hhhhhhccccCCCCccccCCCcHHHHHHHHHhcCcceEEEEcCCCcEEEEeeHHHHHHHHH
Q 019775          208 IFKVQDVMKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRRTLK  268 (336)
Q Consensus       208 ~~~v~~im~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~it~~dl~~~~~  268 (336)
                      ..+++++|..+  +.+++++.++.+++++|.+++.+++||+|++|+++|+||.+|+++.+.
T Consensus        73 ~~~v~~im~~~--~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiit~~Dil~~~~  131 (135)
T d3ddja2          73 TTPIIDYMTPN--PVTVYNTSDEFTAINIMVTRNFGSLPVVDINDKPVGIVTEREFLLLYK  131 (135)
T ss_dssp             TSBGGGTSEES--CCCEETTSCHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHGGGGG
T ss_pred             cCCHHHHhCCc--cceEEeccccchhhhhhhhcceeEEEEEeCCCEEEEEEEHHHHHHHHH
Confidence            45789999987  459999999999999999999999999999999999999999998654

>d1y5ha3 d.37.1.1 (A:2-124) Hypothetical protein Rv2626c {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein Rv2626c
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.46  E-value=3.2e-08  Score=73.65  Aligned_cols=55  Identities=22%  Similarity=0.306  Sum_probs=51.0

Q ss_pred             hHhhhcCCCCeeeCCCccHHHHHHHhcCCCCCccEeEEEeCCCcEEEEEehhhHhhc
Q 019775          278 TVGEMCNRSPRTIGPDAMAVEAMQKMESPPSPVQFLPVINRQNILIGIVTLHGLVSA  334 (336)
Q Consensus       278 ~i~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~l~Vv~~~~~~iGiit~~di~~~  334 (336)
                      .++++|.+++.++.+++++.+|++.|.++  +.+.+||+|++|+++|+||..|+++.
T Consensus         2 t~~diM~~~~~~v~~~~tl~~a~~~m~~~--~~~~~pVvd~~~~~~Giit~~Di~~~   56 (123)
T d1y5ha3           2 TARDIMNAGVTCVGEHETLTAAAQYMREH--DIGALPICGDDDRLHGMLTDRDIVIK   56 (123)
T ss_dssp             CHHHHSEETCCCEETTSBHHHHHHHHHHH--TCSEEEEECGGGBEEEEEEHHHHHHT
T ss_pred             CHHHhcCCCCcEECCcCcHHHHHHHHHHc--CCCceEEEeccchhhhhhhhhhHhhh
Confidence            47889999999999999999999999999  99999999988999999999998763

>d2ef7a1 d.37.1.1 (A:1-127) Uncharacterized protein ST2348 {Sulfolobus tokodaii [TaxId: 111955]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein ST2348
species: Sulfolobus tokodaii [TaxId: 111955]

Probab=98.46  E-value=1.6e-07  Score=70.10  Aligned_cols=59  Identities=22%  Similarity=0.294  Sum_probs=53.3

Q ss_pred             hhhhhccccCCCCccccCCCcHHHHHHHHHhcCcceEEEEcCCCcEEEEeeHHHHHHHHHh
Q 019775          209 FKVQDVMKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRRTLKA  269 (336)
Q Consensus       209 ~~v~~im~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~it~~dl~~~~~~  269 (336)
                      .+++++|.++  ++++++++++.++.+.|.+++.+++||+|++|+++|+||..||++.+.+
T Consensus        67 ~~v~~~~~~~--~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~~~lvGiit~~Dll~~i~~  125 (127)
T d2ef7a1          67 TKAEEFMTAS--LITIREDSPITGALALMRQFNIRHLPVVDDKGNLKGIISIRDITRAIDD  125 (127)
T ss_dssp             CBGGGTSEEC--CCCEETTSBHHHHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHHH
T ss_pred             chhhhhhhhh--ccccccccchhHHHHHHHHcCceEEEEEeCCCeEEEEEEHHHHHHHHHh
Confidence            3678899887  4589999999999999999999999999999999999999999998753

>d2v8qe1 d.37.1.1 (E:182-326) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.45  E-value=6.9e-07  Score=68.14  Aligned_cols=60  Identities=15%  Similarity=0.167  Sum_probs=52.4

Q ss_pred             hhhhhccccCCCCccccCCCcHHHHHHHHHhcCcceEEEEcCCCcEEEEeeHHHHHHHHHhc
Q 019775          209 FKVQDVMKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRRTLKAS  270 (336)
Q Consensus       209 ~~v~~im~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~it~~dl~~~~~~~  270 (336)
                      +.+...|.+.  ++++.+++++.++++.|.+++..++||+|++|+++|+||.+||.+++...
T Consensus        84 ~~~~~~~~~~--~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~g~l~GiVt~~dii~~lv~~  143 (145)
T d2v8qe1          84 LQHRSHYFEG--VLKCYLHETLEAIINRLVEAEVHRLVVVDEHDVVKGIVSLSDILQALVLT  143 (145)
T ss_dssp             GGGCCSCCCS--CCEECTTSBHHHHHHHHHHHTCSEEEEECTTSBEEEEEEHHHHHHHHHSS
T ss_pred             cchhhhccCC--CeEECCCCcHHHHHHHHHHcCceEEEEEccCCEEEEEEEHHHHHHHHHhc
Confidence            3455566766  45899999999999999999999999999999999999999999988753

>d1vr9a3 d.37.1.1 (A:1-121) Hypothetical protein TM0892, CBS tandem {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein TM0892, CBS tandem
species: Thermotoga maritima [TaxId: 2336]

Probab=98.44  E-value=2.8e-07  Score=68.18  Aligned_cols=58  Identities=24%  Similarity=0.218  Sum_probs=53.1

Q ss_pred             hhhhccccCCCCccccCCCcHHHHHHHHHhcCcceEEEEcCCCcEEEEeeHHHHHHHHHh
Q 019775          210 KVQDVMKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRRTLKA  269 (336)
Q Consensus       210 ~v~~im~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~it~~dl~~~~~~  269 (336)
                      ++.++|..++  ++++++.++.+++++|.+++...+||+|++|+++|+||.+|++..+.+
T Consensus        61 ~v~~~~~~~~--~~v~~~~~l~~~~~~~~~~~~~~lpVvde~g~~~Gvit~~dil~~l~~  118 (121)
T d1vr9a3          61 SVFNKVSLPD--FFVHEEDNITHALLLFLEHQEPYLPVVDEEMRLKGAVSLHDFLEALIE  118 (121)
T ss_dssp             BSGGGCBCTT--CCEETTSBHHHHHHHHHHCCCSEEEEECTTCBEEEEEEHHHHHHHHHH
T ss_pred             cccccccCcc--EEECCCCCHHHHHHHHHhcCceeeeeECCCCeEEEEEEHHHHHHHHHH
Confidence            5788888764  489999999999999999999999999999999999999999998765

>d1jr1a4 d.37.1.1 (A:113-232) Type II inosine monophosphate dehydrogenase CBS domains {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Type II inosine monophosphate dehydrogenase CBS domains
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=98.41  E-value=1.3e-07  Score=69.89  Aligned_cols=57  Identities=19%  Similarity=0.331  Sum_probs=44.6

Q ss_pred             hhhhccccCCCCccccCCCcHHHHHHHHHhcCcceEEEEcCCCcEEEEeeHHHHHHH
Q 019775          210 KVQDVMKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRRT  266 (336)
Q Consensus       210 ~v~~im~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~it~~dl~~~  266 (336)
                      ++..+|.....+++++++.++.+|.++|.+++.+++||+|++|+++|+||.+|+++.
T Consensus        62 ~~~~~~~~~~~~~~v~~~~~~~~a~~~m~~~~i~~lpVVd~~~~lvGiiT~~Di~k~  118 (120)
T d1jr1a4          62 FLEEIMTKREDLVVAPAGITLKEANEILQRSKKGKLPIVNENDELVAIIARTDLKKN  118 (120)
T ss_dssp             ----CCSBTTTSCCEETTCCHHHHHHHTCSCC---CEEEETTTEEEEEECHHHHHHH
T ss_pred             eeEEEEeeccCceEECCCCCHHHHHHHHHHcCccEEEEEcCCCEEEEEEEHHHhhhc
Confidence            455566554456789999999999999999999999999999999999999999875

>d1pvma4 d.37.1.1 (A:1-142) Hypothetical protein Ta0289 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein Ta0289
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.38  E-value=1.3e-07  Score=72.15  Aligned_cols=56  Identities=14%  Similarity=0.230  Sum_probs=52.5

Q ss_pred             hhHhhhcCCCCeeeCCCccHHHHHHHhcCCCCCccEeEEEeCCCcEEEEEehhhHhhc
Q 019775          277 LTVGEMCNRSPRTIGPDAMAVEAMQKMESPPSPVQFLPVINRQNILIGIVTLHGLVSA  334 (336)
Q Consensus       277 ~~i~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~l~Vv~~~~~~iGiit~~di~~~  334 (336)
                      +++.++|.+++.++.+++++.+|++.|.++  +...+||+|++|+++|+||..|+++.
T Consensus         3 m~v~dim~~~~~~v~~~~tl~~a~~~m~~~--~~~~~~V~d~~~~~~Giit~~di~~~   58 (142)
T d1pvma4           3 MRVEKIMNSNFKTVNWNTTVFDAVKIMNEN--HLYGLVVKDDNGNDVGLLSERSIIKR   58 (142)
T ss_dssp             CBGGGTSBTTCCEEETTCBHHHHHHHHHHH--TCCEEEEECTTSCEEEEEEHHHHHHH
T ss_pred             EEHHHhCCCCCcEECCcCcHHHHHHHHHHC--CCceEeeeccCCcccceEEeechhhh
Confidence            568999999999999999999999999999  99999999999999999999999763

>d2rc3a1 d.37.1.1 (A:23-149) Uncharacterized protein NE2398 {Nitrosomonas europaea [TaxId: 915]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein NE2398
species: Nitrosomonas europaea [TaxId: 915]

Probab=98.37  E-value=4e-07  Score=67.93  Aligned_cols=57  Identities=23%  Similarity=0.294  Sum_probs=51.7

Q ss_pred             hhhhhccccCCCCccccCCCcHHHHHHHHHhcCcceEEEEcCCCcEEEEeeHHHHHHHHH
Q 019775          209 FKVQDVMKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRRTLK  268 (336)
Q Consensus       209 ~~v~~im~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~it~~dl~~~~~  268 (336)
                      .+++++|.++  ++++.+++++.++++.|.+++.+++||+| +|+++|+||..|+++.+.
T Consensus        70 ~~v~~im~~~--~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~~~~~GiIt~~Dil~~~i  126 (127)
T d2rc3a1          70 TQVKEIMTRQ--VAYVDLNNTNEDCMALITEMRVRHLPVLD-DGKVIGLLSIGDLVKDAI  126 (127)
T ss_dssp             SBGGGTSBCS--CCCBCTTCBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHHHH
T ss_pred             eeEeeeccce--eEEeccCccHHHHHHHHHHCCCcEEEEEE-CCEEEEEEEHHHHHHHHh
Confidence            4788999987  45999999999999999999999999998 689999999999998754

>d1yava3 d.37.1.1 (A:13-144) Hypothetical protein YkuL {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein YkuL
species: Bacillus subtilis [TaxId: 1423]

Probab=98.36  E-value=4.5e-07  Score=68.09  Aligned_cols=59  Identities=24%  Similarity=0.303  Sum_probs=51.7

Q ss_pred             hhhhhhhccccCCCCccccCCCcHHHHHHHHHhcCcceEEEEcCCCcEEEEeeHHHHHHHHHh
Q 019775          207 LIFKVQDVMKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRRTLKA  269 (336)
Q Consensus       207 ~~~~v~~im~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~it~~dl~~~~~~  269 (336)
                      ...+++++|.++  ++++++++++.++++.|.+++  .+||+|++|+++|+||.+|+++++.+
T Consensus        72 ~~~~v~~~m~~~--~~~v~~~~~l~~~~~~~~~~~--~l~Vvd~~~~~~Givt~~dil~~l~~  130 (132)
T d1yava3          72 DQITVEEVMLTD--IPRLHINDPIMKGFGMVINNG--FVCVENDEQVFEGIFTRRVVLKELNK  130 (132)
T ss_dssp             TTSBHHHHSBCS--CCEEETTSBHHHHHHHTTTCS--EEEEECTTCBEEEEEEHHHHHHHHHH
T ss_pred             cccccccccccc--ccccccchhHHHHHHHHHhCC--EEEEEccCCEEEEEEEHHHHHHHHHh
Confidence            345889999986  559999999999999998765  49999999999999999999998764

>d1o50a3 d.37.1.1 (A:1-145) Hypothetical protein TM0935 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein TM0935
species: Thermotoga maritima [TaxId: 2336]

Probab=98.34  E-value=2.6e-07  Score=70.56  Aligned_cols=56  Identities=20%  Similarity=0.334  Sum_probs=51.8

Q ss_pred             hhHhhhcCCCCeeeCCCccHHHHHHHhcCCCCCccEeEEEeCCCcEEEEEehhhHhhc
Q 019775          277 LTVGEMCNRSPRTIGPDAMAVEAMQKMESPPSPVQFLPVINRQNILIGIVTLHGLVSA  334 (336)
Q Consensus       277 ~~i~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~l~Vv~~~~~~iGiit~~di~~~  334 (336)
                      ..+.++|.++|..+.+++++.++++.|.++  +...+||+|++|+++|+||..||++.
T Consensus         4 ~~v~~~m~~~p~~v~~~~~v~~a~~~m~~~--~~~~ipVvd~~~~~vGiis~~Dl~~~   59 (145)
T d1o50a3           4 KDVCKLISLKPTVVEEDTPIEEIVDRILED--PVTRTVYVARDNKLVGMIPVMHLLKV   59 (145)
T ss_dssp             HHHTTSSCCCCEEECTTCBHHHHHHHHHHS--TTCCEEEEEETTEEEEEEEHHHHHHH
T ss_pred             eEhHHhCCCCCEEECCcCcHHHHHHHHHHc--CCceEEEeccCcceeeeeccchhhhh
Confidence            457788999999999999999999999999  99999999988999999999999863

>d1pbja3 d.37.1.1 (A:2-121) Hypothetical protein MTH1622 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein MTH1622
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=98.27  E-value=3.4e-07  Score=67.56  Aligned_cols=54  Identities=19%  Similarity=0.203  Sum_probs=49.7

Q ss_pred             hHhhhcCCCCeeeCCCccHHHHHHHhcCCCCCccEeEEEeCCCcEEEEEehhhHhhc
Q 019775          278 TVGEMCNRSPRTIGPDAMAVEAMQKMESPPSPVQFLPVINRQNILIGIVTLHGLVSA  334 (336)
Q Consensus       278 ~i~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~l~Vv~~~~~~iGiit~~di~~~  334 (336)
                      ++.++|.+++.++.+++++.++++.|.++  +...+||+++ |+++|+||..||+++
T Consensus         1 kV~diM~~~~~~v~~~~sl~ea~~~~~~~--~~~~~~V~~~-~~~~Gvit~~Di~~~   54 (120)
T d1pbja3           1 RVEDVMVTDVDTIDITASLEDVLRNYVEN--AKGSSVVVKE-GVRVGIVTTWDVLEA   54 (120)
T ss_dssp             CHHHHCBCSCCEEETTCBHHHHHHHHHHH--CCCEEEEEET-TEEEEEEEHHHHHHH
T ss_pred             ChHHhCCCCCeEECCcCcHHHHHHHHHHc--CceEEEEEeC-CcEEEEEEeeecccc
Confidence            36889999999999999999999999999  8999999886 999999999999863

>d1zfja4 d.37.1.1 (A:95-220) Type II inosine monophosphate dehydrogenase CBS domains {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Type II inosine monophosphate dehydrogenase CBS domains
species: Streptococcus pyogenes [TaxId: 1314]

Probab=98.26  E-value=5.3e-07  Score=67.14  Aligned_cols=50  Identities=20%  Similarity=0.290  Sum_probs=45.2

Q ss_pred             cCCCCeeeCCCccHHHHHHHhcCCCCCccEeEEEeC--CCcEEEEEehhhHhhc
Q 019775          283 CNRSPRTIGPDAMAVEAMQKMESPPSPVQFLPVINR--QNILIGIVTLHGLVSA  334 (336)
Q Consensus       283 ~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~l~Vv~~--~~~~iGiit~~di~~~  334 (336)
                      |..+|.++.+++++.+|++.|.++  +...+||+|+  +|+++|+||..|+.++
T Consensus         3 mi~dpvtv~~~~tv~~a~~~m~~~--~~~~~pVvD~~~~~~lvGivt~~Di~~~   54 (126)
T d1zfja4           3 VIIDPFFLTPEHKVSEAEELMQRY--RISGVPIVETLANRKLVGIITNRDMRFI   54 (126)
T ss_dssp             TSSSCCCBCSSSBHHHHHHHHHHT--TCSEEEEESCTTTCBEEEEEEHHHHHHC
T ss_pred             CEeCceEECCCCCHHHHHHHHHHh--CCCcEEEEeeccCCeEEEEeEHHHHHHh
Confidence            345688999999999999999999  9999999986  6889999999999875

>d1j5xa_ c.80.1.1 (A:) Hypothetical protein TM0813 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: SIS domain
superfamily: SIS domain
family: double-SIS domain
domain: Hypothetical protein TM0813
species: Thermotoga maritima [TaxId: 2336]

Probab=98.25  E-value=6.8e-06  Score=71.45  Aligned_cols=121  Identities=17%  Similarity=0.171  Sum_probs=93.7

Q ss_pred             cCCCeEEEEeccchHHHHHHHHHHHHhc-CCeeeecCCccccccccCCCCCCcEEEEEeCCCCcHHHHHHHHHHHHcCCe
Q 019775           52 KCRGTIFFTGVGKSGFVANKISQTLISL-GIKSGFLNPLDALHGDIGILSSDDILVMFSKSGNTEELLKVVPCAKAKGAY  130 (336)
Q Consensus        52 ~a~~~I~i~G~G~s~~~a~~~~~~l~~~-g~~~~~~~~~~~~~~~~~~~~~~dlvi~iS~sG~~~~~~~~~~~ak~~g~~  130 (336)
                      +. ++++++|.|.++.+|.+.+.+|.+. ++++..+...+..+.....++++.++++++.+|..+...++++..+++|++
T Consensus       198 ~~-~~~~~lG~G~~~~~A~e~alKl~E~~~i~a~~~~~~Ef~HGP~~~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~g~~  276 (329)
T d1j5xa_         198 EH-DHFVFLGMSEFFGVSLESALKCIEMSLTFSEAYSTLEYRHGPKALVKKGTLVFMQKVSGMDEQEKRLRKELESLGAT  276 (329)
T ss_dssp             GC-CEEEEECCTHHHHHHHHHHHHHHHHHCCEEEEECGGGGGTTGGGGCCTTEEEEEECCTTCHHHHHHHHHHHHHTTCE
T ss_pred             cc-ceeEEecCCCccHhHHHHHHHHHhhcceeEEeechhhhhcCcchhccCCceeeeecchHHHHHHHHHHHHHHHcCCe
Confidence            45 6999999999999999999999987 888888888888888888899999999999898888899999999999999


Q ss_pred             EEEEeCCCCCccccccCEEEEcCCCcccCCCCCCChhHHHHHHHHHHHHHHHHHhhcCCChHH
Q 019775          131 LVSVTSVEGNALAAVCDMNVHLPVERELCPFDLAPVTSTAIQMVFGDTVAIAMMGARNLTRDE  193 (336)
Q Consensus       131 vi~IT~~~~s~l~~~ad~~i~~~~~~~~~~~~~~~~~s~~~~~~l~d~l~~~~~~~~~~~~~~  193 (336)
                      ++.|++..+-            |...+        ..+.+...+.+.+|...++..+|.+++.
T Consensus       277 v~~i~~~~dl------------p~~~~--------~~~pll~~ip~Qllay~~A~~~GidPD~  319 (329)
T d1j5xa_         277 VLEVGEGGDI------------PVSND--------WKSAFLRTVPAQILGYQKAISRGISPDK  319 (329)
T ss_dssp             EEEESTTSSB------------CCCCS--------GGGGGGTTHHHHHHHHHHHHHHTCCTTS
T ss_pred             EEEECCCCCC------------CCCCc--------hhhHHHHHHHHHHHHHHHHHHcCCCCCC
Confidence            9999976431            21111        1111222344566777777777766654

>d2d4za3 d.37.1.1 (A:527-606,A:691-770) Chloride channel protein, CBS tandem {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Chloride channel protein, CBS tandem
species: Marbled electric ray (Torpedo marmorata) [TaxId: 7788]

Probab=98.20  E-value=1.2e-06  Score=67.80  Aligned_cols=56  Identities=11%  Similarity=0.062  Sum_probs=49.8

Q ss_pred             hhhhccccCCCCccccCCCcHHHHHHHHHhcCcceEEEEcCCCcEEEEeeHHHHHHHHH
Q 019775          210 KVQDVMKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRRTLK  268 (336)
Q Consensus       210 ~v~~im~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~it~~dl~~~~~  268 (336)
                      .++++|.+.+  +++++++++.+++++|.+++++++||++ +|+++|+||.+||.+.+.
T Consensus       104 ~~~~~~~~~~--~tv~~~~~l~~~~~~m~~~~v~~l~V~d-~g~lvGiIt~~Di~k~I~  159 (160)
T d2d4za3         104 FETCRIDQSP--FQLVEGTSLQKTHTLFSLLGLDRAYVTS-MGKLVGVVALAEIQAAIE  159 (160)
T ss_dssp             TTSSCEECCS--CCBCTTCBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHHHH
T ss_pred             eeeecccCCC--EEEcCCCCHHHHHHHHHHcCCeEEEEEE-CCEEEEEEEHHHHHHHhC
Confidence            4567888874  5899999999999999999999999998 689999999999998753

>d2ooxe2 d.37.1.1 (E:182-334) Uncharacterized protein C1556.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein C1556.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=98.19  E-value=2e-06  Score=66.18  Aligned_cols=58  Identities=16%  Similarity=0.193  Sum_probs=49.5

Q ss_pred             hhhhccccCCCCccccCCCcHHHHHHHHHhcCcceEEEEcCCCcEEEEeeHHHHHHHHHh
Q 019775          210 KVQDVMKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRRTLKA  269 (336)
Q Consensus       210 ~v~~im~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~it~~dl~~~~~~  269 (336)
                      .....+.+.  +.++++++++.++++.|.+++...+||+|++|+++|+||..|++.++..
T Consensus        77 ~~~~~~~~~--~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~~~lvGivT~~Dil~~~~~  134 (153)
T d2ooxe2          77 LKRPANFDG--VHTCRATDRLDGIFDAIKHSRVHRLFVVDENLKLEGILSLADILNYIIY  134 (153)
T ss_dssp             HTSCCCSSC--CCEECTTCBHHHHHHHHHHSCCSEEEEECTTCBEEEEEEHHHHHHHHHS
T ss_pred             eeeecccCC--CeEECCCCcHHHHHHhhhhceeeEEEEEcCCCEEEEEEEHHHHHHHHHc
Confidence            333444444  4578999999999999999999999999999999999999999998764

>d2nyca1 d.37.1.1 (A:181-320) Nuclear protein SNF4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Nuclear protein SNF4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.12  E-value=2.8e-06  Score=64.24  Aligned_cols=56  Identities=14%  Similarity=0.215  Sum_probs=45.7

Q ss_pred             hhhccccCCCCccccCCCcHHHHHHHHHhcCcceEEEEcCCCcEEEEeeHHHHHHHHH
Q 019775          211 VQDVMKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRRTLK  268 (336)
Q Consensus       211 v~~im~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~it~~dl~~~~~  268 (336)
                      ....+...  .+++++++++.++++.|.+++..++||+|++|+++|+||.+|+++++.
T Consensus        83 ~~~~~~~~--~~~v~~~~~l~~~~~~~~~~~~~~l~VVd~~~~l~GiIt~~Dii~~l~  138 (140)
T d2nyca1          83 RRSDDFEG--VYTCTKNDKLSTIMDNIRKARVHRFFVVDDVGRLVGVLTLSDILKYIL  138 (140)
T ss_dssp             HCC--------CEECTTSBHHHHHHHHHHHTCSEEEEECTTSBEEEEEEHHHHHHHHH
T ss_pred             hhhhcccc--cEEECCCCcHHHHHHHHHhcCeeEEEEEeCCCeEEEEEEHHHHHHHHh
Confidence            33444444  458999999999999999999999999999999999999999998874

>d2j9la1 d.37.1.1 (A:578-746) Chloride channel protein 5, ClC-5 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Chloride channel protein 5, ClC-5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.10  E-value=1.8e-06  Score=67.55  Aligned_cols=62  Identities=13%  Similarity=0.127  Sum_probs=54.9

Q ss_pred             hhhhhhhhhccccCCCCccccCCCcHHHHHHHHHhcCcceEEEEcCCCcEEEEeeHHHHHHHHHh
Q 019775          205 KSLIFKVQDVMKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEEYHLIGTFTDGDLRRTLKA  269 (336)
Q Consensus       205 ~~~~~~v~~im~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~~~~~G~it~~dl~~~~~~  269 (336)
                      .....+++++|.+.  ..++.+++++.+++++|.+++...+||++ +|+++|+||.+|+++++.+
T Consensus        96 ~~~~~~v~~im~~~--~~tv~~~~~l~~v~~~~~~~~~~~l~V~d-~g~lvGiIt~~Dil~~l~~  157 (169)
T d2j9la1          96 TPPTLKLRNILDLS--PFTVTDLTPMEIVVDIFRKLGLRQCLVTH-NGRLLGIITKKDVLKHIAQ  157 (169)
T ss_dssp             CCCCEECGGGEESS--CCEEETTSBHHHHHHHHHHHTCSEEEEEE-TTEEEEEEEHHHHHHHHHH
T ss_pred             cccccchhhhccCC--CEEECCCCcHHHHHHHHHhcCceEEEEEE-CCEEEEEEEHHHHHHHHHH
Confidence            34456789999987  45999999999999999999999999987 7899999999999998865

>d2v8qe2 d.37.1.1 (E:23-181) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.10  E-value=3.1e-06  Score=65.41  Aligned_cols=59  Identities=19%  Similarity=0.077  Sum_probs=51.7

Q ss_pred             hhhhhccccCCCCccccCCCcHHHHHHHHHhcCcceEEEEc-CCCcEEEEeeHHHHHHHHHh
Q 019775          209 FKVQDVMKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVID-EEYHLIGTFTDGDLRRTLKA  269 (336)
Q Consensus       209 ~~v~~im~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ipVvd-~~~~~~G~it~~dl~~~~~~  269 (336)
                      ..+.++|.+.  ++++++++++.+++++|.+++.+++||+| ++|+++|+||.+||++++..
T Consensus        96 ~~~~~~~~~~--~~~v~~~~~l~~v~~~m~~~~~~~v~Vvd~~~g~~~GivT~~dilk~l~~  155 (159)
T d2v8qe2          96 EVYLQDSFKP--LVCISPNASLFDAVSSLIRNKIHRLPVIDPESGNTLYILTHKRILKFLKL  155 (159)
T ss_dssp             HHHSSSSCCC--CCCBCTTSBHHHHHHHHHHHTCSCEEEECTTTCCEEEEECHHHHHHHHHH
T ss_pred             ceeeeeeccc--eEEECCCCcHHHHHHHHHHhCCeEEEEEECCCCeEEEEEeHHHHHHHHHH
Confidence            4566778776  56999999999999999999999999998 46899999999999998753

>d2riha1 d.37.1.1 (A:2-132) Uncharacterized protein PAE2072 {Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PAE2072
species: Pyrobaculum aerophilum [TaxId: 13773]

Probab=98.05  E-value=1.1e-06  Score=65.81  Aligned_cols=55  Identities=15%  Similarity=0.247  Sum_probs=50.1

Q ss_pred             hHhhhcCCCCeeeCCCccHHHHHHHhcCCCCCccEeEEE--eCCCcEEEEEehhhHhhc
Q 019775          278 TVGEMCNRSPRTIGPDAMAVEAMQKMESPPSPVQFLPVI--NRQNILIGIVTLHGLVSA  334 (336)
Q Consensus       278 ~i~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~l~Vv--~~~~~~iGiit~~di~~~  334 (336)
                      ++.++|.++|.++++++++.++++.|.++  +..++||+  |++++++|+++..|+.+.
T Consensus         2 ~V~dim~~~~v~v~~~~tl~ea~~~m~~~--~~~~~~Vv~~d~~~~~iGi~~~~dl~~~   58 (131)
T d2riha1           2 RTSELLKRPPVSLPETATIREVATELAKN--RVGLAVLTARDNPKRPVAVVSERDILRA   58 (131)
T ss_dssp             BGGGGCCSCCEEEETTCBHHHHHHHHHHH--TCSEEEEEETTEEEEEEEEEEHHHHHHH
T ss_pred             CHHHhccCCCEEECCCCcHHHHHHHHHHh--CCCcEEEEEEcCCCEEEEEEeeeccccc
Confidence            57899999999999999999999999999  99999999  445889999999999864

>d2ooxe1 d.37.1.1 (E:3-181) Uncharacterized protein C1556.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein C1556.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=97.87  E-value=3.1e-05  Score=60.73  Aligned_cols=60  Identities=10%  Similarity=0.166  Sum_probs=51.6

Q ss_pred             hhhhhhccccCCCCccccCCCcHHHHHHHHHhcCcceEEEEcCCC-----cEEEEeeHHHHHHHHHh
Q 019775          208 IFKVQDVMKPQKELPVCKEGDLIMDQLVELTSKGCGCLLVIDEEY-----HLIGTFTDGDLRRTLKA  269 (336)
Q Consensus       208 ~~~v~~im~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ipVvd~~~-----~~~G~it~~dl~~~~~~  269 (336)
                      ...+..+|.+.  ++++++++++.+++..|.+++..++||+|++|     +++|++|.+||++++..
T Consensus       106 ~~~~~~~~~~~--~i~v~~~~sl~~~~~~m~~~~~~~lpVvd~~g~~~~~~vvgiiT~~dIlk~l~~  170 (179)
T d2ooxe1         106 VERKIGAIPPE--TIYVHPMHSLMDACLAMSKSRARRIPLIDVDGETGSEMIVSVLTQYRILKFISM  170 (179)
T ss_dssp             HHHHTTCSCSS--CCCBCTTSBHHHHHHHHHHTTCSEEEEEEECTTTCCEEEEEEEEHHHHHHHHHT
T ss_pred             cceeeeecccC--ceEECCCCcHHHHHHHhhhcCceEEEEEecCCCcCCCcEEEEEeHHHHHHHHHH
Confidence            34556677766  56999999999999999999999999998654     69999999999999865

>d1c7qa_ c.80.1.2 (A:) Phosphoglucose isomerase, PGI {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: SIS domain
superfamily: SIS domain
family: Phosphoglucose isomerase, PGI
domain: Phosphoglucose isomerase, PGI
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.12  E-value=0.00098  Score=59.63  Aligned_cols=115  Identities=17%  Similarity=0.161  Sum_probs=78.5

Q ss_pred             hHHHHHHHHHHcCCCeEEEEeccchHHHHHHHHHHHHhc-------CCeeeecC---CccccccccCCCCC-CcEEEEEe
Q 019775           41 PHTLTFTQTLLKCRGTIFFTGVGKSGFVANKISQTLISL-------GIKSGFLN---PLDALHGDIGILSS-DDILVMFS  109 (336)
Q Consensus        41 ~~i~~~~~~i~~a~~~I~i~G~G~s~~~a~~~~~~l~~~-------g~~~~~~~---~~~~~~~~~~~~~~-~dlvi~iS  109 (336)
                      +.+.++++.+.+..++|+++|.|.|..=.+.+...|...       ...++++.   +...+......+++ +.++|++|
T Consensus        58 ~~i~~~a~~i~~~~~~vV~iGIGGS~LGpk~~~~aL~~~~~~~~~~~~~i~f~~~n~d~~~~~~~l~~l~~~~t~~iviS  137 (442)
T d1c7qa_          58 SRIKQAAERIRNHSDALVVIGIGGSYLGARAAIEALSHTFHNQMNDTTQIYFAGQNISSTYISHLLDVLEGKDLSINVIS  137 (442)
T ss_dssp             HHHHHHHHHHHHHCSEEEEECCGGGTHHHHHHHHHHSCTTGGGSSSSCEEEEESSSCCHHHHHHHHHHHTTCCEEEEEEC
T ss_pred             HHHHHHHHHHHhcCCEEEEEeccHHHHHHHHHHHHHHHHHhhhcccccceEeecCCCCHHHHHHHHhccCCCceeEEEec
Confidence            357777777754325899999999998777777766532       33455542   33444444444444 56788999


Q ss_pred             CCCCcHHHHHHHHHHHH----c------CCeEEEEeCCCCCccccccCE----EEEcCCC
Q 019775          110 KSGNTEELLKVVPCAKA----K------GAYLVSVTSVEGNALAAVCDM----NVHLPVE  155 (336)
Q Consensus       110 ~sG~~~~~~~~~~~ak~----~------g~~vi~IT~~~~s~l~~~ad~----~i~~~~~  155 (336)
                      .||.|.|+....+.+++    +      .-.++++|++..+++.+.++.    ++.+|..
T Consensus       138 KSg~T~ETl~~~~~~~~~l~~~~~~~~~~~~~~v~t~~~~~~l~~~a~~~~~~~f~~~~~  197 (442)
T d1c7qa_         138 KSGTTTEPAIAFRIFRDYMEKKYGKEEARKRIYVTTDRTKGALKKLADQEGYETFVIPDN  197 (442)
T ss_dssp             SSSCCHHHHHHHHHHHHHHHHHHCHHHHTTSEEEEECSSCSHHHHHHHHHTCEEEECCTT
T ss_pred             CCCCchhHHHHHHHHHHHHHHhcchhhhhhceeeccccchhhhhhhhhhhhhhhhhhhhh
Confidence            99999999887765543    1      246889999999998888753    5666654

>d1vi6a_ c.23.15.1 (A:) Ribosomal protein S2 {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Ribosomal protein S2
family: Ribosomal protein S2
domain: Ribosomal protein S2
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=96.82  E-value=0.015  Score=45.12  Aligned_cols=126  Identities=12%  Similarity=0.051  Sum_probs=76.1

Q ss_pred             HHHHHHHHH--cCCCeEEEEeccc-hHHHHHHHHHHHHhcCCeeeecCCccccccccCCCCCCcEEEEEeCCCCcHHHHH
Q 019775           43 TLTFTQTLL--KCRGTIFFTGVGK-SGFVANKISQTLISLGIKSGFLNPLDALHGDIGILSSDDILVMFSKSGNTEELLK  119 (336)
Q Consensus        43 i~~~~~~i~--~a~~~I~i~G~G~-s~~~a~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~dlvi~iS~sG~~~~~~~  119 (336)
                      +.++++.+.  +. ++|.|+|+.. ...+...++.+....-+.-..++ +..--.......+.|++|++...-+..    
T Consensus        51 L~~A~~~l~~~~~-~~ILfVgtk~~~~~~v~~~A~~~g~~~v~~RWlg-G~LTN~~~~~~~~P~~liv~dp~~d~~----  124 (193)
T d1vi6a_          51 IRVAAKFLSRYEP-SKILLVAARQYAHKPVQMFSKVVGSDYIVGRFIP-GTLTNPMLSEYREPEVVFVNDPAIDKQ----  124 (193)
T ss_dssp             HHHHHHHHTTSCG-GGEEEEECSGGGHHHHHHHHHHHCCEEEESSCCT-TTTTCTTSTTCCCCSEEEESCTTTTHH----
T ss_pred             HHHHHHHHHHhcc-CceEEeecccchHHHHHHHHHhcCCCcccccccC-CcccchHHhhcccceEEEEEcCcchHH----
Confidence            445555553  33 5899999975 34555555554433222222222 222112233446678888765554443    


Q ss_pred             HHHHHHHcCCeEEEEeCCCCCccccccCEEEEcCCCcccCCCCCCChhHHHHHHHHHHHHHHHHHhhcC
Q 019775          120 VVPCAKAKGAYLVSVTSVEGNALAAVCDMNVHLPVERELCPFDLAPVTSTAIQMVFGDTVAIAMMGARN  188 (336)
Q Consensus       120 ~~~~ak~~g~~vi~IT~~~~s~l~~~ad~~i~~~~~~~~~~~~~~~~~s~~~~~~l~d~l~~~~~~~~~  188 (336)
                      +++.|++.|+++|+|++....|  .+.|+.|.+...            |.-+.-+++.+|...+.+.++
T Consensus       125 ai~Ea~~l~IPvI~ivDTn~~p--~~vdy~IP~Ndd------------s~~Si~li~~~l~~ai~~~k~  179 (193)
T d1vi6a_         125 AVSEATAVGIPVVALCDSNNSS--ADVDLVIPTNNK------------GRRALAIVYWLLAREIAKIRG  179 (193)
T ss_dssp             HHHHHHHTTCCEEEEECTTCCC--TTCSEEEESCCS------------CHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHcCCCeeeEeccCCCC--cccceEEeCCCC------------hHHHHHHHHHHHHHHHHHHcC
Confidence            6788999999999999986555  557888776554            335556777777777666554

>d1q50a_ c.80.1.2 (A:) Phosphoglucose isomerase, PGI {Leishmania mexicana [TaxId: 5665]}

class: Alpha and beta proteins (a/b)
fold: SIS domain
superfamily: SIS domain
family: Phosphoglucose isomerase, PGI
domain: Phosphoglucose isomerase, PGI
species: Leishmania mexicana [TaxId: 5665]

Probab=96.34  E-value=0.005  Score=56.34  Aligned_cols=99  Identities=17%  Similarity=0.216  Sum_probs=72.3

Q ss_pred             hHHHHHHHHHHcCC---------CeEEEEeccchHHHHHHHHHHHHh---cCCeeeecC--CccccccccCCCCC-CcEE
Q 019775           41 PHTLTFTQTLLKCR---------GTIFFTGVGKSGFVANKISQTLIS---LGIKSGFLN--PLDALHGDIGILSS-DDIL  105 (336)
Q Consensus        41 ~~i~~~~~~i~~a~---------~~I~i~G~G~s~~~a~~~~~~l~~---~g~~~~~~~--~~~~~~~~~~~~~~-~dlv  105 (336)
                      +++.++++.|.+.+         +.|.++|.|.|..=...+...|..   .+.+++++.  |...+...+..+++ +.++
T Consensus       131 ~km~~f~~~i~~g~~~g~~g~~~~~vv~iGIGGS~LGp~~~~~al~~~~~~~~~~~fvsn~D~~~l~~~l~~Ldp~~Tlf  210 (561)
T d1q50a_         131 AQMKDFTERVRSGEWKGQTGKSIYNIVNIGIGGSDLGPVMVTEALKPFSKRDLHCFFVSNVDGTHMAEVLKQVNLEETIF  210 (561)
T ss_dssp             HHHHHHHHHHHTTCSBCTTSCBCCEEEEECCTHHHHHHHHHHHHTGGGSCSSSEEEEECCSSTHHHHHHHTTSCGGGEEE
T ss_pred             HHHHHHHHHHHhccccccccccchheeeecCCcchHHHHHHHHHHhhhhcCCceeeecCCccHHHHHHHhccCCccceeE
Confidence            46777888876431         489999999999887777777764   356788877  45555566667765 5678


Q ss_pred             EEEeCCCCcHHHHHHHHHHH--------HcCC--------eEEEEeCCCC
Q 019775          106 VMFSKSGNTEELLKVVPCAK--------AKGA--------YLVSVTSVEG  139 (336)
Q Consensus       106 i~iS~sG~~~~~~~~~~~ak--------~~g~--------~vi~IT~~~~  139 (336)
                      |++|.||.|.|++..++.++        +.|+        ..++||.+..
T Consensus       211 iv~SKSftT~ETl~n~~~~r~wl~~~~~~~~~~~~~~~~~h~vaiT~~~~  260 (561)
T d1q50a_         211 IIASKTFTTQETLTNAMSARNALMSYLKENGISTDGAVAKHFVALSTNTE  260 (561)
T ss_dssp             EEECSSSCCHHHHHHHHHHHHHHHHHHHHTTCCCTTHHHHHEEEECSCHH
T ss_pred             EeccCCccchhHHHHHHHHHHHHHHHhhhccccchhhhhhhhhhhccchH
Confidence            99999999999987665544        3343        5899998654

>d1iata_ c.80.1.2 (A:) Phosphoglucose isomerase, PGI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: SIS domain
superfamily: SIS domain
family: Phosphoglucose isomerase, PGI
domain: Phosphoglucose isomerase, PGI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.51  E-value=0.019  Score=52.39  Aligned_cols=113  Identities=13%  Similarity=0.167  Sum_probs=75.5

Q ss_pred             hHHHHHHHHHHcCC---------CeEEEEeccchHHHHHHHHHHHHhc---CCeeeecCC--ccccccccCCCCC-CcEE
Q 019775           41 PHTLTFTQTLLKCR---------GTIFFTGVGKSGFVANKISQTLISL---GIKSGFLNP--LDALHGDIGILSS-DDIL  105 (336)
Q Consensus        41 ~~i~~~~~~i~~a~---------~~I~i~G~G~s~~~a~~~~~~l~~~---g~~~~~~~~--~~~~~~~~~~~~~-~dlv  105 (336)
                      +.+.++++.+...+         +.|.++|.|.|..=...+...|...   +.+++++..  ...+...+..+++ +.++
T Consensus       126 ~~m~~f~~~i~~g~~~g~~gk~~~~VV~iGIGGS~LGp~~l~~al~~~~~~~~~~~fv~n~D~~~~~~~l~~l~~~~Tlf  205 (556)
T d1iata_         126 DKMKSFCQRVRSGDWKGYTGKTITDVINIGIGGSDLGPLMVTEALKPYSSGGPRVWYVSNIDGTHIAKTLAQLNPESSLF  205 (556)
T ss_dssp             HHHHHHHHHHHHTCSBCTTSCBCCEEEEECCGGGTHHHHHHHHHTGGGCTTCCEEEEECCSSHHHHHHHHTTCCGGGEEE
T ss_pred             HHHHHHHHHhhcchhcccccccceeEEEecCCccchhHHHHHHHhhhhcccceEEEecCCchHHHHHHHHHhcCCcceEE
Confidence            45666777775320         4799999999998777777777643   567888774  4444555556654 5688


Q ss_pred             EEEeCCCCcHHHHHHHHHHHH----cC-------CeEEEEeCCCCCcccccc---CEEEEcCC
Q 019775          106 VMFSKSGNTEELLKVVPCAKA----KG-------AYLVSVTSVEGNALAAVC---DMNVHLPV  154 (336)
Q Consensus       106 i~iS~sG~~~~~~~~~~~ak~----~g-------~~vi~IT~~~~s~l~~~a---d~~i~~~~  154 (336)
                      |++|.||.|.|+...++.+++    ++       -.++++|.+ .+.+.+..   ...+.++.
T Consensus       206 iv~SKSftT~ET~~n~~~~~~wl~~~~~~~~~~~~~~~avt~~-~~~~~~~g~~~~~if~~~~  267 (556)
T d1iata_         206 IIASKTFTTQETITNAETAKEWFLQAAKDPSAVAKHFVALSTN-TTKVKEFGIDPQNMFEFWD  267 (556)
T ss_dssp             EEECSSSCCHHHHHHHHHHHHHHHHHHCCGGGHHHHEEEEESC-HHHHHHHTCCGGGEEECCT
T ss_pred             EEecCCCCcHHHHHHHHHHHHHHHHhcCChHhhhhhhhccccc-HHHHHHhhccccceeehcc
Confidence            999999999999877766554    21       247899986 33333322   33555554

>d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Haemophilus influenzae [TaxId: 727]

Probab=94.23  E-value=0.063  Score=36.49  Aligned_cols=76  Identities=17%  Similarity=0.259  Sum_probs=41.3

Q ss_pred             HcCCCeEEEEeccchHHHHHHHHHHHHhcCCeeeecCCccc--------------cccccCCCCCCcEEEEEeCCCCcHH
Q 019775           51 LKCRGTIFFTGVGKSGFVANKISQTLISLGIKSGFLNPLDA--------------LHGDIGILSSDDILVMFSKSGNTEE  116 (336)
Q Consensus        51 ~~a~~~I~i~G~G~s~~~a~~~~~~l~~~g~~~~~~~~~~~--------------~~~~~~~~~~~dlvi~iS~sG~~~~  116 (336)
                      .+. ++|||+|.|.+...|  ++..|...|..|.-.+....              ..+...++...|++ ++| ++-..+
T Consensus         6 ~~~-~~ihfiGigG~GMs~--LA~~L~~~G~~VsGSD~~~~~~~~~L~~~Gi~v~~g~~~~~i~~~d~v-V~S-~AI~~~   80 (96)
T d1p3da1           6 RRV-QQIHFIGIGGAGMSG--IAEILLNEGYQISGSDIADGVVTQRLAQAGAKIYIGHAEEHIEGASVV-VVS-SAIKDD   80 (96)
T ss_dssp             TTC-CEEEEETTTSTTHHH--HHHHHHHHTCEEEEEESCCSHHHHHHHHTTCEEEESCCGGGGTTCSEE-EEC-TTSCTT
T ss_pred             hhC-CEEEEEEECHHHHHH--HHHHHHhCCCEEEEEeCCCChhhhHHHHCCCeEEECCccccCCCCCEE-EEC-CCcCCC
Confidence            345 699999999998665  24555555665543321000              00111234556664 444 332222


Q ss_pred             HHHHHHHHHHcCCeEE
Q 019775          117 LLKVVPCAKAKGAYLV  132 (336)
Q Consensus       117 ~~~~~~~ak~~g~~vi  132 (336)
                      -. -++.|+++|.+++
T Consensus        81 np-el~~A~~~gipii   95 (96)
T d1p3da1          81 NP-ELVTSKQKRIPVI   95 (96)
T ss_dssp             CH-HHHHHHHTTCCEE
T ss_pred             CH-HHHHHHHcCCCEE
Confidence            12 2456899999986

>d1j6ua1 c.5.1.1 (A:0-88) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Thermotoga maritima [TaxId: 2336]

Probab=93.97  E-value=0.25  Score=32.82  Aligned_cols=71  Identities=17%  Similarity=0.145  Sum_probs=42.9

Q ss_pred             eEEEEeccchHHHHHHHHHHHHhcCCeeeecCCcc--c------------cccccCCCCCCcEEEEEeC-CCCcHHHHHH
Q 019775           56 TIFFTGVGKSGFVANKISQTLISLGIKSGFLNPLD--A------------LHGDIGILSSDDILVMFSK-SGNTEELLKV  120 (336)
Q Consensus        56 ~I~i~G~G~s~~~a~~~~~~l~~~g~~~~~~~~~~--~------------~~~~~~~~~~~dlvi~iS~-sG~~~~~~~~  120 (336)
                      ||+|+|.|.+...+.  +..|...|..|.-.+-..  .            .-+...++.+.|++|.=|. +.++++    
T Consensus         3 ~ihfiGIgG~GMs~L--A~~L~~~G~~VsGSD~~~~~~t~~L~~~Gi~i~~gh~~~~i~~~d~vV~SsAI~~~npe----   76 (89)
T d1j6ua1           3 KIHFVGIGGIGMSAV--ALHEFSNGNDVYGSNIEETERTAYLRKLGIPIFVPHSADNWYDPDLVIKTPAVRDDNPE----   76 (89)
T ss_dssp             EEEEETTTSHHHHHH--HHHHHHTTCEEEEECSSCCHHHHHHHHTTCCEESSCCTTSCCCCSEEEECTTCCTTCHH----
T ss_pred             EEEEEeECHHHHHHH--HHHHHhCCCeEEEEeCCCChhHHHHHHCCCeEEeeecccccCCCCEEEEecCcCCCCHH----
Confidence            799999999887773  566666666665443110  0            0112234566777654443 334444    


Q ss_pred             HHHHHHcCCeEE
Q 019775          121 VPCAKAKGAYLV  132 (336)
Q Consensus       121 ~~~ak~~g~~vi  132 (336)
                      ++.|+++|.++.
T Consensus        77 l~~A~~~gIpv~   88 (89)
T d1j6ua1          77 IVRARMERVPIE   88 (89)
T ss_dssp             HHHHHHTTCCEE
T ss_pred             HHHHHHcCCCcc
Confidence            567899999886

>d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD
species: Escherichia coli [TaxId: 562]

Probab=93.77  E-value=0.043  Score=37.07  Aligned_cols=73  Identities=15%  Similarity=0.275  Sum_probs=43.2

Q ss_pred             CeEEEEeccchHHHHHHHHHHHHhcCCeeeecCCccccc--cccCC-------------CCCCcEEEEEeCCCCcHHHHH
Q 019775           55 GTIFFTGVGKSGFVANKISQTLISLGIKSGFLNPLDALH--GDIGI-------------LSSDDILVMFSKSGNTEELLK  119 (336)
Q Consensus        55 ~~I~i~G~G~s~~~a~~~~~~l~~~g~~~~~~~~~~~~~--~~~~~-------------~~~~dlvi~iS~sG~~~~~~~  119 (336)
                      ++|.++|.|.|...+   +..|.+.|.++....+.....  .....             +..-|++|+  .+|-.. -..
T Consensus         6 K~v~ViGlG~sG~s~---a~~L~~~g~~v~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~--SPGi~~-~~~   79 (93)
T d2jfga1           6 KNVVIIGLGLTGLSC---VDFFLARGVTPRVMDTRMTPPGLDKLPEAVERHTGSLNDEWLMAADLIVA--SPGIAL-AHP   79 (93)
T ss_dssp             CCEEEECCSHHHHHH---HHHHHHTTCCCEEEESSSSCTTGGGSCTTSCEEESBCCHHHHHHCSEEEE--CTTSCT-TSH
T ss_pred             CEEEEEeECHHHHHH---HHHHHHCCCEEEEeeCCcCchhHHHHhhccceeecccchhhhccCCEEEE--CCCCCC-CCH
Confidence            589999999987543   566777788888766422211  11111             111233333  344433 346


Q ss_pred             HHHHHHHcCCeEEE
Q 019775          120 VVPCAKAKGAYLVS  133 (336)
Q Consensus       120 ~~~~ak~~g~~vi~  133 (336)
                      .++.|+++|++||.
T Consensus        80 ~~~~a~~~gi~iiG   93 (93)
T d2jfga1          80 SLSAAADAGIEIVG   93 (93)
T ss_dssp             HHHHHHHTTCEEEC
T ss_pred             HHHHHHHcCCCeEC
Confidence            77889999999873

>d2gy9b1 c.23.15.1 (B:8-225) Ribosomal protein S2 {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Ribosomal protein S2
family: Ribosomal protein S2
domain: Ribosomal protein S2
species: Escherichia coli [TaxId: 562]

Probab=92.83  E-value=0.47  Score=37.19  Aligned_cols=67  Identities=12%  Similarity=0.177  Sum_probs=46.9

Q ss_pred             CCcEEEEEeCCCCcHHHHHHHHHHHHcCCeEEEEeCCCCCccccccCEEEEcCCCcccCCCCCCChhHHHHHHHHHHHHH
Q 019775          101 SDDILVMFSKSGNTEELLKVVPCAKAKGAYLVSVTSVEGNALAAVCDMNVHLPVERELCPFDLAPVTSTAIQMVFGDTVA  180 (336)
Q Consensus       101 ~~dlvi~iS~sG~~~~~~~~~~~ak~~g~~vi~IT~~~~s~l~~~ad~~i~~~~~~~~~~~~~~~~~s~~~~~~l~d~l~  180 (336)
                      ..|++|++....+.    .++++|.+.|+++|+|.+...+|  ...|+.|  |+...          |.-+.-+++..|.
T Consensus       149 lPd~vii~d~~~~~----~ai~Ea~~l~IP~I~ivDTn~dp--~~idypI--P~Ndd----------s~~sI~li~~~l~  210 (218)
T d2gy9b1         149 LPDALFVIDADHEH----IAIKEANNLGIPVFAIVDTNSDP--DGVDFVI--PGNDD----------AIRAVTLYLGAVA  210 (218)
T ss_dssp             CCCEEEESCTTTTH----HHHHHHHHTTCCEEECCCSSSCG--GGCTEEC--CSCSS----------CHHHHHHHHHHHH
T ss_pred             CCceeeeccccccH----HHHHHHHHcCCCEEEEeeCCCCC--ccCceee--ecCCc----------HHHHHHHHHHHHH
Confidence            47898888876543    34788999999999999986654  4566664  44444          4455567777776


Q ss_pred             HHHHh
Q 019775          181 IAMMG  185 (336)
Q Consensus       181 ~~~~~  185 (336)
                      ..+.+
T Consensus       211 ~ai~~  215 (218)
T d2gy9b1         211 ATVRE  215 (218)
T ss_dssp             HHHHT
T ss_pred             HHHHh
Confidence            66654

>d1ytla1 c.31.1.6 (A:17-174) Acetyl-CoA decarbonylase/synthase complex epsilon subunit 2, ACDE2 {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: DHS-like NAD/FAD-binding domain
superfamily: DHS-like NAD/FAD-binding domain
family: ACDE2-like
domain: Acetyl-CoA decarbonylase/synthase complex epsilon subunit 2, ACDE2
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=91.63  E-value=0.53  Score=34.83  Aligned_cols=93  Identities=8%  Similarity=0.051  Sum_probs=58.6

Q ss_pred             hHHHHHHHHHHcCCCeEEEEeccchHHHHHHHHHHHHhcCCeeeecCC-------------ccccc--------c-----
Q 019775           41 PHTLTFTQTLLKCRGTIFFTGVGKSGFVANKISQTLISLGIKSGFLNP-------------LDALH--------G-----   94 (336)
Q Consensus        41 ~~i~~~~~~i~~a~~~I~i~G~G~s~~~a~~~~~~l~~~g~~~~~~~~-------------~~~~~--------~-----   94 (336)
                      +++++++++|.+|++-++++|.|.... ..++...+.+.+.++.....             .+...        .     
T Consensus         7 e~~~~~a~~i~~AkrPvii~G~g~~~~-~~e~~~~~~~~~ipv~~T~~~~~~~~gkg~~~~~~~~~~G~~g~~g~~~~n~   85 (158)
T d1ytla1           7 EKGKPVANMIKKAKRPLLIVGPDMTDE-MFERVKKFVEKDITVVATGSAITRFIDAGLGEKVNYAVLHELTQFLLDPDWK   85 (158)
T ss_dssp             CCHHHHHHHHHHCSSEEEEECSCCCHH-HHHHHHHHHTSSSEEEEETTHHHHHHHTTCGGGSEEECHHHHHHHHHSTTCC
T ss_pred             HHHHHHHHHHHhCCCCEEEECcChHHh-HHHHHHHHHHhCcCEEecccccccccccCCCCCCCccccccccccCcHHHHH
Confidence            578999999999988999999998764 44567777888988866421             11110        0     


Q ss_pred             ccCCCCCCcEEEEEeCCCC-cHHHHHHHHHHHHcCCeEEEEe
Q 019775           95 DIGILSSDDILVMFSKSGN-TEELLKVVPCAKAKGAYLVSVT  135 (336)
Q Consensus        95 ~~~~~~~~dlvi~iS~sG~-~~~~~~~~~~ak~~g~~vi~IT  135 (336)
                      ....+.+-||+|++-.+=. ........+.. ..++++|.|-
T Consensus        86 a~~~~~~aDLvi~iG~~~~~~~~~~~~~~~~-~~~~k~I~Id  126 (158)
T d1ytla1          86 GFDGQGNYDLVLMLGSIYYHGSQMLAAIKNF-APHIRALAID  126 (158)
T ss_dssp             CTTSSCCCSEEEEESCCHHHHHHHHHHHHHH-CTTCEEEECS
T ss_pred             HhhcccCcCEEEEECCcccchhhcccccccc-CCCCeEEEEc
Confidence            0112357899999975422 12222223332 3568888774

>d1q6za1 c.31.1.3 (A:182-341) Benzoylformate decarboxylase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: DHS-like NAD/FAD-binding domain
superfamily: DHS-like NAD/FAD-binding domain
family: Pyruvate oxidase and decarboxylase, middle domain
domain: Benzoylformate decarboxylase
species: Pseudomonas putida [TaxId: 303]

Probab=91.42  E-value=0.22  Score=37.02  Aligned_cols=50  Identities=8%  Similarity=-0.072  Sum_probs=38.9

Q ss_pred             cCChhHHHHHHHHHHcCCCeEEEEeccchH-HHHHHHHHHHHhcCCeeeec
Q 019775           37 HLSLPHTLTFTQTLLKCRGTIFFTGVGKSG-FVANKISQTLISLGIKSGFL   86 (336)
Q Consensus        37 ~~~~~~i~~~~~~i~~a~~~I~i~G~G~s~-~~a~~~~~~l~~~g~~~~~~   86 (336)
                      +++.+++++++++|.+|++-+++.|.|... .....+.....++|.+++..
T Consensus         3 ~~~~~~ld~~~~~l~~A~rPvii~G~g~~~~~~~~~l~~lae~l~~pv~~t   53 (160)
T d1q6za1           3 RLNDQDLDILVKALNSASNPAIVLGPDVDAANANADCVMLAERLKAPVWVA   53 (160)
T ss_dssp             CCCHHHHHHHHHHHHHCSSCEEEECHHHHHTTCHHHHHHHHHHHTCCEEEC
T ss_pred             CCCHHHHHHHHHHHHhCCCEEEEECcCccccccchHHHHHHHhcCceEEee
Confidence            478899999999999998788888988654 45566666666778877654

>d2jioa2 c.81.1.1 (A:4-600) Periplasmic nitrate reductase alpha chain {Desulfovibrio desulfuricans [TaxId: 876]}

class: Alpha and beta proteins (a/b)
fold: Formate dehydrogenase/DMSO reductase, domains 1-3
superfamily: Formate dehydrogenase/DMSO reductase, domains 1-3
family: Formate dehydrogenase/DMSO reductase, domains 1-3
domain: Periplasmic nitrate reductase alpha chain
species: Desulfovibrio desulfuricans [TaxId: 876]

Probab=91.26  E-value=0.5  Score=43.08  Aligned_cols=102  Identities=11%  Similarity=0.151  Sum_probs=60.4

Q ss_pred             CeEEEEeccchHHHHHHHHHHHHh--cCCeeeecCCcc----------------ccccccCCCCCCcEEEEEeCCCCcH-
Q 019775           55 GTIFFTGVGKSGFVANKISQTLIS--LGIKSGFLNPLD----------------ALHGDIGILSSDDILVMFSKSGNTE-  115 (336)
Q Consensus        55 ~~I~i~G~G~s~~~a~~~~~~l~~--~g~~~~~~~~~~----------------~~~~~~~~~~~~dlvi~iS~sG~~~-  115 (336)
                      +.|.++|.|....-..++..+|..  +|-+........                ........+..-|++|++....... 
T Consensus        99 ~si~~~~~~~~~~~~~~~~~~~~~~~~gt~n~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~a~~il~~G~n~~~~~  178 (597)
T d2jioa2          99 NSVAWYGSGQCLTEESYVANKIFKGGFGTNNVDGNPRLCMASAVGGYVTSFGKDEPMGTYADIDQATCFFIIGSNTSEAH  178 (597)
T ss_dssp             GGEEEEECTTSCHHHHHHHHHHHHHTTCCCCEEEGGGGTTHHHHHHHHHHHSSCSCSSCGGGGGTCSEEEEESCCHHHHS
T ss_pred             CeEEEEecCCcccHHHHHHHHHhhcccCCCCcccccccccccchhhhhhhcccccCCcchhhcccceEEEEecccccccC
Confidence            579888887766555666655543  343322211100                0001122345567888885543221 


Q ss_pred             -HHH--HHHHHHHHcCCeEEEEeCCCCCccccccCEEEEcCCCcc
Q 019775          116 -ELL--KVVPCAKAKGAYLVSVTSVEGNALAAVCDMNVHLPVERE  157 (336)
Q Consensus       116 -~~~--~~~~~ak~~g~~vi~IT~~~~s~l~~~ad~~i~~~~~~~  157 (336)
                       ...  ...+.++++|+++|+|-.. .++.+..||..+.+.-+++
T Consensus       179 p~~~~~~~~~~~~~~G~kliviDPr-~t~ta~~Ad~~l~irPGtD  222 (597)
T d2jioa2         179 PVLFRRIARRKQVEPGVKIIVADPR-RTNTSRIADMHVAFRPGTD  222 (597)
T ss_dssp             HHHHHHHHHHHHHCTTCEEEEECSB-CCGGGGGCSEEECCCTTCH
T ss_pred             CcHHHHHHHHHHhcCCCEEEecCCC-CCchHHhhccccccCCcch
Confidence             111  2245678899999999875 6677899999998877665

>d2d59a1 c.2.1.8 (A:4-142) Hypothetical protein PH1109 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Hypothetical protein PH1109
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=90.84  E-value=1  Score=32.37  Aligned_cols=85  Identities=20%  Similarity=0.224  Sum_probs=59.2

Q ss_pred             HHHHcCCCeEEEEeccch-HHHHHHHHHHHHhcCCeeeecCCc-ccccc-----ccCCC-CCCcEEEEEeCCCCcHHHHH
Q 019775           48 QTLLKCRGTIFFTGVGKS-GFVANKISQTLISLGIKSGFLNPL-DALHG-----DIGIL-SSDDILVMFSKSGNTEELLK  119 (336)
Q Consensus        48 ~~i~~a~~~I~i~G~G~s-~~~a~~~~~~l~~~g~~~~~~~~~-~~~~~-----~~~~~-~~~dlvi~iS~sG~~~~~~~  119 (336)
                      +.+.++ ++|.++|.... ...+......|...|++++.+++. ..+..     .+..+ .+-|+++++-   ..+.+.+
T Consensus        14 ~~L~~~-ksIAVVGaS~~~~~~g~~v~~~L~~~g~~v~pVnP~~~~i~G~~~~~sl~dlp~~iD~v~i~v---p~~~~~~   89 (139)
T d2d59a1          14 EILTRY-KKIALVGASPKPERDANIVMKYLLEHGYDVYPVNPKYEEVLGRKCYPSVLDIPDKIEVVDLFV---KPKLTME   89 (139)
T ss_dssp             HHHHHC-CEEEEETCCSCTTSHHHHHHHHHHHTTCEEEEECTTCSEETTEECBSSGGGCSSCCSEEEECS---CHHHHHH
T ss_pred             HHHhcC-CeEEEEeecCCCCCchHHHHHHHHHCCCEEEEECCcccccCCCcccccccccCccceEEEEEe---CHHHHHH
Confidence            357788 59999998753 467777788888899999998863 22221     12222 3457766653   4567888


Q ss_pred             HHHHHHHcCCeEEEEeC
Q 019775          120 VVPCAKAKGAYLVSVTS  136 (336)
Q Consensus       120 ~~~~ak~~g~~vi~IT~  136 (336)
                      +++.+.+.|++.+.+-.
T Consensus        90 ~~~e~~~~g~k~v~~~~  106 (139)
T d2d59a1          90 YVEQAIKKGAKVVWFQY  106 (139)
T ss_dssp             HHHHHHHHTCSEEEECT
T ss_pred             HHHHHHHhCCCEEEEec
Confidence            88899999999877643

>d2iv2x2 c.81.1.1 (X:1-564) Formate dehydrogenase H {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Formate dehydrogenase/DMSO reductase, domains 1-3
superfamily: Formate dehydrogenase/DMSO reductase, domains 1-3
family: Formate dehydrogenase/DMSO reductase, domains 1-3
domain: Formate dehydrogenase H
species: Escherichia coli [TaxId: 562]

Probab=90.76  E-value=1.7  Score=38.90  Aligned_cols=59  Identities=19%  Similarity=0.236  Sum_probs=44.2

Q ss_pred             CCCCCcEEEEEeCCCC--cHHHHHHHHHHHHcCCeEEEEeCCCCCccccccCEEEEcCCCcc
Q 019775           98 ILSSDDILVMFSKSGN--TEELLKVVPCAKAKGAYLVSVTSVEGNALAAVCDMNVHLPVERE  157 (336)
Q Consensus        98 ~~~~~dlvi~iS~sG~--~~~~~~~~~~ak~~g~~vi~IT~~~~s~l~~~ad~~i~~~~~~~  157 (336)
                      .+..-|++|++.....  .......++.++++|+++|+|-.. .+..+..||..+.+.-+.+
T Consensus       163 d~~~ad~il~~G~n~~~~~~~~~~~~~~a~~~G~kvvvidPr-~t~ta~~Ad~~l~i~PGtD  223 (564)
T d2iv2x2         163 EIDNTDLVFVFGYNPADSHPIVANHVINAKRNGAKIIVCDPR-KIETARIADMHIALKNGSN  223 (564)
T ss_dssp             GGGGCSEEEEESCCHHHHCHHHHHHHHHHHHTTCEEEEECSS-CCHHHHTCSEEECCCTTCH
T ss_pred             eeecCCEEEECCcccccccchHHHHHHHHHHCCCEEEEECCC-CCchHHHhhhhhhcccCcH
Confidence            4567788888865432  233455578899999999999975 6777889999998877666

>d2ji7a1 c.31.1.3 (A:195-369) Oxalyl-CoA decarboxylase {Oxalobacter formigenes [TaxId: 847]}

class: Alpha and beta proteins (a/b)
fold: DHS-like NAD/FAD-binding domain
superfamily: DHS-like NAD/FAD-binding domain
family: Pyruvate oxidase and decarboxylase, middle domain
domain: Oxalyl-CoA decarboxylase
species: Oxalobacter formigenes [TaxId: 847]

Probab=90.71  E-value=0.13  Score=38.97  Aligned_cols=49  Identities=10%  Similarity=0.087  Sum_probs=36.7

Q ss_pred             ChhHHHHHHHHHHcCCCeEEEEeccchHH-HHHHHHHHHHhcCCeeeecC
Q 019775           39 SLPHTLTFTQTLLKCRGTIFFTGVGKSGF-VANKISQTLISLGIKSGFLN   87 (336)
Q Consensus        39 ~~~~i~~~~~~i~~a~~~I~i~G~G~s~~-~a~~~~~~l~~~g~~~~~~~   87 (336)
                      +.+.+++++++|.+|++-++++|.|.... ....+......+|.+++...
T Consensus         5 ~~~~l~~a~~~L~~A~rPvii~G~g~~~~~a~~~l~~lae~~~iPv~~t~   54 (175)
T d2ji7a1           5 AEDAIARAADLIKNAKRPVIMLGKGAAYAQCDDEIRALVEETGIPFLPMG   54 (175)
T ss_dssp             CHHHHHHHHHHHHTCSSCEEEECHHHHHTTCHHHHHHHHHHHTCCEEECT
T ss_pred             CHHHHHHHHHHHHhCCCEEEEECCCccccccHHHHHHHhhhceeeeeccc
Confidence            46889999999999987888889886543 34555555556799997654

>d1u9ya1 c.61.1.2 (A:1-155) Phosphoribosylpyrophosphate synthetase {Methanocaldococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: PRTase-like
superfamily: PRTase-like
family: Phosphoribosylpyrophosphate synthetase-like
domain: Phosphoribosylpyrophosphate synthetase
species: Methanocaldococcus jannaschii [TaxId: 2190]

Probab=90.41  E-value=0.43  Score=35.26  Aligned_cols=79  Identities=9%  Similarity=0.148  Sum_probs=54.5

Q ss_pred             EEEeccchHHHHHHHHHHHHhc--CCeeeecCCccccccccCCCCCCcEEEEEeCCCCcHHHHH---HHHHHHHcCCeE-
Q 019775           58 FFTGVGKSGFVANKISQTLISL--GIKSGFLNPLDALHGDIGILSSDDILVMFSKSGNTEELLK---VVPCAKAKGAYL-  131 (336)
Q Consensus        58 ~i~G~G~s~~~a~~~~~~l~~~--g~~~~~~~~~~~~~~~~~~~~~~dlvi~iS~sG~~~~~~~---~~~~ak~~g~~v-  131 (336)
                      .+++..+|..+|+.++..|..-  ...+.-.++++........+..++++|+-|....+..+.+   ++..+|+.|++- 
T Consensus         2 ~i~~gs~~~~La~~ia~~lg~~l~~~~~~~F~DGE~~v~i~~~vrg~~vvvi~s~~~~~d~lmelll~~da~~~~~a~~I   81 (155)
T d1u9ya1           2 IVVSGSQSQNLAFKVAKLLNTKLTRVEYKRFPDNEIYVRIVDEINDDEAVIINTQKNQNDAIVETILLCDALRDEGVKKI   81 (155)
T ss_dssp             EEEECTTCHHHHHHHHHHTTCCEECEEEEECTTCCEEEEECSCCCSSEEEEECCCSSHHHHHHHHHHHHHHHHTTTCCEE
T ss_pred             EEEECCCCHHHHHHHHHHhCCCceeeEEEEcCCCCcceeeccccCCceeEEEecccccchHHHHHHHHHHHHHHhCCcce
Confidence            4677778899999999998744  4444556777776666667777888777776554454444   567889898764 


Q ss_pred             EEEeC
Q 019775          132 VSVTS  136 (336)
Q Consensus       132 i~IT~  136 (336)
                      .++..
T Consensus        82 ~~ViP   86 (155)
T d1u9ya1          82 TLVAP   86 (155)
T ss_dssp             EEECS
T ss_pred             EEecc
Confidence            44443

>d1tifa_ d.15.8.1 (A:) Translation initiation factor IF3, N-terminal domain {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Translation initiation factor IF3, N-terminal domain
family: Translation initiation factor IF3, N-terminal domain
domain: Translation initiation factor IF3, N-terminal domain
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=89.33  E-value=0.24  Score=31.77  Aligned_cols=45  Identities=13%  Similarity=0.198  Sum_probs=38.1

Q ss_pred             EEEEEeCCCCc---HHHHHHHHHHHHcCCeEEEEeCCCCCccccccCE
Q 019775          104 ILVMFSKSGNT---EELLKVVPCAKAKGAYLVSVTSVEGNALAAVCDM  148 (336)
Q Consensus       104 lvi~iS~sG~~---~~~~~~~~~ak~~g~~vi~IT~~~~s~l~~~ad~  148 (336)
                      -+.++...|+.   -...++++.|++.|..+|.|+.+...|++++.||
T Consensus        13 ~VrlI~~~G~~lGv~~~~eAl~~A~~~glDLV~vs~~a~PPVcKi~dy   60 (76)
T d1tifa_          13 EVRLIDQNGDQLGIKSKQEALEIAARRNLDLVLVAPNAKPPVCRIMDY   60 (76)
T ss_dssp             EEEEECTTSCEEEEEEHHHHHHHHHHTTCEEEEEETTSSSCEEEEECH
T ss_pred             EEEEECCCCcEeCeecHHHHHHHHHHcCCCEEEecCCCCCCEEEEEcc
Confidence            45567777774   5678999999999999999999999999888775

>d1dkua1 c.61.1.2 (A:8-166) Phosphoribosylpyrophosphate synthetase {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: PRTase-like
superfamily: PRTase-like
family: Phosphoribosylpyrophosphate synthetase-like
domain: Phosphoribosylpyrophosphate synthetase
species: Bacillus subtilis [TaxId: 1423]

Probab=89.28  E-value=1.1  Score=33.07  Aligned_cols=79  Identities=15%  Similarity=0.123  Sum_probs=55.9

Q ss_pred             EEEEeccchHHHHHHHHHHHHh-cCC-eeeecCCccccccccCCCCCCcEEEEEeCCCCc-HHHHH---HHHHHHHcCCe
Q 019775           57 IFFTGVGKSGFVANKISQTLIS-LGI-KSGFLNPLDALHGDIGILSSDDILVMFSKSGNT-EELLK---VVPCAKAKGAY  130 (336)
Q Consensus        57 I~i~G~G~s~~~a~~~~~~l~~-~g~-~~~~~~~~~~~~~~~~~~~~~dlvi~iS~sG~~-~~~~~---~~~~ak~~g~~  130 (336)
                      +-+++..+|..+|+.++..|.. ++. .+.-.++++.......++...|++|+-|.++.. ..+.+   ++..+|+.|++
T Consensus         2 m~i~~gss~~~La~~ia~~Lg~~l~~~~~~~FpDGE~~v~i~~~vrg~dv~ivqs~~~~~nd~lmelll~~~a~k~~~A~   81 (159)
T d1dkua1           2 LKIFSLNSNPELAKEIADIVGVQLGKCSVTRFSDGEVQINIEESIRGCDCYIIQSTSDPVNEHIMELLIMVDALKRASAK   81 (159)
T ss_dssp             EEEEECSSCHHHHHHHHHHHTCCCCCEEEEECTTSCEEEEECSCCTTCEEEEECCCCSSHHHHHHHHHHHHHHHHHTTCS
T ss_pred             eEEEeCCCCHHHHHHHHHHhCCCccceEEEEcCCCCEEEEeecCCCCCceEEEecCCCCcHHHHHHHHHHHHHHHHcCCc
Confidence            3456666778999999999973 333 334477887777777778888999988887763 43444   46888988987


Q ss_pred             EEE-Ee
Q 019775          131 LVS-VT  135 (336)
Q Consensus       131 vi~-IT  135 (336)
                      -|. |-
T Consensus        82 ~i~~Vi   87 (159)
T d1dkua1          82 TINIVI   87 (159)
T ss_dssp             EEEEEE
T ss_pred             ceEEee
Confidence            554 44

>d1ja1a2 c.23.5.2 (A:63-239) NADPH-cytochrome p450 reductase, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Flavoproteins
family: Cytochrome p450 reductase N-terminal domain-like
domain: NADPH-cytochrome p450 reductase, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=89.20  E-value=0.86  Score=34.34  Aligned_cols=73  Identities=14%  Similarity=0.201  Sum_probs=46.8

Q ss_pred             CeEEE-Eec--cchHHHHHHHHHHHHhcCCeeeecCCccccccc---cCCCCCCcEEEEEeCCCCc---HHHHHHHHHHH
Q 019775           55 GTIFF-TGV--GKSGFVANKISQTLISLGIKSGFLNPLDALHGD---IGILSSDDILVMFSKSGNT---EELLKVVPCAK  125 (336)
Q Consensus        55 ~~I~i-~G~--G~s~~~a~~~~~~l~~~g~~~~~~~~~~~~~~~---~~~~~~~dlvi~iS~sG~~---~~~~~~~~~ak  125 (336)
                      ++|.| ||+  |.+..+|+.++..+.+.|..+....-.+.-...   ......+-++|++|..|.-   .+..+..+.++
T Consensus        16 k~i~IlygS~tGnae~~A~~l~~~l~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~ST~g~G~~P~n~~~F~~~L~   95 (177)
T d1ja1a2          16 RNIIVFYGSQTGTAEEFANRLSKDAHRYGMRGMSADPEEYDLADLSSLPEIDKSLVVFCMATYGEGDPTDNAQDFYDWLQ   95 (177)
T ss_dssp             CCEEEEEECSSSHHHHHHHHHHHHGGGGTCCEEEECGGGSCGGGGGGGGGSTTCEEEEEEEEETTTEECGGGHHHHHHHH
T ss_pred             CeEEEEEECCchHHHHHHHHHHHHHHHCCCceEEeeccccchhhhhhhhccccceEEEEEeccCCCCCCHhHHHHHHHHH
Confidence            34544 686  779999999999999999998876532211111   1222344466677887653   45666677777


Q ss_pred             Hc
Q 019775          126 AK  127 (336)
Q Consensus       126 ~~  127 (336)
                      +.
T Consensus        96 ~~   97 (177)
T d1ja1a2          96 ET   97 (177)
T ss_dssp             HC
T ss_pred             hc
Confidence            64

>d1h0ha2 c.81.1.1 (A:1-812) Tungsten containing formate dehydrogenase, large subunit {Desulfovibrio gigas [TaxId: 879]}

class: Alpha and beta proteins (a/b)
fold: Formate dehydrogenase/DMSO reductase, domains 1-3
superfamily: Formate dehydrogenase/DMSO reductase, domains 1-3
family: Formate dehydrogenase/DMSO reductase, domains 1-3
domain: Tungsten containing formate dehydrogenase, large subunit
species: Desulfovibrio gigas [TaxId: 879]

Probab=88.04  E-value=2.2  Score=40.13  Aligned_cols=126  Identities=21%  Similarity=0.189  Sum_probs=76.0

Q ss_pred             eEEEEeccchHHHHHHHHHHHH-hcCCeeeecCC----------------ccccccccCCCCCCcEEEEEeCCCC--cHH
Q 019775           56 TIFFTGVGKSGFVANKISQTLI-SLGIKSGFLNP----------------LDALHGDIGILSSDDILVMFSKSGN--TEE  116 (336)
Q Consensus        56 ~I~i~G~G~s~~~a~~~~~~l~-~~g~~~~~~~~----------------~~~~~~~~~~~~~~dlvi~iS~sG~--~~~  116 (336)
                      .+..+|.+....-..++..+|. .+|-+.+....                ...+......+..-|+++++.....  .+-
T Consensus       122 ~i~~~gs~~~~ne~~~l~~kf~~~lGt~ni~~~~~iC~~~~~~gl~~tfG~g~~tn~~~Di~nad~Il~~G~Npae~~p~  201 (812)
T d1h0ha2         122 GIASVGSAAMDNEECWIYQAWLRSLGLFYIEHQARICHSATVAALAESYGRGAMTNHWIDLKNSDVILMMGSNPAENHPI  201 (812)
T ss_dssp             SEEEECCTTSCHHHHHHHHHHHHHTTBCCEECTHHHHTHHHHHHHHHHHSCCSCSSCTGGGGGCSEEEEESCCHHHHSTT
T ss_pred             ceEEEecCCcCcHHHHHHHHHHHHcCCCCcCCCCCcchHHHHHHHHHHcCCCCCCCCHHHHhcCcEEEEeccccccchhh
Confidence            5777777765555555555544 45654332110                0011112233556788888854322  133


Q ss_pred             HHHHHHHHHHcCCeEEEEeCCCCCccccccCEEEEcCCCcccCCCCCCChhHHHHHHHHHHHHHHHHHhhcCCChHHHhh
Q 019775          117 LLKVVPCAKAKGAYLVSVTSVEGNALAAVCDMNVHLPVERELCPFDLAPVTSTAIQMVFGDTVAIAMMGARNLTRDEYAA  196 (336)
Q Consensus       117 ~~~~~~~ak~~g~~vi~IT~~~~s~l~~~ad~~i~~~~~~~~~~~~~~~~~s~~~~~~l~d~l~~~~~~~~~~~~~~~~~  196 (336)
                      ...-+..++++|+++|.|-.. .+..+..||..+.+..+++               ..++..++..++++...+. +|.+
T Consensus       202 ~~~~i~~a~~rGaklIvVDPR-~t~TAa~AD~wipIrPGTD---------------~All~gmi~~Il~~~l~d~-dfv~  264 (812)
T d1h0ha2         202 SFKWVMRAKDKGATLIHVDPR-YTRTSTKCDLYAPLRSGSD---------------IAFLNGMTKYILEKELYFK-DYVV  264 (812)
T ss_dssp             HHHHHHHHHHTTCEEEEECSS-CCTTGGGCSEEECCCTTCH---------------HHHHHHHHHHHHHTTCSCH-HHHH
T ss_pred             HHHHHHHhhhccccceecccc-ccchhhhcchhhhcCCCcc---------------HHHHHHHHHHHHHcCCccH-HHHH
Confidence            455678899999999999765 6677889999999888766               5566666666666654443 4444


Q ss_pred             cC
Q 019775          197 NH  198 (336)
Q Consensus       197 ~~  198 (336)
                      .+
T Consensus       265 ~y  266 (812)
T d1h0ha2         265 NY  266 (812)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>d1ogya2 c.81.1.1 (A:12-681) Periplasmic nitrate reductase alpha chain {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: Formate dehydrogenase/DMSO reductase, domains 1-3
superfamily: Formate dehydrogenase/DMSO reductase, domains 1-3
family: Formate dehydrogenase/DMSO reductase, domains 1-3
domain: Periplasmic nitrate reductase alpha chain
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=87.80  E-value=0.85  Score=42.14  Aligned_cols=125  Identities=7%  Similarity=0.067  Sum_probs=71.7

Q ss_pred             CeEEEEeccchHHHHHHHHHHHHhc--CCeeeecCCcccc----------------ccccCCCCCCcEEEEEeCCCCcHH
Q 019775           55 GTIFFTGVGKSGFVANKISQTLISL--GIKSGFLNPLDAL----------------HGDIGILSSDDILVMFSKSGNTEE  116 (336)
Q Consensus        55 ~~I~i~G~G~s~~~a~~~~~~l~~~--g~~~~~~~~~~~~----------------~~~~~~~~~~dlvi~iS~sG~~~~  116 (336)
                      +.|.++|.|.......++..+|.+.  |-+.+........                ......+..-|++|++........
T Consensus       103 ~si~~~~~g~~~~~~~~~~~~~~~~~~gt~n~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~D~~~ad~il~~G~N~~~~~  182 (670)
T d1ogya2         103 EAVGMFGSGQWTIWEGYAASKLMRAGFRSNNLDPNARHCMASAATAFMRTFGMDEPMGCYDDFEAADAFVLWGSNMAEMH  182 (670)
T ss_dssp             GGEEEEECTTSCHHHHHHHHHHHHTTSCCCCEEETHHHHTHHHHHHHHHHHSSCSCSSCTTHHHHCSEEEEESCCHHHHS
T ss_pred             CEEEEEcCCcchhHHHHHHHHHHHHhCCCCccCCCcccccchHHHHhhhccccCCCcCCHHHHhcCceEEEEccCchhhC
Confidence            5799999888777777777777664  3322222110000                000111233578888865433221


Q ss_pred             H---HHH-HHHHHHcCCeEEEEeCCCCCccccccCEEEEcCCCcccCCCCCCChhHHHHHHHHHHHHHHHHHhhcCCChH
Q 019775          117 L---LKV-VPCAKAKGAYLVSVTSVEGNALAAVCDMNVHLPVERELCPFDLAPVTSTAIQMVFGDTVAIAMMGARNLTRD  192 (336)
Q Consensus       117 ~---~~~-~~~ak~~g~~vi~IT~~~~s~l~~~ad~~i~~~~~~~~~~~~~~~~~s~~~~~~l~d~l~~~~~~~~~~~~~  192 (336)
                      .   ... .+.++++|+++|+|-. ..+..+..||..+.+.-+++               ..++..++..++++...+ +
T Consensus       183 ~~~~~~~~~~~~~~~g~kiividp-r~t~ta~~Ad~~l~irPGTD---------------~Al~la~~~vii~~~l~D-~  245 (670)
T d1ogya2         183 PILWSRLTDRRLSHEHVRVAVLST-FTHRSSDLSDTPIIFRPGTD---------------RAILNYIAHHIISTGRVN-R  245 (670)
T ss_dssp             HHHHHHHHHHHHHSTTCEEEEEES-SBCGGGGSCSEEEECCTTTH---------------HHHHHHHHHHHHHTTCCC-H
T ss_pred             cchHhhhhHhhhhhcccccccccc-cccccccccchhcccCCCch---------------HHHHHHHHHHHHHcCCcc-H
Confidence            1   111 2345578999999976 47778899999999877766               445555555555554333 3


Q ss_pred             HHhh
Q 019775          193 EYAA  196 (336)
Q Consensus       193 ~~~~  196 (336)
                      +|.+
T Consensus       246 ~fv~  249 (670)
T d1ogya2         246 DFVD  249 (670)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            4443

>d1t9ba1 c.31.1.3 (A:290-460) Acetohydroxyacid synthase catalytic subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: DHS-like NAD/FAD-binding domain
superfamily: DHS-like NAD/FAD-binding domain
family: Pyruvate oxidase and decarboxylase, middle domain
domain: Acetohydroxyacid synthase catalytic subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=87.37  E-value=1  Score=33.48  Aligned_cols=107  Identities=6%  Similarity=-0.002  Sum_probs=59.6

Q ss_pred             HHHHHHHHcCCCeEEEEeccc--hHHHHHHHHHHHHhcCCeeeecCCccccc-----cccC------------CCCCCcE
Q 019775           44 LTFTQTLLKCRGTIFFTGVGK--SGFVANKISQTLISLGIKSGFLNPLDALH-----GDIG------------ILSSDDI  104 (336)
Q Consensus        44 ~~~~~~i~~a~~~I~i~G~G~--s~~~a~~~~~~l~~~g~~~~~~~~~~~~~-----~~~~------------~~~~~dl  104 (336)
                      ++++++|.+|++.|.++|.|-  +....+.+.....++|.++.....+....     ....            .+.+-|+
T Consensus         1 nkaa~lL~~AkrPvii~G~G~~~~~~a~~~l~~lae~~g~Pv~tt~~~~g~~~~~hp~~~G~~g~~~~~~a~~~~~~~Dl   80 (171)
T d1t9ba1           1 NKAADLINLAKKPVLYVGAGILNHADGPRLLKELSDRAQIPVTTTLQGLGSFDQEDPKSLDMLGMHGCATANLAVQNADL   80 (171)
T ss_dssp             HHHHHHHHTCSSEEEEECGGGGGSTTHHHHHHHHHHHTTCCEEECGGGTTSSCTTSTTEEEECSTTSCHHHHHHHHHCSE
T ss_pred             CHHHHHHHHCCCeEEEECcChhhhhhHHHHHHHHHHhcCCceeecccccccccCCcccccccccccccHHHHhhhhcccc
Confidence            478999999988899999874  23344555555667899987543211111     0011            1234588


Q ss_pred             EEEEeCCCCc-------HHHHHHHHHHHHcCCeEEEEeCCCCCcccc--ccCEEEE
Q 019775          105 LVMFSKSGNT-------EELLKVVPCAKAKGAYLVSVTSVEGNALAA--VCDMNVH  151 (336)
Q Consensus       105 vi~iS~sG~~-------~~~~~~~~~ak~~g~~vi~IT~~~~s~l~~--~ad~~i~  151 (336)
                      ++++...-..       ......-......+.++|-|...+. .+.+  ..|+.|.
T Consensus        81 vl~~G~~l~~~~~~~~~~~~~~~~~~~~~~~~~iI~Id~d~~-el~~~~~~d~~i~  135 (171)
T d1t9ba1          81 IIAVGARFDDRVTGNISKFAPEARRAAAEGRGGIIHFEVSPK-NINKVVQTQIAVE  135 (171)
T ss_dssp             EEEESCCCCTTTSCSGGGSSHHHHHHHHTTSCEEEEEESCGG-GSSSSSCCSEEEE
T ss_pred             eeecccccccccccccchhhhhhhhcccCCCceEEEEeCCcc-ccCCcccCceeEE
Confidence            8887653221       1112222344556788888876543 3332  2455554

>d2uubb1 c.23.15.1 (B:7-240) Ribosomal protein S2 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Ribosomal protein S2
family: Ribosomal protein S2
domain: Ribosomal protein S2
species: Thermus thermophilus [TaxId: 274]

Probab=86.93  E-value=0.87  Score=35.99  Aligned_cols=69  Identities=9%  Similarity=0.077  Sum_probs=52.7

Q ss_pred             CcEEEEEeCCCCcHHHHHHHHHHHHcCCeEEEEeCCCCCccccccCEEEEcCCCcccCCCCCCChhHHHHHHHHHHHHHH
Q 019775          102 DDILVMFSKSGNTEELLKVVPCAKAKGAYLVSVTSVEGNALAAVCDMNVHLPVERELCPFDLAPVTSTAIQMVFGDTVAI  181 (336)
Q Consensus       102 ~dlvi~iS~sG~~~~~~~~~~~ak~~g~~vi~IT~~~~s~l~~~ad~~i~~~~~~~~~~~~~~~~~s~~~~~~l~d~l~~  181 (336)
                      .|++|++....+.    .++++|+..|++||+|.+....|  ...|+.|.+...            |.-+.-+++..|..
T Consensus       153 Pd~viv~d~~~~~----~Ai~Ea~~l~IPvIaivDTn~dp--~~vdypIP~NDd------------s~~sI~li~~~l~~  214 (234)
T d2uubb1         153 PDAIFVVDPTKEA----IAVREARKLFIPVIALADTDSDP--DLVDYIIPGNDD------------AIRSIQLILSRAVD  214 (234)
T ss_dssp             CSEEEESCTTTTH----HHHHHHHHHTCCEEEEECTTSCG--GGCSEEEESCSS------------CHHHHHHHHHHHHH
T ss_pred             ceeEEEecCCccH----HHHHHHHhhCCCEEEEeecCCCc--cCCcEEEECCCc------------hHHHHHHHHHHHHH
Confidence            7899888766554    45678899999999999987765  678888776554            44556788888888


Q ss_pred             HHHhhcC
Q 019775          182 AMMGARN  188 (336)
Q Consensus       182 ~~~~~~~  188 (336)
                      .+.+.++
T Consensus       215 ai~~gk~  221 (234)
T d2uubb1         215 LIIQARG  221 (234)
T ss_dssp             HHHTTSS
T ss_pred             HHHHHhc
Confidence            8887764

>d1kqfa2 c.81.1.1 (A:34-850) Formate dehydrogenase N, alpha subunit {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Formate dehydrogenase/DMSO reductase, domains 1-3
superfamily: Formate dehydrogenase/DMSO reductase, domains 1-3
family: Formate dehydrogenase/DMSO reductase, domains 1-3
domain: Formate dehydrogenase N, alpha subunit
species: Escherichia coli [TaxId: 562]

Probab=86.87  E-value=1.9  Score=40.68  Aligned_cols=84  Identities=12%  Similarity=0.185  Sum_probs=56.1

Q ss_pred             CCCCCCcEEEEEeCC-CCc--HHHHHHHHHHHHcCCeEEEEeCCCCCccccccCEEEEcCCCcccCCCCCCChhHHHHHH
Q 019775           97 GILSSDDILVMFSKS-GNT--EELLKVVPCAKAKGAYLVSVTSVEGNALAAVCDMNVHLPVERELCPFDLAPVTSTAIQM  173 (336)
Q Consensus        97 ~~~~~~dlvi~iS~s-G~~--~~~~~~~~~ak~~g~~vi~IT~~~~s~l~~~ad~~i~~~~~~~~~~~~~~~~~s~~~~~  173 (336)
                      ..+..-|++|++... .++  .....+++.+|++|+++|.|-.. .+..+..||..+.+..+++               .
T Consensus       185 ~D~~nad~Ili~G~Npae~hp~~~~~~~~a~k~~GaklIvVDPR-~t~tAa~AD~wlpIRPGTD---------------~  248 (817)
T d1kqfa2         185 VDIKNANVVMVMGGNAAEAHPVGFRWAMEAKNNNDATLIVVDPR-FTRTASVADIYAPIRSGTD---------------I  248 (817)
T ss_dssp             GGGGGCSEEEEESCCHHHHSTTTTHHHHHHHHHSCCEEEEECSS-CCHHHHTCSEEECCCTTCH---------------H
T ss_pred             HHhccCcEEEEecCChhhcCchhhhhHHHHhhccCCceeeeecc-cccccccchhhccccccch---------------H
Confidence            346677899988432 111  11234566788899999999986 5677899999999988766               5


Q ss_pred             HHHHHHHHHHHhhcCCChHHHhhc
Q 019775          174 VFGDTVAIAMMGARNLTRDEYAAN  197 (336)
Q Consensus       174 ~l~d~l~~~~~~~~~~~~~~~~~~  197 (336)
                      .++..++..++++...+ ++|.+.
T Consensus       249 All~gmi~~Iie~~l~d-~efv~~  271 (817)
T d1kqfa2         249 TFLSGVLRYLIENNKIN-AEYVKH  271 (817)
T ss_dssp             HHHHHHHHHHHHTTCSC-HHHHHH
T ss_pred             HHHHHHHHHHHHCCCcc-HHHHHH
Confidence            56666666666664433 344444

>d2ctza1 c.67.1.3 (A:1-421) O-acetyl-L-homoserine sulfhydrylase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: O-acetyl-L-homoserine sulfhydrylase
species: Thermus thermophilus [TaxId: 274]

Probab=86.87  E-value=2.1  Score=36.93  Aligned_cols=81  Identities=20%  Similarity=0.160  Sum_probs=51.2

Q ss_pred             HHHHhcCCeeeecCCccccccccCCCCCCcEEEEEeCCCCc----HHHHHHHHHHHHcCCeEEEEe-----CCCCCcccc
Q 019775           74 QTLISLGIKSGFLNPLDALHGDIGILSSDDILVMFSKSGNT----EELLKVVPCAKAKGAYLVSVT-----SVEGNALAA  144 (336)
Q Consensus        74 ~~l~~~g~~~~~~~~~~~~~~~~~~~~~~dlvi~iS~sG~~----~~~~~~~~~ak~~g~~vi~IT-----~~~~s~l~~  144 (336)
                      ..+.+.|+.+.++...+........++++.-+|.+-..++.    .++-.+++.||++|+.+|+=-     .....|+.-
T Consensus       116 ~~~~~~gi~~~~~d~~~~~~~~~~~~~~~t~li~~EtpsNP~l~v~Di~~i~~iA~~~g~~~vvDnT~a~tP~~~~Pl~~  195 (421)
T d2ctza1         116 VTLKRLGIEVRFTSREERPEEFLALTDEKTRAWWVESIGNPALNIPDLEALAQAAREKGVALIVDNTFGMGGYLLRPLAW  195 (421)
T ss_dssp             THHHHTTCEEEECCTTCCHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHTCEEEEECGGGGGGTSCCGGGG
T ss_pred             HHHhhccccceecccccCcchhccccCCCceEEEEcCCCcceeEecchHHHHHHHHhcCCceEecccccccceecccccc
Confidence            34566788888775433222222335566556666554443    578899999999999987542     223447777


Q ss_pred             ccCEEEEcCC
Q 019775          145 VCDMNVHLPV  154 (336)
Q Consensus       145 ~ad~~i~~~~  154 (336)
                      -||+++...+
T Consensus       196 GaDiVvhS~T  205 (421)
T d2ctza1         196 GAALVTHSLT  205 (421)
T ss_dssp             TCSEEEEETT
T ss_pred             CCcEEEEech
Confidence            7899987543

>d1m2ka_ c.31.1.5 (A:) AF1676, Sir2 homolog (Sir2-AF1?) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: DHS-like NAD/FAD-binding domain
superfamily: DHS-like NAD/FAD-binding domain
family: Sir2 family of transcriptional regulators
domain: AF1676, Sir2 homolog (Sir2-AF1?)
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=86.49  E-value=0.44  Score=38.18  Aligned_cols=54  Identities=11%  Similarity=0.273  Sum_probs=45.5

Q ss_pred             CCCCcEEEEEeCCCCcHHHHHHHHHHHHcCCeEEEEeCCCCCccccccCEEEEcC
Q 019775           99 LSSDDILVMFSKSGNTEELLKVVPCAKAKGAYLVSVTSVEGNALAAVCDMNVHLP  153 (336)
Q Consensus        99 ~~~~dlvi~iS~sG~~~~~~~~~~~ak~~g~~vi~IT~~~~s~l~~~ad~~i~~~  153 (336)
                      +.+-|++|++-.|+...-...+.+.++++|+++|.| |...+++.+.+|+.|.-.
T Consensus       175 ~~~~DlllviGTSl~V~pa~~l~~~a~~~g~~~i~I-N~~~t~~d~~~d~~i~g~  228 (249)
T d1m2ka_         175 VERADVIIVAGTSAVVQPAASLPLIVKQRGGAIIEI-NPDETPLTPIADYSLRGK  228 (249)
T ss_dssp             HHHCSEEEEESCCSCSTTGGGHHHHHHHTTCEEEEE-CSSCCTTGGGCSEEECSC
T ss_pred             cccCCEEEEECCCCeeeehhhHHHHHHHcCCeEEEE-CCCCCCCCCcccEEEECC
Confidence            456799999999999888888899999999999988 456778888999877643

>d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=86.48  E-value=2.4  Score=29.41  Aligned_cols=72  Identities=15%  Similarity=0.184  Sum_probs=48.0

Q ss_pred             hHHHHHHHHHHcCCCeEEEEeccchHHHHHHHHHHHHhcCCeeeecCCccccccccCCCCCCcEEEEEeCCCCcHHHHHH
Q 019775           41 PHTLTFTQTLLKCRGTIFFTGVGKSGFVANKISQTLISLGIKSGFLNPLDALHGDIGILSSDDILVMFSKSGNTEELLKV  120 (336)
Q Consensus        41 ~~i~~~~~~i~~a~~~I~i~G~G~s~~~a~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~dlvi~iS~sG~~~~~~~~  120 (336)
                      ++.+++-+.+..+ +||.++|.|..   +.+++..|...|+.+..+.....+..                ....+++.+.
T Consensus        18 ~Da~~l~~~~~~~-~~vvIIGgG~i---G~E~A~~l~~~g~~Vtli~~~~~~l~----------------~~~~~~~~~~   77 (121)
T d1d7ya2          18 EDARRIQAGLRPQ-SRLLIVGGGVI---GLELAATARTAGVHVSLVETQPRLMS----------------RAAPATLADF   77 (121)
T ss_dssp             HHHHHHHHHCCTT-CEEEEECCSHH---HHHHHHHHHHTTCEEEEEESSSSTTT----------------TTSCHHHHHH
T ss_pred             HHHHHHHHhhhcC-CeEEEECcchh---HHHHHHHhhcccceEEEEeecccccc----------------ccCCHHHHHH
Confidence            4555566666677 59999998864   55666677788999988865443211                1234555555


Q ss_pred             H-HHHHHcCCeEE
Q 019775          121 V-PCAKAKGAYLV  132 (336)
Q Consensus       121 ~-~~ak~~g~~vi  132 (336)
                      + +.++++|+.++
T Consensus        78 ~~~~l~~~GV~i~   90 (121)
T d1d7ya2          78 VARYHAAQGVDLR   90 (121)
T ss_dssp             HHHHHHTTTCEEE
T ss_pred             HHHHHHHCCcEEE
Confidence            4 57788999875

>d2b4ya1 c.31.1.5 (A:36-302) NAD-dependent deacetylase sirtuin-5 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: DHS-like NAD/FAD-binding domain
superfamily: DHS-like NAD/FAD-binding domain
family: Sir2 family of transcriptional regulators
domain: NAD-dependent deacetylase sirtuin-5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.64  E-value=0.45  Score=38.60  Aligned_cols=56  Identities=14%  Similarity=0.165  Sum_probs=46.4

Q ss_pred             CCCCcEEEEEeCCCCcHHHHHHHHHHHHcCCeEEEEeCCCCCccccccCEEEEcCCC
Q 019775           99 LSSDDILVMFSKSGNTEELLKVVPCAKAKGAYLVSVTSVEGNALAAVCDMNVHLPVE  155 (336)
Q Consensus        99 ~~~~dlvi~iS~sG~~~~~~~~~~~ak~~g~~vi~IT~~~~s~l~~~ad~~i~~~~~  155 (336)
                      +.+-|++|++-.|....-...+++.|+++|+++|.|- ....+....+|+.|.-.++
T Consensus       204 ~~~aDlllviGTSl~V~pa~~l~~~a~~~g~~vv~IN-~~~t~~d~~~d~~i~g~~~  259 (267)
T d2b4ya1         204 LAHCDLCLVVGTSSVVYPAAMFAPQVAARGVPVAEFN-TETTPATNRFRFHFQGPCG  259 (267)
T ss_dssp             HHHCSEEEEESCCSCSTTGGGHHHHHHHTTCCEEEEE-SSCCTTGGGSSEEEESCHH
T ss_pred             hhhCCeEEEECCCCeecCHHHHHHHHHHcCCcEEEEe-CCCCCCCCccCEEEeCCHH
Confidence            4556899999999998888889999999999999884 4567888889988876543

>d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=85.53  E-value=2  Score=29.39  Aligned_cols=58  Identities=19%  Similarity=0.300  Sum_probs=41.1

Q ss_pred             CeEEEEeccchHHHHHHHHHHHHhcCCeeeecCCccccccccCCCCCCcEEEEEeCCCCcHHHHHH-HHHHHHcCCeEE
Q 019775           55 GTIFFTGVGKSGFVANKISQTLISLGIKSGFLNPLDALHGDIGILSSDDILVMFSKSGNTEELLKV-VPCAKAKGAYLV  132 (336)
Q Consensus        55 ~~I~i~G~G~s~~~a~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~dlvi~iS~sG~~~~~~~~-~~~ak~~g~~vi  132 (336)
                      +++.++|.|.   ++.+++..|.++|.++.++...+.+.                 ++..+++.+. .+.++++|+++.
T Consensus        23 ~~v~IiGgG~---ig~E~A~~l~~~G~~Vtlve~~~~il-----------------~~~d~~~~~~l~~~l~~~GI~i~   81 (117)
T d1ebda2          23 KSLVVIGGGY---IGIELGTAYANFGTKVTILEGAGEIL-----------------SGFEKQMAAIIKKRLKKKGVEVV   81 (117)
T ss_dssp             SEEEEECCSH---HHHHHHHHHHHTTCEEEEEESSSSSS-----------------TTSCHHHHHHHHHHHHHTTCEEE
T ss_pred             CeEEEECCCc---cceeeeeeecccccEEEEEEecceec-----------------ccccchhHHHHHHHHHhcCCEEE
Confidence            6999999886   46677788899999999886544321                 2333455554 567788888765

>d2ihta1 c.31.1.3 (A:198-374) Carboxyethylarginine synthase {Streptomyces clavuligerus [TaxId: 1901]}

class: Alpha and beta proteins (a/b)
fold: DHS-like NAD/FAD-binding domain
superfamily: DHS-like NAD/FAD-binding domain
family: Pyruvate oxidase and decarboxylase, middle domain
domain: Carboxyethylarginine synthase
species: Streptomyces clavuligerus [TaxId: 1901]

Probab=85.03  E-value=0.52  Score=35.47  Aligned_cols=101  Identities=10%  Similarity=0.018  Sum_probs=59.5

Q ss_pred             hhHHHHHHHHHHcCCCeEEEEeccchH-HHHHHHHHHHHhcCCeeeecCCccc-------ccc-c--------------c
Q 019775           40 LPHTLTFTQTLLKCRGTIFFTGVGKSG-FVANKISQTLISLGIKSGFLNPLDA-------LHG-D--------------I   96 (336)
Q Consensus        40 ~~~i~~~~~~i~~a~~~I~i~G~G~s~-~~a~~~~~~l~~~g~~~~~~~~~~~-------~~~-~--------------~   96 (336)
                      ++.+++++++|.+|++.++++|.|... .....+.....++|.++.....+..       ... .              .
T Consensus         6 ~~~i~~a~~lL~~AkrPvii~G~g~~~~~a~~~l~~lae~~~iPv~~t~~~kg~~p~~hp~~~G~~~~~~~G~~~~~~~~   85 (177)
T d2ihta1           6 QKAADQAAALLAEAKHPVLVVGAAAIRSGAVPAIRALAERLNIPVITTYIAKGVLPVGHELNYGAVTGYMDGILNFPALQ   85 (177)
T ss_dssp             HHHHHHHHHHHHHCSSEEEEECHHHHHTTCHHHHHHHHHHHTCCEEECSTTTTSSCTTCTTEEEECCTTHHHHHTSCHHH
T ss_pred             HHHHHHHHHHHHhCCCEEEEECcCcchhhhHHHHHHHhhcceEEEEeccccccCCCCcccceeeeeeeccccccccHHHH
Confidence            578999999999998888888888644 3455555555677888875332111       110 0              0


Q ss_pred             CCCCCCcEEEEEeCCCCcHHHHHHHHHHHHcCCeEEEEeCCCCCccc
Q 019775           97 GILSSDDILVMFSKSGNTEELLKVVPCAKAKGAYLVSVTSVEGNALA  143 (336)
Q Consensus        97 ~~~~~~dlvi~iS~sG~~~~~~~~~~~ak~~g~~vi~IT~~~~s~l~  143 (336)
                      ..+.+-|++|++-..-....  ..-......++++|-|...+ ..+.
T Consensus        86 ~~l~~aDlvl~vG~~~~~~~--~~~~~~~~~~~k~I~Id~d~-~~i~  129 (177)
T d2ihta1          86 TMFAPVDLVLTVGYDYAEDL--RPSMWQKGIEKKTVRISPTV-NPIP  129 (177)
T ss_dssp             HHHTTCCEEEEETCCGGGCC--CHHHHCCSSCCEEEEEESSC-CSCT
T ss_pred             HHhccCCceEEecccccccc--cccccccCCccceeEEcCCH-HHhC
Confidence            13566799999843221100  11112344567888887653 3443

>d1y81a1 c.2.1.8 (A:6-121) Hypothetical protein PF0725 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Hypothetical protein PF0725
species: Pyrococcus furiosus [TaxId: 2261]

Probab=84.91  E-value=3.3  Score=28.46  Aligned_cols=78  Identities=24%  Similarity=0.254  Sum_probs=53.8

Q ss_pred             CeEEEEeccch-HHHHHHHHHHHHhcCCeeeecCCc-ccc-----ccccCCCCCC-cEEEEEeCCCCcHHHHHHHHHHHH
Q 019775           55 GTIFFTGVGKS-GFVANKISQTLISLGIKSGFLNPL-DAL-----HGDIGILSSD-DILVMFSKSGNTEELLKVVPCAKA  126 (336)
Q Consensus        55 ~~I~i~G~G~s-~~~a~~~~~~l~~~g~~~~~~~~~-~~~-----~~~~~~~~~~-dlvi~iS~sG~~~~~~~~~~~ak~  126 (336)
                      ++|.++|.... ...+......|...|++++.+++. ..+     ...+..+.+. |+++++.   ....+.++++.+.+
T Consensus         2 KsIAVvGaS~~~~k~g~~v~~~L~~~g~~V~pVnP~~~~i~G~~~y~sl~~lp~~~D~vvi~v---p~~~~~~~l~~~~~   78 (116)
T d1y81a1           2 RKIALVGASKNPAKYGNIILKDLLSKGFEVLPVNPNYDEIEGLKCYRSVRELPKDVDVIVFVV---PPKVGLQVAKEAVE   78 (116)
T ss_dssp             CEEEEETCCSCTTSHHHHHHHHHHHTTCEEEEECTTCSEETTEECBSSGGGSCTTCCEEEECS---CHHHHHHHHHHHHH
T ss_pred             cEEEEEcccCCCCCcHHHHHHHHHHCCCEEEEEccccccccCccccccchhccccceEEEEEe---CHHHHHHHHHHHHh
Confidence            48999997754 467788888889999999988853 222     1112234333 8877653   45667788889999


Q ss_pred             cCCeEEEEe
Q 019775          127 KGAYLVSVT  135 (336)
Q Consensus       127 ~g~~vi~IT  135 (336)
                      .|++.+.+.
T Consensus        79 ~g~k~v~~~   87 (116)
T d1y81a1          79 AGFKKLWFQ   87 (116)
T ss_dssp             TTCCEEEEC
T ss_pred             cCCceEEec
Confidence            999977553

>d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.35  E-value=1.3  Score=31.64  Aligned_cols=77  Identities=17%  Similarity=0.135  Sum_probs=54.2

Q ss_pred             ChhHHHHHHHHHHcCCCeEEEEeccchH-HHHHHHHHHHHhcCCeeeecCCccccccccCCCCCCcEEEEEeCCCCcHHH
Q 019775           39 SLPHTLTFTQTLLKCRGTIFFTGVGKSG-FVANKISQTLISLGIKSGFLNPLDALHGDIGILSSDDILVMFSKSGNTEEL  117 (336)
Q Consensus        39 ~~~~i~~~~~~i~~a~~~I~i~G~G~s~-~~a~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~dlvi~iS~sG~~~~~  117 (336)
                      +.++..++.+.+.+. ++|.++|.|... -+|..++.....+|..+..+...+....                ....+++
T Consensus        23 ~~~d~~~l~~~~~~~-k~i~IvGgG~~G~E~A~~l~~~~~~~g~~Vt~i~~~~~~l~----------------~~~~~~~   85 (137)
T d1m6ia2          23 KIGDFRSLEKISREV-KSITIIGGGFLGSELACALGRKARALGTEVIQLFPEKGNMG----------------KILPEYL   85 (137)
T ss_dssp             SHHHHHHHHHHHHHC-SEEEEECCSHHHHHHHHHHHHHHHHHTCEEEEECSSSSTTT----------------TTSCHHH
T ss_pred             CHHHHHHHHHHhhcC-CEEEEECCCHHHHHHHHHHHHHHHhcCCEEEEecccccCCc----------------ccCCHHH
Confidence            456777888888888 599999999876 6777777777788999988765443211                1123444


Q ss_pred             HH-HHHHHHHcCCeEE
Q 019775          118 LK-VVPCAKAKGAYLV  132 (336)
Q Consensus       118 ~~-~~~~ak~~g~~vi  132 (336)
                      .+ +.+.++++|+.+.
T Consensus        86 ~~~~~~~l~~~GV~~~  101 (137)
T d1m6ia2          86 SNWTMEKVRREGVKVM  101 (137)
T ss_dssp             HHHHHHHHHTTTCEEE
T ss_pred             HHHHHHHHHhCCcEEE
Confidence            44 4577888888765

>d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.27  E-value=2.8  Score=29.12  Aligned_cols=58  Identities=17%  Similarity=0.239  Sum_probs=41.5

Q ss_pred             CeEEEEeccchHHHHHHHHHHHHhcCCeeeecCCccccccccCCCCCCcEEEEEeCCCCcHHHHHH-HHHHHHcCCeEE
Q 019775           55 GTIFFTGVGKSGFVANKISQTLISLGIKSGFLNPLDALHGDIGILSSDDILVMFSKSGNTEELLKV-VPCAKAKGAYLV  132 (336)
Q Consensus        55 ~~I~i~G~G~s~~~a~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~dlvi~iS~sG~~~~~~~~-~~~ak~~g~~vi  132 (336)
                      +|+.++|.|.   ++.+++..|.++|.++.++...+.+.                 ++..+++.+. .+.++++|+++.
T Consensus        23 k~vvIvGgG~---iG~E~A~~l~~~G~~Vtlv~~~~~~l-----------------~~~d~~~~~~~~~~l~~~Gv~i~   81 (125)
T d3grsa2          23 GRSVIVGAGY---IAVEMAGILSALGSKTSLMIRHDKVL-----------------RSFDSMISTNCTEELENAGVEVL   81 (125)
T ss_dssp             SEEEEECCSH---HHHHHHHHHHHTTCEEEEECSSSSSC-----------------TTSCHHHHHHHHHHHHHTTCEEE
T ss_pred             CEEEEEcCCc---cHHHHHHHHhcCCcEEEEEeeccccc-----------------cchhhHHHHHHHHHHHHCCCEEE
Confidence            6999999984   78888999999999998887654321                 2233554444 467788887654

>d2vapa1 c.32.1.1 (A:23-231) Cell-division protein FtsZ {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: Tubulin nucleotide-binding domain-like
superfamily: Tubulin nucleotide-binding domain-like
family: Tubulin, GTPase domain
domain: Cell-division protein FtsZ
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=84.18  E-value=5  Score=30.76  Aligned_cols=58  Identities=24%  Similarity=0.273  Sum_probs=40.9

Q ss_pred             CCCCcEEEEEe-CCCCcHH--HHHHHHHHHHcCCeEEEEeCCCCC---------------ccccccCEEEEcCCCc
Q 019775           99 LSSDDILVMFS-KSGNTEE--LLKVVPCAKAKGAYLVSVTSVEGN---------------ALAAVCDMNVHLPVER  156 (336)
Q Consensus        99 ~~~~dlvi~iS-~sG~~~~--~~~~~~~ak~~g~~vi~IT~~~~s---------------~l~~~ad~~i~~~~~~  156 (336)
                      ++.-|++|+++ ..|.+..  .--+++.||+.|+.++++-..+-+               .+.+.+|.++.++.+.
T Consensus        97 l~~~d~vfi~AGlGGGTGsgaapvia~~ake~g~lvv~ivtlPF~~EG~~r~~~A~~~l~~l~~~~d~~Ivi~Nd~  172 (209)
T d2vapa1          97 IQDSDMVFITCGLGGGTGTGSAPVVAEISKKIGALTVAVVTLPFVMEGKVRMKNAMEGLERLKQHTDTLVVIPNEK  172 (209)
T ss_dssp             HTTCSEEEEEEETTSSHHHHHHHHHHHHHHHTTCEEEEEEEECCGGGCHHHHHHHHHHHHHHHTTCSEEEEEEGGG
T ss_pred             ccCCCEEEEEEeCCCCccccHHHHHHHHHHHcCCcEEEEEecchhhhhHHHHHHHHHHHHHHHHhhcceEecccHH
Confidence            44556666665 4555533  334679999999999887765554               6678899999997764

>d1ybha1 c.31.1.3 (A:281-459) Acetohydroxyacid synthase catalytic subunit {Thale cress (Arabidopsis thaliana), chloroplast [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: DHS-like NAD/FAD-binding domain
superfamily: DHS-like NAD/FAD-binding domain
family: Pyruvate oxidase and decarboxylase, middle domain
domain: Acetohydroxyacid synthase catalytic subunit
species: Thale cress (Arabidopsis thaliana), chloroplast [TaxId: 3702]

Probab=84.07  E-value=2  Score=32.09  Aligned_cols=48  Identities=10%  Similarity=0.162  Sum_probs=35.5

Q ss_pred             ChhHHHHHHHHHHcCCCeEEEEeccchHHHHHHHHHHHHhcCCeeeecC
Q 019775           39 SLPHTLTFTQTLLKCRGTIFFTGVGKSGFVANKISQTLISLGIKSGFLN   87 (336)
Q Consensus        39 ~~~~i~~~~~~i~~a~~~I~i~G~G~s~~~a~~~~~~l~~~g~~~~~~~   87 (336)
                      +.+.+++++++|.+|++-+.++|.|... ....+.....++|.++....
T Consensus         5 ~~~~i~~~~~~L~~AkrPvii~G~G~~~-a~~~l~~lae~~~~Pv~tt~   52 (179)
T d1ybha1           5 EDSHLEQIVRLISESKKPVLYVGGGCLN-SSDELGRFVELTGIPVASTL   52 (179)
T ss_dssp             CHHHHHHHHHHHHHCSSEEEEECGGGTT-CHHHHHHHHHHHCCCEEECT
T ss_pred             CHHHHHHHHHHHHhCCCeEEEECHHHHH-HHHHHHHHHhhhcccceecc
Confidence            4578999999999998778888877543 34556555566788887654

>d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=84.01  E-value=2.4  Score=29.86  Aligned_cols=72  Identities=10%  Similarity=0.100  Sum_probs=47.8

Q ss_pred             hHHHHHHHHHHcCCCeEEEEeccchHHHHHHHHHHHHhcCCeeeecCCccccccccCCCCCCcEEEEEeCCCCcHHHHHH
Q 019775           41 PHTLTFTQTLLKCRGTIFFTGVGKSGFVANKISQTLISLGIKSGFLNPLDALHGDIGILSSDDILVMFSKSGNTEELLKV  120 (336)
Q Consensus        41 ~~i~~~~~~i~~a~~~I~i~G~G~s~~~a~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~dlvi~iS~sG~~~~~~~~  120 (336)
                      ++.+++-+.+..+ +||.++|.|..   +.+++..|...|..+.++...+....   .             ...+++.+.
T Consensus        23 ~d~~~l~~~~~~~-k~v~VIGgG~i---G~E~A~~l~~~g~~Vtvie~~~~~l~---~-------------~~~~~~~~~   82 (133)
T d1q1ra2          23 EDAECIRRQLIAD-NRLVVIGGGYI---GLEVAATAIKANMHVTLLDTAARVLE---R-------------VTAPPVSAF   82 (133)
T ss_dssp             HHHHHHHHTCCTT-CEEEEECCSHH---HHHHHHHHHHTTCEEEEECSSSSTTT---T-------------TSCHHHHHH
T ss_pred             HHHHHHHHhhccC-CEEEEECCchH---HHHHHHHHHhhCcceeeeeecccccc---c-------------ccchhhhhh
Confidence            4455555566667 59999998864   55677778888999998875544321   0             124555555


Q ss_pred             H-HHHHHcCCeEE
Q 019775          121 V-PCAKAKGAYLV  132 (336)
Q Consensus       121 ~-~~ak~~g~~vi  132 (336)
                      + +.++++|+.++
T Consensus        83 ~~~~~~~~GV~i~   95 (133)
T d1q1ra2          83 YEHLHREAGVDIR   95 (133)
T ss_dssp             HHHHHHHHTCEEE
T ss_pred             hhhcccccccEEE
Confidence            4 56688888755

>d1lkvx_ a.118.14.1 (X:) FliG {Thermotoga maritima [TaxId: 2336]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: FliG
family: FliG
domain: FliG
species: Thermotoga maritima [TaxId: 2336]

Probab=83.63  E-value=0.0028  Score=50.58  Aligned_cols=113  Identities=10%  Similarity=-0.059  Sum_probs=74.4

Q ss_pred             hhhhccccCCCCccccCCCcHHHHHHHHHhcCcce-------E------EEEcCCCcEEEEeeHHHHHHHHHhcCCchhh
Q 019775          210 KVQDVMKPQKELPVCKEGDLIMDQLVELTSKGCGC-------L------LVIDEEYHLIGTFTDGDLRRTLKASGEGIFK  276 (336)
Q Consensus       210 ~v~~im~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-------i------pVvd~~~~~~G~it~~dl~~~~~~~~~~~~~  276 (336)
                      ..+.+|....  .......++..+.+.++......       +      ++.+..++++|+....++.....       .
T Consensus        66 ~~~~~~~~~~--~~~~~~~~~~~v~~il~~~~~~~~~~~l~~l~~~~~~~~~~i~~~l~~f~dl~~l~~~~~-------~  136 (213)
T d1lkvx_          66 LEKKISGFVS--RTFSKVGGIDTAAEIMNNLDRTTEKKIMDKLVQENPELADEIRRRMFVFEDILKLDDRSI-------Q  136 (213)
T ss_dssp             HHHHHHHHHH--HHHSSCCCHHHHHHHHHTSCHHHHHHHHHHHHHHCHHHHHHHHHHHCCGGGGGGSCHHHH-------H
T ss_pred             HHhccccccc--hhhhcchHHHHHHHHHHhcccccchhheeeeeecChhhhhhHhhhccccccHHHHccccH-------h
Confidence            3444555432  24566666777777666433110       0      11222345555555554443322       4


Q ss_pred             hhHhhhcCCCCeeeCCCccHHHHHHHhcCCCCCccEeEEEeCCCcEEEEEehhhHhh
Q 019775          277 LTVGEMCNRSPRTIGPDAMAVEAMQKMESPPSPVQFLPVINRQNILIGIVTLHGLVS  333 (336)
Q Consensus       277 ~~i~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~l~Vv~~~~~~iGiit~~di~~  333 (336)
                      ..+.+++......+..+++.+.+.+.|.+.  +.+..||++++++.+|.|+..|+..
T Consensus       137 ~~l~~i~~~~~~~a~~~~~~e~~~~~l~~~--~~~~~~vv~~e~~~~G~I~~~Die~  191 (213)
T d1lkvx_         137 LVLREVDTRDLALALKGASDELKEKIFKNM--SKRAAALLKDELEYMGPVRLKDVEE  191 (213)
T ss_dssp             HHHTTSCHHHHHHHHTTCCHHHHHHHHTTS--CHHHHHHHHHHHHSCCCCCHHHHHH
T ss_pred             HHHHHhhhhhheeehhcCCHHHHHHHHHhC--CHHHHHHHHHhhhhcCCCcHHHHHH
Confidence            566777766667788889999999999999  8999999999899999999999754

>d1iuka_ c.2.1.8 (A:) Hypothetical protein TT1466 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Hypothetical protein TT1466
species: Thermus thermophilus [TaxId: 274]

Probab=82.68  E-value=2.1  Score=30.49  Aligned_cols=87  Identities=26%  Similarity=0.236  Sum_probs=59.4

Q ss_pred             HHHHHHcCCCeEEEEeccch-HHHHHHHHHHHHhcCCeeeecCCcc---ccccc-----cCCC-CCCcEEEEEeCCCCcH
Q 019775           46 FTQTLLKCRGTIFFTGVGKS-GFVANKISQTLISLGIKSGFLNPLD---ALHGD-----IGIL-SSDDILVMFSKSGNTE  115 (336)
Q Consensus        46 ~~~~i~~a~~~I~i~G~G~s-~~~a~~~~~~l~~~g~~~~~~~~~~---~~~~~-----~~~~-~~~dlvi~iS~sG~~~  115 (336)
                      +-+.|.+. ++|.++|.... ...+......|...|++.+.++...   .....     ...+ .+-|+++++-   ..+
T Consensus         6 i~~~L~~p-ksIAVVGaS~~~~k~g~~v~~~L~~~g~~~~~v~~~~~~~~i~g~~~~~~l~~i~~~iD~v~v~~---p~~   81 (136)
T d1iuka_           6 LRAYLSQA-KTIAVLGAHKDPSRPAHYVPRYLREQGYRVLPVNPRFQGEELFGEEAVASLLDLKEPVDILDVFR---PPS   81 (136)
T ss_dssp             HHHHHHHC-CEEEEETCCSSTTSHHHHHHHHHHHTTCEEEEECGGGTTSEETTEECBSSGGGCCSCCSEEEECS---CHH
T ss_pred             HHHHHhCC-CeEEEEeecCCCCCchHHHHHHHhcCCCCceEEEeccccceeeceecccchhhccCCCceEEEec---cHH
Confidence            44556688 59999998765 4688888888999999998887422   22111     1123 2347766665   466


Q ss_pred             HHHHHHHHHHHcCCeEEEEeC
Q 019775          116 ELLKVVPCAKAKGAYLVSVTS  136 (336)
Q Consensus       116 ~~~~~~~~ak~~g~~vi~IT~  136 (336)
                      .+.++++.|.+.|++.+.+..
T Consensus        82 ~v~~~v~~~~~~g~k~i~~q~  102 (136)
T d1iuka_          82 ALMDHLPEVLALRPGLVWLQS  102 (136)
T ss_dssp             HHTTTHHHHHHHCCSCEEECT
T ss_pred             HHHHHHHHHHhhCCCeEEEec
Confidence            777788888889999877654

>d1w5fa1 c.32.1.1 (A:22-215) Cell-division protein FtsZ {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Tubulin nucleotide-binding domain-like
superfamily: Tubulin nucleotide-binding domain-like
family: Tubulin, GTPase domain
domain: Cell-division protein FtsZ
species: Thermotoga maritima [TaxId: 2336]

Probab=82.62  E-value=4.8  Score=30.44  Aligned_cols=58  Identities=16%  Similarity=0.190  Sum_probs=41.9

Q ss_pred             CCCCcEEEEEe-CCCCcHH--HHHHHHHHHHcCCeEEEEeCCCCC---------------ccccccCEEEEcCCCc
Q 019775           99 LSSDDILVMFS-KSGNTEE--LLKVVPCAKAKGAYLVSVTSVEGN---------------ALAAVCDMNVHLPVER  156 (336)
Q Consensus        99 ~~~~dlvi~iS-~sG~~~~--~~~~~~~ak~~g~~vi~IT~~~~s---------------~l~~~ad~~i~~~~~~  156 (336)
                      ++..|++|+++ ..|-+-.  .--+++.||+.|+.+++|-..+-+               .|.+++|.++.++.+.
T Consensus        82 l~~~d~vfi~AGlGGgTGtgaapviA~~ake~g~lvv~ivtlPF~~EG~~r~~~A~~gl~~L~~~~D~~Ivi~Nd~  157 (194)
T d1w5fa1          82 LQDTHMVFITAGFGGGTGTGASPVIAKIAKEMGILTVAIVTTPFYFEGPERLKKAIEGLKKLRKHVDTLIKISNNK  157 (194)
T ss_dssp             TTTCSEEEEEEETTSSHHHHHHHHHHHHHHHTTCEEEEEEEECCGGGCHHHHHHHHHHHHHHHHTCSEEEEEEHHH
T ss_pred             hcCCCeEEEEEecCCCcccchHHHHHHHHHHcCCceEEEEeechhhhHHHHHHHHHHHHHHHHHHhhhhheehHHH
Confidence            55667766665 4555533  445689999999999988766554               5678899999987654

>d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Siroheme synthase CysG, domain 1
species: Salmonella typhimurium [TaxId: 90371]

Probab=81.44  E-value=2.7  Score=28.55  Aligned_cols=79  Identities=13%  Similarity=0.175  Sum_probs=49.8

Q ss_pred             CeEEEEeccchHHHHHHHHHHHHhcCCeeeecCC--cccccc---------ccCCCCCC---cEEEEEeCCCCcHHHHHH
Q 019775           55 GTIFFTGVGKSGFVANKISQTLISLGIKSGFLNP--LDALHG---------DIGILSSD---DILVMFSKSGNTEELLKV  120 (336)
Q Consensus        55 ~~I~i~G~G~s~~~a~~~~~~l~~~g~~~~~~~~--~~~~~~---------~~~~~~~~---dlvi~iS~sG~~~~~~~~  120 (336)
                      ++|.++|.|.   +|..-+..|.+.|-.+.++.+  ......         ......+.   +..+++.-++....-.++
T Consensus        13 k~vlVvG~G~---va~~ka~~ll~~ga~v~v~~~~~~~~~~~~~~~~~i~~~~~~~~~~dl~~~~lv~~at~d~~~n~~i   89 (113)
T d1pjqa1          13 RDCLIVGGGD---VAERKARLLLEAGARLTVNALTFIPQFTVWANEGMLTLVEGPFDETLLDSCWLAIAATDDDTVNQRV   89 (113)
T ss_dssp             CEEEEECCSH---HHHHHHHHHHHTTBEEEEEESSCCHHHHHHHTTTSCEEEESSCCGGGGTTCSEEEECCSCHHHHHHH
T ss_pred             CEEEEECCCH---HHHHHHHHHHHCCCeEEEEeccCChHHHHHHhcCCceeeccCCCHHHhCCCcEEeecCCCHHHHHHH
Confidence            6999999987   455667778888888877642  111111         01112222   234555556666666688


Q ss_pred             HHHHHHcCCeEEEEeC
Q 019775          121 VPCAKAKGAYLVSVTS  136 (336)
Q Consensus       121 ~~~ak~~g~~vi~IT~  136 (336)
                      .+.||++|+.+=...+
T Consensus        90 ~~~a~~~~ilVNv~D~  105 (113)
T d1pjqa1          90 SDAAESRRIFCNVVDA  105 (113)
T ss_dssp             HHHHHHTTCEEEETTC
T ss_pred             HHHHHHcCCEEEeCCC
Confidence            8999999998765544

>d1y4ia1 c.67.1.3 (A:2-398) Methionine gamma-lyase, MGL {Citrobacter freundii [TaxId: 546]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Methionine gamma-lyase, MGL
species: Citrobacter freundii [TaxId: 546]

Probab=81.08  E-value=4.5  Score=34.40  Aligned_cols=82  Identities=20%  Similarity=0.270  Sum_probs=52.3

Q ss_pred             HHHHHHhcCCeeeecCCccccccccCCCCCCcEEEEEeCCCCc----HHHHHHHHHHHHcCCeEEE----EeCCCCCccc
Q 019775           72 ISQTLISLGIKSGFLNPLDALHGDIGILSSDDILVMFSKSGNT----EELLKVVPCAKAKGAYLVS----VTSVEGNALA  143 (336)
Q Consensus        72 ~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~dlvi~iS~sG~~----~~~~~~~~~ak~~g~~vi~----IT~~~~s~l~  143 (336)
                      +...+.+.|+.+.++...+. ......++++.-+|.+-..++.    .++-.+++.|+++|+.+++    -|.....|+.
T Consensus       119 ~~~~l~~~Gi~~~~vd~~d~-~~~~~~i~~~Tklv~~Esp~NP~l~v~Di~~i~~iA~~~gi~~vvDnT~atP~~~~Pl~  197 (397)
T d1y4ia1         119 LSHSMPKFGINVRFVDAGKP-EEIRAAMRPETKVVYIETPANPTLSLVDIETVAGIAHQQGALLVVDNTFMSPYCQQPLQ  197 (397)
T ss_dssp             HHTHHHHTTCEEEEECTTSH-HHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHTTCEEEEECTTTCTTTCCGGG
T ss_pred             hhcccCCCceEeeccCCCCH-HHHHHhcCCCCcEEEecCCcccceeecccHHHHHHhhcCCceEEecCcccCcccCcchh
Confidence            33446677999988874432 2222335566556666554443    5688889999999987653    2344445666


Q ss_pred             cccCEEEEcCC
Q 019775          144 AVCDMNVHLPV  154 (336)
Q Consensus       144 ~~ad~~i~~~~  154 (336)
                      --||+++...+
T Consensus       198 ~GaDivihS~T  208 (397)
T d1y4ia1         198 LGADIVVHSVT  208 (397)
T ss_dssp             GTCSEEEEETT
T ss_pred             cCCCEEEEehh
Confidence            67999987644

>d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=80.73  E-value=4.1  Score=28.08  Aligned_cols=71  Identities=14%  Similarity=0.189  Sum_probs=43.5

Q ss_pred             HHHHHHHHHHcC-CCeEEEEeccchHHHHHHHHHHHHhcCCeeeecCCccccccccCCCCCCcEEEEEeCCC-CcHHHHH
Q 019775           42 HTLTFTQTLLKC-RGTIFFTGVGKSGFVANKISQTLISLGIKSGFLNPLDALHGDIGILSSDDILVMFSKSG-NTEELLK  119 (336)
Q Consensus        42 ~i~~~~~~i~~a-~~~I~i~G~G~s~~~a~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~dlvi~iS~sG-~~~~~~~  119 (336)
                      +..++-+.+.+. .++|.++|.|.   ++.+++..|.+.|.++..+...+..                 .++ ..+++.+
T Consensus        17 da~~i~~~~~~~~~k~vvViGgG~---iG~E~A~~l~~~g~~Vtlie~~~~~-----------------l~~~~d~~~~~   76 (123)
T d1nhpa2          17 WAIKLKQKTVDPEVNNVVVIGSGY---IGIEAAEAFAKAGKKVTVIDILDRP-----------------LGVYLDKEFTD   76 (123)
T ss_dssp             HHHHHHHHHTCTTCCEEEEECCSH---HHHHHHHHHHHTTCEEEEEESSSST-----------------TTTTCCHHHHH
T ss_pred             HHHHHHHHhhccCCCEEEEECChH---HHHHHHHHhhccceEEEEEEecCcc-----------------cccccchhhHH
Confidence            334444444432 15999999885   5566778888899999887544322                 111 2355555


Q ss_pred             HH-HHHHHcCCeEE
Q 019775          120 VV-PCAKAKGAYLV  132 (336)
Q Consensus       120 ~~-~~ak~~g~~vi  132 (336)
                      .+ +.++++|+++.
T Consensus        77 ~~~~~l~~~gv~~~   90 (123)
T d1nhpa2          77 VLTEEMEANNITIA   90 (123)
T ss_dssp             HHHHHHHTTTEEEE
T ss_pred             HHHHHhhcCCeEEE
Confidence            54 56777776654

>d1qgna_ c.67.1.3 (A:) Cystathionine gamma-synthase, CGS {Common tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystathionine gamma-synthase, CGS
species: Common tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=80.65  E-value=2.8  Score=35.74  Aligned_cols=113  Identities=17%  Similarity=0.169  Sum_probs=61.7

Q ss_pred             hHHHHHHHHHHcCCCeEEEEeccchHHHHHHH-----------------------HHHHHhcCCeeeecCCccccccccC
Q 019775           41 PHTLTFTQTLLKCRGTIFFTGVGKSGFVANKI-----------------------SQTLISLGIKSGFLNPLDALHGDIG   97 (336)
Q Consensus        41 ~~i~~~~~~i~~a~~~I~i~G~G~s~~~a~~~-----------------------~~~l~~~g~~~~~~~~~~~~~~~~~   97 (336)
                      +.+++.+..|..+ ...++++.|.+...+-.+                       ...+.+.|..+.++.+.+.......
T Consensus        70 ~~LE~~la~LEgg-~~a~~~sSGMaAi~~~l~~l~~~Gd~iv~~~~~Yg~t~~l~~~~~~~~gi~~~~~~~~~~~~~~~~  148 (398)
T d1qgna_          70 VVLEEKISALEGA-ESTLLMASGMCASTVMLLALVPAGGHIVTTTDCYRKTRIFIETILPKMGITATVIDPADVGALELA  148 (398)
T ss_dssp             HHHHHHHHHHHTC-SEEEEESCHHHHHHHHHHHHSCSSCEEEEETTSCHHHHHHHHHTGGGGTCEEEEECSSCHHHHHHH
T ss_pred             HHHHHHHHHHhCC-ceEEEecCcchHHHHHHhhcccccccccccccccchhhhhhcccccccccccccccccchhhhhhh
Confidence            3455555555555 355666666555333222                       2234455666666654333222222


Q ss_pred             CCCCCcEEEEEeCCCC----cHHHHHHHHHHHHcCCeEEE----EeCCCCCccccccCEEEEcCC
Q 019775           98 ILSSDDILVMFSKSGN----TEELLKVVPCAKAKGAYLVS----VTSVEGNALAAVCDMNVHLPV  154 (336)
Q Consensus        98 ~~~~~dlvi~iS~sG~----~~~~~~~~~~ak~~g~~vi~----IT~~~~s~l~~~ad~~i~~~~  154 (336)
                      ..+++.-+|.+-..++    ..++-.+++.|+++|+.+|+    -|.....|+.--||+++...+
T Consensus       149 ~~~~~t~~v~~EspsNP~l~v~Di~~ia~ia~~~g~~~vVDnT~atP~~~~Pl~~GaDiVihS~T  213 (398)
T d1qgna_         149 LNQKKVNLFFTESPTNPFLRCVDIELVSKLCHEKGALVCIDGTFATPLNQKALALGADLVLHSAT  213 (398)
T ss_dssp             HHHSCEEEEEEESSCTTTCCCCCHHHHHHHHHHTTCEEEEECTTTCTTTCCTTTTTCSEEEECTT
T ss_pred             hccccceEEEccCccccccccchHHHHHHHHhhcCCEEEecceeeccccCCchhhCCCEEEEech
Confidence            2334444555544443    46788899999999987653    233333455445999987644

>d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=80.29  E-value=5.1  Score=27.35  Aligned_cols=60  Identities=20%  Similarity=0.241  Sum_probs=42.9

Q ss_pred             cCCCeEEEEeccchHHHHHHHHHHHHhcCCeeeecCCccccccccCCCCCCcEEEEEeCCCCcHHHHHHH-HHHHHcCCe
Q 019775           52 KCRGTIFFTGVGKSGFVANKISQTLISLGIKSGFLNPLDALHGDIGILSSDDILVMFSKSGNTEELLKVV-PCAKAKGAY  130 (336)
Q Consensus        52 ~a~~~I~i~G~G~s~~~a~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~dlvi~iS~sG~~~~~~~~~-~~ak~~g~~  130 (336)
                      .. +||.++|.|.   ++.+++..|.++|..+.++...+.+                 .++..+++.+.+ +.++++|++
T Consensus        21 ~p-~~v~IiGgG~---iG~E~A~~l~~~g~~Vtlv~~~~~i-----------------l~~~d~~~~~~~~~~l~~~gV~   79 (117)
T d1onfa2          21 ES-KKIGIVGSGY---IAVELINVIKRLGIDSYIFARGNRI-----------------LRKFDESVINVLENDMKKNNIN   79 (117)
T ss_dssp             CC-SEEEEECCSH---HHHHHHHHHHTTTCEEEEECSSSSS-----------------CTTSCHHHHHHHHHHHHHTTCE
T ss_pred             CC-CEEEEECCch---HHHHHHHHHHhccccceeeehhccc-----------------cccccHHHHHHHHHHHHhCCCE
Confidence            44 6999999886   4667778888999999988754432                 235566766665 467888877


Q ss_pred             EE
Q 019775          131 LV  132 (336)
Q Consensus       131 vi  132 (336)
                      +.
T Consensus        80 i~   81 (117)
T d1onfa2          80 IV   81 (117)
T ss_dssp             EE
T ss_pred             EE
Confidence            55

>d1pvda1 c.31.1.3 (A:182-360) Pyruvate decarboxylase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: DHS-like NAD/FAD-binding domain
superfamily: DHS-like NAD/FAD-binding domain
family: Pyruvate oxidase and decarboxylase, middle domain
domain: Pyruvate decarboxylase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=80.25  E-value=1.3  Score=33.14  Aligned_cols=49  Identities=6%  Similarity=-0.105  Sum_probs=37.3

Q ss_pred             hhHHHHHHHHHHcCCCeEEEEeccchH-HHHHHHHHHHHhcCCeeeecCC
Q 019775           40 LPHTLTFTQTLLKCRGTIFFTGVGKSG-FVANKISQTLISLGIKSGFLNP   88 (336)
Q Consensus        40 ~~~i~~~~~~i~~a~~~I~i~G~G~s~-~~a~~~~~~l~~~g~~~~~~~~   88 (336)
                      .+.+++++++|.+|++-++++|.|..+ ...+.+.....++|.++.....
T Consensus        17 ~~~i~~~~~~l~~AkrPvii~G~g~~~~~a~~~l~~lae~~~~Pv~tt~~   66 (179)
T d1pvda1          17 KEVIDTILALVKDAKNPVILADACCSRHDVKAETKKLIDLTQFPAFVTPM   66 (179)
T ss_dssp             HHHHHHHHHHHHHCSSEEEEECGGGTTTSTHHHHHHHHHHHCCCEEECGG
T ss_pred             HHHHHHHHHHHHhCCCCEEEEecccchhhhHHHHHHHHHhhCceEEeccc
Confidence            367899999999998889999988865 4556665555677888876553