Citrus Sinensis ID: 019800

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-----
Protein Sequence
MDDGGHRENGRHKADQYKAAQGQWLMHHQPSMKQIMTIMAERDAALQERNLATSEKKAAIAERDMAFLQRDTAIAERNNAILERDNAIASLQYRENSLGGNMSSCPPGCQISRGVKHMHHPQQHVHQLHHVSEAAYSREMHTGDALPVSPGASEAAKPRRYKRAKEPKVLSPNKKTAKSPRKVKRENEDLNKVVFGKPSEWKSVQDLDGGDDDVNKQSTASKSDWKGQVLGLNQVTFDESTMPPPACSCTGVLRQCYKWGNGGWQSACCTTSLSMYPLPAVPNKRHARVGGRKMSGSAFNKLLTRLAAEGHDLSHPVDLKDHWAKHGTNRYITIK
Secondary Structure (PSIPRED)
ccccccccccccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHcccccccccccHHHHHHcccccEEEEc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccccccHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHccccccccccccccccccccccccccccEEccccccccccccccccccccccccccccccccccccccccccccEEEEEEEEccccccccEEcccccccccEEcccccccccccccEEEcccccccccccccEEccccccHHHHHHHHHHHHHccccccccccHHHHHHHccccEEEEEc
Coil and Loop (DISEMBL)
mddgghrengrhkADQYKAAQgqwlmhhqpSMKQIMTIMAERDAALQERNLATSEKKAAIAERDMAFLQRDTAIAERNNAILERDNAIASLQYREnslggnmsscppgcqisrgvkhmhhpqqhvhqLHHVseaaysremhtgdalpvspgaseaakprrykrakepkvlspnkktaksprkvkrenedlnkvvfgkpsewksvqdldggdddvnkqstasksdwkgqvlglnqvtfdestmpppacsctgvlrqcykwgnggwqsaccttslsmyplpavpnkrharvggrkmsGSAFNKLLTRLAAeghdlshpvdlkdhwakhgtnryitik
Flexible Loop (DISEMBL)
mddgghrengrhkadQYKAAQGQWLMHHQPSMKQIMTIMAERDAALQERNLATSEKKAAIAERDMAFLQRDTAIAERNNAILERDNAIASLQYRENSLGGNMSSCPPGCQISRGVKHMHHPQQHVHQLHHVSEAAYSREMHTGDALpvspgaseaakprrykrakepkvlspnkktaksprkvkrenedlnkvvfgkpsewksvqdldggddDVNKQstasksdwkgqVLGLNQVTFDESTMPPPACSCTGVLRQCYKWGNGGWQSACCTTSLSMYPLPAVPNKRHARVGGRKMSGSAFNKLLTRLAAEGHDlshpvdlkdhwakhgtnryitik
Low Complexity Region (SEG)
MDDGGHRENGRHKADQYKAAQGQWLMHHQPSMKQIMTIMAERDAALQERNLATSEKKAAIAERDMAFLQRDTAIAERNNAILERDNAIASLQYRENSLGGNMSSCPPGCQISRGvkhmhhpqqhvhqlhhvSEAAYSREMHTGDALPVSPGASEAAKPRRYKRAKEPKVLSPNKKTAKSPRKVKRENEDLNKVVFGKPSEWKSVQDLDGGDDDVNKQSTASKSDWKGQVLGLNQVTFDESTMPPPACSCTGVLRQCYKWGNGGWQSACCTTSLSMYPLPAVPNKRHARVGGRKMSGSAFNKLLTRLAAEGHDLSHPVDLKDHWAKHGTNRYITIK
Disordered region (IsUnstruct)
*****************************************************************AFLQRDTAIAERNNAILERDNAIASL***************************************************************************************************************************************GQVLGLNQVTFDESTMPPPACSCTGVLRQCYKWGNGGWQSACCTTSLSMYPLPAVP***************AFNKLLTRLAAEGHDLSHPVDLKDHWAKHGTNRYI***
Disordered Region (DISOPRED)
********************************************ALQE****************MAFLQRDTA************************************************************************************************************************************************************LGLNQVTFDESTMPPPACSCTGVLRQCYKWGNGGWQSACCTTSLSMYPLPA***************GSAFNKLLTRLAAEGHDLSHPVDLKDHWAKHGTNRYITIK
Disordered Region (DISEMBL)
********************QGQWLMHHQPSMKQIMTIMAERDAALQERNLATSEKKAAIAERDMAFLQRDTAIAERNNAILERDNAIASLQYRENSLGGNMSSCPPGCQISRGVKHMHHPQQHVHQLHHVSEAAYSREMHTGDALPV*************************************ENEDLNKVVFGKPSEWKSVQDLDGGDDDVNKQSTASKSDWKGQVLGLNQVTFDESTMPPPACSCTGVLRQCYKWGNGGWQSACCTTSLSMYPLPAVPNKRHARVGGRKMSGSAFNKLLTRLAAEGHDLSHPVDLKDHWAKHGTNRYITIK
Disordered Region (DISPRO)
************KADQYKAAQGQWLMHHQPSMKQIMTIMAERDAALQERNLATSEKKAAIAERDMAFLQRDTAIAERNNAILERDNAIASLQYRENSLGGNMSSCPPGCQISRGVKHMHHPQQHVHQLHHVSEAAYSREMHTGDALPVSPG*************************************************************************WKGQVLGLNQVTFDESTMPPPACSCTGVLRQCYKWGNGGWQSACCTTSLSMYPLPAVPNKRHARVGGRKMSGSAFNKLLTRLAAEGHDLSHPVDLKDHWAKHGTNRYITIK
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDDGGHRENGRHKADQYKAAQGQWLMHHQPSMKQIMTIMAERDxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxNAIASLQYRENSLGGNMSSCPPGCQISRGVKHMHHPQQHVHQLHHVSEAAYSREMHTGDALPVSPGASEAAKPRRYKRAKEPKVLSPNKKTAKSPRKVKRENEDLNKVVFGKPSEWKSVQDLDGGDDDVNKQSTASKSDWKGQVLGLNQVTFDESTMPPPACSCTGVLRQCYKWGNGGWQSACCTTSLSMYPLPAVPNKRHARVGGRKMSGSAFNKLLTRLAAEGHDLSHPVDLKDHWAKHGTNRYITIK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	335	2.2.26 [Sep-21-2011]
Q8L999	342	Protein BASIC PENTACYSTEI	yes	no	0.964	0.944	0.689	1e-127
Q5VSA8	331	Barley B recombinant-like	yes	no	0.952	0.963	0.536	1e-90
Q8S8C6	296	Protein BASIC PENTACYSTEI	no	no	0.847	0.959	0.461	2e-76
F4JUI3	283	Protein BASIC PENTACYSTEI	no	no	0.826	0.978	0.469	4e-73
O82286	226	Protein BASIC PENTACYSTEI	no	no	0.343	0.508	0.591	1e-37
Q8GUC3	350	Protein Barley B recombin	N/A	no	0.388	0.371	0.519	2e-35
Q9C9X6	269	Protein BASIC PENTACYSTEI	no	no	0.310	0.386	0.586	2e-35
P0DH89	341	Barley B recombinant-like	no	no	0.477	0.469	0.408	1e-34
P0DH88	341	Barley B recombinant-like	no	no	0.477	0.469	0.408	1e-34
Q9LDE2	279	Protein BASIC PENTACYSTEI	no	no	0.316	0.379	0.556	7e-34

>sp|Q8L999|BPC6_ARATH Protein BASIC PENTACYSTEINE6 OS=Arabidopsis thaliana GN=BPC6 PE=1 SV=1

 Score =  454 bits (1169), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 244/354 (68%), Positives = 281/354 (79%), Gaps = 31/354 (8%)

Query: 1   MDDGGHRENGRHKADQYKAAQGQWLMHHQPSMKQIMTIMAERDAALQERNLATSEKKAAI 60
           MDDGGHRENGRHKA    A QGQWLM HQPSMKQ+M+I+AERDAA+QERNLA SEKKAA+
Sbjct: 1   MDDGGHRENGRHKA----AVQGQWLMQHQPSMKQVMSIIAERDAAIQERNLAISEKKAAV 56

Query: 61  AERDMAFLQRDTAIAERNNAILERDNAIASLQYRENSL----GGNMSSCPPGCQISRGVK 116
           AERDMAFLQRDTAIAERNNAI+ERD+A+ +LQYRENS+      NMS+CPPGCQISRGVK
Sbjct: 57  AERDMAFLQRDTAIAERNNAIMERDSALTALQYRENSMVTAPAANMSACPPGCQISRGVK 116

Query: 117 HMHHPQQHVHQ----LHHVSEAAY-SREMHTGDALPVSPGAS---EAAKPRRYKRAKEPK 168
           H+HHP  H H     +  ++E AY +REM   D LP SP A    E+AKP+R KR   PK
Sbjct: 117 HLHHPHMHHHHQQHHIPQLTENAYETREMEPNDGLPTSPPAGSTLESAKPKRGKRV-NPK 175

Query: 169 VLS---PNKKTAKSPRKVKRENED-LNKVVFGKPSEWKSVQDLDGGDDDVNKQS-TASKS 223
             +    NK+  K+ RKVK+E+ED LNK++F K +        D  D+D +K     SKS
Sbjct: 176 ATTQTAANKRGPKNQRKVKKESEDDLNKIMFVKTTH-------DYTDEDSSKHILIGSKS 228

Query: 224 DWKGQ-VLGLNQVTFDESTMPPPACSCTGVLRQCYKWGNGGWQSACCTTSLSMYPLPAVP 282
           DWK Q ++GLNQV +DE+TMPPP CSCTGVLRQCYKWGNGGWQS+CCTT+LSMYPLPA+P
Sbjct: 229 DWKSQEMVGLNQVVYDETTMPPPVCSCTGVLRQCYKWGNGGWQSSCCTTTLSMYPLPALP 288

Query: 283 NKRHARVGGRKMSGSAFNKLLTRLAAEG-HDLSHPVDLKDHWAKHGTNRYITIK 335
           NKRHARVGGRKMSGSAFNKLL+RLAAEG HDLS+PVDLKDHWAKHGTNRYITIK
Sbjct: 289 NKRHARVGGRKMSGSAFNKLLSRLAAEGHHDLSNPVDLKDHWAKHGTNRYITIK 342

Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes.
Arabidopsis thaliana (taxid: 3702)

>sp|Q5VSA8|BBRD_ORYSJ Barley B recombinant-like protein D OS=Oryza sativa subsp. japonica GN=Os06g0130600 PE=2 SV=1

 Score =  333 bits (853), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 186/347 (53%), Positives = 234/347 (67%), Gaps = 28/347 (8%)

Query: 1   MDDGGHRENGRHKADQYKAAQGQWLM-HHQPSMK-----QIMTIMAERDAALQERNLATS 54
           MD+ GHRENGR + DQYK    QW+M   Q  +K      ++ +M +RD A++ER+ A +
Sbjct: 1   MDNLGHRENGRQRPDQYKGLHTQWMMPQTQRHLKDHQSMNLLALMNDRDNAIRERDHALA 60

Query: 55  EKKAAIAERDMAFLQRDTAIAERNNAILERDNAIASLQY-RENSLGGNMSSCPPGCQISR 113
           EKKAAIAERDMAF QRD A+AERN A++ERDNA+A+L+  R N L  N  +  P   +S 
Sbjct: 61  EKKAAIAERDMAFTQRDAAMAERNAAVVERDNALAALELARTNGLNMNNGNGFPQGSLS- 119

Query: 114 GVKHMHHPQQHVHQLH---HVSEAAY--SREMHTGDALPVSPGASEAAKPRRYKRAKEPK 168
           G K++HH  Q  H       ++++ Y  +REMH  +A P+S     A K +R K  K   
Sbjct: 120 GSKNIHHHDQLSHAQSSPLQLADSPYDHAREMHISEAYPISTAPGSAGKAKRPK--KNSS 177

Query: 169 VLSPNKKTAKSPRKVKRENEDLNKVVFGKPSEWKSVQDLDGGDDDVNKQSTASKSDWKGQ 228
             SP K+ +   RK K+ + D           WK+V     GDD  +  ++  K++WK Q
Sbjct: 178 QASPLKRPSGVLRKTKKPSGD-----------WKNVGMSGCGDDSAH--ASVMKNEWKDQ 224

Query: 229 VLGLNQVTFDESTMPPPACSCTGVLRQCYKWGNGGWQSACCTTSLSMYPLPAVPNKRHAR 288
            LGLNQV FD+STMP PACSCTG LRQCYKWGNGGWQS+CCT ++SMYPLP +PNKRHAR
Sbjct: 225 NLGLNQVAFDDSTMPAPACSCTGKLRQCYKWGNGGWQSSCCTMNISMYPLPVMPNKRHAR 284

Query: 289 VGGRKMSGSAFNKLLTRLAAEGHDLSHPVDLKDHWAKHGTNRYITIK 335
           +GGRKMSG AF KLL+RLAAEGHDLS PVDLKDHWAKHGTNRYITI+
Sbjct: 285 MGGRKMSGGAFTKLLSRLAAEGHDLSTPVDLKDHWAKHGTNRYITIR 331

Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q8S8C6|BPC4_ARATH Protein BASIC PENTACYSTEINE4 OS=Arabidopsis thaliana GN=BPC4 PE=1 SV=1

 Score =  286 bits (732), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 160/347 (46%), Positives = 205/347 (59%), Gaps = 63/347 (18%)

Query: 1   MDDGGHRENGRHKADQYKAAQGQWLMHHQPSMKQ----------IMTIMAERDAALQERN 50
           M++GG  +N R K D +K AQ  W M  Q  +K+          IM+I+AERDAA+ ERN
Sbjct: 1   MENGGQYDNARFKPDYFKGAQSMWNMIPQHQIKEQHNALVMNKKIMSILAERDAAVHERN 60

Query: 51  LATSEKKAAIAERDMAFLQRDTAIAERNNAILERDNAIASLQYRENSLGGNMSS--CPPG 108
            A S KK A+A RD A  QRD A++ER+ A++ERDNA A+LQ+ ENSL   +S   C  G
Sbjct: 61  QAVSAKKEAVAARDEALQQRDKALSERDKALIERDNAYAALQHHENSLNFALSGGKCVDG 120

Query: 109 CQISRGVKHMHHPQQHVHQLHHVSEAAYSREMHTGDALPVSPGASEAAKPRRYKRAKEPK 168
                                   +     E H  +  P+S    E    +   + K   
Sbjct: 121 -----------------------DDCFGIGEPHKLEVFPLSTIPPEVTNTKVVNKRK--- 154

Query: 169 VLSPNKKTAKSPRKVKRENEDLNKVVFGKPSEWKSVQDLDGGDDDVNKQSTASKSDWKGQ 228
                K+  +   KVK+  EDLN+ V   P+  K                  S++DW  Q
Sbjct: 155 -----KENKQGLSKVKKVGEDLNRRV---PAPGKK-----------------SRTDWDSQ 189

Query: 229 VLGLNQVTFDESTMPPPACSCTGVLRQCYKWGNGGWQSACCTTSLSMYPLPAVPNKRHAR 288
            +GLN VTFDE+TMP P CSCTG  RQCYKWGNGGWQS+CCTT+LS YPLP +PNKRH+R
Sbjct: 190 DVGLNLVTFDETTMPVPMCSCTGSTRQCYKWGNGGWQSSCCTTTLSQYPLPQMPNKRHSR 249

Query: 289 VGGRKMSGSAFNKLLTRLAAEGHDLSHPVDLKDHWAKHGTNRYITIK 335
           +GGRKMSG+ F++LL+RL+AEG+DLS PVDLKD+WA+HGTNRYITIK
Sbjct: 250 MGGRKMSGNVFSRLLSRLSAEGYDLSCPVDLKDYWARHGTNRYITIK 296

Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes.

Arabidopsis thaliana (taxid: 3702)

>sp|F4JUI3|BPC5_ARATH Protein BASIC PENTACYSTEINE5 OS=Arabidopsis thaliana GN=BPC5 PE=1 SV=1

 Score =  275 bits (702), Expect = 4e-73,   Method: Compositional matrix adjust.
 Identities = 160/341 (46%), Positives = 204/341 (59%), Gaps = 64/341 (18%)

Query: 1   MDDGGHRENGRHKADQYKAAQGQWLM-----HHQPSM-KQIMTIMAERDAALQERNLATS 54
           M+ GG  ENGR+K D YK  Q   +M     H+   M K+I++I+AERDAA++ERN A +
Sbjct: 1   MESGGQYENGRYKPDYYKGTQSVNVMPKKEQHNALVMNKKIISILAERDAAVKERNEAVA 60

Query: 55  EKKAAIAERDMAFLQRDTAIAERNNAILERDNAIASLQYRENSLGGNMSSCPPGCQISRG 114
             K A+A RD A  QRD A++ER+NAI+E ++A+ +L+YREN+L   +S    G      
Sbjct: 61  ATKEALASRDEALEQRDKALSERDNAIMETESALNALRYRENNLNYILSCAKRGG----- 115

Query: 115 VKHMHHPQQHVHQLHHVSEAAYSREMHTGDALPVSPGASEAAKPRRYKRAKEPKVLSPNK 174
                            S+   + E H  +  P+S    EAA  R  KR KE K      
Sbjct: 116 -----------------SQRFITEESHLPNPSPISTIPPEAANTRPTKRKKESK------ 152

Query: 175 KTAKSPRKVKRENEDLNKVVFGKPSEWKSVQDLDGGDDDVNKQSTASKSDWKGQVLGLNQ 234
                  + K+  EDLN+ V   P + KS +D D  D                 VL    
Sbjct: 153 -------QGKKMGEDLNRPV-ASPGK-KSRKDWDSND-----------------VL---- 182

Query: 235 VTFDESTMPPPACSCTGVLRQCYKWGNGGWQSACCTTSLSMYPLPAVPNKRHARVGGRKM 294
           VTFDE TMP P C+CTG  RQCYKWGNGGWQS+CCTT+LS YPLP +PNKRH+RVGGRKM
Sbjct: 183 VTFDEMTMPVPMCTCTGTARQCYKWGNGGWQSSCCTTTLSEYPLPQMPNKRHSRVGGRKM 242

Query: 295 SGSAFNKLLTRLAAEGHDLSHPVDLKDHWAKHGTNRYITIK 335
           SGS F++LL+RLA EGH+LS PVDLK++WA+HGTNRYITIK
Sbjct: 243 SGSVFSRLLSRLAGEGHELSSPVDLKNYWARHGTNRYITIK 283

Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes.

Arabidopsis thaliana (taxid: 3702)

>sp|O82286|BPC7_ARATH Protein BASIC PENTACYSTEINE7 OS=Arabidopsis thaliana GN=BPC7 PE=1 SV=1

 Score =  157 bits (397), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 68/115 (59%), Positives = 87/115 (75%)

Query: 221 SKSDWKGQVLGLNQVTFDESTMPPPACSCTGVLRQCYKWGNGGWQSACCTTSLSMYPLPA 280
           +K + K   + ++  +FD S +PPP CSCTGV R CYKWG GGWQS+CCT S+S YPLP 
Sbjct: 112 TKREKKNLDINIDISSFDTSGVPPPVCSCTGVSRVCYKWGMGGWQSSCCTISISTYPLPM 171

Query: 281 VPNKRHARVGGRKMSGSAFNKLLTRLAAEGHDLSHPVDLKDHWAKHGTNRYITIK 335
              +  AR+ GRKMS  A+ KLL RLA EG+DLSHP+DLK+HWA+HGTN+++TIK
Sbjct: 172 STTRPGARLAGRKMSNGAYVKLLARLADEGYDLSHPLDLKNHWARHGTNKFVTIK 226

Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8GUC3|BBR_HORVU Protein Barley B recombinant OS=Hordeum vulgare GN=BBR PE=1 SV=1

 Score =  150 bits (378), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 68/131 (51%), Positives = 92/131 (70%), Gaps = 1/131 (0%)

Query: 206 DLDGGDDDVNK-QSTASKSDWKGQVLGLNQVTFDESTMPPPACSCTGVLRQCYKWGNGGW 264
           D   G+D   K ++  S+   K   + +N + FD S +P P CSCTG  +QCY+WG GGW
Sbjct: 220 DATPGEDGAPKARAPRSRGPLKPVEMVINGIDFDISRIPTPVCSCTGAPQQCYRWGAGGW 279

Query: 265 QSACCTTSLSMYPLPAVPNKRHARVGGRKMSGSAFNKLLTRLAAEGHDLSHPVDLKDHWA 324
           QSACCTTS+S YPLP    +R AR+ GRKMS  AF K+L +LA EG++L++P+DLK  WA
Sbjct: 280 QSACCTTSISTYPLPMNTKRRGARIAGRKMSQGAFKKVLEKLAGEGYNLNNPIDLKTFWA 339

Query: 325 KHGTNRYITIK 335
           KHGTN+++TI+
Sbjct: 340 KHGTNKFVTIR 350

Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. Positively regulates the homeotic gene BKN3.

Hordeum vulgare (taxid: 4513)

>sp|Q9C9X6|BPC3_ARATH Protein BASIC PENTACYSTEINE3 OS=Arabidopsis thaliana GN=BPC3 PE=1 SV=1

 Score =  150 bits (378), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 61/104 (58%), Positives = 82/104 (78%)

Query: 232 LNQVTFDESTMPPPACSCTGVLRQCYKWGNGGWQSACCTTSLSMYPLPAVPNKRHARVGG 291
           +N V+ D   +P P CSCTG+ +QCY+WG GGWQSACCTT++SMYPLP    +R AR+ G
Sbjct: 166 INGVSMDIGGLPVPVCSCTGMPQQCYRWGCGGWQSACCTTNVSMYPLPVNTKRRGARIAG 225

Query: 292 RKMSGSAFNKLLTRLAAEGHDLSHPVDLKDHWAKHGTNRYITIK 335
           RKMS  AF K+L +L+++G D S+P+DLK HWAKHGTN+++TI+
Sbjct: 226 RKMSQGAFRKVLEKLSSDGFDFSNPIDLKSHWAKHGTNKFVTIR 269

Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes.

Arabidopsis thaliana (taxid: 3702)

>sp|P0DH89|BBRB_ORYSJ Barley B recombinant-like protein B OS=Oryza sativa subsp. japonica GN=Os10g0115200 PE=2 SV=1

 Score =  147 bits (370), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 76/186 (40%), Positives = 106/186 (56%), Gaps = 26/186 (13%)

Query: 150 PGASEAAKPRRYKRAKEPKVLSPNKKTAKSPRKVKRENEDLNKVVFGKPSEWKSVQDLDG 209
           P   E   P++ ++ ++PKV       AK P+K     ED      G P           
Sbjct: 182 PVIDEPPPPKKRQQGRQPKV-----PRAKKPKKSAAPRED------GAPP---------- 220

Query: 210 GDDDVNKQSTASKSDWKGQVLGLNQVTFDESTMPPPACSCTGVLRQCYKWGNGGWQSACC 269
                N  +   +   K   + +N +  D S +P P CSCTG  +QCY+WG GGWQSACC
Sbjct: 221 -----NAPAPRRRGPRKNIGMVINGIDLDLSRIPTPICSCTGAPQQCYRWGAGGWQSACC 275

Query: 270 TTSLSMYPLPAVPNKRHARVGGRKMSGSAFNKLLTRLAAEGHDLSHPVDLKDHWAKHGTN 329
           TT++S YPLP    +R AR+ GRKMS  AF K+L +LA EG++L++P+DLK  WAKHGTN
Sbjct: 276 TTTISTYPLPMSTKRRGARIAGRKMSHGAFKKVLEKLAGEGYNLNNPIDLKTFWAKHGTN 335

Query: 330 RYITIK 335
           +++TI+
Sbjct: 336 KFVTIR 341

Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|P0DH88|BBRA_ORYSJ Barley B recombinant-like protein A OS=Oryza sativa subsp. japonica GN=Os10g0114500 PE=2 SV=1

 Score =  147 bits (370), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 76/186 (40%), Positives = 106/186 (56%), Gaps = 26/186 (13%)

Query: 150 PGASEAAKPRRYKRAKEPKVLSPNKKTAKSPRKVKRENEDLNKVVFGKPSEWKSVQDLDG 209
           P   E   P++ ++ ++PKV       AK P+K     ED      G P           
Sbjct: 182 PVIDEPPPPKKRQQGRQPKV-----PRAKKPKKSAAPRED------GAPP---------- 220

Query: 210 GDDDVNKQSTASKSDWKGQVLGLNQVTFDESTMPPPACSCTGVLRQCYKWGNGGWQSACC 269
                N  +   +   K   + +N +  D S +P P CSCTG  +QCY+WG GGWQSACC
Sbjct: 221 -----NAPAPRRRGPRKNIGMVINGIDLDLSRIPTPICSCTGAPQQCYRWGAGGWQSACC 275

Query: 270 TTSLSMYPLPAVPNKRHARVGGRKMSGSAFNKLLTRLAAEGHDLSHPVDLKDHWAKHGTN 329
           TT++S YPLP    +R AR+ GRKMS  AF K+L +LA EG++L++P+DLK  WAKHGTN
Sbjct: 276 TTTISTYPLPMSTKRRGARIAGRKMSHGAFKKVLEKLAGEGYNLNNPIDLKTFWAKHGTN 335

Query: 330 RYITIK 335
           +++TI+
Sbjct: 336 KFVTIR 341

Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q9LDE2|BPC2_ARATH Protein BASIC PENTACYSTEINE2 OS=Arabidopsis thaliana GN=BPC2 PE=1 SV=1

 Score =  144 bits (364), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 59/106 (55%), Positives = 82/106 (77%)

Query: 230 LGLNQVTFDESTMPPPACSCTGVLRQCYKWGNGGWQSACCTTSLSMYPLPAVPNKRHARV 289
           L +N V+ D S +P P C+CTG  +QCY+WG GGWQSACCTT++SM+PLP    +R AR+
Sbjct: 174 LVINGVSMDISGLPVPICTCTGAPQQCYRWGCGGWQSACCTTNISMHPLPMSTKRRGARI 233

Query: 290 GGRKMSGSAFNKLLTRLAAEGHDLSHPVDLKDHWAKHGTNRYITIK 335
            GRKMS  AF K+L +LA++G +  +P+DLK HWA+HGTN+++TI+
Sbjct: 234 SGRKMSQGAFKKVLEKLASDGFNFGNPIDLKSHWARHGTNKFVTIR 279

Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	335
255538854	339	conserved hypothetical protein [Ricinus	1.0	0.988	0.805	1e-159
363807974	338	uncharacterized protein LOC100783502 [Gl	1.0	0.991	0.807	1e-159
225458065	337	PREDICTED: protein BASIC PENTACYSTEINE6	1.0	0.994	0.824	1e-154
363808282	336	uncharacterized protein LOC100809369 [Gl	0.994	0.991	0.766	1e-149
357438223	340	GAGA-binding transcriptional activator [	0.988	0.973	0.752	1e-145
224082960	335	predicted protein [Populus trichocarpa]	0.994	0.994	0.768	1e-142
449469901	338	PREDICTED: protein BASIC PENTACYSTEINE6-	0.997	0.988	0.758	1e-142
224066007	336	predicted protein [Populus trichocarpa]	0.994	0.991	0.775	1e-139
118723368	318	GAGA-binding transcriptional activator [	0.919	0.968	0.754	1e-134
319718167	333	GAGA-binding transcriptional activator [	0.985	0.990	0.671	1e-131

>gi|255538854|ref|XP_002510492.1| conserved hypothetical protein [Ricinus communis] gi|223551193|gb|EEF52679.1| conserved hypothetical protein [Ricinus communis]

 Score =  568 bits (1463), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 273/339 (80%), Positives = 300/339 (88%), Gaps = 4/339 (1%)

Query: 1   MDDGGHRENGRHKADQYKAAQGQWLMHHQPSMKQIMTIMAERDAALQERNLATSEKKAAI 60
           MDDGGHRENGRHKADQYK AQGQWLM  QPSMKQIM IMAERDAA+ ERN+A SEKKAAI
Sbjct: 1   MDDGGHRENGRHKADQYKTAQGQWLMQAQPSMKQIMAIMAERDAAIHERNMAISEKKAAI 60

Query: 61  AERDMAFLQRDTAIAERNNAILERDNAIASLQYRENSL-GGNM-SSCPPGCQISRGVKHM 118
           AERDMAFLQRD+AIAERNNAI+ERDNAIA+LQYRENS+  GNM SSCPPGCQISRGVKHM
Sbjct: 61  AERDMAFLQRDSAIAERNNAIMERDNAIATLQYRENSIPSGNMPSSCPPGCQISRGVKHM 120

Query: 119 HHPQQHVHQLHHVSEAAYS-REMHTGDALPVSPGASEAAKPRRYKRAKEPKVLSPNKKTA 177
           HHPQQH H + H SEA+YS REM T D LP+SP  SEAAKPRR KR+K+ K+   NKKT+
Sbjct: 121 HHPQQHAHHMPHSSEASYSTREMQTSDTLPMSPVGSEAAKPRRVKRSKDAKMAPSNKKTS 180

Query: 178 KSPRKVKRENEDLNKVVFGKPSEWKSVQDLDGGDDDVNKQ-STASKSDWKGQVLGLNQVT 236
           KSPRK+KRE+EDLNKV+FGK  EWK+ QD+ GG DD+NKQ   ASKSDWKG  LGLNQ+ 
Sbjct: 181 KSPRKIKRESEDLNKVMFGKSHEWKNGQDMGGGADDLNKQLVVASKSDWKGHDLGLNQIA 240

Query: 237 FDESTMPPPACSCTGVLRQCYKWGNGGWQSACCTTSLSMYPLPAVPNKRHARVGGRKMSG 296
           FDESTMP P CSCTGV RQCYKWGNGGWQS+CCTT+LSM+PLPAVPNKRHARVGGRKMSG
Sbjct: 241 FDESTMPAPVCSCTGVFRQCYKWGNGGWQSSCCTTTLSMHPLPAVPNKRHARVGGRKMSG 300

Query: 297 SAFNKLLTRLAAEGHDLSHPVDLKDHWAKHGTNRYITIK 335
           SAF+KLL+RLAAEG+DLS PVDLK+HWAKHGTNRYITIK
Sbjct: 301 SAFSKLLSRLAAEGYDLSSPVDLKEHWAKHGTNRYITIK 339

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|363807974|ref|NP_001242458.1| uncharacterized protein LOC100783502 [Glycine max] gi|255635590|gb|ACU18145.1| unknown [Glycine max]

 Score =  566 bits (1459), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 273/338 (80%), Positives = 298/338 (88%), Gaps = 3/338 (0%)

Query: 1   MDDGGHRENGRHKA-DQYKAAQGQWLMHHQPSMKQIMTIMAERDAALQERNLATSEKKAA 59
           MDD GHRENGRHKA DQYK+AQ QWLM HQPSMKQIM IMAERDAA+QERNLA SEKKAA
Sbjct: 1   MDDAGHRENGRHKAADQYKSAQRQWLMQHQPSMKQIMAIMAERDAAIQERNLAISEKKAA 60

Query: 60  IAERDMAFLQRDTAIAERNNAILERDNAIASLQYRENSLG-GNMSSCPPGCQISRGVKHM 118
            AERDMAF+QRD AIAERNNAILERDNAIA+LQYRE SL  G+M SCPPGCQISRGVKH+
Sbjct: 61  YAERDMAFMQRDAAIAERNNAILERDNAIATLQYRETSLSSGSMPSCPPGCQISRGVKHI 120

Query: 119 HHPQQHVHQLHHVSEAAYS-REMHTGDALPVSPGASEAAKPRRYKRAKEPKVLSPNKKTA 177
           HHPQQ VH + ++ +A+YS REMHT DALP +P  SEA KPRR KR KEPK  SPNKKT+
Sbjct: 121 HHPQQQVHHIPNMGDASYSTREMHTTDALPAAPIPSEAGKPRRAKRPKEPKSASPNKKTS 180

Query: 178 KSPRKVKRENEDLNKVVFGKPSEWKSVQDLDGGDDDVNKQSTASKSDWKGQVLGLNQVTF 237
           K  +KVK+E+EDLNKV+FGK  EWKS Q++  G DD+NKQ T SK+DWKGQ LGLNQV +
Sbjct: 181 KPAKKVKKESEDLNKVMFGKSHEWKSGQEMVNGGDDLNKQLTVSKADWKGQDLGLNQVAY 240

Query: 238 DESTMPPPACSCTGVLRQCYKWGNGGWQSACCTTSLSMYPLPAVPNKRHARVGGRKMSGS 297
           DESTMP P CSCTGVLRQCYKWGNGGWQSACCTT+LSMYPLPAVPNKRHARVGGRKMSGS
Sbjct: 241 DESTMPAPVCSCTGVLRQCYKWGNGGWQSACCTTTLSMYPLPAVPNKRHARVGGRKMSGS 300

Query: 298 AFNKLLTRLAAEGHDLSHPVDLKDHWAKHGTNRYITIK 335
           AFNKLL+RLAAEGHDLS+PVDLKDHWAKHGTNRYITIK
Sbjct: 301 AFNKLLSRLAAEGHDLSNPVDLKDHWAKHGTNRYITIK 338

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225458065|ref|XP_002278539.1| PREDICTED: protein BASIC PENTACYSTEINE6 [Vitis vinifera] gi|183604863|gb|ACC64529.1| GAGA-binding transcriptional activator BBR/BPC6-like [Vitis vinifera] gi|183604865|gb|ACC64530.1| GAGA-binding transcriptional activator BBR/BPC6-like [Vitis vinifera]

 Score =  551 bits (1420), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 278/337 (82%), Positives = 295/337 (87%), Gaps = 2/337 (0%)

Query: 1   MDDGGHRENGRHKADQYKAAQGQWLMHHQPSMKQIMTIMAERDAALQERNLATSEKKAAI 60
           MD+GGHRENGRHKAD YKA   QWLM HQP+MKQIM IMAERD A+QERNLA SEKKAA+
Sbjct: 1   MDEGGHRENGRHKADPYKAVHSQWLMQHQPTMKQIMAIMAERDTAVQERNLALSEKKAAV 60

Query: 61  AERDMAFLQRDTAIAERNNAILERDNAIASLQYRENSL-GGNMSSCPPGCQISRGVKHMH 119
           AERDMAFLQRDTAIAERNNAI+ERDNAIA+LQYRENSL GGNMS CPPGCQISRGVKHMH
Sbjct: 61  AERDMAFLQRDTAIAERNNAIMERDNAIATLQYRENSLNGGNMSPCPPGCQISRGVKHMH 120

Query: 120 HPQQHVHQLHHVSEAAYS-REMHTGDALPVSPGASEAAKPRRYKRAKEPKVLSPNKKTAK 178
           HPQ H+H   H+SEAAYS REMH GDALPVSP ASEAAK RR KR KE K +S NKK +K
Sbjct: 121 HPQPHLHHPTHLSEAAYSAREMHIGDALPVSPVASEAAKSRRAKRPKEAKPMSSNKKASK 180

Query: 179 SPRKVKRENEDLNKVVFGKPSEWKSVQDLDGGDDDVNKQSTASKSDWKGQVLGLNQVTFD 238
             +K KRE EDLNK+VFGK  EWK  QD+  G DD+NKQ   SKSDWKGQ LGLNQVTFD
Sbjct: 181 PLKKPKREGEDLNKIVFGKSREWKGGQDMSSGGDDLNKQLVVSKSDWKGQDLGLNQVTFD 240

Query: 239 ESTMPPPACSCTGVLRQCYKWGNGGWQSACCTTSLSMYPLPAVPNKRHARVGGRKMSGSA 298
           ESTMP P CSCTGVLRQCYKWGNGGWQS+CCTT+LSMYPLPAVPNKRHARVGGRKMSGSA
Sbjct: 241 ESTMPAPVCSCTGVLRQCYKWGNGGWQSSCCTTTLSMYPLPAVPNKRHARVGGRKMSGSA 300

Query: 299 FNKLLTRLAAEGHDLSHPVDLKDHWAKHGTNRYITIK 335
           FNKLL+RLAAEGHDLS PVDLKDHWAKHGTNRYITIK
Sbjct: 301 FNKLLSRLAAEGHDLSIPVDLKDHWAKHGTNRYITIK 337

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|363808282|ref|NP_001242497.1| uncharacterized protein LOC100809369 [Glycine max] gi|255635231|gb|ACU17970.1| unknown [Glycine max]

 Score =  533 bits (1374), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 259/338 (76%), Positives = 290/338 (85%), Gaps = 5/338 (1%)

Query: 1   MDDGGHRENGRHKA-DQYKAAQGQWLMHHQPSMKQIMTIMAERDAALQERNLATSEKKAA 59
           MDD GHRENGRHKA DQYK+AQGQWLM HQPSMKQIM ++AERDAA+QERNLA SEKKAA
Sbjct: 1   MDDAGHRENGRHKAADQYKSAQGQWLMQHQPSMKQIMAMIAERDAAIQERNLAISEKKAA 60

Query: 60  IAERDMAFLQRDTAIAERNNAILERDNAIASLQYRENSLG-GNMSSCPPGCQISRGVKHM 118
            AERDMA++QRD AIAERNNA+LERD AIA+LQYRE SL  G+M SCPPGCQISRGVKH+
Sbjct: 61  YAERDMAYMQRDAAIAERNNAMLERD-AIATLQYRETSLSSGSMPSCPPGCQISRGVKHV 119

Query: 119 HHPQQHVHQLHHVSEAAY-SREMHTGDALPVSPGASEAAKPRRYKRAKEPKVLSPNKKTA 177
           HHPQQ VH + ++ +A+Y +REMHT + LP +P  SE  K RR KR KEPK   PNKKT+
Sbjct: 120 HHPQQQVHHIPNMGDASYNTREMHTTEVLPAAPIPSETGKSRRAKRPKEPKSAPPNKKTS 179

Query: 178 KSPRKVKRENEDLNKVVFGKPSEWKSVQDLDGGDDDVNKQSTASKSDWKGQVLGLNQVTF 237
           K  +KVK+E+EDLN + FGK  EWKS Q++  G DD+NKQ   SK+DWKGQ LGLNQV +
Sbjct: 180 KPSKKVKKESEDLNNM-FGKAHEWKSGQEMVNGGDDLNKQLAVSKADWKGQDLGLNQVAY 238

Query: 238 DESTMPPPACSCTGVLRQCYKWGNGGWQSACCTTSLSMYPLPAVPNKRHARVGGRKMSGS 297
           DESTMP P CSCTGVLRQCYKWGNGGWQSACCTT+LSMYPLPAVPNKRHARVGGRKMSGS
Sbjct: 239 DESTMPAPVCSCTGVLRQCYKWGNGGWQSACCTTTLSMYPLPAVPNKRHARVGGRKMSGS 298

Query: 298 AFNKLLTRLAAEGHDLSHPVDLKDHWAKHGTNRYITIK 335
           AFNKLL+RLAAE HDLS+PVDLKDHWAKHGTNRYITIK
Sbjct: 299 AFNKLLSRLAAESHDLSNPVDLKDHWAKHGTNRYITIK 336

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357438223|ref|XP_003589387.1| GAGA-binding transcriptional activator [Medicago truncatula] gi|355478435|gb|AES59638.1| GAGA-binding transcriptional activator [Medicago truncatula]

 Score =  519 bits (1337), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 259/344 (75%), Positives = 292/344 (84%), Gaps = 13/344 (3%)

Query: 1   MDDGGHRENGRHKADQYKAAQGQWLM----HHQPSMKQIMTIMAERDAALQERNLATSEK 56
           MDD   RENGRHKADQYK+AQGQWLM    H  PSMKQIM+IMAERDAA+QERNLA SEK
Sbjct: 1   MDD---RENGRHKADQYKSAQGQWLMQQHQHQHPSMKQIMSIMAERDAAIQERNLALSEK 57

Query: 57  KAAIAERDMAFLQRDTAIAERNNAILERDNAIASLQYRENSLG-GNMSSCPPGCQISRGV 115
           KAA+AERDMAFLQRDTAIAERNNA++ERDNAIA+LQ+REN+L  G MSSCPPGCQISRGV
Sbjct: 58  KAALAERDMAFLQRDTAIAERNNALMERDNAIATLQFRENALANGGMSSCPPGCQISRGV 117

Query: 116 KHMHHPQQHVHQLHHVSEAAY-SREMHTGDALPVSPGASEAAKP-RRYKRAKEPKVLSPN 173
           KH+HH  Q V+ L ++ +++Y +RE+HT DALP +P + E  KP RR KR KE K  SPN
Sbjct: 118 KHIHHLPQQVNHLPNMGDSSYGTRELHTTDALPAAPVSLEVGKPPRRAKRPKESKSDSPN 177

Query: 174 KKTAKSPRKVKRENEDLNKVVFG--KPSEWKSVQDLDGGDDDVNKQSTASKSDWKGQVLG 231
           KKT KS RKVK+E +DLNK +F   K  EWKS +++  GDDD+NKQ   SK+DWK Q L 
Sbjct: 178 KKTPKS-RKVKKEGDDLNKTMFANNKELEWKSSEEIINGDDDLNKQLAISKADWKPQDLA 236

Query: 232 LNQVTFDESTMPPPACSCTGVLRQCYKWGNGGWQSACCTTSLSMYPLPAVPNKRHARVGG 291
           LNQV +D+STMP PACSCTGVLRQCYKWGNGGWQSACCTT+LS+YPLPAVPNKRHARVGG
Sbjct: 237 LNQVAYDDSTMPAPACSCTGVLRQCYKWGNGGWQSACCTTTLSVYPLPAVPNKRHARVGG 296

Query: 292 RKMSGSAFNKLLTRLAAEGHDLSHPVDLKDHWAKHGTNRYITIK 335
           RKMSGSAFNKLL+RLAAEGHDLSHPVDLKDHWAKHGTNRYITIK
Sbjct: 297 RKMSGSAFNKLLSRLAAEGHDLSHPVDLKDHWAKHGTNRYITIK 340

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224082960|ref|XP_002306908.1| predicted protein [Populus trichocarpa] gi|222856357|gb|EEE93904.1| predicted protein [Populus trichocarpa]

 Score =  511 bits (1315), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 259/337 (76%), Positives = 287/337 (85%), Gaps = 4/337 (1%)

Query: 1   MDDGGHRENGRHKADQYKAAQGQWLMHHQPSMKQIMTIMAERDAALQERNLATSEKKAAI 60
           MDDG HRENGRHKADQYK AQGQWLM  QPSMKQIM IMAERDAA+ ERN+A SEKKAA+
Sbjct: 1   MDDGVHRENGRHKADQYKTAQGQWLMQPQPSMKQIMAIMAERDAAIHERNMALSEKKAAV 60

Query: 61  AERDMAFLQRDTAIAERNNAILERDNAIASLQYRENSLG-GNMSSCPPGCQISRGVKHMH 119
           AERDMAFLQRD+AIAERNNA+LERDNAIA+LQYRENS    N SS PPG   SRGVKHMH
Sbjct: 61  AERDMAFLQRDSAIAERNNALLERDNAIATLQYRENSFASANTSSSPPGYHNSRGVKHMH 120

Query: 120 HPQQHVHQLHHVSEAAY-SREMHTGDALPVSPGASEAAKPRRYKRAKEPKVLSPNKKTAK 178
           H QQ    L H++E AY +REM T DA+P+SP ASEAAKPRR KR K+ +    NKKT+K
Sbjct: 121 H-QQQHIHLPHMNEGAYGTREMQTSDAVPISPVASEAAKPRRGKRPKDTQSTPSNKKTSK 179

Query: 179 SPRKVKRENEDLNKVVFGKPSEWKSVQDLDGGDDDVNKQSTASKSDWKGQVLGLNQVTFD 238
           SP KVKRE+EDLN + FGK +EWK+ +D++GG D +NKQ  ASKSDWKGQ LGLNQV FD
Sbjct: 180 SPMKVKRESEDLNNM-FGKSNEWKNGEDMNGGGDGLNKQLAASKSDWKGQDLGLNQVAFD 238

Query: 239 ESTMPPPACSCTGVLRQCYKWGNGGWQSACCTTSLSMYPLPAVPNKRHARVGGRKMSGSA 298
           E+TMP P CSCTG  RQCYKWGNGGWQS+CCTT+LSMYPLPAVPNKRHARVGGRKMSGSA
Sbjct: 239 ETTMPAPVCSCTGFFRQCYKWGNGGWQSSCCTTALSMYPLPAVPNKRHARVGGRKMSGSA 298

Query: 299 FNKLLTRLAAEGHDLSHPVDLKDHWAKHGTNRYITIK 335
           F+KLL+RLAAEG DLS+PVDLKDHWAKHGTNRYITIK
Sbjct: 299 FSKLLSRLAAEGQDLSNPVDLKDHWAKHGTNRYITIK 335

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449469901|ref|XP_004152657.1| PREDICTED: protein BASIC PENTACYSTEINE6-like [Cucumis sativus] gi|449517054|ref|XP_004165561.1| PREDICTED: protein BASIC PENTACYSTEINE6-like [Cucumis sativus]

 Score =  510 bits (1313), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 257/339 (75%), Positives = 285/339 (84%), Gaps = 5/339 (1%)

Query: 1   MDDGGHRENGRHKADQYKAAQGQWLMHHQPSMKQIMTIMAERDAALQERNLATSEKKAAI 60
           MDD GHRENGRHK DQYK+AQGQW+M HQPSMKQIM IMAERDAA+QERNLA SEKKAA+
Sbjct: 1   MDDSGHRENGRHKPDQYKSAQGQWMMQHQPSMKQIMAIMAERDAAIQERNLALSEKKAAL 60

Query: 61  AERDMAFLQRDTAIAERNNAILERDNAIASLQYRENSLGGNMSSCPPGCQISRGVKHMHH 120
           AERDMA+LQRD AIAERNNA+LERDNAIA+LQYRENS+  N+S CPPGCQI+RGVKH+HH
Sbjct: 61  AERDMAYLQRDAAIAERNNALLERDNAIATLQYRENSINNNLS-CPPGCQIARGVKHIHH 119

Query: 121 PQQHVHQ-LHHVSEAAY-SREM-HTGDALPVSPGASEAAKPRRYKRAKEPKVL-SPNKKT 176
           PQQ     + H++E  Y SREM  + D  P SP ASE+ K RR KR KE K + +PNKK 
Sbjct: 120 PQQQHTHHVPHMNENNYNSREMLASNDPCPTSPVASESTKARRNKRPKEGKTVPTPNKKV 179

Query: 177 AKSPRKVKRENEDLNKVVFGKPSEWKSVQDLDGGDDDVNKQSTASKSDWKGQVLGLNQVT 236
           +K PRKVKRE EDLNK++ GK  EWK    +    DD+NKQ   SKSDWKGQ LGLNQV 
Sbjct: 180 SKGPRKVKREAEDLNKIMLGKSQEWKDGIGIMSAGDDLNKQLVVSKSDWKGQDLGLNQVA 239

Query: 237 FDESTMPPPACSCTGVLRQCYKWGNGGWQSACCTTSLSMYPLPAVPNKRHARVGGRKMSG 296
           FDESTMP P CSCTGV+RQCYKWGNGGWQSACCTT+LSMYPLPAVPNKRHAR+GGRKMSG
Sbjct: 240 FDESTMPAPICSCTGVIRQCYKWGNGGWQSACCTTTLSMYPLPAVPNKRHARLGGRKMSG 299

Query: 297 SAFNKLLTRLAAEGHDLSHPVDLKDHWAKHGTNRYITIK 335
           SAFNKLL+RLAAEGHDLS PVDLK+HWAKHGTNRYITIK
Sbjct: 300 SAFNKLLSRLAAEGHDLSAPVDLKNHWAKHGTNRYITIK 338

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224066007|ref|XP_002301996.1| predicted protein [Populus trichocarpa] gi|222843722|gb|EEE81269.1| predicted protein [Populus trichocarpa] gi|319718087|gb|ADV59345.1| GAGA-binding transcriptional activator [Populus trichocarpa] gi|319718089|gb|ADV59346.1| GAGA-binding transcriptional activator [Populus trichocarpa]

 Score =  499 bits (1285), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 262/338 (77%), Positives = 287/338 (84%), Gaps = 5/338 (1%)

Query: 1   MDDGGHRENGRHKADQYKAAQGQWLMHHQPSMKQIMTIMAERDAALQERNLATSEKKAAI 60
           MDDGGHRENGRHKADQYK AQGQWLM  QPSMKQIM IMAERDAA+ ERN+A SEKKAAI
Sbjct: 1   MDDGGHRENGRHKADQYKTAQGQWLMQPQPSMKQIMAIMAERDAAIHERNMALSEKKAAI 60

Query: 61  AERDMAFLQRDTAIAERNNAILERDNAIASLQYRENSL-GGNMSSCPPGCQISRGVKHMH 119
            ERDMAFLQRD+AIAERNNA+LERDNAIA+LQYRENSL  GNM++CPPG   SRGVKHMH
Sbjct: 61  TERDMAFLQRDSAIAERNNALLERDNAIATLQYRENSLPSGNMTTCPPGFHNSRGVKHMH 120

Query: 120 HPQQHVHQLHH-VSEAAY-SREMHTGDALPVSPGASEAAKPRRYKRAKEPKVLSPNKKTA 177
           H QQ        ++E  Y +REM T DALPVSP ASE AKP+R KR K+ K    NKKT+
Sbjct: 121 HQQQQHTHHLPHMNEGPYGTREMQTSDALPVSPVASEVAKPQRGKRPKDAKATPSNKKTS 180

Query: 178 KSPRKVKRENEDLNKVVFGKPSEWKSVQDLDGGDDDVNKQSTASKSDWKGQVLGLNQVTF 237
           KSPRKVKRE++D +  +FGK  EWK+ QD+DGG DD NKQ  ASKSDWKGQ LGLNQV F
Sbjct: 181 KSPRKVKRESDDTD--MFGKSHEWKNGQDMDGGGDDPNKQLAASKSDWKGQDLGLNQVAF 238

Query: 238 DESTMPPPACSCTGVLRQCYKWGNGGWQSACCTTSLSMYPLPAVPNKRHARVGGRKMSGS 297
           DE+TMP P CSCTGV RQCYKWGNGGWQS+CCTT+LSMYPLPAVPNKRHARVGGRKMSGS
Sbjct: 239 DETTMPAPVCSCTGVFRQCYKWGNGGWQSSCCTTTLSMYPLPAVPNKRHARVGGRKMSGS 298

Query: 298 AFNKLLTRLAAEGHDLSHPVDLKDHWAKHGTNRYITIK 335
           AF+KLL+RLAAEG DLS+PVDLKDHWAKHGTNRYITIK
Sbjct: 299 AFSKLLSRLAAEGQDLSNPVDLKDHWAKHGTNRYITIK 336

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118723368|gb|ABL10371.1| GAGA-binding transcriptional activator [Medicago truncatula] gi|118723370|gb|ABL10372.1| GAGA-binding transcriptional activator [Medicago truncatula]

 Score =  483 bits (1242), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 237/314 (75%), Positives = 269/314 (85%), Gaps = 6/314 (1%)

Query: 27  HHQPSMKQIMTIMAERDAALQERNLATSEKKAAIAERDMAFLQRDTAIAERNNAILERDN 86
           H  PSMKQIM+IMAERDAA+QERNLA SEKKAA+AERDMAFLQRDTAIAERNNA++ERDN
Sbjct: 6   HQHPSMKQIMSIMAERDAAIQERNLALSEKKAALAERDMAFLQRDTAIAERNNALMERDN 65

Query: 87  AIASLQYRENSLG-GNMSSCPPGCQISRGVKHMHHPQQHVHQLHHVSEAAY-SREMHTGD 144
           AIA+LQ+REN+L  G MSSCPPGCQISRGVKH+HH  Q V+ L ++ +++Y +RE+HT D
Sbjct: 66  AIATLQFRENALANGGMSSCPPGCQISRGVKHIHHLPQQVNHLPNMGDSSYGTRELHTTD 125

Query: 145 ALPVSPGASEAAKP-RRYKRAKEPKVLSPNKKTAKSPRKVKRENEDLNKVVFG--KPSEW 201
           ALP +P + E  KP RR KR KE K  SPNKKT KS RKVK+E +DLNK +F   K  EW
Sbjct: 126 ALPAAPVSLEVGKPPRRAKRPKESKSDSPNKKTPKS-RKVKKEGDDLNKTMFANNKELEW 184

Query: 202 KSVQDLDGGDDDVNKQSTASKSDWKGQVLGLNQVTFDESTMPPPACSCTGVLRQCYKWGN 261
           KS +++  GDDD+NKQ   SK+DWK Q L LNQV +D+STMP PACSCTGVLRQCYKWGN
Sbjct: 185 KSSEEIINGDDDLNKQLAISKADWKPQDLALNQVAYDDSTMPAPACSCTGVLRQCYKWGN 244

Query: 262 GGWQSACCTTSLSMYPLPAVPNKRHARVGGRKMSGSAFNKLLTRLAAEGHDLSHPVDLKD 321
           GGWQSACCTT+LS+YPLPAVPNKRHARVGGRKMSGSAFNKLL+RLAAEGHDLSHPVDLKD
Sbjct: 245 GGWQSACCTTTLSVYPLPAVPNKRHARVGGRKMSGSAFNKLLSRLAAEGHDLSHPVDLKD 304

Query: 322 HWAKHGTNRYITIK 335
           HWAKHGTNRYITIK
Sbjct: 305 HWAKHGTNRYITIK 318

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|319718167|gb|ADV59385.1| GAGA-binding transcriptional activator [Nicotiana tabacum]

 Score =  473 bits (1217), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 227/338 (67%), Positives = 269/338 (79%), Gaps = 8/338 (2%)

Query: 1   MDDGGHRENGRHKADQYKAAQGQWLMHHQPSMKQIMTIMAERDAALQERNLATSEKKAAI 60
           MDD G+ EN RHK       QGQW M HQPSMKQIM IM ERDAA+QERNLA SEK+AA+
Sbjct: 1   MDDSGNHENARHKP-----PQGQWFMQHQPSMKQIMAIMGERDAAIQERNLALSEKRAAL 55

Query: 61  AERDMAFLQRDTAIAERNNAILERDNAIASLQYRENSLG-GNMSSCPPGCQISRGVKHMH 119
           AERDMA LQRD+AIAERN+AI+ERDNAIA+LQYRENS+  GNMS CPPGCQI+  VKHMH
Sbjct: 56  AERDMAILQRDSAIAERNSAIMERDNAIATLQYRENSMNSGNMSPCPPGCQIAHEVKHMH 115

Query: 120 HPQQHVHQLHHVSEAAYSR-EMHTGDA-LPVSPGASEAAKPRRYKRAKEPKVLSPNKKTA 177
           HPQ HVH    + E  ++  +MH  ++ +P+SP A E  K RR KR+KE K ++ +K+T+
Sbjct: 116 HPQLHVHHQPQLGEPTFNHSDMHMSESSIPLSPAAPELTKSRRNKRSKEAKEVTSSKRTS 175

Query: 178 KSPRKVKRENEDLNKVVFGKPSEWKSVQDLDGGDDDVNKQSTASKSDWKGQVLGLNQVTF 237
           K  +KVK+E EDLNK +  +  EW   Q++ GG+DDVN+Q   +K+DWK Q  GLNQV+F
Sbjct: 176 KPSKKVKKEGEDLNKTMLDESQEWNGAQEMGGGNDDVNRQLGVTKTDWKDQGRGLNQVSF 235

Query: 238 DESTMPPPACSCTGVLRQCYKWGNGGWQSACCTTSLSMYPLPAVPNKRHARVGGRKMSGS 297
           DESTMP P CSCTG LR  YKWGNGGWQS+CCT +LSMYPLP +PNKRHAR+GGRKMSGS
Sbjct: 236 DESTMPVPVCSCTGDLRPSYKWGNGGWQSSCCTNNLSMYPLPMLPNKRHARIGGRKMSGS 295

Query: 298 AFNKLLTRLAAEGHDLSHPVDLKDHWAKHGTNRYITIK 335
           AF KLL+RLAAEGHDLS+PVDLKD+WAKHGTNRYITIK
Sbjct: 296 AFTKLLSRLAAEGHDLSNPVDLKDNWAKHGTNRYITIK 333

Source: Nicotiana tabacum

Species: Nicotiana tabacum

Genus: Nicotiana

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	335
TAIR|locus:2162291	342	BPC6 "basic pentacysteine 6" [	0.964	0.944	0.666	1.5e-115
TAIR|locus:2053086	296	BPC4 "basic pentacysteine 4" [	0.370	0.418	0.695	4.1e-73
UNIPROTKB|Q8GUC3	350	BBR "Protein Barley B recombin	0.492	0.471	0.452	1.8e-41
TAIR|locus:2823945	279	BPC2 "basic pentacysteine 2" [	0.408	0.491	0.474	1e-36
TAIR|locus:2045842	283	BPC1 "basic pentacysteine1" [A	0.4	0.473	0.477	9.5e-34

TAIR|locus:2162291 BPC6 "basic pentacysteine 6" [Arabidopsis thaliana (taxid:3702)]

 Score = 1139 (406.0 bits), Expect = 1.5e-115, P = 1.5e-115
 Identities = 236/354 (66%), Positives = 270/354 (76%)

Query:     1 MDDGGHRENGRHKADQYKAAQGQWLMHHQPSMKQIMTIMAERDAALQERNLATSEKKAAI 60
             MDDGGHRENGRHKA    A QGQWLM HQPSMKQ+M+I+AERDAA+QERNLA SEKKAA+
Sbjct:     1 MDDGGHRENGRHKA----AVQGQWLMQHQPSMKQVMSIIAERDAAIQERNLAISEKKAAV 56

Query:    61 AERDMAFLQRDTAIAERNNAILERDNAIASLQYRENSL----GGNMSSCPPGCQISRGXX 116
             AERDMAFLQRDTAIAERNNAI+ERD+A+ +LQYRENS+      NMS+CPPGCQISRG  
Sbjct:    57 AERDMAFLQRDTAIAERNNAIMERDSALTALQYRENSMVTAPAANMSACPPGCQISRGVK 116

Query:   117 XXXXXXXXXXXXXXX----SEAAY-SREMHTGDALPVSPGAS---EAAKPRRYKRAKEPK 168
                                +E AY +REM   D LP SP A    E+AKP+R KR   PK
Sbjct:   117 HLHHPHMHHHHQQHHIPQLTENAYETREMEPNDGLPTSPPAGSTLESAKPKRGKRVN-PK 175

Query:   169 VLSP---NKKTAKSPRKVKRENED-LNKVVFGKPSEWKSVQDLDGGDDDVNKQST-ASKS 223
               +    NK+  K+ RKVK+E+ED LNK++F K +        D  D+D +K     SKS
Sbjct:   176 ATTQTAANKRGPKNQRKVKKESEDDLNKIMFVKTTH-------DYTDEDSSKHILIGSKS 228

Query:   224 DWKGQ-VLGLNQVTFDESTMPPPACSCTGVLRQCYKWGNGGWQSACCTTSLSMYPLPAVP 282
             DWK Q ++GLNQV +DE+TMPPP CSCTGVLRQCYKWGNGGWQS+CCTT+LSMYPLPA+P
Sbjct:   229 DWKSQEMVGLNQVVYDETTMPPPVCSCTGVLRQCYKWGNGGWQSSCCTTTLSMYPLPALP 288

Query:   283 NKRHARVGGRKMSGSAFNKLLTRLAAEGH-DLSHPVDLKDHWAKHGTNRYITIK 335
             NKRHARVGGRKMSGSAFNKLL+RLAAEGH DLS+PVDLKDHWAKHGTNRYITIK
Sbjct:   289 NKRHARVGGRKMSGSAFNKLLSRLAAEGHHDLSNPVDLKDHWAKHGTNRYITIK 342

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0003677 "DNA binding" evidence=IPI

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IPI

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IPI

GO:0005515 "protein binding" evidence=IPI

GO:0005730 "nucleolus" evidence=IDA

GO:0042803 "protein homodimerization activity" evidence=IDA

GO:0009723 "response to ethylene stimulus" evidence=IGI

TAIR|locus:2053086 BPC4 "basic pentacysteine 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 509 (184.2 bits), Expect = 4.1e-73, Sum P(2) = 4.1e-73
 Identities = 89/128 (69%), Positives = 110/128 (85%)

Query:   212 DDVNKQSTA----SKSDWKGQVLGLNQVTFDESTMPPPACSCTGVLRQCYKWGNGGWQSA 267
             +D+N++  A    S++DW  Q +GLN VTFDE+TMP P CSCTG  RQCYKWGNGGWQS+
Sbjct:   169 EDLNRRVPAPGKKSRTDWDSQDVGLNLVTFDETTMPVPMCSCTGSTRQCYKWGNGGWQSS 228

Query:   268 CCTTSLSMYPLPAVPNKRHARVGGRKMSGSAFNKLLTRLAAEGHDLSHPVDLKDHWAKHG 327
             CCTT+LS YPLP +PNKRH+R+GGRKMSG+ F++LL+RL+AEG+DLS PVDLKD+WA+HG
Sbjct:   229 CCTTTLSQYPLPQMPNKRHSRMGGRKMSGNVFSRLLSRLSAEGYDLSCPVDLKDYWARHG 288

Query:   328 TNRYITIK 335
             TNRYITIK
Sbjct:   289 TNRYITIK 296

GO:0005737 "cytoplasm" evidence=ISM

GO:0003677 "DNA binding" evidence=IPI

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IPI

GO:0005634 "nucleus" evidence=IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IPI

GO:0005515 "protein binding" evidence=IPI

GO:0042803 "protein homodimerization activity" evidence=IDA

GO:0009723 "response to ethylene stimulus" evidence=IGI

GO:0050793 "regulation of developmental process" evidence=IGI

UNIPROTKB|Q8GUC3 BBR "Protein Barley B recombinant" [Hordeum vulgare (taxid:4513)]

 Score = 393 (143.4 bits), Expect = 1.8e-41, Sum P(3) = 1.8e-41
 Identities = 77/170 (45%), Positives = 107/170 (62%)

Query:   167 PKVLSPNKKTAKSPRKVKRENEDLNKVVFGKPSEWKSVQDLDGGDDDVNK-QSTASKSDW 225
             P ++  +      P   KR+     KV   KP + K  +D   G+D   K ++  S+   
Sbjct:   185 PPLVEDHSVVGSKPPVKKRQQGRQPKVP--KPKKPK--KDATPGEDGAPKARAPRSRGPL 240

Query:   226 KGQVLGLNQVTFDESTMPPPACSCTGVLRQCYKWGNGGWQSACCTTSLSMYPLPAVPNKR 285
             K   + +N + FD S +P P CSCTG  +QCY+WG GGWQSACCTTS+S YPLP    +R
Sbjct:   241 KPVEMVINGIDFDISRIPTPVCSCTGAPQQCYRWGAGGWQSACCTTSISTYPLPMNTKRR 300

Query:   286 HARVGGRKMSGSAFNKLLTRLAAEGHDLSHPVDLKDHWAKHGTNRYITIK 335
              AR+ GRKMS  AF K+L +LA EG++L++P+DLK  WAKHGTN+++TI+
Sbjct:   301 GARIAGRKMSQGAFKKVLEKLAGEGYNLNNPIDLKTFWAKHGTNKFVTIR 350

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IDA

TAIR|locus:2823945 BPC2 "basic pentacysteine 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 366 (133.9 bits), Expect = 1.0e-36, Sum P(2) = 1.0e-36
 Identities = 66/139 (47%), Positives = 94/139 (67%)

Query:   197 KPSEWKSVQDLDGGDDDVNKQSTASKSDWKGQVLGLNQVTFDESTMPPPACSCTGVLRQC 256
             KP + K     +  +++ N   T  K   K   L +N V+ D S +P P C+CTG  +QC
Sbjct:   143 KPRKPKDENSNNNNNNNTNV--TRVKPAKKSVDLVINGVSMDISGLPVPICTCTGAPQQC 200

Query:   257 YKWGNGGWQSACCTTSLSMYPLPAVPNKRHARVGGRKMSGSAFNKLLTRLAAEGHDLSHP 316
             Y+WG GGWQSACCTT++SM+PLP    +R AR+ GRKMS  AF K+L +LA++G +  +P
Sbjct:   201 YRWGCGGWQSACCTTNISMHPLPMSTKRRGARISGRKMSQGAFKKVLEKLASDGFNFGNP 260

Query:   317 VDLKDHWAKHGTNRYITIK 335
             +DLK HWA+HGTN+++TI+
Sbjct:   261 IDLKSHWARHGTNKFVTIR 279

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0003677 "DNA binding" evidence=IPI

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IDA;IPI

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA;IPI

GO:0009723 "response to ethylene stimulus" evidence=IGI

GO:0050793 "regulation of developmental process" evidence=IGI

TAIR|locus:2045842 BPC1 "basic pentacysteine1" [Arabidopsis thaliana (taxid:3702)]

 Score = 367 (134.2 bits), Expect = 9.5e-34, P = 9.5e-34
 Identities = 64/134 (47%), Positives = 92/134 (68%)

Query:   202 KSVQDLDGGDDDVNKQSTASKSDWKGQVLGLNQVTFDESTMPPPACSCTGVLRQCYKWGN 261
             K  ++ D  +++V +Q    K   K   L +N V+ D S +P P C+CTG  +QCY+WG 
Sbjct:   150 KPKEERDVTNNNVQQQQQRVKPVKKSVDLVINGVSMDISGLPVPVCTCTGTPQQCYRWGC 209

Query:   262 GGWQSACCTTSLSMYPLPAVPNKRHARVGGRKMSGSAFNKLLTRLAAEGHDLSHPVDLKD 321
             GGWQSACCTT++S+YPLP    +R AR+ GRKMS  AF K+L +L+ EG+   + +DLK 
Sbjct:   210 GGWQSACCTTNISVYPLPMSTKRRGARISGRKMSQGAFKKVLEKLSTEGYSFGNAIDLKS 269

Query:   322 HWAKHGTNRYITIK 335
             HWA+HGTN+++TI+
Sbjct:   270 HWARHGTNKFVTIR 283


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.313   0.128   0.386    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      335       318   0.00083  116 3  11 23  0.45    34
                                                     33  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  5
  No. of states in DFA:  610 (65 KB)
  Total size of DFA:  238 KB (2128 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  29.21u 0.10s 29.31t   Elapsed:  00:00:02
  Total cpu time:  29.21u 0.10s 29.31t   Elapsed:  00:00:02
  Start:  Fri May 10 07:52:14 2013   End:  Fri May 10 07:52:16 2013

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0003677 "DNA binding" evidence=IDA;IPI

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IPI

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IPI

GO:0043565 "sequence-specific DNA binding" evidence=IDA

GO:0009723 "response to ethylene stimulus" evidence=IGI

GO:0050793 "regulation of developmental process" evidence=IGI

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q5VSA8	BBRD_ORYSJ	No assigned EC number	0.5360	0.9522	0.9637	yes	no
Q8L999	BPC6_ARATH	No assigned EC number	0.6892	0.9641	0.9444	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: estExt_fgenesh4_pm.C_LG_V0621 hypothetical protein (335 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	335
pfam06217	301	pfam06217, GAGA_bind, GAGA binding protein-like fa	1e-130

>gnl|CDD|218941 pfam06217, GAGA_bind, GAGA binding protein-like family

 Score =  374 bits (962), Expect = e-130
 Identities = 168/341 (49%), Positives = 199/341 (58%), Gaps = 46/341 (13%)

Query: 1   MDDGGHRENGRHKADQYKAAQGQWLMHHQPSMKQIMTIMAERDAALQERNLATSEKKAAI 60
           MDD GH  N R+    ++ AQ      +     Q+M+ +AERDA  +ERNLA SEKKAA 
Sbjct: 1   MDDDGHL-NIRNWGYYFEPAQAPSFKSNLG--LQLMSSIAERDAKPRERNLALSEKKAAY 57

Query: 61  AERDMAFLQRDTAIAERNNAILERDNAIASLQYRENSLGGNMSSCPPGCQISRGVKHMHH 120
           AERDMAFLQRD  IAERNNA++ERDN  A+LQ  ENSL       PPGC I  G K +HH
Sbjct: 58  AERDMAFLQRDAWIAERNNALMERDNKFAALQPVENSL-------PPGCGILPGTKGIHH 110

Query: 121 PQQHVHQLHHVSEAAYSREMHTGDALPVSPGASEAAKPR------RYKRAKEPKVLSPNK 174
            Q   H          +REMH  +  P+S    EA + +        K  K PK   P K
Sbjct: 111 LQML-HHPQLGDNPYGTREMHHLEVPPISTAPPEAKEVKKPKKGQSPKVPKAPKPKKPKK 169

Query: 175 KTAKSPRKVKRENEDLNKVVFGKPSEWKSVQDLDGGDDDVNKQSTASKSDWKGQVLGLNQ 234
           K + S R VK    D                               SK DWK Q L +N 
Sbjct: 170 KGSVSNRSVKMPGIDPR-----------------------------SKPDWKSQDLVING 200

Query: 235 VTFDESTMPPPACSCTGVLRQCYKWGNGGWQSACCTTSLSMYPLPAVPNKRHARVGGRKM 294
           V+ D S MP P CSCTG  RQCYKWGNGGWQSACCTT++SMYPLP    +R AR+ GRKM
Sbjct: 201 VSMDISGMPVPVCSCTGAPRQCYKWGNGGWQSACCTTTISMYPLPMSTKRRGARIAGRKM 260

Query: 295 SGSAFNKLLTRLAAEGHDLSHPVDLKDHWAKHGTNRYITIK 335
           SG AF KLL RLAAEG+DLS+P+DLKDHWAKHGTN+++TI+
Sbjct: 261 SGGAFKKLLERLAAEGYDLSNPIDLKDHWAKHGTNKFVTIR 301

This family includes gbp a protein from Soybean that binds to GAGA element dinucleotide repeat DNA. It seems likely that the this domain mediates DNA binding. This putative domain contains several conserved cysteines and a histidine suggesting this may be a zinc-binding DNA interaction domain. Length = 301

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	335
PF06217	301	GAGA_bind: GAGA binding protein-like family; Inter	100.0
PF06217	301	GAGA_bind: GAGA binding protein-like family; Inter	99.85
COG4372	499	Uncharacterized protein conserved in bacteria with	96.61
PF04094	828	DUF390: Protein of unknown function (DUF390); Inte	95.02
COG4372	499	Uncharacterized protein conserved in bacteria with	94.97
PF04094	828	DUF390: Protein of unknown function (DUF390); Inte	94.1
TIGR03319	514	YmdA_YtgF conserved hypothetical protein YmdA/YtgF	85.01
PRK12704	520	phosphodiesterase; Provisional	84.56
PRK12704	520	phosphodiesterase; Provisional	83.43
TIGR03319	514	YmdA_YtgF conserved hypothetical protein YmdA/YtgF	81.18

>PF06217 GAGA_bind: GAGA binding protein-like family; InterPro: IPR010409 This family includes gbp a protein from Soybean that binds to GAGA element dinucleotide repeat DNA []

Probab=100.00  E-value=4.1e-120  Score=858.98  Aligned_cols=300  Identities=61%  Similarity=0.946  Sum_probs=253.1

Q ss_pred             CCCCCcccCCccccccccccccccccCCCCcHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019800            1 MDDGGHRENGRHKADQYKAAQGQWLMHHQPSMKQIMTIMAERDAALQERNLATSEKKAAIAERDMAFLQRDTAIAERNNA   80 (335)
Q Consensus         1 md~~g~~engr~k~d~yk~~~~~w~m~~~~~~~~~~a~i~ERd~AI~ERd~AlaERd~Ai~qRD~AiaqRD~AI~ERD~A   80 (335)
                      |||+|++|  ||+. ||+-.  .++..|  ..++||++|.|||+||.||+.|++|+++|+++||+|++|||+||.|||+|
T Consensus         1 MDddg~~~--R~wg-~ye~~--~s~K~h--LGLqlMs~maERDaai~er~~al~ekk~a~aeRDma~~qRD~aiaern~a   73 (301)
T PF06217_consen    1 MDDDGSLE--RNWG-YYEPQ--NSMKGH--LGLQLMSIMAERDAAIRERNLALSEKKAAFAERDMAYLQRDAAIAERNNA   73 (301)
T ss_pred             CCCccccc--cCcc-ccccc--cccccc--ccceeeccccccCcccccccchhccccccccchhhhhhhhhhhhccchhh
Confidence            99999999  9999 99932  444443  36789999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhhhhccCCCCCCCCCCCCccccCccCCCCCcccccccccchhhhh-hccccCCCCCCCCCCCcCcCCcc
Q 019800           81 ILERDNAIASLQYRENSLGGNMSSCPPGCQISRGVKHMHHPQQHVHQLHHVSEAAY-SREMHTGDALPVSPGASEAAKPR  159 (335)
Q Consensus        81 I~eRD~aiaaL~~rensmng~~~~cpp~~g~krg~k~~hH~~~h~~~~~hisea~~-~~~~~~~~aspis~~~~e~~k~K  159 (335)
                      |+|||++|++|+|++++++   ..||++||+.++.+++||++++  +.+++.+..| ++++++.++.||+.++++.++++
T Consensus        74 i~ERd~a~a~l~~~~~~~n---~~~p~~~~~~~~tk~~~~~q~~--~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  148 (301)
T PF06217_consen   74 IMERDNAIAALQPRNNNGN---HHCPPGCGILPGTKHIHHMQQH--HHPQLQPPPYSTREMHNIDAPPISTAPPESKKSK  148 (301)
T ss_pred             cccchhhhhhccccCCCcc---ccCCCCCcccCCCccCCCcccc--cccccCCCCCCccccccccccccccCCcccccCC
Confidence            9999999999999999877   5689999999999999987663  2367788888 79999999999988766666665


Q ss_pred             cccccCCCCCCCCCCcCCCCcccccccccccccccccCCCcccccccCCCCCCcccccccccccccCccccccceeeeeC
Q 019800          160 RYKRAKEPKVLSPNKKTAKSPRKVKRENEDLNKVVFGKPSEWKSVQDLDGGDDDVNKQSTASKSDWKGQVLGLNQVTFDE  239 (335)
Q Consensus       160 R~Kr~KesK~~~~~kK~kK~~~k~kk~geDlnr~l~~~k~eWk~~Qdl~~G~n~v~~~~~~~~~~~~~~~~~~~~~~~d~  239 (335)
                      +.|+.+..+..+.++ .    ++.++.++++++.          ++ .. +.+      .+.+.+||++||+||+|+||+
T Consensus       149 ~~k~~~~~~~~k~~k-~----~k~kk~~~~~~~~----------~~-~~-~~~------~~~k~~~k~~dl~in~i~~D~  205 (301)
T PF06217_consen  149 PPKKRKRPKSPKSPK-P----KKPKKKPSVPNRN----------VN-PP-GSD------QRSKPEKKNQDLVINGINFDE  205 (301)
T ss_pred             CCCCCCCCCCCCCCC-C----CCCCCCCCCchhh----------cc-cc-ccc------cccccccccccccccceeecc
Confidence            555444333221111 1    1233333333221          00 00 110      246889999999999999999


Q ss_pred             CCCCCccccccCCCccceeccCCcccccccccccccccCCCCCCCCCccccccccchHHHHHHHHHHhhcccCCCCCccc
Q 019800          240 STMPPPACSCTGVLRQCYKWGNGGWQSACCTTSLSMYPLPAVPNKRHARVGGRKMSGSAFNKLLTRLAAEGHDLSHPVDL  319 (335)
Q Consensus       240 s~~p~p~csctg~~~~cy~wg~ggwqs~cctt~~s~yplp~~~~~~~~r~~grkms~~~f~k~l~~l~~eg~~~~~p~dl  319 (335)
                      |+||+|||||||+|||||||||||||||||||+||||||||+||||||||||||||+|||+|||+|||+||||||+||||
T Consensus       206 s~mP~PvCSCTG~pqqCYrWG~GGWQSaCCTT~iSmYPLPm~~nkRgaRi~GRKMS~gAF~KlL~rLAaEGydls~PiDL  285 (301)
T PF06217_consen  206 STMPIPVCSCTGVPQQCYRWGNGGWQSACCTTTISMYPLPMSPNKRGARIGGRKMSGGAFKKLLERLAAEGYDLSNPIDL  285 (301)
T ss_pred             CCCCCcccccCCCCccccccCCCccccccccccccccccCCCCCCCccccccccccHHHHHHHHHHHHhcccccCCccch
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhhcCCcceeecC
Q 019800          320 KDHWAKHGTNRYITIK  335 (335)
Q Consensus       320 k~~wa~hgtn~~~ti~  335 (335)
                      |+||||||||||||||
T Consensus       286 K~hWAKHGTNryvTIk  301 (301)
T PF06217_consen  286 KDHWAKHGTNRYVTIK  301 (301)
T ss_pred             HHHHHhcCCcceEecC
Confidence            9999999999999998

It seems likely that the region which defines this family mediates DNA binding. This putative domain contains several conserved cysteines and a histidine suggesting this may be a zinc-binding DNA interaction domain.

>PF06217 GAGA_bind: GAGA binding protein-like family; InterPro: IPR010409 This family includes gbp a protein from Soybean that binds to GAGA element dinucleotide repeat DNA []

Probab=99.85  E-value=1.7e-22  Score=193.13  Aligned_cols=209  Identities=25%  Similarity=0.258  Sum_probs=147.6

Q ss_pred             cccccccccccCCCCcHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHhh
Q 019800           16 QYKAAQGQWLMHHQPSMKQIMTIMAERDAALQERNLATSEKKAAIAERDMAFLQRDTAIAERNNAILE---RDNAIASLQ   92 (335)
Q Consensus        16 ~yk~~~~~w~m~~~~~~~~~~a~i~ERd~AI~ERd~AlaERd~Ai~qRD~AiaqRD~AI~ERD~AI~e---RD~aiaaL~   92 (335)
                      .+|+-.+.=+|.   .|-|.+++++||+.||.|++.|++|||+|++|||.||+|||.||+|||+||+.   +++.++   
T Consensus        19 s~K~hLGLqlMs---~maERDaai~er~~al~ekk~a~aeRDma~~qRD~aiaern~ai~ERd~a~a~l~~~~~~~n---   92 (301)
T PF06217_consen   19 SMKGHLGLQLMS---IMAERDAAIRERNLALSEKKAAFAERDMAYLQRDAAIAERNNAIMERDNAIAALQPRNNNGN---   92 (301)
T ss_pred             cccccccceeec---cccccCcccccccchhccccccccchhhhhhhhhhhhccchhhcccchhhhhhccccCCCcc---
Confidence            467666543443   55588899999999999999999999999999999999999999999999999   776655   


Q ss_pred             hhhccCCCCCCCCCCCCccccCccCCCCCc-ccccccccchhhhhhccccCCCCCCCCCCCcCcCCccc---ccccCCCC
Q 019800           93 YRENSLGGNMSSCPPGCQISRGVKHMHHPQ-QHVHQLHHVSEAAYSREMHTGDALPVSPGASEAAKPRR---YKRAKEPK  168 (335)
Q Consensus        93 ~rensmng~~~~cpp~~g~krg~k~~hH~~-~h~~~~~hisea~~~~~~~~~~aspis~~~~e~~k~KR---~Kr~KesK  168 (335)
                        .+.    +++|....++++.++.+++++ ++.++...+.+.....+.   ++..+.++..+.+++|+   .|.+|..+
T Consensus        93 --~~~----p~~~~~~~~tk~~~~~q~~~~~~~~~~~~~~~~~~~~~~~---~i~~~~~~~~~~~~~k~~~~~~~~k~~k  163 (301)
T PF06217_consen   93 --HHC----PPGCGILPGTKHIHHMQQHHHPQLQPPPYSTREMHNIDAP---PISTAPPESKKSKPPKKRKRPKSPKSPK  163 (301)
T ss_pred             --ccC----CCCCcccCCCccCCCcccccccccCCCCCCcccccccccc---ccccCCcccccCCCCCCCCCCCCCCCCC
Confidence              222    345678888998887666332 222221111121111122   44444444444455444   44455444


Q ss_pred             CCCCCCcCCCCcccccccccccccccccCCCcccccccCCCCCCcccccc-------------cccccccCcccccccee
Q 019800          169 VLSPNKKTAKSPRKVKRENEDLNKVVFGKPSEWKSVQDLDGGDDDVNKQS-------------TASKSDWKGQVLGLNQV  235 (335)
Q Consensus       169 ~~~~~kK~kK~~~k~kk~geDlnr~l~~~k~eWk~~Qdl~~G~n~v~~~~-------------~~~~~~~~~~~~~~~~~  235 (335)
                      +.++.+++++..++++..+.+.     ..+.+||+ |||  ++|+|+|++             ..+++.|.+..+.-.+.
T Consensus       164 ~~k~kk~~~~~~~~~~~~~~~~-----~~k~~~k~-~dl--~in~i~~D~s~mP~PvCSCTG~pqqCYrWG~GGWQSaCC  235 (301)
T PF06217_consen  164 PKKPKKKPSVPNRNVNPPGSDQ-----RSKPEKKN-QDL--VINGINFDESTMPIPVCSCTGVPQQCYRWGNGGWQSACC  235 (301)
T ss_pred             CCCCCCCCCCchhhcccccccc-----cccccccc-ccc--cccceeeccCCCCCcccccCCCCccccccCCCccccccc
Confidence            4444444455556677666552     37899999 888  799999998             56789999999999999


Q ss_pred             eeeCCCCCCccc
Q 019800          236 TFDESTMPPPAC  247 (335)
Q Consensus       236 ~~d~s~~p~p~c  247 (335)
                      +--+|..|.|+=
T Consensus       236 TT~iSmYPLPm~  247 (301)
T PF06217_consen  236 TTTISMYPLPMS  247 (301)
T ss_pred             cccccccccCCC
Confidence            999999999973

It seems likely that the region which defines this family mediates DNA binding. This putative domain contains several conserved cysteines and a histidine suggesting this may be a zinc-binding DNA interaction domain.

>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]

Probab=96.61  E-value=0.01  Score=60.46  Aligned_cols=54  Identities=28%  Similarity=0.339  Sum_probs=45.6

Q ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019800           37 TIMAERDAALQERNLATSEKKAAIAERDMAFLQRDTAIAERNNAILERDNAIAS   90 (335)
Q Consensus        37 a~i~ERd~AI~ERd~AlaERd~Ai~qRD~AiaqRD~AI~ERD~AI~eRD~aiaa   90 (335)
                      --++-|..|++.|++.++.|.+|.++++.+|.+||+-|..+|.+|++||+.|..
T Consensus       203 ~~la~r~~a~q~r~~ela~r~aa~Qq~~q~i~qrd~~i~q~~q~iaar~e~I~~  256 (499)
T COG4372         203 QNLATRANAAQARTEELARRAAAAQQTAQAIQQRDAQISQKAQQIAARAEQIRE  256 (499)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence            345566778899999999999999999999999999888888888888888763

>PF04094 DUF390: Protein of unknown function (DUF390); InterPro: IPR007228 This domain is found in a family of long proteins that are currently found only in rice

Probab=95.02  E-value=0.073  Score=57.67  Aligned_cols=42  Identities=33%  Similarity=0.451  Sum_probs=18.3

Q ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019800           42 RDAALQERNLATSEKKAAIAERDMAFLQRDTAIAERNNAILE   83 (335)
Q Consensus        42 Rd~AI~ERd~AlaERd~Ai~qRD~AiaqRD~AI~ERD~AI~e   83 (335)
                      |+.++.+|+.-|+..+++.++++.++..|+.|++|||.++.+
T Consensus       535 Re~a~a~Re~TLAahEaa~AE~E~aLRLREeA~aER~~~~~~  576 (828)
T PF04094_consen  535 RERAAAQREATLAAHEAAAAEEESALRLREEALAERDRALNR  576 (828)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence            333333333333333444444444444444444554444444

They have no known function. However they may be some kind of transposable element. There is a putative gypsy type transposon domain (IPR007321 from INTERPRO) towards the N terminus of the proteins.

>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]

Probab=94.97  E-value=0.11  Score=53.29  Aligned_cols=56  Identities=27%  Similarity=0.354  Sum_probs=44.5

Q ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019800           35 IMTIMAERDAALQERNLATSEKKAAIAERDMAFLQRDTAIAERNNAILERDNAIAS   90 (335)
Q Consensus        35 ~~a~i~ERd~AI~ERd~AlaERd~Ai~qRD~AiaqRD~AI~ERD~AI~eRD~aiaa   90 (335)
                      ...+++-|+..+.-|..|...++.+|.+||.-|.++|.+|+.|++.|.+|+.-+.-
T Consensus       208 r~~a~q~r~~ela~r~aa~Qq~~q~i~qrd~~i~q~~q~iaar~e~I~~re~~lq~  263 (499)
T COG4372         208 RANAAQARTEELARRAAAAQQTAQAIQQRDAQISQKAQQIAARAEQIRERERQLQR  263 (499)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence            45778888888888888888888888888888888888888888888887665443

>PF04094 DUF390: Protein of unknown function (DUF390); InterPro: IPR007228 This domain is found in a family of long proteins that are currently found only in rice

Probab=94.10  E-value=0.2  Score=54.46  Aligned_cols=30  Identities=30%  Similarity=0.484  Sum_probs=16.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019800           60 IAERDMAFLQRDTAIAERNNAILERDNAIA   89 (335)
Q Consensus        60 i~qRD~AiaqRD~AI~ERD~AI~eRD~aia   89 (335)
                      ++-.+.+.++++.+|..|+.|++|||.+++
T Consensus       546 LAahEaa~AE~E~aLRLREeA~aER~~~~~  575 (828)
T PF04094_consen  546 LAAHEAAAAEEESALRLREEALAERDRALN  575 (828)
T ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence            333334445555566666666666666654

They have no known function. However they may be some kind of transposable element. There is a putative gypsy type transposon domain (IPR007321 from INTERPRO) towards the N terminus of the proteins.

>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF

Probab=85.01  E-value=5.9  Score=41.36  Aligned_cols=23  Identities=35%  Similarity=0.416  Sum_probs=16.6

Q ss_pred             CccccccccchHHHHHHHHHHhh
Q 019800          286 HARVGGRKMSGSAFNKLLTRLAA  308 (335)
Q Consensus       286 ~~r~~grkms~~~f~k~l~~l~~  308 (335)
                      .+|-|-|.+|...|-+.|..|..
T Consensus       422 a~rpgar~e~~~~~~~rl~~le~  444 (514)
T TIGR03319       422 AARPGARRESLENYIKRLEKLEE  444 (514)
T ss_pred             CCCCCCcccCHHHHHHHHHHHHH
Confidence            34666777888888888777754

>PRK12704 phosphodiesterase; Provisional

Probab=84.56  E-value=6.4  Score=41.15  Aligned_cols=21  Identities=29%  Similarity=0.419  Sum_probs=15.1

Q ss_pred             cccccccchHHHHHHHHHHhh
Q 019800          288 RVGGRKMSGSAFNKLLTRLAA  308 (335)
Q Consensus       288 r~~grkms~~~f~k~l~~l~~  308 (335)
                      |.|-|..|-..|-+.|.+|-.
T Consensus       430 Rpgar~~~~e~~i~rl~~le~  450 (520)
T PRK12704        430 RPGARRETLENYIKRLEKLEE  450 (520)
T ss_pred             CCCCccccHHHHHHHHHHHHH
Confidence            446666888888888887743

>PRK12704 phosphodiesterase; Provisional

Probab=83.43  E-value=7.8  Score=40.53  Aligned_cols=38  Identities=8%  Similarity=0.261  Sum_probs=14.3

Q ss_pred             HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019800           46 LQERNLATSEKKAAIAERDMAFLQRDTAIAERNNAILE   83 (335)
Q Consensus        46 I~ERd~AlaERd~Ai~qRD~AiaqRD~AI~ERD~AI~e   83 (335)
                      |.+|...|..|...|.+|+..|.+|...|.+|...+.+
T Consensus        91 L~~Ree~Le~r~e~Lekke~eL~~re~~Le~re~eLe~  128 (520)
T PRK12704         91 LLQKEENLDRKLELLEKREEELEKKEKELEQKQQELEK  128 (520)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333333333333333333333333333333333333

>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF

Probab=81.18  E-value=11  Score=39.53  Aligned_cols=39  Identities=10%  Similarity=0.290  Sum_probs=15.5

Q ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019800           45 ALQERNLATSEKKAAIAERDMAFLQRDTAIAERNNAILE   83 (335)
Q Consensus        45 AI~ERd~AlaERd~Ai~qRD~AiaqRD~AI~ERD~AI~e   83 (335)
                      .|.+|...|..|...|.+|+..|.++...|.+|...+.+
T Consensus        84 rL~qRee~Lekr~e~Lekre~~Le~ke~~L~~re~eLee  122 (514)
T TIGR03319        84 RLLQREETLDRKMESLDKKEENLEKKEKELSNKEKNLDE  122 (514)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333333333333334444444444444444444443333

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	335
3nmd_A	72	CGMP dependent protein kinase; leucine zipper, coi	89.34
3nmd_A	72	CGMP dependent protein kinase; leucine zipper, coi	86.46

>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}

Probab=89.34  E-value=0.92  Score=35.45  Aligned_cols=38  Identities=18%  Similarity=0.275  Sum_probs=17.8

Q ss_pred             HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019800           46 LQERNLATSEKKAAIAERDMAFLQRDTAIAERNNAILE   83 (335)
Q Consensus        46 I~ERd~AlaERd~Ai~qRD~AiaqRD~AI~ERD~AI~e   83 (335)
                      |.|-..+|.+|++.|.+||.-|.+.+..|.|+|..|.+
T Consensus        21 i~eLq~~L~~K~eELr~kd~~I~eLEk~L~ekd~eI~~   58 (72)
T 3nmd_A           21 LRDLQYALQEKIEELRQRDALIDELELELDQKDELIQM   58 (72)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33334444444444444444444555555555554444

>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}

Probab=86.46  E-value=1.9  Score=33.64  Aligned_cols=42  Identities=26%  Similarity=0.298  Sum_probs=24.2

Q ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019800           39 MAERDAALQERNLATSEKKAAIAERDMAFLQRDTAIAERNNA   80 (335)
Q Consensus        39 i~ERd~AI~ERd~AlaERd~Ai~qRD~AiaqRD~AI~ERD~A   80 (335)
                      |.|=+.+|.+|++.|.+||.-|.+.+..|.++|..|.+=...
T Consensus        21 i~eLq~~L~~K~eELr~kd~~I~eLEk~L~ekd~eI~~Lqse   62 (72)
T 3nmd_A           21 LRDLQYALQEKIEELRQRDALIDELELELDQKDELIQMLQNE   62 (72)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            455555555555566666666666666666666666554443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00