Citrus Sinensis ID: 019782

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330------
Protein Sequence
MPNLFSKDSGISSACSASMNGVSGPLWGSSSESVVQQSSMSGCLSLKMAVPRQQFANTKQLSFQFQDQESSSTQSTGQSCSKEACVKDDNPSRQSVVSAPPGFNGIHVKPVGGHSKLASSMGPHDFVFTPPHVDYNQSVAPFQLHYAEPYFSGLLSPFLPPQAMQIHHPQMMGMAPARVPLPLELAEDEPIYVNAKQYRAILRRRQYRAKLEAQNKLVKGRKPYLHESRHAHAMNRARGSGGRFLNTKKVPESKRNLTNNELDMSESEAHRENYKDGGSTTSCSDITSASNSEDIFQQPEFGFSGYSSIGSRSMQGCSATMNGDGNIHRFLSSVDG
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEcHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHcccccccccccccccHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccccccccccccccccccccccccccccEEcccccHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEcccccccccccccccccccccccccccccccccccccccccccccccccEEEcHHHHHHHHHHHHHHHHHHHHcccHHcccccHcHHHHHHHHHccccccccEccccHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
mpnlfskdsgissacsasmngvsgplwgsssesvvqqssmsgclslkmavprqqfantkqlsfqfqdqessstqstgqscskeacvkddnpsrqsvvsappgfngihvkpvgghsklassmgphdfvftpphvdynqsvapfqlhyaepyfsgllspflppqamqihhpqmmgmaparvplplelaedepiyvNAKQYRAILRRRQYRAKLEAQNKLvkgrkpylhesRHAHAMnrargsggrflntkkvpeskrnltnneldmseseahrenykdggsttscsditsasnsedifqqpefgfsgyssigsrsmqgcsatmngdgniHRFLSSVDG
Flexible Loop (DISEMBL)
MPNLFSKDSGISSACSASMNGVSGPLWGSSSESVVQQSSMSGCLSLKMAVPRQQFANTKQLSFQFQDQessstqstgqscskeacvkddnpsrqsvVSAPPGFNGIHVKPVGGHSKLASSMGPHDFVFTPPHVDYNQSVAPFQLHYAEPYFSGLLSPFLPPQAMQIHHPQMMGMAPARVPLPLELAEDEPIYVNAKQYRAILRRRQYRAKLEaqnklvkgrkpylhesrhahamnrargsggrflntkkvpeskrnltnneldmseseahrenykdggsTTSCSDITSASNSEDIFQQPEFGFSGYSSIGSRSMQGCSATMNGDGNIHRFLSSVDG
Low Complexity Region (SEG)
MPNLFSKDSGISSACSASMNGVSGPLWGsssesvvqqssmsGCLSLKMAVPRQQFANTKqlsfqfqdqessstqstgqscsKEACVKDDNPSRQSVVSAPPGFNGIHVKPVGGHSKLASSMGPHDFVFTPPHVDYNQSVAPFQLHYAEPYFSGLLSPFLPPQAMQIHHPQMMGMAPARVPLPLELAEDEPIYVNAKQYRAILRRRQYRAKLEAQNKLVKGRKPYLHESRHAHAMNRARGSGGRFLNTKKVPESKRNLTNNELDMSESEAHRENYKDGGSTTSCSDITSASNSEDIFQQPEFGFSGYSSIGSRSMQGCSATMNGDGNIHRFLSSVDG
Disordered region (IsUnstruct)
***************************************************************************************************************************HDFVFTPPHVDYNQSVAPFQLHYAEPYFSGLLSPFLPPQAMQIHH***MGMAPARVPLPLELAEDEPIYVNAKQYRAILRRRQYRAKLE****************************************************************************************************************************
Disordered Region (DISOPRED)
*********************VS**LW****************************************************************************************************************************SGL*******************************AEDEPIYVNAKQYRAILRRRQY*********************************************************************************************************************************
Disordered Region (DISEMBL)
***********SSACSASMNGVSGPL**************SGCLSLKMAVPRQQFANTKQLSF*********************************VSAPPGFNGIHVKPVGGHSKLASSMGPHDFVFTPPHVDYNQSVAPFQLHYAEPYFSGLLSPFLPPQAMQIHHPQMMGMAPARVPLPLELAEDEPIYVNAKQYRAILRRRQYRAKLEAQNKLVKGRKPYLHESRHAHAMNRARGSGGRFLNTKKVPESKRNLTNNELD***************************NSEDIFQQPEFGFSGYSSIGSRSMQGCSATMNGDGNIHRFLSSVDG
Disordered Region (DISPRO)
*********GISSACSASMNGVSGPLWG****************SLKMAVPRQQFANTKQLSF*************************************************************DFVFTPPHVDYNQSVAPFQLHYAEPYFSGLLSPFLPPQAMQIHHPQMMGMAPARVPLPLELAEDEPIYVNAKQYRAILRRRQYRAKLEAQNKLVKGRKPYLHESRHAHAMNRARGSGGRFL*******************************************************************************************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MPNLFSKDSGISSACSASMNGVSGPLWGSSSESVVQQSSMSGCLSLKMAVPRQQFANTKQLSFQFQDQESSSTQSTGQSCSKEACVKDDNPSRQSVVSAPPGFNGIHVKPVGGHSKLASSMGPHDFVFTPPHVDYNQSVAPFQLHYAEPYFSGLLSPFLPPQAMQIHHPQMMGMAPARVPLPLELAEDEPIYVNAKQYRAILRRRQYRAKLEAQNKLVKGRKPYLHESRHAHAMNRARGSGGRFLNTKKVPESKRNLTNNELDMSESEAHRENYKDGGSTTSCSDITSASNSEDIFQQPEFGFSGYSSIGSRSMQGCSATMNGDGNIHRFLSSVDG
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	336	2.2.26 [Sep-21-2011]
Q93ZH2	340	Nuclear transcription fac	yes	no	0.934	0.923	0.459	1e-59
Q9LNP6	328	Nuclear transcription fac	no	no	0.833	0.853	0.447	1e-47
Q9LVJ7	308	Nuclear transcription fac	no	no	0.794	0.866	0.437	1e-42
Q9SYH4	308	Nuclear transcription fac	no	no	0.827	0.902	0.4	6e-42
Q84JP1	190	Nuclear transcription fac	no	no	0.360	0.636	0.540	7e-30
Q945M9	303	Nuclear transcription fac	no	no	0.303	0.336	0.526	4e-26
Q9LXV5	272	Nuclear transcription fac	no	no	0.300	0.371	0.514	9e-24
Q8VY64	198	Nuclear transcription fac	no	no	0.291	0.494	0.518	1e-23
P23708	346	Nuclear transcription fac	yes	no	0.229	0.222	0.625	2e-21
P23511	347	Nuclear transcription fac	yes	no	0.229	0.221	0.625	2e-21

>sp|Q93ZH2|NFYA3_ARATH Nuclear transcription factor Y subunit A-3 OS=Arabidopsis thaliana GN=NFYA3 PE=2 SV=2

 Score =  230 bits (587), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 158/344 (45%), Positives = 197/344 (57%), Gaps = 30/344 (8%)

Query: 4   LFSKDSGISSACSASMNGVSGPLWGSS-SESVVQQSSMSGCLSLKMAVPRQQFANTKQLS 62
           L  KDS   S        +S   WG   ++SV  +   +  LSLK+         TKQ+S
Sbjct: 6   LNKKDSATHSTLPYLNTSIS---WGVVPTDSVANRRGSAESLSLKVDSRPGHIQTTKQIS 62

Query: 63  FQFQDQESSSTQSTGQSCSKEACVKDDNPSRQSVVSAPPGFNGIHVKPVGGHSKLASSMG 122
           FQ  DQ+SSSTQSTGQS ++ A   DDNPSRQ   SA  G      K    + K  S  G
Sbjct: 63  FQ--DQDSSSTQSTGQSYTEVASSGDDNPSRQISFSAKSGSEITQRKGFASNPKQGSMTG 120

Query: 123 PHDFVFTPPHVDYNQSVAPFQLHYAEPYFSGLLSPFLPPQAMQIHHPQMMGMAPARVPLP 182
             +  F P       + A F  HYA+P++ GLL+    PQA   + PQM+ M P RVPLP
Sbjct: 121 FPNIHFAP-------AQANFSFHYADPHYGGLLAATYLPQAPTCN-PQMVSMIPGRVPLP 172

Query: 183 LELAEDEPIYVNAKQYRAILRRRQYRAKLEAQNKLVKGRKPYLHESRHAHAMNRARGSGG 242
            EL E +P++VNAKQY AI+RRRQ RAKLEAQNKL++ RKPYLHESRH HA+ R RGSGG
Sbjct: 173 AELTETDPVFVNAKQYHAIMRRRQQRAKLEAQNKLIRARKPYLHESRHVHALKRPRGSGG 232

Query: 243 RFLNTKKVPESKRNL-------------TNNELDMSESEAHR-ENYKDGGSTTSCSDITS 288
           RFLNTKK+ +                   N + +MS  EAH  +N KD  STTS SDITS
Sbjct: 233 RFLNTKKLLQESEQAAAREQEQDKLGQQVNRKTNMSRFEAHMLQNNKDRSSTTSGSDITS 292

Query: 289 ASNSEDIFQQPEFGFSGYSSIGSRSM--QGCSATMNGDGNIHRF 330
            S+  DIF   EF FSG+ +  +R+M   G S  M+G G++H F
Sbjct: 293 VSDGADIFGHTEFQFSGFPTPINRAMLVHGQSNDMHGGGDMHHF 336

Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9LNP6|NFYA8_ARATH Nuclear transcription factor Y subunit A-8 OS=Arabidopsis thaliana GN=NFYA8 PE=2 SV=2

 Score =  190 bits (482), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 145/324 (44%), Positives = 183/324 (56%), Gaps = 44/324 (13%)

Query: 27  WGSSSESVVQQSSMSGCLSLKMAVPR-QQFANTKQLSFQFQDQESSSTQSTGQSCSKEAC 85
           WG  ++S    + ++  LSLK+   R ++  NTK +SFQ  DQ+SSST S+ QS +    
Sbjct: 25  WGLPTKS----NGVTESLSLKVVDARPERLINTKNISFQ--DQDSSSTLSSAQSSNDVTS 78

Query: 86  VKDDNPSRQSVVSAP----PGFNGIHVKPVGGHSKLASSMGPHDFVFTPPHVDYNQSVAP 141
             DDNPSRQ    A      GF     K     S  +S+ G  D   +P       S A 
Sbjct: 79  SGDDNPSRQISFLAHSDVCKGFEETQRKRFAIKSG-SSTAGIADIHSSP-------SKAN 130

Query: 142 FQLHYAEPYFSGLLSPFLPPQAMQIHHPQMMGMAPARVPLPLELAEDEPIYVNAKQYRAI 201
           F  HYA+P+F GL+     PQA  I +PQM      RVPLP +L E+EP++VNAKQ+ AI
Sbjct: 131 FSFHYADPHFGGLMPAAYLPQAT-IWNPQM-----TRVPLPFDLIENEPVFVNAKQFHAI 184

Query: 202 LRRRQYRAKLEAQNKLVKGRKPYLHESRHAHAMNRARGSGGRFLNTKKVPESKRNLTNNE 261
           +RRRQ RAKLEAQNKL+K RKPYLHESRH HA+ R RGSGGRFLNTKK+ ES    T+ +
Sbjct: 185 MRRRQQRAKLEAQNKLIKARKPYLHESRHVHALKRPRGSGGRFLNTKKLQES----TDPK 240

Query: 262 LDMSESEAHR------------ENYKD-GGSTTSCSDITSASNSEDIFQQPEFGFSGYSS 308
            DM   + H             +N  D   STTS SDITSAS+S ++F   EF  S   S
Sbjct: 241 QDMPIQQQHATGNMSRFVLYQLQNSNDCDCSTTSRSDITSASDSVNLFGHSEFLISDCPS 300

Query: 309 IGSRSM--QGCSATMNGDGNIHRF 330
             + +M   G S  M+G  N H F
Sbjct: 301 QTNPTMYVHGQSNDMHGGRNTHHF 324

Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LVJ7|NFYA6_ARATH Nuclear transcription factor Y subunit A-6 OS=Arabidopsis thaliana GN=NFYA6 PE=2 SV=1

 Score =  174 bits (440), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 130/297 (43%), Positives = 162/297 (54%), Gaps = 30/297 (10%)

Query: 29  SSSESVVQQSSMSGCLSLKMAVPRQQFANTKQLSFQFQDQESSSTQSTGQSCSKEACVKD 88
           S   SV   S++ G  SL            KQ  FQ Q  +SSSTQSTG     E     
Sbjct: 17  SWDNSVFTNSNVQGSSSLTDNNTLSLTMEMKQTGFQMQHYDSSSTQSTGGESYSEVASLS 76

Query: 89  DNPSRQS---VVSAPPGFNGIHVKPVGGHSKLASSMGPHDFVFTPPHVDYNQSVAPFQLH 145
           +  +R     VV+   G+      P+G HS    S    D V  P         A + LH
Sbjct: 77  EPTNRYGHNIVVTHLSGYKENPENPIGSHSISKVSQ---DSVVLP------IEAASWPLH 127

Query: 146 -YAEPYFSGLLS-PFLPPQAMQIHHPQMMGMAPARVPLPLELAEDEPIYVNAKQYRAILR 203
               P+F+G LS P+     +Q  HPQ+ G+ P+R+PLP  + E+EPI+VNAKQY+AILR
Sbjct: 128 GNVTPHFNGFLSFPYASQHTVQ--HPQIRGLVPSRMPLPHNIPENEPIFVNAKQYQAILR 185

Query: 204 RRQYRAKLEAQNKLVKGRKPYLHESRHAHAMNRARGSGGRFLNTKKVPESKRNLT----- 258
           RR+ RAKLEAQNKL+K RKPYLHESRH HA+ R RGSGGRFLNTKK  ES  +L+     
Sbjct: 186 RRERRAKLEAQNKLIKVRKPYLHESRHLHALKRVRGSGGRFLNTKKHQESNSSLSPPFLI 245

Query: 259 ------NNELDMSESEAHRENYKDGGSTTSCSDITSASNSEDIFQQ-PEFGFSGYSS 308
                 N+     + +  R       STTSCSDIT   N+ D+FQQ P+F FSGY S
Sbjct: 246 PPHVFKNSPGKFRQMDISRGGVVSSVSTTSCSDIT--GNNNDMFQQNPQFRFSGYPS 300

Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SYH4|NFYA5_ARATH Nuclear transcription factor Y subunit A-5 OS=Arabidopsis thaliana GN=NFYA5 PE=2 SV=1

 Score =  171 bits (433), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 116/290 (40%), Positives = 159/290 (54%), Gaps = 12/290 (4%)

Query: 27  WGSSSESVVQ--QSSMSGCLSLKMAVPRQQFANTKQLSFQFQDQESSSTQSTGQSCSKEA 84
           WG+S  +     Q S S  L+  M +   Q    K    Q Q+Q+S+S+QST +      
Sbjct: 12  WGNSMPTTNSNIQGSESFSLTKDMIMSTTQLPAMKHSGLQLQNQDSTSSQSTEEESGGGE 71

Query: 85  CVKDDNPSRQSVVSAPPGFNGIHV---KPVGGHSK--LASSMGPHDFVFTPPHVDYNQSV 139
                   R          +G      KP+  ++K    SSM   D VF  P        
Sbjct: 72  VASFGEYKRYGCSIVNNNLSGYIENLGKPIENYTKSITTSSMVSQDSVFPAP----TSGQ 127

Query: 140 APFQLHYAEP-YFSGLLSPFLPPQAMQIHHPQMMGMAPARVPLPLELAEDEPIYVNAKQY 198
             + L  AE  +F+G L+P        + H +MMG+  +RVPLP  + E+EPI+VNAKQY
Sbjct: 128 ISWSLQCAETSHFNGFLAPEYASTPTALPHLEMMGLVSSRVPLPHHIQENEPIFVNAKQY 187

Query: 199 RAILRRRQYRAKLEAQNKLVKGRKPYLHESRHAHAMNRARGSGGRFLNTKKVPESKRNLT 258
            AILRRR++RAKLEAQNKL+K RKPYLHESRH HA+ RARGSGGRFLNTKK+ ES  +L 
Sbjct: 188 HAILRRRKHRAKLEAQNKLIKCRKPYLHESRHLHALKRARGSGGRFLNTKKLQESSNSLC 247

Query: 259 NNELDMSESEAHRENYKDGGSTTSCSDITSASNSEDIFQQPEFGFSGYSS 308
           ++++   ++ +   +    G  +S    +S SN  ++FQ P+F FSGY S
Sbjct: 248 SSQMANGQNFSMSPHGGGSGIGSSSISPSSNSNCINMFQNPQFRFSGYPS 297

Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters (By similarity). Involved in the blue light (BL) and abscisic acid (ABA) signaling pathways.

Arabidopsis thaliana (taxid: 3702)

>sp|Q84JP1|NFYA7_ARATH Nuclear transcription factor Y subunit A-7 OS=Arabidopsis thaliana GN=NFYA7 PE=2 SV=1

 Score =  131 bits (330), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 67/124 (54%), Positives = 85/124 (68%), Gaps = 3/124 (2%)

Query: 138 SVAPFQLHYAEPYFSGLLSPFLPPQAMQIHHPQMMGMAPARVPLPLELAEDEPIYVNAKQ 197
           S+AP Q  Y +PY+  + +P  PPQ     H Q+MG+    VPLP +  E EP++VNAKQ
Sbjct: 52  SMAPGQYPYPDPYYRSIFAP--PPQPYTGVHLQLMGVQQQGVPLPSDAVE-EPVFVNAKQ 108

Query: 198 YRAILRRRQYRAKLEAQNKLVKGRKPYLHESRHAHAMNRARGSGGRFLNTKKVPESKRNL 257
           Y  ILRRRQ RA+LE+QNK++K RKPYLHESRH HA+ R RG GGRFLN KK  E   + 
Sbjct: 109 YHGILRRRQSRARLESQNKVIKSRKPYLHESRHLHAIRRPRGCGGRFLNAKKEDEHHEDS 168

Query: 258 TNNE 261
           ++ E
Sbjct: 169 SHEE 172

Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.

Arabidopsis thaliana (taxid: 3702)

>sp|Q945M9|NFYA9_ARATH Nuclear transcription factor Y subunit A-9 OS=Arabidopsis thaliana GN=NFYA9 PE=2 SV=1

 Score =  119 bits (297), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 60/114 (52%), Positives = 76/114 (66%), Gaps = 12/114 (10%)

Query: 146 YAEPYFSGLLSPFLPPQAMQIHHPQMM----GMAPARVPLPLELAEDEPIYVNAKQYRAI 201
           Y +PY++G++  +        HHP       GM  +R+PLP E+A+ EP++VNAKQY+AI
Sbjct: 127 YQDPYYAGVMGAYG-------HHPLGFVPYGGMPHSRMPLPPEMAQ-EPVFVNAKQYQAI 178

Query: 202 LRRRQYRAKLEAQNKLVKGRKPYLHESRHAHAMNRARGSGGRFLNTKKVPESKR 255
           LRRRQ RAK E + KL+K RKPYLHESRH HAM R RG+GGRF        SKR
Sbjct: 179 LRRRQARAKAELEKKLIKSRKPYLHESRHQHAMRRPRGTGGRFAKKTNTEASKR 232

Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LXV5|NFYA1_ARATH Nuclear transcription factor Y subunit A-1 OS=Arabidopsis thaliana GN=NFYA1 PE=2 SV=1

 Score =  111 bits (277), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 54/105 (51%), Positives = 70/105 (66%), Gaps = 4/105 (3%)

Query: 146 YAEPYFSGLLSPFLPPQAMQIHHPQMMGMAPARVPLPLELAEDEPIYVNAKQYRAILRRR 205
           Y +PY+ GL+  +      Q+     +GM   R  LPL++A+ EP+YVNAKQY  ILRRR
Sbjct: 133 YQDPYYGGLMGAY---GHQQLGFRPYLGMPRERTALPLDMAQ-EPVYVNAKQYEGILRRR 188

Query: 206 QYRAKLEAQNKLVKGRKPYLHESRHAHAMNRARGSGGRFLNTKKV 250
           + RAK E + K+++ RKPYLHESRH HAM RAR SGGRF    +V
Sbjct: 189 KARAKAELERKVIRDRKPYLHESRHKHAMRRARASGGRFAKKSEV 233

Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8VY64|NFYA4_ARATH Nuclear transcription factor Y subunit A-4 OS=Arabidopsis thaliana GN=NFYA4 PE=2 SV=1

 Score =  111 bits (277), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 57/110 (51%), Positives = 72/110 (65%), Gaps = 12/110 (10%)

Query: 146 YAEPYFSGLLSPFLPPQAMQIHHP------QMMGMAPARVPLPLELAEDEPIYVNAKQYR 199
           Y +PY+  + +     Q   + HP      Q+MGM    VPL  +  E EP++VNAKQY 
Sbjct: 55  YPDPYYRSVFA-----QQAYLPHPYPGVQLQLMGMQQPGVPLQCDAVE-EPVFVNAKQYH 108

Query: 200 AILRRRQYRAKLEAQNKLVKGRKPYLHESRHAHAMNRARGSGGRFLNTKK 249
            ILRRRQ RAKLEA+N+ +K +KPY+HESRH HA+ R RG GGRFLN KK
Sbjct: 109 GILRRRQSRAKLEARNRAIKAKKPYMHESRHLHAIRRPRGCGGRFLNAKK 158

Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.

Arabidopsis thaliana (taxid: 3702)

>sp|P23708|NFYA_MOUSE Nuclear transcription factor Y subunit alpha OS=Mus musculus GN=Nfya PE=1 SV=2

 Score =  103 bits (257), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 50/80 (62%), Positives = 60/80 (75%), Gaps = 3/80 (3%)

Query: 173 GMAPA--RVPLP-LELAEDEPIYVNAKQYRAILRRRQYRAKLEAQNKLVKGRKPYLHESR 229
           G  PA  R+PLP  E+ E+EP+YVNAKQY  IL+RRQ RAKLEA+ K+ K R+ YLHESR
Sbjct: 243 GSVPAIQRIPLPGAEMLEEEPLYVNAKQYHRILKRRQARAKLEAEGKIPKERRKYLHESR 302

Query: 230 HAHAMNRARGSGGRFLNTKK 249
           H HAM R RG GGRF + K+
Sbjct: 303 HRHAMARKRGEGGRFFSPKE 322

Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters, for example in type 1 collagen, albumin and beta-actin genes.

Mus musculus (taxid: 10090)

>sp|P23511|NFYA_HUMAN Nuclear transcription factor Y subunit alpha OS=Homo sapiens GN=NFYA PE=1 SV=2

 Score =  103 bits (257), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 50/80 (62%), Positives = 60/80 (75%), Gaps = 3/80 (3%)

Query: 173 GMAPA--RVPLP-LELAEDEPIYVNAKQYRAILRRRQYRAKLEAQNKLVKGRKPYLHESR 229
           G  PA  R+PLP  E+ E+EP+YVNAKQY  IL+RRQ RAKLEA+ K+ K R+ YLHESR
Sbjct: 244 GSVPAIQRIPLPGAEMLEEEPLYVNAKQYHRILKRRQARAKLEAEGKIPKERRKYLHESR 303

Query: 230 HAHAMNRARGSGGRFLNTKK 249
           H HAM R RG GGRF + K+
Sbjct: 304 HRHAMARKRGEGGRFFSPKE 323

Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters, for example in type 1 collagen, albumin and beta-actin genes.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	336
255560677	335	Nuclear transcription factor Y subunit A	0.928	0.931	0.568	3e-84
351727963	348	CCAAT-binding transcription factor famil	0.913	0.882	0.517	2e-65
225442180	336	PREDICTED: nuclear transcription factor	0.886	0.886	0.459	2e-63
297842025	335	hypothetical protein ARALYDRAFT_339498 [	0.925	0.928	0.469	1e-60
18410195	340	nuclear transcription factor Y subunit A	0.934	0.923	0.459	6e-58
147772926	311	hypothetical protein VITISV_021401 [Viti	0.812	0.877	0.434	7e-58
2398525	340	Transcription factor [Arabidopsis thalia	0.934	0.923	0.459	8e-58
42572087	341	nuclear transcription factor Y subunit A	0.934	0.920	0.457	2e-56
388523195	300	nuclear transcription factor Y subunit A	0.788	0.883	0.5	8e-56
297850154	326	CCAAT-binding transcription factor (CBF-	0.901	0.929	0.455	2e-54

>gi|255560677|ref|XP_002521352.1| Nuclear transcription factor Y subunit A-3, putative [Ricinus communis] gi|223539430|gb|EEF41020.1| Nuclear transcription factor Y subunit A-3, putative [Ricinus communis]

 Score =  318 bits (814), Expect = 3e-84,   Method: Compositional matrix adjust.
 Identities = 194/341 (56%), Positives = 227/341 (66%), Gaps = 29/341 (8%)

Query: 1   MPNLFSKDSGISSACSASMNGVSGPLWGSSSESVVQQSSMSGCLSLKMAVPRQQFANTKQ 60
           M NL  K+SG+ S  S S   V   L G+S+ES V QSS+S  L L M VP QQF  +K+
Sbjct: 5   MHNLCKKESGMCSLLSTSPYIVGRQLLGNSTESTVHQSSLSESLGLTMGVPHQQFHGSKK 64

Query: 61  LSFQFQDQESSSTQSTGQSCSKEACVKDDNPSRQSVVSAPPGFNGIHVKPVGGHSKLASS 120
           L+FQFQDQ+SSSTQSTGQS  +             V S   GFN  H K  GGH KL S 
Sbjct: 65  LTFQFQDQDSSSTQSTGQSYPE-------------VASMGEGFNESHEKAEGGHVKLVSL 111

Query: 121 MGPHDFVFTPPHVDYNQSVAPFQLHYAEPYFSGLLSPFLPPQAMQIHHPQMMGMAPARVP 180
           MG  DF+F P   D +QSVA   LH+ EPYF GLL+ +  PQ+M IHHPQM GM  ARVP
Sbjct: 112 MGTQDFIF-PSQFDCSQSVARVPLHFTEPYFGGLLAAY-GPQSM-IHHPQMFGMTSARVP 168

Query: 181 LPLELAEDEPIYVNAKQYRAILRRRQYRAKLEAQNKLVKGRKPYLHESRHAHAMNRARGS 240
           LP    EDEPI+VNAKQY AILRRR+YRAKLEAQNKL+K RKPYLHESRH HA+ RARGS
Sbjct: 169 LPPVFTEDEPIFVNAKQYAAILRRRRYRAKLEAQNKLIKARKPYLHESRHLHALRRARGS 228

Query: 241 GGRFLNTKKVPESKRNLTNNELD-----------MSESEAHR-ENYKDGGSTTSCSDITS 288
           GGRFLN KK+ +S     ++ LD           +SESE H  EN++DG STTSCSD+TS
Sbjct: 229 GGRFLNAKKLEDSNPTPASHGLDGAGTQFHLAGNISESEVHHPENHRDGASTTSCSDVTS 288

Query: 289 ASNSEDIF-QQPEFGFSGYSSIGSRSMQGCSATMNGDGNIH 328
           ASNS+DIF QQ EF FSGY S    +M+G S  M+G G+ H
Sbjct: 289 ASNSDDIFQQQTEFKFSGYPSHFVGTMRGRSVGMHGGGSQH 329

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351727963|ref|NP_001235387.1| CCAAT-binding transcription factor family protein [Glycine max] gi|257136301|gb|ACV44452.1| CCAAT-binding transcription factor family protein [Glycine max]

 Score =  255 bits (652), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 179/346 (51%), Positives = 217/346 (62%), Gaps = 39/346 (11%)

Query: 1   MPNLFSKDSGISSACSASMNGVSGPLWGSSSESVVQQSSMSGCLSLKMAVPRQQFANTKQ 60
           M NL    SG +   S ++   S   WG+SSES VQQSSMS  LSLKM+V  QQ   TK 
Sbjct: 1   MKNLCENGSGPTHLTSYALGCSS---WGTSSESDVQQSSMSKSLSLKMSVLPQQCHKTKP 57

Query: 61  LSFQFQDQESSSTQS-------TGQSCSKEACVKDDNPSRQSVVSAPPGFNGIHVKPVGG 113
           LSFQ+QD++SSSTQS        G + S +  V+  N S  S  +   G      K V G
Sbjct: 58  LSFQYQDRDSSSTQSTGQSYPEVGSAQSGQISVQCSNSSASSTHNTTGG------KSVEG 111

Query: 114 HSKLASSMGPHDFVFTPPHVDYNQSVAPFQLHYAEPYFSGLLS-PFLPPQAMQIHHPQMM 172
              + S++G  D  F P  + YNQS+A    H+AEP FSGLL+ PF+P     IHH Q++
Sbjct: 112 --VIGSTVGIQDCTFPPSQLCYNQSLAHTAFHFAEPCFSGLLAAPFVPQS--NIHHAQLL 167

Query: 173 GMAPARVPLPLELAEDEPIYVNAKQYRAILRRRQYRAKLEAQNKLVKGRKPYLHESRHAH 232
           GM PAR+PLPL+L+E EP+YVNAKQY AILRRRQYRAKLEAQNKL+K RKPYLHESRH H
Sbjct: 168 GMTPARIPLPLDLSE-EPMYVNAKQYHAILRRRQYRAKLEAQNKLIKERKPYLHESRHLH 226

Query: 233 AMNRARGSGGRFLNTKKVPESKRNLTNNELD------------MSESEAH---RENYKDG 277
           A+ RARGSGGRFLN KK+ E K    N  LD            MSES+       NY++G
Sbjct: 227 ALKRARGSGGRFLNAKKLQELKLTSANRGLDVSGCTQLNLSGNMSESKVQAVENLNYRNG 286

Query: 278 GSTTSCSDITSASNSEDIFQQPE--FGFSGYSSIGSRSMQGCSATM 321
            STT+CSD+ S SNS+D+FQQ E  F   GY S   R+MQG SA +
Sbjct: 287 ASTTTCSDVISTSNSDDVFQQHESDFRLCGYPSHIGRNMQGYSADI 332

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225442180|ref|XP_002274458.1| PREDICTED: nuclear transcription factor Y subunit A-3 [Vitis vinifera] gi|297743031|emb|CBI35898.3| unnamed protein product [Vitis vinifera]

 Score =  248 bits (634), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 147/320 (45%), Positives = 192/320 (60%), Gaps = 22/320 (6%)

Query: 1   MPNLFSKDSGISSACSASMNGVSGPLWGSSSESVVQQSSMSGCLSLKMAVPRQQFANTKQ 60
           M +L   D  ++SA   S    S P W +SSE+  QQSS+     LK+      + +TK+
Sbjct: 1   MQHLCKNDFHVNSARPTSPCDASSPHWWTSSETNTQQSSLPKFSRLKIGTQTIDYHSTKE 60

Query: 61  LSFQFQDQESSSTQSTGQSCSKEACVKDDNPSRQSVVSAPPGFNGIHVKPVGGHSKLASS 120
           L  Q +DQ+S ST+STGQS         +N   QS+ SA  G+   H KP+        S
Sbjct: 61  LGSQVRDQDSPSTRSTGQSYPGVLHWGGNNTHGQSIFSAHLGYKETHGKPM-------VS 113

Query: 121 MGPHDFVFTPPHVDYNQSVAPFQLHYAEPYFSGLLSPFLPPQAMQIHHPQMMGMAPARVP 180
           +G  D++FTP  VD NQ  A   +   E Y   LL+P    +AM IHHPQMMGMAP+RVP
Sbjct: 114 IGNQDYLFTPSQVDCNQLTARIPITATEIYHCDLLAPAYGTKAM-IHHPQMMGMAPSRVP 172

Query: 181 LPLELAEDEPIYVNAKQYRAILRRRQYRAKLEAQNKLVKGRKPYLHESRHAHAMNRARGS 240
           LP+   ++E I++N KQY  I+RRR++RAKLEAQ   VK RKPYLHESRH HA+ R RG+
Sbjct: 173 LPVLNPQEEVIFINPKQYNGIMRRRKHRAKLEAQTNPVKARKPYLHESRHLHALKRPRGA 232

Query: 241 GGRFLNTKKVPESKRNLTNNELDM-------------SESEAHR-ENYKDGGSTTSCSDI 286
           GGRFLN  K+ E K +  + +  +             SESE H+ EN ++G STTSCSD+
Sbjct: 233 GGRFLNMSKLQEPKPSSPSTDALIAGSAQPPFNGNTASESEVHQPENNREGASTTSCSDV 292

Query: 287 TSASNSEDIFQQPEFGFSGY 306
           TS SNS+D+F QPEF FS Y
Sbjct: 293 TSGSNSDDVFLQPEFRFSTY 312

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297842025|ref|XP_002888894.1| hypothetical protein ARALYDRAFT_339498 [Arabidopsis lyrata subsp. lyrata] gi|297334735|gb|EFH65153.1| hypothetical protein ARALYDRAFT_339498 [Arabidopsis lyrata subsp. lyrata]

 Score =  239 bits (610), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 160/341 (46%), Positives = 203/341 (59%), Gaps = 30/341 (8%)

Query: 7   KDSGISSACSASMNGVSGPLWGSS-SESVVQQ--SSMSGCLSLKMAVPRQQFANTKQLSF 63
           KDS   S        +S   WG   ++S+V +  ++    LSLKM    +    TKQ+SF
Sbjct: 4   KDSATHSTLPYLNTSIS---WGVVPTDSIVNRRVTTTESSLSLKMDARPELLQTTKQISF 60

Query: 64  QFQDQESSSTQSTGQSCSKEACVKDDNPSRQSVVSAPPGFNGIHVKPVGGHSKLASSMGP 123
           Q  DQ+SSSTQSTGQS ++ A  +DDNPSRQ   SA  G      K    + K     G 
Sbjct: 61  Q--DQDSSSTQSTGQSYTEVATSEDDNPSRQISFSAKSGSEATQRKGFASNPKPGLMTGF 118

Query: 124 HDFVFTPPHVDYNQSVAPFQLHYAEPYFSGLLSPFLPPQAMQIHHPQMMGMAPARVPLPL 183
            +  F P       + A F  HYA+P++ GLL+    PQA   + PQM+ M P RVPLP 
Sbjct: 119 PNIHFAP-------AQANFSFHYADPHYGGLLAATYLPQAPTCN-PQMVSMIPGRVPLPA 170

Query: 184 ELAEDEPIYVNAKQYRAILRRRQYRAKLEAQNKLVKGRKPYLHESRHAHAMNRARGSGGR 243
           EL E EP++VNAKQY AI+RRRQ RAKLEAQNKL++ RKPYLHESRH HA+ R RGSGGR
Sbjct: 171 ELTETEPVFVNAKQYHAIMRRRQQRAKLEAQNKLIRARKPYLHESRHVHALKRPRGSGGR 230

Query: 244 FLNTKKV----PESKRNLTNNELD--------MSESEAHRENYKDGGSTTSCSDITSASN 291
           FLNTKK+     ++ R   N++ D        MS  EAH  + KD GSTTS SDITS S+
Sbjct: 231 FLNTKKLLQEAEQAAREQENDKSDQQENRKTNMSRFEAHMLHSKDLGSTTSGSDITSISD 290

Query: 292 SEDIFQQPEFGFSGYSSIGSRSM--QGCSATMNGDGNIHRF 330
             D+F   EF FSG+S+  +R+M   G S  M+G G++H F
Sbjct: 291 GADLFGHTEFQFSGFSTQTNRAMLVHGQSNDMHGGGDMHHF 331

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18410195|ref|NP_565049.1| nuclear transcription factor Y subunit A-3 [Arabidopsis thaliana] gi|81174954|sp|Q93ZH2.2|NFYA3_ARATH RecName: Full=Nuclear transcription factor Y subunit A-3; Short=AtNF-YA-3; AltName: Full=Transcriptional activator HAP2C gi|5903072|gb|AAD55630.1|AC008017_3 Transcription Factor [Arabidopsis thaliana] gi|22655158|gb|AAM98169.1| CCAAT-binding factor B subunit-like protein, putative [Arabidopsis thaliana] gi|31711816|gb|AAP68264.1| At1g72830 [Arabidopsis thaliana] gi|332197257|gb|AEE35378.1| nuclear transcription factor Y subunit A-3 [Arabidopsis thaliana]

 Score =  230 bits (587), Expect = 6e-58,   Method: Compositional matrix adjust.
 Identities = 158/344 (45%), Positives = 197/344 (57%), Gaps = 30/344 (8%)

Query: 4   LFSKDSGISSACSASMNGVSGPLWGSS-SESVVQQSSMSGCLSLKMAVPRQQFANTKQLS 62
           L  KDS   S        +S   WG   ++SV  +   +  LSLK+         TKQ+S
Sbjct: 6   LNKKDSATHSTLPYLNTSIS---WGVVPTDSVANRRGSAESLSLKVDSRPGHIQTTKQIS 62

Query: 63  FQFQDQESSSTQSTGQSCSKEACVKDDNPSRQSVVSAPPGFNGIHVKPVGGHSKLASSMG 122
           FQ  DQ+SSSTQSTGQS ++ A   DDNPSRQ   SA  G      K    + K  S  G
Sbjct: 63  FQ--DQDSSSTQSTGQSYTEVASSGDDNPSRQISFSAKSGSEITQRKGFASNPKQGSMTG 120

Query: 123 PHDFVFTPPHVDYNQSVAPFQLHYAEPYFSGLLSPFLPPQAMQIHHPQMMGMAPARVPLP 182
             +  F P       + A F  HYA+P++ GLL+    PQA   + PQM+ M P RVPLP
Sbjct: 121 FPNIHFAP-------AQANFSFHYADPHYGGLLAATYLPQAPTCN-PQMVSMIPGRVPLP 172

Query: 183 LELAEDEPIYVNAKQYRAILRRRQYRAKLEAQNKLVKGRKPYLHESRHAHAMNRARGSGG 242
            EL E +P++VNAKQY AI+RRRQ RAKLEAQNKL++ RKPYLHESRH HA+ R RGSGG
Sbjct: 173 AELTETDPVFVNAKQYHAIMRRRQQRAKLEAQNKLIRARKPYLHESRHVHALKRPRGSGG 232

Query: 243 RFLNTKKVPESKRNL-------------TNNELDMSESEAHR-ENYKDGGSTTSCSDITS 288
           RFLNTKK+ +                   N + +MS  EAH  +N KD  STTS SDITS
Sbjct: 233 RFLNTKKLLQESEQAAAREQEQDKLGQQVNRKTNMSRFEAHMLQNNKDRSSTTSGSDITS 292

Query: 289 ASNSEDIFQQPEFGFSGYSSIGSRSM--QGCSATMNGDGNIHRF 330
            S+  DIF   EF FSG+ +  +R+M   G S  M+G G++H F
Sbjct: 293 VSDGADIFGHTEFQFSGFPTPINRAMLVHGQSNDMHGGGDMHHF 336

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147772926|emb|CAN73678.1| hypothetical protein VITISV_021401 [Vitis vinifera]

 Score =  230 bits (587), Expect = 7e-58,   Method: Compositional matrix adjust.
 Identities = 139/320 (43%), Positives = 181/320 (56%), Gaps = 47/320 (14%)

Query: 1   MPNLFSKDSGISSACSASMNGVSGPLWGSSSESVVQQSSMSGCLSLKMAVPRQQFANTKQ 60
           M +L   D  ++SA   S    S P W +SSE+  QQSS+     LK+      + +TK+
Sbjct: 1   MQHLCKNDFHVNSARPTSPCDASSPHWWTSSETNTQQSSLPKFSRLKIGTQTIDYHSTKE 60

Query: 61  LSFQFQDQESSSTQSTGQSCSKEACVKDDNPSRQSVVSAPPGFNGIHVKPVGGHSKLASS 120
           L  Q +DQ+S ST+STG                         +   H KP+        S
Sbjct: 61  LGSQVRDQDSPSTRSTG-------------------------YKETHGKPM-------VS 88

Query: 121 MGPHDFVFTPPHVDYNQSVAPFQLHYAEPYFSGLLSPFLPPQAMQIHHPQMMGMAPARVP 180
           +G  D++FTP  VD NQ  A   +   E Y   LL+P    +AM IHHPQMMGMAP+RVP
Sbjct: 89  IGNQDYLFTPSQVDCNQLTARIPITATEIYHCDLLAPAYGTKAM-IHHPQMMGMAPSRVP 147

Query: 181 LPLELAEDEPIYVNAKQYRAILRRRQYRAKLEAQNKLVKGRKPYLHESRHAHAMNRARGS 240
           LP+   ++E I++N KQY  I+RRR++RAKLEAQ   VK RKPYLHESRH HA+ R RG+
Sbjct: 148 LPVLNPQEEVIFINPKQYNGIMRRRKHRAKLEAQTNPVKARKPYLHESRHLHALKRPRGA 207

Query: 241 GGRFLNTKKVPESKRNLTNNEL-------------DMSESEAHR-ENYKDGGSTTSCSDI 286
           GGRFLN  K+ E K +  + +                SESE H+ EN ++G STTSCSD+
Sbjct: 208 GGRFLNMSKLQEPKPSSPSTDALIAGSAQPPFNGNTTSESEVHQPENNREGASTTSCSDV 267

Query: 287 TSASNSEDIFQQPEFGFSGY 306
           TS SNS+D+F QPEF FS Y
Sbjct: 268 TSGSNSDDVFLQPEFRFSTY 287

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|2398525|emb|CAA74050.1| Transcription factor [Arabidopsis thaliana]

 Score =  230 bits (586), Expect = 8e-58,   Method: Compositional matrix adjust.
 Identities = 158/344 (45%), Positives = 197/344 (57%), Gaps = 30/344 (8%)

Query: 4   LFSKDSGISSACSASMNGVSGPLWGSS-SESVVQQSSMSGCLSLKMAVPRQQFANTKQLS 62
           L  KDS   S        +S   WG   ++SV  +   +  LSLK+         TKQ+S
Sbjct: 6   LNKKDSATHSTLPYLNTSIS---WGVVPTDSVANRRGPAESLSLKVDSRPGHIQTTKQIS 62

Query: 63  FQFQDQESSSTQSTGQSCSKEACVKDDNPSRQSVVSAPPGFNGIHVKPVGGHSKLASSMG 122
           FQ  DQ+SSSTQSTGQS ++ A   DDNPSRQ   SA  G      K    + K  S  G
Sbjct: 63  FQ--DQDSSSTQSTGQSYTEVASSGDDNPSRQISFSAKSGSEITQRKGFASNPKQGSMTG 120

Query: 123 PHDFVFTPPHVDYNQSVAPFQLHYAEPYFSGLLSPFLPPQAMQIHHPQMMGMAPARVPLP 182
             +  F P       + A F  HYA+P++ GLL+    PQA   + PQM+ M P RVPLP
Sbjct: 121 FPNIHFAP-------AQANFSFHYADPHYGGLLAATYLPQAPTCN-PQMVSMIPGRVPLP 172

Query: 183 LELAEDEPIYVNAKQYRAILRRRQYRAKLEAQNKLVKGRKPYLHESRHAHAMNRARGSGG 242
            EL E +P++VNAKQY AI+RRRQ RAKLEAQNKL++ RKPYLHESRH HA+ R RGSGG
Sbjct: 173 AELTETDPVFVNAKQYHAIMRRRQQRAKLEAQNKLIRARKPYLHESRHVHALKRPRGSGG 232

Query: 243 RFLNTKKVPESKRNL-------------TNNELDMSESEAHR-ENYKDGGSTTSCSDITS 288
           RFLNTKK+ +                   N + +MS  EAH  +N KD  STTS SDITS
Sbjct: 233 RFLNTKKLLQESEQAAAREQEQDKLGQQVNRKTNMSRFEAHMLQNNKDRSSTTSGSDITS 292

Query: 289 ASNSEDIFQQPEFGFSGYSSIGSRSM--QGCSATMNGDGNIHRF 330
            S+  DIF   EF FSG+ +  +R+M   G S  M+G G++H F
Sbjct: 293 VSDGADIFGHTEFQFSGFPTPINRAMLVHGQSNDMHGGGDMHHF 336

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|42572087|ref|NP_974134.1| nuclear transcription factor Y subunit A-3 [Arabidopsis thaliana] gi|332197256|gb|AEE35377.1| nuclear transcription factor Y subunit A-3 [Arabidopsis thaliana]

 Score =  226 bits (575), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 158/345 (45%), Positives = 197/345 (57%), Gaps = 31/345 (8%)

Query: 4   LFSKDSGISSACSASMNGVSGPLWGSS-SESVVQQSSMSGCLSLKMAVPRQQFANTKQLS 62
           L  KDS   S        +S   WG   ++SV  +   +  LSLK+         TKQ+S
Sbjct: 6   LNKKDSATHSTLPYLNTSIS---WGVVPTDSVANRRGSAESLSLKVDSRPGHIQTTKQIS 62

Query: 63  FQFQDQESSSTQSTGQSCSKEACVKDDNPSRQSVVSAPPGFNGIHVKPVGGHSKLASSMG 122
           FQ  DQ+SSSTQSTGQS ++ A   DDNPSRQ   SA  G      K    + K  S  G
Sbjct: 63  FQ--DQDSSSTQSTGQSYTEVASSGDDNPSRQISFSAKSGSEITQRKGFASNPKQGSMTG 120

Query: 123 PHDFVFTPPHVDYNQSVAPFQLHYAEPYFSGLLSPFLPPQAMQIHHPQMMGMAPARVPLP 182
             +  F P       + A F  HYA+P++ GLL+    PQA   + PQM+ M P RVPLP
Sbjct: 121 FPNIHFAP-------AQANFSFHYADPHYGGLLAATYLPQAPTCN-PQMVSMIPGRVPLP 172

Query: 183 LELAEDEPIYVNAKQYRAILRRRQYRAKLEAQNKLVKGRK-PYLHESRHAHAMNRARGSG 241
            EL E +P++VNAKQY AI+RRRQ RAKLEAQNKL++ RK PYLHESRH HA+ R RGSG
Sbjct: 173 AELTETDPVFVNAKQYHAIMRRRQQRAKLEAQNKLIRARKVPYLHESRHVHALKRPRGSG 232

Query: 242 GRFLNTKKVPESKRNL-------------TNNELDMSESEAHR-ENYKDGGSTTSCSDIT 287
           GRFLNTKK+ +                   N + +MS  EAH  +N KD  STTS SDIT
Sbjct: 233 GRFLNTKKLLQESEQAAAREQEQDKLGQQVNRKTNMSRFEAHMLQNNKDRSSTTSGSDIT 292

Query: 288 SASNSEDIFQQPEFGFSGYSSIGSRSM--QGCSATMNGDGNIHRF 330
           S S+  DIF   EF FSG+ +  +R+M   G S  M+G G++H F
Sbjct: 293 SVSDGADIFGHTEFQFSGFPTPINRAMLVHGQSNDMHGGGDMHHF 337

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388523195|gb|AFK49650.1| nuclear transcription factor Y subunit A8 [Medicago truncatula]

 Score =  223 bits (569), Expect = 8e-56,   Method: Compositional matrix adjust.
 Identities = 148/296 (50%), Positives = 182/296 (61%), Gaps = 31/296 (10%)

Query: 40  MSGCLSLKMAVPRQQFANTKQLSFQFQDQESSSTQS-------TGQSCSKEACVKDDNPS 92
           MS  L+L M+V +Q+   +K L FQFQDQ+SSSTQS        G   S    V+ +N S
Sbjct: 1   MSENLTLNMSVLQQECHKSKPLVFQFQDQDSSSTQSTGQSYLEVGSGQSGPISVQYNNSS 60

Query: 93  RQSVVSAPPGFNGIHVKPVGGHSKLASSMGPHDFVFTPPHVDYNQSVAPFQLHYAEPYFS 152
             S +S   G      K   G   + SS G  DF      +D+NQS+AP    + E Y +
Sbjct: 61  TCSTLSETGG------KSTEG--IILSSAGSRDFTLPSSQLDHNQSLAPVAFPHVETYSN 112

Query: 153 GLLS-PFLPPQAMQIHHPQMMGMAPARVPLPLELAEDEPIYVNAKQYRAILRRRQYRAKL 211
           GLL+ P+       ++H Q+ GM P R+PLPL L E EPIYVNAKQY AILRRRQYRAKL
Sbjct: 113 GLLAAPY--GSRNNVNHAQLAGMPPVRIPLPLNLCE-EPIYVNAKQYHAILRRRQYRAKL 169

Query: 212 EAQNKLVKGRKPYLHESRHAHAMNRARGSGGRFLNTKKVPESKRNLT-----NNELDMSE 266
           EAQNKLVK RKPYLHESRH HA+ RARGSGGRFLNT K+ +   N++     N   ++ E
Sbjct: 170 EAQNKLVKNRKPYLHESRHLHALKRARGSGGRFLNTNKLQDHGFNVSTTTRVNPSGNVPE 229

Query: 267 SEAHR-ENYKDGGSTTSCSDITSASNSEDIFQQPEFGF--SGYSSIGSRSMQGCSA 319
           S  H+ E Y+DG STT+CSD+T ASNS+D+FQQ E  F   GY S     MQ  SA
Sbjct: 230 SRVHQVEKYRDGASTTTCSDVTCASNSDDMFQQHESDFRSCGYPS----HMQDLSA 281

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297850154|ref|XP_002892958.1| CCAAT-binding transcription factor (CBF-B/NF-YA) family protein [Arabidopsis lyrata subsp. lyrata] gi|297338800|gb|EFH69217.1| CCAAT-binding transcription factor (CBF-B/NF-YA) family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  219 bits (557), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 155/340 (45%), Positives = 195/340 (57%), Gaps = 37/340 (10%)

Query: 7   KDSGISSACSASMNGVSGPLWGSSSESVVQQSSMSGCLSLKMAVPRQQFANTKQLSFQFQ 66
           KDS   S  S     +S   WG S+ES V  S+M     LK+    ++  NT   +F FQ
Sbjct: 4   KDSAAHSTPSFLNTSIS---WGLSTESNVGGSAMR----LKVDARPERLLNTN--NFSFQ 54

Query: 67  DQESSSTQSTGQSCSKEACVKDDNPSRQSVVSAP----PGFNGIHVKPVGGHSKLASSM- 121
           DQ+SSST ST QS +  A   DD+PSR    SA      GF     K    H K  SS  
Sbjct: 55  DQDSSSTLSTAQSSTHVATSGDDDPSRHISFSAHSDIFKGFEETQRKQFANHIKSGSSTA 114

Query: 122 GPHDFVFTPPHVDYNQSVAPFQLHYAEPYFSGLLSPFLPPQAMQIHHPQMMGMAPARVPL 181
           G  D  F+P       S A F  HYA+P+F G++ P    Q   I +PQM+    +RVPL
Sbjct: 115 GIADIHFSP-------SKANFSFHYADPHFGGVM-PAAYLQQATIWNPQMV----SRVPL 162

Query: 182 PLELAEDEPIYVNAKQYRAILRRRQYRAKLEAQNKLVKGRKPYLHESRHAHAMNRARGSG 241
           P  L E+EP++VNAKQ+ AI+RRRQ RAKLEAQNKL++ RKPYLHESRH HA+ R RGSG
Sbjct: 163 PFHLIENEPVFVNAKQFHAIMRRRQQRAKLEAQNKLIRARKPYLHESRHVHALKRPRGSG 222

Query: 242 GRFLNTKKVPES---KRNLTNNEL----DMSESEAHR-ENYKDGG-STTSCSDITSASNS 292
           GRFLNTKK+ ES   K+++   +     +MS   AH+ +  KD G STTS SDITSAS+ 
Sbjct: 223 GRFLNTKKLQESTDPKQDMPIQQQQAKGNMSRFVAHQLQTSKDRGCSTTSGSDITSASDG 282

Query: 293 EDIFQQPEFGFSGYSSIGSRSM--QGCSATMNGDGNIHRF 330
            D+F   EF  S + S  + +M     S  M+G GN H F
Sbjct: 283 VDLFGHTEFQISDHPSQTNPTMYVHRQSNDMHGGGNTHHF 322

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	336
TAIR|locus:2032758	341	NF-YA3 ""nuclear factor Y, sub	0.651	0.642	0.495	1.4e-48
TAIR|locus:2014375	308	NF-YA5 ""nuclear factor Y, sub	0.577	0.629	0.487	2.5e-42
TAIR|locus:2007953	328	NF-YA8 ""nuclear factor Y, sub	0.806	0.826	0.425	3.2e-42
TAIR|locus:2088232	308	NF-YA6 ""nuclear factor Y, sub	0.595	0.649	0.484	1.7e-41
TAIR|locus:2028150	190	NF-YA7 ""nuclear factor Y, sub	0.386	0.684	0.511	1.1e-30
TAIR|locus:2088791	303	NF-YA9 ""nuclear factor Y, sub	0.607	0.673	0.364	1.9e-26
TAIR|locus:2061534	198	NF-YA4 ""nuclear factor Y, sub	0.389	0.661	0.460	3.6e-25
TAIR|locus:2182245	272	NF-YA1 ""nuclear factor Y, sub	0.398	0.492	0.434	3.3e-24
ZFIN|ZDB-GENE-040718-491	399	nfyal "nuclear transcription f	0.238	0.200	0.626	6.5e-22
TAIR|locus:2144113	269	NF-YA10 ""nuclear factor Y, su	0.476	0.594	0.396	7e-22

TAIR|locus:2032758 NF-YA3 ""nuclear factor Y, subunit A3"" [Arabidopsis thaliana (taxid:3702)]

 Score = 507 (183.5 bits), Expect = 1.4e-48, P = 1.4e-48
 Identities = 120/242 (49%), Positives = 149/242 (61%)

Query:    88 DDNPSRQSVVSAPPGFNGIHVKPVGGHSKLASSMGPHDFVFTPPHVDYNQSVAPFQLHYA 147
             DDNPSRQ   SA  G      K    + K  S  G     F  P++ +  + A F  HYA
Sbjct:    86 DDNPSRQISFSAKSGSEITQRKGFASNPKQGSMTG-----F--PNIHFAPAQANFSFHYA 138

Query:   148 EPYFSGLLSPFLPPQAMQIHHPQMMGMAPARVPLPLELAEDEPIYVNAKQYRAILRRRQY 207
             +P++ GLL+    PQA   + PQM+ M P RVPLP EL E +P++VNAKQY AI+RRRQ 
Sbjct:   139 DPHYGGLLAATYLPQAPTCN-PQMVSMIPGRVPLPAELTETDPVFVNAKQYHAIMRRRQQ 197

Query:   208 RAKLEAQNKLVKGRK-PYLHESRHAHAMNRARGSGGRFLNTKKV-PESKR---------- 255
             RAKLEAQNKL++ RK PYLHESRH HA+ R RGSGGRFLNTKK+  ES++          
Sbjct:   198 RAKLEAQNKLIRARKVPYLHESRHVHALKRPRGSGGRFLNTKKLLQESEQAAAREQEQDK 257

Query:   256 --NLTNNELDMSESEAHR-ENYKDGGSTTSCSDITSASNSEDIFQQPEFGFSGYSSIGSR 312
                  N + +MS  EAH  +N KD  STTS SDITS S+  DIF   EF FSG+ +  +R
Sbjct:   258 LGQQVNRKTNMSRFEAHMLQNNKDRSSTTSGSDITSVSDGADIFGHTEFQFSGFPTPINR 317

Query:   313 SM 314
             +M
Sbjct:   318 AM 319

GO:0003677 "DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;IGI;ISS

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0016602 "CCAAT-binding factor complex" evidence=IEA;ISS

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=RCA

TAIR|locus:2014375 NF-YA5 ""nuclear factor Y, subunit A5"" [Arabidopsis thaliana (taxid:3702)]

 Score = 448 (162.8 bits), Expect = 2.5e-42, P = 2.5e-42
 Identities = 100/205 (48%), Positives = 131/205 (63%)

Query:   109 KPVGGHSK--LASSMGPHDFVFTPPHVDYNQSVAPFQLHYAEP-YFSGLLSPFLPPQAMQ 165
             KP+  ++K    SSM   D VF  P          + L  AE  +F+G L+P        
Sbjct:    99 KPIENYTKSITTSSMVSQDSVFPAP----TSGQISWSLQCAETSHFNGFLAPEYASTPTA 154

Query:   166 IHHPQMMGMAPARVPLPLELAEDEPIYVNAKQYRAILRRRQYRAKLEAQNKLVKGRKPYL 225
             + H +MMG+  +RVPLP  + E+EPI+VNAKQY AILRRR++RAKLEAQNKL+K RKPYL
Sbjct:   155 LPHLEMMGLVSSRVPLPHHIQENEPIFVNAKQYHAILRRRKHRAKLEAQNKLIKCRKPYL 214

Query:   226 HESRHAHAMNRARGSGGRFLNTKKVPESKRNLTNNELDMSESEAHRENYKDGGSTTSCSD 285
             HESRH HA+ RARGSGGRFLNTKK+ ES  +L +++  M+  +    +   GGS    S 
Sbjct:   215 HESRHLHALKRARGSGGRFLNTKKLQESSNSLCSSQ--MANGQNFSMSPHGGGSGIGSSS 272

Query:   286 ITSASNSE--DIFQQPEFGFSGYSS 308
             I+ +SNS   ++FQ P+F FSGY S
Sbjct:   273 ISPSSNSNCINMFQNPQFRFSGYPS 297

GO:0003677 "DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0016602 "CCAAT-binding factor complex" evidence=IEA;ISS

GO:0009738 "abscisic acid mediated signaling pathway" evidence=IMP

GO:0009785 "blue light signaling pathway" evidence=IMP

GO:0009414 "response to water deprivation" evidence=IMP

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=RCA;IDA

GO:0016036 "cellular response to phosphate starvation" evidence=RCA

GO:0019375 "galactolipid biosynthetic process" evidence=RCA

GO:0009790 "embryo development" evidence=IMP

GO:0010262 "somatic embryogenesis" evidence=IMP

GO:0048316 "seed development" evidence=IMP

TAIR|locus:2007953 NF-YA8 ""nuclear factor Y, subunit A8"" [Arabidopsis thaliana (taxid:3702)]

 Score = 447 (162.4 bits), Expect = 3.2e-42, P = 3.2e-42
 Identities = 129/303 (42%), Positives = 163/303 (53%)

Query:    44 LSLKMAVPR-QQFANTKXXXXXXXXXXXXXXXXXXXXXXKEACVKDDNPSRQSVVSAPP- 101
             LSLK+   R ++  NTK                        +   DDNPSRQ    A   
Sbjct:    38 LSLKVVDARPERLINTKNISFQDQDSSSTLSSAQSSNDVTSS--GDDNPSRQISFLAHSD 95

Query:   102 ---GFNGIHVKPVGGHSKLASSMGPHDFVFTPPHVDYNQSVAPFQLHYAEPYFSGLLSPF 158
                GF     K     S  +S+ G  D   +P       S A F  HYA+P+F GL+   
Sbjct:    96 VCKGFEETQRKRFAIKSG-SSTAGIADIHSSP-------SKANFSFHYADPHFGGLMPAA 147

Query:   159 LPPQAMQIHHPQMMGMAPARVPLPLELAEDEPIYVNAKQYRAILRRRQYRAKLEAQNKLV 218
               PQA  I +PQM      RVPLP +L E+EP++VNAKQ+ AI+RRRQ RAKLEAQNKL+
Sbjct:   148 YLPQAT-IWNPQM-----TRVPLPFDLIENEPVFVNAKQFHAIMRRRQQRAKLEAQNKLI 201

Query:   219 KGRKPYLHESRHAHAMNRARGSGGRFLNTKKVPES---KRNLTNNEL----DMSESEAHR 271
             K RKPYLHESRH HA+ R RGSGGRFLNTKK+ ES   K+++   +     +MS    ++
Sbjct:   202 KARKPYLHESRHVHALKRPRGSGGRFLNTKKLQESTDPKQDMPIQQQHATGNMSRFVLYQ 261

Query:   272 -ENYKDGG-STTSCSDITSASNSEDIFQQPEFGFSGYSSIGSRSM--QGCSATMNGDGNI 327
              +N  D   STTS SDITSAS+S ++F   EF  S   S  + +M   G S  M+G  N 
Sbjct:   262 LQNSNDCDCSTTSRSDITSASDSVNLFGHSEFLISDCPSQTNPTMYVHGQSNDMHGGRNT 321

Query:   328 HRF 330
             H F
Sbjct:   322 HHF 324

GO:0003677 "DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0016602 "CCAAT-binding factor complex" evidence=IEA;ISS

TAIR|locus:2088232 NF-YA6 ""nuclear factor Y, subunit A6"" [Arabidopsis thaliana (taxid:3702)]

 Score = 440 (159.9 bits), Expect = 1.7e-41, P = 1.7e-41
 Identities = 110/227 (48%), Positives = 140/227 (61%)

Query:    96 VVSAPPGFNGIHVKPVGGHSKLASSMGPHDFVFTPPHVDYNQSVAPFQLH-YAEPYFSGL 154
             VV+   G+      P+G HS   S +   D V  P  ++     A + LH    P+F+G 
Sbjct:    87 VVTHLSGYKENPENPIGSHS--ISKVS-QDSVVLP--IE----AASWPLHGNVTPHFNGF 137

Query:   155 LS-PFLPPQAMQIHHPQMMGMAPARVPLPLELAEDEPIYVNAKQYRAILRRRQYRAKLEA 213
             LS P+     +Q  HPQ+ G+ P+R+PLP  + E+EPI+VNAKQY+AILRRR+ RAKLEA
Sbjct:   138 LSFPYASQHTVQ--HPQIRGLVPSRMPLPHNIPENEPIFVNAKQYQAILRRRERRAKLEA 195

Query:   214 QNKLVKGRKPYLHESRHAHAMNRARGSGGRFLNTKKVPESKRNLTNNEL------DMSES 267
             QNKL+K RKPYLHESRH HA+ R RGSGGRFLNTKK  ES  +L+   L        S  
Sbjct:   196 QNKLIKVRKPYLHESRHLHALKRVRGSGGRFLNTKKHQESNSSLSPPFLIPPHVFKNSPG 255

Query:   268 EAHRENYKDGG-----STTSCSDITSASNSEDIFQQ-PEFGFSGYSS 308
             +  + +   GG     STTSCSDIT   N+ D+FQQ P+F FSGY S
Sbjct:   256 KFRQMDISRGGVVSSVSTTSCSDITG--NNNDMFQQNPQFRFSGYPS 300

GO:0003677 "DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0016602 "CCAAT-binding factor complex" evidence=IEA;ISS

GO:0009790 "embryo development" evidence=IMP

GO:0010262 "somatic embryogenesis" evidence=IMP

GO:0048316 "seed development" evidence=IMP

TAIR|locus:2028150 NF-YA7 ""nuclear factor Y, subunit A7"" [Arabidopsis thaliana (taxid:3702)]

 Score = 338 (124.0 bits), Expect = 1.1e-30, P = 1.1e-30
 Identities = 69/135 (51%), Positives = 89/135 (65%)

Query:   127 VFTPPHVDYNQSVAPFQLHYAEPYFSGLLSPFLPPQAMQIHHPQMMGMAPARVPLPLELA 186
             V++ P      S+AP Q  Y +PY+  + +P  PPQ     H Q+MG+    VPLP +  
Sbjct:    43 VYSDPGT--TNSMAPGQYPYPDPYYRSIFAP--PPQPYTGVHLQLMGVQQQGVPLPSDAV 98

Query:   187 EDEPIYVNAKQYRAILRRRQYRAKLEAQNKLVKGRKPYLHESRHAHAMNRARGSGGRFLN 246
             E EP++VNAKQY  ILRRRQ RA+LE+QNK++K RKPYLHESRH HA+ R RG GGRFLN
Sbjct:    99 E-EPVFVNAKQYHGILRRRQSRARLESQNKVIKSRKPYLHESRHLHAIRRPRGCGGRFLN 157

Query:   247 TKKVPESKRNLTNNE 261
              KK  E   + ++ E
Sbjct:   158 AKKEDEHHEDSSHEE 172

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0016602 "CCAAT-binding factor complex" evidence=ISS

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=RCA;IDA

GO:0016036 "cellular response to phosphate starvation" evidence=RCA

GO:0019375 "galactolipid biosynthetic process" evidence=RCA

TAIR|locus:2088791 NF-YA9 ""nuclear factor Y, subunit A9"" [Arabidopsis thaliana (taxid:3702)]

 Score = 298 (110.0 bits), Expect = 1.9e-26, P = 1.9e-26
 Identities = 87/239 (36%), Positives = 123/239 (51%)

Query:    87 KDDNPSRQSVVSAPPGFNGIHVKPVGGHSKLASSMGPHDFVFTPPHVDY-NQSVAPFQLH 145
             +D+  +++S V+  P       +  G +S        H     PPH      +V     +
Sbjct:    73 RDNTVNKESQVTTSP-------QSAGDYSDKNQESLHHGITQPPPHPQLVGHTVGWASSN 125

Query:   146 -YAEPYFSGLLSPFLPPQAMQIHHPQMM----GMAPARVPLPLELAEDEPIYVNAKQYRA 200
              Y +PY++G++  +        HHP       GM  +R+PLP E+A+ EP++VNAKQY+A
Sbjct:   126 PYQDPYYAGVMGAYG-------HHPLGFVPYGGMPHSRMPLPPEMAQ-EPVFVNAKQYQA 177

Query:   201 ILRRRQYRAKLEAQNKLVKGRKPYLHESRHAHAMNRARGSGGRFLNTKKVPESKRNLTNN 260
             ILRRRQ RAK E + KL+K RKPYLHESRH HAM R RG+GGRF   KK        TN 
Sbjct:   178 ILRRRQARAKAELEKKLIKSRKPYLHESRHQHAMRRPRGTGGRF--AKK--------TNT 227

Query:   261 ELDMSESEAHRENYKDGGSTTSCSDITSASNSEDIFQQPEFGFSGYSSIGSRSMQG-CS 318
             E    ++E     +     ++S SD   A N +  ++ P+ G    SS   R  +G CS
Sbjct:   228 EASKRKAEEKSNGHVTQSPSSSNSDQGEAWNGD--YRTPQ-GDEMQSSAYKRREEGECS 283

GO:0003677 "DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0016602 "CCAAT-binding factor complex" evidence=IEA;ISS

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IDA

GO:0009555 "pollen development" evidence=IMP

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

GO:0009790 "embryo development" evidence=IMP

GO:0010262 "somatic embryogenesis" evidence=IMP

GO:0048316 "seed development" evidence=IMP

GO:0055046 "microgametogenesis" evidence=IMP

TAIR|locus:2061534 NF-YA4 ""nuclear factor Y, subunit A4"" [Arabidopsis thaliana (taxid:3702)]

 Score = 286 (105.7 bits), Expect = 3.6e-25, P = 3.6e-25
 Identities = 64/139 (46%), Positives = 86/139 (61%)

Query:   135 YNQSVAPFQLHYAEPYFSGLLSP--FLP-PQ-AMQIHHPQMMGMAPARVPLPLELAEDEP 190
             Y++ +A     Y +PY+  + +   +LP P   +Q+   Q+MGM    VPL  +  E EP
Sbjct:    44 YSEPMAHGLYPYPDPYYRSVFAQQAYLPHPYPGVQL---QLMGMQQPGVPLQCDAVE-EP 99

Query:   191 IYVNAKQYRAILRRRQYRAKLEAQNKLVKGRKPYLHESRHAHAMNRARGSGGRFLNTKKV 250
             ++VNAKQY  ILRRRQ RAKLEA+N+ +K +KPY+HESRH HA+ R RG GGRFLN KK 
Sbjct:   100 VFVNAKQYHGILRRRQSRAKLEARNRAIKAKKPYMHESRHLHAIRRPRGCGGRFLNAKKE 159

Query:   251 PESKRNLTNNELDMSESEA 269
                 +       D + SEA
Sbjct:   160 NGDHKEEEEATSDENTSEA 178

GO:0003677 "DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0016602 "CCAAT-binding factor complex" evidence=IEA;ISS

GO:0048510 "regulation of timing of transition from vegetative to reproductive phase" evidence=IMP

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IDA

GO:0009411 "response to UV" evidence=RCA

GO:0009651 "response to salt stress" evidence=RCA

GO:0009723 "response to ethylene stimulus" evidence=RCA

GO:0009733 "response to auxin stimulus" evidence=RCA

GO:0009737 "response to abscisic acid stimulus" evidence=RCA

GO:0009739 "response to gibberellin stimulus" evidence=RCA

GO:0009751 "response to salicylic acid stimulus" evidence=RCA

GO:0009753 "response to jasmonic acid stimulus" evidence=RCA

GO:0009813 "flavonoid biosynthetic process" evidence=RCA

GO:0010264 "myo-inositol hexakisphosphate biosynthetic process" evidence=RCA

GO:0046686 "response to cadmium ion" evidence=RCA

TAIR|locus:2182245 NF-YA1 ""nuclear factor Y, subunit A1"" [Arabidopsis thaliana (taxid:3702)]

 Score = 277 (102.6 bits), Expect = 3.3e-24, P = 3.3e-24
 Identities = 60/138 (43%), Positives = 78/138 (56%)

Query:   113 GHSKLASSMGPHDFVFTPPHVDYNQSVAPFQLHYAEPYFSGLLSPFLPPQAMQIHHPQMM 172
             G+    S    HD     P       +A     Y +PY+ GL+  +      Q+     +
Sbjct:   100 GNDPALSIRNMHDQPLVQPPELVGHYIACVPNPYQDPYYGGLMGAY---GHQQLGFRPYL 156

Query:   173 GMAPARVPLPLELAEDEPIYVNAKQYRAILRRRQYRAKLEAQNKLVKGRKPYLHESRHAH 232
             GM   R  LPL++A+ EP+YVNAKQY  ILRRR+ RAK E + K+++ RKPYLHESRH H
Sbjct:   157 GMPRERTALPLDMAQ-EPVYVNAKQYEGILRRRKARAKAELERKVIRDRKPYLHESRHKH 215

Query:   233 AMNRARGSGGRFLNTKKV 250
             AM RAR SGGRF    +V
Sbjct:   216 AMRRARASGGRFAKKSEV 233

GO:0003677 "DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;IGI;ISS

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0009793 "embryo development ending in seed dormancy" evidence=NAS

GO:0016602 "CCAAT-binding factor complex" evidence=IEA;ISS

GO:0048510 "regulation of timing of transition from vegetative to reproductive phase" evidence=IMP

GO:0009790 "embryo development" evidence=IMP

GO:0010262 "somatic embryogenesis" evidence=IMP

GO:0048316 "seed development" evidence=IMP

GO:0055046 "microgametogenesis" evidence=IMP

ZFIN|ZDB-GENE-040718-491 nfyal "nuclear transcription factor Y, alpha, like" [Danio rerio (taxid:7955)]

 Score = 257 (95.5 bits), Expect = 6.5e-22, P = 6.5e-22
 Identities = 52/83 (62%), Positives = 61/83 (73%)

Query:   173 GMAPA--RVPLP-LELAEDEPIYVNAKQYRAILRRRQYRAKLEAQNKLVKGRKPYLHESR 229
             G  PA  R+PLP  E+ E+EP+YVNAKQY  IL+RRQ RAKLEA+ K+ K RK YLHESR
Sbjct:   279 GAVPAIQRIPLPGAEMLEEEPLYVNAKQYHRILKRRQARAKLEAEGKIPKERKKYLHESR 338

Query:   230 HAHAMNRARGSGGRFLNTKKVPE 252
             H HAM R RG GGRF + K+  E
Sbjct:   339 HKHAMQRKRGDGGRFFSPKEKEE 361

GO:0003677 "DNA binding" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA

GO:0016602 "CCAAT-binding factor complex" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

TAIR|locus:2144113 NF-YA10 ""nuclear factor Y, subunit A10"" [Arabidopsis thaliana (taxid:3702)]

 Score = 255 (94.8 bits), Expect = 7.0e-22, P = 7.0e-22
 Identities = 67/169 (39%), Positives = 88/169 (52%)

Query:   131 PHVDYNQSVAPFQLHYAEPYFSGLLSPFLPPQAMQIH-HPQMMGMAPARVPLPLELAEDE 189
             PHV +    A F+  +A+P       P +      +  +          +PL +E  ED 
Sbjct:    76 PHVAFAMQSACFEFGFAQPMMY-TKHPHVEQYYGVVSAYGSQRSSGRVMIPLKMETEEDG 134

Query:   190 PIYVNAKQYRAILRRRQYRAKLEAQNKLVKGRKPYLHESRHAHAMNRARGSGGRFLNTKK 249
              IYVN+KQY  I+RRRQ RAK E   KL + RKPY+H SRH HAM R RGSGGRFLNTK 
Sbjct:   135 TIYVNSKQYHGIIRRRQSRAKAE---KLSRCRKPYMHHSRHLHAMRRPRGSGGRFLNTKT 191

Query:   250 VPESKRNLTNNELDMSESEAHRENYKDGGSTTSC-SDIT-SASNSEDIF 296
                +K++  +N    S    H EN     S  +  S+++ SA  S D F
Sbjct:   192 ADAAKQSKPSNS--QSSEVFHPENETINSSREANESNLSDSAVTSMDYF 238

GO:0003677 "DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0016602 "CCAAT-binding factor complex" evidence=IEA;ISS

GO:0009718 "anthocyanin-containing compound biosynthetic process" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q93ZH2	NFYA3_ARATH	No assigned EC number	0.4593	0.9345	0.9235	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: fgenesh1_pg.C_scaffold_2001597 annotation not avaliable (335 aa) (Arabidopsis lyrata)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	336
pfam02045	57	pfam02045, CBFB_NFYA, CCAAT-binding transcription	5e-36
smart00521	62	smart00521, CBF, CCAAT-Binding transcription Facto	8e-35
COG5224	248	COG5224, HAP2, CCAAT-binding factor, subunit B [Tr	3e-09

>gnl|CDD|190198 pfam02045, CBFB_NFYA, CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B

 Score =  123 bits (312), Expect = 5e-36
 Identities = 48/57 (84%), Positives = 50/57 (87%)

Query: 188 DEPIYVNAKQYRAILRRRQYRAKLEAQNKLVKGRKPYLHESRHAHAMNRARGSGGRF 244
           DEPIYVNAKQY  ILRRRQ RAKLEA+NKL+K RKPYLHESRH HAM R RGSGGRF
Sbjct: 1   DEPIYVNAKQYHRILRRRQARAKLEAENKLIKSRKPYLHESRHKHAMRRPRGSGGRF 57

Length = 57

>gnl|CDD|128795 smart00521, CBF, CCAAT-Binding transcription Factor

 Score =  120 bits (304), Expect = 8e-35
 Identities = 51/62 (82%), Positives = 53/62 (85%)

Query: 186 AEDEPIYVNAKQYRAILRRRQYRAKLEAQNKLVKGRKPYLHESRHAHAMNRARGSGGRFL 245
           AE+EP+YVNAKQY  ILRRRQ RAKLEAQ KL K RKPYLHESRH HAM R RGSGGRFL
Sbjct: 1   AEEEPVYVNAKQYHRILRRRQARAKLEAQGKLPKERKPYLHESRHLHAMRRPRGSGGRFL 60

Query: 246 NT 247
           NT
Sbjct: 61  NT 62

Length = 62

>gnl|CDD|227549 COG5224, HAP2, CCAAT-binding factor, subunit B [Transcription]

 Score = 56.4 bits (135), Expect = 3e-09
 Identities = 29/67 (43%), Positives = 36/67 (53%), Gaps = 2/67 (2%)

Query: 189 EPIYVNAKQYRAILRRRQYRAKLEAQNKLVKGRKPYLHESRHAHAMNRARGSGGRFLNTK 248
           +P YVNAKQ   I +R   R  L+  + +  GR  YLHESRH HAM R R   GRFL   
Sbjct: 159 QPDYVNAKQGNEISKRPGLRVYLD--DSVSAGRAFYLHESRHKHAMLRVRDPTGRFLTAS 216

Query: 249 KVPESKR 255
           ++     
Sbjct: 217 EIDPLNL 223

Length = 248

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	336
KOG1561	307	consensus CCAAT-binding factor, subunit B (HAP2) [	100.0
smart00521	62	CBF CCAAT-Binding transcription Factor.	100.0
PF02045	58	CBFB_NFYA: CCAAT-binding transcription factor (CBF	100.0
COG5224	248	HAP2 CCAAT-binding factor, subunit B [Transcriptio	99.83

>KOG1561 consensus CCAAT-binding factor, subunit B (HAP2) [Transcription]

Probab=100.00  E-value=4.1e-50  Score=380.23  Aligned_cols=257  Identities=29%  Similarity=0.338  Sum_probs=186.1

Q ss_pred             cccceeeccccccccccccccccccCCCCcccc-CCCCc---ccccccccCC-------CCCCccccCCCCCCcccccCC
Q 019782           43 CLSLKMAVPRQQFANTKQLSFQFQDQESSSTQS-TGQSC---SKEACVKDDN-------PSRQSVVSAPPGFNGIHVKPV  111 (336)
Q Consensus        43 ~lslk~~~~~~~~~~~K~~~~q~qdqdSsStqS-tgqS~---~ev~~~~~~~-------~~~q~~~s~~~~~~g~~~k~~  111 (336)
                      .+..+.....+....++..+.+++++||+.++| ++++.   .|++.-++.+       ..-|..++..+.+.  ++++.
T Consensus        22 q~~~~~~~~~~~~p~~~~s~~~~q~~~s~~~~s~~g~~~~~~~e~~~~~~~~~~~~~~~~~~~v~~s~~s~~~--~v~~~   99 (307)
T KOG1561|consen   22 QKPEERGVQTTKKPYLHESGHKHQMGPGGRFLSADGVSKLRAQEAANGGSTGDDVNATNNDAQVAATVSSEVT--HVEGY   99 (307)
T ss_pred             ccccccccccccccccCcccccccccccccccCccccccccccccccccccccccccccccceeeeccCCcce--ecccc
Confidence            445555666677778999999999999999999 67777   5766665554       34455555555433  24555


Q ss_pred             CCccccc-cccCCCCcc-cCCCC-CCCCCccccc-cCCCCCcccCcccCC--CCCCchhhccCCcccCCCC-CccCCCcC
Q 019782          112 GGHSKLA-SSMGPHDFV-FTPPH-VDYNQSVAPF-QLHYAEPYFSGLLSP--FLPPQAMQIHHPQMMGMAP-ARVPLPLE  184 (336)
Q Consensus       112 ~~~~k~~-~~~~~~d~~-~~~~q-~~~gqs~a~~-~ypy~dpyygg~~aa--~Yg~q~~~~~~pq~~g~~~-~r~plP~~  184 (336)
                      .+..++. .++++.-.. .+... .-..+..+++ .+||.+|||+|++..  +|++++...+++|+.||.+ .|+|||.+
T Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~s~~~~~~p~~~g~~~~~~~y~~~~~~~~~~q~~g~~~~~r~pLP~~  179 (307)
T KOG1561|consen  100 ADSNDSRPSSISNSSESPAPINSATASMSPANNTSGNPITSPHYRGVLDMSGAYSGQPTNTASTQYSGPVPHDRTPLPQT  179 (307)
T ss_pred             ccccccccccccccccccCcccccccccccccccccCCCCCCcccceecccccccCCCCccccccccCCCCcCcccCCcc
Confidence            5555442 223222211 11111 1134444555 478899999999995  5999988778999999999 99999999


Q ss_pred             CCCCCceeechHhhHHHHHHHHHHHHHHHhcccccCCCCccccccchhhhhccCCCCCccccCCCcccccccccCCCCC-
Q 019782          185 LAEDEPIYVNAKQYRAILRRRQYRAKLEAQNKLVKGRKPYLHESRHAHAMNRARGSGGRFLNTKKVPESKRNLTNNELD-  263 (336)
Q Consensus       185 ~~eeePvyVNaKQy~rIlrRR~~Rakle~~~kl~k~rk~YlHESRH~HAm~R~Rg~gGRFl~~~e~~~~~~~~~~~~~~-  263 (336)
                      +.|+|||||||||||||||||++|||||+++||+|.||||||||||+|||||+||+|||||++||.++........+.. 
T Consensus       180 ~~e~ePl~VNaKQY~~IlrRRq~RaKlEa~~klik~RkpYLHESRH~HAmkR~RG~GGRFln~k~~~~~ss~~~~~~~~~  259 (307)
T KOG1561|consen  180 DSETEPLYVNAKQYHRILRRRQARAKLEATTKLIKARKPYLHESRHLHAMKRARGEGGRFLNTKEYHDDSSFIPHNPMDS  259 (307)
T ss_pred             ccCCCceeEcHHHHHHHHHHHHHHhhhhhcccchhhcCccccchhhHHHhhcccCCCCCCCchhhhhhhcccCCCCCCCc
Confidence            9999999999999999999999999999999999999999999999999999999999999999966544222222111 


Q ss_pred             --------cchhhhcccCCCCCCccccCCccccccCCcccccC-CCc
Q 019782          264 --------MSESEAHRENYKDGGSTTSCSDITSASNSEDIFQQ-PEF  301 (336)
Q Consensus       264 --------~s~~~~~~~~~~~~~s~~s~Sdvts~sn~~~~f~q-~~f  301 (336)
                              ++..++.........++++++|++.+.+..++|.+ .+|
T Consensus       260 ~~s~~~~~ps~~~~~~~~~~~~~s~~~~~s~~~~~~~~~~~g~~~~~  306 (307)
T KOG1561|consen  260 IDSSDVNDPTATGLPVDIDPLNLTGNTQDSMIIGQQTYPSHGSSGTM  306 (307)
T ss_pred             cCcccccCCcccccccCCCCCCCCCCcccceeeccccccccccccCC
Confidence                    22222222223345666788888888888888875 554

>smart00521 CBF CCAAT-Binding transcription Factor

Probab=100.00  E-value=2.6e-37  Score=236.00  Aligned_cols=61  Identities=82%  Similarity=1.205  Sum_probs=59.6

Q ss_pred             CCCceeechHhhHHHHHHHHHHHHHHHhcccccCCCCccccccchhhhhccCCCCCccccC
Q 019782          187 EDEPIYVNAKQYRAILRRRQYRAKLEAQNKLVKGRKPYLHESRHAHAMNRARGSGGRFLNT  247 (336)
Q Consensus       187 eeePvyVNaKQy~rIlrRR~~Rakle~~~kl~k~rk~YlHESRH~HAm~R~Rg~gGRFl~~  247 (336)
                      +|+|||||||||++|||||++|||+|+++||++.||||||||||+|||+|+||+||||||+
T Consensus         2 ~~~piyVNaKQy~~IlrRR~~Rak~e~~~kl~~~rkpYlhESRH~HAm~R~Rg~gGRFl~~   62 (62)
T smart00521        2 EEEPVYVNAKQYHRILRRRQARAKLEAQGKLPKERKPYLHESRHLHAMRRPRGSGGRFLNT   62 (62)
T ss_pred             CCcceeEcHHHHHHHHHHHHHHHHHHHhcchhhccCCcccchhHHHHHccCcCCCCCCCCC
Confidence            6799999999999999999999999999999999999999999999999999999999985

>PF02045 CBFB_NFYA: CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B; InterPro: IPR001289 The CCAAT-binding factor (CBFB/NF-YA) is a mammalian transcription factor that binds to a CCAAT motif in the promoters of a wide variety of genes, including type I collagen and albumin []

Probab=100.00  E-value=4.9e-35  Score=221.26  Aligned_cols=57  Identities=79%  Similarity=1.200  Sum_probs=56.2

Q ss_pred             CCceeechHhhHHHHHHHHHHHHHHHhccc-ccCCCCccccccchhhhhccCCCCCcc
Q 019782          188 DEPIYVNAKQYRAILRRRQYRAKLEAQNKL-VKGRKPYLHESRHAHAMNRARGSGGRF  244 (336)
Q Consensus       188 eePvyVNaKQy~rIlrRR~~Rakle~~~kl-~k~rk~YlHESRH~HAm~R~Rg~gGRF  244 (336)
                      |+|||||||||++|||||++|||||+++|| ++.||||||||||+|||+|+||+||||
T Consensus         1 ~~piyVNaKQY~rIlrRR~~Rakle~~~k~~~~~rk~YlheSRH~HA~~R~Rg~gGRF   58 (58)
T PF02045_consen    1 EEPIYVNAKQYHRILRRRQARAKLEAEGKLSPKKRKPYLHESRHKHAMRRPRGPGGRF   58 (58)
T ss_pred             CCCeeECHHHHHHHHHHHHHHHHHHHhCCcchhhhHHHHHHHHHHHHHcCccCCCCCC
Confidence            599999999999999999999999999999 999999999999999999999999999

The factor is a heteromeric complex of A and B subunits, both of which are required for DNA-binding []. The subunits can interact in the absence of DNA-binding, conserved regions in each being important in mediating this interaction. The B subunit contains a region of similarity with the yeast protein HAP2 []. For the B subunit it has been suggested that the N-terminal portion of the conserved region is involved in subunit interaction and the C-terminal region involved in DNA-binding [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>COG5224 HAP2 CCAAT-binding factor, subunit B [Transcription]

Probab=99.83  E-value=1.7e-21  Score=179.48  Aligned_cols=68  Identities=43%  Similarity=0.572  Sum_probs=62.4

Q ss_pred             CCceeechHhhHHHHHHHHHHHHHHHhcccccCCCCccccccchhhhhccCCCCCccccCCCcccccccc
Q 019782          188 DEPIYVNAKQYRAILRRRQYRAKLEAQNKLVKGRKPYLHESRHAHAMNRARGSGGRFLNTKKVPESKRNL  257 (336)
Q Consensus       188 eePvyVNaKQy~rIlrRR~~Rakle~~~kl~k~rk~YlHESRH~HAm~R~Rg~gGRFl~~~e~~~~~~~~  257 (336)
                      .+|.|||||||++|+|||-+|++|+..  +.-.|..|||||||+|||+|+|+++||||+++|+++++.+.
T Consensus       158 fqp~Yvnakq~n~i~kr~~~r~~ld~~--~~~~r~~ylHesrhkham~r~r~ptgrfLtasEi~~ln~tG  225 (248)
T COG5224         158 FQPDYVNAKQGNEISKRPGLRVYLDDS--VSAGRAFYLHESRHKHAMLRVRDPTGRFLTASEIDPLNLTG  225 (248)
T ss_pred             cCcchhhhhhhhHHhcchhHHHHHHHH--hhhhhhhccccchhhhhhhcccCCCcceecHHhhhhhhhcC
Confidence            589999999999999999999999985  55667779999999999999999999999999999999653

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	336
4awl_A	78	The Nf-y Transcription Factor Is Structurally And F		3e-17
4g91_A	64	Ccaat-Binding Complex From Aspergillus Nidulans Len		4e-15

>pdb|4AWL|A Chain A, The Nf-y Transcription Factor Is Structurally And Functionally A Sequence Specific Histone Length = 78

Iteration: 1
 Score = 85.9 bits (211), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 41/61 (67%), Positives = 48/61 (78%)
Query: 188 DEPIYVNAKQYRAILRRRQYRAKLEAQNKLVKGRKPYLHESRHAHAMNRARGSGGRFLNT 247
           +EP+YVNAKQY  IL+RRQ RAKLEA+ K+ K R+ YLHESRH HAM R RG GGRF + 
Sbjct: 2   EEPLYVNAKQYHRILKRRQARAKLEAEGKIPKERRKYLHESRHRHAMARKRGEGGRFFSP 61
Query: 248 K 248
           K
Sbjct: 62  K 62

>pdb|4G91|A Chain A, Ccaat-Binding Complex From Aspergillus Nidulans Length = 64

Iteration: 1
 Score = 79.0 bits (193), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 40/60 (66%), Positives = 45/60 (75%), Gaps = 1/60 (1%)
Query: 188 DEPIYVNAKQYRAILRRRQYRAKLEAQNKLV-KGRKPYLHESRHAHAMNRARGSGGRFLN 246
           + P+YVNAKQ+  IL+RR  R KLE Q +L  KGRKPYLHESRH HAM R RG GGRFL 
Sbjct: 2   ESPLYVNAKQFHRILKRRVARQKLEEQLRLTSKGRKPYLHESRHNHAMRRPRGPGGRFLT 61

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	336
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-06

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 46.8 bits (110), Expect = 7e-06
 Identities = 34/246 (13%), Positives = 61/246 (24%), Gaps = 106/246 (43%)

Query: 125 DFV--FTPPHVDYNQSVAPFQLHYAEPYFSGLL--SPF-LPPQAMQIHHPQMMGMAPARV 179
           DF+   T  H+  +           +      L   P  LP + +   +P+ + +    +
Sbjct: 279 DFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTT-NPRRLSIIAESI 337

Query: 180 PLPLELAEDEPI------YVNAKQYRAILR-----------RRQYR--------AKLEAQ 214
                   D         +VN  +   I+            R+ +         A +   
Sbjct: 338 -------RDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTI 390

Query: 215 ------------------NKLV------KGRKP---YLHESRHAHAMNRARGSGGRFLNT 247
                             NKL       K  K     +                  +L  
Sbjct: 391 LLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIP---------------SIYLEL 435

Query: 248 KKVPESKRNLTNNELDMSESEAHR---ENYKDGGSTTSCSDITSASNSEDIFQQPEFGFS 304
           K   E++  L            HR   ++Y           I    +S+D+       + 
Sbjct: 436 KVKLENEYAL------------HRSIVDHYN----------IPKTFDSDDLIPPYLDQYF 473

Query: 305 GYSSIG 310
            YS IG
Sbjct: 474 -YSHIG 478

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	336
4g92_A	64	HAPB protein; transcription factor, nucleosome, mi	100.0

>4g92_A HAPB protein; transcription factor, nucleosome, minor groove binding, CCAA complex, histone fold motif, specific binding to the ccaat- nucleus; HET: DNA; 1.80A {Emericella nidulans} PDB: 4g91_A*

Probab=100.00  E-value=1.3e-37  Score=237.93  Aligned_cols=62  Identities=65%  Similarity=1.077  Sum_probs=58.8

Q ss_pred             CCceeechHhhHHHHHHHHHHHHHHHhcccc-cCCCCccccccchhhhhccCCCCCccccCCC
Q 019782          188 DEPIYVNAKQYRAILRRRQYRAKLEAQNKLV-KGRKPYLHESRHAHAMNRARGSGGRFLNTKK  249 (336)
Q Consensus       188 eePvyVNaKQy~rIlrRR~~Rakle~~~kl~-k~rk~YlHESRH~HAm~R~Rg~gGRFl~~~e  249 (336)
                      |||||||||||++|||||++|||||++++|+ +.||||||||||+|||+|+||+||||||++|
T Consensus         2 eePiyVNaKQy~~IlrRR~~Rakle~~~kl~~~~rk~YlhESRH~HAm~R~Rg~gGRFl~~~e   64 (64)
T 4g92_A            2 ESPLYVNAKQFHRILKRRVARQKLEEQLRLTSKGRKPYLHESRHNHAMRRPRGPGGRFLTADE   64 (64)
T ss_dssp             -CCSCCCTTTHHHHHHHHHHHHHHHHHTTCCSSSCCSCSCHHHHHHHHHSCBCTTSCBCCCC-
T ss_pred             CCCeeECHHHHHHHHHHHHHHHHHHHhCCcccccccCcchhHHHHHHhcCCcCCCCccccCCC
Confidence            5999999999999999999999999999995 8899999999999999999999999999986

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00