Citrus Sinensis ID: 019779
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 336 | ||||||
| 255583426 | 438 | calmodulin binding protein, putative [Ri | 0.904 | 0.694 | 0.814 | 1e-148 | |
| 225438432 | 563 | PREDICTED: MLO9 protein [Vitis vinifera] | 0.901 | 0.538 | 0.807 | 1e-147 | |
| 224084036 | 579 | predicted protein [Populus trichocarpa] | 0.970 | 0.563 | 0.722 | 1e-141 | |
| 449524310 | 560 | PREDICTED: MLO-like protein 8-like [Cucu | 0.898 | 0.539 | 0.770 | 1e-139 | |
| 224096678 | 578 | predicted protein [Populus trichocarpa] | 0.913 | 0.531 | 0.765 | 1e-139 | |
| 261263492 | 487 | Mlo3 [Cucumis melo] | 0.898 | 0.620 | 0.770 | 1e-138 | |
| 356561007 | 583 | PREDICTED: MLO-like protein 8-like [Glyc | 0.904 | 0.521 | 0.762 | 1e-138 | |
| 356496537 | 598 | PREDICTED: MLO-like protein 8-like isofo | 0.910 | 0.511 | 0.753 | 1e-138 | |
| 356531333 | 577 | PREDICTED: MLO-like protein 8-like [Glyc | 0.904 | 0.526 | 0.752 | 1e-137 | |
| 449434076 | 560 | PREDICTED: LOW QUALITY PROTEIN: MLO-like | 0.898 | 0.539 | 0.760 | 1e-137 |
| >gi|255583426|ref|XP_002532472.1| calmodulin binding protein, putative [Ricinus communis] gi|223527797|gb|EEF29896.1| calmodulin binding protein, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 529 bits (1363), Expect = e-148, Method: Compositional matrix adjust.
Identities = 250/307 (81%), Positives = 276/307 (89%), Gaps = 3/307 (0%)
Query: 1 MVLGFISLILTFGQSYISKICIPSKVADTMLPCKADGKHDASDTSGDEHEHRRRLLWFQH 60
MVLGFISL+LTFGQ+YI++IC+ KVADTMLPCK D DT EHRRRLLWF+
Sbjct: 66 MVLGFISLLLTFGQTYITRICVSQKVADTMLPCKGDA---VLDTEESTEEHRRRLLWFER 122
Query: 61 RYLAAAATSTECEKGSEPLITVEALHQLHILIFFLAVFHVLYSAITMMLGRLKIRGWKKW 120
R+LA A T+T C++G EPLI+ + LHQLHILIFFLAVFHV+YS TM LGRLKIRGWK W
Sbjct: 123 RFLAGAETTTLCKEGHEPLISADGLHQLHILIFFLAVFHVVYSLTTMTLGRLKIRGWKAW 182
Query: 121 EEETSTHDYEFSNDPSRFRLTHETSFVRAHTSFWTRIPFFFYVGCFFRQFFRSVSRADYL 180
EEETSTHDYEFSNDPSRFRLTHETSFVR+HTSFWTRIPFFFYVGCFFRQFFRSVS+ADYL
Sbjct: 183 EEETSTHDYEFSNDPSRFRLTHETSFVRSHTSFWTRIPFFFYVGCFFRQFFRSVSKADYL 242
Query: 181 TLRNGFINVHLAPGSKFNFQKYIKRSLEDDFKIVVGVSPVLWTSFVVFLLLNVNGWHALF 240
TLRNGFI VHLAPGSKFNFQKYIKRSLEDDFK VVG+SP+LW SFV+FLL+NV GW ALF
Sbjct: 243 TLRNGFITVHLAPGSKFNFQKYIKRSLEDDFKYVVGISPILWASFVLFLLINVKGWQALF 302
Query: 241 WASLIPLIIILAIGTELQSILTKMALEISERHAVVQGIPLVQGSDQYFWFGRPQLVLHLI 300
WASLIP+IIILA+GTELQS+LTKMALEI+ERHAVVQG+PLVQGSD+YFWFGRPQLVL+LI
Sbjct: 303 WASLIPVIIILAVGTELQSVLTKMALEIAERHAVVQGMPLVQGSDKYFWFGRPQLVLYLI 362
Query: 301 HFALFQG 307
HFALFQ
Sbjct: 363 HFALFQN 369
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225438432|ref|XP_002276608.1| PREDICTED: MLO9 protein [Vitis vinifera] gi|296082569|emb|CBI21574.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
| >gi|224084036|ref|XP_002307201.1| predicted protein [Populus trichocarpa] gi|222856650|gb|EEE94197.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
| >gi|449524310|ref|XP_004169166.1| PREDICTED: MLO-like protein 8-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
| >gi|224096678|ref|XP_002310695.1| predicted protein [Populus trichocarpa] gi|222853598|gb|EEE91145.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
| >gi|261263492|gb|ACX55086.1| Mlo3 [Cucumis melo] | Back alignment and taxonomy information |
|---|
| >gi|356561007|ref|XP_003548777.1| PREDICTED: MLO-like protein 8-like [Glycine max] | Back alignment and taxonomy information |
|---|
| >gi|356496537|ref|XP_003517123.1| PREDICTED: MLO-like protein 8-like isoform 1 [Glycine max] | Back alignment and taxonomy information |
|---|
| >gi|356531333|ref|XP_003534232.1| PREDICTED: MLO-like protein 8-like [Glycine max] | Back alignment and taxonomy information |
|---|
| >gi|449434076|ref|XP_004134822.1| PREDICTED: LOW QUALITY PROTEIN: MLO-like protein 8-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 336 | ||||||
| TAIR|locus:2053888 | 593 | MLO8 "AT2G17480" [Arabidopsis | 0.970 | 0.549 | 0.681 | 3.3e-118 | |
| TAIR|locus:2156837 | 569 | MLO10 "AT5G65970" [Arabidopsis | 0.869 | 0.513 | 0.709 | 7.9e-117 | |
| TAIR|locus:2827607 | 542 | MLO7 "AT2G17430" [Arabidopsis | 0.883 | 0.547 | 0.683 | 2.1e-109 | |
| TAIR|locus:2051073 | 501 | MLO5 "AT2G33670" [Arabidopsis | 0.886 | 0.594 | 0.598 | 2.7e-93 | |
| TAIR|locus:2036650 | 460 | MLO9 "AT1G42560" [Arabidopsis | 0.907 | 0.663 | 0.579 | 4.3e-93 | |
| TAIR|locus:2200883 | 583 | MLO6 "AT1G61560" [Arabidopsis | 0.907 | 0.523 | 0.495 | 4.2e-79 | |
| TAIR|locus:2202064 | 573 | MLO2 "AT1G11310" [Arabidopsis | 0.907 | 0.532 | 0.484 | 1.9e-74 | |
| TAIR|locus:2056113 | 576 | MLO12 "AT2G39200" [Arabidopsis | 0.898 | 0.524 | 0.452 | 1.4e-71 | |
| TAIR|locus:2078292 | 508 | MLO3 "AT3G45290" [Arabidopsis | 0.863 | 0.570 | 0.435 | 6.3e-69 | |
| TAIR|locus:2132313 | 526 | MLO1 "AT4G02600" [Arabidopsis | 0.910 | 0.581 | 0.408 | 1.6e-61 |
| TAIR|locus:2053888 MLO8 "AT2G17480" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1164 (414.8 bits), Expect = 3.3e-118, P = 3.3e-118
Identities = 227/333 (68%), Positives = 264/333 (79%)
Query: 1 MVLGFISLILTFGQSYISKICIPSKVADTMLPCKADGKHDASDTSGDEHEHRRRLLWFQH 60
MVLGFISL+LTFGQ+YI ICIPS VA TMLPC A D +G+ H RRLL F+H
Sbjct: 94 MVLGFISLLLTFGQTYILDICIPSHVARTMLPCPAPNLKKEDDDNGESH---RRLLSFEH 150
Query: 61 RYLAAA-ATSTECEK-GSEPLITVEALHQLHILIFFLAVFHVLYSAITMMLGRLKIRGWK 118
R+L+ A+ T+C K G LI+ EALHQLHILIFFLA+FHVLYS +TMMLGRLKIRGWK
Sbjct: 151 RFLSGGEASPTKCTKEGYVELISAEALHQLHILIFFLAIFHVLYSFLTMMLGRLKIRGWK 210
Query: 119 KWEEETSTHDYEFSNDPSRFRLTHETSFVRAHTSFWTRIPFFFYVGCFFRQFFRSVSRAD 178
WE ETS+H+YEFS D SRFRLTHETSFVRAHTSFWTRIPFFFYVGCFFRQFFRSV R D
Sbjct: 211 HWENETSSHNYEFSTDTSRFRLTHETSFVRAHTSFWTRIPFFFYVGCFFRQFFRSVGRTD 270
Query: 179 YLTLRNGFINVHLAPGSKFNFQKYIKRSLEDDFKIVVGVSPVLWTSFVVFLLLNVNGWHA 238
YLTLRNGFI VHLAPGS+FNFQKYIKRSLEDDFK+VVGVSPVLW SFV+FLLLN++G+
Sbjct: 271 YLTLRNGFIAVHLAPGSQFNFQKYIKRSLEDDFKVVVGVSPVLWGSFVLFLLLNIDGFKM 330
Query: 239 LFWASXXXXXXXXXXGTELQSILTKMALEISERHAVVQGIPLVQGSDQYFWFGRPQLVLH 298
+F + GT+LQ+I+T+MAL I++RHAVVQG+PLVQG+D+YFWFGRP L+LH
Sbjct: 331 MFIGTAIPVIIILAVGTKLQAIMTRMALGITDRHAVVQGMPLVQGNDEYFWFGRPHLILH 390
Query: 299 LIHFALFQGWGPIS--MQLHHSSIICTCYSDGF 329
L+HFALFQ I+ + +S +CY F
Sbjct: 391 LMHFALFQNAFQITYFFWIWYSFGSDSCYHPNF 423
|
|
| TAIR|locus:2156837 MLO10 "AT5G65970" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2827607 MLO7 "AT2G17430" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2051073 MLO5 "AT2G33670" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2036650 MLO9 "AT1G42560" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2200883 MLO6 "AT1G61560" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2202064 MLO2 "AT1G11310" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2056113 MLO12 "AT2G39200" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2078292 MLO3 "AT3G45290" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2132313 MLO1 "AT4G02600" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
| MLO9 | SubName- Full=Chromosome chr7 scaffold_20, whole genome shotgun sequence; (563 aa) | |||||||
(Vitis vinifera) | ||||||||
| Sorry, there are no predicted associations at the current settings. |
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 336 | |||
| pfam03094 | 481 | pfam03094, Mlo, Mlo family | 1e-173 |
| >gnl|CDD|217363 pfam03094, Mlo, Mlo family | Back alignment and domain information |
|---|
Score = 488 bits (1258), Expect = e-173
Identities = 198/307 (64%), Positives = 236/307 (76%), Gaps = 9/307 (2%)
Query: 1 MVLGFISLILTFGQSYISKICIPSKVADTMLPCKADGKHDASDTSGDEHEHRRRLLWFQH 60
M+LGFISL+LT GQ+YISKIC+ S VA TMLPC A + R LL
Sbjct: 59 MLLGFISLLLTVGQTYISKICVSSNVASTMLPCSAGEEDSKPGKK----HTGRHLLAHGL 114
Query: 61 RYLAAAATSTEC-EKGSEPLITVEALHQLHILIFFLAVFHVLYSAITMMLGRLKIRGWKK 119
A A+ C EKG PL+++EALHQLHI IF LAVFHVLYSAITMMLGRLKIR WKK
Sbjct: 115 ----AEASPDYCAEKGKVPLVSLEALHQLHIFIFVLAVFHVLYSAITMMLGRLKIRQWKK 170
Query: 120 WEEETSTHDYEFSNDPSRFRLTHETSFVRAHTSFWTRIPFFFYVGCFFRQFFRSVSRADY 179
WE+ET + +YEFSNDPSRFR THETSFVR H + W++ F F+V CFFRQFF SV+++DY
Sbjct: 171 WEDETKSIEYEFSNDPSRFRHTHETSFVREHLNGWSKSRFLFWVQCFFRQFFGSVTKSDY 230
Query: 180 LTLRNGFINVHLAPGSKFNFQKYIKRSLEDDFKIVVGVSPVLWTSFVVFLLLNVNGWHAL 239
LTLR+GFI HLAP KFNF KYIKRSLEDDFK+VVG+SP LW V+FLLLNV+GW+
Sbjct: 231 LTLRHGFIMAHLAPNPKFNFHKYIKRSLEDDFKVVVGISPYLWVFAVLFLLLNVHGWNTY 290
Query: 240 FWASLIPLIIILAIGTELQSILTKMALEISERHAVVQGIPLVQGSDQYFWFGRPQLVLHL 299
FW S IPLI++LA+GT+L+ I++K+ALEI E+HAVV+G P+VQ SD+ FWFGRP+LVL L
Sbjct: 291 FWISFIPLILLLAVGTKLEHIISKLALEIQEKHAVVEGAPVVQPSDELFWFGRPRLVLFL 350
Query: 300 IHFALFQ 306
IHF LFQ
Sbjct: 351 IHFILFQ 357
|
A family of plant integral membrane proteins, first discovered in barley. Mutants lacking wild-type Mlo proteins show broad spectrum resistance to the powdery mildew fungus, and dysregulated cell death control, with spontaneous cell death in response to developmental or abiotic stimuli. Thus wild-type Mlo proteins are thought to be inhibitors of cell death whose deficiency lowers the threshold required to trigger the cascade of events that result in plant cell death. Mlo proteins are localised in the plasma membrane and possess seven transmembrane regions; thus the Mlo family is the only major higher plant family to possess 7 transmembrane domains. It has been suggested that Mlo proteins function as G-protein coupled receptors in plants; however the molecular and biological functions of Mlo proteins remain to be fully determined. Length = 481 |
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 336 | |||
| PF03094 | 478 | Mlo: Mlo family; InterPro: IPR004326 The Mlo-relat | 100.0 |
| >PF03094 Mlo: Mlo family; InterPro: IPR004326 The Mlo-related proteins are a family of plant integral membrane proteins, first discovered in barley | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-138 Score=1044.17 Aligned_cols=319 Identities=60% Similarity=1.034 Sum_probs=302.5
Q ss_pred CchhHHHHHHhhchhhcccccccccCcCCcccCCCCCCCCCCCCCCCchhhhhhhhhhhhhhhh--hccccccc-CCCcc
Q 019779 1 MVLGFISLILTFGQSYISKICIPSKVADTMLPCKADGKHDASDTSGDEHEHRRRLLWFQHRYLA--AAATSTEC-EKGSE 77 (336)
Q Consensus 1 MLLGFISLLLtv~q~~IskICIp~~~~~~~lPC~~~~~~~~~~~~~~~~~~~~~~l~~~rR~l~--~~~~~~~C-~~Gkv 77 (336)
|||||||||||++|++|+|||||++++++|+||+.+++.++.+ ++ ..+||+|+ +++++++| +||||
T Consensus 58 MlLGfiSLlLt~~q~~IskICIp~~~~~~~lPC~~~~~~~~~~-----~~------~~~r~ll~~~~~~~~~~C~~kGkv 126 (478)
T PF03094_consen 58 MLLGFISLLLTVFQNPISKICIPSSYASTMLPCKPPEESSKEG-----SS------HNRRRLLASGAAEGSDYCPKKGKV 126 (478)
T ss_pred HHHHHHHHHHHHHHHhHhHeecChhHHhcccCCCCcccccccc-----cc------hhhhhhhhhhcccccCcccccCcc
Confidence 8999999999999999999999999999999999655444321 10 14577776 34457899 46999
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccCCCCCceeEeeeccchhcccCCCCCc
Q 019779 78 PLITVEALHQLHILIFFLAVFHVLYSAITMMLGRLKIRGWKKWEEETSTHDYEFSNDPSRFRLTHETSFVRAHTSFWTRI 157 (336)
Q Consensus 78 pl~S~e~lhQLHiFIFvLAv~HV~ys~lTm~Lg~~Kir~Wk~WE~e~~~~~~~~~~dp~r~r~~~qt~F~r~h~~~ws~~ 157 (336)
||+|+|||||||||||||||+||+|||+||+||++|||+||+||+|+++++|+.++||+|+|++||++|+|+|.++|+++
T Consensus 127 pliS~egLHQLHIFIFVLAV~HV~Ys~lTm~Lg~~KIr~Wk~WE~e~~~~~~~~~~d~~r~~~~~qt~F~r~h~~~w~~~ 206 (478)
T PF03094_consen 127 PLISAEGLHQLHIFIFVLAVVHVLYSCLTMLLGRAKIRRWKKWEDEAQTDEYQFSNDPRRFRLTRQTTFVRRHTSFWSKS 206 (478)
T ss_pred ccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCcceeeeecccHHHHhhcCCcccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhHHHHHhHhhhCcCcchhhHHHHHHhHhhhhcCCCCCCcHHHHHHHHHhhcccccceeChHHHHHHHHHHHhccCCcc
Q 019779 158 PFFFYVGCFFRQFFRSVSRADYLTLRNGFINVHLAPGSKFNFQKYIKRSLEDDFKIVVGVSPVLWTSFVVFLLLNVNGWH 237 (336)
Q Consensus 158 ~~l~wi~~FfrQF~~SV~k~DYltLR~gFI~~H~~~~~~FdFhkYi~RsLEdDFk~VVGIS~~lW~~vviFlllnv~Gw~ 237 (336)
+++.|++|||||||+||+|+||+|||+|||++|++|++||||||||+||||||||+||||||++|++||+|+|+|++|||
T Consensus 207 ~~~~wi~~FfrQF~~SV~k~DYltLR~gFI~~H~~~~~~FDFh~Yi~RsLEdDFk~VVGIS~~lW~~vv~fll~nv~gw~ 286 (478)
T PF03094_consen 207 PVLSWIVCFFRQFYGSVTKSDYLTLRHGFITAHLLPNPKFDFHKYIKRSLEDDFKVVVGISWYLWAFVVLFLLLNVHGWH 286 (478)
T ss_pred hhHHhHHHHHHHhhccccHHHHHHHHHHHHHhhcCCCCCCChHHHHHHHHHHHHHHheeccccHhhhhheeeeecCCcce
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhHHHHHHHHHhhhHHHHHHHHHHHHhhhcccccCccccccCCCccccCCchHHHHHHHHHHhhhhHHHHHHHHH
Q 019779 238 ALFWASLIPLIIILAIGTELQSILTKMALEISERHAVVQGIPLVQGSDQYFWFGRPQLVLHLIHFALFQGWGPISMQLHH 317 (336)
Q Consensus 238 ~yfWlsfiPlillLlVGtKLq~II~~la~ei~e~~~~v~g~~~v~psD~lFWF~rP~llL~LIHfiLFQNAFelAfF~W~ 317 (336)
+|||+||||++++|+||||||+||++||+|++|++++++|+|+|||+|++|||+||++||+||||||||||||||||+|+
T Consensus 287 ~yfW~sfipl~liL~VGtKLq~Ii~~ma~ei~~~~~~~~g~p~v~p~d~~FWF~rP~llL~lihfilFqnAFela~f~w~ 366 (478)
T PF03094_consen 287 TYFWLSFIPLILILLVGTKLQHIITKMALEIAERHAVIKGTPLVKPSDDLFWFGRPRLLLHLIHFILFQNAFELAFFFWI 366 (478)
T ss_pred eEeehhHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccCcccccccccceecCCcHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HH--hhhccccCCCC
Q 019779 318 SS--IICTCYSDGFT 330 (336)
Q Consensus 318 ~~--~~~~~~~~~~~ 330 (336)
|| |.+|||+++.+
T Consensus 367 ~~~~g~~sC~~~~~~ 381 (478)
T PF03094_consen 367 WWQFGFDSCFMENTE 381 (478)
T ss_pred HhcCCCceeEecCcc
Confidence 99 88999999754
|
Mutants lacking wild-type Mlo proteins show broad spectrum resistance to the powdery mildew fungus, and dysregulated cell death control, with spontaneous cell death in response to developmental or abiotic stimuli. Thus wild-type Mlo proteins are thought to be inhibitors of cell death whose deficiency lowers the threshold required to trigger the cascade of events that result in plant cell death. Mlo proteins are localized in the plasma membrane and possess seven transmembrane regions; thus the Mlo family is the only major higher plant family to possess 7 transmembrane domains. It has been suggested that Mlo proteins function as G-protein coupled receptors in plants []; however the molecular and biological functions of Mlo proteins is still unclear.; GO: 0008219 cell death, 0016021 integral to membrane |
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 336 | |||
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 6e-04 |
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 40.6 bits (94), Expect = 6e-04
Identities = 46/315 (14%), Positives = 75/315 (23%), Gaps = 96/315 (30%)
Query: 1 MVLGFISLILTFGQSYISKI-CIPSKVADTMLPCKADGKHDASDTSGDEHEHRRRLLWFQ 59
+ ++ F +++ C V D + + D S D RL W
Sbjct: 14 HQYQYKDILSVFEDAFVDNFDC--KDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFW-- 69
Query: 60 HRYLAAAATSTECEKGSEPLITVEALHQLHILIFFLAVFHVLYSAITMMLGRLKIRGWKK 119
T K E V+ F V + Y +
Sbjct: 70 ----------TLLSKQEE---MVQK--------FVEEVLRINYKFL-----------MSP 97
Query: 120 WEEETSTHDYEFSNDPSRFRLTHETSFVRAHTSFWTRIPFFFYVGCFFRQFFRSVSRAD- 178
+ E PS ++ + F +VSR
Sbjct: 98 IKTEQ--------RQPSM----MTRMYIEQRDRLYNDNQVFAK---------YNVSRLQP 136
Query: 179 YLTLRNG--------FINVHLAPGSKFNFQKYIKRSLEDDFKIVVGVSPVLWTSFVVFLL 230
YL LR + + GS K + V
Sbjct: 137 YLKLRQALLELRPAKNVLIDGVLGSG-------KTWV---------ALDVC--LSYKVQC 178
Query: 231 LNVNGWHALFWASLIPLIIILAIGTELQSILTKMALEISERHAVVQGIPL----VQGSDQ 286
+FW +L + LQ +L ++ + R I L +Q +
Sbjct: 179 KMDFK---IFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELR 235
Query: 287 YFWFGRPQ----LVL 297
+P LVL
Sbjct: 236 RLLKSKPYENCLLVL 250
|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
No hit with probability above 80.00
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
No hit with probability above 80.00