Citrus Sinensis ID: 019802

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-----
Protein Sequence
MARTKTAATAPSGASAKTSRNGRLSNAERSAYFARREAAKVLRLVLRGDARRRAVGSIKSLVYSPSVKNKKATYALVCQTLKHLSIIKQVLDSASILNSKWKRQEELVYILTYDILFGQEISLVGDAEKFLMLHKGAIQLALAQLLVRNKVKSIEDLMALYQTPDVPKPRYVRVNTLKMDVDSAVLELGKQFVVQKDDLVPDLLILPPGCDLHVHPLIVNGCVFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVSLIFCIFTWMIIMFHGFYVNQ
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccHHHHHHHcccHHHHHHHHHHHHccccccccccHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHccHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHcccccccccEEEEccccccHHHHHHHHHHccccccccccccEEEEcccccccccccccccEEEEEccccccHHHHHccccccEEEEEccccccHHHHHHHHcccccEEEEEcccHHHHHHHHHHHHHHcccEEEEEcccccccccccccccccEEEEcccccEEEccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHccccHHHHccHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHccccccEEEEEccccccHHHHHHHHHHccccccccccccEEEEcccccccccHHHHcccEEEEccccccHHHHcccccccEEEEEccccccHHHHHHHHHccccEEEEEcccHHHHHHHHHHHHHHcccEEEEEEccccccccccccccEEEEEEEccccEEEEEccEEEcc
Coil and Loop (DISEMBL)
martktaatapsgasaktsrngrlsnAERSAYFARREAAKVLRLVLRGDARRRAVGSIKslvyspsvknkkATYALVCQTLKHLSIIKQVLDSASILNSKWKRQEELVYILTYDILFGQEISLVGDAEKFLMLHKGAIQLALAQLLVRNKVKSIEDLMALyqtpdvpkpryvrvntLKMDVDSAVLELGKQFvvqkddlvpdllilppgcdlhvhplivngCVFLQGKASSMVAAalapkpgwkvldacsapgnkTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIevlhgdflnldpkdpayseVSLIFCIFTWMIIMFHGFYVNQ
Flexible Loop (DISEMBL)
martktaatapsgasaktsrngrlsnAERSAYFARREAAKVLRlvlrgdarrravgsikslvyspsvknkKATYALVCQTLKHLSIIKQVLDSASILNSKWKRQEELVYILTYDILFGQEISLVGDAEKFLMLHKGAIQLALAQLLVRNKVKSIEDLMalyqtpdvpkpryVRVNTLKMDVDSAVLELGKQFVVQKDDLVPDLLILPPGCDLHVHPLIVNGCVFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVSLIFCIFTWMIIMFHGFYVNQ
Low Complexity Region (SEG)
MARTKTAATAPSGASAKTSRNGRLSNAERSAYFARREAAKVLRLVLRGDARRRAVGSIKSLVYSPSVKNKKATYALVCQTLKHLSIIKQVLDSASILNSKWKRQEELVYILTYDILFGQEISLVGDAEKFLMLHKGAIQLALAQLLVRNKVKSIEDLMALYQTPDVPKPRYVRVNTLKMDVDSAVLELGKQFVVQKddlvpdllilppGCDLHVHPLIVNGCVFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVSLIFCIFTWMIIMFHGFYVNQ
Disordered region (IsUnstruct)
*******************************YFARREAAKVLRLVLRGDARRRAVGSIKSLVYSPSVKNKKATYALVCQTLKHLSIIKQVLDSASILNSKWKRQEELVYILTYDILFGQEISLVGDAEKFLMLHKGAIQLALAQLLVRNKVKSIEDLMALYQTPDVPKPRYVRVNTLKMDVDSAVLELGKQFVVQKDDLVPDLLILPPGCDLHVHPLIVNGCVFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVSLIFCIFTWMIIMFHGFYV**
Disordered Region (DISOPRED)
*********************************ARREAAKVLRLVLRGDARRRAVGSIKSLVYSPSVKNKKATYALVCQTLKHLSIIKQVLDSASILNSKWKRQEELVYILTYDILFGQEISLVGDAEKFLMLHKGAIQLALAQLLVRNKVKSIEDLMALYQTPDVPKPRYVRVNTLKMDVDSAVLELGKQFVVQKDDLVPDLLILPPGCDLHVHPLIVNGCVFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVSLIFCIFTWMIIMF**F****
Disordered Region (DISEMBL)
***************************ERSAYFARREAAKVLRLVLRGDARRRAVGSIKSLVYSPSVKNKKATYALVCQTLKHLSIIKQVLDSASILNSKWKRQEELVYILTYDILFGQEISLVGDAEKFLMLHKGAIQLALAQLLVRNKVKSIEDLMALYQTPDVPKPRYVRVNTLKMDVDSAVLELGKQFVVQKDDLVPDLLILPPGCDLHVHPLIVNGCVFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVSLIFCIFTWMIIMFHGFYVNQ
Disordered Region (DISPRO)
***************************ERSAYFARREAAKVLRLVLRGDARRRAVGSIKSLVYSPSVKNKKATYALVCQTLKHLSIIKQVLDSASILNSKWKRQEELVYILTYDILFGQEISLVGDAEKFLMLHKGAIQLALAQLLVRNKVKSIEDLMALYQTPDVPKPRYVRVNTLKMDVDSAVLELGKQFVVQKDDLVPDLLILPPGCDLHVHPLIVNGCVFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVSLIFCIFTWMIIMFHGFYVNQ
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHii
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MARTKTAATAPSGASAKTSRNGRLSNAERSAYFARREAAKVLRLVLRGDARRRAVGSIKSLVYSPSVKNKKATYALVCQTLKHLSIIKQVLDSASILNSKWKRQEELVYILTYDILFGQEISLVGDAEKFLMLHKGAIQLALAQLLVRNKVKSIEDLMALYQTPDVPKPRYVRVNTLKMDVDSAVLELGKQFVVQKDDLVPDLLILPPGCDLHVHPLIVNGCVFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVSLIFCIFTWMIIMFHGFYVNQ
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	335	2.2.26 [Sep-21-2011]
Q96P11	429	Putative methyltransferas	yes	no	0.779	0.608	0.379	5e-41
Q8K4F6	465	Putative methyltransferas	yes	no	0.785	0.565	0.357	4e-35
O14039	460	Putative methyltransferas	yes	no	0.764	0.556	0.35	4e-28
P53972	490	Uncharacterized protein Y	yes	no	0.802	0.548	0.262	4e-18
P94464	447	Ribosomal RNA small subun	yes	no	0.4	0.299	0.338	3e-14
Q63ZY6	315	Putative methyltransferas	no	no	0.355	0.377	0.361	1e-12
Q60343	274	tRNA (cytosine(48)-C(5))-	yes	no	0.397	0.485	0.343	4e-11
Q7TS68	476	Putative methyltransferas	no	no	0.256	0.180	0.426	8e-11
Q8EKR0	428	Ribosomal RNA small subun	no	no	0.423	0.331	0.319	1e-10
O94268	608	Putative ribosomal RNA me	no	no	0.429	0.236	0.296	2e-10

>sp|Q96P11|NSUN5_HUMAN Putative methyltransferase NSUN5 OS=Homo sapiens GN=NSUN5 PE=1 SV=2

 Score =  168 bits (426), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 109/287 (37%), Positives = 156/287 (54%), Gaps = 26/287 (9%)

Query: 56  GSIKSLVYSPSVKNKKATYALVCQTLKHLSIIKQVLDSASILNSKWKRQEELVYILTYDI 115
           GSIK LVYS + +N K  YALVC+T ++ +++  V+ SA +L ++ K +  L  +L Y++
Sbjct: 19  GSIKGLVYSSNFQNVKQLYALVCETQRYSAVLDAVIASAGLLRAEKKLRPHLAKVLVYEL 78

Query: 116 LFGQEISLVGDAEKFLM-LHKGAIQLALAQLLVRNKVKSIEDLMALYQTPDVPK--PRYV 172
           L G+     G   K L+  H+  ++  LA+L V   V   EDL+ +   P      PR+V
Sbjct: 79  LLGKGFRGGGGRWKALLGRHQARLKAELARLKVHRGVSRNEDLLEVGSRPGPASQLPRFV 138

Query: 173 RVNTLKMDVDSAVLEL---------------------GKQFVVQKDDLVPDLLILPPGCD 211
           RVNTLK   D  V                        GK F++  D L+P+LL+ P   D
Sbjct: 139 RVNTLKTCSDDVVDYFKRQGFSYQGRASSLDDLRALKGKHFLL--DPLMPELLVFPAQTD 196

Query: 212 LHVHPLIVNGCVFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVA 271
           LH HPL   G + LQ +AS + A  L P PG  V+DAC+APGNKT HLAAL+K +GKI A
Sbjct: 197 LHEHPLYRAGHLILQDRASCLPAMLLDPPPGSHVIDACAAPGNKTSHLAALLKNQGKIFA 256

Query: 272 CELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVSLIF 318
            +L+ +R+  +   +  +G +  E+   DFL + P DP Y EV  I 
Sbjct: 257 FDLDAKRLASMATLLARAGVSCCELAEEDFLAVSPSDPRYHEVHYIL 303

May have S-adenosyl-L-methionine-dependent methyl-transferase activity.
Homo sapiens (taxid: 9606)
EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: -

>sp|Q8K4F6|NSUN5_MOUSE Putative methyltransferase NSUN5 OS=Mus musculus GN=Nsun5 PE=2 SV=2

 Score =  148 bits (374), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 102/285 (35%), Positives = 153/285 (53%), Gaps = 22/285 (7%)

Query: 56  GSIKSLVYSPSVKNKKATYALVCQTLKHLSIIKQVLDSASILNSKWKRQEELVYILTYDI 115
           GS+K LVYS + +N K  YALVC+T ++ +++  V+ SA +L ++ K +  L  +L Y++
Sbjct: 19  GSLKGLVYSSNFQNLKQLYALVCETQRYSAVLDAVIASAGLLRAEKKLRPHLAKVLVYEL 78

Query: 116 LFGQEISLVGDAEKFLM-LHKGAIQLALAQLLVRNKVKSIEDLMALYQTPDVPK--PRYV 172
           L G+     G   K L+  H+  ++  LA+L V   V   EDL+     P      PR+V
Sbjct: 79  LLGKGFRGGGGRWKALLGRHQARLKAELARLKVHRGVSRNEDLLQESSRPGQAYQVPRFV 138

Query: 173 RVNTLKMDVDSAVLELGKQ-FVVQ-KDDLVPDL-----------------LILPPGCDLH 213
           RVNTLK   + A+    +Q F  Q +   + DL                 L+ P   DLH
Sbjct: 139 RVNTLKTRPEDAIDYFKRQGFSYQGRASSLEDLRALKGQHFLLDPLLPELLVFPAQTDLH 198

Query: 214 VHPLIVNGCVFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACE 273
            HPL   G + LQ KAS + A  L+P PG  V+DAC+APGNKT ++AAL+K +GKI A +
Sbjct: 199 EHPLYRAGHLILQDKASCLPAMLLSPPPGSHVIDACAAPGNKTSYIAALLKNQGKIFAFD 258

Query: 274 LNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVSLIF 318
            + +R+  +   +  +G +  E+   DFL + P D  YS+V  I 
Sbjct: 259 QDAKRLAAMATLVARAGVSCCELAEKDFLTVSPSDQRYSQVQYIL 303

May have S-adenosyl-L-methionine-dependent methyl-transferase activity.

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|O14039|YEY6_SCHPO Putative methyltransferase C2C4.06c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC2C4.06c PE=3 SV=3

 Score =  125 bits (314), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 98/280 (35%), Positives = 151/280 (53%), Gaps = 24/280 (8%)

Query: 56  GSIKSLVYSPSVKNKKATYALVCQTLKHLSIIKQVLDSASILNSKWKRQEELVYILTYDI 115
           GSIK L ++    + K TYALVC+TLK+  ++ +++  + +L  + K +E L  +L +D+
Sbjct: 19  GSIKQLAFNSKKHDPKRTYALVCETLKYKPVLDEIIARSELLVLEKKLKENLARVLVHDL 78

Query: 116 LF---GQEISLVGDAEKFLMLHKGAIQLALAQLLVRNKVKSIEDLMALYQTPDVPKPRYV 172
           L    G  IS  G  ++ ++ HK  +     +L V+  VKS E+L    + P V  PR++
Sbjct: 79  LMSKRGLSIS-NGPIKECILRHKTRLNAEFVKLKVKKGVKSHEELA--LKNP-VSLPRWL 134

Query: 173 RVNTLK-----------MDVDSAVLELG-KQFVVQKDDLVPDLLILPPGCDLHVHPLIVN 220
           R+NT+K           +D  S++ ELG  +F +  DD V +L+ + P   +  + L   
Sbjct: 135 RINTIKSTKDEVLQGLGLDKVSSIEELGPDKFYI--DDCVENLIAIDPSFPIVENSLYKE 192

Query: 221 GCVFLQGKASSMVAAALAPKPGW--KVLDACSAPGNKTVHLAALMKGKGKIVACELNKER 278
           G V +Q KAS   AA LA   G    ++D C+APGNKT HLAA    K  I A E + +R
Sbjct: 193 GKVIIQDKASCFPAAVLAGLTGHVGDIIDGCAAPGNKTTHLAACFP-KSHIFAFERDAKR 251

Query: 279 VRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVSLIF 318
           V+ L+  + +SGA N+ + H DF   DPK   Y  V+ I 
Sbjct: 252 VQTLRKMVGISGANNVTIEHQDFTLTDPKSDLYRNVTHIL 291

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|P53972|YNC2_YEAST Uncharacterized protein YNL022C OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YNL022C PE=1 SV=1

 Score = 92.4 bits (228), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 81/308 (26%), Positives = 149/308 (48%), Gaps = 39/308 (12%)

Query: 36  REAAKVLRLVLRGDARRRAVGSIKSLVYSPSVK-----NKKATYALVCQTLKHLSIIKQV 90
           R+A  VL  + +  A+ R  GS+++LV     +     N K  YA++    K+   +++V
Sbjct: 5   RDATWVLEDIEKEAAKERISGSMQTLVLKSCKRYKLKSNPKHIYAVLDSCWKYKPYLEKV 64

Query: 91  LDSASILNSKWKRQEELVY-------ILTYDILFGQEISLVGDA--EKFLMLHKGAIQLA 141
           +  A IL    K++ + ++       +    +L  Q+   +G    + +++  K  +   
Sbjct: 65  MKKAHILEDIPKKKGKPLFSRLTLLLLCHDLLLSKQKRIQMGKHPIKDYVLKFKSPLHSE 124

Query: 142 LAQLLVRNKVKSIEDLMALYQ-TPDVPKPRYVRVNTLKM----DVDSAVLELGKQFVVQ- 195
           + +L ++ KV+ + +L+     + D+P  R++R+N LK     + +  + EL K+F ++ 
Sbjct: 125 MVKLKLKLKVRELSELVLSEDISNDLPPVRWIRINPLKCHPNGETEPVLAELRKKFTLKV 184

Query: 196 ------------KDDLVPDLLILPPGCDLHVHPLIVNGCVFLQGKASSMVAAALAPKPGW 243
                        D+ +P+L  + P   +  H L  +G + +Q +AS   A  L P P  
Sbjct: 185 DKWSELVPGSIYYDEFIPNLFGIHPSDKITAHELYKHGKIIIQDRASCFPAHILNPGPSD 244

Query: 244 KVLDACSAPGNKTVHLAALM------KGKGKIVACELNKERVRRLKDTIKLSGAA-NIEV 296
            V+D+CSAPGNKT H A+ +          +I A E + ER + L+  IK++G + NI V
Sbjct: 245 IVIDSCSAPGNKTTHTASYIYPEPPKDNNTRIYAFEKDPERAKVLQKMIKIAGCSPNISV 304

Query: 297 LHGDFLNL 304
             GDF  L
Sbjct: 305 NVGDFTKL 312

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|P94464|RSMB_BACSU Ribosomal RNA small subunit methyltransferase B OS=Bacillus subtilis (strain 168) GN=rsmB PE=3 SV=2

 Score = 79.7 bits (195), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 47/139 (33%), Positives = 79/139 (56%), Gaps = 5/139 (3%)

Query: 166 VPKPRYVRVNTLKMDVDSAVLELGKQFV-VQKDDLVPDLLILPPGCDLHVHPLIVNGCVF 224
           +P  + +RVN +K D    + ++  + + V+K DL  D + L  G     H    NG V 
Sbjct: 176 IPPKQTLRVNQMKADRAELLDQMAAEGIEVEKGDLAEDAVKLLKGTIAGTH-FFQNGEVS 234

Query: 225 LQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKD 284
           +Q ++S +VA AL PK    VLDAC+APG K+ H+A LMK KG + + +L+K +V+ +K+
Sbjct: 235 IQDESSMLVARALDPKSDETVLDACAAPGGKSAHIAELMKNKGSVTSLDLHKHKVKLIKE 294

Query: 285 TIKLSGAANIEVLHGDFLN 303
                G   + ++H + ++
Sbjct: 295 AADRLG---LTIIHAETMD 310

Bacillus subtilis (strain 168) (taxid: 224308)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|Q63ZY6|NSN5C_HUMAN Putative methyltransferase NSUN5C OS=Homo sapiens GN=NSUN5P2 PE=5 SV=2

 Score = 74.3 bits (181), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 43/119 (36%), Positives = 62/119 (52%)

Query: 200 VPDLLILPPGCDLHVHPLIVNGCVFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHL 259
           +P+LL+ P   DLH HPL   G + LQ +AS + A  L P+              KT HL
Sbjct: 1   MPELLVFPAQTDLHEHPLYRAGHLILQDRASCLPAMLLDPRQAPMSWMPVPPQAIKTSHL 60

Query: 260 AALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVSLIF 318
           AAL+K +GKI A +L+  R+  +   +  +G +  E+   DFL + P DP Y EV  + 
Sbjct: 61  AALLKNQGKIFAFDLDARRLASMATLLAWAGVSCCELAEEDFLAVSPLDPRYREVHYVL 119

May have S-adenosyl-L-methionine-dependent methyl-transferase activity.

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|Q60343|TRM4_METJA tRNA (cytosine(48)-C(5))-methyltransferase OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) GN=trm4 PE=1 SV=1

 Score = 69.3 bits (168), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 46/134 (34%), Positives = 68/134 (50%), Gaps = 1/134 (0%)

Query: 168 KPRYVRVNTLKMDVDSAVLEL-GKQFVVQKDDLVPDLLILPPGCDLHVHPLIVNGCVFLQ 226
           K +++RVNTLK++ +     L  K  V++K  L     +      +   P  + G    Q
Sbjct: 9   KMQFIRVNTLKINPEVLKKRLENKGVVLEKTFLDYAFEVKKSPFSIGSTPEYLFGYYMPQ 68

Query: 227 GKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTI 286
             +S +    L P+    +LD C+APG KT HLA LMK KG IVA E++K R + LK  I
Sbjct: 69  SISSMIPPIVLNPREDDFILDMCAAPGGKTTHLAQLMKNKGTIVAVEISKTRTKALKSNI 128

Query: 287 KLSGAANIEVLHGD 300
              G  N  +++ D
Sbjct: 129 NRMGVLNTIIINAD 142

Catalyzes AdoMet-dependent formation of m5C in tRNA. Cytidine residue at either position 40 or position 48 is likely to be methylated.

Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) (taxid: 243232)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|Q7TS68|NSUN6_MOUSE Putative methyltransferase NSUN6 OS=Mus musculus GN=Nsun6 PE=2 SV=2

 Score = 68.2 bits (165), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 38/89 (42%), Positives = 52/89 (58%), Gaps = 3/89 (3%)

Query: 223 VFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRL 282
           +FLQ   S++VA  L P+PG K+LD C+APG KT H AALM+ KG+++A +    +V +L
Sbjct: 216 IFLQNLPSTVVAHVLDPQPGEKILDMCAAPGGKTTHTAALMQDKGEVIALDKILTKVNKL 275

Query: 283 KDTIKLSGAANIEVLHGD---FLNLDPKD 308
           K    L G  +I     D    L LD  D
Sbjct: 276 KQNASLLGLHSIRAFCFDATKALKLDTTD 304

May have S-adenosyl-L-methionine-dependent methyl-transferase activity.

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|Q8EKR0|RSMB_SHEON Ribosomal RNA small subunit methyltransferase B OS=Shewanella oneidensis (strain MR-1) GN=rsmB PE=3 SV=1

 Score = 67.4 bits (163), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 47/147 (31%), Positives = 77/147 (52%), Gaps = 5/147 (3%)

Query: 160 LYQTPDVPKPRYVRVNTLKMDVDSAVLELGKQFVVQKDDLVPDLLILPPGCDLHVHPLIV 219
           + Q+ + P P ++R N L    D  +  L K  +     L  D ++L    D+   PL +
Sbjct: 160 IQQSHERP-PMWLRNNRLSQSRDEYLAALDKLEIDASAGLSDDAILLAAPKDVATLPLFL 218

Query: 220 NGCVFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERV 279
            G   +Q  A+   A  LAP+    +LDAC+APG K+ HL  L +   K++A + + +R+
Sbjct: 219 EGAASVQDGAAQWAATLLAPQANELILDACAAPGGKSCHLLEL-EPSIKLIAVDFDAKRL 277

Query: 280 RRLKDTI-KLSGAANIEVLHGDFLNLD 305
            R++  + +LS  A  EV+HGD  N+D
Sbjct: 278 ERVQQNLDRLSLKA--EVIHGDAANID 302

Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA.

Shewanella oneidensis (strain MR-1) (taxid: 211586)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 7

EC: 6

>sp|O94268|NOP2_SCHPO Putative ribosomal RNA methyltransferase nop2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBP8B7.20c PE=1 SV=1

 Score = 67.0 bits (162), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 46/155 (29%), Positives = 73/155 (47%), Gaps = 11/155 (7%)

Query: 153 SIEDLMALYQTPDVPKPRYVRVNTLKMDVDSAVLELGKQFVVQKDDLVP-------DLLI 205
           S+ + +  ++  ++P+P  +R NTLK    +   EL +  + +  +L P        L +
Sbjct: 248 SVSEAVEFFEANEMPRPVTIRTNTLK----TQRRELAQALINRGVNLEPIGKWSKVGLQV 303

Query: 206 LPPGCDLHVHPLIVNGCVFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKG 265
                 +   P  + G   LQ  +S +   ALAP+P  ++LD  SAPG K  ++AAL K 
Sbjct: 304 FESQVPIGATPEYLAGHYILQAASSFLPVMALAPQPNERILDMSSAPGGKVTYVAALQKN 363

Query: 266 KGKIVACELNKERVRRLKDTIKLSGAANIEVLHGD 300
            G I A + NK R + L   I   G  N  V + D
Sbjct: 364 TGIIFANDSNKARTKALSANIHRLGVRNAIVCNYD 398

Required for 60S ribosomal subunit synthesis. May act as ribosomal RNA methyltransferase.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	335
343887284	534	NOL1/NOP2/sun family protein [Citrus uns	0.949	0.595	0.889	1e-174
359476259	508	PREDICTED: putative methyltransferase NS	0.943	0.622	0.773	1e-141
296081680	626	unnamed protein product [Vitis vinifera]	0.943	0.504	0.773	1e-140
224092121	433	predicted protein [Populus trichocarpa]	0.913	0.706	0.731	1e-127
255550109	497	williams-beuren syndrome critical region	0.916	0.617	0.676	1e-120
449447153	509	PREDICTED: putative methyltransferase NS	0.949	0.624	0.645	1e-119
356507034	494	PREDICTED: putative methyltransferase NS	0.883	0.599	0.709	1e-117
297808641	514	predicted protein [Arabidopsis lyrata su	0.949	0.618	0.646	1e-117
30690149	567	NOL1/NOP2/sun family protein [Arabidopsi	0.913	0.539	0.657	1e-114
356514695	502	PREDICTED: putative methyltransferase NS	0.883	0.589	0.691	1e-114

>gi|343887284|dbj|BAK61830.1| NOL1/NOP2/sun family protein [Citrus unshiu]

 Score =  618 bits (1594), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 314/353 (88%), Positives = 315/353 (89%), Gaps = 35/353 (9%)

Query: 1   MARTKTAATAPSGASAKTSRNGRLSNAERSAYFARREAAKVLRLVLRGDARRRAVGSIKS 60
           MARTKTAATAPSGASAKTSRNGRLSNAERSAYFARREAAKVLRLVLRGDARRRAVGSIKS
Sbjct: 1   MARTKTAATAPSGASAKTSRNGRLSNAERSAYFARREAAKVLRLVLRGDARRRAVGSIKS 60

Query: 61  LVYSPSVKNKKATYALVCQTLKHLSIIKQVLDSASILNSKWKRQEELVYILTYDILFGQE 120
           LVYSPSVKNKKATYALVCQTLKHLSIIKQVLDSASILNSKWKRQEELVYILTYDILFGQE
Sbjct: 61  LVYSPSVKNKKATYALVCQTLKHLSIIKQVLDSASILNSKWKRQEELVYILTYDILFGQE 120

Query: 121 ISLVGDAEKFLMLHKGAIQLALAQLLVRNKVKSIEDLMALYQTPDVPKPRYVRVNTLKMD 180
           ISLVGDAEKFLMLHKGAIQLALAQLLVRNKVKSIEDLMALYQTPDVPKPRYVRVNTLKMD
Sbjct: 121 ISLVGDAEKFLMLHKGAIQLALAQLLVRNKVKSIEDLMALYQTPDVPKPRYVRVNTLKMD 180

Query: 181 VDSAVLELGKQFVVQKDDLVPDLLILPPGCDLHVHPLIVNGCVFLQGKASSMVAAALAPK 240
           VDSAVLELGKQFVVQKDDLVPDLLILPPGCDLHVHPLIVNGCVFLQGKASSMVAAALAPK
Sbjct: 181 VDSAVLELGKQFVVQKDDLVPDLLILPPGCDLHVHPLIVNGCVFLQGKASSMVAAALAPK 240

Query: 241 PGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAA-------- 292
           PGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAA        
Sbjct: 241 PGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAAKFKVLLFV 300

Query: 293 ---------------------------NIEVLHGDFLNLDPKDPAYSEVSLIF 318
                                      +IEVLHGDFLNLDPKDPAYSEV  I 
Sbjct: 301 MMHYLYSMIHAFQLLSILFRNSLNQPEDIEVLHGDFLNLDPKDPAYSEVRAIL 353

Source: Citrus unshiu

Species: Citrus unshiu

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359476259|ref|XP_002279425.2| PREDICTED: putative methyltransferase NSUN5-like [Vitis vinifera]

 Score =  506 bits (1302), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 246/318 (77%), Positives = 281/318 (88%), Gaps = 2/318 (0%)

Query: 1   MARTKTAATAPSGASAKTSRNGRLSNAERSAYFARREAAKVLRLVLRGDARRRAVGSIKS 60
           M  +KTAAT  + + AK  +  RLS A+RS+YFARREAAKVL+ VL+GDA+RRAVGSIKS
Sbjct: 1   MVSSKTAAT--TASRAKKPKEQRLSKADRSSYFARREAAKVLQCVLQGDAKRRAVGSIKS 58

Query: 61  LVYSPSVKNKKATYALVCQTLKHLSIIKQVLDSASILNSKWKRQEELVYILTYDILFGQE 120
           LVYSPSV+NKKAT+ALVCQTLKHLSIIK VLDSA ILN+KWKRQE L+YI+TYDILFGQE
Sbjct: 59  LVYSPSVRNKKATFALVCQTLKHLSIIKDVLDSARILNAKWKRQEGLMYIITYDILFGQE 118

Query: 121 ISLVGDAEKFLMLHKGAIQLALAQLLVRNKVKSIEDLMALYQTPDVPKPRYVRVNTLKMD 180
           IS VGDAEKFL+L K AIQLALA+LLVR KVK +EDLMALYQ PDV KPR+VRVNTLK+D
Sbjct: 119 ISSVGDAEKFLLLQKDAIQLALARLLVRKKVKRVEDLMALYQIPDVSKPRFVRVNTLKLD 178

Query: 181 VDSAVLELGKQFVVQKDDLVPDLLILPPGCDLHVHPLIVNGCVFLQGKASSMVAAALAPK 240
           V+SA  ELGKQ +VQKDD+VPDLLILPPG DLH HPL+ NG VF+QGKASSMVA AL P+
Sbjct: 179 VESAFHELGKQNMVQKDDMVPDLLILPPGSDLHNHPLVRNGSVFMQGKASSMVAVALGPE 238

Query: 241 PGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGD 300
           PGW+VLDACSAPGNKTVHLAALM GKGKI+ACEL+ ERV+RL+DT++LSGAANIEVLHGD
Sbjct: 239 PGWEVLDACSAPGNKTVHLAALMNGKGKIIACELDNERVKRLEDTVRLSGAANIEVLHGD 298

Query: 301 FLNLDPKDPAYSEVSLIF 318
           FLNL+P DP+YS+V  I 
Sbjct: 299 FLNLNPMDPSYSKVRAIL 316

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296081680|emb|CBI20685.3| unnamed protein product [Vitis vinifera]

 Score =  504 bits (1298), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 246/318 (77%), Positives = 281/318 (88%), Gaps = 2/318 (0%)

Query: 1   MARTKTAATAPSGASAKTSRNGRLSNAERSAYFARREAAKVLRLVLRGDARRRAVGSIKS 60
           M  +KTAAT  + + AK  +  RLS A+RS+YFARREAAKVL+ VL+GDA+RRAVGSIKS
Sbjct: 1   MVSSKTAAT--TASRAKKPKEQRLSKADRSSYFARREAAKVLQCVLQGDAKRRAVGSIKS 58

Query: 61  LVYSPSVKNKKATYALVCQTLKHLSIIKQVLDSASILNSKWKRQEELVYILTYDILFGQE 120
           LVYSPSV+NKKAT+ALVCQTLKHLSIIK VLDSA ILN+KWKRQE L+YI+TYDILFGQE
Sbjct: 59  LVYSPSVRNKKATFALVCQTLKHLSIIKDVLDSARILNAKWKRQEGLMYIITYDILFGQE 118

Query: 121 ISLVGDAEKFLMLHKGAIQLALAQLLVRNKVKSIEDLMALYQTPDVPKPRYVRVNTLKMD 180
           IS VGDAEKFL+L K AIQLALA+LLVR KVK +EDLMALYQ PDV KPR+VRVNTLK+D
Sbjct: 119 ISSVGDAEKFLLLQKDAIQLALARLLVRKKVKRVEDLMALYQIPDVSKPRFVRVNTLKLD 178

Query: 181 VDSAVLELGKQFVVQKDDLVPDLLILPPGCDLHVHPLIVNGCVFLQGKASSMVAAALAPK 240
           V+SA  ELGKQ +VQKDD+VPDLLILPPG DLH HPL+ NG VF+QGKASSMVA AL P+
Sbjct: 179 VESAFHELGKQNMVQKDDMVPDLLILPPGSDLHNHPLVRNGSVFMQGKASSMVAVALGPE 238

Query: 241 PGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGD 300
           PGW+VLDACSAPGNKTVHLAALM GKGKI+ACEL+ ERV+RL+DT++LSGAANIEVLHGD
Sbjct: 239 PGWEVLDACSAPGNKTVHLAALMNGKGKIIACELDNERVKRLEDTVRLSGAANIEVLHGD 298

Query: 301 FLNLDPKDPAYSEVSLIF 318
           FLNL+P DP+YS+V  I 
Sbjct: 299 FLNLNPMDPSYSKVRAIL 316

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224092121|ref|XP_002309481.1| predicted protein [Populus trichocarpa] gi|222855457|gb|EEE93004.1| predicted protein [Populus trichocarpa]

 Score =  461 bits (1185), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 226/309 (73%), Positives = 268/309 (86%), Gaps = 3/309 (0%)

Query: 11  PSGASAKTSRNGRLSNAERSAYFARREAAKVLRLVLRGDARRRAVGSIKSLVYSPSVKNK 70
           P   + K+++  RL+NAERSAYFARREAAKVL  VL+GDA+R+AV SIKSLVYSPS++NK
Sbjct: 2   PKQTTDKSAK-PRLNNAERSAYFARREAAKVLHTVLQGDAKRQAVASIKSLVYSPSIRNK 60

Query: 71  KATYALVCQTLKHLSIIKQVLDSASILNSKWKRQEELVYILTYDILFGQEISLVG-DAEK 129
           KAT+ALVCQTLKHL IIK VL+ A+ILNSKWKRQEEL+YI+ YD+LFG+ ISLVG DAEK
Sbjct: 61  KATFALVCQTLKHLRIIKDVLEIANILNSKWKRQEELIYIIAYDVLFGKGISLVGGDAEK 120

Query: 130 FLMLHKGAIQLALAQLLVRNKVKSIEDLMALYQTPDVPKPRYVRVNTLKMDVDSAVLELG 189
           FL   K A+Q ALA+L+VR K K+I+D +ALYQ PD+ KP YVRVNTLK+DVDSA+ ELG
Sbjct: 121 FLACRKDAMQSALAKLVVRKKAKNIDDFIALYQPPDITKPCYVRVNTLKLDVDSALHELG 180

Query: 190 KQFVVQKDDLVPDLLILPPGCDLHVHPLIVNGCVFLQGKASSMVAAALAPKPGWKVLDAC 249
           KQF VQKDD++P LL+LPP  DLH H L++NG +F+QGKASSMVAA L PKPGW+VLDAC
Sbjct: 181 KQFKVQKDDMIPHLLVLPPHTDLHNHSLVLNGSIFVQGKASSMVAAVLDPKPGWEVLDAC 240

Query: 250 SAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDP 309
           SAPGNKTVHLAALMKGKGKI+ACELNK+R +RL+DTI+LSGAANIEVLHGDFLN+DPK P
Sbjct: 241 SAPGNKTVHLAALMKGKGKIIACELNKDRAKRLEDTIRLSGAANIEVLHGDFLNIDPKGP 300

Query: 310 AYSEVSLIF 318
            +S+VS I 
Sbjct: 301 -FSKVSAIL 308

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255550109|ref|XP_002516105.1| williams-beuren syndrome critical region protein, putative [Ricinus communis] gi|223544591|gb|EEF46107.1| williams-beuren syndrome critical region protein, putative [Ricinus communis]

 Score =  436 bits (1122), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 209/309 (67%), Positives = 261/309 (84%), Gaps = 2/309 (0%)

Query: 11  PSGASAKTSRNGRLSNAERSAYFARREAAKVLRLVLRGDARRRAVGSIKSLVYSPSVKNK 70
           PSGA+ K S   +L+  ERS ++ARREAA VL+ VL+G A+RRA GSIKSLVYSPSV+NK
Sbjct: 13  PSGAAGK-SETRQLTRPERSGFYARREAANVLKRVLQGHAQRRATGSIKSLVYSPSVRNK 71

Query: 71  KATYALVCQTLKHLSIIKQVLDSASILNSKWKRQEELVYILTYDILFGQEISLV-GDAEK 129
           +AT+ALVCQTLKHL +IK VL+SA  LN+  K++EEL+YI+ YDILFGQEI LV GD EK
Sbjct: 72  RATFALVCQTLKHLPVIKDVLESAGALNTHSKKKEELMYIVAYDILFGQEIPLVVGDVEK 131

Query: 130 FLMLHKGAIQLALAQLLVRNKVKSIEDLMALYQTPDVPKPRYVRVNTLKMDVDSAVLELG 189
           FL+  K  +Q ALA++LVR K K+I+DL+ALY+ PDV KP YVRVNTLK DVDSA+LELG
Sbjct: 132 FLLRRKNDLQRALAKVLVRKKAKTIDDLLALYRPPDVSKPCYVRVNTLKSDVDSALLELG 191

Query: 190 KQFVVQKDDLVPDLLILPPGCDLHVHPLIVNGCVFLQGKASSMVAAALAPKPGWKVLDAC 249
           +QF VQKDD+VP+L +LPP  DLH HPL+++G +F+QGKASSMVA AL PKPGW+VLDAC
Sbjct: 192 RQFTVQKDDMVPNLFVLPPNSDLHNHPLVLDGSIFVQGKASSMVAVALDPKPGWEVLDAC 251

Query: 250 SAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDP 309
           SAPGNKTVH+AALM+GKG+I+ACELNK+R++RL+DT++LSGAANIEV H DFLNL+P+D 
Sbjct: 252 SAPGNKTVHVAALMRGKGRIIACELNKDRIKRLEDTVRLSGAANIEVRHCDFLNLNPRDS 311

Query: 310 AYSEVSLIF 318
            +S++  I 
Sbjct: 312 PFSKIRAIL 320

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449447153|ref|XP_004141333.1| PREDICTED: putative methyltransferase NSUN5-like [Cucumis sativus] gi|449529369|ref|XP_004171672.1| PREDICTED: putative methyltransferase NSUN5-like [Cucumis sativus]

 Score =  432 bits (1112), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 206/319 (64%), Positives = 259/319 (81%), Gaps = 1/319 (0%)

Query: 1   MARTKTAATAPSGASAKTSRNGRLSNAERSAYFARREAAKVLRLVLRGDARRRAVGSIKS 60
           M R      A +  +A  S   R+SNA+RSAYFARREAAKVLR VL GDA+RRA+ SIK+
Sbjct: 1   MGRVNNRTKASASGAAGKSEMRRMSNADRSAYFARREAAKVLRRVLEGDAQRRAIASIKT 60

Query: 61  LVYSPSVKNKKATYALVCQTLKHLSIIKQVLDSASILNSKWKRQEELVYILTYDILFGQE 120
           LVY+PSV+NKK T+ALVC+TLK+L +IK V+++A +L++KWKRQ+EL+Y++ YDIL GQ+
Sbjct: 61  LVYAPSVRNKKGTFALVCKTLKYLPVIKDVVEAADLLSNKWKRQKELIYVIMYDILLGQK 120

Query: 121 ISLVGDAEKFLMLHKGAIQLALAQLLVRNKVKSIEDLMALYQT-PDVPKPRYVRVNTLKM 179
             L GDAEKFLM  + A+Q A+ QLL + K  +IEDL+A     P V +PR+VRVNTLKM
Sbjct: 121 THLAGDAEKFLMRQQSALQSAVTQLLSKKKANNIEDLIARGDDGPGVSRPRFVRVNTLKM 180

Query: 180 DVDSAVLELGKQFVVQKDDLVPDLLILPPGCDLHVHPLIVNGCVFLQGKASSMVAAALAP 239
           DV +A+ ELGK++ VQKDD+V DLLILPPG DLH HPL+ +G +FLQGKASSMVA AL P
Sbjct: 181 DVHTAIEELGKRYAVQKDDMVSDLLILPPGSDLHDHPLVADGSIFLQGKASSMVAVALDP 240

Query: 240 KPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHG 299
           KPGW+VLDACSAPGNKTVHLA+LM GKG+++ACELN+ RV+RL+ TIKLSGA+NI+VLHG
Sbjct: 241 KPGWEVLDACSAPGNKTVHLASLMHGKGRVIACELNENRVKRLRHTIKLSGASNIDVLHG 300

Query: 300 DFLNLDPKDPAYSEVSLIF 318
           DFLNL+PKDP+ S+V  I 
Sbjct: 301 DFLNLNPKDPSLSKVRAIL 319

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356507034|ref|XP_003522276.1| PREDICTED: putative methyltransferase NSUN5-like [Glycine max]

 Score =  427 bits (1099), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 210/296 (70%), Positives = 259/296 (87%)

Query: 23  RLSNAERSAYFARREAAKVLRLVLRGDARRRAVGSIKSLVYSPSVKNKKATYALVCQTLK 82
           +   AERSAYFARREAAKVL+++L GDA+RRA+ SIKSL+Y PSV+NKKAT+AL+CQTLK
Sbjct: 16  KFKGAERSAYFARREAAKVLKVILEGDAKRRALASIKSLIYQPSVRNKKATFALICQTLK 75

Query: 83  HLSIIKQVLDSASILNSKWKRQEELVYILTYDILFGQEISLVGDAEKFLMLHKGAIQLAL 142
           HL IIK VL++ASILN+KWKRQ EL+YI+ YDIL GQ +SLVGDAEK+LM H+ A++  L
Sbjct: 76  HLPIIKDVLEAASILNTKWKRQRELIYIIVYDILLGQAVSLVGDAEKYLMRHQDALRSTL 135

Query: 143 AQLLVRNKVKSIEDLMALYQTPDVPKPRYVRVNTLKMDVDSAVLELGKQFVVQKDDLVPD 202
            QLL++  VK+++ L+AL+Q PD+  PRYVRVNTLK+DVDSA+LEL K++ VQKD+L+PD
Sbjct: 136 KQLLLQRNVKTVKQLIALHQVPDISVPRYVRVNTLKLDVDSALLELQKKYSVQKDNLLPD 195

Query: 203 LLILPPGCDLHVHPLIVNGCVFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAAL 262
           LLILPPG DLH HPL+ NG +FLQGKASSM A AL+P+PGW+VLDAC+APGNKTVHLAAL
Sbjct: 196 LLILPPGTDLHDHPLVKNGSIFLQGKASSMAAPALSPEPGWEVLDACAAPGNKTVHLAAL 255

Query: 263 MKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVSLIF 318
           MK KGKI+ACEL KER++RLKDTIKLSGA+NI+VL+ DFLNL+PKDP+YS+V  I 
Sbjct: 256 MKRKGKIIACELQKERIKRLKDTIKLSGASNIQVLNDDFLNLNPKDPSYSKVKAIL 311

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297808641|ref|XP_002872204.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297318041|gb|EFH48463.1| predicted protein [Arabidopsis lyrata subsp. lyrata]

 Score =  427 bits (1097), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 212/328 (64%), Positives = 257/328 (78%), Gaps = 10/328 (3%)

Query: 1   MARTKTAATAP-----SGASAKTSRN-----GRLSNAERSAYFARREAAKVLRLVLRGDA 50
           MAR     T P     SGA +   +         S AERSA +ARREAA VLR +LRGDA
Sbjct: 1   MARRHKPKTPPAKQRFSGAESHKPKTPPATKQSFSAAERSALYARREAANVLRSILRGDA 60

Query: 51  RRRAVGSIKSLVYSPSVKNKKATYALVCQTLKHLSIIKQVLDSASILNSKWKRQEELVYI 110
            RRAV SIKSLV+SPSV+NK+AT+ALVC+TLKHL++IK VL+ A++LNSKWKRQE LVYI
Sbjct: 61  ERRAVASIKSLVFSPSVRNKRATFALVCETLKHLTVIKDVLEIANVLNSKWKRQEPLVYI 120

Query: 111 LTYDILFGQEISLVGDAEKFLMLHKGAIQLALAQLLVRNKVKSIEDLMALYQTPDVPKPR 170
           + YDILFG++   +GDAEKFLM HK A+   LA LLVR KV+S++ L+ L +     KPR
Sbjct: 121 ICYDILFGKDTPSIGDAEKFLMRHKDALLSGLATLLVRKKVESVDQLLGLSKLNGHLKPR 180

Query: 171 YVRVNTLKMDVDSAVLELGKQFVVQKDDLVPDLLILPPGCDLHVHPLIVNGCVFLQGKAS 230
           YVRVNTLKMDVDSAV EL K + VQ+D+ VPDLL+LPPG DLH H L+ NG +FLQGKAS
Sbjct: 181 YVRVNTLKMDVDSAVQELEKHYTVQRDETVPDLLVLPPGSDLHAHRLVANGRIFLQGKAS 240

Query: 231 SMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSG 290
           SMVAAAL P+ GW+VLDACSAPGNKT+HLAALM+G+GKI+ACELN+ERV+RL+ TIKLSG
Sbjct: 241 SMVAAALQPEAGWEVLDACSAPGNKTIHLAALMQGQGKIIACELNEERVKRLEHTIKLSG 300

Query: 291 AANIEVLHGDFLNLDPKDPAYSEVSLIF 318
           A+NI+V HGDFL L+PKDP++ +V  I 
Sbjct: 301 ASNIQVFHGDFLGLNPKDPSFVKVRAIL 328

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30690149|ref|NP_851079.1| NOL1/NOP2/sun family protein [Arabidopsis thaliana] gi|30690152|ref|NP_197990.2| NOL1/NOP2/sun family protein [Arabidopsis thaliana] gi|26450438|dbj|BAC42333.1| unknown protein [Arabidopsis thaliana] gi|30793929|gb|AAP40417.1| unknown protein [Arabidopsis thaliana] gi|332006150|gb|AED93533.1| NOL1/NOP2/sun family protein [Arabidopsis thaliana] gi|332006151|gb|AED93534.1| NOL1/NOP2/sun family protein [Arabidopsis thaliana]

 Score =  418 bits (1074), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 205/312 (65%), Positives = 252/312 (80%), Gaps = 6/312 (1%)

Query: 12  SGASAKTSRN-----GRLSNAERSAYFARREAAKVLRLVLRGDARRRAVGSIKSLVYSPS 66
           SGA ++  +       + S+ ERSA +ARREAA +LR VLRGDA RRAV SIKSLV SPS
Sbjct: 71  SGAESRKPKTPPATKQKFSSLERSALYARREAANILRTVLRGDAERRAVASIKSLVLSPS 130

Query: 67  VKNKKATYALVCQTLKHLSIIKQVLDSASILNSKWKRQEELVYILTYDILFGQEISLVGD 126
           V+NK+ T+ALVC+TLK+L++IK VLD A++LNSKWKRQE LV+I+ YDILFG++   +GD
Sbjct: 131 VRNKRGTFALVCETLKYLTVIKDVLDIANVLNSKWKRQEPLVFIVCYDILFGKDTPSIGD 190

Query: 127 AEKFLMLHKGAIQLALAQLLVRNKVKSIEDLMALYQTPDVPKPRYVRVNTLKMDVDSAVL 186
           AEKFLM HK A+   LA LLVR KV S++ L+    T  + KPRYVRVNTLKMDVDSAV 
Sbjct: 191 AEKFLMRHKEALLSGLATLLVRKKVDSVDQLLGSKLTGHL-KPRYVRVNTLKMDVDSAVQ 249

Query: 187 ELGKQFVVQKDDLVPDLLILPPGCDLHVHPLIVNGCVFLQGKASSMVAAALAPKPGWKVL 246
           EL K + VQKD+ VPDLL+LPPG DLH H L+ NG +FLQGKASSMVAAAL P+ GW+VL
Sbjct: 250 ELEKHYTVQKDETVPDLLVLPPGSDLHAHRLVANGRIFLQGKASSMVAAALQPQAGWEVL 309

Query: 247 DACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDP 306
           DACSAPGNKT+HLAALM+G+GKI+ACELN+ERV+RL+ TIKLSGA+NIEV HGDFL L+P
Sbjct: 310 DACSAPGNKTIHLAALMEGQGKIIACELNEERVKRLEHTIKLSGASNIEVCHGDFLGLNP 369

Query: 307 KDPAYSEVSLIF 318
           KDP+++++  I 
Sbjct: 370 KDPSFAKIRAIL 381

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356514695|ref|XP_003526039.1| PREDICTED: putative methyltransferase NSUN5-like [Glycine max]

 Score =  416 bits (1069), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 211/305 (69%), Positives = 256/305 (83%), Gaps = 9/305 (2%)

Query: 23  RLSNAERSAYFARREAAKVLRLVLRGDARRRAVGSIKSLVYSPSVKNKKATYALVCQTLK 82
           +L  A+RSAYFARREAAKVL++VL GDA+RRA+ SIKSL+Y PSV+NKKAT+AL+CQTLK
Sbjct: 13  KLKGADRSAYFARREAAKVLKVVLEGDAKRRALASIKSLIYQPSVRNKKATFALICQTLK 72

Query: 83  HLSIIKQVLDSASILNSKWKRQEELVYILTYDILFGQEISLVGDAEKFLMLHKGAIQLAL 142
           HL II  VL++ASILNSKWKRQ EL+YI+ YDILFGQ + LVGDAEKFLM H+ A++  L
Sbjct: 73  HLPIINYVLEAASILNSKWKRQRELIYIIVYDILFGQAVPLVGDAEKFLMRHQDALRSTL 132

Query: 143 AQLLVRNKVKSIEDLMALYQTP---------DVPKPRYVRVNTLKMDVDSAVLELGKQFV 193
            QLL++  VK+++ L+AL+Q P         DV  PRYVRVNTLK+DVDSA+LEL K + 
Sbjct: 133 KQLLLQRNVKTVKQLIALHQVPGHCSNSSCADVSVPRYVRVNTLKLDVDSALLELQKNYS 192

Query: 194 VQKDDLVPDLLILPPGCDLHVHPLIVNGCVFLQGKASSMVAAALAPKPGWKVLDACSAPG 253
           VQKD L+PDLLILPPG DLH HPL+ NG +FLQGKASSM A AL+P+PGW+VLDAC+APG
Sbjct: 193 VQKDHLLPDLLILPPGTDLHDHPLVKNGSIFLQGKASSMAAPALSPEPGWEVLDACAAPG 252

Query: 254 NKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSE 313
           NKTVHLAALMK KGKI+ACEL +ER++RLKDTIKLSGA+NI+VL+ DFLN +PKDP+YS+
Sbjct: 253 NKTVHLAALMKRKGKIIACELQRERIKRLKDTIKLSGASNIQVLNDDFLNQNPKDPSYSK 312

Query: 314 VSLIF 318
           V  I 
Sbjct: 313 VKAIL 317

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	335
TAIR|locus:2179749	567	AT5G26180 "AT5G26180" [Arabido	0.877	0.518	0.654	3.5e-98
ZFIN|ZDB-GENE-040426-2476	483	nsun5 "NOP2/Sun domain family,	0.522	0.362	0.340	2e-40
UNIPROTKB|Q96P11	429	NSUN5 "Putative methyltransfer	0.319	0.249	0.467	9.8e-40
MGI|MGI:2140844	465	Nsun5 "NOL1/NOP2/Sun domain fa	0.319	0.230	0.439	6.2e-36
DICTYBASE|DDB_G0267872	680	DDB_G0267872 "NOL1/NOP2/Sun fa	0.325	0.160	0.449	5.7e-34
POMBASE|SPAC2C4.06c	460	SPAC2C4.06c "tRNA (cytosine-5-	0.767	0.558	0.335	1.3e-29
UNIPROTKB|G4MPG8	557	MGG_05721 "Uncharacterized pro	0.325	0.195	0.344	2.8e-18
SGD|S000004967	490	YNL022C "Putative cytosine 5-m	0.298	0.204	0.379	9.4e-15
CGD|CAL0003354	498	orf19.2604 [Candida albicans (	0.379	0.255	0.264	5.7e-14
UNIPROTKB|Q5A962	498	CaO19.10135 "Putative uncharac	0.379	0.255	0.264	5.7e-14

TAIR|locus:2179749 AT5G26180 "AT5G26180" [Arabidopsis thaliana (taxid:3702)]

 Score = 975 (348.3 bits), Expect = 3.5e-98, P = 3.5e-98
 Identities = 193/295 (65%), Positives = 235/295 (79%)

Query:    23 RLSNAERSAYFARREAAKVLRLVLRGDARRRAVGSIKSLVYSPSVKNKKATYALVCQTLK 82
             + S+ ERSA +ARREAA +LR VLRGDA RRAV SIKSLV SPSV+NK+ T+ALVC+TLK
Sbjct:    87 KFSSLERSALYARREAANILRTVLRGDAERRAVASIKSLVLSPSVRNKRGTFALVCETLK 146

Query:    83 HLSIIKQVLDSASILNSKWKRQEELVYILTYDILFGQEISLVGDAEKFLMLHKGAIQLAL 142
             +L++IK VLD A++LNSKWKRQE LV+I+ YDILFG++   +GDAEKFLM HK A+   L
Sbjct:   147 YLTVIKDVLDIANVLNSKWKRQEPLVFIVCYDILFGKDTPSIGDAEKFLMRHKEALLSGL 206

Query:   143 AQLLVRNKVKSIEDLMALYQTPDVPKPRYVRVNTLKMDVDSAVLELGKQFVVQKXXXXXX 202
             A LLVR KV S++ L+    T  + KPRYVRVNTLKMDVDSAV EL K + VQK      
Sbjct:   207 ATLLVRKKVDSVDQLLGSKLTGHL-KPRYVRVNTLKMDVDSAVQELEKHYTVQKDETVPD 265

Query:   203 XXXXXXGCDLHVHPLIVNGCVFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAAL 262
                   G DLH H L+ NG +FLQGKASSMVAAAL P+ GW+VLDACSAPGNKT+HLAAL
Sbjct:   266 LLVLPPGSDLHAHRLVANGRIFLQGKASSMVAAALQPQAGWEVLDACSAPGNKTIHLAAL 325

Query:   263 MKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVSLI 317
             M+G+GKI+ACELN+ERV+RL+ TIKLSGA+NIEV HGDFL L+PKDP+++++  I
Sbjct:   326 MEGQGKIIACELNEERVKRLEHTIKLSGASNIEVCHGDFLGLNPKDPSFAKIRAI 380

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

ZFIN|ZDB-GENE-040426-2476 nsun5 "NOP2/Sun domain family, member 5" [Danio rerio (taxid:7955)]

 Score = 243 (90.6 bits), Expect = 2.0e-40, Sum P(2) = 2.0e-40
 Identities = 65/191 (34%), Positives = 105/191 (54%)

Query:    37 EAAKVLRLVLRGDARRRAVGSIKSLVYSPSVKNKKATYALVCQTLKHLSIIKQVLDSASI 96
             +AA++L  V   + +R   G++K+LVY     N K  +ALVC+T K+ S++++++DS  +
Sbjct:     6 KAAEILEKV---EQKR---GAVKTLVYDSKFPNIKQLFALVCETQKYSSVLQEIIDSTKL 59

Query:    97 LNSKWKRQEELVYILTYDILFGQEISLVGDAEKFLML-HKGAIQLALAQLLVRNKVKSIE 155
             L    K +  L  +L YD+L G  +   G A K  ML H+  +Q ALA++ ++ KV   +
Sbjct:    60 LKET-KLRIHLAKVLVYDLLIGHGVKC-GGAWKMTMLKHRARLQAALARIKIKRKVSRNQ 117

Query:   156 DLM--ALYQTPDVPKPRYVRVNTLKMDVDSAVLELGKQ-FVVQKXXXXXXXXXXXXG--- 209
             DL+  ++ QT +   PRYVRVNTLK  ++  +  L ++ F  Q             G   
Sbjct:   118 DLLPSSIQQTQNDVIPRYVRVNTLKTSLEDVIDYLKREGFSYQGTPGRLEDLDRLSGKMF 177

Query:   210 -CDLHVHPLIV 219
              CDLH+  L+V
Sbjct:   178 LCDLHLKDLLV 188

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

UNIPROTKB|Q96P11 NSUN5 "Putative methyltransferase NSUN5" [Homo sapiens (taxid:9606)]

 Score = 241 (89.9 bits), Expect = 9.8e-40, Sum P(2) = 9.8e-40
 Identities = 50/107 (46%), Positives = 67/107 (62%)

Query:   211 DLHVHPLIVNGCVFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIV 270
             DLH HPL   G + LQ +AS + A  L P PG  V+DAC+APGNKT HLAAL+K +GKI 
Sbjct:   196 DLHEHPLYRAGHLILQDRASCLPAMLLDPPPGSHVIDACAAPGNKTSHLAALLKNQGKIF 255

Query:   271 ACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVSLI 317
             A +L+ +R+  +   +  +G +  E+   DFL + P DP Y EV  I
Sbjct:   256 AFDLDAKRLASMATLLARAGVSCCELAEEDFLAVSPSDPRYHEVHYI 302

GO:0008168 "methyltransferase activity" evidence=IEA

MGI|MGI:2140844 Nsun5 "NOL1/NOP2/Sun domain family, member 5" [Mus musculus (taxid:10090)]

 Score = 231 (86.4 bits), Expect = 6.2e-36, Sum P(2) = 6.2e-36
 Identities = 47/107 (43%), Positives = 67/107 (62%)

Query:   211 DLHVHPLIVNGCVFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIV 270
             DLH HPL   G + LQ KAS + A  L+P PG  V+DAC+APGNKT ++AAL+K +GKI 
Sbjct:   196 DLHEHPLYRAGHLILQDKASCLPAMLLSPPPGSHVIDACAAPGNKTSYIAALLKNQGKIF 255

Query:   271 ACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVSLI 317
             A + + +R+  +   +  +G +  E+   DFL + P D  YS+V  I
Sbjct:   256 AFDQDAKRLAAMATLVARAGVSCCELAEKDFLTVSPSDQRYSQVQYI 302

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

GO:0032259 "methylation" evidence=IEA

DICTYBASE|DDB_G0267872 DDB_G0267872 "NOL1/NOP2/Sun family protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 229 (85.7 bits), Expect = 5.7e-34, Sum P(2) = 5.7e-34
 Identities = 49/109 (44%), Positives = 65/109 (59%)

Query:   211 DLHVHPLIVNGCVFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIV 270
             DLH H +++NG + LQ KAS + +  L+P PG   +D+CSAPGNKT  L+A MK  GKI 
Sbjct:   226 DLHDHKMLLNGQIILQDKASCLPSFILSPPPGSVCIDSCSAPGNKTSLLSAQMKNTGKIF 285

Query:   271 ACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVSLIFC 319
             A E + +R   L    K S   NIE ++  FLNL   DP + +V  I C
Sbjct:   286 AIEKDTKRCGTLIKLTKRSLCKNIETINDSFLNLKHDDPKFKDVEYILC 334

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

POMBASE|SPAC2C4.06c SPAC2C4.06c "tRNA (cytosine-5-)-methyltransferase (predicted)" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 328 (120.5 bits), Expect = 1.3e-29, P = 1.3e-29
 Identities = 93/277 (33%), Positives = 144/277 (51%)

Query:    56 GSIKSLVYSPSVKNKKATYALVCQTLKHLSIIKQVLDSASILNSKWKRQEELVYILTYDI 115
             GSIK L ++    + K TYALVC+TLK+  ++ +++  + +L  + K +E L  +L +D+
Sbjct:    19 GSIKQLAFNSKKHDPKRTYALVCETLKYKPVLDEIIARSELLVLEKKLKENLARVLVHDL 78

Query:   116 LFGQE-ISLV-GDAEKFLMLHKGAIQLALAQLLVRNKVKSIEDLMALYQTPDVPKPRYVR 173
             L  +  +S+  G  ++ ++ HK  +     +L V+  VKS E+L AL + P V  PR++R
Sbjct:    79 LMSKRGLSISNGPIKECILRHKTRLNAEFVKLKVKKGVKSHEEL-AL-KNP-VSLPRWLR 135

Query:   174 VNTLKMDVDSAVLELGKQFVVQKXXXXXXXXXXXXGCDLHV------HPLIVN-----GC 222
             +NT+K   D  +  LG    V               C  ++       P++ N     G 
Sbjct:   136 INTIKSTKDEVLQGLGLD-KVSSIEELGPDKFYIDDCVENLIAIDPSFPIVENSLYKEGK 194

Query:   223 VFLQGKASSMVAAALAPKPGW--KVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVR 280
             V +Q KAS   AA LA   G    ++D C+APGNKT HLAA    K  I A E + +RV+
Sbjct:   195 VIIQDKASCFPAAVLAGLTGHVGDIIDGCAAPGNKTTHLAACFP-KSHIFAFERDAKRVQ 253

Query:   281 RLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVSLI 317
              L+  + +SGA N+ + H DF   DPK   Y  V+ I
Sbjct:   254 TLRKMVGISGANNVTIEHQDFTLTDPKSDLYRNVTHI 290

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0008150 "biological_process" evidence=ND

GO:0008168 "methyltransferase activity" evidence=IEA

UNIPROTKB|G4MPG8 MGG_05721 "Uncharacterized protein" [Magnaporthe oryzae 70-15 (taxid:242507)]

 Score = 152 (58.6 bits), Expect = 2.8e-18, Sum P(2) = 2.8e-18
 Identities = 43/125 (34%), Positives = 64/125 (51%)

Query:   209 GCDLHVHPLIVNGCVFLQGKASSMVAAALAPKP-GWKVLDACSAPGNKTVHLAALMK--- 264
             G D+       +G V LQ KAS   A  L P+P    V+DAC+APGNKT H AA+++   
Sbjct:   200 GSDITKTEAYKSGAVILQDKASCFPAYLLDPRPEDGDVIDACAAPGNKTTHAAAVLEEYR 259

Query:   265 -------GKGK---IVACELNKERVRRLKDTIKLSGAANIEVLH-G-DFLNLDPKDPAYS 312
                     KG    + A E +  R   L   +K++G+ +  V++ G DF+  DP  P Y 
Sbjct:   260 TAVNVKESKGSRSTVHAFEKDSRRAEILAKMVKIAGSDSFTVVNKGKDFMKADPNSPLYK 319

Query:   313 EVSLI 317
             +V+ +
Sbjct:   320 DVAAL 324

GO:0003674 "molecular_function" evidence=ISS

GO:0005634 "nucleus" evidence=ISS

GO:0042254 "ribosome biogenesis" evidence=ISS

SGD|S000004967 YNL022C "Putative cytosine 5-methyltransferase" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 148 (57.2 bits), Expect = 9.4e-15, Sum P(2) = 9.4e-15
 Identities = 41/108 (37%), Positives = 59/108 (54%)

Query:   215 HPLIVNGCVFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALM-----KGKG-K 268
             H L  +G + +Q +AS   A  L P P   V+D+CSAPGNKT H A+ +     K    +
Sbjct:   216 HELYKHGKIIIQDRASCFPAHILNPGPSDIVIDSCSAPGNKTTHTASYIYPEPPKDNNTR 275

Query:   269 IVACELNKERVRRLKDTIKLSGAA-NIEVLHGDFLNLDPKDPAYSEVS 315
             I A E + ER + L+  IK++G + NI V  GDF  L   +  Y +V+
Sbjct:   276 IYAFEKDPERAKVLQKMIKIAGCSPNISVNVGDFTKLATPEK-YKDVT 322

GO:0005634 "nucleus" evidence=IDA

GO:0016428 "tRNA (cytosine-5-)-methyltransferase activity" evidence=ISM

GO:0008150 "biological_process" evidence=ND

CGD|CAL0003354 orf19.2604 [Candida albicans (taxid:5476)]

 Score = 128 (50.1 bits), Expect = 5.7e-14, Sum P(2) = 5.7e-14
 Identities = 36/136 (26%), Positives = 67/136 (49%)

Query:    56 GSIKSLVYSPS--VKNKKATYALVCQTLKHLSIIKQVLDSASILNS----KWKRQEELVY 109
             GS++S +++      + K  +ALV  TLK+   I  ++  + I +     K K   EL+ 
Sbjct:    55 GSLQSRIFNDKRLTNSPKHIFALVYSTLKYKEYIDVIVKKSKIQHDLQIKKVKMSNELLC 114

Query:   110 ILTYDILFGQEISLVGDAEKF---LMLHKGAIQLALAQLLVRNKVKSIEDLMALYQTPDV 166
             +L +D+LF  +  +           + +K  +Q    +L ++ KVKS++ L       D 
Sbjct:   115 LLVHDLLFSSKGRIQSGKHPMKDAFLSNKTRLQAEFTKLKLKYKVKSVDQLPTKEADDDE 174

Query:   167 PKPRYVRVNTLKMDVD 182
                R+ R+NT+K+D+D
Sbjct:   175 TPIRWFRINTIKIDID 190

GO:0003674 "molecular_function" evidence=ND

GO:0005730 "nucleolus" evidence=IEA

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q5A962 CaO19.10135 "Putative uncharacterized protein" [Candida albicans SC5314 (taxid:237561)]

 Score = 128 (50.1 bits), Expect = 5.7e-14, Sum P(2) = 5.7e-14
 Identities = 36/136 (26%), Positives = 67/136 (49%)

Query:    56 GSIKSLVYSPS--VKNKKATYALVCQTLKHLSIIKQVLDSASILNS----KWKRQEELVY 109
             GS++S +++      + K  +ALV  TLK+   I  ++  + I +     K K   EL+ 
Sbjct:    55 GSLQSRIFNDKRLTNSPKHIFALVYSTLKYKEYIDVIVKKSKIQHDLQIKKVKMSNELLC 114

Query:   110 ILTYDILFGQEISLVGDAEKF---LMLHKGAIQLALAQLLVRNKVKSIEDLMALYQTPDV 166
             +L +D+LF  +  +           + +K  +Q    +L ++ KVKS++ L       D 
Sbjct:   115 LLVHDLLFSSKGRIQSGKHPMKDAFLSNKTRLQAEFTKLKLKYKVKSVDQLPTKEADDDE 174

Query:   167 PKPRYVRVNTLKMDVD 182
                R+ R+NT+K+D+D
Sbjct:   175 TPIRWFRINTIKIDID 190

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.1.1	LOW CONFIDENCE prediction!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00032231001	SubName- Full=Chromosome chr4 scaffold_6, whole genome shotgun sequence; (508 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00033408001	SubName- Full=Chromosome chr19 scaffold_66, whole genome shotgun sequence; (430 aa)			•	•			•	•	0.499
	GSVIVG00019376001	SubName- Full=Chromosome chr7 scaffold_20, whole genome shotgun sequence; (1041 aa)				•			•		0.482
	GSVIVG00001542001	SubName- Full=Chromosome chr11 scaffold_118, whole genome shotgun sequence; (207 aa)				•			•		0.478

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	335
COG0144	355	COG0144, Sun, tRNA and rRNA cytosine-C5-methylases	3e-36
PRK14902	444	PRK14902, PRK14902, 16S rRNA methyltransferase B;	6e-31
TIGR00563	426	TIGR00563, rsmB, ribosomal RNA small subunit methy	9e-19
TIGR00446	264	TIGR00446, nop2p, NOL1/NOP2/sun family putative RN	4e-18
pfam01189	277	pfam01189, Nol1_Nop2_Fmu, NOL1/NOP2/sun family	1e-16
PRK14901	434	PRK14901, PRK14901, 16S rRNA methyltransferase B;	7e-16
PRK14904	445	PRK14904, PRK14904, 16S rRNA methyltransferase B;	1e-13
PRK14903	431	PRK14903, PRK14903, 16S rRNA methyltransferase B;	5e-13
PRK11933	470	PRK11933, yebU, rRNA (cytosine-C(5)-)-methyltransf	6e-12
PRK10901	427	PRK10901, PRK10901, 16S rRNA methyltransferase B;	1e-11
pfam12847	104	pfam12847, Methyltransf_18, Methyltransferase doma	3e-07
cd02440	107	cd02440, AdoMet_MTases, S-adenosylmethionine-depen	9e-07
COG2226	238	COG2226, UbiE, Methylase involved in ubiquinone/me	1e-06
smart00650	169	smart00650, rADc, Ribosomal RNA adenine dimethylas	1e-05
pfam13847	151	pfam13847, Methyltransf_31, Methyltransferase doma	2e-05
pfam00398	254	pfam00398, RrnaAD, Ribosomal RNA adenine dimethyla	3e-05
COG4123	248	COG4123, COG4123, Predicted O-methyltransferase [G	5e-05
pfam13659	117	pfam13659, Methyltransf_26, Methyltransferase doma	7e-05
pfam01135	210	pfam01135, PCMT, Protein-L-isoaspartate(D-aspartat	1e-04
pfam01209	233	pfam01209, Ubie_methyltran, ubiE/COQ5 methyltransf	2e-04
TIGR02469	124	TIGR02469, CbiT, precorrin-6Y C5,15-methyltransfer	7e-04
COG2242	187	COG2242, CobL, Precorrin-6B methylase 2 [Coenzyme	0.003
PRK00216	239	PRK00216, ubiE, ubiquinone/menaquinone biosynthesi	0.004

>gnl|CDD|223222 COG0144, Sun, tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]

 Score =  133 bits (337), Expect = 3e-36
 Identities = 61/196 (31%), Positives = 101/196 (51%), Gaps = 8/196 (4%)

Query: 126 DAEKFLMLHKGAIQLALAQLLVRNKVKSIEDLMALYQTPDVPKPRYVRVNTLKMDVDSAV 185
               F   H   +   L   L  ++ ++I    AL + P    PR +RVNTLK DV+  +
Sbjct: 46  LRPAFRYSHPEWLVEKLPDALGEDEAEAI--AAALLRPP----PRSLRVNTLKADVEELL 99

Query: 186 LELGKQ-FVVQKDDLVPDLLILPPGCDLHVHPLIVNGCVFLQGKASSMVAAALAPKPGWK 244
             L +   + +K  ++ ++L +     +   P    G +++Q +AS + A  L PKPG +
Sbjct: 100 EALEEAGVLDEKPWVLDEVLRIEASGPIGRLPEFAEGLIYVQDEASQLPALVLDPKPGER 159

Query: 245 VLDACSAPGNKTVHLAALMKGKGKIV-ACELNKERVRRLKDTIKLSGAANIEVLHGDFLN 303
           VLD C+APG KT HLA LM+ +G IV A +++ +R++RL++ +K  G  N+ V++ D   
Sbjct: 160 VLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVRNVIVVNKDARR 219

Query: 304 LDPKDPAYSEVSLIFC 319
           L    P   +   I  
Sbjct: 220 LAELLPGGEKFDRILL 235

Length = 355

>gnl|CDD|237857 PRK14902, PRK14902, 16S rRNA methyltransferase B; Provisional

 Score =  120 bits (304), Expect = 6e-31
 Identities = 50/143 (34%), Positives = 86/143 (60%), Gaps = 2/143 (1%)

Query: 166 VPKPRYVRVNTLKMDVDSAVLELGKQ-FVVQKDDLVPDLLILPPGCDLHVHPLIVNGCVF 224
            P    +RVNTLK+ V+  + +L ++ + V++  L P+ L++  G ++    L  +G + 
Sbjct: 175 EPPKASIRVNTLKISVEELIEKLEEEGYEVEESLLSPEALVIEKG-NIAGTDLFKDGLIT 233

Query: 225 LQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKD 284
           +Q ++S +VA AL PK G  VLDAC+APG KT H+A L+K  GK+VA ++++ +++ +++
Sbjct: 234 IQDESSMLVAPALDPKGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEE 293

Query: 285 TIKLSGAANIEVLHGDFLNLDPK 307
             K  G  NIE    D   +  K
Sbjct: 294 NAKRLGLTNIETKALDARKVHEK 316

Length = 444

>gnl|CDD|233025 TIGR00563, rsmB, ribosomal RNA small subunit methyltransferase RsmB

 Score = 86.1 bits (213), Expect = 9e-19
 Identities = 41/136 (30%), Positives = 68/136 (50%), Gaps = 3/136 (2%)

Query: 167 PKPRYVRVNTLKMDVDSAVLELGKQFV-VQKDDLVPDLLILPPGCDLHVHPLIVNGCVFL 225
             P ++R+N  K   D  +  L +  +     DL PD + L     +H  P    G V +
Sbjct: 163 RPPMWLRINRTKHSRDEWLALLAEAGMKGFPHDLAPDAVRLETPAAVHALPGFEEGWVTV 222

Query: 226 QGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDT 285
           Q  ++  VA  LAP+    +LDAC+APG KT H+  L   + ++VA ++++ R++R+ + 
Sbjct: 223 QDASAQWVATWLAPQNEETILDACAAPGGKTTHILELA-PQAQVVALDIHEHRLKRVYEN 281

Query: 286 IK-LSGAANIEVLHGD 300
           +K L      E   GD
Sbjct: 282 LKRLGLTIKAETKDGD 297

This protein is also known as sun protein. The reading frame was originally interpreted as two reading frames, fmu and fmv. The recombinant protein from E. coli was shown to methylate only C967 of small subunit (16S) ribosomal RNA and to produce only m5C at that position. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles [Protein synthesis, tRNA and rRNA base modification]. Length = 426

>gnl|CDD|188051 TIGR00446, nop2p, NOL1/NOP2/sun family putative RNA methylase

 Score = 82.1 bits (203), Expect = 4e-18
 Identities = 43/134 (32%), Positives = 64/134 (47%), Gaps = 9/134 (6%)

Query: 172 VRVNTLKMDVDSAVLELGKQFVVQKDDLVP-----DLLILPPGCDLHVHPLIVNGCVFLQ 226
           +RVNTLK++V+  +  L  + VV +                 G      P  + G  + Q
Sbjct: 1   IRVNTLKINVEDLLERLENRGVVLEPTCEEYFFEVKESPFSIGST----PEYLFGYYYPQ 56

Query: 227 GKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTI 286
             +S +   AL P+   +VLD  +APG KT  ++ LMK KG IVA E++K R + L   I
Sbjct: 57  EASSMIPPIALEPREDERVLDMAAAPGGKTTQISQLMKNKGCIVANEISKSRTKALISNI 116

Query: 287 KLSGAANIEVLHGD 300
              G  N  V++ D
Sbjct: 117 NRMGVLNTIVINAD 130

[Protein synthesis, tRNA and rRNA base modification]. Length = 264

>gnl|CDD|201649 pfam01189, Nol1_Nop2_Fmu, NOL1/NOP2/sun family

 Score = 78.2 bits (193), Expect = 1e-16
 Identities = 46/137 (33%), Positives = 66/137 (48%), Gaps = 2/137 (1%)

Query: 166 VPKPRYVRVNTLKMDVDSAVLELGKQFVVQK--DDLVPDLLILPPGCDLHVHPLIVNGCV 223
              P  +R N LK    S +  L    V  +        L +      +   P   NG V
Sbjct: 7   CSPPGTLRKNVLKTKRWSLLQALELAGVQLEPLGRYPHALPVGDLPYSIGSLPPFENGAV 66

Query: 224 FLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLK 283
            +Q  +S + A AL P+    +LD C+APG KT H+A LMK +G +VA + NK+R++R+ 
Sbjct: 67  TVQDASSQLDAIALNPQEDEFILDMCAAPGGKTTHIAELMKNEGTVVAVDRNKQRLKRVY 126

Query: 284 DTIKLSGAANIEVLHGD 300
             I+  G  NI V  GD
Sbjct: 127 ANIQRLGVFNIIVQEGD 143

Length = 277

>gnl|CDD|237856 PRK14901, PRK14901, 16S rRNA methyltransferase B; Provisional

 Score = 77.7 bits (192), Expect = 7e-16
 Identities = 32/84 (38%), Positives = 53/84 (63%)

Query: 226 QGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDT 285
           Q +++ +VA  L P+PG  +LDAC+APG KT H+A LM  +G+I A + +  R+++L++ 
Sbjct: 237 QDRSAQLVAPLLDPQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQEN 296

Query: 286 IKLSGAANIEVLHGDFLNLDPKDP 309
            +  G  +I++L  D  NL    P
Sbjct: 297 AQRLGLKSIKILAADSRNLLELKP 320

Length = 434

>gnl|CDD|237858 PRK14904, PRK14904, 16S rRNA methyltransferase B; Provisional

 Score = 71.2 bits (175), Expect = 1e-13
 Identities = 38/142 (26%), Positives = 64/142 (45%), Gaps = 10/142 (7%)

Query: 173 RVNTLKMDVDSAVLELGKQFVVQKDDLVPDLLILPPGCDLH-VHPLIVNGCVFLQGKASS 231
           R+N LK   +  +       V  +   +P+  +     D     P +  G V +Q    +
Sbjct: 184 RINRLKTTPEKFLAAPADASVTFEKSGLPNFFL---SKDFSLFEPFLKLGLVSVQNPTQA 240

Query: 232 MVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACEL--NK-ERVRRLKDTIKL 288
           +    L P+PG  VLD C+APG K+  +A LM+ +G+I A +    K E++R     +  
Sbjct: 241 LACLLLNPQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASAL-- 298

Query: 289 SGAANIEVLHGDFLNLDPKDPA 310
            G   IE + GD  +  P++  
Sbjct: 299 -GITIIETIEGDARSFSPEEQP 319

Length = 445

>gnl|CDD|184896 PRK14903, PRK14903, 16S rRNA methyltransferase B; Provisional

 Score = 69.1 bits (169), Expect = 5e-13
 Identities = 42/144 (29%), Positives = 80/144 (55%), Gaps = 10/144 (6%)

Query: 167 PKPRYVRVNTLKMDVDSAVLELGKQFVVQKDDLVP------DLLILPPGCDLHVHPLIVN 220
           P P  +RVN+L +  +  +  L ++      + VP       L++   G +++   +I +
Sbjct: 161 PLPTMLRVNSLAITREEVIKILAEE----GTEAVPGKHSPFSLIVRKLGVNMNDSRVIKD 216

Query: 221 GCVFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVR 280
           G   +QG++S +V   +  +PG +VLD C+APG KT  +A LMK +GKI+A ++++E+++
Sbjct: 217 GLATVQGESSQIVPLLMELEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQ 276

Query: 281 RLKDTIKLSGAANIEVLHGDFLNL 304
            ++   K    ++IE+   D   L
Sbjct: 277 LVEKHAKRLKLSSIEIKIADAERL 300

Length = 431

>gnl|CDD|183387 PRK11933, yebU, rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed

 Score = 65.7 bits (161), Expect = 6e-12
 Identities = 57/166 (34%), Positives = 81/166 (48%), Gaps = 32/166 (19%)

Query: 153 SIEDLMALYQTPDVPKPRYVRVNTLKMDVDSAVLELGKQ--------------FVVQKDD 198
           S++D +A  Q P     R +RVNTLK+ V    L+L                 F +++DD
Sbjct: 21  SMDDFIAACQRP---LRRSIRVNTLKISVA-DFLQLMAPYGWTLTPIPWCEEGFWIERDD 76

Query: 199 LVPDLLILPPG-CDLHVHPLIVNGCVFLQGKASSM--VAAALAPKPGWK-VLDACSAPGN 254
                  LP G    H+     +G  ++Q +ASSM  VAA  A     + VLD  +APG+
Sbjct: 77  EDA----LPLGNTAEHL-----SGLFYIQ-EASSMLPVAALFADDNAPQRVLDMAAAPGS 126

Query: 255 KTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGD 300
           KT  +AALM  +G IVA E +  RV+ L   I   G +N+ + H D
Sbjct: 127 KTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGVSNVALTHFD 172

Length = 470

>gnl|CDD|236790 PRK10901, PRK10901, 16S rRNA methyltransferase B; Provisional

 Score = 64.8 bits (159), Expect = 1e-11
 Identities = 43/132 (32%), Positives = 69/132 (52%), Gaps = 9/132 (6%)

Query: 173 RVNTLKMDVDS--AVL-ELGKQFVVQKDDLVPDLLILPPGCDLHVHPLIVNGCVFLQGKA 229
           RVN      D+  A+L E G +       + PD + L     +H  P    G V +Q  A
Sbjct: 175 RVNRRHHSRDAYLALLAEAGIE--AFPHAVGPDAIRLETPVPVHQLPGFAEGWVSVQDAA 232

Query: 230 SSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIK-L 288
           + + A  LAP+ G +VLDAC+APG KT H+  L     ++VA +++ +R+ R+++ ++ L
Sbjct: 233 AQLAATLLAPQNGERVLDACAAPGGKTAHILELAPQA-QVVALDIDAQRLERVRENLQRL 291

Query: 289 SGAANIEVLHGD 300
              A   V+ GD
Sbjct: 292 GLKA--TVIVGD 301

Length = 427

>gnl|CDD|221804 pfam12847, Methyltransf_18, Methyltransferase domain

 Score = 48.1 bits (115), Expect = 3e-07
 Identities = 18/82 (21%), Positives = 33/82 (40%), Gaps = 4/82 (4%)

Query: 241 PGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGD 300
           PG +VLD     G+  + LA L  G  ++   +L+ E +   ++  KL+    I  + GD
Sbjct: 1   PGARVLDIGCGTGSLAIELARLFPG-ARVTGVDLSPEMLELARENAKLALGPRITFVQGD 59

Query: 301 FLNLDPKDPAYSEVSLIFCIFT 322
             +       +     +F    
Sbjct: 60  APDALDLLEGF---DAVFIGGG 78

Protein in this family function as methyltransferases. Length = 104

>gnl|CDD|100107 cd02440, AdoMet_MTases, S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)

 Score = 46.7 bits (111), Expect = 9e-07
 Identities = 16/86 (18%), Positives = 31/86 (36%), Gaps = 4/86 (4%)

Query: 244 KVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLN 303
           +VLD     G   + LA+      ++   +++   +   +       A N+EVL GD   
Sbjct: 1   RVLDLGCGTGALALALASG--PGARVTGVDISPVALELARKAAAALLADNVEVLKGDAEE 58

Query: 304 LDPKDPAYSEVSLIFCIFTWMIIMFH 329
           L P+        +I        ++  
Sbjct: 59  LPPEADE--SFDVIISDPPLHHLVED 82

There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.). Length = 107

>gnl|CDD|225136 COG2226, UbiE, Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]

 Score = 48.4 bits (116), Expect = 1e-06
 Identities = 25/89 (28%), Positives = 46/89 (51%), Gaps = 1/89 (1%)

Query: 232 MVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGA 291
            + + L  KPG KVLD     G+  + LA    G G++V  ++++  +   ++ +K  G 
Sbjct: 42  ALISLLGIKPGDKVLDVACGTGDMALLLAKS-VGTGEVVGLDISESMLEVAREKLKKKGV 100

Query: 292 ANIEVLHGDFLNLDPKDPAYSEVSLIFCI 320
            N+E + GD  NL   D ++  V++ F +
Sbjct: 101 QNVEFVVGDAENLPFPDNSFDAVTISFGL 129

Length = 238

>gnl|CDD|128898 smart00650, rADc, Ribosomal RNA adenine dimethylases

 Score = 44.4 bits (106), Expect = 1e-05
 Identities = 26/84 (30%), Positives = 38/84 (45%), Gaps = 6/84 (7%)

Query: 233 VAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAA 292
           +  A   +PG  VL+     G  T  L    K   ++ A E++     RL++  K + A 
Sbjct: 5   IVRAANLRPGDTVLEIGPGKGALTEELLERAK---RVTAIEIDPRLAPRLRE--KFAAAD 59

Query: 293 NIEVLHGDFLNLD-PKDPAYSEVS 315
           N+ V+HGD L  D PK   Y  V 
Sbjct: 60  NLTVIHGDALKFDLPKLQPYKVVG 83

Length = 169

>gnl|CDD|222415 pfam13847, Methyltransf_31, Methyltransferase domain

 Score = 44.0 bits (104), Expect = 2e-05
 Identities = 20/88 (22%), Positives = 36/88 (40%)

Query: 239 PKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLH 298
            K G KVLD     G  T  LA  +    ++V  ++++E + + K+  K  G  N+E + 
Sbjct: 1   LKSGIKVLDLGCGTGYLTFILAEKLGPGAEVVGIDISEEAIEKAKENAKKLGYENVEFIQ 60

Query: 299 GDFLNLDPKDPAYSEVSLIFCIFTWMII 326
           GD   L       +   ++        +
Sbjct: 61  GDIEELPQLQLEDNSFDVVISNEVLNHL 88

This family appears to be have methyltransferase activity. Length = 151

>gnl|CDD|215900 pfam00398, RrnaAD, Ribosomal RNA adenine dimethylase

 Score = 44.6 bits (106), Expect = 3e-05
 Identities = 24/77 (31%), Positives = 37/77 (48%), Gaps = 6/77 (7%)

Query: 233 VAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAA 292
           +      +    VL+     G  T  LA   K   ++VA E++    +RL++  KL+   
Sbjct: 21  IVDKANLQESDTVLEIGPGKGALTTELAKRAK---QVVAIEIDPRLAKRLQE--KLALHP 75

Query: 293 NIEVLHGDFLNLD-PKD 308
           N+EV+H DFL    PKD
Sbjct: 76  NVEVVHQDFLKFSFPKD 92

Length = 254

>gnl|CDD|226608 COG4123, COG4123, Predicted O-methyltransferase [General function prediction only]

 Score = 43.8 bits (104), Expect = 5e-05
 Identities = 26/105 (24%), Positives = 44/105 (41%), Gaps = 5/105 (4%)

Query: 217 LIVNGCVFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLA-ALMKGKGKIVACELN 275
           +I + C F  G  + ++AA        ++LD  +  GN  + L  A    K KIV  E+ 
Sbjct: 20  IIQDRCGFRYGTDAILLAAFAPVPKKGRILDLGA--GNGALGLLLAQRTEKAKIVGVEIQ 77

Query: 276 KERVRRLKDTIKLSG-AANIEVLHGDFLNLDPKDPAYSEVSLIFC 319
           +E     +  + L+     I+V+  D      K   ++   LI C
Sbjct: 78  EEAAEMAQRNVALNPLEERIQVIEADIKEF-LKALVFASFDLIIC 121

Length = 248

>gnl|CDD|222295 pfam13659, Methyltransf_26, Methyltransferase domain

 Score = 41.3 bits (97), Expect = 7e-05
 Identities = 18/79 (22%), Positives = 30/79 (37%), Gaps = 4/79 (5%)

Query: 242 GWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAA-NIEVLHGD 300
           G +VLD  +  G   +  A       ++V  EL+ E     +  + L+G A  + V+ GD
Sbjct: 1   GDRVLDPGAGSGAFLLAAARAGP-DARVVGVELDPEAAALARRRLALAGLAPRVRVVVGD 59

Query: 301 FLNLDPKDPAYSEVSLIFC 319
              L           L+  
Sbjct: 60  ARELLELPDG--SFDLVLG 76

This family contains methyltransferase domains. Length = 117

>gnl|CDD|216320 pfam01135, PCMT, Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT)

 Score = 42.4 bits (100), Expect = 1e-04
 Identities = 23/75 (30%), Positives = 34/75 (45%), Gaps = 3/75 (4%)

Query: 229 ASSMVAAA---LAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDT 285
           A  M A     L  KPG +VL+  S  G  T   A ++   G +V+ E   E V   +  
Sbjct: 58  APHMHAMMLELLELKPGMRVLEIGSGSGYLTACFARMVGEVGLVVSIEHIPELVEIARRN 117

Query: 286 IKLSGAANIEVLHGD 300
           ++  G  N+ V+ GD
Sbjct: 118 LEKLGLENVIVVVGD 132

Length = 210

>gnl|CDD|110227 pfam01209, Ubie_methyltran, ubiE/COQ5 methyltransferase family

 Score = 42.0 bits (99), Expect = 2e-04
 Identities = 23/83 (27%), Positives = 39/83 (46%)

Query: 238 APKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVL 297
             K G K LD     G+ T  L+      GK+V  ++N+  ++  +   K  G  NIE L
Sbjct: 44  GVKRGNKFLDVAGGTGDWTFGLSDSAGSSGKVVGLDINENMLKEGEKKAKEEGKYNIEFL 103

Query: 298 HGDFLNLDPKDPAYSEVSLIFCI 320
            G+   L  +D ++  V++ F +
Sbjct: 104 QGNAEELPFEDDSFDIVTISFGL 126

Length = 233

>gnl|CDD|233880 TIGR02469, CbiT, precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit

 Score = 38.8 bits (91), Expect = 7e-04
 Identities = 18/75 (24%), Positives = 35/75 (46%), Gaps = 1/75 (1%)

Query: 235 AALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANI 294
           + L  +PG  + D  +  G+ T+  A L+   G++ A E N E +  ++  ++  G +NI
Sbjct: 13  SKLRLRPGDVLWDIGAGTGSVTIEAARLV-PNGRVYAIERNPEALDLIERNLRRFGVSNI 71

Query: 295 EVLHGDFLNLDPKDP 309
            ++ GD         
Sbjct: 72  VIVEGDAPEAPEDLL 86

This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL [Biosynthesis of cofactors, prosthetic groups, and carriers, Heme, porphyrin, and cobalamin]. Length = 124

>gnl|CDD|225151 COG2242, CobL, Precorrin-6B methylase 2 [Coenzyme metabolism]

 Score = 37.6 bits (88), Expect = 0.003
 Identities = 18/66 (27%), Positives = 35/66 (53%), Gaps = 1/66 (1%)

Query: 235 AALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANI 294
           + L P+PG ++ D  +  G+ T+  A      G+++A E ++E +  ++      G  N+
Sbjct: 28  SKLRPRPGDRLWDIGAGTGSITIEWALAGP-SGRVIAIERDEEALELIERNAARFGVDNL 86

Query: 295 EVLHGD 300
           EV+ GD
Sbjct: 87  EVVEGD 92

Length = 187

>gnl|CDD|234689 PRK00216, ubiE, ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed

 Score = 37.8 bits (89), Expect = 0.004
 Identities = 20/80 (25%), Positives = 34/80 (42%), Gaps = 13/80 (16%)

Query: 232 MVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELN-------KERVRRLKD 284
                L  +PG KVLD     G+  + LA  +   G++V  + +       +E++R    
Sbjct: 42  KTIKWLGVRPGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLR---- 97

Query: 285 TIKLSGAANIEVLHGDFLNL 304
              L  + N+E + GD   L
Sbjct: 98  --DLGLSGNVEFVQGDAEAL 115

Length = 239

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	335
PRK14903	431	16S rRNA methyltransferase B; Provisional	100.0
PRK14901	434	16S rRNA methyltransferase B; Provisional	100.0
PRK10901	427	16S rRNA methyltransferase B; Provisional	100.0
TIGR00563	426	rsmB ribosomal RNA small subunit methyltransferase	100.0
PRK14902	444	16S rRNA methyltransferase B; Provisional	100.0
PRK14904	445	16S rRNA methyltransferase B; Provisional	100.0
COG0144	355	Sun tRNA and rRNA cytosine-C5-methylases [Translat	100.0
PRK11933	470	yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF;	100.0
PF01189	283	Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR	100.0
KOG2360	413	consensus Proliferation-associated nucleolar prote	100.0
TIGR00446	264	nop2p NOL1/NOP2/sun family putative RNA methylase.	99.97
KOG1122	460	consensus tRNA and rRNA cytosine-C5-methylase (nuc	99.97
KOG2198	375	consensus tRNA cytosine-5-methylases and related e	99.79
cd00620	126	Methyltransferase_Sun N-terminal RNA binding domai	99.55
COG2226	238	UbiE Methylase involved in ubiquinone/menaquinone	99.49
TIGR01951	129	nusB transcription antitermination factor NusB. A	99.49
cd00619	130	Terminator_NusB Transcription termination factor N	99.48
PRK00202	137	nusB transcription antitermination protein NusB; R	99.47
PF01029	134	NusB: NusB family; InterPro: IPR006027 This domain	99.47
PF01209	233	Ubie_methyltran: ubiE/COQ5 methyltransferase famil	99.42
TIGR00080	215	pimt protein-L-isoaspartate(D-aspartate) O-methylt	99.31
COG2242	187	CobL Precorrin-6B methylase 2 [Coenzyme metabolism	99.28
PRK13942	212	protein-L-isoaspartate O-methyltransferase; Provis	99.26
cd00447	129	NusB_Sun RNA binding domain of NusB (N protein-Uti	99.24
PF08704	247	GCD14: tRNA methyltransferase complex GCD14 subuni	99.21
PRK13944	205	protein-L-isoaspartate O-methyltransferase; Provis	99.2
PF01135	209	PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl	99.16
TIGR02752	231	MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me	99.13
PRK00050	296	16S rRNA m(4)C1402 methyltranserfase; Provisional	99.13
PF05175	170	MTS: Methyltransferase small domain; InterPro: IPR	99.13
PTZ00146	293	fibrillarin; Provisional	99.12
PF13847	152	Methyltransf_31: Methyltransferase domain; PDB: 3T	99.11
PLN02233	261	ubiquinone biosynthesis methyltransferase	99.11
COG2519	256	GCD14 tRNA(1-methyladenosine) methyltransferase an	99.11
TIGR01177	329	conserved hypothetical protein TIGR01177. This fam	99.1
PF09445	163	Methyltransf_15: RNA cap guanine-N2 methyltransfer	99.1
PRK04266	226	fibrillarin; Provisional	99.1
PRK13943	322	protein-L-isoaspartate O-methyltransferase; Provis	99.09
PRK03522	315	rumB 23S rRNA methyluridine methyltransferase; Rev	99.09
COG2518	209	Pcm Protein-L-isoaspartate carboxylmethyltransfera	99.08
PRK09634	207	nusB transcription antitermination protein NusB; P	99.06
PRK13168	443	rumA 23S rRNA m(5)U1939 methyltransferase; Reviewe	99.05
PRK00312	212	pcm protein-L-isoaspartate O-methyltransferase; Re	99.04
KOG1540	296	consensus Ubiquinone biosynthesis methyltransferas	99.02
PRK07402	196	precorrin-6B methylase; Provisional	99.02
PRK00107	187	gidB 16S rRNA methyltransferase GidB; Reviewed	99.01
PRK15128	396	23S rRNA m(5)C1962 methyltransferase; Provisional	99.01
PRK00377	198	cbiT cobalt-precorrin-6Y C(15)-methyltransferase;	99.0
TIGR02469	124	CbiT precorrin-6Y C5,15-methyltransferase (decarbo	98.99
PF12847	112	Methyltransf_18: Methyltransferase domain; PDB: 3G	98.98
COG4123	248	Predicted O-methyltransferase [General function pr	98.98
TIGR00138	181	gidB 16S rRNA methyltransferase GidB. GidB (glucos	98.96
PRK11873	272	arsM arsenite S-adenosylmethyltransferase; Reviewe	98.95
PRK00121	202	trmB tRNA (guanine-N(7)-)-methyltransferase; Revie	98.93
PF13659	117	Methyltransf_26: Methyltransferase domain; PDB: 3G	98.93
TIGR03533	284	L3_gln_methyl protein-(glutamine-N5) methyltransfe	98.93
COG2230	283	Cfa Cyclopropane fatty acid synthase and related m	98.91
smart00650	169	rADc Ribosomal RNA adenine dimethylases.	98.9
PRK11207	197	tellurite resistance protein TehB; Provisional	98.89
PRK08287	187	cobalt-precorrin-6Y C(15)-methyltransferase; Valid	98.89
TIGR00479	431	rumA 23S rRNA (uracil-5-)-methyltransferase RumA.	98.88
PLN02244	340	tocopherol O-methyltransferase	98.88
PRK10909	199	rsmD 16S rRNA m(2)G966-methyltransferase; Provisio	98.88
TIGR00537	179	hemK_rel_arch HemK-related putative methylase. The	98.87
TIGR03534	251	RF_mod_PrmC protein-(glutamine-N5) methyltransfera	98.86
PRK14967	223	putative methyltransferase; Provisional	98.86
PF01170	179	UPF0020: Putative RNA methylase family UPF0020; In	98.85
PF13649	101	Methyltransf_25: Methyltransferase domain; PDB: 3B	98.85
PRK11805	307	N5-glutamine S-adenosyl-L-methionine-dependent met	98.83
COG2263	198	Predicted RNA methylase [Translation, ribosomal st	98.83
PRK15001	378	SAM-dependent 23S ribosomal RNA mG1835 methyltrans	98.82
PF02353	273	CMAS: Mycolic acid cyclopropane synthetase; InterP	98.81
TIGR03704	251	PrmC_rel_meth putative protein-(glutamine-N5) meth	98.81
COG2265	432	TrmA SAM-dependent methyltransferases related to t	98.79
COG2813	300	RsmC 16S RNA G1207 methylase RsmC [Translation, ri	98.79
TIGR00091	194	tRNA (guanine-N(7)-)-methyltransferase. In E. coli	98.79
PF05958	352	tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferas	98.78
TIGR02085	374	meth_trns_rumB 23S rRNA (uracil-5-)-methyltransfer	98.78
PRK14966	423	unknown domain/N5-glutamine S-adenosyl-L-methionin	98.77
KOG2915	314	consensus tRNA(1-methyladenosine) methyltransferas	98.76
TIGR00006	305	S-adenosyl-methyltransferase MraW. Genetics paper	98.75
PLN02781	234	Probable caffeoyl-CoA O-methyltransferase	98.75
PRK14121	390	tRNA (guanine-N(7)-)-methyltransferase; Provisiona	98.75
PRK09328	275	N5-glutamine S-adenosyl-L-methionine-dependent met	98.74
PLN02476	278	O-methyltransferase	98.74
PRK11783	702	rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi	98.74
TIGR00536	284	hemK_fam HemK family putative methylases. The gene	98.74
COG2890	280	HemK Methylase of polypeptide chain release factor	98.73
PTZ00338	294	dimethyladenosine transferase-like protein; Provis	98.72
PRK00274	272	ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1	98.72
TIGR00477	195	tehB tellurite resistance protein TehB. Part of a	98.71
TIGR02143	353	trmA_only tRNA (uracil-5-)-methyltransferase. This	98.7
PRK08317	241	hypothetical protein; Provisional	98.7
PRK15451	247	tRNA cmo(5)U34 methyltransferase; Provisional	98.7
PF02475	200	Met_10: Met-10+ like-protein; InterPro: IPR003402	98.69
PRK14896	258	ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1	98.69
COG4122	219	Predicted O-methyltransferase [General function pr	98.69
PRK14968	188	putative methyltransferase; Provisional	98.69
TIGR00438	188	rrmJ cell division protein FtsJ.	98.68
COG1041	347	Predicted DNA modification methylase [DNA replicat	98.68
PRK10258	251	biotin biosynthesis protein BioC; Provisional	98.68
PTZ00098	263	phosphoethanolamine N-methyltransferase; Provision	98.68
PRK09489	342	rsmC 16S ribosomal RNA m2G1207 methyltransferase;	98.67
PRK05031	362	tRNA (uracil-5-)-methyltransferase; Validated	98.66
TIGR00095	189	RNA methyltransferase, RsmD family. This model rep	98.65
PLN02396	322	hexaprenyldihydroxybenzoate methyltransferase	98.64
PRK14103	255	trans-aconitate 2-methyltransferase; Provisional	98.64
PF03602	183	Cons_hypoth95: Conserved hypothetical protein 95;	98.63
PF08241	95	Methyltransf_11: Methyltransferase domain; InterPr	98.62
PRK01683	258	trans-aconitate 2-methyltransferase; Provisional	98.62
PRK05785	226	hypothetical protein; Provisional	98.62
PRK06202	232	hypothetical protein; Provisional	98.61
TIGR00740	239	methyltransferase, putative. A simple BLAST search	98.6
PRK11036	255	putative S-adenosyl-L-methionine-dependent methylt	98.6
PRK04338	382	N(2),N(2)-dimethylguanosine tRNA methyltransferase	98.6
COG1092	393	Predicted SAM-dependent methyltransferases [Genera	98.6
PRK00216	239	ubiE ubiquinone/menaquinone biosynthesis methyltra	98.59
COG0781	151	NusB Transcription termination factor [Transcripti	98.59
PRK12335	287	tellurite resistance protein TehB; Provisional	98.57
TIGR03587	204	Pse_Me-ase pseudaminic acid biosynthesis-associate	98.57
TIGR02021	219	BchM-ChlM magnesium protoporphyrin O-methyltransfe	98.56
KOG2730	263	consensus Methylase [General function prediction o	98.56
PHA03412	241	putative methyltransferase; Provisional	98.55
PRK11088	272	rrmA 23S rRNA methyltransferase A; Provisional	98.54
PLN03075	296	nicotianamine synthase; Provisional	98.54
PF01596	205	Methyltransf_3: O-methyltransferase; InterPro: IPR	98.53
TIGR00755	253	ksgA dimethyladenosine transferase. Alternate name	98.53
COG0742	187	N6-adenine-specific methylase [DNA replication, re	98.52
PRK11705	383	cyclopropane fatty acyl phospholipid synthase; Pro	98.52
PLN02336	475	phosphoethanolamine N-methyltransferase	98.51
PRK11188	209	rrmJ 23S rRNA methyltransferase J; Provisional	98.51
PHA03411	279	putative methyltransferase; Provisional	98.5
PF10672	286	Methyltrans_SAM: S-adenosylmethionine-dependent me	98.48
PRK01544	506	bifunctional N5-glutamine S-adenosyl-L-methionine-	98.47
TIGR01934	223	MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis	98.44
PF03848	192	TehB: Tellurite resistance protein TehB; InterPro:	98.44
KOG2904	328	consensus Predicted methyltransferase [General fun	98.43
PRK06922	677	hypothetical protein; Provisional	98.43
COG2520	341	Predicted methyltransferase [General function pred	98.43
PLN02585	315	magnesium protoporphyrin IX methyltransferase	98.42
PF01795	310	Methyltransf_5: MraW methylase family; InterPro: I	98.41
COG0275	314	Predicted S-adenosylmethionine-dependent methyltra	98.4
TIGR00406	288	prmA ribosomal protein L11 methyltransferase. Ribo	98.4
PRK10742	250	putative methyltransferase; Provisional	98.4
TIGR02072	240	BioC biotin biosynthesis protein BioC. This enzyme	98.38
PLN02589	247	caffeoyl-CoA O-methyltransferase	98.38
PRK07580	230	Mg-protoporphyrin IX methyl transferase; Validated	98.37
KOG3420	185	consensus Predicted RNA methylase [Translation, ri	98.37
PRK15068	322	tRNA mo(5)U34 methyltransferase; Provisional	98.36
COG2227	243	UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-	98.36
PF01269	229	Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibr	98.35
PF02390	195	Methyltransf_4: Putative methyltransferase ; Inter	98.33
TIGR03438	301	probable methyltransferase. This model represents	98.3
COG0030	259	KsgA Dimethyladenosine transferase (rRNA methylati	98.3
PLN02490	340	MPBQ/MSBQ methyltransferase	98.3
COG2264	300	PrmA Ribosomal protein L11 methylase [Translation,	98.29
PRK00517	250	prmA ribosomal protein L11 methyltransferase; Revi	98.29
cd02440	107	AdoMet_MTases S-adenosylmethionine-dependent methy	98.29
PF06325	295	PrmA: Ribosomal protein L11 methyltransferase (Prm	98.26
TIGR00308	374	TRM1 tRNA(guanine-26,N2-N2) methyltransferase. Thi	98.26
COG4106	257	Tam Trans-aconitate methyltransferase [General fun	98.24
KOG2187	534	consensus tRNA uracil-5-methyltransferase and rela	98.23
TIGR03840	213	TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d	98.23
smart00828	224	PKS_MT Methyltransferase in polyketide synthase (P	98.22
TIGR02716	306	C20_methyl_CrtF C-20 methyltransferase BchU. Membe	98.18
PLN02336	475	phosphoethanolamine N-methyltransferase	98.17
PF08242	99	Methyltransf_12: Methyltransferase domain; InterPr	98.16
PRK11727	321	23S rRNA mA1618 methyltransferase; Provisional	98.15
PF02384	311	N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 T	98.15
COG0220	227	Predicted S-adenosylmethionine-dependent methyltra	98.14
COG0293	205	FtsJ 23S rRNA methylase [Translation, ribosomal st	98.14
KOG1541	270	consensus Predicted protein carboxyl methylase [Ge	98.14
PRK04457	262	spermidine synthase; Provisional	98.14
KOG1271	227	consensus Methyltransferases [General function pre	98.13
PF05401	201	NodS: Nodulation protein S (NodS); InterPro: IPR00	98.12
PLN02672	1082	methionine S-methyltransferase	98.12
TIGR00452	314	methyltransferase, putative. Known examples to dat	98.11
COG0116	381	Predicted N6-adenine-specific DNA methylase [DNA r	98.08
PRK05134	233	bifunctional 3-demethylubiquinone-9 3-methyltransf	98.08
KOG1661	237	consensus Protein-L-isoaspartate(D-aspartate) O-me	98.06
smart00138	264	MeTrc Methyltransferase, chemotaxis proteins. Meth	98.05
TIGR01983	224	UbiG ubiquinone biosynthesis O-methyltransferase.	98.05
PF07021	193	MetW: Methionine biosynthesis protein MetW; InterP	98.03
PRK13255	218	thiopurine S-methyltransferase; Reviewed	98.02
COG4076	252	Predicted RNA methylase [General function predicti	98.01
PF02527	184	GidB: rRNA small subunit methyltransferase G; Inte	98.01
PF00398	262	RrnaAD: Ribosomal RNA adenine dimethylase; InterPr	98.01
PRK00811	283	spermidine synthase; Provisional	97.96
COG0357	215	GidB Predicted S-adenosylmethionine-dependent meth	97.96
KOG0820	315	consensus Ribosomal RNA adenine dimethylase [RNA p	97.92
PRK11783	702	rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi	97.9
TIGR02081	194	metW methionine biosynthesis protein MetW. This pr	97.89
KOG1270	282	consensus Methyltransferases [Coenzyme transport a	97.87
COG1889	231	NOP1 Fibrillarin-like rRNA methylase [Translation,	97.87
KOG3191	209	consensus Predicted N6-DNA-methyltransferase [Tran	97.85
PF13489	161	Methyltransf_23: Methyltransferase domain; PDB: 3J	97.83
TIGR00478	228	tly hemolysin TlyA family protein. Hemolysins are	97.78
PRK11760	357	putative 23S rRNA C2498 ribose 2'-O-ribose methylt	97.78
PF01728	181	FtsJ: FtsJ-like methyltransferase; InterPro: IPR00	97.75
TIGR01444	143	fkbM_fam methyltransferase, FkbM family. Members o	97.73
PRK04148	134	hypothetical protein; Provisional	97.72
PRK01544	506	bifunctional N5-glutamine S-adenosyl-L-methionine-	97.64
PF13679	141	Methyltransf_32: Methyltransferase domain	97.63
PLN02366	308	spermidine synthase	97.62
PRK13256	226	thiopurine S-methyltransferase; Reviewed	97.6
PRK01581	374	speE spermidine synthase; Validated	97.6
PRK03612	521	spermidine synthase; Provisional	97.59
TIGR00417	270	speE spermidine synthase. the SpeE subunit of sper	97.58
KOG1596	317	consensus Fibrillarin and related nucleolar RNA-bi	97.57
COG0286	489	HsdM Type I restriction-modification system methyl	97.54
TIGR02987	524	met_A_Alw26 type II restriction m6 adenine DNA met	97.52
PF05185	448	PRMT5: PRMT5 arginine-N-methyltransferase; InterPr	97.51
KOG1663	237	consensus O-methyltransferase [Secondary metabolit	97.45
KOG2671	421	consensus Putative RNA methylase [Replication, rec	97.44
COG2521	287	Predicted archaeal methyltransferase [General func	97.41
KOG1499	346	consensus Protein arginine N-methyltransferase PRM	97.35
PF03291	331	Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971	97.32
KOG4300	252	consensus Predicted methyltransferase [General fun	97.27
cd00315	275	Cyt_C5_DNA_methylase Cytosine-C5 specific DNA meth	97.18
PF08123	205	DOT1: Histone methylation protein DOT1 ; InterPro:	97.17
KOG2782	303	consensus Putative SAM dependent methyltransferase	97.15
COG3963	194	Phospholipid N-methyltransferase [Lipid metabolism	97.13
PF04445	234	SAM_MT: Putative SAM-dependent methyltransferase;	97.13
PF08003	315	Methyltransf_9: Protein of unknown function (DUF16	97.12
PF01861	243	DUF43: Protein of unknown function DUF43; InterPro	97.1
KOG4589	232	consensus Cell division protein FtsJ [Cell cycle c	97.08
PF05219	265	DREV: DREV methyltransferase; InterPro: IPR007884	97.06
PF05724	218	TPMT: Thiopurine S-methyltransferase (TPMT); Inter	96.96
COG3897	218	Predicted methyltransferase [General function pred	96.94
KOG3010	261	consensus Methyltransferase [General function pred	96.86
TIGR03439	319	methyl_EasF probable methyltransferase domain, Eas	96.73
PF02005	377	TRM: N2,N2-dimethylguanosine tRNA methyltransferas	96.73
PLN02823	336	spermine synthase	96.71
KOG2361	264	consensus Predicted methyltransferase [General fun	96.68
KOG1975	389	consensus mRNA cap methyltransferase [RNA processi	96.67
PF04816	205	DUF633: Family of unknown function (DUF633) ; Inte	96.64
PF11599	246	AviRa: RRNA methyltransferase AviRa; InterPro: IPR	96.57
KOG1099	294	consensus SAM-dependent methyltransferase/cell div	96.52
KOG1500	517	consensus Protein arginine N-methyltransferase CAR	96.28
PF10294	173	Methyltransf_16: Putative methyltransferase; Inter	96.19
PLN02232	160	ubiquinone biosynthesis methyltransferase	96.18
PF05971	299	Methyltransf_10: Protein of unknown function (DUF8	96.13
PF06080	204	DUF938: Protein of unknown function (DUF938); Inte	96.12
KOG2899	288	consensus Predicted methyltransferase [General fun	96.11
PF12147	311	Methyltransf_20: Putative methyltransferase; Inter	96.03
COG1867	380	TRM1 N2,N2-dimethylguanosine tRNA methyltransferas	96.01
COG4976	287	Predicted methyltransferase (contains TPR repeat)	95.94
KOG1098	780	consensus Putative SAM-dependent rRNA methyltransf	95.85
PF00891	241	Methyltransf_2: O-methyltransferase; InterPro: IPR	95.67
PF01564	246	Spermine_synth: Spermine/spermidine synthase; Inte	95.63
PF00145	335	DNA_methylase: C-5 cytosine-specific DNA methylase	95.59
COG0421	282	SpeE Spermidine synthase [Amino acid transport and	95.58
COG1189	245	Predicted rRNA methylase [Translation, ribosomal s	95.57
PF09243	274	Rsm22: Mitochondrial small ribosomal subunit Rsm22	95.36
PHA01634	156	hypothetical protein	95.27
PF13578	106	Methyltransf_24: Methyltransferase domain; PDB: 3S	95.0
COG0500	257	SmtA SAM-dependent methyltransferases [Secondary m	94.95
KOG2078	495	consensus tRNA modification enzyme [RNA processing	94.78
TIGR00675	315	dcm DNA-methyltransferase (dcm). All proteins in t	94.62
PF03059	276	NAS: Nicotianamine synthase protein; InterPro: IPR	94.14
KOG0024	354	consensus Sorbitol dehydrogenase [Secondary metabo	94.02
PRK11524	284	putative methyltransferase; Provisional	94.0
COG1568	354	Predicted methyltransferases [General function pre	93.91
PRK10458	467	DNA cytosine methylase; Provisional	93.48
PF05891	218	Methyltransf_PK: AdoMet dependent proline di-methy	93.48
KOG3115	249	consensus Methyltransferase-like protein [General	93.46
COG2384	226	Predicted SAM-dependent methyltransferase [General	93.41
KOG1269	364	consensus SAM-dependent methyltransferases [Lipid	93.29
PF01555	231	N6_N4_Mtase: DNA methylase; InterPro: IPR002941 Th	93.29
KOG1253	525	consensus tRNA methyltransferase [Translation, rib	93.17
PF06962	140	rRNA_methylase: Putative rRNA methylase; InterPro:	93.01
COG2933	358	Predicted SAM-dependent methyltransferase [General	92.69
TIGR00497	501	hsdM type I restriction system adenine methylase (	92.5
PF04989	206	CmcI: Cephalosporin hydroxylase; InterPro: IPR0070	92.42
KOG1227	351	consensus Putative methyltransferase [General func	92.18
COG0270	328	Dcm Site-specific DNA methylase [DNA replication,	92.06
PRK13699	227	putative methylase; Provisional	92.03
PF07091	251	FmrO: Ribosomal RNA methyltransferase (FmrO); PDB:	91.68
COG4262	508	Predicted spermidine synthase with an N-terminal m	91.23
KOG1501	636	consensus Arginine N-methyltransferase [General fu	90.72
KOG2940	325	consensus Predicted methyltransferase [General fun	90.51
PF03141	506	Methyltransf_29: Putative S-adenosyl-L-methionine-	90.2
PF07279	218	DUF1442: Protein of unknown function (DUF1442); In	89.78
PF05148	219	Methyltransf_8: Hypothetical methyltransferase; In	89.73
PRK10611	287	chemotaxis methyltransferase CheR; Provisional	87.84
PLN03209	576	translocon at the inner envelope of chloroplast su	87.57
KOG2651	476	consensus rRNA adenine N-6-methyltransferase [RNA	87.02
KOG0022	375	consensus Alcohol dehydrogenase, class III [Second	86.58
PRK00536	262	speE spermidine synthase; Provisional	86.49
COG1062	366	AdhC Zn-dependent alcohol dehydrogenases, class II	86.43
COG1352	268	CheR Methylase of chemotaxis methyl-accepting prot	86.23
PF02254	116	TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg	84.46
COG1064	339	AdhP Zn-dependent alcohol dehydrogenases [General	84.27
KOG3987	288	consensus Uncharacterized conserved protein DREV/C	83.94
PF05050	167	Methyltransf_21: Methyltransferase FkbM domain; In	83.43
COG1063	350	Tdh Threonine dehydrogenase and related Zn-depende	83.38
PF01739	196	CheR: CheR methyltransferase, SAM binding domain;	81.72
cd08283	386	FDH_like_1 Glutathione-dependent formaldehyde dehy	81.52
PF05206	259	TRM13: Methyltransferase TRM13; InterPro: IPR00787	80.96

>PRK14903 16S rRNA methyltransferase B; Provisional

Probab=100.00  E-value=4.5e-50  Score=391.36  Aligned_cols=289  Identities=22%  Similarity=0.295  Sum_probs=239.5

Q ss_pred             HHHHHHHHHHHHHHccchhhh-hhhhhhhhccCCCccCHHHHHHHHHHHHhchHHHHHHHhhccccccc--ccchHHHHH
Q 019802           33 FARREAAKVLRLVLRGDARRR-AVGSIKSLVYSPSVKNKKATYALVCQTLKHLSIIKQVLDSASILNSK--WKRQEELVY  109 (335)
Q Consensus        33 ~aR~~A~~iL~~v~~~~~~~~-~l~~~~~~~~~~~~~dr~l~~~LV~gvlR~~~~LD~il~~~~ll~~~--~~~~~~lLr  109 (335)
                      ++|.+|+++|.+|+.++.+.+ .+..  .+. .++.+|++|+++|||||+|++..||++|++  +++++  ....+.+||
T Consensus         4 ~~R~~A~~~L~~v~~~~~~~~~~l~~--~~~-~l~~~d~~~~~~lv~gvlr~~~~lD~~i~~--~~~~~~l~~~~r~iLr   78 (431)
T PRK14903          4 NVRLLAYRLLRKYEKEKFIFREDVDS--VLS-FLDDKDRRFFKELVWGVVRKEELLDWYINQ--LLKKKDIPPAVRVALR   78 (431)
T ss_pred             CHHHHHHHHHHHHHhCCCchHHHHHH--HHH-hCCHHHHHHHHHHHHHHHHHHHHHHHHHHH--HhcCCCCCHHHHHHHH
Confidence            479999999999998776654 3332  222 467789999999999999999999999998  45543  224589999


Q ss_pred             HHHHHHHhcCCCCchhHHHHHHHHhhhh----H-------------------HHHHHHHHHHccCCC--HHHHHHhhcCC
Q 019802          110 ILTYDILFGQEISLVGDAEKFLMLHKGA----I-------------------QLALAQLLVRNKVKS--IEDLMALYQTP  164 (335)
Q Consensus       110 l~lyqllf~~~iP~~a~v~~~v~~~k~~----~-------------------~~~l~~~~~~~~~~~--~~~~~~~~~~~  164 (335)
                      +|+|||+|++.+|+++++++.|+..|..    +                   .++++.|+.+++...  .++..++++++
T Consensus        79 ~~~yel~~~~~~p~~aavneaV~lak~~~~~~fVNaVLr~~~r~~~~~~l~~~~s~P~wl~~~~~~~~g~~~~~~~~~~~  158 (431)
T PRK14903         79 MGAYQLLFMNSVPDYAAVSETVKLVKNENFKKLVNAVLRRLRTVPEPKELHLKYSHPKWLVNYWRSFLPEEAVLRIMEWN  158 (431)
T ss_pred             HHHHHHHhccCCCcceeHHHHHHHHhccchHHHHHHHHHHHHHhhcchhhhhhhcCcHHHHHHHHHHcCHHHHHHHHHHh
Confidence            9999999998679999888887665421    1                   123455555444321  13333455677


Q ss_pred             CCCCCceEEEcCCCCCHHHHHHHHcc-cccccccCCCCCeEEeCC-CCCCCCCcccccceEEecCchHHHHHHHcCCCCC
Q 019802          165 DVPKPRYVRVNTLKMDVDSAVLELGK-QFVVQKDDLVPDLLILPP-GCDLHVHPLIVNGCVFLQGKASSMVAAALAPKPG  242 (335)
Q Consensus       165 ~~~~p~~lRvN~~k~~~~~~~~~L~~-~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~g~~~iQd~~s~l~~~~l~~~~g  242 (335)
                      +.+||+++|||++|++++++.+.|++ |+.+++++++|+++.+.. ..++..++.|.+|++++||.+||+++.++++++|
T Consensus       159 ~~~~~~~~RvN~~k~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~Qd~~s~~~~~~l~~~~g  238 (431)
T PRK14903        159 QEPLPTMLRVNSLAITREEVIKILAEEGTEAVPGKHSPFSLIVRKLGVNMNDSRVIKDGLATVQGESSQIVPLLMELEPG  238 (431)
T ss_pred             cCCCCeeEEeeCCcCCHHHHHHHHHHCCCeeEECCCCCceEEEcCCCCCcccChHHHCCeEEEECHHHHHHHHHhCCCCC
Confidence            88999999999999999999999976 888888899999998875 4568889999999999999999999999999999


Q ss_pred             CEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCC-CCCCCCceEEEEEEec
Q 019802          243 WKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLD-PKDPAYSEVSLIFCIF  321 (335)
Q Consensus       243 ~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~-~~~~~fd~V~~IllD~  321 (335)
                      ++|||+|||||+||+|+++++++.++|+|+|++++|++.+++|++++|+.+++++++|+..++ .....||.   |++|+
T Consensus       239 ~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~~v~~~~~Da~~l~~~~~~~fD~---Vl~Da  315 (431)
T PRK14903        239 LRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLSSIEIKIADAERLTEYVQDTFDR---ILVDA  315 (431)
T ss_pred             CEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhhhhhhhhccCCE---EEECC
Confidence            999999999999999999999888999999999999999999999999999999999998876 23456775   99999


Q ss_pred             cccccccc
Q 019802          322 TWMIIMFH  329 (335)
Q Consensus       322 ~cs~~g~~  329 (335)
                      ||||+|+.
T Consensus       316 PCsg~G~~  323 (431)
T PRK14903        316 PCTSLGTA  323 (431)
T ss_pred             CCCCCccc
Confidence            99999984

>PRK14901 16S rRNA methyltransferase B; Provisional

Probab=100.00  E-value=6.8e-49  Score=384.42  Aligned_cols=290  Identities=22%  Similarity=0.281  Sum_probs=236.8

Q ss_pred             HHHHHHHHHHHHHHccchhhh-hhhhhhhhccCCCccCHHHHHHHHHHHHhchHHHHHHHhhcccccccc----cchHHH
Q 019802           33 FARREAAKVLRLVLRGDARRR-AVGSIKSLVYSPSVKNKKATYALVCQTLKHLSIIKQVLDSASILNSKW----KRQEEL  107 (335)
Q Consensus        33 ~aR~~A~~iL~~v~~~~~~~~-~l~~~~~~~~~~~~~dr~l~~~LV~gvlR~~~~LD~il~~~~ll~~~~----~~~~~l  107 (335)
                      ++|+.|+++|.+++.+ .+.+ ++..... ...++.+||+|+++|||||+|++..||++|++  +++.+.    ...+.+
T Consensus         2 ~~R~~A~~~L~~i~~~-~~~~~~l~~~~~-~~~l~~~dr~~~~~lv~gvlr~~~~lD~~i~~--~~~~~~~~l~~~~r~i   77 (434)
T PRK14901          2 NARQLAWEILQAVARG-AYADVALERVLR-KYPLSGADRALVTELVYGCIRRRRTLDAWIDQ--LGKKPAHKQPPDLRWL   77 (434)
T ss_pred             CHHHHHHHHHHHHHcC-CchHHHHHHHHH-hcCCChhHHHHHHHHHHHHHHhHHHHHHHHHH--hcCCChhhcCHHHHHH
Confidence            4799999999999884 4443 3332111 13456689999999999999999999999998  444332    235789


Q ss_pred             HHHHHHHHHhcCCCCchhHHHHHHHHhhhh-------H------------------------------HHHHHHHHHHcc
Q 019802          108 VYILTYDILFGQEISLVGDAEKFLMLHKGA-------I------------------------------QLALAQLLVRNK  150 (335)
Q Consensus       108 Lrl~lyqllf~~~iP~~a~v~~~v~~~k~~-------~------------------------------~~~l~~~~~~~~  150 (335)
                      ||+|+|||+|++++|+++++++.|+..|..       +                              .++++.|+.+++
T Consensus        78 Lrla~yel~~~~~~p~~aavneaVelak~~~~~~~~~fVNgVLr~~~r~~~~~~~~~~~~~~~~~l~~~~s~P~wl~~~~  157 (434)
T PRK14901         78 LHLGLYQLRYMDRIPASAAVNTTVELAKQNGLGGLAGVVNGILRQYLRAREAGDPLPLPEDPIERLAILHSFPDWLVKLW  157 (434)
T ss_pred             HHHHHHHHHhCccCCcHHHHHHHHHHHHHcCchhhhhhcCHHHHHHHHhhhccccccCCcChHHHHHHHhCCcHHHHHHH
Confidence            999999999999899999888877554310       0                              123455655544


Q ss_pred             CCC--HHHHHHhhcCCCCCCCceEEEcCCCCCHHHHHHHHcc-cccccccCCCCCeEEeCCC-CCCCCCcccccceEEec
Q 019802          151 VKS--IEDLMALYQTPDVPKPRYVRVNTLKMDVDSAVLELGK-QFVVQKDDLVPDLLILPPG-CDLHVHPLIVNGCVFLQ  226 (335)
Q Consensus       151 ~~~--~~~~~~~~~~~~~~~p~~lRvN~~k~~~~~~~~~L~~-~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~g~~~iQ  226 (335)
                      ...  .+++.+++++++.+||+++|||++|++++++.+.|++ |+.+++.+++|+++.+... ..+..+++|.+|++++|
T Consensus       158 ~~~~g~~~~~~~~~~~~~~~~~~~Rvn~~k~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~g~~~~q  237 (434)
T PRK14901        158 LEWLGLEEAEQLCKWFNQPPSLDLRINPLRTSLEEVQAALAEAGITATPIPGLPQGLRLTGNPGSIRQLPGYEEGWWTVQ  237 (434)
T ss_pred             HHHhCHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHCCCceEECCCCCCeEEecCCCCccccChHHhCCeEEEE
Confidence            322  1233345567788999999999999999999999977 8888888999999999753 35888999999999999


Q ss_pred             CchHHHHHHHcCCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCC-
Q 019802          227 GKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLD-  305 (335)
Q Consensus       227 d~~s~l~~~~l~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~-  305 (335)
                      |.+|++++..+++++|++|||+|||||+||+++++++++.|+|+|+|++++|++.+++|++++|+.||+++++|+.+++ 
T Consensus       238 d~~s~l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~~v~~~~~D~~~~~~  317 (434)
T PRK14901        238 DRSAQLVAPLLDPQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLKSIKILAADSRNLLE  317 (434)
T ss_pred             CHHHHHHHHHhCCCCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCeEEEEeCChhhccc
Confidence            9999999999999999999999999999999999999888999999999999999999999999999999999998876 


Q ss_pred             ---CCCCCCceEEEEEEeccccccccc
Q 019802          306 ---PKDPAYSEVSLIFCIFTWMIIMFH  329 (335)
Q Consensus       306 ---~~~~~fd~V~~IllD~~cs~~g~~  329 (335)
                         ...++||.   |++|+||||+|+.
T Consensus       318 ~~~~~~~~fD~---Vl~DaPCSg~G~~  341 (434)
T PRK14901        318 LKPQWRGYFDR---ILLDAPCSGLGTL  341 (434)
T ss_pred             ccccccccCCE---EEEeCCCCccccc
Confidence               22346764   9999999999983

>PRK10901 16S rRNA methyltransferase B; Provisional

Probab=100.00  E-value=2.3e-46  Score=365.85  Aligned_cols=287  Identities=22%  Similarity=0.306  Sum_probs=236.1

Q ss_pred             hHHHHHHHHHHHHHHccchhhh-hhhhhhhhccCCCccCHHHHHHHHHHHHhchHHHHHHHhhccccccccc----chHH
Q 019802           32 YFARREAAKVLRLVLRGDARRR-AVGSIKSLVYSPSVKNKKATYALVCQTLKHLSIIKQVLDSASILNSKWK----RQEE  106 (335)
Q Consensus        32 ~~aR~~A~~iL~~v~~~~~~~~-~l~~~~~~~~~~~~~dr~l~~~LV~gvlR~~~~LD~il~~~~ll~~~~~----~~~~  106 (335)
                      |++|+.|+++|.+++.++.+.+ .+...  + ..++.+|++|+++|||||+||+..||++|.+  +++.+..    ..+.
T Consensus         2 ~~~R~~a~~~L~~~~~~~~~~~~~l~~~--~-~~l~~~d~~~~~~lv~gv~r~~~~lD~~i~~--~~~~~~~~l~~~~r~   76 (427)
T PRK10901          2 MNLRALAAAAILQVVDQGQSLSAALPAL--Q-QKVSDKDRALLQELCYGVLRRLPRLEWLIAQ--LLAKPLKGKQRIVHA   76 (427)
T ss_pred             chHHHHHHHHHHHHHHcCCcHHHHHHHH--H-hhCCHHHHHHHHHHHHHHHHhHHHHHHHHHH--HhCCCccccCHHHHH
Confidence            5789999999999988776554 33321  1 1345689999999999999999999999998  4554322    2478


Q ss_pred             HHHHHHHHHHhcCCCCchhHHHHHHHHhhh-------hH-------------------------HHHHHHHHHHccCCC-
Q 019802          107 LVYILTYDILFGQEISLVGDAEKFLMLHKG-------AI-------------------------QLALAQLLVRNKVKS-  153 (335)
Q Consensus       107 lLrl~lyqllf~~~iP~~a~v~~~v~~~k~-------~~-------------------------~~~l~~~~~~~~~~~-  153 (335)
                      +||||+|||+|++ +|+++++++.|+..|.       .+                         .++++.|+.+++... 
T Consensus        77 iLrla~yell~~~-iP~~a~vneaVelak~~~~~~~~~fVNaVLr~i~~~~~~~~~~~~~~~~~~~s~P~wl~~~~~~~~  155 (427)
T PRK10901         77 LLLVGLYQLLYTR-IPAHAAVDETVEAAKALKRPWAKGLVNAVLRRFQREQEELLAELQADPVARYNHPSWLIKRLKKAY  155 (427)
T ss_pred             HHHHHHHHHhccC-CCcchHHHHHHHHHHhcCCccchhhHHHHHHHhhhhhhhhhhhhhhchHhHhcCCHHHHHHHHHHh
Confidence            9999999999998 9999998888765431       01                         123455665554332 


Q ss_pred             HHHHHHhhcCCCCCCCceEEEcCCCCCHHHHHHHHcc-cccccccCCCCCeEEeCCCCCCCCCcccccceEEecCchHHH
Q 019802          154 IEDLMALYQTPDVPKPRYVRVNTLKMDVDSAVLELGK-QFVVQKDDLVPDLLILPPGCDLHVHPLIVNGCVFLQGKASSM  232 (335)
Q Consensus       154 ~~~~~~~~~~~~~~~p~~lRvN~~k~~~~~~~~~L~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~iQd~~s~l  232 (335)
                      .+++.+++++.+.++|+|+|||++|++++++.+.|++ |+..++++++|+++.+..+..+..+++|++|++++||.+|++
T Consensus       156 ~~~~~~~~~~~~~~~~~~~Rvn~~k~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~iQd~~s~~  235 (427)
T PRK10901        156 PEQWQAILAANNQRPPMWLRVNRRHHSRDAYLALLAEAGIEAFPHAVGPDAIRLETPVPVHQLPGFAEGWVSVQDAAAQL  235 (427)
T ss_pred             HHHHHHHHHHcCCCCCeEEEEcCCCCCHHHHHHHHHhCCCceeecCCCCCeEEECCCCCcccCchhhCceEEEECHHHHH
Confidence            2334456667788999999999999999999999976 788888889999999987667889999999999999999999


Q ss_pred             HHHHcCCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCC--CCCC
Q 019802          233 VAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDP--KDPA  310 (335)
Q Consensus       233 ~~~~l~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~~--~~~~  310 (335)
                      ++..+++++|++|||+|||||++|.++++++++ ++|+++|+++.|++.+++|++++|+. +.++++|+.+++.  ...+
T Consensus       236 ~~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~-~~v~a~D~s~~~l~~~~~n~~~~g~~-~~~~~~D~~~~~~~~~~~~  313 (427)
T PRK10901        236 AATLLAPQNGERVLDACAAPGGKTAHILELAPQ-AQVVALDIDAQRLERVRENLQRLGLK-ATVIVGDARDPAQWWDGQP  313 (427)
T ss_pred             HHHHcCCCCCCEEEEeCCCCChHHHHHHHHcCC-CEEEEEeCCHHHHHHHHHHHHHcCCC-eEEEEcCcccchhhcccCC
Confidence            999999999999999999999999999999754 89999999999999999999999985 7899999987643  2345


Q ss_pred             CceEEEEEEeccccccccc
Q 019802          311 YSEVSLIFCIFTWMIIMFH  329 (335)
Q Consensus       311 fd~V~~IllD~~cs~~g~~  329 (335)
                      ||.   |++|+|||++|+.
T Consensus       314 fD~---Vl~D~Pcs~~G~~  329 (427)
T PRK10901        314 FDR---ILLDAPCSATGVI  329 (427)
T ss_pred             CCE---EEECCCCCccccc
Confidence            775   9999999999973

>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB

Probab=100.00  E-value=1.7e-45  Score=359.73  Aligned_cols=284  Identities=21%  Similarity=0.275  Sum_probs=225.2

Q ss_pred             HHHHHHHHHHHHccchhhhhhhhhhhhccCCCccCHHHHHHHHHHHHhchHHHHHHHhhcccccccccc---hHHHHHHH
Q 019802           35 RREAAKVLRLVLRGDARRRAVGSIKSLVYSPSVKNKKATYALVCQTLKHLSIIKQVLDSASILNSKWKR---QEELVYIL  111 (335)
Q Consensus        35 R~~A~~iL~~v~~~~~~~~~l~~~~~~~~~~~~~dr~l~~~LV~gvlR~~~~LD~il~~~~ll~~~~~~---~~~lLrl~  111 (335)
                      |+.|+++|+++..++.+++.....   ...++.+|++|+++|||||+||+..||++|++  +++.+++.   ...+|+++
T Consensus         1 R~~A~~~L~~~~~~~~~~~~~~~~---~~~l~~~d~~~~~~lv~gv~r~~~~lD~~i~~--~~~~~~~~l~~~~~~L~~~   75 (426)
T TIGR00563         1 RSIAAQALEQLEQGQSLSNLLPPL---QQKVSDQDRALLQELCFGVLRTLSQLDWLIKK--LMDRPMKGKPRTVHYLILV   75 (426)
T ss_pred             CHHHHHHHHHHHcCCchHHHHHhh---hcCCCHHHHHHHHHHHHHHHHhHHHHHHHHHH--HhCCCccccCHHHHHHHHH
Confidence            788999999998887776643321   23456689999999999999999999999998  45544322   12367777


Q ss_pred             HHHHHhcCCCCchhHHHHHHHHhhh-------hHHH------------------------HHHHHHHHccCC-CHHHHHH
Q 019802          112 TYDILFGQEISLVGDAEKFLMLHKG-------AIQL------------------------ALAQLLVRNKVK-SIEDLMA  159 (335)
Q Consensus       112 lyqllf~~~iP~~a~v~~~v~~~k~-------~~~~------------------------~l~~~~~~~~~~-~~~~~~~  159 (335)
                      +|+++|..++|++++++++|+..|.       .+.+                        ++|.|+.+++.. ..+++.+
T Consensus        76 ~~e~l~~~~~p~~aainEaVelaK~~~~~~~~~fVNgVLr~i~r~~~~~~~~~~~l~~~~s~P~wl~~~~~~~~~~~~~~  155 (426)
T TIGR00563        76 GLYQLLYTRIPAHAAVAETVEGAKAIKRKGLKGLVNGVLRRFQREQEELLAEFNALDARYLHPEWLVKRLQKAYPGQWQS  155 (426)
T ss_pred             HHHHHhcCCCCCEehHHHHHHHHHhcCCccchhhHHHHHHHHhhcchhhcchhHhHHHHcCCCHHHHHHHHHHhHHHHHH
Confidence            7776665559999998888766532       1122                        233444443221 1233334


Q ss_pred             hhcCCCCCCCceEEEcCCCCCHHHHHHHHcc-cccccccCCCCCeEEeCCCCCCCCCcccccceEEecCchHHHHHHHcC
Q 019802          160 LYQTPDVPKPRYVRVNTLKMDVDSAVLELGK-QFVVQKDDLVPDLLILPPGCDLHVHPLIVNGCVFLQGKASSMVAAALA  238 (335)
Q Consensus       160 ~~~~~~~~~p~~lRvN~~k~~~~~~~~~L~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~iQd~~s~l~~~~l~  238 (335)
                      ++++++.+||+|+|||++|++++++.+.|++ |+.+++++++|+++.+..+..+..++.|++|+|++||.+|++++..++
T Consensus       156 ~l~~~~~~~~~~~Rvn~~k~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~Qd~~s~~~~~~L~  235 (426)
T TIGR00563       156 ICEANNQRPPMWLRINRTKHSRDEWLALLAEAGMKGFPHDLAPDAVRLETPAAVHALPGFEEGWVTVQDASAQWVATWLA  235 (426)
T ss_pred             HHHHhCCCCCeEEEEcCCcCCHHHHHHHHHhcCCceeeCCCCCCeEEECCCCCcccCchhhCCeEEEECHHHHHHHHHhC
Confidence            5566788999999999999999999999987 788888899999999976667889999999999999999999999999


Q ss_pred             CCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEE--EeccCCCCCC--CCCCCceE
Q 019802          239 PKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEV--LHGDFLNLDP--KDPAYSEV  314 (335)
Q Consensus       239 ~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~--~~~D~~~~~~--~~~~fd~V  314 (335)
                      +++|++|||+|||||+||++++++++ +++|+|+|++++|++.+++|++++|+. +.+  ..+|...++.  ...+||. 
T Consensus       236 ~~~g~~VLDlcag~G~kt~~la~~~~-~~~v~a~D~~~~~l~~~~~n~~r~g~~-~~v~~~~~d~~~~~~~~~~~~fD~-  312 (426)
T TIGR00563       236 PQNEETILDACAAPGGKTTHILELAP-QAQVVALDIHEHRLKRVYENLKRLGLT-IKAETKDGDGRGPSQWAENEQFDR-  312 (426)
T ss_pred             CCCCCeEEEeCCCccHHHHHHHHHcC-CCeEEEEeCCHHHHHHHHHHHHHcCCC-eEEEEeccccccccccccccccCE-
Confidence            99999999999999999999999986 689999999999999999999999987 444  6677665543  3456774 


Q ss_pred             EEEEEecccccccc
Q 019802          315 SLIFCIFTWMIIMF  328 (335)
Q Consensus       315 ~~IllD~~cs~~g~  328 (335)
                        |++|+||||+|+
T Consensus       313 --VllDaPcSg~G~  324 (426)
T TIGR00563       313 --ILLDAPCSATGV  324 (426)
T ss_pred             --EEEcCCCCCCcc
Confidence              999999999998

The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.

>PRK14902 16S rRNA methyltransferase B; Provisional

Probab=100.00  E-value=1.6e-44  Score=354.80  Aligned_cols=291  Identities=25%  Similarity=0.330  Sum_probs=236.6

Q ss_pred             hHHHHHHHHHHHHHHccchhhh-hhhhhhhhccCCCccCHHHHHHHHHHHHhchHHHHHHHhhccccccc---ccchHHH
Q 019802           32 YFARREAAKVLRLVLRGDARRR-AVGSIKSLVYSPSVKNKKATYALVCQTLKHLSIIKQVLDSASILNSK---WKRQEEL  107 (335)
Q Consensus        32 ~~aR~~A~~iL~~v~~~~~~~~-~l~~~~~~~~~~~~~dr~l~~~LV~gvlR~~~~LD~il~~~~ll~~~---~~~~~~l  107 (335)
                      |++|+.|+++|++++.++.+.+ .+..... ...++.+|++++++|||||+|++..||++|++.  ++..   ....+.+
T Consensus         3 ~~~R~~A~~~L~~~~~~~~~~~~~l~~~~~-~~~l~~~d~~~~~~lv~g~lr~~~~ld~~i~~~--~~~~~~l~~~~r~i   79 (444)
T PRK14902          3 MNARELALEVLIKVENNGAYSNIALNKVLK-KSELSDKDKALLTELVYGTIQRKLTLDYYLAPF--IKKRKKLDPWVRNL   79 (444)
T ss_pred             ccHHHHHHHHHHHHHhcCCCHHHHHHHHHH-hcCCChHHHHHHHHHHHHHHHhHHHHHHHHHHH--hhhhhhCCHHHHHH
Confidence            4789999999999988665543 3332211 134566899999999999999999999999984  5431   1235789


Q ss_pred             HHHHHHHHHhcCCCCchhHHHHHHHHhhh-------hH----------------------------HHHHHHHHHHccCC
Q 019802          108 VYILTYDILFGQEISLVGDAEKFLMLHKG-------AI----------------------------QLALAQLLVRNKVK  152 (335)
Q Consensus       108 Lrl~lyqllf~~~iP~~a~v~~~v~~~k~-------~~----------------------------~~~l~~~~~~~~~~  152 (335)
                      ||+|+|||+|++.+|.+++++++|+..|.       .+                            .++++.|+.+++..
T Consensus        80 Lrla~~el~~~~~~p~~~~ineav~lak~~~~~~~~~fVNaVL~~i~~~~~~~~~~~~~~~~~~~~~~~~P~w~~~~~~~  159 (444)
T PRK14902         80 LRMSLYQLLYLDKVPDHAAVNEAVEIAKKRGHKGIAKFVNGVLRNILREGLPDIDEIKDPVKRLSIKYSHPVWLVKRWID  159 (444)
T ss_pred             HHHHHHHHHhccCCCCceeHHHHHHHHHHhCCCchhHHHHHHHHHHhhccccccccccCHHHHHHHHhCChHHHHHHHHH
Confidence            99999999999889999888877755431       01                            12345565554433


Q ss_pred             CH--HHHHHhhcCCCCCCCceEEEcCCCCCHHHHHHHHcc-cccccccCCCCCeEEeCCCCCCCCCcccccceEEecCch
Q 019802          153 SI--EDLMALYQTPDVPKPRYVRVNTLKMDVDSAVLELGK-QFVVQKDDLVPDLLILPPGCDLHVHPLIVNGCVFLQGKA  229 (335)
Q Consensus       153 ~~--~~~~~~~~~~~~~~p~~lRvN~~k~~~~~~~~~L~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~iQd~~  229 (335)
                      ..  +++.+++++++.++|+|+|||+.|++++++.+.|++ |+.++++++.|+++.+++ ..+..+++|.+|.+++||.+
T Consensus       160 ~~g~~~~~~~l~~~~~~~~~~~Rvn~~k~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~G~~~~qd~~  238 (444)
T PRK14902        160 QYGEEKAEKILESLNEPPKASIRVNTLKISVEELIEKLEEEGYEVEESLLSPEALVIEK-GNIAGTDLFKDGLITIQDES  238 (444)
T ss_pred             HhCHHHHHHHHHHcCCCCCeEEEEcCCCCCHHHHHHHHHHcCceeEEcCCCCCeEEEeC-CCcccChHHhCceEEEEChH
Confidence            21  223335567788999999999999999999998876 788888899999999976 56899999999999999999


Q ss_pred             HHHHHHHcCCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCC-C
Q 019802          230 SSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPK-D  308 (335)
Q Consensus       230 s~l~~~~l~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~~~-~  308 (335)
                      |++++..+++++|++|||+|||||++|.++++.+++.++|+|+|+++.+++.+++|+++.|+.+|+++++|+.++... .
T Consensus       239 s~lv~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~  318 (444)
T PRK14902        239 SMLVAPALDPKGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLTNIETKALDARKVHEKFA  318 (444)
T ss_pred             HHHHHHHhCCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCCcccccchhc
Confidence            999999999999999999999999999999999877899999999999999999999999998999999999886422 2


Q ss_pred             CCCceEEEEEEeccccccccc
Q 019802          309 PAYSEVSLIFCIFTWMIIMFH  329 (335)
Q Consensus       309 ~~fd~V~~IllD~~cs~~g~~  329 (335)
                      ..||   .|++|+||||+|+.
T Consensus       319 ~~fD---~Vl~D~Pcsg~G~~  336 (444)
T PRK14902        319 EKFD---KILVDAPCSGLGVI  336 (444)
T ss_pred             ccCC---EEEEcCCCCCCeee
Confidence            4566   49999999999974

>PRK14904 16S rRNA methyltransferase B; Provisional

Probab=100.00  E-value=6.3e-44  Score=350.39  Aligned_cols=288  Identities=19%  Similarity=0.272  Sum_probs=226.3

Q ss_pred             hHHHHHHHHHHHHHHccchhhh-hhhhhhhhccCCCccCHHHHHHHHHHHHhchHHHHHHHhhccccccccc----chHH
Q 019802           32 YFARREAAKVLRLVLRGDARRR-AVGSIKSLVYSPSVKNKKATYALVCQTLKHLSIIKQVLDSASILNSKWK----RQEE  106 (335)
Q Consensus        32 ~~aR~~A~~iL~~v~~~~~~~~-~l~~~~~~~~~~~~~dr~l~~~LV~gvlR~~~~LD~il~~~~ll~~~~~----~~~~  106 (335)
                      |++|+.|+++|.+++.++.+++ ++..... ...++.+|++|+++|||||+|++..||++|++  +++.++.    ..++
T Consensus         2 ~~~R~~A~~~L~~~~~~~~~~~~~l~~~~~-~~~l~~~dr~~~~~lv~gvlr~~~~lD~~i~~--~~~~~~~rl~~~~r~   78 (445)
T PRK14904          2 MTARELALQVLQELETGERKSDTLLHRMLE-RSSLERNDRALATELVNGVLRYRLQLDFIISR--FYHHDLEKAAPVLKN   78 (445)
T ss_pred             chHHHHHHHHHHHHHhcCCCHHHHHHHHHH-hcCCChHHHHHHHHHHHHHHHHHHHHHHHHHH--HcCCChhhCCHHHHH
Confidence            5789999999999988776654 3332111 13456689999999999999999999999998  4543322    3578


Q ss_pred             HHHHHHHHHHhcCCCCchhHHHHHHHHhhh-------h------------------------------HHHHHHHHHHHc
Q 019802          107 LVYILTYDILFGQEISLVGDAEKFLMLHKG-------A------------------------------IQLALAQLLVRN  149 (335)
Q Consensus       107 lLrl~lyqllf~~~iP~~a~v~~~v~~~k~-------~------------------------------~~~~l~~~~~~~  149 (335)
                      +||+|+|||+|++.+|.++++++.|+..|.       .                              ..++++.|+.++
T Consensus        79 iLrla~~ell~~~~~p~~a~vneaVelak~~~~~~~~~fVNgVLr~i~~~~~~~~~~~~~~~~~~~l~~~~s~P~wl~~~  158 (445)
T PRK14904         79 ILRLGVYQLLFLDRVPRWAAVNECVKLARKYKGEHMAKLVNGVLRNISPETISLDEWLKGMPEAERLSLLYSHPEWLLER  158 (445)
T ss_pred             HHHHHHHHHHhCCCCCCeeeHHHHHHHHHHhCCCccccchHHHHHHHHHhhccccccccccchHHHHHHHhCCCHHHHHH
Confidence            999999999999889999888777654321       0                              012345566554


Q ss_pred             cCCCH--HHHHHhhcCCCCCCCceEEEcCCCCCHHHHHHHHcc-cccccccCCCCCeEEeCCCCCCCCCcccccceEEec
Q 019802          150 KVKSI--EDLMALYQTPDVPKPRYVRVNTLKMDVDSAVLELGK-QFVVQKDDLVPDLLILPPGCDLHVHPLIVNGCVFLQ  226 (335)
Q Consensus       150 ~~~~~--~~~~~~~~~~~~~~p~~lRvN~~k~~~~~~~~~L~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~iQ  226 (335)
                      +....  ++..++++..+.+||+|+|||+++++++++.+.|+. ++.+++.++ + ++.+... .....++|.+|.+++|
T Consensus       159 ~~~~~g~~~~~~~~~~~~~~~~~~~Rvn~~~~~~~~~~~~l~~~~~~~~~~~~-~-~~~~~~~-~~~~~~~~~~G~~~vq  235 (445)
T PRK14904        159 WIARYGEERTEAMLSYNNQAPLFGFRINRLKTTPEKFLAAPADASVTFEKSGL-P-NFFLSKD-FSLFEPFLKLGLVSVQ  235 (445)
T ss_pred             HHHHhChHHHHHHHHHhCCCCCceeEeCCCCCCHHHHHHHHHhCCCceEEcCc-c-eEEEecc-ccccChHHhCcEEEEe
Confidence            43321  222334556777999999999999999999998876 776655543 3 4455432 2223389999999999


Q ss_pred             CchHHHHHHHcCCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCC
Q 019802          227 GKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDP  306 (335)
Q Consensus       227 d~~s~l~~~~l~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~~  306 (335)
                      |++|++++..+++.+|++|||+|||||+||.++++.+++.++|+|+|+++.|++.+++|++++|+.+|+++++|+..+.+
T Consensus       236 d~~s~l~~~~l~~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~v~~~~~Da~~~~~  315 (445)
T PRK14904        236 NPTQALACLLLNPQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGITIIETIEGDARSFSP  315 (445)
T ss_pred             CHHHHHHHHhcCCCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCCCeEEEEeCccccccc
Confidence            99999999999999999999999999999999999988788999999999999999999999999999999999988763


Q ss_pred             CCCCCceEEEEEEeccccccccc
Q 019802          307 KDPAYSEVSLIFCIFTWMIIMFH  329 (335)
Q Consensus       307 ~~~~fd~V~~IllD~~cs~~g~~  329 (335)
                       +..||.   |++|+||||+|+.
T Consensus       316 -~~~fD~---Vl~D~Pcsg~g~~  334 (445)
T PRK14904        316 -EEQPDA---ILLDAPCTGTGVL  334 (445)
T ss_pred             -CCCCCE---EEEcCCCCCcchh
Confidence             346875   8999999999983

>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=4.3e-36  Score=285.85  Aligned_cols=170  Identities=32%  Similarity=0.468  Sum_probs=148.7

Q ss_pred             HHHhhcCCCCCCCceEEEcCCCCCHHHHHHHHcc-cccccccCCCCCeEEeCCCCCCCCCcccccceEEecCchHHHHHH
Q 019802          157 LMALYQTPDVPKPRYVRVNTLKMDVDSAVLELGK-QFVVQKDDLVPDLLILPPGCDLHVHPLIVNGCVFLQGKASSMVAA  235 (335)
Q Consensus       157 ~~~~~~~~~~~~p~~lRvN~~k~~~~~~~~~L~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~iQd~~s~l~~~  235 (335)
                      +..++.+++.++|+++|||+++.+.+++.+.|+. ++...+....+.++.+....++..+++|.+|+|++||.+||+++.
T Consensus        71 ~~~~~~a~~~~~~~~~Rvn~lk~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~G~~~vQd~sS~l~a~  150 (355)
T COG0144          71 AEAIAAALLRPPPRSLRVNTLKADVEELLEALEEAGVLDEKPWVLDEVLRIEASGPIGRLPEFAEGLIYVQDEASQLPAL  150 (355)
T ss_pred             HHHHHHHcCCCCCeeEEEcCccCCHHHHHHHHhhcccccccCCccccEEEecCCCCcccChhhhceEEEEcCHHHHHHHH
Confidence            3344456677889999999999999999999987 555554445567888888888999999999999999999999999


Q ss_pred             HcCCCCCCEEEEEcCCCchHHHHHHHHcCCCeEE-EEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCC---CC
Q 019802          236 ALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKI-VACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDP---AY  311 (335)
Q Consensus       236 ~l~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i-~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~~~~~---~f  311 (335)
                      +|+|+||++|||+||||||||+||+++|.+.|.+ +|+|++++|++.+++|++|+|+.|+.+++.|+..++....   .|
T Consensus       151 ~L~p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~nv~~~~~d~~~~~~~~~~~~~f  230 (355)
T COG0144         151 VLDPKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVRNVIVVNKDARRLAELLPGGEKF  230 (355)
T ss_pred             HcCCCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCCceEEEecccccccccccccCcC
Confidence            9999999999999999999999999999986655 9999999999999999999999999999999987654322   36


Q ss_pred             ceEEEEEEeccccccccc
Q 019802          312 SEVSLIFCIFTWMIIMFH  329 (335)
Q Consensus       312 d~V~~IllD~~cs~~g~~  329 (335)
                      |+   ||||+||||+|+.
T Consensus       231 D~---iLlDaPCSg~G~i  245 (355)
T COG0144         231 DR---ILLDAPCSGTGVI  245 (355)
T ss_pred             cE---EEECCCCCCCccc
Confidence            65   9999999999995

>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed

Probab=100.00  E-value=4.9e-36  Score=293.15  Aligned_cols=169  Identities=25%  Similarity=0.276  Sum_probs=151.2

Q ss_pred             HHhhcCCCCCCCceEEEcCCCCCHHHHHHHHcc-cccccccCCCCCeEEeCCC----CCCCCCcccccceEEecCchHHH
Q 019802          158 MALYQTPDVPKPRYVRVNTLKMDVDSAVLELGK-QFVVQKDDLVPDLLILPPG----CDLHVHPLIVNGCVFLQGKASSM  232 (335)
Q Consensus       158 ~~~~~~~~~~~p~~lRvN~~k~~~~~~~~~L~~-~~~~~~~~~~~~~l~~~~~----~~~~~~~~~~~g~~~iQd~~s~l  232 (335)
                      .+++++.+.++|.++|||++|++.+++.+.|++ ++.+++.+++++++.+...    ..+..++.|..|.|++||++||+
T Consensus        23 ~~~l~a~~~~~~~~lRvN~lK~~~~~~~~~L~~~g~~~~~~p~~~~g~~~~~~~~~~~~~~~~~~~~~G~~yvQd~sS~l  102 (470)
T PRK11933         23 DDFIAACQRPLRRSIRVNTLKISVADFLQLMAPYGWTLTPIPWCEEGFWIERDDEDALPLGNTAEHLSGLFYIQEASSML  102 (470)
T ss_pred             HHHHHHcCCCCCeEEEEcCCcCCHHHHHHHHHhCCCceeECCCCCceEEEecCccccCCcccChHHHCCcEEEECHHHHH
Confidence            334446778999999999999999999999877 7888889999999998642    35789999999999999999999


Q ss_pred             HHHHc--CCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCC-CC
Q 019802          233 VAAAL--APKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPK-DP  309 (335)
Q Consensus       233 ~~~~l--~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~~~-~~  309 (335)
                      ++.++  +++||++|||+||||||||+||+++|++.|.|+|+|++++|++.+++|++|+|+.||.+.+.|+..+... ..
T Consensus       103 ~~~~L~~~~~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~~nv~v~~~D~~~~~~~~~~  182 (470)
T PRK11933        103 PVAALFADDNAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGVSNVALTHFDGRVFGAALPE  182 (470)
T ss_pred             HHHHhccCCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCchhhhhhhchh
Confidence            99999  8999999999999999999999999999999999999999999999999999999999999999876532 23


Q ss_pred             CCceEEEEEEeccccccccc
Q 019802          310 AYSEVSLIFCIFTWMIIMFH  329 (335)
Q Consensus       310 ~fd~V~~IllD~~cs~~g~~  329 (335)
                      .||.   ||||+||||+||.
T Consensus       183 ~fD~---ILvDaPCSG~G~~  199 (470)
T PRK11933        183 TFDA---ILLDAPCSGEGTV  199 (470)
T ss_pred             hcCe---EEEcCCCCCCccc
Confidence            4665   9999999999983

>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins

Probab=100.00  E-value=3.7e-35  Score=271.59  Aligned_cols=165  Identities=35%  Similarity=0.533  Sum_probs=145.5

Q ss_pred             cCCCCCCCceEEEcCCCCCHHHHHHHHcc-cccccccCCCCCe--EEeCCCCCCCCCcccccceEEecCchHHHHHHHcC
Q 019802          162 QTPDVPKPRYVRVNTLKMDVDSAVLELGK-QFVVQKDDLVPDL--LILPPGCDLHVHPLIVNGCVFLQGKASSMVAAALA  238 (335)
Q Consensus       162 ~~~~~~~p~~lRvN~~k~~~~~~~~~L~~-~~~~~~~~~~~~~--l~~~~~~~~~~~~~~~~g~~~iQd~~s~l~~~~l~  238 (335)
                      ++++.++|.|+|||++|++++++.+.|++ |+.+++.++.+++  +.......+..++.|++|+|++||.+||+++..|+
T Consensus         3 ~~~n~~~~~~iRvN~~k~~~~~~~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~G~~~vQd~sS~l~~~~L~   82 (283)
T PF01189_consen    3 EANNCPPPVTIRVNTLKISREELLEELEEEGIQLEPIPRSPDALRVIGKSPYSICSLPEFKNGLFYVQDESSQLVALALD   82 (283)
T ss_dssp             HHCTS--GEEEEE-TTTSSHHHHHHHHHHTTHEEEEETSTTCEEEEEEECSSCGGGSHHHHTTSEEEHHHHHHHHHHHHT
T ss_pred             cccCCCCCeEEEECcCcCCHHHHHHHHhhcccceEEcccccchhccccccccchhhchhhhCCcEEeccccccccccccc
Confidence            45678999999999999999999999988 8888888888888  44556678999999999999999999999999999


Q ss_pred             CCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCC--CCCCceEEE
Q 019802          239 PKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPK--DPAYSEVSL  316 (335)
Q Consensus       239 ~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~~~--~~~fd~V~~  316 (335)
                      +++|+.|||+||||||||+|++++|++.|.|+|+|++.+|+..+++|++|+|+.++.+.+.|+..+.+.  ...||   .
T Consensus        83 ~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~D~~~~~~~~~~~~fd---~  159 (283)
T PF01189_consen   83 PQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGVFNVIVINADARKLDPKKPESKFD---R  159 (283)
T ss_dssp             TTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-SSEEEEESHHHHHHHHHHTTTEE---E
T ss_pred             ccccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCCceEEEEeeccccccccccccccc---h
Confidence            999999999999999999999999999999999999999999999999999999999999999887432  22355   5


Q ss_pred             EEEeccccccccc
Q 019802          317 IFCIFTWMIIMFH  329 (335)
Q Consensus       317 IllD~~cs~~g~~  329 (335)
                      |++|+||||+|+.
T Consensus       160 VlvDaPCSg~G~i  172 (283)
T PF01189_consen  160 VLVDAPCSGLGTI  172 (283)
T ss_dssp             EEEECSCCCGGGT
T ss_pred             hhcCCCccchhhh
Confidence            9999999999983

In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....

>KOG2360 consensus Proliferation-associated nucleolar protein (NOL1) [Cell cycle control, cell division, chromosome partitioning]

Probab=100.00  E-value=6.1e-34  Score=263.13  Aligned_cols=286  Identities=35%  Similarity=0.486  Sum_probs=216.5

Q ss_pred             HHHHHHHHHHccchhhhhhhhhhhhccCCCccCHHHHHHHHHHHHhchHHHHHHHhhcccccccccchHHHHHHHHHHHH
Q 019802           37 EAAKVLRLVLRGDARRRAVGSIKSLVYSPSVKNKKATYALVCQTLKHLSIIKQVLDSASILNSKWKRQEELVYILTYDIL  116 (335)
Q Consensus        37 ~A~~iL~~v~~~~~~~~~l~~~~~~~~~~~~~dr~l~~~LV~gvlR~~~~LD~il~~~~ll~~~~~~~~~lLrl~lyqll  116 (335)
                      .|..+|..+.+..      ++++.+.+..+.++-..++++|..+++++.+||.+++.+.+...........+.+..|.++
T Consensus         3 ~~~~~l~~~~~~~------~s~k~l~~~s~~q~~k~~l~~v~~~~k~r~~l~~i~~d~~~~~~~~~~~~~~~~~l~~~ll   76 (413)
T KOG2360|consen    3 EAAEILRDVEKKE------GSIKMLVYESSKQNPKRTLALVCETLKYRPVLDEILEDSELKDAKMLARLVHMVVLVHDLL   76 (413)
T ss_pred             cchhhhhhHHhhh------hhHHHHHHhhhccchHHHHHHHHHHHhhhHHHHHHHhcchhhhhhhhcccccceeehhhhh
Confidence            4678888887643      3555556666667888899999999999999999998754322211111223346778888


Q ss_pred             hcCCCCch-----hHHHHHHHHhhhhHHHHHHHHHHHccCCCHHHHHHhhcCCCCCCCceEEEcCCCCCHHHHHHHHcc-
Q 019802          117 FGQEISLV-----GDAEKFLMLHKGAIQLALAQLLVRNKVKSIEDLMALYQTPDVPKPRYVRVNTLKMDVDSAVLELGK-  190 (335)
Q Consensus       117 f~~~iP~~-----a~v~~~v~~~k~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~lRvN~~k~~~~~~~~~L~~-  190 (335)
                      |....+..     .+..+...+.+..+.......-..++.....++..  ..+ .++|.|+|+||++.+.++.+..|.. 
T Consensus        77 ~~~~~~~~~~~~~~el~~~~~~~~~e~~~~~v~~~~k~~~~~~~~l~~--t~~-~~~pr~vRINtlk~~~~e~~~~L~~e  153 (413)
T KOG2360|consen   77 LSKIKRSGLMIDKRELKVIRLRLILRLKIETVMLKKKRKVKSLRELKL--TMK-IPLPRYVRINTLKGTTDEALDYLDYE  153 (413)
T ss_pred             hcccccccceeccchhhhhhHHHHhhhHHHHHHHHhhhhHHHHHHhhc--cCC-CCCceeEEeecccCchhhhhhhhhhh
Confidence            87754422     23344443333333221111111122222222221  123 6899999999999999998888764 


Q ss_pred             c---------ccccccCCCCCeEEeCCCCCCCCCcccccceEEecCchHHHHHHHcCCCCCCEEEEEcCCCchHHHHHHH
Q 019802          191 Q---------FVVQKDDLVPDLLILPPGCDLHVHPLIVNGCVFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAA  261 (335)
Q Consensus       191 ~---------~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~iQd~~s~l~~~~l~~~~g~~VLD~cagpG~kt~~la~  261 (335)
                      +         -.+..+++.+..+.++.+..|..+++|+.|++++||.+|++++++|+|.+|++|+|.||+||.||+|++.
T Consensus       154 ~~~~~~~l~p~~~~~D~~~~~ll~~~~~n~i~~~~ly~~g~~ilqd~asclpA~ll~p~~g~~v~d~caapg~KTsH~a~  233 (413)
T KOG2360|consen  154 KWKMITELKPDEFYVDPHVENLIIFPPSNFIVEHELYKNGKFILQDKASCLPAHLLDPRPGSRVIDTCAAPGNKTSHLAA  233 (413)
T ss_pred             hhhhhhhcCCcceeccccchhhcccCCCcceeeccccccCceEEechhhcchhhhcCCCCCCceeeeccccccchhhHHH
Confidence            1         1233466777888888777899999999999999999999999999999999999999999999999999


Q ss_pred             HcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCceEEEEEEecccccccccccc
Q 019802          262 LMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVSLIFCIFTWMIIMFHGFY  332 (335)
Q Consensus       262 ~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~~~~~~fd~V~~IllD~~cs~~g~~~~~  332 (335)
                      .|++.|+|+|+|.++.|.+.++..+...|+.+++...+|+... +.+..|..|.+||+||+|||+|||.-.
T Consensus       234 i~~n~gki~afe~d~~r~~tl~~~l~~ag~~~~~~~~~df~~t-~~~~~~~~v~~iL~DpscSgSgm~~r~  303 (413)
T KOG2360|consen  234 IMRNQGKIYAFERDAKRAATLRKLLKIAGVSIVESVEGDFLNT-ATPEKFRDVTYILVDPSCSGSGMVSRQ  303 (413)
T ss_pred             HhhccCCcchhhhhhHHHHHHHHHHHHcCCCccccccccccCC-CCcccccceeEEEeCCCCCCCccccce
Confidence            9999999999999999999999999999999999999999998 666779999999999999999998643

>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase

Probab=99.97  E-value=2.2e-30  Score=238.05  Aligned_cols=154  Identities=28%  Similarity=0.329  Sum_probs=136.8

Q ss_pred             EEEcCCCCCHHHHHHHHcc-cccccccCCCCCeEEeCC-CCCCCCCcccccceEEecCchHHHHHHHcCCCCCCEEEEEc
Q 019802          172 VRVNTLKMDVDSAVLELGK-QFVVQKDDLVPDLLILPP-GCDLHVHPLIVNGCVFLQGKASSMVAAALAPKPGWKVLDAC  249 (335)
Q Consensus       172 lRvN~~k~~~~~~~~~L~~-~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~g~~~iQd~~s~l~~~~l~~~~g~~VLD~c  249 (335)
                      +|||++|++++++++.|++ ++.+++.. .+.++.+.. ...+..++.|.+|++++||.+||+++..+++++|++|||+|
T Consensus         1 ~RvN~lk~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~G~~~~qd~~s~~~~~~l~~~~g~~VLDl~   79 (264)
T TIGR00446         1 IRVNTLKISVADLLQRLENRGVTLIPWC-EEGFFEVNESPLPIGSTPEYLSGLYYIQEASSMIPPLALEPDPPERVLDMA   79 (264)
T ss_pred             CeecCCCCCHHHHHHHHHhCCCceeecC-CCceEEEeCCCCCcccChhHhCCeEEEECHHHHHHHHHhCCCCcCEEEEEC
Confidence            6999999999999999987 77666544 456676653 34588999999999999999999999999999999999999


Q ss_pred             CCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCceEEEEEEeccccccccc
Q 019802          250 SAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVSLIFCIFTWMIIMFH  329 (335)
Q Consensus       250 agpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~~~~~~fd~V~~IllD~~cs~~g~~  329 (335)
                      ||||+||+++++++++.|.|+|+|+++.|++.+++|++++|+.||++++.|+..++.....||   .|++|+||||+|+.
T Consensus        80 ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~~fD---~Vl~D~Pcsg~G~~  156 (264)
T TIGR00446        80 AAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVLNVAVTNFDGRVFGAAVPKFD---AILLDAPCSGEGVI  156 (264)
T ss_pred             CCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEecCCHHHhhhhccCCC---EEEEcCCCCCCccc
Confidence            999999999999998889999999999999999999999999999999999987765444566   59999999999984

>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]

Probab=99.97  E-value=1.7e-30  Score=242.68  Aligned_cols=173  Identities=27%  Similarity=0.372  Sum_probs=149.4

Q ss_pred             HHHHHHhhcCCCCCCCceEEEcCCCCCHHHHHHHHcc-cccccc-cCCCCCeEEeC-CCCCCCCCcccccceEEecCchH
Q 019802          154 IEDLMALYQTPDVPKPRYVRVNTLKMDVDSAVLELGK-QFVVQK-DDLVPDLLILP-PGCDLHVHPLIVNGCVFLQGKAS  230 (335)
Q Consensus       154 ~~~~~~~~~~~~~~~p~~lRvN~~k~~~~~~~~~L~~-~~~~~~-~~~~~~~l~~~-~~~~~~~~~~~~~g~~~iQd~~s  230 (335)
                      ..+..+.++++..+.|+++|.||+|+-+-+....|.. |+...+ ..|..-++++. +..++..++.|..|++.+|+.+|
T Consensus       151 ~~ev~~~~e~~~~~rp~tir~ntlk~~rrd~~~~L~nrgv~~~pl~~ws~vgl~v~~s~vpigat~e~lag~~~LQ~~sS  230 (460)
T KOG1122|consen  151 LVEVYEFLEANEKPRPVTIRTNTLKTRRRDLAVELSNRGVNLDPLGKWSKVGLVVFDSVVPIGATPEYLAGHYMLQNASS  230 (460)
T ss_pred             HHHHHHHHHhhcCCCCeeEEecccchhhhhHHHHHHhcccCcccccccccceEEEecCccccCCchhhcccceeeccCcc
Confidence            4445556677888999999999999988888777765 554433 34666777764 45789999999999999999999


Q ss_pred             HHHHHHcCCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCC--C
Q 019802          231 SMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPK--D  308 (335)
Q Consensus       231 ~l~~~~l~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~~~--~  308 (335)
                      .++++.|+|+||++||||||||||||+|+|.+|+++|.|+|.|.+..|++.++.|+.++|+.|..+.+.|..+++..  .
T Consensus       231 ~Lpv~aL~Pq~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlGv~ntiv~n~D~~ef~~~~~~  310 (460)
T KOG1122|consen  231 FLPVMALDPQPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLGVTNTIVSNYDGREFPEKEFP  310 (460)
T ss_pred             cceeeecCCCCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHhCCCceEEEccCcccccccccC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999877522  1


Q ss_pred             CCCceEEEEEEeccccccccc
Q 019802          309 PAYSEVSLIFCIFTWMIIMFH  329 (335)
Q Consensus       309 ~~fd~V~~IllD~~cs~~g~~  329 (335)
                      ++||+   ||||+||||+|+-
T Consensus       311 ~~fDR---VLLDAPCSGtgvi  328 (460)
T KOG1122|consen  311 GSFDR---VLLDAPCSGTGVI  328 (460)
T ss_pred             cccce---eeecCCCCCCccc
Confidence            26776   9999999999973

>KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis]

Probab=99.79  E-value=1.9e-19  Score=167.28  Aligned_cols=116  Identities=26%  Similarity=0.265  Sum_probs=99.7

Q ss_pred             ccceEEecCchHHHHHHHcCCCCCCEEEEEcCCCchHHHHHHHHcCC---CeEEEEEeCCHHHHHHHHHHHHHhCCCcEE
Q 019802          219 VNGCVFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKG---KGKIVACELNKERVRRLKDTIKLSGAANIE  295 (335)
Q Consensus       219 ~~g~~~iQd~~s~l~~~~l~~~~g~~VLD~cagpG~kt~~la~~~~~---~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~  295 (335)
                      .-|.++.||.+|++++.+|+++||++|||||||||+||.+|.+.+..   .|.|+|.|.+..|+..+...++++.-.++.
T Consensus       133 ~vg~i~rqeavSmlPvL~L~v~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l~~~~~~  212 (375)
T KOG2198|consen  133 GVGNIYRQEAVSMLPVLALGVKPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRLPSPNLL  212 (375)
T ss_pred             ccccchhhhhhhccchhhcccCCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhccCCccee
Confidence            56889999999999999999999999999999999999999887642   479999999999999999999999888899


Q ss_pred             EEeccCCCCCCC------CCCCceEEEEEEecccccccccccccC
Q 019802          296 VLHGDFLNLDPK------DPAYSEVSLIFCIFTWMIIMFHGFYVN  334 (335)
Q Consensus       296 ~~~~D~~~~~~~------~~~fd~V~~IllD~~cs~~g~~~~~~~  334 (335)
                      +.++|+...+..      +..+...|.||||+|||++|++.-..|
T Consensus       213 v~~~~~~~~p~~~~~~~~~~~~~~fDrVLvDVPCS~Dgt~rk~~~  257 (375)
T KOG2198|consen  213 VTNHDASLFPNIYLKDGNDKEQLKFDRVLVDVPCSGDGTLRKNPN  257 (375)
T ss_pred             eecccceeccccccccCchhhhhhcceeEEecccCCCcccccCch
Confidence            999998776643      224455566999999999999765443

>cd00620 Methyltransferase_Sun N-terminal RNA binding domain of the methyltransferase Sun

Probab=99.55  E-value=3.6e-14  Score=116.05  Aligned_cols=113  Identities=20%  Similarity=0.275  Sum_probs=84.4

Q ss_pred             hHHHHHHHHHHHHHHccchhhh-hhhhhhhhccCCCccCHHHHHHHHHHHHhchHHHHHHHhhcccccccc----cchHH
Q 019802           32 YFARREAAKVLRLVLRGDARRR-AVGSIKSLVYSPSVKNKKATYALVCQTLKHLSIIKQVLDSASILNSKW----KRQEE  106 (335)
Q Consensus        32 ~~aR~~A~~iL~~v~~~~~~~~-~l~~~~~~~~~~~~~dr~l~~~LV~gvlR~~~~LD~il~~~~ll~~~~----~~~~~  106 (335)
                      |++|..|+++|.++..++...+ .+..... ... +.+|++++++|||||+||+..||++|++  ++++++    ...+.
T Consensus         1 ~~~R~~A~~~L~~v~~~~~~~~~~l~~~~~-~~~-~~~d~~~~~~lv~g~~r~~~~ld~~i~~--~l~~~~~~~~~~~~~   76 (126)
T cd00620           1 MNARSTAAEVLRDVLQRGASLNAVLSALQK-KDK-SDRDRGLATELVYGTLRWLALLDWIINP--LLKKPDVGKDPDVRN   76 (126)
T ss_pred             CCHHHHHHHHHHHHHHcCCcHHHHHHHHHH-hcC-CHHHHHHHHHHHHHHHHhHHHHHHHHHH--HhCCCccccCHHHHH
Confidence            5679999999999988665443 3332111 112 4579999999999999999999999998  455543    23578


Q ss_pred             HHHHHHHHHHhcCCCCchhHHHHHHHHhhhh---HHHHHHHHHHHc
Q 019802          107 LVYILTYDILFGQEISLVGDAEKFLMLHKGA---IQLALAQLLVRN  149 (335)
Q Consensus       107 lLrl~lyqllf~~~iP~~a~v~~~v~~~k~~---~~~~l~~~~~~~  149 (335)
                      +|++|+|||+|++ +|+++.+++.|+..|..   -..+|.+.+.+.
T Consensus        77 iLr~a~~el~~~~-~p~~avvneaVelak~~~~~~~~~fVNaVLr~  121 (126)
T cd00620          77 LLRLGLYQLLYLD-VPPHAAVDETVEIAKIRKDLGRAGLVNAVLRR  121 (126)
T ss_pred             HHHHHHHHHHhcC-CCchHHHHHHHHHHHHhCCCchhhHHHHHHHH
Confidence            9999999999998 99999999999876531   223466665554

The rRNA-specific 5-methylcytidine transferase Sun, also known as RrmB or Fmu shares the RNA-binding non-catalytic domain with the transcription termination factor NusB. The precise biological role of this domain in Sun is unknown, although it is likely to be involved in sequence-specific RNA binding. The C-terminal methyltransferase domain of Sun has been shown to catalyze formation of m5C at position 967 of 16S rRNA in Escherichia coli.

>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]

Probab=99.49  E-value=1.6e-13  Score=123.07  Aligned_cols=84  Identities=29%  Similarity=0.474  Sum_probs=76.9

Q ss_pred             HHHcCCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCce
Q 019802          234 AAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSE  313 (335)
Q Consensus       234 ~~~l~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~~~~~~fd~  313 (335)
                      ...+...+|++|||+|||+|..+.++++..+ .|+|+++|+|++||+.+++.+...|..+|+++++||+++|++|++||.
T Consensus        44 i~~~~~~~g~~vLDva~GTGd~a~~~~k~~g-~g~v~~~D~s~~ML~~a~~k~~~~~~~~i~fv~~dAe~LPf~D~sFD~  122 (238)
T COG2226          44 ISLLGIKPGDKVLDVACGTGDMALLLAKSVG-TGEVVGLDISESMLEVAREKLKKKGVQNVEFVVGDAENLPFPDNSFDA  122 (238)
T ss_pred             HHhhCCCCCCEEEEecCCccHHHHHHHHhcC-CceEEEEECCHHHHHHHHHHhhccCccceEEEEechhhCCCCCCccCE
Confidence            4455666999999999999999999999987 799999999999999999999999998899999999999999999998


Q ss_pred             EEEEE
Q 019802          314 VSLIF  318 (335)
Q Consensus       314 V~~Il  318 (335)
                      |+..+
T Consensus       123 vt~~f  127 (238)
T COG2226         123 VTISF  127 (238)
T ss_pred             EEeee
Confidence            76544

>TIGR01951 nusB transcription antitermination factor NusB

Probab=99.49  E-value=3.2e-13  Score=110.85  Aligned_cols=113  Identities=12%  Similarity=0.107  Sum_probs=84.1

Q ss_pred             HHHHHHHHHHHHHccchhhh-hhhhhhhhccCCCccCHHHHHHHHHHHHhchHHHHHHHhhccccc-cccc----chHHH
Q 019802           34 ARREAAKVLRLVLRGDARRR-AVGSIKSLVYSPSVKNKKATYALVCQTLKHLSIIKQVLDSASILN-SKWK----RQEEL  107 (335)
Q Consensus        34 aR~~A~~iL~~v~~~~~~~~-~l~~~~~~~~~~~~~dr~l~~~LV~gvlR~~~~LD~il~~~~ll~-~~~~----~~~~l  107 (335)
                      +|..|+++|.+++.++.+.+ .+..... ...++.+|++++++|||||+||++.||++|++  +++ .++.    ..+.+
T Consensus         4 ~R~~a~~~l~~~~~~~~~~~~~l~~~~~-~~~l~~~d~~~~~~lv~~~lr~~~~ld~~i~~--~~~~~~~~~l~~~~~~i   80 (129)
T TIGR01951         4 ARELALQALYQWELSGNDVEEIIEEFLE-ERELDEEDREYFLELVRGVLENQEEIDELISP--HLKDWSLERLDPVDRAI   80 (129)
T ss_pred             HHHHHHHHHHHHHcCCCCHHHHHHHHHH-hcccchhHHHHHHHHHHHHHHhHHHHHHHHHH--HhcCCCHHHhhHHHHHH
Confidence            69999999999988665543 3332211 12456689999999999999999999999998  453 3332    24789


Q ss_pred             HHHHHHHHHhcCCCCchhHHHHHHHHhhhh---HHHHHHHHHHHc
Q 019802          108 VYILTYDILFGQEISLVGDAEKFLMLHKGA---IQLALAQLLVRN  149 (335)
Q Consensus       108 Lrl~lyqllf~~~iP~~a~v~~~v~~~k~~---~~~~l~~~~~~~  149 (335)
                      |++|+||++|++++|+++.++++|+..|..   -..+|.+.+.|.
T Consensus        81 Lr~a~~el~~~~~~p~~avineaV~lak~~~~~~~~~fVNaVLr~  125 (129)
T TIGR01951        81 LRLAAYELLYRPDVPYKVVINEAVELAKKFGDEDSHKFVNGVLDK  125 (129)
T ss_pred             HHHHHHHHHhCCCCCCcchHHHHHHHHHHHCCCCchhhHHHHHHH
Confidence            999999999996689999999999876531   123466665554

A transcription antitermination complex active in many bacteria was designated N-utilization substance (Nus) in E. coli because of its interaction with phage lambda protein N. This model represents NusB. Other components are NusA and NusG. NusE is, in fact, ribosomal protein S10.

>cd00619 Terminator_NusB Transcription termination factor NusB (N protein-Utilization Substance B)

Probab=99.48  E-value=4.4e-13  Score=110.15  Aligned_cols=113  Identities=15%  Similarity=0.108  Sum_probs=83.6

Q ss_pred             HHHHHHHHHHHHHccchhhh-hhhhhhhhccCCCccCHHHHHHHHHHHHhchHHHHHHHhhccccccc-c----cchHHH
Q 019802           34 ARREAAKVLRLVLRGDARRR-AVGSIKSLVYSPSVKNKKATYALVCQTLKHLSIIKQVLDSASILNSK-W----KRQEEL  107 (335)
Q Consensus        34 aR~~A~~iL~~v~~~~~~~~-~l~~~~~~~~~~~~~dr~l~~~LV~gvlR~~~~LD~il~~~~ll~~~-~----~~~~~l  107 (335)
                      +|+.|+++|.+++.++.+.+ .+..... ....+.+|++++++|||||+||+..||++|++  +++++ +    ...+.+
T Consensus         4 ~R~~a~~~L~~~~~~~~~~~~~l~~~~~-~~~~~~~d~~~~~~lv~gvlr~~~~ld~ii~~--~l~~~~~~~l~~~~~~i   80 (130)
T cd00619           4 ARELAVQALYAWELAPEILAEVVSLLEL-LQYKSKKVLPFALKLVRGVLENIEEIDELIEK--HLRNWSLDRLAIVERAI   80 (130)
T ss_pred             HHHHHHHHHHHHHhcCCCHHHHHHHHHH-hcccchhHHHHHHHHHHHHHHhHHHHHHHHHH--HccCCCHHHhhHHHHHH
Confidence            69999999999998665543 3322111 12345679999999999999999999999998  45533 1    134789


Q ss_pred             HHHHHHHHHhcCCCCchhHHHHHHHHhhhh---HHHHHHHHHHHc
Q 019802          108 VYILTYDILFGQEISLVGDAEKFLMLHKGA---IQLALAQLLVRN  149 (335)
Q Consensus       108 Lrl~lyqllf~~~iP~~a~v~~~v~~~k~~---~~~~l~~~~~~~  149 (335)
                      |++|+||++|++.+|+++.++++|+..|..   -..+|.+.+.+.
T Consensus        81 Lria~~el~~~~~~p~~~vinEaV~lak~~~~~~~~~fVNaVLr~  125 (130)
T cd00619          81 LRLAVYELLFLPDVPHPVVINEAIELAKRFGGDDSHKFVNGVLDK  125 (130)
T ss_pred             HHHHHHHHHhCCCCCCcchHHHHHHHHHHHCCCcchhHHHHHHHH
Confidence            999999999998899999999999876531   123466665554

NusB plays a key role in the regulation of ribosomal RNA biosynthesis in eubacteria by modulating the efficiency of transcriptional antitermination. NusB along with other Nus factors (NusA, NusE/S10 and NusG) forms the core complex with the boxA element of the nut site of the rRNA operons. These interactions help RNA polymerase to counteract polarity during transcription of rRNA operons and allow stable antitermination. The transcription antitermination system can be appropriated by some bacteriophages such as lambda, which use the system to switch between the lysogenic and lytic modes of phage propagation.

>PRK00202 nusB transcription antitermination protein NusB; Reviewed

Probab=99.47  E-value=5.3e-13  Score=110.72  Aligned_cols=100  Identities=12%  Similarity=0.104  Sum_probs=77.9

Q ss_pred             HHHHHHHHHHHHHHccchhhh-hhhhhhhhccCCCccCHHHHHHHHHHHHhchHHHHHHHhhccccc-cccc----chHH
Q 019802           33 FARREAAKVLRLVLRGDARRR-AVGSIKSLVYSPSVKNKKATYALVCQTLKHLSIIKQVLDSASILN-SKWK----RQEE  106 (335)
Q Consensus        33 ~aR~~A~~iL~~v~~~~~~~~-~l~~~~~~~~~~~~~dr~l~~~LV~gvlR~~~~LD~il~~~~ll~-~~~~----~~~~  106 (335)
                      .+|+.|+++|.++..++.+.+ .+..... ...++.+|++|+++|||||+||+..||++|.+  +++ .++.    ..+.
T Consensus         5 ~~R~~a~~~L~~~~~~~~~~~~~l~~~~~-~~~~~~~d~~~~~~lv~gvlr~~~~lD~ii~~--~l~~~~~~~l~~~~~~   81 (137)
T PRK00202          5 KAREAAVQALYQWELSGNDIAEIIEAQLL-EEQYDKADPAYFRSLVRGVVENQAELDELISP--YLKDWTLERLDPVERA   81 (137)
T ss_pred             HHHHHHHHHHHHHHccCCCHHHHHHHHHH-hcccchhhHHHHHHHHHHHHHhHHHHHHHHHH--HhcCCCHHHhhHHHHH
Confidence            479999999999988665543 3332211 12355689999999999999999999999998  453 2322    2478


Q ss_pred             HHHHHHHHHHhcCCCCchhHHHHHHHHhh
Q 019802          107 LVYILTYDILFGQEISLVGDAEKFLMLHK  135 (335)
Q Consensus       107 lLrl~lyqllf~~~iP~~a~v~~~v~~~k  135 (335)
                      +||+|+||++|++++|+++.++++|+..+
T Consensus        82 iLr~a~~Ell~~~~~p~~~vinEaV~lak  110 (137)
T PRK00202         82 ILRLALYELLFRDDVPYKVVINEAIELAK  110 (137)
T ss_pred             HHHHHHHHHHhCCCCCCcchHHHHHHHHH
Confidence            99999999999966999999999998765

>PF01029 NusB: NusB family; InterPro: IPR006027 This domain is found in a number of functionally different proteins: NusB a prokaryotic transcription factor involved in antitermination TIM44, the mitochondrial inner membrane translocase subunit RsmB, the 16S rRNA m5C967 methyltransferase NusB is a prokaryotic transcription factor involved in antitermination processes, during which it interacts with the boxA portion of the mRNA nut site

Probab=99.47  E-value=5.7e-13  Score=110.04  Aligned_cols=114  Identities=17%  Similarity=0.139  Sum_probs=82.8

Q ss_pred             hHHHHHHHHHHHHHH-------ccchhhh-hhhhhhhhccCCCccCHHHHHHHHHHHHhchHHHHHHHhhcccc-ccccc
Q 019802           32 YFARREAAKVLRLVL-------RGDARRR-AVGSIKSLVYSPSVKNKKATYALVCQTLKHLSIIKQVLDSASIL-NSKWK  102 (335)
Q Consensus        32 ~~aR~~A~~iL~~v~-------~~~~~~~-~l~~~~~~~~~~~~~dr~l~~~LV~gvlR~~~~LD~il~~~~ll-~~~~~  102 (335)
                      +++|+.|+++|+++.       ..+.+.+ .+... ......+.+|++|+++||+||+||+..||++|.+  ++ +.++.
T Consensus         1 ~~aR~~A~q~L~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~d~~~~~~lv~gv~~~~~~ld~~i~~--~~~~~~~~   77 (134)
T PF01029_consen    1 RKARELALQALYQVEFNDEEDEEEGQFLDEALEEE-LEESELSEEDRAFARELVYGVLRNKEELDALISK--LLKNWPLE   77 (134)
T ss_dssp             HHHHHHHHHHHHHHHHHTSSHHHHHHHHHHHHHHH-HHHTTSTHHHHHHHHHHHHHHHHTHHHHHHHHHH--TSTSSTGG
T ss_pred             ChHHHHHHHHHHHHHccCCchhhhhhhHHHHHhhc-ccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHH--HhccCCcc
Confidence            468999999999993       3222222 22111 1124456789999999999999999999999998  45 33332


Q ss_pred             ----chHHHHHHHHHHHHhcCCCCchhHHHHHHHHhhhh---HHHHHHHHHHH
Q 019802          103 ----RQEELVYILTYDILFGQEISLVGDAEKFLMLHKGA---IQLALAQLLVR  148 (335)
Q Consensus       103 ----~~~~lLrl~lyqllf~~~iP~~a~v~~~v~~~k~~---~~~~l~~~~~~  148 (335)
                          ..+.+||+|+|||+|++++|++++++++|+..|..   -..+|.+.+.+
T Consensus        78 rl~~~~~~iLrla~~El~~~~~~p~~v~InEaVelak~~~~~~~~~fVNaVL~  130 (134)
T PF01029_consen   78 RLPPVDRAILRLAIYELLFLDDIPPHVAINEAVELAKKYGDEKSAGFVNAVLR  130 (134)
T ss_dssp             GSGHHHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHS-TTHHHHHHHHHH
T ss_pred             ccCHHHHHHHHHHHHHHHhcCCCCccchHHHHHHHHHHhCCCCcchhHHHHHH
Confidence                34789999999999997799999999999876542   13345555554

Previous studies have shown that NusB exhibits an all-helical fold, and that the protein from Escherichia coli forms monomers, while Mycobacterium tuberculosis NusB is a dimer. The functional significance of NusB dimerization is unknown. An N-terminal arginine-rich sequence is the probable RNA binding site, exhibiting aromatic residues as potential stacking partners for the RNA bases. The RNA binding region is hidden in the subunit interface of dimeric NusB proteins, such as NusB from M. tuberculosis, suggesting that such dimers have to undergo a considerable conformational change or dissociate for engagement with RNA. In certain organisms, dimerization may be employed to package NusB in an inactive form until recruitment into antitermination complexes [, ]. The antitermination proteins of E. coli are recruited in the replication cycle of Bacteriophage lambda, where they play an important role in switching from the lysogenic to the lytic cycle.; GO: 0003723 RNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1SQG_A 1SQF_A 3IMQ_A 3D3C_C 3D3B_A 1EY1_A 1EYV_A 1TZV_A 1TZT_B 1TZX_B ....

>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []

Probab=99.42  E-value=6e-13  Score=120.03  Aligned_cols=87  Identities=28%  Similarity=0.429  Sum_probs=63.7

Q ss_pred             HHHHHcCCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCC
Q 019802          232 MVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAY  311 (335)
Q Consensus       232 l~~~~l~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~~~~~~f  311 (335)
                      .+...+.+++|++|||+|||+|..+..+++..++.++|+++|+|+.||+.+++++++.+..+|+++++|++++++++++|
T Consensus        38 ~~~~~~~~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~~i~~v~~da~~lp~~d~sf  117 (233)
T PF01209_consen   38 KLIKLLGLRPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQNIEFVQGDAEDLPFPDNSF  117 (233)
T ss_dssp             HHHHHHT--S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT--SEEEEE-BTTB--S-TT-E
T ss_pred             HHHhccCCCCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCCCeeEEEcCHHHhcCCCCce
Confidence            34556778899999999999999999999988888999999999999999999999999989999999999999999999


Q ss_pred             ceEEEEE
Q 019802          312 SEVSLIF  318 (335)
Q Consensus       312 d~V~~Il  318 (335)
                      |.|.+-+
T Consensus       118 D~v~~~f  124 (233)
T PF01209_consen  118 DAVTCSF  124 (233)
T ss_dssp             EEEEEES
T ss_pred             eEEEHHh
Confidence            9765433

Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.

>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase

Probab=99.31  E-value=2.4e-11  Score=108.40  Aligned_cols=92  Identities=24%  Similarity=0.289  Sum_probs=79.2

Q ss_pred             HHHHHHHcCCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCC
Q 019802          230 SSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDP  309 (335)
Q Consensus       230 s~l~~~~l~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~~~~~  309 (335)
                      ...+...+++++|++|||+|||+|..+..+++..+.+++|+++|+++.+++.+++++++.|++|++++++|+.+..+...
T Consensus        66 ~~~~~~~l~~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~~v~~~~~d~~~~~~~~~  145 (215)
T TIGR00080        66 VAMMTELLELKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLDNVIVIVGDGTQGWEPLA  145 (215)
T ss_pred             HHHHHHHhCCCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCeEEEECCcccCCcccC
Confidence            34556677899999999999999999999999877678999999999999999999999999999999999987655445


Q ss_pred             CCceEEEEEEecccc
Q 019802          310 AYSEVSLIFCIFTWM  324 (335)
Q Consensus       310 ~fd~V~~IllD~~cs  324 (335)
                      .||.   |++++++.
T Consensus       146 ~fD~---Ii~~~~~~  157 (215)
T TIGR00080       146 PYDR---IYVTAAGP  157 (215)
T ss_pred             CCCE---EEEcCCcc
Confidence            6875   77886654

Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.

>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]

Probab=99.28  E-value=3.8e-11  Score=102.84  Aligned_cols=87  Identities=26%  Similarity=0.403  Sum_probs=75.2

Q ss_pred             HHHHHHcCCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCC
Q 019802          231 SMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPA  310 (335)
Q Consensus       231 ~l~~~~l~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~~~~~~  310 (335)
                      .+....|.+.||++++|+|||+|+.|..++ ++.+.++|+|+|.++++++..++|++++|++|++++.+|+-+......+
T Consensus        24 al~ls~L~~~~g~~l~DIGaGtGsi~iE~a-~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g~Ap~~L~~~~~  102 (187)
T COG2242          24 ALTLSKLRPRPGDRLWDIGAGTGSITIEWA-LAGPSGRVIAIERDEEALELIERNAARFGVDNLEVVEGDAPEALPDLPS  102 (187)
T ss_pred             HHHHHhhCCCCCCEEEEeCCCccHHHHHHH-HhCCCceEEEEecCHHHHHHHHHHHHHhCCCcEEEEeccchHhhcCCCC
Confidence            344556889999999999999999999999 7788999999999999999999999999999999999999776554346


Q ss_pred             CceEEEEEEec
Q 019802          311 YSEVSLIFCIF  321 (335)
Q Consensus       311 fd~V~~IllD~  321 (335)
                      ||.   ||+--
T Consensus       103 ~da---iFIGG  110 (187)
T COG2242         103 PDA---IFIGG  110 (187)
T ss_pred             CCE---EEECC
Confidence            775   66643

>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=99.26  E-value=6.6e-11  Score=105.36  Aligned_cols=98  Identities=26%  Similarity=0.316  Sum_probs=81.9

Q ss_pred             ceEEecCchHHHHHHHcCCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEecc
Q 019802          221 GCVFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGD  300 (335)
Q Consensus       221 g~~~iQd~~s~l~~~~l~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D  300 (335)
                      |....+..-...+...+++++|++|||+|||+|..|..+++.++..++|+++|+++.+++.+++++++.|+.|++++++|
T Consensus        56 g~~~~~p~~~~~~~~~l~~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~~v~~~~gd  135 (212)
T PRK13942         56 GQTISAIHMVAIMCELLDLKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYDNVEVIVGD  135 (212)
T ss_pred             CCEeCcHHHHHHHHHHcCCCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECC
Confidence            33344444445566678899999999999999999999999987778999999999999999999999999999999999


Q ss_pred             CCCCCCCCCCCceEEEEEEec
Q 019802          301 FLNLDPKDPAYSEVSLIFCIF  321 (335)
Q Consensus       301 ~~~~~~~~~~fd~V~~IllD~  321 (335)
                      +....+....||.   |+++.
T Consensus       136 ~~~~~~~~~~fD~---I~~~~  153 (212)
T PRK13942        136 GTLGYEENAPYDR---IYVTA  153 (212)
T ss_pred             cccCCCcCCCcCE---EEECC
Confidence            9876666667886   56553

>cd00447 NusB_Sun RNA binding domain of NusB (N protein-Utilization Substance B) and Sun (also known as RrmB or Fmu) proteins

Probab=99.24  E-value=1.2e-10  Score=95.47  Aligned_cols=112  Identities=15%  Similarity=0.173  Sum_probs=77.3

Q ss_pred             HHHHHHHHHHHHHcc-chhhh-hhhhhhhhccCCCccCHHHHHHHHHHHHhchHHHHHHHhhcccccccc-----cchHH
Q 019802           34 ARREAAKVLRLVLRG-DARRR-AVGSIKSLVYSPSVKNKKATYALVCQTLKHLSIIKQVLDSASILNSKW-----KRQEE  106 (335)
Q Consensus        34 aR~~A~~iL~~v~~~-~~~~~-~l~~~~~~~~~~~~~dr~l~~~LV~gvlR~~~~LD~il~~~~ll~~~~-----~~~~~  106 (335)
                      +|+.|+++|.++... +...+ .+....  ...++.+|++++++|||||+||+..||++|++  +++.++     +..+.
T Consensus         2 ~R~~a~~~L~~~~~~~~~~~~~~~~~~~--~~~~~~~d~~~~~~lv~gv~r~~~~ld~~i~~--~~~~~~~~r~~~~~~~   77 (129)
T cd00447           2 AREIAFQALYQVEIRNGISLEAVLSALE--KLQLAKKDRPFALELVYGVLRNLPELDDIISP--LLKKWLLDRLDKVDRA   77 (129)
T ss_pred             HHHHHHHHHHHHHhcCCCCHHHHHHHHH--HcccchhHHHHHHHHHHHHHHhHHHHHHHHHH--HccCCChhhhhHHHHH
Confidence            699999999999875 44433 222211  12344579999999999999999999999998  455442     23456


Q ss_pred             HHHHHHHHHHhcC-CCCchhHHHHHHHHhhhhH---HHHHHHHHHHc
Q 019802          107 LVYILTYDILFGQ-EISLVGDAEKFLMLHKGAI---QLALAQLLVRN  149 (335)
Q Consensus       107 lLrl~lyqllf~~-~iP~~a~v~~~v~~~k~~~---~~~l~~~~~~~  149 (335)
                      +++++.++++++. ++|++++++++|+..|...   ..+|.+.+.+.
T Consensus        78 il~l~~~el~~~~~~~p~~~vineaVelak~~~~~~~~~fVNaVLr~  124 (129)
T cd00447          78 ILRLLLYELYQLLYDVPPPVAINEAVELAKRFGDDDSAKFVNGVLRR  124 (129)
T ss_pred             HHHHHHHHHHhCcCCCCchhHHHHHHHHHHHHCCCCcchhHHHHHHH
Confidence            7776666666654 5899999999998765321   22455555543

This family includes two orthologous groups exemplified by the transcription termination factor NusB and the N-terminal domain of the rRNA-specific 5-methylcytidine transferase (m5C-methyltransferase) Sun. The NusB protein plays a key role in the regulation of ribosomal RNA biosynthesis in eubacteria by modulating the efficiency of transcriptional antitermination. NusB along with other Nus factors (NusA, NusE/S10 and NusG) forms the core complex with the boxA element of the nut site of the rRNA operons. These interactions help RNA polymerase to counteract polarity during transcription of rRNA operons and allow stable antitermination. The transcription antitermination system can be appropriated by some bacteriophages such as lambda, which use the system to switch between the lysogenic and lytic modes of phage propagation. The m5C-methyltransferase Sun shares the

>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []

Probab=99.21  E-value=1.5e-10  Score=104.86  Aligned_cols=95  Identities=22%  Similarity=0.316  Sum_probs=74.1

Q ss_pred             hHHHHHHHcCCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCC-cEEEEeccCCCCCCC
Q 019802          229 ASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAA-NIEVLHGDFLNLDPK  307 (335)
Q Consensus       229 ~s~l~~~~l~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~-ni~~~~~D~~~~~~~  307 (335)
                      .+.++...++..||++||+.|+|+|..|..|+..+++.|+|+.+|+++.+.+.+++|+++.|+. ||.+.+.|..+-.+.
T Consensus        28 D~~~I~~~l~i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv~~~g~~  107 (247)
T PF08704_consen   28 DISYILMRLDIRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLDDNVTVHHRDVCEEGFD  107 (247)
T ss_dssp             HHHHHHHHTT--TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCCTTEEEEES-GGCG--S
T ss_pred             hHHHHHHHcCCCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCCCCceeEecceeccccc
Confidence            3446677899999999999999999999999999999999999999999999999999999995 799999999653332


Q ss_pred             CCCCceEEEEEEeccc
Q 019802          308 DPAYSEVSLIFCIFTW  323 (335)
Q Consensus       308 ~~~fd~V~~IllD~~c  323 (335)
                      ...=..+|+||||.|.
T Consensus       108 ~~~~~~~DavfLDlp~  123 (247)
T PF08704_consen  108 EELESDFDAVFLDLPD  123 (247)
T ss_dssp             TT-TTSEEEEEEESSS
T ss_pred             ccccCcccEEEEeCCC
Confidence            1111457789999875

; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.

>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=99.20  E-value=2.1e-10  Score=101.57  Aligned_cols=89  Identities=25%  Similarity=0.365  Sum_probs=75.4

Q ss_pred             HHHHHHcCCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCC-cEEEEeccCCCCCCCCC
Q 019802          231 SMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAA-NIEVLHGDFLNLDPKDP  309 (335)
Q Consensus       231 ~l~~~~l~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~-ni~~~~~D~~~~~~~~~  309 (335)
                      ..+...+++.++++|||+|||+|..+..+++.++..++|+++|+++.+++.+++|+++.|+. +++++++|+.+..+...
T Consensus        62 ~~~~~~l~~~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~~~~~  141 (205)
T PRK13944         62 AMMCELIEPRPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGLEKHA  141 (205)
T ss_pred             HHHHHhcCCCCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccCCccCC
Confidence            34456678889999999999999999999999876789999999999999999999999986 49999999987655555


Q ss_pred             CCceEEEEEEecc
Q 019802          310 AYSEVSLIFCIFT  322 (335)
Q Consensus       310 ~fd~V~~IllD~~  322 (335)
                      +||.   |+++..
T Consensus       142 ~fD~---Ii~~~~  151 (205)
T PRK13944        142 PFDA---IIVTAA  151 (205)
T ss_pred             CccE---EEEccC
Confidence            6775   666644

>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2

Probab=99.16  E-value=1.9e-10  Score=101.93  Aligned_cols=101  Identities=25%  Similarity=0.321  Sum_probs=79.1

Q ss_pred             ceEEecCchHHHHHHHcCCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEecc
Q 019802          221 GCVFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGD  300 (335)
Q Consensus       221 g~~~iQd~~s~l~~~~l~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D  300 (335)
                      |....|-.--..+.+.|+++||++|||+|||+|..|..|+.+.++.+.|+++|+++...+.++++++++|..||.++++|
T Consensus        52 ~~~is~P~~~a~~l~~L~l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~nv~~~~gd  131 (209)
T PF01135_consen   52 GQTISAPSMVARMLEALDLKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGIDNVEVVVGD  131 (209)
T ss_dssp             TEEE--HHHHHHHHHHTTC-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTHSEEEEES-
T ss_pred             eeechHHHHHHHHHHHHhcCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccCceeEEEcc
Confidence            34444333334455678899999999999999999999999999889999999999999999999999999999999999


Q ss_pred             CCCCCCCCCCCceEEEEEEecccc
Q 019802          301 FLNLDPKDPAYSEVSLIFCIFTWM  324 (335)
Q Consensus       301 ~~~~~~~~~~fd~V~~IllD~~cs  324 (335)
                      +....+....||.   |++.+.|.
T Consensus       132 g~~g~~~~apfD~---I~v~~a~~  152 (209)
T PF01135_consen  132 GSEGWPEEAPFDR---IIVTAAVP  152 (209)
T ss_dssp             GGGTTGGG-SEEE---EEESSBBS
T ss_pred             hhhccccCCCcCE---EEEeeccc
Confidence            9876555556775   88887665

1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....

>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase

Probab=99.13  E-value=5e-10  Score=100.67  Aligned_cols=83  Identities=19%  Similarity=0.392  Sum_probs=73.8

Q ss_pred             HHHHHcCCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCC
Q 019802          232 MVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAY  311 (335)
Q Consensus       232 l~~~~l~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~~~~~~f  311 (335)
                      .+...+.+++|.+|||+|||+|..+..+++..++.++|+++|+++.+++.+++++++.++++++++++|+.+++..+++|
T Consensus        36 ~~l~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~f  115 (231)
T TIGR02752        36 DTMKRMNVQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGLHNVELVHGNAMELPFDDNSF  115 (231)
T ss_pred             HHHHhcCCCCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEechhcCCCCCCCc
Confidence            34456778889999999999999999999987777899999999999999999999999989999999999887767788


Q ss_pred             ceE
Q 019802          312 SEV  314 (335)
Q Consensus       312 d~V  314 (335)
                      |.|
T Consensus       116 D~V  118 (231)
T TIGR02752       116 DYV  118 (231)
T ss_pred             cEE
Confidence            864

MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.

>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional

Probab=99.13  E-value=8.6e-11  Score=108.99  Aligned_cols=92  Identities=23%  Similarity=0.279  Sum_probs=77.7

Q ss_pred             HHHHcCCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCC-CCC
Q 019802          233 VAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKD-PAY  311 (335)
Q Consensus       233 ~~~~l~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~~~~-~~f  311 (335)
                      +...+.++||+.+||++||.||.|..+++.++++++|+|+|.++.+++.++++++.  ..+++++++|+.++.... ...
T Consensus        11 vl~~L~~~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~--~~ri~~i~~~f~~l~~~l~~~~   88 (296)
T PRK00050         11 VVDALAIKPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKP--FGRFTLVHGNFSNLKEVLAEGL   88 (296)
T ss_pred             HHHhhCCCCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhcc--CCcEEEEeCCHHHHHHHHHcCC
Confidence            45567788999999999999999999999987779999999999999999999876  467999999999875321 123


Q ss_pred             ceEEEEEEecccccc
Q 019802          312 SEVSLIFCIFTWMII  326 (335)
Q Consensus       312 d~V~~IllD~~cs~~  326 (335)
                      ..||+|++|+++|..
T Consensus        89 ~~vDgIl~DLGvSs~  103 (296)
T PRK00050         89 GKVDGILLDLGVSSP  103 (296)
T ss_pred             CccCEEEECCCcccc
Confidence            357789999999964

>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases

Probab=99.13  E-value=2.6e-10  Score=97.98  Aligned_cols=94  Identities=22%  Similarity=0.337  Sum_probs=77.1

Q ss_pred             CchHHHHHHHcCCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCC
Q 019802          227 GKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDP  306 (335)
Q Consensus       227 d~~s~l~~~~l~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~~  306 (335)
                      |.++.++...+...++.+|||+|||+|..+..++... +..+|+++|+++..++.+++|++..++.++++++.|..+...
T Consensus        17 d~~t~lL~~~l~~~~~~~vLDlG~G~G~i~~~la~~~-~~~~v~~vDi~~~a~~~a~~n~~~n~~~~v~~~~~d~~~~~~   95 (170)
T PF05175_consen   17 DAGTRLLLDNLPKHKGGRVLDLGCGSGVISLALAKRG-PDAKVTAVDINPDALELAKRNAERNGLENVEVVQSDLFEALP   95 (170)
T ss_dssp             HHHHHHHHHHHHHHTTCEEEEETSTTSHHHHHHHHTS-TCEEEEEEESBHHHHHHHHHHHHHTTCTTEEEEESSTTTTCC
T ss_pred             CHHHHHHHHHHhhccCCeEEEecCChHHHHHHHHHhC-CCCEEEEEcCCHHHHHHHHHHHHhcCcccccccccccccccc
Confidence            5678888887777789999999999999999999874 457899999999999999999999999889999999876443


Q ss_pred             CCCCCceEEEEEEeccccc
Q 019802          307 KDPAYSEVSLIFCIFTWMI  325 (335)
Q Consensus       307 ~~~~fd~V~~IllD~~cs~  325 (335)
                       ...||   .|+++||...
T Consensus        96 -~~~fD---~Iv~NPP~~~  110 (170)
T PF05175_consen   96 -DGKFD---LIVSNPPFHA  110 (170)
T ss_dssp             -TTCEE---EEEE---SBT
T ss_pred             -cccee---EEEEccchhc
Confidence             44565   5999999543

; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....

>PTZ00146 fibrillarin; Provisional

Probab=99.12  E-value=3.8e-10  Score=104.01  Aligned_cols=92  Identities=27%  Similarity=0.293  Sum_probs=68.6

Q ss_pred             hHHHHHHH------cCCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCC
Q 019802          229 ASSMVAAA------LAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFL  302 (335)
Q Consensus       229 ~s~l~~~~------l~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~  302 (335)
                      -|-|.+.+      +.+++|++|||+|||||.+|.|++..+++.++|+|+|+++++++.+.+.++..  +||.++..|+.
T Consensus       114 rSKlaa~i~~g~~~l~IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r--~NI~~I~~Da~  191 (293)
T PTZ00146        114 RSKLAAAIIGGVANIPIKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKR--PNIVPIIEDAR  191 (293)
T ss_pred             ccHHHHHHHCCcceeccCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhc--CCCEEEECCcc
Confidence            45555444      45789999999999999999999999988899999999998877766665533  58899999987


Q ss_pred             CCCCCCCCCceEEEEEEecc
Q 019802          303 NLDPKDPAYSEVSLIFCIFT  322 (335)
Q Consensus       303 ~~~~~~~~fd~V~~IllD~~  322 (335)
                      ...........||.||+|..
T Consensus       192 ~p~~y~~~~~~vDvV~~Dva  211 (293)
T PTZ00146        192 YPQKYRMLVPMVDVIFADVA  211 (293)
T ss_pred             ChhhhhcccCCCCEEEEeCC
Confidence            53210001123556899874

>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A

Probab=99.11  E-value=6.8e-10  Score=93.44  Aligned_cols=81  Identities=25%  Similarity=0.346  Sum_probs=68.2

Q ss_pred             CCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCC-CCCceEEEEE
Q 019802          240 KPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKD-PAYSEVSLIF  318 (335)
Q Consensus       240 ~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~~~~-~~fd~V~~Il  318 (335)
                      +.+.+|||+|||+|..+..++....+.++++++|+|+.+++.+++++++.+++|+++.++|+.+++... ..||   .|+
T Consensus         2 ~~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~ni~~~~~d~~~l~~~~~~~~D---~I~   78 (152)
T PF13847_consen    2 KSNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLDNIEFIQGDIEDLPQELEEKFD---III   78 (152)
T ss_dssp             TTTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTSTTEEEEESBTTCGCGCSSTTEE---EEE
T ss_pred             CCCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhcccccccccccceEEeehhccccccCCCee---EEE
Confidence            467899999999999999999766677899999999999999999999999999999999999966321 3455   577


Q ss_pred             Eeccc
Q 019802          319 CIFTW  323 (335)
Q Consensus       319 lD~~c  323 (335)
                      ++.++
T Consensus        79 ~~~~l   83 (152)
T PF13847_consen   79 SNGVL   83 (152)
T ss_dssp             EESTG
T ss_pred             EcCch
Confidence            77555

...

>PLN02233 ubiquinone biosynthesis methyltransferase

Probab=99.11  E-value=6.1e-10  Score=102.31  Aligned_cols=83  Identities=24%  Similarity=0.360  Sum_probs=70.4

Q ss_pred             HHHHcCCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHH---hCCCcEEEEeccCCCCCCCCC
Q 019802          233 VAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKL---SGAANIEVLHGDFLNLDPKDP  309 (335)
Q Consensus       233 ~~~~l~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~---~g~~ni~~~~~D~~~~~~~~~  309 (335)
                      +...+.+.++++|||+|||+|..+..+++.+++.++|+++|+|+.|++.++++...   .+..+++++++|+.+++..++
T Consensus        65 ~~~~~~~~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp~~~~  144 (261)
T PLN02233         65 AVSWSGAKMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDLPFDDC  144 (261)
T ss_pred             HHHHhCCCCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccCCCCCC
Confidence            34456778899999999999999999998877678999999999999999887642   345689999999999998888


Q ss_pred             CCceEE
Q 019802          310 AYSEVS  315 (335)
Q Consensus       310 ~fd~V~  315 (335)
                      +||.|.
T Consensus       145 sfD~V~  150 (261)
T PLN02233        145 YFDAIT  150 (261)
T ss_pred             CEeEEE
Confidence            898754

>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]

Probab=99.11  E-value=4.4e-10  Score=100.48  Aligned_cols=101  Identities=19%  Similarity=0.313  Sum_probs=88.4

Q ss_pred             cccceEEecCchHHHHHHHcCCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCc-EEE
Q 019802          218 IVNGCVFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAAN-IEV  296 (335)
Q Consensus       218 ~~~g~~~iQd~~s~l~~~~l~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~n-i~~  296 (335)
                      |+.+--.+--+.|.+++..++..||++|||+|+|+|..|..||..+++.|+|+.+|+.+..++.+++|++..|+.| |.+
T Consensus        71 ~~R~tQiIyPKD~~~I~~~~gi~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~  150 (256)
T COG2519          71 MKRRTQIIYPKDAGYIVARLGISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVTL  150 (256)
T ss_pred             CcCCCceecCCCHHHHHHHcCCCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccccceEE
Confidence            5555556666677788889999999999999999999999999988999999999999999999999999999987 999


Q ss_pred             EeccCCCCCCCCCCCceEEEEEEecc
Q 019802          297 LHGDFLNLDPKDPAYSEVSLIFCIFT  322 (335)
Q Consensus       297 ~~~D~~~~~~~~~~fd~V~~IllD~~  322 (335)
                      ..+|..+.-..+    .||+|+||.|
T Consensus       151 ~~~Dv~~~~~~~----~vDav~LDmp  172 (256)
T COG2519         151 KLGDVREGIDEE----DVDAVFLDLP  172 (256)
T ss_pred             Eecccccccccc----ccCEEEEcCC
Confidence            999998876554    4556999976

>TIGR01177 conserved hypothetical protein TIGR01177

Probab=99.10  E-value=5e-10  Score=106.31  Aligned_cols=90  Identities=16%  Similarity=0.195  Sum_probs=76.7

Q ss_pred             HHHHHHHcCCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCC
Q 019802          230 SSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDP  309 (335)
Q Consensus       230 s~l~~~~l~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~~~~~  309 (335)
                      +..++.+.++++|+.|||.|||+|+.+..++..   ..+|+++|+++.+++.++.|++..|+.++.+.++|+.+++..+.
T Consensus       171 a~~~~~l~~~~~g~~vLDp~cGtG~~lieaa~~---~~~v~g~Di~~~~~~~a~~nl~~~g~~~i~~~~~D~~~l~~~~~  247 (329)
T TIGR01177       171 ARAMVNLARVTEGDRVLDPFCGTGGFLIEAGLM---GAKVIGCDIDWKMVAGARINLEHYGIEDFFVKRGDATKLPLSSE  247 (329)
T ss_pred             HHHHHHHhCCCCcCEEEECCCCCCHHHHHHHHh---CCeEEEEcCCHHHHHHHHHHHHHhCCCCCeEEecchhcCCcccC
Confidence            344455667889999999999999998876653   46899999999999999999999999889999999999887666


Q ss_pred             CCceEEEEEEeccccc
Q 019802          310 AYSEVSLIFCIFTWMI  325 (335)
Q Consensus       310 ~fd~V~~IllD~~cs~  325 (335)
                      .||   .|++|||+..
T Consensus       248 ~~D---~Iv~dPPyg~  260 (329)
T TIGR01177       248 SVD---AIATDPPYGR  260 (329)
T ss_pred             CCC---EEEECCCCcC
Confidence            676   5999999864

This family is found exclusively in the Archaea.

>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]

Probab=99.10  E-value=1.2e-10  Score=98.69  Aligned_cols=83  Identities=24%  Similarity=0.430  Sum_probs=61.1

Q ss_pred             CEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCC-CcEEEEeccCCCCCCCCCCCce-EEEEEEe
Q 019802          243 WKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGA-ANIEVLHGDFLNLDPKDPAYSE-VSLIFCI  320 (335)
Q Consensus       243 ~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~-~ni~~~~~D~~~~~~~~~~fd~-V~~IllD  320 (335)
                      ..|+|+|||-||-|+++|...   .+|+|+|+++.|++.++.|++-+|+ ++|.++++|+.++..... ... +|+||++
T Consensus         1 ~~vlD~fcG~GGNtIqFA~~~---~~Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~~~~~-~~~~~D~vFlS   76 (163)
T PF09445_consen    1 TTVLDAFCGVGGNTIQFARTF---DRVIAIDIDPERLECAKHNAEVYGVADNIDFICGDFFELLKRLK-SNKIFDVVFLS   76 (163)
T ss_dssp             SEEEETT-TTSHHHHHHHHTT----EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHHGGGB-------SEEEE-
T ss_pred             CEEEEeccCcCHHHHHHHHhC---CeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHHHHhhcc-ccccccEEEEC
Confidence            369999999999999999873   4799999999999999999999997 479999999988654221 111 4579999


Q ss_pred             ccccccccc
Q 019802          321 FTWMIIMFH  329 (335)
Q Consensus       321 ~~cs~~g~~  329 (335)
                      |||-|....
T Consensus        77 PPWGGp~Y~   85 (163)
T PF09445_consen   77 PPWGGPSYS   85 (163)
T ss_dssp             --BSSGGGG
T ss_pred             CCCCCcccc
Confidence            999987664

Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.

>PRK04266 fibrillarin; Provisional

Probab=99.10  E-value=5e-10  Score=100.56  Aligned_cols=87  Identities=20%  Similarity=0.260  Sum_probs=67.8

Q ss_pred             HHHHHHH--cCCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCC-
Q 019802          230 SSMVAAA--LAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDP-  306 (335)
Q Consensus       230 s~l~~~~--l~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~~-  306 (335)
                      +.+++.+  +++++|++|||+|||+|+.+.+++..++ .|+|+|+|+++.|++.+.+++++.  .||.++.+|+..... 
T Consensus        59 ~~ll~~~~~l~i~~g~~VlD~G~G~G~~~~~la~~v~-~g~V~avD~~~~ml~~l~~~a~~~--~nv~~i~~D~~~~~~~  135 (226)
T PRK04266         59 AAILKGLKNFPIKKGSKVLYLGAASGTTVSHVSDIVE-EGVVYAVEFAPRPMRELLEVAEER--KNIIPILADARKPERY  135 (226)
T ss_pred             HHHHhhHhhCCCCCCCEEEEEccCCCHHHHHHHHhcC-CCeEEEEECCHHHHHHHHHHhhhc--CCcEEEECCCCCcchh
Confidence            3444433  7788999999999999999999999886 689999999999999988887754  689999999975311 


Q ss_pred             --CCCCCceEEEEEEecc
Q 019802          307 --KDPAYSEVSLIFCIFT  322 (335)
Q Consensus       307 --~~~~fd~V~~IllD~~  322 (335)
                        -..+||   .|+.|.+
T Consensus       136 ~~l~~~~D---~i~~d~~  150 (226)
T PRK04266        136 AHVVEKVD---VIYQDVA  150 (226)
T ss_pred             hhccccCC---EEEECCC
Confidence              112354   5777654

>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=99.09  E-value=8.9e-10  Score=103.80  Aligned_cols=86  Identities=20%  Similarity=0.286  Sum_probs=73.3

Q ss_pred             HHHcCCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCce
Q 019802          234 AAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSE  313 (335)
Q Consensus       234 ~~~l~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~~~~~~fd~  313 (335)
                      ...++++++++|||+|||+|..+..+++..+..+.|+++|+++.+++.++++++..|++++.++++|+....+....||.
T Consensus        73 l~~L~i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~nV~~i~gD~~~~~~~~~~fD~  152 (322)
T PRK13943         73 MEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIENVIFVCGDGYYGVPEFAPYDV  152 (322)
T ss_pred             HHhcCCCCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCChhhcccccCCccE
Confidence            34566889999999999999999999998876678999999999999999999999999999999999876655456765


Q ss_pred             EEEEEEecc
Q 019802          314 VSLIFCIFT  322 (335)
Q Consensus       314 V~~IllD~~  322 (335)
                         |+++..
T Consensus       153 ---Ii~~~g  158 (322)
T PRK13943        153 ---IFVTVG  158 (322)
T ss_pred             ---EEECCc
Confidence               666543

>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed

Probab=99.09  E-value=3.4e-10  Score=106.77  Aligned_cols=85  Identities=15%  Similarity=0.110  Sum_probs=71.5

Q ss_pred             HcCCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCC-CCCCCceE
Q 019802          236 ALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDP-KDPAYSEV  314 (335)
Q Consensus       236 ~l~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~~-~~~~fd~V  314 (335)
                      .+...++.+|||+|||+|..+..++..   ..+|+++|+++.+++.+++|++..|++|++++++|+.++.. ....||  
T Consensus       168 ~l~~~~~~~VLDl~cG~G~~sl~la~~---~~~V~gvD~s~~av~~A~~n~~~~~l~~v~~~~~D~~~~~~~~~~~~D--  242 (315)
T PRK03522        168 WVRELPPRSMWDLFCGVGGFGLHCATP---GMQLTGIEISAEAIACAKQSAAELGLTNVQFQALDSTQFATAQGEVPD--  242 (315)
T ss_pred             HHHhcCCCEEEEccCCCCHHHHHHHhc---CCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCHHHHHHhcCCCCe--
Confidence            344446789999999999999999984   36899999999999999999999999889999999987653 223465  


Q ss_pred             EEEEEecccccc
Q 019802          315 SLIFCIFTWMII  326 (335)
Q Consensus       315 ~~IllD~~cs~~  326 (335)
                       .|++|||+.|.
T Consensus       243 -~Vv~dPPr~G~  253 (315)
T PRK03522        243 -LVLVNPPRRGI  253 (315)
T ss_pred             -EEEECCCCCCc
Confidence             59999998864

>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=99.08  E-value=1.5e-09  Score=95.00  Aligned_cols=96  Identities=25%  Similarity=0.341  Sum_probs=82.2

Q ss_pred             cceEEecCchHHHHHHHcCCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEec
Q 019802          220 NGCVFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHG  299 (335)
Q Consensus       220 ~g~~~iQd~~s~l~~~~l~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~  299 (335)
                      .|.+.-|-.--..+..+|++++|++||++|||+|.-|..||++.   ++|+++|+.+.-.+.+++|++.+|+.||.++++
T Consensus        51 ~gqtis~P~~vA~m~~~L~~~~g~~VLEIGtGsGY~aAvla~l~---~~V~siEr~~~L~~~A~~~L~~lg~~nV~v~~g  127 (209)
T COG2518          51 CGQTISAPHMVARMLQLLELKPGDRVLEIGTGSGYQAAVLARLV---GRVVSIERIEELAEQARRNLETLGYENVTVRHG  127 (209)
T ss_pred             CCceecCcHHHHHHHHHhCCCCCCeEEEECCCchHHHHHHHHHh---CeEEEEEEcHHHHHHHHHHHHHcCCCceEEEEC
Confidence            56655555444556778999999999999999999999999995   499999999999999999999999999999999


Q ss_pred             cCCCCCCCCCCCceEEEEEEec
Q 019802          300 DFLNLDPKDPAYSEVSLIFCIF  321 (335)
Q Consensus       300 D~~~~~~~~~~fd~V~~IllD~  321 (335)
                      |+..--+....||.   |++.+
T Consensus       128 DG~~G~~~~aPyD~---I~Vta  146 (209)
T COG2518         128 DGSKGWPEEAPYDR---IIVTA  146 (209)
T ss_pred             CcccCCCCCCCcCE---EEEee
Confidence            99886666677996   66653

>PRK09634 nusB transcription antitermination protein NusB; Provisional

Probab=99.06  E-value=1.5e-09  Score=95.06  Aligned_cols=66  Identities=14%  Similarity=0.191  Sum_probs=56.6

Q ss_pred             ccCHHHHHHHHHHHHhchHHHHHHHhhccccc-----ccccchHHHHHHHHHHHHhcCCCCchhHHHHHHHHhh
Q 019802           67 VKNKKATYALVCQTLKHLSIIKQVLDSASILN-----SKWKRQEELVYILTYDILFGQEISLVGDAEKFLMLHK  135 (335)
Q Consensus        67 ~~dr~l~~~LV~gvlR~~~~LD~il~~~~ll~-----~~~~~~~~lLrl~lyqllf~~~iP~~a~v~~~v~~~k  135 (335)
                      .++++|+++|||||+||+..||++|++  +++     +.+...+.+||+|+||++|++ +|+++++++.|+..|
T Consensus       110 ~~~r~~a~~Lv~gvlr~~~~LD~iI~~--~l~~W~l~rL~~idr~ILRlavyELl~l~-~P~~vaINEAVeLAK  180 (207)
T PRK09634        110 EEVREYALERIGAVIRNRKEIDQLLDT--VMVGWQLKRLPRIDRDILRLAVVEILFLN-TPAAVAINEAVELAK  180 (207)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHH--HhccccccCCCHHHHHHHHHHHHHHHhcC-CCchhHHHHHHHHHH
Confidence            579999999999999999999999998  454     212345899999999999996 999999999987765

>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed

Probab=99.05  E-value=9.2e-10  Score=108.59  Aligned_cols=86  Identities=22%  Similarity=0.218  Sum_probs=73.1

Q ss_pred             HHcCCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCC----CCCCC
Q 019802          235 AALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLD----PKDPA  310 (335)
Q Consensus       235 ~~l~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~----~~~~~  310 (335)
                      ..+.+.+|++|||+|||+|..+..++...   .+|+++|+|+.+++.+++|++..|++|++++++|+.+..    ..+..
T Consensus       291 ~~l~~~~~~~VLDlgcGtG~~sl~la~~~---~~V~gvD~s~~al~~A~~n~~~~~~~~v~~~~~d~~~~l~~~~~~~~~  367 (443)
T PRK13168        291 EWLDPQPGDRVLDLFCGLGNFTLPLARQA---AEVVGVEGVEAMVERARENARRNGLDNVTFYHANLEEDFTDQPWALGG  367 (443)
T ss_pred             HHhcCCCCCEEEEEeccCCHHHHHHHHhC---CEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeChHHhhhhhhhhcCC
Confidence            34567789999999999999999999873   689999999999999999999999999999999997632    22345


Q ss_pred             CceEEEEEEecccccc
Q 019802          311 YSEVSLIFCIFTWMII  326 (335)
Q Consensus       311 fd~V~~IllD~~cs~~  326 (335)
                      ||   .|++|||.+|.
T Consensus       368 fD---~Vi~dPPr~g~  380 (443)
T PRK13168        368 FD---KVLLDPPRAGA  380 (443)
T ss_pred             CC---EEEECcCCcCh
Confidence            76   48999999874

>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed

Probab=99.04  E-value=2.7e-09  Score=94.87  Aligned_cols=97  Identities=24%  Similarity=0.235  Sum_probs=77.3

Q ss_pred             eEEecCchHHHHHHHcCCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccC
Q 019802          222 CVFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDF  301 (335)
Q Consensus       222 ~~~iQd~~s~l~~~~l~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~  301 (335)
                      .+..+-.....+...+.++++++|||+|||+|..+..++.+.   ++|+++|+++.+++.+++++++.|+.++++.++|+
T Consensus        59 ~~~~~p~~~~~l~~~l~~~~~~~VLeiG~GsG~~t~~la~~~---~~v~~vd~~~~~~~~a~~~~~~~~~~~v~~~~~d~  135 (212)
T PRK00312         59 QTISQPYMVARMTELLELKPGDRVLEIGTGSGYQAAVLAHLV---RRVFSVERIKTLQWEAKRRLKQLGLHNVSVRHGDG  135 (212)
T ss_pred             CeeCcHHHHHHHHHhcCCCCCCEEEEECCCccHHHHHHHHHh---CEEEEEeCCHHHHHHHHHHHHHCCCCceEEEECCc
Confidence            333343334455567888999999999999999999888874   48999999999999999999999999999999998


Q ss_pred             CCCCCCCCCCceEEEEEEecccc
Q 019802          302 LNLDPKDPAYSEVSLIFCIFTWM  324 (335)
Q Consensus       302 ~~~~~~~~~fd~V~~IllD~~cs  324 (335)
                      .+..+....||.   |+++.++.
T Consensus       136 ~~~~~~~~~fD~---I~~~~~~~  155 (212)
T PRK00312        136 WKGWPAYAPFDR---ILVTAAAP  155 (212)
T ss_pred             ccCCCcCCCcCE---EEEccCch
Confidence            764444456875   77776553

>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]

Probab=99.02  E-value=2e-09  Score=95.85  Aligned_cols=85  Identities=21%  Similarity=0.331  Sum_probs=75.4

Q ss_pred             HHHHcCCCCCCEEEEEcCCCchHHHHHHHHcCCC-----eEEEEEeCCHHHHHHHHHHHHHhCCC---cEEEEeccCCCC
Q 019802          233 VAAALAPKPGWKVLDACSAPGNKTVHLAALMKGK-----GKIVACELNKERVRRLKDTIKLSGAA---NIEVLHGDFLNL  304 (335)
Q Consensus       233 ~~~~l~~~~g~~VLD~cagpG~kt~~la~~~~~~-----g~i~a~D~~~~rl~~~~~~~~~~g~~---ni~~~~~D~~~~  304 (335)
                      .+.-|+|.+|.+|||+|+|+|..|+.+....++.     ++|+.+|++++||+..+++.++.++.   .+.++++|++++
T Consensus        92 ~v~~L~p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dAE~L  171 (296)
T KOG1540|consen   92 FVSKLGPGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGDAEDL  171 (296)
T ss_pred             hhhccCCCCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeCCcccC
Confidence            3556889999999999999999999999988764     89999999999999999999887773   389999999999


Q ss_pred             CCCCCCCceEEEE
Q 019802          305 DPKDPAYSEVSLI  317 (335)
Q Consensus       305 ~~~~~~fd~V~~I  317 (335)
                      |+++++||.++.-
T Consensus       172 pFdd~s~D~yTia  184 (296)
T KOG1540|consen  172 PFDDDSFDAYTIA  184 (296)
T ss_pred             CCCCCcceeEEEe
Confidence            9999999976543

>PRK07402 precorrin-6B methylase; Provisional

Probab=99.02  E-value=2.5e-09  Score=93.97  Aligned_cols=82  Identities=22%  Similarity=0.333  Sum_probs=72.3

Q ss_pred             ceEEecCchHHHHHHHcCCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEecc
Q 019802          221 GCVFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGD  300 (335)
Q Consensus       221 g~~~iQd~~s~l~~~~l~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D  300 (335)
                      |.-..|....+++...+++.++++|||+|||+|..+..++... +.++|+++|+++.+++.+++|+++.|+.+++++++|
T Consensus        20 ~~p~t~~~v~~~l~~~l~~~~~~~VLDiG~G~G~~~~~la~~~-~~~~V~~vD~s~~~~~~a~~n~~~~~~~~v~~~~~d   98 (196)
T PRK07402         20 GIPLTKREVRLLLISQLRLEPDSVLWDIGAGTGTIPVEAGLLC-PKGRVIAIERDEEVVNLIRRNCDRFGVKNVEVIEGS   98 (196)
T ss_pred             CCCCCHHHHHHHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHhCCCCeEEEECc
Confidence            4446677788878888888999999999999999999998764 458999999999999999999999999899999999


Q ss_pred             CCC
Q 019802          301 FLN  303 (335)
Q Consensus       301 ~~~  303 (335)
                      +.+
T Consensus        99 ~~~  101 (196)
T PRK07402         99 APE  101 (196)
T ss_pred             hHH
Confidence            865

>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed

Probab=99.01  E-value=2.9e-09  Score=92.87  Aligned_cols=74  Identities=22%  Similarity=0.286  Sum_probs=65.7

Q ss_pred             CCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCceEE
Q 019802          240 KPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVS  315 (335)
Q Consensus       240 ~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~~~~~~fd~V~  315 (335)
                      +++.+|||+|||+|..+..++... +.++|+++|+++.+++.++++++..|+++++++++|+.+++. .++||.|.
T Consensus        44 ~~g~~VLDiGcGtG~~al~la~~~-~~~~V~giD~s~~~l~~A~~~~~~~~l~~i~~~~~d~~~~~~-~~~fDlV~  117 (187)
T PRK00107         44 PGGERVLDVGSGAGFPGIPLAIAR-PELKVTLVDSLGKKIAFLREVAAELGLKNVTVVHGRAEEFGQ-EEKFDVVT  117 (187)
T ss_pred             CCCCeEEEEcCCCCHHHHHHHHHC-CCCeEEEEeCcHHHHHHHHHHHHHcCCCCEEEEeccHhhCCC-CCCccEEE
Confidence            348999999999999999999864 468999999999999999999999999889999999999876 66788643

>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional

Probab=99.01  E-value=8.5e-10  Score=106.91  Aligned_cols=103  Identities=15%  Similarity=0.151  Sum_probs=83.8

Q ss_pred             CcccccceEEecCchHHHHHHHcCCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCC--
Q 019802          215 HPLIVNGCVFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAA--  292 (335)
Q Consensus       215 ~~~~~~g~~~iQd~~s~l~~~~l~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~--  292 (335)
                      ..+.+.|.|.-|.....++..+   .+|.+|||+|||+|+.+.+++.  ++..+|+++|+|+.+++.+++|++..|+.  
T Consensus       197 ~~g~ktG~flDqr~~R~~~~~~---~~g~rVLDlfsgtG~~~l~aa~--~ga~~V~~VD~s~~al~~a~~N~~~Ngl~~~  271 (396)
T PRK15128        197 QGGHKTGYYLDQRDSRLATRRY---VENKRVLNCFSYTGGFAVSALM--GGCSQVVSVDTSQEALDIARQNVELNKLDLS  271 (396)
T ss_pred             ccccccCcChhhHHHHHHHHHh---cCCCeEEEeccCCCHHHHHHHh--CCCCEEEEEECCHHHHHHHHHHHHHcCCCCC
Confidence            4678999999997776666554   3588999999999999887653  44569999999999999999999999984  


Q ss_pred             cEEEEeccCCCCCC----CCCCCceEEEEEEeccccc
Q 019802          293 NIEVLHGDFLNLDP----KDPAYSEVSLIFCIFTWMI  325 (335)
Q Consensus       293 ni~~~~~D~~~~~~----~~~~fd~V~~IllD~~cs~  325 (335)
                      +++++++|+.++..    ....||.   |++|||+..
T Consensus       272 ~v~~i~~D~~~~l~~~~~~~~~fDl---VilDPP~f~  305 (396)
T PRK15128        272 KAEFVRDDVFKLLRTYRDRGEKFDV---IVMDPPKFV  305 (396)
T ss_pred             cEEEEEccHHHHHHHHHhcCCCCCE---EEECCCCCC
Confidence            79999999977532    2346875   899999853

>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional

Probab=99.00  E-value=3.2e-09  Score=93.50  Aligned_cols=86  Identities=20%  Similarity=0.290  Sum_probs=71.2

Q ss_pred             HHHHHcCCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhC-CCcEEEEeccCCCCCC-CCC
Q 019802          232 MVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSG-AANIEVLHGDFLNLDP-KDP  309 (335)
Q Consensus       232 l~~~~l~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g-~~ni~~~~~D~~~~~~-~~~  309 (335)
                      +....+++.++++|||+|||+|..+..++..+++.++|+++|+++.+++.+++|++..| ..++.++++|+.+..+ ...
T Consensus        31 ~~l~~l~~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~l~~~~~  110 (198)
T PRK00377         31 LALSKLRLRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEILFTINE  110 (198)
T ss_pred             HHHHHcCCCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhhHhhcCC
Confidence            33445788899999999999999999999887777899999999999999999999999 4789999999976432 234


Q ss_pred             CCceEEEEEEe
Q 019802          310 AYSEVSLIFCI  320 (335)
Q Consensus       310 ~fd~V~~IllD  320 (335)
                      .||.   |++.
T Consensus       111 ~~D~---V~~~  118 (198)
T PRK00377        111 KFDR---IFIG  118 (198)
T ss_pred             CCCE---EEEC
Confidence            5775   5553

>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit

Probab=98.99  E-value=6.3e-09  Score=83.63  Aligned_cols=83  Identities=25%  Similarity=0.344  Sum_probs=68.4

Q ss_pred             HHHcCCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCC-CCCCCCc
Q 019802          234 AAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLD-PKDPAYS  312 (335)
Q Consensus       234 ~~~l~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~-~~~~~fd  312 (335)
                      ...+.+.++++|||+|||+|..+..+++.+++ ++|+++|+++.+++.++++++..++.+++++.+|+.... ....+||
T Consensus        12 ~~~~~~~~~~~vldlG~G~G~~~~~l~~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D   90 (124)
T TIGR02469        12 LSKLRLRPGDVLWDIGAGSGSITIEAARLVPN-GRVYAIERNPEALRLIERNARRFGVSNIVIVEGDAPEALEDSLPEPD   90 (124)
T ss_pred             HHHcCCCCCCEEEEeCCCCCHHHHHHHHHCCC-ceEEEEcCCHHHHHHHHHHHHHhCCCceEEEeccccccChhhcCCCC
Confidence            44566778899999999999999999998654 899999999999999999999999988999999987532 2234677


Q ss_pred             eEEEEEEe
Q 019802          313 EVSLIFCI  320 (335)
Q Consensus       313 ~V~~IllD  320 (335)
                      .   |+++
T Consensus        91 ~---v~~~   95 (124)
T TIGR02469        91 R---VFIG   95 (124)
T ss_pred             E---EEEC
Confidence            5   5554

This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.

>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A

Probab=98.98  E-value=4e-09  Score=83.54  Aligned_cols=76  Identities=24%  Similarity=0.430  Sum_probs=61.3

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCC-CcEEEEeccC-CCCCCCCCCCceEEEEE
Q 019802          241 PGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGA-ANIEVLHGDF-LNLDPKDPAYSEVSLIF  318 (335)
Q Consensus       241 ~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~-~ni~~~~~D~-~~~~~~~~~fd~V~~Il  318 (335)
                      ||.+|||+|||+|..+..+++.. +..+|+++|+|+.+++.+++++.+.+. .+|.++++|+ ...... ..||   .|+
T Consensus         1 p~~~vLDlGcG~G~~~~~l~~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~-~~~D---~v~   75 (112)
T PF12847_consen    1 PGGRVLDLGCGTGRLSIALARLF-PGARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDAEFDPDFL-EPFD---LVI   75 (112)
T ss_dssp             TTCEEEEETTTTSHHHHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCCHGGTTTS-SCEE---EEE
T ss_pred             CCCEEEEEcCcCCHHHHHHHhcC-CCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECccccCcccC-CCCC---EEE
Confidence            68999999999999999999953 458999999999999999999966655 6799999999 333322 2355   577


Q ss_pred             Eec
Q 019802          319 CIF  321 (335)
Q Consensus       319 lD~  321 (335)
                      +..
T Consensus        76 ~~~   78 (112)
T PF12847_consen   76 CSG   78 (112)
T ss_dssp             ECS
T ss_pred             ECC
Confidence            665

...

>COG4123 Predicted O-methyltransferase [General function prediction only]

Probab=98.98  E-value=2e-09  Score=96.84  Aligned_cols=98  Identities=19%  Similarity=0.232  Sum_probs=83.0

Q ss_pred             hHHHHHHHcCCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCC-cEEEEeccCCCCCCC
Q 019802          229 ASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAA-NIEVLHGDFLNLDPK  307 (335)
Q Consensus       229 ~s~l~~~~l~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~-ni~~~~~D~~~~~~~  307 (335)
                      .+.+++....+....+|||+|||.|..++.+|.+..+ .+|+++|+++.+.+.+++|++-.++. +|++++.|+.++...
T Consensus        32 DaiLL~~~~~~~~~~~IlDlGaG~G~l~L~la~r~~~-a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~  110 (248)
T COG4123          32 DAILLAAFAPVPKKGRILDLGAGNGALGLLLAQRTEK-AKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKA  110 (248)
T ss_pred             HHHHHHhhcccccCCeEEEecCCcCHHHHHHhccCCC-CcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhhc
Confidence            4788888888888999999999999999999998654 89999999999999999999987774 599999999998754


Q ss_pred             CCCCceEEEEEEecccccccc
Q 019802          308 DPAYSEVSLIFCIFTWMIIMF  328 (335)
Q Consensus       308 ~~~fd~V~~IllD~~cs~~g~  328 (335)
                      .. ++.+|.|+++||---.|.
T Consensus       111 ~~-~~~fD~Ii~NPPyf~~~~  130 (248)
T COG4123         111 LV-FASFDLIICNPPYFKQGS  130 (248)
T ss_pred             cc-ccccCEEEeCCCCCCCcc
Confidence            32 444556999999765554

>TIGR00138 gidB 16S rRNA methyltransferase GidB

Probab=98.96  E-value=5.2e-09  Score=90.89  Aligned_cols=75  Identities=24%  Similarity=0.311  Sum_probs=64.6

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCceEEEEEEe
Q 019802          241 PGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVSLIFCI  320 (335)
Q Consensus       241 ~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~~~~~~fd~V~~IllD  320 (335)
                      +|.+|||+|||+|..+..++.. .+.++|+++|+++.+++.+++++++.|+.|++++++|+.++.. ..+||.   |+++
T Consensus        42 ~~~~vLDiGcGtG~~s~~la~~-~~~~~V~~iD~s~~~~~~a~~~~~~~~~~~i~~i~~d~~~~~~-~~~fD~---I~s~  116 (181)
T TIGR00138        42 DGKKVIDIGSGAGFPGIPLAIA-RPELKLTLLESNHKKVAFLREVKAELGLNNVEIVNGRAEDFQH-EEQFDV---ITSR  116 (181)
T ss_pred             CCCeEEEecCCCCccHHHHHHH-CCCCeEEEEeCcHHHHHHHHHHHHHhCCCCeEEEecchhhccc-cCCccE---EEeh
Confidence            4889999999999999999865 4568999999999999999999999999889999999998743 456875   5554

GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.

>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed

Probab=98.95  E-value=5.1e-09  Score=96.65  Aligned_cols=78  Identities=23%  Similarity=0.319  Sum_probs=69.8

Q ss_pred             cCCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCceE
Q 019802          237 LAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEV  314 (335)
Q Consensus       237 l~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~~~~~~fd~V  314 (335)
                      ..+.+|++|||+|||+|..+..++..++..++|+++|+++.+++.++++....|+.++.+..+|+.+++..+.+||.|
T Consensus        73 ~~~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~~v~~~~~d~~~l~~~~~~fD~V  150 (272)
T PRK11873         73 AELKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYTNVEFRLGEIEALPVADNSVDVI  150 (272)
T ss_pred             ccCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCCCEEEEEcchhhCCCCCCceeEE
Confidence            456789999999999999888888887777899999999999999999999999989999999999988766678754

>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed

Probab=98.93  E-value=2.7e-09  Score=94.26  Aligned_cols=79  Identities=20%  Similarity=0.152  Sum_probs=66.9

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccC-CCCC--CCCCCCceEEEE
Q 019802          241 PGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDF-LNLD--PKDPAYSEVSLI  317 (335)
Q Consensus       241 ~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~-~~~~--~~~~~fd~V~~I  317 (335)
                      ++.+|||+|||+|..+..+++..+ ..+|+++|+|+.+++.++++++..++.|++++++|+ ..++  ..+.+||.|...
T Consensus        40 ~~~~VLDiGcGtG~~~~~la~~~p-~~~v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~D~V~~~  118 (202)
T PRK00121         40 DAPIHLEIGFGKGEFLVEMAKANP-DINFIGIEVHEPGVGKALKKIEEEGLTNLRLLCGDAVEVLLDMFPDGSLDRIYLN  118 (202)
T ss_pred             CCCeEEEEccCCCHHHHHHHHHCC-CccEEEEEechHHHHHHHHHHHHcCCCCEEEEecCHHHHHHHHcCccccceEEEE
Confidence            678999999999999999998764 579999999999999999999999998999999999 6665  445678876544


Q ss_pred             EEe
Q 019802          318 FCI  320 (335)
Q Consensus       318 llD  320 (335)
                      +.|
T Consensus       119 ~~~  121 (202)
T PRK00121        119 FPD  121 (202)
T ss_pred             CCC
Confidence            434

>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A

Probab=98.93  E-value=2e-09  Score=86.01  Aligned_cols=80  Identities=20%  Similarity=0.238  Sum_probs=67.3

Q ss_pred             CCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCC-CcEEEEeccCCCCC--CCCCCCceEEEEE
Q 019802          242 GWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGA-ANIEVLHGDFLNLD--PKDPAYSEVSLIF  318 (335)
Q Consensus       242 g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~-~ni~~~~~D~~~~~--~~~~~fd~V~~Il  318 (335)
                      |.+|||+|||+|..+.++++..  ..+++++|+++..++.++.++...++ .+++++++|+.+..  ..+..   ++.|+
T Consensus         1 g~~vlD~~~G~G~~~~~~~~~~--~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~---~D~Iv   75 (117)
T PF13659_consen    1 GDRVLDPGCGSGTFLLAALRRG--AARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEPLPDGK---FDLIV   75 (117)
T ss_dssp             TEEEEEETSTTCHHHHHHHHHC--TCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTCTTT----EEEEE
T ss_pred             CCEEEEcCcchHHHHHHHHHHC--CCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhhccCce---eEEEE
Confidence            6789999999999999999884  58999999999999999999999988 57999999998876  33444   55699


Q ss_pred             Eecccccc
Q 019802          319 CIFTWMII  326 (335)
Q Consensus       319 lD~~cs~~  326 (335)
                      +|||....
T Consensus        76 ~npP~~~~   83 (117)
T PF13659_consen   76 TNPPYGPR   83 (117)
T ss_dssp             E--STTSB
T ss_pred             ECCCCccc
Confidence            99999864

...

>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific

Probab=98.93  E-value=8.2e-09  Score=95.98  Aligned_cols=84  Identities=17%  Similarity=0.313  Sum_probs=69.5

Q ss_pred             CCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCC-cEEEEeccCCCCCCCCCCCceEEEE
Q 019802          239 PKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAA-NIEVLHGDFLNLDPKDPAYSEVSLI  317 (335)
Q Consensus       239 ~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~-ni~~~~~D~~~~~~~~~~fd~V~~I  317 (335)
                      +.++.+|||+|||+|..+..++...+ +.+|+++|+|+.+++.+++|+++.|+. +|.++++|+.+.. ...+||   .|
T Consensus       119 ~~~~~~vLDlG~GsG~i~~~la~~~~-~~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~~~-~~~~fD---~I  193 (284)
T TIGR03533       119 PEPVKRILDLCTGSGCIAIACAYAFP-EAEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFAAL-PGRKYD---LI  193 (284)
T ss_pred             cCCCCEEEEEeCchhHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhcc-CCCCcc---EE
Confidence            34567999999999999999998754 579999999999999999999999985 6999999986532 233465   59


Q ss_pred             EEeccccccc
Q 019802          318 FCIFTWMIIM  327 (335)
Q Consensus       318 llD~~cs~~g  327 (335)
                      ++|||+...+
T Consensus       194 v~NPPy~~~~  203 (284)
T TIGR03533       194 VSNPPYVDAE  203 (284)
T ss_pred             EECCCCCCcc
Confidence            9999987544

Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.

>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]

Probab=98.91  E-value=7.6e-09  Score=94.81  Aligned_cols=85  Identities=20%  Similarity=0.319  Sum_probs=74.3

Q ss_pred             chHHHHHHHcCCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCC-cEEEEeccCCCCCC
Q 019802          228 KASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAA-NIEVLHGDFLNLDP  306 (335)
Q Consensus       228 ~~s~l~~~~l~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~-ni~~~~~D~~~~~~  306 (335)
                      ..-..++..+.++||++|||+|||-|+.+..+|+..  +.+|+++++|++..+.++++++..|+. +|++...|-.++..
T Consensus        59 ~k~~~~~~kl~L~~G~~lLDiGCGWG~l~~~aA~~y--~v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~rd~~e  136 (283)
T COG2230          59 AKLDLILEKLGLKPGMTLLDIGCGWGGLAIYAAEEY--GVTVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYRDFEE  136 (283)
T ss_pred             HHHHHHHHhcCCCCCCEEEEeCCChhHHHHHHHHHc--CCEEEEeeCCHHHHHHHHHHHHHcCCCcccEEEecccccccc
Confidence            334566777889999999999999999999999986  479999999999999999999999997 89999999888765


Q ss_pred             CCCCCceEEEE
Q 019802          307 KDPAYSEVSLI  317 (335)
Q Consensus       307 ~~~~fd~V~~I  317 (335)
                      .   ||+|..|
T Consensus       137 ~---fDrIvSv  144 (283)
T COG2230         137 P---FDRIVSV  144 (283)
T ss_pred             c---cceeeeh
Confidence            4   9987554

>smart00650 rADc Ribosomal RNA adenine dimethylases

Probab=98.90  E-value=1e-08  Score=87.97  Aligned_cols=84  Identities=24%  Similarity=0.349  Sum_probs=71.1

Q ss_pred             HHHHcCCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCc
Q 019802          233 VAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYS  312 (335)
Q Consensus       233 ~~~~l~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~~~~~~fd  312 (335)
                      ++..+++.++++|||+|||+|..|.++++.   .++++++|+++.+++.+++++..  ..+++++++|+.+++..+..||
T Consensus         5 i~~~~~~~~~~~vLEiG~G~G~lt~~l~~~---~~~v~~vE~~~~~~~~~~~~~~~--~~~v~ii~~D~~~~~~~~~~~d   79 (169)
T smart00650        5 IVRAANLRPGDTVLEIGPGKGALTEELLER---AARVTAIEIDPRLAPRLREKFAA--ADNLTVIHGDALKFDLPKLQPY   79 (169)
T ss_pred             HHHhcCCCCcCEEEEECCCccHHHHHHHhc---CCeEEEEECCHHHHHHHHHHhcc--CCCEEEEECchhcCCccccCCC
Confidence            455677888999999999999999999987   36899999999999999999864  4579999999999887655566


Q ss_pred             eEEEEEEecccc
Q 019802          313 EVSLIFCIFTWM  324 (335)
Q Consensus       313 ~V~~IllD~~cs  324 (335)
                      .   |+.|+|-.
T Consensus        80 ~---vi~n~Py~   88 (169)
T smart00650       80 K---VVGNLPYN   88 (169)
T ss_pred             E---EEECCCcc
Confidence            4   77888765

>PRK11207 tellurite resistance protein TehB; Provisional

Probab=98.89  E-value=1.5e-08  Score=89.18  Aligned_cols=84  Identities=21%  Similarity=0.129  Sum_probs=70.2

Q ss_pred             HHHHHHHcCCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCC
Q 019802          230 SSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDP  309 (335)
Q Consensus       230 s~l~~~~l~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~~~~~  309 (335)
                      +..+...+...++.+|||+|||+|..+.++++.   ..+|+++|+|+.+++.++++++..++.++++.+.|+.++++. .
T Consensus        19 ~~~l~~~l~~~~~~~vLDiGcG~G~~a~~La~~---g~~V~gvD~S~~~i~~a~~~~~~~~~~~v~~~~~d~~~~~~~-~   94 (197)
T PRK11207         19 HSEVLEAVKVVKPGKTLDLGCGNGRNSLYLAAN---GFDVTAWDKNPMSIANLERIKAAENLDNLHTAVVDLNNLTFD-G   94 (197)
T ss_pred             hHHHHHhcccCCCCcEEEECCCCCHHHHHHHHC---CCEEEEEeCCHHHHHHHHHHHHHcCCCcceEEecChhhCCcC-C
Confidence            344555667778899999999999999999975   368999999999999999999999998899999999887654 4


Q ss_pred             CCceEEEE
Q 019802          310 AYSEVSLI  317 (335)
Q Consensus       310 ~fd~V~~I  317 (335)
                      .||.|.+.
T Consensus        95 ~fD~I~~~  102 (197)
T PRK11207         95 EYDFILST  102 (197)
T ss_pred             CcCEEEEe
Confidence            58875443

>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated

Probab=98.89  E-value=1.7e-08  Score=87.97  Aligned_cols=90  Identities=17%  Similarity=0.237  Sum_probs=72.0

Q ss_pred             ecCchHHHHHHHcCCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCC
Q 019802          225 LQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNL  304 (335)
Q Consensus       225 iQd~~s~l~~~~l~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~  304 (335)
                      .++.....+...+++.++.+|||+|||+|..+..++... ++++|+++|+++.+++.+++|+++.++.+++++++|+.. 
T Consensus        15 ~~~~~r~~~~~~l~~~~~~~vLDiG~G~G~~~~~la~~~-~~~~v~~vD~s~~~~~~a~~n~~~~~~~~i~~~~~d~~~-   92 (187)
T PRK08287         15 TKEEVRALALSKLELHRAKHLIDVGAGTGSVSIEAALQF-PSLQVTAIERNPDALRLIKENRQRFGCGNIDIIPGEAPI-   92 (187)
T ss_pred             chHHHHHHHHHhcCCCCCCEEEEECCcCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHhCCCCeEEEecCchh-
Confidence            344444555667788899999999999999999999874 458999999999999999999999998889999998853 


Q ss_pred             CCCCCCCceEEEEEEe
Q 019802          305 DPKDPAYSEVSLIFCI  320 (335)
Q Consensus       305 ~~~~~~fd~V~~IllD  320 (335)
                      .. ...||.   |+++
T Consensus        93 ~~-~~~~D~---v~~~  104 (187)
T PRK08287         93 EL-PGKADA---IFIG  104 (187)
T ss_pred             hc-CcCCCE---EEEC
Confidence            22 235775   5554

>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA

Probab=98.88  E-value=5.5e-09  Score=102.76  Aligned_cols=86  Identities=24%  Similarity=0.239  Sum_probs=72.2

Q ss_pred             HHHcCCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCC----CCC
Q 019802          234 AAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDP----KDP  309 (335)
Q Consensus       234 ~~~l~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~~----~~~  309 (335)
                      ...+.+.++++|||+|||+|..+..++...   .+|+++|+++.+++.+++|++..|++|++++++|+.+..+    .+.
T Consensus       285 ~~~l~~~~~~~vLDl~cG~G~~sl~la~~~---~~V~~vE~~~~av~~a~~n~~~~~~~nv~~~~~d~~~~l~~~~~~~~  361 (431)
T TIGR00479       285 LEALELQGEELVVDAYCGVGTFTLPLAKQA---KSVVGIEVVPESVEKAQQNAELNGIANVEFLAGTLETVLPKQPWAGQ  361 (431)
T ss_pred             HHHhccCCCCEEEEcCCCcCHHHHHHHHhC---CEEEEEEcCHHHHHHHHHHHHHhCCCceEEEeCCHHHHHHHHHhcCC
Confidence            334567788999999999999999999863   5899999999999999999999999999999999976321    233


Q ss_pred             CCceEEEEEEeccccc
Q 019802          310 AYSEVSLIFCIFTWMI  325 (335)
Q Consensus       310 ~fd~V~~IllD~~cs~  325 (335)
                      +||   .|++|||..|
T Consensus       362 ~~D---~vi~dPPr~G  374 (431)
T TIGR00479       362 IPD---VLLLDPPRKG  374 (431)
T ss_pred             CCC---EEEECcCCCC
Confidence            566   5899999876

This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.

>PLN02244 tocopherol O-methyltransferase

Probab=98.88  E-value=1.4e-08  Score=96.81  Aligned_cols=75  Identities=17%  Similarity=0.157  Sum_probs=67.1

Q ss_pred             CCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCC-cEEEEeccCCCCCCCCCCCceEEE
Q 019802          240 KPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAA-NIEVLHGDFLNLDPKDPAYSEVSL  316 (335)
Q Consensus       240 ~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~-ni~~~~~D~~~~~~~~~~fd~V~~  316 (335)
                      .++.+|||+|||+|+.+.++++..  ..+|+++|+|+.+++.++++++..|+. +++++++|+.++++.+++||.|.+
T Consensus       117 ~~~~~VLDiGCG~G~~~~~La~~~--g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~FD~V~s  192 (340)
T PLN02244        117 KRPKRIVDVGCGIGGSSRYLARKY--GANVKGITLSPVQAARANALAAAQGLSDKVSFQVADALNQPFEDGQFDLVWS  192 (340)
T ss_pred             CCCCeEEEecCCCCHHHHHHHHhc--CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCcccCCCCCCCccEEEE
Confidence            678999999999999999999875  469999999999999999999988874 699999999999888888997643

>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional

Probab=98.88  E-value=9.3e-09  Score=90.53  Aligned_cols=79  Identities=13%  Similarity=0.159  Sum_probs=65.5

Q ss_pred             CCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCC-CCCCCceEEEEE
Q 019802          240 KPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDP-KDPAYSEVSLIF  318 (335)
Q Consensus       240 ~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~~-~~~~fd~V~~Il  318 (335)
                      .++.+|||+|||+|..+..++...  ..+|+++|+++..++.+++|++.+|+.+++++++|+.+... ....||   .|+
T Consensus        52 ~~~~~vLDl~~GsG~l~l~~lsr~--a~~V~~vE~~~~a~~~a~~Nl~~~~~~~v~~~~~D~~~~l~~~~~~fD---lV~  126 (199)
T PRK10909         52 IVDARCLDCFAGSGALGLEALSRY--AAGATLLEMDRAVAQQLIKNLATLKAGNARVVNTNALSFLAQPGTPHN---VVF  126 (199)
T ss_pred             cCCCEEEEcCCCccHHHHHHHHcC--CCEEEEEECCHHHHHHHHHHHHHhCCCcEEEEEchHHHHHhhcCCCce---EEE
Confidence            568899999999999998655542  46999999999999999999999999899999999976432 223454   699


Q ss_pred             Eeccc
Q 019802          319 CIFTW  323 (335)
Q Consensus       319 lD~~c  323 (335)
                      +|||-
T Consensus       127 ~DPPy  131 (199)
T PRK10909        127 VDPPF  131 (199)
T ss_pred             ECCCC
Confidence            99994

>TIGR00537 hemK_rel_arch HemK-related putative methylase

Probab=98.87  E-value=1.5e-08  Score=87.60  Aligned_cols=89  Identities=18%  Similarity=0.253  Sum_probs=73.1

Q ss_pred             CchHHHHHHHcCCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCC
Q 019802          227 GKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDP  306 (335)
Q Consensus       227 d~~s~l~~~~l~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~~  306 (335)
                      ...+.++...+...++.+|||+|||+|..+..+++..   .+|+++|+++.+++.+++|++..++ +++++++|+.+...
T Consensus         5 ~~d~~~l~~~l~~~~~~~vLdlG~G~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~~   80 (179)
T TIGR00537         5 AEDSLLLEANLRELKPDDVLEIGAGTGLVAIRLKGKG---KCILTTDINPFAVKELRENAKLNNV-GLDVVMTDLFKGVR   80 (179)
T ss_pred             CccHHHHHHHHHhcCCCeEEEeCCChhHHHHHHHhcC---CEEEEEECCHHHHHHHHHHHHHcCC-ceEEEEcccccccC
Confidence            3445677777777788999999999999999998862   2899999999999999999998887 68999999876542


Q ss_pred             CCCCCceEEEEEEecccc
Q 019802          307 KDPAYSEVSLIFCIFTWM  324 (335)
Q Consensus       307 ~~~~fd~V~~IllD~~cs  324 (335)
                        .+||   .|++++|+.
T Consensus        81 --~~fD---~Vi~n~p~~   93 (179)
T TIGR00537        81 --GKFD---VILFNPPYL   93 (179)
T ss_pred             --Cccc---EEEECCCCC
Confidence              3576   488998874

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.

>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific

Probab=98.86  E-value=1.7e-08  Score=91.63  Aligned_cols=83  Identities=17%  Similarity=0.227  Sum_probs=70.2

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCceEEEEEEe
Q 019802          241 PGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVSLIFCI  320 (335)
Q Consensus       241 ~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~~~~~~fd~V~~IllD  320 (335)
                      .+.+|||+|||+|..+..++...+ ...++++|+++.+++.++++++..|+.++.++++|+.+. ....+||   .|++|
T Consensus        87 ~~~~ilDig~G~G~~~~~l~~~~~-~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~-~~~~~fD---~Vi~n  161 (251)
T TIGR03534        87 GPLRVLDLGTGSGAIALALAKERP-DARVTAVDISPEALAVARKNAARLGLDNVTFLQSDWFEP-LPGGKFD---LIVSN  161 (251)
T ss_pred             CCCeEEEEeCcHhHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhcc-CcCCcee---EEEEC
Confidence            456899999999999999998754 469999999999999999999999998899999999763 2334455   59999


Q ss_pred             cccccccc
Q 019802          321 FTWMIIMF  328 (335)
Q Consensus       321 ~~cs~~g~  328 (335)
                      ||+...+.
T Consensus       162 pPy~~~~~  169 (251)
T TIGR03534       162 PPYIPEAD  169 (251)
T ss_pred             CCCCchhh
Confidence            99987553

Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.

>PRK14967 putative methyltransferase; Provisional

Probab=98.86  E-value=1.7e-08  Score=90.50  Aligned_cols=88  Identities=26%  Similarity=0.492  Sum_probs=69.3

Q ss_pred             HHHHHHHc---CCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCC
Q 019802          230 SSMVAAAL---APKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDP  306 (335)
Q Consensus       230 s~l~~~~l---~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~~  306 (335)
                      ++++...+   ...++++|||+|||+|..+..++..  +.++|+++|+++.+++.+++|++..|. ++.++++|+.+.. 
T Consensus        22 s~~l~~~l~~~~~~~~~~vLDlGcG~G~~~~~la~~--~~~~v~~vD~s~~~l~~a~~n~~~~~~-~~~~~~~d~~~~~-   97 (223)
T PRK14967         22 TQLLADALAAEGLGPGRRVLDLCTGSGALAVAAAAA--GAGSVTAVDISRRAVRSARLNALLAGV-DVDVRRGDWARAV-   97 (223)
T ss_pred             HHHHHHHHHhcccCCCCeEEEecCCHHHHHHHHHHc--CCCeEEEEECCHHHHHHHHHHHHHhCC-eeEEEECchhhhc-
Confidence            34444433   4678899999999999999998875  335999999999999999999999887 5889999987643 


Q ss_pred             CCCCCceEEEEEEecccc
Q 019802          307 KDPAYSEVSLIFCIFTWM  324 (335)
Q Consensus       307 ~~~~fd~V~~IllD~~cs  324 (335)
                      .+..||   .|++|+|..
T Consensus        98 ~~~~fD---~Vi~npPy~  112 (223)
T PRK14967         98 EFRPFD---VVVSNPPYV  112 (223)
T ss_pred             cCCCee---EEEECCCCC
Confidence            334566   588997643

>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase

Probab=98.85  E-value=2e-08  Score=87.13  Aligned_cols=94  Identities=19%  Similarity=0.260  Sum_probs=69.3

Q ss_pred             chHHHHHHHcCCCCCCEEEEEcCCCchHHHHHHHHcCCCe--------EEEEEeCCHHHHHHHHHHHHHhCCCc-EEEEe
Q 019802          228 KASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKG--------KIVACELNKERVRRLKDTIKLSGAAN-IEVLH  298 (335)
Q Consensus       228 ~~s~l~~~~l~~~~g~~VLD~cagpG~kt~~la~~~~~~g--------~i~a~D~~~~rl~~~~~~~~~~g~~n-i~~~~  298 (335)
                      .-+..+..+.++++|+.|||-+||+|+..+..+....+..        +++++|+++++++.+++|++..|+.. |.+.+
T Consensus        15 ~lA~~ll~la~~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~~~i~~~~   94 (179)
T PF01170_consen   15 TLAAALLNLAGWRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVEDYIDFIQ   94 (179)
T ss_dssp             HHHHHHHHHTT--TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-CGGEEEEE
T ss_pred             HHHHHHHHHhCCCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccCCceEEEe
Confidence            3455666778899999999999999999988876654433        49999999999999999999999864 89999


Q ss_pred             ccCCCCCCCCCCCceEEEEEEecccc
Q 019802          299 GDFLNLDPKDPAYSEVSLIFCIFTWM  324 (335)
Q Consensus       299 ~D~~~~~~~~~~fd~V~~IllD~~cs  324 (335)
                      .|+.+++..+.++|   .|+.|||.-
T Consensus        95 ~D~~~l~~~~~~~d---~IvtnPPyG  117 (179)
T PF01170_consen   95 WDARELPLPDGSVD---AIVTNPPYG  117 (179)
T ss_dssp             --GGGGGGTTSBSC---EEEEE--ST
T ss_pred             cchhhcccccCCCC---EEEECcchh
Confidence            99999995555566   599999974

It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.

>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A

Probab=98.85  E-value=4.7e-09  Score=82.03  Aligned_cols=69  Identities=19%  Similarity=0.297  Sum_probs=57.8

Q ss_pred             EEEEcCCCchHHHHHHHHc--CCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCceE
Q 019802          245 VLDACSAPGNKTVHLAALM--KGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEV  314 (335)
Q Consensus       245 VLD~cagpG~kt~~la~~~--~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~~~~~~fd~V  314 (335)
                      |||+|||+|..+..++...  ++..+++++|+|+.+++.++++....+. +++++++|+.++++.+++||.|
T Consensus         1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~-~~~~~~~D~~~l~~~~~~~D~v   71 (101)
T PF13649_consen    1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGP-KVRFVQADARDLPFSDGKFDLV   71 (101)
T ss_dssp             -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTT-TSEEEESCTTCHHHHSSSEEEE
T ss_pred             CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCC-ceEEEECCHhHCcccCCCeeEE
Confidence            7999999999999999987  2337999999999999999999999888 7999999999998777778863

>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=98.83  E-value=2.8e-08  Score=93.40  Aligned_cols=81  Identities=16%  Similarity=0.279  Sum_probs=68.0

Q ss_pred             CCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCC-cEEEEeccCCCCCCCCCCCceEEEEEEe
Q 019802          242 GWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAA-NIEVLHGDFLNLDPKDPAYSEVSLIFCI  320 (335)
Q Consensus       242 g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~-ni~~~~~D~~~~~~~~~~fd~V~~IllD  320 (335)
                      +.+|||+|||+|..+..++... +..+|+++|+|+.+++.+++|+++.|+. +|+++++|+.+..+ ..+||   .|++|
T Consensus       134 ~~~VLDlG~GsG~iai~la~~~-p~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~l~-~~~fD---lIvsN  208 (307)
T PRK11805        134 VTRILDLCTGSGCIAIACAYAF-PDAEVDAVDISPDALAVAEINIERHGLEDRVTLIESDLFAALP-GRRYD---LIVSN  208 (307)
T ss_pred             CCEEEEEechhhHHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhhhCC-CCCcc---EEEEC
Confidence            3689999999999999999875 4579999999999999999999999985 59999999865332 23566   59999


Q ss_pred             ccccccc
Q 019802          321 FTWMIIM  327 (335)
Q Consensus       321 ~~cs~~g  327 (335)
                      ||+.+.+
T Consensus       209 PPyi~~~  215 (307)
T PRK11805        209 PPYVDAE  215 (307)
T ss_pred             CCCCCcc
Confidence            9998754

>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]

Probab=98.83  E-value=3.5e-08  Score=84.59  Aligned_cols=89  Identities=17%  Similarity=0.213  Sum_probs=70.8

Q ss_pred             CchHHHH--HHHcCCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCC
Q 019802          227 GKASSMV--AAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNL  304 (335)
Q Consensus       227 d~~s~l~--~~~l~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~  304 (335)
                      +.++.++  +++.+.-.|..|+|+|||+|..++..+-+  +..+|+|+|++++.++.+++|+++++ .+|.+++.|+.++
T Consensus        29 ~~Aa~il~~a~~~g~l~g~~V~DlG~GTG~La~ga~~l--Ga~~V~~vdiD~~a~ei~r~N~~~l~-g~v~f~~~dv~~~  105 (198)
T COG2263          29 PLAAYILWVAYLRGDLEGKTVLDLGAGTGILAIGAALL--GASRVLAVDIDPEALEIARANAEELL-GDVEFVVADVSDF  105 (198)
T ss_pred             HHHHHHHHHHHHcCCcCCCEEEEcCCCcCHHHHHHHhc--CCcEEEEEecCHHHHHHHHHHHHhhC-CceEEEEcchhhc
Confidence            4444443  33445567889999999999999987765  35799999999999999999999944 4799999999988


Q ss_pred             CCCCCCCceEEEEEEecccc
Q 019802          305 DPKDPAYSEVSLIFCIFTWM  324 (335)
Q Consensus       305 ~~~~~~fd~V~~IllD~~cs  324 (335)
                      ...   ||   .++.|||.-
T Consensus       106 ~~~---~d---tvimNPPFG  119 (198)
T COG2263         106 RGK---FD---TVIMNPPFG  119 (198)
T ss_pred             CCc---cc---eEEECCCCc
Confidence            743   55   588899864

>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional

Probab=98.82  E-value=3.1e-08  Score=95.24  Aligned_cols=93  Identities=11%  Similarity=0.093  Sum_probs=75.9

Q ss_pred             CchHHHHHHHcCCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCC---CcEEEEeccCCC
Q 019802          227 GKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGA---ANIEVLHGDFLN  303 (335)
Q Consensus       227 d~~s~l~~~~l~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~---~ni~~~~~D~~~  303 (335)
                      |.++.+....+....+.+|||+|||+|..+..+++.. +..+|+++|+|+.+++.+++|++..+.   .++++...|+..
T Consensus       214 D~GtrllL~~lp~~~~~~VLDLGCGtGvi~i~la~~~-P~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~  292 (378)
T PRK15001        214 DIGARFFMQHLPENLEGEIVDLGCGNGVIGLTLLDKN-PQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALS  292 (378)
T ss_pred             ChHHHHHHHhCCcccCCeEEEEeccccHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEccccc
Confidence            7788888888876667899999999999999999884 568999999999999999999988764   368889888854


Q ss_pred             CCCCCCCCceEEEEEEecccc
Q 019802          304 LDPKDPAYSEVSLIFCIFTWM  324 (335)
Q Consensus       304 ~~~~~~~fd~V~~IllD~~cs  324 (335)
                      .. ...+||   .|+++||.-
T Consensus       293 ~~-~~~~fD---lIlsNPPfh  309 (378)
T PRK15001        293 GV-EPFRFN---AVLCNPPFH  309 (378)
T ss_pred             cC-CCCCEE---EEEECcCcc
Confidence            32 223455   699999864

>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4)

Probab=98.81  E-value=1.7e-08  Score=93.24  Aligned_cols=83  Identities=22%  Similarity=0.334  Sum_probs=63.6

Q ss_pred             HHHHHHHcCCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCc-EEEEeccCCCCCCCC
Q 019802          230 SSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAAN-IEVLHGDFLNLDPKD  308 (335)
Q Consensus       230 s~l~~~~l~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~n-i~~~~~D~~~~~~~~  308 (335)
                      -..+...++++||++|||+|||-|+.+.++++..  +.+|+++.+|+...+.+++.+++.|+.+ +++...|..+++.  
T Consensus        51 ~~~~~~~~~l~~G~~vLDiGcGwG~~~~~~a~~~--g~~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~~~~--  126 (273)
T PF02353_consen   51 LDLLCEKLGLKPGDRVLDIGCGWGGLAIYAAERY--GCHVTGITLSEEQAEYARERIREAGLEDRVEVRLQDYRDLPG--  126 (273)
T ss_dssp             HHHHHTTTT--TT-EEEEES-TTSHHHHHHHHHH----EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG-----
T ss_pred             HHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHc--CcEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeeccccCC--
Confidence            3466677889999999999999999999999986  3799999999999999999999999964 9999999988765  


Q ss_pred             CCCceEEEE
Q 019802          309 PAYSEVSLI  317 (335)
Q Consensus       309 ~~fd~V~~I  317 (335)
                       +||+|..|
T Consensus       127 -~fD~IvSi  134 (273)
T PF02353_consen  127 -KFDRIVSI  134 (273)
T ss_dssp             -S-SEEEEE
T ss_pred             -CCCEEEEE
Confidence             69997666

All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....

>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific

Probab=98.81  E-value=2.2e-08  Score=91.45  Aligned_cols=82  Identities=20%  Similarity=0.276  Sum_probs=65.0

Q ss_pred             CCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCceEEEEEEec
Q 019802          242 GWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVSLIFCIF  321 (335)
Q Consensus       242 g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~~~~~~fd~V~~IllD~  321 (335)
                      +.+|||+|||+|..+..++...+ ..+|+++|+|+.+++.+++|++..|.   +++++|+.+...... -..+|.|++||
T Consensus        87 ~~~vLDlg~GsG~i~l~la~~~~-~~~v~~vDis~~al~~A~~N~~~~~~---~~~~~D~~~~l~~~~-~~~fDlVv~NP  161 (251)
T TIGR03704        87 TLVVVDLCCGSGAVGAALAAALD-GIELHAADIDPAAVRCARRNLADAGG---TVHEGDLYDALPTAL-RGRVDILAANA  161 (251)
T ss_pred             CCEEEEecCchHHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHHcCC---EEEEeechhhcchhc-CCCEeEEEECC
Confidence            45899999999999999998754 36899999999999999999998763   688899876432110 12345799999


Q ss_pred             ccccccc
Q 019802          322 TWMIIMF  328 (335)
Q Consensus       322 ~cs~~g~  328 (335)
                      ||..++.
T Consensus       162 Py~~~~~  168 (251)
T TIGR03704       162 PYVPTDA  168 (251)
T ss_pred             CCCCchh
Confidence            9987654

This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.

>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=98.79  E-value=1.2e-08  Score=99.65  Aligned_cols=90  Identities=20%  Similarity=0.160  Sum_probs=78.2

Q ss_pred             HHHHHcCCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCC---
Q 019802          232 MVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKD---  308 (335)
Q Consensus       232 l~~~~l~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~~~~---  308 (335)
                      .+...++..++++|||+-||.|++|.+||..   ..+|+++|+++..++.+++|++..|+.|+.+..+|++++....   
T Consensus       284 ~a~~~~~~~~~~~vlDlYCGvG~f~l~lA~~---~~~V~gvEi~~~aV~~A~~NA~~n~i~N~~f~~~~ae~~~~~~~~~  360 (432)
T COG2265         284 TALEWLELAGGERVLDLYCGVGTFGLPLAKR---VKKVHGVEISPEAVEAAQENAAANGIDNVEFIAGDAEEFTPAWWEG  360 (432)
T ss_pred             HHHHHHhhcCCCEEEEeccCCChhhhhhccc---CCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEeCCHHHHhhhcccc
Confidence            3444666778999999999999999999965   4689999999999999999999999999999999999987654   


Q ss_pred             CCCceEEEEEEeccccccc
Q 019802          309 PAYSEVSLIFCIFTWMIIM  327 (335)
Q Consensus       309 ~~fd~V~~IllD~~cs~~g  327 (335)
                      ..+|   .|++|||=+|.+
T Consensus       361 ~~~d---~VvvDPPR~G~~  376 (432)
T COG2265         361 YKPD---VVVVDPPRAGAD  376 (432)
T ss_pred             CCCC---EEEECCCCCCCC
Confidence            3455   599999998876

>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]

Probab=98.79  E-value=4.3e-08  Score=90.18  Aligned_cols=92  Identities=22%  Similarity=0.281  Sum_probs=77.5

Q ss_pred             CchHHHHHHHcCCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCC
Q 019802          227 GKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDP  306 (335)
Q Consensus       227 d~~s~l~~~~l~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~~  306 (335)
                      |..|++....+....+.+|||+|||.|-.++.+++.. +..+|+-+|+|...++.+++|++..++++..+...|..+-- 
T Consensus       144 D~GS~lLl~~l~~~~~~~vlDlGCG~Gvlg~~la~~~-p~~~vtmvDvn~~Av~~ar~Nl~~N~~~~~~v~~s~~~~~v-  221 (300)
T COG2813         144 DKGSRLLLETLPPDLGGKVLDLGCGYGVLGLVLAKKS-PQAKLTLVDVNARAVESARKNLAANGVENTEVWASNLYEPV-  221 (300)
T ss_pred             ChHHHHHHHhCCccCCCcEEEeCCCccHHHHHHHHhC-CCCeEEEEecCHHHHHHHHHhHHHcCCCccEEEEecccccc-
Confidence            8899999999998888899999999999999999985 47899999999999999999999999988655555553322 


Q ss_pred             CCCCCceEEEEEEecccc
Q 019802          307 KDPAYSEVSLIFCIFTWM  324 (335)
Q Consensus       307 ~~~~fd~V~~IllD~~cs  324 (335)
                      .+ +||.   |+++||--
T Consensus       222 ~~-kfd~---IisNPPfh  235 (300)
T COG2813         222 EG-KFDL---IISNPPFH  235 (300)
T ss_pred             cc-cccE---EEeCCCcc
Confidence            22 5775   99999854

>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase

Probab=98.79  E-value=1.7e-08  Score=88.60  Aligned_cols=78  Identities=21%  Similarity=0.200  Sum_probs=65.5

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCC---CCCCCceEEEE
Q 019802          241 PGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDP---KDPAYSEVSLI  317 (335)
Q Consensus       241 ~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~~---~~~~fd~V~~I  317 (335)
                      ...+|||+|||+|..+..++... +++.++++|+++.+++.+++++++.|+.|++++++|+.++..   .+.++   +.|
T Consensus        16 ~~~~ilDiGcG~G~~~~~la~~~-p~~~v~gvD~~~~~l~~a~~~~~~~~l~ni~~i~~d~~~~~~~~~~~~~~---d~v   91 (194)
T TIGR00091        16 KAPLHLEIGCGKGRFLIDMAKQN-PDKNFLGIEIHTPIVLAANNKANKLGLKNLHVLCGDANELLDKFFPDGSL---SKV   91 (194)
T ss_pred             CCceEEEeCCCccHHHHHHHHhC-CCCCEEEEEeeHHHHHHHHHHHHHhCCCCEEEEccCHHHHHHhhCCCCce---eEE
Confidence            45699999999999999999875 568999999999999999999999999999999999987542   22344   457


Q ss_pred             EEecc
Q 019802          318 FCIFT  322 (335)
Q Consensus       318 llD~~  322 (335)
                      ++++|
T Consensus        92 ~~~~p   96 (194)
T TIGR00091        92 FLNFP   96 (194)
T ss_pred             EEECC
Confidence            77764

In E. coli, this protein flanks the DNA repair protein MutY, also called micA.

>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2

Probab=98.78  E-value=1.1e-08  Score=97.84  Aligned_cols=91  Identities=21%  Similarity=0.269  Sum_probs=62.5

Q ss_pred             HHHHcCCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCC---CC
Q 019802          233 VAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPK---DP  309 (335)
Q Consensus       233 ~~~~l~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~~~---~~  309 (335)
                      +...+++.++ .|||++||.|..|..+|..   ..+|+|+|+++..++.+++|++..|++|++++++++.++...   ..
T Consensus       189 ~~~~l~~~~~-~vlDlycG~G~fsl~la~~---~~~V~gvE~~~~av~~A~~Na~~N~i~n~~f~~~~~~~~~~~~~~~r  264 (352)
T PF05958_consen  189 ALEWLDLSKG-DVLDLYCGVGTFSLPLAKK---AKKVIGVEIVEEAVEDARENAKLNGIDNVEFIRGDAEDFAKALAKAR  264 (352)
T ss_dssp             HHHHCTT-TT-EEEEES-TTTCCHHHHHCC---SSEEEEEES-HHHHHHHHHHHHHTT--SEEEEE--SHHCCCHHCCS-
T ss_pred             HHHHhhcCCC-cEEEEeecCCHHHHHHHhh---CCeEEEeeCCHHHHHHHHHHHHHcCCCcceEEEeeccchhHHHHhhH
Confidence            3445666666 8999999999999999876   368999999999999999999999999999999887654321   00


Q ss_pred             CC----------ceEEEEEEeccccccc
Q 019802          310 AY----------SEVSLIFCIFTWMIIM  327 (335)
Q Consensus       310 ~f----------d~V~~IllD~~cs~~g  327 (335)
                      .|          ..++.|++|||=+|.+
T Consensus       265 ~~~~~~~~~~~~~~~d~vilDPPR~G~~  292 (352)
T PF05958_consen  265 EFNRLKGIDLKSFKFDAVILDPPRAGLD  292 (352)
T ss_dssp             GGTTGGGS-GGCTTESEEEE---TT-SC
T ss_pred             HHHhhhhhhhhhcCCCEEEEcCCCCCch
Confidence            01          1356799999998865

1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.

>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB

Probab=98.78  E-value=2.1e-08  Score=96.82  Aligned_cols=83  Identities=14%  Similarity=0.126  Sum_probs=69.0

Q ss_pred             cCCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCC-CCCCceEE
Q 019802          237 LAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPK-DPAYSEVS  315 (335)
Q Consensus       237 l~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~~~-~~~fd~V~  315 (335)
                      ++..++.+|||+|||.|..+..++..   ..+|+++|+++..++.+++|++..|++|++++++|+.++... ...||   
T Consensus       229 l~~~~~~~vLDL~cG~G~~~l~la~~---~~~v~~vE~~~~av~~a~~N~~~~~~~~~~~~~~d~~~~~~~~~~~~D---  302 (374)
T TIGR02085       229 VREIPVTQMWDLFCGVGGFGLHCAGP---DTQLTGIEIESEAIACAQQSAQMLGLDNLSFAALDSAKFATAQMSAPE---  302 (374)
T ss_pred             HHhcCCCEEEEccCCccHHHHHHhhc---CCeEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHHhcCCCCC---
Confidence            34456789999999999999999864   368999999999999999999999999999999999775432 13465   


Q ss_pred             EEEEeccccc
Q 019802          316 LIFCIFTWMI  325 (335)
Q Consensus       316 ~IllD~~cs~  325 (335)
                      .|++|||-.|
T Consensus       303 ~vi~DPPr~G  312 (374)
T TIGR02085       303 LVLVNPPRRG  312 (374)
T ss_pred             EEEECCCCCC
Confidence            5999999753

This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.

>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional

Probab=98.77  E-value=5.8e-08  Score=93.81  Aligned_cols=92  Identities=18%  Similarity=0.240  Sum_probs=71.6

Q ss_pred             HHHHHHcC-CCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCC-CC
Q 019802          231 SMVAAALA-PKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDP-KD  308 (335)
Q Consensus       231 ~l~~~~l~-~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~~-~~  308 (335)
                      .++..++. ..++.+|||+|||+|..+..++... +..+|+++|+|+.+++.+++|+++.|. +++++++|+.+... ..
T Consensus       240 ~LVe~aL~~l~~~~rVLDLGcGSG~IaiaLA~~~-p~a~VtAVDiS~~ALe~AreNa~~~g~-rV~fi~gDl~e~~l~~~  317 (423)
T PRK14966        240 HLVEAVLARLPENGRVWDLGTGSGAVAVTVALER-PDAFVRASDISPPALETARKNAADLGA-RVEFAHGSWFDTDMPSE  317 (423)
T ss_pred             HHHHHhhhccCCCCEEEEEeChhhHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcCC-cEEEEEcchhccccccC
Confidence            34443333 3467799999999999999988764 457999999999999999999999887 79999999866432 22


Q ss_pred             CCCceEEEEEEeccccccc
Q 019802          309 PAYSEVSLIFCIFTWMIIM  327 (335)
Q Consensus       309 ~~fd~V~~IllD~~cs~~g  327 (335)
                      ..||   .|++|||-..++
T Consensus       318 ~~FD---LIVSNPPYI~~~  333 (423)
T PRK14966        318 GKWD---IIVSNPPYIENG  333 (423)
T ss_pred             CCcc---EEEECCCCCCcc
Confidence            3455   599999986544

>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]

Probab=98.76  E-value=6.9e-08  Score=86.82  Aligned_cols=93  Identities=18%  Similarity=0.264  Sum_probs=80.2

Q ss_pred             HHHHHHHcCCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCC-CcEEEEeccCCCCCCCC
Q 019802          230 SSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGA-ANIEVLHGDFLNLDPKD  308 (335)
Q Consensus       230 s~l~~~~l~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~-~ni~~~~~D~~~~~~~~  308 (335)
                      ..++...|+..||.+|++.|+|.|+.+..++..+++.|+++.+|+++.|.+.+.+.+++.|+ +|+.+.+-|....-+..
T Consensus        94 ia~I~~~L~i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi~~~vt~~hrDVc~~GF~~  173 (314)
T KOG2915|consen   94 IAMILSMLEIRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGIGDNVTVTHRDVCGSGFLI  173 (314)
T ss_pred             HHHHHHHhcCCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCCCcceEEEEeecccCCccc
Confidence            44677889999999999999999999999999999999999999999999999999999998 57999999987766543


Q ss_pred             CCCceEEEEEEeccc
Q 019802          309 PAYSEVSLIFCIFTW  323 (335)
Q Consensus       309 ~~fd~V~~IllD~~c  323 (335)
                      . --.+|+|+||.|-
T Consensus       174 k-s~~aDaVFLDlPa  187 (314)
T KOG2915|consen  174 K-SLKADAVFLDLPA  187 (314)
T ss_pred             c-ccccceEEEcCCC
Confidence            2 1245679999664

>TIGR00006 S-adenosyl-methyltransferase MraW

Probab=98.75  E-value=2.9e-08  Score=92.36  Aligned_cols=92  Identities=13%  Similarity=0.190  Sum_probs=77.3

Q ss_pred             HHHHcCCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCC--CCC
Q 019802          233 VAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPK--DPA  310 (335)
Q Consensus       233 ~~~~l~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~~~--~~~  310 (335)
                      +...|.+++|+.++|+.+|-||.|..|++.+++ |+|+|+|.++..++.++++++..+ .+++++++++.++...  ...
T Consensus        12 vl~~L~~~~ggiyVD~TlG~GGHS~~iL~~l~~-g~vigiD~D~~Al~~ak~~L~~~~-~R~~~i~~nF~~l~~~l~~~~   89 (305)
T TIGR00006        12 VVEGLNIKPDGIYIDCTLGFGGHSKAILEQLGT-GRLIGIDRDPQAIAFAKERLSDFE-GRVVLIHDNFANFFEHLDELL   89 (305)
T ss_pred             HHHhcCcCCCCEEEEeCCCChHHHHHHHHhCCC-CEEEEEcCCHHHHHHHHHHHhhcC-CcEEEEeCCHHHHHHHHHhcC
Confidence            345677899999999999999999999998865 999999999999999999998764 4699999999887632  223


Q ss_pred             CceEEEEEEecccccc
Q 019802          311 YSEVSLIFCIFTWMII  326 (335)
Q Consensus       311 fd~V~~IllD~~cs~~  326 (335)
                      .+.||+|++|.++|..
T Consensus        90 ~~~vDgIl~DLGvSS~  105 (305)
T TIGR00006        90 VTKIDGILVDLGVSSP  105 (305)
T ss_pred             CCcccEEEEeccCCHh
Confidence            4568889999999964

Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.

>PLN02781 Probable caffeoyl-CoA O-methyltransferase

Probab=98.75  E-value=3e-08  Score=89.59  Aligned_cols=90  Identities=18%  Similarity=0.207  Sum_probs=75.2

Q ss_pred             hHHHHHHHcCCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCC-cEEEEeccCCCCCC-
Q 019802          229 ASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAA-NIEVLHGDFLNLDP-  306 (335)
Q Consensus       229 ~s~l~~~~l~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~-ni~~~~~D~~~~~~-  306 (335)
                      ..+++..++...++.+|||+|||.|.-+..++..++++|+|+++|+++++++.+++|+++.|+. +|+++.+|+.+.-+ 
T Consensus        56 ~g~~L~~l~~~~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~~  135 (234)
T PLN02781         56 EGLFLSMLVKIMNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALDQ  135 (234)
T ss_pred             HHHHHHHHHHHhCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHH
Confidence            3555666666677889999999999999999998888899999999999999999999999985 59999999977421 


Q ss_pred             -----CCCCCceEEEEEEec
Q 019802          307 -----KDPAYSEVSLIFCIF  321 (335)
Q Consensus       307 -----~~~~fd~V~~IllD~  321 (335)
                           ...+||.   ||+|.
T Consensus       136 l~~~~~~~~fD~---VfiDa  152 (234)
T PLN02781        136 LLNNDPKPEFDF---AFVDA  152 (234)
T ss_pred             HHhCCCCCCCCE---EEECC
Confidence                 1346875   78885

>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional

Probab=98.75  E-value=4.6e-08  Score=93.82  Aligned_cols=84  Identities=13%  Similarity=0.129  Sum_probs=70.0

Q ss_pred             HcCCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCC--CCCCCCce
Q 019802          236 ALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLD--PKDPAYSE  313 (335)
Q Consensus       236 ~l~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~--~~~~~fd~  313 (335)
                      .+....+..+||+|||+|..+.++|... ++..++|+|+++.+++.+.+++.+.|++||.++++|+..+.  ..++++|.
T Consensus       117 ~~~~~~~p~vLEIGcGsG~~ll~lA~~~-P~~~~iGIEI~~~~i~~a~~ka~~~gL~NV~~i~~DA~~ll~~~~~~s~D~  195 (390)
T PRK14121        117 FISKNQEKILIEIGFGSGRHLLYQAKNN-PNKLFIGIEIHTPSIEQVLKQIELLNLKNLLIINYDARLLLELLPSNSVEK  195 (390)
T ss_pred             HhcCCCCCeEEEEcCcccHHHHHHHHhC-CCCCEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHhhhhCCCCceeE
Confidence            3455667899999999999999999985 56899999999999999999999999999999999997652  34455655


Q ss_pred             EEEEEEeccc
Q 019802          314 VSLIFCIFTW  323 (335)
Q Consensus       314 V~~IllD~~c  323 (335)
                         |++.+|+
T Consensus       196 ---I~lnFPd  202 (390)
T PRK14121        196 ---IFVHFPV  202 (390)
T ss_pred             ---EEEeCCC
Confidence               6666654

>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=98.74  E-value=1e-07  Score=87.88  Aligned_cols=86  Identities=21%  Similarity=0.258  Sum_probs=70.0

Q ss_pred             CCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCceEEEE
Q 019802          238 APKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVSLI  317 (335)
Q Consensus       238 ~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~~~~~~fd~V~~I  317 (335)
                      ...++.+|||+|||+|..+..++... +..+++++|+++.+++.+++|++.....++.++++|+..... ..+||   .|
T Consensus       105 ~~~~~~~vLDiG~GsG~~~~~la~~~-~~~~v~~iDis~~~l~~a~~n~~~~~~~~i~~~~~d~~~~~~-~~~fD---~I  179 (275)
T PRK09328        105 LLKEPLRVLDLGTGSGAIALALAKER-PDAEVTAVDISPEALAVARRNAKHGLGARVEFLQGDWFEPLP-GGRFD---LI  179 (275)
T ss_pred             cccCCCEEEEEcCcHHHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHhCCCCcEEEEEccccCcCC-CCcee---EE
Confidence            45678899999999999999999886 458999999999999999999984444579999999865432 33455   59


Q ss_pred             EEecccccccc
Q 019802          318 FCIFTWMIIMF  328 (335)
Q Consensus       318 llD~~cs~~g~  328 (335)
                      +++||+...+.
T Consensus       180 v~npPy~~~~~  190 (275)
T PRK09328        180 VSNPPYIPEAD  190 (275)
T ss_pred             EECCCcCCcch
Confidence            99999987654

>PLN02476 O-methyltransferase

Probab=98.74  E-value=2.9e-08  Score=91.32  Aligned_cols=96  Identities=17%  Similarity=0.237  Sum_probs=80.9

Q ss_pred             EecCchHHHHHHHcCCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCC-cEEEEeccCC
Q 019802          224 FLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAA-NIEVLHGDFL  302 (335)
Q Consensus       224 ~iQd~~s~l~~~~l~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~-ni~~~~~D~~  302 (335)
                      .+.....++...++...+..+|||+|++.|..|.+++..++++|+|+++|.++++.+.+++|+++.|+. +|+++.+|+.
T Consensus       101 ~v~~~~g~lL~~L~~~~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~  180 (278)
T PLN02476        101 QVSPDQAQLLAMLVQILGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAA  180 (278)
T ss_pred             ccCHHHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHH
Confidence            444556677777777778899999999999999999999988899999999999999999999999996 6999999997


Q ss_pred             CCCC------CCCCCceEEEEEEecc
Q 019802          303 NLDP------KDPAYSEVSLIFCIFT  322 (335)
Q Consensus       303 ~~~~------~~~~fd~V~~IllD~~  322 (335)
                      +.-+      ...+||.   ||+|+.
T Consensus       181 e~L~~l~~~~~~~~FD~---VFIDa~  203 (278)
T PLN02476        181 ESLKSMIQNGEGSSYDF---AFVDAD  203 (278)
T ss_pred             HHHHHHHhcccCCCCCE---EEECCC
Confidence            7432      1246775   999976

>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional

Probab=98.74  E-value=2e-08  Score=104.32  Aligned_cols=104  Identities=14%  Similarity=0.181  Sum_probs=84.1

Q ss_pred             CcccccceEEecCchHHHHHHHcCCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCC--
Q 019802          215 HPLIVNGCVFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAA--  292 (335)
Q Consensus       215 ~~~~~~g~~~iQd~~s~l~~~~l~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~--  292 (335)
                      ..+.+.|.|.-|...-.++....   +|.+|||+|||+|+.+.+++..  +..+|+++|+|+.+++.+++|++..|+.  
T Consensus       515 ~~~~~tG~flDqr~~R~~~~~~~---~g~rVLDlf~gtG~~sl~aa~~--Ga~~V~~vD~s~~al~~a~~N~~~ng~~~~  589 (702)
T PRK11783        515 TDYLDTGLFLDHRPTRRMIGQMA---KGKDFLNLFAYTGTASVHAALG--GAKSTTTVDMSNTYLEWAERNFALNGLSGR  589 (702)
T ss_pred             CCCCcceECHHHHHHHHHHHHhc---CCCeEEEcCCCCCHHHHHHHHC--CCCEEEEEeCCHHHHHHHHHHHHHhCCCcc
Confidence            34567888888877777766554   4889999999999999999874  3457999999999999999999999985  


Q ss_pred             cEEEEeccCCCCCC-CCCCCceEEEEEEecccccc
Q 019802          293 NIEVLHGDFLNLDP-KDPAYSEVSLIFCIFTWMII  326 (335)
Q Consensus       293 ni~~~~~D~~~~~~-~~~~fd~V~~IllD~~cs~~  326 (335)
                      +++++++|+.++.. ....||.   |++|||.-+.
T Consensus       590 ~v~~i~~D~~~~l~~~~~~fDl---IilDPP~f~~  621 (702)
T PRK11783        590 QHRLIQADCLAWLKEAREQFDL---IFIDPPTFSN  621 (702)
T ss_pred             ceEEEEccHHHHHHHcCCCcCE---EEECCCCCCC
Confidence            69999999876431 1345774   9999998654

>TIGR00536 hemK_fam HemK family putative methylases

Probab=98.74  E-value=7.8e-08  Score=89.46  Aligned_cols=80  Identities=10%  Similarity=0.186  Sum_probs=67.1

Q ss_pred             CCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCc-EEEEeccCCCCCCCCCCCceEEEEEEe
Q 019802          242 GWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAAN-IEVLHGDFLNLDPKDPAYSEVSLIFCI  320 (335)
Q Consensus       242 g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~n-i~~~~~D~~~~~~~~~~fd~V~~IllD  320 (335)
                      +.+|||+|||+|..+..++...+ ..+|+++|+|+.+++.+++|+++.++.+ +.++++|+.+.. ....||   .|+.|
T Consensus       115 ~~~vLDlG~GsG~i~l~la~~~~-~~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~~~~-~~~~fD---lIvsN  189 (284)
T TIGR00536       115 ILHILDLGTGSGCIALALAYEFP-NAEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLFEPL-AGQKID---IIVSN  189 (284)
T ss_pred             CCEEEEEeccHhHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhccC-cCCCcc---EEEEC
Confidence            36999999999999999998754 4799999999999999999999999865 999999987632 222466   58999


Q ss_pred             cccccc
Q 019802          321 FTWMII  326 (335)
Q Consensus       321 ~~cs~~  326 (335)
                      ||.-..
T Consensus       190 PPyi~~  195 (284)
T TIGR00536       190 PPYIDE  195 (284)
T ss_pred             CCCCCc
Confidence            998754

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.

>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]

Probab=98.73  E-value=7.6e-08  Score=89.23  Aligned_cols=78  Identities=14%  Similarity=0.270  Sum_probs=64.2

Q ss_pred             EEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCceEEEEEEeccc
Q 019802          244 KVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVSLIFCIFTW  323 (335)
Q Consensus       244 ~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~~~~~~fd~V~~IllD~~c  323 (335)
                      +|||+|||+|..++.++... +...|+|+|+|+..++.+++|++++|+.++.++..|....-..  .||   .|+++||.
T Consensus       113 ~ilDlGTGSG~iai~la~~~-~~~~V~a~Dis~~Al~~A~~Na~~~~l~~~~~~~~dlf~~~~~--~fD---lIVsNPPY  186 (280)
T COG2890         113 RILDLGTGSGAIAIALAKEG-PDAEVIAVDISPDALALARENAERNGLVRVLVVQSDLFEPLRG--KFD---LIVSNPPY  186 (280)
T ss_pred             cEEEecCChHHHHHHHHhhC-cCCeEEEEECCHHHHHHHHHHHHHcCCccEEEEeeecccccCC--cee---EEEeCCCC
Confidence            79999999999999999875 4579999999999999999999999987777777775443322  465   59999998


Q ss_pred             cccc
Q 019802          324 MIIM  327 (335)
Q Consensus       324 s~~g  327 (335)
                      -..-
T Consensus       187 ip~~  190 (280)
T COG2890         187 IPAE  190 (280)
T ss_pred             CCCc
Confidence            6543

>PTZ00338 dimethyladenosine transferase-like protein; Provisional

Probab=98.72  E-value=6.9e-08  Score=90.07  Aligned_cols=96  Identities=25%  Similarity=0.313  Sum_probs=77.8

Q ss_pred             EEecCchHHHHHHHcCCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhC-CCcEEEEeccC
Q 019802          223 VFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSG-AANIEVLHGDF  301 (335)
Q Consensus       223 ~~iQd~~s~l~~~~l~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g-~~ni~~~~~D~  301 (335)
                      |.++..-...++..+++.+++.|||+|||+|..|..+++.   ..+|+|+|+|+.+++.+++++...+ ..+++++++|+
T Consensus        18 FL~d~~i~~~Iv~~~~~~~~~~VLEIG~G~G~LT~~Ll~~---~~~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~Da   94 (294)
T PTZ00338         18 ILKNPLVLDKIVEKAAIKPTDTVLEIGPGTGNLTEKLLQL---AKKVIAIEIDPRMVAELKKRFQNSPLASKLEVIEGDA   94 (294)
T ss_pred             ccCCHHHHHHHHHhcCCCCcCEEEEecCchHHHHHHHHHh---CCcEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECCH
Confidence            3344444556677778889999999999999999999886   3579999999999999999998877 46899999999


Q ss_pred             CCCCCCCCCCceEEEEEEecccccc
Q 019802          302 LNLDPKDPAYSEVSLIFCIFTWMII  326 (335)
Q Consensus       302 ~~~~~~~~~fd~V~~IllD~~cs~~  326 (335)
                      .+.+..  .||   .|+.++|...+
T Consensus        95 l~~~~~--~~d---~VvaNlPY~Is  114 (294)
T PTZ00338         95 LKTEFP--YFD---VCVANVPYQIS  114 (294)
T ss_pred             hhhccc--ccC---EEEecCCcccC
Confidence            886643  465   57788887644

>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed

Probab=98.72  E-value=5.2e-08  Score=90.08  Aligned_cols=92  Identities=22%  Similarity=0.331  Sum_probs=72.0

Q ss_pred             ecCchHHHHHHHcCCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCC
Q 019802          225 LQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNL  304 (335)
Q Consensus       225 iQd~~s~l~~~~l~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~  304 (335)
                      ++..-...+...+++.++++|||+|||+|..|..+++..   .+|+|+|+++.+++.+++++..   ++++++++|+.++
T Consensus        26 ~~~~i~~~i~~~l~~~~~~~VLEiG~G~G~lt~~L~~~~---~~v~avE~d~~~~~~~~~~~~~---~~v~~i~~D~~~~   99 (272)
T PRK00274         26 IDENILDKIVDAAGPQPGDNVLEIGPGLGALTEPLLERA---AKVTAVEIDRDLAPILAETFAE---DNLTIIEGDALKV   99 (272)
T ss_pred             CCHHHHHHHHHhcCCCCcCeEEEeCCCccHHHHHHHHhC---CcEEEEECCHHHHHHHHHhhcc---CceEEEEChhhcC
Confidence            333334455667788899999999999999999999883   3899999999999999988753   5899999999998


Q ss_pred             CCCCCCCceEEEEEEeccccc
Q 019802          305 DPKDPAYSEVSLIFCIFTWMI  325 (335)
Q Consensus       305 ~~~~~~fd~V~~IllD~~cs~  325 (335)
                      +..+-.   .+.|+.++|..-
T Consensus       100 ~~~~~~---~~~vv~NlPY~i  117 (272)
T PRK00274        100 DLSELQ---PLKVVANLPYNI  117 (272)
T ss_pred             CHHHcC---cceEEEeCCccc
Confidence            754311   245777888653

>TIGR00477 tehB tellurite resistance protein TehB

Probab=98.71  E-value=7.8e-08  Score=84.49  Aligned_cols=81  Identities=16%  Similarity=0.105  Sum_probs=65.2

Q ss_pred             HHHHHHHcCCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCC
Q 019802          230 SSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDP  309 (335)
Q Consensus       230 s~l~~~~l~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~~~~~  309 (335)
                      +..+...+...++.+|||+|||+|..+..+++.   ..+|+++|+|+.+++.++++++..|+. +.+...|....+.. +
T Consensus        19 ~~~l~~~~~~~~~~~vLDiGcG~G~~a~~la~~---g~~V~~iD~s~~~l~~a~~~~~~~~~~-v~~~~~d~~~~~~~-~   93 (195)
T TIGR00477        19 HSAVREAVKTVAPCKTLDLGCGQGRNSLYLSLA---GYDVRAWDHNPASIASVLDMKARENLP-LRTDAYDINAAALN-E   93 (195)
T ss_pred             hHHHHHHhccCCCCcEEEeCCCCCHHHHHHHHC---CCeEEEEECCHHHHHHHHHHHHHhCCC-ceeEeccchhcccc-C
Confidence            334445666667789999999999999999975   369999999999999999999888884 78888888765543 4


Q ss_pred             CCceEE
Q 019802          310 AYSEVS  315 (335)
Q Consensus       310 ~fd~V~  315 (335)
                      +||.|.
T Consensus        94 ~fD~I~   99 (195)
T TIGR00477        94 DYDFIF   99 (195)
T ss_pred             CCCEEE
Confidence            688653

Part of a tellurite-reducing operon tehA and tehB

>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase

Probab=98.70  E-value=4.5e-08  Score=93.75  Aligned_cols=82  Identities=18%  Similarity=0.219  Sum_probs=65.8

Q ss_pred             CCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCC---------C---
Q 019802          242 GWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKD---------P---  309 (335)
Q Consensus       242 g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~~~~---------~---  309 (335)
                      +++|||+|||+|..+..++...   .+|+++|+++.+++.+++|++..|+.|++++++|+.++....         .   
T Consensus       198 ~~~vlDl~~G~G~~sl~la~~~---~~v~~vE~~~~av~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~  274 (353)
T TIGR02143       198 KGDLLELYCGNGNFSLALAQNF---RRVLATEIAKPSVNAAQYNIAANNIDNVQIIRMSAEEFTQAMNGVREFRRLKGID  274 (353)
T ss_pred             CCcEEEEeccccHHHHHHHHhC---CEEEEEECCHHHHHHHHHHHHHcCCCcEEEEEcCHHHHHHHHhhccccccccccc
Confidence            3479999999999999998774   489999999999999999999999999999999997743210         0   


Q ss_pred             --CCceEEEEEEeccccccccc
Q 019802          310 --AYSEVSLIFCIFTWMIIMFH  329 (335)
Q Consensus       310 --~fd~V~~IllD~~cs~~g~~  329 (335)
                        .+ ..+.|++|||=  .|.+
T Consensus       275 ~~~~-~~d~v~lDPPR--~G~~  293 (353)
T TIGR02143       275 LKSY-NCSTIFVDPPR--AGLD  293 (353)
T ss_pred             cccC-CCCEEEECCCC--CCCc
Confidence              11 13569999994  4543

This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.

>PRK08317 hypothetical protein; Provisional

Probab=98.70  E-value=1.8e-07  Score=83.69  Aligned_cols=81  Identities=27%  Similarity=0.359  Sum_probs=67.8

Q ss_pred             HHHcCCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCce
Q 019802          234 AAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSE  313 (335)
Q Consensus       234 ~~~l~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~~~~~~fd~  313 (335)
                      ...+.+.++.+|||+|||+|..+..++..+++.++++++|+++.+++.++++... ...++.+...|+..++.....||.
T Consensus        12 ~~~~~~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~d~~~~~~~~~~~D~   90 (241)
T PRK08317         12 FELLAVQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAG-LGPNVEFVRGDADGLPFPDGSFDA   90 (241)
T ss_pred             HHHcCCCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhC-CCCceEEEecccccCCCCCCCceE
Confidence            4567788899999999999999999999886678999999999999999988433 335799999999887776677886


Q ss_pred             EE
Q 019802          314 VS  315 (335)
Q Consensus       314 V~  315 (335)
                      |.
T Consensus        91 v~   92 (241)
T PRK08317         91 VR   92 (241)
T ss_pred             EE
Confidence            54

>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional

Probab=98.70  E-value=7e-08  Score=87.94  Aligned_cols=74  Identities=23%  Similarity=0.330  Sum_probs=63.0

Q ss_pred             CCCCCEEEEEcCCCchHHHHHHHHc-CCCeEEEEEeCCHHHHHHHHHHHHHhCCC-cEEEEeccCCCCCCCCCCCceE
Q 019802          239 PKPGWKVLDACSAPGNKTVHLAALM-KGKGKIVACELNKERVRRLKDTIKLSGAA-NIEVLHGDFLNLDPKDPAYSEV  314 (335)
Q Consensus       239 ~~~g~~VLD~cagpG~kt~~la~~~-~~~g~i~a~D~~~~rl~~~~~~~~~~g~~-ni~~~~~D~~~~~~~~~~fd~V  314 (335)
                      +.++.+|||+|||+|..+..+++.+ .+.++|+++|+|+.|++.+++++++.+.. +++++++|+.+++..  .+|.|
T Consensus        54 ~~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~~~--~~D~v  129 (247)
T PRK15451         54 VQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAIE--NASMV  129 (247)
T ss_pred             CCCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCCCC--CCCEE
Confidence            3578899999999999999998864 45689999999999999999999998875 699999999887754  36653

>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family

Probab=98.69  E-value=7e-08  Score=84.86  Aligned_cols=84  Identities=27%  Similarity=0.397  Sum_probs=61.2

Q ss_pred             CCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCc-EEEEeccCCCCCCCCCCCceEEEE
Q 019802          239 PKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAAN-IEVLHGDFLNLDPKDPAYSEVSLI  317 (335)
Q Consensus       239 ~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~n-i~~~~~D~~~~~~~~~~fd~V~~I  317 (335)
                      .++|+.|+|++||-|..++.+|.. .....|+|+|+++..++.+++|++..++++ |.++++|+.++.. ...||.   |
T Consensus        99 v~~~e~VlD~faGIG~f~l~~ak~-~~~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~~~~~~-~~~~dr---v  173 (200)
T PF02475_consen   99 VKPGEVVLDMFAGIGPFSLPIAKH-GKAKRVYAVDLNPDAVEYLKENIRLNKVENRIEVINGDAREFLP-EGKFDR---V  173 (200)
T ss_dssp             --TT-EEEETT-TTTTTHHHHHHH-T-SSEEEEEES-HHHHHHHHHHHHHTT-TTTEEEEES-GGG----TT-EEE---E
T ss_pred             CCcceEEEEccCCccHHHHHHhhh-cCccEEEEecCCHHHHHHHHHHHHHcCCCCeEEEEcCCHHHhcC-ccccCE---E
Confidence            578999999999999999999985 345789999999999999999999999976 8899999999876 555664   8


Q ss_pred             EEeccccccc
Q 019802          318 FCIFTWMIIM  327 (335)
Q Consensus       318 llD~~cs~~g  327 (335)
                      +++.|-+..-
T Consensus       174 im~lp~~~~~  183 (200)
T PF02475_consen  174 IMNLPESSLE  183 (200)
T ss_dssp             EE--TSSGGG
T ss_pred             EECChHHHHH
Confidence            8888766543

Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.

>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional

Probab=98.69  E-value=1e-07  Score=87.50  Aligned_cols=93  Identities=23%  Similarity=0.314  Sum_probs=74.9

Q ss_pred             EEecCchHHHHHHHcCCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCC
Q 019802          223 VFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFL  302 (335)
Q Consensus       223 ~~iQd~~s~l~~~~l~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~  302 (335)
                      |.+.......++..++..+++.|||+|||+|..|..+++.   ..+|+++|+++.+++.+++++..  ..+++++++|+.
T Consensus        11 fl~d~~~~~~iv~~~~~~~~~~VLEIG~G~G~lt~~L~~~---~~~v~~vEid~~~~~~l~~~~~~--~~~v~ii~~D~~   85 (258)
T PRK14896         11 FLIDDRVVDRIVEYAEDTDGDPVLEIGPGKGALTDELAKR---AKKVYAIELDPRLAEFLRDDEIA--AGNVEIIEGDAL   85 (258)
T ss_pred             ccCCHHHHHHHHHhcCCCCcCeEEEEeCccCHHHHHHHHh---CCEEEEEECCHHHHHHHHHHhcc--CCCEEEEEeccc
Confidence            4444445566677778889999999999999999999987   35899999999999999998865  468999999999


Q ss_pred             CCCCCCCCCceEEEEEEeccccc
Q 019802          303 NLDPKDPAYSEVSLIFCIFTWMI  325 (335)
Q Consensus       303 ~~~~~~~~fd~V~~IllD~~cs~  325 (335)
                      +++..  .||   .|+.++|...
T Consensus        86 ~~~~~--~~d---~Vv~NlPy~i  103 (258)
T PRK14896         86 KVDLP--EFN---KVVSNLPYQI  103 (258)
T ss_pred             cCCch--hce---EEEEcCCccc
Confidence            87643  354   5777877653

>COG4122 Predicted O-methyltransferase [General function prediction only]

Probab=98.69  E-value=7e-08  Score=85.64  Aligned_cols=93  Identities=18%  Similarity=0.326  Sum_probs=78.8

Q ss_pred             CchHHHHHHHcCCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCc-EEEEe-ccCCCC
Q 019802          227 GKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAAN-IEVLH-GDFLNL  304 (335)
Q Consensus       227 d~~s~l~~~~l~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~n-i~~~~-~D~~~~  304 (335)
                      ....+++..++......+||++|++.|.-|++||.-++.+|+|+++|+++++.+.+++|+++.|+.+ |+++. +|+.+.
T Consensus        45 ~e~g~~L~~L~~~~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~  124 (219)
T COG4122          45 PETGALLRLLARLSGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDALDV  124 (219)
T ss_pred             hhHHHHHHHHHHhcCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHHHH
Confidence            4556677777778889999999999999999999999878999999999999999999999999977 77888 588765


Q ss_pred             CCC--CCCCceEEEEEEecc
Q 019802          305 DPK--DPAYSEVSLIFCIFT  322 (335)
Q Consensus       305 ~~~--~~~fd~V~~IllD~~  322 (335)
                      -..  .++||.   ||+|.-
T Consensus       125 l~~~~~~~fDl---iFIDad  141 (219)
T COG4122         125 LSRLLDGSFDL---VFIDAD  141 (219)
T ss_pred             HHhccCCCccE---EEEeCC
Confidence            432  466775   899853

>PRK14968 putative methyltransferase; Provisional

Probab=98.69  E-value=1.7e-07  Score=81.11  Aligned_cols=89  Identities=22%  Similarity=0.274  Sum_probs=71.9

Q ss_pred             HHHHHHHcCCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCc--EEEEeccCCCCCCC
Q 019802          230 SSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAAN--IEVLHGDFLNLDPK  307 (335)
Q Consensus       230 s~l~~~~l~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~n--i~~~~~D~~~~~~~  307 (335)
                      +.++...+...++.+|||+|||.|..+..++..   ..+|+++|+++.+++.+++++...++.+  +.++++|..+... 
T Consensus        12 ~~~l~~~~~~~~~~~vLd~G~G~G~~~~~l~~~---~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~-   87 (188)
T PRK14968         12 SFLLAENAVDKKGDRVLEVGTGSGIVAIVAAKN---GKKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFEPFR-   87 (188)
T ss_pred             HHHHHHhhhccCCCEEEEEccccCHHHHHHHhh---cceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEecccccccc-
Confidence            455555666678999999999999999999987   4799999999999999999999988866  8899999866432 


Q ss_pred             CCCCceEEEEEEeccccc
Q 019802          308 DPAYSEVSLIFCIFTWMI  325 (335)
Q Consensus       308 ~~~fd~V~~IllD~~cs~  325 (335)
                      ...||   .|++++|...
T Consensus        88 ~~~~d---~vi~n~p~~~  102 (188)
T PRK14968         88 GDKFD---VILFNPPYLP  102 (188)
T ss_pred             ccCce---EEEECCCcCC
Confidence            23455   5788888654

>TIGR00438 rrmJ cell division protein FtsJ

Probab=98.68  E-value=7.4e-08  Score=84.00  Aligned_cols=78  Identities=26%  Similarity=0.348  Sum_probs=59.0

Q ss_pred             HcCCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCC--------CC
Q 019802          236 ALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLD--------PK  307 (335)
Q Consensus       236 ~l~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~--------~~  307 (335)
                      ...+++|++|||+|||||+.+.+++..+.+.++|+++|+++.+           +..++.++++|+.+.+        ..
T Consensus        27 ~~~i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~-----------~~~~i~~~~~d~~~~~~~~~l~~~~~   95 (188)
T TIGR00438        27 FKLIKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK-----------PIENVDFIRGDFTDEEVLNKIRERVG   95 (188)
T ss_pred             hcccCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc-----------cCCCceEEEeeCCChhHHHHHHHHhC
Confidence            4456789999999999999999999987667899999999865           2356888999987643        12


Q ss_pred             CCCCceEEEEEEeccccccc
Q 019802          308 DPAYSEVSLIFCIFTWMIIM  327 (335)
Q Consensus       308 ~~~fd~V~~IllD~~cs~~g  327 (335)
                      .++||   .|++|+++...|
T Consensus        96 ~~~~D---~V~~~~~~~~~g  112 (188)
T TIGR00438        96 DDKVD---VVMSDAAPNISG  112 (188)
T ss_pred             CCCcc---EEEcCCCCCCCC
Confidence            33455   588886543333

>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]

Probab=98.68  E-value=6.5e-08  Score=90.65  Aligned_cols=107  Identities=19%  Similarity=0.232  Sum_probs=85.8

Q ss_pred             CCCCcccccceEEecCchHHHHHHHcCCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCC
Q 019802          212 LHVHPLIVNGCVFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGA  291 (335)
Q Consensus       212 ~~~~~~~~~g~~~iQd~~s~l~~~~l~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~  291 (335)
                      ...-|.|..|.  +--.-|...+.+..+++|+.|||=.||+||......- |  +.+++++|++.+|++.++.|++.+|+
T Consensus       170 ~~kRPf~~p~s--~~P~lAR~mVNLa~v~~G~~vlDPFcGTGgiLiEagl-~--G~~viG~Did~~mv~gak~Nl~~y~i  244 (347)
T COG1041         170 PEKRPFFRPGS--MDPRLARAMVNLARVKRGELVLDPFCGTGGILIEAGL-M--GARVIGSDIDERMVRGAKINLEYYGI  244 (347)
T ss_pred             cccCCccCcCC--cCHHHHHHHHHHhccccCCEeecCcCCccHHHHhhhh-c--CceEeecchHHHHHhhhhhhhhhhCc
Confidence            34445555542  3334577778888899999999999999999887764 4  37999999999999999999999999


Q ss_pred             CcEEEEec-cCCCCCCCCCCCceEEEEEEecccccc
Q 019802          292 ANIEVLHG-DFLNLDPKDPAYSEVSLIFCIFTWMII  326 (335)
Q Consensus       292 ~ni~~~~~-D~~~~~~~~~~fd~V~~IllD~~cs~~  326 (335)
                      ....+... |+++++..+++|   ++|.+|||.-.+
T Consensus       245 ~~~~~~~~~Da~~lpl~~~~v---daIatDPPYGrs  277 (347)
T COG1041         245 EDYPVLKVLDATNLPLRDNSV---DAIATDPPYGRS  277 (347)
T ss_pred             CceeEEEecccccCCCCCCcc---ceEEecCCCCcc
Confidence            88777666 999999766644   569999997644

>PRK10258 biotin biosynthesis protein BioC; Provisional

Probab=98.68  E-value=4.7e-08  Score=89.11  Aligned_cols=83  Identities=19%  Similarity=0.185  Sum_probs=68.2

Q ss_pred             EecCchHHHHHHHcCCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCC
Q 019802          224 FLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLN  303 (335)
Q Consensus       224 ~iQd~~s~l~~~~l~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~  303 (335)
                      .+|...+..+...+...++.+|||+|||+|..+..++..   ..+|+++|+|+.+++.++++..     .+.++++|+..
T Consensus        25 ~~q~~~a~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~---~~~v~~~D~s~~~l~~a~~~~~-----~~~~~~~d~~~   96 (251)
T PRK10258         25 ELQRQSADALLAMLPQRKFTHVLDAGCGPGWMSRYWRER---GSQVTALDLSPPMLAQARQKDA-----ADHYLAGDIES   96 (251)
T ss_pred             HHHHHHHHHHHHhcCccCCCeEEEeeCCCCHHHHHHHHc---CCeEEEEECCHHHHHHHHhhCC-----CCCEEEcCccc
Confidence            367777777777777667889999999999999988764   3689999999999999988743     34678999999


Q ss_pred             CCCCCCCCceE
Q 019802          304 LDPKDPAYSEV  314 (335)
Q Consensus       304 ~~~~~~~fd~V  314 (335)
                      ++..+++||.|
T Consensus        97 ~~~~~~~fD~V  107 (251)
T PRK10258         97 LPLATATFDLA  107 (251)
T ss_pred             CcCCCCcEEEE
Confidence            88777778864

>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional

Probab=98.68  E-value=1.2e-07  Score=87.24  Aligned_cols=95  Identities=16%  Similarity=0.128  Sum_probs=72.9

Q ss_pred             cccceEEecCc-hHHHHHHHcCCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEE
Q 019802          218 IVNGCVFLQGK-ASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEV  296 (335)
Q Consensus       218 ~~~g~~~iQd~-~s~l~~~~l~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~  296 (335)
                      |-.|++..... ....+...+.+.++.+|||+|||+|+.+..++...  .++|+++|+++.+++.+++++..  ..++.+
T Consensus        28 ~g~~~~~~gg~~~~~~~l~~l~l~~~~~VLDiGcG~G~~a~~la~~~--~~~v~giD~s~~~~~~a~~~~~~--~~~i~~  103 (263)
T PTZ00098         28 FGEDYISSGGIEATTKILSDIELNENSKVLDIGSGLGGGCKYINEKY--GAHVHGVDICEKMVNIAKLRNSD--KNKIEF  103 (263)
T ss_pred             hCCCCCCCCchHHHHHHHHhCCCCCCCEEEEEcCCCChhhHHHHhhc--CCEEEEEECCHHHHHHHHHHcCc--CCceEE
Confidence            33444444322 23444556788899999999999999999998763  46999999999999999998764  346999


Q ss_pred             EeccCCCCCCCCCCCceEEE
Q 019802          297 LHGDFLNLDPKDPAYSEVSL  316 (335)
Q Consensus       297 ~~~D~~~~~~~~~~fd~V~~  316 (335)
                      .++|+...+..+.+||.|.+
T Consensus       104 ~~~D~~~~~~~~~~FD~V~s  123 (263)
T PTZ00098        104 EANDILKKDFPENTFDMIYS  123 (263)
T ss_pred             EECCcccCCCCCCCeEEEEE
Confidence            99999988777778987543

>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional

Probab=98.67  E-value=1.8e-07  Score=89.19  Aligned_cols=89  Identities=18%  Similarity=0.207  Sum_probs=72.4

Q ss_pred             CchHHHHHHHcCCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCC
Q 019802          227 GKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDP  306 (335)
Q Consensus       227 d~~s~l~~~~l~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~~  306 (335)
                      |..+.+....+.....++|||+|||+|..+..++.+. +..+|+++|+|+.+++.+++|+++.++. .+++..|+...  
T Consensus       182 D~gt~lLl~~l~~~~~g~VLDlGCG~G~ls~~la~~~-p~~~v~~vDis~~Al~~A~~nl~~n~l~-~~~~~~D~~~~--  257 (342)
T PRK09489        182 DVGSQLLLSTLTPHTKGKVLDVGCGAGVLSAVLARHS-PKIRLTLSDVSAAALESSRATLAANGLE-GEVFASNVFSD--  257 (342)
T ss_pred             CHHHHHHHHhccccCCCeEEEeccCcCHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcCCC-CEEEEcccccc--
Confidence            6677777777766666799999999999999999874 4578999999999999999999998875 56778887553  


Q ss_pred             CCCCCceEEEEEEecc
Q 019802          307 KDPAYSEVSLIFCIFT  322 (335)
Q Consensus       307 ~~~~fd~V~~IllD~~  322 (335)
                      ..+.||.   |+++||
T Consensus       258 ~~~~fDl---IvsNPP  270 (342)
T PRK09489        258 IKGRFDM---IISNPP  270 (342)
T ss_pred             cCCCccE---EEECCC
Confidence            2345764   888887

>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated

Probab=98.66  E-value=7.5e-08  Score=92.58  Aligned_cols=80  Identities=20%  Similarity=0.238  Sum_probs=65.6

Q ss_pred             CCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCC--------------
Q 019802          242 GWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPK--------------  307 (335)
Q Consensus       242 g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~~~--------------  307 (335)
                      +.+|||+|||+|..+..++...   .+|+++|+++.+++.+++|++..|++|++++++|+.+.-..              
T Consensus       207 ~~~vLDl~~G~G~~sl~la~~~---~~v~~vE~~~~ai~~a~~N~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~~~~~  283 (362)
T PRK05031        207 KGDLLELYCGNGNFTLALARNF---RRVLATEISKPSVAAAQYNIAANGIDNVQIIRMSAEEFTQAMNGVREFNRLKGID  283 (362)
T ss_pred             CCeEEEEeccccHHHHHHHhhC---CEEEEEECCHHHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhhccccccccccc
Confidence            3579999999999999888763   48999999999999999999999999999999999774211              


Q ss_pred             --CCCCceEEEEEEeccccccccc
Q 019802          308 --DPAYSEVSLIFCIFTWMIIMFH  329 (335)
Q Consensus       308 --~~~fd~V~~IllD~~cs~~g~~  329 (335)
                        ...||   .|++|||-+  |++
T Consensus       284 ~~~~~~D---~v~lDPPR~--G~~  302 (362)
T PRK05031        284 LKSYNFS---TIFVDPPRA--GLD  302 (362)
T ss_pred             ccCCCCC---EEEECCCCC--CCc
Confidence              11244   699999964  544

>TIGR00095 RNA methyltransferase, RsmD family

Probab=98.65  E-value=7.3e-08  Score=84.29  Aligned_cols=81  Identities=19%  Similarity=0.225  Sum_probs=65.7

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCC-cEEEEeccCCCCCC---CCCCCceEEE
Q 019802          241 PGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAA-NIEVLHGDFLNLDP---KDPAYSEVSL  316 (335)
Q Consensus       241 ~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~-ni~~~~~D~~~~~~---~~~~fd~V~~  316 (335)
                      .|.+|||+|||+|..++.++.+  +...|+++|.++..++.+++|++..++. +++++++|+.+.-.   ....+  .+.
T Consensus        49 ~g~~vLDLfaGsG~lglea~sr--ga~~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~l~~~~~~~~~--~dv  124 (189)
T TIGR00095        49 QGAHLLDVFAGSGLLGEEALSR--GAKVAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALRALKFLAKKPTF--DNV  124 (189)
T ss_pred             CCCEEEEecCCCcHHHHHHHhC--CCCEEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHHHHHHhhccCCC--ceE
Confidence            5889999999999999999887  2358999999999999999999999986 68999999955321   11222  246


Q ss_pred             EEEeccccc
Q 019802          317 IFCIFTWMI  325 (335)
Q Consensus       317 IllD~~cs~  325 (335)
                      |++|||-..
T Consensus       125 v~~DPPy~~  133 (189)
T TIGR00095       125 IYLDPPFFN  133 (189)
T ss_pred             EEECcCCCC
Confidence            999999854

This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.

>PLN02396 hexaprenyldihydroxybenzoate methyltransferase

Probab=98.64  E-value=9.9e-08  Score=90.06  Aligned_cols=76  Identities=17%  Similarity=0.199  Sum_probs=63.9

Q ss_pred             CCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCC-CcEEEEeccCCCCCCCCCCCceEEE
Q 019802          238 APKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGA-ANIEVLHGDFLNLDPKDPAYSEVSL  316 (335)
Q Consensus       238 ~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~-~ni~~~~~D~~~~~~~~~~fd~V~~  316 (335)
                      .+.+|.+|||+|||+|..+..++..   .++|+++|+++++++.+++++...+. .+|+++++|+.+++..+.+||.|.+
T Consensus       128 ~~~~g~~ILDIGCG~G~~s~~La~~---g~~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~~~~~~FD~Vi~  204 (322)
T PLN02396        128 KPFEGLKFIDIGCGGGLLSEPLARM---GATVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLADEGRKFDAVLS  204 (322)
T ss_pred             cCCCCCEEEEeeCCCCHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhhhccCCCCEEEE
Confidence            3567889999999999999988864   46899999999999999988766544 4799999999998877778998654

>PRK14103 trans-aconitate 2-methyltransferase; Provisional

Probab=98.64  E-value=1.4e-07  Score=86.30  Aligned_cols=75  Identities=23%  Similarity=0.261  Sum_probs=60.9

Q ss_pred             HHHHcCCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCc
Q 019802          233 VAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYS  312 (335)
Q Consensus       233 ~~~~l~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~~~~~~fd  312 (335)
                      +...+.+.++.+|||+|||+|..+..++... +.++|+++|+|+.+++.++++       ++.++++|+.++. .+++||
T Consensus        21 ll~~l~~~~~~~vLDlGcG~G~~~~~l~~~~-p~~~v~gvD~s~~~~~~a~~~-------~~~~~~~d~~~~~-~~~~fD   91 (255)
T PRK14103         21 LLARVGAERARRVVDLGCGPGNLTRYLARRW-PGAVIEALDSSPEMVAAARER-------GVDARTGDVRDWK-PKPDTD   91 (255)
T ss_pred             HHHhCCCCCCCEEEEEcCCCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHhc-------CCcEEEcChhhCC-CCCCce
Confidence            3445677889999999999999999999886 457999999999999998763       4788999998875 345788


Q ss_pred             eEEE
Q 019802          313 EVSL  316 (335)
Q Consensus       313 ~V~~  316 (335)
                      .|.+
T Consensus        92 ~v~~   95 (255)
T PRK14103         92 VVVS   95 (255)
T ss_pred             EEEE
Confidence            6433

>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH

Probab=98.63  E-value=4.4e-08  Score=85.17  Aligned_cols=81  Identities=22%  Similarity=0.354  Sum_probs=60.4

Q ss_pred             CCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCc-EEEEeccCCCCCC----CCCCCceE
Q 019802          240 KPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAAN-IEVLHGDFLNLDP----KDPAYSEV  314 (335)
Q Consensus       240 ~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~n-i~~~~~D~~~~~~----~~~~fd~V  314 (335)
                      -+|.+|||+|||+|..++..+.+  +..+|+.+|.+...++.+++|++.+++.+ +.+++.|+...-.    ....||  
T Consensus        41 ~~g~~vLDLFaGSGalGlEALSR--GA~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~~~~l~~~~~~~~~fD--  116 (183)
T PF03602_consen   41 LEGARVLDLFAGSGALGLEALSR--GAKSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDAFKFLLKLAKKGEKFD--  116 (183)
T ss_dssp             HTT-EEEETT-TTSHHHHHHHHT--T-SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSHHHHHHHHHHCTS-EE--
T ss_pred             cCCCeEEEcCCccCccHHHHHhc--CCCeEEEEECCHHHHHHHHHHHHHhCCCcceeeeccCHHHHHHhhcccCCCce--
Confidence            37999999999999999988776  45799999999999999999999999976 8999999754321    234455  


Q ss_pred             EEEEEeccccc
Q 019802          315 SLIFCIFTWMI  325 (335)
Q Consensus       315 ~~IllD~~cs~  325 (335)
                       .|++|||.--
T Consensus       117 -iIflDPPY~~  126 (183)
T PF03602_consen  117 -IIFLDPPYAK  126 (183)
T ss_dssp             -EEEE--STTS
T ss_pred             -EEEECCCccc
Confidence             5999999753

They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.

>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=98.62  E-value=9.1e-08  Score=72.80  Aligned_cols=64  Identities=22%  Similarity=0.361  Sum_probs=53.4

Q ss_pred             EEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCceE
Q 019802          246 LDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEV  314 (335)
Q Consensus       246 LD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~~~~~~fd~V  314 (335)
                      ||+|||+|..+..+++.  +..+|+++|+++.+++.++++....+   +.+.++|+.++++.+++||.|
T Consensus         1 LdiG~G~G~~~~~l~~~--~~~~v~~~D~~~~~~~~~~~~~~~~~---~~~~~~d~~~l~~~~~sfD~v   64 (95)
T PF08241_consen    1 LDIGCGTGRFAAALAKR--GGASVTGIDISEEMLEQARKRLKNEG---VSFRQGDAEDLPFPDNSFDVV   64 (95)
T ss_dssp             EEET-TTSHHHHHHHHT--TTCEEEEEES-HHHHHHHHHHTTTST---EEEEESBTTSSSS-TT-EEEE
T ss_pred             CEecCcCCHHHHHHHhc--cCCEEEEEeCCHHHHHHHHhcccccC---chheeehHHhCcccccccccc
Confidence            89999999999999988  56899999999999999999887554   559999999999999999874

The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....

>PRK01683 trans-aconitate 2-methyltransferase; Provisional

Probab=98.62  E-value=2.5e-07  Score=84.66  Aligned_cols=83  Identities=14%  Similarity=0.211  Sum_probs=65.5

Q ss_pred             ecCchHHHHHHHcCCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCC
Q 019802          225 LQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNL  304 (335)
Q Consensus       225 iQd~~s~l~~~~l~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~  304 (335)
                      .|...+..+...+.+.++.+|||+|||+|..+..+++.. +.++|+++|+|+.+++.++++.     .++.++.+|+..+
T Consensus        15 ~~~~~~~~ll~~~~~~~~~~vLDiGcG~G~~~~~la~~~-~~~~v~gvD~s~~~i~~a~~~~-----~~~~~~~~d~~~~   88 (258)
T PRK01683         15 ERTRPARDLLARVPLENPRYVVDLGCGPGNSTELLVERW-PAARITGIDSSPAMLAEARSRL-----PDCQFVEADIASW   88 (258)
T ss_pred             HhhcHHHHHHhhCCCcCCCEEEEEcccCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHhC-----CCCeEEECchhcc
Confidence            344444445556677889999999999999999999885 4579999999999999998874     4688999999877


Q ss_pred             CCCCCCCceE
Q 019802          305 DPKDPAYSEV  314 (335)
Q Consensus       305 ~~~~~~fd~V  314 (335)
                      .+ ..+||.|
T Consensus        89 ~~-~~~fD~v   97 (258)
T PRK01683         89 QP-PQALDLI   97 (258)
T ss_pred             CC-CCCccEE
Confidence            54 3468764

>PRK05785 hypothetical protein; Provisional

Probab=98.62  E-value=1e-07  Score=85.75  Aligned_cols=66  Identities=21%  Similarity=0.249  Sum_probs=56.2

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCceEEE
Q 019802          241 PGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVSL  316 (335)
Q Consensus       241 ~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~~~~~~fd~V~~  316 (335)
                      ++.+|||+|||+|..+.++++..  .++|+++|+|++|++.+++.        ...+++|++++++.+++||.|.+
T Consensus        51 ~~~~VLDlGcGtG~~~~~l~~~~--~~~v~gvD~S~~Ml~~a~~~--------~~~~~~d~~~lp~~d~sfD~v~~  116 (226)
T PRK05785         51 RPKKVLDVAAGKGELSYHFKKVF--KYYVVALDYAENMLKMNLVA--------DDKVVGSFEALPFRDKSFDVVMS  116 (226)
T ss_pred             CCCeEEEEcCCCCHHHHHHHHhc--CCEEEEECCCHHHHHHHHhc--------cceEEechhhCCCCCCCEEEEEe
Confidence            47899999999999999998875  36999999999999998764        13578999999988899997544

>PRK06202 hypothetical protein; Provisional

Probab=98.61  E-value=1.6e-07  Score=84.55  Aligned_cols=81  Identities=14%  Similarity=0.125  Sum_probs=60.8

Q ss_pred             HHHcCCCCCCEEEEEcCCCchHHHHHHHHcC---CCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCC
Q 019802          234 AAALAPKPGWKVLDACSAPGNKTVHLAALMK---GKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPA  310 (335)
Q Consensus       234 ~~~l~~~~g~~VLD~cagpG~kt~~la~~~~---~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~~~~~~  310 (335)
                      ...+...++.+|||+|||+|..+..|++...   ...+|+++|+|+.+++.++++....   ++.+.+.|+..++..+.+
T Consensus        53 ~~~l~~~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~---~~~~~~~~~~~l~~~~~~  129 (232)
T PRK06202         53 RPALSADRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRP---GVTFRQAVSDELVAEGER  129 (232)
T ss_pred             HHhcCCCCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccC---CCeEEEEecccccccCCC
Confidence            3344456778999999999999999887543   3459999999999999998876544   355666676666655677


Q ss_pred             CceEEEE
Q 019802          311 YSEVSLI  317 (335)
Q Consensus       311 fd~V~~I  317 (335)
                      ||.|.+.
T Consensus       130 fD~V~~~  136 (232)
T PRK06202        130 FDVVTSN  136 (232)
T ss_pred             ccEEEEC
Confidence            8876544

>TIGR00740 methyltransferase, putative

Probab=98.60  E-value=2.9e-07  Score=83.29  Aligned_cols=73  Identities=22%  Similarity=0.260  Sum_probs=62.1

Q ss_pred             CCCCEEEEEcCCCchHHHHHHHHcC-CCeEEEEEeCCHHHHHHHHHHHHHhCC-CcEEEEeccCCCCCCCCCCCceE
Q 019802          240 KPGWKVLDACSAPGNKTVHLAALMK-GKGKIVACELNKERVRRLKDTIKLSGA-ANIEVLHGDFLNLDPKDPAYSEV  314 (335)
Q Consensus       240 ~~g~~VLD~cagpG~kt~~la~~~~-~~g~i~a~D~~~~rl~~~~~~~~~~g~-~ni~~~~~D~~~~~~~~~~fd~V  314 (335)
                      .++.+|||+|||+|..+..+++.+. ++++++++|+|+.+++.++++++..+. .+++++++|+.+++..  .+|.|
T Consensus        52 ~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~~~--~~d~v  126 (239)
T TIGR00740        52 TPDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEIK--NASMV  126 (239)
T ss_pred             CCCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCCC--CCCEE
Confidence            5788999999999999999998753 568999999999999999999988764 4689999999988754  36643

A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.

>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=98.60  E-value=1.5e-07  Score=86.04  Aligned_cols=72  Identities=22%  Similarity=0.427  Sum_probs=61.8

Q ss_pred             CCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCC-CcEEEEeccCCCCC-CCCCCCceE
Q 019802          240 KPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGA-ANIEVLHGDFLNLD-PKDPAYSEV  314 (335)
Q Consensus       240 ~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~-~ni~~~~~D~~~~~-~~~~~fd~V  314 (335)
                      .++.+|||+|||+|..+..+++.   ..+|+++|+|+.+++.++++++..|+ .+++++++|+.++. ..+.+||.|
T Consensus        43 ~~~~~vLDiGcG~G~~a~~la~~---g~~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~~~~~~fD~V  116 (255)
T PRK11036         43 PRPLRVLDAGGGEGQTAIKLAEL---GHQVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQHLETPVDLI  116 (255)
T ss_pred             CCCCEEEEeCCCchHHHHHHHHc---CCEEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhhhcCCCCCEE
Confidence            45789999999999999999986   36899999999999999999999987 47999999998875 345678864

>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional

Probab=98.60  E-value=1.8e-07  Score=90.30  Aligned_cols=91  Identities=26%  Similarity=0.295  Sum_probs=71.9

Q ss_pred             HHHHHHHcCCC-CCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCC
Q 019802          230 SSMVAAALAPK-PGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKD  308 (335)
Q Consensus       230 s~l~~~~l~~~-~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~~~~  308 (335)
                      +.+++..+... ++.+|||++||.|..+..++...+ ..+|+++|+++..++.+++|++..|+.++++.++|+..+....
T Consensus        45 ~~~v~~~~~~~~~~~~vLDl~aGsG~~~l~~a~~~~-~~~V~a~Din~~Av~~a~~N~~~N~~~~~~v~~~Da~~~l~~~  123 (382)
T PRK04338         45 SVLVLRAFGPKLPRESVLDALSASGIRGIRYALETG-VEKVTLNDINPDAVELIKKNLELNGLENEKVFNKDANALLHEE  123 (382)
T ss_pred             HHHHHHHHHhhcCCCEEEECCCcccHHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHhCCCceEEEhhhHHHHHhhc
Confidence            34444444433 457999999999999999987754 3589999999999999999999999998999999997754323


Q ss_pred             CCCceEEEEEEecccc
Q 019802          309 PAYSEVSLIFCIFTWM  324 (335)
Q Consensus       309 ~~fd~V~~IllD~~cs  324 (335)
                      ..||   .|++|||-+
T Consensus       124 ~~fD---~V~lDP~Gs  136 (382)
T PRK04338        124 RKFD---VVDIDPFGS  136 (382)
T ss_pred             CCCC---EEEECCCCC
Confidence            3476   588999833

>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]

Probab=98.60  E-value=8.3e-08  Score=92.25  Aligned_cols=104  Identities=18%  Similarity=0.230  Sum_probs=87.2

Q ss_pred             cccccceEEecCchHHHHHHHcCCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCC--c
Q 019802          216 PLIVNGCVFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAA--N  293 (335)
Q Consensus       216 ~~~~~g~~~iQd~~s~l~~~~l~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~--n  293 (335)
                      .+.+.|.|.-|..+-..+...+.   |.+|||++|=+|+.|.|.|.  ++..+|+++|.|..-++.+++|++-.|+.  .
T Consensus       195 ~g~kTGfFlDqR~~R~~l~~~~~---GkrvLNlFsYTGgfSv~Aa~--gGA~~vt~VD~S~~al~~a~~N~~LNg~~~~~  269 (393)
T COG1092         195 DGLKTGFFLDQRDNRRALGELAA---GKRVLNLFSYTGGFSVHAAL--GGASEVTSVDLSKRALEWARENAELNGLDGDR  269 (393)
T ss_pred             CcccceeeHHhHHHHHHHhhhcc---CCeEEEecccCcHHHHHHHh--cCCCceEEEeccHHHHHHHHHHHHhcCCCccc
Confidence            46789999999999888776653   99999999999999999885  45569999999999999999999999984  4


Q ss_pred             EEEEeccCCCCCC----CCCCCceEEEEEEeccccccc
Q 019802          294 IEVLHGDFLNLDP----KDPAYSEVSLIFCIFTWMIIM  327 (335)
Q Consensus       294 i~~~~~D~~~~~~----~~~~fd~V~~IllD~~cs~~g  327 (335)
                      +.++++|+.++-.    ....||.   |++|||--+-+
T Consensus       270 ~~~i~~Dvf~~l~~~~~~g~~fDl---IilDPPsF~r~  304 (393)
T COG1092         270 HRFIVGDVFKWLRKAERRGEKFDL---IILDPPSFARS  304 (393)
T ss_pred             eeeehhhHHHHHHHHHhcCCcccE---EEECCcccccC
Confidence            8899999977543    3347875   99999976544

>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed

Probab=98.59  E-value=4.9e-07  Score=81.10  Aligned_cols=83  Identities=24%  Similarity=0.374  Sum_probs=69.0

Q ss_pred             HHHHHcCCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCC-CcEEEEeccCCCCCCCCCC
Q 019802          232 MVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGA-ANIEVLHGDFLNLDPKDPA  310 (335)
Q Consensus       232 l~~~~l~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~-~ni~~~~~D~~~~~~~~~~  310 (335)
                      .+...+.+.++.+|||+|||+|..+..++...+...+++++|+++.+++.+++++...+. .++.++.+|+.+++.....
T Consensus        42 ~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  121 (239)
T PRK00216         42 KTIKWLGVRPGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALPFPDNS  121 (239)
T ss_pred             HHHHHhCCCCCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccCCCCCCC
Confidence            344556677889999999999999999999875468999999999999999999887654 3589999999888766667


Q ss_pred             CceE
Q 019802          311 YSEV  314 (335)
Q Consensus       311 fd~V  314 (335)
                      ||.|
T Consensus       122 ~D~I  125 (239)
T PRK00216        122 FDAV  125 (239)
T ss_pred             ccEE
Confidence            8864

>COG0781 NusB Transcription termination factor [Transcription]

Probab=98.59  E-value=2.7e-07  Score=77.26  Aligned_cols=102  Identities=16%  Similarity=0.199  Sum_probs=73.8

Q ss_pred             HHHHHHHHHHHHHHccchhh--hhhhhhhhh-cc-CCCc--cCHHHHHHHHHHHHhchHHHHHHHhhcccccc-cccc--
Q 019802           33 FARREAAKVLRLVLRGDARR--RAVGSIKSL-VY-SPSV--KNKKATYALVCQTLKHLSIIKQVLDSASILNS-KWKR--  103 (335)
Q Consensus        33 ~aR~~A~~iL~~v~~~~~~~--~~l~~~~~~-~~-~~~~--~dr~l~~~LV~gvlR~~~~LD~il~~~~ll~~-~~~~--  103 (335)
                      .+|..|+++|++++-++...  +....+... .. +.+.  .+..++..||.||++++..||.+|.+.  ++. ...+  
T Consensus        12 ~aR~~avq~Ly~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~lv~gv~~~~~~iD~~I~~~--L~~w~~~rL~   89 (151)
T COG0781          12 QARELAVQALYQWELSGSVSAEDILEDIEEEFVENELDIELADSEYFRSLVKGVLENQEELDELISPH--LKKWSLERLD   89 (151)
T ss_pred             HHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHhhcccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHH--HccCCHHHhh
Confidence            38999999999998855421  222211111 11 1111  678899999999999999999999984  453 2222  


Q ss_pred             --hHHHHHHHHHHHHhcCCCCchhHHHHHHHHhhh
Q 019802          104 --QEELVYILTYDILFGQEISLVGDAEKFLMLHKG  136 (335)
Q Consensus       104 --~~~lLrl~lyqllf~~~iP~~a~v~~~v~~~k~  136 (335)
                        .+++||+|+|||+|.+.+|....++|.|+..|.
T Consensus        90 ~verAILRla~yEl~~~~dvP~~VvInEaielaK~  124 (151)
T COG0781          90 LVERAILRLALYELLFRDDVPYKVVINEAIELAKK  124 (151)
T ss_pred             HHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHH
Confidence              379999999999999989988888888877653

>PRK12335 tellurite resistance protein TehB; Provisional

Probab=98.57  E-value=3.6e-07  Score=85.12  Aligned_cols=77  Identities=19%  Similarity=0.195  Sum_probs=63.6

Q ss_pred             HcCCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCceEE
Q 019802          236 ALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVS  315 (335)
Q Consensus       236 ~l~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~~~~~~fd~V~  315 (335)
                      .+...++.+|||+|||+|..+..++..   ..+|+|+|+|+.+++.++++++..++ ++++...|+..... +++||.|.
T Consensus       115 ~~~~~~~~~vLDlGcG~G~~~~~la~~---g~~V~avD~s~~ai~~~~~~~~~~~l-~v~~~~~D~~~~~~-~~~fD~I~  189 (287)
T PRK12335        115 AVQTVKPGKALDLGCGQGRNSLYLALL---GFDVTAVDINQQSLENLQEIAEKENL-NIRTGLYDINSASI-QEEYDFIL  189 (287)
T ss_pred             HhhccCCCCEEEeCCCCCHHHHHHHHC---CCEEEEEECCHHHHHHHHHHHHHcCC-ceEEEEechhcccc-cCCccEEE
Confidence            333344569999999999999999875   37999999999999999999999998 79999999877655 56788765


Q ss_pred             EE
Q 019802          316 LI  317 (335)
Q Consensus       316 ~I  317 (335)
                      +.
T Consensus       190 ~~  191 (287)
T PRK12335        190 ST  191 (287)
T ss_pred             Ec
Confidence            44

>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase

Probab=98.57  E-value=3.1e-07  Score=81.26  Aligned_cols=71  Identities=21%  Similarity=0.263  Sum_probs=58.3

Q ss_pred             CCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCceEE
Q 019802          238 APKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVS  315 (335)
Q Consensus       238 ~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~~~~~~fd~V~  315 (335)
                      ...++.+|||+|||+|..+..++...+ ..+++++|+|+.+++.+++++     .++.+.++|+.+ +..+++||.|.
T Consensus        40 ~~~~~~~VLDiGCG~G~~~~~L~~~~~-~~~v~giDiS~~~l~~A~~~~-----~~~~~~~~d~~~-~~~~~sfD~V~  110 (204)
T TIGR03587        40 RLPKIASILELGANIGMNLAALKRLLP-FKHIYGVEINEYAVEKAKAYL-----PNINIIQGSLFD-PFKDNFFDLVL  110 (204)
T ss_pred             hcCCCCcEEEEecCCCHHHHHHHHhCC-CCeEEEEECCHHHHHHHHhhC-----CCCcEEEeeccC-CCCCCCEEEEE
Confidence            345678999999999999999988754 479999999999999998874     256788899888 66677888643

Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme

>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase

Probab=98.56  E-value=4e-07  Score=81.27  Aligned_cols=72  Identities=24%  Similarity=0.313  Sum_probs=61.8

Q ss_pred             CCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCC-CcEEEEeccCCCCCCCCCCCceEEE
Q 019802          239 PKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGA-ANIEVLHGDFLNLDPKDPAYSEVSL  316 (335)
Q Consensus       239 ~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~-~ni~~~~~D~~~~~~~~~~fd~V~~  316 (335)
                      +.++.+|||+|||+|..+..++..   ..+|+++|+|+.++..+++++...+. .++.+.++|+..++   ++||.|.+
T Consensus        53 ~~~~~~vLDiGcG~G~~~~~la~~---~~~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~---~~fD~ii~  125 (219)
T TIGR02021        53 PLKGKRVLDAGCGTGLLSIELAKR---GAIVKAVDISEQMVQMARNRAQGRDVAGNVEFEVNDLLSLC---GEFDIVVC  125 (219)
T ss_pred             CCCCCEEEEEeCCCCHHHHHHHHC---CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChhhCC---CCcCEEEE
Confidence            467899999999999999999875   35899999999999999999988776 47999999998876   56887543

This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.

>KOG2730 consensus Methylase [General function prediction only]

Probab=98.56  E-value=4.9e-08  Score=85.20  Aligned_cols=108  Identities=18%  Similarity=0.255  Sum_probs=81.2

Q ss_pred             cccceEEecCch-HHHHHHH-cCCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCc-E
Q 019802          218 IVNGCVFLQGKA-SSMVAAA-LAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAAN-I  294 (335)
Q Consensus       218 ~~~g~~~iQd~~-s~l~~~~-l~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~n-i  294 (335)
                      ..+|+|++--+. +..++.. ...-.-+.|+|..||.||-|++.+..   ...|+++|+++.++..+++|++-+|+++ |
T Consensus        69 d~e~wfsvTpe~ia~~iA~~v~~~~~~~~iidaf~g~gGntiqfa~~---~~~VisIdiDPikIa~AkhNaeiYGI~~rI  145 (263)
T KOG2730|consen   69 DREGWFSVTPEKIAEHIANRVVACMNAEVIVDAFCGVGGNTIQFALQ---GPYVIAIDIDPVKIACARHNAEVYGVPDRI  145 (263)
T ss_pred             cccceEEeccHHHHHHHHHHHHHhcCcchhhhhhhcCCchHHHHHHh---CCeEEEEeccHHHHHHHhccceeecCCcee
Confidence            456777765432 1222211 11124578999999999999999877   3579999999999999999999999965 9


Q ss_pred             EEEeccCCCCCCCCCCC--ceEEEEEEeccccccccc
Q 019802          295 EVLHGDFLNLDPKDPAY--SEVSLIFCIFTWMIIMFH  329 (335)
Q Consensus       295 ~~~~~D~~~~~~~~~~f--d~V~~IllD~~cs~~g~~  329 (335)
                      .++++|+.++-.... |  |.+++|++-|||+|+|..
T Consensus       146 tFI~GD~ld~~~~lq-~~K~~~~~vf~sppwggp~y~  181 (263)
T KOG2730|consen  146 TFICGDFLDLASKLK-ADKIKYDCVFLSPPWGGPSYL  181 (263)
T ss_pred             EEEechHHHHHHHHh-hhhheeeeeecCCCCCCcchh
Confidence            999999987653221 2  358899999999999874

>PHA03412 putative methyltransferase; Provisional

Probab=98.55  E-value=2.2e-07  Score=83.25  Aligned_cols=79  Identities=19%  Similarity=0.236  Sum_probs=64.2

Q ss_pred             CCCCEEEEEcCCCchHHHHHHHHcC--CCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCceEEEE
Q 019802          240 KPGWKVLDACSAPGNKTVHLAALMK--GKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVSLI  317 (335)
Q Consensus       240 ~~g~~VLD~cagpG~kt~~la~~~~--~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~~~~~~fd~V~~I  317 (335)
                      ..+.+|||+|||+|..+..+++.+.  +...|+++|+++.+++.+++|..     ++.++++|+...+. +.+||   .|
T Consensus        48 ~~~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~~-----~~~~~~~D~~~~~~-~~~FD---lI  118 (241)
T PHA03412         48 CTSGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIVP-----EATWINADALTTEF-DTLFD---MA  118 (241)
T ss_pred             cCCCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhcc-----CCEEEEcchhcccc-cCCcc---EE
Confidence            3478999999999999999998763  35699999999999999998853     47899999987654 34565   59


Q ss_pred             EEeccccccc
Q 019802          318 FCIFTWMIIM  327 (335)
Q Consensus       318 llD~~cs~~g  327 (335)
                      +.+||-.-.+
T Consensus       119 IsNPPY~~~~  128 (241)
T PHA03412        119 ISNPPFGKIK  128 (241)
T ss_pred             EECCCCCCcc
Confidence            9999987544

>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional

Probab=98.54  E-value=4e-07  Score=84.16  Aligned_cols=74  Identities=14%  Similarity=0.144  Sum_probs=61.8

Q ss_pred             CCCCEEEEEcCCCchHHHHHHHHcCCC--eEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCceEEEE
Q 019802          240 KPGWKVLDACSAPGNKTVHLAALMKGK--GKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVSLI  317 (335)
Q Consensus       240 ~~g~~VLD~cagpG~kt~~la~~~~~~--g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~~~~~~fd~V~~I  317 (335)
                      .++.+|||+|||+|..+..++...+..  ..|+++|+|+.+++.++++.     .++.+.++|+.++++.+++||.|..+
T Consensus        84 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~-----~~~~~~~~d~~~lp~~~~sfD~I~~~  158 (272)
T PRK11088         84 EKATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRY-----PQVTFCVASSHRLPFADQSLDAIIRI  158 (272)
T ss_pred             CCCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhC-----CCCeEEEeecccCCCcCCceeEEEEe
Confidence            456789999999999999999876532  37999999999999987652     46889999999998888899987655


Q ss_pred             E
Q 019802          318 F  318 (335)
Q Consensus       318 l  318 (335)
                      +
T Consensus       159 ~  159 (272)
T PRK11088        159 Y  159 (272)
T ss_pred             c
Confidence            4

>PLN03075 nicotianamine synthase; Provisional

Probab=98.54  E-value=3.5e-07  Score=84.75  Aligned_cols=77  Identities=10%  Similarity=0.032  Sum_probs=62.6

Q ss_pred             CCCEEEEEcCCCchHHHHHH-HHcCCCeEEEEEeCCHHHHHHHHHHHHH-hCCCc-EEEEeccCCCCCCCCCCCceEEEE
Q 019802          241 PGWKVLDACSAPGNKTVHLA-ALMKGKGKIVACELNKERVRRLKDTIKL-SGAAN-IEVLHGDFLNLDPKDPAYSEVSLI  317 (335)
Q Consensus       241 ~g~~VLD~cagpG~kt~~la-~~~~~~g~i~a~D~~~~rl~~~~~~~~~-~g~~n-i~~~~~D~~~~~~~~~~fd~V~~I  317 (335)
                      ++++|+|+|||||+.|..+. ....++++++++|+++.+++.+++++++ .|+.+ |++..+|+.+.......||.   |
T Consensus       123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~~l~~FDl---V  199 (296)
T PLN03075        123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTESLKEYDV---V  199 (296)
T ss_pred             CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhcccccCCcCE---E
Confidence            77899999999998876543 3455779999999999999999999965 88865 99999999987544456886   5


Q ss_pred             EEe
Q 019802          318 FCI  320 (335)
Q Consensus       318 llD  320 (335)
                      +++
T Consensus       200 F~~  202 (296)
T PLN03075        200 FLA  202 (296)
T ss_pred             EEe
Confidence            555

>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases

Probab=98.53  E-value=1.2e-07  Score=83.88  Aligned_cols=90  Identities=22%  Similarity=0.391  Sum_probs=71.4

Q ss_pred             HHHHHHHcCCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCC-cEEEEeccCCCCCC--
Q 019802          230 SSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAA-NIEVLHGDFLNLDP--  306 (335)
Q Consensus       230 s~l~~~~l~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~-ni~~~~~D~~~~~~--  306 (335)
                      .+++..++......+||++|++.|.-|.+||+.++++|+|+++|+++++.+.+++++++.|+. +|+++.+|+.+.-+  
T Consensus        34 g~lL~~l~~~~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~l~~l  113 (205)
T PF01596_consen   34 GQLLQMLVRLTRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALEVLPEL  113 (205)
T ss_dssp             HHHHHHHHHHHT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHHHHHHH
T ss_pred             HHHHHHHHHhcCCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHhhHHHH
Confidence            344444444445679999999999999999999988899999999999999999999999985 59999999976432  


Q ss_pred             --C--CCCCceEEEEEEecc
Q 019802          307 --K--DPAYSEVSLIFCIFT  322 (335)
Q Consensus       307 --~--~~~fd~V~~IllD~~  322 (335)
                        .  .+.||   -||+|..
T Consensus       114 ~~~~~~~~fD---~VFiDa~  130 (205)
T PF01596_consen  114 ANDGEEGQFD---FVFIDAD  130 (205)
T ss_dssp             HHTTTTTSEE---EEEEEST
T ss_pred             HhccCCCcee---EEEEccc
Confidence              1  13466   4999975

The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....

>TIGR00755 ksgA dimethyladenosine transferase

Probab=98.53  E-value=4.1e-07  Score=83.19  Aligned_cols=89  Identities=20%  Similarity=0.237  Sum_probs=70.5

Q ss_pred             hHHHHHHHcCCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCC
Q 019802          229 ASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKD  308 (335)
Q Consensus       229 ~s~l~~~~l~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~~~~  308 (335)
                      -...+...++..++++|||+|||+|..|..|++..   ..|+++|+++.+++.+++++..  ..+++++++|+.+++.. 
T Consensus        17 i~~~i~~~~~~~~~~~VLEiG~G~G~lt~~L~~~~---~~v~~iE~d~~~~~~l~~~~~~--~~~v~v~~~D~~~~~~~-   90 (253)
T TIGR00755        17 VIQKIVEAANVLEGDVVLEIGPGLGALTEPLLKRA---KKVTAIEIDPRLAEILRKLLSL--YERLEVIEGDALKVDLP-   90 (253)
T ss_pred             HHHHHHHhcCCCCcCEEEEeCCCCCHHHHHHHHhC---CcEEEEECCHHHHHHHHHHhCc--CCcEEEEECchhcCChh-
Confidence            34455666778889999999999999999999884   3599999999999999988754  45799999999988764 


Q ss_pred             CCCceEEEEEEecccc
Q 019802          309 PAYSEVSLIFCIFTWM  324 (335)
Q Consensus       309 ~~fd~V~~IllD~~cs  324 (335)
                       .||....|+-++|-.
T Consensus        91 -~~d~~~~vvsNlPy~  105 (253)
T TIGR00755        91 -DFPKQLKVVSNLPYN  105 (253)
T ss_pred             -HcCCcceEEEcCChh
Confidence             355334566676643

Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase

>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]

Probab=98.52  E-value=3e-07  Score=79.30  Aligned_cols=80  Identities=23%  Similarity=0.315  Sum_probs=66.7

Q ss_pred             CCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCC-CcEEEEeccCCCCCC-CC--CCCceEE
Q 019802          240 KPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGA-ANIEVLHGDFLNLDP-KD--PAYSEVS  315 (335)
Q Consensus       240 ~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~-~ni~~~~~D~~~~~~-~~--~~fd~V~  315 (335)
                      -.|.+|||++||+|..++..+.+  +..+++.+|.+.+-+..+++|++.+++ .++.++..|+..... ..  +.||.  
T Consensus        42 i~g~~~LDlFAGSGaLGlEAlSR--GA~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~~~L~~~~~~~~FDl--  117 (187)
T COG0742          42 IEGARVLDLFAGSGALGLEALSR--GAARVVFVEKDRKAVKILKENLKALGLEGEARVLRNDALRALKQLGTREPFDL--  117 (187)
T ss_pred             cCCCEEEEecCCccHhHHHHHhC--CCceEEEEecCHHHHHHHHHHHHHhCCccceEEEeecHHHHHHhcCCCCcccE--
Confidence            47999999999999999988887  467999999999999999999999995 458899999985421 11  23764  


Q ss_pred             EEEEecccc
Q 019802          316 LIFCIFTWM  324 (335)
Q Consensus       316 ~IllD~~cs  324 (335)
                       |++|||--
T Consensus       118 -VflDPPy~  125 (187)
T COG0742         118 -VFLDPPYA  125 (187)
T ss_pred             -EEeCCCCc
Confidence             99999975

>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional

Probab=98.52  E-value=4.8e-07  Score=87.56  Aligned_cols=80  Identities=19%  Similarity=0.308  Sum_probs=65.4

Q ss_pred             HHHHHHHcCCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCC
Q 019802          230 SSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDP  309 (335)
Q Consensus       230 s~l~~~~l~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~~~~~  309 (335)
                      ...+...+.+++|.+|||+|||+|+.+.++++..  +.+|+++|+|+.+++.++++++  +. ++++...|...+   ++
T Consensus       156 ~~~l~~~l~l~~g~rVLDIGcG~G~~a~~la~~~--g~~V~giDlS~~~l~~A~~~~~--~l-~v~~~~~D~~~l---~~  227 (383)
T PRK11705        156 LDLICRKLQLKPGMRVLDIGCGWGGLARYAAEHY--GVSVVGVTISAEQQKLAQERCA--GL-PVEIRLQDYRDL---NG  227 (383)
T ss_pred             HHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHhc--cC-eEEEEECchhhc---CC
Confidence            3455667788999999999999999999999875  3689999999999999999986  33 478888898766   35


Q ss_pred             CCceEEEE
Q 019802          310 AYSEVSLI  317 (335)
Q Consensus       310 ~fd~V~~I  317 (335)
                      +||.|.++
T Consensus       228 ~fD~Ivs~  235 (383)
T PRK11705        228 QFDRIVSV  235 (383)
T ss_pred             CCCEEEEe
Confidence            69976543

>PLN02336 phosphoethanolamine N-methyltransferase

Probab=98.51  E-value=6.8e-07  Score=89.05  Aligned_cols=81  Identities=19%  Similarity=0.178  Sum_probs=66.6

Q ss_pred             HHHHcCCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCc
Q 019802          233 VAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYS  312 (335)
Q Consensus       233 ~~~~l~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~~~~~~fd  312 (335)
                      +...+.+.++.+|||+|||+|..+..++...  +.+|+++|+|+.+++.++++....+ .++++.++|+...+.++++||
T Consensus       258 l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~--~~~v~gvDiS~~~l~~A~~~~~~~~-~~v~~~~~d~~~~~~~~~~fD  334 (475)
T PLN02336        258 FVDKLDLKPGQKVLDVGCGIGGGDFYMAENF--DVHVVGIDLSVNMISFALERAIGRK-CSVEFEVADCTKKTYPDNSFD  334 (475)
T ss_pred             HHHhcCCCCCCEEEEEeccCCHHHHHHHHhc--CCEEEEEECCHHHHHHHHHHhhcCC-CceEEEEcCcccCCCCCCCEE
Confidence            4445567789999999999999999999875  4689999999999999999887444 368999999998876667788


Q ss_pred             eEEE
Q 019802          313 EVSL  316 (335)
Q Consensus       313 ~V~~  316 (335)
                      .|.+
T Consensus       335 ~I~s  338 (475)
T PLN02336        335 VIYS  338 (475)
T ss_pred             EEEE
Confidence            7544

>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional

Probab=98.51  E-value=3.3e-07  Score=81.44  Aligned_cols=69  Identities=25%  Similarity=0.438  Sum_probs=54.8

Q ss_pred             CCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCC--------CCCCC
Q 019802          239 PKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLD--------PKDPA  310 (335)
Q Consensus       239 ~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~--------~~~~~  310 (335)
                      .++|.+|||+|||||+.+..+++..++.+.|+|+|+++ +          .+..+++++++|+.+..        ..+.+
T Consensus        49 ~~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~-~----------~~~~~v~~i~~D~~~~~~~~~i~~~~~~~~  117 (209)
T PRK11188         49 FKPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILP-M----------DPIVGVDFLQGDFRDELVLKALLERVGDSK  117 (209)
T ss_pred             CCCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccc-c----------cCCCCcEEEecCCCChHHHHHHHHHhCCCC
Confidence            46789999999999999999999987778999999988 1          13457899999998853        33445


Q ss_pred             CceEEEEEEec
Q 019802          311 YSEVSLIFCIF  321 (335)
Q Consensus       311 fd~V~~IllD~  321 (335)
                      ||   .|+.|+
T Consensus       118 ~D---~V~S~~  125 (209)
T PRK11188        118 VQ---VVMSDM  125 (209)
T ss_pred             CC---EEecCC
Confidence            66   477664

>PHA03411 putative methyltransferase; Provisional

Probab=98.50  E-value=8.1e-07  Score=81.32  Aligned_cols=80  Identities=24%  Similarity=0.312  Sum_probs=64.4

Q ss_pred             cCCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCceEEE
Q 019802          237 LAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVSL  316 (335)
Q Consensus       237 l~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~~~~~~fd~V~~  316 (335)
                      +.+.++.+|||+|||+|..+..++...+ ..+|+++|+++.+++.+++++     .++.++++|+.++.. ...||   .
T Consensus        60 ~~~~~~grVLDLGcGsGilsl~la~r~~-~~~V~gVDisp~al~~Ar~n~-----~~v~~v~~D~~e~~~-~~kFD---l  129 (279)
T PHA03411         60 IDAHCTGKVLDLCAGIGRLSFCMLHRCK-PEKIVCVELNPEFARIGKRLL-----PEAEWITSDVFEFES-NEKFD---V  129 (279)
T ss_pred             hccccCCeEEEcCCCCCHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHhC-----cCCEEEECchhhhcc-cCCCc---E
Confidence            3456678999999999999999888743 369999999999999998874     368899999988763 34566   5


Q ss_pred             EEEecccccc
Q 019802          317 IFCIFTWMII  326 (335)
Q Consensus       317 IllD~~cs~~  326 (335)
                      |+.|||.-..
T Consensus       130 IIsNPPF~~l  139 (279)
T PHA03411        130 VISNPPFGKI  139 (279)
T ss_pred             EEEcCCcccc
Confidence            9999987643

>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species

Probab=98.48  E-value=1.8e-07  Score=86.58  Aligned_cols=105  Identities=21%  Similarity=0.212  Sum_probs=78.8

Q ss_pred             CcccccceEEecCchHHHHHHHcCCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCC--
Q 019802          215 HPLIVNGCVFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAA--  292 (335)
Q Consensus       215 ~~~~~~g~~~iQd~~s~l~~~~l~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~--  292 (335)
                      ..+-+.|.|.-|...-.++....   .|.+|||++|-+||.+.+.+.  ++..+|+++|.|...++.+++|++..|++  
T Consensus       100 ~~gqktGlFlDqR~nR~~v~~~~---~gkrvLnlFsYTGgfsv~Aa~--gGA~~v~~VD~S~~al~~a~~N~~lNg~~~~  174 (286)
T PF10672_consen  100 TDGQKTGLFLDQRENRKWVRKYA---KGKRVLNLFSYTGGFSVAAAA--GGAKEVVSVDSSKRALEWAKENAALNGLDLD  174 (286)
T ss_dssp             SSSSSTSS-GGGHHHHHHHHHHC---TTCEEEEET-TTTHHHHHHHH--TTESEEEEEES-HHHHHHHHHHHHHTT-CCT
T ss_pred             CCCCcceEcHHHHhhHHHHHHHc---CCCceEEecCCCCHHHHHHHH--CCCCEEEEEeCCHHHHHHHHHHHHHcCCCcc
Confidence            34678999999999988887764   588999999999999998764  45568999999999999999999999874  


Q ss_pred             cEEEEeccCCCCCC---CCCCCceEEEEEEeccccccc
Q 019802          293 NIEVLHGDFLNLDP---KDPAYSEVSLIFCIFTWMIIM  327 (335)
Q Consensus       293 ni~~~~~D~~~~~~---~~~~fd~V~~IllD~~cs~~g  327 (335)
                      .++++++|+.+.-.   ....||   .|+||||.-.-|
T Consensus       175 ~~~~~~~Dvf~~l~~~~~~~~fD---~IIlDPPsF~k~  209 (286)
T PF10672_consen  175 RHRFIQGDVFKFLKRLKKGGRFD---LIILDPPSFAKS  209 (286)
T ss_dssp             CEEEEES-HHHHHHHHHHTT-EE---EEEE--SSEESS
T ss_pred             ceEEEecCHHHHHHHHhcCCCCC---EEEECCCCCCCC
Confidence            69999999976322   233565   599999976554

The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.

>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed

Probab=98.47  E-value=6.3e-07  Score=89.82  Aligned_cols=81  Identities=10%  Similarity=0.230  Sum_probs=66.7

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCC-cEEEEeccCCCCCCCCCCCceEEEEEE
Q 019802          241 PGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAA-NIEVLHGDFLNLDPKDPAYSEVSLIFC  319 (335)
Q Consensus       241 ~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~-ni~~~~~D~~~~~~~~~~fd~V~~Ill  319 (335)
                      ++.+|||+|||+|..+..++...+ ..+|+++|+|+.+++.+++|+++.|+. ++.++++|+.+.. ....||   .|++
T Consensus       138 ~~~~VLDlG~GsG~iai~la~~~p-~~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~~~-~~~~fD---lIvs  212 (506)
T PRK01544        138 KFLNILELGTGSGCIAISLLCELP-NANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFENI-EKQKFD---FIVS  212 (506)
T ss_pred             CCCEEEEccCchhHHHHHHHHHCC-CCeEEEEECCHHHHHHHHHHHHHcCCccceeeeecchhhhC-cCCCcc---EEEE
Confidence            457899999999999999988754 579999999999999999999999985 5899999986532 223465   5999


Q ss_pred             ecccccc
Q 019802          320 IFTWMII  326 (335)
Q Consensus       320 D~~cs~~  326 (335)
                      +||....
T Consensus       213 NPPYi~~  219 (506)
T PRK01544        213 NPPYISH  219 (506)
T ss_pred             CCCCCCc
Confidence            9987654

>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases

Probab=98.44  E-value=1.8e-06  Score=76.58  Aligned_cols=80  Identities=24%  Similarity=0.338  Sum_probs=65.4

Q ss_pred             HHHHcCCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCc
Q 019802          233 VAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYS  312 (335)
Q Consensus       233 ~~~~l~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~~~~~~fd  312 (335)
                      +...+...++.+|||+|||+|..+..++...++.++++++|+++..++.++++..  ...++.+..+|+.+++...+.||
T Consensus        31 ~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~--~~~~i~~~~~d~~~~~~~~~~~D  108 (223)
T TIGR01934        31 AVKLIGVFKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSE--LPLNIEFIQADAEALPFEDNSFD  108 (223)
T ss_pred             HHHHhccCCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhc--cCCCceEEecchhcCCCCCCcEE
Confidence            3444556688999999999999999999887544799999999999999999886  34568999999998876556677


Q ss_pred             eE
Q 019802          313 EV  314 (335)
Q Consensus       313 ~V  314 (335)
                      .|
T Consensus       109 ~i  110 (223)
T TIGR01934       109 AV  110 (223)
T ss_pred             EE
Confidence            64

Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.

>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB

Probab=98.44  E-value=1.5e-06  Score=75.82  Aligned_cols=85  Identities=19%  Similarity=0.201  Sum_probs=62.9

Q ss_pred             ecCchHHHHHHHcCCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCC
Q 019802          225 LQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNL  304 (335)
Q Consensus       225 iQd~~s~l~~~~l~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~  304 (335)
                      +....|.+ ...+..-++.++||+|||.|.-+..||++   +..|+|+|.|+..++.+++.+++.+++ |++.+.|..+.
T Consensus        15 ~~~~hs~v-~~a~~~~~~g~~LDlgcG~GRNalyLA~~---G~~VtAvD~s~~al~~l~~~a~~~~l~-i~~~~~Dl~~~   89 (192)
T PF03848_consen   15 LTPTHSEV-LEAVPLLKPGKALDLGCGEGRNALYLASQ---GFDVTAVDISPVALEKLQRLAEEEGLD-IRTRVADLNDF   89 (192)
T ss_dssp             B----HHH-HHHCTTS-SSEEEEES-TTSHHHHHHHHT---T-EEEEEESSHHHHHHHHHHHHHTT-T-EEEEE-BGCCB
T ss_pred             CCCCcHHH-HHHHhhcCCCcEEEcCCCCcHHHHHHHHC---CCeEEEEECCHHHHHHHHHHHhhcCce-eEEEEecchhc
Confidence            33444553 44566667789999999999999999987   478999999999999999999999996 99999999887


Q ss_pred             CCCCCCCceEE
Q 019802          305 DPKDPAYSEVS  315 (335)
Q Consensus       305 ~~~~~~fd~V~  315 (335)
                      .++ ..||.|.
T Consensus        90 ~~~-~~yD~I~   99 (192)
T PF03848_consen   90 DFP-EEYDFIV   99 (192)
T ss_dssp             S-T-TTEEEEE
T ss_pred             ccc-CCcCEEE
Confidence            765 4577543

When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.

>KOG2904 consensus Predicted methyltransferase [General function prediction only]

Probab=98.43  E-value=1.2e-06  Score=79.14  Aligned_cols=83  Identities=16%  Similarity=0.218  Sum_probs=64.0

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCc-EEEEeccCCC--CCCCCCCCceEEEE
Q 019802          241 PGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAAN-IEVLHGDFLN--LDPKDPAYSEVSLI  317 (335)
Q Consensus       241 ~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~n-i~~~~~D~~~--~~~~~~~fd~V~~I  317 (335)
                      .+..+||+|||+|..+..++..++ ++.|+|+|.|+..+..+.+|++|+++.+ +.+++.+.+.  ..+..-.....+.+
T Consensus       148 ~~~~ildlgtGSGaIslsll~~L~-~~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~v~~~~me~d~~~~~~l~~~~~dll  226 (328)
T KOG2904|consen  148 KHTHILDLGTGSGAISLSLLHGLP-QCTVTAIDVSKAAIKLAKENAQRLKLSGRIEVIHNIMESDASDEHPLLEGKIDLL  226 (328)
T ss_pred             ccceEEEecCCccHHHHHHHhcCC-CceEEEEeccHHHHHHHHHHHHHHhhcCceEEEecccccccccccccccCceeEE
Confidence            456899999999999999999887 7999999999999999999999999866 6677554433  11111112345568


Q ss_pred             EEecccc
Q 019802          318 FCIFTWM  324 (335)
Q Consensus       318 llD~~cs  324 (335)
                      +.+||.-
T Consensus       227 vsNPPYI  233 (328)
T KOG2904|consen  227 VSNPPYI  233 (328)
T ss_pred             ecCCCcc
Confidence            8898864

>PRK06922 hypothetical protein; Provisional

Probab=98.43  E-value=1.2e-06  Score=88.67  Aligned_cols=79  Identities=16%  Similarity=0.224  Sum_probs=65.1

Q ss_pred             HHHcCCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCC--CCCCCC
Q 019802          234 AAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLD--PKDPAY  311 (335)
Q Consensus       234 ~~~l~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~--~~~~~f  311 (335)
                      ...++..+|.+|||+|||+|..+..+++.. +.++++++|+|+.+++.++++....+. ++.++++|+.+++  +.+++|
T Consensus       411 ~~i~d~~~g~rVLDIGCGTG~ls~~LA~~~-P~~kVtGIDIS~~MLe~Ararl~~~g~-~ie~I~gDa~dLp~~fedeSF  488 (677)
T PRK06922        411 RIILDYIKGDTIVDVGAGGGVMLDMIEEET-EDKRIYGIDISENVIDTLKKKKQNEGR-SWNVIKGDAINLSSSFEKESV  488 (677)
T ss_pred             HHHhhhcCCCEEEEeCCCCCHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHhhhcCC-CeEEEEcchHhCccccCCCCE
Confidence            335566679999999999999999998875 468999999999999999999876664 6889999998876  455667


Q ss_pred             ceE
Q 019802          312 SEV  314 (335)
Q Consensus       312 d~V  314 (335)
                      |.|
T Consensus       489 DvV  491 (677)
T PRK06922        489 DTI  491 (677)
T ss_pred             EEE
Confidence            753

>COG2520 Predicted methyltransferase [General function prediction only]

Probab=98.43  E-value=5.8e-07  Score=84.77  Aligned_cols=81  Identities=25%  Similarity=0.308  Sum_probs=70.2

Q ss_pred             CCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCc-EEEEeccCCCCCCCCCCCceEEEE
Q 019802          239 PKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAAN-IEVLHGDFLNLDPKDPAYSEVSLI  317 (335)
Q Consensus       239 ~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~n-i~~~~~D~~~~~~~~~~fd~V~~I  317 (335)
                      ..+|++|+||.||-|..|+.+|..-  ..+|+|+|+++..++.+++|++..++.+ |+.+++|+....+....||+   |
T Consensus       186 v~~GE~V~DmFAGVGpfsi~~Ak~g--~~~V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~rev~~~~~~aDr---I  260 (341)
T COG2520         186 VKEGETVLDMFAGVGPFSIPIAKKG--RPKVYAIDINPDAVEYLKENIRLNKVEGRVEPILGDAREVAPELGVADR---I  260 (341)
T ss_pred             hcCCCEEEEccCCcccchhhhhhcC--CceEEEEecCHHHHHHHHHHHHhcCccceeeEEeccHHHhhhccccCCE---E
Confidence            3569999999999999999999873  3349999999999999999999999988 89999999999887566887   7


Q ss_pred             EEecccc
Q 019802          318 FCIFTWM  324 (335)
Q Consensus       318 llD~~cs  324 (335)
                      ++..|-+
T Consensus       261 im~~p~~  267 (341)
T COG2520         261 IMGLPKS  267 (341)
T ss_pred             EeCCCCc
Confidence            7766654

>PLN02585 magnesium protoporphyrin IX methyltransferase

Probab=98.42  E-value=1.1e-06  Score=82.79  Aligned_cols=71  Identities=20%  Similarity=0.199  Sum_probs=58.1

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhC-----CCcEEEEeccCCCCCCCCCCCceEE
Q 019802          241 PGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSG-----AANIEVLHGDFLNLDPKDPAYSEVS  315 (335)
Q Consensus       241 ~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g-----~~ni~~~~~D~~~~~~~~~~fd~V~  315 (335)
                      +|.+|||+|||+|..+..++..   ..+|+++|+|+.+++.++++.+..+     ..++.+.+.|...+   +++||.|.
T Consensus       144 ~~~~VLDlGcGtG~~a~~la~~---g~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~l---~~~fD~Vv  217 (315)
T PLN02585        144 AGVTVCDAGCGTGSLAIPLALE---GAIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLESL---SGKYDTVT  217 (315)
T ss_pred             CCCEEEEecCCCCHHHHHHHHC---CCEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhhc---CCCcCEEE
Confidence            5789999999999999999975   3689999999999999999998763     23578888887654   35698764


Q ss_pred             EE
Q 019802          316 LI  317 (335)
Q Consensus       316 ~I  317 (335)
                      +.
T Consensus       218 ~~  219 (315)
T PLN02585        218 CL  219 (315)
T ss_pred             Ec
Confidence            43

>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria

Probab=98.41  E-value=2e-07  Score=86.71  Aligned_cols=92  Identities=24%  Similarity=0.349  Sum_probs=67.7

Q ss_pred             HHHHcCCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCC---CC
Q 019802          233 VAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPK---DP  309 (335)
Q Consensus       233 ~~~~l~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~~~---~~  309 (335)
                      +...|.++++..++|+.-|.||.|.++.+..++ ++|+|+|.++..++.++++++..+ .++.+++.++.++...   ..
T Consensus        12 vl~~L~~~~~g~~vD~T~G~GGHS~aiL~~~~~-~~li~~DrD~~a~~~a~~~l~~~~-~r~~~~~~~F~~l~~~l~~~~   89 (310)
T PF01795_consen   12 VLEALNPKPGGIYVDCTFGGGGHSKAILEKLPN-GRLIGIDRDPEALERAKERLKKFD-DRFIFIHGNFSNLDEYLKELN   89 (310)
T ss_dssp             HHHHHT--TT-EEEETT-TTSHHHHHHHHT-TT--EEEEEES-HHHHHHHHCCTCCCC-TTEEEEES-GGGHHHHHHHTT
T ss_pred             HHHhhCcCCCceEEeecCCcHHHHHHHHHhCCC-CeEEEecCCHHHHHHHHHHHhhcc-ceEEEEeccHHHHHHHHHHcc
Confidence            566788999999999999999999999998877 999999999999999999888653 4699999999887642   22


Q ss_pred             CCceEEEEEEecccccc
Q 019802          310 AYSEVSLIFCIFTWMII  326 (335)
Q Consensus       310 ~fd~V~~IllD~~cs~~  326 (335)
                      ....|++||+|.++|..
T Consensus        90 ~~~~~dgiL~DLGvSS~  106 (310)
T PF01795_consen   90 GINKVDGILFDLGVSSM  106 (310)
T ss_dssp             TTS-EEEEEEE-S--HH
T ss_pred             CCCccCEEEEccccCHH
Confidence            46789999999999963

The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.

>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]

Probab=98.40  E-value=1.3e-06  Score=80.26  Aligned_cols=94  Identities=19%  Similarity=0.293  Sum_probs=81.8

Q ss_pred             HHHHHcCCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCC--CC
Q 019802          232 MVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPK--DP  309 (335)
Q Consensus       232 l~~~~l~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~~~--~~  309 (335)
                      -+...|.++|+...+|+.-|-||.+..+.+..++.|+++++|.++..++.+++.+...+ .++.+++..+.++...  ..
T Consensus        14 E~i~~L~~~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~~-~r~~~v~~~F~~l~~~l~~~   92 (314)
T COG0275          14 EVVELLAPKPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEFD-GRVTLVHGNFANLAEALKEL   92 (314)
T ss_pred             HHHHhcccCCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhccC-CcEEEEeCcHHHHHHHHHhc
Confidence            35678899999999999999999999999999888999999999999999999999877 5799999998887643  22


Q ss_pred             CCceEEEEEEecccccc
Q 019802          310 AYSEVSLIFCIFTWMII  326 (335)
Q Consensus       310 ~fd~V~~IllD~~cs~~  326 (335)
                      ....||+||+|.+.|+-
T Consensus        93 ~i~~vDGiL~DLGVSS~  109 (314)
T COG0275          93 GIGKVDGILLDLGVSSP  109 (314)
T ss_pred             CCCceeEEEEeccCCcc
Confidence            35678899999999863

>TIGR00406 prmA ribosomal protein L11 methyltransferase

Probab=98.40  E-value=2e-06  Score=80.18  Aligned_cols=86  Identities=15%  Similarity=0.174  Sum_probs=62.2

Q ss_pred             hHHHHHHHcC--CCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCc-EEEEeccCCCCC
Q 019802          229 ASSMVAAALA--PKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAAN-IEVLHGDFLNLD  305 (335)
Q Consensus       229 ~s~l~~~~l~--~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~n-i~~~~~D~~~~~  305 (335)
                      ..+++...+.  ..+|.+|||+|||+|..+..++.+ + ..+|+++|+++.+++.+++|+...++.+ +.+...|...  
T Consensus       145 tt~l~l~~l~~~~~~g~~VLDvGcGsG~lai~aa~~-g-~~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~~~--  220 (288)
T TIGR00406       145 TTSLCLEWLEDLDLKDKNVIDVGCGSGILSIAALKL-G-AAKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYLEQ--  220 (288)
T ss_pred             HHHHHHHHHHhhcCCCCEEEEeCCChhHHHHHHHHc-C-CCeEEEEECCHHHHHHHHHHHHHcCCCcceEEEeccccc--
Confidence            3444444333  457899999999999999887764 3 4699999999999999999999988864 5666665322  


Q ss_pred             CCCCCCceEEEEEEec
Q 019802          306 PKDPAYSEVSLIFCIF  321 (335)
Q Consensus       306 ~~~~~fd~V~~IllD~  321 (335)
                      .....||.   |+++.
T Consensus       221 ~~~~~fDl---Vvan~  233 (288)
T TIGR00406       221 PIEGKADV---IVANI  233 (288)
T ss_pred             ccCCCceE---EEEec
Confidence            22446776   45443

Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.

>PRK10742 putative methyltransferase; Provisional

Probab=98.40  E-value=9.1e-07  Score=79.68  Aligned_cols=89  Identities=20%  Similarity=0.270  Sum_probs=74.2

Q ss_pred             HHHHHHHcCCCCCC--EEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHh------CC---CcEEEEe
Q 019802          230 SSMVAAALAPKPGW--KVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLS------GA---ANIEVLH  298 (335)
Q Consensus       230 s~l~~~~l~~~~g~--~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~------g~---~ni~~~~  298 (335)
                      .+.++..+++++|.  +|||++||.|.-++.++.+   +++|+++|.|+.....++++++++      +.   .++++++
T Consensus        75 ~~~l~kAvglk~g~~p~VLD~TAGlG~Da~~las~---G~~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~  151 (250)
T PRK10742         75 GEAVAKAVGIKGDYLPDVVDATAGLGRDAFVLASV---GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIH  151 (250)
T ss_pred             ccHHHHHhCCCCCCCCEEEECCCCccHHHHHHHHc---CCEEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEe
Confidence            46778889999998  9999999999999999988   467999999999999999999996      42   5699999


Q ss_pred             ccCCCCCCC-CCCCceEEEEEEecccc
Q 019802          299 GDFLNLDPK-DPAYSEVSLIFCIFTWM  324 (335)
Q Consensus       299 ~D~~~~~~~-~~~fd~V~~IllD~~cs  324 (335)
                      +|+.++-.. ...||   .|++||+--
T Consensus       152 ~da~~~L~~~~~~fD---VVYlDPMfp  175 (250)
T PRK10742        152 ASSLTALTDITPRPQ---VVYLDPMFP  175 (250)
T ss_pred             CcHHHHHhhCCCCCc---EEEECCCCC
Confidence            999776432 22455   699998754

>TIGR02072 BioC biotin biosynthesis protein BioC

Probab=98.38  E-value=1.1e-06  Score=78.73  Aligned_cols=86  Identities=19%  Similarity=0.230  Sum_probs=66.5

Q ss_pred             EecCchHHHHHHHcCC---CCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEecc
Q 019802          224 FLQGKASSMVAAALAP---KPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGD  300 (335)
Q Consensus       224 ~iQd~~s~l~~~~l~~---~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D  300 (335)
                      .+|...+..+...+..   ..+.+|||+|||+|..+.++++.. +..+++++|+++.+++.+++++.    .++.++.+|
T Consensus        14 ~~q~~~~~~l~~~~~~~~~~~~~~vLDlG~G~G~~~~~l~~~~-~~~~~~~~D~~~~~~~~~~~~~~----~~~~~~~~d   88 (240)
T TIGR02072        14 KIQREMAKRLLALLKEKGIFIPASVLDIGCGTGYLTRALLKRF-PQAEFIALDISAGMLAQAKTKLS----ENVQFICGD   88 (240)
T ss_pred             HHHHHHHHHHHHHhhhhccCCCCeEEEECCCccHHHHHHHHhC-CCCcEEEEeChHHHHHHHHHhcC----CCCeEEecc
Confidence            3555555444444432   345789999999999999999885 45789999999999999888765    378899999


Q ss_pred             CCCCCCCCCCCceE
Q 019802          301 FLNLDPKDPAYSEV  314 (335)
Q Consensus       301 ~~~~~~~~~~fd~V  314 (335)
                      +.+.+..+++||.|
T Consensus        89 ~~~~~~~~~~fD~v  102 (240)
T TIGR02072        89 AEKLPLEDSSFDLI  102 (240)
T ss_pred             hhhCCCCCCceeEE
Confidence            99988767778764

This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.

>PLN02589 caffeoyl-CoA O-methyltransferase

Probab=98.38  E-value=7.9e-07  Score=80.79  Aligned_cols=93  Identities=17%  Similarity=0.197  Sum_probs=76.5

Q ss_pred             CchHHHHHHHcCCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCC-CcEEEEeccCCCCC
Q 019802          227 GKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGA-ANIEVLHGDFLNLD  305 (335)
Q Consensus       227 d~~s~l~~~~l~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~-~ni~~~~~D~~~~~  305 (335)
                      ....+++..++......+||++|++.|.-|++||..++++|+|+++|.++++.+.+++++++.|+ .+|+++.+|+.+.-
T Consensus        65 ~~~g~lL~~l~~~~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e~L  144 (247)
T PLN02589         65 ADEGQFLNMLLKLINAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVL  144 (247)
T ss_pred             HHHHHHHHHHHHHhCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHHHH
Confidence            45566666666666678999999999999999999888889999999999999999999999997 46999999997743


Q ss_pred             CC-------CCCCceEEEEEEecc
Q 019802          306 PK-------DPAYSEVSLIFCIFT  322 (335)
Q Consensus       306 ~~-------~~~fd~V~~IllD~~  322 (335)
                      +.       .++||.   ||+|.-
T Consensus       145 ~~l~~~~~~~~~fD~---iFiDad  165 (247)
T PLN02589        145 DQMIEDGKYHGTFDF---IFVDAD  165 (247)
T ss_pred             HHHHhccccCCcccE---EEecCC
Confidence            22       245775   888853

>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated

Probab=98.37  E-value=2.2e-06  Score=76.80  Aligned_cols=70  Identities=24%  Similarity=0.346  Sum_probs=58.2

Q ss_pred             CCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCC-CcEEEEeccCCCCCCCCCCCceE
Q 019802          239 PKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGA-ANIEVLHGDFLNLDPKDPAYSEV  314 (335)
Q Consensus       239 ~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~-~ni~~~~~D~~~~~~~~~~fd~V  314 (335)
                      ..++.+|||+|||+|..+..++..   ...|+++|+++.+++.+++++...+. .++.+..+|..   ..+++||.|
T Consensus        61 ~~~~~~vLDvGcG~G~~~~~l~~~---~~~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~---~~~~~fD~v  131 (230)
T PRK07580         61 DLTGLRILDAGCGVGSLSIPLARR---GAKVVASDISPQMVEEARERAPEAGLAGNITFEVGDLE---SLLGRFDTV  131 (230)
T ss_pred             CCCCCEEEEEeCCCCHHHHHHHHc---CCEEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcCch---hccCCcCEE
Confidence            356889999999999999999875   25699999999999999999998887 56899999843   334568864

>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]

Probab=98.37  E-value=4.9e-07  Score=74.12  Aligned_cols=79  Identities=15%  Similarity=0.228  Sum_probs=67.0

Q ss_pred             CCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCceEEEEE
Q 019802          239 PKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVSLIF  318 (335)
Q Consensus       239 ~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~~~~~~fd~V~~Il  318 (335)
                      --.|..++|+|||.|..++..+  |.....|+++|+++..|+...+|++.+.+ ++.++++|..++.+....||   ..+
T Consensus        46 diEgkkl~DLgcgcGmLs~a~s--m~~~e~vlGfDIdpeALEIf~rNaeEfEv-qidlLqcdildle~~~g~fD---tav  119 (185)
T KOG3420|consen   46 DIEGKKLKDLGCGCGMLSIAFS--MPKNESVLGFDIDPEALEIFTRNAEEFEV-QIDLLQCDILDLELKGGIFD---TAV  119 (185)
T ss_pred             cccCcchhhhcCchhhhHHHhh--cCCCceEEeeecCHHHHHHHhhchHHhhh-hhheeeeeccchhccCCeEe---eEE
Confidence            3468899999999999996555  44567999999999999999999999998 57999999999888776555   588


Q ss_pred             Eeccc
Q 019802          319 CIFTW  323 (335)
Q Consensus       319 lD~~c  323 (335)
                      .|||-
T Consensus       120 iNppF  124 (185)
T KOG3420|consen  120 INPPF  124 (185)
T ss_pred             ecCCC
Confidence            89874

>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional

Probab=98.36  E-value=2.9e-06  Score=80.30  Aligned_cols=80  Identities=20%  Similarity=0.203  Sum_probs=62.2

Q ss_pred             HHHHcCCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhC-CCcEEEEeccCCCCCCCCCCC
Q 019802          233 VAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSG-AANIEVLHGDFLNLDPKDPAY  311 (335)
Q Consensus       233 ~~~~l~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g-~~ni~~~~~D~~~~~~~~~~f  311 (335)
                      +...+++.+|.+|||+|||+|..+..++.. + ...|+++|+|+.++...+...+..+ -.+|.++.+|+.+++. ...|
T Consensus       114 l~~~l~~l~g~~VLDIGCG~G~~~~~la~~-g-~~~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp~-~~~F  190 (322)
T PRK15068        114 VLPHLSPLKGRTVLDVGCGNGYHMWRMLGA-G-AKLVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLPA-LKAF  190 (322)
T ss_pred             HHHhhCCCCCCEEEEeccCCcHHHHHHHHc-C-CCEEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHCCC-cCCc
Confidence            344566678999999999999999999887 3 3479999999999876555444433 2479999999999987 6679


Q ss_pred             ceEE
Q 019802          312 SEVS  315 (335)
Q Consensus       312 d~V~  315 (335)
                      |.|.
T Consensus       191 D~V~  194 (322)
T PRK15068        191 DTVF  194 (322)
T ss_pred             CEEE
Confidence            8653

>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]

Probab=98.36  E-value=5.1e-07  Score=80.38  Aligned_cols=74  Identities=20%  Similarity=0.261  Sum_probs=64.5

Q ss_pred             CCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCceEEEE
Q 019802          240 KPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVSLI  317 (335)
Q Consensus       240 ~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~~~~~~fd~V~~I  317 (335)
                      .+|.+|||+|||-|..+..||.+   +..|+++|++++.++.++..+.+-|+. |...+...+++.....+||.|.+.
T Consensus        58 l~g~~vLDvGCGgG~Lse~mAr~---Ga~VtgiD~se~~I~~Ak~ha~e~gv~-i~y~~~~~edl~~~~~~FDvV~cm  131 (243)
T COG2227          58 LPGLRVLDVGCGGGILSEPLARL---GASVTGIDASEKPIEVAKLHALESGVN-IDYRQATVEDLASAGGQFDVVTCM  131 (243)
T ss_pred             CCCCeEEEecCCccHhhHHHHHC---CCeeEEecCChHHHHHHHHhhhhcccc-ccchhhhHHHHHhcCCCccEEEEh
Confidence            57999999999999999999987   379999999999999999999999984 788888888887766789975543

>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]

Probab=98.35  E-value=9.3e-06  Score=71.72  Aligned_cols=95  Identities=26%  Similarity=0.258  Sum_probs=73.1

Q ss_pred             chHHHHHHHc------CCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccC
Q 019802          228 KASSMVAAAL------APKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDF  301 (335)
Q Consensus       228 ~~s~l~~~~l------~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~  301 (335)
                      .-|.|.+.++      ..++|.+||-+||++|..-.|++...+.+|.|+|++.|+...+.+-+.+++.  +||..+.+|+
T Consensus        54 ~RSKLaAai~~Gl~~~~ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R--~NIiPIl~DA  131 (229)
T PF01269_consen   54 FRSKLAAAILKGLENIPIKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKR--PNIIPILEDA  131 (229)
T ss_dssp             TT-HHHHHHHTT-S--S--TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHS--TTEEEEES-T
T ss_pred             hhhHHHHHHHcCccccCCCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccC--CceeeeeccC
Confidence            3456665543      3678999999999999999999999998999999999999999988877764  5899999999


Q ss_pred             CCCCCCCCCCceEEEEEEecccc
Q 019802          302 LNLDPKDPAYSEVSLIFCIFTWM  324 (335)
Q Consensus       302 ~~~~~~~~~fd~V~~IllD~~cs  324 (335)
                      +.+.....-...||.|+.|....
T Consensus       132 r~P~~Y~~lv~~VDvI~~DVaQp  154 (229)
T PF01269_consen  132 RHPEKYRMLVEMVDVIFQDVAQP  154 (229)
T ss_dssp             TSGGGGTTTS--EEEEEEE-SST
T ss_pred             CChHHhhcccccccEEEecCCCh
Confidence            98765555567999999997643

It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....

>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2

Probab=98.33  E-value=2.1e-06  Score=75.48  Aligned_cols=77  Identities=21%  Similarity=0.201  Sum_probs=61.2

Q ss_pred             CEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCC---CCCCCCceEEEEEE
Q 019802          243 WKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLD---PKDPAYSEVSLIFC  319 (335)
Q Consensus       243 ~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~---~~~~~fd~V~~Ill  319 (335)
                      ..+||+|||.|....++|... ++..++++|++..++..+.+.+.+.|++|+.++++|+..+-   +.++++   +.|.+
T Consensus        19 ~l~lEIG~G~G~~l~~~A~~~-Pd~n~iGiE~~~~~v~~a~~~~~~~~l~Nv~~~~~da~~~l~~~~~~~~v---~~i~i   94 (195)
T PF02390_consen   19 PLILEIGCGKGEFLIELAKRN-PDINFIGIEIRKKRVAKALRKAEKRGLKNVRFLRGDARELLRRLFPPGSV---DRIYI   94 (195)
T ss_dssp             EEEEEET-TTSHHHHHHHHHS-TTSEEEEEES-HHHHHHHHHHHHHHTTSSEEEEES-CTTHHHHHSTTTSE---EEEEE
T ss_pred             CeEEEecCCCCHHHHHHHHHC-CCCCEEEEecchHHHHHHHHHHHhhcccceEEEEccHHHHHhhcccCCch---heEEE
Confidence            389999999999999999985 56899999999999999999999999999999999998832   233444   45777


Q ss_pred             eccc
Q 019802          320 IFTW  323 (335)
Q Consensus       320 D~~c  323 (335)
                      .+|+
T Consensus        95 ~FPD   98 (195)
T PF02390_consen   95 NFPD   98 (195)
T ss_dssp             ES--
T ss_pred             eCCC
Confidence            6654

1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....

>TIGR03438 probable methyltransferase

Probab=98.30  E-value=3.3e-06  Score=79.18  Aligned_cols=65  Identities=12%  Similarity=0.227  Sum_probs=54.2

Q ss_pred             CCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhC-CCcEEEEeccCCCC
Q 019802          240 KPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSG-AANIEVLHGDFLNL  304 (335)
Q Consensus       240 ~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g-~~ni~~~~~D~~~~  304 (335)
                      .++.+|||+|||+|.||..+++.+....+++++|+|+.||+.+.+++.... --+|..+++|+.+.
T Consensus        62 ~~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~  127 (301)
T TIGR03438        62 GAGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGICADFTQP  127 (301)
T ss_pred             CCCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccch
Confidence            467899999999999999999887545789999999999999999987632 12477889999873

This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases

>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]

Probab=98.30  E-value=4.5e-06  Score=75.90  Aligned_cols=89  Identities=21%  Similarity=0.257  Sum_probs=72.6

Q ss_pred             HHHHHHHcCCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCC
Q 019802          230 SSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDP  309 (335)
Q Consensus       230 s~l~~~~l~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~~~~~  309 (335)
                      .+-++...++.+++.||++|+|.|..|..|++.   ..+|+|+|+++..++.+++.+.  ...|++++++|+...++..-
T Consensus        19 ~~kIv~~a~~~~~d~VlEIGpG~GaLT~~Ll~~---~~~v~aiEiD~~l~~~L~~~~~--~~~n~~vi~~DaLk~d~~~l   93 (259)
T COG0030          19 IDKIVEAANISPGDNVLEIGPGLGALTEPLLER---AARVTAIEIDRRLAEVLKERFA--PYDNLTVINGDALKFDFPSL   93 (259)
T ss_pred             HHHHHHhcCCCCCCeEEEECCCCCHHHHHHHhh---cCeEEEEEeCHHHHHHHHHhcc--cccceEEEeCchhcCcchhh
Confidence            456677888999999999999999999999998   3579999999999999999987  44589999999999887642


Q ss_pred             -CCceEEEEEEecccccc
Q 019802          310 -AYSEVSLIFCIFTWMII  326 (335)
Q Consensus       310 -~fd~V~~IllD~~cs~~  326 (335)
                       .+.   .|+-+.|.+-+
T Consensus        94 ~~~~---~vVaNlPY~Is  108 (259)
T COG0030          94 AQPY---KVVANLPYNIS  108 (259)
T ss_pred             cCCC---EEEEcCCCccc
Confidence             233   36667666543

>PLN02490 MPBQ/MSBQ methyltransferase

Probab=98.30  E-value=2.5e-06  Score=81.02  Aligned_cols=71  Identities=13%  Similarity=0.168  Sum_probs=60.5

Q ss_pred             CCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCceE
Q 019802          240 KPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEV  314 (335)
Q Consensus       240 ~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~~~~~~fd~V  314 (335)
                      .++.+|||+|||+|..+..+++..+ ..+++++|+++.+++.++++..   ..+++++.+|+.+++..+++||.|
T Consensus       112 ~~~~~VLDLGcGtG~~~l~La~~~~-~~~VtgVD~S~~mL~~A~~k~~---~~~i~~i~gD~e~lp~~~~sFDvV  182 (340)
T PLN02490        112 DRNLKVVDVGGGTGFTTLGIVKHVD-AKNVTILDQSPHQLAKAKQKEP---LKECKIIEGDAEDLPFPTDYADRY  182 (340)
T ss_pred             CCCCEEEEEecCCcHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHhhh---ccCCeEEeccHHhCCCCCCceeEE
Confidence            4688999999999999999988764 4789999999999999998764   346889999999988777778864

>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]

Probab=98.29  E-value=2.5e-06  Score=79.00  Aligned_cols=88  Identities=20%  Similarity=0.315  Sum_probs=63.9

Q ss_pred             chHHHHHHHcC--CCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCc-EEEEeccCCCC
Q 019802          228 KASSMVAAALA--PKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAAN-IEVLHGDFLNL  304 (335)
Q Consensus       228 ~~s~l~~~~l~--~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~n-i~~~~~D~~~~  304 (335)
                      +..+++...|+  .++|..|||+|||+|-.++..+.+  +..+++|+|+++..++.+++|+.+.|+.. +.....+....
T Consensus       147 pTT~lcL~~Le~~~~~g~~vlDvGcGSGILaIAa~kL--GA~~v~g~DiDp~AV~aa~eNa~~N~v~~~~~~~~~~~~~~  224 (300)
T COG2264         147 PTTSLCLEALEKLLKKGKTVLDVGCGSGILAIAAAKL--GAKKVVGVDIDPQAVEAARENARLNGVELLVQAKGFLLLEV  224 (300)
T ss_pred             hhHHHHHHHHHHhhcCCCEEEEecCChhHHHHHHHHc--CCceEEEecCCHHHHHHHHHHHHHcCCchhhhcccccchhh
Confidence            34455555554  468999999999999999988877  45789999999999999999999999875 22333333332


Q ss_pred             CCCCCCCceEEEEE
Q 019802          305 DPKDPAYSEVSLIF  318 (335)
Q Consensus       305 ~~~~~~fd~V~~Il  318 (335)
                      + ....||.|.+-+
T Consensus       225 ~-~~~~~DvIVANI  237 (300)
T COG2264         225 P-ENGPFDVIVANI  237 (300)
T ss_pred             c-ccCcccEEEehh
Confidence            2 234688654433

>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed

Probab=98.29  E-value=3.9e-06  Score=76.57  Aligned_cols=59  Identities=25%  Similarity=0.418  Sum_probs=47.7

Q ss_pred             CCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCC-CcEEEEec
Q 019802          239 PKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGA-ANIEVLHG  299 (335)
Q Consensus       239 ~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~-~ni~~~~~  299 (335)
                      ..++.+|||+|||+|..+..++.. + ..+|+++|+|+.+++.+++|++..++ .++.+..+
T Consensus       117 ~~~~~~VLDiGcGsG~l~i~~~~~-g-~~~v~giDis~~~l~~A~~n~~~~~~~~~~~~~~~  176 (250)
T PRK00517        117 VLPGKTVLDVGCGSGILAIAAAKL-G-AKKVLAVDIDPQAVEAARENAELNGVELNVYLPQG  176 (250)
T ss_pred             cCCCCEEEEeCCcHHHHHHHHHHc-C-CCeEEEEECCHHHHHHHHHHHHHcCCCceEEEccC
Confidence            467999999999999988876654 3 34799999999999999999999887 33444433

>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)

Probab=98.29  E-value=3.3e-06  Score=64.14  Aligned_cols=77  Identities=22%  Similarity=0.279  Sum_probs=62.1

Q ss_pred             EEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCC-CCCCCceEEEEEEecc
Q 019802          244 KVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDP-KDPAYSEVSLIFCIFT  322 (335)
Q Consensus       244 ~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~~-~~~~fd~V~~IllD~~  322 (335)
                      +|+|+|||+|..+..++.  .+..+++++|+++..+..+++.....+..++.++..|+.+... ...   .++.|+++++
T Consensus         1 ~ildig~G~G~~~~~~~~--~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~d~i~~~~~   75 (107)
T cd02440           1 RVLDLGCGTGALALALAS--GPGARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELPPEADE---SFDVIISDPP   75 (107)
T ss_pred             CeEEEcCCccHHHHHHhc--CCCCEEEEEeCCHHHHHHHHHHHhcccccceEEEEcChhhhccccCC---ceEEEEEccc
Confidence            489999999999998887  3467999999999999999876655566779999999988764 223   4556899888


Q ss_pred             ccc
Q 019802          323 WMI  325 (335)
Q Consensus       323 cs~  325 (335)
                      |..
T Consensus        76 ~~~   78 (107)
T cd02440          76 LHH   78 (107)
T ss_pred             eee
Confidence            865

There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).

>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences

Probab=98.26  E-value=3.5e-06  Score=78.50  Aligned_cols=84  Identities=23%  Similarity=0.321  Sum_probs=58.8

Q ss_pred             chHHHHHHHcC--CCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCC
Q 019802          228 KASSMVAAALA--PKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLD  305 (335)
Q Consensus       228 ~~s~l~~~~l~--~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~  305 (335)
                      +..+++..++.  ..+|.+|||+|||+|-.+...+.+  +..+|+|+|+++..++.+++|++..|+.+ .+......+..
T Consensus       146 ~TT~lcl~~l~~~~~~g~~vLDvG~GSGILaiaA~kl--GA~~v~a~DiDp~Av~~a~~N~~~N~~~~-~~~v~~~~~~~  222 (295)
T PF06325_consen  146 PTTRLCLELLEKYVKPGKRVLDVGCGSGILAIAAAKL--GAKKVVAIDIDPLAVEAARENAELNGVED-RIEVSLSEDLV  222 (295)
T ss_dssp             HHHHHHHHHHHHHSSTTSEEEEES-TTSHHHHHHHHT--TBSEEEEEESSCHHHHHHHHHHHHTT-TT-CEEESCTSCTC
T ss_pred             HHHHHHHHHHHHhccCCCEEEEeCCcHHHHHHHHHHc--CCCeEEEecCCHHHHHHHHHHHHHcCCCe-eEEEEEecccc
Confidence            44555555543  567899999999999999887776  45799999999999999999999999976 33222222222


Q ss_pred             CCCCCCceEEE
Q 019802          306 PKDPAYSEVSL  316 (335)
Q Consensus       306 ~~~~~fd~V~~  316 (335)
                        ...||.|.+
T Consensus       223 --~~~~dlvvA  231 (295)
T PF06325_consen  223 --EGKFDLVVA  231 (295)
T ss_dssp             --CS-EEEEEE
T ss_pred             --cccCCEEEE
Confidence              255776444

Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....

>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase

Probab=98.26  E-value=2.4e-06  Score=82.23  Aligned_cols=80  Identities=23%  Similarity=0.263  Sum_probs=67.8

Q ss_pred             CEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCC-CCCCceEEEEEEec
Q 019802          243 WKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPK-DPAYSEVSLIFCIF  321 (335)
Q Consensus       243 ~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~~~-~~~fd~V~~IllD~  321 (335)
                      -+|||++||+|..++.++...++..+|+++|+++..++.+++|++..++.++++++.|+..+... ...||   .|++||
T Consensus        46 ~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~~~~~v~~~Da~~~l~~~~~~fD---vIdlDP  122 (374)
T TIGR00308        46 INIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSVENIEVPNEDAANVLRYRNRKFH---VIDIDP  122 (374)
T ss_pred             CEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEchhHHHHHHHhCCCCC---EEEeCC
Confidence            48999999999999999987544568999999999999999999999998899999999876432 23576   488999


Q ss_pred             cccc
Q 019802          322 TWMI  325 (335)
Q Consensus       322 ~cs~  325 (335)
                      +-|.
T Consensus       123 fGs~  126 (374)
T TIGR00308       123 FGTP  126 (374)
T ss_pred             CCCc
Confidence            8553

This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.

>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]

Probab=98.24  E-value=2.2e-06  Score=75.00  Aligned_cols=76  Identities=17%  Similarity=0.244  Sum_probs=61.6

Q ss_pred             cCchHHHHHHHcCCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCC
Q 019802          226 QGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLD  305 (335)
Q Consensus       226 Qd~~s~l~~~~l~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~  305 (335)
                      +.++--++++ +.+.+-.+|.|+|||||..|..|+++.+ ...|+++|.|+.|++.+++++     .|+++..+|..++.
T Consensus        16 tRPa~dLla~-Vp~~~~~~v~DLGCGpGnsTelL~~RwP-~A~i~GiDsS~~Mla~Aa~rl-----p~~~f~~aDl~~w~   88 (257)
T COG4106          16 TRPARDLLAR-VPLERPRRVVDLGCGPGNSTELLARRWP-DAVITGIDSSPAMLAKAAQRL-----PDATFEEADLRTWK   88 (257)
T ss_pred             cCcHHHHHhh-CCccccceeeecCCCCCHHHHHHHHhCC-CCeEeeccCCHHHHHHHHHhC-----CCCceecccHhhcC
Confidence            3445455554 3456778999999999999999999975 589999999999999986653     47899999999988


Q ss_pred             CCC
Q 019802          306 PKD  308 (335)
Q Consensus       306 ~~~  308 (335)
                      ++.
T Consensus        89 p~~   91 (257)
T COG4106          89 PEQ   91 (257)
T ss_pred             CCC
Confidence            753

>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]

Probab=98.23  E-value=1.8e-06  Score=84.25  Aligned_cols=92  Identities=15%  Similarity=0.238  Sum_probs=75.2

Q ss_pred             HHHHHcCCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCC--CC
Q 019802          232 MVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPK--DP  309 (335)
Q Consensus       232 l~~~~l~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~~~--~~  309 (335)
                      .+.+.++..++..++|+|||+|..+..+|..   -.+|+++++++..++-++.|++..|++|.+++++-++++-+.  ..
T Consensus       374 ~i~e~~~l~~~k~llDv~CGTG~iglala~~---~~~ViGvEi~~~aV~dA~~nA~~NgisNa~Fi~gqaE~~~~sl~~~  450 (534)
T KOG2187|consen  374 TIGEWAGLPADKTLLDVCCGTGTIGLALARG---VKRVIGVEISPDAVEDAEKNAQINGISNATFIVGQAEDLFPSLLTP  450 (534)
T ss_pred             HHHHHhCCCCCcEEEEEeecCCceehhhhcc---ccceeeeecChhhcchhhhcchhcCccceeeeecchhhccchhccc
Confidence            3445677888999999999999999999876   468999999999999999999999999999999977776543  23


Q ss_pred             CCceEE-EEEEecccccc
Q 019802          310 AYSEVS-LIFCIFTWMII  326 (335)
Q Consensus       310 ~fd~V~-~IllD~~cs~~  326 (335)
                      .+|.=+ ++++|||-.|.
T Consensus       451 ~~~~~~~v~iiDPpR~Gl  468 (534)
T KOG2187|consen  451 CCDSETLVAIIDPPRKGL  468 (534)
T ss_pred             CCCCCceEEEECCCcccc
Confidence            344334 68889998543

>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family

Probab=98.23  E-value=6.3e-06  Score=73.40  Aligned_cols=71  Identities=21%  Similarity=0.237  Sum_probs=54.4

Q ss_pred             CCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHH------------HhCCCcEEEEeccCCCCCCC
Q 019802          240 KPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIK------------LSGAANIEVLHGDFLNLDPK  307 (335)
Q Consensus       240 ~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~------------~~g~~ni~~~~~D~~~~~~~  307 (335)
                      .++.+|||+|||.|.-+..||++   ...|+|+|+|+..++.+.+...            +..-.+|++.++|+.+++..
T Consensus        33 ~~~~rvLd~GCG~G~da~~LA~~---G~~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~  109 (213)
T TIGR03840        33 PAGARVFVPLCGKSLDLAWLAEQ---GHRVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTAA  109 (213)
T ss_pred             CCCCeEEEeCCCchhHHHHHHhC---CCeEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCCCcc
Confidence            57889999999999999999976   4689999999999997633211            01113588999999998753


Q ss_pred             -CCCCce
Q 019802          308 -DPAYSE  313 (335)
Q Consensus       308 -~~~fd~  313 (335)
                       ...||.
T Consensus       110 ~~~~fD~  116 (213)
T TIGR03840       110 DLGPVDA  116 (213)
T ss_pred             cCCCcCE
Confidence             345774

Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.

>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes

Probab=98.22  E-value=6.8e-06  Score=73.41  Aligned_cols=71  Identities=18%  Similarity=0.173  Sum_probs=59.7

Q ss_pred             CEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCC-cEEEEeccCCCCCCCCCCCceEE
Q 019802          243 WKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAA-NIEVLHGDFLNLDPKDPAYSEVS  315 (335)
Q Consensus       243 ~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~-ni~~~~~D~~~~~~~~~~fd~V~  315 (335)
                      .+|||+|||+|+.+..+++..+ ..+|+++|+|+.+++.++++++..|+. ++.++..|+...+.. .+||.|.
T Consensus         1 ~~vLDiGcG~G~~~~~la~~~~-~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~~~~-~~fD~I~   72 (224)
T smart00828        1 KRVLDFGCGYGSDLIDLAERHP-HLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKDPFP-DTYDLVF   72 (224)
T ss_pred             CeEEEECCCCCHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccCCCC-CCCCEee
Confidence            3799999999999999998863 479999999999999999999998874 589999999766443 4688653

>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU

Probab=98.18  E-value=1.8e-05  Score=74.37  Aligned_cols=80  Identities=9%  Similarity=0.047  Sum_probs=66.0

Q ss_pred             HHHHHHHcCCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCC-cEEEEeccCCCCCCCC
Q 019802          230 SSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAA-NIEVLHGDFLNLDPKD  308 (335)
Q Consensus       230 s~l~~~~l~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~-ni~~~~~D~~~~~~~~  308 (335)
                      ...+...++..++.+|||+|||+|..+..+++.. ++.+++++|. +.+++.+++++++.|+. +|+++.+|+.+.+.+ 
T Consensus       138 ~~~l~~~~~~~~~~~vlDiG~G~G~~~~~~~~~~-p~~~~~~~D~-~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~~~~-  214 (306)
T TIGR02716       138 IQLLLEEAKLDGVKKMIDVGGGIGDISAAMLKHF-PELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKESYP-  214 (306)
T ss_pred             HHHHHHHcCCCCCCEEEEeCCchhHHHHHHHHHC-CCCEEEEEec-HHHHHHHHHHHHhCCccceEEEEecCccCCCCC-
Confidence            4455566778889999999999999999999986 4589999997 78999999999999985 599999999765433 


Q ss_pred             CCCce
Q 019802          309 PAYSE  313 (335)
Q Consensus       309 ~~fd~  313 (335)
                       .+|.
T Consensus       215 -~~D~  218 (306)
T TIGR02716       215 -EADA  218 (306)
T ss_pred             -CCCE
Confidence             2554

Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.

>PLN02336 phosphoethanolamine N-methyltransferase

Probab=98.17  E-value=9.3e-06  Score=80.91  Aligned_cols=87  Identities=20%  Similarity=0.274  Sum_probs=64.1

Q ss_pred             chHHHHHHHcCCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCC--CC
Q 019802          228 KASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLN--LD  305 (335)
Q Consensus       228 ~~s~l~~~~l~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~--~~  305 (335)
                      .....+...+.+.++.+|||+|||+|..+..+++.   ..+|+++|+++.+++..++...  ...++.++++|+..  ++
T Consensus        24 ~~~~~il~~l~~~~~~~vLDlGcG~G~~~~~la~~---~~~v~giD~s~~~l~~a~~~~~--~~~~i~~~~~d~~~~~~~   98 (475)
T PLN02336         24 EERPEILSLLPPYEGKSVLELGAGIGRFTGELAKK---AGQVIALDFIESVIKKNESING--HYKNVKFMCADVTSPDLN   98 (475)
T ss_pred             hhhhHHHhhcCccCCCEEEEeCCCcCHHHHHHHhh---CCEEEEEeCCHHHHHHHHHHhc--cCCceEEEEecccccccC
Confidence            33445556677778889999999999999999987   3589999999999987654221  24679999999964  44


Q ss_pred             CCCCCCceEEEEEEecc
Q 019802          306 PKDPAYSEVSLIFCIFT  322 (335)
Q Consensus       306 ~~~~~fd~V~~IllD~~  322 (335)
                      ..+++||.   |++..+
T Consensus        99 ~~~~~fD~---I~~~~~  112 (475)
T PLN02336         99 ISDGSVDL---IFSNWL  112 (475)
T ss_pred             CCCCCEEE---Eehhhh
Confidence            44556764   555543

>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=98.16  E-value=5.4e-07  Score=69.85  Aligned_cols=71  Identities=18%  Similarity=0.219  Sum_probs=47.3

Q ss_pred             EEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCC--CCCCceEEEE
Q 019802          246 LDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPK--DPAYSEVSLI  317 (335)
Q Consensus       246 LD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~~~--~~~fd~V~~I  317 (335)
                      ||+|||+|..+..+++.. +..+++++|+|+.+++.+++++...+..+......+..+....  ..+||.|.++
T Consensus         1 LdiGcG~G~~~~~l~~~~-~~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~V~~~   73 (99)
T PF08242_consen    1 LDIGCGTGRLLRALLEEL-PDARYTGVDISPSMLERARERLAELGNDNFERLRFDVLDLFDYDPPESFDLVVAS   73 (99)
T ss_dssp             -EESTTTS-TTTTHHHHC--EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE--SSS---CCC----SEEEEE
T ss_pred             CEeCccChHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeecCChhhcccccccceehhh
Confidence            799999999999999986 5789999999999999999999998876666666555554322  2478875443

The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.

>PRK11727 23S rRNA mA1618 methyltransferase; Provisional

Probab=98.15  E-value=1.3e-05  Score=75.51  Aligned_cols=83  Identities=12%  Similarity=0.124  Sum_probs=63.4

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHh-CCC-cEEEEe-ccCCCCCC----CCCCCce
Q 019802          241 PGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLS-GAA-NIEVLH-GDFLNLDP----KDPAYSE  313 (335)
Q Consensus       241 ~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~-g~~-ni~~~~-~D~~~~~~----~~~~fd~  313 (335)
                      ++.+|||+|||+|+....++.... ..+++|+|+++..++.+++|++.. ++. .|.+.. .|...+..    ....|  
T Consensus       114 ~~~~vLDIGtGag~I~~lLa~~~~-~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~~~i~~~i~~~~~~f--  190 (321)
T PRK11727        114 ANVRVLDIGVGANCIYPLIGVHEY-GWRFVGSDIDPQALASAQAIISANPGLNGAIRLRLQKDSKAIFKGIIHKNERF--  190 (321)
T ss_pred             CCceEEEecCCccHHHHHHHhhCC-CCEEEEEeCCHHHHHHHHHHHHhccCCcCcEEEEEccchhhhhhcccccCCce--
Confidence            567999999999999999988754 579999999999999999999998 775 477753 34333321    12344  


Q ss_pred             EEEEEEeccccccc
Q 019802          314 VSLIFCIFTWMIIM  327 (335)
Q Consensus       314 V~~IllD~~cs~~g  327 (335)
                       |.|+++||--.++
T Consensus       191 -DlivcNPPf~~s~  203 (321)
T PRK11727        191 -DATLCNPPFHASA  203 (321)
T ss_pred             -EEEEeCCCCcCcc
Confidence             5699999876543

>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2

Probab=98.15  E-value=8.5e-06  Score=76.64  Aligned_cols=106  Identities=23%  Similarity=0.245  Sum_probs=73.7

Q ss_pred             ceEEecCchHHHHHHHcCCCCCCEEEEEcCCCchHHHHHHHHc------CCCeEEEEEeCCHHHHHHHHHHHHHhCCC--
Q 019802          221 GCVFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALM------KGKGKIVACELNKERVRRLKDTIKLSGAA--  292 (335)
Q Consensus       221 g~~~iQd~~s~l~~~~l~~~~g~~VLD~cagpG~kt~~la~~~------~~~g~i~a~D~~~~rl~~~~~~~~~~g~~--  292 (335)
                      |.|+--..-+.+++.++.+.++++|+|-|||+|+....+.+.+      .....|+++|+++..+..++-|+.-.|..  
T Consensus        26 G~~~TP~~i~~l~~~~~~~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~~~  105 (311)
T PF02384_consen   26 GQFYTPREIVDLMVKLLNPKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGIDNS  105 (311)
T ss_dssp             GGC---HHHHHHHHHHHTT-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHHCB
T ss_pred             ceeehHHHHHHHHHhhhhccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhccccc
Confidence            4444445567788889999999999999999999999888754      24579999999999999999988766653  


Q ss_pred             cEEEEeccCCCCCCCCCCCceEEEEEEeccccccc
Q 019802          293 NIEVLHGDFLNLDPKDPAYSEVSLIFCIFTWMIIM  327 (335)
Q Consensus       293 ni~~~~~D~~~~~~~~~~fd~V~~IllD~~cs~~g  327 (335)
                      +..+.++|....+... ....++.|+.+||.+..+
T Consensus       106 ~~~i~~~d~l~~~~~~-~~~~~D~ii~NPPf~~~~  139 (311)
T PF02384_consen  106 NINIIQGDSLENDKFI-KNQKFDVIIGNPPFGSKE  139 (311)
T ss_dssp             GCEEEES-TTTSHSCT-ST--EEEEEEE--CTCES
T ss_pred             cccccccccccccccc-cccccccccCCCCccccc
Confidence            3468888876654322 123556799999998773

1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.

>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]

Probab=98.14  E-value=6.8e-06  Score=73.68  Aligned_cols=77  Identities=22%  Similarity=0.219  Sum_probs=66.2

Q ss_pred             CEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCC---CCCCCceEEEEEE
Q 019802          243 WKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDP---KDPAYSEVSLIFC  319 (335)
Q Consensus       243 ~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~~---~~~~fd~V~~Ill  319 (335)
                      ..+||+|||.|....++|.. +++..++++|++...+..+.+.+.+.|++|+.++++||..+-.   .+++.|   .|.+
T Consensus        50 pi~lEIGfG~G~~l~~~A~~-nP~~nfiGiEi~~~~v~~~l~k~~~~~l~Nlri~~~DA~~~l~~~~~~~sl~---~I~i  125 (227)
T COG0220          50 PIVLEIGFGMGEFLVEMAKK-NPEKNFLGIEIRVPGVAKALKKIKELGLKNLRLLCGDAVEVLDYLIPDGSLD---KIYI  125 (227)
T ss_pred             cEEEEECCCCCHHHHHHHHH-CCCCCEEEEEEehHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHhcCCCCCee---EEEE
Confidence            58999999999999999998 5678999999999999999999999999999999999987553   333555   4777


Q ss_pred             eccc
Q 019802          320 IFTW  323 (335)
Q Consensus       320 D~~c  323 (335)
                      .||+
T Consensus       126 ~FPD  129 (227)
T COG0220         126 NFPD  129 (227)
T ss_pred             ECCC
Confidence            7664

>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=98.14  E-value=4.8e-06  Score=72.95  Aligned_cols=80  Identities=24%  Similarity=0.241  Sum_probs=62.5

Q ss_pred             CCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCC-----CCCCce
Q 019802          239 PKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPK-----DPAYSE  313 (335)
Q Consensus       239 ~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~~~-----~~~fd~  313 (335)
                      .++|..|+|+||+|||.+-.++..++.+++|+|+|+.+-..           +.+|.++++|++.-+..     .-....
T Consensus        43 ~~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~~-----------~~~V~~iq~d~~~~~~~~~l~~~l~~~~  111 (205)
T COG0293          43 FKPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMKP-----------IPGVIFLQGDITDEDTLEKLLEALGGAP  111 (205)
T ss_pred             ecCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECccccc-----------CCCceEEeeeccCccHHHHHHHHcCCCC
Confidence            46799999999999999999999999889999999987642           45799999999886631     112223


Q ss_pred             EEEEEEeccccccccc
Q 019802          314 VSLIFCIFTWMIIMFH  329 (335)
Q Consensus       314 V~~IllD~~cs~~g~~  329 (335)
                      ++.|+.|+----+|.+
T Consensus       112 ~DvV~sD~ap~~~g~~  127 (205)
T COG0293         112 VDVVLSDMAPNTSGNR  127 (205)
T ss_pred             cceEEecCCCCcCCCc
Confidence            6779999766666654

>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]

Probab=98.14  E-value=8.1e-06  Score=71.63  Aligned_cols=88  Identities=14%  Similarity=0.115  Sum_probs=66.7

Q ss_pred             eEEecCchHHHHHHHcCCCC--CCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEec
Q 019802          222 CVFLQGKASSMVAAALAPKP--GWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHG  299 (335)
Q Consensus       222 ~~~iQd~~s~l~~~~l~~~~--g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~  299 (335)
                      ...||-+-+.-..++++.+.  +.-|||+|||+|-.+..+.+-   ....+++|+|+.||+.+.+.  ++.   -.++.+
T Consensus        29 i~~IQ~em~eRaLELLalp~~~~~~iLDIGCGsGLSg~vL~~~---Gh~wiGvDiSpsML~~a~~~--e~e---gdlil~  100 (270)
T KOG1541|consen   29 IVLIQAEMAERALELLALPGPKSGLILDIGCGSGLSGSVLSDS---GHQWIGVDISPSMLEQAVER--ELE---GDLILC  100 (270)
T ss_pred             eeeehHHHHHHHHHHhhCCCCCCcEEEEeccCCCcchheeccC---CceEEeecCCHHHHHHHHHh--hhh---cCeeee
Confidence            35678777777777777666  678999999999999877653   36889999999999999873  222   135666


Q ss_pred             cCCC-CCCCCCCCceEEEE
Q 019802          300 DFLN-LDPKDPAYSEVSLI  317 (335)
Q Consensus       300 D~~~-~~~~~~~fd~V~~I  317 (335)
                      |..+ +|+...+||.|..|
T Consensus       101 DMG~GlpfrpGtFDg~ISI  119 (270)
T KOG1541|consen  101 DMGEGLPFRPGTFDGVISI  119 (270)
T ss_pred             ecCCCCCCCCCccceEEEe
Confidence            6644 77788899987554

>PRK04457 spermidine synthase; Provisional

Probab=98.14  E-value=9.5e-06  Score=74.61  Aligned_cols=80  Identities=13%  Similarity=0.115  Sum_probs=64.0

Q ss_pred             CCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCC-CcEEEEeccCCCCCC-CCCCCceEEE
Q 019802          239 PKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGA-ANIEVLHGDFLNLDP-KDPAYSEVSL  316 (335)
Q Consensus       239 ~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~-~ni~~~~~D~~~~~~-~~~~fd~V~~  316 (335)
                      ..++.+|||+|+|.|..+..++... +..+|+++|+++..++.+++++...+. ++++++++|+.++-. ...+||   .
T Consensus        64 ~~~~~~vL~IG~G~G~l~~~l~~~~-p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~~~~yD---~  139 (262)
T PRK04457         64 NPRPQHILQIGLGGGSLAKFIYTYL-PDTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAVHRHSTD---V  139 (262)
T ss_pred             CCCCCEEEEECCCHhHHHHHHHHhC-CCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHhCCCCCC---E
Confidence            3456789999999999999999886 468999999999999999999865443 679999999976432 224576   4


Q ss_pred             EEEecc
Q 019802          317 IFCIFT  322 (335)
Q Consensus       317 IllD~~  322 (335)
                      |++|..
T Consensus       140 I~~D~~  145 (262)
T PRK04457        140 ILVDGF  145 (262)
T ss_pred             EEEeCC
Confidence            888964

>KOG1271 consensus Methyltransferases [General function prediction only]

Probab=98.13  E-value=7.3e-06  Score=69.88  Aligned_cols=69  Identities=19%  Similarity=0.195  Sum_probs=61.6

Q ss_pred             CEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCc-EEEEeccCCCCCCCCCCCc
Q 019802          243 WKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAAN-IEVLHGDFLNLDPKDPAYS  312 (335)
Q Consensus       243 ~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~n-i~~~~~D~~~~~~~~~~fd  312 (335)
                      ++|||+|||.|..-..|++.- =.+.++++|.|++.+++++..+++-|++| |++.+.|..+..+....||
T Consensus        69 ~~VlDLGtGNG~~L~~L~~eg-f~~~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~DI~~~~~~~~qfd  138 (227)
T KOG1271|consen   69 DRVLDLGTGNGHLLFQLAKEG-FQSKLTGVDYSEKAVELAQNIAERDGFSNEIRFQQLDITDPDFLSGQFD  138 (227)
T ss_pred             cceeeccCCchHHHHHHHHhc-CCCCccccccCHHHHHHHHHHHHhcCCCcceeEEEeeccCCccccccee
Confidence            399999999999999998762 34679999999999999999999999988 9999999999877777788

>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins

Probab=98.12  E-value=6.1e-06  Score=71.63  Aligned_cols=85  Identities=16%  Similarity=0.249  Sum_probs=61.1

Q ss_pred             EEecCchHHHHHHHcCCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCC
Q 019802          223 VFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFL  302 (335)
Q Consensus       223 ~~iQd~~s~l~~~~l~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~  302 (335)
                      +|-|.+-.+++...|....-.++||+|||.|..|.+||.+.   .+++++|+++..++.+++++..  .++|++.+.|..
T Consensus        25 ~YE~~K~~~~l~aaLp~~ry~~alEvGCs~G~lT~~LA~rC---d~LlavDis~~Al~~Ar~Rl~~--~~~V~~~~~dvp   99 (201)
T PF05401_consen   25 WYERRKYRATLLAALPRRRYRRALEVGCSIGVLTERLAPRC---DRLLAVDISPRALARARERLAG--LPHVEWIQADVP   99 (201)
T ss_dssp             HHHHHHHHHHHHHHHTTSSEEEEEEE--TTSHHHHHHGGGE---EEEEEEES-HHHHHHHHHHTTT---SSEEEEES-TT
T ss_pred             HHHHHHHHHHHHHhcCccccceeEecCCCccHHHHHHHHhh---CceEEEeCCHHHHHHHHHhcCC--CCCeEEEECcCC
Confidence            34455544555445666667789999999999999999883   6899999999999999999984  468999999998


Q ss_pred             CCCCCCCCCce
Q 019802          303 NLDPKDPAYSE  313 (335)
Q Consensus       303 ~~~~~~~~fd~  313 (335)
                      +..| ...||.
T Consensus       100 ~~~P-~~~FDL  109 (201)
T PF05401_consen  100 EFWP-EGRFDL  109 (201)
T ss_dssp             T----SS-EEE
T ss_pred             CCCC-CCCeeE
Confidence            8654 456886

The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.

>PLN02672 methionine S-methyltransferase

Probab=98.12  E-value=1.1e-05  Score=86.58  Aligned_cols=82  Identities=13%  Similarity=0.119  Sum_probs=66.0

Q ss_pred             CCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCC----------------CcEEEEeccCCCCC
Q 019802          242 GWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGA----------------ANIEVLHGDFLNLD  305 (335)
Q Consensus       242 g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~----------------~ni~~~~~D~~~~~  305 (335)
                      +.+|||+|||+|..+..++...+ .++|+|+|+|+..++.+++|+++.++                .+|+++++|..+..
T Consensus       119 ~~~VLDlG~GSG~Iai~La~~~~-~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~  197 (1082)
T PLN02672        119 DKTVAELGCGNGWISIAIAEKWL-PSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYC  197 (1082)
T ss_pred             CCEEEEEecchHHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhhhc
Confidence            46899999999999999998864 47999999999999999999998653                36999999987654


Q ss_pred             CC-CCCCceEEEEEEeccccccc
Q 019802          306 PK-DPAYSEVSLIFCIFTWMIIM  327 (335)
Q Consensus       306 ~~-~~~fd~V~~IllD~~cs~~g  327 (335)
                      .. ...|   |.|+.+||.-..+
T Consensus       198 ~~~~~~f---DlIVSNPPYI~~~  217 (1082)
T PLN02672        198 RDNNIEL---DRIVGCIPQILNP  217 (1082)
T ss_pred             cccCCce---EEEEECCCcCCCc
Confidence            22 1235   4688899976544

>TIGR00452 methyltransferase, putative

Probab=98.11  E-value=2e-05  Score=74.21  Aligned_cols=78  Identities=17%  Similarity=0.144  Sum_probs=58.3

Q ss_pred             HcCCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhC-CCcEEEEeccCCCCCCCCCCCceE
Q 019802          236 ALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSG-AANIEVLHGDFLNLDPKDPAYSEV  314 (335)
Q Consensus       236 ~l~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g-~~ni~~~~~D~~~~~~~~~~fd~V  314 (335)
                      .+++.+|.+|||+|||+|..+..++..  +...|+++|+|+.++..++..-+..+ ..++.+...|+.++++. ..||.|
T Consensus       116 ~l~~~~g~~VLDvGCG~G~~~~~~~~~--g~~~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~lp~~-~~FD~V  192 (314)
T TIGR00452       116 HLSPLKGRTILDVGCGSGYHMWRMLGH--GAKSLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQLHEL-YAFDTV  192 (314)
T ss_pred             hcCCCCCCEEEEeccCCcHHHHHHHHc--CCCEEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHHHCCCC-CCcCEE
Confidence            456788999999999999999888765  23589999999999877544333322 24578888998888754 368875


Q ss_pred             EE
Q 019802          315 SL  316 (335)
Q Consensus       315 ~~  316 (335)
                      .+
T Consensus       193 ~s  194 (314)
T TIGR00452       193 FS  194 (314)
T ss_pred             EE
Confidence            43

Known examples to date are restricted to the proteobacteria.

>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]

Probab=98.08  E-value=3e-05  Score=73.90  Aligned_cols=106  Identities=17%  Similarity=0.260  Sum_probs=81.1

Q ss_pred             cccccceEEecCch------HHHHHHHcCCCCCCEEEEEcCCCchHHHHHHHHcCC------------------------
Q 019802          216 PLIVNGCVFLQGKA------SSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKG------------------------  265 (335)
Q Consensus       216 ~~~~~g~~~iQd~~------s~l~~~~l~~~~g~~VLD~cagpG~kt~~la~~~~~------------------------  265 (335)
                      ++++.|+-.-+-.+      +.-+..+.+.++++.++|--||+|...+..|.+..+                        
T Consensus       160 sLhkRGyR~~~g~ApLketLAaAil~lagw~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~  239 (381)
T COG0116         160 SLHKRGYRVYDGPAPLKETLAAAILLLAGWKPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDK  239 (381)
T ss_pred             chhhccccccCCCCCchHHHHHHHHHHcCCCCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHH
Confidence            45555655444443      333445667888999999999999999988866432                        


Q ss_pred             -------Ce-------EEEEEeCCHHHHHHHHHHHHHhCCCc-EEEEeccCCCCCCCCCCCceEEEEEEecccc
Q 019802          266 -------KG-------KIVACELNKERVRRLKDTIKLSGAAN-IEVLHGDFLNLDPKDPAYSEVSLIFCIFTWM  324 (335)
Q Consensus       266 -------~g-------~i~a~D~~~~rl~~~~~~~~~~g~~n-i~~~~~D~~~~~~~~~~fd~V~~IllD~~cs  324 (335)
                             .+       .++++|+++.+++.++.|+++.|+.. |++.++|+..+......++   .|+++||.-
T Consensus       240 ~~~ea~~~a~~~~~~~~~~G~Did~r~i~~Ak~NA~~AGv~d~I~f~~~d~~~l~~~~~~~g---vvI~NPPYG  310 (381)
T COG0116         240 LREEAEERARRGKELPIIYGSDIDPRHIEGAKANARAAGVGDLIEFKQADATDLKEPLEEYG---VVISNPPYG  310 (381)
T ss_pred             HHHHHHHHHhhcCccceEEEecCCHHHHHHHHHHHHhcCCCceEEEEEcchhhCCCCCCcCC---EEEeCCCcc
Confidence                   11       47899999999999999999999965 9999999999887643454   599999963

>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional

Probab=98.08  E-value=2.3e-05  Score=70.39  Aligned_cols=80  Identities=16%  Similarity=0.163  Sum_probs=64.2

Q ss_pred             HHHHHHcCCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCC-CCC
Q 019802          231 SMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDP-KDP  309 (335)
Q Consensus       231 ~l~~~~l~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~~-~~~  309 (335)
                      .++...+.+.++.+|||+|||+|..+..++..   ..+++++|+++.+++.+++++...+. ++.+...|+..++. ...
T Consensus        38 ~~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~---~~~v~~iD~s~~~~~~a~~~~~~~~~-~~~~~~~~~~~~~~~~~~  113 (233)
T PRK05134         38 NYIREHAGGLFGKRVLDVGCGGGILSESMARL---GADVTGIDASEENIEVARLHALESGL-KIDYRQTTAEELAAEHPG  113 (233)
T ss_pred             HHHHHhccCCCCCeEEEeCCCCCHHHHHHHHc---CCeEEEEcCCHHHHHHHHHHHHHcCC-ceEEEecCHHHhhhhcCC
Confidence            45555566678999999999999999988875   35799999999999999999988777 57888888877652 335


Q ss_pred             CCceE
Q 019802          310 AYSEV  314 (335)
Q Consensus       310 ~fd~V  314 (335)
                      .||.|
T Consensus       114 ~fD~I  118 (233)
T PRK05134        114 QFDVV  118 (233)
T ss_pred             CccEE
Confidence            67764

>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=98.06  E-value=5.4e-05  Score=66.07  Aligned_cols=119  Identities=18%  Similarity=0.146  Sum_probs=83.4

Q ss_pred             ccCCCCCeEEeCCCCCCCCCcccccceEEecCchH-HHHHHHcC--CCCCCEEEEEcCCCchHHHHHHHHcCCCeEE-EE
Q 019802          196 KDDLVPDLLILPPGCDLHVHPLIVNGCVFLQGKAS-SMVAAALA--PKPGWKVLDACSAPGNKTVHLAALMKGKGKI-VA  271 (335)
Q Consensus       196 ~~~~~~~~l~~~~~~~~~~~~~~~~g~~~iQd~~s-~l~~~~l~--~~~g~~VLD~cagpG~kt~~la~~~~~~g~i-~a  271 (335)
                      +..++|..++-.   +....|.+..+-..+--+.- ..+.+.|+  .+||...||+|+|+|..|..++.+++..|.+ ++
T Consensus        37 R~dy~p~~~~~n---~y~d~pq~~G~n~~iSAp~mha~~le~L~~~L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~G  113 (237)
T KOG1661|consen   37 RSDYAPRSERTN---PYMDSPQKIGYNLTISAPHMHATALEYLDDHLQPGASFLDVGSGSGYLTACFARMVGATGGNVHG  113 (237)
T ss_pred             hhhccccccccC---CCCCCccccCCceEEcchHHHHHHHHHHHHhhccCcceeecCCCccHHHHHHHHHhcCCCccccc
Confidence            344455544422   22334444443444432221 12234555  7899999999999999999999888877765 99


Q ss_pred             EeCCHHHHHHHHHHHHHhC----------CCcEEEEeccCCCCCCCCCCCceEEEEEEe
Q 019802          272 CELNKERVRRLKDTIKLSG----------AANIEVLHGDFLNLDPKDPAYSEVSLIFCI  320 (335)
Q Consensus       272 ~D~~~~rl~~~~~~~~~~g----------~~ni~~~~~D~~~~~~~~~~fd~V~~IllD  320 (335)
                      +|..++-++..++|+...-          ..++.++.+|....-++...||+   |.|=
T Consensus       114 IEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivvGDgr~g~~e~a~YDa---IhvG  169 (237)
T KOG1661|consen  114 IEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVVGDGRKGYAEQAPYDA---IHVG  169 (237)
T ss_pred             hhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEEeCCccccCCccCCcce---EEEc
Confidence            9999999999999987643          23578899999999888888987   5554

>smart00138 MeTrc Methyltransferase, chemotaxis proteins

Probab=98.05  E-value=1.6e-05  Score=73.16  Aligned_cols=77  Identities=13%  Similarity=0.158  Sum_probs=57.0

Q ss_pred             CCCCEEEEEcCCCch----HHHHHHHHcCC----CeEEEEEeCCHHHHHHHHHHHH------HhC---------------
Q 019802          240 KPGWKVLDACSAPGN----KTVHLAALMKG----KGKIVACELNKERVRRLKDTIK------LSG---------------  290 (335)
Q Consensus       240 ~~g~~VLD~cagpG~----kt~~la~~~~~----~g~i~a~D~~~~rl~~~~~~~~------~~g---------------  290 (335)
                      .++.+|||+|||+|.    .+..+++.+..    +.+|+|+|+|+.+++.+++..-      ...               
T Consensus        98 ~~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~  177 (264)
T smart00138       98 GRRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKY  177 (264)
T ss_pred             CCCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeE
Confidence            346799999999996    45556665432    5799999999999999988531      100               


Q ss_pred             -----C-CcEEEEeccCCCCCCCCCCCceEEE
Q 019802          291 -----A-ANIEVLHGDFLNLDPKDPAYSEVSL  316 (335)
Q Consensus       291 -----~-~ni~~~~~D~~~~~~~~~~fd~V~~  316 (335)
                           + .+|.+.++|+.+.++..+.||.|.+
T Consensus       178 ~v~~~ir~~V~F~~~dl~~~~~~~~~fD~I~c  209 (264)
T smart00138      178 RVKPELKERVRFAKHNLLAESPPLGDFDLIFC  209 (264)
T ss_pred             EEChHHhCcCEEeeccCCCCCCccCCCCEEEe
Confidence                 1 2589999999998776778987544

Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.

>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase

Probab=98.05  E-value=2.4e-05  Score=69.77  Aligned_cols=72  Identities=22%  Similarity=0.207  Sum_probs=59.8

Q ss_pred             CCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCC-CCCCceE
Q 019802          240 KPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPK-DPAYSEV  314 (335)
Q Consensus       240 ~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~~~-~~~fd~V  314 (335)
                      ..+.+|||+|||+|..+..++..   ...++++|+++.+++.+++++...+..++.+.+.|+.+++.. ..+||.|
T Consensus        44 ~~~~~vLdlG~G~G~~~~~l~~~---~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~i  116 (224)
T TIGR01983        44 LFGLRVLDVGCGGGLLSEPLARL---GANVTGIDASEENIEVAKLHAKKDPLLKIEYRCTSVEDLAEKGAKSFDVV  116 (224)
T ss_pred             CCCCeEEEECCCCCHHHHHHHhc---CCeEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhcCCCCCccEE
Confidence            35789999999999999988775   246999999999999999999988876789999998877644 2567753

This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.

>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins

Probab=98.03  E-value=1.4e-05  Score=69.28  Aligned_cols=67  Identities=25%  Similarity=0.346  Sum_probs=54.5

Q ss_pred             CCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCC-C-CCCCCCCceE
Q 019802          239 PKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLN-L-DPKDPAYSEV  314 (335)
Q Consensus       239 ~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~-~-~~~~~~fd~V  314 (335)
                      .+||.+|||+|||.|..-.+|.+.  .+...+++|+++..+..+.++    |   +.++++|+.+ + .+++++||.|
T Consensus        11 I~pgsrVLDLGCGdG~LL~~L~~~--k~v~g~GvEid~~~v~~cv~r----G---v~Viq~Dld~gL~~f~d~sFD~V   79 (193)
T PF07021_consen   11 IEPGSRVLDLGCGDGELLAYLKDE--KQVDGYGVEIDPDNVAACVAR----G---VSVIQGDLDEGLADFPDQSFDYV   79 (193)
T ss_pred             cCCCCEEEecCCCchHHHHHHHHh--cCCeEEEEecCHHHHHHHHHc----C---CCEEECCHHHhHhhCCCCCccEE
Confidence            467999999999999999999886  357899999999998876655    5   4589999876 3 2578899963

Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].

>PRK13255 thiopurine S-methyltransferase; Reviewed

Probab=98.02  E-value=4e-05  Score=68.53  Aligned_cols=83  Identities=20%  Similarity=0.204  Sum_probs=58.6

Q ss_pred             chHHHHHHH--cCCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHH------------HhCCCc
Q 019802          228 KASSMVAAA--LAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIK------------LSGAAN  293 (335)
Q Consensus       228 ~~s~l~~~~--l~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~------------~~g~~n  293 (335)
                      +...++...  +.+.++.+|||+|||.|.-+.+||++   ...|+|+|+|+..++.+.+...            +....+
T Consensus        22 p~~~L~~~~~~~~~~~~~rvL~~gCG~G~da~~LA~~---G~~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~   98 (218)
T PRK13255         22 VNPLLQKYWPALALPAGSRVLVPLCGKSLDMLWLAEQ---GHEVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGE   98 (218)
T ss_pred             CCHHHHHHHHhhCCCCCCeEEEeCCCChHhHHHHHhC---CCeEEEEccCHHHHHHHHHHcCCCccccccccccccccCc
Confidence            444444432  24457889999999999999999985   4689999999999998642110            111246


Q ss_pred             EEEEeccCCCCCCCC-CCCce
Q 019802          294 IEVLHGDFLNLDPKD-PAYSE  313 (335)
Q Consensus       294 i~~~~~D~~~~~~~~-~~fd~  313 (335)
                      |++.++|+.++++.+ ..||.
T Consensus        99 v~~~~~D~~~l~~~~~~~fd~  119 (218)
T PRK13255         99 ITIYCGDFFALTAADLADVDA  119 (218)
T ss_pred             eEEEECcccCCCcccCCCeeE
Confidence            889999999986543 35663

>COG4076 Predicted RNA methylase [General function prediction only]

Probab=98.01  E-value=5.6e-06  Score=70.83  Aligned_cols=62  Identities=24%  Similarity=0.296  Sum_probs=56.8

Q ss_pred             CCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCC
Q 019802          242 GWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDP  306 (335)
Q Consensus       242 g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~~  306 (335)
                      .+.+.|+|||+|-.+...|+.   .-+|+|++.++.+.+.+++|++--|..|++++++|+.++++
T Consensus        33 ~d~~~DLGaGsGiLs~~Aa~~---A~rViAiE~dPk~a~~a~eN~~v~g~~n~evv~gDA~~y~f   94 (252)
T COG4076          33 EDTFADLGAGSGILSVVAAHA---AERVIAIEKDPKRARLAEENLHVPGDVNWEVVVGDARDYDF   94 (252)
T ss_pred             hhceeeccCCcchHHHHHHhh---hceEEEEecCcHHHHHhhhcCCCCCCcceEEEecccccccc
Confidence            378999999999999888876   35899999999999999999988899999999999999885

>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G

Probab=98.01  E-value=2.3e-05  Score=68.16  Aligned_cols=69  Identities=26%  Similarity=0.306  Sum_probs=57.8

Q ss_pred             EEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCceE
Q 019802          244 KVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEV  314 (335)
Q Consensus       244 ~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~~~~~~fd~V  314 (335)
                      +|+|+|+|.|--+..+|-.. ++.+++.+|...+|+.-+++-...+|++|+++++..+++ ......||.|
T Consensus        51 ~~lDiGSGaGfPGipLaI~~-p~~~~~LvEs~~KK~~FL~~~~~~L~L~nv~v~~~R~E~-~~~~~~fd~v  119 (184)
T PF02527_consen   51 KVLDIGSGAGFPGIPLAIAR-PDLQVTLVESVGKKVAFLKEVVRELGLSNVEVINGRAEE-PEYRESFDVV  119 (184)
T ss_dssp             EEEEETSTTTTTHHHHHHH--TTSEEEEEESSHHHHHHHHHHHHHHT-SSEEEEES-HHH-TTTTT-EEEE
T ss_pred             eEEecCCCCCChhHHHHHhC-CCCcEEEEeCCchHHHHHHHHHHHhCCCCEEEEEeeecc-cccCCCccEE
Confidence            89999999999999998775 568999999999999999999999999999999999998 3334557653

Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.

>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e

Probab=98.01  E-value=3.5e-05  Score=70.84  Aligned_cols=96  Identities=24%  Similarity=0.378  Sum_probs=73.2

Q ss_pred             EEecCchHHHHHHHcCCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCC
Q 019802          223 VFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFL  302 (335)
Q Consensus       223 ~~iQd~~s~l~~~~l~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~  302 (335)
                      |.+-..-...++..+++.+++.|||+|+|+|..|..|++..   .+++++|+++..++.+++.+.  ..+|++++++|+.
T Consensus        12 FL~~~~~~~~Iv~~~~~~~~~~VlEiGpG~G~lT~~L~~~~---~~v~~vE~d~~~~~~L~~~~~--~~~~~~vi~~D~l   86 (262)
T PF00398_consen   12 FLVDPNIADKIVDALDLSEGDTVLEIGPGPGALTRELLKRG---KRVIAVEIDPDLAKHLKERFA--SNPNVEVINGDFL   86 (262)
T ss_dssp             EEEHHHHHHHHHHHHTCGTTSEEEEESSTTSCCHHHHHHHS---SEEEEEESSHHHHHHHHHHCT--TCSSEEEEES-TT
T ss_pred             eeCCHHHHHHHHHhcCCCCCCEEEEeCCCCccchhhHhccc---CcceeecCcHhHHHHHHHHhh--hcccceeeecchh
Confidence            33333345666778888899999999999999999999884   689999999999999999877  4568999999999


Q ss_pred             CCCCCCCCCceEEEEEEeccc
Q 019802          303 NLDPKDPAYSEVSLIFCIFTW  323 (335)
Q Consensus       303 ~~~~~~~~fd~V~~IllD~~c  323 (335)
                      +++....--+.-..|+-+.|-
T Consensus        87 ~~~~~~~~~~~~~~vv~NlPy  107 (262)
T PF00398_consen   87 KWDLYDLLKNQPLLVVGNLPY  107 (262)
T ss_dssp             TSCGGGHCSSSEEEEEEEETG
T ss_pred             ccccHHhhcCCceEEEEEecc
Confidence            988654111223345556665

g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....

>PRK00811 spermidine synthase; Provisional

Probab=97.96  E-value=2.5e-05  Score=72.63  Aligned_cols=78  Identities=14%  Similarity=0.161  Sum_probs=62.1

Q ss_pred             CCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhC-----CCcEEEEeccCCCCCC-CCCCCce
Q 019802          240 KPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSG-----AANIEVLHGDFLNLDP-KDPAYSE  313 (335)
Q Consensus       240 ~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g-----~~ni~~~~~D~~~~~~-~~~~fd~  313 (335)
                      ..+.+|||+|||.|+.+..++.. .+..+|+++|+++..++.+++.+...+     -++++++.+|+..+-. ..+.|| 
T Consensus        75 ~~p~~VL~iG~G~G~~~~~~l~~-~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yD-  152 (283)
T PRK00811         75 PNPKRVLIIGGGDGGTLREVLKH-PSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFD-  152 (283)
T ss_pred             CCCCEEEEEecCchHHHHHHHcC-CCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCccc-
Confidence            34679999999999999998865 344689999999999999999987653     2469999999987543 344576 


Q ss_pred             EEEEEEec
Q 019802          314 VSLIFCIF  321 (335)
Q Consensus       314 V~~IllD~  321 (335)
                        .|++|.
T Consensus       153 --vIi~D~  158 (283)
T PRK00811        153 --VIIVDS  158 (283)
T ss_pred             --EEEECC
Confidence              478885

>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]

Probab=97.96  E-value=3.9e-05  Score=68.03  Aligned_cols=79  Identities=22%  Similarity=0.217  Sum_probs=65.8

Q ss_pred             CCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCceEEEEEEec
Q 019802          242 GWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVSLIFCIF  321 (335)
Q Consensus       242 g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~~~~~~fd~V~~IllD~  321 (335)
                      +.+|+|+|+|+|--+.-+|- +.++.+|+-+|...+|+.-+++-.+.+|++|++++++.++++......||.   |..-+
T Consensus        68 ~~~~~DIGSGaGfPGipLAI-~~p~~~vtLles~~Kk~~FL~~~~~eL~L~nv~i~~~RaE~~~~~~~~~D~---vtsRA  143 (215)
T COG0357          68 AKRVLDIGSGAGFPGIPLAI-AFPDLKVTLLESLGKKIAFLREVKKELGLENVEIVHGRAEEFGQEKKQYDV---VTSRA  143 (215)
T ss_pred             CCEEEEeCCCCCCchhhHHH-hccCCcEEEEccCchHHHHHHHHHHHhCCCCeEEehhhHhhcccccccCcE---EEeeh
Confidence            68999999999999999984 456788999999999999999999999999999999999998764332665   44444


Q ss_pred             ccc
Q 019802          322 TWM  324 (335)
Q Consensus       322 ~cs  324 (335)
                      .++
T Consensus       144 va~  146 (215)
T COG0357         144 VAS  146 (215)
T ss_pred             ccc
Confidence            444

>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]

Probab=97.92  E-value=5.6e-05  Score=68.40  Aligned_cols=76  Identities=32%  Similarity=0.476  Sum_probs=63.7

Q ss_pred             HHHHcCCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCC-cEEEEeccCCCCCCCCCCC
Q 019802          233 VAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAA-NIEVLHGDFLNLDPKDPAY  311 (335)
Q Consensus       233 ~~~~l~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~-ni~~~~~D~~~~~~~~~~f  311 (335)
                      ++.-.+.++++.||++|-|||..|..|.+.   ..+|+|+|+++.++..+.++.+..... ...++++|+...+.  +.|
T Consensus        50 I~~ka~~k~tD~VLEvGPGTGnLT~~lLe~---~kkVvA~E~Dprmvael~krv~gtp~~~kLqV~~gD~lK~d~--P~f  124 (315)
T KOG0820|consen   50 IVEKADLKPTDVVLEVGPGTGNLTVKLLEA---GKKVVAVEIDPRMVAELEKRVQGTPKSGKLQVLHGDFLKTDL--PRF  124 (315)
T ss_pred             HHhccCCCCCCEEEEeCCCCCHHHHHHHHh---cCeEEEEecCcHHHHHHHHHhcCCCccceeeEEecccccCCC--ccc
Confidence            344567899999999999999999999987   468999999999999999999865543 38899999988764  347


Q ss_pred             ce
Q 019802          312 SE  313 (335)
Q Consensus       312 d~  313 (335)
                      |.
T Consensus       125 d~  126 (315)
T KOG0820|consen  125 DG  126 (315)
T ss_pred             ce
Confidence            65

>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional

Probab=97.90  E-value=8.4e-05  Score=77.55  Aligned_cols=85  Identities=14%  Similarity=0.176  Sum_probs=68.4

Q ss_pred             HcCC-CCCCEEEEEcCCCchHHHHHHHHcC-----------------------------------------CCeEEEEEe
Q 019802          236 ALAP-KPGWKVLDACSAPGNKTVHLAALMK-----------------------------------------GKGKIVACE  273 (335)
Q Consensus       236 ~l~~-~~g~~VLD~cagpG~kt~~la~~~~-----------------------------------------~~g~i~a~D  273 (335)
                      +.+. ++++.++|-+||+|...+..|....                                         ...+|+++|
T Consensus       184 ~a~w~~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~~~~~~i~G~D  263 (702)
T PRK11783        184 RSGWPQEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGLAELPSKFYGSD  263 (702)
T ss_pred             HcCCCCCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhcccccCceEEEEE
Confidence            3444 5789999999999999988775311                                         123799999


Q ss_pred             CCHHHHHHHHHHHHHhCCCc-EEEEeccCCCCCCCC--CCCceEEEEEEeccc
Q 019802          274 LNKERVRRLKDTIKLSGAAN-IEVLHGDFLNLDPKD--PAYSEVSLIFCIFTW  323 (335)
Q Consensus       274 ~~~~rl~~~~~~~~~~g~~n-i~~~~~D~~~~~~~~--~~fd~V~~IllD~~c  323 (335)
                      +++.+++.+++|++..|+.+ |.+.++|+.+++...  +.||   .|+.|||.
T Consensus       264 id~~av~~A~~N~~~~g~~~~i~~~~~D~~~~~~~~~~~~~d---~IvtNPPY  313 (702)
T PRK11783        264 IDPRVIQAARKNARRAGVAELITFEVKDVADLKNPLPKGPTG---LVISNPPY  313 (702)
T ss_pred             CCHHHHHHHHHHHHHcCCCcceEEEeCChhhcccccccCCCC---EEEECCCC
Confidence            99999999999999999965 899999999886543  3455   59999997

>TIGR02081 metW methionine biosynthesis protein MetW

Probab=97.89  E-value=5.1e-05  Score=66.43  Aligned_cols=66  Identities=23%  Similarity=0.316  Sum_probs=50.8

Q ss_pred             CCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCC-CC-CCCCCCceE
Q 019802          240 KPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLN-LD-PKDPAYSEV  314 (335)
Q Consensus       240 ~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~-~~-~~~~~fd~V  314 (335)
                      .++++|||+|||+|..+..+++..  ...++++|+++.+++.++++       +++++++|+.+ ++ ..+++||.|
T Consensus        12 ~~~~~iLDiGcG~G~~~~~l~~~~--~~~~~giD~s~~~i~~a~~~-------~~~~~~~d~~~~l~~~~~~sfD~V   79 (194)
T TIGR02081        12 PPGSRVLDLGCGDGELLALLRDEK--QVRGYGIEIDQDGVLACVAR-------GVNVIQGDLDEGLEAFPDKSFDYV   79 (194)
T ss_pred             CCCCEEEEeCCCCCHHHHHHHhcc--CCcEEEEeCCHHHHHHHHHc-------CCeEEEEEhhhcccccCCCCcCEE
Confidence            467899999999999998887653  35789999999999887542       46788888875 33 445678863

This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.

>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]

Probab=97.87  E-value=2.5e-05  Score=70.38  Aligned_cols=70  Identities=20%  Similarity=0.242  Sum_probs=52.8

Q ss_pred             CCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCC------cEEEEeccCCCCCCCCCCCce
Q 019802          240 KPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAA------NIEVLHGDFLNLDPKDPAYSE  313 (335)
Q Consensus       240 ~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~------ni~~~~~D~~~~~~~~~~fd~  313 (335)
                      ..|.+|||+|||.|-.+.+||.+   ...|+++|+++.+++.+++-.......      .+++.+.|++....   .||.
T Consensus        88 ~~g~~ilDvGCGgGLLSepLArl---ga~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~~~---~fDa  161 (282)
T KOG1270|consen   88 LLGMKILDVGCGGGLLSEPLARL---GAQVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGLTG---KFDA  161 (282)
T ss_pred             cCCceEEEeccCccccchhhHhh---CCeeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhccc---ccce
Confidence            34788999999999999999987   378999999999999999984322221      24566666666543   3886


Q ss_pred             EE
Q 019802          314 VS  315 (335)
Q Consensus       314 V~  315 (335)
                      |.
T Consensus       162 Vv  163 (282)
T KOG1270|consen  162 VV  163 (282)
T ss_pred             ee
Confidence            43

>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=97.87  E-value=8.6e-05  Score=64.44  Aligned_cols=91  Identities=26%  Similarity=0.311  Sum_probs=75.5

Q ss_pred             hHHHHHHHc------CCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCC
Q 019802          229 ASSMVAAAL------APKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFL  302 (335)
Q Consensus       229 ~s~l~~~~l------~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~  302 (335)
                      -|.+.+..+      ..++|++||=+||++|....|++...+ +|.|+|++.+++..+.+-..+++  -+||-.+.+||.
T Consensus        58 RSKLaAaIl~Gl~~~pi~~g~~VLYLGAasGTTvSHVSDIv~-~G~iYaVEfs~R~~reLl~~a~~--R~Ni~PIL~DA~  134 (231)
T COG1889          58 RSKLAAAILKGLKNFPIKEGSKVLYLGAASGTTVSHVSDIVG-EGRIYAVEFSPRPMRELLDVAEK--RPNIIPILEDAR  134 (231)
T ss_pred             hhHHHHHHHcCcccCCcCCCCEEEEeeccCCCcHhHHHhccC-CCcEEEEEecchhHHHHHHHHHh--CCCceeeecccC
Confidence            455555544      356899999999999999999999987 79999999999999998888886  458999999998


Q ss_pred             CCCCCCCCCceEEEEEEecc
Q 019802          303 NLDPKDPAYSEVSLIFCIFT  322 (335)
Q Consensus       303 ~~~~~~~~fd~V~~IllD~~  322 (335)
                      .+.....-.+.||+|+.|..
T Consensus       135 ~P~~Y~~~Ve~VDviy~DVA  154 (231)
T COG1889         135 KPEKYRHLVEKVDVIYQDVA  154 (231)
T ss_pred             CcHHhhhhcccccEEEEecC
Confidence            87755444578999999964

>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=97.85  E-value=8.2e-05  Score=63.52  Aligned_cols=80  Identities=16%  Similarity=0.202  Sum_probs=67.5

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCceEEEEEEe
Q 019802          241 PGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVSLIFCI  320 (335)
Q Consensus       241 ~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~~~~~~fd~V~~IllD  320 (335)
                      ....++++|||+|..++.+++...++....|.|++++.++.-++.++..++ ++.+++.|...--..    ..||.++++
T Consensus        43 ~~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~-~~~~V~tdl~~~l~~----~~VDvLvfN  117 (209)
T KOG3191|consen   43 NPEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRV-HIDVVRTDLLSGLRN----ESVDVLVFN  117 (209)
T ss_pred             CceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCC-ccceeehhHHhhhcc----CCccEEEEC
Confidence            367899999999999999999998888999999999999999999998887 478888887653322    567789999


Q ss_pred             ccccc
Q 019802          321 FTWMI  325 (335)
Q Consensus       321 ~~cs~  325 (335)
                      ||.-.
T Consensus       118 PPYVp  122 (209)
T KOG3191|consen  118 PPYVP  122 (209)
T ss_pred             CCcCc
Confidence            88653

>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C

Probab=97.83  E-value=5.2e-05  Score=63.43  Aligned_cols=75  Identities=17%  Similarity=0.198  Sum_probs=54.1

Q ss_pred             hHHHHHHHcC-CCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCC
Q 019802          229 ASSMVAAALA-PKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPK  307 (335)
Q Consensus       229 ~s~l~~~~l~-~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~~~  307 (335)
                      -+.++..+.. ..++.+|||+|||.|..+..++..   ..+++++|+++.+++.          .++.....+.......
T Consensus         9 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~---~~~~~g~D~~~~~~~~----------~~~~~~~~~~~~~~~~   75 (161)
T PF13489_consen    9 YADLLERLLPRLKPGKRVLDIGCGTGSFLRALAKR---GFEVTGVDISPQMIEK----------RNVVFDNFDAQDPPFP   75 (161)
T ss_dssp             HHHHHHHHHTCTTTTSEEEEESSTTSHHHHHHHHT---TSEEEEEESSHHHHHH----------TTSEEEEEECHTHHCH
T ss_pred             HHHHHHHHhcccCCCCEEEEEcCCCCHHHHHHHHh---CCEEEEEECCHHHHhh----------hhhhhhhhhhhhhhcc
Confidence            3445555664 577899999999999999999765   2499999999999988          3444555545455455


Q ss_pred             CCCCceEEE
Q 019802          308 DPAYSEVSL  316 (335)
Q Consensus       308 ~~~fd~V~~  316 (335)
                      ++.||.|.+
T Consensus        76 ~~~fD~i~~   84 (161)
T PF13489_consen   76 DGSFDLIIC   84 (161)
T ss_dssp             SSSEEEEEE
T ss_pred             ccchhhHhh
Confidence            567876533

...

>TIGR00478 tly hemolysin TlyA family protein

Probab=97.78  E-value=2.9e-05  Score=69.77  Aligned_cols=44  Identities=18%  Similarity=0.203  Sum_probs=36.7

Q ss_pred             CCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHH-HHHH
Q 019802          240 KPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRR-LKDT  285 (335)
Q Consensus       240 ~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~-~~~~  285 (335)
                      .+|..|||+|||||+.|..+++.  +..+|+|+|+++.++.. ++++
T Consensus        74 ~~~~~vlDiG~gtG~~t~~l~~~--ga~~v~avD~~~~~l~~~l~~~  118 (228)
T TIGR00478        74 VKNKIVLDVGSSTGGFTDCALQK--GAKEVYGVDVGYNQLAEKLRQD  118 (228)
T ss_pred             CCCCEEEEcccCCCHHHHHHHHc--CCCEEEEEeCCHHHHHHHHhcC
Confidence            46789999999999999999986  35799999999988875 4443

Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).

>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional

Probab=97.78  E-value=8.2e-05  Score=70.05  Aligned_cols=77  Identities=19%  Similarity=0.286  Sum_probs=56.9

Q ss_pred             CCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCceEEEEE
Q 019802          239 PKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVSLIF  318 (335)
Q Consensus       239 ~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~~~~~~fd~V~~Il  318 (335)
                      +.+|..+||+||+|||.|-.+.++   +.+|+|+|..+     +...+.  .-.+|+...+|...+.+...   .|+.++
T Consensus       209 ~~~g~~vlDLGAsPGGWT~~L~~r---G~~V~AVD~g~-----l~~~L~--~~~~V~h~~~d~fr~~p~~~---~vDwvV  275 (357)
T PRK11760        209 LAPGMRAVDLGAAPGGWTYQLVRR---GMFVTAVDNGP-----MAQSLM--DTGQVEHLRADGFKFRPPRK---NVDWLV  275 (357)
T ss_pred             cCCCCEEEEeCCCCcHHHHHHHHc---CCEEEEEechh-----cCHhhh--CCCCEEEEeccCcccCCCCC---CCCEEE
Confidence            468999999999999999999887   35999999543     222222  33468999999888765433   456799


Q ss_pred             Eecccccccc
Q 019802          319 CIFTWMIIMF  328 (335)
Q Consensus       319 lD~~cs~~g~  328 (335)
                      ||.-|...-+
T Consensus       276 cDmve~P~rv  285 (357)
T PRK11760        276 CDMVEKPARV  285 (357)
T ss_pred             EecccCHHHH
Confidence            9988875443

>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes

Probab=97.75  E-value=5.9e-06  Score=71.46  Aligned_cols=76  Identities=22%  Similarity=0.273  Sum_probs=50.0

Q ss_pred             CCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCC----C---CCCc
Q 019802          240 KPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPK----D---PAYS  312 (335)
Q Consensus       240 ~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~~~----~---~~fd  312 (335)
                      .++..|||+||||||.|..+.+..+..++|+|+|+.+.           ....++..+++|..+....    .   ....
T Consensus        22 ~~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~-----------~~~~~~~~i~~d~~~~~~~~~i~~~~~~~~~   90 (181)
T PF01728_consen   22 GKGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPM-----------DPLQNVSFIQGDITNPENIKDIRKLLPESGE   90 (181)
T ss_dssp             TTTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSST-----------GS-TTEEBTTGGGEEEEHSHHGGGSHGTTTC
T ss_pred             ccccEEEEcCCcccceeeeeeecccccceEEEEecccc-----------ccccceeeeecccchhhHHHhhhhhcccccc
Confidence            35689999999999999999998756799999999876           2335677778877553211    0   1113


Q ss_pred             eEEEEEEec--ccccc
Q 019802          313 EVSLIFCIF--TWMII  326 (335)
Q Consensus       313 ~V~~IllD~--~cs~~  326 (335)
                      .++.|++|.  .++|.
T Consensus        91 ~~dlv~~D~~~~~~g~  106 (181)
T PF01728_consen   91 KFDLVLSDMAPNVSGD  106 (181)
T ss_dssp             SESEEEE-------SS
T ss_pred             CcceeccccccCCCCc
Confidence            567799997  44443

RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....

>TIGR01444 fkbM_fam methyltransferase, FkbM family

Probab=97.73  E-value=0.00012  Score=60.43  Aligned_cols=59  Identities=20%  Similarity=0.331  Sum_probs=51.5

Q ss_pred             EEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCC
Q 019802          244 KVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLN  303 (335)
Q Consensus       244 ~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~  303 (335)
                      .|||+||+.|..+..++... +.++|+++|.++..++.++++++..++.++.+++....+
T Consensus         1 ~vlDiGa~~G~~~~~~~~~~-~~~~v~~~E~~~~~~~~l~~~~~~n~~~~v~~~~~al~~   59 (143)
T TIGR01444         1 VVIDVGANIGDTSLYFARKG-AEGRVIAFEPLPDAYEILEENVKLNNLPNVVLLNAAVGD   59 (143)
T ss_pred             CEEEccCCccHHHHHHHHhC-CCCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEEeeeeC
Confidence            48999999999999998874 456999999999999999999999988888888766644

Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.

>PRK04148 hypothetical protein; Provisional

Probab=97.72  E-value=0.00026  Score=58.09  Aligned_cols=75  Identities=13%  Similarity=0.127  Sum_probs=53.8

Q ss_pred             HHHHcCCCCCCEEEEEcCCCch-HHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCC-CC
Q 019802          233 VAAALAPKPGWKVLDACSAPGN-KTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKD-PA  310 (335)
Q Consensus       233 ~~~~l~~~~g~~VLD~cagpG~-kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~~~~-~~  310 (335)
                      +...+....+.+|||+|||.|. .+..|++.   +..|+|+|+++.+++.++++    +   +.++..|..+.++.. ..
T Consensus         8 l~~~~~~~~~~kileIG~GfG~~vA~~L~~~---G~~ViaIDi~~~aV~~a~~~----~---~~~v~dDlf~p~~~~y~~   77 (134)
T PRK04148          8 IAENYEKGKNKKIVELGIGFYFKVAKKLKES---GFDVIVIDINEKAVEKAKKL----G---LNAFVDDLFNPNLEIYKN   77 (134)
T ss_pred             HHHhcccccCCEEEEEEecCCHHHHHHHHHC---CCEEEEEECCHHHHHHHHHh----C---CeEEECcCCCCCHHHHhc
Confidence            4444444567899999999997 66666654   36999999999988877665    3   578999998877642 33


Q ss_pred             CceEEEE
Q 019802          311 YSEVSLI  317 (335)
Q Consensus       311 fd~V~~I  317 (335)
                      +|.|..|
T Consensus        78 a~liysi   84 (134)
T PRK04148         78 AKLIYSI   84 (134)
T ss_pred             CCEEEEe
Confidence            5554433

>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed

Probab=97.64  E-value=0.00015  Score=72.85  Aligned_cols=79  Identities=10%  Similarity=0.064  Sum_probs=65.3

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCC--CCCCCCceEEEEE
Q 019802          241 PGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLD--PKDPAYSEVSLIF  318 (335)
Q Consensus       241 ~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~--~~~~~fd~V~~Il  318 (335)
                      .+..+||+|||.|..+.++|... ++..++++|++...+..+.+.+.+.|++|+.+++.|+..+.  ..++++|   .|+
T Consensus       347 ~~p~~lEIG~G~G~~~~~~A~~~-p~~~~iGiE~~~~~~~~~~~~~~~~~l~N~~~~~~~~~~~~~~~~~~sv~---~i~  422 (506)
T PRK01544        347 KRKVFLEIGFGMGEHFINQAKMN-PDALFIGVEVYLNGVANVLKLAGEQNITNFLLFPNNLDLILNDLPNNSLD---GIY  422 (506)
T ss_pred             CCceEEEECCCchHHHHHHHHhC-CCCCEEEEEeeHHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHhcCccccc---EEE
Confidence            46789999999999999999984 56899999999999999999999999999999999886443  2344455   577


Q ss_pred             Eeccc
Q 019802          319 CIFTW  323 (335)
Q Consensus       319 lD~~c  323 (335)
                      +.||+
T Consensus       423 i~FPD  427 (506)
T PRK01544        423 ILFPD  427 (506)
T ss_pred             EECCC
Confidence            77664

>PF13679 Methyltransf_32: Methyltransferase domain

Probab=97.63  E-value=0.00018  Score=59.72  Aligned_cols=64  Identities=20%  Similarity=0.283  Sum_probs=52.7

Q ss_pred             CCCCEEEEEcCCCchHHHHHHHHc---CCCeEEEEEeCCHHHHHHHHHHHHHhC--C-CcEEEEeccCCC
Q 019802          240 KPGWKVLDACSAPGNKTVHLAALM---KGKGKIVACELNKERVRRLKDTIKLSG--A-ANIEVLHGDFLN  303 (335)
Q Consensus       240 ~~g~~VLD~cagpG~kt~~la~~~---~~~g~i~a~D~~~~rl~~~~~~~~~~g--~-~ni~~~~~D~~~  303 (335)
                      .+...|+|+|||-|..+..++.++   ..+.+|+++|.++..++.+.++.++.+  . .++.+..++...
T Consensus        24 ~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~   93 (141)
T PF13679_consen   24 KRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLGSDLEKRLSFIQGDIAD   93 (141)
T ss_pred             CCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhcchhhccchhhccchhh
Confidence            678899999999999999999944   345799999999999999999999988  4 445555555443

>PLN02366 spermidine synthase

Probab=97.62  E-value=0.00023  Score=66.91  Aligned_cols=80  Identities=18%  Similarity=0.123  Sum_probs=62.5

Q ss_pred             CCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhC--C--CcEEEEeccCCCCCC--CCCCCce
Q 019802          240 KPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSG--A--ANIEVLHGDFLNLDP--KDPAYSE  313 (335)
Q Consensus       240 ~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g--~--~ni~~~~~D~~~~~~--~~~~fd~  313 (335)
                      ....+||++|+|.|+....+++. .+..+|+.+|+++..++.+++.+...+  +  ++++++.+|+..+-.  ..+.||.
T Consensus        90 ~~pkrVLiIGgG~G~~~rellk~-~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~yDv  168 (308)
T PLN02366         90 PNPKKVLVVGGGDGGVLREIARH-SSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTYDA  168 (308)
T ss_pred             CCCCeEEEEcCCccHHHHHHHhC-CCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCCCE
Confidence            45679999999999999998865 445689999999999999999987642  2  469999999876432  1346775


Q ss_pred             EEEEEEeccc
Q 019802          314 VSLIFCIFTW  323 (335)
Q Consensus       314 V~~IllD~~c  323 (335)
                         |++|.+.
T Consensus       169 ---Ii~D~~d  175 (308)
T PLN02366        169 ---IIVDSSD  175 (308)
T ss_pred             ---EEEcCCC
Confidence               7888643

>PRK13256 thiopurine S-methyltransferase; Reviewed

Probab=97.60  E-value=0.00028  Score=63.29  Aligned_cols=73  Identities=18%  Similarity=0.180  Sum_probs=56.4

Q ss_pred             CCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHH------------HHhCCCcEEEEeccCCCCC
Q 019802          238 APKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTI------------KLSGAANIEVLHGDFLNLD  305 (335)
Q Consensus       238 ~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~------------~~~g~~ni~~~~~D~~~~~  305 (335)
                      .+.++.+||+.+||.|--..+||++   +..|+++|+|+..++.+.+..            .+..-.+|++.++|+.+++
T Consensus        40 ~~~~~~rvLvPgCGkg~D~~~LA~~---G~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~  116 (226)
T PRK13256         40 NINDSSVCLIPMCGCSIDMLFFLSK---GVKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLP  116 (226)
T ss_pred             CCCCCCeEEEeCCCChHHHHHHHhC---CCcEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCCC
Confidence            3446789999999999999999987   467999999999999875521            1122236999999999987


Q ss_pred             CCC---CCCce
Q 019802          306 PKD---PAYSE  313 (335)
Q Consensus       306 ~~~---~~fd~  313 (335)
                      +..   ..||.
T Consensus       117 ~~~~~~~~fD~  127 (226)
T PRK13256        117 KIANNLPVFDI  127 (226)
T ss_pred             ccccccCCcCe
Confidence            521   45775

>PRK01581 speE spermidine synthase; Validated

Probab=97.60  E-value=0.00019  Score=68.43  Aligned_cols=80  Identities=13%  Similarity=0.051  Sum_probs=59.1

Q ss_pred             CCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHH--H---HHh--CCCcEEEEeccCCCCC-CCCCCC
Q 019802          240 KPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDT--I---KLS--GAANIEVLHGDFLNLD-PKDPAY  311 (335)
Q Consensus       240 ~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~--~---~~~--g~~ni~~~~~D~~~~~-~~~~~f  311 (335)
                      ....+||++|+|.|+....+.+. .+..+|+++|+++.+++.+++.  +   .+.  .-++++++.+|+.++- .....|
T Consensus       149 ~~PkrVLIIGgGdG~tlrelLk~-~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~~~Y  227 (374)
T PRK01581        149 IDPKRVLILGGGDGLALREVLKY-ETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPSSLY  227 (374)
T ss_pred             CCCCEEEEECCCHHHHHHHHHhc-CCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcCCCc
Confidence            34569999999999977766654 4457999999999999999962  1   222  2357999999998853 334456


Q ss_pred             ceEEEEEEeccc
Q 019802          312 SEVSLIFCIFTW  323 (335)
Q Consensus       312 d~V~~IllD~~c  323 (335)
                      |   .|++|++-
T Consensus       228 D---VIIvDl~D  236 (374)
T PRK01581        228 D---VIIIDFPD  236 (374)
T ss_pred             c---EEEEcCCC
Confidence            6   59999754

>PRK03612 spermidine synthase; Provisional

Probab=97.59  E-value=0.00016  Score=72.89  Aligned_cols=81  Identities=10%  Similarity=0.083  Sum_probs=61.6

Q ss_pred             CCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHH--HHHh-----CCCcEEEEeccCCCCC-CCCCCC
Q 019802          240 KPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDT--IKLS-----GAANIEVLHGDFLNLD-PKDPAY  311 (335)
Q Consensus       240 ~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~--~~~~-----g~~ni~~~~~D~~~~~-~~~~~f  311 (335)
                      +++.+|||+|+|.|..+..+++. ++..+|+++|+++++++.++++  +...     .-++++++++|+.+.- ...++|
T Consensus       296 ~~~~rVL~IG~G~G~~~~~ll~~-~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~f  374 (521)
T PRK03612        296 ARPRRVLVLGGGDGLALREVLKY-PDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEKF  374 (521)
T ss_pred             CCCCeEEEEcCCccHHHHHHHhC-CCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCCC
Confidence            45679999999999999988864 3336999999999999999994  3332     2256999999998743 233567


Q ss_pred             ceEEEEEEecccc
Q 019802          312 SEVSLIFCIFTWM  324 (335)
Q Consensus       312 d~V~~IllD~~cs  324 (335)
                      |.   |++|++..
T Consensus       375 Dv---Ii~D~~~~  384 (521)
T PRK03612        375 DV---IIVDLPDP  384 (521)
T ss_pred             CE---EEEeCCCC
Confidence            74   88897653

>TIGR00417 speE spermidine synthase

Probab=97.58  E-value=0.00029  Score=65.02  Aligned_cols=79  Identities=10%  Similarity=0.055  Sum_probs=60.2

Q ss_pred             CCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhC----CCcEEEEeccCCCCC-CCCCCCceE
Q 019802          240 KPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSG----AANIEVLHGDFLNLD-PKDPAYSEV  314 (335)
Q Consensus       240 ~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g----~~ni~~~~~D~~~~~-~~~~~fd~V  314 (335)
                      ..+.+||++|+|.|+.+..++... +..+++++|+++..++.+++.+...+    ..+++++.+|+...- .....||. 
T Consensus        71 ~~p~~VL~iG~G~G~~~~~ll~~~-~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yDv-  148 (270)
T TIGR00417        71 PNPKHVLVIGGGDGGVLREVLKHK-SVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFDV-  148 (270)
T ss_pred             CCCCEEEEEcCCchHHHHHHHhCC-CcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCccE-
Confidence            344599999999999988887653 34689999999999999999887653    246888889986632 22346774 


Q ss_pred             EEEEEecc
Q 019802          315 SLIFCIFT  322 (335)
Q Consensus       315 ~~IllD~~  322 (335)
                        |++|++
T Consensus       149 --Ii~D~~  154 (270)
T TIGR00417       149 --IIVDST  154 (270)
T ss_pred             --EEEeCC
Confidence              788875

the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.

>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]

Probab=97.57  E-value=0.00023  Score=63.40  Aligned_cols=95  Identities=25%  Similarity=0.234  Sum_probs=76.4

Q ss_pred             hHHHHHHHc------CCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCC
Q 019802          229 ASSMVAAAL------APKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFL  302 (335)
Q Consensus       229 ~s~l~~~~l------~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~  302 (335)
                      -|.|++-++      ..+||.+||=+||+.|..-.|++..++++|.|+|+|.|..-=+.+-..+++.  +||..+..|++
T Consensus       138 rSKLAA~I~gGvdnihikpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAkkR--tNiiPIiEDAr  215 (317)
T KOG1596|consen  138 RSKLAAGILGGVDNIHIKPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAKKR--TNIIPIIEDAR  215 (317)
T ss_pred             HHHHHHHhhcCccceeecCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhhcc--CCceeeeccCC
Confidence            456665544      3689999999999999999999999999999999999987777776666643  58999999998


Q ss_pred             CCCCCCCCCceEEEEEEeccccc
Q 019802          303 NLDPKDPAYSEVSLIFCIFTWMI  325 (335)
Q Consensus       303 ~~~~~~~~fd~V~~IllD~~cs~  325 (335)
                      .....-.....||+||-|.+.+.
T Consensus       216 hP~KYRmlVgmVDvIFaDvaqpd  238 (317)
T KOG1596|consen  216 HPAKYRMLVGMVDVIFADVAQPD  238 (317)
T ss_pred             CchheeeeeeeEEEEeccCCCch
Confidence            86654444468999999977653

>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]

Probab=97.54  E-value=0.00036  Score=69.81  Aligned_cols=112  Identities=20%  Similarity=0.271  Sum_probs=87.8

Q ss_pred             ccceEEecCchHHHHHHHcCCCCCCEEEEEcCCCchHHHHHHHHcCC---CeEEEEEeCCHHHHHHHHHHHHHhCCC-cE
Q 019802          219 VNGCVFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKG---KGKIVACELNKERVRRLKDTIKLSGAA-NI  294 (335)
Q Consensus       219 ~~g~~~iQd~~s~l~~~~l~~~~g~~VLD~cagpG~kt~~la~~~~~---~g~i~a~D~~~~rl~~~~~~~~~~g~~-ni  294 (335)
                      ..|.|+--..-+.++++++.|++..+|+|-|||+||.-......++.   ...+++.|+++.....++-|+--.|+. ++
T Consensus       164 ~~GEfyTP~~v~~liv~~l~~~~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lhgi~~~~  243 (489)
T COG0286         164 EAGEFYTPREVSELIVELLDPEPRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILHGIEGDA  243 (489)
T ss_pred             CCCccCChHHHHHHHHHHcCCCCCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHHhCCCccc
Confidence            33666666667889999999999999999999999999999888753   378999999999999999999998886 46


Q ss_pred             EEEeccCCCCCCCCCCC--ceEEEEEEecccccccccc
Q 019802          295 EVLHGDFLNLDPKDPAY--SEVSLIFCIFTWMIIMFHG  330 (335)
Q Consensus       295 ~~~~~D~~~~~~~~~~f--d~V~~IllD~~cs~~g~~~  330 (335)
                      .+.++|-..-+.....+  ..+|.|+-+||.|+.+..+
T Consensus       244 ~i~~~dtl~~~~~~~~~~~~~~D~viaNPPf~~~~~~~  281 (489)
T COG0286         244 NIRHGDTLSNPKHDDKDDKGKFDFVIANPPFSGKGWGG  281 (489)
T ss_pred             cccccccccCCcccccCCccceeEEEeCCCCCcccccc
Confidence            67777765554332112  2355799999999766543

>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family

Probab=97.52  E-value=0.0003  Score=71.08  Aligned_cols=86  Identities=14%  Similarity=0.151  Sum_probs=62.9

Q ss_pred             CCEEEEEcCCCchHHHHHHHHcCC-------CeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCC--CCCCCc
Q 019802          242 GWKVLDACSAPGNKTVHLAALMKG-------KGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDP--KDPAYS  312 (335)
Q Consensus       242 g~~VLD~cagpG~kt~~la~~~~~-------~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~~--~~~~fd  312 (335)
                      +.+|||.|||+|+....++..+..       .-.++++|+++..+..++.++...+.-.+.+.+.|......  .....+
T Consensus        32 ~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~~~~~~i~~~d~l~~~~~~~~~~~~  111 (524)
T TIGR02987        32 KTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFALLEINVINFNSLSYVLLNIESYLD  111 (524)
T ss_pred             ceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcCCCCceeeecccccccccccccccC
Confidence            458999999999999999887631       25789999999999999999988773345666666543221  111123


Q ss_pred             eEEEEEEeccccccc
Q 019802          313 EVSLIFCIFTWMIIM  327 (335)
Q Consensus       313 ~V~~IllD~~cs~~g  327 (335)
                      ..|.|+.+||.....
T Consensus       112 ~fD~IIgNPPy~~~k  126 (524)
T TIGR02987       112 LFDIVITNPPYGRLK  126 (524)
T ss_pred             cccEEEeCCCccccC
Confidence            445699999998753

Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.

>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []

Probab=97.51  E-value=0.00036  Score=68.86  Aligned_cols=75  Identities=24%  Similarity=0.343  Sum_probs=57.2

Q ss_pred             CCEEEEEcCCCchHHHHHHHH---cCCCeEEEEEeCCHHHHHHHHHHHHHhCC-CcEEEEeccCCCCCCCCCCCceEEEE
Q 019802          242 GWKVLDACSAPGNKTVHLAAL---MKGKGKIVACELNKERVRRLKDTIKLSGA-ANIEVLHGDFLNLDPKDPAYSEVSLI  317 (335)
Q Consensus       242 g~~VLD~cagpG~kt~~la~~---~~~~g~i~a~D~~~~rl~~~~~~~~~~g~-~ni~~~~~D~~~~~~~~~~fd~V~~I  317 (335)
                      +..|+|+|||+|......+..   .+...+|+|+|.++.....+++.+++.|. +.|+++++|.+++..+.    +||.|
T Consensus       187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w~~~V~vi~~d~r~v~lpe----kvDII  262 (448)
T PF05185_consen  187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGWGDKVTVIHGDMREVELPE----KVDII  262 (448)
T ss_dssp             T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTTTTTEEEEES-TTTSCHSS-----EEEE
T ss_pred             ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCCCCeEEEEeCcccCCCCCC----ceeEE
Confidence            568999999999998655443   34567999999999999999988888887 56999999999998754    56666


Q ss_pred             EEe
Q 019802          318 FCI  320 (335)
Q Consensus       318 llD  320 (335)
                      +=.
T Consensus       263 VSE  265 (448)
T PF05185_consen  263 VSE  265 (448)
T ss_dssp             EE-
T ss_pred             EEe
Confidence            655

These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....

>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=97.45  E-value=0.00075  Score=59.89  Aligned_cols=95  Identities=15%  Similarity=0.233  Sum_probs=78.2

Q ss_pred             EecCchHHHHHHHcCCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCC-cEEEEeccCC
Q 019802          224 FLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAA-NIEVLHGDFL  302 (335)
Q Consensus       224 ~iQd~~s~l~~~~l~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~-ni~~~~~D~~  302 (335)
                      .+-+...+++..++..-...++||+|.=+|.-+..+|..++.+|+|+++|+++.-.+...+..+..|+. .|+++++++.
T Consensus        56 ~v~~d~g~fl~~li~~~~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a~  135 (237)
T KOG1663|consen   56 LVGPDKGQFLQMLIRLLNAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGPAL  135 (237)
T ss_pred             ecChHHHHHHHHHHHHhCCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccccceeeeeecchh
Confidence            344556777777777778899999999999999999999999999999999999999999999999985 4999999986


Q ss_pred             CCCC------CCCCCceEEEEEEec
Q 019802          303 NLDP------KDPAYSEVSLIFCIF  321 (335)
Q Consensus       303 ~~~~------~~~~fd~V~~IllD~  321 (335)
                      +.-.      ..++||   -+|+|+
T Consensus       136 esLd~l~~~~~~~tfD---faFvDa  157 (237)
T KOG1663|consen  136 ESLDELLADGESGTFD---FAFVDA  157 (237)
T ss_pred             hhHHHHHhcCCCCcee---EEEEcc
Confidence            6321      234565   488875

>KOG2671 consensus Putative RNA methylase [Replication, recombination and repair]

Probab=97.44  E-value=0.00017  Score=67.36  Aligned_cols=91  Identities=24%  Similarity=0.341  Sum_probs=73.5

Q ss_pred             hHHHHHHHcCCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHH-------HHHHHHHHhCCCc--EEEEec
Q 019802          229 ASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVR-------RLKDTIKLSGAAN--IEVLHG  299 (335)
Q Consensus       229 ~s~l~~~~l~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~-------~~~~~~~~~g~~n--i~~~~~  299 (335)
                      -|-+.+....++||+.|.|=..|+|+.-...|..   ++.|++.||+-.+++       -++.|++.+|+..  +.++.+
T Consensus       196 LSli~AN~Amv~pGdivyDPFVGTGslLvsaa~F---Ga~viGtDIDyr~vragrg~~~si~aNFkQYg~~~~fldvl~~  272 (421)
T KOG2671|consen  196 LSLIMANQAMVKPGDIVYDPFVGTGSLLVSAAHF---GAYVIGTDIDYRTVRAGRGEDESIKANFKQYGSSSQFLDVLTA  272 (421)
T ss_pred             HHHHHhhhhccCCCCEEecCccccCceeeehhhh---cceeeccccchheeecccCCCcchhHhHHHhCCcchhhheeee
Confidence            3556667777899999999999999998888776   479999999988887       4789999999754  778999


Q ss_pred             cCCCCCCCCCCCceEEEEEEecccc
Q 019802          300 DFLNLDPKDPAYSEVSLIFCIFTWM  324 (335)
Q Consensus       300 D~~~~~~~~~~fd~V~~IllD~~cs  324 (335)
                      |+.+.+...+  -..|+|+||||.-
T Consensus       273 D~sn~~~rsn--~~fDaIvcDPPYG  295 (421)
T KOG2671|consen  273 DFSNPPLRSN--LKFDAIVCDPPYG  295 (421)
T ss_pred             cccCcchhhc--ceeeEEEeCCCcc
Confidence            9998776432  2345799999963

>COG2521 Predicted archaeal methyltransferase [General function prediction only]

Probab=97.41  E-value=6.2e-05  Score=66.71  Aligned_cols=89  Identities=17%  Similarity=0.183  Sum_probs=67.1

Q ss_pred             HHcCCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCC--CcEEEEeccCCCCC--CCCCC
Q 019802          235 AALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGA--ANIEVLHGDFLNLD--PKDPA  310 (335)
Q Consensus       235 ~~l~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~--~ni~~~~~D~~~~~--~~~~~  310 (335)
                      ....++.|++|||.|.|-|..++..+++  +...|+.++.+++-|++++-|==.-++  .+|+++.+|+-+.-  +.|.+
T Consensus       128 ~~V~~~~G~rVLDtC~GLGYtAi~a~~r--GA~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~e~V~~~~D~s  205 (287)
T COG2521         128 ELVKVKRGERVLDTCTGLGYTAIEALER--GAIHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAYEVVKDFDDES  205 (287)
T ss_pred             heeccccCCEeeeeccCccHHHHHHHHc--CCcEEEEEeeCCCeEEeeccCCCCccccccccEEecccHHHHHhcCCccc
Confidence            3456778999999999999999988876  345899999999999887665322122  25899999997754  45677


Q ss_pred             CceEEEEEEecccccccc
Q 019802          311 YSEVSLIFCIFTWMIIMF  328 (335)
Q Consensus       311 fd~V~~IllD~~cs~~g~  328 (335)
                      ||   +|+=|||--+...
T Consensus       206 fD---aIiHDPPRfS~Ag  220 (287)
T COG2521         206 FD---AIIHDPPRFSLAG  220 (287)
T ss_pred             cc---eEeeCCCccchhh
Confidence            87   4888988655544

>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]

Probab=97.35  E-value=0.00076  Score=63.37  Aligned_cols=75  Identities=21%  Similarity=0.259  Sum_probs=61.0

Q ss_pred             CCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCc-EEEEeccCCCCCCCCCCCceEEEEE
Q 019802          240 KPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAAN-IEVLHGDFLNLDPKDPAYSEVSLIF  318 (335)
Q Consensus       240 ~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~n-i~~~~~D~~~~~~~~~~fd~V~~Il  318 (335)
                      -.+..|||+|||+|-.+...|+.  +..+|+|+|.|.-. +.+.+.++..|+.+ |+++++..+++..+   ..+||.|+
T Consensus        59 f~dK~VlDVGcGtGILS~F~akA--GA~~V~aVe~S~ia-~~a~~iv~~N~~~~ii~vi~gkvEdi~LP---~eKVDiIv  132 (346)
T KOG1499|consen   59 FKDKTVLDVGCGTGILSMFAAKA--GARKVYAVEASSIA-DFARKIVKDNGLEDVITVIKGKVEDIELP---VEKVDIIV  132 (346)
T ss_pred             cCCCEEEEcCCCccHHHHHHHHh--CcceEEEEechHHH-HHHHHHHHhcCccceEEEeecceEEEecC---ccceeEEe
Confidence            46889999999999999988876  36799999988654 99999999999987 88999999887554   45566665


Q ss_pred             Ee
Q 019802          319 CI  320 (335)
Q Consensus       319 lD  320 (335)
                      -.
T Consensus       133 SE  134 (346)
T KOG1499|consen  133 SE  134 (346)
T ss_pred             eh
Confidence            43

>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes

Probab=97.32  E-value=0.0013  Score=62.51  Aligned_cols=87  Identities=20%  Similarity=0.324  Sum_probs=57.5

Q ss_pred             HHHHHHHcCC----CCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCC----------CcEE
Q 019802          230 SSMVAAALAP----KPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGA----------ANIE  295 (335)
Q Consensus       230 s~l~~~~l~~----~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~----------~ni~  295 (335)
                      |.|+...+..    .++.+|||+|||-||-..-....  +-..++++|++..-++.++++.+.+.-          -...
T Consensus        47 s~LI~~~~~~~~~~~~~~~VLDl~CGkGGDL~Kw~~~--~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~  124 (331)
T PF03291_consen   47 SVLIQKYAKKVKQNRPGLTVLDLCCGKGGDLQKWQKA--KIKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAE  124 (331)
T ss_dssp             HHHHHHHCHCCCCTTTT-EEEEET-TTTTTHHHHHHT--T-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEE
T ss_pred             HHHHHHHHHhhhccCCCCeEEEecCCCchhHHHHHhc--CCCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhh
Confidence            4555554431    27899999999999987766553  457999999999999999999843221          1356


Q ss_pred             EEeccCCCC------CCCCCCCceEEEEE
Q 019802          296 VLHGDFLNL------DPKDPAYSEVSLIF  318 (335)
Q Consensus       296 ~~~~D~~~~------~~~~~~fd~V~~Il  318 (335)
                      ++.+|+..-      ++....||.|.+-+
T Consensus       125 f~~~D~f~~~l~~~~~~~~~~FDvVScQF  153 (331)
T PF03291_consen  125 FIAADCFSESLREKLPPRSRKFDVVSCQF  153 (331)
T ss_dssp             EEESTTCCSHHHCTSSSTTS-EEEEEEES
T ss_pred             eeccccccchhhhhccccCCCcceeehHH
Confidence            788888642      22335788877765

The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.

>KOG4300 consensus Predicted methyltransferase [General function prediction only]

Probab=97.27  E-value=0.00089  Score=58.50  Aligned_cols=81  Identities=15%  Similarity=0.112  Sum_probs=61.7

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEE-EEeccCCCCC-CCCCCCceEEEEE
Q 019802          241 PGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIE-VLHGDFLNLD-PKDPAYSEVSLIF  318 (335)
Q Consensus       241 ~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~-~~~~D~~~~~-~~~~~fd~V~~Il  318 (335)
                      .-..||++|||||..--.. . +.+..+|+++|.+++|-+.+.+.++..-..++. ++++++++++ ..+.++|.|.+-|
T Consensus        76 ~K~~vLEvgcGtG~Nfkfy-~-~~p~~svt~lDpn~~mee~~~ks~~E~k~~~~~~fvva~ge~l~~l~d~s~DtVV~Tl  153 (252)
T KOG4300|consen   76 GKGDVLEVGCGTGANFKFY-P-WKPINSVTCLDPNEKMEEIADKSAAEKKPLQVERFVVADGENLPQLADGSYDTVVCTL  153 (252)
T ss_pred             CccceEEecccCCCCcccc-c-CCCCceEEEeCCcHHHHHHHHHHHhhccCcceEEEEeechhcCcccccCCeeeEEEEE
Confidence            3346899999999874322 1 225679999999999999999998887666777 9999999998 4778888755544


Q ss_pred             Eeccccc
Q 019802          319 CIFTWMI  325 (335)
Q Consensus       319 lD~~cs~  325 (335)
                      +  -||.
T Consensus       154 v--LCSv  158 (252)
T KOG4300|consen  154 V--LCSV  158 (252)
T ss_pred             E--Eecc
Confidence            4  3553

>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology

Probab=97.18  E-value=0.00065  Score=62.93  Aligned_cols=74  Identities=20%  Similarity=0.304  Sum_probs=56.2

Q ss_pred             EEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCceEEEEEEeccc
Q 019802          244 KVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVSLIFCIFTW  323 (335)
Q Consensus       244 ~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~~~~~~fd~V~~IllD~~c  323 (335)
                      +|+|++||.||.+.-+.+.  +--.++++|+++..++..+.|....      ++++|..++...+. ...+|.|+..|||
T Consensus         2 ~v~dLFsG~Gg~~~gl~~~--G~~~v~a~e~~~~a~~~~~~N~~~~------~~~~Di~~~~~~~~-~~~~D~l~~gpPC   72 (275)
T cd00315           2 RVIDLFAGIGGFRLGLEKA--GFEIVAANEIDKSAAETYEANFPNK------LIEGDITKIDEKDF-IPDIDLLTGGFPC   72 (275)
T ss_pred             cEEEEccCcchHHHHHHHc--CCEEEEEEeCCHHHHHHHHHhCCCC------CccCccccCchhhc-CCCCCEEEeCCCC
Confidence            6899999999998877654  2446889999999999999987421      56788888765431 2245679999999


Q ss_pred             ccc
Q 019802          324 MII  326 (335)
Q Consensus       324 s~~  326 (335)
                      -+-
T Consensus        73 q~f   75 (275)
T cd00315          73 QPF   75 (275)
T ss_pred             hhh
Confidence            743

Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.

>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []

Probab=97.17  E-value=0.00051  Score=60.78  Aligned_cols=91  Identities=25%  Similarity=0.292  Sum_probs=57.2

Q ss_pred             HHHcCCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHH-------HhCC--CcEEEEeccCCCC
Q 019802          234 AAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIK-------LSGA--ANIEVLHGDFLNL  304 (335)
Q Consensus       234 ~~~l~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~-------~~g~--~ni~~~~~D~~~~  304 (335)
                      ...+++.+++..+|+|||.|...++.|... +-.+.+++|+.+...+.++.+.+       ..|.  ..+.+.++|+.+.
T Consensus        35 l~~~~l~~~dvF~DlGSG~G~~v~~aal~~-~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~gdfl~~  113 (205)
T PF08123_consen   35 LDELNLTPDDVFYDLGSGVGNVVFQAALQT-GCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIHGDFLDP  113 (205)
T ss_dssp             HHHTT--TT-EEEEES-TTSHHHHHHHHHH---SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEECS-TTTH
T ss_pred             HHHhCCCCCCEEEECCCCCCHHHHHHHHHc-CCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeeccCcccc
Confidence            356788899999999999999999888665 34579999999998877765433       3444  4588889998775


Q ss_pred             CCCCCCCceEEEEEEeccccc
Q 019802          305 DPKDPAYSEVSLIFCIFTWMI  325 (335)
Q Consensus       305 ~~~~~~fd~V~~IllD~~cs~  325 (335)
                      +....-+...+.||++-.|-.
T Consensus       114 ~~~~~~~s~AdvVf~Nn~~F~  134 (205)
T PF08123_consen  114 DFVKDIWSDADVVFVNNTCFD  134 (205)
T ss_dssp             HHHHHHGHC-SEEEE--TTT-
T ss_pred             HhHhhhhcCCCEEEEeccccC
Confidence            532222345667999877644

H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....

>KOG2782 consensus Putative SAM dependent methyltransferases [General function prediction only]

Probab=97.15  E-value=0.00025  Score=62.20  Aligned_cols=91  Identities=14%  Similarity=0.093  Sum_probs=66.2

Q ss_pred             HHHHcCCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCC------
Q 019802          233 VAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDP------  306 (335)
Q Consensus       233 ~~~~l~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~~------  306 (335)
                      +.+.+.|.+|...+||.-|.||.|..+.+. .++.+++|+|.++-.-+++......+-.+.+..+.+.+.+++.      
T Consensus        35 vl~~lspv~g~sf~DmTfGagGHt~~ilqk-~se~k~yalDrDP~A~~La~~~s~el~~~~l~a~Lg~Fs~~~~l~~~~g  113 (303)
T KOG2782|consen   35 VLDILSPVRGRSFVDMTFGAGGHTSSILQK-HSELKNYALDRDPVARKLAHFHSDELMHPTLKAVLGNFSYIKSLIADTG  113 (303)
T ss_pred             HHHHcCCCCCceEEEEeccCCcchHHHHHh-CcHhhhhhhccChHHHHHHHHhhHhhcchhHHHHHhhhHHHHHHHHHhC
Confidence            467889999999999999999999999987 4568999999999888777666543322233334444444431      


Q ss_pred             -CCCCCceEEEEEEeccccccc
Q 019802          307 -KDPAYSEVSLIFCIFTWMIIM  327 (335)
Q Consensus       307 -~~~~fd~V~~IllD~~cs~~g  327 (335)
                       .+.++   |.||+|++||+--
T Consensus       114 l~~~~v---DGiLmDlGcSSMQ  132 (303)
T KOG2782|consen  114 LLDVGV---DGILMDLGCSSMQ  132 (303)
T ss_pred             CCcCCc---ceEEeecCccccc
Confidence             23444   5699999999643

>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]

Probab=97.13  E-value=0.0015  Score=55.29  Aligned_cols=71  Identities=20%  Similarity=0.310  Sum_probs=61.0

Q ss_pred             HHHHHHHcCCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCC
Q 019802          230 SSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLD  305 (335)
Q Consensus       230 s~l~~~~l~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~  305 (335)
                      ++.++..+++..|--||++|.|+|-.|-.+.+++-....++++|.|.+=...+.+...     .++++++|+.++.
T Consensus        37 A~~M~s~I~pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~p-----~~~ii~gda~~l~  107 (194)
T COG3963          37 ARKMASVIDPESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLYP-----GVNIINGDAFDLR  107 (194)
T ss_pred             HHHHHhccCcccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhCC-----CccccccchhhHH
Confidence            4555667788999999999999999999999988777899999999999988877644     4668999998887

>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised

Probab=97.13  E-value=0.0011  Score=59.61  Aligned_cols=86  Identities=29%  Similarity=0.389  Sum_probs=58.0

Q ss_pred             HHHHHHHcCCCCCC--EEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCC---------CcEEEEe
Q 019802          230 SSMVAAALAPKPGW--KVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGA---------ANIEVLH  298 (335)
Q Consensus       230 s~l~~~~l~~~~g~--~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~---------~ni~~~~  298 (335)
                      .+.++.+++.++|.  +|||+.+|-|.-++.+|..   +++|+++|.|+-....++.-+++..-         .+|++++
T Consensus        62 ~~~l~kA~Glk~~~~~~VLDaTaGLG~Da~vlA~~---G~~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~  138 (234)
T PF04445_consen   62 GDPLAKAVGLKPGMRPSVLDATAGLGRDAFVLASL---GCKVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIH  138 (234)
T ss_dssp             GSHHHHHTT-BTTB---EEETT-TTSHHHHHHHHH---T--EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEE
T ss_pred             ccHHHHHhCCCCCCCCEEEECCCcchHHHHHHHcc---CCeEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEc
Confidence            34567777777774  8999999999999999976   36899999999999888877766422         2599999


Q ss_pred             ccCCCCCC-CCCCCceEEEEEEec
Q 019802          299 GDFLNLDP-KDPAYSEVSLIFCIF  321 (335)
Q Consensus       299 ~D~~~~~~-~~~~fd~V~~IllD~  321 (335)
                      +|+.++-. .+.+||   +|.+||
T Consensus       139 ~d~~~~L~~~~~s~D---VVY~DP  159 (234)
T PF04445_consen  139 GDALEYLRQPDNSFD---VVYFDP  159 (234)
T ss_dssp             S-CCCHCCCHSS--S---EEEE--
T ss_pred             CCHHHHHhhcCCCCC---EEEECC
Confidence            99988543 345666   599995

; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.

>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=97.12  E-value=0.004  Score=57.84  Aligned_cols=78  Identities=15%  Similarity=0.137  Sum_probs=54.3

Q ss_pred             HHHcCCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCc-EEEEeccCCCCCCCCCCCc
Q 019802          234 AAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAAN-IEVLHGDFLNLDPKDPAYS  312 (335)
Q Consensus       234 ~~~l~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~n-i~~~~~D~~~~~~~~~~fd  312 (335)
                      ...+.+-.|.+|||+|||.|..+..|+..  +...|+++|.+..-+-..+---+-+|.++ +..+-.-.++++. .+.||
T Consensus       108 ~p~l~~L~gk~VLDIGC~nGY~~frM~~~--GA~~ViGiDP~~lf~~QF~~i~~~lg~~~~~~~lplgvE~Lp~-~~~FD  184 (315)
T PF08003_consen  108 LPHLPDLKGKRVLDIGCNNGYYSFRMLGR--GAKSVIGIDPSPLFYLQFEAIKHFLGQDPPVFELPLGVEDLPN-LGAFD  184 (315)
T ss_pred             HhhhCCcCCCEEEEecCCCcHHHHHHhhc--CCCEEEEECCChHHHHHHHHHHHHhCCCccEEEcCcchhhccc-cCCcC
Confidence            34455678999999999999999999876  45689999998876655444334455443 3333345566666 67798


Q ss_pred             eE
Q 019802          313 EV  314 (335)
Q Consensus       313 ~V  314 (335)
                      .|
T Consensus       185 tV  186 (315)
T PF08003_consen  185 TV  186 (315)
T ss_pred             EE
Confidence            64

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification

>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised

Probab=97.10  E-value=0.0014  Score=58.85  Aligned_cols=110  Identities=14%  Similarity=0.119  Sum_probs=61.4

Q ss_pred             CcccccceEEecCchHHHHHHHcC--CCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCC
Q 019802          215 HPLIVNGCVFLQGKASSMVAAALA--PKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAA  292 (335)
Q Consensus       215 ~~~~~~g~~~iQd~~s~l~~~~l~--~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~  292 (335)
                      ...|.+++.+....-.... .++.  --.|.+||-+|  -+..+...+.+.+...+|+.+|++++.++.+++.+++.|++
T Consensus        17 ~~~~DQ~~~T~eT~~~Ra~-~~~~~gdL~gk~il~lG--DDDLtSlA~al~~~~~~I~VvDiDeRll~fI~~~a~~~gl~   93 (243)
T PF01861_consen   17 DVELDQGYATPETTLRRAA-LMAERGDLEGKRILFLG--DDDLTSLALALTGLPKRITVVDIDERLLDFINRVAEEEGLP   93 (243)
T ss_dssp             -GGGT---B-HHHHHHHHH-HHHHTT-STT-EEEEES---TT-HHHHHHHHT--SEEEEE-S-HHHHHHHHHHHHHHT--
T ss_pred             ccccccccccHHHHHHHHH-HHHhcCcccCCEEEEEc--CCcHHHHHHHhhCCCCeEEEEEcCHHHHHHHHHHHHHcCCc
Confidence            3456777777655433221 1121  23578898665  66666655555566679999999999999999999999997


Q ss_pred             cEEEEeccCCCCCCCC--CCCceEEEEEEeccccccccccc
Q 019802          293 NIEVLHGDFLNLDPKD--PAYSEVSLIFCIFTWMIIMFHGF  331 (335)
Q Consensus       293 ni~~~~~D~~~~~~~~--~~fd~V~~IllD~~cs~~g~~~~  331 (335)
                       |++.+.|+++.-|..  +.||   +++.|||.+..|+.-|
T Consensus        94 -i~~~~~DlR~~LP~~~~~~fD---~f~TDPPyT~~G~~LF  130 (243)
T PF01861_consen   94 -IEAVHYDLRDPLPEELRGKFD---VFFTDPPYTPEGLKLF  130 (243)
T ss_dssp             -EEEE---TTS---TTTSS-BS---EEEE---SSHHHHHHH
T ss_pred             -eEEEEecccccCCHHHhcCCC---EEEeCCCCCHHHHHHH
Confidence             999999999865543  5677   4999999999988654

All the members are 350-400 amino acids long.; PDB: 2QM3_A.

>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]

Probab=97.08  E-value=0.00074  Score=58.04  Aligned_cols=77  Identities=17%  Similarity=0.245  Sum_probs=55.5

Q ss_pred             CCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEec-cCCCCCC------CCCCCc
Q 019802          240 KPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHG-DFLNLDP------KDPAYS  312 (335)
Q Consensus       240 ~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~-D~~~~~~------~~~~fd  312 (335)
                      .|+++|||+|||||..+-..-++.+++|.|.++|+-.-           .....+.++++ |+++...      ..+. -
T Consensus        68 ~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh~-----------~p~~Ga~~i~~~dvtdp~~~~ki~e~lp~-r  135 (232)
T KOG4589|consen   68 RPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLHI-----------EPPEGATIIQGNDVTDPETYRKIFEALPN-R  135 (232)
T ss_pred             CCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeeec-----------cCCCCcccccccccCCHHHHHHHHHhCCC-C
Confidence            57999999999999999999999999999999998421           12233455665 6665432      1111 3


Q ss_pred             eEEEEEEecccccccc
Q 019802          313 EVSLIFCIFTWMIIMF  328 (335)
Q Consensus       313 ~V~~IllD~~cs~~g~  328 (335)
                      .|++|+-|+.-..+|+
T Consensus       136 ~VdvVlSDMapnaTGv  151 (232)
T KOG4589|consen  136 PVDVVLSDMAPNATGV  151 (232)
T ss_pred             cccEEEeccCCCCcCc
Confidence            5788998977777776

>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes

Probab=97.06  E-value=0.0015  Score=59.26  Aligned_cols=67  Identities=27%  Similarity=0.311  Sum_probs=48.0

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCceEEEEEE
Q 019802          241 PGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVSLIFC  319 (335)
Q Consensus       241 ~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~~~~~~fd~V~~Ill  319 (335)
                      ...++||+|||-|+.|.+++....   +|+|.|.|..|..++++    .|.+   ++  |..++...+..||.|.+.=|
T Consensus        94 ~~~~lLDlGAGdG~VT~~l~~~f~---~v~aTE~S~~Mr~rL~~----kg~~---vl--~~~~w~~~~~~fDvIscLNv  160 (265)
T PF05219_consen   94 KDKSLLDLGAGDGEVTERLAPLFK---EVYATEASPPMRWRLSK----KGFT---VL--DIDDWQQTDFKFDVISCLNV  160 (265)
T ss_pred             cCCceEEecCCCcHHHHHHHhhcc---eEEeecCCHHHHHHHHh----CCCe---EE--ehhhhhccCCceEEEeehhh
Confidence            356899999999999999999864   59999999998666554    4663   22  33334444556887666543

The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.

>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes

Probab=96.96  E-value=0.0021  Score=57.52  Aligned_cols=80  Identities=28%  Similarity=0.419  Sum_probs=58.6

Q ss_pred             cCCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHH------------hCCCcEEEEeccCCCC
Q 019802          237 LAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKL------------SGAANIEVLHGDFLNL  304 (335)
Q Consensus       237 l~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~------------~g~~ni~~~~~D~~~~  304 (335)
                      +..+++.+||+-|||.|.-...||++   ...|+++|+|+..++.+.+....            ....+|++.++|+.++
T Consensus        33 l~~~~~~rvLvPgCG~g~D~~~La~~---G~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~l  109 (218)
T PF05724_consen   33 LALKPGGRVLVPGCGKGYDMLWLAEQ---GHDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDFFEL  109 (218)
T ss_dssp             HTTSTSEEEEETTTTTSCHHHHHHHT---TEEEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-TTTG
T ss_pred             cCCCCCCeEEEeCCCChHHHHHHHHC---CCeEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEEcccccC
Confidence            44678889999999999999999987   46999999999999998432211            1123689999999998


Q ss_pred             CCCC-CCCceEEEEEEeccc
Q 019802          305 DPKD-PAYSEVSLIFCIFTW  323 (335)
Q Consensus       305 ~~~~-~~fd~V~~IllD~~c  323 (335)
                      ++.. +.||    ++.|=.|
T Consensus       110 ~~~~~g~fD----~iyDr~~  125 (218)
T PF05724_consen  110 PPEDVGKFD----LIYDRTF  125 (218)
T ss_dssp             GGSCHHSEE----EEEECSS
T ss_pred             ChhhcCCce----EEEEecc
Confidence            8754 3677    4456333

Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.

>COG3897 Predicted methyltransferase [General function prediction only]

Probab=96.94  E-value=0.0015  Score=56.66  Aligned_cols=77  Identities=21%  Similarity=0.346  Sum_probs=60.3

Q ss_pred             HHHHHHcCCC----CCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCC
Q 019802          231 SMVAAALAPK----PGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDP  306 (335)
Q Consensus       231 ~l~~~~l~~~----~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~~  306 (335)
                      +..+..++-.    .|.+|||+|+|+|--++..+..  +...|++.|+.+.....++-|.+..|+ +|.++..|... + 
T Consensus        65 ~~lAR~i~~~PetVrgkrVLd~gagsgLvaIAaa~a--GA~~v~a~d~~P~~~~ai~lNa~angv-~i~~~~~d~~g-~-  139 (218)
T COG3897          65 QVLARYIDDHPETVRGKRVLDLGAGSGLVAIAAARA--GAAEVVAADIDPWLEQAIRLNAAANGV-SILFTHADLIG-S-  139 (218)
T ss_pred             HHHHHHHhcCccccccceeeecccccChHHHHHHHh--hhHHHHhcCCChHHHHHhhcchhhccc-eeEEeeccccC-C-
Confidence            3445544433    3899999999999999877655  457899999999999999999999997 68888888866 2 


Q ss_pred             CCCCCce
Q 019802          307 KDPAYSE  313 (335)
Q Consensus       307 ~~~~fd~  313 (335)
                       ...||.
T Consensus       140 -~~~~Dl  145 (218)
T COG3897         140 -PPAFDL  145 (218)
T ss_pred             -CcceeE
Confidence             344764

>KOG3010 consensus Methyltransferase [General function prediction only]

Probab=96.86  E-value=0.0014  Score=58.61  Aligned_cols=80  Identities=10%  Similarity=0.147  Sum_probs=49.4

Q ss_pred             HHHHHcCCCCCC-EEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCC-CcEEEEeccCCCCCCCCC
Q 019802          232 MVAAALAPKPGW-KVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGA-ANIEVLHGDFLNLDPKDP  309 (335)
Q Consensus       232 l~~~~l~~~~g~-~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~-~ni~~~~~D~~~~~~~~~  309 (335)
                      +.-.+....++. .++|+|||+|--+..+++...   +|+|.|+|+.||+.+++-...--+ ....+...+..++...++
T Consensus        23 w~~~ia~~~~~h~~a~DvG~G~Gqa~~~iae~~k---~VIatD~s~~mL~~a~k~~~~~y~~t~~~ms~~~~v~L~g~e~   99 (261)
T KOG3010|consen   23 WFKKIASRTEGHRLAWDVGTGNGQAARGIAEHYK---EVIATDVSEAMLKVAKKHPPVTYCHTPSTMSSDEMVDLLGGEE   99 (261)
T ss_pred             HHHHHHhhCCCcceEEEeccCCCcchHHHHHhhh---hheeecCCHHHHHHhhcCCCcccccCCccccccccccccCCCc
Confidence            334444455555 899999999966667777743   699999999999987764332111 112333334444443455


Q ss_pred             CCceE
Q 019802          310 AYSEV  314 (335)
Q Consensus       310 ~fd~V  314 (335)
                      +.|.|
T Consensus       100 SVDlI  104 (261)
T KOG3010|consen  100 SVDLI  104 (261)
T ss_pred             ceeee
Confidence            55543

>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family

Probab=96.73  E-value=0.0045  Score=58.42  Aligned_cols=65  Identities=14%  Similarity=0.167  Sum_probs=52.9

Q ss_pred             CCCCEEEEEcCCCchHHHHHHHHcCC---CeEEEEEeCCHHHHHHHHHHHHHhCCCcEEE--EeccCCCC
Q 019802          240 KPGWKVLDACSAPGNKTVHLAALMKG---KGKIVACELNKERVRRLKDTIKLSGAANIEV--LHGDFLNL  304 (335)
Q Consensus       240 ~~g~~VLD~cagpG~kt~~la~~~~~---~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~--~~~D~~~~  304 (335)
                      .++..++|+|||.|.||..|.+.+..   ....+++|+|...|+.+.+++..-.++.+.+  +++|+.+.
T Consensus        75 ~~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~p~l~v~~l~gdy~~~  144 (319)
T TIGR03439        75 PSGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNFSHVRCAGLLGTYDDG  144 (319)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccCCCeEEEEEEecHHHH
Confidence            46779999999999999998887642   3578999999999999999998445555555  88988663

This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).

>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2

Probab=96.73  E-value=0.0035  Score=60.60  Aligned_cols=83  Identities=25%  Similarity=0.243  Sum_probs=60.9

Q ss_pred             CCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCc--EEEEeccCCCCCC-CCCCCceEEEEE
Q 019802          242 GWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAAN--IEVLHGDFLNLDP-KDPAYSEVSLIF  318 (335)
Q Consensus       242 g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~n--i~~~~~D~~~~~~-~~~~fd~V~~Il  318 (335)
                      +-+|||.-||+|--++..+.-+++..+|++.|+|+..++.+++|++..|++.  +++.+.|+..+-. ....||   .|=
T Consensus        50 ~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N~~~~~~~~v~~~DAn~ll~~~~~~fD---~ID  126 (377)
T PF02005_consen   50 PIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELNGLEDERIEVSNMDANVLLYSRQERFD---VID  126 (377)
T ss_dssp             -EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHCT-SGCCEEEEES-HHHHHCHSTT-EE---EEE
T ss_pred             CceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhccccCceEEEehhhHHHHhhhccccCC---EEE
Confidence            4589999999999999999887666799999999999999999999999976  8999999987653 234455   577


Q ss_pred             Eeccccccc
Q 019802          319 CIFTWMIIM  327 (335)
Q Consensus       319 lD~~cs~~g  327 (335)
                      +||..|.+-
T Consensus       127 lDPfGSp~p  135 (377)
T PF02005_consen  127 LDPFGSPAP  135 (377)
T ss_dssp             E--SS--HH
T ss_pred             eCCCCCccH
Confidence            899888654

1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.

>PLN02823 spermine synthase

Probab=96.71  E-value=0.0069  Score=57.64  Aligned_cols=78  Identities=15%  Similarity=0.220  Sum_probs=60.7

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHh----CCCcEEEEeccCCCCCC-CCCCCceEE
Q 019802          241 PGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLS----GAANIEVLHGDFLNLDP-KDPAYSEVS  315 (335)
Q Consensus       241 ~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~----g~~ni~~~~~D~~~~~~-~~~~fd~V~  315 (335)
                      ...+||.+|.|.|+.+..+... .+..+|+++|+++..++.+++.+...    .-++++++.+|+..+-. ....||   
T Consensus       103 ~pk~VLiiGgG~G~~~re~l~~-~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~~~~yD---  178 (336)
T PLN02823        103 NPKTVFIMGGGEGSTAREVLRH-KTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKRDEKFD---  178 (336)
T ss_pred             CCCEEEEECCCchHHHHHHHhC-CCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhCCCCcc---
Confidence            3468999999999999888764 33468999999999999999987643    23569999999988543 334566   


Q ss_pred             EEEEecc
Q 019802          316 LIFCIFT  322 (335)
Q Consensus       316 ~IllD~~  322 (335)
                      .|++|.+
T Consensus       179 vIi~D~~  185 (336)
T PLN02823        179 VIIGDLA  185 (336)
T ss_pred             EEEecCC
Confidence            5899964

>KOG2361 consensus Predicted methyltransferase [General function prediction only]

Probab=96.68  E-value=0.0015  Score=58.46  Aligned_cols=102  Identities=16%  Similarity=0.270  Sum_probs=69.5

Q ss_pred             CcccccceEEecCchHHHHHHHcCCCCCCEEEEEcCCCchHHHHHHHHcCC-CeEEEEEeCCHHHHHHHHHHHHHhCCCc
Q 019802          215 HPLIVNGCVFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKG-KGKIVACELNKERVRRLKDTIKLSGAAN  293 (335)
Q Consensus       215 ~~~~~~g~~~iQd~~s~l~~~~l~~~~g~~VLD~cagpG~kt~~la~~~~~-~g~i~a~D~~~~rl~~~~~~~~~~g~~n  293 (335)
                      ...|++-.|..++...-+..   +-++.++||++|||-|+...-+.+--++ +-+|+|+|.|+..++.++++-.... ++
T Consensus        48 ~rFfkdR~wL~~Efpel~~~---~~~~~~~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~e-~~  123 (264)
T KOG2361|consen   48 NRFFKDRNWLLREFPELLPV---DEKSAETILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYDE-SR  123 (264)
T ss_pred             ccccchhHHHHHhhHHhhCc---cccChhhheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccch-hh
Confidence            34456655555554322211   1122238999999999999988765432 3799999999999999999877544 45


Q ss_pred             EEEEeccCCCCC----CCCCCCceEEEEEEe
Q 019802          294 IEVLHGDFLNLD----PKDPAYSEVSLIFCI  320 (335)
Q Consensus       294 i~~~~~D~~~~~----~~~~~fd~V~~IllD  320 (335)
                      +...+.|.....    +..+++|.++.|++-
T Consensus       124 ~~afv~Dlt~~~~~~~~~~~svD~it~IFvL  154 (264)
T KOG2361|consen  124 VEAFVWDLTSPSLKEPPEEGSVDIITLIFVL  154 (264)
T ss_pred             hcccceeccchhccCCCCcCccceEEEEEEE
Confidence            666667765543    345688888888874

>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]

Probab=96.67  E-value=0.0079  Score=56.03  Aligned_cols=87  Identities=20%  Similarity=0.293  Sum_probs=64.1

Q ss_pred             hHHHHHHHcCCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhC-CC-----cEEEEeccCC
Q 019802          229 ASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSG-AA-----NIEVLHGDFL  302 (335)
Q Consensus       229 ~s~l~~~~l~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g-~~-----ni~~~~~D~~  302 (335)
                      -|+|+-...  ++++.++|+|||-||-....-..  +-+.++++||.+--++.++++.+.+- ..     .+.++.+|..
T Consensus       107 Ks~LI~~y~--~~~~~~~~LgCGKGGDLlKw~kA--gI~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~  182 (389)
T KOG1975|consen  107 KSVLINLYT--KRGDDVLDLGCGKGGDLLKWDKA--GIGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCF  182 (389)
T ss_pred             HHHHHHHHh--ccccccceeccCCcccHhHhhhh--cccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccc
Confidence            366776655  67999999999999998765433  34689999999998988888766532 11     2678899985


Q ss_pred             C------CCCCCCCCceEEEEEE
Q 019802          303 N------LDPKDPAYSEVSLIFC  319 (335)
Q Consensus       303 ~------~~~~~~~fd~V~~Ill  319 (335)
                      .      +++.+++||.|.+-|+
T Consensus       183 ~~~l~d~~e~~dp~fDivScQF~  205 (389)
T KOG1975|consen  183 KERLMDLLEFKDPRFDIVSCQFA  205 (389)
T ss_pred             hhHHHHhccCCCCCcceeeeeee
Confidence            5      3345666998887776

>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins

Probab=96.64  E-value=0.008  Score=53.19  Aligned_cols=59  Identities=27%  Similarity=0.314  Sum_probs=49.7

Q ss_pred             EEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCc-EEEEeccCCCC
Q 019802          245 VLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAAN-IEVLHGDFLNL  304 (335)
Q Consensus       245 VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~n-i~~~~~D~~~~  304 (335)
                      |.|+||--|.....|.+. +...+++|+|++++=++.+++++++.|+.+ |++..+|+...
T Consensus         1 vaDIGtDHgyLpi~L~~~-~~~~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL~~   60 (205)
T PF04816_consen    1 VADIGTDHGYLPIYLLKN-GKAPKAIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDGLEV   60 (205)
T ss_dssp             EEEET-STTHHHHHHHHT-TSEEEEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SGGGG
T ss_pred             CceeccchhHHHHHHHhc-CCCCEEEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCcccc
Confidence            689999999999999987 344589999999999999999999999855 99999998663

; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.

>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes

Probab=96.57  E-value=0.0036  Score=55.09  Aligned_cols=60  Identities=17%  Similarity=0.330  Sum_probs=43.3

Q ss_pred             chHHHHHHHcCCCC---CCEEEEEcCCCchHHHHHHHHcCCC-eEEEEEeCCHHHHHHHHHHHH
Q 019802          228 KASSMVAAALAPKP---GWKVLDACSAPGNKTVHLAALMKGK-GKIVACELNKERVRRLKDTIK  287 (335)
Q Consensus       228 ~~s~l~~~~l~~~~---g~~VLD~cagpG~kt~~la~~~~~~-g~i~a~D~~~~rl~~~~~~~~  287 (335)
                      .+|-+....+...+   +-.++|-|||.|+..+.+.-+-++. ..|+|.|+++..++.+++|+.
T Consensus        35 LAsEi~qR~l~~l~~~~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL~   98 (246)
T PF11599_consen   35 LASEIFQRALHYLEGKGPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNLS   98 (246)
T ss_dssp             HHHHHHHHHHCTSSS-S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhcCCCCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhhh
Confidence            35555555555443   3489999999999999888664332 479999999999999988854

This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.

>KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.52  E-value=0.0029  Score=56.09  Aligned_cols=79  Identities=24%  Similarity=0.380  Sum_probs=57.7

Q ss_pred             CCEEEEEcCCCchHHHHHHHHcCC----Ce----EEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCC---CC
Q 019802          242 GWKVLDACSAPGNKTVHLAALMKG----KG----KIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKD---PA  310 (335)
Q Consensus       242 g~~VLD~cagpG~kt~~la~~~~~----~g----~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~~~~---~~  310 (335)
                      -.+|+|+||+||..+-.+++.+..    .+    +|+|+|+.+-           ..+..|..+++|.+......   ..
T Consensus        42 v~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~M-----------aPI~GV~qlq~DIT~~stae~Ii~h  110 (294)
T KOG1099|consen   42 VKRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPM-----------APIEGVIQLQGDITSASTAEAIIEH  110 (294)
T ss_pred             hhHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEecccC-----------CccCceEEeecccCCHhHHHHHHHH
Confidence            358999999999999999987642    22    3999998753           24556888999998865311   11


Q ss_pred             C--ceEEEEEEeccccccccccc
Q 019802          311 Y--SEVSLIFCIFTWMIIMFHGF  331 (335)
Q Consensus       311 f--d~V~~IllD~~cs~~g~~~~  331 (335)
                      |  ...+.|++|..--.+|+|+.
T Consensus       111 fggekAdlVvcDGAPDvTGlHd~  133 (294)
T KOG1099|consen  111 FGGEKADLVVCDGAPDVTGLHDL  133 (294)
T ss_pred             hCCCCccEEEeCCCCCccccccH
Confidence            2  24556999988888999974

>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]

Probab=96.28  E-value=0.017  Score=54.08  Aligned_cols=74  Identities=20%  Similarity=0.254  Sum_probs=56.7

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCC-CcEEEEeccCCCCCCCCCCCceEEEEEE
Q 019802          241 PGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGA-ANIEVLHGDFLNLDPKDPAYSEVSLIFC  319 (335)
Q Consensus       241 ~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~-~ni~~~~~D~~~~~~~~~~fd~V~~Ill  319 (335)
                      .|..|||+|||.|-.+...++.  +..+|+|++.| +|.+.++...+...+ +.|.++.+-.+++..+.    +||.|+-
T Consensus       177 ~~kiVlDVGaGSGILS~FAaqA--GA~~vYAvEAS-~MAqyA~~Lv~~N~~~~rItVI~GKiEdieLPE----k~DviIS  249 (517)
T KOG1500|consen  177 QDKIVLDVGAGSGILSFFAAQA--GAKKVYAVEAS-EMAQYARKLVASNNLADRITVIPGKIEDIELPE----KVDVIIS  249 (517)
T ss_pred             CCcEEEEecCCccHHHHHHHHh--CcceEEEEehh-HHHHHHHHHHhcCCccceEEEccCccccccCch----hccEEEe
Confidence            4778999999999999877765  45799999987 688888888776655 45889999888877643    3445554


Q ss_pred             ec
Q 019802          320 IF  321 (335)
Q Consensus       320 D~  321 (335)
                      .|
T Consensus       250 EP  251 (517)
T KOG1500|consen  250 EP  251 (517)
T ss_pred             cc
Confidence            43

>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases

Probab=96.19  E-value=0.017  Score=49.69  Aligned_cols=60  Identities=25%  Similarity=0.402  Sum_probs=41.3

Q ss_pred             CCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhC---CCcEEEEeccC
Q 019802          240 KPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSG---AANIEVLHGDF  301 (335)
Q Consensus       240 ~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g---~~ni~~~~~D~  301 (335)
                      ..+.+||++|||.|--+..++.+. +..+|++.|.++ -++.++.|++..+   -.++.+...|=
T Consensus        44 ~~~~~VLELGaG~Gl~gi~~a~~~-~~~~Vv~TD~~~-~l~~l~~Ni~~N~~~~~~~v~v~~L~W  106 (173)
T PF10294_consen   44 FRGKRVLELGAGTGLPGIAAAKLF-GAARVVLTDYNE-VLELLRRNIELNGSLLDGRVSVRPLDW  106 (173)
T ss_dssp             TTTSEEEETT-TTSHHHHHHHHT--T-SEEEEEE-S--HHHHHHHHHHTT--------EEEE--T
T ss_pred             cCCceEEEECCccchhHHHHHhcc-CCceEEEeccch-hhHHHHHHHHhccccccccccCcEEEe
Confidence            468899999999998888888773 457999999999 9999999999866   24566666554

They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.

>PLN02232 ubiquinone biosynthesis methyltransferase

Probab=96.18  E-value=0.0076  Score=51.05  Aligned_cols=48  Identities=19%  Similarity=0.278  Sum_probs=38.9

Q ss_pred             EEEeCCHHHHHHHHHHHHHhC---CCcEEEEeccCCCCCCCCCCCceEEEE
Q 019802          270 VACELNKERVRRLKDTIKLSG---AANIEVLHGDFLNLDPKDPAYSEVSLI  317 (335)
Q Consensus       270 ~a~D~~~~rl~~~~~~~~~~g---~~ni~~~~~D~~~~~~~~~~fd~V~~I  317 (335)
                      +++|+|+.|++.++++.+..+   ..+|+++++|+.+++..+++||.|...
T Consensus         1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~v~~~   51 (160)
T PLN02232          1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDLPFDDCEFDAVTMG   51 (160)
T ss_pred             CeEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhCCCCCCCeeEEEec
Confidence            479999999999988765432   357999999999999888889976543

>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes

Probab=96.13  E-value=0.065  Score=50.03  Aligned_cols=81  Identities=14%  Similarity=0.151  Sum_probs=48.9

Q ss_pred             CCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHh-CCC-cEEEEeccCC-CC-CCCCCCCceEEEE
Q 019802          242 GWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLS-GAA-NIEVLHGDFL-NL-DPKDPAYSEVSLI  317 (335)
Q Consensus       242 g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~-g~~-ni~~~~~D~~-~~-~~~~~~fd~V~~I  317 (335)
                      .-++||+|+|.-..=-.|+..+. +.+.+|.|+++.-++.+++|+++. ++. .|+++...-. .+ ..-...-+.++-.
T Consensus       103 ~v~glDIGTGAscIYpLLg~~~~-~W~fvaTdID~~sl~~A~~nv~~N~~L~~~I~l~~~~~~~~i~~~i~~~~e~~dft  181 (299)
T PF05971_consen  103 KVRGLDIGTGASCIYPLLGAKLY-GWSFVATDIDPKSLESARENVERNPNLESRIELRKQKNPDNIFDGIIQPNERFDFT  181 (299)
T ss_dssp             --EEEEES-TTTTHHHHHHHHHH---EEEEEES-HHHHHHHHHHHHHT-T-TTTEEEEE--ST-SSTTTSTT--S-EEEE
T ss_pred             ceEeecCCccHHHHHHHHhhhhc-CCeEEEecCCHHHHHHHHHHHHhccccccceEEEEcCCccccchhhhcccceeeEE
Confidence            45799999999988766766654 589999999999999999999998 775 4777654322 21 1111112456679


Q ss_pred             EEeccc
Q 019802          318 FCIFTW  323 (335)
Q Consensus       318 llD~~c  323 (335)
                      +|+||=
T Consensus       182 mCNPPF  187 (299)
T PF05971_consen  182 MCNPPF  187 (299)
T ss_dssp             EE----
T ss_pred             ecCCcc
Confidence            998874

The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.

>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes

Probab=96.12  E-value=0.029  Score=49.38  Aligned_cols=65  Identities=18%  Similarity=0.175  Sum_probs=54.9

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEE-EEeccCCCCCC
Q 019802          241 PGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIE-VLHGDFLNLDP  306 (335)
Q Consensus       241 ~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~-~~~~D~~~~~~  306 (335)
                      .+.+||+++||+|-.+.++|..+. .-.....|.++..+..+...+...|++|+. .+..|+...+.
T Consensus        25 ~~~~vLEiaSGtGqHa~~FA~~lP-~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~~w   90 (204)
T PF06080_consen   25 SGTRVLEIASGTGQHAVYFAQALP-HLTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSAPPW   90 (204)
T ss_pred             cCceEEEEcCCccHHHHHHHHHCC-CCEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCCCCC
Confidence            344699999999999999999986 478889999999999999999999998854 56777776643

The function of this family is unknown.

>KOG2899 consensus Predicted methyltransferase [General function prediction only]

Probab=96.11  E-value=0.0095  Score=53.41  Aligned_cols=47  Identities=17%  Similarity=0.273  Sum_probs=42.4

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHH
Q 019802          241 PGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKL  288 (335)
Q Consensus       241 ~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~  288 (335)
                      .+..+||+||-.|..|.+||..++. ..|+++||++..++.++++++.
T Consensus        58 ~~~~~LDIGCNsG~lt~~iak~F~~-r~iLGvDID~~LI~~Ark~~r~  104 (288)
T KOG2899|consen   58 EPKQALDIGCNSGFLTLSIAKDFGP-RRILGVDIDPVLIQRARKEIRF  104 (288)
T ss_pred             CcceeEeccCCcchhHHHHHHhhcc-ceeeEeeccHHHHHHHHHhccc
Confidence            3668999999999999999999875 6799999999999999999764

>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length

Probab=96.03  E-value=0.033  Score=51.43  Aligned_cols=65  Identities=17%  Similarity=0.217  Sum_probs=55.6

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHcCC-CeEEEEEeCCHHHHHHHHHHHHHhCCCcE-EEEeccCCCCC
Q 019802          241 PGWKVLDACSAPGNKTVHLAALMKG-KGKIVACELNKERVRRLKDTIKLSGAANI-EVLHGDFLNLD  305 (335)
Q Consensus       241 ~g~~VLD~cagpG~kt~~la~~~~~-~g~i~a~D~~~~rl~~~~~~~~~~g~~ni-~~~~~D~~~~~  305 (335)
                      ..-+|||+|||+|.--+-..+..+. .-.|.-.|.|+.-++..++.++..|+.+| ++.++|+.+..
T Consensus       135 ~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~~  201 (311)
T PF12147_consen  135 RPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFDRD  201 (311)
T ss_pred             CceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCHh
Confidence            4458999999999998877666543 35899999999999999999999999987 99999997743

It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.

>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=96.01  E-value=0.032  Score=53.07  Aligned_cols=80  Identities=24%  Similarity=0.209  Sum_probs=65.7

Q ss_pred             CCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCC-CCCCceEEEEEEe
Q 019802          242 GWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPK-DPAYSEVSLIFCI  320 (335)
Q Consensus       242 g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~~~-~~~fd~V~~IllD  320 (335)
                      ..+|+|.-+|+|-=++..+.-.+.. +++..|+|++..+.+++|++.....+..+++.|+..+-.. ...||.   |=+|
T Consensus        53 ~~~v~DalsatGiRgIRya~E~~~~-~v~lNDisp~Avelik~Nv~~N~~~~~~v~n~DAN~lm~~~~~~fd~---IDiD  128 (380)
T COG1867          53 PKRVLDALSATGIRGIRYAVETGVV-KVVLNDISPKAVELIKENVRLNSGEDAEVINKDANALLHELHRAFDV---IDID  128 (380)
T ss_pred             CeEEeecccccchhHhhhhhhcCcc-EEEEccCCHHHHHHHHHHHHhcCcccceeecchHHHHHHhcCCCccE---EecC
Confidence            6799999999999999998876554 8999999999999999999998566778888888776543 345664   6678


Q ss_pred             ccccc
Q 019802          321 FTWMI  325 (335)
Q Consensus       321 ~~cs~  325 (335)
                      |..|.
T Consensus       129 PFGSP  133 (380)
T COG1867         129 PFGSP  133 (380)
T ss_pred             CCCCC
Confidence            88774

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=95.94  E-value=0.006  Score=54.26  Aligned_cols=45  Identities=11%  Similarity=0.237  Sum_probs=37.9

Q ss_pred             CCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHH
Q 019802          238 APKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDT  285 (335)
Q Consensus       238 ~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~  285 (335)
                      +..+=.++||+|||+|-.+..|-.+.   .+++++|+|++|++.+.+.
T Consensus       122 ~~g~F~~~lDLGCGTGL~G~~lR~~a---~~ltGvDiS~nMl~kA~eK  166 (287)
T COG4976         122 DLGPFRRMLDLGCGTGLTGEALRDMA---DRLTGVDISENMLAKAHEK  166 (287)
T ss_pred             cCCccceeeecccCcCcccHhHHHHH---hhccCCchhHHHHHHHHhc
Confidence            44445799999999999999887764   4799999999999998765

>KOG1098 consensus Putative SAM-dependent rRNA methyltransferase SPB1 [RNA processing and modification; General function prediction only]

Probab=95.85  E-value=0.0075  Score=60.44  Aligned_cols=40  Identities=28%  Similarity=0.297  Sum_probs=35.8

Q ss_pred             CCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHH
Q 019802          239 PKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKER  278 (335)
Q Consensus       239 ~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~r  278 (335)
                      ++++..|||+||||||..-..++.|+..+.|+++|+-+-+
T Consensus        42 l~~a~~vlDLcaAPG~W~QVA~q~~pv~slivGvDl~pik   81 (780)
T KOG1098|consen   42 LEKAHVVLDLCAAPGGWLQVASQSMPVGSLIVGVDLVPIK   81 (780)
T ss_pred             ccccchheeeccCCcHHHHHHHHhCCCCceEEEeeeeecc
Confidence            4678899999999999999999999988999999997653

>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=95.67  E-value=0.084  Score=47.56  Aligned_cols=64  Identities=22%  Similarity=0.315  Sum_probs=50.3

Q ss_pred             HHHHHcCCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCC
Q 019802          232 MVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLN  303 (335)
Q Consensus       232 l~~~~l~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~  303 (335)
                      .+....+..+..+|+|+|.|.|..+..+++.. ++.+++.+|. +.-++.+++      .++|+++.+|+.+
T Consensus        91 ~~~~~~d~~~~~~vvDvGGG~G~~~~~l~~~~-P~l~~~v~Dl-p~v~~~~~~------~~rv~~~~gd~f~  154 (241)
T PF00891_consen   91 ILLEAFDFSGFKTVVDVGGGSGHFAIALARAY-PNLRATVFDL-PEVIEQAKE------ADRVEFVPGDFFD  154 (241)
T ss_dssp             HHHHHSTTTTSSEEEEET-TTSHHHHHHHHHS-TTSEEEEEE--HHHHCCHHH------TTTEEEEES-TTT
T ss_pred             hhhccccccCccEEEeccCcchHHHHHHHHHC-CCCcceeecc-Hhhhhcccc------ccccccccccHHh
Confidence            34455677777899999999999999999885 4689999998 777877777      5679999999983

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....

>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2

Probab=95.63  E-value=0.029  Score=51.10  Aligned_cols=79  Identities=16%  Similarity=0.137  Sum_probs=59.1

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCC----CcEEEEeccCCCCCCC-CC-CCceE
Q 019802          241 PGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGA----ANIEVLHGDFLNLDPK-DP-AYSEV  314 (335)
Q Consensus       241 ~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~----~ni~~~~~D~~~~~~~-~~-~fd~V  314 (335)
                      ...+||=+|.|.|+.+..+... .+-.+|+++|+++.-++.+++-+.....    ++++++.+|+..+-.. .. .||  
T Consensus        76 ~p~~VLiiGgG~G~~~~ell~~-~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~~~yD--  152 (246)
T PF01564_consen   76 NPKRVLIIGGGDGGTARELLKH-PPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQEEKYD--  152 (246)
T ss_dssp             ST-EEEEEESTTSHHHHHHTTS-TT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSSST-EE--
T ss_pred             CcCceEEEcCCChhhhhhhhhc-CCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhccCCccc--
Confidence            5789999999999999988765 3346899999999999999998876433    4799999999775432 22 455  


Q ss_pred             EEEEEeccc
Q 019802          315 SLIFCIFTW  323 (335)
Q Consensus       315 ~~IllD~~c  323 (335)
                       .|++|.+-
T Consensus       153 -vIi~D~~d  160 (246)
T PF01564_consen  153 -VIIVDLTD  160 (246)
T ss_dssp             -EEEEESSS
T ss_pred             -EEEEeCCC
Confidence             58888664

5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....

>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2

Probab=95.59  E-value=0.012  Score=55.09  Aligned_cols=72  Identities=25%  Similarity=0.337  Sum_probs=52.9

Q ss_pred             EEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCc-eEEEEEEecc
Q 019802          244 KVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYS-EVSLIFCIFT  322 (335)
Q Consensus       244 ~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~~~~~~fd-~V~~IllD~~  322 (335)
                      +++|++||.||.+.-+-+.  +--.+.|+|+++...+..+.|..       ....+|..++...  .+. .+|.++.=||
T Consensus         2 ~~~dlFsG~Gg~~~g~~~a--g~~~~~a~e~~~~a~~~y~~N~~-------~~~~~Di~~~~~~--~l~~~~D~l~ggpP   70 (335)
T PF00145_consen    2 KVIDLFSGIGGFSLGLEQA--GFEVVWAVEIDPDACETYKANFP-------EVICGDITEIDPS--DLPKDVDLLIGGPP   70 (335)
T ss_dssp             EEEEET-TTTHHHHHHHHT--TEEEEEEEESSHHHHHHHHHHHT-------EEEESHGGGCHHH--HHHHT-SEEEEE--
T ss_pred             cEEEEccCccHHHHHHHhc--CcEEEEEeecCHHHHHhhhhccc-------ccccccccccccc--cccccceEEEeccC
Confidence            6899999999999887665  23468899999999999999977       6788899888753  133 2667888999


Q ss_pred             cccc
Q 019802          323 WMII  326 (335)
Q Consensus       323 cs~~  326 (335)
                      |-+-
T Consensus        71 CQ~f   74 (335)
T PF00145_consen   71 CQGF   74 (335)
T ss_dssp             -TTT
T ss_pred             CceE
Confidence            9763

1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....

>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]

Probab=95.58  E-value=0.033  Score=51.73  Aligned_cols=83  Identities=13%  Similarity=0.152  Sum_probs=65.9

Q ss_pred             HcCCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhC----CCcEEEEeccCCCCCCCC-CC
Q 019802          236 ALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSG----AANIEVLHGDFLNLDPKD-PA  310 (335)
Q Consensus       236 ~l~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g----~~ni~~~~~D~~~~~~~~-~~  310 (335)
                      ...+.| .+||=+|-|.|+.+..+.... +-.+++.+|+++.-++.+++-+....    -+.++++..|+.++-... .+
T Consensus        72 ~ah~~p-k~VLiiGgGdG~tlRevlkh~-~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~~~  149 (282)
T COG0421          72 LAHPNP-KRVLIIGGGDGGTLREVLKHL-PVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCEEK  149 (282)
T ss_pred             hhCCCC-CeEEEECCCccHHHHHHHhcC-CcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhCCCc
Confidence            344556 599999999999999998874 45799999999999999999988765    466899999998866533 35


Q ss_pred             CceEEEEEEeccc
Q 019802          311 YSEVSLIFCIFTW  323 (335)
Q Consensus       311 fd~V~~IllD~~c  323 (335)
                      ||   +|++|...
T Consensus       150 fD---vIi~D~td  159 (282)
T COG0421         150 FD---VIIVDSTD  159 (282)
T ss_pred             CC---EEEEcCCC
Confidence            76   48888443

>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=95.57  E-value=0.023  Score=50.93  Aligned_cols=75  Identities=23%  Similarity=0.226  Sum_probs=49.9

Q ss_pred             CCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHH-HHHHHHHhCCCcEEEEeccCCCCCCCCCCCceEEEEE
Q 019802          240 KPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRR-LKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVSLIF  318 (335)
Q Consensus       240 ~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~-~~~~~~~~g~~ni~~~~~D~~~~~~~~~~fd~V~~Il  318 (335)
                      .+|..|||+||.+||+|-.+.+.  +..+|+|+|..-..+.- ++.     ...-+..-..++..+.+.+- .+.++.++
T Consensus        78 ~k~kv~LDiGsSTGGFTd~lLq~--gAk~VyavDVG~~Ql~~kLR~-----d~rV~~~E~tN~r~l~~~~~-~~~~d~~v  149 (245)
T COG1189          78 VKGKVVLDIGSSTGGFTDVLLQR--GAKHVYAVDVGYGQLHWKLRN-----DPRVIVLERTNVRYLTPEDF-TEKPDLIV  149 (245)
T ss_pred             CCCCEEEEecCCCccHHHHHHHc--CCcEEEEEEccCCccCHhHhc-----CCcEEEEecCChhhCCHHHc-ccCCCeEE
Confidence            36889999999999999988876  45799999997655432 221     11124445566666665431 23456677


Q ss_pred             Eecc
Q 019802          319 CIFT  322 (335)
Q Consensus       319 lD~~  322 (335)
                      +|..
T Consensus       150 ~DvS  153 (245)
T COG1189         150 IDVS  153 (245)
T ss_pred             EEee
Confidence            7753

>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=95.36  E-value=0.079  Score=49.03  Aligned_cols=48  Identities=17%  Similarity=0.151  Sum_probs=40.6

Q ss_pred             CCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHh
Q 019802          242 GWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLS  289 (335)
Q Consensus       242 g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~  289 (335)
                      ..+|||+|||||.-+-.+.+..+.-..++++|.|+.+++..+..++..
T Consensus        34 P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~   81 (274)
T PF09243_consen   34 PRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAG   81 (274)
T ss_pred             CceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhcc
Confidence            458999999999877777777776678999999999999988877754

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation

>PHA01634 hypothetical protein

Probab=95.27  E-value=0.14  Score=41.47  Aligned_cols=49  Identities=8%  Similarity=0.048  Sum_probs=43.1

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCC
Q 019802          241 PGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGA  291 (335)
Q Consensus       241 ~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~  291 (335)
                      .+.+|+|+||+-|.-++.++..  +..+|+|++.+++..+..++|++-..+
T Consensus        28 k~KtV~dIGA~iGdSaiYF~l~--GAK~Vva~E~~~kl~k~~een~k~nnI   76 (156)
T PHA01634         28 YQRTIQIVGADCGSSALYFLLR--GASFVVQYEKEEKLRKKWEEVCAYFNI   76 (156)
T ss_pred             cCCEEEEecCCccchhhHHhhc--CccEEEEeccCHHHHHHHHHHhhhhee
Confidence            5789999999999999988754  567999999999999999999887644

>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D

Probab=95.00  E-value=0.0023  Score=50.04  Aligned_cols=81  Identities=22%  Similarity=0.314  Sum_probs=26.4

Q ss_pred             EEEcCCCchHHHHHHHHcCCCe--EEEEEeCCHHHHHHHHHHHHHhCCC-cEEEEeccCCCCCCCCCCCceEEEEEEecc
Q 019802          246 LDACSAPGNKTVHLAALMKGKG--KIVACELNKERVRRLKDTIKLSGAA-NIEVLHGDFLNLDPKDPAYSEVSLIFCIFT  322 (335)
Q Consensus       246 LD~cagpG~kt~~la~~~~~~g--~i~a~D~~~~rl~~~~~~~~~~g~~-ni~~~~~D~~~~~~~~~~fd~V~~IllD~~  322 (335)
                      |++|+..|.-|.++++.+++.+  +++++|..+. .+..++.+++.++. +++++++|..+.-+... -..++.|++|..
T Consensus         1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~-~~~~~~~~~~~~~~~~~~~~~g~s~~~l~~~~-~~~~dli~iDg~   78 (106)
T PF13578_consen    1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPG-DEQAQEIIKKAGLSDRVEFIQGDSPDFLPSLP-DGPIDLIFIDGD   78 (106)
T ss_dssp             --------------------------EEEESS-------------GGG-BTEEEEES-THHHHHHHH-H--EEEEEEES-
T ss_pred             CccccccccccccccccccccccCCEEEEECCCc-ccccchhhhhcCCCCeEEEEEcCcHHHHHHcC-CCCEEEEEECCC
Confidence            6899999999999998877655  8999999986 55556666656664 59999999966432111 125667999986


Q ss_pred             cccccc
Q 019802          323 WMIIMF  328 (335)
Q Consensus       323 cs~~g~  328 (335)
                      =+..++
T Consensus        79 H~~~~~   84 (106)
T PF13578_consen   79 HSYEAV   84 (106)
T ss_dssp             --HHHH
T ss_pred             CCHHHH
Confidence            554444

>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]

Probab=94.95  E-value=0.23  Score=39.29  Aligned_cols=69  Identities=23%  Similarity=0.276  Sum_probs=47.5

Q ss_pred             EEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCC--CCCCC-CCCceE
Q 019802          245 VLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLN--LDPKD-PAYSEV  314 (335)
Q Consensus       245 VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~--~~~~~-~~fd~V  314 (335)
                      ++|+|||+|..+ .++........++++|+++.++...+......+...+.+...|...  ++... ..||.+
T Consensus        52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~  123 (257)
T COG0500          52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEGAGLGLVDFVVADALGGVLPFEDSASFDLV  123 (257)
T ss_pred             eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhhcCCCceEEEEeccccCCCCCCCCCceeEE
Confidence            999999999988 5555533223888999999999995555544222126788888776  55544 357754

>KOG2078 consensus tRNA modification enzyme [RNA processing and modification]

Probab=94.78  E-value=0.031  Score=53.91  Aligned_cols=64  Identities=30%  Similarity=0.343  Sum_probs=54.8

Q ss_pred             CCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCC--CcEEEEeccCCCCC
Q 019802          239 PKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGA--ANIEVLHGDFLNLD  305 (335)
Q Consensus       239 ~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~--~ni~~~~~D~~~~~  305 (335)
                      .++|+.|-|+|||-|-.+.-++..   ..+|+|.|.++.+++-++.|++..-+  .+|++++.|+...-
T Consensus       247 fk~gevv~D~FaGvGPfa~Pa~kK---~crV~aNDLNpesik~Lk~ni~lNkv~~~~iei~Nmda~~Fl  312 (495)
T KOG2078|consen  247 FKPGEVVCDVFAGVGPFALPAAKK---GCRVYANDLNPESIKWLKANIKLNKVDPSAIEIFNMDAKDFL  312 (495)
T ss_pred             cCCcchhhhhhcCcCccccchhhc---CcEEEecCCCHHHHHHHHHhccccccchhheeeecccHHHHh
Confidence            468999999999999999888765   48999999999999999999986655  34899999986643

>TIGR00675 dcm DNA-methyltransferase (dcm)

Probab=94.62  E-value=0.035  Score=52.43  Aligned_cols=72  Identities=18%  Similarity=0.313  Sum_probs=53.6

Q ss_pred             EEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCceEEEEEEecccc
Q 019802          245 VLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVSLIFCIFTWM  324 (335)
Q Consensus       245 VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~~~~~~fd~V~~IllD~~cs  324 (335)
                      |+|++||.||.+.-+-+.  +--.+.|+|+++...+..+.|..     + .+.++|..++...+  +..++.++.-|||-
T Consensus         1 vidLF~G~GG~~~Gl~~a--G~~~~~a~e~~~~a~~ty~~N~~-----~-~~~~~Di~~~~~~~--~~~~dvl~gg~PCq   70 (315)
T TIGR00675         1 FIDLFAGIGGIRLGFEQA--GFKCVFASEIDKYAQKTYEANFG-----N-KVPFGDITKISPSD--IPDFDILLGGFPCQ   70 (315)
T ss_pred             CEEEecCccHHHHHHHHc--CCeEEEEEeCCHHHHHHHHHhCC-----C-CCCccChhhhhhhh--CCCcCEEEecCCCc
Confidence            689999999999877654  23356789999999999999864     2 34567887776432  23466788899997


Q ss_pred             cc
Q 019802          325 II  326 (335)
Q Consensus       325 ~~  326 (335)
                      +-
T Consensus        71 ~f   72 (315)
T TIGR00675        71 PF   72 (315)
T ss_pred             cc
Confidence            53

All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2

Probab=94.14  E-value=0.21  Score=46.14  Aligned_cols=71  Identities=14%  Similarity=0.113  Sum_probs=43.9

Q ss_pred             CEEEEEcCCCchHHHHH-HHHcCCCeEEEEEeCCHHHHHHHHHHHH-HhCCC-cEEEEeccCCCCCCCCCCCce
Q 019802          243 WKVLDACSAPGNKTVHL-AALMKGKGKIVACELNKERVRRLKDTIK-LSGAA-NIEVLHGDFLNLDPKDPAYSE  313 (335)
Q Consensus       243 ~~VLD~cagpG~kt~~l-a~~~~~~g~i~a~D~~~~rl~~~~~~~~-~~g~~-ni~~~~~D~~~~~~~~~~fd~  313 (335)
                      .+|+=+|+||=-.|..+ +.....+..|+.+|+++...+.+++-++ .+|+. .++++++|+.+....-..||.
T Consensus       122 ~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~dl~~~Dv  195 (276)
T PF03059_consen  122 SRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVTYDLKEYDV  195 (276)
T ss_dssp             -EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-GG----SE
T ss_pred             ceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhccccccccCCE
Confidence            49999999999988754 4444445789999999999999999888 55653 489999999877644445764

5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.

>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=94.02  E-value=0.2  Score=46.99  Aligned_cols=77  Identities=21%  Similarity=0.198  Sum_probs=54.8

Q ss_pred             cccccceEEecCchHHH-HHHHcCCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcE
Q 019802          216 PLIVNGCVFLQGKASSM-VAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANI  294 (335)
Q Consensus       216 ~~~~~g~~~iQd~~s~l-~~~~l~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni  294 (335)
                      -.|.+|. .+|..+-.+ +.....+++|.+||=+||||=|..+.+....-+..+|+..|+++.|++.+++    +|.+.+
T Consensus       144 vs~eeGA-l~ePLsV~~HAcr~~~vk~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~----~Ga~~~  218 (354)
T KOG0024|consen  144 VSFEEGA-LIEPLSVGVHACRRAGVKKGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKK----FGATVT  218 (354)
T ss_pred             Cchhhcc-cccchhhhhhhhhhcCcccCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHH----hCCeEE
Confidence            3455664 344444322 2345678999999999999977777665544457899999999999999887    687654


Q ss_pred             EEE
Q 019802          295 EVL  297 (335)
Q Consensus       295 ~~~  297 (335)
                      ...
T Consensus       219 ~~~  221 (354)
T KOG0024|consen  219 DPS  221 (354)
T ss_pred             eec
Confidence            433

>PRK11524 putative methyltransferase; Provisional

Probab=94.00  E-value=0.12  Score=48.08  Aligned_cols=46  Identities=20%  Similarity=0.208  Sum_probs=38.3

Q ss_pred             CCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHH
Q 019802          240 KPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKL  288 (335)
Q Consensus       240 ~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~  288 (335)
                      .+|+.|||.++|+|..+... +.++  .+.+++|++++-++.++++++.
T Consensus       207 ~~GD~VLDPF~GSGTT~~AA-~~lg--R~~IG~Ei~~~Y~~~a~~Rl~~  252 (284)
T PRK11524        207 NPGDIVLDPFAGSFTTGAVA-KASG--RKFIGIEINSEYIKMGLRRLDV  252 (284)
T ss_pred             CCCCEEEECCCCCcHHHHHH-HHcC--CCEEEEeCCHHHHHHHHHHHHh
Confidence            68999999999998776544 4443  5799999999999999999864

>COG1568 Predicted methyltransferases [General function prediction only]

Probab=93.91  E-value=0.11  Score=47.65  Aligned_cols=86  Identities=17%  Similarity=0.173  Sum_probs=65.6

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCC--CCCceEEEEE
Q 019802          241 PGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKD--PAYSEVSLIF  318 (335)
Q Consensus       241 ~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~~~~--~~fd~V~~Il  318 (335)
                      .|..|+=+|  --..|...+.+.+-.-+|..+|++++-++..++-++.+|++||+.+..|.++.-|.+  ..||   +++
T Consensus       152 ~gK~I~vvG--DDDLtsia~aLt~mpk~iaVvDIDERli~fi~k~aee~g~~~ie~~~~Dlr~plpe~~~~kFD---vfi  226 (354)
T COG1568         152 EGKEIFVVG--DDDLTSIALALTGMPKRIAVVDIDERLIKFIEKVAEELGYNNIEAFVFDLRNPLPEDLKRKFD---VFI  226 (354)
T ss_pred             CCCeEEEEc--CchhhHHHHHhcCCCceEEEEechHHHHHHHHHHHHHhCccchhheeehhcccChHHHHhhCC---eee
Confidence            466787776  444444444444445689999999999999999999999999999999999976643  4677   366


Q ss_pred             Eeccccccccccc
Q 019802          319 CIFTWMIIMFHGF  331 (335)
Q Consensus       319 lD~~cs~~g~~~~  331 (335)
                      -|||-+-.|+.-|
T Consensus       227 TDPpeTi~alk~F  239 (354)
T COG1568         227 TDPPETIKALKLF  239 (354)
T ss_pred             cCchhhHHHHHHH
Confidence            7999887776544

>PRK10458 DNA cytosine methylase; Provisional

Probab=93.48  E-value=0.26  Score=49.05  Aligned_cols=80  Identities=14%  Similarity=0.189  Sum_probs=55.1

Q ss_pred             CCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCC-------------
Q 019802          242 GWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKD-------------  308 (335)
Q Consensus       242 g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~~~~-------------  308 (335)
                      .-+++|++||.||.+.-+-.. + --.|.++|+++...+..+.|...  ..+...+++|..++...+             
T Consensus        88 ~~~~iDLFsGiGGl~lGfe~a-G-~~~v~a~Eid~~A~~TY~~N~~~--~p~~~~~~~DI~~i~~~~~~~~~~~~~~~~~  163 (467)
T PRK10458         88 AFRFIDLFAGIGGIRRGFEAI-G-GQCVFTSEWNKHAVRTYKANWYC--DPATHRFNEDIRDITLSHKEGVSDEEAAEHI  163 (467)
T ss_pred             CceEEEeCcCccHHHHHHHHc-C-CEEEEEEechHHHHHHHHHHcCC--CCccceeccChhhCccccccccchhhhhhhh
Confidence            458999999999999887543 3 23678999999999999988531  122345566776665321             


Q ss_pred             -CCCceEEEEEEeccccc
Q 019802          309 -PAYSEVSLIFCIFTWMI  325 (335)
Q Consensus       309 -~~fd~V~~IllD~~cs~  325 (335)
                       ..+..++.++-=|||-+
T Consensus       164 ~~~~p~~DvL~gGpPCQ~  181 (467)
T PRK10458        164 RQHIPDHDVLLAGFPCQP  181 (467)
T ss_pred             hccCCCCCEEEEcCCCCc
Confidence             11224566777999974

>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like

Probab=93.48  E-value=0.14  Score=45.43  Aligned_cols=72  Identities=14%  Similarity=0.105  Sum_probs=48.0

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCceE
Q 019802          241 PGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEV  314 (335)
Q Consensus       241 ~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~~~~~~fd~V  314 (335)
                      ...+.||+|||-|..|-++...+  --+|..+|..++-++.+++.+...+.....+.+.-.+++.|....||.|
T Consensus        55 ~~~~alDcGAGIGRVTk~lLl~~--f~~VDlVEp~~~Fl~~a~~~l~~~~~~v~~~~~~gLQ~f~P~~~~YDlI  126 (218)
T PF05891_consen   55 KFNRALDCGAGIGRVTKGLLLPV--FDEVDLVEPVEKFLEQAKEYLGKDNPRVGEFYCVGLQDFTPEEGKYDLI  126 (218)
T ss_dssp             --SEEEEET-TTTHHHHHTCCCC---SEEEEEES-HHHHHHHHHHTCCGGCCEEEEEES-GGG----TT-EEEE
T ss_pred             CcceEEecccccchhHHHHHHHh--cCEeEEeccCHHHHHHHHHHhcccCCCcceEEecCHhhccCCCCcEeEE
Confidence            35689999999999999875432  3589999999999999998766533334678888888888876778753

; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.

>KOG3115 consensus Methyltransferase-like protein [General function prediction only]

Probab=93.46  E-value=0.12  Score=45.32  Aligned_cols=64  Identities=20%  Similarity=0.231  Sum_probs=53.1

Q ss_pred             CCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhC-------CCcEEEEeccCCCCCC
Q 019802          242 GWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSG-------AANIEVLHGDFLNLDP  306 (335)
Q Consensus       242 g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g-------~~ni~~~~~D~~~~~~  306 (335)
                      --.+.|+|||-||....++.+.+ +.-|.+++|..+-.+.++++++.++       ..|+.+...++..+.+
T Consensus        61 kvefaDIGCGyGGLlv~Lsp~fP-dtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr~namk~lp  131 (249)
T KOG3115|consen   61 KVEFADIGCGYGGLLMKLAPKFP-DTLILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISVLRTNAMKFLP  131 (249)
T ss_pred             cceEEeeccCccchhhhccccCc-cceeeeehhhHHHHHHHHHHHHHHhccccccccccceeeeccchhhcc
Confidence            34689999999999999999864 5789999999888888888888777       6788888877766554

>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]

Probab=93.41  E-value=0.35  Score=42.98  Aligned_cols=73  Identities=19%  Similarity=0.142  Sum_probs=58.8

Q ss_pred             CCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCC-cEEEEeccCCCCCCCCCCCce
Q 019802          240 KPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAA-NIEVLHGDFLNLDPKDPAYSE  313 (335)
Q Consensus       240 ~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~-ni~~~~~D~~~~~~~~~~fd~  313 (335)
                      +.+.++.|+||=-|..++.+... +....++|.|++++-++.+.+++++.++. .+.+..+|....-..+..+|.
T Consensus        15 ~~~~~iaDIGsDHAYLp~~Lv~~-~~~~~~va~eV~~gpl~~a~~~v~~~~l~~~i~vr~~dgl~~l~~~d~~d~   88 (226)
T COG2384          15 KQGARIADIGSDHAYLPIYLVKN-NPASTAVAGEVVPGPLESAIRNVKKNNLSERIDVRLGDGLAVLELEDEIDV   88 (226)
T ss_pred             HcCCceeeccCchhHhHHHHHhc-CCcceEEEeecccCHHHHHHHHHHhcCCcceEEEeccCCccccCccCCcCE
Confidence            45667999999999999998876 45578999999999999999999999874 488899998553333334664

>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]

Probab=93.29  E-value=0.17  Score=48.76  Aligned_cols=87  Identities=23%  Similarity=0.227  Sum_probs=70.7

Q ss_pred             HHHcCCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCc-EEEEeccCCCCCCCCCCCc
Q 019802          234 AAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAAN-IEVLHGDFLNLDPKDPAYS  312 (335)
Q Consensus       234 ~~~l~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~n-i~~~~~D~~~~~~~~~~fd  312 (335)
                      .......++..++|++||-|+-+..++..  ....++++|.++..+.+........++++ ..++.+|+.+.+++++.||
T Consensus       103 ~l~~~~~~~~~~~~~~~g~~~~~~~i~~f--~~~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~~~~~fedn~fd  180 (364)
T KOG1269|consen  103 ALRESCFPGSKVLDVGTGVGGPSRYIAVF--KKAGVVGLDNNAYEAFRANELAKKAYLDNKCNFVVADFGKMPFEDNTFD  180 (364)
T ss_pred             HHhhcCcccccccccCcCcCchhHHHHHh--ccCCccCCCcCHHHHHHHHHHHHHHHhhhhcceehhhhhcCCCCccccC
Confidence            33445678889999999999999999877  24689999999999999999888888755 4458899999999999999


Q ss_pred             eEEEEEEecccc
Q 019802          313 EVSLIFCIFTWM  324 (335)
Q Consensus       313 ~V~~IllD~~cs  324 (335)
                      .|.  ++|..|=
T Consensus       181 ~v~--~ld~~~~  190 (364)
T KOG1269|consen  181 GVR--FLEVVCH  190 (364)
T ss_pred             cEE--EEeeccc
Confidence            864  3466653

>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases

Probab=93.29  E-value=0.16  Score=44.61  Aligned_cols=43  Identities=23%  Similarity=0.351  Sum_probs=31.4

Q ss_pred             CCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHH
Q 019802          239 PKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKD  284 (335)
Q Consensus       239 ~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~  284 (335)
                      -.+|+.|||.+||+|..+.... .++  .+.+++|+++.-++.+++
T Consensus       189 t~~gdiVlDpF~GSGTT~~aa~-~l~--R~~ig~E~~~~y~~~a~~  231 (231)
T PF01555_consen  189 TNPGDIVLDPFAGSGTTAVAAE-ELG--RRYIGIEIDEEYCEIAKK  231 (231)
T ss_dssp             S-TT-EEEETT-TTTHHHHHHH-HTT---EEEEEESSHHHHHHHHH
T ss_pred             hccceeeehhhhccChHHHHHH-HcC--CeEEEEeCCHHHHHHhcC
Confidence            4679999999999998765444 443  579999999999988764

In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....

>KOG1253 consensus tRNA methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=93.17  E-value=0.036  Score=54.45  Aligned_cols=86  Identities=24%  Similarity=0.272  Sum_probs=71.1

Q ss_pred             CCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCc-EEEEeccCCCCCCC----CCCCceE
Q 019802          240 KPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAAN-IEVLHGDFLNLDPK----DPAYSEV  314 (335)
Q Consensus       240 ~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~n-i~~~~~D~~~~~~~----~~~fd~V  314 (335)
                      .++-+|||.-+|+|--++..|..+++-++|+|.|.++.-++..++|.+..++.+ ++..+.|+..+...    ...||. 
T Consensus       108 ~~~l~vLealsAtGlrslRya~El~~v~~v~AnD~~~~aV~~i~~Nv~~N~v~~ive~~~~DA~~lM~~~~~~~~~FDv-  186 (525)
T KOG1253|consen  108 EKSLRVLEALSATGLRSLRYAKELPGVRQVVANDLNENAVTSIQRNVELNGVEDIVEPHHSDANVLMYEHPMVAKFFDV-  186 (525)
T ss_pred             cCcchHHHHhhhhhHHHHHHHHHhcchhhhcccCCCHHHHHHHHhhhhhcCchhhcccccchHHHHHHhccccccccce-
Confidence            456789999999999999999999988999999999999999999999988865 67788888665432    345764 


Q ss_pred             EEEEEecccccccc
Q 019802          315 SLIFCIFTWMIIMF  328 (335)
Q Consensus       315 ~~IllD~~cs~~g~  328 (335)
                        |=|||..|.+-+
T Consensus       187 --IDLDPyGs~s~F  198 (525)
T KOG1253|consen  187 --IDLDPYGSPSPF  198 (525)
T ss_pred             --EecCCCCCccHH
Confidence              778988876544

>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases

Probab=93.01  E-value=0.38  Score=39.82  Aligned_cols=59  Identities=15%  Similarity=0.264  Sum_probs=42.8

Q ss_pred             EEEEEeCCHHHHHHHHHHHHHhCCC-cEEEEeccCCCCCCCCCCCceEEEEEEeccccccc
Q 019802          268 KIVACELNKERVRRLKDTIKLSGAA-NIEVLHGDFLNLDPKDPAYSEVSLIFCIFTWMIIM  327 (335)
Q Consensus       268 ~i~a~D~~~~rl~~~~~~~~~~g~~-ni~~~~~D~~~~~~~~~~fd~V~~IllD~~cs~~g  327 (335)
                      +|+|+|+.+..++..+++++..++. ++++++.+...+...-.. ..|++++++.+.-.-|
T Consensus         1 kVyaFDIQ~~Ai~~T~~rL~~~~~~~~v~li~~sHe~l~~~i~~-~~v~~~iFNLGYLPgg   60 (140)
T PF06962_consen    1 KVYAFDIQEEAIENTRERLEEAGLEDRVTLILDSHENLDEYIPE-GPVDAAIFNLGYLPGG   60 (140)
T ss_dssp             EEEEEES-HHHHHHHHHHHHHTT-GSGEEEEES-GGGGGGT--S---EEEEEEEESB-CTS
T ss_pred             CEEEEECHHHHHHHHHHHHHhcCCCCcEEEEECCHHHHHhhCcc-CCcCEEEEECCcCCCC
Confidence            5899999999999999999999985 499999999888753222 4688899987665444

; PDB: 3EEY_H 3LBY_A 3MTI_A.

>COG2933 Predicted SAM-dependent methyltransferase [General function prediction only]

Probab=92.69  E-value=0.28  Score=44.66  Aligned_cols=70  Identities=20%  Similarity=0.341  Sum_probs=51.8

Q ss_pred             CCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCceEEEEE
Q 019802          239 PKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVSLIF  318 (335)
Q Consensus       239 ~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~~~~~~fd~V~~Il  318 (335)
                      ..+|+.-.|+||+|||.|-+|..+   +-.|+|+|.-+-     .+++-..|  .|+-...|...+.|..   ..|+..+
T Consensus       209 L~~~M~avDLGAcPGGWTyqLVkr---~m~V~aVDng~m-----a~sL~dtg--~v~h~r~DGfk~~P~r---~~idWmV  275 (358)
T COG2933         209 LAPGMWAVDLGACPGGWTYQLVKR---NMRVYAVDNGPM-----AQSLMDTG--QVTHLREDGFKFRPTR---SNIDWMV  275 (358)
T ss_pred             hcCCceeeecccCCCccchhhhhc---ceEEEEeccchh-----hhhhhccc--ceeeeeccCcccccCC---CCCceEE
Confidence            357999999999999999988765   679999997642     23333344  3788889998888733   3466788


Q ss_pred             Eec
Q 019802          319 CIF  321 (335)
Q Consensus       319 lD~  321 (335)
                      ||.
T Consensus       276 CDm  278 (358)
T COG2933         276 CDM  278 (358)
T ss_pred             eeh
Confidence            884

>TIGR00497 hsdM type I restriction system adenine methylase (hsdM)

Probab=92.50  E-value=0.68  Score=46.65  Aligned_cols=103  Identities=15%  Similarity=0.195  Sum_probs=68.9

Q ss_pred             cceEEecCchHHHHHHHcCCC--CCCEEEEEcCCCchHHHHHHHHcC---CCeEEEEEeCCHHHHHHHHHHHHHhCCC--
Q 019802          220 NGCVFLQGKASSMVAAALAPK--PGWKVLDACSAPGNKTVHLAALMK---GKGKIVACELNKERVRRLKDTIKLSGAA--  292 (335)
Q Consensus       220 ~g~~~iQd~~s~l~~~~l~~~--~g~~VLD~cagpG~kt~~la~~~~---~~g~i~a~D~~~~rl~~~~~~~~~~g~~--  292 (335)
                      .|.++.-..-+.+.+.++.+.  |+..|.|+|||+|+.-......++   ....+++.+....+...++.|+.-.|+.  
T Consensus       194 ~g~~~Tp~~Iv~l~~~~~~~~~dp~~~~~Dp~~Gsg~~L~~~~~~~~~~qe~~~~~gqe~~~~~~~~a~mnm~l~~~~~~  273 (501)
T TIGR00497       194 GGEFFTPQDISELLARIAIGKKDTVDDVYDMACGSGSLLLQVIKVLGEKTSLVSYYGQEINHTTYNLCRMNMILHNIDYA  273 (501)
T ss_pred             CceeeCcHHHHHHHHHHhccCCCCCCcccccccchHHHHHHHHHHhcccccceeEEEEeCchHHHHHHHHHHHHcCCCcc
Confidence            455555555566667777765  678999999999998875544332   1246899999999999999998765552  


Q ss_pred             cEEEEeccCCCC-CC-CCCCCceEEEEEEeccccc
Q 019802          293 NIEVLHGDFLNL-DP-KDPAYSEVSLIFCIFTWMI  325 (335)
Q Consensus       293 ni~~~~~D~~~~-~~-~~~~fd~V~~IllD~~cs~  325 (335)
                      ......+|-..- +. ....||   .|+.+||-+.
T Consensus       274 t~~~~~~dtl~~~d~~~~~~~D---~v~~NpPf~~  305 (501)
T TIGR00497       274 NFNIINADTLTTKEWENENGFE---VVVSNPPYSI  305 (501)
T ss_pred             ccCcccCCcCCCccccccccCC---EEeecCCccc
Confidence            233444444332 11 123465   4788998875

Function: methylation of specific adenine residues; required for both restriction and modification activities. The ECOR124/3 I enzyme recognizes 5'GAA(N7)RTCG. for E.coli see (J. Mol. Biol. 257: 960-969 (1996)).

>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []

Probab=92.42  E-value=0.18  Score=44.54  Aligned_cols=85  Identities=15%  Similarity=0.214  Sum_probs=47.4

Q ss_pred             cceEEecCchHHHHHH-HcCCCCCCEEEEEcCCCchHHHHHHHH---cCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEE
Q 019802          220 NGCVFLQGKASSMVAA-ALAPKPGWKVLDACSAPGNKTVHLAAL---MKGKGKIVACELNKERVRRLKDTIKLSGAANIE  295 (335)
Q Consensus       220 ~g~~~iQd~~s~l~~~-~l~~~~g~~VLD~cagpG~kt~~la~~---~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~  295 (335)
                      -|...+|.+.-+.+.. ++---+.+.|+++|.+-||-...+|.+   +++.++|+++|++-+......-....+ .+.|+
T Consensus        10 ~G~pi~q~P~Dm~~~qeli~~~kPd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~~a~e~hp~-~~rI~   88 (206)
T PF04989_consen   10 LGRPIIQYPQDMVAYQELIWELKPDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNRKAIESHPM-SPRIT   88 (206)
T ss_dssp             TTEEESS-HHHHHHHHHHHHHH--SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S-GGGG-----TTEE
T ss_pred             CCeehhcCHHHHHHHHHHHHHhCCCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhchHHHhhccc-cCceE
Confidence            4667777776554433 222224579999999999999988764   457799999999755443322222222 15799


Q ss_pred             EEeccCCCCC
Q 019802          296 VLHGDFLNLD  305 (335)
Q Consensus       296 ~~~~D~~~~~  305 (335)
                      ++++|..+..
T Consensus        89 ~i~Gds~d~~   98 (206)
T PF04989_consen   89 FIQGDSIDPE   98 (206)
T ss_dssp             EEES-SSSTH
T ss_pred             EEECCCCCHH
Confidence            9999997755

Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.

>KOG1227 consensus Putative methyltransferase [General function prediction only]

Probab=92.18  E-value=0.065  Score=49.56  Aligned_cols=71  Identities=21%  Similarity=0.296  Sum_probs=54.4

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCc-EEEEeccCCCCCCCCCCCce
Q 019802          241 PGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAAN-IEVLHGDFLNLDPKDPAYSE  313 (335)
Q Consensus       241 ~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~n-i~~~~~D~~~~~~~~~~fd~  313 (335)
                      .|+.|.|+-||-|.+|+-..-. .+...|+|+|.++.-++.++++++..++.. ..++.+|.+...+. ...|+
T Consensus       194 ~~eviVDLYAGIGYFTlpflV~-agAk~V~A~EwNp~svEaLrR~~~~N~V~~r~~i~~gd~R~~~~~-~~Adr  265 (351)
T KOG1227|consen  194 DGEVIVDLYAGIGYFTLPFLVT-AGAKTVFACEWNPWSVEALRRNAEANNVMDRCRITEGDNRNPKPR-LRADR  265 (351)
T ss_pred             ccchhhhhhcccceEEeehhhc-cCccEEEEEecCHHHHHHHHHHHHhcchHHHHHhhhccccccCcc-ccchh
Confidence            3799999999999999944333 245799999999999999999999887643 45677777766543 34555

>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]

Probab=92.06  E-value=0.26  Score=46.77  Aligned_cols=75  Identities=19%  Similarity=0.207  Sum_probs=55.0

Q ss_pred             CEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCC-CCceEEEEEEec
Q 019802          243 WKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDP-AYSEVSLIFCIF  321 (335)
Q Consensus       243 ~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~~~~~-~fd~V~~IllD~  321 (335)
                      -+++|++||-||...-+-+.  +---+.|+|+++..++..+.|...     -.++..|...+....- .+ .||.|+-=|
T Consensus         4 ~~~idLFsG~GG~~lGf~~a--gf~~~~a~Eid~~a~~ty~~n~~~-----~~~~~~di~~~~~~~~~~~-~~DvligGp   75 (328)
T COG0270           4 MKVIDLFAGIGGLSLGFEEA--GFEIVFANEIDPPAVATYKANFPH-----GDIILGDIKELDGEALRKS-DVDVLIGGP   75 (328)
T ss_pred             ceEEeeccCCchHHHHHHhc--CCeEEEEEecCHHHHHHHHHhCCC-----CceeechHhhcChhhcccc-CCCEEEeCC
Confidence            47999999999999766554  234688999999999999999763     3466677766554321 11 466788889


Q ss_pred             cccc
Q 019802          322 TWMI  325 (335)
Q Consensus       322 ~cs~  325 (335)
                      ||=+
T Consensus        76 PCQ~   79 (328)
T COG0270          76 PCQD   79 (328)
T ss_pred             CCcc
Confidence            9954

>PRK13699 putative methylase; Provisional

Probab=92.03  E-value=0.34  Score=43.50  Aligned_cols=49  Identities=18%  Similarity=0.198  Sum_probs=39.8

Q ss_pred             CCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhC
Q 019802          239 PKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSG  290 (335)
Q Consensus       239 ~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g  290 (335)
                      -.+|+.|||..||+|.......++ +  .+.+++|+++.-.+.+.++++...
T Consensus       161 s~~g~~vlDpf~Gsgtt~~aa~~~-~--r~~~g~e~~~~y~~~~~~r~~~~~  209 (227)
T PRK13699        161 THPNAIVLDPFAGSGSTCVAALQS-G--RRYIGIELLEQYHRAGQQRLAAVQ  209 (227)
T ss_pred             CCCCCEEEeCCCCCCHHHHHHHHc-C--CCEEEEecCHHHHHHHHHHHHHHH
Confidence            468999999999998876655443 3  478899999999999999988654

>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A

Probab=91.68  E-value=0.57  Score=42.50  Aligned_cols=64  Identities=17%  Similarity=0.174  Sum_probs=47.6

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCC
Q 019802          241 PGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDP  306 (335)
Q Consensus       241 ~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~~  306 (335)
                      +.++|+|+|||-=-.+.-.... .++..++|+|++...++.+..-+..+|. +.++...|...-++
T Consensus       105 ~p~sVlDigCGlNPlalp~~~~-~~~a~Y~a~DID~~~ve~l~~~l~~l~~-~~~~~v~Dl~~~~~  168 (251)
T PF07091_consen  105 PPDSVLDIGCGLNPLALPWMPE-APGATYIAYDIDSQLVEFLNAFLAVLGV-PHDARVRDLLSDPP  168 (251)
T ss_dssp             --SEEEEET-TTCHHHHHTTTS-STT-EEEEEESBHHHHHHHHHHHHHTT--CEEEEEE-TTTSHT
T ss_pred             CCchhhhhhccCCceehhhccc-CCCcEEEEEeCCHHHHHHHHHHHHhhCC-CcceeEeeeeccCC
Confidence            4679999999998888755443 3456999999999999999999999997 57777778766543

>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]

Probab=91.23  E-value=0.9  Score=43.41  Aligned_cols=81  Identities=10%  Similarity=0.104  Sum_probs=59.6

Q ss_pred             CCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHH--HHHhCC-----CcEEEEeccCCCCCC-CCCCC
Q 019802          240 KPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDT--IKLSGA-----ANIEVLHGDFLNLDP-KDPAY  311 (335)
Q Consensus       240 ~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~--~~~~g~-----~ni~~~~~D~~~~~~-~~~~f  311 (335)
                      +.-++||=+|-|-|--...+... +.-++|+-+|.+++|++..+.+  +...+-     +.++++..|+.++-. ..+.|
T Consensus       288 ~~a~~vLvlGGGDGLAlRellky-P~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a~~~f  366 (508)
T COG4262         288 RGARSVLVLGGGDGLALRELLKY-PQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTAADMF  366 (508)
T ss_pred             cccceEEEEcCCchHHHHHHHhC-CCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhhcccc
Confidence            34578999999999888877765 4468999999999999999944  333321     359999999988654 33456


Q ss_pred             ceEEEEEEecccc
Q 019802          312 SEVSLIFCIFTWM  324 (335)
Q Consensus       312 d~V~~IllD~~cs  324 (335)
                      |   .|++|.|.-
T Consensus       367 D---~vIVDl~DP  376 (508)
T COG4262         367 D---VVIVDLPDP  376 (508)
T ss_pred             c---EEEEeCCCC
Confidence            6   577876643

>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]

Probab=90.72  E-value=0.25  Score=48.03  Aligned_cols=83  Identities=14%  Similarity=0.048  Sum_probs=59.0

Q ss_pred             EEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCC-cEEEEeccCCCCCCCC-CCCceEEEEEEec
Q 019802          244 KVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAA-NIEVLHGDFLNLDPKD-PAYSEVSLIFCIF  321 (335)
Q Consensus       244 ~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~-ni~~~~~D~~~~~~~~-~~fd~V~~IllD~  321 (335)
                      .|||+|+|+|-.+.+.+..+.  -.|+|++.-.-|.+.++.-+.+.|.+ +|++++.--++..... ...|.+..-++|-
T Consensus        69 ~vLdigtGTGLLSmMAvraga--D~vtA~EvfkPM~d~arkI~~kng~SdkI~vInkrStev~vg~~~RadI~v~e~fdt  146 (636)
T KOG1501|consen   69 FVLDIGTGTGLLSMMAVRAGA--DSVTACEVFKPMVDLARKIMHKNGMSDKINVINKRSTEVKVGGSSRADIAVREDFDT  146 (636)
T ss_pred             EEEEccCCccHHHHHHHHhcC--CeEEeehhhchHHHHHHHHHhcCCCccceeeeccccceeeecCcchhhhhhHhhhhh
Confidence            599999999999987777653  46999999999999999999999984 5888887666554331 1233222233344


Q ss_pred             ccccccc
Q 019802          322 TWMIIMF  328 (335)
Q Consensus       322 ~cs~~g~  328 (335)
                      ---|.|.
T Consensus       147 EligeGa  153 (636)
T KOG1501|consen  147 ELIGEGA  153 (636)
T ss_pred             hhhcccc
Confidence            4445544

>KOG2940 consensus Predicted methyltransferase [General function prediction only]

Probab=90.51  E-value=0.27  Score=44.02  Aligned_cols=69  Identities=17%  Similarity=0.179  Sum_probs=53.9

Q ss_pred             CCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCceE
Q 019802          242 GWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEV  314 (335)
Q Consensus       242 g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~~~~~~fd~V  314 (335)
                      ...++|+||+-|....|+...  +-++++-+|.|..|++..+.. +.-++ .+....+|-+.+++.+++||.+
T Consensus        73 fp~a~diGcs~G~v~rhl~~e--~vekli~~DtS~~M~~s~~~~-qdp~i-~~~~~v~DEE~Ldf~ens~DLi  141 (325)
T KOG2940|consen   73 FPTAFDIGCSLGAVKRHLRGE--GVEKLIMMDTSYDMIKSCRDA-QDPSI-ETSYFVGDEEFLDFKENSVDLI  141 (325)
T ss_pred             CcceeecccchhhhhHHHHhc--chhheeeeecchHHHHHhhcc-CCCce-EEEEEecchhcccccccchhhh
Confidence            457999999999999999765  457899999999999876543 11222 2556789999999999888753

>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases

Probab=90.20  E-value=0.2  Score=49.63  Aligned_cols=73  Identities=14%  Similarity=0.143  Sum_probs=46.4

Q ss_pred             EEEEEcCCCchHHHHHHHHcCCCeEEEE---EeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCceEEEEEEe
Q 019802          244 KVLDACSAPGNKTVHLAALMKGKGKIVA---CELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVSLIFCI  320 (335)
Q Consensus       244 ~VLD~cagpG~kt~~la~~~~~~g~i~a---~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~~~~~~fd~V~~IllD  320 (335)
                      .+||+|||.|.++..|.++   +..+++   .|.++...+.+-++    |+.-+ +-..-...+|+.+++||.|.+--|-
T Consensus       120 ~~LDvGcG~aSF~a~l~~r---~V~t~s~a~~d~~~~qvqfaleR----Gvpa~-~~~~~s~rLPfp~~~fDmvHcsrc~  191 (506)
T PF03141_consen  120 TALDVGCGVASFGAYLLER---NVTTMSFAPNDEHEAQVQFALER----GVPAM-IGVLGSQRLPFPSNAFDMVHCSRCL  191 (506)
T ss_pred             EEEeccceeehhHHHHhhC---CceEEEcccccCCchhhhhhhhc----Ccchh-hhhhccccccCCccchhhhhccccc
Confidence            6999999999999999876   233333   24455555554443    65422 2222345788899999987665554


Q ss_pred             cccc
Q 019802          321 FTWM  324 (335)
Q Consensus       321 ~~cs  324 (335)
                      .++.
T Consensus       192 i~W~  195 (506)
T PF03141_consen  192 IPWH  195 (506)
T ss_pred             ccch
Confidence            4444

; GO: 0008168 methyltransferase activity

>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length

Probab=89.78  E-value=1.8  Score=38.39  Aligned_cols=90  Identities=18%  Similarity=0.279  Sum_probs=58.3

Q ss_pred             hHHHHHHHcCCCCCCEEEEEcCCCch--HHHHHHHHc-CCCeEEEEEeCCHHHHHHHHHHHHHhCCCc-EEEEeccCC-C
Q 019802          229 ASSMVAAALAPKPGWKVLDACSAPGN--KTVHLAALM-KGKGKIVACELNKERVRRLKDTIKLSGAAN-IEVLHGDFL-N  303 (335)
Q Consensus       229 ~s~l~~~~l~~~~g~~VLD~cagpG~--kt~~la~~~-~~~g~i~a~D~~~~rl~~~~~~~~~~g~~n-i~~~~~D~~-~  303 (335)
                      ++-++..+..--.-..+++.||+-|.  .|..|+... +..|+++++-.++..+...++.+..+|+.+ ++++.++.. +
T Consensus        29 ~aEfISAlAAG~nAkliVe~~s~g~~~~ttiaLaaAAr~TgGR~vCIvp~~~~~~~~~~~l~~~~~~~~vEfvvg~~~e~  108 (218)
T PF07279_consen   29 VAEFISALAAGWNAKLIVEAWSSGGAISTTIALAAAARQTGGRHVCIVPDEQSLSEYKKALGEAGLSDVVEFVVGEAPEE  108 (218)
T ss_pred             HHHHHHHHhccccceEEEEEecCCCchHhHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHhhccccccceEEecCCHHH
Confidence            44444444333334578888776443  344443321 346899999999999999999999999866 588888753 3


Q ss_pred             CCCCCCCCceEEEEEEec
Q 019802          304 LDPKDPAYSEVSLIFCIF  321 (335)
Q Consensus       304 ~~~~~~~fd~V~~IllD~  321 (335)
                      +.+   .|..+|-+++|.
T Consensus       109 ~~~---~~~~iDF~vVDc  123 (218)
T PF07279_consen  109 VMP---GLKGIDFVVVDC  123 (218)
T ss_pred             HHh---hccCCCEEEEeC
Confidence            332   255555677774

The function of this family is unknown.

>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases

Probab=89.73  E-value=0.59  Score=41.33  Aligned_cols=73  Identities=16%  Similarity=0.150  Sum_probs=38.9

Q ss_pred             CCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCceEEEE
Q 019802          238 APKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVSLI  317 (335)
Q Consensus       238 ~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~~~~~~fd~V~~I  317 (335)
                      ...++-.|-|+|||-+..+.    .+++..+|+++|+-+.               |-.++.+|...+|.++.+   ||.+
T Consensus        69 ~~~~~~viaD~GCGdA~la~----~~~~~~~V~SfDLva~---------------n~~Vtacdia~vPL~~~s---vDv~  126 (219)
T PF05148_consen   69 KRPKSLVIADFGCGDAKLAK----AVPNKHKVHSFDLVAP---------------NPRVTACDIANVPLEDES---VDVA  126 (219)
T ss_dssp             TS-TTS-EEEES-TT-HHHH----H--S---EEEEESS-S---------------STTEEES-TTS-S--TT----EEEE
T ss_pred             hcCCCEEEEECCCchHHHHH----hcccCceEEEeeccCC---------------CCCEEEecCccCcCCCCc---eeEE
Confidence            33446799999999988763    3445568999998753               224678999999988776   5567


Q ss_pred             EEecccccccccccc
Q 019802          318 FCIFTWMIIMFHGFY  332 (335)
Q Consensus       318 llD~~cs~~g~~~~~  332 (335)
                      ++=..-||+-..+|+
T Consensus       127 VfcLSLMGTn~~~fi  141 (219)
T PF05148_consen  127 VFCLSLMGTNWPDFI  141 (219)
T ss_dssp             EEES---SS-HHHHH
T ss_pred             EEEhhhhCCCcHHHH
Confidence            777777777665554

; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.

>PRK10611 chemotaxis methyltransferase CheR; Provisional

Probab=87.84  E-value=0.81  Score=42.64  Aligned_cols=74  Identities=15%  Similarity=0.302  Sum_probs=50.1

Q ss_pred             CEEEEEcCCCchHHHHHH----HHcC---CCeEEEEEeCCHHHHHHHHHHH------------------HHh-----C--
Q 019802          243 WKVLDACSAPGNKTVHLA----ALMK---GKGKIVACELNKERVRRLKDTI------------------KLS-----G--  290 (335)
Q Consensus       243 ~~VLD~cagpG~kt~~la----~~~~---~~g~i~a~D~~~~rl~~~~~~~------------------~~~-----g--  290 (335)
                      -+|+.+||++|-=.--||    +.++   .+.+|+|.|+|+..++.+++-.                  .+.     |  
T Consensus       117 irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~~~  196 (287)
T PRK10611        117 YRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEGLV  196 (287)
T ss_pred             EEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCceE
Confidence            599999999996554443    3322   2468999999999999998751                  110     1  


Q ss_pred             -C-----CcEEEEeccCCCCCC-CCCCCceEEE
Q 019802          291 -A-----ANIEVLHGDFLNLDP-KDPAYSEVSL  316 (335)
Q Consensus       291 -~-----~ni~~~~~D~~~~~~-~~~~fd~V~~  316 (335)
                       +     ..|.+.+.|..+.++ ....||.|.+
T Consensus       197 ~v~~~lr~~V~F~~~NL~~~~~~~~~~fD~I~c  229 (287)
T PRK10611        197 RVRQELANYVDFQQLNLLAKQWAVPGPFDAIFC  229 (287)
T ss_pred             EEChHHHccCEEEcccCCCCCCccCCCcceeeH
Confidence             1     247888888887443 2456887555

>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional

Probab=87.57  E-value=1.3  Score=45.15  Aligned_cols=83  Identities=19%  Similarity=0.238  Sum_probs=55.6

Q ss_pred             CCCCCCEEEEEcCCCchHHHHHHHHc-CCCeEEEEEeCCHHHHHHHHHHHHHh-----CC---CcEEEEeccCCCCCCCC
Q 019802          238 APKPGWKVLDACSAPGNKTVHLAALM-KGKGKIVACELNKERVRRLKDTIKLS-----GA---ANIEVLHGDFLNLDPKD  308 (335)
Q Consensus       238 ~~~~g~~VLD~cagpG~kt~~la~~~-~~~g~i~a~D~~~~rl~~~~~~~~~~-----g~---~ni~~~~~D~~~~~~~~  308 (335)
                      +.+.|..||=.|+ .|+.+.++++.+ ..+.+|++++.+..++..+.+.+...     |.   .++.++.+|+.+...-.
T Consensus        76 ~~~~gKvVLVTGA-TGgIG~aLAr~LLk~G~~Vval~Rn~ekl~~l~~~l~~~~L~~~Ga~~~~~v~iV~gDLtD~esI~  154 (576)
T PLN03209         76 DTKDEDLAFVAGA-TGKVGSRTVRELLKLGFRVRAGVRSAQRAESLVQSVKQMKLDVEGTQPVEKLEIVECDLEKPDQIG  154 (576)
T ss_pred             ccCCCCEEEEECC-CCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhhhhccccccccccCceEEEEecCCCHHHHH
Confidence            3446777775555 688999888765 34468999999999988776665542     21   25788999998755322


Q ss_pred             CCCceEEEEEEec
Q 019802          309 PAYSEVSLIFCIF  321 (335)
Q Consensus       309 ~~fd~V~~IllD~  321 (335)
                      ..|..++.|++.+
T Consensus       155 ~aLggiDiVVn~A  167 (576)
T PLN03209        155 PALGNASVVICCI  167 (576)
T ss_pred             HHhcCCCEEEEcc
Confidence            3355556666543

>KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification]

Probab=87.02  E-value=2.2  Score=41.04  Aligned_cols=51  Identities=20%  Similarity=0.058  Sum_probs=38.5

Q ss_pred             HHHHHHHcCCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHH
Q 019802          230 SSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRL  282 (335)
Q Consensus       230 s~l~~~~l~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~  282 (335)
                      +.++..+.+.-+-+.|+|+|+|+|..+..|+-.  .+-.|+|+|-|..-.+++
T Consensus       142 selvSsi~~f~gi~~vvD~GaG~G~LSr~lSl~--y~lsV~aIegsq~~~~ra  192 (476)
T KOG2651|consen  142 SELVSSISDFTGIDQVVDVGAGQGHLSRFLSLG--YGLSVKAIEGSQRLVERA  192 (476)
T ss_pred             HHHHHHHHhhcCCCeeEEcCCCchHHHHHHhhc--cCceEEEeccchHHHHHH
Confidence            445555556667789999999999999988754  457999999985544443

>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]

Probab=86.58  E-value=1.7  Score=40.81  Aligned_cols=55  Identities=20%  Similarity=0.267  Sum_probs=46.7

Q ss_pred             HHHcCCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCC
Q 019802          234 AAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAA  292 (335)
Q Consensus       234 ~~~l~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~  292 (335)
                      .+..+++||+.|-=+|.|.=|.+..+..+..+.++|+++|+++.+++.+++    +|..
T Consensus       185 ~~~Akv~~GstvAVfGLG~VGLav~~Gaka~GAsrIIgvDiN~~Kf~~ak~----fGaT  239 (375)
T KOG0022|consen  185 WNTAKVEPGSTVAVFGLGGVGLAVAMGAKAAGASRIIGVDINPDKFEKAKE----FGAT  239 (375)
T ss_pred             hhhcccCCCCEEEEEecchHHHHHHHhHHhcCcccEEEEecCHHHHHHHHh----cCcc
Confidence            445678999999999999988888887777788999999999999998765    5764

>PRK00536 speE spermidine synthase; Provisional

Probab=86.49  E-value=3.4  Score=37.96  Aligned_cols=73  Identities=15%  Similarity=0.070  Sum_probs=52.3

Q ss_pred             CCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHh--CC--CcEEEEeccCCCCCCCCCCCceEE
Q 019802          240 KPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLS--GA--ANIEVLHGDFLNLDPKDPAYSEVS  315 (335)
Q Consensus       240 ~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~--g~--~ni~~~~~D~~~~~~~~~~fd~V~  315 (335)
                      ....+||=+|.|-||....+...  + .+|+-+|+++..++.+++-+...  ++  ++++++.. ..  ....+.||   
T Consensus        71 ~~pk~VLIiGGGDGg~~REvLkh--~-~~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~~-~~--~~~~~~fD---  141 (262)
T PRK00536         71 KELKEVLIVDGFDLELAHQLFKY--D-THVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQ-LL--DLDIKKYD---  141 (262)
T ss_pred             CCCCeEEEEcCCchHHHHHHHCc--C-CeeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEeeh-hh--hccCCcCC---
Confidence            34579999999999999998876  2 39999999999999999955442  23  44666652 11  11124576   


Q ss_pred             EEEEec
Q 019802          316 LIFCIF  321 (335)
Q Consensus       316 ~IllD~  321 (335)
                      +|++|.
T Consensus       142 VIIvDs  147 (262)
T PRK00536        142 LIICLQ  147 (262)
T ss_pred             EEEEcC
Confidence            589993

>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]

Probab=86.43  E-value=1.9  Score=40.87  Aligned_cols=56  Identities=25%  Similarity=0.260  Sum_probs=46.6

Q ss_pred             HHHHcCCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCC
Q 019802          233 VAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAA  292 (335)
Q Consensus       233 ~~~~l~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~  292 (335)
                      +...+++++|+.|.=+|+|-=|.+..+...+.+.++|+|+|+++.|++.+++    +|..
T Consensus       177 v~nta~v~~G~tvaV~GlGgVGlaaI~gA~~agA~~IiAvD~~~~Kl~~A~~----fGAT  232 (366)
T COG1062         177 VVNTAKVEPGDTVAVFGLGGVGLAAIQGAKAAGAGRIIAVDINPEKLELAKK----FGAT  232 (366)
T ss_pred             hhhcccCCCCCeEEEEeccHhHHHHHHHHHHcCCceEEEEeCCHHHHHHHHh----cCCc
Confidence            4566789999999999999888877777777788999999999999998765    4664

>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]

Probab=86.23  E-value=3.1  Score=38.40  Aligned_cols=43  Identities=14%  Similarity=0.269  Sum_probs=33.2

Q ss_pred             CCEEEEEcCCCch----HHHHHHHHcCC----CeEEEEEeCCHHHHHHHHH
Q 019802          242 GWKVLDACSAPGN----KTVHLAALMKG----KGKIVACELNKERVRRLKD  284 (335)
Q Consensus       242 g~~VLD~cagpG~----kt~~la~~~~~----~g~i~a~D~~~~rl~~~~~  284 (335)
                      .-+|+-+||++|-    .+..+.+.++.    ..+|+|.|+|...|+.++.
T Consensus        97 ~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~  147 (268)
T COG1352          97 PIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARA  147 (268)
T ss_pred             ceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhc
Confidence            4589999999995    44455555542    5799999999999998864

>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus

Probab=84.46  E-value=0.76  Score=36.03  Aligned_cols=66  Identities=21%  Similarity=0.366  Sum_probs=45.5

Q ss_pred             CCCchHHHHHHHHcCCCe-EEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCC-CCCCCceEEEEEEecc
Q 019802          250 SAPGNKTVHLAALMKGKG-KIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDP-KDPAYSEVSLIFCIFT  322 (335)
Q Consensus       250 agpG~kt~~la~~~~~~g-~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~~-~~~~fd~V~~IllD~~  322 (335)
                      ||.|..+.++++.+...+ .|+.+|.++++++.+++.    |   +.++.+|+.+... .....+.++.|++..+
T Consensus         4 ~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~----~---~~~i~gd~~~~~~l~~a~i~~a~~vv~~~~   71 (116)
T PF02254_consen    4 IGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELREE----G---VEVIYGDATDPEVLERAGIEKADAVVILTD   71 (116)
T ss_dssp             ES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHT----T---SEEEES-TTSHHHHHHTTGGCESEEEEESS
T ss_pred             EcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhc----c---cccccccchhhhHHhhcCccccCEEEEccC
Confidence            577788888888776666 899999999998776654    3   5689999988653 2223455666766543

The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....

>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]

Probab=84.27  E-value=3.5  Score=39.32  Aligned_cols=47  Identities=23%  Similarity=0.256  Sum_probs=37.1

Q ss_pred             cCCCCCCEEEEEcCC-CchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHH
Q 019802          237 LAPKPGWKVLDACSA-PGNKTVHLAALMKGKGKIVACELNKERVRRLKDT  285 (335)
Q Consensus       237 l~~~~g~~VLD~cag-pG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~  285 (335)
                      .+.+||++|+=.|+| -|..+.++|..|+  .+|+|+|+++++++.+++.
T Consensus       162 ~~~~pG~~V~I~G~GGlGh~avQ~Aka~g--a~Via~~~~~~K~e~a~~l  209 (339)
T COG1064         162 ANVKPGKWVAVVGAGGLGHMAVQYAKAMG--AEVIAITRSEEKLELAKKL  209 (339)
T ss_pred             cCCCCCCEEEEECCcHHHHHHHHHHHHcC--CeEEEEeCChHHHHHHHHh
Confidence            467899999988887 3445567777665  7999999999999887654

>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]

Probab=83.94  E-value=0.26  Score=43.40  Aligned_cols=40  Identities=28%  Similarity=0.317  Sum_probs=33.7

Q ss_pred             CCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHH
Q 019802          242 GWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKD  284 (335)
Q Consensus       242 g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~  284 (335)
                      ..++||+|||-|-.|.+++-.+   ..|+|.+.|..|..+++.
T Consensus       113 ~~~lLDlGAGdGeit~~m~p~f---eevyATElS~tMr~rL~k  152 (288)
T KOG3987|consen  113 PVTLLDLGAGDGEITLRMAPTF---EEVYATELSWTMRDRLKK  152 (288)
T ss_pred             CeeEEeccCCCcchhhhhcchH---HHHHHHHhhHHHHHHHhh
Confidence            4589999999999999998765   359999999998877654

>PF05050 Methyltransf_21: Methyltransferase FkbM domain; InterPro: IPR007744 This entry contains proteins of unknown function

Probab=83.43  E-value=2.5  Score=34.89  Aligned_cols=39  Identities=26%  Similarity=0.288  Sum_probs=27.6

Q ss_pred             EEcCCCc--hHHHHHH-HHcCCCeEEEEEeCCHHHHHHHHHH
Q 019802          247 DACSAPG--NKTVHLA-ALMKGKGKIVACELNKERVRRLKDT  285 (335)
Q Consensus       247 D~cagpG--~kt~~la-~~~~~~g~i~a~D~~~~rl~~~~~~  285 (335)
                      |+||.-|  ..+..+. ....+.++|+++|.++..++.++.+
T Consensus         1 DvGA~~G~~~~~~~~~~~~~~~~~~v~~~Ep~p~~~~~l~~~   42 (167)
T PF05050_consen    1 DVGANIGFWSSTVYFLEKKCGPGGRVHAFEPNPSNFEKLKRN   42 (167)
T ss_dssp             EES-TTS--HHHHHHHHHHTS--SEEEEE---HHHHHHHHHH
T ss_pred             CcccCCChhHHHHHHHHHHcCCCCEEEEEECCHHHHHHHhHH
Confidence            8999999  6666654 2456678999999999999999999

; PDB: 2PY6_A.

>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]

Probab=83.38  E-value=4.1  Score=38.95  Aligned_cols=48  Identities=25%  Similarity=0.330  Sum_probs=37.3

Q ss_pred             cCCCCCCEEEEEcCCCchHHH-HHHHHcCCCeEEEEEeCCHHHHHHHHHH
Q 019802          237 LAPKPGWKVLDACSAPGNKTV-HLAALMKGKGKIVACELNKERVRRLKDT  285 (335)
Q Consensus       237 l~~~~g~~VLD~cagpG~kt~-~la~~~~~~g~i~a~D~~~~rl~~~~~~  285 (335)
                      ...+++++|+=+||||=|... +++.. .+..+|+++|.++.|++.+++.
T Consensus       164 ~~~~~~~~V~V~GaGpIGLla~~~a~~-~Ga~~Viv~d~~~~Rl~~A~~~  212 (350)
T COG1063         164 AAVRPGGTVVVVGAGPIGLLAIALAKL-LGASVVIVVDRSPERLELAKEA  212 (350)
T ss_pred             cCCCCCCEEEEECCCHHHHHHHHHHHH-cCCceEEEeCCCHHHHHHHHHh
Confidence            334556699999999966664 55555 4568999999999999998874

>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=81.72  E-value=2.1  Score=37.54  Aligned_cols=75  Identities=20%  Similarity=0.381  Sum_probs=41.9

Q ss_pred             CCEEEEEcCCCchHHHHHHHHc----C----CCeEEEEEeCCHHHHHHHHHH--------------HHHh-----C--C-
Q 019802          242 GWKVLDACSAPGNKTVHLAALM----K----GKGKIVACELNKERVRRLKDT--------------IKLS-----G--A-  291 (335)
Q Consensus       242 g~~VLD~cagpG~kt~~la~~~----~----~~g~i~a~D~~~~rl~~~~~~--------------~~~~-----g--~-  291 (335)
                      .-+|+.+||++|-=+--||-++    .    -..+|+|.|+|+..++.+++-              .+++     |  . 
T Consensus        32 ~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~~  111 (196)
T PF01739_consen   32 PLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGYR  111 (196)
T ss_dssp             -EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCTT
T ss_pred             CeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCcee
Confidence            4589999999996554443322    1    146999999999999988652              2221     1  0 


Q ss_pred             ------CcEEEEeccCCCCCCCCCCCceEEEEEE
Q 019802          292 ------ANIEVLHGDFLNLDPKDPAYSEVSLIFC  319 (335)
Q Consensus       292 ------~ni~~~~~D~~~~~~~~~~fd~V~~Ill  319 (335)
                            ++|.+.+.|..+.++....|   |.|+|
T Consensus       112 v~~~lr~~V~F~~~NL~~~~~~~~~f---D~I~C  142 (196)
T PF01739_consen  112 VKPELRKMVRFRRHNLLDPDPPFGRF---DLIFC  142 (196)
T ss_dssp             E-HHHHTTEEEEE--TT-S------E---EEEEE
T ss_pred             EChHHcCceEEEecccCCCCcccCCc---cEEEe
Confidence                  25899999998833333344   55776

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.

>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1

Probab=81.52  E-value=4.8  Score=38.81  Aligned_cols=50  Identities=22%  Similarity=0.231  Sum_probs=39.9

Q ss_pred             HHcCCCCCCEEEEEcCCC-chHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHH
Q 019802          235 AALAPKPGWKVLDACSAP-GNKTVHLAALMKGKGKIVACELNKERVRRLKDT  285 (335)
Q Consensus       235 ~~l~~~~g~~VLD~cagp-G~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~  285 (335)
                      ....+.+|++||..|+|+ |..+.+++..++ ..+|+++|.++++++.+++.
T Consensus       178 ~~~~~~~g~~VlV~g~G~vG~~~~~la~~~g-~~~vi~~~~~~~~~~~~~~~  228 (386)
T cd08283         178 ELAEVKPGDTVAVWGCGPVGLFAARSAKLLG-AERVIAIDRVPERLEMARSH  228 (386)
T ss_pred             hhccCCCCCEEEEECCCHHHHHHHHHHHHcC-CCEEEEEcCCHHHHHHHHHc
Confidence            345677899999998887 667778888764 34699999999999887764

Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T

>PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures []

Probab=80.96  E-value=4.4  Score=37.17  Aligned_cols=66  Identities=17%  Similarity=0.227  Sum_probs=47.0

Q ss_pred             CCCCEEEEEcCCCchHHHHHHHHcC----CCeEEEEEeCCHHHHHHHHHHHHHhC-CCcEEEEeccCCCCCC
Q 019802          240 KPGWKVLDACSAPGNKTVHLAALMK----GKGKIVACELNKERVRRLKDTIKLSG-AANIEVLHGDFLNLDP  306 (335)
Q Consensus       240 ~~g~~VLD~cagpG~kt~~la~~~~----~~g~i~a~D~~~~rl~~~~~~~~~~g-~~ni~~~~~D~~~~~~  306 (335)
                      .++..++|+|||.|..+.++++.+.    +...++.+|....|.+.=.. +.... ...++-+..|..+++.
T Consensus        17 ~~~~~~vEfGaGrg~LS~~v~~~~~~~~~~~~~~~lIDR~~~R~K~D~~-~~~~~~~~~~~R~riDI~dl~l   87 (259)
T PF05206_consen   17 NPDSCFVEFGAGRGELSRWVAQALQEDKPSNSRFVLIDRASNRHKADNK-IRKDESEPKFERLRIDIKDLDL   87 (259)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHhhhcccCCccEEEEecCcccccchhh-hhccCCCCceEEEEEEeeccch
Confidence            5677999999999999999999874    34689999997777743222 22222 1246667777777664

The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	335
2b9e_A	309	Human Nsun5 Protein Length = 309		2e-23
2yxl_A	450	Crystal Structure Of Ph0851 Length = 450		2e-15
3a4t_A	274	Crystal Structure Of Atrm4 From M.Jannaschii With S		1e-12
3m6u_A	464	Multi-Site-Specific 16s Rrna Methyltransferase Rsmf		3e-12
3m6w_A	464	Multi-Site-Specific 16s Rrna Methyltransferase Rsmf		3e-12
3m6x_A	464	Multi-Site-Specific 16s Rrna Methyltransferase Rsmf		2e-11
1ixk_A	315	Crystal Structure Analysis Of Methyltransferase Hom		2e-11
3m4x_A	456	Structure Of A Ribosomal Methyltransferase Length =		2e-09
1sqf_A	429	The Crystal Structure Of E. Coli Fmu Binary Complex		9e-07
2frx_A	479	Crystal Structure Of Yebu, A M5c Rna Methyltransfer		9e-06

>pdb|2B9E|A Chain A, Human Nsun5 Protein Length = 309

Iteration: 1
 Score =  106 bits (265), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 65/169 (38%), Positives = 84/169 (49%), Gaps = 19/169 (11%)
Query: 169 PRYVRVNTLKMDVDSAVLELGKQ-FVVQKXXXXXXXXXXXXG------------------ 209
           PR+VRVNTLK   D  V    +Q F  Q             G                  
Sbjct: 11  PRFVRVNTLKTCSDDVVDYFKRQGFSYQGRASSLDDLRALKGKHFLLDPLMPELLVFPAQ 70
Query: 210 CDLHVHPLIVNGCVFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKI 269
            DLH HPL   G + LQ +AS + A  L P PG  V+DAC+APGNKT HLAAL+K +GKI
Sbjct: 71  TDLHEHPLYRAGHLILQDRASCLPAMLLDPPPGSHVIDACAAPGNKTSHLAALLKNQGKI 130
Query: 270 VACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVSLIF 318
            A +L+ +R+  +   +  +G +  E+   DFL + P DP Y EV  I 
Sbjct: 131 FAFDLDAKRLASMATLLARAGVSCCELAEEDFLAVSPSDPRYHEVHYIL 179

>pdb|2YXL|A Chain A, Crystal Structure Of Ph0851 Length = 450

Iteration: 1
 Score = 80.1 bits (196), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 48/130 (36%), Positives = 71/130 (54%), Gaps = 1/130 (0%)
Query: 172 VRVNTLKMDVDSAVLELGKQFV-VQKXXXXXXXXXXXXGCDLHVHPLIVNGCVFLQGKAS 230
           +RVNTLK +V+  + EL +  V V +              +         G + +Q +AS
Sbjct: 189 IRVNTLKANVEEVIGELEEDGVEVVRSERVPTILKIKGPYNFDTSSAFNEGKIIVQEEAS 248
Query: 231 SMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSG 290
           ++ +  L PKPG  V+D  +APG KT HLA LMK KGKI A +++K R++RLKD +K  G
Sbjct: 249 AVASIVLDPKPGETVVDLAAAPGGKTTHLAELMKNKGKIYAFDVDKMRMKRLKDFVKRMG 308
Query: 291 AANIEVLHGD 300
              ++ L  D
Sbjct: 309 IKIVKPLVKD 318

>pdb|3A4T|A Chain A, Crystal Structure Of Atrm4 From M.Jannaschii With Sinefungin Length = 274

Iteration: 1
 Score = 70.9 bits (172), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 45/134 (33%), Positives = 66/134 (49%), Gaps = 1/134 (0%)
Query: 168 KPRYVRVNTLKMDVDSAVLEL-GKQFVVQKXXXXXXXXXXXXGCDLHVHPLIVNGCVFLQ 226
           K +++RVNTLK++ +     L  K  V++K               +   P  + G    Q
Sbjct: 9   KMQFIRVNTLKINPEVLKKRLENKGVVLEKTFLDYAFEVKKSPFSIGSTPEYLFGYYMPQ 68
Query: 227 GKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTI 286
             +S +    L P+    +LD C+APG KT HLA LMK KG IVA E++K R + LK  I
Sbjct: 69  SISSMIPPIVLNPREDDFILDMCAAPGGKTTHLAQLMKNKGTIVAVEISKTRTKALKSNI 128
Query: 287 KLSGAANIEVLHGD 300
              G  N  +++ D
Sbjct: 129 NRMGVLNTIIINAD 142

>pdb|3M6U|A Chain A, Multi-Site-Specific 16s Rrna Methyltransferase Rsmf From Thermus Thermophilus In Space Group 43 Length = 464

Iteration: 1
 Score = 69.3 bits (168), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 34/77 (44%), Positives = 48/77 (62%)
Query: 215 HPLIVNGCVFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACEL 274
           HP    G  ++Q  ++  V   L PKPG +VLD  +APG KT HLAA M GKG ++A E+
Sbjct: 75  HPFFYAGLYYIQEPSAQAVGVLLDPKPGERVLDLAAAPGGKTTHLAARMGGKGLLLANEV 134
Query: 275 NKERVRRLKDTIKLSGA 291
           + +RVR L + ++  GA
Sbjct: 135 DGKRVRGLLENVERWGA 151

>pdb|3M6W|A Chain A, Multi-Site-Specific 16s Rrna Methyltransferase Rsmf From Thermus Thermophilus In Space Group P21212 In Complex With S-Adenosyl-L- Methionine Length = 464

Iteration: 1
 Score = 69.3 bits (168), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 34/77 (44%), Positives = 48/77 (62%)
Query: 215 HPLIVNGCVFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACEL 274
           HP    G  ++Q  ++  V   L PKPG +VLD  +APG KT HLAA M GKG ++A E+
Sbjct: 75  HPFFYAGLYYIQEPSAQAVGVLLDPKPGERVLDLAAAPGGKTTHLAARMGGKGLLLANEV 134
Query: 275 NKERVRRLKDTIKLSGA 291
           + +RVR L + ++  GA
Sbjct: 135 DGKRVRGLLENVERWGA 151

>pdb|3M6X|A Chain A, Multi-Site-Specific 16s Rrna Methyltransferase Rsmf From Thermus Thermophilus In Space Group P21212 Length = 464

Iteration: 1
 Score = 66.6 bits (161), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 33/77 (42%), Positives = 47/77 (61%)
Query: 215 HPLIVNGCVFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACEL 274
           HP    G  ++Q  ++  V   L PKPG +VLD  +APG KT HLAA   GKG ++A E+
Sbjct: 75  HPFFYAGLYYIQEPSAQAVGVLLDPKPGERVLDLAAAPGGKTTHLAARXGGKGLLLANEV 134
Query: 275 NKERVRRLKDTIKLSGA 291
           + +RVR L + ++  GA
Sbjct: 135 DGKRVRGLLENVERWGA 151

>pdb|1IXK|A Chain A, Crystal Structure Analysis Of Methyltransferase Homolog Protein From Pyrococcus Horikoshii Length = 315

Iteration: 1
 Score = 66.2 bits (160), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 43/140 (30%), Positives = 67/140 (47%), Gaps = 2/140 (1%)
Query: 167 PKPRYVRVNTLKMDVDSAVLELGKQ-FVVQKXXXXXXXX-XXXXGCDLHVHPLIVNGCVF 224
           P PR  RVNTLK+ V   V  L K+ F  ++                +   P  + G ++
Sbjct: 42  PLPRCFRVNTLKISVQDLVKRLNKKGFQFKRVPWAKEGFCLTREPFSITSTPEFLTGLIY 101
Query: 225 LQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKD 284
           +Q  +S     AL PKPG  V D  +APG KT +LA L +  G I A ++++ R+R  + 
Sbjct: 102 IQEASSXYPPVALDPKPGEIVADXAAAPGGKTSYLAQLXRNDGVIYAFDVDENRLRETRL 161
Query: 285 TIKLSGAANIEVLHGDFLNL 304
            +   G  N+ + H   L++
Sbjct: 162 NLSRLGVLNVILFHSSSLHI 181

>pdb|3M4X|A Chain A, Structure Of A Ribosomal Methyltransferase Length = 456

Iteration: 1
 Score = 60.1 bits (144), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 35/83 (42%), Positives = 47/83 (56%), Gaps = 8/83 (9%)
Query: 219 VNGCVFL--------QGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIV 270
           VNG  FL        Q  ++ +V  A A KPG KVLD C+APG K+  LAA  KGKG +V
Sbjct: 75  VNGKSFLHQAGYEYSQEPSAXIVGTAAAAKPGEKVLDLCAAPGGKSTQLAAQXKGKGLLV 134
Query: 271 ACELNKERVRRLKDTIKLSGAAN 293
             E+  +R + L + I+  G +N
Sbjct: 135 TNEIFPKRAKILSENIERWGVSN 157

>pdb|1SQF|A Chain A, The Crystal Structure Of E. Coli Fmu Binary Complex With S- Adenosylmethionine At 2.1 A Resolution Length = 429

Iteration: 1
 Score = 51.2 bits (121), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 25/79 (31%), Positives = 46/79 (58%), Gaps = 1/79 (1%)
Query: 212 LHVHPLIVNGCVFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVA 271
           +H  P   +G V +Q  ++      LAP+ G  +LD C+APG KT H+  +   + ++VA
Sbjct: 217 VHALPGFEDGWVTVQDASAQGCMTWLAPQNGEHILDLCAAPGGKTTHILEVAP-EAQVVA 275
Query: 272 CELNKERVRRLKDTIKLSG 290
            +++++R+ R+ D +K  G
Sbjct: 276 VDIDEQRLSRVYDNLKRLG 294

>pdb|2FRX|A Chain A, Crystal Structure Of Yebu, A M5c Rna Methyltransferase From E.Coli Length = 479

Iteration: 1
 Score = 47.8 bits (112), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 44/159 (27%), Positives = 71/159 (44%), Gaps = 18/159 (11%)
Query: 153 SIEDLMALYQTPDVPKPRYVRVNTLKMDVDSAVLELGKQF------VVQKXXXXXXXXXX 206
           S +D +A  Q P     R +RVNTLK+ V +  L+L   +      +             
Sbjct: 25  SFDDFLAACQRP---LRRSIRVNTLKISV-ADFLQLTAPYGWTLTPIPWCEEGFWIERDN 80
Query: 207 XXGCDLHVHPLIVNGCVFLQGKASSMVAAAL-----APKPGWKVLDACSAPGNKTVHLAA 261
                L      ++G  ++Q  +S +  AAL     AP+   +V D  +APG+KT  ++A
Sbjct: 81  EDALPLGSTAEHLSGLFYIQEASSXLPVAALFADGNAPQ---RVXDVAAAPGSKTTQISA 137
Query: 262 LMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGD 300
               +G I+A E +  RV+ L   I   G +N+ + H D
Sbjct: 138 RXNNEGAILANEFSASRVKVLHANISRCGISNVALTHFD 176

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	335
2b9e_A	309	NOL1/NOP2/SUN domain family, member 5 isoform 2; m	6e-56
3ajd_A	274	Putative methyltransferase MJ0026; tRNA, M5C, ross	2e-40
1ixk_A	315	Methyltransferase; open beta sheet; 1.90A {Pyrococ	5e-40
2yxl_A	450	PH0851 protein, 450AA long hypothetical FMU protei	3e-38
3m4x_A	456	NOL1/NOP2/SUN family protein; mtase domain, PUA do	3e-36
2frx_A	479	Hypothetical protein YEBU; rossmann-type S-adenosy	7e-35
3m6w_A	464	RRNA methylase; rRNA methyltransferase, 5-methylcy	2e-33
1sqg_A	429	SUN protein, FMU protein; rossmann-fold, mixed bet	1e-29
3dh0_A	219	SAM dependent methyltransferase; cystal structure,	6e-09
1yb2_A	275	Hypothetical protein TA0852; structural genomics,	3e-08
3mgg_A	276	Methyltransferase; NYSGXRC, PSI-II, protein struct	3e-08
3hm2_A	178	Precorrin-6Y C5,15-methyltransferase; alpha-beta-s	1e-07
4df3_A	233	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	1e-07
1vl5_A	260	Unknown conserved protein BH2331; putative methylt	3e-07
1xxl_A	239	YCGJ protein; structural genomics, protein structu	3e-07
3mb5_A	255	SAM-dependent methyltransferase; RNA methyltransfe	7e-07
3gu3_A	284	Methyltransferase; alpha-beta protein, structural	1e-06
3fpf_A	298	Mtnas, putative uncharacterized protein; thermonic	2e-06
3eey_A	197	Putative rRNA methylase; rRNA methylation, S-adeno	3e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-04
1i9g_A	280	Hypothetical protein RV2118C; mtase, adoMet, cryst	4e-06
3dtn_A	234	Putative methyltransferase MM_2633; structural gen	8e-06
3e05_A	204	Precorrin-6Y C5,15-methyltransferase (decarboxyla;	1e-05
1g8a_A	227	Fibrillarin-like PRE-rRNA processing protein; rRNA	1e-05
3kkz_A	267	Uncharacterized protein Q5LES9; putative methyltra	2e-05
1fbn_A	230	MJ fibrillarin homologue; MJ proteins, ribosomal R	3e-05
2h1r_A	299	Dimethyladenosine transferase, putative; SGC toron	3e-05
3bkx_A	275	SAM-dependent methyltransferase; YP_807781.1, cycl	3e-05
1o54_A	277	SAM-dependent O-methyltransferase; TM0748, structu	4e-05
3lpm_A	259	Putative methyltransferase; structural genomics, p	6e-05
2pwy_A	258	TRNA (adenine-N(1)-)-methyltransferase; mtase, ado	7e-05
2b25_A	336	Hypothetical protein; structural genomics, methyl	9e-05
3f4k_A	257	Putative methyltransferase; structural genomics, P	9e-05
3dlc_A	219	Putative S-adenosyl-L-methionine-dependent methylt	1e-04
3mti_A	185	RRNA methylase; SAM-dependent, PSI, MCSG, structur	1e-04
2xvm_A	199	Tellurite resistance protein TEHB; antibiotic resi	1e-04
4fsd_A	383	Arsenic methyltransferase; rossmann fold; 1.75A {C	2e-04
3ocj_A	305	Putative exported protein; structural genomics, PS	2e-04
3ujc_A	266	Phosphoethanolamine N-methyltransferase; parasite;	2e-04
1xtp_A	254	LMAJ004091AAA; SGPP, structural genomics, PSI, pro	2e-04
3ll7_A	410	Putative methyltransferase; methytransferase, stru	2e-04
3njr_A	204	Precorrin-6Y methylase; methyltransferase, decarbo	3e-04
3ccf_A	279	Cyclopropane-fatty-acyl-phospholipid synthase; YP_	3e-04
3g5t_A	299	Trans-aconitate 3-methyltransferase; structural ge	3e-04
2kw5_A	202	SLR1183 protein; structural genomics, northeast st	4e-04
3bus_A	273	REBM, methyltransferase; rebeccamycin synthesis; H	5e-04
3id6_C	232	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	5e-04
3c3p_A	210	Methyltransferase; NP_951602.1, structural genomic	5e-04
2ozv_A	260	Hypothetical protein ATU0636; structural genomics,	9e-04

>2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38 Length = 309

 Score =  183 bits (466), Expect = 6e-56
 Identities = 68/170 (40%), Positives = 90/170 (52%), Gaps = 19/170 (11%)

Query: 164 PDVPKPRYVRVNTLKMDVDSAVLELGKQFV-------------------VQKDDLVPDLL 204
           P    PR+VRVNTLK   D  V    +Q                        D L+P+LL
Sbjct: 6   PASQLPRFVRVNTLKTCSDDVVDYFKRQGFSYQGRASSLDDLRALKGKHFLLDPLMPELL 65

Query: 205 ILPPGCDLHVHPLIVNGCVFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMK 264
           + P   DLH HPL   G + LQ +AS + A  L P PG  V+DAC+APGNKT HLAAL+K
Sbjct: 66  VFPAQTDLHEHPLYRAGHLILQDRASCLPAMLLDPPPGSHVIDACAAPGNKTSHLAALLK 125

Query: 265 GKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEV 314
            +GKI A +L+ +R+  +   +  +G +  E+   DFL + P DP Y EV
Sbjct: 126 NQGKIFAFDLDAKRLASMATLLARAGVSCCELAEEDFLAVSPSDPRYHEV 175

>3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A Length = 274

 Score =  141 bits (359), Expect = 2e-40
 Identities = 45/150 (30%), Positives = 68/150 (45%), Gaps = 1/150 (0%)

Query: 165 DVPKPRYVRVNTLKMDVDSAVLELGKQ-FVVQKDDLVPDLLILPPGCDLHVHPLIVNGCV 223
              K +++RVNTLK++ +     L  +  V++K  L     +      +   P  + G  
Sbjct: 6   KGEKMQFIRVNTLKINPEVLKKRLENKGVVLEKTFLDYAFEVKKSPFSIGSTPEYLFGYY 65

Query: 224 FLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLK 283
             Q  +S +    L P+    +LD C+APG KT HLA LMK KG IVA E++K R + LK
Sbjct: 66  MPQSISSMIPPIVLNPREDDFILDMCAAPGGKTTHLAQLMKNKGTIVAVEISKTRTKALK 125

Query: 284 DTIKLSGAANIEVLHGDFLNLDPKDPAYSE 313
             I   G  N  +++ D             
Sbjct: 126 SNINRMGVLNTIIINADMRKYKDYLLKNEI 155

>1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38 Length = 315

 Score =  141 bits (359), Expect = 5e-40
 Identities = 44/148 (29%), Positives = 72/148 (48%), Gaps = 2/148 (1%)

Query: 155 EDLMALYQTPDVPKPRYVRVNTLKMDVDSAVLELGKQ-FVVQKDDLVPD-LLILPPGCDL 212
           E  + + +  + P PR  RVNTLK+ V   V  L K+ F  ++     +   +      +
Sbjct: 30  ERAIRIAEAMEKPLPRCFRVNTLKISVQDLVKRLNKKGFQFKRVPWAKEGFCLTREPFSI 89

Query: 213 HVHPLIVNGCVFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVAC 272
              P  + G +++Q  +S     AL PKPG  V D  +APG KT +LA LM+  G I A 
Sbjct: 90  TSTPEFLTGLIYIQEASSMYPPVALDPKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAF 149

Query: 273 ELNKERVRRLKDTIKLSGAANIEVLHGD 300
           ++++ R+R  +  +   G  N+ + H  
Sbjct: 150 DVDENRLRETRLNLSRLGVLNVILFHSS 177

>2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii} Length = 450

 Score =  140 bits (354), Expect = 3e-38
 Identities = 50/145 (34%), Positives = 77/145 (53%), Gaps = 1/145 (0%)

Query: 167 PKPRYVRVNTLKMDVDSAVLELGKQ-FVVQKDDLVPDLLILPPGCDLHVHPLIVNGCVFL 225
            +   +RVNTLK +V+  + EL +    V + + VP +L +    +         G + +
Sbjct: 184 HEWISIRVNTLKANVEEVIGELEEDGVEVVRSERVPTILKIKGPYNFDTSSAFNEGKIIV 243

Query: 226 QGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDT 285
           Q +AS++ +  L PKPG  V+D  +APG KT HLA LMK KGKI A +++K R++RLKD 
Sbjct: 244 QEEASAVASIVLDPKPGETVVDLAAAPGGKTTHLAELMKNKGKIYAFDVDKMRMKRLKDF 303

Query: 286 IKLSGAANIEVLHGDFLNLDPKDPA 310
           +K  G   ++ L  D          
Sbjct: 304 VKRMGIKIVKPLVKDARKAPEIIGE 328

>3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium} Length = 456

 Score =  135 bits (341), Expect = 3e-36
 Identities = 47/158 (29%), Positives = 66/158 (41%), Gaps = 9/158 (5%)

Query: 155 EDLMALYQTPDVPKPRYVRVNTLKMDVDSAVLELGKQFVVQKDDLVPD-LLILPPGCDLH 213
           +   AL Q       +  R N LK      V        +Q      +  L    G    
Sbjct: 26  DFFSALEQGS---VKKGFRWNPLKPAGLDMVQTY-HSEELQPAPYSNEGFLGTVNG---- 77

Query: 214 VHPLIVNGCVFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACE 273
              L   G  + Q  ++ +V  A A KPG KVLD C+APG K+  LAA MKGKG +V  E
Sbjct: 78  KSFLHQAGYEYSQEPSAMIVGTAAAAKPGEKVLDLCAAPGGKSTQLAAQMKGKGLLVTNE 137

Query: 274 LNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAY 311
           +  +R + L + I+  G +N  V +     L P    +
Sbjct: 138 IFPKRAKILSENIERWGVSNAIVTNHAPAELVPHFSGF 175

>2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli} Length = 479

 Score =  131 bits (332), Expect = 7e-35
 Identities = 39/171 (22%), Positives = 68/171 (39%), Gaps = 7/171 (4%)

Query: 148 RNKVKSIEDLMALYQTPDVPKPRYVRVNTLKMDVDSAVLELGKQ-FVVQKDDLVPDLLIL 206
           R  + S             P  R +RVNTLK+ V   +       + +       +   +
Sbjct: 17  REAMPSTLSFDDFLAACQRPLRRSIRVNTLKISVADFLQLTAPYGWTLTPIPWCEEGFWI 76

Query: 207 PPGCDLHV----HPLIVNGCVFLQGKASSMVAAALA--PKPGWKVLDACSAPGNKTVHLA 260
               +  +        ++G  ++Q  +S +  AAL        +V+D  +APG+KT  ++
Sbjct: 77  ERDNEDALPLGSTAEHLSGLFYIQEASSMLPVAALFADGNAPQRVMDVAAAPGSKTTQIS 136

Query: 261 ALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAY 311
           A M  +G I+A E +  RV+ L   I   G +N+ + H D        P  
Sbjct: 137 ARMNNEGAILANEFSASRVKVLHANISRCGISNVALTHFDGRVFGAAVPEM 187

>3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A* Length = 464

 Score =  127 bits (321), Expect = 2e-33
 Identities = 44/147 (29%), Positives = 68/147 (46%), Gaps = 3/147 (2%)

Query: 165 DVPKPRYVRVNTLKMDVDSAVLELGKQFVVQKDDLVPDLLILPPGCDLHVHPLIVNGCVF 224
           +  +   +RVNTLK+  ++        + ++      +    P       HP    G  +
Sbjct: 27  EGKRTYGLRVNTLKLPPEAFQRISP--WPLRPIPWCQEGFYYPEEARPGPHPFFYAGLYY 84

Query: 225 LQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKD 284
           +Q  ++  V   L PKPG +VLD  +APG KT HLAA M GKG ++A E++ +RVR L +
Sbjct: 85  IQEPSAQAVGVLLDPKPGERVLDLAAAPGGKTTHLAARMGGKGLLLANEVDGKRVRGLLE 144

Query: 285 TIKLSGAANIEVLHGDFLNLDPKDPAY 311
            ++  GA    V       L      Y
Sbjct: 145 NVERWGAPLA-VTQAPPRALAEAFGTY 170

>1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A Length = 429

 Score =  116 bits (293), Expect = 1e-29
 Identities = 40/155 (25%), Positives = 68/155 (43%), Gaps = 7/155 (4%)

Query: 157 LMALYQTPDVPKPRYVRVNTLKMDVDSAVLELGKQ-FVVQKDDLVPDLLILPPGCDLHVH 215
           + A  Q P    P ++R+N      DS +  L +           PD + L     +H  
Sbjct: 165 VEANNQRP----PMWLRINRTHHSRDSWLALLDEAGMKGFPHADYPDAVRLETPAPVHAL 220

Query: 216 PLIVNGCVFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELN 275
           P   +G V +Q  ++      LAP+ G  +LD C+APG KT H+  +   + ++VA +++
Sbjct: 221 PGFEDGWVTVQDASAQGCMTWLAPQNGEHILDLCAAPGGKTTHILEVA-PEAQVVAVDID 279

Query: 276 KERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPA 310
           ++R+ R+ D +K  G     V  GD          
Sbjct: 280 EQRLSRVYDNLKRLG-MKATVKQGDGRYPSQWCGE 313

>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus} Length = 219

 Score = 54.3 bits (131), Expect = 6e-09
 Identities = 19/72 (26%), Positives = 33/72 (45%)

Query: 233 VAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAA 292
           V      K G  VLD  +  G    +L+ ++  KGK+ A ++ +E V    + +   G  
Sbjct: 29  VLKEFGLKEGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLGLK 88

Query: 293 NIEVLHGDFLNL 304
           N+EVL  +   +
Sbjct: 89  NVEVLKSEENKI 100

>1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13 Length = 275

 Score = 53.2 bits (127), Expect = 3e-08
 Identities = 13/109 (11%), Positives = 36/109 (33%), Gaps = 2/109 (1%)

Query: 203 LLILPPGCDLHVHPLIVNGCVFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAAL 262
            ++           +       +    +S +      +PG  +L+     GN + ++   
Sbjct: 73  FIVSDFSPMYFGRVI-RRNTQIISEIDASYIIMRCGLRPGMDILEVGVGSGNMSSYILYA 131

Query: 263 MKGKGKIVACELNKERVRRLKDTIK-LSGAANIEVLHGDFLNLDPKDPA 310
           + GKG +   E +++ +++  D +       N+     D  +       
Sbjct: 132 LNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIADFISDQMY 180

>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} Length = 276

 Score = 53.0 bits (127), Expect = 3e-08
 Identities = 17/75 (22%), Positives = 36/75 (48%), Gaps = 1/75 (1%)

Query: 231 SMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSG 290
            ++       PG KVL+A    G +TV LA       +I + +++ E + + ++  + +G
Sbjct: 27  KLLHHDTVYPPGAKVLEAGCGIGAQTVILAKNNPD-AEITSIDISPESLEKARENTEKNG 85

Query: 291 AANIEVLHGDFLNLD 305
             N++ L  +  +L 
Sbjct: 86  IKNVKFLQANIFSLP 100

>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae} Length = 178

 Score = 49.8 bits (119), Expect = 1e-07
 Identities = 15/76 (19%), Positives = 27/76 (35%), Gaps = 1/76 (1%)

Query: 235 AALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANI 294
           +ALAPKP   + D     G+  +        +   V  E+++ER  R+       G ++ 
Sbjct: 19  SALAPKPHETLWDIGGGSGSIAIE-WLRSTPQTTAVCFEISEERRERILSNAINLGVSDR 77

Query: 295 EVLHGDFLNLDPKDPA 310
             +           P 
Sbjct: 78  IAVQQGAPRAFDDVPD 93

>4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix} Length = 233

 Score = 50.9 bits (121), Expect = 1e-07
 Identities = 17/88 (19%), Positives = 32/88 (36%), Gaps = 2/88 (2%)

Query: 237 LAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEV 296
           L  K G ++L    A G    H++ ++  +G+I   E     +R L   ++     NI  
Sbjct: 73  LPVKEGDRILYLGIASGTTASHMSDIIGPRGRIYGVEFAPRVMRDLLTVVR--DRRNIFP 130

Query: 297 LHGDFLNLDPKDPAYSEVSLIFCIFTWM 324
           + GD    +        V  ++      
Sbjct: 131 ILGDARFPEKYRHLVEGVDGLYADVAQP 158

>1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41 Length = 260

 Score = 50.2 bits (120), Expect = 3e-07
 Identities = 17/79 (21%), Positives = 36/79 (45%), Gaps = 3/79 (3%)

Query: 226 QGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDT 285
           +G   + +    A K   +VLD  +  G+     A  +    K+VA +L ++ ++  +  
Sbjct: 22  KGSDLAKLMQIAALKGNEEVLDVATGGGHVANAFAPFV---KKVVAFDLTEDILKVARAF 78

Query: 286 IKLSGAANIEVLHGDFLNL 304
           I+ +G   +E + GD   +
Sbjct: 79  IEGNGHQQVEYVQGDAEQM 97

>1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A* Length = 239

 Score = 49.8 bits (119), Expect = 3e-07
 Identities = 11/79 (13%), Positives = 27/79 (34%), Gaps = 3/79 (3%)

Query: 226 QGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDT 285
              +  ++      +   +VLD  +  G+  +  +  +    + +  +  KE V      
Sbjct: 6   HHHSLGLMIKTAECRAEHRVLDIGAGAGHTALAFSPYV---QECIGVDATKEMVEVASSF 62

Query: 286 IKLSGAANIEVLHGDFLNL 304
            +  G  N+    G   +L
Sbjct: 63  AQEKGVENVRFQQGTAESL 81

>3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C* Length = 255

 Score = 48.8 bits (116), Expect = 7e-07
 Identities = 20/110 (18%), Positives = 50/110 (45%), Gaps = 2/110 (1%)

Query: 202 DLLILPPGCDLHVHPLIVNGCVFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAA 261
           +  IL P    ++  +   G   +  K ++++ A     PG  +++A    G  T+ LA 
Sbjct: 55  EFKILRPRIVDYLDKM-KRGPQIVHPKDAALIVAYAGISPGDFIVEAGVGSGALTLFLAN 113

Query: 262 LMKGKGKIVACELNKERVRRLKDTIKLSGAAN-IEVLHGDFLNLDPKDPA 310
           ++  +G++V+ E+ ++  +   + IK +G  + + +   D      ++  
Sbjct: 114 IVGPEGRVVSYEIREDFAKLAWENIKWAGFDDRVTIKLKDIYEGIEEENV 163

>3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} PDB: 2gh1_A Length = 284

 Score = 48.4 bits (115), Expect = 1e-06
 Identities = 13/80 (16%), Positives = 27/80 (33%), Gaps = 1/80 (1%)

Query: 229 ASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKL 288
            S +V           ++D     G   + L  L+    K    +  +  +   ++  +L
Sbjct: 10  VSFLVNTVWKITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRL 69

Query: 289 SGAANIEVLHGDFLNLDPKD 308
               + E L GD   ++  D
Sbjct: 70  LP-YDSEFLEGDATEIELND 88

>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A* Length = 298

 Score = 47.9 bits (113), Expect = 2e-06
 Identities = 14/81 (17%), Positives = 30/81 (37%), Gaps = 1/81 (1%)

Query: 228 KASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIK 287
           +     AA    + G + +     P   T  L + + G  ++   E+  +     +  I+
Sbjct: 109 ELLKNEAALGRFRRGERAVFIGGGPLPLTGILLSHVYG-MRVNVVEIEPDIAELSRKVIE 167

Query: 288 LSGAANIEVLHGDFLNLDPKD 308
             G   + V+ GD   +D  +
Sbjct: 168 GLGVDGVNVITGDETVIDGLE 188

>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405} Length = 197

 Score = 46.5 bits (110), Expect = 3e-06
 Identities = 14/85 (16%), Positives = 31/85 (36%), Gaps = 1/85 (1%)

Query: 240 KPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSG-AANIEVLH 298
           K G  V+DA    GN T  LA+L+   G++   ++  + +      +        + ++ 
Sbjct: 21  KEGDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLNLIDRVTLIK 80

Query: 299 GDFLNLDPKDPAYSEVSLIFCIFTW 323
               N+D       +  +    +  
Sbjct: 81  DGHQNMDKYIDCPVKAVMFNLGYLP 105

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 48.3 bits (114), Expect = 3e-06
 Identities = 52/376 (13%), Positives = 98/376 (26%), Gaps = 112/376 (29%)

Query: 26  NAERSAYFARREAAKVLRLVLRGDARRRAVGSIKSLVYSPSVKNKKATYALVCQTLKHLS 85
            AE       +     L LVL  +            V +    N    + L C+ L    
Sbjct: 231 QAELRRLLKSKPYENCL-LVLL-N------------VQNAKAWN---AFNLSCKIL---- 269

Query: 86  II---KQVLDSASILNSKWKRQEELVYILTYD---ILFGQEISL-VGD----AEKFLMLH 134
           +    KQV D  S   +     +     LT D    L  + +     D            
Sbjct: 270 LTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRR 329

Query: 135 KGAIQLALAQLLVR---------NKVKSIEDLMALYQTPDVPKPRYVR-------VN--- 175
              I  ++   L           +K+ +I +       P   +  + R        +   
Sbjct: 330 LSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPT 389

Query: 176 -TLKM--------DVDSAVLELGKQFVVQKD---------DLVPDLLILPPGCDLHVHPL 217
             L +        DV   V +L K  +V+K           +  +L +     +  +H  
Sbjct: 390 ILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLEN-EYALHRS 448

Query: 218 IVN----GCVFLQGKASS--------------MVAAALAPKP----------GW---KVL 246
           IV+       F                     +       +            +   K+ 
Sbjct: 449 IVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIR 508

Query: 247 D---ACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLN 303
               A +A G+    L  L   K  I  C+ + +  R +   +         ++   + +
Sbjct: 509 HDSTAWNASGSILNTLQQLKFYKPYI--CDNDPKYERLVNAILDFLPKIEENLICSKYTD 566

Query: 304 L------DPKDPAYSE 313
           L         +  + E
Sbjct: 567 LLRIALMAEDEAIFEE 582

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 43.3 bits (101), Expect = 1e-04
 Identities = 39/237 (16%), Positives = 67/237 (28%), Gaps = 71/237 (29%)

Query: 82  KHLS-IIKQVLDSAS---ILNSKWKRQEELVYILTYDILF--GQEI--SLVGDAEK---- 129
           K +  + K +L       I+ SK          L +  L    +E+    V +  +    
Sbjct: 36  KDVQDMPKSILSKEEIDHIIMSK--DAVSGTLRL-FWTLLSKQEEMVQKFVEEVLRINYK 92

Query: 130 FLM--LHKGAIQLALAQLLVRNKVKSIEDLMALYQTPDVPKPRYV-RVNTLKMDVDSAVL 186
           FLM  +     Q ++           IE    LY    V     V R+           L
Sbjct: 93  FLMSPIKTEQRQPSM------MTRMYIEQRDRLYNDNQVFAKYNVSRL--------QPYL 138

Query: 187 ELGKQFVVQKDDLVPDLLILPPGCDLHVHPLIVNGCVFLQGKASSMVAAALAPK------ 240
           +L +            LL L P  ++ +  ++  G     GK + +              
Sbjct: 139 KLRQA-----------LLELRPAKNVLIDGVL--GS----GK-TWVALDVCLSYKVQCKM 180

Query: 241 PG---WKVLDACSAPGNKTVHLAALM------------KGKGKIVACELNKERVRRL 282
                W  L  C++P      L  L+                  +     +  +RRL
Sbjct: 181 DFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRL 237

>1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13 Length = 280

 Score = 46.7 bits (110), Expect = 4e-06
 Identities = 20/117 (17%), Positives = 44/117 (37%), Gaps = 4/117 (3%)

Query: 203 LLILPPGCDLHVHPLIVNGCVFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAAL 262
            L+L P    +V   +  G   +  K ++ +       PG +VL+A +  G  T+ L   
Sbjct: 62  FLVLRPLLVDYVM-SMPRGPQVIYPKDAAQIVHEGDIFPGARVLEAGAGSGALTLSLLRA 120

Query: 263 MKGKGKIVACELNKERVRRLKDTIKLSGAA---NIEVLHGDFLNLDPKDPAYSEVSL 316
           +   G++++ E   +     +  +         N  ++  D  + +  D +     L
Sbjct: 121 VGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADSELPDGSVDRAVL 177

>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei} Length = 234

 Score = 45.5 bits (108), Expect = 8e-06
 Identities = 10/91 (10%), Positives = 31/91 (34%), Gaps = 7/91 (7%)

Query: 232 MVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGA 291
            V+ A        +LD  +  G  +  L             +++++ +   K+  +  G 
Sbjct: 35  SVSIASVDTENPDILDLGAGTGLLSAFLMEKYPE-ATFTLVDMSEKMLEIAKN--RFRGN 91

Query: 292 ANIEVLHGDFLNLDPKDPAYSEVSLIFCIFT 322
             ++ +  D+   D ++       ++    +
Sbjct: 92  LKVKYIEADYSKYDFEEKY----DMVVSALS 118

>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} Length = 204

 Score = 44.5 bits (105), Expect = 1e-05
 Identities = 13/67 (19%), Positives = 30/67 (44%), Gaps = 1/67 (1%)

Query: 235 AALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANI 294
           + L  +    + D  +   + ++  + LM   G+I A E N + +  ++D +K   A N+
Sbjct: 34  SKLRLQDDLVMWDIGAGSASVSIEASNLMPN-GRIFALERNPQYLGFIRDNLKKFVARNV 92

Query: 295 EVLHGDF 301
            ++    
Sbjct: 93  TLVEAFA 99

>1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A Length = 227

 Score = 44.7 bits (105), Expect = 1e-05
 Identities = 24/100 (24%), Positives = 39/100 (39%), Gaps = 9/100 (9%)

Query: 231 SMVAAALA-------PKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLK 283
           S + AA+         KPG  VL    A G    H++ ++  +GKI   E +   +R L 
Sbjct: 56  SKLGAAIMNGLKNFPIKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELV 115

Query: 284 DTIKLSGAANIEVLHGDFLNLDPKDPAYSEVSLIFCIFTW 323
             ++     NI  + GD    +       +V +IF     
Sbjct: 116 PIVE--ERRNIVPILGDATKPEEYRALVPKVDVIFEDVAQ 153

>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A* Length = 267

 Score = 44.9 bits (106), Expect = 2e-05
 Identities = 12/82 (14%), Positives = 26/82 (31%), Gaps = 5/82 (6%)

Query: 227 GKASSMVAAALAP--KPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKD 284
               ++ A +          + D     G +T+ LA      G++   +     +     
Sbjct: 30  SPEVTLKALSFIDNLTEKSLIADIGCGTGGQTMVLAG--HVTGQVTGLDFLSGFIDIFNR 87

Query: 285 TIKLSGAAN-IEVLHGDFLNLD 305
             + SG  N +  + G   +L 
Sbjct: 88  NARQSGLQNRVTGIVGSMDDLP 109

>1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A Length = 230

 Score = 43.9 bits (103), Expect = 3e-05
 Identities = 19/88 (21%), Positives = 31/88 (35%), Gaps = 3/88 (3%)

Query: 236 ALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIE 295
            +  K   K+L   ++ G    H+A +   KG + A E     +R L D        NI 
Sbjct: 69  VMPIKRDSKILYLGASAGTTPSHVADIAD-KGIVYAIEYAPRIMRELLDACA--ERENII 125

Query: 296 VLHGDFLNLDPKDPAYSEVSLIFCIFTW 323
            + GD            +V +I+     
Sbjct: 126 PILGDANKPQEYANIVEKVDVIYEDVAQ 153

>2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum} Length = 299

 Score = 44.3 bits (105), Expect = 3e-05
 Identities = 22/84 (26%), Positives = 34/84 (40%), Gaps = 6/84 (7%)

Query: 224 FL--QGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRR 281
            L   G    ++ AA   K    VL+     GN TV L  L K   K++  +++   +  
Sbjct: 24  LLKNPGILDKIIYAA-KIKSSDIVLEIGCGTGNLTVKLLPLAK---KVITIDIDSRMISE 79

Query: 282 LKDTIKLSGAANIEVLHGDFLNLD 305
           +K      G  N+EV  GD +   
Sbjct: 80  VKKRCLYEGYNNLEVYEGDAIKTV 103

>3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei} Length = 275

 Score = 43.9 bits (103), Expect = 3e-05
 Identities = 14/83 (16%), Positives = 26/83 (31%), Gaps = 9/83 (10%)

Query: 233 VAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKE---------RVRRLK 283
           +A A   KPG K+L+     G+ +  LA  +   G +   ++            +     
Sbjct: 35  IAEAWQVKPGEKILEIGCGQGDLSAVLADQVGSSGHVTGIDIASPDYGAPLTLGQAWNHL 94

Query: 284 DTIKLSGAANIEVLHGDFLNLDP 306
               L     +        +L P
Sbjct: 95  LAGPLGDRLTVHFNTNLSDDLGP 117

>1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13 Length = 277

 Score = 43.8 bits (103), Expect = 4e-05
 Identities = 21/113 (18%), Positives = 39/113 (34%), Gaps = 1/113 (0%)

Query: 204 LILPPGCDLHVHPLIVNGCVFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALM 263
            IL P     +   +      +  K SS +A  L  K G +++D     G     LA  +
Sbjct: 76  YILIPSLIDEIMN-MKRRTQIVYPKDSSFIAMMLDVKEGDRIIDTGVGSGAMCAVLARAV 134

Query: 264 KGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVSL 316
              GK+ A E  +E  +  +  +   G      +    ++    +     + L
Sbjct: 135 GSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISEGFDEKDVDALFL 187

>3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes} Length = 259

 Score = 42.9 bits (101), Expect = 6e-05
 Identities = 19/98 (19%), Positives = 36/98 (36%), Gaps = 4/98 (4%)

Query: 234 AAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAAN 293
             +  P    K++D CS  GN  + L    + K KIV  E+ +      K ++  +   +
Sbjct: 42  KFSYLPIRKGKIIDLCS--GNGIIPLLLSTRTKAKIVGVEIQERLADMAKRSVAYNQLED 99

Query: 294 -IEVLHGDFLNLDPKDPAYSEVSLIFCIFTWMIIMFHG 330
            IE++  D   +    P      ++ C   +       
Sbjct: 100 QIEIIEYDLKKITDLIPKER-ADIVTCNPPYFATPDTS 136

>2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus} Length = 258

 Score = 42.7 bits (100), Expect = 7e-05
 Identities = 21/111 (18%), Positives = 44/111 (39%), Gaps = 2/111 (1%)

Query: 202 DLLILPPGCDLHVHPLIVNGCVFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAA 261
           +L +  P  + ++   +         K +S +   L   PG +VL+A +  G  T+ LA 
Sbjct: 58  ELSVHRPTLEEYLLH-MKRSATPTYPKDASAMVTLLDLAPGMRVLEAGTGSGGLTLFLAR 116

Query: 262 LMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLH-GDFLNLDPKDPAY 311
            +  KG + + E     + + +  ++          H G     + ++ AY
Sbjct: 117 AVGEKGLVESYEARPHHLAQAERNVRAFWQVENVRFHLGKLEEAELEEAAY 167

>2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13 Length = 336

 Score = 42.9 bits (100), Expect = 9e-05
 Identities = 18/85 (21%), Positives = 39/85 (45%), Gaps = 1/85 (1%)

Query: 203 LLILPPGCDLHVHPLIVNGCVFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAAL 262
            ++  P  + +V   +  G      K  +M+ + +   PG  VL+A S  G  ++ L+  
Sbjct: 68  YMLRRPALEDYVVL-MKRGTAITFPKDINMILSMMDINPGDTVLEAGSGSGGMSLFLSKA 126

Query: 263 MKGKGKIVACELNKERVRRLKDTIK 287
           +  +G++++ E+ K+     K   K
Sbjct: 127 VGSQGRVISFEVRKDHHDLAKKNYK 151

>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A* Length = 257

 Score = 42.5 bits (100), Expect = 9e-05
 Identities = 20/103 (19%), Positives = 38/103 (36%), Gaps = 6/103 (5%)

Query: 231 SMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSG 290
             V+         K+ D     G +T+ LA  +  KG+I   +L  + +    +    + 
Sbjct: 36  KAVSFINELTDDAKIADIGCGTGGQTLFLADYV--KGQITGIDLFPDFIEIFNENAVKAN 93

Query: 291 -AANIEVLHGDFLNLDPKDPAYSEVSLIFCIFTWMIIMFHGFY 332
            A  ++ + G   NL  ++    E+ LI+       I F    
Sbjct: 94  CADRVKGITGSMDNLPFQN---EELDLIWSEGAIYNIGFERGM 133

>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis} Length = 219

 Score = 41.7 bits (98), Expect = 1e-04
 Identities = 15/74 (20%), Positives = 28/74 (37%), Gaps = 4/74 (5%)

Query: 232 MVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGA 291
            +        G   +D  S PG  ++ LA   +    I A + +K         I  +  
Sbjct: 35  NIINRFGITAG-TCIDIGSGPGALSIALAK--QSDFSIRALDFSKHMNEIALKNIADANL 91

Query: 292 AN-IEVLHGDFLNL 304
            + I+++ GD  N+
Sbjct: 92  NDRIQIVQGDVHNI 105

>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A* Length = 185

 Score = 41.0 bits (96), Expect = 1e-04
 Identities = 17/67 (25%), Positives = 28/67 (41%), Gaps = 3/67 (4%)

Query: 240 KPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHG 299
                V+DA    GN T  LA L     K+ A ++ ++ + +    +   G  N E++  
Sbjct: 21  DDESIVVDATMGNGNDTAFLAGL---SKKVYAFDVQEQALGKTSQRLSDLGIENTELILD 77

Query: 300 DFLNLDP 306
              NLD 
Sbjct: 78  GHENLDH 84

>2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A* Length = 199

 Score = 41.3 bits (97), Expect = 1e-04
 Identities = 21/102 (20%), Positives = 34/102 (33%), Gaps = 9/102 (8%)

Query: 224 FLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKG-KIVACELNKERVRRL 282
           +   +  S V  A+      K LD     G  +++LAA     G  + A + N   +  +
Sbjct: 15  YELTRTHSEVLEAVKVVKPGKTLDLGCGNGRNSLYLAA----NGYDVDAWDKNAMSIANV 70

Query: 283 KDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVSLIFCIFTWM 324
           +    +    N+     D  NL   D  Y     I      M
Sbjct: 71  ERIKSIENLDNLHTRVVDLNNLTF-DRQY---DFILSTVVLM 108

>4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A Length = 383

 Score = 41.6 bits (97), Expect = 2e-04
 Identities = 14/82 (17%), Positives = 26/82 (31%), Gaps = 8/82 (9%)

Query: 235 AALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRR--------LKDTI 286
            A     G  VLD     G      + L+   GK++  ++   ++           +   
Sbjct: 77  PADGSLEGATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAEKFF 136

Query: 287 KLSGAANIEVLHGDFLNLDPKD 308
                +N+  L G   NL   +
Sbjct: 137 GSPSRSNVRFLKGFIENLATAE 158

>3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis} Length = 305

 Score = 41.6 bits (97), Expect = 2e-04
 Identities = 12/78 (15%), Positives = 24/78 (30%), Gaps = 1/78 (1%)

Query: 234 AAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSG-AA 292
           A     +PG  V        ++ + L        ++V  + + E +            A 
Sbjct: 111 ALQRHLRPGCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLAAGHALAG 170

Query: 293 NIEVLHGDFLNLDPKDPA 310
            I +   D   LD ++  
Sbjct: 171 QITLHRQDAWKLDTREGY 188

>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A* Length = 266

 Score = 41.3 bits (97), Expect = 2e-04
 Identities = 12/83 (14%), Positives = 27/83 (32%), Gaps = 4/83 (4%)

Query: 226 QGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDT 285
             +A+  + + +      KVLD  S  G   +++    K        ++    V    + 
Sbjct: 40  GLEATKKILSDIELNENSKVLDIGSGLGGGCMYINE--KYGAHTHGIDICSNIVNMANER 97

Query: 286 IKLSGAANIEVLHGDFLNLDPKD 308
           +  +    I     D L  +  +
Sbjct: 98  VSGNN--KIIFEANDILTKEFPE 118

>1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42 Length = 254

 Score = 41.2 bits (96), Expect = 2e-04
 Identities = 22/112 (19%), Positives = 35/112 (31%), Gaps = 15/112 (13%)

Query: 213 HVHPLIVNGCVFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVAC 272
           HVH + + G        S    A+L      + LD  +  G  T +L    K        
Sbjct: 73  HVHDVDIEG--------SRNFIASLPGHGTSRALDCGAGIGRITKNLLT--KLYATTDLL 122

Query: 273 ELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVSLIFCIFTWM 324
           E  K  +   K   +L+G    + +             Y    LI   +T +
Sbjct: 123 EPVKHMLEEAKR--ELAGMPVGKFILASMETATLPPNTY---DLIVIQWTAI 169

>3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis} Length = 410

 Score = 41.7 bits (97), Expect = 2e-04
 Identities = 20/96 (20%), Positives = 36/96 (37%), Gaps = 9/96 (9%)

Query: 229 ASSMVAA---ALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKD- 284
           +S  V +   +   + G KV+D     G   +   ALM    + +  E N E     +  
Sbjct: 78  SSGAVTSSYKSRFIREGTKVVDLTGGLG---IDFIALMSKASQGIYIERNDETAVAARHN 134

Query: 285 -TIKLSGAANIEVLHGDFLNLDPKDPAYSEVSLIFC 319
             + L+   ++ +L GDF    P    +     I+ 
Sbjct: 135 IPLLLNEGKDVNILTGDFKEYLPLIKTFH-PDYIYV 169

>3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus} Length = 204

 Score = 40.6 bits (95), Expect = 3e-04
 Identities = 14/71 (19%), Positives = 28/71 (39%), Gaps = 4/71 (5%)

Query: 232 MVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTI-KLSG 290
           +  AALAP+ G  + D     G+ +V         G+ +  E   +R+  ++  I     
Sbjct: 46  LTLAALAPRRGELLWDIGGGSGSVSVEWCLA---GGRAITIEPRADRIENIQKNIDTYGL 102

Query: 291 AANIEVLHGDF 301
           +  +  + G  
Sbjct: 103 SPRMRAVQGTA 113

>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413} Length = 279

 Score = 40.9 bits (96), Expect = 3e-04
 Identities = 13/92 (14%), Positives = 28/92 (30%), Gaps = 12/92 (13%)

Query: 233 VAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAA 292
           +   L P+PG  +LD     G  T  +A       +++  +     + + +         
Sbjct: 49  LLQLLNPQPGEFILDLGCGTGQLTEKIAQS---GAEVLGTDNAATMIEKAR-----QNYP 100

Query: 293 NIEVLHGDFLNLDPKDPAYSEVSLIFCIFTWM 324
           ++     D  N     P    +  +F      
Sbjct: 101 HLHFDVADARNFRVDKP----LDAVFSNAMLH 128

>3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae} Length = 299

 Score = 40.8 bits (95), Expect = 3e-04
 Identities = 12/97 (12%), Positives = 31/97 (31%), Gaps = 7/97 (7%)

Query: 235 AALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGA--A 292
                     ++D    PG  T+ +A  +K   +I+  +L+   ++  +   + S     
Sbjct: 30  DEYHDGERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKEGSPDTYK 89

Query: 293 NIEVLHGDFLNLDPKDPAYSE---VSLIFCI--FTWM 324
           N+        +         +   + +I  +    W 
Sbjct: 90  NVSFKISSSDDFKFLGADSVDKQKIDMITAVECAHWF 126

>2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A Length = 202

 Score = 40.2 bits (94), Expect = 4e-04
 Identities = 16/98 (16%), Positives = 34/98 (34%), Gaps = 6/98 (6%)

Query: 227 GKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKG-KIVACELNKERVRRLKDT 285
            + +  + +     P  K+L      G     LA+     G ++ A + +   + + K  
Sbjct: 15  TEPNDFLVSVANQIPQGKILCLAEGEGRNACFLAS----LGYEVTAVDQSSVGLAKAKQL 70

Query: 286 IKLSGAANIEVLHGDFLNLDPKDPAYSEVSLIFCIFTW 323
            +  G   I  +  +  + D    A+  +  IFC    
Sbjct: 71  AQEKG-VKITTVQSNLADFDIVADAWEGIVSIFCHLPS 107

>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes} Length = 273

 Score = 40.1 bits (94), Expect = 5e-04
 Identities = 17/77 (22%), Positives = 33/77 (42%), Gaps = 3/77 (3%)

Query: 233 VAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAA 292
           + A L  + G +VLD     G   V LA       ++    +++ +V +       +G A
Sbjct: 53  MIALLDVRSGDRVLDVGCGIGKPAVRLAT--ARDVRVTGISISRPQVNQANARATAAGLA 110

Query: 293 N-IEVLHGDFLNLDPKD 308
           N +   + D ++L  +D
Sbjct: 111 NRVTFSYADAMDLPFED 127

>3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} PDB: 3id5_B* 3pla_E* Length = 232

 Score = 40.0 bits (93), Expect = 5e-04
 Identities = 18/87 (20%), Positives = 30/87 (34%), Gaps = 2/87 (2%)

Query: 237 LAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEV 296
              + G KVL   +A G    H++ +++  GK    E +   VR L    +     NI  
Sbjct: 72  NPIRKGTKVLYLGAASGTTISHVSDIIELNGKAYGVEFSPRVVRELLLVAQ--RRPNIFP 129

Query: 297 LHGDFLNLDPKDPAYSEVSLIFCIFTW 323
           L  D             V +++     
Sbjct: 130 LLADARFPQSYKSVVENVDVLYVDIAQ 156

>3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca} Length = 210

 Score = 39.9 bits (94), Expect = 5e-04
 Identities = 13/88 (14%), Positives = 33/88 (37%), Gaps = 4/88 (4%)

Query: 225 LQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKD 284
             G+   ++A    P+    V+      G  +   A  +    ++V  + +++ V   + 
Sbjct: 43  QTGRLLYLLARIKQPQ---LVVVPGDGLGCASWWFARAISISSRVVMIDPDRDNVEHARR 99

Query: 285 TIKLSGAAN-IEVLHGDFLNLDPKDPAY 311
            +  +G  + +E+  GD L +       
Sbjct: 100 MLHDNGLIDRVELQVGDPLGIAAGQRDI 127

>2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str} Length = 260

 Score = 39.5 bits (92), Expect = 9e-04
 Identities = 14/80 (17%), Positives = 30/80 (37%), Gaps = 7/80 (8%)

Query: 234 AAALAPKPGWKVLDACSAPGNKTVHLAALMKGKG-KIVACELNKERVRRLKDTIKLSGAA 292
           A+ +A     ++ D  +  G     +A   + +  ++   E ++E     + +++L   A
Sbjct: 29  ASLVADDRACRIADLGA--GAGAAGMAVAARLEKAEVTLYERSQEMAEFARRSLELPDNA 86

Query: 293 N----IEVLHGDFLNLDPKD 308
                IEVL  D        
Sbjct: 87  AFSARIEVLEADVTLRAKAR 106

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	335
2yxl_A	450	PH0851 protein, 450AA long hypothetical FMU protei	100.0
1sqg_A	429	SUN protein, FMU protein; rossmann-fold, mixed bet	100.0
2b9e_A	309	NOL1/NOP2/SUN domain family, member 5 isoform 2; m	100.0
1ixk_A	315	Methyltransferase; open beta sheet; 1.90A {Pyrococ	100.0
2frx_A	479	Hypothetical protein YEBU; rossmann-type S-adenosy	99.98
3m6w_A	464	RRNA methylase; rRNA methyltransferase, 5-methylcy	99.97
3m4x_A	456	NOL1/NOP2/SUN family protein; mtase domain, PUA do	99.97
3ajd_A	274	Putative methyltransferase MJ0026; tRNA, M5C, ross	99.96
4fzv_A	359	Putative methyltransferase NSUN4; mterf fold, meth	99.94
3d3b_A	141	Protein NUSB, N utilization substance protein B; N	99.6
1tzv_A	142	NUSB protein, N utilization substance protein B ho	99.59
3r2d_A	149	Protein NUSB, N utilization substance protein B; c	99.57
1eyv_A	156	NUSB protein, N-utilizing substance protein B homo	99.5
1yb2_A	275	Hypothetical protein TA0852; structural genomics,	99.46
3id6_C	232	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	99.42
1i1n_A	226	Protein-L-isoaspartate O-methyltransferase; S-aden	99.41
4df3_A	233	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	99.36
3lpm_A	259	Putative methyltransferase; structural genomics, p	99.29
1m6y_A	301	S-adenosyl-methyltransferase MRAW; SAM-dependent m	99.27
3e05_A	204	Precorrin-6Y C5,15-methyltransferase (decarboxyla;	99.27
3gdh_A	241	Trimethylguanosine synthase homolog; M7G, CAP, dim	99.22
3njr_A	204	Precorrin-6Y methylase; methyltransferase, decarbo	99.22
3mb5_A	255	SAM-dependent methyltransferase; RNA methyltransfe	99.21
3lbf_A	210	Protein-L-isoaspartate O-methyltransferase; modifi	99.21
3tma_A	354	Methyltransferase; thump domain; 2.05A {Thermus th	99.2
2igt_A	332	SAM dependent methyltransferase; alpha-beta sandwi	99.2
3u81_A	221	Catechol O-methyltransferase; neurotransmitter deg	99.18
3c0k_A	396	UPF0064 protein YCCW; PUA domain, adoMet dependent	99.18
4dmg_A	393	Putative uncharacterized protein TTHA1493; rRNA, m	99.18
3eey_A	197	Putative rRNA methylase; rRNA methylation, S-adeno	99.17
1vl5_A	260	Unknown conserved protein BH2331; putative methylt	99.17
1nv8_A	284	HEMK protein; class I adoMet-dependent methyltrans	99.17
3tfw_A	248	Putative O-methyltransferase; PSI-biology, nysgrc,	99.16
2b3t_A	276	Protein methyltransferase HEMK; translation termin	99.16
1wxx_A	382	TT1595, hypothetical protein TTHA1280; thermus the	99.16
3a27_A	272	TYW2, uncharacterized protein MJ1557; wybutosine m	99.15
2h1r_A	299	Dimethyladenosine transferase, putative; SGC toron	99.15
3v97_A	703	Ribosomal RNA large subunit methyltransferase L; Y	99.15
1dl5_A	317	Protein-L-isoaspartate O-methyltransferase; isoasp	99.14
3duw_A	223	OMT, O-methyltransferase, putative; alternating of	99.13
1xxl_A	239	YCGJ protein; structural genomics, protein structu	99.13
2pwy_A	258	TRNA (adenine-N(1)-)-methyltransferase; mtase, ado	99.13
3k6r_A	278	Putative transferase PH0793; structural genomics,	99.12
3mti_A	185	RRNA methylase; SAM-dependent, PSI, MCSG, structur	99.11
2gpy_A	233	O-methyltransferase; structural genomics, PSI, pro	99.11
1i9g_A	280	Hypothetical protein RV2118C; mtase, adoMet, cryst	99.11
3evz_A	230	Methyltransferase; NYSGXRC, NEW YORK SGX research	99.1
3dr5_A	221	Putative O-methyltransferase; Q8NRD3, CGL1119, PF0	99.1
2frn_A	278	Hypothetical protein PH0793; structural genomics,	99.1
2as0_A	396	Hypothetical protein PH1915; RNA methyltransferase	99.1
2b78_A	385	Hypothetical protein SMU.776; structure genomics,	99.1
1o54_A	277	SAM-dependent O-methyltransferase; TM0748, structu	99.09
2qm3_A	373	Predicted methyltransferase; putative methyltransf	99.09
3p9n_A	189	Possible methyltransferase (methylase); RV2966C, a	99.09
3dh0_A	219	SAM dependent methyltransferase; cystal structure,	99.08
3fpf_A	298	Mtnas, putative uncharacterized protein; thermonic	99.08
2yxe_A	215	Protein-L-isoaspartate O-methyltransferase; rossma	99.08
3r3h_A	242	O-methyltransferase, SAM-dependent; structural gen	99.08
1uwv_A	433	23S rRNA (uracil-5-)-methyltransferase RUMA; RNA m	99.07
3ntv_A	232	MW1564 protein; rossmann fold, putative methyltran	99.07
1yzh_A	214	TRNA (guanine-N(7)-)-methyltransferase; alpha-beta	99.06
2ift_A	201	Putative methylase HI0767; NESG, Y767_haein, struc	99.05
3c3y_A	237	Pfomt, O-methyltransferase; plant secondary metabo	99.05
2ozv_A	260	Hypothetical protein ATU0636; structural genomics,	99.05
2fca_A	213	TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac	99.05
1nt2_A	210	Fibrillarin-like PRE-rRNA processing protein; adeM	99.05
1nkv_A	256	Hypothetical protein YJHP; structural genomics, PS	99.04
2pbf_A	227	Protein-L-isoaspartate O-methyltransferase beta-A	99.04
4gek_A	261	TRNA (CMO5U34)-methyltransferase; structural genom	99.04
3tr6_A	225	O-methyltransferase; cellular processes; HET: SAH;	99.04
1zq9_A	285	Probable dimethyladenosine transferase; SGC, struc	99.03
2b25_A	336	Hypothetical protein; structural genomics, methyl	99.03
3tm4_A	373	TRNA (guanine N2-)-methyltransferase TRM14; rossma	99.03
3vc1_A	312	Geranyl diphosphate 2-C-methyltransferase; rossman	99.03
2fpo_A	202	Methylase YHHF; structural genomics, putative meth	99.03
2yxd_A	183	Probable cobalt-precorrin-6Y C(15)-methyltransfer	99.02
3dxy_A	218	TRNA (guanine-N(7)-)-methyltransferase; rossmann f	99.02
2dul_A	378	N(2),N(2)-dimethylguanosine tRNA methyltransferas;	99.02
3g89_A	249	Ribosomal RNA small subunit methyltransferase G; 1	99.02
3axs_A	392	Probable N(2),N(2)-dimethylguanosine tRNA methylt	99.02
1sui_A	247	Caffeoyl-COA O-methyltransferase; rossmann fold, p	99.02
1xdz_A	240	Methyltransferase GIDB; MCSG, protein structure in	99.02
3gru_A	295	Dimethyladenosine transferase; rossman fold, ribos	99.01
1wy7_A	207	Hypothetical protein PH1948; seven-stranded beta s	99.01
1dus_A	194	MJ0882; hypothetical protein, methanococcus jannas	98.99
1r18_A	227	Protein-L-isoaspartate(D-aspartate)-O-methyltrans;	98.99
1jg1_A	235	PIMT;, protein-L-isoaspartate O-methyltransferase;	98.98
3c3p_A	210	Methyltransferase; NP_951602.1, structural genomic	98.98
2h00_A	254	Methyltransferase 10 domain containing protein; st	98.98
4dcm_A	375	Ribosomal RNA large subunit methyltransferase G; 2	98.97
3f4k_A	257	Putative methyltransferase; structural genomics, P	98.97
1g8a_A	227	Fibrillarin-like PRE-rRNA processing protein; rRNA	98.96
3hm2_A	178	Precorrin-6Y C5,15-methyltransferase; alpha-beta-s	98.95
2esr_A	177	Methyltransferase; structural genomics, hypothetic	98.95
1vbf_A	231	231AA long hypothetical protein-L-isoaspartate O-	98.95
2ipx_A	233	RRNA 2'-O-methyltransferase fibrillarin; FBL, stru	98.95
2vdv_E	246	TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl	98.94
3kkz_A	267	Uncharacterized protein Q5LES9; putative methyltra	98.94
3gnl_A	244	Uncharacterized protein, DUF633, LMOF2365_1472; st	98.94
4dzr_A	215	Protein-(glutamine-N5) methyltransferase, release	98.94
3bus_A	273	REBM, methyltransferase; rebeccamycin synthesis; H	98.94
3bt7_A	369	TRNA (uracil-5-)-methyltransferase; methyluridine,	98.94
3lec_A	230	NADB-rossmann superfamily protein; PSI, MCSG, stru	98.94
3hem_A	302	Cyclopropane-fatty-acyl-phospholipid synthase 2; p	98.93
2xvm_A	199	Tellurite resistance protein TEHB; antibiotic resi	98.93
2yvl_A	248	TRMI protein, hypothetical protein; tRNA, methyltr	98.92
3p2e_A	225	16S rRNA methylase; methyltransferase, transferase	98.92
1fbn_A	230	MJ fibrillarin homologue; MJ proteins, ribosomal R	98.92
3dlc_A	219	Putative S-adenosyl-L-methionine-dependent methylt	98.92
3mgg_A	276	Methyltransferase; NYSGXRC, PSI-II, protein struct	98.9
1wg8_A	285	Predicted S-adenosylmethionine-dependent methyltra	98.9
2o57_A	297	Putative sarcosine dimethylglycine methyltransfera	98.9
3bkx_A	275	SAM-dependent methyltransferase; YP_807781.1, cycl	98.89
3grz_A	205	L11 mtase, ribosomal protein L11 methyltransferase	98.89
3jwh_A	217	HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena	98.89
3kr9_A	225	SAM-dependent methyltransferase; class I rossmann-	98.89
3mq2_A	218	16S rRNA methyltransferase; methyltranferase, ribo	98.88
2avd_A	229	Catechol-O-methyltransferase; structural genomics,	98.88
3tqs_A	255	Ribosomal RNA small subunit methyltransferase A; p	98.87
2fhp_A	187	Methylase, putative; alpha-beta-alpha sandwich, st	98.87
3ldu_A	385	Putative methylase; structural genomics, PSI-2, pr	98.87
2jjq_A	425	Uncharacterized RNA methyltransferase pyrab10780;	98.87
3ldg_A	384	Putative uncharacterized protein SMU.472; YPSC, me	98.87
3ll7_A	410	Putative methyltransferase; methytransferase, stru	98.87
3tka_A	347	Ribosomal RNA small subunit methyltransferase H; H	98.86
1qam_A	244	ERMC' methyltransferase; rRNA methyltransferase ER	98.85
3ckk_A	235	TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-	98.85
3jwg_A	219	HEN1, methyltransferase type 12; 1.90A {Clostridiu	98.84
3dmg_A	381	Probable ribosomal RNA small subunit methyltransf;	98.84
1jsx_A	207	Glucose-inhibited division protein B; methyltransf	98.84
2kw5_A	202	SLR1183 protein; structural genomics, northeast st	98.83
3k0b_A	393	Predicted N6-adenine-specific DNA methylase; methy	98.83
3g5t_A	299	Trans-aconitate 3-methyltransferase; structural ge	98.83
3gu3_A	284	Methyltransferase; alpha-beta protein, structural	98.82
3ujc_A	266	Phosphoethanolamine N-methyltransferase; parasite;	98.81
2yx1_A	336	Hypothetical protein MJ0883; methyl transferase, t	98.81
3uzu_A	279	Ribosomal RNA small subunit methyltransferase A; s	98.81
1pjz_A	203	Thiopurine S-methyltransferase; polymorphism, S-ad	98.81
2hnk_A	239	SAM-dependent O-methyltransferase; modified rossma	98.81
1l3i_A	192	Precorrin-6Y methyltransferase/putative decarboxyl	98.8
1zx0_A	236	Guanidinoacetate N-methyltransferase; structural g	98.78
1ne2_A	200	Hypothetical protein TA1320; structural genomics,	98.78
3uwp_A	438	Histone-lysine N-methyltransferase, H3 lysine-79;	98.78
3ofk_A	216	Nodulation protein S; NODS, N-methyltransferase, S	98.78
3cbg_A	232	O-methyltransferase; cyanobacterium; HET: SAH FER	98.78
2r6z_A	258	UPF0341 protein in RSP 3' region; alpha-beta prote	98.77
1yub_A	245	Ermam, rRNA methyltransferase; MLS antibiotics; NM	98.77
3dou_A	191	Ribosomal RNA large subunit methyltransferase J; c	98.77
2f8l_A	344	Hypothetical protein LMO1582; structural genomics,	98.77
3dtn_A	234	Putative methyltransferase MM_2633; structural gen	98.76
1kpg_A	287	CFA synthase;, cyclopropane-fatty-acyl-phospholipi	98.76
4fsd_A	383	Arsenic methyltransferase; rossmann fold; 1.75A {C	98.75
2fk8_A	318	Methoxy mycolic acid synthase 4; S-adenosylmethion	98.74
1o9g_A	250	RRNA methyltransferase; antibiotic resistance, Se-	98.73
3m70_A	286	Tellurite resistance protein TEHB homolog; structu	98.73
2yqz_A	263	Hypothetical protein TTHA0223; RNA methyltransfera	98.73
1ws6_A	171	Methyltransferase; structural genomics, riken stru	98.72
2okc_A	445	Type I restriction enzyme stysji M protein; NP_813	98.72
1ve3_A	227	Hypothetical protein PH0226; dimer, riken structur	98.72
3htx_A	950	HEN1; HEN1, small RNA methyltransferase, protein-R	98.71
3q87_B	170	N6 adenine specific DNA methylase; SAM-methyltrans	98.71
2fyt_A	340	Protein arginine N-methyltransferase 3; structural	98.71
3ftd_A	249	Dimethyladenosine transferase; KSGA, rossmann-like	98.71
2bm8_A	236	Cephalosporin hydroxylase CMCI; cephamycin biosynt	98.71
3ou2_A	218	SAM-dependent methyltransferase; O-methyltransfera	98.71
2plw_A	201	Ribosomal RNA methyltransferase, putative; malaria	98.71
3orh_A	236	Guanidinoacetate N-methyltransferase; structura ge	98.7
3fut_A	271	Dimethyladenosine transferase; methyltransferase,	98.7
2p35_A	259	Trans-aconitate 2-methyltransferase; SAM dependent	98.69
2oyr_A	258	UPF0341 protein YHIQ; alpha-beta protein, structur	98.68
3ocj_A	305	Putative exported protein; structural genomics, PS	98.68
2p8j_A	209	S-adenosylmethionine-dependent methyltransferase;	98.68
3ege_A	261	Putative methyltransferase from antibiotic biosyn	98.68
2gb4_A	252	Thiopurine S-methyltransferase; 18204406, thiopuri	98.68
3m33_A	226	Uncharacterized protein; structural genomics, PSI-	98.68
1wzn_A	252	SAM-dependent methyltransferase; structural genomi	98.66
1ri5_A	298	MRNA capping enzyme; methyltransferase, M7G, messe	98.66
3g5l_A	253	Putative S-adenosylmethionine dependent methyltran	98.66
4htf_A	285	S-adenosylmethionine-dependent methyltransferase;	98.66
2pjd_A	343	Ribosomal RNA small subunit methyltransferase C; g	98.65
2ex4_A	241	Adrenal gland protein AD-003; methyltransferase, s	98.64
1xtp_A	254	LMAJ004091AAA; SGPP, structural genomics, PSI, pro	98.64
3sm3_A	235	SAM-dependent methyltransferases; NESG, structural	98.64
3ccf_A	279	Cyclopropane-fatty-acyl-phospholipid synthase; YP_	98.64
3g07_A	292	7SK snRNA methylphosphate capping enzyme; structur	98.63
3q7e_A	349	Protein arginine N-methyltransferase 1; HET: SAH;	98.63
2ar0_A	541	M.ecoki, type I restriction enzyme ecoki M protein	98.62
3g2m_A	299	PCZA361.24; SAM-dependent methyltransferase, glyco	98.62
3hnr_A	220	Probable methyltransferase BT9727_4108; structural	98.62
1ej0_A	180	FTSJ; methyltransferase, adoMet, adenosyl methioni	98.6
4hg2_A	257	Methyltransferase type 11; structural genomics, PS	98.59
3r0q_C	376	Probable protein arginine N-methyltransferase 4.2;	98.59
1y8c_A	246	S-adenosylmethionine-dependent methyltransferase;	98.58
3bkw_A	243	MLL3908 protein, S-adenosylmethionine dependent me	98.58
2ih2_A	421	Modification methylase TAQI; DNA, DNA methyltransf	98.57
2y1w_A	348	Histone-arginine methyltransferase CARM1; histone	98.57
1g6q_1	328	HnRNP arginine N-methyltransferase; SAM-binding do	98.57
1u2z_A	433	Histone-lysine N-methyltransferase, H3 lysine-79 s	98.57
3fzg_A	200	16S rRNA methylase; methyltransferase, plasmid, tr	98.56
3v97_A	703	Ribosomal RNA large subunit methyltransferase L; Y	98.56
2vdw_A	302	Vaccinia virus capping enzyme D1 subunit; nucleoti	98.55
3l8d_A	242	Methyltransferase; structural genomics, PSI, nysgr	98.55
3adn_A	294	Spermidine synthase; aminopropyltransferase, polya	98.54
2pxx_A	215	Uncharacterized protein MGC2408; structural genomi	98.54
3iv6_A	261	Putative Zn-dependent alcohol dehydrogenase; alpha	98.54
1inl_A	296	Spermidine synthase; beta-barrel, rossman fold, st	98.53
3d2l_A	243	SAM-dependent methyltransferase; ZP_00538691.1, st	98.53
3h2b_A	203	SAM-dependent methyltransferase; alpha-beta protei	98.52
2p41_A	305	Type II methyltransferase; vizier, viral enzymes i	98.52
3cgg_A	195	SAM-dependent methyltransferase; NP_600671.1, meth	98.51
2nyu_A	196	Putative ribosomal RNA methyltransferase 2; SAM, s	98.5
3b3j_A	480	Histone-arginine methyltransferase CARM1; protein	98.5
3lkd_A	542	Type I restriction-modification system methyltrans	98.49
3thr_A	293	Glycine N-methyltransferase; GNMT, folate, methylt	98.49
1p91_A	269	Ribosomal RNA large subunit methyltransferase A; R	98.49
2nxc_A	254	L11 mtase, ribosomal protein L11 methyltransferase	98.47
3e23_A	211	Uncharacterized protein RPA2492; alpha-beta protei	98.47
3i9f_A	170	Putative type 11 methyltransferase; structural gen	98.46
1qyr_A	252	KSGA, high level kasugamycin resistance protein, S	98.44
2gs9_A	211	Hypothetical protein TT1324; methyl transferase, s	98.44
3bgv_A	313	MRNA CAP guanine-N7 methyltransferase; alternative	98.44
2p7i_A	250	Hypothetical protein; putative methyltransferase,	98.43
2r3s_A	335	Uncharacterized protein; methyltransferase domain,	98.43
1mjf_A	281	Spermidine synthase; spermidine synthetase, struct	98.41
4hc4_A	376	Protein arginine N-methyltransferase 6; HRMT1L6, S	98.4
3lcc_A	235	Putative methyl chloride transferase; halide methy	98.4
3pfg_A	263	N-methyltransferase; N,N-dimethyltransferase, SAM	98.4
4azs_A	569	Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15	98.4
2oxt_A	265	Nucleoside-2'-O-methyltransferase; flavivirus, vir	98.37
3bxo_A	239	N,N-dimethyltransferase; desosamine, sugar, carboh	98.37
2wa2_A	276	Non-structural protein 5; transferase, S-adenosyl-	98.36
2o07_A	304	Spermidine synthase; structural genomics, structur	98.36
1qzz_A	374	RDMB, aclacinomycin-10-hydroxylase; anthracycline,	98.36
1x19_A	359	CRTF-related protein; methyltransferase, bacterioc	98.36
1xj5_A	334	Spermidine synthase 1; structural genomics, protei	98.35
2aot_A	292	HMT, histamine N-methyltransferase; classic methyl	98.35
2avn_A	260	Ubiquinone/menaquinone biosynthesis methyltransfe	98.35
2pt6_A	321	Spermidine synthase; transferase, structural genom	98.35
2xyq_A	290	Putative 2'-O-methyl transferase; transferase-vira	98.34
1iy9_A	275	Spermidine synthase; rossmann fold, structural gen	98.33
2a14_A	263	Indolethylamine N-methyltransferase; SGC,INMT, str	98.33
3bzb_A	281	Uncharacterized protein; RED ALGA, protein structu	98.31
4auk_A	375	Ribosomal RNA large subunit methyltransferase M; Y	98.31
3bwc_A	304	Spermidine synthase; SAM, SGPP, structura genomics	98.31
3frh_A	253	16S rRNA methylase; methyltransferase domain, heli	98.3
3dli_A	240	Methyltransferase; PSI-II, NYSGXRC, structural gen	98.3
3ggd_A	245	SAM-dependent methyltransferase; YP_325210.1, stru	98.3
1uir_A	314	Polyamine aminopropyltransferase; spermidien synth	98.29
2i7c_A	283	Spermidine synthase; transferase, structural genom	98.26
1tw3_A	360	COMT, carminomycin 4-O-methyltransferase; anthracy	98.23
3cc8_A	230	Putative methyltransferase; structural genomics, j	98.23
3khk_A	544	Type I restriction-modification system methylation	98.23
3e8s_A	227	Putative SAM dependent methyltransferase; NP_74470	98.22
2b2c_A	314	Spermidine synthase; beta-alpha, transferase; 2.50	98.21
3gjy_A	317	Spermidine synthase; APC62791, structural genomics	98.17
2i62_A	265	Nicotinamide N-methyltransferase; structural genom	98.15
3gwz_A	369	MMCR; methyltransferase, mitomycin, S-adenosyl met	98.13
3ufb_A	530	Type I restriction-modification system methyltran	98.12
2ip2_A	334	Probable phenazine-specific methyltransferase; pyo	98.11
3cvo_A	202	Methyltransferase-like protein of unknown functio;	98.1
3lcv_B	281	Sisomicin-gentamicin resistance methylase SGM; ant	98.09
3i53_A	332	O-methyltransferase; CO-complex, rossmann-like fol	98.09
3dp7_A	363	SAM-dependent methyltransferase; structural genomi	98.06
3mcz_A	352	O-methyltransferase; adomet_mtases, S-adenosylmeth	98.06
1af7_A	274	Chemotaxis receptor methyltransferase CHER; chemot	98.02
2qe6_A	274	Uncharacterized protein TFU_2867; putative methylt	98.01
1vlm_A	219	SAM-dependent methyltransferase; possible histamin	97.99
2cmg_A	262	Spermidine synthase; transferase, putrescine amino	97.99
2g72_A	289	Phenylethanolamine N-methyltransferase; HET: SAM F	97.93
3sso_A	419	Methyltransferase; macrolide, natural product, ros	97.91
2qfm_A	364	Spermine synthase; spermidine aminopropyltransfera	97.91
3giw_A	277	Protein of unknown function DUF574; rossmann-fold	97.89
4e2x_A	416	TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s	97.83
3opn_A	232	Putative hemolysin; structural genomics, PSI-2, pr	97.83
3hp7_A	291	Hemolysin, putative; structural genomics, APC64019	97.79
3s1s_A	878	Restriction endonuclease bpusi; PD--(D/E)XK cataly	97.78
2zfu_A	215	Nucleomethylin, cerebral protein 1; nucleolar prot	97.78
2px2_A	269	Genome polyprotein [contains: capsid protein C (co	97.65
3p8z_A	267	Mtase, non-structural protein 5; methyltransferase	97.48
3lst_A	348	CALO1 methyltransferase; calicheamicin, enediyne,	97.48
4a6d_A	353	Hydroxyindole O-methyltransferase; melatonin, circ	97.47
2wk1_A	282	NOVP; transferase, O-methyltransferase, novobiocin	97.45
1fp1_D	372	Isoliquiritigenin 2'-O-methyltransferase; protein-	97.44
3evf_A	277	RNA-directed RNA polymerase NS5; NS5 methyltransfe	97.43
4gqb_A	637	Protein arginine N-methyltransferase 5; TIM barrel	97.42
1fp2_A	352	Isoflavone O-methyltransferase; protein-product co	97.37
2zig_A	297	TTHA0409, putative modification methylase; methylt	97.36
3g7u_A	376	Cytosine-specific methyltransferase; DNA-binding,	97.36
1i4w_A	353	Mitochondrial replication protein MTF1; mitochondr	97.32
3reo_A	368	(ISO)eugenol O-methyltransferase; directed evoluti	97.24
3p9c_A	364	Caffeic acid O-methyltransferase; S-adenosylmethio	97.22
3gcz_A	282	Polyprotein; flavivirus, RNA capping, methyltransf	97.22
1g55_A	343	DNA cytosine methyltransferase DNMT2; human DNA me	97.19
2c7p_A	327	Modification methylase HHAI; DNA methyltransferase	97.17
2py6_A	409	Methyltransferase FKBM; YP_546752.1, structural ge	97.13
3lkz_A	321	Non-structural protein 5; flavivirus, methyltransf	97.13
2ld4_A	176	Anamorsin; methyltransferase-like fold, alpha/beta	97.0
2qy6_A	257	UPF0209 protein YFCK; structural genomics, unknown	97.0
1zg3_A	358	Isoflavanone 4'-O-methyltransferase; rossman fold,	96.98
3eld_A	300	Methyltransferase; flavivirus, RNA capping, guanyl	96.86
2k4m_A	153	TR8_protein, UPF0146 protein MTH_1000; alpha+beta,	96.71
2oo3_A	283	Protein involved in catabolism of external DNA; st	96.69
1g60_A	260	Adenine-specific methyltransferase MBOIIA; structu	96.63
3ua3_A	745	Protein arginine N-methyltransferase 5; TIM-barrel	96.38
2qrv_A	295	DNA (cytosine-5)-methyltransferase 3A; DNA methylt	96.31
3o4f_A	294	Spermidine synthase; aminopropyltransferase, polya	96.12
3ubt_Y	331	Modification methylase HAEIII; protein-DNA complex	96.04
4h0n_A	333	DNMT2; SAH binding, transferase; HET: SAH; 2.71A {	95.96
3r24_A	344	NSP16, 2'-O-methyl transferase; methyltransferase,	95.88
3qv2_A	327	5-cytosine DNA methyltransferase; DNMT2, ehmeth; H	95.8
3me5_A	482	Cytosine-specific methyltransferase; structural ge	94.74
3c6k_A	381	Spermine synthase; spermidine aminopropyltransfera	93.51
1eg2_A	319	Modification methylase RSRI; rossmann fold, exocyc	93.51
1boo_A	323	Protein (N-4 cytosine-specific methyltransferase P	93.2
3two_A	348	Mannitol dehydrogenase; cinnamyl-alcohol dehydroge	91.47
2dph_A	398	Formaldehyde dismutase; dismutation of aldehydes,	91.21
1kol_A	398	Formaldehyde dehydrogenase; oxidoreductase; HET: N	89.43
3s2e_A	340	Zinc-containing alcohol dehydrogenase superfamily;	89.09
1pl8_A	356	Human sorbitol dehydrogenase; NAD, oxidoreductase;	88.77
1f8f_A	371	Benzyl alcohol dehydrogenase; rossmann fold, oxido	88.56
4eez_A	348	Alcohol dehydrogenase 1; site-saturation mutagenes	88.06
1y1p_A	342	ARII, aldehyde reductase II; rossmann fold, short	87.17
3swr_A	1002	DNA (cytosine-5)-methyltransferase 1; epigenetics,	86.83
1e3j_A	352	NADP(H)-dependent ketose reductase; oxidoreductase	86.62
1uuf_A	369	YAHK, zinc-type alcohol dehydrogenase-like protein	86.51
3jv7_A	345	ADH-A; dehydrogenase, nucleotide binding, rossmann	86.25
3fpc_A	352	NADP-dependent alcohol dehydrogenase; oxydoreducta	85.68
3b5i_A	374	S-adenosyl-L-methionine:salicylic acid carboxyl me	85.63
2h6e_A	344	ADH-4, D-arabinose 1-dehydrogenase; rossman fold,	84.23
4ej6_A	370	Putative zinc-binding dehydrogenase; structural ge	84.23
3m6i_A	363	L-arabinitol 4-dehydrogenase; medium chain dehydro	83.75
4a2c_A	346	Galactitol-1-phosphate 5-dehydrogenase; oxidoreduc	83.59
3uog_A	363	Alcohol dehydrogenase; structural genomics, protei	82.96
3av4_A	1330	DNA (cytosine-5)-methyltransferase 1; CXXC-type zi	82.95
1wma_A	276	Carbonyl reductase [NADPH] 1; oxidoreductase; HET:	82.91
1p0f_A	373	NADP-dependent alcohol dehydrogenase; ADH topology	82.9
1cdo_A	374	Alcohol dehydrogenase; oxidoreductase, oxidoreduct	82.88
1fmc_A	255	7 alpha-hydroxysteroid dehydrogenase; short-chain	82.7
2jhf_A	374	Alcohol dehydrogenase E chain; oxidoreductase, met	82.28
4ft4_B	784	DNA (cytosine-5)-methyltransferase 1; chromodomain	82.26
1e3i_A	376	Alcohol dehydrogenase, class II; HET: NAD; 2.08A {	82.24
2fzw_A	373	Alcohol dehydrogenase class III CHI chain; S-nitro	81.96
1rjw_A	339	ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD	81.68
1piw_A	360	Hypothetical zinc-type alcohol dehydrogenase- like	81.19
3uko_A	378	Alcohol dehydrogenase class-3; alcohol dehydrogena	81.03
4dkj_A	403	Cytosine-specific methyltransferase; CG-specificit	80.82
3ic5_A	118	Putative saccharopine dehydrogenase; structural ge	80.71

>2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii}

Probab=100.00  E-value=9.2e-47  Score=370.28  Aligned_cols=289  Identities=21%  Similarity=0.198  Sum_probs=234.9

Q ss_pred             hhhHHHHHHHHHHHHHHccchhhhh-hhhhhhhccCCCc-cCHHHHHHHHHHHHhchHHHHHHHhhccccccccc----c
Q 019802           30 SAYFARREAAKVLRLVLRGDARRRA-VGSIKSLVYSPSV-KNKKATYALVCQTLKHLSIIKQVLDSASILNSKWK----R  103 (335)
Q Consensus        30 ~~~~aR~~A~~iL~~v~~~~~~~~~-l~~~~~~~~~~~~-~dr~l~~~LV~gvlR~~~~LD~il~~~~ll~~~~~----~  103 (335)
                      +.+++|+.|+++|.+|+.++.+.+. +..... ...++. +||+++++|||||+||+..||++|.+  +++++..    .
T Consensus         9 ~~~~~R~~A~~~L~~v~~~~~~~~~~l~~~~~-~~~l~~~~dr~~~~~lv~gvlr~~~~ld~~i~~--~~~~~~~~~~~~   85 (450)
T 2yxl_A            9 SIPPKGIRAIIEAIRLGEIIKPSQYAKREAFK-KHDVEEAWLNRVLTMIFYDIMKKQGLIDKVIKE--IVGVTPLILDPW   85 (450)
T ss_dssp             CCCHHHHHHHHHHHHHTTTSSSTHHHHHHHHH-HTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHSSCGGGSCHH
T ss_pred             CcchHHHHHHHHHHHHHhcCCcHHHHHHHHHH-hccCCcHHHHHHHHHHHHHHHHhHHHHHHHHHH--hccCChhhcCHH
Confidence            3457999999999999887766553 332211 134566 89999999999999999999999997  4554432    2


Q ss_pred             hHHHHHHHHHHHHhcCCCCchhHHH----HHHHHhhhh-------H------------------------HHHHHHHHHH
Q 019802          104 QEELVYILTYDILFGQEISLVGDAE----KFLMLHKGA-------I------------------------QLALAQLLVR  148 (335)
Q Consensus       104 ~~~lLrl~lyqllf~~~iP~~a~v~----~~v~~~k~~-------~------------------------~~~l~~~~~~  148 (335)
                      .+.+||+|+|||+| + +|++++++    +.|+..|..       +                        .++++.|+.+
T Consensus        86 ~~~iLrla~yell~-~-ip~~~ain~~~~eaVelak~~~~~~~~~fvNgvL~~~~r~~~~~~~~~~~~~~~~~~P~w~~~  163 (450)
T 2yxl_A           86 LRAALRVAVDIALF-H-DPSSQTIKNLRWKASDFISSRTHPYVGMYFWDLLDKIFEYKPNPKNELEELEWKYLAPSWLIE  163 (450)
T ss_dssp             HHHHHHHHHHHHHH-S-CBCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHTCCCCCCSHHHHHHHHHTSCHHHHH
T ss_pred             HHHHHHHHHHHHhc-C-CCchHHhccccHHHHHHHHhccccccccchHHHHHHHhhccccccchhhhhhhHhcCcHHHHH
Confidence            46899999999999 4 99999888    877654320       1                        1233445544


Q ss_pred             ccC----CCHHHHHHhhcCCC-CCCCceEEEcCCCCCHHHHHHHHcc-cccccccCCCCCeEEeCCCCCCCCCcccccce
Q 019802          149 NKV----KSIEDLMALYQTPD-VPKPRYVRVNTLKMDVDSAVLELGK-QFVVQKDDLVPDLLILPPGCDLHVHPLIVNGC  222 (335)
Q Consensus       149 ~~~----~~~~~~~~~~~~~~-~~~p~~lRvN~~k~~~~~~~~~L~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~  222 (335)
                      ++.    +..++++   ++++ .+||+++|||++|++++++++.|++ |+.+++++++|+++.+....++..++.|.+|.
T Consensus       164 ~~~~~~g~~~~~~~---~a~~~~~~~~~~Rvn~~k~~~~~~~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~  240 (450)
T 2yxl_A          164 RVKGILGDETEDFF---RSVNKRHEWISIRVNTLKANVEEVIGELEEDGVEVVRSERVPTILKIKGPYNFDTSSAFNEGK  240 (450)
T ss_dssp             HHHHHHGGGHHHHH---HHHHCCCCEEEEEECTTTCCHHHHHHHHHHTTCCEEECSSCTTEEEEESCCCTTSCHHHHTTS
T ss_pred             HHHHHhhHHHHHHH---HhcCCCCCCEEEEEcCCCCCHHHHHHHHHhCCccceecCccCceEEeCCCCCcccCchhhCce
Confidence            322    2333333   3456 6899999999999999999999976 88888899999999996556899999999999


Q ss_pred             EEecCchHHHHHHHcCCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCC
Q 019802          223 VFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFL  302 (335)
Q Consensus       223 ~~iQd~~s~l~~~~l~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~  302 (335)
                      +++||.+|++++.++++++|++|||+|||||++|.++++.+++.++|+|+|+++.|++.+++|++++|+.|+.++++|+.
T Consensus       241 ~~~qd~~s~l~~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~a~D~s~~~l~~~~~~~~~~g~~~v~~~~~D~~  320 (450)
T 2yxl_A          241 IIVQEEASAVASIVLDPKPGETVVDLAAAPGGKTTHLAELMKNKGKIYAFDVDKMRMKRLKDFVKRMGIKIVKPLVKDAR  320 (450)
T ss_dssp             EEECCHHHHHHHHHHCCCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCTT
T ss_pred             EEecCchhHHHHHhcCCCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEEEcChh
Confidence            99999999999999999999999999999999999999998777899999999999999999999999999999999998


Q ss_pred             CCCC--CCCCCceEEEEEEeccccccccc
Q 019802          303 NLDP--KDPAYSEVSLIFCIFTWMIIMFH  329 (335)
Q Consensus       303 ~~~~--~~~~fd~V~~IllD~~cs~~g~~  329 (335)
                      +++.  .+..|   |.|++|+||||+|+.
T Consensus       321 ~~~~~~~~~~f---D~Vl~D~Pcsg~g~~  346 (450)
T 2yxl_A          321 KAPEIIGEEVA---DKVLLDAPCTSSGTI  346 (450)
T ss_dssp             CCSSSSCSSCE---EEEEEECCCCCGGGT
T ss_pred             hcchhhccCCC---CEEEEcCCCCCCeee
Confidence            8763  22345   469999999999983

>1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A

Probab=100.00  E-value=2.2e-45  Score=358.53  Aligned_cols=284  Identities=19%  Similarity=0.239  Sum_probs=230.6

Q ss_pred             hHHHHHHHHHHHHHHccchhh-hhhhhhhhhccCCCccCHHHHHHHHHHHHhchHHHHHHHhhccccccccc----chHH
Q 019802           32 YFARREAAKVLRLVLRGDARR-RAVGSIKSLVYSPSVKNKKATYALVCQTLKHLSIIKQVLDSASILNSKWK----RQEE  106 (335)
Q Consensus        32 ~~aR~~A~~iL~~v~~~~~~~-~~l~~~~~~~~~~~~~dr~l~~~LV~gvlR~~~~LD~il~~~~ll~~~~~----~~~~  106 (335)
                      |.+|+.|+++|.+++.++.+. .++..   ....++.+||+++++|||||+||+..||++|.+  +++++..    ..+.
T Consensus         5 ~~aR~~A~~~L~~~~~~~~~~~~~l~~---~~~~~~~~dr~~~~~lv~gvlr~~~~ld~~i~~--~~~~~~~~~~~~~~~   79 (429)
T 1sqg_A            5 RNLRSMAAQAVEQVVEQGQSLSNILPP---LQQKVSDKDKALLQELCFGVLRTLSQLDWLINK--LMARPMTGKQRTVHY   79 (429)
T ss_dssp             CCHHHHHHHHHHHHHHHCCCHHHHHHH---HHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHH--HCSSCCCGGGHHHHH
T ss_pred             hHHHHHHHHHHHHHHhcCCCHHHHHHH---HHhhCCHHHHHHHHHHHHHHHHhHHHHHHHHHH--hcCCChhhcCHHHHH
Confidence            568999999999998755433 33322   112356689999999999999999999999997  4554432    2478


Q ss_pred             HHHHHHHHHHhcCCCCchhHHHHHHHHhhh-------hHHH------------------------HHHHHHHHccC----
Q 019802          107 LVYILTYDILFGQEISLVGDAEKFLMLHKG-------AIQL------------------------ALAQLLVRNKV----  151 (335)
Q Consensus       107 lLrl~lyqllf~~~iP~~a~v~~~v~~~k~-------~~~~------------------------~l~~~~~~~~~----  151 (335)
                      |||+++|||+|+ ++|.++++++.|+..|.       .+.+                        +++.|+.+++.    
T Consensus        80 iLrl~~yel~~~-~~p~~~~ineaVelak~~~~~~~~~fvN~vL~~~~r~~~~~~~~~~~~~~~~~~p~w~~~~~~~~~g  158 (429)
T 1sqg_A           80 LIMVGLYQLLYT-RIPPHAALAETVEGAIAIKRPQLKGLINGVLRQFQRQQEELLAEFNASDARYLHPSWLLKRLQKAYP  158 (429)
T ss_dssp             HHHHHHHHHHHC-CSCHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHHHTTSGGGGCSCHHHHHHHHHHCT
T ss_pred             HHHHHHHHHhhC-CCCchHhhHHHHHHHHHhccccchhhHHHHHHHHHHhhhcccccchhhhhhhcCcHHHHHHHHHHhh
Confidence            999999999999 59999988888765331       1111                        12345443321    


Q ss_pred             CCHHHHHHhhcCCCCCCCceEEEcCCCCCHHHHHHHHcc-cccccccCCCCCeEEeCCCCCCCCCcccccceEEecCchH
Q 019802          152 KSIEDLMALYQTPDVPKPRYVRVNTLKMDVDSAVLELGK-QFVVQKDDLVPDLLILPPGCDLHVHPLIVNGCVFLQGKAS  230 (335)
Q Consensus       152 ~~~~~~~~~~~~~~~~~p~~lRvN~~k~~~~~~~~~L~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~iQd~~s  230 (335)
                      +..++++   ++++.++|+++|||++|++++++.+.|++ |+..++++++|+++.+..+.++..+++|.+|.+++||.+|
T Consensus       159 ~~~~~~~---~~~~~~~~~~~Rvn~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~qd~~s  235 (429)
T 1sqg_A          159 EQWQSIV---EANNQRPPMWLRINRTHHSRDSWLALLDEAGMKGFPHADYPDAVRLETPAPVHALPGFEDGWVTVQDASA  235 (429)
T ss_dssp             TTHHHHH---HHHTSCCCEEEEECTTTCCHHHHHHHHHHTTCCEECCTTCTTEEEESSCCCGGGSTTGGGTSEEECCHHH
T ss_pred             HHHHHHH---HhCCCCCCeEEEEcCCCCCHHHHHHHHHhCCCceeecCCCCCEEEECCCCCcccChHHhCCCeEeeCHHH
Confidence            2333333   34567899999999999999999999976 8888888999999999877789999999999999999999


Q ss_pred             HHHHHHcCCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCC--CCC
Q 019802          231 SMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLD--PKD  308 (335)
Q Consensus       231 ~l~~~~l~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~--~~~  308 (335)
                      ++++.++++++|++|||+|||||+||.++++.+++ ++|+|+|+++.|++.+++|++++|+ ++.++++|+.+++  ..+
T Consensus       236 ~~~~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~-~~v~a~D~~~~~l~~~~~~~~~~g~-~~~~~~~D~~~~~~~~~~  313 (429)
T 1sqg_A          236 QGCMTWLAPQNGEHILDLCAAPGGKTTHILEVAPE-AQVVAVDIDEQRLSRVYDNLKRLGM-KATVKQGDGRYPSQWCGE  313 (429)
T ss_dssp             HTHHHHHCCCTTCEEEEESCTTCHHHHHHHHHCTT-CEEEEEESSTTTHHHHHHHHHHTTC-CCEEEECCTTCTHHHHTT
T ss_pred             HHHHHHcCCCCcCeEEEECCCchHHHHHHHHHcCC-CEEEEECCCHHHHHHHHHHHHHcCC-CeEEEeCchhhchhhccc
Confidence            99999999999999999999999999999999865 8999999999999999999999998 4789999998876  233


Q ss_pred             CCCceEEEEEEeccccccccc
Q 019802          309 PAYSEVSLIFCIFTWMIIMFH  329 (335)
Q Consensus       309 ~~fd~V~~IllD~~cs~~g~~  329 (335)
                      ..||   .|++|+||||+|+.
T Consensus       314 ~~fD---~Vl~D~Pcsg~g~~  331 (429)
T 1sqg_A          314 QQFD---RILLDAPCSATGVI  331 (429)
T ss_dssp             CCEE---EEEEECCCCCGGGT
T ss_pred             CCCC---EEEEeCCCCccccc
Confidence            4455   59999999999983

>2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38

Probab=100.00  E-value=7e-34  Score=265.45  Aligned_cols=165  Identities=41%  Similarity=0.628  Sum_probs=143.0

Q ss_pred             CCCCCceEEEcCCCCCHHHHHHHHcc-ccccccc------------------CCCCCeEEeCCCCCCCCCcccccceEEe
Q 019802          165 DVPKPRYVRVNTLKMDVDSAVLELGK-QFVVQKD------------------DLVPDLLILPPGCDLHVHPLIVNGCVFL  225 (335)
Q Consensus       165 ~~~~p~~lRvN~~k~~~~~~~~~L~~-~~~~~~~------------------~~~~~~l~~~~~~~~~~~~~~~~g~~~i  225 (335)
                      ..++|+|+|||++|++++++++.|++ |+.+++.                  +++|+++.++++.++..+++|++|.+++
T Consensus         7 ~~~~p~~lRvN~lk~~~~~~~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~~~~~~~~~~G~~~~   86 (309)
T 2b9e_A            7 ASQLPRFVRVNTLKTCSDDVVDYFKRQGFSYQGRASSLDDLRALKGKHFLLDPLMPELLVFPAQTDLHEHPLYRAGHLIL   86 (309)
T ss_dssp             --CCCEEEEECTTTCCHHHHHHHHHHTTCEEEEECSSHHHHHTCCTTEEEECSSSTTEEEECTTCCCTTSHHHHTTSEEE
T ss_pred             CCCCCeEEEEeCCCCCHHHHHHHHHhCCCeeeeccccccccccccccccccccCCCceEEeCCCCCcccChHHHCCeEEE
Confidence            45899999999999999999999976 6655543                  4567888887777899999999999999


Q ss_pred             cCchHHHHHHHcCCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCC
Q 019802          226 QGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLD  305 (335)
Q Consensus       226 Qd~~s~l~~~~l~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~  305 (335)
                      ||.+||+++.++++++|++|||+|||||+||+++++++++.++|+|+|+++.|++.+++|++++|+.||+++++|+.+++
T Consensus        87 Qd~~s~l~~~~l~~~~g~~VLDlcaG~G~kt~~la~~~~~~g~V~a~D~~~~~l~~~~~n~~r~g~~~v~~~~~D~~~~~  166 (309)
T 2b9e_A           87 QDRASCLPAMLLDPPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGVSCCELAEEDFLAVS  166 (309)
T ss_dssp             CCTGGGHHHHHHCCCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGSC
T ss_pred             ECHHHHHHHHHhCCCCCCEEEEeCCChhHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCChHhcC
Confidence            99999999999999999999999999999999999999888999999999999999999999999999999999999887


Q ss_pred             CCCCCCceEEEEEEeccccccccc
Q 019802          306 PKDPAYSEVSLIFCIFTWMIIMFH  329 (335)
Q Consensus       306 ~~~~~fd~V~~IllD~~cs~~g~~  329 (335)
                      .....+..+|.|++|+||||+|+.
T Consensus       167 ~~~~~~~~fD~Vl~D~PcSg~G~~  190 (309)
T 2b9e_A          167 PSDPRYHEVHYILLDPSCSGSGMP  190 (309)
T ss_dssp             TTCGGGTTEEEEEECCCCCC----
T ss_pred             ccccccCCCCEEEEcCCcCCCCCC
Confidence            543223446679999999999983

>1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38

Probab=100.00  E-value=4.7e-33  Score=260.86  Aligned_cols=186  Identities=26%  Similarity=0.360  Sum_probs=157.3

Q ss_pred             HHHHHHHHccCCC-HHHHHHhhcCCCCCCCceEEEcCCCCCHHHHHHHHcc-cccccccCCCCCeEEeCC-CCCCCCCcc
Q 019802          141 ALAQLLVRNKVKS-IEDLMALYQTPDVPKPRYVRVNTLKMDVDSAVLELGK-QFVVQKDDLVPDLLILPP-GCDLHVHPL  217 (335)
Q Consensus       141 ~l~~~~~~~~~~~-~~~~~~~~~~~~~~~p~~lRvN~~k~~~~~~~~~L~~-~~~~~~~~~~~~~l~~~~-~~~~~~~~~  217 (335)
                      +++.|+.++.... .+++.+++++++.++|+++|||++|++++++++.|++ |+.+++.+++|+++.+.. ..++..++.
T Consensus        15 ~~P~w~~~~~~~~~g~~~~~~~~~~~~~~p~~~RvN~~k~~~~~~~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~   94 (315)
T 1ixk_A           15 GYSKLFADRYFQLWGERAIRIAEAMEKPLPRCFRVNTLKISVQDLVKRLNKKGFQFKRVPWAKEGFCLTREPFSITSTPE   94 (315)
T ss_dssp             TCCHHHHHHHHHHHTTHHHHHHHHTTSCCCCEEEECTTTSCHHHHHHHHHHTTCEEEEETTEEEEEEEEECSSCGGGSHH
T ss_pred             CCcHHHHHHHHHHccHHHHHHHHHcCCCCCeEEEEeCCCCCHHHHHHHHHhCCCeeeECCCCCceEEEeCCCCCcccChh
Confidence            4455554433210 1233334445677999999999999999999999976 788888889999988853 346889999


Q ss_pred             cccceEEecCchHHHHHHHcCCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEE
Q 019802          218 IVNGCVFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVL  297 (335)
Q Consensus       218 ~~~g~~~iQd~~s~l~~~~l~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~  297 (335)
                      |.+|.+++||.+|++++.++++++|++|||+|||||++|.++++.+++.++|+|+|+++.|++.+++|++++|+.|++++
T Consensus        95 ~~~G~~~~qd~~s~l~~~~l~~~~g~~VLDlg~G~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~~~~~~g~~~v~~~  174 (315)
T 1ixk_A           95 FLTGLIYIQEASSMYPPVALDPKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVLNVILF  174 (315)
T ss_dssp             HHTTSEEECCHHHHHHHHHHCCCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCCSEEEE
T ss_pred             HhcceEEEeCHHHHHHHHHhCCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHHhCCCeEEEE
Confidence            99999999999999999999999999999999999999999999988789999999999999999999999999999999


Q ss_pred             eccCCCCCCCCCCCceEEEEEEeccccccccc
Q 019802          298 HGDFLNLDPKDPAYSEVSLIFCIFTWMIIMFH  329 (335)
Q Consensus       298 ~~D~~~~~~~~~~fd~V~~IllD~~cs~~g~~  329 (335)
                      ++|+.+++.....||   .|++|+||||+|+.
T Consensus       175 ~~D~~~~~~~~~~fD---~Il~d~Pcsg~g~~  203 (315)
T 1ixk_A          175 HSSSLHIGELNVEFD---KILLDAPCTGSGTI  203 (315)
T ss_dssp             SSCGGGGGGGCCCEE---EEEEECCTTSTTTC
T ss_pred             ECChhhcccccccCC---EEEEeCCCCCcccc
Confidence            999998765344455   59999999999974

>2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli}

Probab=99.98  E-value=8.1e-33  Score=272.46  Aligned_cols=169  Identities=24%  Similarity=0.280  Sum_probs=148.2

Q ss_pred             HHHHHhhcCCCCCCCceEEEcCCCCCHHHHHHHHcc-cccccccCCCCCeEEeCCCC----CCCCCcccccceEEecCch
Q 019802          155 EDLMALYQTPDVPKPRYVRVNTLKMDVDSAVLELGK-QFVVQKDDLVPDLLILPPGC----DLHVHPLIVNGCVFLQGKA  229 (335)
Q Consensus       155 ~~~~~~~~~~~~~~p~~lRvN~~k~~~~~~~~~L~~-~~~~~~~~~~~~~l~~~~~~----~~~~~~~~~~g~~~iQd~~  229 (335)
                      +++++   +++.++|+++|||++|++++++++.|++ |+.+++.+++++++.+....    .+..+++|.+|.+++||.+
T Consensus        27 ~~~~~---a~~~~~p~~lRvN~lk~~~~~~~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~Qd~~  103 (479)
T 2frx_A           27 DDFLA---ACQRPLRRSIRVNTLKISVADFLQLTAPYGWTLTPIPWCEEGFWIERDNEDALPLGSTAEHLSGLFYIQEAS  103 (479)
T ss_dssp             HHHHH---HHTSCCCCCEEECTTTCCHHHHHHHHGGGCCCCCEETTEEEEEC---------CGGGSHHHHTTSEEECCHH
T ss_pred             HHHHH---hcCCCCCEEEEEeCCCCCHHHHHHHHHHcCCceeecCCCCceEEEecCcccccCcccChHHhCcEEEEECHH
Confidence            44544   4567999999999999999999999976 88888899999998885322    6788999999999999999


Q ss_pred             HHHHHHHcCCC--CCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCC-
Q 019802          230 SSMVAAALAPK--PGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDP-  306 (335)
Q Consensus       230 s~l~~~~l~~~--~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~~-  306 (335)
                      ||+++.++++.  +|++|||+|||||+||+++++++++.+.|+|+|+++.|++.+++|++++|+.||.++++|+..++. 
T Consensus       104 s~l~~~~L~~~~~~g~~VLDl~aGpG~kt~~lA~~~~~~g~V~avDis~~~l~~~~~n~~r~g~~nv~~~~~D~~~~~~~  183 (479)
T 2frx_A          104 SMLPVAALFADGNAPQRVMDVAAAPGSKTTQISARMNNEGAILANEFSASRVKVLHANISRCGISNVALTHFDGRVFGAA  183 (479)
T ss_dssp             HHHHHHHHTTTTCCCSEEEESSCTTSHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCCSTTHHHH
T ss_pred             HHHHHHHhCcccCCCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCCHHHhhhh
Confidence            99999999998  999999999999999999999998889999999999999999999999999999999999998764 


Q ss_pred             CCCCCceEEEEEEeccccccccc
Q 019802          307 KDPAYSEVSLIFCIFTWMIIMFH  329 (335)
Q Consensus       307 ~~~~fd~V~~IllD~~cs~~g~~  329 (335)
                      ....||   .|++|+||||+|+.
T Consensus       184 ~~~~fD---~Il~D~PcSg~G~~  203 (479)
T 2frx_A          184 VPEMFD---AILLDAPCSGEGVV  203 (479)
T ss_dssp             STTCEE---EEEEECCCCCGGGG
T ss_pred             ccccCC---EEEECCCcCCcccc
Confidence            334565   59999999999984

>3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A*

Probab=99.97  E-value=9.7e-33  Score=269.90  Aligned_cols=176  Identities=24%  Similarity=0.295  Sum_probs=153.4

Q ss_pred             HHHHHccCCCHHHHHHhhcCCCCC-CCceEEEcCCCCCHHHHHHHHcccccccccCCCCCeEEeCCCCCCCCCcccccce
Q 019802          144 QLLVRNKVKSIEDLMALYQTPDVP-KPRYVRVNTLKMDVDSAVLELGKQFVVQKDDLVPDLLILPPGCDLHVHPLIVNGC  222 (335)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~~~-~p~~lRvN~~k~~~~~~~~~L~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~  222 (335)
                      +|...++. +.+++++   +++.+ ||+++|||++|++++++.+.|  ++.+++.+++++++++.....+..+++|.+|.
T Consensus         9 ~~~~~~g~-e~~~~l~---a~~~~~~~~~lRvN~lk~~~~~~~~~l--~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~G~   82 (464)
T 3m6w_A            9 RMAELLGE-EFPAFLK---ALTEGKRTYGLRVNTLKLPPEAFQRIS--PWPLRPIPWCQEGFYYPEEARPGPHPFFYAGL   82 (464)
T ss_dssp             HHHHHHGG-GHHHHHH---HHHTSCCCCEEEECTTTCCHHHHHHHC--SSCCEEETTEEEEEECCTTCCCSSSHHHHTTS
T ss_pred             HHHHHHHH-HHHHHHH---HcCCCCCCeEEEEcCCCCCHHHHHHHc--CCCceecCCCCceEEECCCCCcccChHHhCCe
Confidence            34444553 3555554   44567 999999999999999998887  56778889999999998766788999999999


Q ss_pred             EEecCchHHHHHHHcCCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCC
Q 019802          223 VFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFL  302 (335)
Q Consensus       223 ~~iQd~~s~l~~~~l~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~  302 (335)
                      +++||.+|++++.++++++|++|||+|||||+||+++++++++.++|+|+|+|+.|++.+++|++++|+. |.++++|+.
T Consensus        83 ~~vQd~ss~l~a~~L~~~~g~~VLDlgaGpG~kt~~LA~~~~~~g~V~AvDis~~~l~~a~~n~~r~G~~-v~~~~~Da~  161 (464)
T 3m6w_A           83 YYIQEPSAQAVGVLLDPKPGERVLDLAAAPGGKTTHLAARMGGKGLLLANEVDGKRVRGLLENVERWGAP-LAVTQAPPR  161 (464)
T ss_dssp             EEECCTTTHHHHHHHCCCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHCCC-CEEECSCHH
T ss_pred             EEEECHHHHHHHHhcCcCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCe-EEEEECCHH
Confidence            9999999999999999999999999999999999999999988899999999999999999999999998 999999998


Q ss_pred             CCCC-CCCCCceEEEEEEeccccccccc
Q 019802          303 NLDP-KDPAYSEVSLIFCIFTWMIIMFH  329 (335)
Q Consensus       303 ~~~~-~~~~fd~V~~IllD~~cs~~g~~  329 (335)
                      +++. ....||   .|++|+||||+|+.
T Consensus       162 ~l~~~~~~~FD---~Il~D~PcSg~G~~  186 (464)
T 3m6w_A          162 ALAEAFGTYFH---RVLLDAPCSGEGMF  186 (464)
T ss_dssp             HHHHHHCSCEE---EEEEECCCCCGGGT
T ss_pred             HhhhhccccCC---EEEECCCcCCcccc
Confidence            8763 234566   59999999999984

>3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium}

Probab=99.97  E-value=9.6e-32  Score=262.53  Aligned_cols=171  Identities=25%  Similarity=0.236  Sum_probs=144.5

Q ss_pred             HHHHccCCCHHHHHHhhcCCCCCCC-ceEEEcCCCCCHHHHHHHHccccccc---ccCCCCCeEEeCCCCCCCCCccccc
Q 019802          145 LLVRNKVKSIEDLMALYQTPDVPKP-RYVRVNTLKMDVDSAVLELGKQFVVQ---KDDLVPDLLILPPGCDLHVHPLIVN  220 (335)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~~p-~~lRvN~~k~~~~~~~~~L~~~~~~~---~~~~~~~~l~~~~~~~~~~~~~~~~  220 (335)
                      |...++. +.+++++   +++.++| +++||||+|+  +++++.+  ++.++   +.+++|++++ .  ..+..+++|.+
T Consensus        16 ~~~~~g~-e~~~~~~---a~~~~~~~~~lRvN~lk~--~~~~~~~--~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~   84 (456)
T 3m4x_A           16 YRLLLGE-EASDFFS---ALEQGSVKKGFRWNPLKP--AGLDMVQ--TYHSEELQPAPYSNEGFL-G--TVNGKSFLHQA   84 (456)
T ss_dssp             HHHHHGG-GHHHHHH---HHHHCCCCCEEECCTTST--THHHHHH--HHTCSSCCBCTTCTTEEE-S--CCCTTSHHHHT
T ss_pred             HHHHhCH-HHHHHHH---HcCCCCCCcEEEEcCccH--HHHHHhc--CCcccccCCCCCCcceEE-c--CCCCCChHHhC
Confidence            3334453 3555554   4456888 9999999999  6666654  45555   8899999988 3  24688999999


Q ss_pred             ceEEecCchHHHHHHHcCCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEecc
Q 019802          221 GCVFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGD  300 (335)
Q Consensus       221 g~~~iQd~~s~l~~~~l~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D  300 (335)
                      |.+++||.+||+++.++++++|++|||+|||||+||+++++++++.++|+|+|+++.|++.+++|++++|+.||.++++|
T Consensus        85 G~~~vQd~ss~l~~~~L~~~~g~~VLDlcaGpGgkt~~lA~~~~~~g~V~AvDis~~rl~~~~~n~~r~g~~nv~v~~~D  164 (456)
T 3m4x_A           85 GYEYSQEPSAMIVGTAAAAKPGEKVLDLCAAPGGKSTQLAAQMKGKGLLVTNEIFPKRAKILSENIERWGVSNAIVTNHA  164 (456)
T ss_dssp             TSCEECCTTTHHHHHHHCCCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHHTCSSEEEECCC
T ss_pred             CcEEEECHHHHHHHHHcCCCCCCEEEEECCCcCHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCC
Confidence            99999999999999999999999999999999999999999998889999999999999999999999999999999999


Q ss_pred             CCCCCC-CCCCCceEEEEEEeccccccccc
Q 019802          301 FLNLDP-KDPAYSEVSLIFCIFTWMIIMFH  329 (335)
Q Consensus       301 ~~~~~~-~~~~fd~V~~IllD~~cs~~g~~  329 (335)
                      +.++.. ....||   .|++|+||||+|+.
T Consensus       165 a~~l~~~~~~~FD---~Il~DaPCSg~G~~  191 (456)
T 3m4x_A          165 PAELVPHFSGFFD---RIVVDAPCSGEGMF  191 (456)
T ss_dssp             HHHHHHHHTTCEE---EEEEECCCCCGGGT
T ss_pred             HHHhhhhccccCC---EEEECCCCCCcccc
Confidence            988653 234565   59999999999984

>3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A

Probab=99.96  E-value=7.1e-30  Score=234.62  Aligned_cols=161  Identities=28%  Similarity=0.386  Sum_probs=139.3

Q ss_pred             CCCCCceEEEcCCCCCHHHHHHHHcc-cccccccCCCCCeEEe-CCCCCCCCCcccccceEEecCchHHHHHHHcCCCCC
Q 019802          165 DVPKPRYVRVNTLKMDVDSAVLELGK-QFVVQKDDLVPDLLIL-PPGCDLHVHPLIVNGCVFLQGKASSMVAAALAPKPG  242 (335)
Q Consensus       165 ~~~~p~~lRvN~~k~~~~~~~~~L~~-~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~g~~~iQd~~s~l~~~~l~~~~g  242 (335)
                      +.++|+|+|||++|++++++.+.|++ |+.+++ ++.++++.+ ..+.++..++.|.+|.+++||.+|++++.++++++|
T Consensus         6 ~~~~~~~~rvn~~~~~~~~~~~~l~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~G~~~~qd~~s~l~~~~l~~~~g   84 (274)
T 3ajd_A            6 KGEKMQFIRVNTLKINPEVLKKRLENKGVVLEK-TFLDYAFEVKKSPFSIGSTPEYLFGYYMPQSISSMIPPIVLNPRED   84 (274)
T ss_dssp             ---CCEEEEECTTTCCHHHHHHHHHTTTCEEEE-CSSTTEEEEEECSSCTTSSHHHHTTSEEECCSGGGHHHHHHCCCTT
T ss_pred             CCCCCeEEEEeCCCCCHHHHHHHHHHCCCeecC-CCCCceEEEecCCCCcccChhhhCCeEEEeCHHHHHHHHHhCCCCc
Confidence            45889999999999999999999977 777777 889999988 344578899999999999999999999999999999


Q ss_pred             CEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCC----CCCCCceEEEEE
Q 019802          243 WKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDP----KDPAYSEVSLIF  318 (335)
Q Consensus       243 ~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~~----~~~~fd~V~~Il  318 (335)
                      ++|||+|||||++|.++++++++.++|+|+|+++.|++.+++|+++.|+.+++++++|+.+++.    ....||   .|+
T Consensus        85 ~~VLDlgaG~G~~t~~la~~~~~~~~v~avD~~~~~l~~~~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~~fD---~Vl  161 (274)
T 3ajd_A           85 DFILDMCAAPGGKTTHLAQLMKNKGTIVAVEISKTRTKALKSNINRMGVLNTIIINADMRKYKDYLLKNEIFFD---KIL  161 (274)
T ss_dssp             CEEEETTCTTCHHHHHHHHHTTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCHHHHHHHHHHTTCCEE---EEE
T ss_pred             CEEEEeCCCccHHHHHHHHHcCCCCEEEEECCCHHHHHHHHHHHHHhCCCcEEEEeCChHhcchhhhhccccCC---EEE
Confidence            9999999999999999999987779999999999999999999999999999999999988754    134565   599


Q ss_pred             Eeccccccccc
Q 019802          319 CIFTWMIIMFH  329 (335)
Q Consensus       319 lD~~cs~~g~~  329 (335)
                      +|+|||++|+.
T Consensus       162 ~d~Pcs~~g~~  172 (274)
T 3ajd_A          162 LDAPCSGNIIK  172 (274)
T ss_dssp             EEECCC-----
T ss_pred             EcCCCCCCccc
Confidence            99999999873

>4fzv_A Putative methyltransferase NSUN4; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens} PDB: 4fp9_A*

Probab=99.94  E-value=9.1e-27  Score=220.73  Aligned_cols=159  Identities=20%  Similarity=0.169  Sum_probs=121.8

Q ss_pred             CCCCCceEEEcCCCCCHHHHHHHHcc-cc-----------cc--------ccc---CCCCCe--EEeCCCCCCCCCcccc
Q 019802          165 DVPKPRYVRVNTLKMDVDSAVLELGK-QF-----------VV--------QKD---DLVPDL--LILPPGCDLHVHPLIV  219 (335)
Q Consensus       165 ~~~~p~~lRvN~~k~~~~~~~~~L~~-~~-----------~~--------~~~---~~~~~~--l~~~~~~~~~~~~~~~  219 (335)
                      ..+++..+|+|+.. +.+++.+.|+. +.           ..        .+.   ..++..  ..+.+.+++..+|.|.
T Consensus        43 ~~~~~~~a~vN~f~-~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~g~~~~~p~~~  121 (359)
T 4fzv_A           43 LSEQKYGALVNNFA-AWDHVSAKLEQLSAKDFVNEAISHWELQSEGGQSAAPSPASWACSPNLRCFTFDRGDISRFPPAR  121 (359)
T ss_dssp             TSCCCCEEEECTTS-CHHHHHHHHHHTTCEEHHHHHHHTTTCCC-----CCSSCHHHHSCSSCCEEECCTTCCCCCCCCC
T ss_pred             cCcchhEEEeccCC-ChHHHHHHHHhccCccchhhhhcccccccccccccCCCcccccCCccceEEecCCCChhcCCCcc
Confidence            45778899999985 56777777654 21           00        000   001111  2223445777888887


Q ss_pred             cce-----EEecCchHHHHHHHcCCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCC---
Q 019802          220 NGC-----VFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGA---  291 (335)
Q Consensus       220 ~g~-----~~iQd~~s~l~~~~l~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~---  291 (335)
                      +|.     |++||.+||+++.+|+++||++|||+||||||||+||+++++ .+.|+|+|++++|++.+++|++++|+   
T Consensus       122 ~g~~~vqd~~iQd~aS~l~~~~L~~~pg~~VLD~CAaPGGKT~~la~~~~-~~~l~A~D~~~~R~~~l~~~l~r~~~~~~  200 (359)
T 4fzv_A          122 PGSLGVMEYYLMDAASLLPVLALGLQPGDIVLDLCAAPGGKTLALLQTGC-CRNLAANDLSPSRIARLQKILHSYVPEEI  200 (359)
T ss_dssp             BCTTSSBSEEEECGGGHHHHHHHCCCTTEEEEESSCTTCHHHHHHHHTTC-EEEEEEECSCHHHHHHHHHHHHHHSCTTT
T ss_pred             cCceeccchhhhCHHHHHHHHHhCCCCCCEEEEecCCccHHHHHHHHhcC-CCcEEEEcCCHHHHHHHHHHHHHhhhhhh
Confidence            775     677779999999999999999999999999999999999764 58999999999999999999999987   


Q ss_pred             ---CcEEEEeccCCCCCC-CCCCCceEEEEEEecccccccc
Q 019802          292 ---ANIEVLHGDFLNLDP-KDPAYSEVSLIFCIFTWMIIMF  328 (335)
Q Consensus       292 ---~ni~~~~~D~~~~~~-~~~~fd~V~~IllD~~cs~~g~  328 (335)
                         .++.+.+.|+..++. ....||   .||||+||||+|+
T Consensus       201 ~~~~~v~v~~~D~~~~~~~~~~~fD---~VLlDaPCSg~g~  238 (359)
T 4fzv_A          201 RDGNQVRVTSWDGRKWGELEGDTYD---RVLVDVPCTTDRH  238 (359)
T ss_dssp             TTSSSEEEECCCGGGHHHHSTTCEE---EEEEECCCCCHHH
T ss_pred             ccCCceEEEeCchhhcchhccccCC---EEEECCccCCCCC
Confidence               368999999988753 234566   4999999999854

>3d3b_A Protein NUSB, N utilization substance protein B; NUSB, NUSE, NUT site, phage lambda, lambdan antitermina antitermination; HET: NHE; 1.30A {Escherichia coli} PDB: 3d3c_A 3imq_A 1ey1_A

Probab=99.60  E-value=1.1e-14  Score=120.23  Aligned_cols=114  Identities=9%  Similarity=0.008  Sum_probs=84.2

Q ss_pred             HHHHHHHHHHHHHHccc-hhhhhhhhhhhhccCCCccCHHHHHHHHHHHHhchHHHHHHHhhccccccccc----chHHH
Q 019802           33 FARREAAKVLRLVLRGD-ARRRAVGSIKSLVYSPSVKNKKATYALVCQTLKHLSIIKQVLDSASILNSKWK----RQEEL  107 (335)
Q Consensus        33 ~aR~~A~~iL~~v~~~~-~~~~~l~~~~~~~~~~~~~dr~l~~~LV~gvlR~~~~LD~il~~~~ll~~~~~----~~~~l  107 (335)
                      .+|+.|+++|++++.++ .+.+.+..... ...++.+|++|+++|||||+||+..||++|.+  +++.++.    ..+.+
T Consensus        10 ~aR~~A~~~L~~~~~~~~~~~~~~~~~~~-~~~l~~~d~~~~~~Lv~gvl~~~~~lD~~I~~--~l~~~l~rl~~~~r~i   86 (141)
T 3d3b_A           10 RARECAVQALYSWQLSQNDIADVEYQFLA-EQDVKDVDVLYFRELLAGVATNTAYLDGLMKP--YLSRLLEELGQVEKAV   86 (141)
T ss_dssp             HHHHHHHHHHHHHHHHCCCHHHHHHHHHH-HSCCTTSCHHHHHHHHHHHHHTHHHHHHHHGG--GGTTCSSCCCHHHHHH
T ss_pred             HHHHHHHHHHHHHHccCCCHHHHHHHHHH-hccCCHHHHHHHHHHHHHHHHhHHHHHHHHHH--HcCCCHHHcCHHHHHH
Confidence            48999999999997654 34443322111 13456789999999999999999999999998  4554433    24799


Q ss_pred             HHHHHHHHHhcCCCCchhHHHHHHHHhhhh---HHHHHHHHHHHc
Q 019802          108 VYILTYDILFGQEISLVGDAEKFLMLHKGA---IQLALAQLLVRN  149 (335)
Q Consensus       108 Lrl~lyqllf~~~iP~~a~v~~~v~~~k~~---~~~~l~~~~~~~  149 (335)
                      ||+|+|||+|++++|++++++|.|+..|..   -..+|.+.+++.
T Consensus        87 Lrla~yEll~~~~iP~~vaInEaVelaK~~~~~~~~~fVNgVLr~  131 (141)
T 3d3b_A           87 LRIALYELSKRSDVPYKVAINEAIELAKSFGAEDSHKFVNGVLDK  131 (141)
T ss_dssp             HHHHHHHHHHCTTSCHHHHHHHHHHHHHHHSCTTHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCCCCchhhHHHHHHHHHHHCCCCchHHHHHHHHH
Confidence            999999999998899999999999876531   123455554443

>1tzv_A NUSB protein, N utilization substance protein B homolog; RNA-protein interaction, transcriptional antitermination, transcription regulation; 1.35A {Thermotoga maritima} SCOP: a.79.1.1 PDB: 1tzu_A 1tzt_A 1tzw_A 1tzx_A*

Probab=99.59  E-value=9.4e-15  Score=120.77  Aligned_cols=113  Identities=14%  Similarity=0.150  Sum_probs=85.0

Q ss_pred             HHHHHHHHHHHHHHccch-hhh-hhhhhhhhccCCCccCHHHHHHHHHHHHhchHHHHHHHhhcccccc-ccc----chH
Q 019802           33 FARREAAKVLRLVLRGDA-RRR-AVGSIKSLVYSPSVKNKKATYALVCQTLKHLSIIKQVLDSASILNS-KWK----RQE  105 (335)
Q Consensus        33 ~aR~~A~~iL~~v~~~~~-~~~-~l~~~~~~~~~~~~~dr~l~~~LV~gvlR~~~~LD~il~~~~ll~~-~~~----~~~  105 (335)
                      .+|+.|+++|+++..++. +.+ .+.....  ..++.+|++|+++|||||+||+..||++|.+  ++++ ++.    ..+
T Consensus         7 ~aR~~A~~~L~~~~~~~~~~~~~~l~~~~~--~~l~~~d~~~~~~Lv~gvl~~~~~lD~~I~~--~l~~w~l~rl~~~~r   82 (142)
T 1tzv_A            7 RMRLAVFKALFQHEFRRDEDLEQILEEILD--ETYDKKAKEDARRYIRGIKENLSMIDDLISR--YLEKWSLNRLSVVDR   82 (142)
T ss_dssp             HHHHHHHHHHHHHTTCTTSCHHHHHHHHCC--TTSCHHHHHHHHHHHHHHHHTHHHHHHHHHT--TCSSSCGGGSCHHHH
T ss_pred             HHHHHHHHHHHHHHhcCCCCHHHHHHHHHH--hcCCHHHHHHHHHHHHHHHHHHHHHHHHHHH--HcCCCChHHCCHHHH
Confidence            489999999999988766 544 3322211  3356689999999999999999999999998  4554 332    247


Q ss_pred             HHHHHHHHHHHhcCCCCchhHHHHHHHHhhh---hHHHHHHHHHHHc
Q 019802          106 ELVYILTYDILFGQEISLVGDAEKFLMLHKG---AIQLALAQLLVRN  149 (335)
Q Consensus       106 ~lLrl~lyqllf~~~iP~~a~v~~~v~~~k~---~~~~~l~~~~~~~  149 (335)
                      ++||+|+|||+|++++|++++++|.|+..|.   .-..+|.+.+.+.
T Consensus        83 ~iLrla~yEl~~~~~iP~~vaInEaVelaK~~~~~~~~~fVNgVL~~  129 (142)
T 1tzv_A           83 NVLRLATYELLFEKDIPIEVTIDEAIEIAKRYGTENSGKFVNGILDR  129 (142)
T ss_dssp             HHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHCCCcchhhHHHHHHH
Confidence            9999999999999889999999999987653   1223455554443

>3r2d_A Protein NUSB, N utilization substance protein B; cross species NUSB-NUSE-RNA interaction; 2.20A {Aquifex aeolicus} PDB: 2jr0_A 3r2c_A* 4eya_A

Probab=99.57  E-value=1.3e-14  Score=120.71  Aligned_cols=114  Identities=11%  Similarity=0.007  Sum_probs=83.9

Q ss_pred             HHHHHHHHHHHHHHccchhhh-hhhhhhhhccC-CCccCHHHHHHHHHHHHhchHHHHHHHhhcccccc-ccc----chH
Q 019802           33 FARREAAKVLRLVLRGDARRR-AVGSIKSLVYS-PSVKNKKATYALVCQTLKHLSIIKQVLDSASILNS-KWK----RQE  105 (335)
Q Consensus        33 ~aR~~A~~iL~~v~~~~~~~~-~l~~~~~~~~~-~~~~dr~l~~~LV~gvlR~~~~LD~il~~~~ll~~-~~~----~~~  105 (335)
                      .+|+.|+++|++++.++.+.+ ++..... ... ++.+|++|+++|||||+||+..||++|.+  ++++ ++.    ..+
T Consensus         7 ~aR~~A~q~L~~~~~~~~~~~~~l~~~~~-~~~~~~~~dr~~~~~lv~gvl~~~~~lD~~i~~--~l~~w~~~rl~~~~r   83 (149)
T 3r2d_A            7 GARDTAFLVLYRWDLRGENPGELFKEVVE-EKNIKNKDAYEYAKKLVDTAVRHIEEIDSIIEK--HLKGWSIDRLGYVER   83 (149)
T ss_dssp             HHHHHHHHHHHHHHHHCCCHHHHHHHHHH-HHTCCCHHHHHHHHHHHHHHHHTHHHHHHHHHT--TC---CGGGSCHHHH
T ss_pred             HHHHHHHHHHHHHHhcCCCHHHHHHHHHH-hcccCCHHHHHHHHHHHHHHHHhHHHHHHHHHH--HhcCCCccccCHHHH
Confidence            589999999999987655544 3332211 122 56789999999999999999999999998  4554 332    247


Q ss_pred             HHHHHHHHHHHhcCCCCchhHHHHHHHHhhhh---HHHHHHHHHHHc
Q 019802          106 ELVYILTYDILFGQEISLVGDAEKFLMLHKGA---IQLALAQLLVRN  149 (335)
Q Consensus       106 ~lLrl~lyqllf~~~iP~~a~v~~~v~~~k~~---~~~~l~~~~~~~  149 (335)
                      .+||+|+|||+|++++|+++++++.|+..|..   -..+|.+.+++.
T Consensus        84 ~iLrla~yEl~~~~~iP~~vaInEaVelaK~~~~~~~~~fVNgVLr~  130 (149)
T 3r2d_A           84 NALRLGVAELIFLKSKEPGRVFIDIVDLVKKYADEKAGKFVNGVLSA  130 (149)
T ss_dssp             HHHHHHHHHHTTSCCSCHHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCCCCeehHHHHHHHHHHhCCCCccccchHHhhH
Confidence            89999999999998899999999999876531   123455554443

>1eyv_A NUSB protein, N-utilizing substance protein B homolog; helical bundle, structural genomics, PSI, protein structure initiative; 1.60A {Mycobacterium tuberculosis} SCOP: a.79.1.1

Probab=99.50  E-value=1.9e-13  Score=114.52  Aligned_cols=118  Identities=12%  Similarity=0.099  Sum_probs=84.2

Q ss_pred             HHHHHHHHHHHHHHccchh-hhhhhhhhhhc-cC-CCccCHHHHHHHHHHHHhchHHHHHHHhhcccccc-ccc----ch
Q 019802           33 FARREAAKVLRLVLRGDAR-RRAVGSIKSLV-YS-PSVKNKKATYALVCQTLKHLSIIKQVLDSASILNS-KWK----RQ  104 (335)
Q Consensus        33 ~aR~~A~~iL~~v~~~~~~-~~~l~~~~~~~-~~-~~~~dr~l~~~LV~gvlR~~~~LD~il~~~~ll~~-~~~----~~  104 (335)
                      .+|+.|+++|++++.++.. ...+.....+. .+ ....+++|+++|||||+||+..||++|.+  ++++ ++.    ..
T Consensus        12 ~aR~~Alq~L~~~~~~~~~~~~~l~~~~~l~~~d~~~~~~~~~~~~lv~gvl~~~~~lD~~i~~--~l~~w~l~rl~~~~   89 (156)
T 1eyv_A           12 QARKRAVALLFEAEVRGISAAEVVDTRAALAEAKPDIARLHPYTAAVARGVSEHAAHIDDLITA--HLRGWTLDRLPAVD   89 (156)
T ss_dssp             HHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTSCCCCHHHHHHHHHHHHTHHHHHHHHHT--TSTTCCGGGSCHHH
T ss_pred             HHHHHHHHHHHHHHhcCCCHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHhHHHHHHHHHH--HhcCCChhhCCHHH
Confidence            4899999999999875533 33332211111 11 12356999999999999999999999998  4554 322    24


Q ss_pred             HHHHHHHHHHHHhcCCCCchhHHHHHHHHhhhh---HHHHHHHHHHHccCC
Q 019802          105 EELVYILTYDILFGQEISLVGDAEKFLMLHKGA---IQLALAQLLVRNKVK  152 (335)
Q Consensus       105 ~~lLrl~lyqllf~~~iP~~a~v~~~v~~~k~~---~~~~l~~~~~~~~~~  152 (335)
                      +.+||+|+|||+|++++|.+++++|.|+..|..   -..+|.+.+++....
T Consensus        90 r~iLrla~yel~~~~~iP~~v~InEaVelak~~~~~~~~~fVNgVLr~i~r  140 (156)
T 1eyv_A           90 RAILRVSVWELLHAADVPEPVVVDEAVQLAKELSTDDSPGFVNGVLGQVML  140 (156)
T ss_dssp             HHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHSCTTHHHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHhCCCccccchHHHHHHHHH
Confidence            799999999999998899999999999876531   123566666665443

>1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13

Probab=99.46  E-value=1.5e-14  Score=132.07  Aligned_cols=158  Identities=12%  Similarity=0.119  Sum_probs=95.8

Q ss_pred             hcCCCCCCCceEEEcCCCCCHHHHH-HHHcc-cccccccCCCCCeEEeCCCCCCCCCcccccceEEecCchHHHHHHHcC
Q 019802          161 YQTPDVPKPRYVRVNTLKMDVDSAV-LELGK-QFVVQKDDLVPDLLILPPGCDLHVHPLIVNGCVFLQGKASSMVAAALA  238 (335)
Q Consensus       161 ~~~~~~~~p~~lRvN~~k~~~~~~~-~~L~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~iQd~~s~l~~~~l~  238 (335)
                      +.+++..+++|.|+|+.+.+.++.. +.|.. ++..... .....+.............+..+...+++..++++...++
T Consensus        29 ~~~~~~~~~~~~r~~~~~~~~~~~~~~~l~g~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  107 (275)
T 1yb2_A           29 LVSEDEYGKFDESTNSILVKGKMHHLGISRVIEPGDELI-VSGKSFIVSDFSPMYFGRVIRRNTQIISEIDASYIIMRCG  107 (275)
T ss_dssp             EECSSCCEEEETTTTEEEC-CCEEECC-CCCCCTTCEEE-ETTEEEEEECCCGGGHHHHC------------------CC
T ss_pred             EEecCCCCceeccccceeccCCccchhheeCCCCCcEEE-ECCeEEEEeCCCHHHHHhhccccccccChhhHHHHHHHcC
Confidence            4567778999999997665443321 11111 1100011 1112222212222223345566777788888888888899


Q ss_pred             CCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHh-CCCcEEEEeccCCCCCCCCCCCceEEEE
Q 019802          239 PKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLS-GAANIEVLHGDFLNLDPKDPAYSEVSLI  317 (335)
Q Consensus       239 ~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~-g~~ni~~~~~D~~~~~~~~~~fd~V~~I  317 (335)
                      +.++.+|||+|||+|..+.++++.+.+.++|+++|+++.+++.+++++++. |..++++.++|+.+. ..+..||   .|
T Consensus       108 ~~~~~~VLD~G~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~g~~~v~~~~~d~~~~-~~~~~fD---~V  183 (275)
T 1yb2_A          108 LRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIADF-ISDQMYD---AV  183 (275)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTTC-CCSCCEE---EE
T ss_pred             CCCcCEEEEecCCCCHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECchhcc-CcCCCcc---EE
Confidence            999999999999999999999998666789999999999999999999998 888999999999883 3344565   47


Q ss_pred             EEeccc
Q 019802          318 FCIFTW  323 (335)
Q Consensus       318 llD~~c  323 (335)
                      ++|+|.
T Consensus       184 i~~~~~  189 (275)
T 1yb2_A          184 IADIPD  189 (275)
T ss_dssp             EECCSC
T ss_pred             EEcCcC
Confidence            778763

>3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E*

Probab=99.42  E-value=1.4e-12  Score=116.43  Aligned_cols=83  Identities=22%  Similarity=0.220  Sum_probs=68.0

Q ss_pred             CCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCceEEEEE
Q 019802          239 PKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVSLIF  318 (335)
Q Consensus       239 ~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~~~~~~fd~V~~Il  318 (335)
                      ++||++|||+|||||++|.++++.++++|+|+|+|+++.|++.+.+.+++.  .||.++++|+............+|.|+
T Consensus        74 l~~g~~VLDlG~GtG~~t~~la~~v~~~G~V~avD~s~~~l~~l~~~a~~r--~nv~~i~~Da~~~~~~~~~~~~~D~I~  151 (232)
T 3id6_C           74 IRKGTKVLYLGAASGTTISHVSDIIELNGKAYGVEFSPRVVRELLLVAQRR--PNIFPLLADARFPQSYKSVVENVDVLY  151 (232)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHHHHHTTTSEEEEEECCHHHHHHHHHHHHHC--TTEEEEECCTTCGGGTTTTCCCEEEEE
T ss_pred             CCCCCEEEEEeecCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhc--CCeEEEEcccccchhhhccccceEEEE
Confidence            789999999999999999999999988999999999999997777666553  589999999987543222123566799


Q ss_pred             Eeccc
Q 019802          319 CIFTW  323 (335)
Q Consensus       319 lD~~c  323 (335)
                      +|++.
T Consensus       152 ~d~a~  156 (232)
T 3id6_C          152 VDIAQ  156 (232)
T ss_dssp             ECCCC
T ss_pred             ecCCC
Confidence            99653

>1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A*

Probab=99.41  E-value=4.4e-12  Score=111.79  Aligned_cols=137  Identities=15%  Similarity=0.131  Sum_probs=96.1

Q ss_pred             CCCHHHHHHHHcc-ccc-----------ccccCCCCCeEEeCCCCCCCCCcccccceEEecCchH-HHHHHHcC--CCCC
Q 019802          178 KMDVDSAVLELGK-QFV-----------VQKDDLVPDLLILPPGCDLHVHPLIVNGCVFLQGKAS-SMVAAALA--PKPG  242 (335)
Q Consensus       178 k~~~~~~~~~L~~-~~~-----------~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~iQd~~s-~l~~~~l~--~~~g  242 (335)
                      .++.+++++.|.+ |+.           +....+.+..       .....+.+..+...++++.. ..+...+.  +.++
T Consensus         6 ~~~~~~l~~~l~~~g~~~~~~~~~a~~~~~r~~f~~~~-------~y~~~~~~~~~~~~~~~p~~~~~~l~~l~~~~~~~   78 (226)
T 1i1n_A            6 GASHSELIHNLRKNGIIKTDKVFEVMLATDRSHYAKCN-------PYMDSPQSIGFQATISAPHMHAYALELLFDQLHEG   78 (226)
T ss_dssp             CSSHHHHHHHHHHTTSCCSHHHHHHHHTSCGGGTCSSC-------TTSSSCEEEETTEEECCHHHHHHHHHHTTTTSCTT
T ss_pred             CchHHHHHHHHHHcCCcCCHHHHHHHHhCCHHHcCCCc-------cCCCCccccCCCceecCHHHHHHHHHHHHhhCCCC
Confidence            3567788887765 542           2222222222       22333444444455665542 23334454  7889


Q ss_pred             CEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhC-----CCcEEEEeccCCCCCCCCCCCceEEEE
Q 019802          243 WKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSG-----AANIEVLHGDFLNLDPKDPAYSEVSLI  317 (335)
Q Consensus       243 ~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g-----~~ni~~~~~D~~~~~~~~~~fd~V~~I  317 (335)
                      .+|||+|||+|.++.++++.+++.++|+++|+++.+++.+++++++.|     ..++.++++|+....+....||.   |
T Consensus        79 ~~vLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~---i  155 (226)
T 1i1n_A           79 AKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMGYAEEAPYDA---I  155 (226)
T ss_dssp             CEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGCCGGGCCEEE---E
T ss_pred             CEEEEEcCCcCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhcccccCCCcEEEEECCcccCcccCCCcCE---E
Confidence            999999999999999999998766899999999999999999999976     46899999999876554455664   7


Q ss_pred             EEecccc
Q 019802          318 FCIFTWM  324 (335)
Q Consensus       318 llD~~cs  324 (335)
                      +++.+|.
T Consensus       156 ~~~~~~~  162 (226)
T 1i1n_A          156 HVGAAAP  162 (226)
T ss_dssp             EECSBBS
T ss_pred             EECCchH
Confidence            8887763

>4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix}

Probab=99.36  E-value=3.4e-12  Score=113.78  Aligned_cols=100  Identities=20%  Similarity=0.194  Sum_probs=80.8

Q ss_pred             EecCchHHHHHHH------cCCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEE
Q 019802          224 FLQGKASSMVAAA------LAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVL  297 (335)
Q Consensus       224 ~iQd~~s~l~~~~------l~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~  297 (335)
                      .|.-.-|.+.+.+      +.++||++|||+|||+|..+.++|+.++++|+|+|+|+++.|++.+++++++.  .|+..+
T Consensus        54 ~w~p~rsklaa~i~~gl~~l~ikpG~~VldlG~G~G~~~~~la~~VG~~G~V~avD~s~~~~~~l~~~a~~~--~ni~~V  131 (233)
T 4df3_A           54 EWNAYRSKLAAALLKGLIELPVKEGDRILYLGIASGTTASHMSDIIGPRGRIYGVEFAPRVMRDLLTVVRDR--RNIFPI  131 (233)
T ss_dssp             ECCTTTCHHHHHHHTTCSCCCCCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEECCHHHHHHHHHHSTTC--TTEEEE
T ss_pred             eECCCchHHHHHHHhchhhcCCCCCCEEEEecCcCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhHhh--cCeeEE
Confidence            3433345555544      45899999999999999999999999999999999999999999999988765  489999


Q ss_pred             eccCCCCCCCCCCCceEEEEEEeccccc
Q 019802          298 HGDFLNLDPKDPAYSEVSLIFCIFTWMI  325 (335)
Q Consensus       298 ~~D~~~~~~~~~~fd~V~~IllD~~cs~  325 (335)
                      .+|+..+.......+.||+|++|++...
T Consensus       132 ~~d~~~p~~~~~~~~~vDvVf~d~~~~~  159 (233)
T 4df3_A          132 LGDARFPEKYRHLVEGVDGLYADVAQPE  159 (233)
T ss_dssp             ESCTTCGGGGTTTCCCEEEEEECCCCTT
T ss_pred             EEeccCccccccccceEEEEEEeccCCh
Confidence            9999876543333466888999988764

>3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes}

Probab=99.29  E-value=1.5e-11  Score=111.01  Aligned_cols=103  Identities=17%  Similarity=0.258  Sum_probs=84.7

Q ss_pred             ccceEEecCch-------HHHHHHHcCCC-CCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhC
Q 019802          219 VNGCVFLQGKA-------SSMVAAALAPK-PGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSG  290 (335)
Q Consensus       219 ~~g~~~iQd~~-------s~l~~~~l~~~-~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g  290 (335)
                      ..+...+|+..       +.+++..+.+. ++.+|||+|||+|..+..+++..  .++|+++|+++.+++.+++|++..|
T Consensus        19 ~~~~~i~q~~~~~~~~~d~~ll~~~~~~~~~~~~vLDlG~G~G~~~~~la~~~--~~~v~gvDi~~~~~~~a~~n~~~~~   96 (259)
T 3lpm_A           19 AENLRIIQSPSVFSFSIDAVLLAKFSYLPIRKGKIIDLCSGNGIIPLLLSTRT--KAKIVGVEIQERLADMAKRSVAYNQ   96 (259)
T ss_dssp             TTTEEEEEBTTTBCCCHHHHHHHHHCCCCSSCCEEEETTCTTTHHHHHHHTTC--CCEEEEECCSHHHHHHHHHHHHHTT
T ss_pred             CCCEEEEeCCCCccCcHHHHHHHHHhcCCCCCCEEEEcCCchhHHHHHHHHhc--CCcEEEEECCHHHHHHHHHHHHHCC
Confidence            34556667666       78888888888 99999999999999999999873  2499999999999999999999999


Q ss_pred             CC-cEEEEeccCCCCCC--CCCCCceEEEEEEecccccc
Q 019802          291 AA-NIEVLHGDFLNLDP--KDPAYSEVSLIFCIFTWMII  326 (335)
Q Consensus       291 ~~-ni~~~~~D~~~~~~--~~~~fd~V~~IllD~~cs~~  326 (335)
                      +. +++++++|+.++..  ...+||   .|++|||+...
T Consensus        97 ~~~~v~~~~~D~~~~~~~~~~~~fD---~Ii~npPy~~~  132 (259)
T 3lpm_A           97 LEDQIEIIEYDLKKITDLIPKERAD---IVTCNPPYFAT  132 (259)
T ss_dssp             CTTTEEEECSCGGGGGGTSCTTCEE---EEEECCCC---
T ss_pred             CcccEEEEECcHHHhhhhhccCCcc---EEEECCCCCCC
Confidence            86 59999999998764  234555   69999998755

>1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A*

Probab=99.27  E-value=6.6e-12  Score=116.26  Aligned_cols=93  Identities=15%  Similarity=0.174  Sum_probs=77.7

Q ss_pred             HHHHHcCCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCC--CCC
Q 019802          232 MVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDP--KDP  309 (335)
Q Consensus       232 l~~~~l~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~~--~~~  309 (335)
                      .+...+.+++|++|||+|||+|+.+..+++..+ .++|+++|+|+.+++.+++|++..| .+++++++|+.+++.  ...
T Consensus        17 e~l~~L~~~~g~~vLD~g~G~G~~s~~la~~~~-~~~VigvD~d~~al~~A~~~~~~~g-~~v~~v~~d~~~l~~~l~~~   94 (301)
T 1m6y_A           17 EVIEFLKPEDEKIILDCTVGEGGHSRAILEHCP-GCRIIGIDVDSEVLRIAEEKLKEFS-DRVSLFKVSYREADFLLKTL   94 (301)
T ss_dssp             HHHHHHCCCTTCEEEETTCTTSHHHHHHHHHCT-TCEEEEEESCHHHHHHHHHHTGGGT-TTEEEEECCGGGHHHHHHHT
T ss_pred             HHHHhcCCCCCCEEEEEeCCcCHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHhcC-CcEEEEECCHHHHHHHHHhc
Confidence            345677889999999999999999999999875 5899999999999999999999888 789999999988752  110


Q ss_pred             CCceEEEEEEecccccc
Q 019802          310 AYSEVSLIFCIFTWMII  326 (335)
Q Consensus       310 ~fd~V~~IllD~~cs~~  326 (335)
                      ....+|.|++|+|||..
T Consensus        95 g~~~~D~Vl~D~gvSs~  111 (301)
T 1m6y_A           95 GIEKVDGILMDLGVSTY  111 (301)
T ss_dssp             TCSCEEEEEEECSCCHH
T ss_pred             CCCCCCEEEEcCccchh
Confidence            11345679999999864

>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0

Probab=99.27  E-value=5.6e-11  Score=103.05  Aligned_cols=99  Identities=15%  Similarity=0.134  Sum_probs=80.9

Q ss_pred             cceEEecCchHHHHHHHcCCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEec
Q 019802          220 NGCVFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHG  299 (335)
Q Consensus       220 ~g~~~iQd~~s~l~~~~l~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~  299 (335)
                      +|.+ .++.....+...+.+.++.+|||+|||+|..+..++... +.++|+++|+++.+++.+++++++.|+.+++++++
T Consensus        20 ~g~~-~~~~i~~~~l~~l~~~~~~~vLDiG~G~G~~~~~la~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~   97 (204)
T 3e05_A           20 KKLI-TKQEVRAVTLSKLRLQDDLVMWDIGAGSASVSIEASNLM-PNGRIFALERNPQYLGFIRDNLKKFVARNVTLVEA   97 (204)
T ss_dssp             TTTS-CCHHHHHHHHHHTTCCTTCEEEEETCTTCHHHHHHHHHC-TTSEEEEEECCHHHHHHHHHHHHHHTCTTEEEEEC
T ss_pred             CCcC-ChHHHHHHHHHHcCCCCCCEEEEECCCCCHHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeC
Confidence            3666 444444555667788999999999999999999999884 46899999999999999999999999989999999


Q ss_pred             cCCCCCCCCCCCceEEEEEEeccc
Q 019802          300 DFLNLDPKDPAYSEVSLIFCIFTW  323 (335)
Q Consensus       300 D~~~~~~~~~~fd~V~~IllD~~c  323 (335)
                      |+.+.......||.   |+++.+.
T Consensus        98 d~~~~~~~~~~~D~---i~~~~~~  118 (204)
T 3e05_A           98 FAPEGLDDLPDPDR---VFIGGSG  118 (204)
T ss_dssp             CTTTTCTTSCCCSE---EEESCCT
T ss_pred             ChhhhhhcCCCCCE---EEECCCC
Confidence            99776554456775   6776543

>3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A*

Probab=99.22  E-value=9.1e-12  Score=110.84  Aligned_cols=102  Identities=19%  Similarity=0.248  Sum_probs=82.1

Q ss_pred             ceEEecCc--hHHHHHHHcCCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCC-CcEEEE
Q 019802          221 GCVFLQGK--ASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGA-ANIEVL  297 (335)
Q Consensus       221 g~~~iQd~--~s~l~~~~l~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~-~ni~~~  297 (335)
                      +++..+..  ...++..+....++.+|||+|||+|+.+.+++..   .++|+++|+|+.+++.++++++..|+ .+++++
T Consensus        56 ~~~~~~~~~~~~~l~~~~~~~~~~~~vLD~gcG~G~~~~~la~~---~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~  132 (241)
T 3gdh_A           56 GWFSVTPEKIAEHIAGRVSQSFKCDVVVDAFCGVGGNTIQFALT---GMRVIAIDIDPVKIALARNNAEVYGIADKIEFI  132 (241)
T ss_dssp             HHHHCCCHHHHHHHHHHHHHHSCCSEEEETTCTTSHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEE
T ss_pred             ceeecCHHHHHHHHHHHhhhccCCCEEEECccccCHHHHHHHHc---CCEEEEEECCHHHHHHHHHHHHHcCCCcCeEEE
Confidence            33444444  4444444555558999999999999999999986   37999999999999999999999998 589999


Q ss_pred             eccCCCCCCCCCCCceEEEEEEeccccccccc
Q 019802          298 HGDFLNLDPKDPAYSEVSLIFCIFTWMIIMFH  329 (335)
Q Consensus       298 ~~D~~~~~~~~~~fd~V~~IllD~~cs~~g~~  329 (335)
                      ++|+.+++ .+.+||.   |++|+||...+..
T Consensus       133 ~~d~~~~~-~~~~~D~---v~~~~~~~~~~~~  160 (241)
T 3gdh_A          133 CGDFLLLA-SFLKADV---VFLSPPWGGPDYA  160 (241)
T ss_dssp             ESCHHHHG-GGCCCSE---EEECCCCSSGGGG
T ss_pred             ECChHHhc-ccCCCCE---EEECCCcCCcchh
Confidence            99998876 3456885   8899999876653

>3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus}

Probab=99.22  E-value=1.1e-10  Score=101.86  Aligned_cols=88  Identities=19%  Similarity=0.277  Sum_probs=74.1

Q ss_pred             chHHHHHHHcCCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCC-cEEEEeccCCCCCC
Q 019802          228 KASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAA-NIEVLHGDFLNLDP  306 (335)
Q Consensus       228 ~~s~l~~~~l~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~-ni~~~~~D~~~~~~  306 (335)
                      .-...+...+++.++++|||+|||+|..+..++..   .++|+++|+++.+++.+++++++.|+. +++++++|+.+..+
T Consensus        42 ~~~~~~l~~l~~~~~~~vLDlGcG~G~~~~~la~~---~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~  118 (204)
T 3njr_A           42 PMRALTLAALAPRRGELLWDIGGGSGSVSVEWCLA---GGRAITIEPRADRIENIQKNIDTYGLSPRMRAVQGTAPAALA  118 (204)
T ss_dssp             HHHHHHHHHHCCCTTCEEEEETCTTCHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCTTGGGT
T ss_pred             HHHHHHHHhcCCCCCCEEEEecCCCCHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEeCchhhhcc
Confidence            33445566778899999999999999999999987   479999999999999999999999998 89999999988544


Q ss_pred             CCCCCceEEEEEEec
Q 019802          307 KDPAYSEVSLIFCIF  321 (335)
Q Consensus       307 ~~~~fd~V~~IllD~  321 (335)
                      ....||.   |+++.
T Consensus       119 ~~~~~D~---v~~~~  130 (204)
T 3njr_A          119 DLPLPEA---VFIGG  130 (204)
T ss_dssp             TSCCCSE---EEECS
T ss_pred             cCCCCCE---EEECC
Confidence            4456875   66654

>3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C*

Probab=99.21  E-value=6.5e-11  Score=106.15  Aligned_cols=96  Identities=17%  Similarity=0.259  Sum_probs=81.4

Q ss_pred             ecCchHHHHHHHcCCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCc-EEEEeccCCC
Q 019802          225 LQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAAN-IEVLHGDFLN  303 (335)
Q Consensus       225 iQd~~s~l~~~~l~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~n-i~~~~~D~~~  303 (335)
                      +....+..+...+++.+|.+|||+|||+|..+.+++..+++.++|+++|+++.+++.++++++..|+.+ ++++++|+.+
T Consensus        77 ~~~~~~~~i~~~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~  156 (255)
T 3mb5_A           77 VHPKDAALIVAYAGISPGDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAKLAWENIKWAGFDDRVTIKLKDIYE  156 (255)
T ss_dssp             CCHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHTCTTTEEEECSCGGG
T ss_pred             ccHhHHHHHHHhhCCCCCCEEEEecCCchHHHHHHHHHhCCCeEEEEEecCHHHHHHHHHHHHHcCCCCceEEEECchhh
Confidence            334455567778889999999999999999999999998777999999999999999999999999987 9999999986


Q ss_pred             CCCCCCCCceEEEEEEecccc
Q 019802          304 LDPKDPAYSEVSLIFCIFTWM  324 (335)
Q Consensus       304 ~~~~~~~fd~V~~IllD~~cs  324 (335)
                      . ..+.+||   .|++|+|+.
T Consensus       157 ~-~~~~~~D---~v~~~~~~~  173 (255)
T 3mb5_A          157 G-IEEENVD---HVILDLPQP  173 (255)
T ss_dssp             C-CCCCSEE---EEEECSSCG
T ss_pred             c-cCCCCcC---EEEECCCCH
Confidence            5 3334455   588898865

>3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli}

Probab=99.21  E-value=9.5e-11  Score=101.89  Aligned_cols=97  Identities=20%  Similarity=0.175  Sum_probs=81.9

Q ss_pred             cceEEecCchHHHHHHHcCCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEec
Q 019802          220 NGCVFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHG  299 (335)
Q Consensus       220 ~g~~~iQd~~s~l~~~~l~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~  299 (335)
                      .|.+..+......+...+.+.++.+|||+|||+|..+.++++.   .++|+++|+++.+++.+++++++.|+.++++.++
T Consensus        56 ~~~~~~~~~~~~~~~~~l~~~~~~~vLdiG~G~G~~~~~la~~---~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~  132 (210)
T 3lbf_A           56 QGQTISQPYMVARMTELLELTPQSRVLEIGTGSGYQTAILAHL---VQHVCSVERIKGLQWQARRRLKNLDLHNVSTRHG  132 (210)
T ss_dssp             TSCEECCHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHH---SSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEES
T ss_pred             CCCEeCCHHHHHHHHHhcCCCCCCEEEEEcCCCCHHHHHHHHh---CCEEEEEecCHHHHHHHHHHHHHcCCCceEEEEC
Confidence            3555566666666777888999999999999999999999988   4799999999999999999999999999999999


Q ss_pred             cCCCCCCCCCCCceEEEEEEecc
Q 019802          300 DFLNLDPKDPAYSEVSLIFCIFT  322 (335)
Q Consensus       300 D~~~~~~~~~~fd~V~~IllD~~  322 (335)
                      |+.+..+.+.+||.   |+++..
T Consensus       133 d~~~~~~~~~~~D~---i~~~~~  152 (210)
T 3lbf_A          133 DGWQGWQARAPFDA---IIVTAA  152 (210)
T ss_dssp             CGGGCCGGGCCEEE---EEESSB
T ss_pred             CcccCCccCCCccE---EEEccc
Confidence            99887665566764   777643

>3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus}

Probab=99.20  E-value=4.3e-11  Score=113.13  Aligned_cols=95  Identities=19%  Similarity=0.226  Sum_probs=82.3

Q ss_pred             CchHHHHHHHcCCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCC
Q 019802          227 GKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDP  306 (335)
Q Consensus       227 d~~s~l~~~~l~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~~  306 (335)
                      ..-+..+..++.+.++..|||+|||+|..+..++...++..+|+++|+++.+++.+++|+++.|+.+|++.++|+.++++
T Consensus       189 ~~la~~l~~~~~~~~~~~vLD~gcGsG~~~ie~a~~~~~~~~v~g~Di~~~~i~~a~~n~~~~g~~~i~~~~~D~~~~~~  268 (354)
T 3tma_A          189 PVLAQALLRLADARPGMRVLDPFTGSGTIALEAASTLGPTSPVYAGDLDEKRLGLAREAALASGLSWIRFLRADARHLPR  268 (354)
T ss_dssp             HHHHHHHHHHTTCCTTCCEEESSCTTSHHHHHHHHHHCTTSCEEEEESCHHHHHHHHHHHHHTTCTTCEEEECCGGGGGG
T ss_pred             HHHHHHHHHHhCCCCCCEEEeCCCCcCHHHHHHHHhhCCCceEEEEECCHHHHHHHHHHHHHcCCCceEEEeCChhhCcc
Confidence            33445556677888999999999999999999999864568999999999999999999999999899999999999887


Q ss_pred             CCCCCceEEEEEEecccc
Q 019802          307 KDPAYSEVSLIFCIFTWM  324 (335)
Q Consensus       307 ~~~~fd~V~~IllD~~cs  324 (335)
                      ....||   .|++|||+.
T Consensus       269 ~~~~~D---~Ii~npPyg  283 (354)
T 3tma_A          269 FFPEVD---RILANPPHG  283 (354)
T ss_dssp             TCCCCS---EEEECCCSC
T ss_pred             ccCCCC---EEEECCCCc
Confidence            666676   599999984

>2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51

Probab=99.20  E-value=1.7e-11  Score=115.06  Aligned_cols=107  Identities=17%  Similarity=0.122  Sum_probs=87.7

Q ss_pred             CcccccceEEecCchHHHHHHHcC-CCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCc
Q 019802          215 HPLIVNGCVFLQGKASSMVAAALA-PKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAAN  293 (335)
Q Consensus       215 ~~~~~~g~~~iQd~~s~l~~~~l~-~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~n  293 (335)
                      ...++.|.|.-|.....++...+. ..++.+|||+|||+|+.+..++..  + .+|+++|+|+.+++.+++|++..|+.+
T Consensus       126 ~~~~~tg~f~dq~~~~~~l~~~~~~~~~~~~VLDlgcGtG~~sl~la~~--g-a~V~~VD~s~~al~~a~~n~~~~gl~~  202 (332)
T 2igt_A          126 TAFRHVGVFPEQIVHWEWLKNAVETADRPLKVLNLFGYTGVASLVAAAA--G-AEVTHVDASKKAIGWAKENQVLAGLEQ  202 (332)
T ss_dssp             CSSSCCSCCGGGHHHHHHHHHHHHHSSSCCEEEEETCTTCHHHHHHHHT--T-CEEEEECSCHHHHHHHHHHHHHHTCTT
T ss_pred             CccccceechHHHHHHHHHHHHHHhcCCCCcEEEcccccCHHHHHHHHc--C-CEEEEEECCHHHHHHHHHHHHHcCCCc
Confidence            345677888888877766776664 457889999999999999999975  2 399999999999999999999999975


Q ss_pred             --EEEEeccCCCCCCC----CCCCceEEEEEEeccccccc
Q 019802          294 --IEVLHGDFLNLDPK----DPAYSEVSLIFCIFTWMIIM  327 (335)
Q Consensus       294 --i~~~~~D~~~~~~~----~~~fd~V~~IllD~~cs~~g  327 (335)
                        ++++++|+.++...    ...||.   |++||||.+.+
T Consensus       203 ~~v~~i~~D~~~~l~~~~~~~~~fD~---Ii~dPP~~~~~  239 (332)
T 2igt_A          203 APIRWICEDAMKFIQREERRGSTYDI---ILTDPPKFGRG  239 (332)
T ss_dssp             SCEEEECSCHHHHHHHHHHHTCCBSE---EEECCCSEEEC
T ss_pred             cceEEEECcHHHHHHHHHhcCCCceE---EEECCccccCC
Confidence              99999999876432    456875   99999987754

>3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ...

Probab=99.18  E-value=3.4e-11  Score=106.00  Aligned_cols=98  Identities=14%  Similarity=0.198  Sum_probs=81.2

Q ss_pred             EecCchHHHHHHHcCCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCC-cEEEEeccCC
Q 019802          224 FLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAA-NIEVLHGDFL  302 (335)
Q Consensus       224 ~iQd~~s~l~~~~l~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~-ni~~~~~D~~  302 (335)
                      .+++..++++..++...++.+|||+|||+|..+.++++.+++.++|+++|+++.+++.+++++++.|+. +|+++++|+.
T Consensus        41 ~~~~~~~~~l~~l~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~  120 (221)
T 3u81_A           41 NVGDAKGQIMDAVIREYSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEINPDCAAITQQMLNFAGLQDKVTILNGASQ  120 (221)
T ss_dssp             GCCHHHHHHHHHHHHHHCCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHH
T ss_pred             ccCHHHHHHHHHHHHhcCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHcCCCCceEEEECCHH
Confidence            456667777777777778899999999999999999998776789999999999999999999999986 4999999986


Q ss_pred             CC-CCCC-----CCCceEEEEEEecccc
Q 019802          303 NL-DPKD-----PAYSEVSLIFCIFTWM  324 (335)
Q Consensus       303 ~~-~~~~-----~~fd~V~~IllD~~cs  324 (335)
                      +. +...     .+||.   |++|..+.
T Consensus       121 ~~l~~~~~~~~~~~fD~---V~~d~~~~  145 (221)
T 3u81_A          121 DLIPQLKKKYDVDTLDM---VFLDHWKD  145 (221)
T ss_dssp             HHGGGTTTTSCCCCCSE---EEECSCGG
T ss_pred             HHHHHHHHhcCCCceEE---EEEcCCcc
Confidence            63 2211     46775   88887554

>3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12}

Probab=99.18  E-value=2.2e-11  Score=116.91  Aligned_cols=105  Identities=14%  Similarity=0.151  Sum_probs=87.6

Q ss_pred             CCCcccccceEEecCchHHHHHHHcCCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCC-
Q 019802          213 HVHPLIVNGCVFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGA-  291 (335)
Q Consensus       213 ~~~~~~~~g~~~iQd~~s~l~~~~l~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~-  291 (335)
                      ...++++.|.|..|....+++...   .+|.+|||+|||+|+++.+++..  +..+|+++|+++.+++.+++|++..|+ 
T Consensus       195 ~~~~~~~tgff~~~~~~~~~l~~~---~~~~~VLDl~cG~G~~sl~la~~--g~~~V~~vD~s~~al~~a~~n~~~ngl~  269 (396)
T 3c0k_A          195 DIQHGHKTGYYLDQRDSRLATRRY---VENKRVLNCFSYTGGFAVSALMG--GCSQVVSVDTSQEALDIARQNVELNKLD  269 (396)
T ss_dssp             CTTTSSTTSSCGGGHHHHHHHHHH---CTTCEEEEESCTTCSHHHHHHHT--TCSEEEEEESCHHHHHHHHHHHHHTTCC
T ss_pred             eccccccCCcCcCHHHHHHHHHHh---hCCCeEEEeeccCCHHHHHHHHC--CCCEEEEEECCHHHHHHHHHHHHHcCCC
Confidence            334577889998998888887766   57899999999999999999985  346999999999999999999999999 


Q ss_pred             C-cEEEEeccCCCCCCC----CCCCceEEEEEEeccccc
Q 019802          292 A-NIEVLHGDFLNLDPK----DPAYSEVSLIFCIFTWMI  325 (335)
Q Consensus       292 ~-ni~~~~~D~~~~~~~----~~~fd~V~~IllD~~cs~  325 (335)
                      . +++++++|+.++...    ...||   .|++|||+.+
T Consensus       270 ~~~v~~~~~D~~~~~~~~~~~~~~fD---~Ii~dpP~~~  305 (396)
T 3c0k_A          270 LSKAEFVRDDVFKLLRTYRDRGEKFD---VIVMDPPKFV  305 (396)
T ss_dssp             GGGEEEEESCHHHHHHHHHHTTCCEE---EEEECCSSTT
T ss_pred             ccceEEEECCHHHHHHHHHhcCCCCC---EEEECCCCCC
Confidence            6 899999999876431    33455   5999999854

>4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus}

Probab=99.18  E-value=3.6e-11  Score=115.33  Aligned_cols=101  Identities=19%  Similarity=0.197  Sum_probs=83.2

Q ss_pred             CcccccceEEecCchHHHHHHHcCCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcE
Q 019802          215 HPLIVNGCVFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANI  294 (335)
Q Consensus       215 ~~~~~~g~~~iQd~~s~l~~~~l~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni  294 (335)
                      ..+++.|.|..|....+++...+  ++|.+|||+|||+|+++.+++..  + ..|+++|+|+.+++.+++|++..|+.+ 
T Consensus       190 ~~~~~tG~f~dqr~~r~~l~~~~--~~g~~VLDlg~GtG~~sl~~a~~--g-a~V~avDis~~al~~a~~n~~~ng~~~-  263 (393)
T 4dmg_A          190 ALAQKTGYYLDQRENRRLFEAMV--RPGERVLDVYSYVGGFALRAARK--G-AYALAVDKDLEALGVLDQAALRLGLRV-  263 (393)
T ss_dssp             TTCCTTSSCGGGHHHHHHHHTTC--CTTCEEEEESCTTTHHHHHHHHT--T-CEEEEEESCHHHHHHHHHHHHHHTCCC-
T ss_pred             hhccccCcCCCHHHHHHHHHHHh--cCCCeEEEcccchhHHHHHHHHc--C-CeEEEEECCHHHHHHHHHHHHHhCCCC-
Confidence            46788999999999988887654  46999999999999999999985  2 349999999999999999999999864 


Q ss_pred             EEEeccCCCCCCC-CCCCceEEEEEEecccc
Q 019802          295 EVLHGDFLNLDPK-DPAYSEVSLIFCIFTWM  324 (335)
Q Consensus       295 ~~~~~D~~~~~~~-~~~fd~V~~IllD~~cs  324 (335)
                      .+.++|+.++... ...||   .|++||||-
T Consensus       264 ~~~~~D~~~~l~~~~~~fD---~Ii~dpP~f  291 (393)
T 4dmg_A          264 DIRHGEALPTLRGLEGPFH---HVLLDPPTL  291 (393)
T ss_dssp             EEEESCHHHHHHTCCCCEE---EEEECCCCC
T ss_pred             cEEEccHHHHHHHhcCCCC---EEEECCCcC
Confidence            5679999875322 22255   699999993

>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405}

Probab=99.17  E-value=1.1e-10  Score=100.39  Aligned_cols=83  Identities=18%  Similarity=0.296  Sum_probs=72.0

Q ss_pred             CCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCC-CcEEEEeccCCCCC-CCCCCCceEE
Q 019802          238 APKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGA-ANIEVLHGDFLNLD-PKDPAYSEVS  315 (335)
Q Consensus       238 ~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~-~ni~~~~~D~~~~~-~~~~~fd~V~  315 (335)
                      .++++++|||+|||+|..+..++..+++.++|+++|+++.+++.++++++..|+ .+++++++|+.+++ ..+.+||   
T Consensus        19 ~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD---   95 (197)
T 3eey_A           19 FVKEGDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLNLIDRVTLIKDGHQNMDKYIDCPVK---   95 (197)
T ss_dssp             HCCTTCEEEESCCTTSHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHHHHTTCGGGEEEECSCGGGGGGTCCSCEE---
T ss_pred             cCCCCCEEEEcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHhhhccCCce---
Confidence            457899999999999999999999987678999999999999999999999998 68999999998876 3344555   


Q ss_pred             EEEEeccc
Q 019802          316 LIFCIFTW  323 (335)
Q Consensus       316 ~IllD~~c  323 (335)
                      .|++|++.
T Consensus        96 ~v~~~~~~  103 (197)
T 3eey_A           96 AVMFNLGY  103 (197)
T ss_dssp             EEEEEESB
T ss_pred             EEEEcCCc
Confidence            58888765

>1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41

Probab=99.17  E-value=1.4e-10  Score=104.19  Aligned_cols=99  Identities=21%  Similarity=0.305  Sum_probs=76.8

Q ss_pred             CCcccccceEEecCchHHHHHHHcCCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCc
Q 019802          214 VHPLIVNGCVFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAAN  293 (335)
Q Consensus       214 ~~~~~~~g~~~iQd~~s~l~~~~l~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~n  293 (335)
                      .+++|.......|......+...+.+.++.+|||+|||+|..+..+++..   ++|+++|+|+.+++.++++++..|+.+
T Consensus        10 ~~~~~~~s~~~~~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~---~~v~gvD~s~~~l~~a~~~~~~~~~~~   86 (260)
T 1vl5_A           10 HHHMYVTSQIHAKGSDLAKLMQIAALKGNEEVLDVATGGGHVANAFAPFV---KKVVAFDLTEDILKVARAFIEGNGHQQ   86 (260)
T ss_dssp             -------------CCCHHHHHHHHTCCSCCEEEEETCTTCHHHHHHGGGS---SEEEEEESCHHHHHHHHHHHHHTTCCS
T ss_pred             cceeeecCccccCHHHHHHHHHHhCCCCCCEEEEEeCCCCHHHHHHHHhC---CEEEEEeCCHHHHHHHHHHHHhcCCCc
Confidence            45678887888888888888888888999999999999999999998773   499999999999999999999999989


Q ss_pred             EEEEeccCCCCCCCCCCCceEE
Q 019802          294 IEVLHGDFLNLDPKDPAYSEVS  315 (335)
Q Consensus       294 i~~~~~D~~~~~~~~~~fd~V~  315 (335)
                      +.++++|+.+++..+++||.|.
T Consensus        87 v~~~~~d~~~l~~~~~~fD~V~  108 (260)
T 1vl5_A           87 VEYVQGDAEQMPFTDERFHIVT  108 (260)
T ss_dssp             EEEEECCC-CCCSCTTCEEEEE
T ss_pred             eEEEEecHHhCCCCCCCEEEEE
Confidence            9999999999888777888643

>1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A*

Probab=99.17  E-value=5.6e-11  Score=109.13  Aligned_cols=85  Identities=15%  Similarity=0.203  Sum_probs=72.8

Q ss_pred             CCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCc-EEEEeccCCCCCCCCCCCceEEEEE
Q 019802          240 KPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAAN-IEVLHGDFLNLDPKDPAYSEVSLIF  318 (335)
Q Consensus       240 ~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~n-i~~~~~D~~~~~~~~~~fd~V~~Il  318 (335)
                      .++.+|||+|||+|..+..++..  +..+|+++|+|+.+++.+++|+++.|+.+ ++++++|+.+...  ..|..+|.|+
T Consensus       122 ~~~~~vLDlG~GsG~~~~~la~~--~~~~v~~vDis~~al~~A~~n~~~~~l~~~v~~~~~D~~~~~~--~~f~~~D~Iv  197 (284)
T 1nv8_A          122 YGIKTVADIGTGSGAIGVSVAKF--SDAIVFATDVSSKAVEIARKNAERHGVSDRFFVRKGEFLEPFK--EKFASIEMIL  197 (284)
T ss_dssp             HTCCEEEEESCTTSHHHHHHHHH--SSCEEEEEESCHHHHHHHHHHHHHTTCTTSEEEEESSTTGGGG--GGTTTCCEEE
T ss_pred             cCCCEEEEEeCchhHHHHHHHHC--CCCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcchhhcc--cccCCCCEEE
Confidence            46789999999999999999988  56899999999999999999999999976 9999999987432  3573334699


Q ss_pred             Eecccccccc
Q 019802          319 CIFTWMIIMF  328 (335)
Q Consensus       319 lD~~cs~~g~  328 (335)
                      +||||.+.+.
T Consensus       198 snPPyi~~~~  207 (284)
T 1nv8_A          198 SNPPYVKSSA  207 (284)
T ss_dssp             ECCCCBCGGG
T ss_pred             EcCCCCCccc
Confidence            9999998764

>3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp}

Probab=99.16  E-value=4.4e-11  Score=107.50  Aligned_cols=97  Identities=15%  Similarity=0.280  Sum_probs=80.1

Q ss_pred             ecCchHHHHHHHcCCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCC-cEEEEeccCCC
Q 019802          225 LQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAA-NIEVLHGDFLN  303 (335)
Q Consensus       225 iQd~~s~l~~~~l~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~-ni~~~~~D~~~  303 (335)
                      ++...++++..++...++.+|||+|||+|..+.++++.+++.++|+++|+++.+++.+++++++.|+. +|+++++|+.+
T Consensus        47 ~~~~~~~~l~~l~~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~  126 (248)
T 3tfw_A           47 VAANQGQFLALLVRLTQAKRILEIGTLGGYSTIWMARELPADGQLLTLEADAHHAQVARENLQLAGVDQRVTLREGPALQ  126 (248)
T ss_dssp             CCHHHHHHHHHHHHHHTCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCHHH
T ss_pred             cCHHHHHHHHHHHhhcCCCEEEEecCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHH
Confidence            34556667766666778899999999999999999998876799999999999999999999999996 69999999977


Q ss_pred             C-CCC--CCCCceEEEEEEecccc
Q 019802          304 L-DPK--DPAYSEVSLIFCIFTWM  324 (335)
Q Consensus       304 ~-~~~--~~~fd~V~~IllD~~cs  324 (335)
                      . +..  ..+||.   |++|.++.
T Consensus       127 ~l~~~~~~~~fD~---V~~d~~~~  147 (248)
T 3tfw_A          127 SLESLGECPAFDL---IFIDADKP  147 (248)
T ss_dssp             HHHTCCSCCCCSE---EEECSCGG
T ss_pred             HHHhcCCCCCeEE---EEECCchH
Confidence            3 322  236885   78887654

>2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A*

Probab=99.16  E-value=1.1e-10  Score=106.32  Aligned_cols=98  Identities=17%  Similarity=0.230  Sum_probs=78.2

Q ss_pred             ecCchHHHHHHHcCC--CCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCC
Q 019802          225 LQGKASSMVAAALAP--KPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFL  302 (335)
Q Consensus       225 iQd~~s~l~~~~l~~--~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~  302 (335)
                      .+.....++..+++.  .++.+|||+|||+|..+..++... +..+|+++|+|+.+++.+++|+++.|+.++.++++|+.
T Consensus        91 pr~~te~l~~~~l~~~~~~~~~vLDlG~GsG~~~~~la~~~-~~~~v~~vD~s~~~l~~a~~n~~~~~~~~v~~~~~d~~  169 (276)
T 2b3t_A           91 PRPDTECLVEQALARLPEQPCRILDLGTGTGAIALALASER-PDCEIIAVDRMPDAVSLAQRNAQHLAIKNIHILQSDWF  169 (276)
T ss_dssp             CCTTHHHHHHHHHHHSCSSCCEEEEETCTTSHHHHHHHHHC-TTSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCSTT
T ss_pred             cCchHHHHHHHHHHhcccCCCEEEEecCCccHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEcchh
Confidence            334444444444332  578899999999999999999876 45799999999999999999999999989999999998


Q ss_pred             CCCCCCCCCceEEEEEEeccccccc
Q 019802          303 NLDPKDPAYSEVSLIFCIFTWMIIM  327 (335)
Q Consensus       303 ~~~~~~~~fd~V~~IllD~~cs~~g  327 (335)
                      +..+ ...||   .|+++|||.+.+
T Consensus       170 ~~~~-~~~fD---~Iv~npPy~~~~  190 (276)
T 2b3t_A          170 SALA-GQQFA---MIVSNPPYIDEQ  190 (276)
T ss_dssp             GGGT-TCCEE---EEEECCCCBCTT
T ss_pred             hhcc-cCCcc---EEEECCCCCCcc
Confidence            7532 34455   589999998764

>1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A*

Probab=99.16  E-value=1.6e-11  Score=117.43  Aligned_cols=101  Identities=22%  Similarity=0.266  Sum_probs=84.6

Q ss_pred             CcccccceEEecCchHHHHHHHcCCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcE
Q 019802          215 HPLIVNGCVFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANI  294 (335)
Q Consensus       215 ~~~~~~g~~~iQd~~s~l~~~~l~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni  294 (335)
                      ..++..|+|..|....++++.+    +|++|||+|||+|+.+.+++..   ..+|+++|+++.+++.+++|++..|+.|+
T Consensus       187 ~~~~~~g~f~~~~~~~~~~~~~----~~~~VLDlg~G~G~~~~~la~~---~~~v~~vD~s~~~~~~a~~n~~~n~~~~~  259 (382)
T 1wxx_A          187 RAGQKTGAYLDQRENRLYMERF----RGERALDVFSYAGGFALHLALG---FREVVAVDSSAEALRRAEENARLNGLGNV  259 (382)
T ss_dssp             STTSCCCCCGGGHHHHHHGGGC----CEEEEEEETCTTTHHHHHHHHH---EEEEEEEESCHHHHHHHHHHHHHTTCTTE
T ss_pred             hhcccCccccchHHHHHHHHhc----CCCeEEEeeeccCHHHHHHHHh---CCEEEEEECCHHHHHHHHHHHHHcCCCCc
Confidence            3467788888888776665543    7889999999999999999987   47999999999999999999999999899


Q ss_pred             EEEeccCCCCCCC----CCCCceEEEEEEeccccc
Q 019802          295 EVLHGDFLNLDPK----DPAYSEVSLIFCIFTWMI  325 (335)
Q Consensus       295 ~~~~~D~~~~~~~----~~~fd~V~~IllD~~cs~  325 (335)
                      +++++|+.++.+.    ...||   .|++|||+.+
T Consensus       260 ~~~~~d~~~~~~~~~~~~~~fD---~Ii~dpP~~~  291 (382)
T 1wxx_A          260 RVLEANAFDLLRRLEKEGERFD---LVVLDPPAFA  291 (382)
T ss_dssp             EEEESCHHHHHHHHHHTTCCEE---EEEECCCCSC
T ss_pred             eEEECCHHHHHHHHHhcCCCee---EEEECCCCCC
Confidence            9999999876432    34565   5899999865

>3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii}

Probab=99.15  E-value=1.7e-10  Score=105.12  Aligned_cols=83  Identities=20%  Similarity=0.159  Sum_probs=72.3

Q ss_pred             HcCCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCceEE
Q 019802          236 ALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVS  315 (335)
Q Consensus       236 ~l~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~~~~~~fd~V~  315 (335)
                      +..+.+|++|||+|||+|..+..++...+ .++|+++|+++.+++.+++|++..|+.|+.++++|+.++ +....||   
T Consensus       114 ~~~~~~~~~VLDlgcG~G~~s~~la~~~~-~~~V~~vD~s~~av~~a~~n~~~n~l~~~~~~~~d~~~~-~~~~~~D---  188 (272)
T 3a27_A          114 AFISNENEVVVDMFAGIGYFTIPLAKYSK-PKLVYAIEKNPTAYHYLCENIKLNKLNNVIPILADNRDV-ELKDVAD---  188 (272)
T ss_dssp             HTSCCTTCEEEETTCTTTTTHHHHHHHTC-CSEEEEEECCHHHHHHHHHHHHHTTCSSEEEEESCGGGC-CCTTCEE---
T ss_pred             HHhcCCCCEEEEecCcCCHHHHHHHHhCC-CCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEECChHHc-CccCCce---
Confidence            44567899999999999999999998854 579999999999999999999999999999999999988 4344455   


Q ss_pred             EEEEeccc
Q 019802          316 LIFCIFTW  323 (335)
Q Consensus       316 ~IllD~~c  323 (335)
                      .|++|+|.
T Consensus       189 ~Vi~d~p~  196 (272)
T 3a27_A          189 RVIMGYVH  196 (272)
T ss_dssp             EEEECCCS
T ss_pred             EEEECCcc
Confidence            58999986

>2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum}

Probab=99.15  E-value=1.3e-10  Score=107.41  Aligned_cols=96  Identities=20%  Similarity=0.231  Sum_probs=78.8

Q ss_pred             EEecCchHHHHHHHcCCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCC
Q 019802          223 VFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFL  302 (335)
Q Consensus       223 ~~iQd~~s~l~~~~l~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~  302 (335)
                      |.++......+...+++.++++|||+|||+|..|..+++.   .++|+++|+++.+++.++++++..|..+++++++|+.
T Consensus        24 fl~~~~i~~~i~~~~~~~~~~~VLDiG~G~G~lt~~La~~---~~~v~~vDi~~~~~~~a~~~~~~~~~~~v~~~~~D~~  100 (299)
T 2h1r_A           24 LLKNPGILDKIIYAAKIKSSDIVLEIGCGTGNLTVKLLPL---AKKVITIDIDSRMISEVKKRCLYEGYNNLEVYEGDAI  100 (299)
T ss_dssp             EECCHHHHHHHHHHHCCCTTCEEEEECCTTSTTHHHHTTT---SSEEEEECSCHHHHHHHHHHHHHTTCCCEEC----CC
T ss_pred             eecCHHHHHHHHHhcCCCCcCEEEEEcCcCcHHHHHHHhc---CCEEEEEECCHHHHHHHHHHHHHcCCCceEEEECchh
Confidence            5556666777778888999999999999999999999875   4699999999999999999999888889999999999


Q ss_pred             CCCCCCCCCceEEEEEEecccccc
Q 019802          303 NLDPKDPAYSEVSLIFCIFTWMII  326 (335)
Q Consensus       303 ~~~~~~~~fd~V~~IllD~~cs~~  326 (335)
                      +++..  .||.   |++|+|+..+
T Consensus       101 ~~~~~--~~D~---Vv~n~py~~~  119 (299)
T 2h1r_A          101 KTVFP--KFDV---CTANIPYKIS  119 (299)
T ss_dssp             SSCCC--CCSE---EEEECCGGGH
T ss_pred             hCCcc--cCCE---EEEcCCcccc
Confidence            87653  5774   8889998754

>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*

Probab=99.15  E-value=4.5e-11  Score=122.71  Aligned_cols=104  Identities=17%  Similarity=0.236  Sum_probs=87.1

Q ss_pred             CcccccceEEecCchHHHHHHHcCCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCC--
Q 019802          215 HPLIVNGCVFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAA--  292 (335)
Q Consensus       215 ~~~~~~g~~~iQd~~s~l~~~~l~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~--  292 (335)
                      .++++.|.|.-|....+++....   +|.+|||+|||+|+.+.+++..  +..+|+++|+|+.+++.+++|++..|+.  
T Consensus       516 ~~~~~tG~f~d~r~~r~~l~~~~---~g~~VLDlg~GtG~~sl~aa~~--ga~~V~aVD~s~~al~~a~~N~~~ngl~~~  590 (703)
T 3v97_A          516 TDYLDTGLFLDHRIARRMLGQMS---KGKDFLNLFSYTGSATVHAGLG--GARSTTTVDMSRTYLEWAERNLRLNGLTGR  590 (703)
T ss_dssp             SSSSSCSCCGGGHHHHHHHHHHC---TTCEEEEESCTTCHHHHHHHHT--TCSEEEEEESCHHHHHHHHHHHHHTTCCST
T ss_pred             cccccCCCcccHHHHHHHHHHhc---CCCcEEEeeechhHHHHHHHHC--CCCEEEEEeCCHHHHHHHHHHHHHcCCCcc
Confidence            45778899999999888887654   6899999999999999999874  4568999999999999999999999987  


Q ss_pred             cEEEEeccCCCC-CCCCCCCceEEEEEEecccccc
Q 019802          293 NIEVLHGDFLNL-DPKDPAYSEVSLIFCIFTWMII  326 (335)
Q Consensus       293 ni~~~~~D~~~~-~~~~~~fd~V~~IllD~~cs~~  326 (335)
                      +++++++|+.++ +.....||   .|++||||.+.
T Consensus       591 ~v~~i~~D~~~~l~~~~~~fD---~Ii~DPP~f~~  622 (703)
T 3v97_A          591 AHRLIQADCLAWLREANEQFD---LIFIDPPTFSN  622 (703)
T ss_dssp             TEEEEESCHHHHHHHCCCCEE---EEEECCCSBC-
T ss_pred             ceEEEecCHHHHHHhcCCCcc---EEEECCccccC
Confidence            799999999874 33344566   59999999653

>1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1

Probab=99.14  E-value=2.7e-10  Score=106.00  Aligned_cols=97  Identities=19%  Similarity=0.244  Sum_probs=80.7

Q ss_pred             ecCchHHHHHHHcCCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCC
Q 019802          225 LQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNL  304 (335)
Q Consensus       225 iQd~~s~l~~~~l~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~  304 (335)
                      .|......+...+.+++|++|||+|||+|..+..+++.....++|+++|+++.+++.++++++..|+.++.+.++|+.+.
T Consensus        59 ~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~g~~~v~~~~~d~~~~  138 (317)
T 1dl5_A           59 SQPSLMALFMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIENVIFVCGDGYYG  138 (317)
T ss_dssp             CCHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGC
T ss_pred             cCHHHHHHHHHhcCCCCcCEEEEecCCchHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCCeEEEECChhhc
Confidence            34444556667788899999999999999999999998654589999999999999999999999999999999999886


Q ss_pred             CCCCCCCceEEEEEEecccc
Q 019802          305 DPKDPAYSEVSLIFCIFTWM  324 (335)
Q Consensus       305 ~~~~~~fd~V~~IllD~~cs  324 (335)
                      .+.+..||   .|+++.+..
T Consensus       139 ~~~~~~fD---~Iv~~~~~~  155 (317)
T 1dl5_A          139 VPEFSPYD---VIFVTVGVD  155 (317)
T ss_dssp             CGGGCCEE---EEEECSBBS
T ss_pred             cccCCCeE---EEEEcCCHH
Confidence            55445566   477776654

>3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A*

Probab=99.13  E-value=4.6e-11  Score=104.96  Aligned_cols=97  Identities=15%  Similarity=0.185  Sum_probs=79.9

Q ss_pred             ecCchHHHHHHHcCCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCc-EEEEeccCCC
Q 019802          225 LQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAAN-IEVLHGDFLN  303 (335)
Q Consensus       225 iQd~~s~l~~~~l~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~n-i~~~~~D~~~  303 (335)
                      ++...++++..++...++.+|||+|||+|..+.++++.+++.++|+++|+++.+++.+++++++.|+.+ ++++++|+.+
T Consensus        42 ~~~~~~~~l~~l~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~  121 (223)
T 3duw_A           42 VSPTQGKFLQLLVQIQGARNILEIGTLGGYSTIWLARGLSSGGRVVTLEASEKHADIARSNIERANLNDRVEVRTGLALD  121 (223)
T ss_dssp             CCHHHHHHHHHHHHHHTCSEEEEECCTTSHHHHHHHTTCCSSCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHH
T ss_pred             cCHHHHHHHHHHHHhhCCCEEEEecCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHH
Confidence            345566666666666788999999999999999999988767899999999999999999999999975 9999999976


Q ss_pred             CCCC-----CCCCceEEEEEEecccc
Q 019802          304 LDPK-----DPAYSEVSLIFCIFTWM  324 (335)
Q Consensus       304 ~~~~-----~~~fd~V~~IllD~~cs  324 (335)
                      ..+.     ...||.   |++|++++
T Consensus       122 ~~~~~~~~~~~~fD~---v~~d~~~~  144 (223)
T 3duw_A          122 SLQQIENEKYEPFDF---IFIDADKQ  144 (223)
T ss_dssp             HHHHHHHTTCCCCSE---EEECSCGG
T ss_pred             HHHHHHhcCCCCcCE---EEEcCCcH
Confidence            4321     145875   78888765

>1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A*

Probab=99.13  E-value=2.7e-10  Score=101.33  Aligned_cols=87  Identities=14%  Similarity=0.232  Sum_probs=78.4

Q ss_pred             ecCchHHHHHHHcCCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCC
Q 019802          225 LQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNL  304 (335)
Q Consensus       225 iQd~~s~l~~~~l~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~  304 (335)
                      -|++++......+++.++.+|||+|||+|..+..+++..   .+|+++|+++.+++.++++++..|+.++.++++|+..+
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~   81 (239)
T 1xxl_A            5 HHHHSLGLMIKTAECRAEHRVLDIGAGAGHTALAFSPYV---QECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAESL   81 (239)
T ss_dssp             -CHHHHHHHHHHHTCCTTCEEEEESCTTSHHHHHHGGGS---SEEEEEESCHHHHHHHHHHHHHHTCCSEEEEECBTTBC
T ss_pred             ccCCCcchHHHHhCcCCCCEEEEEccCcCHHHHHHHHhC---CEEEEEECCHHHHHHHHHHHHHcCCCCeEEEecccccC
Confidence            367888888999999999999999999999999998763   48999999999999999999999998999999999998


Q ss_pred             CCCCCCCceE
Q 019802          305 DPKDPAYSEV  314 (335)
Q Consensus       305 ~~~~~~fd~V  314 (335)
                      +..+++||.|
T Consensus        82 ~~~~~~fD~v   91 (239)
T 1xxl_A           82 PFPDDSFDII   91 (239)
T ss_dssp             CSCTTCEEEE
T ss_pred             CCCCCcEEEE
Confidence            8777788864

>2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus}

Probab=99.13  E-value=3.7e-10  Score=101.09  Aligned_cols=93  Identities=19%  Similarity=0.266  Sum_probs=79.1

Q ss_pred             hHHHHHHHcCCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHh-CCCcEEEEeccCCCCCCC
Q 019802          229 ASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLS-GAANIEVLHGDFLNLDPK  307 (335)
Q Consensus       229 ~s~l~~~~l~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~-g~~ni~~~~~D~~~~~~~  307 (335)
                      .+..+...+++.++.+|||+|||+|..+..++..+++.++|+++|+++.+++.++++++.. |..++++.++|+.+.+..
T Consensus        84 ~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~g~~~v~~~~~d~~~~~~~  163 (258)
T 2pwy_A           84 DASAMVTLLDLAPGMRVLEAGTGSGGLTLFLARAVGEKGLVESYEARPHHLAQAERNVRAFWQVENVRFHLGKLEEAELE  163 (258)
T ss_dssp             HHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCCCCEEEEESCGGGCCCC
T ss_pred             HHHHHHHHcCCCCCCEEEEECCCcCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCEEEEECchhhcCCC
Confidence            3345666788899999999999999999999998776789999999999999999999998 877899999999887554


Q ss_pred             CCCCceEEEEEEecccc
Q 019802          308 DPAYSEVSLIFCIFTWM  324 (335)
Q Consensus       308 ~~~fd~V~~IllD~~cs  324 (335)
                      +..||   .|++|++..
T Consensus       164 ~~~~D---~v~~~~~~~  177 (258)
T 2pwy_A          164 EAAYD---GVALDLMEP  177 (258)
T ss_dssp             TTCEE---EEEEESSCG
T ss_pred             CCCcC---EEEECCcCH
Confidence            45565   578887754

>3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A*

Probab=99.12  E-value=1.8e-10  Score=105.36  Aligned_cols=83  Identities=19%  Similarity=0.239  Sum_probs=71.8

Q ss_pred             CCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCc-EEEEeccCCCCCCCCCCCceEEEE
Q 019802          239 PKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAAN-IEVLHGDFLNLDPKDPAYSEVSLI  317 (335)
Q Consensus       239 ~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~n-i~~~~~D~~~~~~~~~~fd~V~~I  317 (335)
                      .++|++|||+|||+|+.++++|..  +..+|+|+|+++..++.+++|++..|+.+ |+++++|+.++... ..||.   |
T Consensus       123 ~~~g~~VlD~~aG~G~~~i~~a~~--g~~~V~avD~np~a~~~~~~N~~~N~v~~~v~~~~~D~~~~~~~-~~~D~---V  196 (278)
T 3k6r_A          123 AKPDELVVDMFAGIGHLSLPIAVY--GKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPGE-NIADR---I  196 (278)
T ss_dssp             CCTTCEEEETTCTTTTTTHHHHHH--TCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCCC-SCEEE---E
T ss_pred             cCCCCEEEEecCcCcHHHHHHHHh--cCCeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCcHHHhccc-cCCCE---E
Confidence            478999999999999999999987  34689999999999999999999999976 99999999988654 44664   8


Q ss_pred             EEeccccccc
Q 019802          318 FCIFTWMIIM  327 (335)
Q Consensus       318 llD~~cs~~g  327 (335)
                      ++|+|.+...
T Consensus       197 i~~~p~~~~~  206 (278)
T 3k6r_A          197 LMGYVVRTHE  206 (278)
T ss_dssp             EECCCSSGGG
T ss_pred             EECCCCcHHH
Confidence            8998887643

>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A*

Probab=99.11  E-value=2e-10  Score=97.75  Aligned_cols=78  Identities=22%  Similarity=0.237  Sum_probs=66.3

Q ss_pred             CCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCC-CCCCCCceEEEE
Q 019802          239 PKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLD-PKDPAYSEVSLI  317 (335)
Q Consensus       239 ~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~-~~~~~fd~V~~I  317 (335)
                      +++|++|||+|||+|..+..++..   .++|+++|+|+.+++.++++++..|+.++++++.|+..++ ..+.+||.   |
T Consensus        20 ~~~~~~vLDiGcG~G~~~~~la~~---~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~~~~~l~~~~~~~fD~---v   93 (185)
T 3mti_A           20 LDDESIVVDATMGNGNDTAFLAGL---SKKVYAFDVQEQALGKTSQRLSDLGIENTELILDGHENLDHYVREPIRA---A   93 (185)
T ss_dssp             CCTTCEEEESCCTTSHHHHHHHTT---SSEEEEEESCHHHHHHHHHHHHHHTCCCEEEEESCGGGGGGTCCSCEEE---E
T ss_pred             CCCCCEEEEEcCCCCHHHHHHHHh---CCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCcHHHHHhhccCCcCE---E
Confidence            568999999999999999999976   5799999999999999999999999989999998887754 23455765   5


Q ss_pred             EEecc
Q 019802          318 FCIFT  322 (335)
Q Consensus       318 llD~~  322 (335)
                      +++++
T Consensus        94 ~~~~~   98 (185)
T 3mti_A           94 IFNLG   98 (185)
T ss_dssp             EEEEC
T ss_pred             EEeCC
Confidence            66643

>2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans}

Probab=99.11  E-value=1e-10  Score=103.68  Aligned_cols=101  Identities=20%  Similarity=0.259  Sum_probs=84.8

Q ss_pred             cceEEecCchHHHHHHHcCCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCC-cEEEEe
Q 019802          220 NGCVFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAA-NIEVLH  298 (335)
Q Consensus       220 ~g~~~iQd~~s~l~~~~l~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~-ni~~~~  298 (335)
                      .|...+|...+.++..++...++.+|||+|||+|..+..+++.++ .++|+++|+++.+++.+++++++.|+. +|.+++
T Consensus        33 ~~~~~~~~~~~~~l~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~  111 (233)
T 2gpy_A           33 QQVPIMDLLGMESLLHLLKMAAPARILEIGTAIGYSAIRMAQALP-EATIVSIERDERRYEEAHKHVKALGLESRIELLF  111 (233)
T ss_dssp             TTCCCCCHHHHHHHHHHHHHHCCSEEEEECCTTSHHHHHHHHHCT-TCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEEC
T ss_pred             cCCCCcCHHHHHHHHHHHhccCCCEEEEecCCCcHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEE
Confidence            455567888888888888888899999999999999999999875 589999999999999999999999985 599999


Q ss_pred             ccCCCCCC-C--CCCCceEEEEEEecccc
Q 019802          299 GDFLNLDP-K--DPAYSEVSLIFCIFTWM  324 (335)
Q Consensus       299 ~D~~~~~~-~--~~~fd~V~~IllD~~cs  324 (335)
                      +|+.+..+ .  +..||   .|++|++++
T Consensus       112 ~d~~~~~~~~~~~~~fD---~I~~~~~~~  137 (233)
T 2gpy_A          112 GDALQLGEKLELYPLFD---VLFIDAAKG  137 (233)
T ss_dssp             SCGGGSHHHHTTSCCEE---EEEEEGGGS
T ss_pred             CCHHHHHHhcccCCCcc---EEEECCCHH
Confidence            99987522 1  34565   588888874

>1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13

Probab=99.11  E-value=4.2e-10  Score=102.25  Aligned_cols=94  Identities=16%  Similarity=0.208  Sum_probs=79.1

Q ss_pred             CchHHHHHHHcCCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHh-C--CCcEEEEeccCCC
Q 019802          227 GKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLS-G--AANIEVLHGDFLN  303 (335)
Q Consensus       227 d~~s~l~~~~l~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~-g--~~ni~~~~~D~~~  303 (335)
                      ......+...+++.++.+|||+|||+|..+.+++..+++.++|+++|+++.+++.++++++.. |  ..++.++++|+.+
T Consensus        85 ~~~~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~g~~~~~v~~~~~d~~~  164 (280)
T 1i9g_A           85 PKDAAQIVHEGDIFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLAD  164 (280)
T ss_dssp             HHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGG
T ss_pred             HHHHHHHHHHcCCCCCCEEEEEcccccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCCcEEEEECchHh
Confidence            334455666788899999999999999999999998776789999999999999999999998 7  6789999999988


Q ss_pred             CCCCCCCCceEEEEEEeccc
Q 019802          304 LDPKDPAYSEVSLIFCIFTW  323 (335)
Q Consensus       304 ~~~~~~~fd~V~~IllD~~c  323 (335)
                      .+..+..||   .|++|++.
T Consensus       165 ~~~~~~~~D---~v~~~~~~  181 (280)
T 1i9g_A          165 SELPDGSVD---RAVLDMLA  181 (280)
T ss_dssp             CCCCTTCEE---EEEEESSC
T ss_pred             cCCCCCcee---EEEECCcC
Confidence            765555565   47777663

>3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus}

Probab=99.10  E-value=8.2e-10  Score=97.28  Aligned_cols=83  Identities=12%  Similarity=0.165  Sum_probs=69.2

Q ss_pred             CCCCCCEEEEEcCC-CchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCC-CCCCCceEE
Q 019802          238 APKPGWKVLDACSA-PGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDP-KDPAYSEVS  315 (335)
Q Consensus       238 ~~~~g~~VLD~cag-pG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~~-~~~~fd~V~  315 (335)
                      ..+++.+|||+||| +|..+..++...  .++|+++|+++.+++.+++|++..|+ +++++++|+..+.. .+.+||   
T Consensus        52 ~~~~~~~vLDlG~G~~G~~~~~la~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~-~v~~~~~d~~~~~~~~~~~fD---  125 (230)
T 3evz_A           52 FLRGGEVALEIGTGHTAMMALMAEKFF--NCKVTATEVDEEFFEYARRNIERNNS-NVRLVKSNGGIIKGVVEGTFD---  125 (230)
T ss_dssp             TCCSSCEEEEECCTTTCHHHHHHHHHH--CCEEEEEECCHHHHHHHHHHHHHTTC-CCEEEECSSCSSTTTCCSCEE---
T ss_pred             hcCCCCEEEEcCCCHHHHHHHHHHHhc--CCEEEEEECCHHHHHHHHHHHHHhCC-CcEEEeCCchhhhhcccCcee---
Confidence            45789999999999 999999999885  47999999999999999999999999 89999999765432 234455   


Q ss_pred             EEEEecccccc
Q 019802          316 LIFCIFTWMII  326 (335)
Q Consensus       316 ~IllD~~cs~~  326 (335)
                      .|++|+|+...
T Consensus       126 ~I~~npp~~~~  136 (230)
T 3evz_A          126 VIFSAPPYYDK  136 (230)
T ss_dssp             EEEECCCCC--
T ss_pred             EEEECCCCcCC
Confidence            58899997543

>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum}

Probab=99.10  E-value=9.2e-11  Score=103.72  Aligned_cols=85  Identities=12%  Similarity=0.150  Sum_probs=71.4

Q ss_pred             HcCCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCC--cEEEEeccCCCCCCC--CCCC
Q 019802          236 ALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAA--NIEVLHGDFLNLDPK--DPAY  311 (335)
Q Consensus       236 ~l~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~--ni~~~~~D~~~~~~~--~~~f  311 (335)
                      ...++++.+|||+|||+|..+..+++.++++++|+++|+++.+++.+++++++.|+.  +|+++++|+.++.+.  +.+|
T Consensus        51 ~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~~i~~~~gda~~~l~~~~~~~f  130 (221)
T 3dr5_A           51 TTNGNGSTGAIAITPAAGLVGLYILNGLADNTTLTCIDPESEHQRQAKALFREAGYSPSRVRFLLSRPLDVMSRLANDSY  130 (221)
T ss_dssp             HSCCTTCCEEEEESTTHHHHHHHHHHHSCTTSEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHGGGSCTTCE
T ss_pred             hhCCCCCCCEEEEcCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCcCcEEEEEcCHHHHHHHhcCCCc
Confidence            344555669999999999999999998877799999999999999999999999987  799999999775432  4567


Q ss_pred             ceEEEEEEeccc
Q 019802          312 SEVSLIFCIFTW  323 (335)
Q Consensus       312 d~V~~IllD~~c  323 (335)
                      |.   |++|+..
T Consensus       131 D~---V~~d~~~  139 (221)
T 3dr5_A          131 QL---VFGQVSP  139 (221)
T ss_dssp             EE---EEECCCT
T ss_pred             Ce---EEEcCcH
Confidence            64   7888654

>2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A*

Probab=99.10  E-value=3.3e-10  Score=103.56  Aligned_cols=90  Identities=19%  Similarity=0.209  Sum_probs=74.6

Q ss_pred             chHHHHHHHcCCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCc-EEEEeccCCCCCC
Q 019802          228 KASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAAN-IEVLHGDFLNLDP  306 (335)
Q Consensus       228 ~~s~l~~~~l~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~n-i~~~~~D~~~~~~  306 (335)
                      .....+...  .++|++|||+|||+|+.+..++....  .+|+++|+|+.+++.+++|++..|+.+ ++++++|+.++.+
T Consensus       114 ~~~~~l~~~--~~~~~~VLDlgcG~G~~~~~la~~~~--~~V~~vD~s~~~~~~a~~n~~~n~~~~~v~~~~~D~~~~~~  189 (278)
T 2frn_A          114 KERVRMAKV--AKPDELVVDMFAGIGHLSLPIAVYGK--AKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPG  189 (278)
T ss_dssp             HHHHHHHHH--CCTTCEEEETTCTTTTTHHHHHHHTC--CEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCC
T ss_pred             HHHHHHHHh--CCCCCEEEEecccCCHHHHHHHHhCC--CEEEEEECCHHHHHHHHHHHHHcCCCceEEEEECCHHHhcc
Confidence            444444444  46799999999999999999998732  289999999999999999999999976 9999999999876


Q ss_pred             CCCCCceEEEEEEeccccc
Q 019802          307 KDPAYSEVSLIFCIFTWMI  325 (335)
Q Consensus       307 ~~~~fd~V~~IllD~~cs~  325 (335)
                       +..||   .|++|+|.+.
T Consensus       190 -~~~fD---~Vi~~~p~~~  204 (278)
T 2frn_A          190 -ENIAD---RILMGYVVRT  204 (278)
T ss_dssp             -CSCEE---EEEECCCSSG
T ss_pred             -cCCcc---EEEECCchhH
Confidence             45566   5888999664

>2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51

Probab=99.10  E-value=5.9e-11  Score=113.94  Aligned_cols=103  Identities=17%  Similarity=0.261  Sum_probs=84.7

Q ss_pred             cccccceEEecCchHHHHHHHcCCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCC-cE
Q 019802          216 PLIVNGCVFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAA-NI  294 (335)
Q Consensus       216 ~~~~~g~~~iQd~~s~l~~~~l~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~-ni  294 (335)
                      .+++.|.|..|....+++..++  ++|++|||+|||+|+.+.+++..  +..+|+++|+++.+++.+++|++..|+. ++
T Consensus       194 ~~~~tg~f~~~~~~~~~~~~~~--~~~~~VLDl~~G~G~~~~~la~~--g~~~v~~vD~s~~~l~~a~~n~~~n~~~~~v  269 (396)
T 2as0_A          194 RGQKTGFFLDQRENRLALEKWV--QPGDRVLDVFTYTGGFAIHAAIA--GADEVIGIDKSPRAIETAKENAKLNGVEDRM  269 (396)
T ss_dssp             SSSSSCCCSTTHHHHHHHGGGC--CTTCEEEETTCTTTHHHHHHHHT--TCSEEEEEESCHHHHHHHHHHHHHTTCGGGE
T ss_pred             cccccCccCCHHHHHHHHHHHh--hCCCeEEEecCCCCHHHHHHHHC--CCCEEEEEeCCHHHHHHHHHHHHHcCCCccc
Confidence            4567788877877777666553  47899999999999999999976  3569999999999999999999999997 89


Q ss_pred             EEEeccCCCCCCC----CCCCceEEEEEEeccccc
Q 019802          295 EVLHGDFLNLDPK----DPAYSEVSLIFCIFTWMI  325 (335)
Q Consensus       295 ~~~~~D~~~~~~~----~~~fd~V~~IllD~~cs~  325 (335)
                      +++++|+.++.+.    ...||   .|++|||..+
T Consensus       270 ~~~~~d~~~~~~~~~~~~~~fD---~Vi~dpP~~~  301 (396)
T 2as0_A          270 KFIVGSAFEEMEKLQKKGEKFD---IVVLDPPAFV  301 (396)
T ss_dssp             EEEESCHHHHHHHHHHTTCCEE---EEEECCCCSC
T ss_pred             eEEECCHHHHHHHHHhhCCCCC---EEEECCCCCC
Confidence            9999999876431    34565   5999999854

>2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A*

Probab=99.10  E-value=6.4e-11  Score=113.37  Aligned_cols=104  Identities=14%  Similarity=0.083  Sum_probs=83.9

Q ss_pred             CcccccceEEecCchHHHHHHHcCCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCC--
Q 019802          215 HPLIVNGCVFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAA--  292 (335)
Q Consensus       215 ~~~~~~g~~~iQd~~s~l~~~~l~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~--  292 (335)
                      .++++.|.|.-|.....++...+  .+|.+|||+|||+|+.+.+++..  +..+|+++|+|+.+++.+++|++..|+.  
T Consensus       188 ~~~~~t~ff~~~~~~~~~~~~~~--~~~~~VLDl~cGtG~~sl~la~~--ga~~V~~vD~s~~al~~A~~N~~~n~~~~~  263 (385)
T 2b78_A          188 NDGLMTGIFLDQRQVRNELINGS--AAGKTVLNLFSYTAAFSVAAAMG--GAMATTSVDLAKRSRALSLAHFEANHLDMA  263 (385)
T ss_dssp             SSSSCCSSCGGGHHHHHHHHHTT--TBTCEEEEETCTTTHHHHHHHHT--TBSEEEEEESCTTHHHHHHHHHHHTTCCCT
T ss_pred             cccccCCcCCcHHHHHHHHHHHh--cCCCeEEEEeeccCHHHHHHHHC--CCCEEEEEECCHHHHHHHHHHHHHcCCCcc
Confidence            35667788866776667776654  57899999999999999999975  3458999999999999999999999997  


Q ss_pred             cEEEEeccCCCCCC----CCCCCceEEEEEEeccccc
Q 019802          293 NIEVLHGDFLNLDP----KDPAYSEVSLIFCIFTWMI  325 (335)
Q Consensus       293 ni~~~~~D~~~~~~----~~~~fd~V~~IllD~~cs~  325 (335)
                      +++++++|+.+..+    ....||   .|++|||+.+
T Consensus       264 ~v~~~~~D~~~~l~~~~~~~~~fD---~Ii~DPP~~~  297 (385)
T 2b78_A          264 NHQLVVMDVFDYFKYARRHHLTYD---IIIIDPPSFA  297 (385)
T ss_dssp             TEEEEESCHHHHHHHHHHTTCCEE---EEEECCCCC-
T ss_pred             ceEEEECCHHHHHHHHHHhCCCcc---EEEECCCCCC
Confidence            89999999977432    123465   5999999964

>1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13

Probab=99.09  E-value=5.4e-10  Score=101.75  Aligned_cols=91  Identities=20%  Similarity=0.200  Sum_probs=77.5

Q ss_pred             HHHHHHHcCCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCC-CcEEEEeccCCCCCCCC
Q 019802          230 SSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGA-ANIEVLHGDFLNLDPKD  308 (335)
Q Consensus       230 s~l~~~~l~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~-~ni~~~~~D~~~~~~~~  308 (335)
                      +..+...+++.++.+|||+|||+|..+..++..+++.++|+++|+++.+++.+++|+++.|+ .++.+.++|+.+. ..+
T Consensus       101 ~~~i~~~~~~~~~~~VLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~~~  179 (277)
T 1o54_A          101 SSFIAMMLDVKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISEG-FDE  179 (277)
T ss_dssp             HHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGGC-CSC
T ss_pred             HHHHHHHhCCCCCCEEEEECCcCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHc-ccC
Confidence            34556677889999999999999999999999877678999999999999999999999998 6799999999876 333


Q ss_pred             CCCceEEEEEEecccc
Q 019802          309 PAYSEVSLIFCIFTWM  324 (335)
Q Consensus       309 ~~fd~V~~IllD~~cs  324 (335)
                      ..||   .|++|+|+.
T Consensus       180 ~~~D---~V~~~~~~~  192 (277)
T 1o54_A          180 KDVD---ALFLDVPDP  192 (277)
T ss_dssp             CSEE---EEEECCSCG
T ss_pred             CccC---EEEECCcCH
Confidence            4455   588898765

>2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638}

Probab=99.09  E-value=6e-10  Score=106.10  Aligned_cols=106  Identities=8%  Similarity=0.020  Sum_probs=85.0

Q ss_pred             cccccceEEecCchHHHHHHHc-CCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcE
Q 019802          216 PLIVNGCVFLQGKASSMVAAAL-APKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANI  294 (335)
Q Consensus       216 ~~~~~g~~~iQd~~s~l~~~~l-~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni  294 (335)
                      ..|.+++...|+..++++.... ...+|.+|||+| |+|..+..++.. ++.++|+++|+++.+++.+++|+++.|+.+|
T Consensus       146 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~VLDlG-G~G~~~~~la~~-~~~~~v~~vDi~~~~l~~a~~~~~~~g~~~v  223 (373)
T 2qm3_A          146 HEFDQAYVTPETTVARVILMHTRGDLENKDIFVLG-DDDLTSIALMLS-GLPKRIAVLDIDERLTKFIEKAANEIGYEDI  223 (373)
T ss_dssp             GGGTCCCBCHHHHHHHHHHHHHTTCSTTCEEEEES-CTTCHHHHHHHH-TCCSEEEEECSCHHHHHHHHHHHHHHTCCCE
T ss_pred             hhcCCeecCHHHHHHHHHHHhhcCCCCCCEEEEEC-CCCHHHHHHHHh-CCCCEEEEEECCHHHHHHHHHHHHHcCCCCE
Confidence            3466777777777776664422 344789999999 999999999876 4457999999999999999999999999889


Q ss_pred             EEEeccCCC-CCC-CCCCCceEEEEEEecccccc
Q 019802          295 EVLHGDFLN-LDP-KDPAYSEVSLIFCIFTWMII  326 (335)
Q Consensus       295 ~~~~~D~~~-~~~-~~~~fd~V~~IllD~~cs~~  326 (335)
                      +++++|+.+ ++. .+++||.   |++|+|+...
T Consensus       224 ~~~~~D~~~~l~~~~~~~fD~---Vi~~~p~~~~  254 (373)
T 2qm3_A          224 EIFTFDLRKPLPDYALHKFDT---FITDPPETLE  254 (373)
T ss_dssp             EEECCCTTSCCCTTTSSCBSE---EEECCCSSHH
T ss_pred             EEEEChhhhhchhhccCCccE---EEECCCCchH
Confidence            999999998 553 2456774   8999998754

>3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis}

Probab=99.09  E-value=2.3e-10  Score=97.98  Aligned_cols=81  Identities=12%  Similarity=0.188  Sum_probs=69.8

Q ss_pred             CCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCC--CCCCCceEEEE
Q 019802          240 KPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDP--KDPAYSEVSLI  317 (335)
Q Consensus       240 ~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~~--~~~~fd~V~~I  317 (335)
                      .++.+|||+|||+|..+..++..  +..+|+++|+|+.+++.+++|++..|+.+++++++|+.++..  .+.+||.   |
T Consensus        43 ~~~~~vLDlgcG~G~~~~~~~~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~---i  117 (189)
T 3p9n_A           43 LTGLAVLDLYAGSGALGLEALSR--GAASVLFVESDQRSAAVIARNIEALGLSGATLRRGAVAAVVAAGTTSPVDL---V  117 (189)
T ss_dssp             CTTCEEEEETCTTCHHHHHHHHT--TCSEEEEEECCHHHHHHHHHHHHHHTCSCEEEEESCHHHHHHHCCSSCCSE---E
T ss_pred             CCCCEEEEeCCCcCHHHHHHHHC--CCCeEEEEECCHHHHHHHHHHHHHcCCCceEEEEccHHHHHhhccCCCccE---E
Confidence            57899999999999999988774  456899999999999999999999999889999999988643  2467885   8


Q ss_pred             EEeccccc
Q 019802          318 FCIFTWMI  325 (335)
Q Consensus       318 llD~~cs~  325 (335)
                      ++|+|...
T Consensus       118 ~~~~p~~~  125 (189)
T 3p9n_A          118 LADPPYNV  125 (189)
T ss_dssp             EECCCTTS
T ss_pred             EECCCCCc
Confidence            88988654

>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus}

Probab=99.08  E-value=6.6e-10  Score=96.95  Aligned_cols=84  Identities=24%  Similarity=0.287  Sum_probs=74.5

Q ss_pred             HHHHHHcCCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCC
Q 019802          231 SMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPA  310 (335)
Q Consensus       231 ~l~~~~l~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~~~~~~  310 (335)
                      ..+...+.+.++.+|||+|||+|..+..++...++.++|+++|+++.+++.+++++...|+.+++++++|+.+++..+.+
T Consensus        27 ~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~  106 (219)
T 3dh0_A           27 EKVLKEFGLKEGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLGLKNVEVLKSEENKIPLPDNT  106 (219)
T ss_dssp             HHHHHHHTCCTTCEEEESSCTTCTTHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHHTCTTEEEEECBTTBCSSCSSC
T ss_pred             HHHHHHhCCCCCCEEEEEecCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCcEEEEecccccCCCCCCC
Confidence            34455677889999999999999999999999766789999999999999999999999998999999999998877777


Q ss_pred             CceE
Q 019802          311 YSEV  314 (335)
Q Consensus       311 fd~V  314 (335)
                      ||.|
T Consensus       107 fD~v  110 (219)
T 3dh0_A          107 VDFI  110 (219)
T ss_dssp             EEEE
T ss_pred             eeEE
Confidence            8753

>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A*

Probab=99.08  E-value=4.9e-10  Score=102.99  Aligned_cols=80  Identities=14%  Similarity=0.111  Sum_probs=67.9

Q ss_pred             HcCCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCceEE
Q 019802          236 ALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVS  315 (335)
Q Consensus       236 ~l~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~~~~~~fd~V~  315 (335)
                      ++.+++|++|||+|||||+.|..++.... +++|+++|+|+.+++.+++++++.|+.+|+++++|+.+++  +.+||.  
T Consensus       117 la~l~~g~rVLDIGcG~G~~ta~~lA~~~-ga~V~gIDis~~~l~~Ar~~~~~~gl~~v~~v~gDa~~l~--d~~FDv--  191 (298)
T 3fpf_A          117 LGRFRRGERAVFIGGGPLPLTGILLSHVY-GMRVNVVEIEPDIAELSRKVIEGLGVDGVNVITGDETVID--GLEFDV--  191 (298)
T ss_dssp             HTTCCTTCEEEEECCCSSCHHHHHHHHTT-CCEEEEEESSHHHHHHHHHHHHHHTCCSEEEEESCGGGGG--GCCCSE--
T ss_pred             HcCCCCcCEEEEECCCccHHHHHHHHHcc-CCEEEEEECCHHHHHHHHHHHHhcCCCCeEEEECchhhCC--CCCcCE--
Confidence            56889999999999999998865544433 5799999999999999999999999988999999999876  567986  


Q ss_pred             EEEEec
Q 019802          316 LIFCIF  321 (335)
Q Consensus       316 ~IllD~  321 (335)
                       |+++.
T Consensus       192 -V~~~a  196 (298)
T 3fpf_A          192 -LMVAA  196 (298)
T ss_dssp             -EEECT
T ss_pred             -EEECC
Confidence             55543

>2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii}

Probab=99.08  E-value=8.1e-10  Score=96.28  Aligned_cols=101  Identities=23%  Similarity=0.226  Sum_probs=79.7

Q ss_pred             cceEEecCchHHHHHHHcCCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEec
Q 019802          220 NGCVFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHG  299 (335)
Q Consensus       220 ~g~~~iQd~~s~l~~~~l~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~  299 (335)
                      .|....+......+...+.+.++.+|||+|||+|..+..+++..++.++|+++|+++.+++.+++++...|+.++.+.++
T Consensus        56 ~~~~~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~  135 (215)
T 2yxe_A           56 YGQTISAIHMVGMMCELLDLKPGMKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIPELAEKAERTLRKLGYDNVIVIVG  135 (215)
T ss_dssp             TTEEECCHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHTCTTEEEEES
T ss_pred             CCcEeCcHHHHHHHHHhhCCCCCCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEEC
Confidence            34444444444556667788899999999999999999999987656799999999999999999999999989999999


Q ss_pred             cCCCCCCCCCCCceEEEEEEeccc
Q 019802          300 DFLNLDPKDPAYSEVSLIFCIFTW  323 (335)
Q Consensus       300 D~~~~~~~~~~fd~V~~IllD~~c  323 (335)
                      |+....+....||.   |+++.+.
T Consensus       136 d~~~~~~~~~~fD~---v~~~~~~  156 (215)
T 2yxe_A          136 DGTLGYEPLAPYDR---IYTTAAG  156 (215)
T ss_dssp             CGGGCCGGGCCEEE---EEESSBB
T ss_pred             CcccCCCCCCCeeE---EEECCch
Confidence            98654333445664   6665443

>3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp}

Probab=99.08  E-value=1.3e-11  Score=110.75  Aligned_cols=100  Identities=12%  Similarity=0.221  Sum_probs=83.6

Q ss_pred             eEEecCchHHHHHHHcCCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCC-cEEEEecc
Q 019802          222 CVFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAA-NIEVLHGD  300 (335)
Q Consensus       222 ~~~iQd~~s~l~~~~l~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~-ni~~~~~D  300 (335)
                      .+.++...++++..++...++.+|||+|||+|..|.++++.++++++|+++|+++.+++.+++++++.|+. +|+++++|
T Consensus        41 ~~~i~~~~~~~l~~l~~~~~~~~VLDiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gd  120 (242)
T 3r3h_A           41 NMQVAPEQAQFMQMLIRLTRAKKVLELGTFTGYSALAMSLALPDDGQVITCDINEGWTKHAHPYWREAKQEHKIKLRLGP  120 (242)
T ss_dssp             GTSCCHHHHHHHHHHHHHHTCSEEEEEESCCSHHHHHHHHTSCTTCEEEEEECCCSSCCCSHHHHHHTTCTTTEEEEESC
T ss_pred             CCccCHHHHHHHHHHHhhcCcCEEEEeeCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcC
Confidence            34566777888887777778899999999999999999998876799999999999999999999999995 79999999


Q ss_pred             CCCCCCC------CCCCceEEEEEEecccc
Q 019802          301 FLNLDPK------DPAYSEVSLIFCIFTWM  324 (335)
Q Consensus       301 ~~~~~~~------~~~fd~V~~IllD~~cs  324 (335)
                      +.+..+.      ..+||   .|++|.+..
T Consensus       121 a~~~l~~~~~~~~~~~fD---~V~~d~~~~  147 (242)
T 3r3h_A          121 ALDTLHSLLNEGGEHQFD---FIFIDADKT  147 (242)
T ss_dssp             HHHHHHHHHHHHCSSCEE---EEEEESCGG
T ss_pred             HHHHHHHHhhccCCCCEe---EEEEcCChH
Confidence            9775432      34566   488887643

>1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A*

Probab=99.07  E-value=5.5e-10  Score=108.47  Aligned_cols=87  Identities=20%  Similarity=0.170  Sum_probs=74.7

Q ss_pred             HHcCCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCC----CCCCC
Q 019802          235 AALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLD----PKDPA  310 (335)
Q Consensus       235 ~~l~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~----~~~~~  310 (335)
                      ..+.+.++++|||+|||+|..+..++..   .++|+++|+|+.+++.+++|++..|+.|++++++|+.+..    ..+..
T Consensus       280 ~~l~~~~~~~VLDlgcG~G~~~~~la~~---~~~V~gvD~s~~al~~A~~n~~~~~~~~v~f~~~d~~~~l~~~~~~~~~  356 (433)
T 1uwv_A          280 EWLDVQPEDRVLDLFCGMGNFTLPLATQ---AASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKNG  356 (433)
T ss_dssp             HHHTCCTTCEEEEESCTTTTTHHHHHTT---SSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCTTSCCSSSGGGTTC
T ss_pred             HhhcCCCCCEEEECCCCCCHHHHHHHhh---CCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEECCHHHHhhhhhhhcCC
Confidence            4456778999999999999999999976   4799999999999999999999999999999999998832    23456


Q ss_pred             CceEEEEEEeccccccc
Q 019802          311 YSEVSLIFCIFTWMIIM  327 (335)
Q Consensus       311 fd~V~~IllD~~cs~~g  327 (335)
                      ||.   |++|||..|..
T Consensus       357 fD~---Vv~dPPr~g~~  370 (433)
T 1uwv_A          357 FDK---VLLDPARAGAA  370 (433)
T ss_dssp             CSE---EEECCCTTCCH
T ss_pred             CCE---EEECCCCccHH
Confidence            774   89999998753

>3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus}

Probab=99.07  E-value=2e-10  Score=101.97  Aligned_cols=98  Identities=13%  Similarity=0.198  Sum_probs=80.0

Q ss_pred             EEecCchHHHHHHHcCCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCC-cEEEEeccC
Q 019802          223 VFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAA-NIEVLHGDF  301 (335)
Q Consensus       223 ~~iQd~~s~l~~~~l~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~-ni~~~~~D~  301 (335)
                      ..++.....++..++...++.+|||+|||+|..+..++... +.++|+++|+++.+++.+++++++.|+. +|+++++|+
T Consensus        53 ~~~~~~~~~~l~~~~~~~~~~~vLDiG~G~G~~~~~la~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~  131 (232)
T 3ntv_A           53 PIVDRLTLDLIKQLIRMNNVKNILEIGTAIGYSSMQFASIS-DDIHVTTIERNETMIQYAKQNLATYHFENQVRIIEGNA  131 (232)
T ss_dssp             CCCCHHHHHHHHHHHHHHTCCEEEEECCSSSHHHHHHHTTC-TTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCG
T ss_pred             CCcCHHHHHHHHHHHhhcCCCEEEEEeCchhHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCH
Confidence            34556666777777777789999999999999999999853 4689999999999999999999999985 799999999


Q ss_pred             CCCCC--CCCCCceEEEEEEecccc
Q 019802          302 LNLDP--KDPAYSEVSLIFCIFTWM  324 (335)
Q Consensus       302 ~~~~~--~~~~fd~V~~IllD~~cs  324 (335)
                      .+..+  .+.+||   .|++|.++.
T Consensus       132 ~~~~~~~~~~~fD---~V~~~~~~~  153 (232)
T 3ntv_A          132 LEQFENVNDKVYD---MIFIDAAKA  153 (232)
T ss_dssp             GGCHHHHTTSCEE---EEEEETTSS
T ss_pred             HHHHHhhccCCcc---EEEEcCcHH
Confidence            87543  245566   478887654

>1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53

Probab=99.06  E-value=1.1e-09  Score=95.57  Aligned_cols=79  Identities=16%  Similarity=0.154  Sum_probs=68.8

Q ss_pred             CCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCC--CCCCCCceEEEE
Q 019802          240 KPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLD--PKDPAYSEVSLI  317 (335)
Q Consensus       240 ~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~--~~~~~fd~V~~I  317 (335)
                      .++.+|||+|||+|..+..++...+ +.+++++|+++.+++.+++++++.|+.|+.++++|+.+++  ..+.+||.   |
T Consensus        40 ~~~~~vLDiGcG~G~~~~~la~~~p-~~~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~D~---i  115 (214)
T 1yzh_A           40 NDNPIHVEVGSGKGAFVSGMAKQNP-DINYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDGSDLTDYFEDGEIDR---L  115 (214)
T ss_dssp             SCCCEEEEESCTTSHHHHHHHHHCT-TSEEEEEESCHHHHHHHHHHHHHHCCSSEEEEECCSSCGGGTSCTTCCSE---E
T ss_pred             CCCCeEEEEccCcCHHHHHHHHHCC-CCCEEEEEcCHHHHHHHHHHHHHcCCCCEEEEeCCHHHHHhhcCCCCCCE---E
Confidence            4688999999999999999999854 5799999999999999999999999999999999999876  45567886   5


Q ss_pred             EEecc
Q 019802          318 FCIFT  322 (335)
Q Consensus       318 llD~~  322 (335)
                      ++++|
T Consensus       116 ~~~~~  120 (214)
T 1yzh_A          116 YLNFS  120 (214)
T ss_dssp             EEESC
T ss_pred             EEECC
Confidence            55554

>2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46

Probab=99.05  E-value=2.4e-10  Score=99.32  Aligned_cols=78  Identities=17%  Similarity=0.241  Sum_probs=66.4

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCC--CcEEEEeccCCCCCCC--CCC-CceEE
Q 019802          241 PGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGA--ANIEVLHGDFLNLDPK--DPA-YSEVS  315 (335)
Q Consensus       241 ~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~--~ni~~~~~D~~~~~~~--~~~-fd~V~  315 (335)
                      ++.+|||+|||+|..+..++..  +..+|+++|+|+.+++.+++|++..|+  .+++++++|+.++.+.  +.+ ||   
T Consensus        53 ~~~~vLDlGcGtG~~~~~~~~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD---  127 (201)
T 2ift_A           53 HQSECLDGFAGSGSLGFEALSR--QAKKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFLKQPQNQPHFD---  127 (201)
T ss_dssp             TTCEEEETTCTTCHHHHHHHHT--TCSEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHTTSCCSSCCEE---
T ss_pred             CCCeEEEcCCccCHHHHHHHHc--cCCEEEEEECCHHHHHHHHHHHHHhCCCccceEEEECCHHHHHHhhccCCCCC---
Confidence            6889999999999999987765  236899999999999999999999998  6899999999876442  345 55   


Q ss_pred             EEEEeccc
Q 019802          316 LIFCIFTW  323 (335)
Q Consensus       316 ~IllD~~c  323 (335)
                      .|++|+|.
T Consensus       128 ~I~~~~~~  135 (201)
T 2ift_A          128 VVFLDPPF  135 (201)
T ss_dssp             EEEECCCS
T ss_pred             EEEECCCC
Confidence            58999884

>3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum}

Probab=99.05  E-value=1.7e-10  Score=102.97  Aligned_cols=98  Identities=16%  Similarity=0.133  Sum_probs=79.7

Q ss_pred             EecCchHHHHHHHcCCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCC-cEEEEeccCC
Q 019802          224 FLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAA-NIEVLHGDFL  302 (335)
Q Consensus       224 ~iQd~~s~l~~~~l~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~-ni~~~~~D~~  302 (335)
                      .++...++++..++...++.+|||+|||+|+.+.++++.+++.++|+++|+++.+++.+++++++.|+. +|+++++|+.
T Consensus        53 ~~~~~~~~~l~~l~~~~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~  132 (237)
T 3c3y_A           53 STSPLAGQLMSFVLKLVNAKKTIEVGVFTGYSLLLTALSIPDDGKITAIDFDREAYEIGLPFIRKAGVEHKINFIESDAM  132 (237)
T ss_dssp             SCCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHH
T ss_pred             CcCHHHHHHHHHHHHhhCCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHH
Confidence            345556666666666667889999999999999999999876799999999999999999999999996 5999999997


Q ss_pred             CCCC-------CCCCCceEEEEEEecccc
Q 019802          303 NLDP-------KDPAYSEVSLIFCIFTWM  324 (335)
Q Consensus       303 ~~~~-------~~~~fd~V~~IllD~~cs  324 (335)
                      +..+       ...+||   .|++|+.+.
T Consensus       133 ~~l~~l~~~~~~~~~fD---~I~~d~~~~  158 (237)
T 3c3y_A          133 LALDNLLQGQESEGSYD---FGFVDADKP  158 (237)
T ss_dssp             HHHHHHHHSTTCTTCEE---EEEECSCGG
T ss_pred             HHHHHHHhccCCCCCcC---EEEECCchH
Confidence            6422       134565   588897764

>2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str}

Probab=99.05  E-value=6.4e-10  Score=100.59  Aligned_cols=95  Identities=17%  Similarity=0.218  Sum_probs=78.3

Q ss_pred             chHHHHHHHcCCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHH---hCCC-cEEEEeccCCC
Q 019802          228 KASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKL---SGAA-NIEVLHGDFLN  303 (335)
Q Consensus       228 ~~s~l~~~~l~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~---~g~~-ni~~~~~D~~~  303 (335)
                      ..+.+++..+...++.+|||+|||+|..+..++...+ ..+|+++|+++.+++.+++|++.   .|+. +++++++|+.+
T Consensus        23 ~D~~lL~~~~~~~~~~~VLDlG~G~G~~~l~la~~~~-~~~v~gvDi~~~~~~~a~~n~~~~~~~~l~~~v~~~~~D~~~  101 (260)
T 2ozv_A           23 MDAMLLASLVADDRACRIADLGAGAGAAGMAVAARLE-KAEVTLYERSQEMAEFARRSLELPDNAAFSARIEVLEADVTL  101 (260)
T ss_dssp             CHHHHHHHTCCCCSCEEEEECCSSSSHHHHHHHHHCT-TEEEEEEESSHHHHHHHHHHTTSGGGTTTGGGEEEEECCTTC
T ss_pred             cHHHHHHHHhcccCCCEEEEeCChHhHHHHHHHHhCC-CCeEEEEECCHHHHHHHHHHHHhhhhCCCcceEEEEeCCHHH
Confidence            3477888888888899999999999999999999853 58999999999999999999998   8886 49999999988


Q ss_pred             CC-------CCCCCCceEEEEEEecccccc
Q 019802          304 LD-------PKDPAYSEVSLIFCIFTWMII  326 (335)
Q Consensus       304 ~~-------~~~~~fd~V~~IllD~~cs~~  326 (335)
                      +.       ..+.+||   .|++|||....
T Consensus       102 ~~~~~~~~~~~~~~fD---~Vv~nPPy~~~  128 (260)
T 2ozv_A          102 RAKARVEAGLPDEHFH---HVIMNPPYNDA  128 (260)
T ss_dssp             CHHHHHHTTCCTTCEE---EEEECCCC---
T ss_pred             HhhhhhhhccCCCCcC---EEEECCCCcCC
Confidence            72       2334455   69999998765

>2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53

Probab=99.05  E-value=5.5e-10  Score=97.92  Aligned_cols=74  Identities=18%  Similarity=0.082  Sum_probs=65.6

Q ss_pred             CCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCC--CCCCCCceE
Q 019802          240 KPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLD--PKDPAYSEV  314 (335)
Q Consensus       240 ~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~--~~~~~fd~V  314 (335)
                      .++.+|||+|||+|..+..++... +...|+++|+|+.+++.+++++++.|+.|+.++++|+.+++  ..+.+||.|
T Consensus        37 ~~~~~vLDiGcG~G~~~~~la~~~-p~~~v~giD~s~~~l~~a~~~~~~~~~~nv~~~~~d~~~l~~~~~~~~~d~v  112 (213)
T 2fca_A           37 NDNPIHIEVGTGKGQFISGMAKQN-PDINYIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDADTLTDVFEPGEVKRV  112 (213)
T ss_dssp             SCCCEEEEECCTTSHHHHHHHHHC-TTSEEEEECSCHHHHHHHHHHHHHSCCSSEEEECCCGGGHHHHCCTTSCCEE
T ss_pred             CCCceEEEEecCCCHHHHHHHHHC-CCCCEEEEEechHHHHHHHHHHHHcCCCCEEEEeCCHHHHHhhcCcCCcCEE
Confidence            467899999999999999999885 45899999999999999999999999999999999998865  445678864

>1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3

Probab=99.05  E-value=1.6e-09  Score=94.88  Aligned_cols=79  Identities=24%  Similarity=0.226  Sum_probs=63.2

Q ss_pred             cCCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCC---CCCCCCCce
Q 019802          237 LAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNL---DPKDPAYSE  313 (335)
Q Consensus       237 l~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~---~~~~~~fd~  313 (335)
                      +.+++|++|||+|||+|..+.++++..+ .++|+|+|+|+.+++.+.+++++.  .|+.++++|+...   .+..++|| 
T Consensus        53 ~~~~~g~~VLDlGcGtG~~~~~la~~~~-~~~V~gvD~s~~~l~~~~~~a~~~--~~v~~~~~d~~~~~~~~~~~~~fD-  128 (210)
T 1nt2_A           53 LKLRGDERVLYLGAASGTTVSHLADIVD-EGIIYAVEYSAKPFEKLLELVRER--NNIIPLLFDASKPWKYSGIVEKVD-  128 (210)
T ss_dssp             CCCCSSCEEEEETCTTSHHHHHHHHHTT-TSEEEEECCCHHHHHHHHHHHHHC--SSEEEECSCTTCGGGTTTTCCCEE-
T ss_pred             cCCCCCCEEEEECCcCCHHHHHHHHHcC-CCEEEEEECCHHHHHHHHHHHhcC--CCeEEEEcCCCCchhhccccccee-
Confidence            3467899999999999999999999876 689999999999998888777754  4799999999874   12224455 


Q ss_pred             EEEEEEec
Q 019802          314 VSLIFCIF  321 (335)
Q Consensus       314 V~~IllD~  321 (335)
                        .|++|.
T Consensus       129 --~V~~~~  134 (210)
T 1nt2_A          129 --LIYQDI  134 (210)
T ss_dssp             --EEEECC
T ss_pred             --EEEEec
Confidence              577763

>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21

Probab=99.04  E-value=1.8e-09  Score=96.52  Aligned_cols=81  Identities=16%  Similarity=0.163  Sum_probs=70.7

Q ss_pred             HHHHHHcCCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCC-cEEEEeccCCCCCCCCC
Q 019802          231 SMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAA-NIEVLHGDFLNLDPKDP  309 (335)
Q Consensus       231 ~l~~~~l~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~-ni~~~~~D~~~~~~~~~  309 (335)
                      ..+...+.+.++.+|||+|||+|..+..++...  ..+|+++|+|+.+++.++++++..|+. ++.+.++|+.++++ ++
T Consensus        26 ~~l~~~~~~~~~~~VLDiGcG~G~~~~~la~~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~-~~  102 (256)
T 1nkv_A           26 ATLGRVLRMKPGTRILDLGSGSGEMLCTWARDH--GITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGYVA-NE  102 (256)
T ss_dssp             HHHHHHTCCCTTCEEEEETCTTCHHHHHHHHHT--CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTTCCC-SS
T ss_pred             HHHHHhcCCCCCCEEEEECCCCCHHHHHHHHhc--CCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECChHhCCc-CC
Confidence            344556778899999999999999999999886  368999999999999999999999985 79999999999877 67


Q ss_pred             CCceE
Q 019802          310 AYSEV  314 (335)
Q Consensus       310 ~fd~V  314 (335)
                      +||.|
T Consensus       103 ~fD~V  107 (256)
T 1nkv_A          103 KCDVA  107 (256)
T ss_dssp             CEEEE
T ss_pred             CCCEE
Confidence            78864

>2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum}

Probab=99.04  E-value=9.9e-10  Score=96.65  Aligned_cols=90  Identities=21%  Similarity=0.256  Sum_probs=74.0

Q ss_pred             HHHHHc--CCCCCCEEEEEcCCCchHHHHHHHHcC----CCeEEEEEeCCHHHHHHHHHHHHHhC-----CCcEEEEecc
Q 019802          232 MVAAAL--APKPGWKVLDACSAPGNKTVHLAALMK----GKGKIVACELNKERVRRLKDTIKLSG-----AANIEVLHGD  300 (335)
Q Consensus       232 l~~~~l--~~~~g~~VLD~cagpG~kt~~la~~~~----~~g~i~a~D~~~~rl~~~~~~~~~~g-----~~ni~~~~~D  300 (335)
                      .+...+  .+.++.+|||+|||+|..+.++++..+    +.++|+++|+++.+++.+++++++.|     ..++.++++|
T Consensus        69 ~~~~~l~~~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d  148 (227)
T 2pbf_A           69 LSLKRLINVLKPGSRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENIKRDKPELLKIDNFKIIHKN  148 (227)
T ss_dssp             HHHHHHTTTSCTTCEEEEESCTTSHHHHHHHHHTTTTTCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGSSTTEEEEECC
T ss_pred             HHHHHHHhhCCCCCEEEEECCCCCHHHHHHHHHhcccCCCCCEEEEEeCCHHHHHHHHHHHHHcCccccccCCEEEEECC
Confidence            334445  578899999999999999999999875    56799999999999999999999998     6789999999


Q ss_pred             CCCCC----CCCCCCceEEEEEEecccc
Q 019802          301 FLNLD----PKDPAYSEVSLIFCIFTWM  324 (335)
Q Consensus       301 ~~~~~----~~~~~fd~V~~IllD~~cs  324 (335)
                      +.+..    +....||.   |+++.++.
T Consensus       149 ~~~~~~~~~~~~~~fD~---I~~~~~~~  173 (227)
T 2pbf_A          149 IYQVNEEEKKELGLFDA---IHVGASAS  173 (227)
T ss_dssp             GGGCCHHHHHHHCCEEE---EEECSBBS
T ss_pred             hHhcccccCccCCCcCE---EEECCchH
Confidence            98754    33455664   77776654

>4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A*

Probab=99.04  E-value=4.5e-10  Score=101.85  Aligned_cols=84  Identities=19%  Similarity=0.253  Sum_probs=68.3

Q ss_pred             cCchHHHHHHHcCCCCCCEEEEEcCCCchHHHHHHHHcCC-CeEEEEEeCCHHHHHHHHHHHHHhCCC-cEEEEeccCCC
Q 019802          226 QGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKG-KGKIVACELNKERVRRLKDTIKLSGAA-NIEVLHGDFLN  303 (335)
Q Consensus       226 Qd~~s~l~~~~l~~~~g~~VLD~cagpG~kt~~la~~~~~-~g~i~a~D~~~~rl~~~~~~~~~~g~~-ni~~~~~D~~~  303 (335)
                      ++....++...  ++||.+|||+|||+|..+..+++.... +.+|+++|+|+.|++.++++++..+.. +|+++++|+.+
T Consensus        57 ~~~i~~l~~~~--~~~~~~vLDlGcGtG~~~~~la~~~~~~~~~v~gvD~s~~ml~~A~~~~~~~~~~~~v~~~~~D~~~  134 (261)
T 4gek_A           57 ISMIGMLAERF--VQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRD  134 (261)
T ss_dssp             HHHHHHHHHHH--CCTTCEEEEETCTTTHHHHHHHHTCCSSSCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCTTT
T ss_pred             HHHHHHHHHHh--CCCCCEEEEEeCCCCHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHHHHhhccCceEEEeeccccc
Confidence            34444444444  478999999999999999999988753 459999999999999999999988864 69999999999


Q ss_pred             CCCCCCCCce
Q 019802          304 LDPKDPAYSE  313 (335)
Q Consensus       304 ~~~~~~~fd~  313 (335)
                      ++..  .||.
T Consensus       135 ~~~~--~~d~  142 (261)
T 4gek_A          135 IAIE--NASM  142 (261)
T ss_dssp             CCCC--SEEE
T ss_pred             cccc--cccc
Confidence            8753  3664

>3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0

Probab=99.04  E-value=9.6e-11  Score=102.97  Aligned_cols=98  Identities=13%  Similarity=0.191  Sum_probs=79.3

Q ss_pred             EEecCchHHHHHHHcCCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCc-EEEEeccC
Q 019802          223 VFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAAN-IEVLHGDF  301 (335)
Q Consensus       223 ~~iQd~~s~l~~~~l~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~n-i~~~~~D~  301 (335)
                      ..++...++++..++...++.+|||+|||+|..+.++++.+++.++|+++|+++.+++.+++++++.|+.+ ++++++|+
T Consensus        46 ~~~~~~~~~~l~~l~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~  125 (225)
T 3tr6_A           46 MQTAPEQAQLLALLVKLMQAKKVIDIGTFTGYSAIAMGLALPKDGTLITCDVDEKSTALAKEYWEKAGLSDKIGLRLSPA  125 (225)
T ss_dssp             GSCCHHHHHHHHHHHHHHTCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCH
T ss_pred             cccCHHHHHHHHHHHHhhCCCEEEEeCCcchHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeCCH
Confidence            34555566777777666788999999999999999999988767999999999999999999999999975 99999999


Q ss_pred             CCCCCC-C-----CCCceEEEEEEeccc
Q 019802          302 LNLDPK-D-----PAYSEVSLIFCIFTW  323 (335)
Q Consensus       302 ~~~~~~-~-----~~fd~V~~IllD~~c  323 (335)
                      .+..+. .     .+||   .|++|++.
T Consensus       126 ~~~~~~~~~~~~~~~fD---~v~~~~~~  150 (225)
T 3tr6_A          126 KDTLAELIHAGQAWQYD---LIYIDADK  150 (225)
T ss_dssp             HHHHHHHHTTTCTTCEE---EEEECSCG
T ss_pred             HHHHHHhhhccCCCCcc---EEEECCCH
Confidence            664221 1     3455   58888764

>1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24

Probab=99.03  E-value=1.4e-09  Score=99.88  Aligned_cols=96  Identities=25%  Similarity=0.340  Sum_probs=80.0

Q ss_pred             EEecCchHHHHHHHcCCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCC-CcEEEEeccC
Q 019802          223 VFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGA-ANIEVLHGDF  301 (335)
Q Consensus       223 ~~iQd~~s~l~~~~l~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~-~ni~~~~~D~  301 (335)
                      |.++......+...+++.++++|||+|||+|..|..+++.   .++|+++|+|+.+++.+++++...|. .+++++++|+
T Consensus        10 fl~d~~i~~~i~~~~~~~~~~~VLDiG~G~G~lt~~L~~~---~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~D~   86 (285)
T 1zq9_A           10 ILKNPLIINSIIDKAALRPTDVVLEVGPGTGNMTVKLLEK---AKKVVACELDPRLVAELHKRVQGTPVASKLQVLVGDV   86 (285)
T ss_dssp             EECCHHHHHHHHHHTCCCTTCEEEEECCTTSTTHHHHHHH---SSEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEESCT
T ss_pred             ccCCHHHHHHHHHhcCCCCCCEEEEEcCcccHHHHHHHhh---CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcce
Confidence            4445555666777888889999999999999999999987   35899999999999999999987776 6899999999


Q ss_pred             CCCCCCCCCCceEEEEEEecccccc
Q 019802          302 LNLDPKDPAYSEVSLIFCIFTWMII  326 (335)
Q Consensus       302 ~~~~~~~~~fd~V~~IllD~~cs~~  326 (335)
                      .+++..  .||   .|+.++|+..+
T Consensus        87 ~~~~~~--~fD---~vv~nlpy~~~  106 (285)
T 1zq9_A           87 LKTDLP--FFD---TCVANLPYQIS  106 (285)
T ss_dssp             TTSCCC--CCS---EEEEECCGGGH
T ss_pred             ecccch--hhc---EEEEecCcccc
Confidence            987654  577   47888887654

>2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13

Probab=99.03  E-value=8.6e-10  Score=103.29  Aligned_cols=92  Identities=20%  Similarity=0.293  Sum_probs=74.1

Q ss_pred             HHHHHHHcCCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhC-----------CCcEEEEe
Q 019802          230 SSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSG-----------AANIEVLH  298 (335)
Q Consensus       230 s~l~~~~l~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g-----------~~ni~~~~  298 (335)
                      +..+...+++.+|.+|||+|||+|..+..++..+++.++|+++|+++.+++.+++|++.+|           ..++++.+
T Consensus        94 ~~~~l~~l~~~~g~~VLDiG~G~G~~~~~la~~~g~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~ln~~~~~~~~v~~~~  173 (336)
T 2b25_A           94 INMILSMMDINPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIH  173 (336)
T ss_dssp             HHHHHHHHTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEE
T ss_pred             HHHHHHhcCCCCCCEEEEeCCCcCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhhcccccccccccCCceEEEE
Confidence            5556667789999999999999999999999987777899999999999999999999864           35799999


Q ss_pred             ccCCCCC--CCCCCCceEEEEEEecccc
Q 019802          299 GDFLNLD--PKDPAYSEVSLIFCIFTWM  324 (335)
Q Consensus       299 ~D~~~~~--~~~~~fd~V~~IllD~~cs  324 (335)
                      +|+.+..  ..+..|   |.|++|++..
T Consensus       174 ~d~~~~~~~~~~~~f---D~V~~~~~~~  198 (336)
T 2b25_A          174 KDISGATEDIKSLTF---DAVALDMLNP  198 (336)
T ss_dssp             SCTTCCC-------E---EEEEECSSST
T ss_pred             CChHHcccccCCCCe---eEEEECCCCH
Confidence            9998863  233345   4588887643

>3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A*

Probab=99.03  E-value=3.7e-10  Score=107.63  Aligned_cols=89  Identities=17%  Similarity=0.201  Sum_probs=75.4

Q ss_pred             HHHHHHcCCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCC-CcEEEEeccCCCCCCCCC
Q 019802          231 SMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGA-ANIEVLHGDFLNLDPKDP  309 (335)
Q Consensus       231 ~l~~~~l~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~-~ni~~~~~D~~~~~~~~~  309 (335)
                      ..+.... +.++.+|||+|||+|+.+..++... ..++|+++|+|+.+++.+++|+++.|+ .+|++.++|+.+++..+.
T Consensus       208 ~~l~~~~-~~~~~~vLD~gCGsG~~~i~~a~~~-~~~~v~g~Dis~~~l~~A~~n~~~~gl~~~i~~~~~D~~~~~~~~~  285 (373)
T 3tm4_A          208 NAMIELA-ELDGGSVLDPMCGSGTILIELALRR-YSGEIIGIEKYRKHLIGAEMNALAAGVLDKIKFIQGDATQLSQYVD  285 (373)
T ss_dssp             HHHHHHH-TCCSCCEEETTCTTCHHHHHHHHTT-CCSCEEEEESCHHHHHHHHHHHHHTTCGGGCEEEECCGGGGGGTCS
T ss_pred             HHHHHhh-cCCCCEEEEccCcCcHHHHHHHHhC-CCCeEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChhhCCcccC
Confidence            3344445 7889999999999999999999863 346899999999999999999999999 679999999999887655


Q ss_pred             CCceEEEEEEecccc
Q 019802          310 AYSEVSLIFCIFTWM  324 (335)
Q Consensus       310 ~fd~V~~IllD~~cs  324 (335)
                      +||   .|++|||..
T Consensus       286 ~fD---~Ii~npPyg  297 (373)
T 3tm4_A          286 SVD---FAISNLPYG  297 (373)
T ss_dssp             CEE---EEEEECCCC
T ss_pred             CcC---EEEECCCCC
Confidence            565   599999964

>3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A*

Probab=99.03  E-value=1.2e-09  Score=101.18  Aligned_cols=89  Identities=11%  Similarity=0.096  Sum_probs=75.0

Q ss_pred             ecCchHHHHHHHcC-CCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCC-cEEEEeccCC
Q 019802          225 LQGKASSMVAAALA-PKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAA-NIEVLHGDFL  302 (335)
Q Consensus       225 iQd~~s~l~~~~l~-~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~-ni~~~~~D~~  302 (335)
                      +++.....+...+. +.++.+|||+|||+|..+..+++..  ..+|+++|+++.+++.++++++..|+. +++++++|+.
T Consensus       100 ~~~~~~~~l~~~l~~~~~~~~vLDiGcG~G~~~~~la~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~  177 (312)
T 3vc1_A          100 LESAQAEFLMDHLGQAGPDDTLVDAGCGRGGSMVMAHRRF--GSRVEGVTLSAAQADFGNRRARELRIDDHVRSRVCNML  177 (312)
T ss_dssp             HHHHHHHHHHTTSCCCCTTCEEEEESCTTSHHHHHHHHHH--CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTT
T ss_pred             HHHHHHHHHHHHhccCCCCCEEEEecCCCCHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChh
Confidence            33344445556666 7889999999999999999999885  368999999999999999999999986 7999999999


Q ss_pred             CCCCCCCCCceEE
Q 019802          303 NLDPKDPAYSEVS  315 (335)
Q Consensus       303 ~~~~~~~~fd~V~  315 (335)
                      +++..+++||.|.
T Consensus       178 ~~~~~~~~fD~V~  190 (312)
T 3vc1_A          178 DTPFDKGAVTASW  190 (312)
T ss_dssp             SCCCCTTCEEEEE
T ss_pred             cCCCCCCCEeEEE
Confidence            9887777888653

>2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46

Probab=99.03  E-value=4.5e-10  Score=97.60  Aligned_cols=77  Identities=13%  Similarity=0.168  Sum_probs=66.0

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCC-CCCCCCCceEEEEEE
Q 019802          241 PGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNL-DPKDPAYSEVSLIFC  319 (335)
Q Consensus       241 ~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~-~~~~~~fd~V~~Ill  319 (335)
                      ++.+|||+|||+|..+..++..  ...+|+++|+|+.+++.+++|++..|+.+++++++|+.+. +.....||   .|++
T Consensus        54 ~~~~vLDlgcG~G~~~~~l~~~--~~~~V~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~D~~~~~~~~~~~fD---~V~~  128 (202)
T 2fpo_A           54 VDAQCLDCFAGSGALGLEALSR--YAAGATLIEMDRAVSQQLIKNLATLKAGNARVVNSNAMSFLAQKGTPHN---IVFV  128 (202)
T ss_dssp             TTCEEEETTCTTCHHHHHHHHT--TCSEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCHHHHHSSCCCCEE---EEEE
T ss_pred             CCCeEEEeCCCcCHHHHHHHhc--CCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHhhcCCCCC---EEEE
Confidence            6889999999999999988775  2358999999999999999999999998999999999873 43344565   5899


Q ss_pred             ecc
Q 019802          320 IFT  322 (335)
Q Consensus       320 D~~  322 (335)
                      |+|
T Consensus       129 ~~p  131 (202)
T 2fpo_A          129 DPP  131 (202)
T ss_dssp             CCS
T ss_pred             CCC
Confidence            988

>2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii}

Probab=99.02  E-value=8.3e-10  Score=93.03  Aligned_cols=91  Identities=14%  Similarity=0.110  Sum_probs=74.7

Q ss_pred             ecCchHHHHHHHcCCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCC
Q 019802          225 LQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNL  304 (335)
Q Consensus       225 iQd~~s~l~~~~l~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~  304 (335)
                      .++.-...+...+...++.+|||+|||+|..+..++.   +..+++++|+++.+++.++++++..|+++++++++|+.+ 
T Consensus        19 ~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~---~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~-   94 (183)
T 2yxd_A           19 TKEEIRAVSIGKLNLNKDDVVVDVGCGSGGMTVEIAK---RCKFVYAIDYLDGAIEVTKQNLAKFNIKNCQIIKGRAED-   94 (183)
T ss_dssp             CCHHHHHHHHHHHCCCTTCEEEEESCCCSHHHHHHHT---TSSEEEEEECSHHHHHHHHHHHHHTTCCSEEEEESCHHH-
T ss_pred             CHHHHHHHHHHHcCCCCCCEEEEeCCCCCHHHHHHHh---cCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEECCccc-
Confidence            3344445566667888999999999999999999987   457999999999999999999999999899999999987 


Q ss_pred             CCCCCCCceEEEEEEecc
Q 019802          305 DPKDPAYSEVSLIFCIFT  322 (335)
Q Consensus       305 ~~~~~~fd~V~~IllD~~  322 (335)
                      +..+..||.   |+++.+
T Consensus        95 ~~~~~~~D~---i~~~~~  109 (183)
T 2yxd_A           95 VLDKLEFNK---AFIGGT  109 (183)
T ss_dssp             HGGGCCCSE---EEECSC
T ss_pred             cccCCCCcE---EEECCc
Confidence            334456885   666654

>3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A*

Probab=99.02  E-value=4.6e-10  Score=98.98  Aligned_cols=81  Identities=17%  Similarity=0.141  Sum_probs=67.6

Q ss_pred             CCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCC-C--CCCCCCceEEE
Q 019802          240 KPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNL-D--PKDPAYSEVSL  316 (335)
Q Consensus       240 ~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~-~--~~~~~fd~V~~  316 (335)
                      .++..|||+|||+|..+..+|... ++..|+++|+|+.+++.+++++++.|++|+.++++|+.++ +  ..+++||.|..
T Consensus        33 ~~~~~vLDiGcG~G~~~~~lA~~~-p~~~v~giD~s~~~l~~a~~~~~~~~l~nv~~~~~Da~~~l~~~~~~~~~d~v~~  111 (218)
T 3dxy_A           33 REAPVTLEIGFGMGASLVAMAKDR-PEQDFLGIEVHSPGVGACLASAHEEGLSNLRVMCHDAVEVLHKMIPDNSLRMVQL  111 (218)
T ss_dssp             SCCCEEEEESCTTCHHHHHHHHHC-TTSEEEEECSCHHHHHHHHHHHHHTTCSSEEEECSCHHHHHHHHSCTTCEEEEEE
T ss_pred             CCCCeEEEEeeeChHHHHHHHHHC-CCCeEEEEEecHHHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHcCCCChheEEE
Confidence            367899999999999999999885 4579999999999999999999999999999999999884 2  35667776543


Q ss_pred             EEEec
Q 019802          317 IFCIF  321 (335)
Q Consensus       317 IllD~  321 (335)
                      .+.|+
T Consensus       112 ~~~~p  116 (218)
T 3dxy_A          112 FFPDP  116 (218)
T ss_dssp             ESCCC
T ss_pred             eCCCC
Confidence            33343

>2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A*

Probab=99.02  E-value=2.4e-10  Score=109.12  Aligned_cols=82  Identities=20%  Similarity=0.165  Sum_probs=69.9

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHh---------------CCCcEEEEeccCCCCC
Q 019802          241 PGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLS---------------GAANIEVLHGDFLNLD  305 (335)
Q Consensus       241 ~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~---------------g~~ni~~~~~D~~~~~  305 (335)
                      ++.+|||+|||+|.++++++..++. .+|+++|+++.+++.+++|+++.               |+.+++++++|+..+.
T Consensus        47 ~~~~VLDl~aGtG~~~l~~a~~~~~-~~V~avDi~~~av~~a~~N~~~n~~~~~~~~~~~~~~~gl~~i~v~~~Da~~~~  125 (378)
T 2dul_A           47 NPKIVLDALSATGIRGIRFALETPA-EEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLM  125 (378)
T ss_dssp             CCSEEEESSCTTSHHHHHHHHHSSC-SEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHHH
T ss_pred             CCCEEEECCCchhHHHHHHHHhCCC-CeEEEEECCHHHHHHHHHHHHHhcccccccccccccccCCCceEEEcCcHHHHH
Confidence            7899999999999999999998653 57999999999999999999999               8888999999997754


Q ss_pred             CC-CCCCceEEEEEEecccccc
Q 019802          306 PK-DPAYSEVSLIFCIFTWMII  326 (335)
Q Consensus       306 ~~-~~~fd~V~~IllD~~cs~~  326 (335)
                      .. ...||   .|++||||+..
T Consensus       126 ~~~~~~fD---~I~lDP~~~~~  144 (378)
T 2dul_A          126 AERHRYFH---FIDLDPFGSPM  144 (378)
T ss_dssp             HHSTTCEE---EEEECCSSCCH
T ss_pred             HhccCCCC---EEEeCCCCCHH
Confidence            22 23455   58899998753

>3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A*

Probab=99.02  E-value=5.6e-10  Score=100.50  Aligned_cols=75  Identities=19%  Similarity=0.233  Sum_probs=65.8

Q ss_pred             CCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCC---CCCCceE
Q 019802          239 PKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPK---DPAYSEV  314 (335)
Q Consensus       239 ~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~~~---~~~fd~V  314 (335)
                      ..++.+|||+|||+|..+..++... ++++|+++|+++.+++.+++|++++|+.||+++++|+.+++..   ..+||.|
T Consensus        78 ~~~~~~vLDiG~G~G~~~i~la~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~l~~v~~~~~d~~~~~~~~~~~~~fD~I  155 (249)
T 3g89_A           78 WQGPLRVLDLGTGAGFPGLPLKIVR-PELELVLVDATRKKVAFVERAIEVLGLKGARALWGRAEVLAREAGHREAYARA  155 (249)
T ss_dssp             CCSSCEEEEETCTTTTTHHHHHHHC-TTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEECCHHHHTTSTTTTTCEEEE
T ss_pred             cCCCCEEEEEcCCCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHhCCCceEEEECcHHHhhcccccCCCceEE
Confidence            3578899999999999999999875 4689999999999999999999999999999999999887653   3567753

>3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A*

Probab=99.02  E-value=3.4e-10  Score=108.32  Aligned_cols=83  Identities=14%  Similarity=0.058  Sum_probs=70.7

Q ss_pred             CCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCc--EEEEeccCCCCCC-C-CCCCceEE
Q 019802          240 KPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAAN--IEVLHGDFLNLDP-K-DPAYSEVS  315 (335)
Q Consensus       240 ~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~n--i~~~~~D~~~~~~-~-~~~fd~V~  315 (335)
                      ++|.+|||+|||+|+++++++..+++.++|+++|+++.+++.+++|++..|+.+  ++++++|+.++.. . ...||   
T Consensus        51 ~~g~~VLDlfaGtG~~sl~aa~~~~ga~~V~avDi~~~av~~~~~N~~~Ngl~~~~v~v~~~Da~~~l~~~~~~~fD---  127 (392)
T 3axs_A           51 GRPVKVADPLSASGIRAIRFLLETSCVEKAYANDISSKAIEIMKENFKLNNIPEDRYEIHGMEANFFLRKEWGFGFD---  127 (392)
T ss_dssp             CSCEEEEESSCTTSHHHHHHHHHCSCEEEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHHHSCCSSCEE---
T ss_pred             CCCCEEEECCCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHhCCCCceEEEEeCCHHHHHHHhhCCCCc---
Confidence            578999999999999999999986555799999999999999999999999987  9999999976532 2 23455   


Q ss_pred             EEEEeccccc
Q 019802          316 LIFCIFTWMI  325 (335)
Q Consensus       316 ~IllD~~cs~  325 (335)
                      .|++||+|+.
T Consensus       128 ~V~lDP~g~~  137 (392)
T 3axs_A          128 YVDLDPFGTP  137 (392)
T ss_dssp             EEEECCSSCC
T ss_pred             EEEECCCcCH
Confidence            5999998764

>1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A*

Probab=99.02  E-value=2.2e-10  Score=103.01  Aligned_cols=98  Identities=19%  Similarity=0.191  Sum_probs=80.8

Q ss_pred             EEecCchHHHHHHHcCCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCC-cEEEEeccC
Q 019802          223 VFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAA-NIEVLHGDF  301 (335)
Q Consensus       223 ~~iQd~~s~l~~~~l~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~-ni~~~~~D~  301 (335)
                      ..++....+++..++...++.+|||+|||+|..+.++++.+++.++|+++|+++.+++.+++++++.|+. +|+++++|+
T Consensus        61 ~~~~~~~~~ll~~l~~~~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~i~~~~gda  140 (247)
T 1sui_A           61 MTTSADEGQFLSMLLKLINAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPA  140 (247)
T ss_dssp             GSCCHHHHHHHHHHHHHTTCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCH
T ss_pred             CCcCHHHHHHHHHHHHhhCcCEEEEeCCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCH
Confidence            4456666777776666677889999999999999999999876789999999999999999999999984 699999999


Q ss_pred             CCCCC-------CCCCCceEEEEEEeccc
Q 019802          302 LNLDP-------KDPAYSEVSLIFCIFTW  323 (335)
Q Consensus       302 ~~~~~-------~~~~fd~V~~IllD~~c  323 (335)
                      .+..+       ...+||.   |++|+.+
T Consensus       141 ~~~l~~l~~~~~~~~~fD~---V~~d~~~  166 (247)
T 1sui_A          141 LPVLDEMIKDEKNHGSYDF---IFVDADK  166 (247)
T ss_dssp             HHHHHHHHHSGGGTTCBSE---EEECSCS
T ss_pred             HHHHHHHHhccCCCCCEEE---EEEcCch
Confidence            76422       1456885   7888764

>1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20

Probab=99.02  E-value=7.6e-10  Score=98.60  Aligned_cols=80  Identities=9%  Similarity=0.055  Sum_probs=67.3

Q ss_pred             CCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCC---CCCCceE
Q 019802          238 APKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPK---DPAYSEV  314 (335)
Q Consensus       238 ~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~~~---~~~fd~V  314 (335)
                      ...++.+|||+|||+|..+..++... +.++|+++|+|+.+++.+++++++.|+.||+++++|+.+++..   +.+||. 
T Consensus        67 ~~~~~~~vLDiG~G~G~~~~~la~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~-  144 (240)
T 1xdz_A           67 DFNQVNTICDVGAGAGFPSLPIKICF-PHLHVTIVDSLNKRITFLEKLSEALQLENTTFCHDRAETFGQRKDVRESYDI-  144 (240)
T ss_dssp             CGGGCCEEEEECSSSCTTHHHHHHHC-TTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEESCHHHHTTCTTTTTCEEE-
T ss_pred             ccCCCCEEEEecCCCCHHHHHHHHhC-CCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEeccHHHhcccccccCCccE-
Confidence            34578899999999999999999863 4589999999999999999999999998999999999887643   456765 


Q ss_pred             EEEEEec
Q 019802          315 SLIFCIF  321 (335)
Q Consensus       315 ~~IllD~  321 (335)
                        |+++.
T Consensus       145 --V~~~~  149 (240)
T 1xdz_A          145 --VTARA  149 (240)
T ss_dssp             --EEEEC
T ss_pred             --EEEec
Confidence              55543

>3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A*

Probab=99.01  E-value=1.5e-09  Score=100.14  Aligned_cols=94  Identities=17%  Similarity=0.173  Sum_probs=78.6

Q ss_pred             EEecCchHHHHHHHcCCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCC
Q 019802          223 VFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFL  302 (335)
Q Consensus       223 ~~iQd~~s~l~~~~l~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~  302 (335)
                      |.+...-...++..+++.++++|||+|||+|..|..+++.   ..+|+++|+++.+++.++++++  +..|++++++|+.
T Consensus        32 fL~d~~i~~~Iv~~l~~~~~~~VLEIG~G~G~lT~~La~~---~~~V~aVEid~~li~~a~~~~~--~~~~v~vi~gD~l  106 (295)
T 3gru_A           32 FLIDKNFVNKAVESANLTKDDVVLEIGLGKGILTEELAKN---AKKVYVIEIDKSLEPYANKLKE--LYNNIEIIWGDAL  106 (295)
T ss_dssp             EECCHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHH---SSEEEEEESCGGGHHHHHHHHH--HCSSEEEEESCTT
T ss_pred             ccCCHHHHHHHHHhcCCCCcCEEEEECCCchHHHHHHHhc---CCEEEEEECCHHHHHHHHHHhc--cCCCeEEEECchh
Confidence            4444444556677788899999999999999999999987   3699999999999999999998  4568999999999


Q ss_pred             CCCCCCCCCceEEEEEEecccc
Q 019802          303 NLDPKDPAYSEVSLIFCIFTWM  324 (335)
Q Consensus       303 ~~~~~~~~fd~V~~IllD~~cs  324 (335)
                      +++..+..||.   |+.++|..
T Consensus       107 ~~~~~~~~fD~---Iv~NlPy~  125 (295)
T 3gru_A          107 KVDLNKLDFNK---VVANLPYQ  125 (295)
T ss_dssp             TSCGGGSCCSE---EEEECCGG
T ss_pred             hCCcccCCccE---EEEeCccc
Confidence            98876667885   77887764

>1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32

Probab=99.01  E-value=1.2e-09  Score=94.67  Aligned_cols=79  Identities=18%  Similarity=0.197  Sum_probs=68.7

Q ss_pred             CCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCceEEEE
Q 019802          238 APKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVSLI  317 (335)
Q Consensus       238 ~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~~~~~~fd~V~~I  317 (335)
                      .+.++.+|||+|||+|..+..++..  +..+|+++|+++.+++.++++++..|+ +++++++|+.+++   ..||.   |
T Consensus        46 ~~~~~~~vlD~g~G~G~~~~~l~~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~---~~~D~---v  116 (207)
T 1wy7_A           46 GDIEGKVVADLGAGTGVLSYGALLL--GAKEVICVEVDKEAVDVLIENLGEFKG-KFKVFIGDVSEFN---SRVDI---V  116 (207)
T ss_dssp             TSSTTCEEEEETCTTCHHHHHHHHT--TCSEEEEEESCHHHHHHHHHHTGGGTT-SEEEEESCGGGCC---CCCSE---E
T ss_pred             CCCCcCEEEEeeCCCCHHHHHHHHc--CCCEEEEEECCHHHHHHHHHHHHHcCC-CEEEEECchHHcC---CCCCE---E
Confidence            4668999999999999999999876  335899999999999999999999988 8999999999875   25774   8


Q ss_pred             EEeccccc
Q 019802          318 FCIFTWMI  325 (335)
Q Consensus       318 llD~~cs~  325 (335)
                      ++|+|+..
T Consensus       117 ~~~~p~~~  124 (207)
T 1wy7_A          117 IMNPPFGS  124 (207)
T ss_dssp             EECCCCSS
T ss_pred             EEcCCCcc
Confidence            99999653

>1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4

Probab=98.99  E-value=3.3e-09  Score=90.05  Aligned_cols=90  Identities=21%  Similarity=0.265  Sum_probs=75.8

Q ss_pred             chHHHHHHHcCCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCc--EEEEeccCCCCC
Q 019802          228 KASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAAN--IEVLHGDFLNLD  305 (335)
Q Consensus       228 ~~s~l~~~~l~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~n--i~~~~~D~~~~~  305 (335)
                      ..+..+...+...++.+|||+|||+|..+..++..   ..+++++|+++.+++.+++++...++.+  ++++++|+.+..
T Consensus        39 ~~~~~l~~~~~~~~~~~vLdiG~G~G~~~~~~~~~---~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~  115 (194)
T 1dus_A           39 KGTKILVENVVVDKDDDILDLGCGYGVIGIALADE---VKSTTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYENV  115 (194)
T ss_dssp             HHHHHHHHHCCCCTTCEEEEETCTTSHHHHHHGGG---SSEEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTTTC
T ss_pred             hHHHHHHHHcccCCCCeEEEeCCCCCHHHHHHHHc---CCeEEEEECCHHHHHHHHHHHHHcCCCccceEEEECchhccc
Confidence            45667777788889999999999999999999877   4799999999999999999999999987  999999998754


Q ss_pred             CCCCCCceEEEEEEecccc
Q 019802          306 PKDPAYSEVSLIFCIFTWM  324 (335)
Q Consensus       306 ~~~~~fd~V~~IllD~~cs  324 (335)
                      . ...||   .|+++++..
T Consensus       116 ~-~~~~D---~v~~~~~~~  130 (194)
T 1dus_A          116 K-DRKYN---KIITNPPIR  130 (194)
T ss_dssp             T-TSCEE---EEEECCCST
T ss_pred             c-cCCce---EEEECCCcc
Confidence            3 44565   578877643

>1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7

Probab=98.99  E-value=1.2e-09  Score=96.32  Aligned_cols=95  Identities=24%  Similarity=0.298  Sum_probs=74.0

Q ss_pred             cCchHHHHHHHc--CCCCCCEEEEEcCCCchHHHHHHHHcCC-----CeEEEEEeCCHHHHHHHHHHHHHhC-----CCc
Q 019802          226 QGKASSMVAAAL--APKPGWKVLDACSAPGNKTVHLAALMKG-----KGKIVACELNKERVRRLKDTIKLSG-----AAN  293 (335)
Q Consensus       226 Qd~~s~l~~~~l--~~~~g~~VLD~cagpG~kt~~la~~~~~-----~g~i~a~D~~~~rl~~~~~~~~~~g-----~~n  293 (335)
                      |......+...+  .+.++.+|||+|||+|..+.++++.++.     .++|+++|+++.+++.+++++++.|     ..+
T Consensus        67 ~p~~~~~~~~~l~~~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~  146 (227)
T 1r18_A           67 APHMHAFALEYLRDHLKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQ  146 (227)
T ss_dssp             CHHHHHHHHHHTTTTCCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred             ChHHHHHHHHHHHhhCCCCCEEEEECCCccHHHHHHHHhcccccCCccCEEEEEEcCHHHHHHHHHHHHhcCccccCCCc
Confidence            444344445555  4788999999999999999999997653     3699999999999999999999877     678


Q ss_pred             EEEEeccCCCCCCCCCCCceEEEEEEeccc
Q 019802          294 IEVLHGDFLNLDPKDPAYSEVSLIFCIFTW  323 (335)
Q Consensus       294 i~~~~~D~~~~~~~~~~fd~V~~IllD~~c  323 (335)
                      +.++++|+.+..+....||.   |+++.++
T Consensus       147 v~~~~~d~~~~~~~~~~fD~---I~~~~~~  173 (227)
T 1r18_A          147 LLIVEGDGRKGYPPNAPYNA---IHVGAAA  173 (227)
T ss_dssp             EEEEESCGGGCCGGGCSEEE---EEECSCB
T ss_pred             eEEEECCcccCCCcCCCccE---EEECCch
Confidence            99999999873322245664   6776654

>1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A*

Probab=98.98  E-value=2.1e-09  Score=95.39  Aligned_cols=101  Identities=20%  Similarity=0.258  Sum_probs=79.2

Q ss_pred             cccceEEecCchHHHHHHHcCCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEE
Q 019802          218 IVNGCVFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVL  297 (335)
Q Consensus       218 ~~~g~~~iQd~~s~l~~~~l~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~  297 (335)
                      |..|....+......+...+.+.++.+|||+|||+|..+..+++..+  ++|+++|+++.+++.++++++..|+.++.+.
T Consensus        68 ~~~~~~~~~~~~~~~~~~~l~~~~~~~vLdiG~G~G~~~~~la~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~  145 (235)
T 1jg1_A           68 IPAGQTVSAPHMVAIMLEIANLKPGMNILEVGTGSGWNAALISEIVK--TDVYTIERIPELVEFAKRNLERAGVKNVHVI  145 (235)
T ss_dssp             CSTTCEECCHHHHHHHHHHHTCCTTCCEEEECCTTSHHHHHHHHHHC--SCEEEEESCHHHHHHHHHHHHHTTCCSEEEE
T ss_pred             cCCCceeccHHHHHHHHHhcCCCCCCEEEEEeCCcCHHHHHHHHHhC--CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEE
Confidence            34555555665566667778889999999999999999999999864  7899999999999999999999999899999


Q ss_pred             eccCCCCCCCCCCCceEEEEEEeccc
Q 019802          298 HGDFLNLDPKDPAYSEVSLIFCIFTW  323 (335)
Q Consensus       298 ~~D~~~~~~~~~~fd~V~~IllD~~c  323 (335)
                      ++|+....+....||   .|+++.+.
T Consensus       146 ~~d~~~~~~~~~~fD---~Ii~~~~~  168 (235)
T 1jg1_A          146 LGDGSKGFPPKAPYD---VIIVTAGA  168 (235)
T ss_dssp             ESCGGGCCGGGCCEE---EEEECSBB
T ss_pred             ECCcccCCCCCCCcc---EEEECCcH
Confidence            999832212222355   47766543

>3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca}

Probab=98.98  E-value=4.5e-10  Score=97.82  Aligned_cols=95  Identities=13%  Similarity=0.169  Sum_probs=75.4

Q ss_pred             ecCchHHHHHHHcCCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCC-cEEEEeccCCC
Q 019802          225 LQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAA-NIEVLHGDFLN  303 (335)
Q Consensus       225 iQd~~s~l~~~~l~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~-ni~~~~~D~~~  303 (335)
                      ++...+.++..++...++.+|||+|||+|..+.++++.+++.++|+++|+++.+++.+++++++.|+. +++++++|+.+
T Consensus        40 ~~~~~~~~l~~l~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~  119 (210)
T 3c3p_A           40 VDRQTGRLLYLLARIKQPQLVVVPGDGLGCASWWFARAISISSRVVMIDPDRDNVEHARRMLHDNGLIDRVELQVGDPLG  119 (210)
T ss_dssp             CCHHHHHHHHHHHHHHCCSEEEEESCGGGHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHSGGGGEEEEESCHHH
T ss_pred             cCHHHHHHHHHHHHhhCCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCceEEEEEecHHH
Confidence            44455555555555557789999999999999999998765689999999999999999999999985 49999999976


Q ss_pred             C-CCCCCCCceEEEEEEeccc
Q 019802          304 L-DPKDPAYSEVSLIFCIFTW  323 (335)
Q Consensus       304 ~-~~~~~~fd~V~~IllD~~c  323 (335)
                      . +.... |   |.|++|.++
T Consensus       120 ~~~~~~~-f---D~v~~~~~~  136 (210)
T 3c3p_A          120 IAAGQRD-I---DILFMDCDV  136 (210)
T ss_dssp             HHTTCCS-E---EEEEEETTT
T ss_pred             HhccCCC-C---CEEEEcCCh
Confidence            4 32233 5   568888654

>2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54

Probab=98.98  E-value=2.9e-09  Score=95.46  Aligned_cols=83  Identities=14%  Similarity=0.110  Sum_probs=67.6

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCc-EEEEeccCCCC---CCC---CCCCce
Q 019802          241 PGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAAN-IEVLHGDFLNL---DPK---DPAYSE  313 (335)
Q Consensus       241 ~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~n-i~~~~~D~~~~---~~~---~~~fd~  313 (335)
                      ++.+|||+|||+|..+..++.... .++|+++|+++.+++.+++|++..|+.+ ++++++|+.+.   +..   +.+||.
T Consensus        65 ~~~~vLDlG~G~G~~~~~la~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD~  143 (254)
T 2h00_A           65 TLRRGIDIGTGASCIYPLLGATLN-GWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQKTLLMDALKEESEIIYDF  143 (254)
T ss_dssp             CCCEEEEESCTTTTHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTCSSTTTSTTCCSCCBSE
T ss_pred             CCCEEEEeCCChhHHHHHHHHhCC-CCeEEEEECCHHHHHHHHHHHHHcCCCccEEEEEcchhhhhhhhhhcccCCcccE
Confidence            577999999999999999998753 4799999999999999999999999875 99999998762   222   246775


Q ss_pred             EEEEEEeccccccc
Q 019802          314 VSLIFCIFTWMIIM  327 (335)
Q Consensus       314 V~~IllD~~cs~~g  327 (335)
                         |+++||+...+
T Consensus       144 ---i~~npp~~~~~  154 (254)
T 2h00_A          144 ---CMCNPPFFANQ  154 (254)
T ss_dssp             ---EEECCCCC---
T ss_pred             ---EEECCCCccCc
Confidence               88999987655

>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli}

Probab=98.97  E-value=3.1e-09  Score=101.30  Aligned_cols=94  Identities=11%  Similarity=0.091  Sum_probs=78.2

Q ss_pred             cCchHHHHHHHcCCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCC---cEEEEeccCC
Q 019802          226 QGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAA---NIEVLHGDFL  302 (335)
Q Consensus       226 Qd~~s~l~~~~l~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~---ni~~~~~D~~  302 (335)
                      .|..+.++...+...++.+|||+|||+|..+..++... +..+|+++|+|+.+++.+++|++..|+.   ++++..+|+.
T Consensus       207 ~d~~~~~ll~~l~~~~~~~VLDlGcG~G~~s~~la~~~-p~~~V~gvD~s~~al~~Ar~n~~~ngl~~~~~v~~~~~D~~  285 (375)
T 4dcm_A          207 LDIGARFFMQHLPENLEGEIVDLGCGNGVIGLTLLDKN-PQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNAL  285 (375)
T ss_dssp             CCHHHHHHHHTCCCSCCSEEEEETCTTCHHHHHHHHHC-TTCEEEEEESCHHHHHHHHHHHHHHCGGGGGGEEEEECSTT
T ss_pred             ccHHHHHHHHhCcccCCCeEEEEeCcchHHHHHHHHHC-CCCEEEEEECcHHHHHHHHHHHHHcCCCcCceEEEEechhh
Confidence            35567777888888888999999999999999999984 4579999999999999999999999875   5889999998


Q ss_pred             CCCCCCCCCceEEEEEEecccc
Q 019802          303 NLDPKDPAYSEVSLIFCIFTWM  324 (335)
Q Consensus       303 ~~~~~~~~fd~V~~IllD~~cs  324 (335)
                      +. ..+.+||   .|++|+|..
T Consensus       286 ~~-~~~~~fD---~Ii~nppfh  303 (375)
T 4dcm_A          286 SG-VEPFRFN---AVLCNPPFH  303 (375)
T ss_dssp             TT-CCTTCEE---EEEECCCC-
T ss_pred             cc-CCCCCee---EEEECCCcc
Confidence            73 3344565   589998864

>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A*

Probab=98.97  E-value=3.9e-09  Score=94.34  Aligned_cols=75  Identities=19%  Similarity=0.284  Sum_probs=67.4

Q ss_pred             CCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCc-EEEEeccCCCCCCCCCCCceE
Q 019802          238 APKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAAN-IEVLHGDFLNLDPKDPAYSEV  314 (335)
Q Consensus       238 ~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~n-i~~~~~D~~~~~~~~~~fd~V  314 (335)
                      ...++.+|||+|||+|..+..+++..+  ++|+++|+|+.+++.+++++...|+.+ ++++++|+.+++..+.+||.|
T Consensus        43 ~~~~~~~vLDiG~G~G~~~~~l~~~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v  118 (257)
T 3f4k_A           43 ELTDDAKIADIGCGTGGQTLFLADYVK--GQITGIDLFPDFIEIFNENAVKANCADRVKGITGSMDNLPFQNEELDLI  118 (257)
T ss_dssp             CCCTTCEEEEETCTTSHHHHHHHHHCC--SEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCSSCTTCEEEE
T ss_pred             cCCCCCeEEEeCCCCCHHHHHHHHhCC--CeEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhCCCCCCCEEEE
Confidence            567889999999999999999999853  499999999999999999999999876 999999999988777778864

>1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A

Probab=98.96  E-value=4e-09  Score=92.77  Aligned_cols=79  Identities=27%  Similarity=0.329  Sum_probs=66.3

Q ss_pred             CCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCC---CCCCCceEE
Q 019802          239 PKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDP---KDPAYSEVS  315 (335)
Q Consensus       239 ~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~~---~~~~fd~V~  315 (335)
                      +.++++|||+|||+|..+.++++.+++.++|+++|+++.+++.+++++++.  .+++++++|+.+...   ...+|   |
T Consensus        71 ~~~~~~vLDlG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~~~~~~~~~--~~v~~~~~d~~~~~~~~~~~~~~---D  145 (227)
T 1g8a_A           71 IKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEER--RNIVPILGDATKPEEYRALVPKV---D  145 (227)
T ss_dssp             CCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSC--TTEEEEECCTTCGGGGTTTCCCE---E
T ss_pred             CCCCCEEEEEeccCCHHHHHHHHHhCCCeEEEEEECCHHHHHHHHHHHhcc--CCCEEEEccCCCcchhhcccCCc---e
Confidence            678999999999999999999998766689999999999999999998865  689999999987431   12334   5


Q ss_pred             EEEEecc
Q 019802          316 LIFCIFT  322 (335)
Q Consensus       316 ~IllD~~  322 (335)
                      .|++|++
T Consensus       146 ~v~~~~~  152 (227)
T 1g8a_A          146 VIFEDVA  152 (227)
T ss_dssp             EEEECCC
T ss_pred             EEEECCC
Confidence            6888876

>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae}

Probab=98.95  E-value=3.1e-09  Score=89.38  Aligned_cols=95  Identities=21%  Similarity=0.206  Sum_probs=73.1

Q ss_pred             ceEEecCchHHHHHHHcCCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCC-cEEEEec
Q 019802          221 GCVFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAA-NIEVLHG  299 (335)
Q Consensus       221 g~~~iQd~~s~l~~~~l~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~-ni~~~~~  299 (335)
                      |.+.-++.. ..+...+.+.++.+|||+|||+|..+.+++... +.++|+++|+++.+++.++++++..|+. ++ ++++
T Consensus         6 g~~t~~~~~-~~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~-~~~~   82 (178)
T 3hm2_A            6 GQLTKQHVR-ALAISALAPKPHETLWDIGGGSGSIAIEWLRST-PQTTAVCFEISEERRERILSNAINLGVSDRI-AVQQ   82 (178)
T ss_dssp             CCSHHHHHH-HHHHHHHCCCTTEEEEEESTTTTHHHHHHHTTS-SSEEEEEECSCHHHHHHHHHHHHTTTCTTSE-EEEC
T ss_pred             CcccHHHHH-HHHHHHhcccCCCeEEEeCCCCCHHHHHHHHHC-CCCeEEEEeCCHHHHHHHHHHHHHhCCCCCE-EEec
Confidence            444433333 334455678899999999999999999999875 4589999999999999999999999997 88 8889


Q ss_pred             cCCC-CCCCCCCCceEEEEEEec
Q 019802          300 DFLN-LDPKDPAYSEVSLIFCIF  321 (335)
Q Consensus       300 D~~~-~~~~~~~fd~V~~IllD~  321 (335)
                      |+.+ ++...++||.   |+++.
T Consensus        83 d~~~~~~~~~~~~D~---i~~~~  102 (178)
T 3hm2_A           83 GAPRAFDDVPDNPDV---IFIGG  102 (178)
T ss_dssp             CTTGGGGGCCSCCSE---EEECC
T ss_pred             chHhhhhccCCCCCE---EEECC
Confidence            9855 3322267886   55543

>2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46

Probab=98.95  E-value=1.4e-09  Score=91.89  Aligned_cols=86  Identities=19%  Similarity=0.222  Sum_probs=69.7

Q ss_pred             HHHcC-CCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCC-cEEEEeccCCCC-CCCCCC
Q 019802          234 AAALA-PKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAA-NIEVLHGDFLNL-DPKDPA  310 (335)
Q Consensus       234 ~~~l~-~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~-ni~~~~~D~~~~-~~~~~~  310 (335)
                      ...+. ..++.+|||+|||+|..+..++..  +..+|+++|+++.+++.++++++..|+. +++++++|+.+. +.....
T Consensus        23 ~~~l~~~~~~~~vLDlGcG~G~~~~~l~~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~  100 (177)
T 2esr_A           23 FNMIGPYFNGGRVLDLFAGSGGLAIEAVSR--GMSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAIDCLTGR  100 (177)
T ss_dssp             HHHHCSCCCSCEEEEETCTTCHHHHHHHHT--TCCEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHHHBCSC
T ss_pred             HHHHHhhcCCCeEEEeCCCCCHHHHHHHHc--CCCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcHHHhHHhhcCC
Confidence            33444 567899999999999999999876  3479999999999999999999999985 699999999873 322334


Q ss_pred             CceEEEEEEecccc
Q 019802          311 YSEVSLIFCIFTWM  324 (335)
Q Consensus       311 fd~V~~IllD~~cs  324 (335)
                      ||   .|++|+|..
T Consensus       101 fD---~i~~~~~~~  111 (177)
T 2esr_A          101 FD---LVFLDPPYA  111 (177)
T ss_dssp             EE---EEEECCSSH
T ss_pred             CC---EEEECCCCC
Confidence            54   688998863

>1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7

Probab=98.95  E-value=3.3e-09  Score=93.44  Aligned_cols=97  Identities=20%  Similarity=0.206  Sum_probs=77.3

Q ss_pred             ccceEEecCchHHHHHHHcCCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEe
Q 019802          219 VNGCVFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLH  298 (335)
Q Consensus       219 ~~g~~~iQd~~s~l~~~~l~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~  298 (335)
                      ..|....+......+...+.+.++.+|||+|||+|..+..+++..   .+|+++|+++.+++.+++++...|  ++.+++
T Consensus        48 ~~~~~~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~---~~v~~vD~~~~~~~~a~~~~~~~~--~v~~~~  122 (231)
T 1vbf_A           48 LPGINTTALNLGIFMLDELDLHKGQKVLEIGTGIGYYTALIAEIV---DKVVSVEINEKMYNYASKLLSYYN--NIKLIL  122 (231)
T ss_dssp             ETTEEECCHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHS---SEEEEEESCHHHHHHHHHHHTTCS--SEEEEE
T ss_pred             CCCCccCCHHHHHHHHHhcCCCCCCEEEEEcCCCCHHHHHHHHHc---CEEEEEeCCHHHHHHHHHHHhhcC--CeEEEE
Confidence            345555555555666777888899999999999999999999873   699999999999999999998877  899999


Q ss_pred             ccCCCCCCCCCCCceEEEEEEeccc
Q 019802          299 GDFLNLDPKDPAYSEVSLIFCIFTW  323 (335)
Q Consensus       299 ~D~~~~~~~~~~fd~V~~IllD~~c  323 (335)
                      +|+.+..+.+.+||.   |+++.++
T Consensus       123 ~d~~~~~~~~~~fD~---v~~~~~~  144 (231)
T 1vbf_A          123 GDGTLGYEEEKPYDR---VVVWATA  144 (231)
T ss_dssp             SCGGGCCGGGCCEEE---EEESSBB
T ss_pred             CCcccccccCCCccE---EEECCcH
Confidence            999874333455664   6666543

>2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens}

Probab=98.95  E-value=3.2e-09  Score=93.92  Aligned_cols=81  Identities=25%  Similarity=0.257  Sum_probs=67.3

Q ss_pred             cCCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCC---CCCCCCce
Q 019802          237 LAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLD---PKDPAYSE  313 (335)
Q Consensus       237 l~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~---~~~~~fd~  313 (335)
                      +.+.++++|||+|||+|..+.++++..++.++|+++|+++.+++.+.+++++.  .+++++++|+.+..   ..+.+|| 
T Consensus        73 ~~~~~~~~vLDlG~G~G~~~~~la~~~g~~~~v~gvD~s~~~i~~~~~~a~~~--~~v~~~~~d~~~~~~~~~~~~~~D-  149 (233)
T 2ipx_A           73 IHIKPGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRDLINLAKKR--TNIIPVIEDARHPHKYRMLIAMVD-  149 (233)
T ss_dssp             CCCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHC--TTEEEECSCTTCGGGGGGGCCCEE-
T ss_pred             ecCCCCCEEEEEcccCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHhhcc--CCeEEEEcccCChhhhcccCCcEE-
Confidence            44678999999999999999999998766689999999999999988888875  68999999998843   2344555 


Q ss_pred             EEEEEEecc
Q 019802          314 VSLIFCIFT  322 (335)
Q Consensus       314 V~~IllD~~  322 (335)
                        .|++|++
T Consensus       150 --~V~~~~~  156 (233)
T 2ipx_A          150 --VIFADVA  156 (233)
T ss_dssp             --EEEECCC
T ss_pred             --EEEEcCC
Confidence              5888876

>2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E

Probab=98.94  E-value=3.8e-09  Score=94.44  Aligned_cols=80  Identities=21%  Similarity=0.287  Sum_probs=66.0

Q ss_pred             CCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHh--------CCCcEEEEeccCCC-CC--CC
Q 019802          239 PKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLS--------GAANIEVLHGDFLN-LD--PK  307 (335)
Q Consensus       239 ~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~--------g~~ni~~~~~D~~~-~~--~~  307 (335)
                      +.++.+|||+|||+|+.+.+++... +.+.|+++|+|+.+++.++++++..        |+.|+.++++|+.+ ++  ..
T Consensus        47 ~~~~~~vLDiGcG~G~~~~~la~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~nv~~~~~D~~~~l~~~~~  125 (246)
T 2vdv_E           47 MTKKVTIADIGCGFGGLMIDLSPAF-PEDLILGMEIRVQVTNYVEDRIIALRNNTASKHGFQNINVLRGNAMKFLPNFFE  125 (246)
T ss_dssp             BSCCEEEEEETCTTSHHHHHHHHHS-TTSEEEEEESCHHHHHHHHHHHHHHHHTC-CCSTTTTEEEEECCTTSCGGGTSC
T ss_pred             CCCCCEEEEEcCCCCHHHHHHHHhC-CCCCEEEEEcCHHHHHHHHHHHHHHhhccccccCCCcEEEEeccHHHHHHHhcc
Confidence            3568899999999999999999885 4579999999999999999999987        88899999999987 44  33


Q ss_pred             CCCCceEEEEEEecc
Q 019802          308 DPAYSEVSLIFCIFT  322 (335)
Q Consensus       308 ~~~fd~V~~IllD~~  322 (335)
                      ..+||.   |++.+|
T Consensus       126 ~~~~d~---v~~~~p  137 (246)
T 2vdv_E          126 KGQLSK---MFFCFP  137 (246)
T ss_dssp             TTCEEE---EEEESC
T ss_pred             ccccCE---EEEECC
Confidence            445554   555443

>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A*

Probab=98.94  E-value=4.5e-09  Score=94.78  Aligned_cols=74  Identities=14%  Similarity=0.178  Sum_probs=66.2

Q ss_pred             CCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCC-cEEEEeccCCCCCCCCCCCceE
Q 019802          239 PKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAA-NIEVLHGDFLNLDPKDPAYSEV  314 (335)
Q Consensus       239 ~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~-ni~~~~~D~~~~~~~~~~fd~V  314 (335)
                      +.++.+|||+|||+|..+..+++.  +.++|+++|+|+.+++.++++++..|+. +++++++|+.+++..+++||.|
T Consensus        44 ~~~~~~vLDiGcG~G~~~~~la~~--~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~i  118 (267)
T 3kkz_A           44 LTEKSLIADIGCGTGGQTMVLAGH--VTGQVTGLDFLSGFIDIFNRNARQSGLQNRVTGIVGSMDDLPFRNEELDLI  118 (267)
T ss_dssp             CCTTCEEEEETCTTCHHHHHHHTT--CSSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCCCTTCEEEE
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHhc--cCCEEEEEeCCHHHHHHHHHHHHHcCCCcCcEEEEcChhhCCCCCCCEEEE
Confidence            578999999999999999999987  4579999999999999999999999985 4999999999988777778763

>3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str}

Probab=98.94  E-value=4.3e-09  Score=94.18  Aligned_cols=75  Identities=16%  Similarity=0.140  Sum_probs=65.0

Q ss_pred             CCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCc-EEEEeccCCCCCCCCCCCceE
Q 019802          239 PKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAAN-IEVLHGDFLNLDPKDPAYSEV  314 (335)
Q Consensus       239 ~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~n-i~~~~~D~~~~~~~~~~fd~V  314 (335)
                      +.+|++|||+|||+|..+..++.. ++..+|+|+|+++..++.+++|+++.|+.+ |++.++|+.+...++..||.|
T Consensus        19 v~~g~~VlDIGtGsG~l~i~la~~-~~~~~V~avDi~~~al~~A~~N~~~~gl~~~I~v~~gD~l~~~~~~~~~D~I   94 (244)
T 3gnl_A           19 ITKNERIADIGSDHAYLPCFAVKN-QTASFAIAGEVVDGPFQSAQKQVRSSGLTEQIDVRKGNGLAVIEKKDAIDTI   94 (244)
T ss_dssp             CCSSEEEEEETCSTTHHHHHHHHT-TSEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGGGCCCEE
T ss_pred             CCCCCEEEEECCccHHHHHHHHHh-CCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEecchhhccCccccccEE
Confidence            467899999999999999999986 456799999999999999999999999976 999999998866544458853

>4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp}

Probab=98.94  E-value=1.1e-10  Score=101.00  Aligned_cols=82  Identities=15%  Similarity=0.146  Sum_probs=51.8

Q ss_pred             CCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCC-----CCCceE
Q 019802          240 KPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKD-----PAYSEV  314 (335)
Q Consensus       240 ~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~~~~-----~~fd~V  314 (335)
                      .++.+|||+|||+|..+.+++... +..+++++|+++.+++.+++++...|. +++++++|+.+ +..+     .+||. 
T Consensus        29 ~~~~~vLDiG~G~G~~~~~l~~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~-~~~~~~~d~~~-~~~~~~~~~~~fD~-  104 (215)
T 4dzr_A           29 PSGTRVIDVGTGSGCIAVSIALAC-PGVSVTAVDLSMDALAVARRNAERFGA-VVDWAAADGIE-WLIERAERGRPWHA-  104 (215)
T ss_dssp             CTTEEEEEEESSBCHHHHHHHHHC-TTEEEEEEECC--------------------CCHHHHHH-HHHHHHHTTCCBSE-
T ss_pred             CCCCEEEEecCCHhHHHHHHHHhC-CCCeEEEEECCHHHHHHHHHHHHHhCC-ceEEEEcchHh-hhhhhhhccCcccE-
Confidence            688999999999999999999985 457999999999999999999999988 89999999987 3333     66875 


Q ss_pred             EEEEEeccccccc
Q 019802          315 SLIFCIFTWMIIM  327 (335)
Q Consensus       315 ~~IllD~~cs~~g  327 (335)
                        |++|+|+...+
T Consensus       105 --i~~npp~~~~~  115 (215)
T 4dzr_A          105 --IVSNPPYIPTG  115 (215)
T ss_dssp             --EEECCCCCC--
T ss_pred             --EEECCCCCCCc
Confidence              88999986554

>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes}

Probab=98.94  E-value=6.6e-09  Score=93.76  Aligned_cols=83  Identities=20%  Similarity=0.318  Sum_probs=72.2

Q ss_pred             HHHHHHHcCCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCC-cEEEEeccCCCCCCCC
Q 019802          230 SSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAA-NIEVLHGDFLNLDPKD  308 (335)
Q Consensus       230 s~l~~~~l~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~-ni~~~~~D~~~~~~~~  308 (335)
                      ...+...+.+.++.+|||+|||+|..+..+++..  ..+|+++|+|+.+++.+++++...|+. ++.++++|+.+++..+
T Consensus        50 ~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~  127 (273)
T 3bus_A           50 TDEMIALLDVRSGDRVLDVGCGIGKPAVRLATAR--DVRVTGISISRPQVNQANARATAAGLANRVTFSYADAMDLPFED  127 (273)
T ss_dssp             HHHHHHHSCCCTTCEEEEESCTTSHHHHHHHHHS--CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCSCT
T ss_pred             HHHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHhc--CCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECccccCCCCC
Confidence            3445556778899999999999999999999875  479999999999999999999999985 6999999999988777


Q ss_pred             CCCceE
Q 019802          309 PAYSEV  314 (335)
Q Consensus       309 ~~fd~V  314 (335)
                      ++||.|
T Consensus       128 ~~fD~v  133 (273)
T 3bus_A          128 ASFDAV  133 (273)
T ss_dssp             TCEEEE
T ss_pred             CCccEE
Confidence            788864

>3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli}

Probab=98.94  E-value=1.3e-09  Score=103.67  Aligned_cols=86  Identities=15%  Similarity=0.141  Sum_probs=68.9

Q ss_pred             HcCCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCC--CC-CCC-
Q 019802          236 ALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDP--KD-PAY-  311 (335)
Q Consensus       236 ~l~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~~--~~-~~f-  311 (335)
                      .++.. +++|||+|||+|..+..+|..   ..+|+++|+++.+++.+++|++..|++|++++++|+.++..  .. ..| 
T Consensus       209 ~~~~~-~~~vLDl~cG~G~~~l~la~~---~~~V~gvd~~~~ai~~a~~n~~~ng~~~v~~~~~d~~~~~~~~~~~~~~~  284 (369)
T 3bt7_A          209 VTKGS-KGDLLELYCGNGNFSLALARN---FDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFN  284 (369)
T ss_dssp             HTTTC-CSEEEEESCTTSHHHHHHGGG---SSEEEEECCCHHHHHHHHHHHHHTTCCSEEEECCCSHHHHHHHSSCCCCT
T ss_pred             HhhcC-CCEEEEccCCCCHHHHHHHhc---CCEEEEEECCHHHHHHHHHHHHHcCCCceEEEECCHHHHHHHHhhccccc
Confidence            34443 688999999999999998864   36899999999999999999999999999999999977532  11 111 


Q ss_pred             ---------ceEEEEEEeccccc
Q 019802          312 ---------SEVSLIFCIFTWMI  325 (335)
Q Consensus       312 ---------d~V~~IllD~~cs~  325 (335)
                               ..+|.|++|||..|
T Consensus       285 ~l~~~~~~~~~fD~Vv~dPPr~g  307 (369)
T 3bt7_A          285 RLQGIDLKSYQCETIFVDPPRSG  307 (369)
T ss_dssp             TGGGSCGGGCCEEEEEECCCTTC
T ss_pred             cccccccccCCCCEEEECcCccc
Confidence                     13567999999875

>3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae}

Probab=98.94  E-value=3.8e-09  Score=93.75  Aligned_cols=74  Identities=15%  Similarity=0.085  Sum_probs=64.9

Q ss_pred             CCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCc-EEEEeccCCCCCCCCCCCce
Q 019802          239 PKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAAN-IEVLHGDFLNLDPKDPAYSE  313 (335)
Q Consensus       239 ~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~n-i~~~~~D~~~~~~~~~~fd~  313 (335)
                      +++|++|||+|||+|..+..++.. ++..+|+|+|+++..++.+++|+++.|+.+ |++.++|+.+...++..||.
T Consensus        19 v~~g~~VlDIGtGsG~l~i~la~~-~~~~~V~AvDi~~~al~~A~~N~~~~gl~~~I~~~~gD~l~~~~~~~~~D~   93 (230)
T 3lec_A           19 VPKGARLLDVGSDHAYLPIFLLQM-GYCDFAIAGEVVNGPYQSALKNVSEHGLTSKIDVRLANGLSAFEEADNIDT   93 (230)
T ss_dssp             SCTTEEEEEETCSTTHHHHHHHHT-TCEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGGGCCCE
T ss_pred             CCCCCEEEEECCchHHHHHHHHHh-CCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhccccccccCE
Confidence            467899999999999999999986 456799999999999999999999999975 99999999887655446885

>3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A*

Probab=98.93  E-value=5.6e-09  Score=96.01  Aligned_cols=80  Identities=16%  Similarity=0.191  Sum_probs=70.0

Q ss_pred             HHHHHcCCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCC-cEEEEeccCCCCCCCCCC
Q 019802          232 MVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAA-NIEVLHGDFLNLDPKDPA  310 (335)
Q Consensus       232 l~~~~l~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~-ni~~~~~D~~~~~~~~~~  310 (335)
                      .+...+.+++|.+|||+|||+|..+..+++..+  .+|+++|+|+.+++.+++++...|+. ++++.++|+.++   +++
T Consensus        63 ~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~--~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~---~~~  137 (302)
T 3hem_A           63 LALDKLNLEPGMTLLDIGCGWGSTMRHAVAEYD--VNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWEEF---DEP  137 (302)
T ss_dssp             HHHHTTCCCTTCEEEEETCTTSHHHHHHHHHHC--CEEEEEECCHHHHHHHHHHHHHSCCSSCEEEEECCGGGC---CCC
T ss_pred             HHHHHcCCCCcCEEEEeeccCcHHHHHHHHhCC--CEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECCHHHc---CCC
Confidence            345566788999999999999999999999864  68999999999999999999999986 799999999887   567


Q ss_pred             CceEEE
Q 019802          311 YSEVSL  316 (335)
Q Consensus       311 fd~V~~  316 (335)
                      ||.|.+
T Consensus       138 fD~v~~  143 (302)
T 3hem_A          138 VDRIVS  143 (302)
T ss_dssp             CSEEEE
T ss_pred             ccEEEE
Confidence            997543

>2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A*

Probab=98.93  E-value=6.9e-09  Score=88.73  Aligned_cols=80  Identities=23%  Similarity=0.174  Sum_probs=69.5

Q ss_pred             HHHHHHcCCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCC
Q 019802          231 SMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPA  310 (335)
Q Consensus       231 ~l~~~~l~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~~~~~~  310 (335)
                      ..+...+...++.+|||+|||+|..+..+++.   ..+++++|+++.+++.++++++..++.++.+.++|+.+++. +.+
T Consensus        22 ~~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~-~~~   97 (199)
T 2xvm_A           22 SEVLEAVKVVKPGKTLDLGCGNGRNSLYLAAN---GYDVDAWDKNAMSIANVERIKSIENLDNLHTRVVDLNNLTF-DRQ   97 (199)
T ss_dssp             HHHHHHTTTSCSCEEEEETCTTSHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHHTCTTEEEEECCGGGCCC-CCC
T ss_pred             HHHHHHhhccCCCeEEEEcCCCCHHHHHHHHC---CCeEEEEECCHHHHHHHHHHHHhCCCCCcEEEEcchhhCCC-CCC
Confidence            34556677778899999999999999999986   36999999999999999999999999889999999999876 666


Q ss_pred             CceE
Q 019802          311 YSEV  314 (335)
Q Consensus       311 fd~V  314 (335)
                      ||.|
T Consensus        98 ~D~v  101 (199)
T 2xvm_A           98 YDFI  101 (199)
T ss_dssp             EEEE
T ss_pred             ceEE
Confidence            7753

>2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus}

Probab=98.92  E-value=9.5e-09  Score=91.26  Aligned_cols=88  Identities=17%  Similarity=0.220  Sum_probs=74.2

Q ss_pred             hHHHHHHHcCCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCC-CcEEEEeccCCCCCCC
Q 019802          229 ASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGA-ANIEVLHGDFLNLDPK  307 (335)
Q Consensus       229 ~s~l~~~~l~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~-~ni~~~~~D~~~~~~~  307 (335)
                      ....+...+++.+|++|||+|||+|..+..++..   .++|+++|+++.+++.++++++..|+ .++.+.++|+.+....
T Consensus        79 ~~~~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~---~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~  155 (248)
T 2yvl_A           79 DSFYIALKLNLNKEKRVLEFGTGSGALLAVLSEV---AGEVWTFEAVEEFYKTAQKNLKKFNLGKNVKFFNVDFKDAEVP  155 (248)
T ss_dssp             HHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHH---SSEEEEECSCHHHHHHHHHHHHHTTCCTTEEEECSCTTTSCCC
T ss_pred             hHHHHHHhcCCCCCCEEEEeCCCccHHHHHHHHh---CCEEEEEecCHHHHHHHHHHHHHcCCCCcEEEEEcChhhcccC
Confidence            3445566677889999999999999999999988   47999999999999999999999998 6899999999886534


Q ss_pred             CCCCceEEEEEEecc
Q 019802          308 DPAYSEVSLIFCIFT  322 (335)
Q Consensus       308 ~~~fd~V~~IllD~~  322 (335)
                      +..||.   |++|++
T Consensus       156 ~~~~D~---v~~~~~  167 (248)
T 2yvl_A          156 EGIFHA---AFVDVR  167 (248)
T ss_dssp             TTCBSE---EEECSS
T ss_pred             CCcccE---EEECCc
Confidence            456875   667765

>3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A*

Probab=98.92  E-value=1.1e-09  Score=97.00  Aligned_cols=83  Identities=12%  Similarity=0.048  Sum_probs=69.8

Q ss_pred             CCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCC-HHHHHHH---HHHHHHhCCCcEEEEeccCCCCCCCCCCCceE
Q 019802          239 PKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELN-KERVRRL---KDTIKLSGAANIEVLHGDFLNLDPKDPAYSEV  314 (335)
Q Consensus       239 ~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~-~~rl~~~---~~~~~~~g~~ni~~~~~D~~~~~~~~~~fd~V  314 (335)
                      .+++++|||+|||+|..+..++.. .+..+|+++|+| +.+++.+   ++++++.|+.|+.+.++|+..++.  ..||.|
T Consensus        22 ~~~~~~vLDiGCG~G~~~~~la~~-~~~~~v~GvD~s~~~ml~~A~~A~~~~~~~~~~~v~~~~~d~~~l~~--~~~d~v   98 (225)
T 3p2e_A           22 GQFDRVHIDLGTGDGRNIYKLAIN-DQNTFYIGIDPVKENLFDISKKIIKKPSKGGLSNVVFVIAAAESLPF--ELKNIA   98 (225)
T ss_dssp             TTCSEEEEEETCTTSHHHHHHHHT-CTTEEEEEECSCCGGGHHHHHHHTSCGGGTCCSSEEEECCBTTBCCG--GGTTCE
T ss_pred             CCCCCEEEEEeccCcHHHHHHHHh-CCCCEEEEEeCCHHHHHHHHHHHHHHHHHcCCCCeEEEEcCHHHhhh--hccCeE
Confidence            367899999999999999999876 356899999999 6666666   888888899999999999999853  335889


Q ss_pred             EEEEEecccc
Q 019802          315 SLIFCIFTWM  324 (335)
Q Consensus       315 ~~IllD~~cs  324 (335)
                      ++|.+.+|+.
T Consensus        99 ~~i~~~~~~~  108 (225)
T 3p2e_A           99 DSISILFPWG  108 (225)
T ss_dssp             EEEEEESCCH
T ss_pred             EEEEEeCCCc
Confidence            9999987754

>1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A

Probab=98.92  E-value=5.7e-09  Score=92.25  Aligned_cols=79  Identities=23%  Similarity=0.243  Sum_probs=65.5

Q ss_pred             cCCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCC----CCCCCCCCc
Q 019802          237 LAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLN----LDPKDPAYS  312 (335)
Q Consensus       237 l~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~----~~~~~~~fd  312 (335)
                      +.+.++.+|||+|||+|..+.+++...+ .++|+++|+++.+++.++++++..  .|+.++++|+..    .+.. .+||
T Consensus        70 ~~~~~~~~VLDlGcG~G~~~~~la~~~~-~~~v~gvD~s~~~~~~a~~~~~~~--~~v~~~~~d~~~~~~~~~~~-~~~D  145 (230)
T 1fbn_A           70 MPIKRDSKILYLGASAGTTPSHVADIAD-KGIVYAIEYAPRIMRELLDACAER--ENIIPILGDANKPQEYANIV-EKVD  145 (230)
T ss_dssp             CCCCTTCEEEEESCCSSHHHHHHHHHTT-TSEEEEEESCHHHHHHHHHHTTTC--TTEEEEECCTTCGGGGTTTS-CCEE
T ss_pred             cCCCCCCEEEEEcccCCHHHHHHHHHcC-CcEEEEEECCHHHHHHHHHHhhcC--CCeEEEECCCCCcccccccC-ccEE
Confidence            3456899999999999999999999875 689999999999999999998765  689999999988    5443 4455


Q ss_pred             eEEEEEEecc
Q 019802          313 EVSLIFCIFT  322 (335)
Q Consensus       313 ~V~~IllD~~  322 (335)
                         .|+.|++
T Consensus       146 ---~v~~~~~  152 (230)
T 1fbn_A          146 ---VIYEDVA  152 (230)
T ss_dssp             ---EEEECCC
T ss_pred             ---EEEEecC
Confidence               4666654

>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis}

Probab=98.92  E-value=7.2e-09  Score=89.76  Aligned_cols=81  Identities=20%  Similarity=0.246  Sum_probs=69.3

Q ss_pred             HHHHHHcCCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCC-cEEEEeccCCCCCCCCC
Q 019802          231 SMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAA-NIEVLHGDFLNLDPKDP  309 (335)
Q Consensus       231 ~l~~~~l~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~-ni~~~~~D~~~~~~~~~  309 (335)
                      ..+...+...++ +|||+|||+|..+..+++.  +..+|+++|+++.+++.++++++..|+. ++.++++|+.+++..++
T Consensus        34 ~~~~~~~~~~~~-~vLdiG~G~G~~~~~l~~~--~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~  110 (219)
T 3dlc_A           34 ENIINRFGITAG-TCIDIGSGPGALSIALAKQ--SDFSIRALDFSKHMNEIALKNIADANLNDRIQIVQGDVHNIPIEDN  110 (219)
T ss_dssp             HHHHHHHCCCEE-EEEEETCTTSHHHHHHHHH--SEEEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECBTTBCSSCTT
T ss_pred             HHHHHhcCCCCC-EEEEECCCCCHHHHHHHHc--CCCeEEEEECCHHHHHHHHHHHHhccccCceEEEEcCHHHCCCCcc
Confidence            334445666667 9999999999999999987  4579999999999999999999999985 79999999999887777


Q ss_pred             CCceE
Q 019802          310 AYSEV  314 (335)
Q Consensus       310 ~fd~V  314 (335)
                      +||.|
T Consensus       111 ~~D~v  115 (219)
T 3dlc_A          111 YADLI  115 (219)
T ss_dssp             CEEEE
T ss_pred             cccEE
Confidence            78763

>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei}

Probab=98.90  E-value=7.6e-09  Score=93.57  Aligned_cols=82  Identities=22%  Similarity=0.394  Sum_probs=71.4

Q ss_pred             HHHHHcCCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCC
Q 019802          232 MVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAY  311 (335)
Q Consensus       232 l~~~~l~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~~~~~~f  311 (335)
                      ++.......++.+|||+|||+|..+..+++.. +.++|+++|+++.+++.+++++...|+.++.++++|+.+++..+.+|
T Consensus        28 ~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~f  106 (276)
T 3mgg_A           28 LLHHDTVYPPGAKVLEAGCGIGAQTVILAKNN-PDAEITSIDISPESLEKARENTEKNGIKNVKFLQANIFSLPFEDSSF  106 (276)
T ss_dssp             HHHTTCCCCTTCEEEETTCTTSHHHHHHHHHC-TTSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGCCSCTTCE
T ss_pred             HHhhcccCCCCCeEEEecCCCCHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEcccccCCCCCCCe
Confidence            33334456789999999999999999999984 45799999999999999999999999999999999999988777788


Q ss_pred             ceE
Q 019802          312 SEV  314 (335)
Q Consensus       312 d~V  314 (335)
                      |.|
T Consensus       107 D~v  109 (276)
T 3mgg_A          107 DHI  109 (276)
T ss_dssp             EEE
T ss_pred             eEE
Confidence            864

>1wg8_A Predicted S-adenosylmethionine-dependent methyltransferase; S-adenosyl-methyltransferase, MRAW; HET: SAM; 2.00A {Thermus thermophilus} SCOP: a.60.13.1 c.66.1.23

Probab=98.90  E-value=1.4e-09  Score=98.72  Aligned_cols=87  Identities=21%  Similarity=0.277  Sum_probs=74.0

Q ss_pred             HHHHHcCCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCC--CCC
Q 019802          232 MVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDP--KDP  309 (335)
Q Consensus       232 l~~~~l~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~~--~~~  309 (335)
                      -+...+++++|+.+||++||.||.|..|++.   +|+|+|+|.++..++.+++ ++.   .++.++++++.+++.  ...
T Consensus        13 e~le~L~~~~gg~~VD~T~G~GGHS~~il~~---~g~VigiD~Dp~Ai~~A~~-L~~---~rv~lv~~~f~~l~~~L~~~   85 (285)
T 1wg8_A           13 EALDLLAVRPGGVYVDATLGGAGHARGILER---GGRVIGLDQDPEAVARAKG-LHL---PGLTVVQGNFRHLKRHLAAL   85 (285)
T ss_dssp             HHHHHHTCCTTCEEEETTCTTSHHHHHHHHT---TCEEEEEESCHHHHHHHHH-TCC---TTEEEEESCGGGHHHHHHHT
T ss_pred             HHHHhhCCCCCCEEEEeCCCCcHHHHHHHHC---CCEEEEEeCCHHHHHHHHh-hcc---CCEEEEECCcchHHHHHHHc
Confidence            3556788999999999999999999999987   5899999999999999998 654   589999999998863  122


Q ss_pred             CCceEEEEEEeccccc
Q 019802          310 AYSEVSLIFCIFTWMI  325 (335)
Q Consensus       310 ~fd~V~~IllD~~cs~  325 (335)
                      ..+.||+|++|+++|.
T Consensus        86 g~~~vDgIL~DLGvSS  101 (285)
T 1wg8_A           86 GVERVDGILADLGVSS  101 (285)
T ss_dssp             TCSCEEEEEEECSCCH
T ss_pred             CCCCcCEEEeCCcccc
Confidence            2457889999999997

>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18

Probab=98.90  E-value=1e-08  Score=93.84  Aligned_cols=84  Identities=21%  Similarity=0.220  Sum_probs=72.1

Q ss_pred             HHHHHHHc----CCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCC-CcEEEEeccCCCC
Q 019802          230 SSMVAAAL----APKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGA-ANIEVLHGDFLNL  304 (335)
Q Consensus       230 s~l~~~~l----~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~-~ni~~~~~D~~~~  304 (335)
                      ...+...+    ...++.+|||+|||+|..+..+++..+  .+|+++|+++.+++.++++++..|+ .++.++++|+.++
T Consensus        67 ~~~l~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~--~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~  144 (297)
T 2o57_A           67 DEWLASELAMTGVLQRQAKGLDLGAGYGGAARFLVRKFG--VSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEI  144 (297)
T ss_dssp             HHHHHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHHHC--CEEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTSC
T ss_pred             HHHHHHHhhhccCCCCCCEEEEeCCCCCHHHHHHHHHhC--CEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEEcCcccC
Confidence            34445556    778899999999999999999998763  5999999999999999999999998 4699999999999


Q ss_pred             CCCCCCCceEE
Q 019802          305 DPKDPAYSEVS  315 (335)
Q Consensus       305 ~~~~~~fd~V~  315 (335)
                      +..+++||.|.
T Consensus       145 ~~~~~~fD~v~  155 (297)
T 2o57_A          145 PCEDNSYDFIW  155 (297)
T ss_dssp             SSCTTCEEEEE
T ss_pred             CCCCCCEeEEE
Confidence            87777888643

>3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei}

Probab=98.89  E-value=4.2e-09  Score=95.17  Aligned_cols=87  Identities=16%  Similarity=0.176  Sum_probs=72.1

Q ss_pred             chHHHHHHHcCCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHH------HHHHHHHHHHHhCC-CcEEEEecc
Q 019802          228 KASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKE------RVRRLKDTIKLSGA-ANIEVLHGD  300 (335)
Q Consensus       228 ~~s~l~~~~l~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~------rl~~~~~~~~~~g~-~ni~~~~~D  300 (335)
                      .....+...+.+.++.+|||+|||+|..+.+++...++.++|+++|+|+.      +++.++++++..|+ .++++.++|
T Consensus        30 ~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~g~~~~v~gvD~s~~~~~~~~~~~~a~~~~~~~~~~~~v~~~~~d  109 (275)
T 3bkx_A           30 AHRLAIAEAWQVKPGEKILEIGCGQGDLSAVLADQVGSSGHVTGIDIASPDYGAPLTLGQAWNHLLAGPLGDRLTVHFNT  109 (275)
T ss_dssp             HHHHHHHHHHTCCTTCEEEEESCTTSHHHHHHHHHHCTTCEEEEECSSCTTCCSSSCHHHHHHHHHTSTTGGGEEEECSC
T ss_pred             HHHHHHHHHcCCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEECCccccccHHHHHHHHHHHHhcCCCCceEEEECC
Confidence            33444555677889999999999999999999998766689999999997      99999999998887 579999998


Q ss_pred             ---CCCCCCCCCCCceE
Q 019802          301 ---FLNLDPKDPAYSEV  314 (335)
Q Consensus       301 ---~~~~~~~~~~fd~V  314 (335)
                         ...++..+++||.|
T Consensus       110 ~~~~~~~~~~~~~fD~v  126 (275)
T 3bkx_A          110 NLSDDLGPIADQHFDRV  126 (275)
T ss_dssp             CTTTCCGGGTTCCCSEE
T ss_pred             hhhhccCCCCCCCEEEE
Confidence               44555556789974

>3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp}

Probab=98.89  E-value=9.2e-09  Score=88.93  Aligned_cols=86  Identities=16%  Similarity=0.235  Sum_probs=69.4

Q ss_pred             HHHHHHcC--CCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCC
Q 019802          231 SMVAAALA--PKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKD  308 (335)
Q Consensus       231 ~l~~~~l~--~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~~~~  308 (335)
                      ..+...+.  +.++.+|||+|||+|..+..++..  +..+|+++|+++.+++.+++++...|+.++++.++|+.+..  .
T Consensus        48 ~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~l~~~--~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~--~  123 (205)
T 3grz_A           48 QLAMLGIERAMVKPLTVADVGTGSGILAIAAHKL--GAKSVLATDISDESMTAAEENAALNGIYDIALQKTSLLADV--D  123 (205)
T ss_dssp             HHHHHHHHHHCSSCCEEEEETCTTSHHHHHHHHT--TCSEEEEEESCHHHHHHHHHHHHHTTCCCCEEEESSTTTTC--C
T ss_pred             HHHHHHHHHhccCCCEEEEECCCCCHHHHHHHHC--CCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEeccccccC--C
Confidence            33444443  568999999999999999998874  44699999999999999999999999988999999997754  3


Q ss_pred             CCCceEEEEEEeccc
Q 019802          309 PAYSEVSLIFCIFTW  323 (335)
Q Consensus       309 ~~fd~V~~IllD~~c  323 (335)
                      .+||   .|+++++.
T Consensus       124 ~~fD---~i~~~~~~  135 (205)
T 3grz_A          124 GKFD---LIVANILA  135 (205)
T ss_dssp             SCEE---EEEEESCH
T ss_pred             CCce---EEEECCcH
Confidence            4566   47776543

>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A

Probab=98.89  E-value=5.4e-09  Score=91.24  Aligned_cols=83  Identities=16%  Similarity=0.176  Sum_probs=69.7

Q ss_pred             HHHHHcCCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCC-----cEEEEeccCCCCCC
Q 019802          232 MVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAA-----NIEVLHGDFLNLDP  306 (335)
Q Consensus       232 l~~~~l~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~-----ni~~~~~D~~~~~~  306 (335)
                      .+...+...++.+|||+|||+|..+..+++.. +..+|+++|+|+.+++.+++++...++.     ++.++++|+...+.
T Consensus        20 ~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~   98 (217)
T 3jwh_A           20 GVVAALKQSNARRVIDLGCGQGNLLKILLKDS-FFEQITGVDVSYRSLEIAQERLDRLRLPRNQWERLQLIQGALTYQDK   98 (217)
T ss_dssp             HHHHHHHHTTCCEEEEETCTTCHHHHHHHHCT-TCSEEEEEESCHHHHHHHHHHHTTCCCCHHHHTTEEEEECCTTSCCG
T ss_pred             HHHHHHHhcCCCEEEEeCCCCCHHHHHHHhhC-CCCEEEEEECCHHHHHHHHHHHHHhcCCcccCcceEEEeCCcccccc
Confidence            44555566788999999999999999998863 3469999999999999999999888876     79999999987776


Q ss_pred             CCCCCceEE
Q 019802          307 KDPAYSEVS  315 (335)
Q Consensus       307 ~~~~fd~V~  315 (335)
                      ..++||.|.
T Consensus        99 ~~~~fD~v~  107 (217)
T 3jwh_A           99 RFHGYDAAT  107 (217)
T ss_dssp             GGCSCSEEE
T ss_pred             cCCCcCEEe
Confidence            667899743

>3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A*

Probab=98.89  E-value=8e-09  Score=91.40  Aligned_cols=74  Identities=16%  Similarity=0.082  Sum_probs=62.4

Q ss_pred             CCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCc-EEEEeccCCCCCCCCCCCce
Q 019802          239 PKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAAN-IEVLHGDFLNLDPKDPAYSE  313 (335)
Q Consensus       239 ~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~n-i~~~~~D~~~~~~~~~~fd~  313 (335)
                      +++|++|||+|||+|..+..++.. ++.++|+|+|+++..++.+++|+++.|+.+ |++.++|+.+.-+....||.
T Consensus        13 v~~g~~VlDIGtGsG~l~i~la~~-~~~~~V~avDi~~~al~~A~~N~~~~gl~~~i~~~~~d~l~~l~~~~~~D~   87 (225)
T 3kr9_A           13 VSQGAILLDVGSDHAYLPIELVER-GQIKSAIAGEVVEGPYQSAVKNVEAHGLKEKIQVRLANGLAAFEETDQVSV   87 (225)
T ss_dssp             SCTTEEEEEETCSTTHHHHHHHHT-TSEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGGGCCCE
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHh-CCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEECchhhhcccCcCCCE
Confidence            457899999999999999999986 456799999999999999999999999975 99999999653222224875

>3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP}

Probab=98.88  E-value=1.7e-09  Score=94.57  Aligned_cols=79  Identities=20%  Similarity=0.222  Sum_probs=64.5

Q ss_pred             HHcCCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHH----HHHhCCCcEEEEeccCCCCCCCCCC
Q 019802          235 AALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDT----IKLSGAANIEVLHGDFLNLDPKDPA  310 (335)
Q Consensus       235 ~~l~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~----~~~~g~~ni~~~~~D~~~~~~~~~~  310 (335)
                      ..+.+.++.+|||+|||+|..+..+++.. +.++|+++|+|+.+++.+.++    ....++++++++++|+.+++..+..
T Consensus        21 ~~l~~~~~~~vLDiGcG~G~~~~~la~~~-p~~~v~gvD~s~~~l~~~~~~a~~~~~~~~~~~v~~~~~d~~~l~~~~~~   99 (218)
T 3mq2_A           21 EQLRSQYDDVVLDVGTGDGKHPYKVARQN-PSRLVVALDADKSRMEKISAKAAAKPAKGGLPNLLYLWATAERLPPLSGV   99 (218)
T ss_dssp             HHHHTTSSEEEEEESCTTCHHHHHHHHHC-TTEEEEEEESCGGGGHHHHHHHTSCGGGTCCTTEEEEECCSTTCCSCCCE
T ss_pred             HHhhccCCCEEEEecCCCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHhhhhcCCCceEEEecchhhCCCCCCC
Confidence            34567889999999999999999999974 468999999999999875443    3356778999999999998876555


Q ss_pred             CceEE
Q 019802          311 YSEVS  315 (335)
Q Consensus       311 fd~V~  315 (335)
                       |.|+
T Consensus       100 -d~v~  103 (218)
T 3mq2_A          100 -GELH  103 (218)
T ss_dssp             -EEEE
T ss_pred             -CEEE
Confidence             6554

>2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1

Probab=98.88  E-value=9.1e-10  Score=96.92  Aligned_cols=95  Identities=15%  Similarity=0.185  Sum_probs=75.3

Q ss_pred             ecCchHHHHHHHcCCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCC-CcEEEEeccCCC
Q 019802          225 LQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGA-ANIEVLHGDFLN  303 (335)
Q Consensus       225 iQd~~s~l~~~~l~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~-~ni~~~~~D~~~  303 (335)
                      +.....+++..++...++.+|||+|||+|..+..+++.+++.++|+++|+++.+++.++++++..|+ .+++++++|+.+
T Consensus        53 ~~~~~~~~l~~l~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~  132 (229)
T 2avd_A           53 MTCEQAQLLANLARLIQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALE  132 (229)
T ss_dssp             CCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHH
T ss_pred             cCHHHHHHHHHHHHhcCCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCeEEEEEcCHHH
Confidence            3344455555556667789999999999999999998876578999999999999999999999998 579999999865


Q ss_pred             CCCC----C--CCCceEEEEEEecc
Q 019802          304 LDPK----D--PAYSEVSLIFCIFT  322 (335)
Q Consensus       304 ~~~~----~--~~fd~V~~IllD~~  322 (335)
                      ..+.    .  .+||   .|++|++
T Consensus       133 ~~~~~~~~~~~~~~D---~v~~d~~  154 (229)
T 2avd_A          133 TLDELLAAGEAGTFD---VAVVDAD  154 (229)
T ss_dssp             HHHHHHHTTCTTCEE---EEEECSC
T ss_pred             HHHHHHhcCCCCCcc---EEEECCC
Confidence            4211    1  3454   5888876

>3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0

Probab=98.87  E-value=5.3e-09  Score=94.46  Aligned_cols=93  Identities=14%  Similarity=0.188  Sum_probs=74.6

Q ss_pred             EEecCchHHHHHHHcCCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCC
Q 019802          223 VFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFL  302 (335)
Q Consensus       223 ~~iQd~~s~l~~~~l~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~  302 (335)
                      |.+...-...++..+++.++++|||+|||+|..|..+++.   .++|+|+|+|+.+++.+++++..  ..+++++++|+.
T Consensus        11 FL~d~~i~~~iv~~~~~~~~~~VLEIG~G~G~lt~~La~~---~~~V~avEid~~~~~~~~~~~~~--~~~v~~i~~D~~   85 (255)
T 3tqs_A           11 FLHDSFVLQKIVSAIHPQKTDTLVEIGPGRGALTDYLLTE---CDNLALVEIDRDLVAFLQKKYNQ--QKNITIYQNDAL   85 (255)
T ss_dssp             EECCHHHHHHHHHHHCCCTTCEEEEECCTTTTTHHHHTTT---SSEEEEEECCHHHHHHHHHHHTT--CTTEEEEESCTT
T ss_pred             cccCHHHHHHHHHhcCCCCcCEEEEEcccccHHHHHHHHh---CCEEEEEECCHHHHHHHHHHHhh--CCCcEEEEcchH
Confidence            3333334555677788999999999999999999999876   36999999999999999999875  458999999999


Q ss_pred             CCCCCC----CCCceEEEEEEecccc
Q 019802          303 NLDPKD----PAYSEVSLIFCIFTWM  324 (335)
Q Consensus       303 ~~~~~~----~~fd~V~~IllD~~cs  324 (335)
                      ++++.+    ..|+    |+.++|..
T Consensus        86 ~~~~~~~~~~~~~~----vv~NlPY~  107 (255)
T 3tqs_A           86 QFDFSSVKTDKPLR----VVGNLPYN  107 (255)
T ss_dssp             TCCGGGSCCSSCEE----EEEECCHH
T ss_pred             hCCHHHhccCCCeE----EEecCCcc
Confidence            987643    2343    77788765

>2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46

Probab=98.87  E-value=3.5e-09  Score=89.78  Aligned_cols=80  Identities=19%  Similarity=0.197  Sum_probs=66.6

Q ss_pred             CCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCC-CcEEEEeccCCCCCC----CCCCCce
Q 019802          239 PKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGA-ANIEVLHGDFLNLDP----KDPAYSE  313 (335)
Q Consensus       239 ~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~-~ni~~~~~D~~~~~~----~~~~fd~  313 (335)
                      ..++.+|||+|||+|..+..++..  +..+|+++|+++.+++.++++++..++ .+++++++|+.+...    .+..|| 
T Consensus        42 ~~~~~~vLD~GcG~G~~~~~~~~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~fD-  118 (187)
T 2fhp_A           42 YFDGGMALDLYSGSGGLAIEAVSR--GMDKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRALEQFYEEKLQFD-  118 (187)
T ss_dssp             CCSSCEEEETTCTTCHHHHHHHHT--TCSEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHHTTCCEE-
T ss_pred             hcCCCCEEEeCCccCHHHHHHHHc--CCCEEEEEECCHHHHHHHHHHHHHhCCCcceEEEECcHHHHHHHHHhcCCCCC-
Confidence            457899999999999999998874  347999999999999999999999998 479999999987432    134565 


Q ss_pred             EEEEEEeccc
Q 019802          314 VSLIFCIFTW  323 (335)
Q Consensus       314 V~~IllD~~c  323 (335)
                        .|++|+|.
T Consensus       119 --~i~~~~~~  126 (187)
T 2fhp_A          119 --LVLLDPPY  126 (187)
T ss_dssp             --EEEECCCG
T ss_pred             --EEEECCCC
Confidence              58889874

>3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile}

Probab=98.87  E-value=7.1e-09  Score=99.15  Aligned_cols=105  Identities=19%  Similarity=0.244  Sum_probs=81.7

Q ss_pred             CcccccceEEecCch------HHHHHHHcCCCCCCEEEEEcCCCchHHHHHHHHcCC-----------------------
Q 019802          215 HPLIVNGCVFLQGKA------SSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKG-----------------------  265 (335)
Q Consensus       215 ~~~~~~g~~~iQd~~------s~l~~~~l~~~~g~~VLD~cagpG~kt~~la~~~~~-----------------------  265 (335)
                      .++++.|+...|..+      +..+..+..+.++..|||.|||+|+.++.++....+                       
T Consensus       163 ~~l~krgyr~~~~~Apl~e~lAa~ll~~~~~~~~~~vlDp~CGSGt~lieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~  242 (385)
T 3ldu_A          163 DALHKRGYREKANKAPIRETLAAGLIYLTPWKAGRVLVDPMCGSGTILIEAAMIGINMAPGLNREFISEKWRTLDKKIWW  242 (385)
T ss_dssp             SCTTCCSCCCC--CCCCCHHHHHHHHHTSCCCTTSCEEETTCTTCHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHH
T ss_pred             ChhhhcccccCCCCCCCcHHHHHHHHHhhCCCCCCeEEEcCCCCCHHHHHHHHHHhhhCCCcccccchhhcccCCHHHHH
Confidence            356666666555332      233344567788999999999999999998876432                       


Q ss_pred             --------------CeEEEEEeCCHHHHHHHHHHHHHhCCC-cEEEEeccCCCCCCCCCCCceEEEEEEeccc
Q 019802          266 --------------KGKIVACELNKERVRRLKDTIKLSGAA-NIEVLHGDFLNLDPKDPAYSEVSLIFCIFTW  323 (335)
Q Consensus       266 --------------~g~i~a~D~~~~rl~~~~~~~~~~g~~-ni~~~~~D~~~~~~~~~~fd~V~~IllD~~c  323 (335)
                                    ..+|+++|+++.+++.+++|++..|+. +|++.++|+.++++.. .||   .|++|||.
T Consensus       243 ~~~~~a~~~~~~~~~~~V~GvDid~~ai~~Ar~Na~~~gl~~~i~~~~~D~~~l~~~~-~~D---~Iv~NPPy  311 (385)
T 3ldu_A          243 DVRKDAFNKIDNESKFKIYGYDIDEESIDIARENAEIAGVDEYIEFNVGDATQFKSED-EFG---FIITNPPY  311 (385)
T ss_dssp             HHHHHHHHHSCCSCCCCEEEEESCHHHHHHHHHHHHHHTCGGGEEEEECCGGGCCCSC-BSC---EEEECCCC
T ss_pred             HHHHHHHHHhhccCCceEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhcCcCC-CCc---EEEECCCC
Confidence                          257999999999999999999999996 6999999999987643 576   49999996

>2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A*

Probab=98.87  E-value=9.1e-09  Score=99.62  Aligned_cols=79  Identities=14%  Similarity=0.103  Sum_probs=69.7

Q ss_pred             CCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCceEEEEE
Q 019802          239 PKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVSLIF  318 (335)
Q Consensus       239 ~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~~~~~~fd~V~~Il  318 (335)
                      +.++++|||+|||+|..+..++..   ..+|+++|+++.+++.+++|++..|+. ++++++|+.++.+.  .||.   |+
T Consensus       288 ~~~~~~VLDlgcG~G~~sl~la~~---~~~V~gvD~s~~ai~~A~~n~~~ngl~-v~~~~~d~~~~~~~--~fD~---Vv  358 (425)
T 2jjq_A          288 LVEGEKILDMYSGVGTFGIYLAKR---GFNVKGFDSNEFAIEMARRNVEINNVD-AEFEVASDREVSVK--GFDT---VI  358 (425)
T ss_dssp             HCCSSEEEEETCTTTHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHHTCC-EEEEECCTTTCCCT--TCSE---EE
T ss_pred             cCCCCEEEEeeccchHHHHHHHHc---CCEEEEEECCHHHHHHHHHHHHHcCCc-EEEEECChHHcCcc--CCCE---EE
Confidence            567899999999999999999976   368999999999999999999999998 99999999987643  5774   88


Q ss_pred             Eecccccc
Q 019802          319 CIFTWMII  326 (335)
Q Consensus       319 lD~~cs~~  326 (335)
                      +|||..|.
T Consensus       359 ~dPPr~g~  366 (425)
T 2jjq_A          359 VDPPRAGL  366 (425)
T ss_dssp             ECCCTTCS
T ss_pred             EcCCccch
Confidence            99997654

>3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans}

Probab=98.87  E-value=1e-08  Score=97.94  Aligned_cols=106  Identities=9%  Similarity=0.115  Sum_probs=81.4

Q ss_pred             CcccccceEEecCc------hHHHHHHHcCCCCCCEEEEEcCCCchHHHHHHHHcCC-----------------------
Q 019802          215 HPLIVNGCVFLQGK------ASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKG-----------------------  265 (335)
Q Consensus       215 ~~~~~~g~~~iQd~------~s~l~~~~l~~~~g~~VLD~cagpG~kt~~la~~~~~-----------------------  265 (335)
                      .++++.|+...|..      -+..+..+....++..|||.|||+|+..+.++....+                       
T Consensus       162 ~~LhkRgyr~~~~~Apl~e~LAaall~l~~~~~~~~llDp~CGSGt~lIEAa~~a~~iapg~~R~f~f~~w~~~~~~~w~  241 (384)
T 3ldg_A          162 PSLFKRGYRTEKGGAPIKENMAAAIILLSNWFPDKPFVDPTCGSGTFCIEAAMIGMNIAPGFNRDFAFEEWPWVDEALVT  241 (384)
T ss_dssp             SCTTCCSCCCC---CCCCHHHHHHHHHHTTCCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCGGGGCTTSCHHHHH
T ss_pred             CcccccCcccCCCCCCCcHHHHHHHHHHhCCCCCCeEEEeCCcCCHHHHHHHHHhcCcCCCccccchhhhhccCCHHHHH
Confidence            34556665444433      2333445667888999999999999999988876433                       


Q ss_pred             --------------CeEEEEEeCCHHHHHHHHHHHHHhCCCc-EEEEeccCCCCCCCCCCCceEEEEEEecccc
Q 019802          266 --------------KGKIVACELNKERVRRLKDTIKLSGAAN-IEVLHGDFLNLDPKDPAYSEVSLIFCIFTWM  324 (335)
Q Consensus       266 --------------~g~i~a~D~~~~rl~~~~~~~~~~g~~n-i~~~~~D~~~~~~~~~~fd~V~~IllD~~cs  324 (335)
                                    ..+|+++|+++.+++.+++|++..|+.+ |++.++|+.+++... .||   .|++|||.-
T Consensus       242 ~~~~~a~~~~~~~~~~~v~GvDid~~al~~Ar~Na~~~gl~~~I~~~~~D~~~l~~~~-~fD---~Iv~NPPYG  311 (384)
T 3ldg_A          242 RVRNEADEQADYDIQLDISGFDFDGRMVEIARKNAREVGLEDVVKLKQMRLQDFKTNK-ING---VLISNPPYG  311 (384)
T ss_dssp             HHHHHHHHHCCTTCCCCEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCGGGCCCCC-CSC---EEEECCCCT
T ss_pred             HHHHHHHHhhhccCCceEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChHHCCccC-CcC---EEEECCchh
Confidence                          1569999999999999999999999975 999999999987653 576   499999963

>3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis}

Probab=98.87  E-value=2.6e-09  Score=102.51  Aligned_cols=80  Identities=21%  Similarity=0.185  Sum_probs=67.9

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHh--CCCcEEEEeccCCCCCCC--CCCCceEEE
Q 019802          241 PGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLS--GAANIEVLHGDFLNLDPK--DPAYSEVSL  316 (335)
Q Consensus       241 ~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~--g~~ni~~~~~D~~~~~~~--~~~fd~V~~  316 (335)
                      +|.+|||+|||+|..+.+++..   .++|+++|+|+.+++.+++|++.+  |+.+++++++|+.++...  +..||.   
T Consensus        93 ~g~~VLDLgcG~G~~al~LA~~---g~~V~~VD~s~~~l~~Ar~N~~~~~~gl~~i~~i~~Da~~~L~~~~~~~fDv---  166 (410)
T 3ll7_A           93 EGTKVVDLTGGLGIDFIALMSK---ASQGIYIERNDETAVAARHNIPLLLNEGKDVNILTGDFKEYLPLIKTFHPDY---  166 (410)
T ss_dssp             TTCEEEESSCSSSHHHHHHHTT---CSEEEEEESCHHHHHHHHHHHHHHSCTTCEEEEEESCGGGSHHHHHHHCCSE---
T ss_pred             CCCEEEEeCCCchHHHHHHHhc---CCEEEEEECCHHHHHHHHHhHHHhccCCCcEEEEECcHHHhhhhccCCCceE---
Confidence            5899999999999999998875   369999999999999999999999  998999999999885221  245774   


Q ss_pred             EEEecccccc
Q 019802          317 IFCIFTWMII  326 (335)
Q Consensus       317 IllD~~cs~~  326 (335)
                      |++|||-.+.
T Consensus       167 V~lDPPrr~~  176 (410)
T 3ll7_A          167 IYVDPARRSG  176 (410)
T ss_dssp             EEECCEEC--
T ss_pred             EEECCCCcCC
Confidence            9999998874

>3tka_A Ribosomal RNA small subunit methyltransferase H; HET: SAM CTN PG4; 2.25A {Escherichia coli}

Probab=98.86  E-value=3.1e-09  Score=98.54  Aligned_cols=90  Identities=16%  Similarity=0.244  Sum_probs=74.8

Q ss_pred             HHHHcCCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCC--CCCC
Q 019802          233 VAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDP--KDPA  310 (335)
Q Consensus       233 ~~~~l~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~~--~~~~  310 (335)
                      +...|.++||+.++|+++|.||.|..|++.++++|+|+|+|.++..++.++ ++   .-.+++++++++.++..  ....
T Consensus        49 vl~~L~i~pggiyVD~TlG~GGHS~~iL~~lg~~GrVig~D~Dp~Al~~A~-rL---~~~Rv~lv~~nF~~l~~~L~~~g  124 (347)
T 3tka_A           49 AVNGLNIRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAK-TI---DDPRFSIIHGPFSALGEYVAERD  124 (347)
T ss_dssp             HHHHTCCCTTCEEEESCCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHT-TC---CCTTEEEEESCGGGHHHHHHHTT
T ss_pred             HHHhhCCCCCCEEEEeCcCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHH-hh---cCCcEEEEeCCHHHHHHHHHhcC
Confidence            556788999999999999999999999999888999999999999999884 33   34679999999988753  1112


Q ss_pred             Cc-eEEEEEEecccccc
Q 019802          311 YS-EVSLIFCIFTWMII  326 (335)
Q Consensus       311 fd-~V~~IllD~~cs~~  326 (335)
                      +. .||+|++|.+||.-
T Consensus       125 ~~~~vDgILfDLGVSS~  141 (347)
T 3tka_A          125 LIGKIDGILLDLGVSSP  141 (347)
T ss_dssp             CTTCEEEEEEECSCCHH
T ss_pred             CCCcccEEEECCccCHH
Confidence            33 58899999999963

>1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A

Probab=98.85  E-value=7.4e-09  Score=92.78  Aligned_cols=93  Identities=15%  Similarity=0.217  Sum_probs=75.6

Q ss_pred             EEecCchHHHHHHHcCCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCC
Q 019802          223 VFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFL  302 (335)
Q Consensus       223 ~~iQd~~s~l~~~~l~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~  302 (335)
                      |.++......+...+++.++++|||+|||+|..|..+++..   ++|+++|+|+.+++.++++++.  ..+++++++|+.
T Consensus        12 fl~d~~~~~~i~~~~~~~~~~~VLDiG~G~G~lt~~l~~~~---~~v~~vD~~~~~~~~a~~~~~~--~~~v~~~~~D~~   86 (244)
T 1qam_A           12 FITSKHNIDKIMTNIRLNEHDNIFEIGSGKGHFTLELVQRC---NFVTAIEIDHKLCKTTENKLVD--HDNFQVLNKDIL   86 (244)
T ss_dssp             BCCCHHHHHHHHTTCCCCTTCEEEEECCTTSHHHHHHHHHS---SEEEEECSCHHHHHHHHHHTTT--CCSEEEECCCGG
T ss_pred             ccCCHHHHHHHHHhCCCCCCCEEEEEeCCchHHHHHHHHcC---CeEEEEECCHHHHHHHHHhhcc--CCCeEEEEChHH
Confidence            44555555666777788899999999999999999999883   7899999999999999999864  358999999999


Q ss_pred             CCCCCC-CCCceEEEEEEecccc
Q 019802          303 NLDPKD-PAYSEVSLIFCIFTWM  324 (335)
Q Consensus       303 ~~~~~~-~~fd~V~~IllD~~cs  324 (335)
                      +++..+ ..|    .|+.++|..
T Consensus        87 ~~~~~~~~~~----~vv~nlPy~  105 (244)
T 1qam_A           87 QFKFPKNQSY----KIFGNIPYN  105 (244)
T ss_dssp             GCCCCSSCCC----EEEEECCGG
T ss_pred             hCCcccCCCe----EEEEeCCcc
Confidence            987653 334    377788764

>3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens}

Probab=98.85  E-value=5.1e-09  Score=93.35  Aligned_cols=76  Identities=18%  Similarity=0.220  Sum_probs=62.4

Q ss_pred             CCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHH------hCCCcEEEEeccCCC-CC--CCCC
Q 019802          239 PKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKL------SGAANIEVLHGDFLN-LD--PKDP  309 (335)
Q Consensus       239 ~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~------~g~~ni~~~~~D~~~-~~--~~~~  309 (335)
                      ..++.+|||+|||+|..+..+|... +...|+++|+|+.+++.++++++.      .+..||.++++|+.+ ++  ..+.
T Consensus        44 ~~~~~~vLDiGcG~G~~~~~la~~~-p~~~v~GiDis~~~l~~A~~~~~~l~~~~~~~~~nv~~~~~d~~~~l~~~~~~~  122 (235)
T 3ckk_A           44 AQAQVEFADIGCGYGGLLVELSPLF-PDTLILGLEIRVKVSDYVQDRIRALRAAPAGGFQNIACLRSNAMKHLPNFFYKG  122 (235)
T ss_dssp             --CCEEEEEETCTTCHHHHHHGGGS-TTSEEEEEESCHHHHHHHHHHHHHHHHSTTCCCTTEEEEECCTTTCHHHHCCTT
T ss_pred             cCCCCeEEEEccCCcHHHHHHHHHC-CCCeEEEEECCHHHHHHHHHHHHHHHHHHhcCCCeEEEEECcHHHhhhhhCCCc
Confidence            3467799999999999999999874 457999999999999999998875      467899999999987 54  4556


Q ss_pred             CCceEE
Q 019802          310 AYSEVS  315 (335)
Q Consensus       310 ~fd~V~  315 (335)
                      +||.|.
T Consensus       123 ~~D~v~  128 (235)
T 3ckk_A          123 QLTKMF  128 (235)
T ss_dssp             CEEEEE
T ss_pred             CeeEEE
Confidence            777643

>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A

Probab=98.84  E-value=8e-09  Score=90.16  Aligned_cols=84  Identities=20%  Similarity=0.258  Sum_probs=69.9

Q ss_pred             HHHHHHcCCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCC-----cEEEEeccCCCCC
Q 019802          231 SMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAA-----NIEVLHGDFLNLD  305 (335)
Q Consensus       231 ~l~~~~l~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~-----ni~~~~~D~~~~~  305 (335)
                      ..+...+...++.+|||+|||+|..+..+++.. +..+|+++|+|+.+++.+++++...++.     +++++++|+..++
T Consensus        19 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~   97 (219)
T 3jwg_A           19 GTVVAVLKSVNAKKVIDLGCGEGNLLSLLLKDK-SFEQITGVDVSYSVLERAKDRLKIDRLPEMQRKRISLFQSSLVYRD   97 (219)
T ss_dssp             HHHHHHHHHTTCCEEEEETCTTCHHHHHHHTST-TCCEEEEEESCHHHHHHHHHHHTGGGSCHHHHTTEEEEECCSSSCC
T ss_pred             HHHHHHHhhcCCCEEEEecCCCCHHHHHHHhcC-CCCEEEEEECCHHHHHHHHHHHHhhccccccCcceEEEeCcccccc
Confidence            344455556788999999999999999998763 3479999999999999999999887775     7999999998877


Q ss_pred             CCCCCCceEE
Q 019802          306 PKDPAYSEVS  315 (335)
Q Consensus       306 ~~~~~fd~V~  315 (335)
                      ..+.+||.|.
T Consensus        98 ~~~~~fD~V~  107 (219)
T 3jwg_A           98 KRFSGYDAAT  107 (219)
T ss_dssp             GGGTTCSEEE
T ss_pred             cccCCCCEEE
Confidence            6667899743

>3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A*

Probab=98.84  E-value=1.5e-08  Score=96.78  Aligned_cols=80  Identities=20%  Similarity=0.268  Sum_probs=69.5

Q ss_pred             CCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCceEEEEE
Q 019802          239 PKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVSLIF  318 (335)
Q Consensus       239 ~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~~~~~~fd~V~~Il  318 (335)
                      ..++.+|||+|||+|..+..++..   ..+|+++|+|+.+++.+++|++..++. ++++++|+.+....+.+||   .|+
T Consensus       231 ~~~~~~VLDlGcG~G~~~~~la~~---g~~V~gvDis~~al~~A~~n~~~~~~~-v~~~~~D~~~~~~~~~~fD---~Ii  303 (381)
T 3dmg_A          231 GVRGRQVLDLGAGYGALTLPLARM---GAEVVGVEDDLASVLSLQKGLEANALK-AQALHSDVDEALTEEARFD---IIV  303 (381)
T ss_dssp             TTTTCEEEEETCTTSTTHHHHHHT---TCEEEEEESBHHHHHHHHHHHHHTTCC-CEEEECSTTTTSCTTCCEE---EEE
T ss_pred             CCCCCEEEEEeeeCCHHHHHHHHc---CCEEEEEECCHHHHHHHHHHHHHcCCC-eEEEEcchhhccccCCCeE---EEE
Confidence            347889999999999999999987   369999999999999999999999885 8999999998876555666   588


Q ss_pred             Eeccccc
Q 019802          319 CIFTWMI  325 (335)
Q Consensus       319 lD~~cs~  325 (335)
                      +++|...
T Consensus       304 ~npp~~~  310 (381)
T 3dmg_A          304 TNPPFHV  310 (381)
T ss_dssp             ECCCCCT
T ss_pred             ECCchhh
Confidence            9988764

>1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20

Probab=98.84  E-value=1.3e-08  Score=87.92  Aligned_cols=71  Identities=18%  Similarity=0.292  Sum_probs=62.9

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCce
Q 019802          241 PGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSE  313 (335)
Q Consensus       241 ~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~~~~~~fd~  313 (335)
                      ++.+|||+|||+|..+..++... +..+++++|+++.+++.++++++..|+.++.+.++|+.++++ ..+||.
T Consensus        65 ~~~~vLDiG~G~G~~~~~l~~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~-~~~~D~  135 (207)
T 1jsx_A           65 QGERFIDVGTGPGLPGIPLSIVR-PEAHFTLLDSLGKRVRFLRQVQHELKLENIEPVQSRVEEFPS-EPPFDG  135 (207)
T ss_dssp             CSSEEEEETCTTTTTHHHHHHHC-TTSEEEEEESCHHHHHHHHHHHHHTTCSSEEEEECCTTTSCC-CSCEEE
T ss_pred             CCCeEEEECCCCCHHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEecchhhCCc-cCCcCE
Confidence            47899999999999999999875 457999999999999999999999999889999999998763 345664

>2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A

Probab=98.83  E-value=7.5e-09  Score=89.12  Aligned_cols=74  Identities=19%  Similarity=0.295  Sum_probs=64.6

Q ss_pred             CCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCceEEEE
Q 019802          239 PKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVSLI  317 (335)
Q Consensus       239 ~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~~~~~~fd~V~~I  317 (335)
                      ..++ +|||+|||+|..+..++..   ..+|+++|+++.+++.+++++...+. ++.+.++|+.+++..+..||.|.+.
T Consensus        28 ~~~~-~vLdiGcG~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~~~~~~fD~v~~~  101 (202)
T 2kw5_A           28 IPQG-KILCLAEGEGRNACFLASL---GYEVTAVDQSSVGLAKAKQLAQEKGV-KITTVQSNLADFDIVADAWEGIVSI  101 (202)
T ss_dssp             SCSS-EEEECCCSCTHHHHHHHTT---TCEEEEECSSHHHHHHHHHHHHHHTC-CEEEECCBTTTBSCCTTTCSEEEEE
T ss_pred             CCCC-CEEEECCCCCHhHHHHHhC---CCeEEEEECCHHHHHHHHHHHHhcCC-ceEEEEcChhhcCCCcCCccEEEEE
Confidence            3566 9999999999999998875   36999999999999999999999887 7999999999988777789976543

>3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str}

Probab=98.83  E-value=1e-08  Score=98.27  Aligned_cols=89  Identities=11%  Similarity=0.200  Sum_probs=74.7

Q ss_pred             HHHHHHcCCCCCCEEEEEcCCCchHHHHHHHHcCC-------------------------------------CeEEEEEe
Q 019802          231 SMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKG-------------------------------------KGKIVACE  273 (335)
Q Consensus       231 ~l~~~~l~~~~g~~VLD~cagpG~kt~~la~~~~~-------------------------------------~g~i~a~D  273 (335)
                      ..+..+....++..|||.|||+|+.++.++....+                                     ..+|+++|
T Consensus       191 a~ll~l~~~~~~~~vlDp~CGSGt~~ieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~GvD  270 (393)
T 3k0b_A          191 AALVLLTSWHPDRPFYDPVCGSGTIPIEAALIGQNIAPGFNREFVSETWDWMPKQVWADARQEAEDLANYDQPLNIIGGD  270 (393)
T ss_dssp             HHHHHHSCCCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEEEEE
T ss_pred             HHHHHHhCCCCCCeEEEcCCCCCHHHHHHHHHhcCcCCCccccchhhccccCCHHHHHHHHHHHHHhhcccCCceEEEEE
Confidence            33445677888999999999999999988876432                                     15699999


Q ss_pred             CCHHHHHHHHHHHHHhCCCc-EEEEeccCCCCCCCCCCCceEEEEEEeccc
Q 019802          274 LNKERVRRLKDTIKLSGAAN-IEVLHGDFLNLDPKDPAYSEVSLIFCIFTW  323 (335)
Q Consensus       274 ~~~~rl~~~~~~~~~~g~~n-i~~~~~D~~~~~~~~~~fd~V~~IllD~~c  323 (335)
                      +++.+++.+++|++..|+.+ |++.++|+.++++.. .||   .|++|||.
T Consensus       271 id~~al~~Ar~Na~~~gl~~~I~~~~~D~~~~~~~~-~fD---~Iv~NPPY  317 (393)
T 3k0b_A          271 IDARLIEIAKQNAVEAGLGDLITFRQLQVADFQTED-EYG---VVVANPPY  317 (393)
T ss_dssp             SCHHHHHHHHHHHHHTTCTTCSEEEECCGGGCCCCC-CSC---EEEECCCC
T ss_pred             CCHHHHHHHHHHHHHcCCCCceEEEECChHhCCCCC-CCC---EEEECCCC
Confidence            99999999999999999974 999999999987643 577   49999996

>3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae}

Probab=98.83  E-value=2.1e-08  Score=92.07  Aligned_cols=76  Identities=13%  Similarity=0.118  Sum_probs=66.1

Q ss_pred             CCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHh--CCCcEEEEeccCCCCCCCC------CC
Q 019802          239 PKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLS--GAANIEVLHGDFLNLDPKD------PA  310 (335)
Q Consensus       239 ~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~--g~~ni~~~~~D~~~~~~~~------~~  310 (335)
                      ..++.+|||+|||+|..+..+++.+.+..+|+++|+|+.+++.++++++..  +..+++++++|+.+++..+      ++
T Consensus        34 ~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~  113 (299)
T 3g5t_A           34 DGERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKEGSPDTYKNVSFKISSSDDFKFLGADSVDKQK  113 (299)
T ss_dssp             CSCCSEEEEETCTTTHHHHHHHHHSSCCSEEEEEESCHHHHHHHHHHHHHCC-CCTTEEEEECCTTCCGGGCTTTTTSSC
T ss_pred             cCCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHhccCCCCceEEEEcCHHhCCccccccccCCC
Confidence            368999999999999999999987656689999999999999999999987  3468999999999988665      66


Q ss_pred             CceE
Q 019802          311 YSEV  314 (335)
Q Consensus       311 fd~V  314 (335)
                      ||.|
T Consensus       114 fD~V  117 (299)
T 3g5t_A          114 IDMI  117 (299)
T ss_dssp             EEEE
T ss_pred             eeEE
Confidence            7754

>3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A

Probab=98.82  E-value=7.6e-09  Score=94.41  Aligned_cols=82  Identities=16%  Similarity=0.184  Sum_probs=69.4

Q ss_pred             HHHHHHHcCCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCC
Q 019802          230 SSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDP  309 (335)
Q Consensus       230 s~l~~~~l~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~~~~~  309 (335)
                      +.+...+....++.+|||+|||+|..+..+++..++..+|+++|+|+.+++.+++++...+. ++++.++|+.+++.. +
T Consensus        11 ~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~-~v~~~~~d~~~~~~~-~   88 (284)
T 3gu3_A           11 SFLVNTVWKITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPY-DSEFLEGDATEIELN-D   88 (284)
T ss_dssp             HHHHHTTSCCCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEESCHHHHHHHHHHHHSSSS-EEEEEESCTTTCCCS-S
T ss_pred             HHHHHHHhccCCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHhcCC-ceEEEEcchhhcCcC-C
Confidence            34444455677899999999999999999998876568999999999999999999998877 899999999998763 4


Q ss_pred             CCce
Q 019802          310 AYSE  313 (335)
Q Consensus       310 ~fd~  313 (335)
                      +||.
T Consensus        89 ~fD~   92 (284)
T 3gu3_A           89 KYDI   92 (284)
T ss_dssp             CEEE
T ss_pred             CeeE
Confidence            6775

>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A*

Probab=98.81  E-value=9.1e-09  Score=92.08  Aligned_cols=78  Identities=13%  Similarity=0.147  Sum_probs=67.1

Q ss_pred             HHHHcCCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCc
Q 019802          233 VAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYS  312 (335)
Q Consensus       233 ~~~~l~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~~~~~~fd  312 (335)
                      +...+.+.++.+|||+|||+|..+.+++...  ..+|+++|+|+.+++.+++++...  .+++++++|+.+++..+++||
T Consensus        47 ~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~--~~~v~~vD~s~~~~~~a~~~~~~~--~~~~~~~~d~~~~~~~~~~fD  122 (266)
T 3ujc_A           47 ILSDIELNENSKVLDIGSGLGGGCMYINEKY--GAHTHGIDICSNIVNMANERVSGN--NKIIFEANDILTKEFPENNFD  122 (266)
T ss_dssp             HTTTCCCCTTCEEEEETCTTSHHHHHHHHHH--CCEEEEEESCHHHHHHHHHTCCSC--TTEEEEECCTTTCCCCTTCEE
T ss_pred             HHHhcCCCCCCEEEEECCCCCHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHhhcC--CCeEEEECccccCCCCCCcEE
Confidence            3445567789999999999999999999976  469999999999999999987755  689999999999887777888


Q ss_pred             eE
Q 019802          313 EV  314 (335)
Q Consensus       313 ~V  314 (335)
                      .|
T Consensus       123 ~v  124 (266)
T 3ujc_A          123 LI  124 (266)
T ss_dssp             EE
T ss_pred             EE
Confidence            64

>2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A*

Probab=98.81  E-value=1.1e-08  Score=96.01  Aligned_cols=77  Identities=19%  Similarity=0.179  Sum_probs=67.4

Q ss_pred             CCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCC-CcEEEEeccCCCCCCCCCCCceEEEEE
Q 019802          240 KPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGA-ANIEVLHGDFLNLDPKDPAYSEVSLIF  318 (335)
Q Consensus       240 ~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~-~ni~~~~~D~~~~~~~~~~fd~V~~Il  318 (335)
                      .+|++|||+|||+|+.+.+ +.   +..+|+++|+|+.+++.+++|++..|+ .+++++++|+.++.   ..||   .|+
T Consensus       194 ~~~~~VLDlg~G~G~~~l~-a~---~~~~V~~vD~s~~ai~~a~~n~~~n~l~~~v~~~~~D~~~~~---~~fD---~Vi  263 (336)
T 2yx1_A          194 SLNDVVVDMFAGVGPFSIA-CK---NAKKIYAIDINPHAIELLKKNIKLNKLEHKIIPILSDVREVD---VKGN---RVI  263 (336)
T ss_dssp             CTTCEEEETTCTTSHHHHH-TT---TSSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCC---CCEE---EEE
T ss_pred             CCCCEEEEccCccCHHHHh-cc---CCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECChHHhc---CCCc---EEE
Confidence            5799999999999999998 76   357999999999999999999999998 57999999998876   4455   589


Q ss_pred             Eecccccc
Q 019802          319 CIFTWMII  326 (335)
Q Consensus       319 lD~~cs~~  326 (335)
                      +|+|..+.
T Consensus       264 ~dpP~~~~  271 (336)
T 2yx1_A          264 MNLPKFAH  271 (336)
T ss_dssp             ECCTTTGG
T ss_pred             ECCcHhHH
Confidence            99987764

>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}

Probab=98.81  E-value=1.3e-08  Score=93.01  Aligned_cols=97  Identities=19%  Similarity=0.246  Sum_probs=74.3

Q ss_pred             EEecCchHHHHHHHcCCCCCCEEEEEcCCCchHHHHHHHHcCC-CeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccC
Q 019802          223 VFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKG-KGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDF  301 (335)
Q Consensus       223 ~~iQd~~s~l~~~~l~~~~g~~VLD~cagpG~kt~~la~~~~~-~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~  301 (335)
                      |.+...-...++..+++.++++|||+|||+|..|..|++.... +++|+++|+|+.+++.++++.    ..+++++++|+
T Consensus        24 fL~d~~i~~~iv~~~~~~~~~~VLEIG~G~G~lt~~La~~~~~~~~~V~avDid~~~l~~a~~~~----~~~v~~i~~D~   99 (279)
T 3uzu_A           24 FLVDHGVIDAIVAAIRPERGERMVEIGPGLGALTGPVIARLATPGSPLHAVELDRDLIGRLEQRF----GELLELHAGDA   99 (279)
T ss_dssp             EECCHHHHHHHHHHHCCCTTCEEEEECCTTSTTHHHHHHHHCBTTBCEEEEECCHHHHHHHHHHH----GGGEEEEESCG
T ss_pred             ccCCHHHHHHHHHhcCCCCcCEEEEEccccHHHHHHHHHhCCCcCCeEEEEECCHHHHHHHHHhc----CCCcEEEECCh
Confidence            3333334455667788899999999999999999999998543 366999999999999999993    45799999999


Q ss_pred             CCCCCCCCCCc----eEEEEEEecccc
Q 019802          302 LNLDPKDPAYS----EVSLIFCIFTWM  324 (335)
Q Consensus       302 ~~~~~~~~~fd----~V~~IllD~~cs  324 (335)
                      .++++.+- ++    .-..|+-++|..
T Consensus       100 ~~~~~~~~-~~~~~~~~~~vv~NlPY~  125 (279)
T 3uzu_A          100 LTFDFGSI-ARPGDEPSLRIIGNLPYN  125 (279)
T ss_dssp             GGCCGGGG-SCSSSSCCEEEEEECCHH
T ss_pred             hcCChhHh-cccccCCceEEEEccCcc
Confidence            99886432 21    223577787754

>1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36

Probab=98.81  E-value=3.4e-09  Score=92.11  Aligned_cols=75  Identities=25%  Similarity=0.328  Sum_probs=62.3

Q ss_pred             cCCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHh------------CCCcEEEEeccCCCC
Q 019802          237 LAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLS------------GAANIEVLHGDFLNL  304 (335)
Q Consensus       237 l~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~------------g~~ni~~~~~D~~~~  304 (335)
                      +.+.++.+|||+|||+|..+..|++.   ..+|+++|+|+.|++.++++....            +..+++++++|+.++
T Consensus        18 l~~~~~~~vLD~GCG~G~~~~~la~~---g~~V~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~l   94 (203)
T 1pjz_A           18 LNVVPGARVLVPLCGKSQDMSWLSGQ---GYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFAL   94 (203)
T ss_dssp             HCCCTTCEEEETTTCCSHHHHHHHHH---CCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSSS
T ss_pred             cccCCCCEEEEeCCCCcHhHHHHHHC---CCeEEEEeCCHHHHHHHHHHccCCcccccccccccccCCccEEEECccccC
Confidence            45678999999999999999999987   358999999999999999876431            235799999999999


Q ss_pred             CCCC-CCCceE
Q 019802          305 DPKD-PAYSEV  314 (335)
Q Consensus       305 ~~~~-~~fd~V  314 (335)
                      ++.+ ++||.|
T Consensus        95 ~~~~~~~fD~v  105 (203)
T 1pjz_A           95 TARDIGHCAAF  105 (203)
T ss_dssp             THHHHHSEEEE
T ss_pred             CcccCCCEEEE
Confidence            8654 578864

>2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans}

Probab=98.81  E-value=3.2e-09  Score=94.35  Aligned_cols=79  Identities=16%  Similarity=0.287  Sum_probs=67.8

Q ss_pred             ecCchHHHHHHHcCCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCc-EEEEeccCCC
Q 019802          225 LQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAAN-IEVLHGDFLN  303 (335)
Q Consensus       225 iQd~~s~l~~~~l~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~n-i~~~~~D~~~  303 (335)
                      ++.....++..++...++.+|||+|||+|..+..++..+++.++|+++|+++.+++.+++++++.|+.+ +.++++|+.+
T Consensus        44 ~~~~~~~~l~~l~~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~d~~~  123 (239)
T 2hnk_A           44 ISPEEGQFLNILTKISGAKRIIEIGTFTGYSSLCFASALPEDGKILCCDVSEEWTNVARKYWKENGLENKIFLKLGSALE  123 (239)
T ss_dssp             CCHHHHHHHHHHHHHHTCSEEEEECCTTCHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHH
T ss_pred             cCHHHHHHHHHHHHhhCcCEEEEEeCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHH
Confidence            344445566666666788999999999999999999997656899999999999999999999999876 9999999866

>1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A*

Probab=98.80  E-value=1e-08  Score=86.74  Aligned_cols=91  Identities=16%  Similarity=0.193  Sum_probs=72.3

Q ss_pred             cCchHHHHHHHcCCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCC-CcEEEEeccCCCC
Q 019802          226 QGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGA-ANIEVLHGDFLNL  304 (335)
Q Consensus       226 Qd~~s~l~~~~l~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~-~ni~~~~~D~~~~  304 (335)
                      ++.....+...+.+.++.+|||+|||+|..+..++...   .+|+++|+++.+++.++++++..|+ .++.+.++|+.+.
T Consensus        18 ~~~~~~~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~~---~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~   94 (192)
T 1l3i_A           18 AMEVRCLIMCLAEPGKNDVAVDVGCGTGGVTLELAGRV---RRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPEA   94 (192)
T ss_dssp             CHHHHHHHHHHHCCCTTCEEEEESCTTSHHHHHHHTTS---SEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHHH
T ss_pred             hHHHHHHHHHhcCCCCCCEEEEECCCCCHHHHHHHHhc---CEEEEEECCHHHHHHHHHHHHHcCCCcceEEEecCHHHh
Confidence            33444555666788899999999999999999998764   7999999999999999999999998 7899999998772


Q ss_pred             CCCCCCCceEEEEEEecc
Q 019802          305 DPKDPAYSEVSLIFCIFT  322 (335)
Q Consensus       305 ~~~~~~fd~V~~IllD~~  322 (335)
                      .+....||   .|+++.+
T Consensus        95 ~~~~~~~D---~v~~~~~  109 (192)
T 1l3i_A           95 LCKIPDID---IAVVGGS  109 (192)
T ss_dssp             HTTSCCEE---EEEESCC
T ss_pred             cccCCCCC---EEEECCc
Confidence            22213455   5777654

>1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=98.78  E-value=7.9e-09  Score=91.58  Aligned_cols=76  Identities=16%  Similarity=0.122  Sum_probs=64.5

Q ss_pred             CCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCC--CCCCCCCceEEE
Q 019802          239 PKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNL--DPKDPAYSEVSL  316 (335)
Q Consensus       239 ~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~--~~~~~~fd~V~~  316 (335)
                      +.++.+|||+|||+|..+..++..  ...+|+++|+|+.+++.++++.+..+ .++.++++|+.++  +..+++||.   
T Consensus        58 ~~~~~~vLDiGcGtG~~~~~l~~~--~~~~v~gvD~s~~~l~~a~~~~~~~~-~~v~~~~~d~~~~~~~~~~~~fD~---  131 (236)
T 1zx0_A           58 SSKGGRVLEVGFGMAIAASKVQEA--PIDEHWIIECNDGVFQRLRDWAPRQT-HKVIPLKGLWEDVAPTLPDGHFDG---  131 (236)
T ss_dssp             TTTCEEEEEECCTTSHHHHHHHTS--CEEEEEEEECCHHHHHHHHHHGGGCS-SEEEEEESCHHHHGGGSCTTCEEE---
T ss_pred             CCCCCeEEEEeccCCHHHHHHHhc--CCCeEEEEcCCHHHHHHHHHHHHhcC-CCeEEEecCHHHhhcccCCCceEE---
Confidence            568899999999999999999654  23589999999999999999998877 5799999999987  666677875   


Q ss_pred             EEEe
Q 019802          317 IFCI  320 (335)
Q Consensus       317 IllD  320 (335)
                      |++|
T Consensus       132 V~~d  135 (236)
T 1zx0_A          132 ILYD  135 (236)
T ss_dssp             EEEC
T ss_pred             EEEC
Confidence            6664

>1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32

Probab=98.78  E-value=1.6e-08  Score=87.20  Aligned_cols=74  Identities=15%  Similarity=0.205  Sum_probs=62.3

Q ss_pred             CCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCceEEEE
Q 019802          238 APKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVSLI  317 (335)
Q Consensus       238 ~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~~~~~~fd~V~~I  317 (335)
                      .+.++.+|||+|||+|..+..++..  +..+|+++|+++.+++.+++++.     +++++++|+.+++   .+||   .|
T Consensus        48 ~~~~~~~vlD~gcG~G~~~~~l~~~--~~~~v~~vD~~~~~~~~a~~~~~-----~~~~~~~d~~~~~---~~~D---~v  114 (200)
T 1ne2_A           48 GNIGGRSVIDAGTGNGILACGSYLL--GAESVTAFDIDPDAIETAKRNCG-----GVNFMVADVSEIS---GKYD---TW  114 (200)
T ss_dssp             TSSBTSEEEEETCTTCHHHHHHHHT--TBSEEEEEESCHHHHHHHHHHCT-----TSEEEECCGGGCC---CCEE---EE
T ss_pred             CCCCCCEEEEEeCCccHHHHHHHHc--CCCEEEEEECCHHHHHHHHHhcC-----CCEEEECcHHHCC---CCee---EE
Confidence            4568899999999999999999876  34689999999999999999976     6899999998875   3455   68


Q ss_pred             EEecccc
Q 019802          318 FCIFTWM  324 (335)
Q Consensus       318 llD~~cs  324 (335)
                      ++|+|..
T Consensus       115 ~~~~p~~  121 (200)
T 1ne2_A          115 IMNPPFG  121 (200)
T ss_dssp             EECCCC-
T ss_pred             EECCCch
Confidence            8998853

>3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A*

Probab=98.78  E-value=7e-09  Score=99.14  Aligned_cols=89  Identities=18%  Similarity=0.138  Sum_probs=69.8

Q ss_pred             HHHHcCCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHH-------HHhCC--CcEEEEeccCCC
Q 019802          233 VAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTI-------KLSGA--ANIEVLHGDFLN  303 (335)
Q Consensus       233 ~~~~l~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~-------~~~g~--~ni~~~~~D~~~  303 (335)
                      +...+.+.+|++|||+|||+|..+..++...+ ..+|+++|+++.+++.++++.       +..|+  .+|+++++|+.+
T Consensus       165 il~~l~l~~gd~VLDLGCGtG~l~l~lA~~~g-~~kVvGIDiS~~~lelAr~n~e~frkr~~~~Gl~~~rVefi~GD~~~  243 (438)
T 3uwp_A          165 MIDEIKMTDDDLFVDLGSGVGQVVLQVAAATN-CKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGDFLS  243 (438)
T ss_dssp             HHHHHCCCTTCEEEEESCTTSHHHHHHHHHCC-CSEEEEEECCHHHHHHHHHHHHHHHHHHHHHTBCCCEEEEEECCTTS
T ss_pred             HHHhcCCCCCCEEEEeCCCCCHHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEEECcccC
Confidence            44567889999999999999999999998753 457999999999999998865       34565  589999999999


Q ss_pred             CCCCCCCCceEEEEEEeccc
Q 019802          304 LDPKDPAYSEVSLIFCIFTW  323 (335)
Q Consensus       304 ~~~~~~~fd~V~~IllD~~c  323 (335)
                      ++..+ .|+.++.|+++.++
T Consensus       244 lp~~d-~~~~aDVVf~Nn~~  262 (438)
T 3uwp_A          244 EEWRE-RIANTSVIFVNNFA  262 (438)
T ss_dssp             HHHHH-HHHTCSEEEECCTT
T ss_pred             Ccccc-ccCCccEEEEcccc
Confidence            87533 12334457776654

>3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A*

Probab=98.78  E-value=9.6e-09  Score=89.36  Aligned_cols=81  Identities=15%  Similarity=0.160  Sum_probs=67.8

Q ss_pred             chHHHHHHHcCCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCC
Q 019802          228 KASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPK  307 (335)
Q Consensus       228 ~~s~l~~~~l~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~~~  307 (335)
                      .-..++...+...++.+|||+|||+|..+..+++.   ..+|+++|+++.+++.+++++...+  +++++++|+.+++ .
T Consensus        38 ~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~~~~~~--~~~~~~~d~~~~~-~  111 (216)
T 3ofk_A           38 RHTQLLRLSLSSGAVSNGLEIGCAAGAFTEKLAPH---CKRLTVIDVMPRAIGRACQRTKRWS--HISWAATDILQFS-T  111 (216)
T ss_dssp             HHHHHHHHHTTTSSEEEEEEECCTTSHHHHHHGGG---EEEEEEEESCHHHHHHHHHHTTTCS--SEEEEECCTTTCC-C
T ss_pred             HHHHHHHHHcccCCCCcEEEEcCCCCHHHHHHHHc---CCEEEEEECCHHHHHHHHHhcccCC--CeEEEEcchhhCC-C
Confidence            34455666777788999999999999999999876   3689999999999999999988654  7999999999988 4


Q ss_pred             CCCCceE
Q 019802          308 DPAYSEV  314 (335)
Q Consensus       308 ~~~fd~V  314 (335)
                      +++||.|
T Consensus       112 ~~~fD~v  118 (216)
T 3ofk_A          112 AELFDLI  118 (216)
T ss_dssp             SCCEEEE
T ss_pred             CCCccEE
Confidence            5667753

>3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP}

Probab=98.78  E-value=3.5e-09  Score=93.92  Aligned_cols=95  Identities=19%  Similarity=0.259  Sum_probs=74.6

Q ss_pred             cCchHHHHHHHcCCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCC-cEEEEeccCCCC
Q 019802          226 QGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAA-NIEVLHGDFLNL  304 (335)
Q Consensus       226 Qd~~s~l~~~~l~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~-ni~~~~~D~~~~  304 (335)
                      +....+++..++...++.+|||+|||+|..+..++..+++.++|+++|+++.+++.+++++++.|+. +|+++++|+.+.
T Consensus        57 ~~~~~~~l~~l~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~  136 (232)
T 3cbg_A           57 SPEQAQFLGLLISLTGAKQVLEIGVFRGYSALAMALQLPPDGQIIACDQDPNATAIAKKYWQKAGVAEKISLRLGPALAT  136 (232)
T ss_dssp             CHHHHHHHHHHHHHHTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHH
T ss_pred             CHHHHHHHHHHHHhcCCCEEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHH
Confidence            3444555555555567889999999999999999998766789999999999999999999999985 599999998653


Q ss_pred             C----CCC--CCCceEEEEEEeccc
Q 019802          305 D----PKD--PAYSEVSLIFCIFTW  323 (335)
Q Consensus       305 ~----~~~--~~fd~V~~IllD~~c  323 (335)
                      .    ..+  .+||   .|++|.+.
T Consensus       137 l~~l~~~~~~~~fD---~V~~d~~~  158 (232)
T 3cbg_A          137 LEQLTQGKPLPEFD---LIFIDADK  158 (232)
T ss_dssp             HHHHHTSSSCCCEE---EEEECSCG
T ss_pred             HHHHHhcCCCCCcC---EEEECCCH
Confidence            1    112  4455   58888663

>2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae}

Probab=98.77  E-value=1.9e-09  Score=97.61  Aligned_cols=89  Identities=19%  Similarity=0.181  Sum_probs=71.8

Q ss_pred             HHHHHHHcCCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCH-------HHHHHHHHHHHHhCCCc-EEEEeccC
Q 019802          230 SSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNK-------ERVRRLKDTIKLSGAAN-IEVLHGDF  301 (335)
Q Consensus       230 s~l~~~~l~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~-------~rl~~~~~~~~~~g~~n-i~~~~~D~  301 (335)
                      ..++...+.+.++.+|||+|||+|..+..++..   .++|+++|+++       .+++.+++|++..|+.+ |+++++|+
T Consensus        72 ~~~l~~a~~~~~~~~VLDlgcG~G~~a~~lA~~---g~~V~~vD~s~~~~~ll~~~l~~a~~n~~~~~~~~ri~~~~~d~  148 (258)
T 2r6z_A           72 GELIAKAVNHTAHPTVWDATAGLGRDSFVLASL---GLTVTAFEQHPAVACLLSDGIRRALLNPETQDTAARINLHFGNA  148 (258)
T ss_dssp             -CHHHHHTTGGGCCCEEETTCTTCHHHHHHHHT---TCCEEEEECCHHHHHHHHHHHHHHHHSHHHHHHHTTEEEEESCH
T ss_pred             hHHHHHHhCcCCcCeEEEeeCccCHHHHHHHHh---CCEEEEEECChhhhHHHHHHHHHHHhHHHhhCCccCeEEEECCH
Confidence            345566666677899999999999999999986   36899999999       99999999999888866 99999999


Q ss_pred             CCCCC--CC--CCCceEEEEEEecccc
Q 019802          302 LNLDP--KD--PAYSEVSLIFCIFTWM  324 (335)
Q Consensus       302 ~~~~~--~~--~~fd~V~~IllD~~cs  324 (335)
                      .++.+  .+  .+||.   |++||+..
T Consensus       149 ~~~l~~~~~~~~~fD~---V~~dP~~~  172 (258)
T 2r6z_A          149 AEQMPALVKTQGKPDI---VYLDPMYP  172 (258)
T ss_dssp             HHHHHHHHHHHCCCSE---EEECCCC-
T ss_pred             HHHHHhhhccCCCccE---EEECCCCC
Confidence            87532  22  46875   89998754

>1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24

Probab=98.77  E-value=1.1e-09  Score=97.99  Aligned_cols=95  Identities=17%  Similarity=0.238  Sum_probs=78.5

Q ss_pred             EEecCchHHHHHHHcCCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCC
Q 019802          223 VFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFL  302 (335)
Q Consensus       223 ~~iQd~~s~l~~~~l~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~  302 (335)
                      |.++......+...+++.++++|||+|||+|..+..+++..   ++|+++|+|+.+++.++++++  +..+++++++|+.
T Consensus        11 fl~~~~~~~~i~~~~~~~~~~~VLDiG~G~G~~~~~l~~~~---~~v~~id~~~~~~~~a~~~~~--~~~~v~~~~~D~~   85 (245)
T 1yub_A           11 FLTSEKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKIS---KQVTSIELDSHLFNLSSEKLK--LNTRVTLIHQDIL   85 (245)
T ss_dssp             BCCCTTTHHHHHHHCCCCSSEEEEECSCCCSSCSHHHHHHS---SEEEESSSSCSSSSSSSCTTT--TCSEEEECCSCCT
T ss_pred             CCCCHHHHHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHhC---CeEEEEECCHHHHHHHHHHhc--cCCceEEEECChh
Confidence            55566667777888888999999999999999999999872   789999999999999988876  4568999999999


Q ss_pred             CCCCCC-CCCceEEEEEEecccccc
Q 019802          303 NLDPKD-PAYSEVSLIFCIFTWMII  326 (335)
Q Consensus       303 ~~~~~~-~~fd~V~~IllD~~cs~~  326 (335)
                      +++... .+|    .|+.++|...+
T Consensus        86 ~~~~~~~~~f----~vv~n~Py~~~  106 (245)
T 1yub_A           86 QFQFPNKQRY----KIVGNIPYHLS  106 (245)
T ss_dssp             TTTCCCSSEE----EEEEECCSSSC
T ss_pred             hcCcccCCCc----EEEEeCCcccc
Confidence            987543 334    48889887654

>3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0

Probab=98.77  E-value=5.9e-09  Score=89.94  Aligned_cols=77  Identities=21%  Similarity=0.211  Sum_probs=59.5

Q ss_pred             CCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCC---CCC----
Q 019802          239 PKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKD---PAY----  311 (335)
Q Consensus       239 ~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~~~~---~~f----  311 (335)
                      +++|.+|||+|||||++|..+++.   .++|+|+|+++..           ...+++++++|+.+.+...   ..+    
T Consensus        23 ~~~g~~VLDlG~G~G~~s~~la~~---~~~V~gvD~~~~~-----------~~~~v~~~~~D~~~~~~~~~~~~~~~~~~   88 (191)
T 3dou_A           23 VRKGDAVIEIGSSPGGWTQVLNSL---ARKIISIDLQEME-----------EIAGVRFIRCDIFKETIFDDIDRALREEG   88 (191)
T ss_dssp             SCTTCEEEEESCTTCHHHHHHTTT---CSEEEEEESSCCC-----------CCTTCEEEECCTTSSSHHHHHHHHHHHHT
T ss_pred             CCCCCEEEEEeecCCHHHHHHHHc---CCcEEEEeccccc-----------cCCCeEEEEccccCHHHHHHHHHHhhccc
Confidence            578999999999999999999887   5899999999752           3468999999998865210   000    


Q ss_pred             -ceEEEEEEeccccccccc
Q 019802          312 -SEVSLIFCIFTWMIIMFH  329 (335)
Q Consensus       312 -d~V~~IllD~~cs~~g~~  329 (335)
                       +.+|.|++|+++..+|.+
T Consensus        89 ~~~~D~Vlsd~~~~~~g~~  107 (191)
T 3dou_A           89 IEKVDDVVSDAMAKVSGIP  107 (191)
T ss_dssp             CSSEEEEEECCCCCCCSCH
T ss_pred             CCcceEEecCCCcCCCCCc
Confidence             145679999988877754

>2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45

Probab=98.77  E-value=1.9e-08  Score=94.51  Aligned_cols=82  Identities=12%  Similarity=0.051  Sum_probs=69.3

Q ss_pred             CCCCCCEEEEEcCCCchHHHHHHHHcCCC----eEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCce
Q 019802          238 APKPGWKVLDACSAPGNKTVHLAALMKGK----GKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSE  313 (335)
Q Consensus       238 ~~~~g~~VLD~cagpG~kt~~la~~~~~~----g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~~~~~~fd~  313 (335)
                      .+.++.+|||.|||+|+.+..+++.+...    ..|+++|+++.+++.++.|+...|+ ++.+.++|+....+ ...|  
T Consensus       127 ~~~~~~~VlDp~cGsG~~l~~~~~~~~~~~~~~~~v~GiDi~~~~~~~a~~n~~~~g~-~~~i~~~D~l~~~~-~~~f--  202 (344)
T 2f8l_A          127 QKKKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQ-KMTLLHQDGLANLL-VDPV--  202 (344)
T ss_dssp             TTCSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTC-CCEEEESCTTSCCC-CCCE--
T ss_pred             CCCCCCEEEeCCCCccHHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHHHHhCCC-CceEEECCCCCccc-cCCc--
Confidence            56678899999999999999999887533    7999999999999999999999998 78999999877442 2334  


Q ss_pred             EEEEEEecccc
Q 019802          314 VSLIFCIFTWM  324 (335)
Q Consensus       314 V~~IllD~~cs  324 (335)
                       |.|+.+||.+
T Consensus       203 -D~Ii~NPPfg  212 (344)
T 2f8l_A          203 -DVVISDLPVG  212 (344)
T ss_dssp             -EEEEEECCCS
T ss_pred             -cEEEECCCCC
Confidence             5699999964

>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei}

Probab=98.76  E-value=3.1e-08  Score=87.24  Aligned_cols=81  Identities=10%  Similarity=0.172  Sum_probs=67.1

Q ss_pred             HHHHcC-CCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCC
Q 019802          233 VAAALA-PKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAY  311 (335)
Q Consensus       233 ~~~~l~-~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~~~~~~f  311 (335)
                      +...+. ..++.+|||+|||+|..+..+++.. +..+|+++|+|+.+++.+++++...+  ++.++++|+.++++. ++|
T Consensus        35 ~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~--~~~~~~~d~~~~~~~-~~f  110 (234)
T 3dtn_A           35 SVSIASVDTENPDILDLGAGTGLLSAFLMEKY-PEATFTLVDMSEKMLEIAKNRFRGNL--KVKYIEADYSKYDFE-EKY  110 (234)
T ss_dssp             HHHTCCCSCSSCEEEEETCTTSHHHHHHHHHC-TTCEEEEEESCHHHHHHHHHHTCSCT--TEEEEESCTTTCCCC-SCE
T ss_pred             HHHHhhcCCCCCeEEEecCCCCHHHHHHHHhC-CCCeEEEEECCHHHHHHHHHhhccCC--CEEEEeCchhccCCC-CCc
Confidence            334444 5678999999999999999999986 45799999999999999999987666  899999999998876 567


Q ss_pred             ceEEEEEEe
Q 019802          312 SEVSLIFCI  320 (335)
Q Consensus       312 d~V~~IllD  320 (335)
                      |.   |++.
T Consensus       111 D~---v~~~  116 (234)
T 3dtn_A          111 DM---VVSA  116 (234)
T ss_dssp             EE---EEEE
T ss_pred             eE---EEEe
Confidence            65   5554

>1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A*

Probab=98.76  E-value=3.8e-08  Score=89.51  Aligned_cols=78  Identities=17%  Similarity=0.247  Sum_probs=66.6

Q ss_pred             HHHHcCCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCC-cEEEEeccCCCCCCCCCCC
Q 019802          233 VAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAA-NIEVLHGDFLNLDPKDPAY  311 (335)
Q Consensus       233 ~~~~l~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~-ni~~~~~D~~~~~~~~~~f  311 (335)
                      +...+.+.++.+|||+|||+|..+..+++..+  .+|+++|+|+.+++.++++++..|+. ++.+.++|+.+++   ++|
T Consensus        56 ~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~--~~v~gvd~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~---~~f  130 (287)
T 1kpg_A           56 ALGKLGLQPGMTLLDVGCGWGATMMRAVEKYD--VNVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQFD---EPV  130 (287)
T ss_dssp             HHTTTTCCTTCEEEEETCTTSHHHHHHHHHHC--CEEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGGCC---CCC
T ss_pred             HHHHcCCCCcCEEEEECCcccHHHHHHHHHcC--CEEEEEECCHHHHHHHHHHHHhcCCCCCeEEEECChhhCC---CCe
Confidence            34456678899999999999999999997653  49999999999999999999988874 7999999998776   579


Q ss_pred             ceEE
Q 019802          312 SEVS  315 (335)
Q Consensus       312 d~V~  315 (335)
                      |.|.
T Consensus       131 D~v~  134 (287)
T 1kpg_A          131 DRIV  134 (287)
T ss_dssp             SEEE
T ss_pred             eEEE
Confidence            9753

>4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A

Probab=98.75  E-value=2.9e-08  Score=94.66  Aligned_cols=76  Identities=21%  Similarity=0.340  Sum_probs=66.3

Q ss_pred             CCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHh-----C-C--CcEEEEeccCCCC------
Q 019802          239 PKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLS-----G-A--ANIEVLHGDFLNL------  304 (335)
Q Consensus       239 ~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~-----g-~--~ni~~~~~D~~~~------  304 (335)
                      +.++.+|||+|||+|..+..+++..++.++|+++|+|+.+++.+++++++.     | .  .+++++++|+.++      
T Consensus        81 ~~~~~~VLDlGcG~G~~~~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~g~~~~~~v~~~~~d~~~l~~~~~~  160 (383)
T 4fsd_A           81 SLEGATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAEKFFGSPSRSNVRFLKGFIENLATAEPE  160 (383)
T ss_dssp             GGTTCEEEEESCTTSHHHHHHHHHHTTTCEEEEEECCHHHHHHHHHTHHHHHHHHHSSTTCCCEEEEESCTTCGGGCBSC
T ss_pred             CCCCCEEEEecCccCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhhhhcccccCCCceEEEEccHHHhhhcccC
Confidence            567899999999999999999999876789999999999999999998876     4 3  5899999999987      


Q ss_pred             CCCCCCCceE
Q 019802          305 DPKDPAYSEV  314 (335)
Q Consensus       305 ~~~~~~fd~V  314 (335)
                      +..+++||.|
T Consensus       161 ~~~~~~fD~V  170 (383)
T 4fsd_A          161 GVPDSSVDIV  170 (383)
T ss_dssp             CCCTTCEEEE
T ss_pred             CCCCCCEEEE
Confidence            6666778763

>2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A*

Probab=98.74  E-value=4.4e-08  Score=90.56  Aligned_cols=79  Identities=15%  Similarity=0.212  Sum_probs=67.4

Q ss_pred             HHHHHcCCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCC-cEEEEeccCCCCCCCCCC
Q 019802          232 MVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAA-NIEVLHGDFLNLDPKDPA  310 (335)
Q Consensus       232 l~~~~l~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~-ni~~~~~D~~~~~~~~~~  310 (335)
                      .+...+.+.++.+|||+|||+|..+..+++..  ..+|+++|+|+.+++.++++++..|+. ++.+.++|+.+++   ++
T Consensus        81 ~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~---~~  155 (318)
T 2fk8_A           81 LNLDKLDLKPGMTLLDIGCGWGTTMRRAVERF--DVNVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWEDFA---EP  155 (318)
T ss_dssp             HHHTTSCCCTTCEEEEESCTTSHHHHHHHHHH--CCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGGCC---CC
T ss_pred             HHHHhcCCCCcCEEEEEcccchHHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChHHCC---CC
Confidence            34445667889999999999999999999876  359999999999999999999998885 5999999998875   56


Q ss_pred             CceEE
Q 019802          311 YSEVS  315 (335)
Q Consensus       311 fd~V~  315 (335)
                      ||.|.
T Consensus       156 fD~v~  160 (318)
T 2fk8_A          156 VDRIV  160 (318)
T ss_dssp             CSEEE
T ss_pred             cCEEE
Confidence            98743

>1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A

Probab=98.73  E-value=8.7e-09  Score=92.20  Aligned_cols=84  Identities=12%  Similarity=0.206  Sum_probs=66.8

Q ss_pred             CCCCEEEEEcCCCchHHHHHHHHc-CCCeEEEEEeCCHHHHHHHHHHHHHh---CCCc----------------------
Q 019802          240 KPGWKVLDACSAPGNKTVHLAALM-KGKGKIVACELNKERVRRLKDTIKLS---GAAN----------------------  293 (335)
Q Consensus       240 ~~g~~VLD~cagpG~kt~~la~~~-~~~g~i~a~D~~~~rl~~~~~~~~~~---g~~n----------------------  293 (335)
                      .++.+|||+|||+|..+..++..+ .+..+|+++|+|+.+++.+++++...   |+.+                      
T Consensus        50 ~~~~~vLD~gcGsG~~~~~la~~~~~~~~~v~gvDis~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  129 (250)
T 1o9g_A           50 DGPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAGLTARELERREQSERFGKPSYLEAAQ  129 (250)
T ss_dssp             CSCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHCCHHHHHHHH
T ss_pred             CCCCeEEECCCCCCHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHHHhhhccccccchhhhhhhhhcccccchhhhh
Confidence            467899999999999999999873 23478999999999999999999876   5533                      


Q ss_pred             ----EE-------------EEeccCCCCCC-----CCCCCceEEEEEEecccccc
Q 019802          294 ----IE-------------VLHGDFLNLDP-----KDPAYSEVSLIFCIFTWMII  326 (335)
Q Consensus       294 ----i~-------------~~~~D~~~~~~-----~~~~fd~V~~IllD~~cs~~  326 (335)
                          +.             +.++|+.+...     ....||.   |++++|....
T Consensus       130 ~~~~v~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~fD~---Iv~npp~~~~  181 (250)
T 1o9g_A          130 AARRLRERLTAEGGALPCAIRTADVFDPRALSAVLAGSAPDV---VLTDLPYGER  181 (250)
T ss_dssp             HHHHHHHHHHHTTSSCCEEEEECCTTCGGGHHHHHTTCCCSE---EEEECCGGGS
T ss_pred             hhhhhhhhccccccccccceeecccccccccccccCCCCceE---EEeCCCeecc
Confidence                66             99999987542     3346885   8889887543

>3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae}

Probab=98.73  E-value=3.7e-08  Score=89.62  Aligned_cols=79  Identities=20%  Similarity=0.185  Sum_probs=67.1

Q ss_pred             HHcCCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCceE
Q 019802          235 AALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEV  314 (335)
Q Consensus       235 ~~l~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~~~~~~fd~V  314 (335)
                      ..+...++.+|||+|||+|..+..++..   ..+|+++|+|+.+++.+++++...|+ ++.++++|+.+++. +.+||. 
T Consensus       114 ~~~~~~~~~~vLD~GcG~G~~~~~l~~~---g~~v~~vD~s~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~~-~~~fD~-  187 (286)
T 3m70_A          114 DAAKIISPCKVLDLGCGQGRNSLYLSLL---GYDVTSWDHNENSIAFLNETKEKENL-NISTALYDINAANI-QENYDF-  187 (286)
T ss_dssp             HHHHHSCSCEEEEESCTTCHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHTTC-CEEEEECCGGGCCC-CSCEEE-
T ss_pred             HHhhccCCCcEEEECCCCCHHHHHHHHC---CCeEEEEECCHHHHHHHHHHHHHcCC-ceEEEEeccccccc-cCCccE-
Confidence            3444558999999999999999999987   35999999999999999999999998 89999999998876 556775 


Q ss_pred             EEEEEec
Q 019802          315 SLIFCIF  321 (335)
Q Consensus       315 ~~IllD~  321 (335)
                        |++..
T Consensus       188 --i~~~~  192 (286)
T 3m70_A          188 --IVSTV  192 (286)
T ss_dssp             --EEECS
T ss_pred             --EEEcc
Confidence              55543

>2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A

Probab=98.73  E-value=4.2e-08  Score=87.61  Aligned_cols=73  Identities=14%  Similarity=0.134  Sum_probs=63.2

Q ss_pred             CCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCceE
Q 019802          238 APKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEV  314 (335)
Q Consensus       238 ~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~~~~~~fd~V  314 (335)
                      .+.++.+|||+|||+|..+..+++.   ..+|+++|+|+.+++.+++++ ..+..++.+.++|+.+++..+++||.|
T Consensus        36 ~~~~~~~vLDiG~G~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~~-~~~~~~~~~~~~d~~~~~~~~~~fD~v  108 (263)
T 2yqz_A           36 PKGEEPVFLELGVGTGRIALPLIAR---GYRYIALDADAAMLEVFRQKI-AGVDRKVQVVQADARAIPLPDESVHGV  108 (263)
T ss_dssp             CSSSCCEEEEETCTTSTTHHHHHTT---TCEEEEEESCHHHHHHHHHHT-TTSCTTEEEEESCTTSCCSCTTCEEEE
T ss_pred             CCCCCCEEEEeCCcCCHHHHHHHHC---CCEEEEEECCHHHHHHHHHHh-hccCCceEEEEcccccCCCCCCCeeEE
Confidence            5678899999999999999999876   479999999999999999998 445568999999999988777778764

>1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46

Probab=98.72  E-value=9.5e-09  Score=85.66  Aligned_cols=77  Identities=19%  Similarity=0.242  Sum_probs=64.2

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCC----CCCCceEEE
Q 019802          241 PGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPK----DPAYSEVSL  316 (335)
Q Consensus       241 ~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~~~----~~~fd~V~~  316 (335)
                      ++.+|||+|||+|..+..++.. +  ..|+++|+|+.+++.++++++..++ +++++++|+.+..+.    ..+||   .
T Consensus        41 ~~~~vLD~GcG~G~~~~~l~~~-~--~~v~~vD~~~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~~~D---~  113 (171)
T 1ws6_A           41 RRGRFLDPFAGSGAVGLEAASE-G--WEAVLVEKDPEAVRLLKENVRRTGL-GARVVALPVEVFLPEAKAQGERFT---V  113 (171)
T ss_dssp             TCCEEEEETCSSCHHHHHHHHT-T--CEEEEECCCHHHHHHHHHHHHHHTC-CCEEECSCHHHHHHHHHHTTCCEE---E
T ss_pred             CCCeEEEeCCCcCHHHHHHHHC-C--CeEEEEeCCHHHHHHHHHHHHHcCC-ceEEEeccHHHHHHhhhccCCceE---E
Confidence            7889999999999999999987 2  2499999999999999999999998 899999999874221    12454   6


Q ss_pred             EEEecccc
Q 019802          317 IFCIFTWM  324 (335)
Q Consensus       317 IllD~~cs  324 (335)
                      |++|+|..
T Consensus       114 i~~~~~~~  121 (171)
T 1ws6_A          114 AFMAPPYA  121 (171)
T ss_dssp             EEECCCTT
T ss_pred             EEECCCCc
Confidence            89998765

>2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45

Probab=98.72  E-value=1.5e-08  Score=98.76  Aligned_cols=104  Identities=16%  Similarity=0.157  Sum_probs=84.3

Q ss_pred             cceEEecCchHHHHHHHcCCCCCCEEEEEcCCCchHHHHHHHHcC------------CCeEEEEEeCCHHHHHHHHHHHH
Q 019802          220 NGCVFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMK------------GKGKIVACELNKERVRRLKDTIK  287 (335)
Q Consensus       220 ~g~~~iQd~~s~l~~~~l~~~~g~~VLD~cagpG~kt~~la~~~~------------~~g~i~a~D~~~~rl~~~~~~~~  287 (335)
                      .|.|+--..-+.+++..+.+.++.+|||.|||+|+....+++.+.            ....++++|+++.+++.++.|+.
T Consensus       150 ~G~fyTP~~v~~~mv~~l~~~~~~~VlDpacGsG~fl~~~~~~l~~~~~~~~~~~~~~~~~i~G~Ei~~~~~~lA~~nl~  229 (445)
T 2okc_A          150 AGQYFTPRPLIQAMVDCINPQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLY  229 (445)
T ss_dssp             CGGGCCCHHHHHHHHHHHCCCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHH
T ss_pred             CCcccCcHHHHHHHHHHhCCCCCCEEeccCCCcchHHHHHHHHHHHhcCCHHHHHhhcCeEEEEEeCCHHHHHHHHHHHH
Confidence            455554445567788888999999999999999999999988752            13579999999999999999999


Q ss_pred             HhCCC--cEEEEeccCCCCCCCCCCCceEEEEEEeccccccc
Q 019802          288 LSGAA--NIEVLHGDFLNLDPKDPAYSEVSLIFCIFTWMIIM  327 (335)
Q Consensus       288 ~~g~~--ni~~~~~D~~~~~~~~~~fd~V~~IllD~~cs~~g  327 (335)
                      ..|+.  ++.+.++|+...+...    .++.|+.+||.++..
T Consensus       230 l~g~~~~~~~i~~gD~l~~~~~~----~fD~Iv~NPPf~~~~  267 (445)
T 2okc_A          230 LHGIGTDRSPIVCEDSLEKEPST----LVDVILANPPFGTRP  267 (445)
T ss_dssp             HTTCCSSCCSEEECCTTTSCCSS----CEEEEEECCCSSCCC
T ss_pred             HhCCCcCCCCEeeCCCCCCcccC----CcCEEEECCCCCCcc
Confidence            98986  6889999998766432    455699999998754

>1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43

Probab=98.72  E-value=6.8e-08  Score=84.29  Aligned_cols=76  Identities=22%  Similarity=0.318  Sum_probs=64.1

Q ss_pred             CCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCceEEEEEE
Q 019802          240 KPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVSLIFC  319 (335)
Q Consensus       240 ~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~~~~~~fd~V~~Ill  319 (335)
                      .++.+|||+|||+|..+..++...   .+|+++|+|+.+++.++++++..+ .+++++++|+.+++..+.+||.   |++
T Consensus        37 ~~~~~vLDlG~G~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~~~~~~-~~~~~~~~d~~~~~~~~~~~D~---v~~  109 (227)
T 1ve3_A           37 KKRGKVLDLACGVGGFSFLLEDYG---FEVVGVDISEDMIRKAREYAKSRE-SNVEFIVGDARKLSFEDKTFDY---VIF  109 (227)
T ss_dssp             CSCCEEEEETCTTSHHHHHHHHTT---CEEEEEESCHHHHHHHHHHHHHTT-CCCEEEECCTTSCCSCTTCEEE---EEE
T ss_pred             CCCCeEEEEeccCCHHHHHHHHcC---CEEEEEECCHHHHHHHHHHHHhcC-CCceEEECchhcCCCCCCcEEE---EEE
Confidence            458899999999999999998862   289999999999999999999887 6899999999988766666775   555


Q ss_pred             ecc
Q 019802          320 IFT  322 (335)
Q Consensus       320 D~~  322 (335)
                      ..+
T Consensus       110 ~~~  112 (227)
T 1ve3_A          110 IDS  112 (227)
T ss_dssp             ESC
T ss_pred             cCc
Confidence            433

>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana}

Probab=98.71  E-value=3.6e-08  Score=101.08  Aligned_cols=84  Identities=10%  Similarity=0.149  Sum_probs=70.8

Q ss_pred             HHHHcCCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHh------CCCcEEEEeccCCCCCC
Q 019802          233 VAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLS------GAANIEVLHGDFLNLDP  306 (335)
Q Consensus       233 ~~~~l~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~------g~~ni~~~~~D~~~~~~  306 (335)
                      +...+...++.+|||+|||+|..+..|++..++..+|+++|+|+.+++.++++++..      |+.+|+++++|+.++++
T Consensus       713 LLelL~~~~g~rVLDVGCGTG~lai~LAr~g~p~a~VtGVDIS~emLe~AReRLa~~lnAkr~gl~nVefiqGDa~dLp~  792 (950)
T 3htx_A          713 ALKHIRESSASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVKLNKEACNVKSATLYDGSILEFDS  792 (950)
T ss_dssp             HHHHHHHSCCSEEEEETCSSSHHHHHHTSSCCCCCEEEEEESCHHHHHHHHHHHHHHTTTTCSSCSEEEEEESCTTSCCT
T ss_pred             HHHHhcccCCCEEEEECCCCCHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhccchhhcCCCceEEEECchHhCCc
Confidence            344555668999999999999999999887544479999999999999999987753      66789999999999998


Q ss_pred             CCCCCceEEE
Q 019802          307 KDPAYSEVSL  316 (335)
Q Consensus       307 ~~~~fd~V~~  316 (335)
                      .+..||.|.+
T Consensus       793 ~d~sFDlVV~  802 (950)
T 3htx_A          793 RLHDVDIGTC  802 (950)
T ss_dssp             TSCSCCEEEE
T ss_pred             ccCCeeEEEE
Confidence            8888997544

>3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi}

Probab=98.71  E-value=1.2e-08  Score=85.96  Aligned_cols=81  Identities=17%  Similarity=0.171  Sum_probs=63.1

Q ss_pred             CchHHHHHHHcCC--CCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCC
Q 019802          227 GKASSMVAAALAP--KPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNL  304 (335)
Q Consensus       227 d~~s~l~~~~l~~--~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~  304 (335)
                      .+.+..+...+..  .++.+|||+|||+|..+..++...    +|+++|+|+.+++.         ..+++++++|+.+ 
T Consensus         7 ~~~~~~l~~~l~~~~~~~~~vLD~GcG~G~~~~~l~~~~----~v~gvD~s~~~~~~---------~~~~~~~~~d~~~-   72 (170)
T 3q87_B            7 GEDTYTLMDALEREGLEMKIVLDLGTSTGVITEQLRKRN----TVVSTDLNIRALES---------HRGGNLVRADLLC-   72 (170)
T ss_dssp             CHHHHHHHHHHHHHTCCSCEEEEETCTTCHHHHHHTTTS----EEEEEESCHHHHHT---------CSSSCEEECSTTT-
T ss_pred             CccHHHHHHHHHhhcCCCCeEEEeccCccHHHHHHHhcC----cEEEEECCHHHHhc---------ccCCeEEECChhh-
Confidence            3445555555655  678899999999999999998762    99999999999988         3568999999988 


Q ss_pred             CCCCCCCceEEEEEEecccc
Q 019802          305 DPKDPAYSEVSLIFCIFTWM  324 (335)
Q Consensus       305 ~~~~~~fd~V~~IllD~~cs  324 (335)
                      +..+++||.   |++++|..
T Consensus        73 ~~~~~~fD~---i~~n~~~~   89 (170)
T 3q87_B           73 SINQESVDV---VVFNPPYV   89 (170)
T ss_dssp             TBCGGGCSE---EEECCCCB
T ss_pred             hcccCCCCE---EEECCCCc
Confidence            334467885   77787754

>2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A*

Probab=98.71  E-value=5.3e-08  Score=91.46  Aligned_cols=82  Identities=16%  Similarity=0.161  Sum_probs=68.0

Q ss_pred             HHHcCCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCC-CcEEEEeccCCCCCCCCCCCc
Q 019802          234 AAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGA-ANIEVLHGDFLNLDPKDPAYS  312 (335)
Q Consensus       234 ~~~l~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~-~ni~~~~~D~~~~~~~~~~fd  312 (335)
                      ...+...++.+|||+|||+|..+..+++.  +..+|+++|+++ +++.++++++..|+ .+|+++++|+.+++.++++||
T Consensus        57 ~~~~~~~~~~~VLDiGcGtG~ls~~la~~--g~~~v~gvD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D  133 (340)
T 2fyt_A           57 YQNPHIFKDKVVLDVGCGTGILSMFAAKA--GAKKVLGVDQSE-ILYQAMDIIRLNKLEDTITLIKGKIEEVHLPVEKVD  133 (340)
T ss_dssp             HHCGGGTTTCEEEEETCTTSHHHHHHHHT--TCSEEEEEESST-HHHHHHHHHHHTTCTTTEEEEESCTTTSCCSCSCEE
T ss_pred             HhhhhhcCCCEEEEeeccCcHHHHHHHHc--CCCEEEEEChHH-HHHHHHHHHHHcCCCCcEEEEEeeHHHhcCCCCcEE
Confidence            33455678999999999999999999886  346999999996 99999999999998 689999999999876655666


Q ss_pred             eEEEEEEec
Q 019802          313 EVSLIFCIF  321 (335)
Q Consensus       313 ~V~~IllD~  321 (335)
                      .   |+++.
T Consensus       134 ~---Ivs~~  139 (340)
T 2fyt_A          134 V---IISEW  139 (340)
T ss_dssp             E---EEECC
T ss_pred             E---EEEcC
Confidence            4   66553

>3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B*

Probab=98.71  E-value=2.2e-08  Score=90.12  Aligned_cols=95  Identities=21%  Similarity=0.230  Sum_probs=74.5

Q ss_pred             EEecCchHHHHHHHcCCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCC
Q 019802          223 VFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFL  302 (335)
Q Consensus       223 ~~iQd~~s~l~~~~l~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~  302 (335)
                      |.++..-...+...+++.++++|||+|||+|..|..+++.  +..+|+++|+|+.+++.++++    +..+++++++|+.
T Consensus        13 fl~d~~i~~~iv~~~~~~~~~~VLDiG~G~G~lt~~L~~~--~~~~v~avEid~~~~~~~~~~----~~~~v~~i~~D~~   86 (249)
T 3ftd_A           13 LLVSEGVLKKIAEELNIEEGNTVVEVGGGTGNLTKVLLQH--PLKKLYVIELDREMVENLKSI----GDERLEVINEDAS   86 (249)
T ss_dssp             CEECHHHHHHHHHHTTCCTTCEEEEEESCHHHHHHHHTTS--CCSEEEEECCCHHHHHHHTTS----CCTTEEEECSCTT
T ss_pred             ccCCHHHHHHHHHhcCCCCcCEEEEEcCchHHHHHHHHHc--CCCeEEEEECCHHHHHHHHhc----cCCCeEEEEcchh
Confidence            3444444555667788889999999999999999999876  247999999999999999988    3458999999999


Q ss_pred             CCCCCCCCCceEEEEEEeccccc
Q 019802          303 NLDPKDPAYSEVSLIFCIFTWMI  325 (335)
Q Consensus       303 ~~~~~~~~fd~V~~IllD~~cs~  325 (335)
                      +++..+. ++. ..|+.++|...
T Consensus        87 ~~~~~~~-~~~-~~vv~NlPy~i  107 (249)
T 3ftd_A           87 KFPFCSL-GKE-LKVVGNLPYNV  107 (249)
T ss_dssp             TCCGGGS-CSS-EEEEEECCTTT
T ss_pred             hCChhHc-cCC-cEEEEECchhc
Confidence            9886542 222 25777888753

>2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A*

Probab=98.71  E-value=7.7e-09  Score=92.16  Aligned_cols=93  Identities=15%  Similarity=0.138  Sum_probs=68.5

Q ss_pred             eEEec-CchHHHHHHHcCCCCCCEEEEEcCCCchHHHHHHHH---cCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEE
Q 019802          222 CVFLQ-GKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAAL---MKGKGKIVACELNKERVRRLKDTIKLSGAANIEVL  297 (335)
Q Consensus       222 ~~~iQ-d~~s~l~~~~l~~~~g~~VLD~cagpG~kt~~la~~---~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~  297 (335)
                      ....| .....++..++...++.+|||+|||+|+.|..+++.   +.+.++|+++|+++.+++.++    .++ .+|+++
T Consensus        61 ~~~~~~p~~~~~l~~~l~~~~~~~VLDiG~GtG~~t~~la~~~~~~~~~~~V~gvD~s~~~l~~a~----~~~-~~v~~~  135 (236)
T 2bm8_A           61 LRMLKDPDTQAVYHDMLWELRPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPA----SDM-ENITLH  135 (236)
T ss_dssp             EECCSCHHHHHHHHHHHHHHCCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCG----GGC-TTEEEE
T ss_pred             ccccCCHHHHHHHHHHHHhcCCCEEEEEeCCCCHHHHHHHHhhhhcCCCCEEEEEeCChHHHHHHh----ccC-CceEEE
Confidence            33444 223344445555556789999999999999999998   566789999999999998876    222 579999


Q ss_pred             eccCCCC---CC-CCCCCceEEEEEEecc
Q 019802          298 HGDFLNL---DP-KDPAYSEVSLIFCIFT  322 (335)
Q Consensus       298 ~~D~~~~---~~-~~~~fd~V~~IllD~~  322 (335)
                      ++|+.++   +. ...+||.   |++|..
T Consensus       136 ~gD~~~~~~l~~~~~~~fD~---I~~d~~  161 (236)
T 2bm8_A          136 QGDCSDLTTFEHLREMAHPL---IFIDNA  161 (236)
T ss_dssp             ECCSSCSGGGGGGSSSCSSE---EEEESS
T ss_pred             ECcchhHHHHHhhccCCCCE---EEECCc
Confidence            9999885   43 2336886   777754

>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A*

Probab=98.71  E-value=9.3e-08  Score=82.79  Aligned_cols=76  Identities=22%  Similarity=0.286  Sum_probs=62.9

Q ss_pred             HHHHHHcCCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCC
Q 019802          231 SMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPA  310 (335)
Q Consensus       231 ~l~~~~l~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~~~~~~  310 (335)
                      .+...+....++.+|||+|||+|..+..++..   ..+|+++|+++.+++.+++    .|..++.++++|+.++ ..+++
T Consensus        36 ~~~~~l~~~~~~~~vLdiG~G~G~~~~~l~~~---~~~v~~~D~s~~~~~~a~~----~~~~~~~~~~~d~~~~-~~~~~  107 (218)
T 3ou2_A           36 AALERLRAGNIRGDVLELASGTGYWTRHLSGL---ADRVTALDGSAEMIAEAGR----HGLDNVEFRQQDLFDW-TPDRQ  107 (218)
T ss_dssp             HHHHHHTTTTSCSEEEEESCTTSHHHHHHHHH---SSEEEEEESCHHHHHHHGG----GCCTTEEEEECCTTSC-CCSSC
T ss_pred             HHHHHHhcCCCCCeEEEECCCCCHHHHHHHhc---CCeEEEEeCCHHHHHHHHh----cCCCCeEEEecccccC-CCCCc
Confidence            33343444678889999999999999999988   4699999999999999988    6777899999999988 55667


Q ss_pred             CceE
Q 019802          311 YSEV  314 (335)
Q Consensus       311 fd~V  314 (335)
                      ||.|
T Consensus       108 ~D~v  111 (218)
T 3ou2_A          108 WDAV  111 (218)
T ss_dssp             EEEE
T ss_pred             eeEE
Confidence            7753

>2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum}

Probab=98.71  E-value=3.3e-08  Score=84.98  Aligned_cols=56  Identities=20%  Similarity=0.201  Sum_probs=47.7

Q ss_pred             CCCCCEEEEEcCCCchHHHHHHHHcCC-CeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCC
Q 019802          239 PKPGWKVLDACSAPGNKTVHLAALMKG-KGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLD  305 (335)
Q Consensus       239 ~~~g~~VLD~cagpG~kt~~la~~~~~-~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~  305 (335)
                      ++++.+|||+|||||+.+.++++.+++ .++|+++|+++..           ...+++++++|+.+.+
T Consensus        20 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~-----------~~~~v~~~~~d~~~~~   76 (201)
T 2plw_A           20 LKKNKIILDIGCYPGSWCQVILERTKNYKNKIIGIDKKIMD-----------PIPNVYFIQGEIGKDN   76 (201)
T ss_dssp             CCTTEEEEEESCTTCHHHHHHHHHTTTSCEEEEEEESSCCC-----------CCTTCEEEECCTTTTS
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHHHcCCCCceEEEEeCCccC-----------CCCCceEEEccccchh
Confidence            578899999999999999999998763 6899999999831           3457899999998875

>3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=98.70  E-value=1.4e-08  Score=90.45  Aligned_cols=84  Identities=14%  Similarity=0.047  Sum_probs=67.9

Q ss_pred             CCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCC--CCCCCCceEEE
Q 019802          239 PKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLD--PKDPAYSEVSL  316 (335)
Q Consensus       239 ~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~--~~~~~fd~V~~  316 (335)
                      ..+|.+|||+|||+|..+.++++..  ..+++++|+|+.+++.++++.+..+. ++.++.+|+..+.  ..+.+||.   
T Consensus        58 ~~~G~rVLdiG~G~G~~~~~~~~~~--~~~v~~id~~~~~~~~a~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~FD~---  131 (236)
T 3orh_A           58 SSKGGRVLEVGFGMAIAASKVQEAP--IDEHWIIECNDGVFQRLRDWAPRQTH-KVIPLKGLWEDVAPTLPDGHFDG---  131 (236)
T ss_dssp             TTTCEEEEEECCTTSHHHHHHTTSC--EEEEEEEECCHHHHHHHHHHGGGCSS-EEEEEESCHHHHGGGSCTTCEEE---
T ss_pred             ccCCCeEEEECCCccHHHHHHHHhC--CcEEEEEeCCHHHHHHHHHHHhhCCC-ceEEEeehHHhhcccccccCCce---
Confidence            4689999999999999999998752  35899999999999999999988775 6889999987653  45667875   


Q ss_pred             EEEecccccccc
Q 019802          317 IFCIFTWMIIMF  328 (335)
Q Consensus       317 IllD~~cs~~g~  328 (335)
                      |++|+..+....
T Consensus       132 i~~D~~~~~~~~  143 (236)
T 3orh_A          132 ILYDTYPLSEET  143 (236)
T ss_dssp             EEECCCCCBGGG
T ss_pred             EEEeeeecccch
Confidence            788876554443

>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*

Probab=98.70  E-value=2.4e-08  Score=90.87  Aligned_cols=92  Identities=18%  Similarity=0.210  Sum_probs=73.0

Q ss_pred             EecCchHHHHHHHcCCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCC
Q 019802          224 FLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLN  303 (335)
Q Consensus       224 ~iQd~~s~l~~~~l~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~  303 (335)
                      .++..-...++..+++.++ +|||+|||+|..|..+++.   .++|+|+|+|+.+++.+++++.  + .+++++++|+.+
T Consensus        30 L~d~~i~~~Iv~~~~~~~~-~VLEIG~G~G~lt~~L~~~---~~~V~avEid~~~~~~l~~~~~--~-~~v~vi~~D~l~  102 (271)
T 3fut_A           30 LVSEAHLRRIVEAARPFTG-PVFEVGPGLGALTRALLEA---GAEVTAIEKDLRLRPVLEETLS--G-LPVRLVFQDALL  102 (271)
T ss_dssp             ECCHHHHHHHHHHHCCCCS-CEEEECCTTSHHHHHHHHT---TCCEEEEESCGGGHHHHHHHTT--T-SSEEEEESCGGG
T ss_pred             cCCHHHHHHHHHhcCCCCC-eEEEEeCchHHHHHHHHHc---CCEEEEEECCHHHHHHHHHhcC--C-CCEEEEECChhh
Confidence            3333344556677888899 9999999999999999987   2689999999999999999876  2 589999999999


Q ss_pred             CCCCCC-CCceEEEEEEeccccc
Q 019802          304 LDPKDP-AYSEVSLIFCIFTWMI  325 (335)
Q Consensus       304 ~~~~~~-~fd~V~~IllD~~cs~  325 (335)
                      ++..+. .|+   .|+-++|..-
T Consensus       103 ~~~~~~~~~~---~iv~NlPy~i  122 (271)
T 3fut_A          103 YPWEEVPQGS---LLVANLPYHI  122 (271)
T ss_dssp             SCGGGSCTTE---EEEEEECSSC
T ss_pred             CChhhccCcc---EEEecCcccc
Confidence            876532 354   4777877653

>2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str}

Probab=98.69  E-value=4.4e-08  Score=87.36  Aligned_cols=82  Identities=13%  Similarity=0.130  Sum_probs=66.6

Q ss_pred             cCchHHHHHHHcCCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCC
Q 019802          226 QGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLD  305 (335)
Q Consensus       226 Qd~~s~l~~~~l~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~  305 (335)
                      |......+...+.+.++.+|||+|||+|..+..++...+ .++|+++|+|+.+++.++++     ..++.++++|+.+++
T Consensus        18 ~~~~~~~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~-~~~v~~~D~s~~~~~~a~~~-----~~~~~~~~~d~~~~~   91 (259)
T 2p35_A           18 RTRPARDLLAQVPLERVLNGYDLGCGPGNSTELLTDRYG-VNVITGIDSDDDMLEKAADR-----LPNTNFGKADLATWK   91 (259)
T ss_dssp             GGHHHHHHHTTCCCSCCSSEEEETCTTTHHHHHHHHHHC-TTSEEEEESCHHHHHHHHHH-----STTSEEEECCTTTCC
T ss_pred             HHHHHHHHHHhcCCCCCCEEEEecCcCCHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHh-----CCCcEEEECChhhcC
Confidence            444444455556677899999999999999999998863 47899999999999999988     357899999999987


Q ss_pred             CCCCCCceE
Q 019802          306 PKDPAYSEV  314 (335)
Q Consensus       306 ~~~~~fd~V  314 (335)
                       .+.+||.|
T Consensus        92 -~~~~fD~v   99 (259)
T 2p35_A           92 -PAQKADLL   99 (259)
T ss_dssp             -CSSCEEEE
T ss_pred             -ccCCcCEE
Confidence             56677753

>2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A

Probab=98.68  E-value=2.5e-08  Score=90.11  Aligned_cols=90  Identities=19%  Similarity=0.176  Sum_probs=71.4

Q ss_pred             hHHHHHHHcCCCCC--CEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhC--------C-CcEEEE
Q 019802          229 ASSMVAAALAPKPG--WKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSG--------A-ANIEVL  297 (335)
Q Consensus       229 ~s~l~~~~l~~~~g--~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g--------~-~ni~~~  297 (335)
                      ....+...+.+.+|  .+|||+|||.|..+..++.+   .++|+++|+++..++.+++++++.+        + .+++++
T Consensus        74 ~~e~l~~al~l~~g~~~~VLDl~~G~G~dal~lA~~---g~~V~~vE~~~~~~~l~~~~l~~a~~~~~~~~~l~~~i~~~  150 (258)
T 2oyr_A           74 RGEAVAKAVGIKGDYLPDVVDATAGLGRDAFVLASV---GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLI  150 (258)
T ss_dssp             GGSHHHHHTTCBTTBCCCEEETTCTTCHHHHHHHHH---TCCEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEE
T ss_pred             hHHHHHHHhcccCCCCCEEEEcCCcCCHHHHHHHHc---CCEEEEEECCHHHHHHHHHHHHHHHhhHhhhhhhhcCEEEE
Confidence            34556667777788  99999999999999999997   3579999999999999988887653        3 469999


Q ss_pred             eccCCCCCC-CCCCCceEEEEEEecccc
Q 019802          298 HGDFLNLDP-KDPAYSEVSLIFCIFTWM  324 (335)
Q Consensus       298 ~~D~~~~~~-~~~~fd~V~~IllD~~cs  324 (335)
                      ++|+.++.. ....||   .|++||+-.
T Consensus       151 ~~D~~~~L~~~~~~fD---vV~lDP~y~  175 (258)
T 2oyr_A          151 HASSLTALTDITPRPQ---VVYLDPMFP  175 (258)
T ss_dssp             ESCHHHHSTTCSSCCS---EEEECCCCC
T ss_pred             ECCHHHHHHhCcccCC---EEEEcCCCC
Confidence            999987432 222466   599999764

>3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis}

Probab=98.68  E-value=1.3e-08  Score=93.79  Aligned_cols=75  Identities=16%  Similarity=0.118  Sum_probs=65.0

Q ss_pred             CCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCc-EEEEeccCCCCCCCCCCCce
Q 019802          238 APKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAAN-IEVLHGDFLNLDPKDPAYSE  313 (335)
Q Consensus       238 ~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~n-i~~~~~D~~~~~~~~~~fd~  313 (335)
                      .+.++.+|||+|||+|..+..++....+.++|+++|+|+.+++.+++++...|+.+ ++++++|+.+++.. ++||.
T Consensus       115 ~l~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~-~~fD~  190 (305)
T 3ocj_A          115 HLRPGCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLAAGHALAGQITLHRQDAWKLDTR-EGYDL  190 (305)
T ss_dssp             HCCTTCEEEETTCTTCHHHHTSCCTTCTTCEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEECCGGGCCCC-SCEEE
T ss_pred             hCCCCCEEEEecCCCCHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHhcCCCCceEEEECchhcCCcc-CCeEE
Confidence            35789999999999999999986434556899999999999999999999999865 99999999998766 66775

>2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum}

Probab=98.68  E-value=7.5e-08  Score=83.00  Aligned_cols=75  Identities=16%  Similarity=0.146  Sum_probs=61.6

Q ss_pred             cCCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCceE
Q 019802          237 LAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEV  314 (335)
Q Consensus       237 l~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~~~~~~fd~V  314 (335)
                      ....++.+|||+|||+|..+..++..  ...+|+++|+|+.+++.+++++...+. ++.++++|+.+++..+.+||.|
T Consensus        19 ~~~~~~~~vLDiGcG~G~~~~~~~~~--~~~~v~~vD~s~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~~~~~~fD~v   93 (209)
T 2p8j_A           19 NESNLDKTVLDCGAGGDLPPLSIFVE--DGYKTYGIEISDLQLKKAENFSRENNF-KLNISKGDIRKLPFKDESMSFV   93 (209)
T ss_dssp             HHSSSCSEEEEESCCSSSCTHHHHHH--TTCEEEEEECCHHHHHHHHHHHHHHTC-CCCEEECCTTSCCSCTTCEEEE
T ss_pred             hccCCCCEEEEECCCCCHHHHHHHHh--CCCEEEEEECCHHHHHHHHHHHHhcCC-ceEEEECchhhCCCCCCceeEE
Confidence            34567899999999999986655544  246999999999999999999998774 6899999999988766778753

>3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413}

Probab=98.68  E-value=3e-08  Score=89.27  Aligned_cols=78  Identities=19%  Similarity=0.083  Sum_probs=65.1

Q ss_pred             HHHHHHHcCCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCC
Q 019802          230 SSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDP  309 (335)
Q Consensus       230 s~l~~~~l~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~~~~~  309 (335)
                      ...+...+.+.++.+|||+|||+|..+..+++   +..+|+++|+|+.+++.++++.      +++++++|+.+++..++
T Consensus        23 ~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~---~~~~v~gvD~s~~~~~~a~~~~------~~~~~~~d~~~~~~~~~   93 (261)
T 3ege_A           23 VNAIINLLNLPKGSVIADIGAGTGGYSVALAN---QGLFVYAVEPSIVMRQQAVVHP------QVEWFTGYAENLALPDK   93 (261)
T ss_dssp             HHHHHHHHCCCTTCEEEEETCTTSHHHHHHHT---TTCEEEEECSCHHHHHSSCCCT------TEEEECCCTTSCCSCTT
T ss_pred             HHHHHHHhCCCCCCEEEEEcCcccHHHHHHHh---CCCEEEEEeCCHHHHHHHHhcc------CCEEEECchhhCCCCCC
Confidence            34455667778899999999999999999986   3579999999999998776654      79999999999888778


Q ss_pred             CCceEEE
Q 019802          310 AYSEVSL  316 (335)
Q Consensus       310 ~fd~V~~  316 (335)
                      +||.|.+
T Consensus        94 ~fD~v~~  100 (261)
T 3ege_A           94 SVDGVIS  100 (261)
T ss_dssp             CBSEEEE
T ss_pred             CEeEEEE
Confidence            8997533

>2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A*

Probab=98.68  E-value=4.2e-08  Score=88.31  Aligned_cols=75  Identities=15%  Similarity=0.239  Sum_probs=60.5

Q ss_pred             cCCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHH-----------------hCCCcEEEEec
Q 019802          237 LAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKL-----------------SGAANIEVLHG  299 (335)
Q Consensus       237 l~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~-----------------~g~~ni~~~~~  299 (335)
                      +.+.++.+|||+|||+|..+..|++.   ..+|+++|+|+.+++.++++...                 ....+|+++++
T Consensus        64 ~~~~~~~~vLD~GCG~G~~~~~La~~---G~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  140 (252)
T 2gb4_A           64 LKGQSGLRVFFPLCGKAIEMKWFADR---GHTVVGVEISEIGIREFFAEQNLSYTEEPLAEIAGAKVFKSSSGSISLYCC  140 (252)
T ss_dssp             HTTCCSCEEEETTCTTCTHHHHHHHT---TCEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEES
T ss_pred             ccCCCCCeEEEeCCCCcHHHHHHHHC---CCeEEEEECCHHHHHHHHHhcccccccccccccccccccccCCCceEEEEC
Confidence            34568899999999999999999986   35899999999999999776531                 01257999999


Q ss_pred             cCCCCCCCC-CCCceE
Q 019802          300 DFLNLDPKD-PAYSEV  314 (335)
Q Consensus       300 D~~~~~~~~-~~fd~V  314 (335)
                      |+.++++.+ ++||.|
T Consensus       141 D~~~l~~~~~~~FD~V  156 (252)
T 2gb4_A          141 SIFDLPRANIGKFDRI  156 (252)
T ss_dssp             CTTTGGGGCCCCEEEE
T ss_pred             ccccCCcccCCCEEEE
Confidence            999988754 678853

>3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans}

Probab=98.68  E-value=7.9e-08  Score=84.55  Aligned_cols=68  Identities=15%  Similarity=0.217  Sum_probs=57.8

Q ss_pred             CCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccC-CCCCCC-CCCCceE
Q 019802          239 PKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDF-LNLDPK-DPAYSEV  314 (335)
Q Consensus       239 ~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~-~~~~~~-~~~fd~V  314 (335)
                      ..++.+|||+|||+|..+.++++.   ..+|+++|+|+.+++.++++     ..+++++++|+ ..++.. +.+||.|
T Consensus        46 ~~~~~~vLDiGcG~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~-----~~~~~~~~~d~~~~~~~~~~~~fD~v  115 (226)
T 3m33_A           46 LTPQTRVLEAGCGHGPDAARFGPQ---AARWAAYDFSPELLKLARAN-----APHADVYEWNGKGELPAGLGAPFGLI  115 (226)
T ss_dssp             CCTTCEEEEESCTTSHHHHHHGGG---SSEEEEEESCHHHHHHHHHH-----CTTSEEEECCSCSSCCTTCCCCEEEE
T ss_pred             CCCCCeEEEeCCCCCHHHHHHHHc---CCEEEEEECCHHHHHHHHHh-----CCCceEEEcchhhccCCcCCCCEEEE
Confidence            367899999999999999999887   46999999999999999988     45799999999 456655 6678764

>1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43

Probab=98.66  E-value=1.1e-07  Score=84.72  Aligned_cols=71  Identities=28%  Similarity=0.375  Sum_probs=61.5

Q ss_pred             CCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCce
Q 019802          238 APKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSE  313 (335)
Q Consensus       238 ~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~~~~~~fd~  313 (335)
                      ...++.+|||+|||+|..+..+++.   ..+|+++|+|+.+++.+++++...+. ++.++++|+.+++.. .+||.
T Consensus        38 ~~~~~~~vLDlGcG~G~~~~~l~~~---~~~v~gvD~s~~~l~~a~~~~~~~~~-~v~~~~~d~~~~~~~-~~fD~  108 (252)
T 1wzn_A           38 AKREVRRVLDLACGTGIPTLELAER---GYEVVGLDLHEEMLRVARRKAKERNL-KIEFLQGDVLEIAFK-NEFDA  108 (252)
T ss_dssp             CSSCCCEEEEETCTTCHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHTTC-CCEEEESCGGGCCCC-SCEEE
T ss_pred             cccCCCEEEEeCCCCCHHHHHHHHC---CCeEEEEECCHHHHHHHHHHHHhcCC-ceEEEECChhhcccC-CCccE
Confidence            3467889999999999999999886   36899999999999999999998887 699999999987754 45765

>1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A*

Probab=98.66  E-value=1e-07  Score=86.70  Aligned_cols=73  Identities=12%  Similarity=0.117  Sum_probs=63.1

Q ss_pred             CCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCC-CcEEEEeccCCCCCC-CCCCCce
Q 019802          239 PKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGA-ANIEVLHGDFLNLDP-KDPAYSE  313 (335)
Q Consensus       239 ~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~-~ni~~~~~D~~~~~~-~~~~fd~  313 (335)
                      +.++.+|||+|||+|..+..++..  +.++|+++|+|+.+++.+++++...|. .++.++++|+.+++. .+++||.
T Consensus        62 ~~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~  136 (298)
T 1ri5_A           62 TKRGDSVLDLGCGKGGDLLKYERA--GIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHMDLGKEFDV  136 (298)
T ss_dssp             CCTTCEEEEETCTTTTTHHHHHHH--TCSEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSCCCCSSCEEE
T ss_pred             CCCCCeEEEECCCCCHHHHHHHHC--CCCEEEEEECCHHHHHHHHHHHHhcCCCccEEEEECCccccccCCCCCcCE
Confidence            467899999999999999998876  346999999999999999999998887 469999999998876 4566775

>3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str}

Probab=98.66  E-value=7.7e-08  Score=85.75  Aligned_cols=76  Identities=16%  Similarity=0.106  Sum_probs=63.8

Q ss_pred             HHHcCCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCce
Q 019802          234 AAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSE  313 (335)
Q Consensus       234 ~~~l~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~~~~~~fd~  313 (335)
                      ...+...++.+|||+|||+|..+..+++..  ..+|+++|+|+.+++.+++++.   ..++.++++|+.+++..+.+||.
T Consensus        37 ~~~~~~~~~~~vLD~GcG~G~~~~~l~~~~--~~~v~~vD~s~~~~~~a~~~~~---~~~~~~~~~d~~~~~~~~~~fD~  111 (253)
T 3g5l_A           37 KKMLPDFNQKTVLDLGCGFGWHCIYAAEHG--AKKVLGIDLSERMLTEAKRKTT---SPVVCYEQKAIEDIAIEPDAYNV  111 (253)
T ss_dssp             HTTCCCCTTCEEEEETCTTCHHHHHHHHTT--CSEEEEEESCHHHHHHHHHHCC---CTTEEEEECCGGGCCCCTTCEEE
T ss_pred             HHhhhccCCCEEEEECCCCCHHHHHHHHcC--CCEEEEEECCHHHHHHHHHhhc---cCCeEEEEcchhhCCCCCCCeEE
Confidence            345556689999999999999999998872  2399999999999999998876   45799999999998877777886


Q ss_pred             E
Q 019802          314 V  314 (335)
Q Consensus       314 V  314 (335)
                      |
T Consensus       112 v  112 (253)
T 3g5l_A          112 V  112 (253)
T ss_dssp             E
T ss_pred             E
Confidence            4

>4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli}

Probab=98.66  E-value=6.6e-08  Score=87.91  Aligned_cols=71  Identities=18%  Similarity=0.385  Sum_probs=62.0

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCC-CcEEEEeccCCCCC-CCCCCCceE
Q 019802          241 PGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGA-ANIEVLHGDFLNLD-PKDPAYSEV  314 (335)
Q Consensus       241 ~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~-~ni~~~~~D~~~~~-~~~~~fd~V  314 (335)
                      ++.+|||+|||+|..+..++..   ..+|+++|+|+.+++.++++++..|+ .+++++++|+.+++ ..+.+||.|
T Consensus        68 ~~~~vLDiGcG~G~~~~~l~~~---~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v  140 (285)
T 4htf_A           68 QKLRVLDAGGGEGQTAIKMAER---GHQVILCDLSAQMIDRAKQAAEAKGVSDNMQFIHCAAQDVASHLETPVDLI  140 (285)
T ss_dssp             SCCEEEEETCTTCHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHC-CCGGGEEEEESCGGGTGGGCSSCEEEE
T ss_pred             CCCEEEEeCCcchHHHHHHHHC---CCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEEcCHHHhhhhcCCCceEE
Confidence            4789999999999999999987   46999999999999999999999998 68999999999987 456677763

>2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli}

Probab=98.65  E-value=5.2e-08  Score=91.53  Aligned_cols=91  Identities=20%  Similarity=0.288  Sum_probs=74.6

Q ss_pred             CchHHHHHHHcCCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCC
Q 019802          227 GKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDP  306 (335)
Q Consensus       227 d~~s~l~~~~l~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~~  306 (335)
                      |..+.++...+.+.++.+|||+|||+|..+..+++.. +..+|+++|+|+.+++.++++++..++. +.++.+|+.... 
T Consensus       182 d~~~~~ll~~l~~~~~~~VLDlGcG~G~~~~~la~~~-~~~~v~~vD~s~~~l~~a~~~~~~~~~~-~~~~~~d~~~~~-  258 (343)
T 2pjd_A          182 DVGSQLLLSTLTPHTKGKVLDVGCGAGVLSVAFARHS-PKIRLTLCDVSAPAVEASRATLAANGVE-GEVFASNVFSEV-  258 (343)
T ss_dssp             CHHHHHHHHHSCTTCCSBCCBTTCTTSHHHHHHHHHC-TTCBCEEEESBHHHHHHHHHHHHHTTCC-CEEEECSTTTTC-
T ss_pred             cHHHHHHHHhcCcCCCCeEEEecCccCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHhCCC-CEEEEccccccc-
Confidence            4457777777877788899999999999999999884 4569999999999999999999998885 678899987654 


Q ss_pred             CCCCCceEEEEEEecccc
Q 019802          307 KDPAYSEVSLIFCIFTWM  324 (335)
Q Consensus       307 ~~~~fd~V~~IllD~~cs  324 (335)
                       +++||   .|++++|..
T Consensus       259 -~~~fD---~Iv~~~~~~  272 (343)
T 2pjd_A          259 -KGRFD---MIISNPPFH  272 (343)
T ss_dssp             -CSCEE---EEEECCCCC
T ss_pred             -cCCee---EEEECCCcc
Confidence             34565   588887653

>2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42

Probab=98.64  E-value=4.8e-08  Score=86.61  Aligned_cols=71  Identities=13%  Similarity=0.136  Sum_probs=61.9

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCce
Q 019802          241 PGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSE  313 (335)
Q Consensus       241 ~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~~~~~~fd~  313 (335)
                      ++.+|||+|||+|..+..+++..  ..+|+++|+++.+++.+++++...|..++.++++|+.++++.+++||.
T Consensus        79 ~~~~vLDiGcG~G~~~~~l~~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~  149 (241)
T 2ex4_A           79 GTSCALDCGAGIGRITKRLLLPL--FREVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDFTPEPDSYDV  149 (241)
T ss_dssp             CCSEEEEETCTTTHHHHHTTTTT--CSEEEEEESCHHHHHHHHHHTGGGGGGEEEEEECCGGGCCCCSSCEEE
T ss_pred             CCCEEEEECCCCCHHHHHHHHhc--CCEEEEEeCCHHHHHHHHHHhhhcCCceEEEEEcChhhcCCCCCCEEE
Confidence            68899999999999999888764  469999999999999999999887656799999999988876667775

>1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42

Probab=98.64  E-value=8.5e-08  Score=85.25  Aligned_cols=76  Identities=14%  Similarity=0.065  Sum_probs=64.4

Q ss_pred             HHcCCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCceE
Q 019802          235 AALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEV  314 (335)
Q Consensus       235 ~~l~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~~~~~~fd~V  314 (335)
                      ..+...++.+|||+|||+|..+..+++..  ..+|+++|+++.+++.+++++...  .++.++++|+..++..+++||.|
T Consensus        87 ~~l~~~~~~~vLDiG~G~G~~~~~l~~~~--~~~v~~vD~s~~~~~~a~~~~~~~--~~~~~~~~d~~~~~~~~~~fD~v  162 (254)
T 1xtp_A           87 ASLPGHGTSRALDCGAGIGRITKNLLTKL--YATTDLLEPVKHMLEEAKRELAGM--PVGKFILASMETATLPPNTYDLI  162 (254)
T ss_dssp             HTSTTCCCSEEEEETCTTTHHHHHTHHHH--CSEEEEEESCHHHHHHHHHHTTTS--SEEEEEESCGGGCCCCSSCEEEE
T ss_pred             HhhcccCCCEEEEECCCcCHHHHHHHHhh--cCEEEEEeCCHHHHHHHHHHhccC--CceEEEEccHHHCCCCCCCeEEE
Confidence            34556688999999999999999999874  468999999999999999988755  57999999999988766778764

>3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei}

Probab=98.64  E-value=8.8e-08  Score=83.85  Aligned_cols=72  Identities=17%  Similarity=0.232  Sum_probs=63.5

Q ss_pred             CCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCC-----cEEEEeccCCCCCCCCCCCceE
Q 019802          240 KPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAA-----NIEVLHGDFLNLDPKDPAYSEV  314 (335)
Q Consensus       240 ~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~-----ni~~~~~D~~~~~~~~~~fd~V  314 (335)
                      +++.+|||+|||+|..+..++..   ..+|+++|+++.+++.+++++...++.     ++.+.++|+..++..+.+||.|
T Consensus        29 ~~~~~vLdiG~G~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v  105 (235)
T 3sm3_A           29 QEDDEILDIGCGSGKISLELASK---GYSVTGIDINSEAIRLAETAARSPGLNQKTGGKAEFKVENASSLSFHDSSFDFA  105 (235)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHT---TCEEEEEESCHHHHHHHHHHTTCCSCCSSSSCEEEEEECCTTSCCSCTTCEEEE
T ss_pred             CCCCeEEEECCCCCHHHHHHHhC---CCeEEEEECCHHHHHHHHHHHHhcCCccccCcceEEEEecccccCCCCCceeEE
Confidence            57899999999999999999987   469999999999999999999888763     6899999999988777778753

>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413}

Probab=98.64  E-value=7.1e-08  Score=87.47  Aligned_cols=74  Identities=18%  Similarity=0.269  Sum_probs=62.1

Q ss_pred             HHHHHcCCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCC
Q 019802          232 MVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAY  311 (335)
Q Consensus       232 l~~~~l~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~~~~~~f  311 (335)
                      .+...+.+.++.+|||+|||+|..+..+++   ..++|+++|+|+.+++.+++++     .++.+.++|+..+++ +++|
T Consensus        48 ~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~---~~~~v~gvD~s~~~~~~a~~~~-----~~~~~~~~d~~~~~~-~~~f  118 (279)
T 3ccf_A           48 DLLQLLNPQPGEFILDLGCGTGQLTEKIAQ---SGAEVLGTDNAATMIEKARQNY-----PHLHFDVADARNFRV-DKPL  118 (279)
T ss_dssp             HHHHHHCCCTTCEEEEETCTTSHHHHHHHH---TTCEEEEEESCHHHHHHHHHHC-----TTSCEEECCTTTCCC-SSCE
T ss_pred             HHHHHhCCCCCCEEEEecCCCCHHHHHHHh---CCCeEEEEECCHHHHHHHHhhC-----CCCEEEECChhhCCc-CCCc
Confidence            344567788899999999999999999988   3579999999999999998875     578899999999876 4567


Q ss_pred             ceE
Q 019802          312 SEV  314 (335)
Q Consensus       312 d~V  314 (335)
                      |.|
T Consensus       119 D~v  121 (279)
T 3ccf_A          119 DAV  121 (279)
T ss_dssp             EEE
T ss_pred             CEE
Confidence            753

>3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens}

Probab=98.63  E-value=9.6e-08  Score=87.60  Aligned_cols=49  Identities=18%  Similarity=0.274  Sum_probs=41.9

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhC
Q 019802          241 PGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSG  290 (335)
Q Consensus       241 ~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g  290 (335)
                      ++.+|||+|||+|..+..++..+++ .+|+++|+|+.+++.++++++..+
T Consensus        46 ~~~~VLDiGCG~G~~~~~la~~~~~-~~v~gvDis~~~i~~A~~~~~~~~   94 (292)
T 3g07_A           46 RGRDVLDLGCNVGHLTLSIACKWGP-SRMVGLDIDSRLIHSARQNIRHYL   94 (292)
T ss_dssp             TTSEEEEESCTTCHHHHHHHHHTCC-SEEEEEESCHHHHHHHHHTC----
T ss_pred             CCCcEEEeCCCCCHHHHHHHHHcCC-CEEEEECCCHHHHHHHHHHHHhhh
Confidence            6889999999999999999998754 699999999999999999987765

>3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A*

Probab=98.63  E-value=1.2e-07  Score=89.38  Aligned_cols=77  Identities=16%  Similarity=0.143  Sum_probs=66.0

Q ss_pred             CCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCc-EEEEeccCCCCCCCCCCCceEEEE
Q 019802          239 PKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAAN-IEVLHGDFLNLDPKDPAYSEVSLI  317 (335)
Q Consensus       239 ~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~n-i~~~~~D~~~~~~~~~~fd~V~~I  317 (335)
                      ..++.+|||+|||+|..+..+++.  +..+|+++|+| .+++.++++++..|+.+ |+++++|+.+++.++.+||.   |
T Consensus        64 ~~~~~~VLDvGcG~G~~~~~la~~--g~~~v~gvD~s-~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~---I  137 (349)
T 3q7e_A           64 LFKDKVVLDVGSGTGILCMFAAKA--GARKVIGIECS-SISDYAVKIVKANKLDHVVTIIKGKVEEVELPVEKVDI---I  137 (349)
T ss_dssp             HHTTCEEEEESCTTSHHHHHHHHT--TCSEEEEEECS-THHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSSCEEE---E
T ss_pred             cCCCCEEEEEeccchHHHHHHHHC--CCCEEEEECcH-HHHHHHHHHHHHcCCCCcEEEEECcHHHccCCCCceEE---E
Confidence            457899999999999999999987  45699999999 59999999999999876 99999999998766666764   6


Q ss_pred             EEec
Q 019802          318 FCIF  321 (335)
Q Consensus       318 llD~  321 (335)
                      ++++
T Consensus       138 is~~  141 (349)
T 3q7e_A          138 ISEW  141 (349)
T ss_dssp             EECC
T ss_pred             EEcc
Confidence            6654

>2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B*

Probab=98.62  E-value=2.8e-08  Score=99.02  Aligned_cols=105  Identities=15%  Similarity=0.112  Sum_probs=83.7

Q ss_pred             cceEEecCchHHHHHHHcCCCCCCEEEEEcCCCchHHHHHHHHcCCC-----------------eEEEEEeCCHHHHHHH
Q 019802          220 NGCVFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGK-----------------GKIVACELNKERVRRL  282 (335)
Q Consensus       220 ~g~~~iQd~~s~l~~~~l~~~~g~~VLD~cagpG~kt~~la~~~~~~-----------------g~i~a~D~~~~rl~~~  282 (335)
                      .|.|+--..-+.+++.++.+.++.+|+|.|||+|+....+++.+...                 ..++++|+++.+++.+
T Consensus       148 ~G~fyTP~~iv~~mv~~l~p~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~~~~i~GiEid~~~~~lA  227 (541)
T 2ar0_A          148 AGQYFTPRPLIKTIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLA  227 (541)
T ss_dssp             --CCCCCHHHHHHHHHHHCCCTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHH
T ss_pred             CCeeeCCHHHHHHHHHHhccCCCCeEecCCcccchHHHHHHHHHHHhhcccccCCHHHHhhhhcceEEEEcCCHHHHHHH
Confidence            46666555566778888999999999999999999999998876322                 3799999999999999


Q ss_pred             HHHHHHhCCCc-----EEEEeccCCCCCC-CCCCCceEEEEEEeccccccc
Q 019802          283 KDTIKLSGAAN-----IEVLHGDFLNLDP-KDPAYSEVSLIFCIFTWMIIM  327 (335)
Q Consensus       283 ~~~~~~~g~~n-----i~~~~~D~~~~~~-~~~~fd~V~~IllD~~cs~~g  327 (335)
                      +.|+...|+.+     +.+.++|+...+. ....   +++|+.+||.++..
T Consensus       228 ~~nl~l~gi~~~~~~~~~I~~gDtL~~~~~~~~~---fD~Vv~NPPf~~~~  275 (541)
T 2ar0_A          228 LMNCLLHDIEGNLDHGGAIRLGNTLGSDGENLPK---AHIVATNPPFGSAA  275 (541)
T ss_dssp             HHHHHTTTCCCBGGGTBSEEESCTTSHHHHTSCC---EEEEEECCCCTTCS
T ss_pred             HHHHHHhCCCccccccCCeEeCCCcccccccccC---CeEEEECCCccccc
Confidence            99999888876     7899999876542 2233   45699999998764

>3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A*

Probab=98.62  E-value=7.9e-08  Score=88.12  Aligned_cols=76  Identities=20%  Similarity=0.308  Sum_probs=63.3

Q ss_pred             HHHHcCCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCC---CcEEEEeccCCCCCCCCC
Q 019802          233 VAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGA---ANIEVLHGDFLNLDPKDP  309 (335)
Q Consensus       233 ~~~~l~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~---~ni~~~~~D~~~~~~~~~  309 (335)
                      +...+.+.++ +|||+|||+|..+..+++.   ..+|+++|+|+.+++.+++++...+.   .+++++++|+.+++. +.
T Consensus        75 ~~~~~~~~~~-~vLDlGcG~G~~~~~l~~~---~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~-~~  149 (299)
T 3g2m_A           75 FATRTGPVSG-PVLELAAGMGRLTFPFLDL---GWEVTALELSTSVLAAFRKRLAEAPADVRDRCTLVQGDMSAFAL-DK  149 (299)
T ss_dssp             HHHHHCCCCS-CEEEETCTTTTTHHHHHTT---TCCEEEEESCHHHHHHHHHHHHTSCHHHHTTEEEEECBTTBCCC-SC
T ss_pred             HHHhhCCCCC-cEEEEeccCCHHHHHHHHc---CCeEEEEECCHHHHHHHHHHHhhcccccccceEEEeCchhcCCc-CC
Confidence            3344554444 9999999999999999876   36899999999999999999998775   579999999999876 55


Q ss_pred             CCce
Q 019802          310 AYSE  313 (335)
Q Consensus       310 ~fd~  313 (335)
                      +||.
T Consensus       150 ~fD~  153 (299)
T 3g2m_A          150 RFGT  153 (299)
T ss_dssp             CEEE
T ss_pred             CcCE
Confidence            6775

>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian}

Probab=98.62  E-value=6.7e-08  Score=84.12  Aligned_cols=71  Identities=20%  Similarity=0.243  Sum_probs=61.3

Q ss_pred             HcCCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCceE
Q 019802          236 ALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEV  314 (335)
Q Consensus       236 ~l~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~~~~~~fd~V  314 (335)
                      .+.+.++.+|||+|||+|..+..+++.   ..+|+++|+++.+++.+++++.    .++.++++|+.+++.. ++||.|
T Consensus        40 ~~~~~~~~~vLDiGcG~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~~~----~~~~~~~~d~~~~~~~-~~fD~v  110 (220)
T 3hnr_A           40 DVVNKSFGNVLEFGVGTGNLTNKLLLA---GRTVYGIEPSREMRMIAKEKLP----KEFSITEGDFLSFEVP-TSIDTI  110 (220)
T ss_dssp             HHHHTCCSEEEEECCTTSHHHHHHHHT---TCEEEEECSCHHHHHHHHHHSC----TTCCEESCCSSSCCCC-SCCSEE
T ss_pred             HhhccCCCeEEEeCCCCCHHHHHHHhC---CCeEEEEeCCHHHHHHHHHhCC----CceEEEeCChhhcCCC-CCeEEE
Confidence            344568899999999999999999986   4699999999999999998866    5789999999998876 789864

>1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A*

Probab=98.60  E-value=4.1e-08  Score=81.64  Aligned_cols=76  Identities=26%  Similarity=0.386  Sum_probs=61.5

Q ss_pred             CCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCC--------CCCCC
Q 019802          239 PKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLD--------PKDPA  310 (335)
Q Consensus       239 ~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~--------~~~~~  310 (335)
                      +.++.+|||+|||+|..+..+++.+++..+++++|+++ +++          ..++.+.++|+.+.+        ..+.+
T Consensus        20 ~~~~~~vLd~G~G~G~~~~~l~~~~~~~~~v~~~D~~~-~~~----------~~~~~~~~~d~~~~~~~~~~~~~~~~~~   88 (180)
T 1ej0_A           20 FKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLP-MDP----------IVGVDFLQGDFRDELVMKALLERVGDSK   88 (180)
T ss_dssp             CCTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSC-CCC----------CTTEEEEESCTTSHHHHHHHHHHHTTCC
T ss_pred             CCCCCeEEEeCCCCCHHHHHHHHHhCCCCeEEEEECcc-ccc----------cCcEEEEEcccccchhhhhhhccCCCCc
Confidence            67899999999999999999999876668999999998 653          257999999998875        44455


Q ss_pred             CceEEEEEEecccccccc
Q 019802          311 YSEVSLIFCIFTWMIIMF  328 (335)
Q Consensus       311 fd~V~~IllD~~cs~~g~  328 (335)
                      ||   .|++++++...+.
T Consensus        89 ~D---~i~~~~~~~~~~~  103 (180)
T 1ej0_A           89 VQ---VVMSDMAPNMSGT  103 (180)
T ss_dssp             EE---EEEECCCCCCCSC
T ss_pred             ee---EEEECCCccccCC
Confidence            66   5888888765544

>4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans}

Probab=98.59  E-value=3.9e-08  Score=88.81  Aligned_cols=65  Identities=11%  Similarity=0.116  Sum_probs=56.2

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCceE
Q 019802          241 PGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEV  314 (335)
Q Consensus       241 ~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~~~~~~fd~V  314 (335)
                      .+.+|||+|||+|..+..|++.   ..+|+++|+|+.|++.+++      ..+|.++++|+++++..+++||.|
T Consensus        39 ~~~~vLDvGcGtG~~~~~l~~~---~~~v~gvD~s~~ml~~a~~------~~~v~~~~~~~e~~~~~~~sfD~v  103 (257)
T 4hg2_A           39 ARGDALDCGCGSGQASLGLAEF---FERVHAVDPGEAQIRQALR------HPRVTYAVAPAEDTGLPPASVDVA  103 (257)
T ss_dssp             CSSEEEEESCTTTTTHHHHHTT---CSEEEEEESCHHHHHTCCC------CTTEEEEECCTTCCCCCSSCEEEE
T ss_pred             CCCCEEEEcCCCCHHHHHHHHh---CCEEEEEeCcHHhhhhhhh------cCCceeehhhhhhhcccCCcccEE
Confidence            4679999999999999999876   3589999999999987653      357999999999999888889864

>3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana}

Probab=98.59  E-value=2e-07  Score=88.70  Aligned_cols=78  Identities=19%  Similarity=0.257  Sum_probs=66.3

Q ss_pred             cCCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCc-EEEEeccCCCCCCCCCCCceEE
Q 019802          237 LAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAAN-IEVLHGDFLNLDPKDPAYSEVS  315 (335)
Q Consensus       237 l~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~n-i~~~~~D~~~~~~~~~~fd~V~  315 (335)
                      +...++.+|||+|||+|..+..+++.  +..+|+++|+| .+++.++++++..|+.+ |+++++|+.+++.. ..||   
T Consensus        59 ~~~~~~~~VLDlGcGtG~ls~~la~~--g~~~V~gvD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~-~~~D---  131 (376)
T 3r0q_C           59 KHHFEGKTVLDVGTGSGILAIWSAQA--GARKVYAVEAT-KMADHARALVKANNLDHIVEVIEGSVEDISLP-EKVD---  131 (376)
T ss_dssp             TTTTTTCEEEEESCTTTHHHHHHHHT--TCSEEEEEESS-TTHHHHHHHHHHTTCTTTEEEEESCGGGCCCS-SCEE---
T ss_pred             cccCCCCEEEEeccCcCHHHHHHHhc--CCCEEEEEccH-HHHHHHHHHHHHcCCCCeEEEEECchhhcCcC-Ccce---
Confidence            45678999999999999999999987  34599999999 99999999999999865 99999999998765 4455   


Q ss_pred             EEEEec
Q 019802          316 LIFCIF  321 (335)
Q Consensus       316 ~IllD~  321 (335)
                      .|++++
T Consensus       132 ~Iv~~~  137 (376)
T 3r0q_C          132 VIISEW  137 (376)
T ss_dssp             EEEECC
T ss_pred             EEEEcC
Confidence            577765

>1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43

Probab=98.58  E-value=1.5e-07  Score=83.01  Aligned_cols=72  Identities=21%  Similarity=0.230  Sum_probs=62.1

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCceEEEEEEe
Q 019802          241 PGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVSLIFCI  320 (335)
Q Consensus       241 ~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~~~~~~fd~V~~IllD  320 (335)
                      ++.+|||+|||+|..+..+++.   ..+++++|+++.+++.+++++...+. ++.++++|+.+++.. .+||.   |++.
T Consensus        37 ~~~~vLdiG~G~G~~~~~l~~~---~~~~~~~D~s~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~~~-~~fD~---v~~~  108 (246)
T 1y8c_A           37 VFDDYLDLACGTGNLTENLCPK---FKNTWAVDLSQEMLSEAENKFRSQGL-KPRLACQDISNLNIN-RKFDL---ITCC  108 (246)
T ss_dssp             CTTEEEEETCTTSTTHHHHGGG---SSEEEEECSCHHHHHHHHHHHHHTTC-CCEEECCCGGGCCCS-CCEEE---EEEC
T ss_pred             CCCeEEEeCCCCCHHHHHHHHC---CCcEEEEECCHHHHHHHHHHHhhcCC-CeEEEecccccCCcc-CCceE---EEEc
Confidence            7889999999999999999876   35899999999999999999998887 799999999988765 55664   5553

>3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti}

Probab=98.58  E-value=1.5e-07  Score=83.06  Aligned_cols=78  Identities=14%  Similarity=0.146  Sum_probs=64.6

Q ss_pred             HHHHHcCCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCC
Q 019802          232 MVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAY  311 (335)
Q Consensus       232 l~~~~l~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~~~~~~f  311 (335)
                      .+...+...++.+|||+|||+|..+..++..  +..+++++|+|+.+++.++++...   .++.++++|+.+++..+.+|
T Consensus        34 ~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~--~~~~v~~vD~s~~~~~~a~~~~~~---~~~~~~~~d~~~~~~~~~~f  108 (243)
T 3bkw_A           34 ALRAMLPEVGGLRIVDLGCGFGWFCRWAHEH--GASYVLGLDLSEKMLARARAAGPD---TGITYERADLDKLHLPQDSF  108 (243)
T ss_dssp             HHHHHSCCCTTCEEEEETCTTCHHHHHHHHT--TCSEEEEEESCHHHHHHHHHTSCS---SSEEEEECCGGGCCCCTTCE
T ss_pred             HHHHhccccCCCEEEEEcCcCCHHHHHHHHC--CCCeEEEEcCCHHHHHHHHHhccc---CCceEEEcChhhccCCCCCc
Confidence            4566677778999999999999999999886  224999999999999999887653   36899999999887666778


Q ss_pred             ceE
Q 019802          312 SEV  314 (335)
Q Consensus       312 d~V  314 (335)
                      |.|
T Consensus       109 D~v  111 (243)
T 3bkw_A          109 DLA  111 (243)
T ss_dssp             EEE
T ss_pred             eEE
Confidence            764

>2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A*

Probab=98.57  E-value=6.1e-08  Score=93.09  Aligned_cols=96  Identities=19%  Similarity=0.172  Sum_probs=74.6

Q ss_pred             cceEEecCchHHHHHHHcCCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEec
Q 019802          220 NGCVFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHG  299 (335)
Q Consensus       220 ~g~~~iQd~~s~l~~~~l~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~  299 (335)
                      .|.|+-...-+..++..+.+.++.+|||+|||+|+.+..+++.++...+|+++|+++.+++.+         .++.++++
T Consensus        18 ~g~~~TP~~l~~~~~~~~~~~~~~~vLD~gcGtG~~~~~~~~~~~~~~~i~gvDi~~~~~~~a---------~~~~~~~~   88 (421)
T 2ih2_A           18 LGRVETPPEVVDFMVSLAEAPRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLP---------PWAEGILA   88 (421)
T ss_dssp             ---CCCCHHHHHHHHHHCCCCTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCC---------TTEEEEES
T ss_pred             CceEeCCHHHHHHHHHhhccCCCCEEEECCCCChHHHHHHHHHhCCCCeEEEEECCHHHHHhC---------CCCcEEeC
Confidence            355555555667777777776778999999999999999999875567999999999998776         47899999


Q ss_pred             cCCCCCCCCCCCceEEEEEEecccccccc
Q 019802          300 DFLNLDPKDPAYSEVSLIFCIFTWMIIMF  328 (335)
Q Consensus       300 D~~~~~~~~~~fd~V~~IllD~~cs~~g~  328 (335)
                      |+.+..+. ..|   |.|+++||+...+.
T Consensus        89 D~~~~~~~-~~f---D~Ii~NPPy~~~~~  113 (421)
T 2ih2_A           89 DFLLWEPG-EAF---DLILGNPPYGIVGE  113 (421)
T ss_dssp             CGGGCCCS-SCE---EEEEECCCCCCBSC
T ss_pred             ChhhcCcc-CCC---CEEEECcCccCccc
Confidence            99887542 345   56999999987654

>2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A

Probab=98.57  E-value=3.3e-07  Score=86.22  Aligned_cols=82  Identities=18%  Similarity=0.125  Sum_probs=66.6

Q ss_pred             HHHcCCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCC-CcEEEEeccCCCCCCCCCCCc
Q 019802          234 AAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGA-ANIEVLHGDFLNLDPKDPAYS  312 (335)
Q Consensus       234 ~~~l~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~-~ni~~~~~D~~~~~~~~~~fd  312 (335)
                      ...+...++.+|||+|||+|..+..+++.  +..+|+++|+++ +++.++++++..|+ .+|+++++|+.+++.. .+||
T Consensus        43 ~~~l~~~~~~~VLDiGcGtG~ls~~la~~--g~~~V~~vD~s~-~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~-~~~D  118 (348)
T 2y1w_A           43 LQNHTDFKDKIVLDVGCGSGILSFFAAQA--GARKIYAVEAST-MAQHAEVLVKSNNLTDRIVVIPGKVEEVSLP-EQVD  118 (348)
T ss_dssp             HHTGGGTTTCEEEEETCTTSHHHHHHHHT--TCSEEEEEECST-HHHHHHHHHHHTTCTTTEEEEESCTTTCCCS-SCEE
T ss_pred             HhccccCCcCEEEEcCCCccHHHHHHHhC--CCCEEEEECCHH-HHHHHHHHHHHcCCCCcEEEEEcchhhCCCC-Ccee
Confidence            34455678999999999999999998875  446999999996 89999999999998 6799999999987654 3455


Q ss_pred             eEEEEEEecc
Q 019802          313 EVSLIFCIFT  322 (335)
Q Consensus       313 ~V~~IllD~~  322 (335)
                         .|+++.+
T Consensus       119 ---~Ivs~~~  125 (348)
T 2y1w_A          119 ---IIISEPM  125 (348)
T ss_dssp             ---EEEECCC
T ss_pred             ---EEEEeCc
Confidence               5666543

>1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6

Probab=98.57  E-value=2e-07  Score=87.07  Aligned_cols=80  Identities=18%  Similarity=0.277  Sum_probs=65.9

Q ss_pred             cCCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCC-cEEEEeccCCCCCCCCCCCceEE
Q 019802          237 LAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAA-NIEVLHGDFLNLDPKDPAYSEVS  315 (335)
Q Consensus       237 l~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~-ni~~~~~D~~~~~~~~~~fd~V~  315 (335)
                      +...++.+|||+|||+|..+..+++.  +..+|+++|++ .+++.++++++..|+. +|+++++|+.+++.++.+||   
T Consensus        34 ~~~~~~~~VLDiGcGtG~ls~~la~~--g~~~v~~vD~s-~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D---  107 (328)
T 1g6q_1           34 KDLFKDKIVLDVGCGTGILSMFAAKH--GAKHVIGVDMS-SIIEMAKELVELNGFSDKITLLRGKLEDVHLPFPKVD---  107 (328)
T ss_dssp             HHHHTTCEEEEETCTTSHHHHHHHHT--CCSEEEEEESS-THHHHHHHHHHHTTCTTTEEEEESCTTTSCCSSSCEE---
T ss_pred             HhhcCCCEEEEecCccHHHHHHHHHC--CCCEEEEEChH-HHHHHHHHHHHHcCCCCCEEEEECchhhccCCCCccc---
Confidence            34467899999999999999988876  34699999999 6999999999999985 59999999999876545565   


Q ss_pred             EEEEecc
Q 019802          316 LIFCIFT  322 (335)
Q Consensus       316 ~IllD~~  322 (335)
                      .|+++++
T Consensus       108 ~Ivs~~~  114 (328)
T 1g6q_1          108 IIISEWM  114 (328)
T ss_dssp             EEEECCC
T ss_pred             EEEEeCc
Confidence            5776643

>1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31

Probab=98.57  E-value=2.8e-07  Score=89.06  Aligned_cols=83  Identities=22%  Similarity=0.140  Sum_probs=66.2

Q ss_pred             HHHcCCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHH-------HHHHHHhC--CCcEEEEeccCCCC
Q 019802          234 AAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRL-------KDTIKLSG--AANIEVLHGDFLNL  304 (335)
Q Consensus       234 ~~~l~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~-------~~~~~~~g--~~ni~~~~~D~~~~  304 (335)
                      ...+.+.+|++|||+|||+|..+..++...+ ..+|+++|+++.+++.+       +++++..|  +.||+++++|....
T Consensus       235 l~~l~l~~g~~VLDLGCGsG~la~~LA~~~g-~~~V~GVDis~~~l~~A~~Ml~~ar~~~~~~Gl~~~nV~~i~gD~~~~  313 (433)
T 1u2z_A          235 YQQCQLKKGDTFMDLGSGVGNCVVQAALECG-CALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSLKKSFVD  313 (433)
T ss_dssp             HHHTTCCTTCEEEEESCTTSHHHHHHHHHHC-CSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEESSCSTT
T ss_pred             HHhcCCCCCCEEEEeCCCcCHHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHhHHHHHHHHHHcCCCCCceEEEEcCcccc
Confidence            3456788999999999999999999999864 46899999999998888       99999999  57899999866432


Q ss_pred             C----CCCCCCceEEEEEEe
Q 019802          305 D----PKDPAYSEVSLIFCI  320 (335)
Q Consensus       305 ~----~~~~~fd~V~~IllD  320 (335)
                      +    .....||.   |++.
T Consensus       314 ~~~~~~~~~~FDv---Ivvn  330 (433)
T 1u2z_A          314 NNRVAELIPQCDV---ILVN  330 (433)
T ss_dssp             CHHHHHHGGGCSE---EEEC
T ss_pred             ccccccccCCCCE---EEEe
Confidence            1    11346886   5554

>3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli}

Probab=98.56  E-value=7.6e-08  Score=82.63  Aligned_cols=71  Identities=13%  Similarity=-0.042  Sum_probs=56.7

Q ss_pred             CCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCC-cEEEEeccCCCCCCCCCCCceE
Q 019802          240 KPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAA-NIEVLHGDFLNLDPKDPAYSEV  314 (335)
Q Consensus       240 ~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~-ni~~~~~D~~~~~~~~~~fd~V  314 (335)
                      .+.++|||+|||+|..+..++...+ ..+++|+|+|+.|++.+++|+.+.|+. ++.+  .|..... ....||.|
T Consensus        48 ~~~~~VLDlGCG~GplAl~l~~~~p-~a~~~A~Di~~~~leiar~~~~~~g~~~~v~~--~d~~~~~-~~~~~DvV  119 (200)
T 3fzg_A           48 KHVSSILDFGCGFNPLALYQWNENE-KIIYHAYDIDRAEIAFLSSIIGKLKTTIKYRF--LNKESDV-YKGTYDVV  119 (200)
T ss_dssp             CCCSEEEEETCTTHHHHHHHHCSSC-CCEEEEECSCHHHHHHHHHHHHHSCCSSEEEE--ECCHHHH-TTSEEEEE
T ss_pred             CCCCeEEEecCCCCHHHHHHHhcCC-CCEEEEEeCCHHHHHHHHHHHHhcCCCccEEE--ecccccC-CCCCcChh
Confidence            4578999999999999998877644 569999999999999999999999998 5666  5554433 23457753

>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*

Probab=98.56  E-value=1.6e-07  Score=96.31  Aligned_cols=106  Identities=16%  Similarity=0.212  Sum_probs=80.6

Q ss_pred             CcccccceEEecCc------hHHHHHHHcCCCCCCEEEEEcCCCchHHHHHHHHcC------------------------
Q 019802          215 HPLIVNGCVFLQGK------ASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMK------------------------  264 (335)
Q Consensus       215 ~~~~~~g~~~iQd~------~s~l~~~~l~~~~g~~VLD~cagpG~kt~~la~~~~------------------------  264 (335)
                      .++++.|+-..+..      -+..+..+..+.++..|||.|||+|+..+.++....                        
T Consensus       158 ~~LhkRgyr~~~~~apl~e~LAa~ll~~~~~~~~~~llDP~CGSGt~lIeAa~~a~~~apG~~R~~f~fe~w~~~~~~~w  237 (703)
T 3v97_A          158 DGLHLRGYRDRAGIAPIKETLAAAIVMRSGWQPGTPLLDPMCGSGTLLIEAAMLATDRAPGLHRGRWGFSGWAQHDEAIW  237 (703)
T ss_dssp             SCTTCCSSSCSSCCCSSCHHHHHHHHHHTTCCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCCTTTTBTTCCHHHH
T ss_pred             CccccccccccCCCCCCcHHHHHHHHHhhCCCCCCeEEecCCCCcHHHHHHHHHHhhcCCCCCccccchhhcccCCHHHH
Confidence            34555555433322      233344566778899999999999999998887531                        


Q ss_pred             -----------------CCeEEEEEeCCHHHHHHHHHHHHHhCCCc-EEEEeccCCCCCCCC--CCCceEEEEEEeccc
Q 019802          265 -----------------GKGKIVACELNKERVRRLKDTIKLSGAAN-IEVLHGDFLNLDPKD--PAYSEVSLIFCIFTW  323 (335)
Q Consensus       265 -----------------~~g~i~a~D~~~~rl~~~~~~~~~~g~~n-i~~~~~D~~~~~~~~--~~fd~V~~IllD~~c  323 (335)
                                       ...+|+++|+++.+++.+++|+++.|+.+ |.+.++|+.++..+.  +.||   .|++|||.
T Consensus       238 ~~~~~ea~~~~~~~~~~~~~~i~G~Did~~av~~A~~N~~~agv~~~i~~~~~D~~~~~~~~~~~~~d---~Iv~NPPY  313 (703)
T 3v97_A          238 QEVKAEAQTRARKGLAEYSSHFYGSDSDARVIQRARTNARLAGIGELITFEVKDVAQLTNPLPKGPYG---TVLSNPPY  313 (703)
T ss_dssp             HHHHHHHHHHHHHHHHHCCCCEEEEESCHHHHHHHHHHHHHTTCGGGEEEEECCGGGCCCSCTTCCCC---EEEECCCC
T ss_pred             HHHHHHHHHHhhhccccCCccEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhCccccccCCCC---EEEeCCCc
Confidence                             12589999999999999999999999976 999999999875432  2566   59999997

>2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus}

Probab=98.55  E-value=1.7e-07  Score=86.64  Aligned_cols=75  Identities=9%  Similarity=0.040  Sum_probs=55.6

Q ss_pred             CCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCC------cEEEEeccC------CCCC--
Q 019802          240 KPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAA------NIEVLHGDF------LNLD--  305 (335)
Q Consensus       240 ~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~------ni~~~~~D~------~~~~--  305 (335)
                      .+|.+|||+|||+|+.+..++..  +.++|+++|+|+.+++.++++....+..      ++.+.+.|+      .+++  
T Consensus        47 ~~~~~VLDlGCG~G~~l~~~~~~--~~~~v~GiD~S~~~l~~A~~~~~~~~~~~~~~~~~~~f~~~d~~~d~~~~~l~~~  124 (302)
T 2vdw_A           47 SNKRKVLAIDFGNGADLEKYFYG--EIALLVATDPDADAIARGNERYNKLNSGIKTKYYKFDYIQETIRSDTFVSSVREV  124 (302)
T ss_dssp             CSCCEEEETTCTTTTTHHHHHHT--TCSEEEEEESCHHHHHHHHHHHHHHCC----CCCEEEEEECCTTSSSHHHHHHTT
T ss_pred             CCCCeEEEEecCCcHhHHHHHhc--CCCeEEEEECCHHHHHHHHHHHHhccccccccccccchhhhhcccchhhhhhhcc
Confidence            35889999999999877766553  3468999999999999999999887753      366777777      2221  


Q ss_pred             CCCCCCceEEE
Q 019802          306 PKDPAYSEVSL  316 (335)
Q Consensus       306 ~~~~~fd~V~~  316 (335)
                      ..+++||.|.+
T Consensus       125 ~~~~~FD~V~~  135 (302)
T 2vdw_A          125 FYFGKFNIIDW  135 (302)
T ss_dssp             CCSSCEEEEEE
T ss_pred             ccCCCeeEEEE
Confidence            23457886543

>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis}

Probab=98.55  E-value=2e-07  Score=82.13  Aligned_cols=69  Identities=19%  Similarity=0.289  Sum_probs=60.2

Q ss_pred             CCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCceE
Q 019802          240 KPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEV  314 (335)
Q Consensus       240 ~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~~~~~~fd~V  314 (335)
                      .++.+|||+|||+|..+..+++.   ..+|+++|+++.+++.++++.   ...++.++++|+.+++..+.+||.|
T Consensus        52 ~~~~~vLDiG~G~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~~---~~~~~~~~~~d~~~~~~~~~~fD~v  120 (242)
T 3l8d_A           52 KKEAEVLDVGCGDGYGTYKLSRT---GYKAVGVDISEVMIQKGKERG---EGPDLSFIKGDLSSLPFENEQFEAI  120 (242)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHT---TCEEEEEESCHHHHHHHHTTT---CBTTEEEEECBTTBCSSCTTCEEEE
T ss_pred             CCCCeEEEEcCCCCHHHHHHHHc---CCeEEEEECCHHHHHHHHhhc---ccCCceEEEcchhcCCCCCCCccEE
Confidence            47889999999999999999987   468999999999999998874   3457999999999998777788864

>2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens}

Probab=98.54  E-value=1.8e-07  Score=80.62  Aligned_cols=75  Identities=9%  Similarity=0.026  Sum_probs=62.2

Q ss_pred             CCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCceEEEEEE
Q 019802          240 KPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVSLIFC  319 (335)
Q Consensus       240 ~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~~~~~~fd~V~~Ill  319 (335)
                      .++.+|||+|||+|..+..++.. +. .+|+++|+++.+++.+++++..  ..++.++++|+.+++..+++||.   |++
T Consensus        41 ~~~~~vLdiGcG~G~~~~~l~~~-~~-~~v~~~D~s~~~~~~a~~~~~~--~~~i~~~~~d~~~~~~~~~~fD~---v~~  113 (215)
T 2pxx_A           41 RPEDRILVLGCGNSALSYELFLG-GF-PNVTSVDYSSVVVAAMQACYAH--VPQLRWETMDVRKLDFPSASFDV---VLE  113 (215)
T ss_dssp             CTTCCEEEETCTTCSHHHHHHHT-TC-CCEEEEESCHHHHHHHHHHTTT--CTTCEEEECCTTSCCSCSSCEEE---EEE
T ss_pred             CCCCeEEEECCCCcHHHHHHHHc-CC-CcEEEEeCCHHHHHHHHHhccc--CCCcEEEEcchhcCCCCCCcccE---EEE
Confidence            67899999999999999999886 22 3899999999999999999874  45799999999998766666764   555


Q ss_pred             ec
Q 019802          320 IF  321 (335)
Q Consensus       320 D~  321 (335)
                      ..
T Consensus       114 ~~  115 (215)
T 2pxx_A          114 KG  115 (215)
T ss_dssp             ES
T ss_pred             Cc
Confidence            43

>3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides}

Probab=98.54  E-value=2.1e-07  Score=84.12  Aligned_cols=56  Identities=7%  Similarity=-0.041  Sum_probs=48.7

Q ss_pred             HHHHHHcCCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHh
Q 019802          231 SMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLS  289 (335)
Q Consensus       231 ~l~~~~l~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~  289 (335)
                      ..+...+.+.+|.+|||+|||+|..+..+++.   ..+|+++|+|+.|++.+++++...
T Consensus        35 ~~il~~l~l~~g~~VLDlGcGtG~~a~~La~~---g~~V~gvD~S~~ml~~Ar~~~~~~   90 (261)
T 3iv6_A           35 ENDIFLENIVPGSTVAVIGASTRFLIEKALER---GASVTVFDFSQRMCDDLAEALADR   90 (261)
T ss_dssp             HHHHHTTTCCTTCEEEEECTTCHHHHHHHHHT---TCEEEEEESCHHHHHHHHHHTSSS
T ss_pred             HHHHHhcCCCCcCEEEEEeCcchHHHHHHHhc---CCEEEEEECCHHHHHHHHHHHHhc
Confidence            34455678889999999999999999999986   368999999999999999998754

>1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A*

Probab=98.53  E-value=1.2e-07  Score=87.30  Aligned_cols=81  Identities=14%  Similarity=0.083  Sum_probs=62.8

Q ss_pred             CCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHh----CCCcEEEEeccCCCC-CCCCCCCceE
Q 019802          240 KPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLS----GAANIEVLHGDFLNL-DPKDPAYSEV  314 (335)
Q Consensus       240 ~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~----g~~ni~~~~~D~~~~-~~~~~~fd~V  314 (335)
                      ..+.+|||+|||+|+.+..+++.. +..+|+++|+++.+++.+++++..+    +..+++++++|+.+. +....+||  
T Consensus        89 ~~~~~VLdiG~G~G~~~~~l~~~~-~~~~v~~vDid~~~~~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD--  165 (296)
T 1inl_A           89 PNPKKVLIIGGGDGGTLREVLKHD-SVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFKNEFD--  165 (296)
T ss_dssp             SSCCEEEEEECTTCHHHHHHTTST-TCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGCSSCEE--
T ss_pred             CCCCEEEEEcCCcCHHHHHHHhcC-CCCEEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCce--
Confidence            345899999999999999998764 3579999999999999999998762    236799999998764 33334565  


Q ss_pred             EEEEEecccc
Q 019802          315 SLIFCIFTWM  324 (335)
Q Consensus       315 ~~IllD~~cs  324 (335)
                       .|++|+++.
T Consensus       166 -~Ii~d~~~~  174 (296)
T 1inl_A          166 -VIIIDSTDP  174 (296)
T ss_dssp             -EEEEEC---
T ss_pred             -EEEEcCCCc
Confidence             588898875

>3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15}

Probab=98.53  E-value=2.1e-07  Score=82.02  Aligned_cols=72  Identities=17%  Similarity=0.270  Sum_probs=60.7

Q ss_pred             CCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCceEEEEEE
Q 019802          240 KPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVSLIFC  319 (335)
Q Consensus       240 ~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~~~~~~fd~V~~Ill  319 (335)
                      .++.+|||+|||+|..+..++..    .+++++|+|+.+++.+++++...+ .++.++++|+.+++.. .+||.   |++
T Consensus        32 ~~~~~vLdiG~G~G~~~~~l~~~----~~v~~vD~s~~~~~~a~~~~~~~~-~~~~~~~~d~~~~~~~-~~fD~---v~~  102 (243)
T 3d2l_A           32 EPGKRIADIGCGTGTATLLLADH----YEVTGVDLSEEMLEIAQEKAMETN-RHVDFWVQDMRELELP-EPVDA---ITI  102 (243)
T ss_dssp             CTTCEEEEESCTTCHHHHHHTTT----SEEEEEESCHHHHHHHHHHHHHTT-CCCEEEECCGGGCCCS-SCEEE---EEE
T ss_pred             CCCCeEEEecCCCCHHHHHHhhC----CeEEEEECCHHHHHHHHHhhhhcC-CceEEEEcChhhcCCC-CCcCE---EEE
Confidence            45789999999999999988765    689999999999999999999887 4789999999887654 55664   555


Q ss_pred             e
Q 019802          320 I  320 (335)
Q Consensus       320 D  320 (335)
                      .
T Consensus       103 ~  103 (243)
T 3d2l_A          103 L  103 (243)
T ss_dssp             C
T ss_pred             e
Confidence            3

>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=98.52  E-value=1.4e-07  Score=81.04  Aligned_cols=65  Identities=25%  Similarity=0.296  Sum_probs=57.0

Q ss_pred             CCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCceE
Q 019802          242 GWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEV  314 (335)
Q Consensus       242 g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~~~~~~fd~V  314 (335)
                      +.+|||+|||+|..+..++..   ..+|+++|+++.+++.++++     ..++.++++|+.+++..+++||.|
T Consensus        42 ~~~vLDiGcG~G~~~~~l~~~---~~~v~gvD~s~~~~~~a~~~-----~~~~~~~~~d~~~~~~~~~~fD~v  106 (203)
T 3h2b_A           42 DGVILDVGSGTGRWTGHLASL---GHQIEGLEPATRLVELARQT-----HPSVTFHHGTITDLSDSPKRWAGL  106 (203)
T ss_dssp             CSCEEEETCTTCHHHHHHHHT---TCCEEEECCCHHHHHHHHHH-----CTTSEEECCCGGGGGGSCCCEEEE
T ss_pred             CCeEEEecCCCCHHHHHHHhc---CCeEEEEeCCHHHHHHHHHh-----CCCCeEEeCcccccccCCCCeEEE
Confidence            889999999999999999887   35899999999999999987     347899999999988777778863

>2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A*

Probab=98.52  E-value=1.1e-08  Score=94.81  Aligned_cols=78  Identities=14%  Similarity=0.149  Sum_probs=58.0

Q ss_pred             CCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeC----CHHHHHHHHHHHHHhCCCcEEEEec-cCCCCCCCCCCCce
Q 019802          239 PKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACEL----NKERVRRLKDTIKLSGAANIEVLHG-DFLNLDPKDPAYSE  313 (335)
Q Consensus       239 ~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~----~~~rl~~~~~~~~~~g~~ni~~~~~-D~~~~~~~~~~fd~  313 (335)
                      +++|.+|||+|||||+.|..++++    ++|+++|+    ++.+++.+  ..++.|.++|.++++ |+..++.  .+||.
T Consensus        80 ~~~g~~VLDlGcG~G~~s~~la~~----~~V~gvD~~~~~~~~~~~~~--~~~~~~~~~v~~~~~~D~~~l~~--~~fD~  151 (305)
T 2p41_A           80 VTPEGKVVDLGCGRGGWSYYCGGL----KNVREVKGLTKGGPGHEEPI--PMSTYGWNLVRLQSGVDVFFIPP--ERCDT  151 (305)
T ss_dssp             SCCCEEEEEETCTTSHHHHHHHTS----TTEEEEEEECCCSTTSCCCC--CCCSTTGGGEEEECSCCTTTSCC--CCCSE
T ss_pred             CCCCCEEEEEcCCCCHHHHHHHhc----CCEEEEeccccCchhHHHHH--HhhhcCCCCeEEEeccccccCCc--CCCCE
Confidence            467899999999999999999876    57999999    56544221  122234467999999 9988753  45774


Q ss_pred             EEEEEEecccccccc
Q 019802          314 VSLIFCIFTWMIIMF  328 (335)
Q Consensus       314 V~~IllD~~cs~~g~  328 (335)
                         |++|..|+ +|.
T Consensus       152 ---V~sd~~~~-~g~  162 (305)
T 2p41_A          152 ---LLCDIGES-SPN  162 (305)
T ss_dssp             ---EEECCCCC-CSS
T ss_pred             ---EEECCccc-cCc
Confidence               89999887 554

>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=98.51  E-value=5.7e-07  Score=76.06  Aligned_cols=72  Identities=17%  Similarity=0.160  Sum_probs=60.0

Q ss_pred             CCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCceEEEEE
Q 019802          239 PKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVSLIF  318 (335)
Q Consensus       239 ~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~~~~~~fd~V~~Il  318 (335)
                      +.++.+|||+|||+|..+..++..   ..+++++|+++.+++.+++++.     ++.++++|+.+++..+..||.   |+
T Consensus        44 ~~~~~~vLdiG~G~G~~~~~l~~~---~~~v~~~D~~~~~~~~a~~~~~-----~~~~~~~d~~~~~~~~~~~D~---i~  112 (195)
T 3cgg_A           44 APRGAKILDAGCGQGRIGGYLSKQ---GHDVLGTDLDPILIDYAKQDFP-----EARWVVGDLSVDQISETDFDL---IV  112 (195)
T ss_dssp             SCTTCEEEEETCTTTHHHHHHHHT---TCEEEEEESCHHHHHHHHHHCT-----TSEEEECCTTTSCCCCCCEEE---EE
T ss_pred             ccCCCeEEEECCCCCHHHHHHHHC---CCcEEEEcCCHHHHHHHHHhCC-----CCcEEEcccccCCCCCCceeE---EE
Confidence            457899999999999999999886   3699999999999999998763     588999999988766566664   66


Q ss_pred             Eec
Q 019802          319 CIF  321 (335)
Q Consensus       319 lD~  321 (335)
                      +.+
T Consensus       113 ~~~  115 (195)
T 3cgg_A          113 SAG  115 (195)
T ss_dssp             ECC
T ss_pred             ECC
Confidence            653

>2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens}

Probab=98.50  E-value=1.3e-07  Score=80.78  Aligned_cols=76  Identities=18%  Similarity=0.205  Sum_probs=57.4

Q ss_pred             CCCCCEEEEEcCCCchHHHHHHHHcCCC--------eEEEEEeCCHHHHHHHHHHHHHhCCCcEEEE-eccCCCCCC---
Q 019802          239 PKPGWKVLDACSAPGNKTVHLAALMKGK--------GKIVACELNKERVRRLKDTIKLSGAANIEVL-HGDFLNLDP---  306 (335)
Q Consensus       239 ~~~g~~VLD~cagpG~kt~~la~~~~~~--------g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~-~~D~~~~~~---  306 (335)
                      ++++.+|||+|||+|..+..+++.++..        ++|+++|+++.+           ++.+++++ ++|+...+.   
T Consensus        20 ~~~~~~vLDlGcG~G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~~-----------~~~~~~~~~~~d~~~~~~~~~   88 (196)
T 2nyu_A           20 LRPGLRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIF-----------PLEGATFLCPADVTDPRTSQR   88 (196)
T ss_dssp             CCTTCEEEEETCCSCHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCCC-----------CCTTCEEECSCCTTSHHHHHH
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHHHhccccccccCCCceEEEEechhcc-----------cCCCCeEEEeccCCCHHHHHH
Confidence            5789999999999999999999997643        799999999842           34578899 999876532   


Q ss_pred             -----CCCCCceEEEEEEecccccccc
Q 019802          307 -----KDPAYSEVSLIFCIFTWMIIMF  328 (335)
Q Consensus       307 -----~~~~fd~V~~IllD~~cs~~g~  328 (335)
                           .+.+|   |.|++|+.+..+|.
T Consensus        89 ~~~~~~~~~f---D~V~~~~~~~~~~~  112 (196)
T 2nyu_A           89 ILEVLPGRRA---DVILSDMAPNATGF  112 (196)
T ss_dssp             HHHHSGGGCE---EEEEECCCCCCCSC
T ss_pred             HHHhcCCCCC---cEEEeCCCCCCCCC
Confidence                 12344   56888876554443

>3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus}

Probab=98.50  E-value=4.6e-07  Score=89.00  Aligned_cols=80  Identities=19%  Similarity=0.134  Sum_probs=65.4

Q ss_pred             HcCCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCC-CcEEEEeccCCCCCCCCCCCceE
Q 019802          236 ALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGA-ANIEVLHGDFLNLDPKDPAYSEV  314 (335)
Q Consensus       236 ~l~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~-~ni~~~~~D~~~~~~~~~~fd~V  314 (335)
                      .+...++.+|||+|||+|..+..+++.  +..+|+++|+++ +++.++++++..|+ .+|+++++|+.+++.. ..||  
T Consensus       153 ~l~~~~~~~VLDiGcGtG~la~~la~~--~~~~V~gvD~s~-~l~~A~~~~~~~gl~~~v~~~~~d~~~~~~~-~~fD--  226 (480)
T 3b3j_A          153 NHTDFKDKIVLDVGCGSGILSFFAAQA--GARKIYAVEAST-MAQHAEVLVKSNNLTDRIVVIPGKVEEVSLP-EQVD--  226 (480)
T ss_dssp             TGGGTTTCEEEEESCSTTHHHHHHHHT--TCSEEEEEECHH-HHHHHHHHHHHTTCTTTEEEEESCTTTCCCS-SCEE--
T ss_pred             hhhhcCCCEEEEecCcccHHHHHHHHc--CCCEEEEEEcHH-HHHHHHHHHHHcCCCCcEEEEECchhhCccC-CCeE--
Confidence            344567899999999999999988874  456999999998 99999999999998 5799999999987543 2455  


Q ss_pred             EEEEEecc
Q 019802          315 SLIFCIFT  322 (335)
Q Consensus       315 ~~IllD~~  322 (335)
                       .|+++++
T Consensus       227 -~Ivs~~~  233 (480)
T 3b3j_A          227 -IIISEPM  233 (480)
T ss_dssp             -EEECCCC
T ss_pred             -EEEEeCc
Confidence             5776644

>3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus}

Probab=98.49  E-value=2.7e-07  Score=91.79  Aligned_cols=105  Identities=14%  Similarity=0.165  Sum_probs=85.4

Q ss_pred             ccceEEecCchHHHHHHHcC----CCCCCEEEEEcCCCchHHHHHHHHcC--CCeEEEEEeCCHHHHHHHHHHHHHhCC-
Q 019802          219 VNGCVFLQGKASSMVAAALA----PKPGWKVLDACSAPGNKTVHLAALMK--GKGKIVACELNKERVRRLKDTIKLSGA-  291 (335)
Q Consensus       219 ~~g~~~iQd~~s~l~~~~l~----~~~g~~VLD~cagpG~kt~~la~~~~--~~g~i~a~D~~~~rl~~~~~~~~~~g~-  291 (335)
                      ..|.|+--..-+.+++.++.    +.++.+|+|.|||+|+....+++.+.  +...|+++|+++..+..++.|+...|+ 
T Consensus       195 ~~G~fyTP~~Vv~lmv~ll~~~~~~~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi~  274 (542)
T 3lkd_A          195 KAGEFYTPQPVAKLMTQIAFLGREDKQGFTLYDATMGSGSLLLNAKRYSRQPQTVVYFGQELNTSTYNLARMNMILHGVP  274 (542)
T ss_dssp             CCSSCCCCHHHHHHHHHHHHTTCTTCTTCEEEETTCTTSTTGGGHHHHCSCTTTCEEEEEESCHHHHHHHHHHHHHTTCC
T ss_pred             cCCeecccHHHHHHHHHHHhcccCCCCCCEEeecccchhHHHHHHHHHHHhccCceEEEEECcHHHHHHHHHHHHHcCCC
Confidence            34666655566777787777    67899999999999999999998874  356899999999999999999999998 


Q ss_pred             -CcEEEEeccCCCCC---CCCCCCceEEEEEEecccccc
Q 019802          292 -ANIEVLHGDFLNLD---PKDPAYSEVSLIFCIFTWMII  326 (335)
Q Consensus       292 -~ni~~~~~D~~~~~---~~~~~fd~V~~IllD~~cs~~  326 (335)
                       .++.+.++|....+   .....||   .|+.+||.++.
T Consensus       275 ~~~~~I~~gDtL~~d~p~~~~~~fD---~IvaNPPf~~~  310 (542)
T 3lkd_A          275 IENQFLHNADTLDEDWPTQEPTNFD---GVLMNPPYSAK  310 (542)
T ss_dssp             GGGEEEEESCTTTSCSCCSSCCCBS---EEEECCCTTCC
T ss_pred             cCccceEecceeccccccccccccc---EEEecCCcCCc
Confidence             57899999998763   2344566   59999999854

>3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A*

Probab=98.49  E-value=1.7e-07  Score=85.27  Aligned_cols=81  Identities=14%  Similarity=0.199  Sum_probs=65.2

Q ss_pred             HHHHHHcCCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCC----CcEEEEeccCCCCC-
Q 019802          231 SMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGA----ANIEVLHGDFLNLD-  305 (335)
Q Consensus       231 ~l~~~~l~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~----~ni~~~~~D~~~~~-  305 (335)
                      .++...+...++.+|||+|||+|..+..+++.   ..+|+++|+|+.+++.+++++...+.    .++.+..+|+..++ 
T Consensus        47 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~---~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~  123 (293)
T 3thr_A           47 AWLLGLLRQHGCHRVLDVACGTGVDSIMLVEE---GFSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDK  123 (293)
T ss_dssp             HHHHHHHHHTTCCEEEETTCTTSHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHHH
T ss_pred             HHHHHHhcccCCCEEEEecCCCCHHHHHHHHC---CCeEEEEECCHHHHHHHHHhhhhcccccccceeeEeecChhhCcc
Confidence            34455555678899999999999999999987   35999999999999999998865443    36889999998877 


Q ss_pred             --CCCCCCceE
Q 019802          306 --PKDPAYSEV  314 (335)
Q Consensus       306 --~~~~~fd~V  314 (335)
                        ..+++||.|
T Consensus       124 ~~~~~~~fD~V  134 (293)
T 3thr_A          124 DVPAGDGFDAV  134 (293)
T ss_dssp             HSCCTTCEEEE
T ss_pred             ccccCCCeEEE
Confidence              566678753

>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33

Probab=98.49  E-value=3.5e-07  Score=82.23  Aligned_cols=70  Identities=13%  Similarity=0.110  Sum_probs=60.3

Q ss_pred             CCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCceEE
Q 019802          240 KPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVS  315 (335)
Q Consensus       240 ~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~~~~~~fd~V~  315 (335)
                      .++.+|||+|||+|..+..+++.++ ..+|+++|+|+.+++.++++.     .++.+..+|+.+++..+++||.|.
T Consensus        84 ~~~~~vLdiG~G~G~~~~~l~~~~~-~~~v~~vD~s~~~~~~a~~~~-----~~~~~~~~d~~~~~~~~~~fD~v~  153 (269)
T 1p91_A           84 DKATAVLDIGCGEGYYTHAFADALP-EITTFGLDVSKVAIKAAAKRY-----PQVTFCVASSHRLPFSDTSMDAII  153 (269)
T ss_dssp             TTCCEEEEETCTTSTTHHHHHHTCT-TSEEEEEESCHHHHHHHHHHC-----TTSEEEECCTTSCSBCTTCEEEEE
T ss_pred             CCCCEEEEECCCCCHHHHHHHHhCC-CCeEEEEeCCHHHHHHHHHhC-----CCcEEEEcchhhCCCCCCceeEEE
Confidence            6789999999999999999998763 469999999999999998774     468899999999887777888754

>2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A*

Probab=98.47  E-value=2.2e-07  Score=83.55  Aligned_cols=75  Identities=19%  Similarity=0.261  Sum_probs=61.8

Q ss_pred             CCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCceEEEEE
Q 019802          239 PKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVSLIF  318 (335)
Q Consensus       239 ~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~~~~~~fd~V~~Il  318 (335)
                      ..++.+|||+|||+|..+..++.+ +  .+|+++|+++.+++.+++|+++.|+. +.+.++|+.+. ....+||.   |+
T Consensus       118 ~~~~~~VLDiGcG~G~l~~~la~~-g--~~v~gvDi~~~~v~~a~~n~~~~~~~-v~~~~~d~~~~-~~~~~fD~---Vv  189 (254)
T 2nxc_A          118 LRPGDKVLDLGTGSGVLAIAAEKL-G--GKALGVDIDPMVLPQAEANAKRNGVR-PRFLEGSLEAA-LPFGPFDL---LV  189 (254)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHHHT-T--CEEEEEESCGGGHHHHHHHHHHTTCC-CEEEESCHHHH-GGGCCEEE---EE
T ss_pred             cCCCCEEEEecCCCcHHHHHHHHh-C--CeEEEEECCHHHHHHHHHHHHHcCCc-EEEEECChhhc-CcCCCCCE---EE
Confidence            567899999999999999988875 3  29999999999999999999999987 89999998763 22345664   66


Q ss_pred             Eec
Q 019802          319 CIF  321 (335)
Q Consensus       319 lD~  321 (335)
                      ++.
T Consensus       190 ~n~  192 (254)
T 2nxc_A          190 ANL  192 (254)
T ss_dssp             EEC
T ss_pred             ECC
Confidence            654

>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris}

Probab=98.47  E-value=4.1e-07  Score=78.68  Aligned_cols=66  Identities=20%  Similarity=0.139  Sum_probs=56.5

Q ss_pred             CCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCce
Q 019802          238 APKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSE  313 (335)
Q Consensus       238 ~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~~~~~~fd~  313 (335)
                      ...++.+|||+|||+|..+..++..   ..+|+++|+|+.+++.+++++      ++.+.++|+..++ .+.+||.
T Consensus        40 ~~~~~~~vLDiGcG~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~~------~~~~~~~d~~~~~-~~~~fD~  105 (211)
T 3e23_A           40 ELPAGAKILELGCGAGYQAEAMLAA---GFDVDATDGSPELAAEASRRL------GRPVRTMLFHQLD-AIDAYDA  105 (211)
T ss_dssp             TSCTTCEEEESSCTTSHHHHHHHHT---TCEEEEEESCHHHHHHHHHHH------TSCCEECCGGGCC-CCSCEEE
T ss_pred             hcCCCCcEEEECCCCCHHHHHHHHc---CCeEEEECCCHHHHHHHHHhc------CCceEEeeeccCC-CCCcEEE
Confidence            3457899999999999999999986   469999999999999999987      4667889999887 5566775

>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus}

Probab=98.46  E-value=2.6e-07  Score=77.02  Aligned_cols=69  Identities=12%  Similarity=0.102  Sum_probs=57.4

Q ss_pred             HHcCCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCceE
Q 019802          235 AALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEV  314 (335)
Q Consensus       235 ~~l~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~~~~~~fd~V  314 (335)
                      ..+.+.++.+|||+|||+|..+..+++..   .+++++|+++.+++.++++     ..++++.++|   .+..+++||.|
T Consensus        11 ~~~~~~~~~~vLDiG~G~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~-----~~~v~~~~~d---~~~~~~~~D~v   79 (170)
T 3i9f_A           11 PNIFEGKKGVIVDYGCGNGFYCKYLLEFA---TKLYCIDINVIALKEVKEK-----FDSVITLSDP---KEIPDNSVDFI   79 (170)
T ss_dssp             HHHHSSCCEEEEEETCTTCTTHHHHHTTE---EEEEEECSCHHHHHHHHHH-----CTTSEEESSG---GGSCTTCEEEE
T ss_pred             HhcCcCCCCeEEEECCCCCHHHHHHHhhc---CeEEEEeCCHHHHHHHHHh-----CCCcEEEeCC---CCCCCCceEEE
Confidence            34567789999999999999999998874   4999999999999999988     4579999999   45556677753

>1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A

Probab=98.44  E-value=1.9e-07  Score=84.02  Aligned_cols=91  Identities=13%  Similarity=0.202  Sum_probs=67.9

Q ss_pred             hHHHHHHHcCCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCC
Q 019802          229 ASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKD  308 (335)
Q Consensus       229 ~s~l~~~~l~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~~~~  308 (335)
                      -...+...+++.+|++|||+|||+|..|. ++ . ...++|+|+|+++.+++.+++++...  .+++++++|+.+++..+
T Consensus         9 i~~~iv~~~~~~~~~~VLEIG~G~G~lt~-l~-~-~~~~~v~avEid~~~~~~a~~~~~~~--~~v~~i~~D~~~~~~~~   83 (252)
T 1qyr_A            9 VIDSIVSAINPQKGQAMVEIGPGLAALTE-PV-G-ERLDQLTVIELDRDLAARLQTHPFLG--PKLTIYQQDAMTFNFGE   83 (252)
T ss_dssp             HHHHHHHHHCCCTTCCEEEECCTTTTTHH-HH-H-TTCSCEEEECCCHHHHHHHHTCTTTG--GGEEEECSCGGGCCHHH
T ss_pred             HHHHHHHhcCCCCcCEEEEECCCCcHHHH-hh-h-CCCCeEEEEECCHHHHHHHHHHhccC--CceEEEECchhhCCHHH
Confidence            34455667788899999999999999999 64 3 22234999999999999999987643  48999999999987532


Q ss_pred             CCC---ceEEEEEEeccccc
Q 019802          309 PAY---SEVSLIFCIFTWMI  325 (335)
Q Consensus       309 ~~f---d~V~~IllD~~cs~  325 (335)
                      . |   +..+.|+-++|...
T Consensus        84 ~-~~~~~~~~~vvsNlPY~i  102 (252)
T 1qyr_A           84 L-AEKMGQPLRVFGNLPYNI  102 (252)
T ss_dssp             H-HHHHTSCEEEEEECCTTT
T ss_pred             h-hcccCCceEEEECCCCCc
Confidence            1 1   11245777877653

>2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus}

Probab=98.44  E-value=4.8e-07  Score=78.16  Aligned_cols=64  Identities=14%  Similarity=0.060  Sum_probs=54.8

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCceE
Q 019802          241 PGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEV  314 (335)
Q Consensus       241 ~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~~~~~~fd~V  314 (335)
                      ++.+|||+|||+|..+..+     +..+++++|+|+.+++.+++++     .++.++++|+.+++..+++||.|
T Consensus        36 ~~~~vLdiG~G~G~~~~~l-----~~~~v~~vD~s~~~~~~a~~~~-----~~~~~~~~d~~~~~~~~~~fD~v   99 (211)
T 2gs9_A           36 PGESLLEVGAGTGYWLRRL-----PYPQKVGVEPSEAMLAVGRRRA-----PEATWVRAWGEALPFPGESFDVV   99 (211)
T ss_dssp             CCSEEEEETCTTCHHHHHC-----CCSEEEEECCCHHHHHHHHHHC-----TTSEEECCCTTSCCSCSSCEEEE
T ss_pred             CCCeEEEECCCCCHhHHhC-----CCCeEEEEeCCHHHHHHHHHhC-----CCcEEEEcccccCCCCCCcEEEE
Confidence            7899999999999988766     2238999999999999999886     57899999999988777778864

>3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A*

Probab=98.44  E-value=7.3e-07  Score=82.23  Aligned_cols=64  Identities=16%  Similarity=0.104  Sum_probs=55.1

Q ss_pred             CCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHh-------CCCcEEEEeccCCCCC
Q 019802          240 KPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLS-------GAANIEVLHGDFLNLD  305 (335)
Q Consensus       240 ~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~-------g~~ni~~~~~D~~~~~  305 (335)
                      .++.+|||+|||+|..+..+++.  +..+|+++|+|+.+++.++++....       +..++.++++|+..++
T Consensus        33 ~~~~~VLDlGcG~G~~~~~l~~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~  103 (313)
T 3bgv_A           33 KRDITVLDLGCGKGGDLLKWKKG--RINKLVCTDIADVSVKQCQQRYEDMKNRRDSEYIFSAEFITADSSKEL  103 (313)
T ss_dssp             --CCEEEEETCTTTTTHHHHHHT--TCSEEEEEESCHHHHHHHHHHHHHHHSSSCC-CCCEEEEEECCTTTSC
T ss_pred             CCCCEEEEECCCCcHHHHHHHhc--CCCEEEEEeCCHHHHHHHHHHHHHhhhcccccccceEEEEEecccccc
Confidence            37889999999999999999874  3579999999999999999998876       4457999999999876

>2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A

Probab=98.43  E-value=2.6e-07  Score=81.38  Aligned_cols=68  Identities=19%  Similarity=0.230  Sum_probs=57.0

Q ss_pred             CCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCceE
Q 019802          239 PKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEV  314 (335)
Q Consensus       239 ~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~~~~~~fd~V  314 (335)
                      ..++.+|||+|||+|..+..+++..   .+|+++|+|+.+++.+++++..    ++.++++|+.++ +.+++||.|
T Consensus        40 ~~~~~~vLDiGcG~G~~~~~l~~~~---~~v~gvD~s~~~~~~a~~~~~~----~v~~~~~d~~~~-~~~~~fD~v  107 (250)
T 2p7i_A           40 FFRPGNLLELGSFKGDFTSRLQEHF---NDITCVEASEEAISHAQGRLKD----GITYIHSRFEDA-QLPRRYDNI  107 (250)
T ss_dssp             GCCSSCEEEESCTTSHHHHHHTTTC---SCEEEEESCHHHHHHHHHHSCS----CEEEEESCGGGC-CCSSCEEEE
T ss_pred             hcCCCcEEEECCCCCHHHHHHHHhC---CcEEEEeCCHHHHHHHHHhhhC----CeEEEEccHHHc-CcCCcccEE
Confidence            3578899999999999999998762   3799999999999999988653    799999999888 445678764

>2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme}

Probab=98.43  E-value=6.7e-07  Score=83.05  Aligned_cols=79  Identities=18%  Similarity=0.271  Sum_probs=65.7

Q ss_pred             HHHHHcCC--CCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCC-cEEEEeccCCCCCCCC
Q 019802          232 MVAAALAP--KPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAA-NIEVLHGDFLNLDPKD  308 (335)
Q Consensus       232 l~~~~l~~--~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~-ni~~~~~D~~~~~~~~  308 (335)
                      .+...++.  .++.+|||+|||+|..+..+++.. +..+++++|++ .+++.+++++...|+. +|+++.+|+.+.+...
T Consensus       154 ~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~~-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~  231 (335)
T 2r3s_A          154 LIAQLVNENKIEPLKVLDISASHGLFGIAVAQHN-PNAEIFGVDWA-SVLEVAKENARIQGVASRYHTIAGSAFEVDYGN  231 (335)
T ss_dssp             HHHHHHTC--CCCSEEEEETCTTCHHHHHHHHHC-TTCEEEEEECH-HHHHHHHHHHHHHTCGGGEEEEESCTTTSCCCS
T ss_pred             HHHHhcccccCCCCEEEEECCCcCHHHHHHHHHC-CCCeEEEEecH-HHHHHHHHHHHhcCCCcceEEEecccccCCCCC
Confidence            33445566  788999999999999999999986 45799999999 9999999999999986 4999999998865443


Q ss_pred             CCCce
Q 019802          309 PAYSE  313 (335)
Q Consensus       309 ~~fd~  313 (335)
                      . ||.
T Consensus       232 ~-~D~  235 (335)
T 2r3s_A          232 D-YDL  235 (335)
T ss_dssp             C-EEE
T ss_pred             C-CcE
Confidence            3 664

>1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A*

Probab=98.41  E-value=1.4e-07  Score=86.17  Aligned_cols=79  Identities=15%  Similarity=0.167  Sum_probs=63.2

Q ss_pred             CCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHh--C---------CCcEEEEeccCCCCCCC
Q 019802          239 PKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLS--G---------AANIEVLHGDFLNLDPK  307 (335)
Q Consensus       239 ~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~--g---------~~ni~~~~~D~~~~~~~  307 (335)
                      ...+.+|||+|||+|+.+..++..  +..+|+++|+++.+++.+++++ ++  +         -.+++++++|+.+....
T Consensus        73 ~~~~~~VLdiG~G~G~~~~~l~~~--~~~~v~~vDid~~~i~~ar~~~-~~~~~l~~~~~~~~~~~v~~~~~D~~~~l~~  149 (281)
T 1mjf_A           73 HPKPKRVLVIGGGDGGTVREVLQH--DVDEVIMVEIDEDVIMVSKDLI-KIDNGLLEAMLNGKHEKAKLTIGDGFEFIKN  149 (281)
T ss_dssp             SSCCCEEEEEECTTSHHHHHHTTS--CCSEEEEEESCHHHHHHHHHHT-CTTTTHHHHHHTTCCSSEEEEESCHHHHHHH
T ss_pred             CCCCCeEEEEcCCcCHHHHHHHhC--CCCEEEEEECCHHHHHHHHHHH-hhccccccccccCCCCcEEEEECchHHHhcc
Confidence            345689999999999999999887  4579999999999999999998 54  3         35799999998764221


Q ss_pred             CCCCceEEEEEEeccc
Q 019802          308 DPAYSEVSLIFCIFTW  323 (335)
Q Consensus       308 ~~~fd~V~~IllD~~c  323 (335)
                      .++||   .|++|+++
T Consensus       150 ~~~fD---~Ii~d~~~  162 (281)
T 1mjf_A          150 NRGFD---VIIADSTD  162 (281)
T ss_dssp             CCCEE---EEEEECCC
T ss_pred             cCCee---EEEECCCC
Confidence            34565   58889876

>4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens}

Probab=98.40  E-value=5e-07  Score=85.86  Aligned_cols=74  Identities=20%  Similarity=0.340  Sum_probs=60.7

Q ss_pred             CCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCc-EEEEeccCCCCCCCCCCCceEEEEE
Q 019802          240 KPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAAN-IEVLHGDFLNLDPKDPAYSEVSLIF  318 (335)
Q Consensus       240 ~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~n-i~~~~~D~~~~~~~~~~fd~V~~Il  318 (335)
                      .+|.+|||+|||+|..+..+|+.  +..+|+|+|.|+ +++.++++++..|+.+ |+++++|.+++..+.    .||.|+
T Consensus        82 ~~~k~VLDvG~GtGiLs~~Aa~a--GA~~V~ave~s~-~~~~a~~~~~~n~~~~~i~~i~~~~~~~~lpe----~~Dviv  154 (376)
T 4hc4_A           82 LRGKTVLDVGAGTGILSIFCAQA--GARRVYAVEASA-IWQQAREVVRFNGLEDRVHVLPGPVETVELPE----QVDAIV  154 (376)
T ss_dssp             HTTCEEEEETCTTSHHHHHHHHT--TCSEEEEEECST-THHHHHHHHHHTTCTTTEEEEESCTTTCCCSS----CEEEEE
T ss_pred             cCCCEEEEeCCCccHHHHHHHHh--CCCEEEEEeChH-HHHHHHHHHHHcCCCceEEEEeeeeeeecCCc----cccEEE
Confidence            36899999999999998777664  346899999995 8999999999999865 999999999987653    345566


Q ss_pred             Ee
Q 019802          319 CI  320 (335)
Q Consensus       319 lD  320 (335)
                      .+
T Consensus       155 sE  156 (376)
T 4hc4_A          155 SE  156 (376)
T ss_dssp             CC
T ss_pred             ee
Confidence            54

>3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana}

Probab=98.40  E-value=3.4e-07  Score=80.67  Aligned_cols=70  Identities=14%  Similarity=0.241  Sum_probs=58.0

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCC-CcEEEEeccCCCCCCCCCCCceE
Q 019802          241 PGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGA-ANIEVLHGDFLNLDPKDPAYSEV  314 (335)
Q Consensus       241 ~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~-~ni~~~~~D~~~~~~~~~~fd~V  314 (335)
                      ++.+|||+|||+|..+..++.   ...+|+++|+|+.+++.+++++...+. .+++++++|+.++++. .+||.|
T Consensus        66 ~~~~vLDiGcG~G~~~~~l~~---~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~-~~fD~v  136 (235)
T 3lcc_A           66 PLGRALVPGCGGGHDVVAMAS---PERFVVGLDISESALAKANETYGSSPKAEYFSFVKEDVFTWRPT-ELFDLI  136 (235)
T ss_dssp             CCEEEEEETCTTCHHHHHHCB---TTEEEEEECSCHHHHHHHHHHHTTSGGGGGEEEECCCTTTCCCS-SCEEEE
T ss_pred             CCCCEEEeCCCCCHHHHHHHh---CCCeEEEEECCHHHHHHHHHHhhccCCCcceEEEECchhcCCCC-CCeeEE
Confidence            345999999999999998865   357999999999999999999987543 5699999999997743 467753

>3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A*

Probab=98.40  E-value=4.6e-07  Score=81.21  Aligned_cols=65  Identities=20%  Similarity=0.272  Sum_probs=55.8

Q ss_pred             CCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCce
Q 019802          240 KPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSE  313 (335)
Q Consensus       240 ~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~~~~~~fd~  313 (335)
                      .++.+|||+|||+|..+..++..   ..+|+++|+|+.+++.+++++.     ++.++++|+.+++. +.+||.
T Consensus        49 ~~~~~vLDiGcG~G~~~~~l~~~---~~~v~gvD~s~~~~~~a~~~~~-----~~~~~~~d~~~~~~-~~~fD~  113 (263)
T 3pfg_A           49 PKAASLLDVACGTGMHLRHLADS---FGTVEGLELSADMLAIARRRNP-----DAVLHHGDMRDFSL-GRRFSA  113 (263)
T ss_dssp             TTCCEEEEETCTTSHHHHHHTTT---SSEEEEEESCHHHHHHHHHHCT-----TSEEEECCTTTCCC-SCCEEE
T ss_pred             CCCCcEEEeCCcCCHHHHHHHHc---CCeEEEEECCHHHHHHHHhhCC-----CCEEEECChHHCCc-cCCcCE
Confidence            45789999999999999999876   3589999999999999998854     68999999999876 566775

>4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A*

Probab=98.40  E-value=4.6e-07  Score=90.84  Aligned_cols=73  Identities=16%  Similarity=0.132  Sum_probs=63.3

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCC--CCCCCCceEEE
Q 019802          241 PGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLD--PKDPAYSEVSL  316 (335)
Q Consensus       241 ~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~--~~~~~fd~V~~  316 (335)
                      .+-+|||+|||.|..+..||.+   +..|+++|.++..++.++..+...|..+|.+.++|++++.  ..++.||.|.+
T Consensus        66 ~~~~vLDvGCG~G~~~~~la~~---ga~V~giD~~~~~i~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~fD~v~~  140 (569)
T 4azs_A           66 RPLNVLDLGCAQGFFSLSLASK---GATIVGIDFQQENINVCRALAEENPDFAAEFRVGRIEEVIAALEEGEFDLAIG  140 (569)
T ss_dssp             SCCEEEEETCTTSHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHTSTTSEEEEEECCHHHHHHHCCTTSCSEEEE
T ss_pred             CCCeEEEECCCCcHHHHHHHhC---CCEEEEECCCHHHHHHHHHHHHhcCCCceEEEECCHHHHhhhccCCCccEEEE
Confidence            4679999999999999999987   4789999999999999999999888668999999999873  34567997543

>2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus}

Probab=98.37  E-value=4e-08  Score=89.15  Aligned_cols=74  Identities=15%  Similarity=0.039  Sum_probs=53.7

Q ss_pred             CCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHH---HHHhCCCcEEEE--eccCCCCCCCCCCCc
Q 019802          238 APKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDT---IKLSGAANIEVL--HGDFLNLDPKDPAYS  312 (335)
Q Consensus       238 ~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~---~~~~g~~ni~~~--~~D~~~~~~~~~~fd  312 (335)
                      .+++|.+|||+|||||+.+..+++.    ++|+|+|+++ ++..++++   .+..|. ++.++  ++|+.+++  +.+||
T Consensus        71 ~~~~g~~VLDlGcGtG~~s~~la~~----~~V~gvD~s~-m~~~a~~~~~~~~~~~~-~v~~~~~~~D~~~l~--~~~fD  142 (265)
T 2oxt_A           71 YVELTGRVVDLGCGRGGWSYYAASR----PHVMDVRAYT-LGVGGHEVPRITESYGW-NIVKFKSRVDIHTLP--VERTD  142 (265)
T ss_dssp             SCCCCEEEEEESCTTSHHHHHHHTS----TTEEEEEEEC-CCCSSCCCCCCCCBTTG-GGEEEECSCCTTTSC--CCCCS
T ss_pred             CCCCCCEEEEeCcCCCHHHHHHHHc----CcEEEEECch-hhhhhhhhhhhhhccCC-CeEEEecccCHhHCC--CCCCc
Confidence            3578999999999999999988876    6899999998 43222111   001111 68889  99999876  45687


Q ss_pred             eEEEEEEecc
Q 019802          313 EVSLIFCIFT  322 (335)
Q Consensus       313 ~V~~IllD~~  322 (335)
                      .   |++|..
T Consensus       143 ~---V~sd~~  149 (265)
T 2oxt_A          143 V---IMCDVG  149 (265)
T ss_dssp             E---EEECCC
T ss_pred             E---EEEeCc
Confidence            5   788866

>3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae}

Probab=98.37  E-value=1.6e-06  Score=76.08  Aligned_cols=65  Identities=15%  Similarity=0.328  Sum_probs=56.0

Q ss_pred             CCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCce
Q 019802          240 KPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSE  313 (335)
Q Consensus       240 ~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~~~~~~fd~  313 (335)
                      .++.+|||+|||+|..+..++...   .+|+++|+|+.+++.+++++     .++.++++|+.+++. ..+||.
T Consensus        39 ~~~~~vLdiG~G~G~~~~~l~~~~---~~v~~~D~s~~~~~~a~~~~-----~~~~~~~~d~~~~~~-~~~~D~  103 (239)
T 3bxo_A           39 PEASSLLDVACGTGTHLEHFTKEF---GDTAGLELSEDMLTHARKRL-----PDATLHQGDMRDFRL-GRKFSA  103 (239)
T ss_dssp             TTCCEEEEETCTTSHHHHHHHHHH---SEEEEEESCHHHHHHHHHHC-----TTCEEEECCTTTCCC-SSCEEE
T ss_pred             CCCCeEEEecccCCHHHHHHHHhC---CcEEEEeCCHHHHHHHHHhC-----CCCEEEECCHHHccc-CCCCcE
Confidence            578899999999999999999874   38999999999999998874     468999999998876 556775

>2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A*

Probab=98.36  E-value=4e-08  Score=89.66  Aligned_cols=73  Identities=11%  Similarity=0.049  Sum_probs=53.5

Q ss_pred             CCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHH---HHhCCCcEEEE--eccCCCCCCCCCCCce
Q 019802          239 PKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTI---KLSGAANIEVL--HGDFLNLDPKDPAYSE  313 (335)
Q Consensus       239 ~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~---~~~g~~ni~~~--~~D~~~~~~~~~~fd~  313 (335)
                      +++|.+|||+|||||+.+..++++    ++|+|+|+++ ++..++++.   +..|. ++.++  ++|+.+++  +.+||.
T Consensus        80 ~~~g~~VLDlGcGtG~~s~~la~~----~~V~gVD~s~-m~~~a~~~~~~~~~~~~-~v~~~~~~~D~~~l~--~~~fD~  151 (276)
T 2wa2_A           80 VELKGTVVDLGCGRGSWSYYAASQ----PNVREVKAYT-LGTSGHEKPRLVETFGW-NLITFKSKVDVTKME--PFQADT  151 (276)
T ss_dssp             CCCCEEEEEESCTTCHHHHHHHTS----TTEEEEEEEC-CCCTTSCCCCCCCCTTG-GGEEEECSCCGGGCC--CCCCSE
T ss_pred             CCCCCEEEEeccCCCHHHHHHHHc----CCEEEEECch-hhhhhhhchhhhhhcCC-CeEEEeccCcHhhCC--CCCcCE
Confidence            568999999999999999998876    5899999998 533222110   01111 78899  99999876  456885


Q ss_pred             EEEEEEecc
Q 019802          314 VSLIFCIFT  322 (335)
Q Consensus       314 V~~IllD~~  322 (335)
                         |++|..
T Consensus       152 ---Vvsd~~  157 (276)
T 2wa2_A          152 ---VLCDIG  157 (276)
T ss_dssp             ---EEECCC
T ss_pred             ---EEECCC
Confidence               777866

>2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A*

Probab=98.36  E-value=4.4e-07  Score=83.87  Aligned_cols=81  Identities=16%  Similarity=0.212  Sum_probs=64.1

Q ss_pred             CCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHh--C--CCcEEEEeccCCCC-CCCCCCCce
Q 019802          239 PKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLS--G--AANIEVLHGDFLNL-DPKDPAYSE  313 (335)
Q Consensus       239 ~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~--g--~~ni~~~~~D~~~~-~~~~~~fd~  313 (335)
                      ...+.+|||+|||+|+.+..+++. .+..+|+++|+++.+++.+++++...  +  -.+++++++|+.+. +...++|| 
T Consensus        93 ~~~~~~VLdiG~G~G~~~~~l~~~-~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~~fD-  170 (304)
T 2o07_A           93 HPNPRKVLIIGGGDGGVLREVVKH-PSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQDAFD-  170 (304)
T ss_dssp             SSSCCEEEEEECTTSHHHHHHTTC-TTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTCSSCEE-
T ss_pred             CCCCCEEEEECCCchHHHHHHHHc-CCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHhhCCCCce-
Confidence            345689999999999999999876 34579999999999999999998762  3  35799999999763 33344565 


Q ss_pred             EEEEEEeccc
Q 019802          314 VSLIFCIFTW  323 (335)
Q Consensus       314 V~~IllD~~c  323 (335)
                        .|++|++.
T Consensus       171 --~Ii~d~~~  178 (304)
T 2o07_A          171 --VIITDSSD  178 (304)
T ss_dssp             --EEEEECC-
T ss_pred             --EEEECCCC
Confidence              58888765

>1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A*

Probab=98.36  E-value=2.1e-06  Score=81.07  Aligned_cols=70  Identities=23%  Similarity=0.209  Sum_probs=61.6

Q ss_pred             HHHHHcCCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCC-cEEEEeccCCC
Q 019802          232 MVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAA-NIEVLHGDFLN  303 (335)
Q Consensus       232 l~~~~l~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~-ni~~~~~D~~~  303 (335)
                      .+...++..++.+|||+|||+|..+..+++.. +..+++++|+ +.+++.+++++...|+. +|+++++|+.+
T Consensus       173 ~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~-~~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~  243 (374)
T 1qzz_A          173 APADAYDWSAVRHVLDVGGGNGGMLAAIALRA-PHLRGTLVEL-AGPAERARRRFADAGLADRVTVAEGDFFK  243 (374)
T ss_dssp             HHHHTSCCTTCCEEEEETCTTSHHHHHHHHHC-TTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTS
T ss_pred             HHHHhCCCCCCCEEEEECCCcCHHHHHHHHHC-CCCEEEEEeC-HHHHHHHHHHHHhcCCCCceEEEeCCCCC
Confidence            34455667788999999999999999999986 4579999999 99999999999999986 79999999976

>1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A*

Probab=98.36  E-value=1.6e-06  Score=81.60  Aligned_cols=78  Identities=10%  Similarity=0.063  Sum_probs=66.4

Q ss_pred             chHHHHHHHcCCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCc-EEEEeccCCCCCC
Q 019802          228 KASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAAN-IEVLHGDFLNLDP  306 (335)
Q Consensus       228 ~~s~l~~~~l~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~n-i~~~~~D~~~~~~  306 (335)
                      .....+...++..++.+|||+|||+|..+..+++..+ ..+++++|+ +.+++.++++++..|+.+ |+++.+|+.+.+.
T Consensus       177 ~~~~~l~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~  254 (359)
T 1x19_A          177 FAIQLLLEEAKLDGVKKMIDVGGGIGDISAAMLKHFP-ELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKESY  254 (359)
T ss_dssp             HHHHHHHHHCCCTTCCEEEEESCTTCHHHHHHHHHCT-TCEEEEEEC-GGGHHHHHHHHHHTTCTTTEEEEECCTTTSCC
T ss_pred             hhHHHHHHhcCCCCCCEEEEECCcccHHHHHHHHHCC-CCeEEEEec-HHHHHHHHHHHHhcCCCCCEEEEeCccccCCC
Confidence            3344555667778899999999999999999999854 579999999 999999999999999865 9999999988754


Q ss_pred             C
Q 019802          307 K  307 (335)
Q Consensus       307 ~  307 (335)
                      +
T Consensus       255 ~  255 (359)
T 1x19_A          255 P  255 (359)
T ss_dssp             C
T ss_pred             C
Confidence            4

>1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A

Probab=98.35  E-value=5.7e-07  Score=84.23  Aligned_cols=80  Identities=19%  Similarity=0.164  Sum_probs=64.0

Q ss_pred             CCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHh--CC--CcEEEEeccCCCCC--CCCCCCc
Q 019802          239 PKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLS--GA--ANIEVLHGDFLNLD--PKDPAYS  312 (335)
Q Consensus       239 ~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~--g~--~ni~~~~~D~~~~~--~~~~~fd  312 (335)
                      ...+.+|||+|||+|+.+..++.. .+..+|+++|+|+.+++.+++++.++  |+  .+++++++|+.+..  ..+.+||
T Consensus       118 ~~~~~~VLdIG~G~G~~a~~la~~-~~~~~V~~VDis~~~l~~Ar~~~~~~~~gl~~~rv~~~~~D~~~~l~~~~~~~fD  196 (334)
T 1xj5_A          118 IPNPKKVLVIGGGDGGVLREVARH-ASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGSYD  196 (334)
T ss_dssp             SSCCCEEEEETCSSSHHHHHHTTC-TTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCTTCEE
T ss_pred             CCCCCEEEEECCCccHHHHHHHHc-CCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEECCHHHHHHhccCCCcc
Confidence            345789999999999999999876 34579999999999999999999874  44  57999999997642  1234566


Q ss_pred             eEEEEEEecc
Q 019802          313 EVSLIFCIFT  322 (335)
Q Consensus       313 ~V~~IllD~~  322 (335)
                         .|++|++
T Consensus       197 ---lIi~d~~  203 (334)
T 1xj5_A          197 ---AVIVDSS  203 (334)
T ss_dssp             ---EEEECCC
T ss_pred             ---EEEECCC
Confidence               5888875

>2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A*

Probab=98.35  E-value=3.5e-07  Score=83.64  Aligned_cols=78  Identities=12%  Similarity=0.154  Sum_probs=56.1

Q ss_pred             CCCCCEEEEEcCCCchHHHHHHHHc---CCCeEE--EEEeCCHHHHHHHHHHHHHh-CCCcEEE--EeccCCCCC-----
Q 019802          239 PKPGWKVLDACSAPGNKTVHLAALM---KGKGKI--VACELNKERVRRLKDTIKLS-GAANIEV--LHGDFLNLD-----  305 (335)
Q Consensus       239 ~~~g~~VLD~cagpG~kt~~la~~~---~~~g~i--~a~D~~~~rl~~~~~~~~~~-g~~ni~~--~~~D~~~~~-----  305 (335)
                      +.++.+|||+|||+|..+..++..+   .+...|  +++|+|+.|++.++++++.. ++.++.+  ..+|+.+++     
T Consensus        50 ~~~~~~VLDiG~GtG~~~~~~l~~l~~~~~~~~v~~~~vD~S~~ml~~a~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~  129 (292)
T 2aot_A           50 TKSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKTSNLENVKFAWHKETSSEYQSRMLE  129 (292)
T ss_dssp             TCSEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECSCHHHHHHHHHHHHTCSSCTTEEEEEECSCHHHHHHHHHT
T ss_pred             CCCCCeEEEEcCCCCHHHHHHHHHHHhhCCCceeeEEEEeCCHHHHHHHHHHHHhccCCCcceEEEEecchhhhhhhhcc
Confidence            4567899999999998887654432   134554  99999999999999998764 6667655  455665443     


Q ss_pred             -CCCCCCceEEE
Q 019802          306 -PKDPAYSEVSL  316 (335)
Q Consensus       306 -~~~~~fd~V~~  316 (335)
                       +.+++||.|.+
T Consensus       130 ~~~~~~fD~V~~  141 (292)
T 2aot_A          130 KKELQKWDFIHM  141 (292)
T ss_dssp             TTCCCCEEEEEE
T ss_pred             ccCCCceeEEEE
Confidence             34567887543

>2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41

Probab=98.35  E-value=1.3e-06  Score=78.20  Aligned_cols=65  Identities=20%  Similarity=0.200  Sum_probs=55.5

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCceE
Q 019802          241 PGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEV  314 (335)
Q Consensus       241 ~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~~~~~~fd~V  314 (335)
                      ++.+|||+|||+|..+..+++.   ..+|+++|+|+.+++.++++..    .+  ++++|+.+++..+++||.|
T Consensus        54 ~~~~vLDiGcG~G~~~~~l~~~---~~~v~gvD~s~~~l~~a~~~~~----~~--~~~~d~~~~~~~~~~fD~v  118 (260)
T 2avn_A           54 NPCRVLDLGGGTGKWSLFLQER---GFEVVLVDPSKEMLEVAREKGV----KN--VVEAKAEDLPFPSGAFEAV  118 (260)
T ss_dssp             SCCEEEEETCTTCHHHHHHHTT---TCEEEEEESCHHHHHHHHHHTC----SC--EEECCTTSCCSCTTCEEEE
T ss_pred             CCCeEEEeCCCcCHHHHHHHHc---CCeEEEEeCCHHHHHHHHhhcC----CC--EEECcHHHCCCCCCCEEEE
Confidence            7889999999999999999876   3689999999999999988754    23  7899999988777778863

>2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A*

Probab=98.35  E-value=4.4e-07  Score=84.56  Aligned_cols=79  Identities=19%  Similarity=0.170  Sum_probs=62.7

Q ss_pred             CCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHh--C--CCcEEEEeccCCCCC-CCCCCCceE
Q 019802          240 KPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLS--G--AANIEVLHGDFLNLD-PKDPAYSEV  314 (335)
Q Consensus       240 ~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~--g--~~ni~~~~~D~~~~~-~~~~~fd~V  314 (335)
                      .++.+|||+|||+|+.+..+++.. +..+|+++|+|+.+++.+++++..+  +  .++++++++|+.+.. ...++||  
T Consensus       115 ~~~~~VLdiG~G~G~~~~~l~~~~-~~~~v~~vDis~~~l~~ar~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD--  191 (321)
T 2pt6_A          115 KEPKNVLVVGGGDGGIIRELCKYK-SVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYD--  191 (321)
T ss_dssp             SSCCEEEEEECTTCHHHHHHTTCT-TCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEE--
T ss_pred             CCCCEEEEEcCCccHHHHHHHHcC-CCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEEccHHHHHhhcCCCce--
Confidence            456899999999999999998753 4579999999999999999998763  2  357999999987642 2234565  


Q ss_pred             EEEEEecc
Q 019802          315 SLIFCIFT  322 (335)
Q Consensus       315 ~~IllD~~  322 (335)
                       .|++|++
T Consensus       192 -vIi~d~~  198 (321)
T 2pt6_A          192 -VIIVDSS  198 (321)
T ss_dssp             -EEEEECC
T ss_pred             -EEEECCc
Confidence             5888874

>2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A*

Probab=98.34  E-value=4.8e-07  Score=83.01  Aligned_cols=74  Identities=20%  Similarity=0.209  Sum_probs=55.7

Q ss_pred             cCCCCCCEEEEEcC------CCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEE-EeccCCCCCCCCC
Q 019802          237 LAPKPGWKVLDACS------APGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEV-LHGDFLNLDPKDP  309 (335)
Q Consensus       237 l~~~~g~~VLD~ca------gpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~-~~~D~~~~~~~~~  309 (335)
                      +.+++|++|||+||      |||+  ..++++++..++|+++|+++.             +.++++ +++|+.+++.. .
T Consensus        59 l~l~~g~~VLDLGcGsg~~~GpGs--~~~a~~~~~~~~V~gvDis~~-------------v~~v~~~i~gD~~~~~~~-~  122 (290)
T 2xyq_A           59 LAVPYNMRVIHFGAGSDKGVAPGT--AVLRQWLPTGTLLVDSDLNDF-------------VSDADSTLIGDCATVHTA-N  122 (290)
T ss_dssp             CCCCTTCEEEEESCCCTTSBCHHH--HHHHHHSCTTCEEEEEESSCC-------------BCSSSEEEESCGGGCCCS-S
T ss_pred             cCCCCCCEEEEeCCCCCCCCCcHH--HHHHHHcCCCCEEEEEECCCC-------------CCCCEEEEECccccCCcc-C
Confidence            46788999999999      7788  666777776789999999987             246788 99999887643 3


Q ss_pred             CCceEEEEEEeccccccccc
Q 019802          310 AYSEVSLIFCIFTWMIIMFH  329 (335)
Q Consensus       310 ~fd~V~~IllD~~cs~~g~~  329 (335)
                      +|   |.|+.|+.++.+|.+
T Consensus       123 ~f---D~Vvsn~~~~~~g~~  139 (290)
T 2xyq_A          123 KW---DLIISDMYDPRTKHV  139 (290)
T ss_dssp             CE---EEEEECCCCCC---C
T ss_pred             cc---cEEEEcCCccccccc
Confidence            45   468888776665543

>1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17

Probab=98.33  E-value=6.2e-07  Score=81.62  Aligned_cols=79  Identities=13%  Similarity=0.053  Sum_probs=63.3

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHh--CC--CcEEEEeccCCCC-CCCCCCCceEE
Q 019802          241 PGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLS--GA--ANIEVLHGDFLNL-DPKDPAYSEVS  315 (335)
Q Consensus       241 ~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~--g~--~ni~~~~~D~~~~-~~~~~~fd~V~  315 (335)
                      .+.+|||+|||.|+.+..++.. .+..+|+++|+++.+++.+++++..+  ++  ++++++++|+.+. +....+||   
T Consensus        75 ~~~~VLdiG~G~G~~~~~l~~~-~~~~~v~~vEid~~~v~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~fD---  150 (275)
T 1iy9_A           75 NPEHVLVVGGGDGGVIREILKH-PSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKSENQYD---  150 (275)
T ss_dssp             SCCEEEEESCTTCHHHHHHTTC-TTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTCCSCEE---
T ss_pred             CCCEEEEECCchHHHHHHHHhC-CCCceEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCee---
Confidence            5689999999999999998875 34579999999999999999998763  33  5799999999773 32334565   


Q ss_pred             EEEEeccc
Q 019802          316 LIFCIFTW  323 (335)
Q Consensus       316 ~IllD~~c  323 (335)
                      .|++|++.
T Consensus       151 ~Ii~d~~~  158 (275)
T 1iy9_A          151 VIMVDSTE  158 (275)
T ss_dssp             EEEESCSS
T ss_pred             EEEECCCC
Confidence            58889875

>2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15

Probab=98.33  E-value=2.6e-07  Score=83.24  Aligned_cols=80  Identities=20%  Similarity=0.145  Sum_probs=58.3

Q ss_pred             CCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhC--C------------------------
Q 019802          238 APKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSG--A------------------------  291 (335)
Q Consensus       238 ~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g--~------------------------  291 (335)
                      .+.+|.+|||+|||+|..+..++..  +..+|+++|+|+.+++.++++++...  +                        
T Consensus        52 ~~~~g~~vLDiGCG~G~~~~~~~~~--~~~~v~g~D~s~~~l~~a~~~~~~~~~~~d~s~~~~~~~~~~~~~~~~~~~~~  129 (263)
T 2a14_A           52 GGLQGDTLIDIGSGPTIYQVLAACD--SFQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEE  129 (263)
T ss_dssp             TSCCEEEEEESSCTTCCGGGTTGGG--TEEEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHH
T ss_pred             CCCCCceEEEeCCCccHHHHHHHHh--hhcceeeccccHHHHHHHHHHHhcCCCcccchHHHHHHHhcCCCCcchhhHHH
Confidence            4567899999999999887766544  23479999999999999998875421  1                        


Q ss_pred             ---CcEE-EEeccCCCCCC----CCCCCceEEEEEE
Q 019802          292 ---ANIE-VLHGDFLNLDP----KDPAYSEVSLIFC  319 (335)
Q Consensus       292 ---~ni~-~~~~D~~~~~~----~~~~fd~V~~Ill  319 (335)
                         .+|. ++++|+.+..+    ..++||.|.++++
T Consensus       130 ~~~~~i~~~~~~D~~~~~~~~~~~~~~fD~V~~~~~  165 (263)
T 2a14_A          130 KLRAAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLA  165 (263)
T ss_dssp             HHHHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESC
T ss_pred             HHHhhhheEEeccccCCCCCCccccCCCCEeeehHH
Confidence               1344 88999988532    2457887666544

>3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae}

Probab=98.31  E-value=1.9e-06  Score=78.45  Aligned_cols=74  Identities=15%  Similarity=0.144  Sum_probs=53.6

Q ss_pred             CCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeC-CHHHHHHHHHHH-----HHhCCC-----cEEEEeccCCCCC--
Q 019802          239 PKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACEL-NKERVRRLKDTI-----KLSGAA-----NIEVLHGDFLNLD--  305 (335)
Q Consensus       239 ~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~-~~~rl~~~~~~~-----~~~g~~-----ni~~~~~D~~~~~--  305 (335)
                      ..+|.+|||+|||+|..+..++..  +.++|+++|+ ++.+++.+++|+     +..|+.     ++.+...|..+..  
T Consensus        77 ~~~~~~vLDlG~G~G~~~~~~a~~--~~~~v~~~D~s~~~~~~~a~~n~~~N~~~~~~~~~~~~~~v~~~~~~~~~~~~~  154 (281)
T 3bzb_A           77 LIAGKTVCELGAGAGLVSIVAFLA--GADQVVATDYPDPEILNSLESNIREHTANSCSSETVKRASPKVVPYRWGDSPDS  154 (281)
T ss_dssp             GTTTCEEEETTCTTSHHHHHHHHT--TCSEEEEEECSCHHHHHHHHHHHHTTCC----------CCCEEEECCTTSCTHH
T ss_pred             hcCCCeEEEecccccHHHHHHHHc--CCCEEEEEeCCCHHHHHHHHHHHHHhhhhhcccccCCCCCeEEEEecCCCccHH
Confidence            357889999999999999988875  3459999999 899999999999     666664     7888866654421  


Q ss_pred             C----CCCCCceE
Q 019802          306 P----KDPAYSEV  314 (335)
Q Consensus       306 ~----~~~~fd~V  314 (335)
                      .    ....||.|
T Consensus       155 ~~~~~~~~~fD~I  167 (281)
T 3bzb_A          155 LQRCTGLQRFQVV  167 (281)
T ss_dssp             HHHHHSCSSBSEE
T ss_pred             HHhhccCCCCCEE
Confidence            0    24568874

>4auk_A Ribosomal RNA large subunit methyltransferase M; YGDE; HET: TLA PGE; 1.90A {Escherichia coli} PDB: 4atn_A* 4b17_A*

Probab=98.31  E-value=7.2e-07  Score=83.99  Aligned_cols=78  Identities=14%  Similarity=0.177  Sum_probs=60.8

Q ss_pred             CCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCceEEEEE
Q 019802          239 PKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVSLIF  318 (335)
Q Consensus       239 ~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~~~~~~fd~V~~Il  318 (335)
                      +++|++|||+||+|||.|-.++++   .++|+|+|+.+ +    ...+  ....+|+++++|+..+.+...   .||.|+
T Consensus       209 l~~G~~vlDLGAaPGGWT~~l~~r---g~~V~aVD~~~-l----~~~l--~~~~~V~~~~~d~~~~~~~~~---~~D~vv  275 (375)
T 4auk_A          209 LANGMWAVDLGACPGGWTYQLVKR---NMWVYSVDNGP-M----AQSL--MDTGQVTWLREDGFKFRPTRS---NISWMV  275 (375)
T ss_dssp             SCTTCEEEEETCTTCHHHHHHHHT---TCEEEEECSSC-C----CHHH--HTTTCEEEECSCTTTCCCCSS---CEEEEE
T ss_pred             CCCCCEEEEeCcCCCHHHHHHHHC---CCEEEEEEhhh-c----Chhh--ccCCCeEEEeCccccccCCCC---CcCEEE
Confidence            578999999999999999999876   47999999753 1    1112  234579999999999887643   467799


Q ss_pred             Eeccccccccc
Q 019802          319 CIFTWMIIMFH  329 (335)
Q Consensus       319 lD~~cs~~g~~  329 (335)
                      +|..+..+++.
T Consensus       276 sDm~~~p~~~~  286 (375)
T 4auk_A          276 CDMVEKPAKVA  286 (375)
T ss_dssp             ECCSSCHHHHH
T ss_pred             EcCCCChHHhH
Confidence            99988877663

>3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A*

Probab=98.31  E-value=6.8e-07  Score=82.56  Aligned_cols=81  Identities=15%  Similarity=0.038  Sum_probs=63.7

Q ss_pred             CCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHh----CCCcEEEEeccCCCCCC--CCCCCc
Q 019802          239 PKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLS----GAANIEVLHGDFLNLDP--KDPAYS  312 (335)
Q Consensus       239 ~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~----g~~ni~~~~~D~~~~~~--~~~~fd  312 (335)
                      ..++.+|||+|||.|+.+..+++. .+..+|+++|+++.+++.+++++..+    .-.+++++++|+.++..  .+++||
T Consensus        93 ~~~~~~VLdiG~G~G~~~~~l~~~-~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~fD  171 (304)
T 3bwc_A           93 HPKPERVLIIGGGDGGVLREVLRH-GTVEHCDLVDIDGEVMEQSKQHFPQISRSLADPRATVRVGDGLAFVRQTPDNTYD  171 (304)
T ss_dssp             SSSCCEEEEEECTTSHHHHHHHTC-TTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHSSCTTCEE
T ss_pred             CCCCCeEEEEcCCCCHHHHHHHhC-CCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHHhccCCcee
Confidence            356789999999999999999875 34579999999999999999988542    33579999999987653  245666


Q ss_pred             eEEEEEEeccc
Q 019802          313 EVSLIFCIFTW  323 (335)
Q Consensus       313 ~V~~IllD~~c  323 (335)
                      .   |++|.+.
T Consensus       172 v---Ii~d~~~  179 (304)
T 3bwc_A          172 V---VIIDTTD  179 (304)
T ss_dssp             E---EEEECC-
T ss_pred             E---EEECCCC
Confidence            4   7777653

>3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A*

Probab=98.30  E-value=3e-06  Score=75.29  Aligned_cols=69  Identities=13%  Similarity=0.139  Sum_probs=59.9

Q ss_pred             CCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCceE
Q 019802          240 KPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEV  314 (335)
Q Consensus       240 ~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~~~~~~fd~V  314 (335)
                      .+..+|||+|||.|-.+..+.    +...++|+|+|+.+++.+++++.+.|. +..+.+.|....+++. .||.|
T Consensus       104 ~~p~~VLDlGCG~gpLal~~~----~~~~y~a~DId~~~i~~ar~~~~~~g~-~~~~~v~D~~~~~~~~-~~Dvv  172 (253)
T 3frh_A          104 ETPRRVLDIACGLNPLALYER----GIASVWGCDIHQGLGDVITPFAREKDW-DFTFALQDVLCAPPAE-AGDLA  172 (253)
T ss_dssp             CCCSEEEEETCTTTHHHHHHT----TCSEEEEEESBHHHHHHHHHHHHHTTC-EEEEEECCTTTSCCCC-BCSEE
T ss_pred             CCCCeEEEecCCccHHHHHhc----cCCeEEEEeCCHHHHHHHHHHHHhcCC-CceEEEeecccCCCCC-CcchH
Confidence            457799999999999998665    568999999999999999999999995 7899999998877665 68864

>3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus}

Probab=98.30  E-value=6.4e-07  Score=79.18  Aligned_cols=67  Identities=15%  Similarity=0.151  Sum_probs=56.3

Q ss_pred             CCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCC--CCCCCCCceEEE
Q 019802          239 PKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNL--DPKDPAYSEVSL  316 (335)
Q Consensus       239 ~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~--~~~~~~fd~V~~  316 (335)
                      .+++.+|||+|||+|..+..+++.   ..+|+++|+|+.+++.++++        +.++++|+.++  +..+++||.|.+
T Consensus        39 ~~~~~~vLDiGcG~G~~~~~l~~~---~~~v~gvD~s~~~~~~a~~~--------~~~~~~d~~~~~~~~~~~~fD~i~~  107 (240)
T 3dli_A           39 FKGCRRVLDIGCGRGEFLELCKEE---GIESIGVDINEDMIKFCEGK--------FNVVKSDAIEYLKSLPDKYLDGVMI  107 (240)
T ss_dssp             TTTCSCEEEETCTTTHHHHHHHHH---TCCEEEECSCHHHHHHHHTT--------SEEECSCHHHHHHTSCTTCBSEEEE
T ss_pred             hcCCCeEEEEeCCCCHHHHHHHhC---CCcEEEEECCHHHHHHHHhh--------cceeeccHHHHhhhcCCCCeeEEEE
Confidence            467899999999999999999887   35799999999999998877        67889998875  556678997543

>3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413}

Probab=98.30  E-value=1.1e-06  Score=77.73  Aligned_cols=63  Identities=19%  Similarity=0.220  Sum_probs=54.5

Q ss_pred             CCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCC
Q 019802          238 APKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDP  306 (335)
Q Consensus       238 ~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~~  306 (335)
                      .+.++.+|||+|||+|..+..++....   +|+++|+|+.+++.+++++   ...+++++++|+.+++.
T Consensus        53 ~~~~~~~vLD~GcG~G~~~~~la~~~~---~v~gvD~s~~~~~~a~~~~---~~~~~~~~~~d~~~~~~  115 (245)
T 3ggd_A           53 LFNPELPLIDFACGNGTQTKFLSQFFP---RVIGLDVSKSALEIAAKEN---TAANISYRLLDGLVPEQ  115 (245)
T ss_dssp             TSCTTSCEEEETCTTSHHHHHHHHHSS---CEEEEESCHHHHHHHHHHS---CCTTEEEEECCTTCHHH
T ss_pred             ccCCCCeEEEEcCCCCHHHHHHHHhCC---CEEEEECCHHHHHHHHHhC---cccCceEEECccccccc
Confidence            357889999999999999999998743   7999999999999999887   34479999999988654

>1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A*

Probab=98.29  E-value=7.4e-07  Score=82.71  Aligned_cols=80  Identities=15%  Similarity=0.103  Sum_probs=63.8

Q ss_pred             CCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHh--C---CCcEEEEeccCCCC-CCCCCCCce
Q 019802          240 KPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLS--G---AANIEVLHGDFLNL-DPKDPAYSE  313 (335)
Q Consensus       240 ~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~--g---~~ni~~~~~D~~~~-~~~~~~fd~  313 (335)
                      ..+.+|||+|||.|+.+..+++.. +..+|+++|+++.+++.+++++..+  |   -.+++++++|+.+. +...++|| 
T Consensus        76 ~~~~~VLdiG~G~G~~~~~l~~~~-~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD-  153 (314)
T 1uir_A           76 PEPKRVLIVGGGEGATLREVLKHP-TVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERYD-  153 (314)
T ss_dssp             SCCCEEEEEECTTSHHHHHHTTST-TCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCCEE-
T ss_pred             CCCCeEEEEcCCcCHHHHHHHhcC-CCCEEEEEECCHHHHHHHHHHhHhhccccccCCceEEEEchHHHHHHhcCCCcc-
Confidence            456899999999999999998763 4579999999999999999998762  2   46799999999874 33345566 


Q ss_pred             EEEEEEeccc
Q 019802          314 VSLIFCIFTW  323 (335)
Q Consensus       314 V~~IllD~~c  323 (335)
                        .|++|++.
T Consensus       154 --~Ii~d~~~  161 (314)
T 1uir_A          154 --VVIIDLTD  161 (314)
T ss_dssp             --EEEEECCC
T ss_pred             --EEEECCCC
Confidence              58888765

>2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A*

Probab=98.26  E-value=7e-07  Score=81.61  Aligned_cols=81  Identities=19%  Similarity=0.140  Sum_probs=64.1

Q ss_pred             CCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhC----CCcEEEEeccCCCCC-CCCCCCce
Q 019802          239 PKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSG----AANIEVLHGDFLNLD-PKDPAYSE  313 (335)
Q Consensus       239 ~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g----~~ni~~~~~D~~~~~-~~~~~fd~  313 (335)
                      ..++.+|||+|||.|+.+..++.. .+..+|+++|+++.+++.+++++...+    ..+++++++|+.+.. ...++|| 
T Consensus        76 ~~~~~~VLdiG~G~G~~~~~l~~~-~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD-  153 (283)
T 2i7c_A           76 SKEPKNVLVVGGGDGGIIRELCKY-KSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYD-  153 (283)
T ss_dssp             SSSCCEEEEEECTTSHHHHHHTTC-TTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEE-
T ss_pred             CCCCCeEEEEeCCcCHHHHHHHHc-CCCCEEEEEECCHHHHHHHHHHhHHhccccCCCcEEEEECChHHHHHhCCCCce-
Confidence            345689999999999999999865 345799999999999999999987653    467999999997743 2244565 


Q ss_pred             EEEEEEeccc
Q 019802          314 VSLIFCIFTW  323 (335)
Q Consensus       314 V~~IllD~~c  323 (335)
                        .|++|++.
T Consensus       154 --~Ii~d~~~  161 (283)
T 2i7c_A          154 --VIIVDSSD  161 (283)
T ss_dssp             --EEEEECCC
T ss_pred             --EEEEcCCC
Confidence              58888754

>1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A*

Probab=98.23  E-value=3.5e-06  Score=79.09  Aligned_cols=70  Identities=23%  Similarity=0.256  Sum_probs=61.3

Q ss_pred             HHHHHcCCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCC-cEEEEeccCCC
Q 019802          232 MVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAA-NIEVLHGDFLN  303 (335)
Q Consensus       232 l~~~~l~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~-ni~~~~~D~~~  303 (335)
                      .+...++..++.+|||+|||+|..+..+++.. +..+++++|+ +.+++.++++++..|+. +|+++.+|+.+
T Consensus       174 ~l~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~-~~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~  244 (360)
T 1tw3_A          174 APAAAYDWTNVRHVLDVGGGKGGFAAAIARRA-PHVSATVLEM-AGTVDTARSYLKDEGLSDRVDVVEGDFFE  244 (360)
T ss_dssp             HHHHHSCCTTCSEEEEETCTTSHHHHHHHHHC-TTCEEEEEEC-TTHHHHHHHHHHHTTCTTTEEEEECCTTS
T ss_pred             HHHHhCCCccCcEEEEeCCcCcHHHHHHHHhC-CCCEEEEecC-HHHHHHHHHHHHhcCCCCceEEEeCCCCC
Confidence            34455677788999999999999999999885 4579999999 99999999999999886 79999999976

>3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus}

Probab=98.23  E-value=2e-06  Score=74.67  Aligned_cols=70  Identities=19%  Similarity=0.231  Sum_probs=55.1

Q ss_pred             HHHcCCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCC--CCCCCCCC
Q 019802          234 AAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLN--LDPKDPAY  311 (335)
Q Consensus       234 ~~~l~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~--~~~~~~~f  311 (335)
                      ...+. .++.+|||+|||+|..+..+++.  + .+++++|+++.+++.++++.       ..+.++|+.+  .+..+++|
T Consensus        26 ~~~~~-~~~~~vLdiG~G~G~~~~~l~~~--~-~~~~~~D~~~~~~~~~~~~~-------~~~~~~d~~~~~~~~~~~~f   94 (230)
T 3cc8_A           26 LKHIK-KEWKEVLDIGCSSGALGAAIKEN--G-TRVSGIEAFPEAAEQAKEKL-------DHVVLGDIETMDMPYEEEQF   94 (230)
T ss_dssp             HTTCC-TTCSEEEEETCTTSHHHHHHHTT--T-CEEEEEESSHHHHHHHHTTS-------SEEEESCTTTCCCCSCTTCE
T ss_pred             HHHhc-cCCCcEEEeCCCCCHHHHHHHhc--C-CeEEEEeCCHHHHHHHHHhC-------CcEEEcchhhcCCCCCCCcc
Confidence            33444 67899999999999999999887  3 79999999999999888764       2678899887  34445667


Q ss_pred             ceE
Q 019802          312 SEV  314 (335)
Q Consensus       312 d~V  314 (335)
                      |.|
T Consensus        95 D~v   97 (230)
T 3cc8_A           95 DCV   97 (230)
T ss_dssp             EEE
T ss_pred             CEE
Confidence            753

>3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei}

Probab=98.23  E-value=1.3e-06  Score=86.92  Aligned_cols=104  Identities=14%  Similarity=0.174  Sum_probs=81.3

Q ss_pred             ccceEEecCchHHHHHHHcCCCCCCEEEEEcCCCchHHHHHHHHcCC--------------CeEEEEEeCCHHHHHHHHH
Q 019802          219 VNGCVFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKG--------------KGKIVACELNKERVRRLKD  284 (335)
Q Consensus       219 ~~g~~~iQd~~s~l~~~~l~~~~g~~VLD~cagpG~kt~~la~~~~~--------------~g~i~a~D~~~~rl~~~~~  284 (335)
                      ..|.|+--..-+.+++.++.+.++ +|+|.|||+|+....+++.+..              ...|+++|+++..++.++.
T Consensus       223 ~~G~fyTP~~Vv~lmv~ll~p~~~-~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~i~G~Eid~~~~~lA~~  301 (544)
T 3khk_A          223 QGGQYYTPKSIVTLIVEMLEPYKG-RVYDPAMGSGGFFVSSDKFIEKHANVKHYNASEQKKQISVYGQESNPTTWKLAAM  301 (544)
T ss_dssp             CSTTTCCCHHHHHHHHHHHCCCSE-EEEESSCTTCHHHHHHHHHHHHHHHHHTSCHHHHGGGEEEEECCCCHHHHHHHHH
T ss_pred             cCCeEeCCHHHHHHHHHHHhcCCC-eEeCcccCcCcHHHHHHHHHHHhccccccchHHHhhhceEEEEeCCHHHHHHHHH
Confidence            346666666677888889998887 9999999999999888765421              4689999999999999999


Q ss_pred             HHHHhCCC-cEEEEeccCCCCCC-CCCCCceEEEEEEecccccc
Q 019802          285 TIKLSGAA-NIEVLHGDFLNLDP-KDPAYSEVSLIFCIFTWMII  326 (335)
Q Consensus       285 ~~~~~g~~-ni~~~~~D~~~~~~-~~~~fd~V~~IllD~~cs~~  326 (335)
                      |+...|+. ++.+.++|....+. ....   ++.|+.+||.+..
T Consensus       302 Nl~l~gi~~~i~i~~gDtL~~~~~~~~~---fD~Iv~NPPf~~~  342 (544)
T 3khk_A          302 NMVIRGIDFNFGKKNADSFLDDQHPDLR---ADFVMTNPPFNMK  342 (544)
T ss_dssp             HHHHTTCCCBCCSSSCCTTTSCSCTTCC---EEEEEECCCSSCC
T ss_pred             HHHHhCCCcccceeccchhcCccccccc---ccEEEECCCcCCc
Confidence            99998885 34448888766543 2334   4569999999864

>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440}

Probab=98.22  E-value=1.2e-06  Score=76.05  Aligned_cols=61  Identities=20%  Similarity=0.126  Sum_probs=50.9

Q ss_pred             HHcCCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCC
Q 019802          235 AALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNL  304 (335)
Q Consensus       235 ~~l~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~  304 (335)
                      ..+...++.+|||+|||+|..+..+++.   ..+|+++|+++.+++.++++      .++.+.+.|+.++
T Consensus        46 ~~~~~~~~~~vLdiG~G~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~------~~~~~~~~~~~~~  106 (227)
T 3e8s_A           46 LAILGRQPERVLDLGCGEGWLLRALADR---GIEAVGVDGDRTLVDAARAA------GAGEVHLASYAQL  106 (227)
T ss_dssp             HHHHHTCCSEEEEETCTTCHHHHHHHTT---TCEEEEEESCHHHHHHHHHT------CSSCEEECCHHHH
T ss_pred             HHhhcCCCCEEEEeCCCCCHHHHHHHHC---CCEEEEEcCCHHHHHHHHHh------cccccchhhHHhh
Confidence            3444566799999999999999999876   46899999999999999887      3567888888776

>2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17

Probab=98.21  E-value=6.4e-07  Score=83.20  Aligned_cols=80  Identities=14%  Similarity=0.181  Sum_probs=63.4

Q ss_pred             CCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHh--CC--CcEEEEeccCCCC-CCCCCCCceE
Q 019802          240 KPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLS--GA--ANIEVLHGDFLNL-DPKDPAYSEV  314 (335)
Q Consensus       240 ~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~--g~--~ni~~~~~D~~~~-~~~~~~fd~V  314 (335)
                      ..+.+|||+|||.|+.+..++.. .+..+|+++|+++.+++.+++++...  |+  .+++++++|+.+. +...++||  
T Consensus       107 ~~~~~VLdIG~G~G~~~~~l~~~-~~~~~v~~vDid~~~i~~Ar~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD--  183 (314)
T 2b2c_A          107 PDPKRVLIIGGGDGGILREVLKH-ESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNHKNEFD--  183 (314)
T ss_dssp             SSCCEEEEESCTTSHHHHHHTTC-TTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHCTTCEE--
T ss_pred             CCCCEEEEEcCCcCHHHHHHHHc-CCCCEEEEEECCHHHHHHHHHHHHHhccccCCCCEEEEEChHHHHHHhcCCCce--
Confidence            35679999999999999999875 34579999999999999999998764  33  5799999999774 22344566  


Q ss_pred             EEEEEeccc
Q 019802          315 SLIFCIFTW  323 (335)
Q Consensus       315 ~~IllD~~c  323 (335)
                       .|++|++.
T Consensus       184 -~Ii~d~~~  191 (314)
T 2b2c_A          184 -VIITDSSD  191 (314)
T ss_dssp             -EEEECCC-
T ss_pred             -EEEEcCCC
Confidence             58888753

>3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032}

Probab=98.17  E-value=1.9e-06  Score=79.90  Aligned_cols=78  Identities=10%  Similarity=0.071  Sum_probs=62.7

Q ss_pred             CEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCC--CCCCCceEEEEEEe
Q 019802          243 WKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDP--KDPAYSEVSLIFCI  320 (335)
Q Consensus       243 ~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~~--~~~~fd~V~~IllD  320 (335)
                      .+|||+|||.|+.+..+++... ..+|+++|+++.+++.+++++...+-.+++++++|+.++..  .+.+||   .|++|
T Consensus        91 ~rVLdIG~G~G~la~~la~~~p-~~~v~~VEidp~vi~~Ar~~~~~~~~~rv~v~~~Da~~~l~~~~~~~fD---vIi~D  166 (317)
T 3gjy_A           91 LRITHLGGGACTMARYFADVYP-QSRNTVVELDAELARLSREWFDIPRAPRVKIRVDDARMVAESFTPASRD---VIIRD  166 (317)
T ss_dssp             CEEEEESCGGGHHHHHHHHHST-TCEEEEEESCHHHHHHHHHHSCCCCTTTEEEEESCHHHHHHTCCTTCEE---EEEEC
T ss_pred             CEEEEEECCcCHHHHHHHHHCC-CcEEEEEECCHHHHHHHHHhccccCCCceEEEECcHHHHHhhccCCCCC---EEEEC
Confidence            4999999999999999998754 46999999999999999999865444679999999987532  234566   58888


Q ss_pred             cccc
Q 019802          321 FTWM  324 (335)
Q Consensus       321 ~~cs  324 (335)
                      .+..
T Consensus       167 ~~~~  170 (317)
T 3gjy_A          167 VFAG  170 (317)
T ss_dssp             CSTT
T ss_pred             CCCc
Confidence            6543

>2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A*

Probab=98.15  E-value=9.7e-07  Score=78.73  Aligned_cols=75  Identities=19%  Similarity=0.219  Sum_probs=58.0

Q ss_pred             CCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCC--------------------------
Q 019802          238 APKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGA--------------------------  291 (335)
Q Consensus       238 ~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~--------------------------  291 (335)
                      ...++.+|||+|||+|..+..++.. + ..+|+++|+|+.+++.+++++...+.                          
T Consensus        53 ~~~~~~~vLDlGcG~G~~~~~l~~~-~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (265)
T 2i62_A           53 GAVKGELLIDIGSGPTIYQLLSACE-S-FTEIIVSDYTDQNLWELQKWLKKEPGAFDWSPVVTYVCDLEGNRMKGPEKEE  130 (265)
T ss_dssp             SSCCEEEEEEESCTTCCGGGTTGGG-T-EEEEEEEESCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHTTTCSCHHHHHH
T ss_pred             cccCCCEEEEECCCccHHHHHHhhc-c-cCeEEEecCCHHHHHHHHHHHhcCCccccchhhhhhhhcccccccchHHHHH
Confidence            3457889999999999999888765 2 25899999999999999998865431                          


Q ss_pred             ---CcE-EEEeccCCCCCC-CC---CCCceE
Q 019802          292 ---ANI-EVLHGDFLNLDP-KD---PAYSEV  314 (335)
Q Consensus       292 ---~ni-~~~~~D~~~~~~-~~---~~fd~V  314 (335)
                         .++ .+.++|+.+..+ .+   ++||.|
T Consensus       131 ~l~~~v~~~~~~d~~~~~~~~~~~~~~fD~v  161 (265)
T 2i62_A          131 KLRRAIKQVLKCDVTQSQPLGGVSLPPADCL  161 (265)
T ss_dssp             HHHHHEEEEEECCTTSSSTTTTCCCCCEEEE
T ss_pred             HhhhhheeEEEeeeccCCCCCccccCCccEE
Confidence               127 899999988764 34   567753

>3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A*

Probab=98.13  E-value=2.4e-05  Score=73.96  Aligned_cols=78  Identities=18%  Similarity=0.132  Sum_probs=64.9

Q ss_pred             HHHHcCCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCC-CcEEEEeccCCCCCCCCCCC
Q 019802          233 VAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGA-ANIEVLHGDFLNLDPKDPAY  311 (335)
Q Consensus       233 ~~~~l~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~-~ni~~~~~D~~~~~~~~~~f  311 (335)
                      +...++..++.+|||+|||+|..+..+++.. +..+++++|+ +.+++.+++++...|+ .+|++..+|+.+. .+. .|
T Consensus       194 l~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~-~p~-~~  269 (369)
T 3gwz_A          194 VAAAYDFSGAATAVDIGGGRGSLMAAVLDAF-PGLRGTLLER-PPVAEEARELLTGRGLADRCEILPGDFFET-IPD-GA  269 (369)
T ss_dssp             HHHHSCCTTCSEEEEETCTTSHHHHHHHHHC-TTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTTC-CCS-SC
T ss_pred             HHHhCCCccCcEEEEeCCCccHHHHHHHHHC-CCCeEEEEcC-HHHHHHHHHhhhhcCcCCceEEeccCCCCC-CCC-Cc
Confidence            4445667788999999999999999999985 4579999999 9999999999999987 5699999999842 222 68


Q ss_pred             ceE
Q 019802          312 SEV  314 (335)
Q Consensus       312 d~V  314 (335)
                      |.|
T Consensus       270 D~v  272 (369)
T 3gwz_A          270 DVY  272 (369)
T ss_dssp             SEE
T ss_pred             eEE
Confidence            864

>3ufb_A Type I restriction-modification system methyltran subunit; methyltransferase activity, transferase; 1.80A {Vibrio vulnificus}

Probab=98.12  E-value=6.3e-06  Score=81.86  Aligned_cols=104  Identities=13%  Similarity=0.125  Sum_probs=83.2

Q ss_pred             cceEEecCchHHHHHHHcCCCCCCEEEEEcCCCchHHHHHHHHcCC------------CeEEEEEeCCHHHHHHHHHHHH
Q 019802          220 NGCVFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKG------------KGKIVACELNKERVRRLKDTIK  287 (335)
Q Consensus       220 ~g~~~iQd~~s~l~~~~l~~~~g~~VLD~cagpG~kt~~la~~~~~------------~g~i~a~D~~~~rl~~~~~~~~  287 (335)
                      .|.|+=-..-+.+++.+++|++|++|+|-|||+||....+.+.+..            ...++++|+++.....++-|+-
T Consensus       196 ~GqfyTP~~Vv~lmv~l~~p~~~~~I~DPacGsGgfL~~a~~~l~~~~~~~~~~~~~~~~~i~G~E~~~~~~~la~mNl~  275 (530)
T 3ufb_A          196 SGEFYTPRPVVRFMVEVMDPQLGESVLDPACGTGGFLVEAFEHLERQCKTVEDREVLQESSIFGGEAKSLPYLLVQMNLL  275 (530)
T ss_dssp             CCCCCCCHHHHHHHHHHHCCCTTCCEEETTCTTTHHHHHHHHHHHTTCCSHHHHHHHHTCCEEEECCSHHHHHHHHHHHH
T ss_pred             CceECCcHHHHHHHHHhhccCCCCEEEeCCCCcchHHHHHHHHHHHhccchhHHHHHhhhhhhhhhccHHHHHHHHHHHH
Confidence            4655555566788899999999999999999999999888776532            2469999999999999999999


Q ss_pred             HhCCCcEEEEeccCCCCCCC----CCCCceEEEEEEecccccc
Q 019802          288 LSGAANIEVLHGDFLNLDPK----DPAYSEVSLIFCIFTWMII  326 (335)
Q Consensus       288 ~~g~~ni~~~~~D~~~~~~~----~~~fd~V~~IllD~~cs~~  326 (335)
                      -.|+..-.+.++|....+..    ...||   .|+.+||-++.
T Consensus       276 lhg~~~~~I~~~dtL~~~~~~~~~~~~fD---~Il~NPPf~~~  315 (530)
T 3ufb_A          276 LHGLEYPRIDPENSLRFPLREMGDKDRVD---VILTNPPFGGE  315 (530)
T ss_dssp             HHTCSCCEEECSCTTCSCGGGCCGGGCBS---EEEECCCSSCB
T ss_pred             hcCCccccccccccccCchhhhcccccce---EEEecCCCCcc
Confidence            88987777888988765432    12455   59999999764

>2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa}

Probab=98.11  E-value=4.1e-06  Score=77.83  Aligned_cols=77  Identities=13%  Similarity=0.130  Sum_probs=63.1

Q ss_pred             HHHHcCCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCC-CcEEEEeccCCCCCCCCCCC
Q 019802          233 VAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGA-ANIEVLHGDFLNLDPKDPAY  311 (335)
Q Consensus       233 ~~~~l~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~-~ni~~~~~D~~~~~~~~~~f  311 (335)
                      +...++..+ .+|||+|||+|..+..+++..+ ..+++++|+ +.+++.+++++.+.|+ .+|+++.+|+.+ +.+ ..|
T Consensus       160 ~~~~~~~~~-~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~~-~~~  234 (334)
T 2ip2_A          160 IPRLLDFRG-RSFVDVGGGSGELTKAILQAEP-SARGVMLDR-EGSLGVARDNLSSLLAGERVSLVGGDMLQ-EVP-SNG  234 (334)
T ss_dssp             HHHHSCCTT-CEEEEETCTTCHHHHHHHHHCT-TCEEEEEEC-TTCTHHHHHHTHHHHHTTSEEEEESCTTT-CCC-SSC
T ss_pred             HHHhCCCCC-CEEEEeCCCchHHHHHHHHHCC-CCEEEEeCc-HHHHHHHHHHHhhcCCCCcEEEecCCCCC-CCC-CCC
Confidence            344455566 8999999999999999998864 579999999 9999999999988876 469999999987 333 458


Q ss_pred             ceE
Q 019802          312 SEV  314 (335)
Q Consensus       312 d~V  314 (335)
                      |.|
T Consensus       235 D~v  237 (334)
T 2ip2_A          235 DIY  237 (334)
T ss_dssp             SEE
T ss_pred             CEE
Confidence            863

>3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3}

Probab=98.10  E-value=7.9e-06  Score=70.84  Aligned_cols=61  Identities=18%  Similarity=0.219  Sum_probs=52.1

Q ss_pred             CCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCC---CcEEEEeccCCCC
Q 019802          240 KPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGA---ANIEVLHGDFLNL  304 (335)
Q Consensus       240 ~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~---~ni~~~~~D~~~~  304 (335)
                      .+..+||++||  |+-|..+|+. . +++|+++|.++++.+.+++++++.|+   .+|+++.+|+.+.
T Consensus        29 ~~a~~VLEiGt--GySTl~lA~~-~-~g~VvtvE~d~~~~~~ar~~l~~~g~~~~~~I~~~~gda~~~   92 (202)
T 3cvo_A           29 EEAEVILEYGS--GGSTVVAAEL-P-GKHVTSVESDRAWARMMKAWLAANPPAEGTEVNIVWTDIGPT   92 (202)
T ss_dssp             HHCSEEEEESC--SHHHHHHHTS-T-TCEEEEEESCHHHHHHHHHHHHHSCCCTTCEEEEEECCCSSB
T ss_pred             hCCCEEEEECc--hHHHHHHHHc-C-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCCceEEEEeCchhh
Confidence            45789999998  6778888874 3 68999999999999999999999995   5799999997653

>3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A*

Probab=98.09  E-value=4.1e-06  Score=75.22  Aligned_cols=70  Identities=9%  Similarity=0.038  Sum_probs=59.9

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCce
Q 019802          241 PGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSE  313 (335)
Q Consensus       241 ~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~~~~~~fd~  313 (335)
                      +..+|||+|||.|-.+..++.. .+..+++|+|+++.+++.+++|+.++|+. ..+.+.|...-+++. .||.
T Consensus       132 ~p~~VLDLGCG~GpLAl~~~~~-~p~a~y~a~DId~~~le~a~~~l~~~g~~-~~~~v~D~~~~~p~~-~~Dv  201 (281)
T 3lcv_B          132 RPNTLRDLACGLNPLAAPWMGL-PAETVYIASDIDARLVGFVDEALTRLNVP-HRTNVADLLEDRLDE-PADV  201 (281)
T ss_dssp             CCSEEEETTCTTGGGCCTTTTC-CTTCEEEEEESBHHHHHHHHHHHHHTTCC-EEEEECCTTTSCCCS-CCSE
T ss_pred             CCceeeeeccCccHHHHHHHhh-CCCCEEEEEeCCHHHHHHHHHHHHhcCCC-ceEEEeeecccCCCC-Ccch
Confidence            3669999999999999988765 35789999999999999999999999996 789999987766543 4885

>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A*

Probab=98.09  E-value=1.3e-05  Score=74.34  Aligned_cols=73  Identities=12%  Similarity=0.054  Sum_probs=61.0

Q ss_pred             CCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCC-CcEEEEeccCCCCCCCCCCCceE
Q 019802          238 APKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGA-ANIEVLHGDFLNLDPKDPAYSEV  314 (335)
Q Consensus       238 ~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~-~ni~~~~~D~~~~~~~~~~fd~V  314 (335)
                      +..++.+|||+|||+|..+..+++..+ ..+++++|+ +.+++.+++++...|+ .+|++..+|+.+. .+. .||.|
T Consensus       166 ~~~~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~p~-~~D~v  239 (332)
T 3i53_A          166 DWAALGHVVDVGGGSGGLLSALLTAHE-DLSGTVLDL-QGPASAAHRRFLDTGLSGRAQVVVGSFFDP-LPA-GAGGY  239 (332)
T ss_dssp             CCGGGSEEEEETCTTSHHHHHHHHHCT-TCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTSC-CCC-SCSEE
T ss_pred             CCCCCCEEEEeCCChhHHHHHHHHHCC-CCeEEEecC-HHHHHHHHHhhhhcCcCcCeEEecCCCCCC-CCC-CCcEE
Confidence            345578999999999999999999864 579999999 9999999999999987 5699999999742 222 68864

>3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus}

Probab=98.06  E-value=1.7e-05  Score=74.83  Aligned_cols=72  Identities=11%  Similarity=0.155  Sum_probs=61.5

Q ss_pred             CCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCC-CcEEEEeccCCCCC--CCCCCCceE
Q 019802          240 KPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGA-ANIEVLHGDFLNLD--PKDPAYSEV  314 (335)
Q Consensus       240 ~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~-~ni~~~~~D~~~~~--~~~~~fd~V  314 (335)
                      ..+.+|||+|||+|..+..+++.. +..+++++|+ +.+++.+++++...|+ .+|+++.+|+.+..  .+ ..||.|
T Consensus       178 ~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~p-~~~D~v  252 (363)
T 3dp7_A          178 HHPKRLLDIGGNTGKWATQCVQYN-KEVEVTIVDL-PQQLEMMRKQTAGLSGSERIHGHGANLLDRDVPFP-TGFDAV  252 (363)
T ss_dssp             GCCSEEEEESCTTCHHHHHHHHHS-TTCEEEEEEC-HHHHHHHHHHHTTCTTGGGEEEEECCCCSSSCCCC-CCCSEE
T ss_pred             cCCCEEEEeCCCcCHHHHHHHHhC-CCCEEEEEeC-HHHHHHHHHHHHhcCcccceEEEEccccccCCCCC-CCcCEE
Confidence            456899999999999999999985 4579999999 9999999999998887 46999999998863  33 568864

>3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis}

Probab=98.06  E-value=1.2e-05  Score=75.19  Aligned_cols=76  Identities=13%  Similarity=0.107  Sum_probs=62.7

Q ss_pred             HcCCCC-CCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCC-cEEEEeccCCCCCC-CCCCCc
Q 019802          236 ALAPKP-GWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAA-NIEVLHGDFLNLDP-KDPAYS  312 (335)
Q Consensus       236 ~l~~~~-g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~-ni~~~~~D~~~~~~-~~~~fd  312 (335)
                      .++..+ +.+|||+|||+|..+..+++..+ ..+++++|+ +.+++.+++++.+.++. +|+++.+|+.+.++ ....||
T Consensus       173 ~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~D  250 (352)
T 3mcz_A          173 ELGVFARARTVIDLAGGHGTYLAQVLRRHP-QLTGQIWDL-PTTRDAARKTIHAHDLGGRVEFFEKNLLDARNFEGGAAD  250 (352)
T ss_dssp             TCGGGTTCCEEEEETCTTCHHHHHHHHHCT-TCEEEEEEC-GGGHHHHHHHHHHTTCGGGEEEEECCTTCGGGGTTCCEE
T ss_pred             hCCCcCCCCEEEEeCCCcCHHHHHHHHhCC-CCeEEEEEC-HHHHHHHHHHHHhcCCCCceEEEeCCcccCcccCCCCcc
Confidence            344556 88999999999999999998864 589999999 88999999999999885 49999999988752 223466


Q ss_pred             e
Q 019802          313 E  313 (335)
Q Consensus       313 ~  313 (335)
                      .
T Consensus       251 ~  251 (352)
T 3mcz_A          251 V  251 (352)
T ss_dssp             E
T ss_pred             E
Confidence            5

>1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A*

Probab=98.02  E-value=9.6e-06  Score=73.74  Aligned_cols=76  Identities=20%  Similarity=0.366  Sum_probs=55.5

Q ss_pred             CCCEEEEEcCCCch----HHHHHHHHcCC---CeEEEEEeCCHHHHHHHHHHHH--------------Hh---------C
Q 019802          241 PGWKVLDACSAPGN----KTVHLAALMKG---KGKIVACELNKERVRRLKDTIK--------------LS---------G  290 (335)
Q Consensus       241 ~g~~VLD~cagpG~----kt~~la~~~~~---~g~i~a~D~~~~rl~~~~~~~~--------------~~---------g  290 (335)
                      ++.+|||+|||+|-    .+..+++.++.   +.+|+|+|+|+.+|+.+++++-              +.         |
T Consensus       105 ~~~rIld~GCgTGee~ysiAi~L~e~~~~~~~~~~I~atDis~~~L~~Ar~~~y~~~~~~~~~~~~~~~~f~~~~~~~~~  184 (274)
T 1af7_A          105 GEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHEG  184 (274)
T ss_dssp             SCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSCS
T ss_pred             CCcEEEEeeccCChhHHHHHHHHHHhcccCCCCeEEEEEECCHHHHHHHHhcCCchhhhhcCCHHHHHHHhhccccCCCC
Confidence            45699999999998    56667776542   3699999999999999998741              10         1


Q ss_pred             ---C-----CcEEEEeccCCCCCCC-CCCCceEEEEEE
Q 019802          291 ---A-----ANIEVLHGDFLNLDPK-DPAYSEVSLIFC  319 (335)
Q Consensus       291 ---~-----~ni~~~~~D~~~~~~~-~~~fd~V~~Ill  319 (335)
                         +     .+|.+.++|..+.++. .+.||.   |+|
T Consensus       185 ~~~v~~~lr~~V~F~~~dl~~~~~~~~~~fDl---I~c  219 (274)
T 1af7_A          185 LVRVRQELANYVEFSSVNLLEKQYNVPGPFDA---IFC  219 (274)
T ss_dssp             EEEECHHHHTTEEEEECCTTCSSCCCCCCEEE---EEE
T ss_pred             ceeechhhcccCeEEecccCCCCCCcCCCeeE---EEE
Confidence               1     2599999999885443 345665   555

>2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca}

Probab=98.01  E-value=4.2e-05  Score=69.33  Aligned_cols=62  Identities=13%  Similarity=0.103  Sum_probs=50.4

Q ss_pred             CCCCEEEEEcCCC---chHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCC
Q 019802          240 KPGWKVLDACSAP---GNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNL  304 (335)
Q Consensus       240 ~~g~~VLD~cagp---G~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~  304 (335)
                      .+..+|||+|||+   |..+..+... .+.++|+++|+|+.+++.+++++..  ..+++++++|+.+.
T Consensus        76 ~~~~~vLDlGcG~pt~G~~~~~~~~~-~p~~~v~~vD~sp~~l~~Ar~~~~~--~~~v~~~~~D~~~~  140 (274)
T 2qe6_A           76 AGISQFLDLGSGLPTVQNTHEVAQSV-NPDARVVYVDIDPMVLTHGRALLAK--DPNTAVFTADVRDP  140 (274)
T ss_dssp             TCCCEEEEETCCSCCSSCHHHHHHHH-CTTCEEEEEESSHHHHHHHHHHHTT--CTTEEEEECCTTCH
T ss_pred             cCCCEEEEECCCCCCCChHHHHHHHh-CCCCEEEEEECChHHHHHHHHhcCC--CCCeEEEEeeCCCc
Confidence            3457999999999   9876555544 4568999999999999999999853  35799999999764

>1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41

Probab=97.99  E-value=1.1e-05  Score=70.18  Aligned_cols=60  Identities=20%  Similarity=0.227  Sum_probs=50.7

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCceE
Q 019802          241 PGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEV  314 (335)
Q Consensus       241 ~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~~~~~~fd~V  314 (335)
                      ++.+|||+|||+|..+..++..       +++|+++.+++.++++       ++.++++|+.+++..+++||.|
T Consensus        47 ~~~~vLDiG~G~G~~~~~l~~~-------~~vD~s~~~~~~a~~~-------~~~~~~~d~~~~~~~~~~fD~v  106 (219)
T 1vlm_A           47 PEGRGVEIGVGTGRFAVPLKIK-------IGVEPSERMAEIARKR-------GVFVLKGTAENLPLKDESFDFA  106 (219)
T ss_dssp             CSSCEEEETCTTSTTHHHHTCC-------EEEESCHHHHHHHHHT-------TCEEEECBTTBCCSCTTCEEEE
T ss_pred             CCCcEEEeCCCCCHHHHHHHHH-------hccCCCHHHHHHHHhc-------CCEEEEcccccCCCCCCCeeEE
Confidence            3889999999999999877532       9999999999999887       5789999999887766678763

>2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A

Probab=97.99  E-value=7e-06  Score=74.17  Aligned_cols=73  Identities=15%  Similarity=0.033  Sum_probs=59.5

Q ss_pred             CCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHH----hCCCcEEEEeccCCCCCCCCCCCceEE
Q 019802          240 KPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKL----SGAANIEVLHGDFLNLDPKDPAYSEVS  315 (335)
Q Consensus       240 ~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~----~g~~ni~~~~~D~~~~~~~~~~fd~V~  315 (335)
                      ..+.+|||+|||.|+.+..++..  + .+|+++|+++.+++.+++++..    +.-++++++.+|+.+..   ++||   
T Consensus        71 ~~~~~VL~iG~G~G~~~~~ll~~--~-~~v~~veid~~~i~~ar~~~~~~~~~~~~~rv~~~~~D~~~~~---~~fD---  141 (262)
T 2cmg_A           71 KELKEVLIVDGFDLELAHQLFKY--D-THIDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQLLDLDI---KKYD---  141 (262)
T ss_dssp             SCCCEEEEESSCCHHHHHHHTTS--S-CEEEEECSCHHHHGGGTTTSTTHHHHHTCTTEEEESSGGGSCC---CCEE---
T ss_pred             CCCCEEEEEeCCcCHHHHHHHhC--C-CEEEEEECCHHHHHHHHHHHHhhccccCCCeEEEEechHHHHH---hhCC---
Confidence            35679999999999999998876  4 7999999999999999987643    22357999999998865   4465   


Q ss_pred             EEEEec
Q 019802          316 LIFCIF  321 (335)
Q Consensus       316 ~IllD~  321 (335)
                      .|++|.
T Consensus       142 ~Ii~d~  147 (262)
T 2cmg_A          142 LIFCLQ  147 (262)
T ss_dssp             EEEESS
T ss_pred             EEEECC
Confidence            588885

>2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ...

Probab=97.93  E-value=1.9e-05  Score=71.65  Aligned_cols=46  Identities=17%  Similarity=0.149  Sum_probs=35.9

Q ss_pred             CCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHH
Q 019802          240 KPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIK  287 (335)
Q Consensus       240 ~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~  287 (335)
                      .++.+|||+|||+|..+ .++... ...+|+++|+|+.+++.++++++
T Consensus        70 ~~~~~vLDiGcG~G~~~-~l~~~~-~~~~v~gvD~s~~~l~~a~~~~~  115 (289)
T 2g72_A           70 VSGRTLIDIGSGPTVYQ-LLSACS-HFEDITMTDFLEVNRQELGRWLQ  115 (289)
T ss_dssp             SCCSEEEEETCTTCCGG-GTTGGG-GCSEEEEECSCHHHHHHHHHHHT
T ss_pred             CCCCeEEEECCCcChHH-HHhhcc-CCCeEEEeCCCHHHHHHHHHHHh
Confidence            37889999999999943 333332 24699999999999999988654

>3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A*

Probab=97.91  E-value=6.2e-06  Score=78.58  Aligned_cols=68  Identities=12%  Similarity=0.127  Sum_probs=54.4

Q ss_pred             CCCEEEEEcCC------CchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCC------C
Q 019802          241 PGWKVLDACSA------PGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPK------D  308 (335)
Q Consensus       241 ~g~~VLD~cag------pG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~~~------~  308 (335)
                      ++.+|||+|||      +|+.++.++....++++|+++|+|+.|.         ....+|+++++|+.++++.      +
T Consensus       216 ~~~rVLDIGCG~~~~~~TGG~Sl~la~~~fP~a~V~GVDiSp~m~---------~~~~rI~fv~GDa~dlpf~~~l~~~d  286 (419)
T 3sso_A          216 QQVRVLEIGVGGYKHPEWGGGSLRMWKSFFPRGQIYGLDIMDKSH---------VDELRIRTIQGDQNDAEFLDRIARRY  286 (419)
T ss_dssp             SCCEEEEECCSCTTCSSCCCHHHHHHHHHCTTCEEEEEESSCCGG---------GCBTTEEEEECCTTCHHHHHHHHHHH
T ss_pred             CCCEEEEEecCCCcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHh---------hcCCCcEEEEecccccchhhhhhccc
Confidence            56899999999      7888988887765678999999999972         2346899999999997765      5


Q ss_pred             CCCceEEEEEEe
Q 019802          309 PAYSEVSLIFCI  320 (335)
Q Consensus       309 ~~fd~V~~IllD  320 (335)
                      ++||.   |++|
T Consensus       287 ~sFDl---Visd  295 (419)
T 3sso_A          287 GPFDI---VIDD  295 (419)
T ss_dssp             CCEEE---EEEC
T ss_pred             CCccE---EEEC
Confidence            67875   5554

>3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A*

Probab=97.89  E-value=2.1e-05  Score=71.40  Aligned_cols=64  Identities=9%  Similarity=0.076  Sum_probs=54.7

Q ss_pred             CCCEEEEEcCCC--chHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCC
Q 019802          241 PGWKVLDACSAP--GNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNL  304 (335)
Q Consensus       241 ~g~~VLD~cagp--G~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~  304 (335)
                      ...+|||+|||.  |+.+..+++...+..+|+++|+|+.|++.+++++...+..++.++++|+.++
T Consensus        78 g~~q~LDLGcG~pT~~~~~~la~~~~P~arVv~VD~sp~mLa~Ar~~l~~~~~~~~~~v~aD~~~~  143 (277)
T 3giw_A           78 GIRQFLDIGTGIPTSPNLHEIAQSVAPESRVVYVDNDPIVLTLSQGLLASTPEGRTAYVEADMLDP  143 (277)
T ss_dssp             CCCEEEEESCCSCCSSCHHHHHHHHCTTCEEEEEECCHHHHHTTHHHHCCCSSSEEEEEECCTTCH
T ss_pred             CCCEEEEeCCCCCcccHHHHHHHHHCCCCEEEEEeCChHHHHHHHHHhccCCCCcEEEEEecccCh
Confidence            347899999997  6777888887777899999999999999999998755445799999999886

>4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A*

Probab=97.83  E-value=5.1e-06  Score=79.69  Aligned_cols=75  Identities=7%  Similarity=-0.003  Sum_probs=54.6

Q ss_pred             HHHcCCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEE--EEeccCCCCCCCCCCC
Q 019802          234 AAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIE--VLHGDFLNLDPKDPAY  311 (335)
Q Consensus       234 ~~~l~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~--~~~~D~~~~~~~~~~f  311 (335)
                      ...+.+.++.+|||+|||+|..+..+++.   ..+|+++|+|+.+++.++++    |+..+.  +...++..++..+++|
T Consensus       100 ~~~~~~~~~~~VLDiGcG~G~~~~~l~~~---g~~v~gvD~s~~~~~~a~~~----~~~~~~~~~~~~~~~~l~~~~~~f  172 (416)
T 4e2x_A          100 LATELTGPDPFIVEIGCNDGIMLRTIQEA---GVRHLGFEPSSGVAAKAREK----GIRVRTDFFEKATADDVRRTEGPA  172 (416)
T ss_dssp             HHTTTCSSSCEEEEETCTTTTTHHHHHHT---TCEEEEECCCHHHHHHHHTT----TCCEECSCCSHHHHHHHHHHHCCE
T ss_pred             HHHhCCCCCCEEEEecCCCCHHHHHHHHc---CCcEEEECCCHHHHHHHHHc----CCCcceeeechhhHhhcccCCCCE
Confidence            34456678999999999999999999876   35999999999999988876    554322  2234444454445678


Q ss_pred             ceEE
Q 019802          312 SEVS  315 (335)
Q Consensus       312 d~V~  315 (335)
                      |.|.
T Consensus       173 D~I~  176 (416)
T 4e2x_A          173 NVIY  176 (416)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            7643

>3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp}

Probab=97.83  E-value=2.2e-06  Score=76.00  Aligned_cols=46  Identities=17%  Similarity=0.122  Sum_probs=38.7

Q ss_pred             CCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHH
Q 019802          240 KPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIK  287 (335)
Q Consensus       240 ~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~  287 (335)
                      .+|.+|||+|||+|+.+..+++.  +..+|+++|+|+.|++.++++..
T Consensus        36 ~~g~~VLDiGcGtG~~t~~la~~--g~~~V~gvDis~~ml~~a~~~~~   81 (232)
T 3opn_A           36 INGKTCLDIGSSTGGFTDVMLQN--GAKLVYALDVGTNQLAWKIRSDE   81 (232)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHT--TCSEEEEECSSCCCCCHHHHTCT
T ss_pred             CCCCEEEEEccCCCHHHHHHHhc--CCCEEEEEcCCHHHHHHHHHhCc
Confidence            35779999999999999999887  33599999999999998766543

>3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus}

Probab=97.79  E-value=1e-05  Score=74.14  Aligned_cols=41  Identities=12%  Similarity=0.100  Sum_probs=36.0

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHH
Q 019802          241 PGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLK  283 (335)
Q Consensus       241 ~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~  283 (335)
                      +|.+|||+|||+|+.|..+++.  +.++|+|+|+++.|++...
T Consensus        85 ~g~~vLDiGcGTG~~t~~L~~~--ga~~V~aVDvs~~mL~~a~  125 (291)
T 3hp7_A           85 EDMITIDIGASTGGFTDVMLQN--GAKLVYAVDVGTNQLVWKL  125 (291)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHT--TCSEEEEECSSSSCSCHHH
T ss_pred             cccEEEecCCCccHHHHHHHhC--CCCEEEEEECCHHHHHHHH
Confidence            5789999999999999999886  4579999999999998743

>3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif, gamma-N6M-adenosine methyltrans S-adenosyl-methionine binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus}

Probab=97.78  E-value=1.8e-05  Score=81.16  Aligned_cols=103  Identities=16%  Similarity=0.182  Sum_probs=70.3

Q ss_pred             ceEEecCchHHHHHHH----cCC--CCCCEEEEEcCCCchHHHHHHHHcC--CCeEEEEEeCCHHHHHHH--HHHHHH--
Q 019802          221 GCVFLQGKASSMVAAA----LAP--KPGWKVLDACSAPGNKTVHLAALMK--GKGKIVACELNKERVRRL--KDTIKL--  288 (335)
Q Consensus       221 g~~~iQd~~s~l~~~~----l~~--~~g~~VLD~cagpG~kt~~la~~~~--~~g~i~a~D~~~~rl~~~--~~~~~~--  288 (335)
                      |.|+--..-+.+++.+    +..  .++.+|||.|||+|+....+++.++  +...++++|+++..++.+  +.|+..  
T Consensus       295 GqFYTP~eLA~lMVeLA~ill~~~l~~g~rVLDPaCGSG~FLIaaA~~l~ei~~~~IyGvEIDp~Al~LAK~RlNL~lN~  374 (878)
T 3s1s_A          295 GVVPTDIELGKVLSIISQHILGRPLTEDEVISDPAAGSGNLLATVSAGFNNVMPRQIWANDIETLFLELLSIRLGLLFPQ  374 (878)
T ss_dssp             BSSSCCHHHHHHHHHHHHHHHCSCCCTTCEEEETTCTTSHHHHHHHHTSTTCCGGGEEEECSCGGGHHHHHHHHHTTSTT
T ss_pred             ceEcCCHHHHHHHHHHHhhhccccCCCCCEEEECCCCccHHHHHHHHHhcccCCCeEEEEECCHHHHHHHHHHHHHHHhh
Confidence            4444444445555554    332  3688999999999999999998764  236799999999999999  555543  


Q ss_pred             --hCCCcEEEEeccCCCCCCCCCCCceEEEEEEeccccc
Q 019802          289 --SGAANIEVLHGDFLNLDPKDPAYSEVSLIFCIFTWMI  325 (335)
Q Consensus       289 --~g~~ni~~~~~D~~~~~~~~~~fd~V~~IllD~~cs~  325 (335)
                        .|+.+..+...|+......  ....+|.|+.+||.++
T Consensus       375 LlhGi~~~~I~~dD~L~~~~~--~~~kFDVVIgNPPYg~  411 (878)
T 3s1s_A          375 LVSSNNAPTITGEDVCSLNPE--DFANVSVVVMNPPYVS  411 (878)
T ss_dssp             TCBTTBCCEEECCCGGGCCGG--GGTTEEEEEECCBCCS
T ss_pred             hhcCCCcceEEecchhccccc--ccCCCCEEEECCCccc
Confidence              3444446667777664321  1223556999999965

>2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens}

Probab=97.78  E-value=1.6e-05  Score=68.66  Aligned_cols=62  Identities=10%  Similarity=0.036  Sum_probs=48.3

Q ss_pred             HHHHHcCCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCC
Q 019802          232 MVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAY  311 (335)
Q Consensus       232 l~~~~l~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~~~~~~f  311 (335)
                      ++..+....++.+|||+|||+|..+..++      .+|+++|+++.               ++.+.++|+.+++..+.+|
T Consensus        58 ~~~~l~~~~~~~~vLDiG~G~G~~~~~l~------~~v~~~D~s~~---------------~~~~~~~d~~~~~~~~~~f  116 (215)
T 2zfu_A           58 IARDLRQRPASLVVADFGCGDCRLASSIR------NPVHCFDLASL---------------DPRVTVCDMAQVPLEDESV  116 (215)
T ss_dssp             HHHHHHTSCTTSCEEEETCTTCHHHHHCC------SCEEEEESSCS---------------STTEEESCTTSCSCCTTCE
T ss_pred             HHHHHhccCCCCeEEEECCcCCHHHHHhh------ccEEEEeCCCC---------------CceEEEeccccCCCCCCCE
Confidence            33444445678899999999999987662      57999999987               4678899999987767778


Q ss_pred             ceE
Q 019802          312 SEV  314 (335)
Q Consensus       312 d~V  314 (335)
                      |.|
T Consensus       117 D~v  119 (215)
T 2zfu_A          117 DVA  119 (215)
T ss_dssp             EEE
T ss_pred             eEE
Confidence            763

>2px2_A Genome polyprotein [contains: capsid protein C (core protein); envelope protein M...; methyltransferase, SAH; HET: SAH; 2.00A {Murray valley encephalitis virus} PDB: 2px4_A* 2px5_A* 2pxa_A* 2pxc_A* 2px8_A* 2oy0_A*

Probab=97.65  E-value=6.3e-06  Score=73.38  Aligned_cols=77  Identities=14%  Similarity=0.081  Sum_probs=51.9

Q ss_pred             CCCCCEEEEEcCCCchHHHHHHHH--cCC-CeEEEEEeC--CHHHHHHHHHHHHHhCCCcEEEEec-cCCCCCCCCCCCc
Q 019802          239 PKPGWKVLDACSAPGNKTVHLAAL--MKG-KGKIVACEL--NKERVRRLKDTIKLSGAANIEVLHG-DFLNLDPKDPAYS  312 (335)
Q Consensus       239 ~~~g~~VLD~cagpG~kt~~la~~--~~~-~g~i~a~D~--~~~rl~~~~~~~~~~g~~ni~~~~~-D~~~~~~~~~~fd  312 (335)
                      .+||++|||+||||||.+-.++++  ++. .|.++++|+  .+-...       -.|+.-+.+.++ |+.+++.  ..+|
T Consensus        71 ikpg~~VVDLGaAPGGWSQvAa~~~~vg~V~G~vig~D~~~~P~~~~-------~~Gv~~i~~~~G~Df~~~~~--~~~D  141 (269)
T 2px2_A           71 VQPIGKVVDLGCGRGGWSYYAATMKNVQEVRGYTKGGPGHEEPMLMQ-------SYGWNIVTMKSGVDVFYKPS--EISD  141 (269)
T ss_dssp             CCCCEEEEEETCTTSHHHHHHTTSTTEEEEEEECCCSTTSCCCCCCC-------STTGGGEEEECSCCGGGSCC--CCCS
T ss_pred             CCCCCEEEEcCCCCCHHHHHHhhhcCCCCceeEEEccccccCCCccc-------CCCceEEEeeccCCccCCCC--CCCC
Confidence            578999999999999999999887  433 578888884  211000       023333566667 9988552  2355


Q ss_pred             eEEEEEEecccccccc
Q 019802          313 EVSLIFCIFTWMIIMF  328 (335)
Q Consensus       313 ~V~~IllD~~cs~~g~  328 (335)
                         .||+|..-+ +|.
T Consensus       142 ---vVLSDMAPn-SG~  153 (269)
T 2px2_A          142 ---TLLCDIGES-SPS  153 (269)
T ss_dssp             ---EEEECCCCC-CSC
T ss_pred             ---EEEeCCCCC-CCc
Confidence               599996555 665

>3p8z_A Mtase, non-structural protein 5; methyltransferase, RNA, ER, transferase-transferase inhibito; HET: 36A SAH; 1.70A {Dengue virus 3} SCOP: c.66.1.25 PDB: 3p97_A* 2xbm_A* 3evg_A*

Probab=97.48  E-value=0.00019  Score=63.06  Aligned_cols=79  Identities=15%  Similarity=0.172  Sum_probs=55.5

Q ss_pred             CCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEec-cCCCCCCCCCCCceEEE
Q 019802          238 APKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHG-DFLNLDPKDPAYSEVSL  316 (335)
Q Consensus       238 ~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~-D~~~~~~~~~~fd~V~~  316 (335)
                      ..++++.|||+||||||.+-.++.+. +..+|+|+|+-..--+. -..++.+|-..|++..+ |+..+++  ..+|   .
T Consensus        75 ~l~~g~~VvDLGaapGGWSq~~a~~~-g~~~V~avdvG~~ghe~-P~~~~s~gwn~v~fk~gvDv~~~~~--~~~D---t  147 (267)
T 3p8z_A           75 MVIPEGRVIDLGCGRGGWSYYCAGLK-KVTEVRGYTKGGPGHEE-PVPMSTYGWNIVKLMSGKDVFYLPP--EKCD---T  147 (267)
T ss_dssp             SSCCCEEEEEESCTTSHHHHHHHTST-TEEEEEEECCCSTTSCC-CCCCCCTTTTSEEEECSCCGGGCCC--CCCS---E
T ss_pred             CCCCCCEEEEcCCCCCcHHHHHHHhc-CCCEEEEEecCCCCccC-cchhhhcCcCceEEEeccceeecCC--cccc---E
Confidence            45789999999999999998787764 44589999995432210 00123456667999999 9877766  3366   5


Q ss_pred             EEEeccc
Q 019802          317 IFCIFTW  323 (335)
Q Consensus       317 IllD~~c  323 (335)
                      |+||..=
T Consensus       148 llcDIge  154 (267)
T 3p8z_A          148 LLCDIGE  154 (267)
T ss_dssp             EEECCCC
T ss_pred             EEEecCC
Confidence            9999443

>3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora}

Probab=97.48  E-value=0.00017  Score=67.45  Aligned_cols=76  Identities=18%  Similarity=0.113  Sum_probs=55.9

Q ss_pred             HHHHHcCCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCC-CcEEEEeccCCCCCCCCCC
Q 019802          232 MVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGA-ANIEVLHGDFLNLDPKDPA  310 (335)
Q Consensus       232 l~~~~l~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~-~ni~~~~~D~~~~~~~~~~  310 (335)
                      .+...++..++.+|||+|||+|..+..+++..+ ..+++++|++ ..+.  +++++..+. .+|+++.+|+.+..+   .
T Consensus       175 ~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~D~~-~~~~--~~~~~~~~~~~~v~~~~~d~~~~~p---~  247 (348)
T 3lst_A          175 ILARAGDFPATGTVADVGGGRGGFLLTVLREHP-GLQGVLLDRA-EVVA--RHRLDAPDVAGRWKVVEGDFLREVP---H  247 (348)
T ss_dssp             HHHHHSCCCSSEEEEEETCTTSHHHHHHHHHCT-TEEEEEEECH-HHHT--TCCCCCGGGTTSEEEEECCTTTCCC---C
T ss_pred             HHHHhCCccCCceEEEECCccCHHHHHHHHHCC-CCEEEEecCH-HHhh--cccccccCCCCCeEEEecCCCCCCC---C
Confidence            344556777899999999999999999999864 5799999994 4444  444444444 359999999973222   6


Q ss_pred             CceE
Q 019802          311 YSEV  314 (335)
Q Consensus       311 fd~V  314 (335)
                      ||.|
T Consensus       248 ~D~v  251 (348)
T 3lst_A          248 ADVH  251 (348)
T ss_dssp             CSEE
T ss_pred             CcEE
Confidence            8864

>4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A*

Probab=97.47  E-value=0.00038  Score=65.27  Aligned_cols=77  Identities=18%  Similarity=0.136  Sum_probs=61.1

Q ss_pred             HHHHcCCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCc
Q 019802          233 VAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYS  312 (335)
Q Consensus       233 ~~~~l~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~~~~~~fd  312 (335)
                      +...++..+..+|+|+|||+|..+..+++..+ +.+++..|. +..++.+++++...+.++|+++.+|+.+.+++  .+|
T Consensus       171 ~~~~~~~~~~~~v~DvGgG~G~~~~~l~~~~p-~~~~~~~dl-p~v~~~a~~~~~~~~~~rv~~~~gD~~~~~~~--~~D  246 (353)
T 4a6d_A          171 VLTAFDLSVFPLMCDLGGGAGALAKECMSLYP-GCKITVFDI-PEVVWTAKQHFSFQEEEQIDFQEGDFFKDPLP--EAD  246 (353)
T ss_dssp             HHHSSCGGGCSEEEEETCTTSHHHHHHHHHCS-SCEEEEEEC-HHHHHHHHHHSCC--CCSEEEEESCTTTSCCC--CCS
T ss_pred             HHHhcCcccCCeEEeeCCCCCHHHHHHHHhCC-CceeEeccC-HHHHHHHHHhhhhcccCceeeecCccccCCCC--Cce
Confidence            34455667788999999999999999999864 578899997 78999999988776778899999999875443  356


Q ss_pred             e
Q 019802          313 E  313 (335)
Q Consensus       313 ~  313 (335)
                      .
T Consensus       247 ~  247 (353)
T 4a6d_A          247 L  247 (353)
T ss_dssp             E
T ss_pred             E
Confidence            4

>2wk1_A NOVP; transferase, O-methyltransferase, novobiocin, TYLF superfamily; HET: SAH; 1.40A {Streptomyces caeruleus}

Probab=97.45  E-value=0.00024  Score=64.61  Aligned_cols=82  Identities=7%  Similarity=0.120  Sum_probs=63.6

Q ss_pred             CCCCEEEEEcCCCchHHHHHHHHcC----CCeEEEEEeCCH--------------------------HHHHHHHHHHHHh
Q 019802          240 KPGWKVLDACSAPGNKTVHLAALMK----GKGKIVACELNK--------------------------ERVRRLKDTIKLS  289 (335)
Q Consensus       240 ~~g~~VLD~cagpG~kt~~la~~~~----~~g~i~a~D~~~--------------------------~rl~~~~~~~~~~  289 (335)
                      .....||++|++.|+-+.+|++.+.    ++++|+++|..+                          .+++.+++|+++.
T Consensus       105 ~~pg~IlEiGv~~G~Sai~ma~~l~~~g~~~~kI~~~DtfeG~pe~~~~~~~~d~~~~~~~~~~~~~~~~~~ar~n~~~~  184 (282)
T 2wk1_A          105 NVPGDLVETGVWRGGACILMRGILRAHDVRDRTVWVADSFQGIPDVGEDGYAGDRKMALHRRNSVLAVSEEEVRRNFRNY  184 (282)
T ss_dssp             TCCCEEEEECCTTSHHHHHHHHHHHHTTCCSCCEEEEECSSCSCCCCTTSCHHHHHHCGGGGHHHHCCCHHHHHHHHHHT
T ss_pred             CCCCcEEEeecCchHHHHHHHHHhHhcCCCCCEEEEEECCCCCCcccccccccccccccccccccchhHHHHHHHHHHHc
Confidence            3455999999999999999998764    368999999642                          1578899999999


Q ss_pred             CC--CcEEEEeccCCCCCCCCCCCceEEEEEEecc
Q 019802          290 GA--ANIEVLHGDFLNLDPKDPAYSEVSLIFCIFT  322 (335)
Q Consensus       290 g~--~ni~~~~~D~~~~~~~~~~fd~V~~IllD~~  322 (335)
                      |+  ++|+++.+|+.+.-+... -..++.|++|.-
T Consensus       185 gl~~~~I~li~Gda~etL~~~~-~~~~d~vfIDaD  218 (282)
T 2wk1_A          185 DLLDEQVRFLPGWFKDTLPTAP-IDTLAVLRMDGD  218 (282)
T ss_dssp             TCCSTTEEEEESCHHHHSTTCC-CCCEEEEEECCC
T ss_pred             CCCcCceEEEEeCHHHHHhhCC-CCCEEEEEEcCC
Confidence            98  679999999977443221 124667999975

>1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A*

Probab=97.44  E-value=0.00029  Score=66.38  Aligned_cols=57  Identities=14%  Similarity=0.117  Sum_probs=48.8

Q ss_pred             CCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCC
Q 019802          239 PKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLN  303 (335)
Q Consensus       239 ~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~  303 (335)
                      ..++.+|||+|||+|..+..+++.. +..+++++|+ +.+++.+++      ..+|+++.+|+.+
T Consensus       207 ~~~~~~vLDvG~G~G~~~~~l~~~~-~~~~~~~~D~-~~~~~~a~~------~~~v~~~~~d~~~  263 (372)
T 1fp1_D          207 FEGISTLVDVGGGSGRNLELIISKY-PLIKGINFDL-PQVIENAPP------LSGIEHVGGDMFA  263 (372)
T ss_dssp             TTTCSEEEEETCTTSHHHHHHHHHC-TTCEEEEEEC-HHHHTTCCC------CTTEEEEECCTTT
T ss_pred             cCCCCEEEEeCCCCcHHHHHHHHHC-CCCeEEEeCh-HHHHHhhhh------cCCCEEEeCCccc
Confidence            5678899999999999999999986 4579999999 888877654      2579999999987

>3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP binding, binding, capsid protein; HET: GTA SAH; 1.45A {Yellow fever virus} SCOP: c.66.1.0 PDB: 3evb_A* 3evc_A* 3evd_A* 3eve_A* 3eva_A*

Probab=97.43  E-value=2.5e-05  Score=70.43  Aligned_cols=85  Identities=13%  Similarity=0.020  Sum_probs=52.9

Q ss_pred             CCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCceEEEE
Q 019802          238 APKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVSLI  317 (335)
Q Consensus       238 ~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~~~~~~fd~V~~I  317 (335)
                      ..+++.+|||+||||||.+..+++.. +...++++|+.......... .+..|. ++..+..++.........||   .|
T Consensus        71 ~l~~~~~VLDLGaAPGGWSQvAa~~~-~~~~v~g~dVGvDl~~~pi~-~~~~g~-~ii~~~~~~dv~~l~~~~~D---lV  144 (277)
T 3evf_A           71 YVKLEGRVIDLGCGRGGWCYYAAAQK-EVSGVKGFTLGRDGHEKPMN-VQSLGW-NIITFKDKTDIHRLEPVKCD---TL  144 (277)
T ss_dssp             SSCCCEEEEEETCTTCHHHHHHHTST-TEEEEEEECCCCTTCCCCCC-CCBTTG-GGEEEECSCCTTTSCCCCCS---EE
T ss_pred             CCCCCCEEEEecCCCCHHHHHHHHhc-CCCcceeEEEeccCcccccc-cCcCCC-CeEEEeccceehhcCCCCcc---EE
Confidence            35688899999999999998887763 34577888876332000000 011122 45556666544444455676   48


Q ss_pred             EEeccccccccc
Q 019802          318 FCIFTWMIIMFH  329 (335)
Q Consensus       318 llD~~cs~~g~~  329 (335)
                      ++|..-+ +|.+
T Consensus       145 lsD~apn-sG~~  155 (277)
T 3evf_A          145 LCDIGES-SSSS  155 (277)
T ss_dssp             EECCCCC-CSCH
T ss_pred             EecCccC-cCch
Confidence            8897666 7764

>4gqb_A Protein arginine N-methyltransferase 5; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} PDB: 4g56_A*

Probab=97.42  E-value=0.00058  Score=68.77  Aligned_cols=74  Identities=12%  Similarity=0.084  Sum_probs=57.7

Q ss_pred             CCEEEEEcCCCchH---HHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCc-EEEEeccCCCCCCCCCCCceEEEE
Q 019802          242 GWKVLDACSAPGNK---TVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAAN-IEVLHGDFLNLDPKDPAYSEVSLI  317 (335)
Q Consensus       242 g~~VLD~cagpG~k---t~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~n-i~~~~~D~~~~~~~~~~fd~V~~I  317 (335)
                      +..|||+|||+|-.   +...++..+...+|+|+|.++ +...+++..+..|..+ |+++++|++++..+    ++||.|
T Consensus       358 ~~vVldVGaGrGpLv~~al~A~a~~~~~vkVyAVEknp-~A~~a~~~v~~N~~~dkVtVI~gd~eev~LP----EKVDII  432 (637)
T 4gqb_A          358 VQVLMVLGAGRGPLVNASLRAAKQADRRIKLYAVEKNP-NAVVTLENWQFEEWGSQVTVVSSDMREWVAP----EKADII  432 (637)
T ss_dssp             EEEEEEESCTTSHHHHHHHHHHHHTTCEEEEEEEESCH-HHHHHHHHHHHHTTGGGEEEEESCTTTCCCS----SCEEEE
T ss_pred             CcEEEEECCCCcHHHHHHHHHHHhcCCCcEEEEEECCH-HHHHHHHHHHhccCCCeEEEEeCcceeccCC----cccCEE
Confidence            35799999999998   555566554455899999997 5667777888888855 99999999998765    357777


Q ss_pred             EEe
Q 019802          318 FCI  320 (335)
Q Consensus       318 llD  320 (335)
                      +-.
T Consensus       433 VSE  435 (637)
T 4gqb_A          433 VSE  435 (637)
T ss_dssp             ECC
T ss_pred             EEE
Confidence            765

>1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A*

Probab=97.37  E-value=0.00028  Score=65.95  Aligned_cols=65  Identities=15%  Similarity=0.176  Sum_probs=52.1

Q ss_pred             CCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCceE
Q 019802          239 PKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEV  314 (335)
Q Consensus       239 ~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~~~~~~fd~V  314 (335)
                      ..++.+|||+|||+|..+..+++..+ ..+++++|+ +.+++.+++      ..+|+++.+|+.+ +.+  .||.|
T Consensus       186 ~~~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~------~~~v~~~~~d~~~-~~p--~~D~v  250 (352)
T 1fp2_A          186 FDGLESIVDVGGGTGTTAKIICETFP-KLKCIVFDR-PQVVENLSG------SNNLTYVGGDMFT-SIP--NADAV  250 (352)
T ss_dssp             HTTCSEEEEETCTTSHHHHHHHHHCT-TCEEEEEEC-HHHHTTCCC------BTTEEEEECCTTT-CCC--CCSEE
T ss_pred             cccCceEEEeCCCccHHHHHHHHHCC-CCeEEEeeC-HHHHhhccc------CCCcEEEeccccC-CCC--CccEE
Confidence            45678999999999999999998864 579999999 999887664      2469999999976 332  38753

>2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A

Probab=97.36  E-value=0.00058  Score=62.45  Aligned_cols=59  Identities=15%  Similarity=0.057  Sum_probs=46.2

Q ss_pred             CCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccC
Q 019802          240 KPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDF  301 (335)
Q Consensus       240 ~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~  301 (335)
                      .+|+.|||.+||+|..+..++.+   +.+++++|+++..++.+++++++..-..-..+.+|+
T Consensus       234 ~~~~~vlD~f~GsGt~~~~a~~~---g~~~~g~e~~~~~~~~a~~r~~~~~~~~~~~~~~~~  292 (297)
T 2zig_A          234 FVGDVVLDPFAGTGTTLIAAARW---GRRALGVELVPRYAQLAKERFAREVPGFSLEVLDGA  292 (297)
T ss_dssp             CTTCEEEETTCTTTHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHHSTTCCEEEECC-
T ss_pred             CCCCEEEECCCCCCHHHHHHHHc---CCeEEEEeCCHHHHHHHHHHHHHhccccchhhCCcc
Confidence            68999999999999999887765   358999999999999999999886432222344444

>3g7u_A Cytosine-specific methyltransferase; DNA-binding, NAD-binding, structural GENO protein structure initiative, PSI; 1.75A {Escherichia coli O157}

Probab=97.36  E-value=0.00022  Score=67.66  Aligned_cols=76  Identities=14%  Similarity=0.033  Sum_probs=57.8

Q ss_pred             CEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCC-----CCceEEEE
Q 019802          243 WKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDP-----AYSEVSLI  317 (335)
Q Consensus       243 ~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~~~~~-----~fd~V~~I  317 (335)
                      .+|+|++||.||.+.-+...  +--.+.|+|+++..++..+.|..     +..++++|..++...+-     ....+|.|
T Consensus         3 ~~vidLFsG~GGlslG~~~a--G~~~v~avE~d~~a~~t~~~N~~-----~~~~~~~DI~~~~~~~~~~~~~~~~~~D~i   75 (376)
T 3g7u_A            3 LNVIDLFSGVGGLSLGAARA--GFDVKMAVEIDQHAINTHAINFP-----RSLHVQEDVSLLNAEIIKGFFKNDMPIDGI   75 (376)
T ss_dssp             CEEEEETCTTSHHHHHHHHH--TCEEEEEECSCHHHHHHHHHHCT-----TSEEECCCGGGCCHHHHHHHHCSCCCCCEE
T ss_pred             CeEEEEccCcCHHHHHHHHC--CCcEEEEEeCCHHHHHHHHHhCC-----CCceEecChhhcCHHHHHhhcccCCCeeEE
Confidence            47999999999999988766  23457799999999999998853     56788999988753210     01235569


Q ss_pred             EEeccccc
Q 019802          318 FCIFTWMI  325 (335)
Q Consensus       318 llD~~cs~  325 (335)
                      +.+|||-+
T Consensus        76 ~ggpPCQ~   83 (376)
T 3g7u_A           76 IGGPPCQG   83 (376)
T ss_dssp             EECCCCCT
T ss_pred             EecCCCCC
Confidence            99999964

>1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24

Probab=97.32  E-value=0.00066  Score=63.71  Aligned_cols=72  Identities=14%  Similarity=0.105  Sum_probs=58.6

Q ss_pred             HHHHHHHcCCCC------CCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCC
Q 019802          230 SSMVAAALAPKP------GWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLN  303 (335)
Q Consensus       230 s~l~~~~l~~~~------g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~  303 (335)
                      ..-++..+++.+      ++.|||+|.|+|..|..|++... ..+|+|+|+++.-+..+++.+   ...|++++++|+.+
T Consensus        41 ~~~Iv~~~~l~~~~~~~~~~~VlEIGPG~G~LT~~Ll~~~~-~~~vvavE~D~~l~~~L~~~~---~~~~l~ii~~D~l~  116 (353)
T 1i4w_A           41 YNKIFDKLDLTKTYKHPEELKVLDLYPGVGIQSAIFYNKYC-PRQYSLLEKRSSLYKFLNAKF---EGSPLQILKRDPYD  116 (353)
T ss_dssp             HHHHHHHHCGGGTCCCTTTCEEEEESCTTCHHHHHHHHHHC-CSEEEEECCCHHHHHHHHHHT---TTSSCEEECSCTTC
T ss_pred             HHHHHHhccCCcccCcCCCCEEEEECCCCCHHHHHHHhhCC-CCEEEEEecCHHHHHHHHHhc---cCCCEEEEECCccc
Confidence            455566667664      58999999999999999998643 258999999999999998877   24689999999976


Q ss_pred             CC
Q 019802          304 LD  305 (335)
Q Consensus       304 ~~  305 (335)
                      ++
T Consensus       117 ~~  118 (353)
T 1i4w_A          117 WS  118 (353)
T ss_dssp             HH
T ss_pred             hh
Confidence            64

>3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A*

Probab=97.24  E-value=0.00055  Score=64.53  Aligned_cols=57  Identities=14%  Similarity=0.172  Sum_probs=48.3

Q ss_pred             CCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCC
Q 019802          239 PKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLN  303 (335)
Q Consensus       239 ~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~  303 (335)
                      ..++.+|||+|||+|..+..+++.. +..+++++|+ +.+++.++++      .+|+++.+|+.+
T Consensus       201 ~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~d~~~  257 (368)
T 3reo_A          201 FEGLTTIVDVGGGTGAVASMIVAKY-PSINAINFDL-PHVIQDAPAF------SGVEHLGGDMFD  257 (368)
T ss_dssp             TTTCSEEEEETCTTSHHHHHHHHHC-TTCEEEEEEC-HHHHTTCCCC------TTEEEEECCTTT
T ss_pred             ccCCCEEEEeCCCcCHHHHHHHHhC-CCCEEEEEeh-HHHHHhhhhc------CCCEEEecCCCC
Confidence            5567899999999999999999986 4579999999 8888766532      579999999987

>3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A*

Probab=97.22  E-value=0.00059  Score=64.23  Aligned_cols=60  Identities=15%  Similarity=0.117  Sum_probs=49.9

Q ss_pred             HcC-CCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCC
Q 019802          236 ALA-PKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLN  303 (335)
Q Consensus       236 ~l~-~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~  303 (335)
                      .++ ..++.+|||+|||+|..+..+++..+ +.+++++|+ +.+++.+++      ..+|+++.+|+.+
T Consensus       195 ~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~------~~~v~~~~~D~~~  255 (364)
T 3p9c_A          195 LYHGFEGLGTLVDVGGGVGATVAAIAAHYP-TIKGVNFDL-PHVISEAPQ------FPGVTHVGGDMFK  255 (364)
T ss_dssp             HCCTTTTCSEEEEETCTTSHHHHHHHHHCT-TCEEEEEEC-HHHHTTCCC------CTTEEEEECCTTT
T ss_pred             hcccccCCCEEEEeCCCCCHHHHHHHHHCC-CCeEEEecC-HHHHHhhhh------cCCeEEEeCCcCC
Confidence            444 66788999999999999999999864 578999999 888776654      2579999999987

>3gcz_A Polyprotein; flavivirus, RNA capping, methyltransferase, viral enzyme STR ATP-binding, nucleotide-binding, RNA replication, structura genomics; HET: SAM; 1.70A {Yokose virus}

Probab=97.22  E-value=5.2e-05  Score=68.47  Aligned_cols=85  Identities=15%  Similarity=0.007  Sum_probs=50.7

Q ss_pred             CCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCceEEEE
Q 019802          238 APKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVSLI  317 (335)
Q Consensus       238 ~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~~~~~~fd~V~~I  317 (335)
                      ..+++.+|||+||||||.+-.+++.+ +...|+++|+.......... .+..|. ++.....++.........+|   .|
T Consensus        87 ~Lk~~~~VLDLGaAPGGWsQvAa~~~-gv~sV~GvdvG~d~~~~pi~-~~~~g~-~ii~~~~~~dv~~l~~~~~D---vV  160 (282)
T 3gcz_A           87 YVKPTGIVVDLGCGRGGWSYYAASLK-NVKKVMAFTLGVQGHEKPIM-RTTLGW-NLIRFKDKTDVFNMEVIPGD---TL  160 (282)
T ss_dssp             SCCCCEEEEEETCTTCHHHHHHHTST-TEEEEEEECCCCTTSCCCCC-CCBTTG-GGEEEECSCCGGGSCCCCCS---EE
T ss_pred             CCCCCCEEEEeCCCCCHHHHHHHHhc-CCCeeeeEEeccCccccccc-cccCCC-ceEEeeCCcchhhcCCCCcC---EE
Confidence            35688999999999999998888664 45678999997542111100 011232 33333332222222334455   59


Q ss_pred             EEeccccccccc
Q 019802          318 FCIFTWMIIMFH  329 (335)
Q Consensus       318 llD~~cs~~g~~  329 (335)
                      ++|..-+ +|.+
T Consensus       161 LSDmApn-sG~~  171 (282)
T 3gcz_A          161 LCDIGES-SPSI  171 (282)
T ss_dssp             EECCCCC-CSCH
T ss_pred             EecCccC-CCCh
Confidence            9997666 7764

>1g55_A DNA cytosine methyltransferase DNMT2; human DNA methyltransferase homologue; HET: DNA SAH; 1.80A {Homo sapiens} SCOP: c.66.1.26

Probab=97.19  E-value=0.00017  Score=67.50  Aligned_cols=77  Identities=13%  Similarity=0.131  Sum_probs=55.3

Q ss_pred             CEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCc--eEEEEEEe
Q 019802          243 WKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYS--EVSLIFCI  320 (335)
Q Consensus       243 ~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~~~~~~fd--~V~~IllD  320 (335)
                      .+|+|++||.||.+.-+...-.+-..|+++|+++..++..+.|..     +..++++|..++...+  +.  .+|.|+.+
T Consensus         3 ~~v~dLFaG~Gg~~~g~~~~G~~~~~v~~~E~d~~a~~~~~~N~~-----~~~~~~~Di~~~~~~~--~~~~~~D~l~~g   75 (343)
T 1g55_A            3 LRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYNFP-----HTQLLAKTIEGITLEE--FDRLSFDMILMS   75 (343)
T ss_dssp             EEEEEETCTTCHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCT-----TSCEECSCGGGCCHHH--HHHHCCSEEEEC
T ss_pred             CeEEEeCcCccHHHHHHHHCCCCceEEEEEeCCHHHHHHHHHhcc-----ccccccCCHHHccHhH--cCcCCcCEEEEc
Confidence            479999999999999887761112379999999999999999964     3446789998876321  11  24569999


Q ss_pred             cccccc
Q 019802          321 FTWMII  326 (335)
Q Consensus       321 ~~cs~~  326 (335)
                      |||-+-
T Consensus        76 pPCq~f   81 (343)
T 1g55_A           76 PPCQPF   81 (343)
T ss_dssp             CC----
T ss_pred             CCCcch
Confidence            999653

>2c7p_A Modification methylase HHAI; DNA methyltransferase, methyltransferase, base flipping, restriction system, transferase; HET: 5CM A1P SAH EPE CIT; 1.7A {Haemophilus haemolyticus} SCOP: c.66.1.26 PDB: 10mh_A* 1m0e_A* 1mht_A* 1hmy_A* 1skm_A* 2c7o_A* 2c7q_A* 2hmy_B* 2hr1_A* 3eeo_A* 3mht_A* 4mht_A* 5mht_A* 6mht_A* 7mht_A* 8mht_A* 9mht_A* 2zcj_A* 2z6u_A* 2z6q_A* ...

Probab=97.17  E-value=0.00054  Score=63.69  Aligned_cols=74  Identities=15%  Similarity=0.216  Sum_probs=56.7

Q ss_pred             CCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCceEEEEEEec
Q 019802          242 GWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVSLIFCIF  321 (335)
Q Consensus       242 g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~~~~~~fd~V~~IllD~  321 (335)
                      +-+|+|++||.||.+..+...  +--.++++|+++..++..+.|.....       ++|..++....  +..+|.|+.+|
T Consensus        11 ~~~~~dLFaG~Gg~~~g~~~a--G~~~v~~~e~d~~a~~t~~~N~~~~~-------~~Di~~~~~~~--~~~~D~l~~gp   79 (327)
T 2c7p_A           11 GLRFIDLFAGLGGFRLALESC--GAECVYSNEWDKYAQEVYEMNFGEKP-------EGDITQVNEKT--IPDHDILCAGF   79 (327)
T ss_dssp             TCEEEEETCTTTHHHHHHHHT--TCEEEEEECCCHHHHHHHHHHHSCCC-------BSCGGGSCGGG--SCCCSEEEEEC
T ss_pred             CCcEEEECCCcCHHHHHHHHC--CCeEEEEEeCCHHHHHHHHHHcCCCC-------cCCHHHcCHhh--CCCCCEEEECC
Confidence            568999999999999988765  34568899999999999999975321       68888776432  22345689999


Q ss_pred             ccccc
Q 019802          322 TWMII  326 (335)
Q Consensus       322 ~cs~~  326 (335)
                      ||-+-
T Consensus        80 PCQ~f   84 (327)
T 2c7p_A           80 PCQAF   84 (327)
T ss_dssp             CCTTT
T ss_pred             CCCCc
Confidence            99753

>2py6_A Methyltransferase FKBM; YP_546752.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.15A {Methylobacillus flagellatus KT} SCOP: c.66.1.56

Probab=97.13  E-value=0.0013  Score=63.02  Aligned_cols=66  Identities=14%  Similarity=0.101  Sum_probs=54.9

Q ss_pred             cCCCCCCEEEEEcCCCchHHHHHH-HHcCCCeEEEEEeCCHHHHHHHHHHHHH---hCC-CcEEEEeccCC
Q 019802          237 LAPKPGWKVLDACSAPGNKTVHLA-ALMKGKGKIVACELNKERVRRLKDTIKL---SGA-ANIEVLHGDFL  302 (335)
Q Consensus       237 l~~~~g~~VLD~cagpG~kt~~la-~~~~~~g~i~a~D~~~~rl~~~~~~~~~---~g~-~ni~~~~~D~~  302 (335)
                      +.+++++.|+|+||..|..|..++ ...++.++|+|+|.++..++.+++|++.   .+. .||++++.-+.
T Consensus       222 ~~l~~~~~viDvGAn~G~~s~~~a~~~~~~~~~V~afEP~p~~~~~L~~n~~~~~N~~~~~~v~~~~~al~  292 (409)
T 2py6_A          222 LRFSDSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINLQTLQNVLRRYTDTNFASRITVHGCGAG  292 (409)
T ss_dssp             CCCCSSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHHHHHHHHHHHHHTTTSTTGGGEEEECSEEC
T ss_pred             cccCCCCEEEECCCCcCHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHhhhccCCCCCEEEEEeEEE
Confidence            356789999999999999999988 4544458999999999999999999998   246 78888775443

>3lkz_A Non-structural protein 5; flavivirus, methyltransferase, inhibitor, P nucleotide-binding, RNA replication, viral protein; HET: SFG; 2.00A {West nile virus}

Probab=97.13  E-value=0.00053  Score=62.15  Aligned_cols=78  Identities=13%  Similarity=0.111  Sum_probs=52.9

Q ss_pred             CCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEec-cCCCCCCCCCCCceEEE
Q 019802          238 APKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHG-DFLNLDPKDPAYSEVSL  316 (335)
Q Consensus       238 ~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~-D~~~~~~~~~~fd~V~~  316 (335)
                      .+++++.|||+||||||.+-.++.+. +...|+|+|+-..--+. -..++.+|-..|.+..+ |+..+++  ..+|   .
T Consensus        91 ~l~~~~~VlDLGaapGGwsq~~~~~~-gv~~V~avdvG~~~he~-P~~~~ql~w~lV~~~~~~Dv~~l~~--~~~D---~  163 (321)
T 3lkz_A           91 FLEPVGKVIDLGCGRGGWCYYMATQK-RVQEVRGYTKGGPGHEE-PQLVQSYGWNIVTMKSGVDVFYRPS--ECCD---T  163 (321)
T ss_dssp             SCCCCEEEEEETCTTCHHHHHHTTCT-TEEEEEEECCCSTTSCC-CCCCCBTTGGGEEEECSCCTTSSCC--CCCS---E
T ss_pred             CCCCCCEEEEeCCCCCcHHHHHHhhc-CCCEEEEEEcCCCCccC-cchhhhcCCcceEEEeccCHhhCCC--CCCC---E
Confidence            45788999999999999998777663 34589999996541100 00001233334888887 8888876  2355   5


Q ss_pred             EEEecc
Q 019802          317 IFCIFT  322 (335)
Q Consensus       317 IllD~~  322 (335)
                      |+||..
T Consensus       164 ivcDig  169 (321)
T 3lkz_A          164 LLCDIG  169 (321)
T ss_dssp             EEECCC
T ss_pred             EEEECc
Confidence            999988

>2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A

Probab=97.00  E-value=0.00017  Score=60.13  Aligned_cols=57  Identities=16%  Similarity=0.084  Sum_probs=46.5

Q ss_pred             cCCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCC---CCCCCce
Q 019802          237 LAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDP---KDPAYSE  313 (335)
Q Consensus       237 l~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~~---~~~~fd~  313 (335)
                      ++.++|++|||+|||.                 +.+|+|+.|++.++++...    ++++.++|+.++++   .+++||.
T Consensus         8 ~g~~~g~~vL~~~~g~-----------------v~vD~s~~ml~~a~~~~~~----~~~~~~~d~~~~~~~~~~~~~fD~   66 (176)
T 2ld4_A            8 FGISAGQFVAVVWDKS-----------------SPVEALKGLVDKLQALTGN----EGRVSVENIKQLLQSAHKESSFDI   66 (176)
T ss_dssp             TTCCTTSEEEEEECTT-----------------SCHHHHHHHHHHHHHHTTT----TSEEEEEEGGGGGGGCCCSSCEEE
T ss_pred             cCCCCCCEEEEecCCc-----------------eeeeCCHHHHHHHHHhccc----CcEEEEechhcCccccCCCCCEeE
Confidence            4578999999999985                 2399999999999988642    48899999999876   6677886


Q ss_pred             E
Q 019802          314 V  314 (335)
Q Consensus       314 V  314 (335)
                      |
T Consensus        67 V   67 (176)
T 2ld4_A           67 I   67 (176)
T ss_dssp             E
T ss_pred             E
Confidence            4

>2qy6_A UPF0209 protein YFCK; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Escherichia coli}

Probab=97.00  E-value=0.00073  Score=60.65  Aligned_cols=83  Identities=14%  Similarity=0.123  Sum_probs=57.2

Q ss_pred             CCCCCEEEEEcCCCchHHHHHHHHc------CC-----CeEEEEEeCCH---HHHH-----------HHHHHHHH-----
Q 019802          239 PKPGWKVLDACSAPGNKTVHLAALM------KG-----KGKIVACELNK---ERVR-----------RLKDTIKL-----  288 (335)
Q Consensus       239 ~~~g~~VLD~cagpG~kt~~la~~~------~~-----~g~i~a~D~~~---~rl~-----------~~~~~~~~-----  288 (335)
                      .+++.+|||+|+|+|..+..+++..      .+     ...++++|.++   +++.           .++++++.     
T Consensus        58 ~~~~~~ILEiGfGtG~n~l~~~~~~~~~~~~~p~~~~~~l~~isiE~~p~~~~~l~~a~~~~p~l~~~a~~l~~~w~~~~  137 (257)
T 2qy6_A           58 PHPLFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPL  137 (257)
T ss_dssp             SSSEEEEEESCCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCSC
T ss_pred             CCCCCEEEEECCChHHHHHHHHHHHHhhhhhCCCCCcceeEEEEEECCcCCHHHHHHHHhcChhHHHHHHHHHHhccccc
Confidence            3456799999999999999887764      44     36899999876   5555           44555554     


Q ss_pred             -------h--CCCcEEEEeccCCCCCCCCCC--CceEEEEEEec
Q 019802          289 -------S--GAANIEVLHGDFLNLDPKDPA--YSEVSLIFCIF  321 (335)
Q Consensus       289 -------~--g~~ni~~~~~D~~~~~~~~~~--fd~V~~IllD~  321 (335)
                             +  |..+++++.+|+.+.-+....  -+.+|.|++|+
T Consensus       138 ~g~~r~~~~~~~~~l~l~~GDa~~~l~~~~~~~~~~~D~iflD~  181 (257)
T 2qy6_A          138 PGCHRLLLDEGRVTLDLWFGDINELISQLDDSLNQKVDAWFLDG  181 (257)
T ss_dssp             SEEEEEEEC--CEEEEEEESCHHHHGGGSCGGGTTCEEEEEECS
T ss_pred             cchhheeccCCceEEEEEECcHHHHHhhcccccCCeEEEEEECC
Confidence                   1  224688999999884322111  12577899996

>1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A*

Probab=96.98  E-value=0.0011  Score=61.97  Aligned_cols=65  Identities=15%  Similarity=0.170  Sum_probs=51.7

Q ss_pred             CCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCceE
Q 019802          239 PKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEV  314 (335)
Q Consensus       239 ~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~~~~~~fd~V  314 (335)
                      ..++.+|||+|||+|..+..+++..+ +.+++++|+ +.+++.+++      ..+|+++.+|+.+ +.+  .||.|
T Consensus       191 ~~~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~------~~~v~~~~~d~~~-~~~--~~D~v  255 (358)
T 1zg3_A          191 FEGLESLVDVGGGTGGVTKLIHEIFP-HLKCTVFDQ-PQVVGNLTG------NENLNFVGGDMFK-SIP--SADAV  255 (358)
T ss_dssp             HHTCSEEEEETCTTSHHHHHHHHHCT-TSEEEEEEC-HHHHSSCCC------CSSEEEEECCTTT-CCC--CCSEE
T ss_pred             ccCCCEEEEECCCcCHHHHHHHHHCC-CCeEEEecc-HHHHhhccc------CCCcEEEeCccCC-CCC--CceEE
Confidence            34678999999999999999999864 578999999 788876554      3569999999987 433  38753

>3eld_A Methyltransferase; flavivirus, RNA capping, guanylyltransfer viral enzyme structure; HET: SFG; 1.90A {Wesselsbron virus} PDB: 3elu_A* 3elw_A* 3ely_A* 3emb_A* 3emd_A*

Probab=96.86  E-value=0.0017  Score=59.01  Aligned_cols=82  Identities=15%  Similarity=0.074  Sum_probs=49.2

Q ss_pred             CCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEec--cCCCCCCCCCCCceEEE
Q 019802          239 PKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHG--DFLNLDPKDPAYSEVSL  316 (335)
Q Consensus       239 ~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~--D~~~~~~~~~~fd~V~~  316 (335)
                      .++|.+|||+||||||.+-.+++.+ +...|+++|+.......... .+.++. ++.....  |+..+  ....+|   .
T Consensus        79 ~~~g~~vlDLGaaPGgWsqva~~~~-gv~sV~Gvdlg~~~~~~P~~-~~~~~~-~iv~~~~~~di~~l--~~~~~D---l  150 (300)
T 3eld_A           79 LRITGRVLDLGCGRGGWSYYAAAQK-EVMSVKGYTLGIEGHEKPIH-MQTLGW-NIVKFKDKSNVFTM--PTEPSD---T  150 (300)
T ss_dssp             CCCCEEEEEETCTTCHHHHHHHTST-TEEEEEEECCCCTTSCCCCC-CCBTTG-GGEEEECSCCTTTS--CCCCCS---E
T ss_pred             CCCCCEEEEcCCCCCHHHHHHHHhc-CCceeeeEEecccccccccc-ccccCC-ceEEeecCceeeec--CCCCcC---E
Confidence            3579999999999999999998764 34578899996432100000 000122 2222332  33333  233455   5


Q ss_pred             EEEeccccccccc
Q 019802          317 IFCIFTWMIIMFH  329 (335)
Q Consensus       317 IllD~~cs~~g~~  329 (335)
                      |++|...+ +|.+
T Consensus       151 VlsD~APn-sG~~  162 (300)
T 3eld_A          151 LLCDIGES-SSNP  162 (300)
T ss_dssp             EEECCCCC-CSSH
T ss_pred             EeecCcCC-CCCH
Confidence            89998888 8865

>2k4m_A TR8_protein, UPF0146 protein MTH_1000; alpha+beta, rossman fold, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str}

Probab=96.71  E-value=0.001  Score=54.19  Aligned_cols=50  Identities=12%  Similarity=0.126  Sum_probs=40.5

Q ss_pred             CCCCEEEEEcCCCc-hHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCC
Q 019802          240 KPGWKVLDACSAPG-NKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDP  306 (335)
Q Consensus       240 ~~g~~VLD~cagpG-~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~~  306 (335)
                      .++++|||+|||+| ..+..|++..  ...|+|+|+++..++               +++.|..+...
T Consensus        34 ~~~~rVlEVG~G~g~~vA~~La~~~--g~~V~atDInp~Av~---------------~v~dDiF~P~~   84 (153)
T 2k4m_A           34 GPGTRVVEVGAGRFLYVSDYIRKHS--KVDLVLTDIKPSHGG---------------IVRDDITSPRM   84 (153)
T ss_dssp             CSSSEEEEETCTTCCHHHHHHHHHS--CCEEEEECSSCSSTT---------------EECCCSSSCCH
T ss_pred             CCCCcEEEEccCCChHHHHHHHHhC--CCeEEEEECCccccc---------------eEEccCCCCcc
Confidence            45789999999999 5888998752  367999999988665               78888877544

>2oo3_A Protein involved in catabolism of external DNA; structural genomics, unknown function, PSI-2, protein structure initiative; 2.00A {Legionella pneumophila subsp} SCOP: c.66.1.59

Probab=96.69  E-value=0.00024  Score=64.43  Aligned_cols=76  Identities=17%  Similarity=0.177  Sum_probs=60.8

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCC-CC---CCCCCCceEEE
Q 019802          241 PGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLN-LD---PKDPAYSEVSL  316 (335)
Q Consensus       241 ~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~-~~---~~~~~fd~V~~  316 (335)
                      .+..+||+.+|+|..+..+..   +..+++.+|.++..++.+++|++.  ..++++++.|+.. +.   ++...||   .
T Consensus        91 n~~~~LDlfaGSGaLgiEaLS---~~d~~vfvE~~~~a~~~L~~Nl~~--~~~~~V~~~D~~~~L~~l~~~~~~fd---L  162 (283)
T 2oo3_A           91 NLNSTLSYYPGSPYFAINQLR---SQDRLYLCELHPTEYNFLLKLPHF--NKKVYVNHTDGVSKLNALLPPPEKRG---L  162 (283)
T ss_dssp             SSSSSCCEEECHHHHHHHHSC---TTSEEEEECCSHHHHHHHTTSCCT--TSCEEEECSCHHHHHHHHCSCTTSCE---E
T ss_pred             cCCCceeEeCCcHHHHHHHcC---CCCeEEEEeCCHHHHHHHHHHhCc--CCcEEEEeCcHHHHHHHhcCCCCCcc---E
Confidence            456799999999999997765   347999999999999999999985  3579999999744 22   3334576   4


Q ss_pred             EEEecccc
Q 019802          317 IFCIFTWM  324 (335)
Q Consensus       317 IllD~~cs  324 (335)
                      ||+|||.-
T Consensus       163 VfiDPPYe  170 (283)
T 2oo3_A          163 IFIDPSYE  170 (283)
T ss_dssp             EEECCCCC
T ss_pred             EEECCCCC
Confidence            99999975

>1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11

Probab=96.63  E-value=0.0025  Score=57.01  Aligned_cols=50  Identities=20%  Similarity=0.323  Sum_probs=41.3

Q ss_pred             CCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCC
Q 019802          239 PKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGA  291 (335)
Q Consensus       239 ~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~  291 (335)
                      ..+|+.|||.+||+|..+.....+   +.+++++|+++..++.+++|++..++
T Consensus       210 ~~~~~~vlD~f~GsGtt~~~a~~~---gr~~ig~e~~~~~~~~~~~r~~~~~~  259 (260)
T 1g60_A          210 SNPNDLVLDCFMGSGTTAIVAKKL---GRNFIGCDMNAEYVNQANFVLNQLEI  259 (260)
T ss_dssp             CCTTCEEEESSCTTCHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHC---
T ss_pred             CCCCCEEEECCCCCCHHHHHHHHc---CCeEEEEeCCHHHHHHHHHHHHhccC
Confidence            368999999999999998776654   35899999999999999999987654

>3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold, beta-barrel, symmetric arginine dimethylase, SAM binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB: 3ua4_A

Probab=96.38  E-value=0.0031  Score=63.82  Aligned_cols=79  Identities=14%  Similarity=0.103  Sum_probs=53.8

Q ss_pred             CCEEEEEcCCCchHHHHH---HHHcC---------CCeEEEEEeCCHHHHHHHHHHHHHhCCCc-EEEEeccCCCCCCC-
Q 019802          242 GWKVLDACSAPGNKTVHL---AALMK---------GKGKIVACELNKERVRRLKDTIKLSGAAN-IEVLHGDFLNLDPK-  307 (335)
Q Consensus       242 g~~VLD~cagpG~kt~~l---a~~~~---------~~g~i~a~D~~~~rl~~~~~~~~~~g~~n-i~~~~~D~~~~~~~-  307 (335)
                      +..|||+|||+|-.+...   ++..+         ...+|+|+|.++.....++.... .|..+ |+++++|++++..+ 
T Consensus       410 ~~VVldVGaGtGpLs~~al~A~~~a~~~~~~~~~~~~~kVyAVEknp~A~~~l~~~~~-Ng~~d~VtVI~gd~eev~lp~  488 (745)
T 3ua3_A          410 TVVIYLLGGGRGPIGTKILKSEREYNNTFRQGQESLKVKLYIVEKNPNAIVTLKYMNV-RTWKRRVTIIESDMRSLPGIA  488 (745)
T ss_dssp             EEEEEEESCTTCHHHHHHHHHHHHHHHHHSTTSCCCEEEEEEEECCHHHHHHHHHHHH-HTTTTCSEEEESCGGGHHHHH
T ss_pred             CcEEEEECCCCCHHHHHHHHHHHHhCccccccccccccEEEEEeCChHHHHHHHHHHh-cCCCCeEEEEeCchhhccccc
Confidence            347999999999997533   22122         24599999999987766666554 57655 99999999998652 


Q ss_pred             -CCCCceEEEEEEec
Q 019802          308 -DPAYSEVSLIFCIF  321 (335)
Q Consensus       308 -~~~fd~V~~IllD~  321 (335)
                       .....+||.|+-..
T Consensus       489 ~~~~~ekVDIIVSEl  503 (745)
T 3ua3_A          489 KDRGFEQPDIIVSEL  503 (745)
T ss_dssp             HHTTCCCCSEEEECC
T ss_pred             ccCCCCcccEEEEec
Confidence             11123455566553

>2qrv_A DNA (cytosine-5)-methyltransferase 3A; DNA methyltransferase 3A (DNMT3A) and ITS regulatory factor; HET: DNA SAH; 2.89A {Homo sapiens}

Probab=96.31  E-value=0.004  Score=56.93  Aligned_cols=81  Identities=12%  Similarity=0.075  Sum_probs=58.5

Q ss_pred             CCCCEEEEEcCCCchHHHHHHHHcCCCeE-EEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCC-CCCceEEEE
Q 019802          240 KPGWKVLDACSAPGNKTVHLAALMKGKGK-IVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKD-PAYSEVSLI  317 (335)
Q Consensus       240 ~~g~~VLD~cagpG~kt~~la~~~~~~g~-i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~~~~-~~fd~V~~I  317 (335)
                      ..+-+|+|++||.||.+.-+... +-... |+++|+++..++..+.|..     +..+..+|..++...+ ..+..+|.+
T Consensus        14 ~~~~~vidLFaG~GG~~~g~~~a-G~~~~~v~a~E~d~~a~~ty~~N~~-----~~~~~~~DI~~i~~~~i~~~~~~Dll   87 (295)
T 2qrv_A           14 RKPIRVLSLFDGIATGLLVLKDL-GIQVDRYIASEVCEDSITVGMVRHQ-----GKIMYVGDVRSVTQKHIQEWGPFDLV   87 (295)
T ss_dssp             CCCEEEEEETCTTTHHHHHHHHT-TBCEEEEEEECCCHHHHHHHHHHTT-----TCEEEECCGGGCCHHHHHHTCCCSEE
T ss_pred             CCCCEEEEeCcCccHHHHHHHHC-CCccceEEEEECCHHHHHHHHHhCC-----CCceeCCChHHccHHHhcccCCcCEE
Confidence            34568999999999999877654 22222 6999999999999888853     3467889998876431 111234568


Q ss_pred             EEecccccc
Q 019802          318 FCIFTWMII  326 (335)
Q Consensus       318 llD~~cs~~  326 (335)
                      +..|||-+-
T Consensus        88 ~ggpPCQ~f   96 (295)
T 2qrv_A           88 IGGSPCNDL   96 (295)
T ss_dssp             EECCCCGGG
T ss_pred             EecCCCccc
Confidence            889999753

>3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli}

Probab=96.12  E-value=0.03  Score=51.03  Aligned_cols=79  Identities=15%  Similarity=0.123  Sum_probs=62.2

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHh--C---CCcEEEEeccCCCCCC-CCCCCceE
Q 019802          241 PGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLS--G---AANIEVLHGDFLNLDP-KDPAYSEV  314 (335)
Q Consensus       241 ~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~--g---~~ni~~~~~D~~~~~~-~~~~fd~V  314 (335)
                      ...+||=+|.|-|+....++.. .+..+|+.+|+++.-++.+++-+...  |   -++++++.+|+..+-. ..++|   
T Consensus        83 ~pk~VLIiGgGdG~~~revlk~-~~v~~v~~VEID~~Vv~~a~~~lp~~~~~~~~dpRv~v~~~Dg~~~l~~~~~~y---  158 (294)
T 3o4f_A           83 HAKHVLIIGGGDGAMLREVTRH-KNVESITMVEIDAGVVSFCRQYLPNHNAGSYDDPRFKLVIDDGVNFVNQTSQTF---  158 (294)
T ss_dssp             CCCEEEEESCTTSHHHHHHHTC-TTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCTTTTTSCSSCCE---
T ss_pred             CCCeEEEECCCchHHHHHHHHc-CCcceEEEEcCCHHHHHHHHhcCccccccccCCCcEEEEechHHHHHhhccccC---
Confidence            4568999999999999988865 34468999999999999999987653  2   2569999999988653 23444   


Q ss_pred             EEEEEeccc
Q 019802          315 SLIFCIFTW  323 (335)
Q Consensus       315 ~~IllD~~c  323 (335)
                      |+|++|.+.
T Consensus       159 DvIi~D~~d  167 (294)
T 3o4f_A          159 DVIISDCTD  167 (294)
T ss_dssp             EEEEESCCC
T ss_pred             CEEEEeCCC
Confidence            569999654

>3ubt_Y Modification methylase HAEIII; protein-DNA complex, DNA cytosine-5 methyltransferase, DNA B S-adenosyl methionine binding; HET: ATP 2PE; 2.50A {Haemophilus aegyptius} PDB: 1dct_A*

Probab=96.04  E-value=0.0064  Score=56.02  Aligned_cols=73  Identities=14%  Similarity=0.175  Sum_probs=56.4

Q ss_pred             CEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCceEEEEEEecc
Q 019802          243 WKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVSLIFCIFT  322 (335)
Q Consensus       243 ~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~~~~~~fd~V~~IllD~~  322 (335)
                      .+|||++||.||.+.-+-+.  +--.|.|+|+++..++..+.|..      -.++++|..++...+  +..+|.++-=||
T Consensus         1 mkvidLFsG~GG~~~G~~~a--G~~~v~a~e~d~~a~~ty~~N~~------~~~~~~DI~~i~~~~--~~~~D~l~ggpP   70 (331)
T 3ubt_Y            1 MNLISLFSGAGGLDLGFQKA--GFRIICANEYDKSIWKTYESNHS------AKLIKGDISKISSDE--FPKCDGIIGGPP   70 (331)
T ss_dssp             CEEEEESCTTCHHHHHHHHT--TCEEEEEEECCTTTHHHHHHHCC------SEEEESCGGGCCGGG--SCCCSEEECCCC
T ss_pred             CeEEEeCcCccHHHHHHHHC--CCEEEEEEeCCHHHHHHHHHHCC------CCcccCChhhCCHhh--CCcccEEEecCC
Confidence            37999999999999877543  23457799999999999998842      257889999887532  445667888999


Q ss_pred             ccc
Q 019802          323 WMI  325 (335)
Q Consensus       323 cs~  325 (335)
                      |-+
T Consensus        71 CQ~   73 (331)
T 3ubt_Y           71 SQS   73 (331)
T ss_dssp             GGG
T ss_pred             CCC
Confidence            975

>4h0n_A DNMT2; SAH binding, transferase; HET: SAH; 2.71A {Spodoptera frugiperda}

Probab=95.96  E-value=0.0031  Score=58.72  Aligned_cols=77  Identities=16%  Similarity=0.116  Sum_probs=55.6

Q ss_pred             CEEEEEcCCCchHHHHHHHHcCCC-eEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCceEEEEEEec
Q 019802          243 WKVLDACSAPGNKTVHLAALMKGK-GKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVSLIFCIF  321 (335)
Q Consensus       243 ~~VLD~cagpG~kt~~la~~~~~~-g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~~~~~~fd~V~~IllD~  321 (335)
                      -+|+|++||.||.+.-+... +-. -.|.|+|+++...+..+.|..     +..++++|..++...+-.-..+|.++.-|
T Consensus         4 ~~~idLFaG~GG~~~G~~~a-G~~~~~v~a~e~d~~a~~ty~~N~~-----~~~~~~~DI~~~~~~~~~~~~~D~l~ggp   77 (333)
T 4h0n_A            4 HKILELYSGIGGMHCAWKES-GLDGEIVAAVDINTVANSVYKHNFP-----ETNLLNRNIQQLTPQVIKKWNVDTILMSP   77 (333)
T ss_dssp             EEEEEETCTTTHHHHHHHHH-TCSEEEEEEECCCHHHHHHHHHHCT-----TSCEECCCGGGCCHHHHHHTTCCEEEECC
T ss_pred             CEEEEECcCccHHHHHHHHc-CCCceEEEEEeCCHHHHHHHHHhCC-----CCceeccccccCCHHHhccCCCCEEEecC
Confidence            37999999999999888765 211 357899999999999998864     23467888888764220000245688899


Q ss_pred             cccc
Q 019802          322 TWMI  325 (335)
Q Consensus       322 ~cs~  325 (335)
                      ||-+
T Consensus        78 PCQ~   81 (333)
T 4h0n_A           78 PCQP   81 (333)
T ss_dssp             CCCC
T ss_pred             CCcc
Confidence            9964

>3r24_A NSP16, 2'-O-methyl transferase; methyltransferase, zinc-finger, transferase, viral protein; HET: SAM; 2.00A {Sars coronavirus}

Probab=95.88  E-value=0.014  Score=53.00  Aligned_cols=73  Identities=22%  Similarity=0.177  Sum_probs=50.6

Q ss_pred             cCCCCCCEEEEEcC------CCchHHHHHHHHcCCC-eEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCC
Q 019802          237 LAPKPGWKVLDACS------APGNKTVHLAALMKGK-GKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDP  309 (335)
Q Consensus       237 l~~~~g~~VLD~ca------gpG~kt~~la~~~~~~-g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~~~~~  309 (335)
                      +.+..|++|||+||      +||+  ..+.+. .+. +.|+++|+.+--.           ..+ .++++|+..+...  
T Consensus       105 ~~vp~gmrVLDLGA~s~kg~APGS--~VLr~~-~p~g~~VVavDL~~~~s-----------da~-~~IqGD~~~~~~~--  167 (344)
T 3r24_A          105 LAVPYNMRVIHFGAGSDKGVAPGT--AVLRQW-LPTGTLLVDSDLNDFVS-----------DAD-STLIGDCATVHTA--  167 (344)
T ss_dssp             CCCCTTCEEEEESCCCTTSBCHHH--HHHHHH-SCTTCEEEEEESSCCBC-----------SSS-EEEESCGGGEEES--
T ss_pred             EeecCCCEEEeCCCCCCCCCCCcH--HHHHHh-CCCCcEEEEeeCccccc-----------CCC-eEEEccccccccC--
Confidence            34567999999997      9999  344444 555 6999999975311           123 3599998765542  


Q ss_pred             CCceEEEEEEecccccccc
Q 019802          310 AYSEVSLIFCIFTWMIIMF  328 (335)
Q Consensus       310 ~fd~V~~IllD~~cs~~g~  328 (335)
                        ..+|.|+-|....-+|.
T Consensus       168 --~k~DLVISDMAPNtTG~  184 (344)
T 3r24_A          168 --NKWDLIISDMYDPRTKH  184 (344)
T ss_dssp             --SCEEEEEECCCCTTSCS
T ss_pred             --CCCCEEEecCCCCcCCc
Confidence              34667999977776665

>3qv2_A 5-cytosine DNA methyltransferase; DNMT2, ehmeth; HET: SAH; 2.15A {Entamoeba histolytica}

Probab=95.80  E-value=0.004  Score=57.81  Aligned_cols=76  Identities=11%  Similarity=0.035  Sum_probs=55.7

Q ss_pred             CCEEEEEcCCCchHHHHHHHHcC-CCeEE-EEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCc--eEEEE
Q 019802          242 GWKVLDACSAPGNKTVHLAALMK-GKGKI-VACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYS--EVSLI  317 (335)
Q Consensus       242 g~~VLD~cagpG~kt~~la~~~~-~~g~i-~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~~~~~~fd--~V~~I  317 (335)
                      .-+|+|++||.||.+.-+... + +--.+ .|+|+++..++..+.|...     . ++++|..++...+  +.  .+|.+
T Consensus        10 ~~~vidLFaG~GG~~~G~~~a-G~~~~~v~~a~e~d~~a~~ty~~N~~~-----~-~~~~DI~~~~~~~--i~~~~~Dil   80 (327)
T 3qv2_A           10 QVNVIEFFSGIGGLRSSYERS-SININATFIPFDINEIANKIYSKNFKE-----E-VQVKNLDSISIKQ--IESLNCNTW   80 (327)
T ss_dssp             CEEEEEETCTTTHHHHHHHHS-SCCCCEEEEEECCCHHHHHHHHHHHCC-----C-CBCCCTTTCCHHH--HHHTCCCEE
T ss_pred             CCEEEEECCChhHHHHHHHHc-CCCceEEEEEEECCHHHHHHHHHHCCC-----C-cccCChhhcCHHH--hccCCCCEE
Confidence            348999999999999887654 2 11246 7999999999999999742     1 5678888876422  11  34568


Q ss_pred             EEecccccc
Q 019802          318 FCIFTWMII  326 (335)
Q Consensus       318 llD~~cs~~  326 (335)
                      +.-|||-+-
T Consensus        81 ~ggpPCQ~f   89 (327)
T 3qv2_A           81 FMSPPCQPY   89 (327)
T ss_dssp             EECCCCTTC
T ss_pred             EecCCccCc
Confidence            889999764

>3me5_A Cytosine-specific methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 1.75A {Shigella flexneri 2A} PDB: 3lx6_A

Probab=94.74  E-value=0.015  Score=56.68  Aligned_cols=80  Identities=15%  Similarity=0.218  Sum_probs=55.7

Q ss_pred             CCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCC-------------
Q 019802          242 GWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKD-------------  308 (335)
Q Consensus       242 g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~~~~-------------  308 (335)
                      .-+|+|+|||.||.+.-+-..  +--.|+|+|+++..++..+.|...  ..+..++++|..++....             
T Consensus        88 ~~~viDLFaG~GGlslG~~~a--G~~~v~avE~d~~A~~ty~~N~~~--~p~~~~~~~DI~~i~~~~~~~~~~~~~~~~i  163 (482)
T 3me5_A           88 AFRFIDLFAGIGGIRRGFESI--GGQCVFTSEWNKHAVRTYKANHYC--DPATHHFNEDIRDITLSHQEGVSDEAAAEHI  163 (482)
T ss_dssp             SEEEEEESCTTSHHHHHHHTT--TEEEEEEECCCHHHHHHHHHHSCC--CTTTCEEESCTHHHHCTTCTTSCHHHHHHHH
T ss_pred             cceEEEecCCccHHHHHHHHC--CCEEEEEEeCCHHHHHHHHHhccc--CCCcceeccchhhhhhccccccchhhHHhhh
Confidence            458999999999999877643  223588999999999999988621  123346778887765321             


Q ss_pred             -CCCceEEEEEEeccccc
Q 019802          309 -PAYSEVSLIFCIFTWMI  325 (335)
Q Consensus       309 -~~fd~V~~IllD~~cs~  325 (335)
                       ..+..+|.|+.-|||-+
T Consensus       164 ~~~~~~~Dvl~gGpPCQ~  181 (482)
T 3me5_A          164 RQHIPEHDVLLAGFPCQP  181 (482)
T ss_dssp             HHHSCCCSEEEEECCCCC
T ss_pred             hhcCCCCCEEEecCCCcc
Confidence             01223456888999974

>3c6k_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC, phosphoprotein; HET: SPD MTA; 1.95A {Homo sapiens} PDB: 3c6m_A*

Probab=93.51  E-value=0.045  Score=51.55  Aligned_cols=79  Identities=15%  Similarity=0.156  Sum_probs=58.9

Q ss_pred             CCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhC---C-----CcEEEEeccCCCCCC----C
Q 019802          240 KPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSG---A-----ANIEVLHGDFLNLDP----K  307 (335)
Q Consensus       240 ~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g---~-----~ni~~~~~D~~~~~~----~  307 (335)
                      .+..+||=+|.|-|+....+... + ..+|+.+|+++.-++.+++-+....   .     ++++++.+|+..+-.    .
T Consensus       204 ~~pkrVLIIGgGdG~~~revlkh-~-~~~V~~VEIDp~VVe~ar~yfp~~~~~~~d~pr~~rv~vii~Da~~fl~~~~~~  281 (381)
T 3c6k_A          204 YTGKDVLILGGGDGGILCEIVKL-K-PKMVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIEDCIPVLKRYAKE  281 (381)
T ss_dssp             CTTCEEEEEECTTCHHHHHHHTT-C-CSEEEEEESCHHHHHHHHHHCCC----CCSSSEETTEEEEESCHHHHHHHHHHH
T ss_pred             CCCCeEEEECCCcHHHHHHHHhc-C-CceeEEEccCHHHHHHHHhhchhhhhhhhccccccceeeehHHHHHHHHhhhhc
Confidence            35679999999999999988765 3 3689999999999999998753211   1     248999999976432    2


Q ss_pred             CCCCceEEEEEEeccc
Q 019802          308 DPAYSEVSLIFCIFTW  323 (335)
Q Consensus       308 ~~~fd~V~~IllD~~c  323 (335)
                      ...||   +|++|.+-
T Consensus       282 ~~~yD---vIIvDl~D  294 (381)
T 3c6k_A          282 GREFD---YVINDLTA  294 (381)
T ss_dssp             TCCEE---EEEEECCS
T ss_pred             cCcee---EEEECCCC
Confidence            34465   59999653

>1eg2_A Modification methylase RSRI; rossmann fold, exocyclic amino DNA methyltransferase RSRI, D binding, DNA modification, DNA methylation; HET: MTA; 1.75A {Rhodobacter sphaeroides} SCOP: c.66.1.11 PDB: 1nw5_A* 1nw6_A* 1nw7_A* 1nw8_A

Probab=93.51  E-value=0.079  Score=48.77  Aligned_cols=49  Identities=16%  Similarity=0.179  Sum_probs=39.1

Q ss_pred             CCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCH---HHHHHHHHHHHHhC
Q 019802          239 PKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNK---ERVRRLKDTIKLSG  290 (335)
Q Consensus       239 ~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~---~rl~~~~~~~~~~g  290 (335)
                      ..+|+.|||.+||.|..+.....+   +.+.+++|+++   .-++.+++++++.|
T Consensus       240 ~~~~~~vlDpF~GsGtt~~aa~~~---~r~~ig~e~~~~~~~~~~~~~~Rl~~~~  291 (319)
T 1eg2_A          240 SHPGSTVLDFFAGSGVTARVAIQE---GRNSICTDAAPVFKEYYQKQLTFLQDDG  291 (319)
T ss_dssp             SCTTCEEEETTCTTCHHHHHHHHH---TCEEEEEESSTHHHHHHHHHHHHC----
T ss_pred             CCCCCEEEecCCCCCHHHHHHHHc---CCcEEEEECCccHHHHHHHHHHHHHHcc
Confidence            468999999999999887766655   35899999999   99999999998876

>1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11

Probab=93.20  E-value=0.068  Score=49.22  Aligned_cols=63  Identities=13%  Similarity=0.048  Sum_probs=49.0

Q ss_pred             CCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCC
Q 019802          239 PKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLD  305 (335)
Q Consensus       239 ~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~  305 (335)
                      ..+|+.|||..||.|..+.... .++  .+.+++|+++..++.+++++++.+.. ...++.|+.++.
T Consensus       250 ~~~~~~VlDpF~GsGtt~~aa~-~~g--r~~ig~e~~~~~~~~~~~r~~~~~~~-~~~~~~~~~~i~  312 (323)
T 1boo_A          250 TEPDDLVVDIFGGSNTTGLVAE-RES--RKWISFEMKPEYVAASAFRFLDNNIS-EEKITDIYNRIL  312 (323)
T ss_dssp             CCTTCEEEETTCTTCHHHHHHH-HTT--CEEEEEESCHHHHHHHHGGGSCSCSC-HHHHHHHHHHHH
T ss_pred             CCCCCEEEECCCCCCHHHHHHH-HcC--CCEEEEeCCHHHHHHHHHHHHhcccc-hHHHHHHHHHHH
Confidence            4689999999999998765544 443  58999999999999999999887763 445566665554

>3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori}

Probab=91.47  E-value=0.55  Score=43.19  Aligned_cols=53  Identities=19%  Similarity=0.110  Sum_probs=41.0

Q ss_pred             HcCCCCCCEEEEEcCCC-chHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcE
Q 019802          236 ALAPKPGWKVLDACSAP-GNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANI  294 (335)
Q Consensus       236 ~l~~~~g~~VLD~cagp-G~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni  294 (335)
                      ...+++|++||-.|||+ |..+.+++..++  .+|+++|.++++++.++    .+|.+.+
T Consensus       171 ~~~~~~g~~VlV~GaG~vG~~a~qla~~~G--a~Vi~~~~~~~~~~~~~----~lGa~~v  224 (348)
T 3two_A          171 FSKVTKGTKVGVAGFGGLGSMAVKYAVAMG--AEVSVFARNEHKKQDAL----SMGVKHF  224 (348)
T ss_dssp             HTTCCTTCEEEEESCSHHHHHHHHHHHHTT--CEEEEECSSSTTHHHHH----HTTCSEE
T ss_pred             hcCCCCCCEEEEECCcHHHHHHHHHHHHCC--CeEEEEeCCHHHHHHHH----hcCCCee
Confidence            34788999999999876 666667777754  48999999999998765    4787644

>2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida}

Probab=91.21  E-value=0.39  Score=45.15  Aligned_cols=51  Identities=27%  Similarity=0.339  Sum_probs=40.9

Q ss_pred             HcCCCCCCEEEEEcCCC-chHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCC
Q 019802          236 ALAPKPGWKVLDACSAP-GNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGA  291 (335)
Q Consensus       236 ~l~~~~g~~VLD~cagp-G~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~  291 (335)
                      ...+++|++||-.|||+ |..+.++|..++ ..+|+++|.+++|++.++    ++|.
T Consensus       180 ~~~~~~g~~VlV~GaG~vG~~aiqlak~~G-a~~Vi~~~~~~~~~~~a~----~lGa  231 (398)
T 2dph_A          180 SAGVKPGSHVYIAGAGPVGRCAAAGARLLG-AACVIVGDQNPERLKLLS----DAGF  231 (398)
T ss_dssp             HTTCCTTCEEEEECCSHHHHHHHHHHHHHT-CSEEEEEESCHHHHHHHH----TTTC
T ss_pred             HcCCCCCCEEEEECCCHHHHHHHHHHHHcC-CCEEEEEcCCHHHHHHHH----HcCC
Confidence            45688999999999877 677778888764 348999999999988764    4676

>1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1

Probab=89.43  E-value=0.85  Score=42.72  Aligned_cols=51  Identities=25%  Similarity=0.335  Sum_probs=40.0

Q ss_pred             HcCCCCCCEEEEEcCCC-chHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCC
Q 019802          236 ALAPKPGWKVLDACSAP-GNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGA  291 (335)
Q Consensus       236 ~l~~~~g~~VLD~cagp-G~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~  291 (335)
                      ...+++|++||-.|||+ |..+.++|..++ ..+|+++|.+++|++.++    ++|.
T Consensus       180 ~~~~~~g~~VlV~GaG~vG~~aiqlAk~~G-a~~Vi~~~~~~~~~~~a~----~lGa  231 (398)
T 1kol_A          180 TAGVGPGSTVYVAGAGPVGLAAAASARLLG-AAVVIVGDLNPARLAHAK----AQGF  231 (398)
T ss_dssp             HTTCCTTCEEEEECCSHHHHHHHHHHHHTT-CSEEEEEESCHHHHHHHH----HTTC
T ss_pred             HcCCCCCCEEEEECCcHHHHHHHHHHHHCC-CCeEEEEcCCHHHHHHHH----HcCC
Confidence            34678999999999876 666677787764 348999999999998875    4687

>3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A*

Probab=89.09  E-value=1.1  Score=41.01  Aligned_cols=52  Identities=19%  Similarity=0.263  Sum_probs=41.5

Q ss_pred             HcCCCCCCEEEEEcCCC-chHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCc
Q 019802          236 ALAPKPGWKVLDACSAP-GNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAAN  293 (335)
Q Consensus       236 ~l~~~~g~~VLD~cagp-G~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~n  293 (335)
                      ...+++|++||-.|||+ |..+.+++..++  .+|+++|.++++++.++    ++|.+.
T Consensus       161 ~~~~~~g~~VlV~GaG~vG~~a~qla~~~G--a~Vi~~~~~~~~~~~~~----~lGa~~  213 (340)
T 3s2e_A          161 VTDTRPGQWVVISGIGGLGHVAVQYARAMG--LRVAAVDIDDAKLNLAR----RLGAEV  213 (340)
T ss_dssp             TTTCCTTSEEEEECCSTTHHHHHHHHHHTT--CEEEEEESCHHHHHHHH----HTTCSE
T ss_pred             HcCCCCCCEEEEECCCHHHHHHHHHHHHCC--CeEEEEeCCHHHHHHHH----HcCCCE
Confidence            45678999999999876 777778888764  49999999999998764    478753

>1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A

Probab=88.77  E-value=1  Score=41.53  Aligned_cols=54  Identities=28%  Similarity=0.310  Sum_probs=41.1

Q ss_pred             HHcCCCCCCEEEEEcCCC-chHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCc
Q 019802          235 AALAPKPGWKVLDACSAP-GNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAAN  293 (335)
Q Consensus       235 ~~l~~~~g~~VLD~cagp-G~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~n  293 (335)
                      ....+++|++||-.|+|+ |..+.+++..++ ..+|+++|.+++|++.++    .+|.+.
T Consensus       165 ~~~~~~~g~~VlV~GaG~vG~~aiqlak~~G-a~~Vi~~~~~~~~~~~a~----~lGa~~  219 (356)
T 1pl8_A          165 RRGGVTLGHKVLVCGAGPIGMVTLLVAKAMG-AAQVVVTDLSATRLSKAK----EIGADL  219 (356)
T ss_dssp             HHHTCCTTCEEEEECCSHHHHHHHHHHHHTT-CSEEEEEESCHHHHHHHH----HTTCSE
T ss_pred             HhcCCCCCCEEEEECCCHHHHHHHHHHHHcC-CCEEEEECCCHHHHHHHH----HhCCCE
Confidence            345788999999999876 556667777653 348999999999988764    468753

>1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1

Probab=88.56  E-value=0.94  Score=41.96  Aligned_cols=52  Identities=21%  Similarity=0.238  Sum_probs=40.5

Q ss_pred             HcCCCCCCEEEEEcCCC-chHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCC
Q 019802          236 ALAPKPGWKVLDACSAP-GNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAA  292 (335)
Q Consensus       236 ~l~~~~g~~VLD~cagp-G~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~  292 (335)
                      ...+++|++||-.|||+ |..+.+++..++ ..+|+++|.+++|++.++    .+|.+
T Consensus       185 ~~~~~~g~~VlV~GaG~vG~~a~qlak~~G-a~~Vi~~~~~~~~~~~a~----~lGa~  237 (371)
T 1f8f_A          185 ALKVTPASSFVTWGAGAVGLSALLAAKVCG-ASIIIAVDIVESRLELAK----QLGAT  237 (371)
T ss_dssp             TTCCCTTCEEEEESCSHHHHHHHHHHHHHT-CSEEEEEESCHHHHHHHH----HHTCS
T ss_pred             ccCCCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEECCCHHHHHHHH----HcCCC
Confidence            45688999999999876 666777877764 237999999999998875    45764

>4eez_A Alcohol dehydrogenase 1; site-saturation mutagenesis, directed evolution, isobutyraldehyde, biofuel, oxidoreductase; HET: PG4; 1.90A {Lactococcus lactis subsp} PDB: 4eex_A*

Probab=88.06  E-value=1.2  Score=40.63  Aligned_cols=52  Identities=19%  Similarity=0.199  Sum_probs=38.8

Q ss_pred             HcCCCCCCEEEEEcCCCchH-HHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCC
Q 019802          236 ALAPKPGWKVLDACSAPGNK-TVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAA  292 (335)
Q Consensus       236 ~l~~~~g~~VLD~cagpG~k-t~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~  292 (335)
                      ...+++|++||=.|||++|- +.+++..+. ..+|+++|.+++|++.++    .+|..
T Consensus       158 ~~~~~~g~~VlV~GaG~~g~~a~~~a~~~~-g~~Vi~~~~~~~r~~~~~----~~Ga~  210 (348)
T 4eez_A          158 VSGVKPGDWQVIFGAGGLGNLAIQYAKNVF-GAKVIAVDINQDKLNLAK----KIGAD  210 (348)
T ss_dssp             HHTCCTTCEEEEECCSHHHHHHHHHHHHTS-CCEEEEEESCHHHHHHHH----HTTCS
T ss_pred             ccCCCCCCEEEEEcCCCccHHHHHHHHHhC-CCEEEEEECcHHHhhhhh----hcCCe
Confidence            45688999999999988654 445555543 479999999999987654    46765

>1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain dehydrogenase reductase, oxidoreductase; HET: NMN AMP; 1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB: 1ujm_A* 1zze_A

Probab=87.17  E-value=2.2  Score=38.30  Aligned_cols=83  Identities=16%  Similarity=0.110  Sum_probs=55.7

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHcC-CCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEE-eccCCCCCCCCCCCceEEEEE
Q 019802          241 PGWKVLDACSAPGNKTVHLAALMK-GKGKIVACELNKERVRRLKDTIKLSGAANIEVL-HGDFLNLDPKDPAYSEVSLIF  318 (335)
Q Consensus       241 ~g~~VLD~cagpG~kt~~la~~~~-~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~-~~D~~~~~~~~~~fd~V~~Il  318 (335)
                      ++.+||=. -|+|+.+.++++.+. .+.+|++++.+..+.+.+.+.+....-.+++++ .+|..+...-...++.++.|+
T Consensus        10 ~~~~vlVT-GatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~vi   88 (342)
T 1y1p_A           10 EGSLVLVT-GANGFVASHVVEQLLEHGYKVRGTARSASKLANLQKRWDAKYPGRFETAVVEDMLKQGAYDEVIKGAAGVA   88 (342)
T ss_dssp             TTCEEEEE-TTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHSTTTEEEEECSCTTSTTTTTTTTTTCSEEE
T ss_pred             CCCEEEEE-CCccHHHHHHHHHHHHCCCEEEEEeCCcccHHHHHHHhhccCCCceEEEEecCCcChHHHHHHHcCCCEEE
Confidence            46788844 457999999887553 346899999999887776665543322468888 799987654344455566666


Q ss_pred             Eecccc
Q 019802          319 CIFTWM  324 (335)
Q Consensus       319 lD~~cs  324 (335)
                      --+..+
T Consensus        89 h~A~~~   94 (342)
T 1y1p_A           89 HIASVV   94 (342)
T ss_dssp             ECCCCC
T ss_pred             EeCCCC
Confidence            655443

>3swr_A DNA (cytosine-5)-methyltransferase 1; epigenetics, DNA methyltransferase fold, maintenance methyla transferase; HET: DNA SFG MES; 2.49A {Homo sapiens} PDB: 3pta_A* 3pt6_A* 3pt9_A* 4da4_A*

Probab=86.83  E-value=1.4  Score=46.52  Aligned_cols=79  Identities=14%  Similarity=0.061  Sum_probs=52.1

Q ss_pred             CCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCC------------CCCC-
Q 019802          242 GWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNL------------DPKD-  308 (335)
Q Consensus       242 g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~------------~~~~-  308 (335)
                      .-+++|++||.||.+.-+-.. +-.-.+.|+|+++...+..+.|..     +..++.+|..++            .... 
T Consensus       540 ~l~~iDLFaG~GGlslGl~~A-G~~~vv~avEid~~A~~ty~~N~p-----~~~~~~~DI~~l~~~~~~~di~~~~~~~l  613 (1002)
T 3swr_A          540 KLRTLDVFSGCGGLSEGFHQA-GISDTLWAIEMWDPAAQAFRLNNP-----GSTVFTEDCNILLKLVMAGETTNSRGQRL  613 (1002)
T ss_dssp             CEEEEEESCTTSHHHHHHHHH-TSEEEEEEECSSHHHHHHHHHHCT-----TSEEECSCHHHHHHHHHHTCSBCTTCCBC
T ss_pred             CCeEEEeccCccHHHHHHHHC-CCCceEEEEECCHHHHHHHHHhCC-----CCccccccHHHHhhhccchhhhhhhhhhc
Confidence            347999999999999888665 211257899999999999888853     345566654321            1100 


Q ss_pred             CCCceEEEEEEecccccc
Q 019802          309 PAYSEVSLIFCIFTWMII  326 (335)
Q Consensus       309 ~~fd~V~~IllD~~cs~~  326 (335)
                      ..-..|+.|+.=|||-+-
T Consensus       614 p~~~~vDll~GGpPCQ~F  631 (1002)
T 3swr_A          614 PQKGDVEMLCGGPPCQGF  631 (1002)
T ss_dssp             CCTTTCSEEEECCCCTTC
T ss_pred             ccCCCeeEEEEcCCCcch
Confidence            001135568889999643

>1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1

Probab=86.62  E-value=1.6  Score=40.09  Aligned_cols=52  Identities=23%  Similarity=0.180  Sum_probs=39.7

Q ss_pred             HHcCCCCCCEEEEEcCCC-chHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCC
Q 019802          235 AALAPKPGWKVLDACSAP-GNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAA  292 (335)
Q Consensus       235 ~~l~~~~g~~VLD~cagp-G~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~  292 (335)
                      ....+++|++||-.|+|+ |..+.+++..++  .+|+++|.++++++.++    .+|.+
T Consensus       162 ~~~~~~~g~~VlV~GaG~vG~~a~qla~~~G--a~Vi~~~~~~~~~~~~~----~lGa~  214 (352)
T 1e3j_A          162 RRAGVQLGTTVLVIGAGPIGLVSVLAAKAYG--AFVVCTARSPRRLEVAK----NCGAD  214 (352)
T ss_dssp             HHHTCCTTCEEEEECCSHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHH----HTTCS
T ss_pred             HhcCCCCCCEEEEECCCHHHHHHHHHHHHcC--CEEEEEcCCHHHHHHHH----HhCCC
Confidence            345788999999999765 555667777654  46999999999998765    46875

>1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=86.51  E-value=1.2  Score=41.41  Aligned_cols=51  Identities=25%  Similarity=0.261  Sum_probs=39.7

Q ss_pred             cCCCCCCEEEEEcCCC-chHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCc
Q 019802          237 LAPKPGWKVLDACSAP-GNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAAN  293 (335)
Q Consensus       237 l~~~~g~~VLD~cagp-G~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~n  293 (335)
                      +.+++|++||-.|+|+ |..+.++|..++  .+|+++|.++++++.+++    +|.+.
T Consensus       190 ~~~~~g~~VlV~GaG~vG~~aiqlak~~G--a~Vi~~~~~~~~~~~a~~----lGa~~  241 (369)
T 1uuf_A          190 WQAGPGKKVGVVGIGGLGHMGIKLAHAMG--AHVVAFTTSEAKREAAKA----LGADE  241 (369)
T ss_dssp             TTCCTTCEEEEECCSHHHHHHHHHHHHTT--CEEEEEESSGGGHHHHHH----HTCSE
T ss_pred             cCCCCCCEEEEECCCHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHH----cCCcE
Confidence            4788999999999876 556667777653  479999999999987764    67653

>3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A*

Probab=86.25  E-value=1.5  Score=40.09  Aligned_cols=51  Identities=16%  Similarity=0.293  Sum_probs=40.4

Q ss_pred             CCCCCCEEEEEcCCC-chHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCc
Q 019802          238 APKPGWKVLDACSAP-GNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAAN  293 (335)
Q Consensus       238 ~~~~g~~VLD~cagp-G~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~n  293 (335)
                      .+++|++||-.|+|+ |..+.+++..++ ..+|+++|.+++|++.++    ++|.+.
T Consensus       168 ~~~~g~~vlv~GaG~vG~~a~qla~~~g-~~~Vi~~~~~~~~~~~~~----~lGa~~  219 (345)
T 3jv7_A          168 LLGPGSTAVVIGVGGLGHVGIQILRAVS-AARVIAVDLDDDRLALAR----EVGADA  219 (345)
T ss_dssp             GCCTTCEEEEECCSHHHHHHHHHHHHHC-CCEEEEEESCHHHHHHHH----HTTCSE
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcC-CCEEEEEcCCHHHHHHHH----HcCCCE
Confidence            578999999999876 666677777764 369999999999998765    468754

>3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A

Probab=85.68  E-value=1.2  Score=40.79  Aligned_cols=53  Identities=25%  Similarity=0.140  Sum_probs=39.9

Q ss_pred             HHcCCCCCCEEEEEcCCC-chHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCC
Q 019802          235 AALAPKPGWKVLDACSAP-GNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAA  292 (335)
Q Consensus       235 ~~l~~~~g~~VLD~cagp-G~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~  292 (335)
                      ....+++|++||=.|+|+ |..+.+++..++ ..+|+++|.+++|++.+++    +|.+
T Consensus       160 ~~~~~~~g~~VlV~GaG~vG~~a~qla~~~G-a~~Vi~~~~~~~~~~~~~~----lGa~  213 (352)
T 3fpc_A          160 ELANIKLGDTVCVIGIGPVGLMSVAGANHLG-AGRIFAVGSRKHCCDIALE----YGAT  213 (352)
T ss_dssp             HHTTCCTTCCEEEECCSHHHHHHHHHHHTTT-CSSEEEECCCHHHHHHHHH----HTCC
T ss_pred             HhcCCCCCCEEEEECCCHHHHHHHHHHHHcC-CcEEEEECCCHHHHHHHHH----hCCc
Confidence            456788999999998766 555667776643 3479999999999887654    6775

>3b5i_A S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like protein; sabath family, indole-3-acetic acid, S-AD methionine; HET: SAH; 2.75A {Arabidopsis thaliana}

Probab=85.63  E-value=1.4  Score=41.40  Aligned_cols=46  Identities=15%  Similarity=0.237  Sum_probs=35.2

Q ss_pred             CCEEEEEcCCCchHHHHHHHHc--------------CCCeEEEEEeCCHHHHHHHHHHHH
Q 019802          242 GWKVLDACSAPGNKTVHLAALM--------------KGKGKIVACELNKERVRRLKDTIK  287 (335)
Q Consensus       242 g~~VLD~cagpG~kt~~la~~~--------------~~~g~i~a~D~~~~rl~~~~~~~~  287 (335)
                      +.+|+|+|||+|..|..+...+              .+..+|+..|+-..-...+=+.+.
T Consensus        53 ~~~IaDlGCssG~Nt~~~v~~ii~~i~~~~~~~~~~~pe~~v~~nDLp~NDFn~lF~~L~  112 (374)
T 3b5i_A           53 PFTAVDLGCSSGANTVHIIDFIVKHISKRFDAAGIDPPEFTAFFSDLPSNDFNTLFQLLP  112 (374)
T ss_dssp             CEEEEEETCCSSHHHHHHHHHHHHHHHHHHHHTTCCCCCEEEEEEECTTSCHHHHHHHSC
T ss_pred             ceEEEecCCCCChhHHHHHHHHHHHHHHHHhhcCCCCCceeEEecCCCccchHHHHhhhh
Confidence            5789999999999999884432              146788899987777777666554

>2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus solfataricus}

Probab=84.23  E-value=2.3  Score=38.80  Aligned_cols=51  Identities=14%  Similarity=-0.022  Sum_probs=38.5

Q ss_pred             CCCCCCEEEEEcCCC-chHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCc
Q 019802          238 APKPGWKVLDACSAP-GNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAAN  293 (335)
Q Consensus       238 ~~~~g~~VLD~cagp-G~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~n  293 (335)
                      .+ +|++||-.|+|+ |..+.+++..+.+..+|+++|.++++++.+++    +|.+.
T Consensus       168 ~~-~g~~VlV~GaG~vG~~aiqlak~~~~Ga~Vi~~~~~~~~~~~~~~----lGa~~  219 (344)
T 2h6e_A          168 KF-AEPVVIVNGIGGLAVYTIQILKALMKNITIVGISRSKKHRDFALE----LGADY  219 (344)
T ss_dssp             TC-SSCEEEEECCSHHHHHHHHHHHHHCTTCEEEEECSCHHHHHHHHH----HTCSE
T ss_pred             CC-CCCEEEEECCCHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHHHH----hCCCE
Confidence            67 999999999865 55566777776212579999999999987754    67653

>4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A*

Probab=84.23  E-value=2.5  Score=39.17  Aligned_cols=54  Identities=22%  Similarity=0.174  Sum_probs=41.2

Q ss_pred             HHcCCCCCCEEEEEcCCC-chHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCc
Q 019802          235 AALAPKPGWKVLDACSAP-GNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAAN  293 (335)
Q Consensus       235 ~~l~~~~g~~VLD~cagp-G~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~n  293 (335)
                      ....+++|++||=.|+|+ |..+.++|..++ ..+|+++|.++++++.+++    +|.+.
T Consensus       176 ~~~~~~~g~~VlV~GaG~vG~~aiqlak~~G-a~~Vi~~~~~~~~~~~a~~----lGa~~  230 (370)
T 4ej6_A          176 DLSGIKAGSTVAILGGGVIGLLTVQLARLAG-ATTVILSTRQATKRRLAEE----VGATA  230 (370)
T ss_dssp             HHHTCCTTCEEEEECCSHHHHHHHHHHHHTT-CSEEEEECSCHHHHHHHHH----HTCSE
T ss_pred             HhcCCCCCCEEEEECCCHHHHHHHHHHHHcC-CCEEEEECCCHHHHHHHHH----cCCCE
Confidence            456789999999999866 556667777653 3489999999999887654    68753

>3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa}

Probab=83.75  E-value=1.9  Score=39.62  Aligned_cols=50  Identities=20%  Similarity=0.205  Sum_probs=38.5

Q ss_pred             HHcCCCCCCEEEEEcCCC-chHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHH
Q 019802          235 AALAPKPGWKVLDACSAP-GNKTVHLAALMKGKGKIVACELNKERVRRLKDT  285 (335)
Q Consensus       235 ~~l~~~~g~~VLD~cagp-G~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~  285 (335)
                      ....+++|++||=.|||+ |..+.++|..++ ...|+++|.+++|++.+++.
T Consensus       173 ~~~~~~~g~~VlV~GaG~vG~~aiqlak~~G-a~~Vi~~~~~~~~~~~a~~l  223 (363)
T 3m6i_A          173 QRAGVRLGDPVLICGAGPIGLITMLCAKAAG-ACPLVITDIDEGRLKFAKEI  223 (363)
T ss_dssp             HHHTCCTTCCEEEECCSHHHHHHHHHHHHTT-CCSEEEEESCHHHHHHHHHH
T ss_pred             HHcCCCCCCEEEEECCCHHHHHHHHHHHHcC-CCEEEEECCCHHHHHHHHHh
Confidence            345788999999998865 556667777653 23499999999999988764

>4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal binding-site; 1.87A {Escherichia coli}

Probab=83.59  E-value=2.8  Score=38.09  Aligned_cols=54  Identities=13%  Similarity=0.057  Sum_probs=40.1

Q ss_pred             HHHcCCCCCCEEEEEcCCCchH-HHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCC
Q 019802          234 AAALAPKPGWKVLDACSAPGNK-TVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAA  292 (335)
Q Consensus       234 ~~~l~~~~g~~VLD~cagpG~k-t~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~  292 (335)
                      ......++|++||=.|||+.|. +.+++..++ ...++++|.+++|++.++    ++|..
T Consensus       153 ~~~~~~~~g~~VlV~GaG~vG~~aiq~ak~~G-~~~vi~~~~~~~k~~~a~----~lGa~  207 (346)
T 4a2c_A          153 FHLAQGCENKNVIIIGAGTIGLLAIQCAVALG-AKSVTAIDISSEKLALAK----SFGAM  207 (346)
T ss_dssp             HHHTTCCTTSEEEEECCSHHHHHHHHHHHHTT-CSEEEEEESCHHHHHHHH----HTTCS
T ss_pred             HHHhccCCCCEEEEECCCCcchHHHHHHHHcC-CcEEEEEechHHHHHHHH----HcCCe
Confidence            3456788999999999877554 445666654 457899999999988765    47875

>3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021}

Probab=82.96  E-value=2  Score=39.57  Aligned_cols=52  Identities=13%  Similarity=0.140  Sum_probs=39.7

Q ss_pred             HcCCCCCCEEEEEcCCC-chHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCc
Q 019802          236 ALAPKPGWKVLDACSAP-GNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAAN  293 (335)
Q Consensus       236 ~l~~~~g~~VLD~cagp-G~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~n  293 (335)
                      ...+++|++||-.|+|+ |..+.+++..++  .+|+++|.++++++.++    ++|.+.
T Consensus       184 ~~~~~~g~~VlV~G~G~vG~~a~qla~~~G--a~Vi~~~~~~~~~~~~~----~lGa~~  236 (363)
T 3uog_A          184 KGHLRAGDRVVVQGTGGVALFGLQIAKATG--AEVIVTSSSREKLDRAF----ALGADH  236 (363)
T ss_dssp             TTCCCTTCEEEEESSBHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHH----HHTCSE
T ss_pred             hcCCCCCCEEEEECCCHHHHHHHHHHHHcC--CEEEEEecCchhHHHHH----HcCCCE
Confidence            35678999999999776 555667777653  58999999999988764    468753

>3av4_A DNA (cytosine-5)-methyltransferase 1; CXXC-type zinc finger/C5-methyltransferase family; HET: DNA; 2.75A {Mus musculus} PDB: 3av5_A* 3av6_A*

Probab=82.95  E-value=1.6  Score=47.48  Aligned_cols=78  Identities=14%  Similarity=0.046  Sum_probs=51.1

Q ss_pred             CCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCC------------CCCC-
Q 019802          242 GWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNL------------DPKD-  308 (335)
Q Consensus       242 g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~------------~~~~-  308 (335)
                      .-+++|++||.||.+.-+-.. +-.-.+.|+|+++..++..+.|..     +..++++|..++            .... 
T Consensus       851 ~l~viDLFsG~GGlslGfe~A-G~~~vv~avEid~~A~~ty~~N~p-----~~~~~~~DI~~l~~~~~~gdi~~~~~~~l  924 (1330)
T 3av4_A          851 KLRTLDVFSGCGGLSEGFHQA-GISETLWAIEMWDPAAQAFRLNNP-----GTTVFTEDCNVLLKLVMAGEVTNSLGQRL  924 (1330)
T ss_dssp             CEEEEEETCTTSHHHHHHHHT-TSEEEEEEECCSHHHHHHHHHHCT-----TSEEECSCHHHHHHHHTTTCSBCSSCCBC
T ss_pred             CceEEecccCccHHHHHHHHC-CCCceEEEEECCHHHHHHHHHhCC-----CCcEeeccHHHHhHhhhccchhhhhhhhc
Confidence            457999999999999987653 211258899999999999988842     334555554321            1100 


Q ss_pred             CCCceEEEEEEeccccc
Q 019802          309 PAYSEVSLIFCIFTWMI  325 (335)
Q Consensus       309 ~~fd~V~~IllD~~cs~  325 (335)
                      .....|+.|+-=|||-+
T Consensus       925 p~~~~vDvl~GGpPCQ~  941 (1330)
T 3av4_A          925 PQKGDVEMLCGGPPCQG  941 (1330)
T ss_dssp             CCTTTCSEEEECCCCTT
T ss_pred             cccCccceEEecCCCcc
Confidence            01123556777999965

>1wma_A Carbonyl reductase [NADPH] 1; oxidoreductase; HET: AB3 NDP PE5 P33; 1.24A {Homo sapiens} SCOP: c.2.1.2 PDB: 3bhi_A* 3bhj_A* 3bhm_A* 2pfg_A* 1n5d_A* 2hrb_A*

Probab=82.91  E-value=1.4  Score=38.18  Aligned_cols=83  Identities=10%  Similarity=0.043  Sum_probs=58.3

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHcC--CCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCC-------CC
Q 019802          241 PGWKVLDACSAPGNKTVHLAALMK--GKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDP-------AY  311 (335)
Q Consensus       241 ~g~~VLD~cagpG~kt~~la~~~~--~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~~~~~-------~f  311 (335)
                      .+.+|| +.-|.|+.+.++++.+.  ...+|+.++.+..+++.+.+.+...+. ++.++.+|..+...-..       .|
T Consensus         3 ~~k~vl-ITGasggIG~~~a~~L~~~~g~~V~~~~r~~~~~~~~~~~l~~~~~-~~~~~~~Dl~~~~~~~~~~~~~~~~~   80 (276)
T 1wma_A            3 GIHVAL-VTGGNKGIGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQLQAEGL-SPRFHQLDIDDLQSIRALRDFLRKEY   80 (276)
T ss_dssp             CCCEEE-ESSCSSHHHHHHHHHHHHHSSSEEEEEESSHHHHHHHHHHHHHTTC-CCEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCEEE-EeCCCcHHHHHHHHHHHHhcCCeEEEEeCChHHHHHHHHHHHhcCC-eeEEEECCCCCHHHHHHHHHHHHHhc
Confidence            355677 55577999998887653  346899999999999888888877664 57888999877542111       13


Q ss_pred             ceEEEEEEeccccc
Q 019802          312 SEVSLIFCIFTWMI  325 (335)
Q Consensus       312 d~V~~IllD~~cs~  325 (335)
                      ..++.|+..+....
T Consensus        81 g~id~li~~Ag~~~   94 (276)
T 1wma_A           81 GGLDVLVNNAGIAF   94 (276)
T ss_dssp             SSEEEEEECCCCCC
T ss_pred             CCCCEEEECCcccc
Confidence            36777777665543

>1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A*

Probab=82.90  E-value=1.8  Score=40.10  Aligned_cols=53  Identities=13%  Similarity=0.108  Sum_probs=39.8

Q ss_pred             HcCCCCCCEEEEEcCCC-chHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCc
Q 019802          236 ALAPKPGWKVLDACSAP-GNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAAN  293 (335)
Q Consensus       236 ~l~~~~g~~VLD~cagp-G~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~n  293 (335)
                      ...+++|++||-.|+|+ |..+.++|..++ ..+|+++|.+++|++.++    ++|.+.
T Consensus       186 ~~~~~~g~~VlV~GaG~vG~~aiqlak~~G-a~~Vi~~~~~~~~~~~a~----~lGa~~  239 (373)
T 1p0f_A          186 TAKVTPGSTCAVFGLGGVGFSAIVGCKAAG-ASRIIGVGTHKDKFPKAI----ELGATE  239 (373)
T ss_dssp             TTCCCTTCEEEEECCSHHHHHHHHHHHHHT-CSEEEEECSCGGGHHHHH----HTTCSE
T ss_pred             ccCCCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEECCCHHHHHHHH----HcCCcE
Confidence            35678999999999765 455567777654 238999999999988765    478753

>1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1

Probab=82.88  E-value=1.9  Score=39.96  Aligned_cols=53  Identities=21%  Similarity=0.247  Sum_probs=39.5

Q ss_pred             HcCCCCCCEEEEEcCCC-chHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCc
Q 019802          236 ALAPKPGWKVLDACSAP-GNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAAN  293 (335)
Q Consensus       236 ~l~~~~g~~VLD~cagp-G~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~n  293 (335)
                      ...+++|++||-.|+|+ |..+.+++..++ ..+|+++|.++++++.++    ++|.+.
T Consensus       187 ~~~~~~g~~VlV~GaG~vG~~a~qla~~~G-a~~Vi~~~~~~~~~~~~~----~lGa~~  240 (374)
T 1cdo_A          187 TAKVEPGSTCAVFGLGAVGLAAVMGCHSAG-AKRIIAVDLNPDKFEKAK----VFGATD  240 (374)
T ss_dssp             TTCCCTTCEEEEECCSHHHHHHHHHHHHTT-CSEEEEECSCGGGHHHHH----HTTCCE
T ss_pred             ccCCCCCCEEEEECCCHHHHHHHHHHHHcC-CCEEEEEcCCHHHHHHHH----HhCCce
Confidence            35678999999999765 555567777653 238999999999998765    468753

>1fmc_A 7 alpha-hydroxysteroid dehydrogenase; short-chain dehydrogenase/reductase, bIle acid catabolism, oxidoreductase; HET: CHO NAD; 1.80A {Escherichia coli} SCOP: c.2.1.2 PDB: 1ahi_A* 1ahh_A*

Probab=82.70  E-value=1.3  Score=38.27  Aligned_cols=63  Identities=14%  Similarity=0.174  Sum_probs=47.9

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHc-CCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCC
Q 019802          241 PGWKVLDACSAPGNKTVHLAALM-KGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLD  305 (335)
Q Consensus       241 ~g~~VLD~cagpG~kt~~la~~~-~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~  305 (335)
                      .+.+|| +.-|.|+.+.++++.+ ....+|+++|.++.+++.+.+.++..+. ++.++.+|..+..
T Consensus        10 ~~~~vl-VtGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~D~~~~~   73 (255)
T 1fmc_A           10 DGKCAI-ITGAGAGIGKEIAITFATAGASVVVSDINADAANHVVDEIQQLGG-QAFACRCDITSEQ   73 (255)
T ss_dssp             TTCEEE-ETTTTSHHHHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHTTC-CEEEEECCTTCHH
T ss_pred             CCCEEE-EECCccHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHHhCC-ceEEEEcCCCCHH
Confidence            456677 5556799999888765 3346899999999998888887776664 5788889987654

>2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ...

Probab=82.28  E-value=2  Score=39.71  Aligned_cols=53  Identities=15%  Similarity=0.164  Sum_probs=39.5

Q ss_pred             HcCCCCCCEEEEEcCCC-chHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCc
Q 019802          236 ALAPKPGWKVLDACSAP-GNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAAN  293 (335)
Q Consensus       236 ~l~~~~g~~VLD~cagp-G~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~n  293 (335)
                      ...+++|++||-.|+|+ |..+.+++..++ ..+|+++|.++++++.++    ++|.+.
T Consensus       186 ~~~~~~g~~VlV~GaG~vG~~a~qla~~~G-a~~Vi~~~~~~~~~~~~~----~lGa~~  239 (374)
T 2jhf_A          186 VAKVTQGSTCAVFGLGGVGLSVIMGCKAAG-AARIIGVDINKDKFAKAK----EVGATE  239 (374)
T ss_dssp             TTCCCTTCEEEEECCSHHHHHHHHHHHHTT-CSEEEEECSCGGGHHHHH----HTTCSE
T ss_pred             ccCCCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEEcCCHHHHHHHH----HhCCce
Confidence            35678999999999765 555567776653 238999999999988764    468753

>4ft4_B DNA (cytosine-5)-methyltransferase 1; chromodomain, BAH domain, DNA methyltransferase domain, H3K9 binding, methylation, transferase; HET: DNA MLY SAH; 2.70A {Zea mays} PDB: 4ft2_A* 4fsx_A*

Probab=82.26  E-value=1.7  Score=44.62  Aligned_cols=46  Identities=22%  Similarity=0.075  Sum_probs=35.7

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHcC---CC-eEEEEEeCCHHHHHHHHHHH
Q 019802          241 PGWKVLDACSAPGNKTVHLAALMK---GK-GKIVACELNKERVRRLKDTI  286 (335)
Q Consensus       241 ~g~~VLD~cagpG~kt~~la~~~~---~~-g~i~a~D~~~~rl~~~~~~~  286 (335)
                      .--+|||+.||.||.++-+.+...   .. -.+.|+|+++..++..+.|.
T Consensus       211 k~ltvIDLFAG~GGls~Gfe~AG~~~~~~f~vv~AvE~d~~A~~Ty~~Nh  260 (784)
T 4ft4_B          211 RTATLLDLYSGCGGMSTGLCLGAALSGLKLETRWAVDFNSFACQSLKYNH  260 (784)
T ss_dssp             EEEEEEEETCTTSHHHHHHHHHHHHHTEEEEEEEEEESCHHHHHHHHHHC
T ss_pred             CCCeEEEeCcCccHHHHHHHHhCcccCCceeEEEEEeCCHHHHHHHHHHC
Confidence            345799999999999987765421   01 25789999999999999884

>1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A*

Probab=82.24  E-value=2  Score=39.75  Aligned_cols=53  Identities=19%  Similarity=0.223  Sum_probs=39.2

Q ss_pred             HcCCCCCCEEEEEcCCC-chHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCc
Q 019802          236 ALAPKPGWKVLDACSAP-GNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAAN  293 (335)
Q Consensus       236 ~l~~~~g~~VLD~cagp-G~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~n  293 (335)
                      ...+++|++||-.|+|+ |..+.++|..++ ..+|+++|.++++++.++    ++|.+.
T Consensus       190 ~~~~~~g~~VlV~GaG~vG~~aiqlak~~G-a~~Vi~~~~~~~~~~~a~----~lGa~~  243 (376)
T 1e3i_A          190 TAKVTPGSTCAVFGLGCVGLSAIIGCKIAG-ASRIIAIDINGEKFPKAK----ALGATD  243 (376)
T ss_dssp             TSCCCTTCEEEEECCSHHHHHHHHHHHHTT-CSEEEEECSCGGGHHHHH----HTTCSE
T ss_pred             hcCCCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEEcCCHHHHHHHH----HhCCcE
Confidence            35678999999999765 445566776653 348999999999988764    478753

>2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A*

Probab=81.96  E-value=2  Score=39.67  Aligned_cols=53  Identities=19%  Similarity=0.225  Sum_probs=39.5

Q ss_pred             HcCCCCCCEEEEEcCCC-chHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCc
Q 019802          236 ALAPKPGWKVLDACSAP-GNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAAN  293 (335)
Q Consensus       236 ~l~~~~g~~VLD~cagp-G~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~n  293 (335)
                      ...+++|++||-.|+|+ |..+.+++..++ ..+|+++|.++++++.++    ++|.+.
T Consensus       185 ~~~~~~g~~VlV~GaG~vG~~avqla~~~G-a~~Vi~~~~~~~~~~~~~----~lGa~~  238 (373)
T 2fzw_A          185 TAKLEPGSVCAVFGLGGVGLAVIMGCKVAG-ASRIIGVDINKDKFARAK----EFGATE  238 (373)
T ss_dssp             TTCCCTTCEEEEECCSHHHHHHHHHHHHHT-CSEEEEECSCGGGHHHHH----HHTCSE
T ss_pred             hcCCCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEEcCCHHHHHHHH----HcCCce
Confidence            35678999999999765 455567776654 238999999999998775    468753

>1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A

Probab=81.68  E-value=4  Score=37.10  Aligned_cols=50  Identities=28%  Similarity=0.265  Sum_probs=38.1

Q ss_pred             cCCCCCCEEEEEcCCC-chHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCC
Q 019802          237 LAPKPGWKVLDACSAP-GNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAA  292 (335)
Q Consensus       237 l~~~~g~~VLD~cagp-G~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~  292 (335)
                      ..+++|++||-.|+|+ |..+.+++..++  .+|+++|.++++++.++    ++|..
T Consensus       160 ~~~~~g~~VlV~GaG~vG~~~~~~a~~~G--a~Vi~~~~~~~~~~~~~----~lGa~  210 (339)
T 1rjw_A          160 TGAKPGEWVAIYGIGGLGHVAVQYAKAMG--LNVVAVDIGDEKLELAK----ELGAD  210 (339)
T ss_dssp             HTCCTTCEEEEECCSTTHHHHHHHHHHTT--CEEEEECSCHHHHHHHH----HTTCS
T ss_pred             cCCCCCCEEEEECCCHHHHHHHHHHHHcC--CEEEEEeCCHHHHHHHH----HCCCC
Confidence            4788999999999864 445556666643  59999999999998765    46764

>1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A

Probab=81.19  E-value=2.1  Score=39.41  Aligned_cols=51  Identities=16%  Similarity=0.078  Sum_probs=38.9

Q ss_pred             cCCCCCCEEEEEcCCC-chHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCc
Q 019802          237 LAPKPGWKVLDACSAP-GNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAAN  293 (335)
Q Consensus       237 l~~~~g~~VLD~cagp-G~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~n  293 (335)
                      ..+++|++||-.|+|+ |..+.+++..++  .+|+++|.++++++.+++    +|.+.
T Consensus       175 ~~~~~g~~VlV~GaG~vG~~~~qlak~~G--a~Vi~~~~~~~~~~~~~~----lGa~~  226 (360)
T 1piw_A          175 NGCGPGKKVGIVGLGGIGSMGTLISKAMG--AETYVISRSSRKREDAMK----MGADH  226 (360)
T ss_dssp             TTCSTTCEEEEECCSHHHHHHHHHHHHHT--CEEEEEESSSTTHHHHHH----HTCSE
T ss_pred             cCCCCCCEEEEECCCHHHHHHHHHHHHCC--CEEEEEcCCHHHHHHHHH----cCCCE
Confidence            5788999999999865 445566776654  479999999999887754    67653

>3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana}

Probab=81.03  E-value=1.4  Score=40.89  Aligned_cols=54  Identities=15%  Similarity=0.156  Sum_probs=40.4

Q ss_pred             HHcCCCCCCEEEEEcCCC-chHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCc
Q 019802          235 AALAPKPGWKVLDACSAP-GNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAAN  293 (335)
Q Consensus       235 ~~l~~~~g~~VLD~cagp-G~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~n  293 (335)
                      +...+++|++||=.|||+ |..+.+++..++ ..+|+++|.+++|++.++    ++|.+.
T Consensus       187 ~~~~~~~g~~VlV~GaG~vG~~a~q~a~~~G-a~~Vi~~~~~~~~~~~a~----~lGa~~  241 (378)
T 3uko_A          187 NTAKVEPGSNVAIFGLGTVGLAVAEGAKTAG-ASRIIGIDIDSKKYETAK----KFGVNE  241 (378)
T ss_dssp             TTTCCCTTCCEEEECCSHHHHHHHHHHHHHT-CSCEEEECSCTTHHHHHH----TTTCCE
T ss_pred             hhcCCCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEEcCCHHHHHHHH----HcCCcE
Confidence            345678999999998865 556667777654 248999999999998764    578753

>4dkj_A Cytosine-specific methyltransferase; CG-specificity, DNA intercalation, CPG sequence, cytosine C5 methylation; HET: DNA C37 5CM SAH; 2.15A {Mycoplasma penetrans}

Probab=80.82  E-value=1.4  Score=41.82  Aligned_cols=46  Identities=15%  Similarity=0.086  Sum_probs=36.3

Q ss_pred             CEEEEEcCCCchHHHHHHHHcCCCeE----EEEEeCCHHHHHHHHHHHHH
Q 019802          243 WKVLDACSAPGNKTVHLAALMKGKGK----IVACELNKERVRRLKDTIKL  288 (335)
Q Consensus       243 ~~VLD~cagpG~kt~~la~~~~~~g~----i~a~D~~~~rl~~~~~~~~~  288 (335)
                      -+|+|+|||-||.+..+-+.-.+-..    |.++|+++..++..+.|...
T Consensus        11 lrvldLFsGiGG~~~Gl~~aG~~~~~~~~~v~avEid~~A~~ty~~n~~~   60 (403)
T 4dkj_A           11 IKVFEAFAGIGSQFKALKNIARSKNWEIQHSGMVEWFVDAIVSYVAIHSK   60 (403)
T ss_dssp             EEEEEETCTTCHHHHHHHHHHHHHTEEEEEEEEECCBHHHHHHHHHHHCS
T ss_pred             ceEEEEecCcCHHHHHHHHhCCccccceeeEEEEecCHHHHHHHHHHcCC
Confidence            48999999999999888665210113    88999999999999998763

>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}

Probab=80.71  E-value=0.92  Score=33.88  Aligned_cols=54  Identities=15%  Similarity=0.195  Sum_probs=37.2

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHcC-CC-eEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCC
Q 019802          241 PGWKVLDACSAPGNKTVHLAALMK-GK-GKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLN  303 (335)
Q Consensus       241 ~g~~VLD~cagpG~kt~~la~~~~-~~-g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~  303 (335)
                      ++.+|+=+|+  |+.+.+++..+. .. .+|+++|.++.+++.+.    ..   .+.+...|..+
T Consensus         4 ~~~~v~I~G~--G~iG~~~~~~l~~~g~~~v~~~~r~~~~~~~~~----~~---~~~~~~~d~~~   59 (118)
T 3ic5_A            4 MRWNICVVGA--GKIGQMIAALLKTSSNYSVTVADHDLAALAVLN----RM---GVATKQVDAKD   59 (118)
T ss_dssp             TCEEEEEECC--SHHHHHHHHHHHHCSSEEEEEEESCHHHHHHHH----TT---TCEEEECCTTC
T ss_pred             CcCeEEEECC--CHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHH----hC---CCcEEEecCCC
Confidence            3567888887  777776665442 23 58999999999887765    22   34567777755

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	335
d2b9ea1	293	c.66.1.38 (A:133-425) NOL1R {Human (Homo sapiens)	1e-23
d1ixka_	313	c.66.1.38 (A:) Hypothetical methyltransferase PH13	1e-14
d1sqga2	284	c.66.1.38 (A:145-428) Ribosomal RNA small subunit	8e-11
d2b25a1	324	c.66.1.13 (A:6-329) Hypothetical protein FLJ20628	6e-09
d1nt2a_	209	c.66.1.3 (A:) Fibrillarin homologue {Archaeon Arch	1e-08
d1g8aa_	227	c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyro	4e-08
d1yb2a1	250	c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {T	6e-07
d1i9ga_	264	c.66.1.13 (A:) Probable methyltransferase Rv2118c	2e-06
d1l3ia_	186	c.66.1.22 (A:) Precorrin-6Y methyltransferase (Cbi	4e-05
d1u2za_	406	c.66.1.31 (A:) Catalytic, N-terminal domain of his	2e-04
d1g8sa_	230	c.66.1.3 (A:) Fibrillarin homologue {Archaeon Meth	7e-04
d1nw3a_	328	c.66.1.31 (A:) Catalytic, N-terminal domain of his	0.004

>d2b9ea1 c.66.1.38 (A:133-425) NOL1R {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: NOL1R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 96.7 bits (239), Expect = 1e-23
 Identities = 68/170 (40%), Positives = 90/170 (52%), Gaps = 19/170 (11%)

Query: 169 PRYVRVNTLKMDVDSAVLELGKQFV-------------------VQKDDLVPDLLILPPG 209
           PR+VRVNTLK   D  V    +Q                        D L+P+LL+ P  
Sbjct: 3   PRFVRVNTLKTCSDDVVDYFKRQGFSYQGRASSLDDLRALKGKHFLLDPLMPELLVFPAQ 62

Query: 210 CDLHVHPLIVNGCVFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKI 269
            DLH HPL   G + LQ +AS + A  L P PG  V+DAC+APGNKT HLAAL+K +GKI
Sbjct: 63  TDLHEHPLYRAGHLILQDRASCLPAMLLDPPPGSHVIDACAAPGNKTSHLAALLKNQGKI 122

Query: 270 VACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVSLIFC 319
            A +L+ +R+  +   +  +G +  E+   DFL + P DP Y EV  I  
Sbjct: 123 FAFDLDAKRLASMATLLARAGVSCCELAEEDFLAVSPSDPRYHEVHYILL 172

>d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 313

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: Hypothetical methyltransferase PH1374
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

 Score = 71.6 bits (174), Expect = 1e-14
 Identities = 50/196 (25%), Positives = 89/196 (45%), Gaps = 3/196 (1%)

Query: 137 AIQLALAQLLVRNKVKSI-EDLMALYQTPDVPKPRYVRVNTLKMDVDSAVLELGKQ-FVV 194
            ++L  ++L      +   E  + + +  + P PR  RVNTLK+ V   V  L K+ F  
Sbjct: 9   LLRLGYSKLFADRYFQLWGERAIRIAEAMEKPLPRCFRVNTLKISVQDLVKRLNKKGFQF 68

Query: 195 QKDDLVPDLLILPPG-CDLHVHPLIVNGCVFLQGKASSMVAAALAPKPGWKVLDACSAPG 253
           ++     +   L      +   P  + G +++Q  +S     AL PKPG  V D  +APG
Sbjct: 69  KRVPWAKEGFCLTREPFSITSTPEFLTGLIYIQEASSMYPPVALDPKPGEIVADMAAAPG 128

Query: 254 NKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSE 313
            KT +LA LM+  G I A ++++ R+R  +  +   G  N+ + H   L++   +  + +
Sbjct: 129 GKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVLNVILFHSSSLHIGELNVEFDK 188

Query: 314 VSLIFCIFTWMIIMFH 329
           + L         I  +
Sbjct: 189 ILLDAPCTGSGTIHKN 204

>d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain {Escherichia coli [TaxId: 562]} Length = 284

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain
species: Escherichia coli [TaxId: 562]

 Score = 59.7 bits (143), Expect = 8e-11
 Identities = 35/165 (21%), Positives = 67/165 (40%), Gaps = 2/165 (1%)

Query: 155 EDLMALYQTPDVPKPRYVRVNTLKMDVDSAVLELGKQFV-VQKDDLVPDLLILPPGCDLH 213
           E   ++ +  +   P ++R+N      DS +  L +  +        PD + L     +H
Sbjct: 15  EQWQSIVEANNQRPPMWLRINRTHHSRDSWLALLDEAGMKGFPHADYPDAVRLETPAPVH 74

Query: 214 VHPLIVNGCVFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACE 273
             P   +G V +Q  ++      LAP+ G  +LD C+APG KT H+  +      + A +
Sbjct: 75  ALPGFEDGWVTVQDASAQGCMTWLAPQNGEHILDLCAAPGGKTTHILEVAPEAQVV-AVD 133

Query: 274 LNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVSLIF 318
           ++++R+ R+ D +K  G                      +  L+ 
Sbjct: 134 IDEQRLSRVYDNLKRLGMKATVKQGDGRYPSQWCGEQQFDRILLD 178

>d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]} Length = 324

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein FLJ20628
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.4 bits (130), Expect = 6e-09
 Identities = 21/120 (17%), Positives = 47/120 (39%), Gaps = 12/120 (10%)

Query: 202 DLLILPPGCDLHVHPLIVNGCVFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAA 261
             ++  P  + +V  +   G      K  +M+ + +   PG  VL+A S  G  ++ L+ 
Sbjct: 60  QYMLRRPALEDYVVLMK-RGTAITFPKDINMILSMMDINPGDTVLEAGSGSGGMSLFLSK 118

Query: 262 LMKGKGKIVACELNKERVRRLKDTIKLSGAA-----------NIEVLHGDFLNLDPKDPA 310
            +  +G++++ E+ K+     K   K    +           N++ +H D         +
Sbjct: 119 AVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHKDISGATEDIKS 178

>d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 209

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

 Score = 52.4 bits (125), Expect = 1e-08
 Identities = 22/107 (20%), Positives = 39/107 (36%), Gaps = 9/107 (8%)

Query: 231 SMVAAALA------PKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKD 284
           S +AA +        +   +VL   +A G    HLA ++  +G I A E + +   +L +
Sbjct: 40  SKLAAMILKGHRLKLRGDERVLYLGAASGTTVSHLADIVD-EGIIYAVEYSAKPFEKLLE 98

Query: 285 TIKLSGAANIEVLHGDFLNLDPKDPAYSEVSLIFCIFTWMIIMFHGF 331
            ++     NI  L  D            +V LI+        +    
Sbjct: 99  LVRERN--NIIPLLFDASKPWKYSGIVEKVDLIYQDIAQKNQIEILK 143

>d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 227

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

 Score = 50.9 bits (121), Expect = 4e-08
 Identities = 24/106 (22%), Positives = 38/106 (35%), Gaps = 9/106 (8%)

Query: 231 SMVAAALA-------PKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLK 283
           S + AA+         KPG  VL    A G    H++ ++  +GKI   E +   +R L 
Sbjct: 56  SKLGAAIMNGLKNFPIKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELV 115

Query: 284 DTIKLSGAANIEVLHGDFLNLDPKDPAYSEVSLIFCIFTWMIIMFH 329
               +    NI  + GD    +       +V +IF           
Sbjct: 116 P--IVEERRNIVPILGDATKPEEYRALVPKVDVIFEDVAQPTQAKI 159

>d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]} Length = 250

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein Ta0852
species: Thermoplasma acidophilum [TaxId: 2303]

 Score = 47.4 bits (112), Expect = 6e-07
 Identities = 17/111 (15%), Positives = 42/111 (37%), Gaps = 5/111 (4%)

Query: 181 VDSAVLELGKQFVVQKDDLVP----DLLILPPGCDLHVHPLIVNGCVFLQGKASSMVAAA 236
           V   +  LG   V++  D +       ++           +I      +    +S +   
Sbjct: 22  VKGKMHHLGISRVIEPGDELIVSGKSFIVSDFSPMYFGR-VIRRNTQIISEIDASYIIMR 80

Query: 237 LAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIK 287
              +PG  +L+     GN + ++   + GKG +   E +++ +++  D + 
Sbjct: 81  CGLRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLS 131

>d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]} Length = 264

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Probable methyltransferase Rv2118c
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 46.1 bits (109), Expect = 2e-06
 Identities = 14/87 (16%), Positives = 34/87 (39%), Gaps = 3/87 (3%)

Query: 228 KASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIK 287
           K ++ +       PG +VL+A +  G  T+ L   +   G++++ E   +     +  + 
Sbjct: 83  KDAAQIVHEGDIFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVS 142

Query: 288 LSGAA---NIEVLHGDFLNLDPKDPAY 311
                   N  ++  D  + +  D + 
Sbjct: 143 GCYGQPPDNWRLVVSDLADSELPDGSV 169

>d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 186

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Precorrin-6Y methyltransferase (CbiT)
domain: Precorrin-6Y methyltransferase (CbiT)
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

 Score = 41.3 bits (96), Expect = 4e-05
 Identities = 15/97 (15%), Positives = 31/97 (31%), Gaps = 4/97 (4%)

Query: 232 MVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSG- 290
           ++     P      +D     G  T+    L     ++ A + N E +   +  ++  G 
Sbjct: 24  LIMCLAEPGKNDVAVDVGCGTGGVTLE---LAGRVRRVYAIDRNPEAISTTEMNLQRHGL 80

Query: 291 AANIEVLHGDFLNLDPKDPAYSEVSLIFCIFTWMIIM 327
             N+ ++ GD      K P      +         I+
Sbjct: 81  GDNVTLMEGDAPEALCKIPDIDIAVVGGSGGELQEIL 117

>d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 406

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 40.4 bits (94), Expect = 2e-04
 Identities = 24/99 (24%), Positives = 32/99 (32%), Gaps = 11/99 (11%)

Query: 231 SMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELN-------KERVRRLK 283
           S V      K G   +D  S  GN  V  AAL  G      CE+          +   LK
Sbjct: 206 SDVYQQCQLKKGDTFMDLGSGVGNCVVQ-AALECGCALSFGCEIMDDASDLTILQYEELK 264

Query: 284 DTIKLSGAANIEV---LHGDFLNLDPKDPAYSEVSLIFC 319
              KL G     V   L   F++ +       +  +I  
Sbjct: 265 KRCKLYGMRLNNVEFSLKKSFVDNNRVAELIPQCDVILV 303

>d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 230

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

 Score = 38.2 bits (88), Expect = 7e-04
 Identities = 21/104 (20%), Positives = 35/104 (33%), Gaps = 10/104 (9%)

Query: 231 SMVAAALA-------PKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLK 283
           S +AAA+         K   K+L   ++ G    H+A +      + A E     +R L 
Sbjct: 57  SKLAAAIIKGLKVMPIKRDSKILYLGASAGTTPSHVADIADKG-IVYAIEYAPRIMRELL 115

Query: 284 DTIKLSGAANIEVLHGDFLNLDPKDPAYSEVSLIFCIFTWMIIM 327
           D    +   NI  + GD            +V +I+         
Sbjct: 116 D--ACAERENIIPILGDANKPQEYANIVEKVDVIYEDVAQPNQA 157

>d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]} Length = 328

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.4 bits (83), Expect = 0.004
 Identities = 14/98 (14%), Positives = 30/98 (30%), Gaps = 11/98 (11%)

Query: 231 SMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSG 290
           + +   +        +D  S  G   + +AA    K      E      +  +   +   
Sbjct: 141 AQMIDEIKMTDDDLFVDLGSGVGQVVLQVAAATNCK-HHYGVEKADIPAKYAETMDREFR 199

Query: 291 AA---------NIEVLHGDFLNLDPKDPAYSEVSLIFC 319
                         +  GDFL+ + ++   +  S+IF 
Sbjct: 200 KWMKWYGKKHAEYTLERGDFLSEEWRER-IANTSVIFV 236

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	335
d1ixka_	313	Hypothetical methyltransferase PH1374 {Archaeon Py	100.0
d1sqga2	284	Ribosomal RNA small subunit methyltransferase B, R	100.0
d2b9ea1	293	NOL1R {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1sqga1	140	Ribosomal RNA small subunit methyltransferase B, R	99.55
d1nt2a_	209	Fibrillarin homologue {Archaeon Archaeoglobus fulg	99.47
d1dl5a1	213	Protein-L-isoaspartyl O-methyltransferase {Thermot	99.45
d1i9ga_	264	Probable methyltransferase Rv2118c {Mycobacterium	99.44
d1g8aa_	227	Fibrillarin homologue {Archaeon Pyrococcus horikos	99.41
d1xxla_	234	Hypothetical protein YcgJ {Bacillus subtilis [TaxI	99.41
d1wxxa2	318	Hypothetical protein TTHA1280, middle and C-termin	99.39
d1ey1a_	139	Antitermination factor NusB {Escherichia coli [Tax	99.38
d1m6ya2	192	TM0872, methyltransferase domain {Thermotoga marit	99.37
d1yb2a1	250	Hypothetical protein Ta0852 {Thermoplasma acidophi	99.35
d1l3ia_	186	Precorrin-6Y methyltransferase (CbiT) {Archaeon Me	99.33
d1o54a_	266	Hypothetical protein TM0748 {Thermotoga maritima [	99.3
d1tzva_	141	Antitermination factor NusB {Thermotoga maritima [	99.3
d2b25a1	324	Hypothetical protein FLJ20628 {Human (Homo sapiens	99.29
d1vl5a_	231	Hypothetical protein BH2331 {Bacillus halodurans [	99.29
d2as0a2	324	Hypothetical protein PH1915, middle and C-terminal	99.29
d1dusa_	194	Hypothetical protein MJ0882 {Archaeon Methanococcu	99.25
d1nkva_	245	Hypothetical Protein YjhP {Escherichia coli [TaxId	99.23
d1wy7a1	201	Hypothetical protein PH1948 {Archaeon Pyrococcus h	99.23
d1i1na_	224	Protein-L-isoaspartyl O-methyltransferase {Human (	99.2
d1eyva_	131	Antitermination factor NusB {Mycobacterium tubercu	99.2
d2o57a1	282	Putative sarcosine dimethylglycine methyltransfera	99.19
d2frna1	260	Hypothetical protein PH0793 {Pyrococcus horikoshii	99.17
d2b78a2	317	Hypothetical protein SMu776, middle and C-terminal	99.14
d1jg1a_	215	Protein-L-isoaspartyl O-methyltransferase {Archaeo	99.13
d1g8sa_	230	Fibrillarin homologue {Archaeon Methanococcus jann	99.09
d2igta1	309	Putative methyltransferase Atu0340 {Agrobacterium	99.07
d1ve3a1	226	Hypothetical protein PH0226 {Archaeon Pyrococcus h	99.06
d2esra1	152	Putative methyltransferase SPy1538 {Streptococcus	99.05
d2fcaa1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil	99.02
d2b3ta1	274	N5-glutamine methyltransferase, HemK {Escherichia	99.0
d1vbfa_	224	Protein-L-isoaspartyl O-methyltransferase {Sulfolo	99.0
d2i6ga1	198	Putative methyltransferase TehB {Salmonella typhim	98.99
d2fpoa1	183	Methylase YhhF {Escherichia coli [TaxId: 562]}	98.99
d1r18a_	223	Protein-L-isoaspartyl O-methyltransferase {Fruit f	98.97
d2ex4a1	222	Adrenal gland protein AD-003 (C9orf32) {Human (Hom	98.95
d1yzha1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep	98.94
d1wzna1	251	Hypothetical methyltransferase PH1305 {Archaeon Py	98.94
d1kpga_	285	CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}	98.94
d1uwva2	358	rRNA (Uracil-5-)-methyltransferase RumA, catalytic	98.91
d1ws6a1	171	Methyltransferase TTHA0928 {Thermus thermophilus [	98.89
d1kpia_	291	CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}	98.89
d1ne2a_	197	Hypothetical protein Ta1320 {Archaeon Thermoplasma	98.88
d2fk8a1	280	Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri	98.88
d1y8ca_	246	Putative methyltransferase CAC2371 {Clostridium ac	98.87
d1ri5a_	252	mRNA cap (Guanine N-7) methyltransferase {Fungus (	98.87
d2fhpa1	182	Putative methylase EF2452 {Enterococcus faecalis [	98.86
d2nxca1	254	PrmA-like protein TTHA0656 (TT0836) {Thermus therm	98.86
d2gh1a1	281	Methyltransferase BC2162 {Bacillus cereus [TaxId:	98.84
d1wg8a2	182	TM0872, methyltransferase domain {Thermus thermoph	98.83
d1im8a_	225	Hypothetical protein HI0319 (YecO) {Haemophilus in	98.83
d2ifta1	183	Putative methylase HI0767 {Haemophilus influenzae	98.8
d1p91a_	268	rRNA methyltransferase RlmA {Escherichia coli [Tax	98.79
d1pjza_	201	Thiopurine S-methyltransferase {Pseudomonas syring	98.74
d2avna1	246	Hypothetical methyltransferase TM1389 {Thermotoga	98.68
d1xtpa_	254	Hypothetical protein Lmaj004091aaa (LmjF30.0810) {	98.68
d1zx0a1	229	Guanidinoacetate methyltransferase {Human (Homo sa	98.62
d2fyta1	311	Protein arginine N-methyltransferase 3, PRMT3 {Hum	98.59
d1nw3a_	328	Catalytic, N-terminal domain of histone methyltran	98.59
d2h00a1	250	Methyltransferase 10 domain containing protein MET	98.54
d1qama_	235	rRNA adenine dimethylase {Bacillus subtilis, Ermc'	98.54
d2cl5a1	214	Catechol O-methyltransferase, COMT {Rat (Rattus no	98.53
d1g6q1_	328	Arginine methyltransferase, HMT1 {Baker's yeast (S	98.53
d2bzga1	229	Thiopurine S-methyltransferase {Human (Homo sapien	98.52
d1vlma_	208	Possible histamine N-methyltransferase TM1293 {The	98.48
d1nv8a_	271	N5-glutamine methyltransferase, HemK {Thermotoga m	98.48
d1oria_	316	Protein arginine N-methyltransferase 1, PRMT1 {Rat	98.47
d1xvaa_	292	Glycine N-methyltransferase {Rat (Rattus norvegicu	98.44
d2p7ia1	225	Hypothetical protein ECA1738 {Erwinia carotovora [	98.43
d2f8la1	328	Hypothetical protein Lmo1582 {Listeria monocytogen	98.39
d1tw3a2	253	Carminomycin 4-O-methyltransferase {Streptomyces p	98.39
d2avda1	219	COMT domain-containing protein 1, COMTD1 {Human (H	98.34
d1susa1	227	Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicag	98.33
d1u2za_	406	Catalytic, N-terminal domain of histone methyltran	98.32
d2ih2a1	223	DNA methylase TaqI, N-terminal domain {Thermus aqu	98.26
d1yuba_	245	rRNA adenine dimethylase {Streptococcus pneumoniae	98.23
d1zq9a1	278	Probable dimethyladenosine transferase {Human (Hom	98.21
d1jsxa_	207	Glucose-inhibited division protein B (GidB) {Esche	98.15
d2oyra1	250	Hypothetical protein YhiQ {Shigella flexneri [TaxI	98.12
d1qzza2	256	Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu	98.09
d1jqea_	280	Histamine methyltransferase {Human (Homo sapiens)	98.07
d1ej0a_	180	RNA methyltransferase FtsJ {Escherichia coli [TaxI	97.97
d2a14a1	257	Indolethylamine N-methyltransferase, INMT {Human (	97.97
d2okca1	425	Type I restriction enzyme StySJI M protein {Bacter	97.96
d1qyra_	252	High level kasugamycin resistance protein KsgA {Es	97.92
d1xdza_	239	Glucose-inhibited division protein B (GidB) {Bacil	97.92
d2dula1	375	N(2),N(2)-dimethylguanosine tRNA methyltransferase	97.82
d2g72a1	263	Phenylethanolamine N-methyltransferase, PNMTase {H	97.51
d2ar0a1	524	M.EcoKI {Escherichia coli [TaxId: 562]}	97.31
d1i4wa_	322	Transcription factor sc-mtTFB {Baker's yeast (Sacc	97.14
d1uira_	312	Spermidine synthase {Thermus thermophilus [TaxId:	96.66
d1mjfa_	276	Putative spermidine synthetase PF0127 (SpeE) {Arch	96.52
d1kola2	195	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	96.46
d1dcta_	324	DNA methylase HaeIII {Haemophilus aegyptius [TaxId	96.44
d1inla_	295	Spermidine synthase {Thermotoga maritima [TaxId: 2	96.38
d1iy9a_	274	Spermidine synthase {Bacillus subtilis [TaxId: 142	96.24
d2c7pa1	327	DNA methylase HhaI {Haemophilus haemolyticus [TaxI	96.09
d2bm8a1	232	Cephalosporin hydroxylase CmcI {Streptomyces clavu	96.08
d1g55a_	343	DNMT2 {Human (Homo sapiens) [TaxId: 9606]}	95.92
d1o9ga_	249	rRNA methyltransferase AviRa {Streptomyces viridoc	95.78
d2o07a1	285	Spermidine synthase {Human (Homo sapiens) [TaxId:	95.54
d2b2ca1	312	Spermidine synthase {Caenorhabditis elegans [TaxId	95.28
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	95.18
d1d1ta2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	95.11
d1fp1d2	244	Chalcone O-methyltransferase {Alfalfa (Medicago sa	95.05
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	95.01
d1g60a_	256	Methyltransferase mboII {Moraxella bovis [TaxId: 4	95.0
d1cdoa2	175	Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI	94.97
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	94.95
d1eg2a_	279	m.RsrI N6 adenosine-specific DNA methyltransferase	94.83
d1p0fa2	174	Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:	94.76
d2p41a1	257	An RNA cap (nucleoside-2'-O-)-methyltransferase do	94.59
d1xj5a_	290	Spermidine synthase {Thale cress (Arabidopsis thal	94.58
d1booa_	320	m.PvuII N4 cytosine-specific DNA methyltransferase	94.12
d2py6a1	395	Methyltransferase FkbM {Methylobacillus flagellatu	94.08
d2jhfa2	176	Alcohol dehydrogenase {Horse (Equus caballus) [Tax	93.89
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	93.59
d1e3ia2	174	Alcohol dehydrogenase {Mouse (Mus musculus), class	93.53
d1jqba2	174	Bacterial secondary alcohol dehydrogenase {Clostri	93.33
d1af7a2	193	Chemotaxis receptor methyltransferase CheR, C-term	93.11
d1f8fa2	174	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	92.94
d1llua2	166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	92.15
d1fp2a2	244	Isoflavone O-methyltransferase {Alfalfa (Medicago	91.98
d2fzwa2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	91.97
d1h2ba2	172	Alcohol dehydrogenase {Archaeon Aeropyrum pernix [	90.19
d1rjwa2	168	Alcohol dehydrogenase {Bacillus stearothermophilus	89.83
d1jvba2	170	Alcohol dehydrogenase {Archaeon Sulfolobus solfata	89.24
d1yb5a2	174	Quinone oxidoreductase {Human (Homo sapiens) [TaxI	88.79
d1uufa2	168	Hypothetical protein YahK {Escherichia coli [TaxId	87.82
d1kyza2	243	Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra	87.46
d1qora2	179	Quinone oxidoreductase {Escherichia coli [TaxId: 5	87.11
d1wmaa1	275	Carbonyl reductase/20beta-hydroxysteroid dehydroge	86.19
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	82.67
d1y1pa1	342	Aldehyde reductase II {Sporobolomyces salmonicolor	82.33
d1xg5a_	257	Putative dehydrogenase ARPG836 (MGC4172) {Human (H	82.28
d1iz0a2	171	Quinone oxidoreductase {Thermus thermophilus [TaxI	81.86
d2c07a1	251	beta-keto acyl carrier protein reductase {Malaria	80.06

>d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: Hypothetical methyltransferase PH1374
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=100.00  E-value=7.5e-39  Score=297.14  Aligned_cols=178  Identities=26%  Similarity=0.352  Sum_probs=158.6

Q ss_pred             HHHHccCCCHHHHHHhhcCCCCCCCceEEEcCCCCCHHHHHHHHcc-cccccccCCCCCeEEeC-CCCCCCCCcccccce
Q 019802          145 LLVRNKVKSIEDLMALYQTPDVPKPRYVRVNTLKMDVDSAVLELGK-QFVVQKDDLVPDLLILP-PGCDLHVHPLIVNGC  222 (335)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~~p~~lRvN~~k~~~~~~~~~L~~-~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~g~  222 (335)
                      |+..+|. +.++++   ++++.++|+|+|||++|++.+++++.|++ |+.+++++++++++.+. ...++..+++|.+|+
T Consensus        22 ~~~~~Ge-e~~~l~---~a~~~~~p~~iRvN~~k~~~e~~~~~L~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G~   97 (313)
T d1ixka_          22 YFQLWGE-RAIRIA---EAMEKPLPRCFRVNTLKISVQDLVKRLNKKGFQFKRVPWAKEGFCLTREPFSITSTPEFLTGL   97 (313)
T ss_dssp             HHHHHTT-HHHHHH---HHTTSCCCCEEEECTTTSCHHHHHHHHHHTTCEEEEETTEEEEEEEEECSSCGGGSHHHHTTS
T ss_pred             HHHHhhH-HHHHHH---HHcCCCCCeEEEEcCCcCCHHHHHHHHHhCCCceEECCCCcchhhhccCCCccccCHhhhhce
Confidence            3344452 344444   45677999999999999999999999987 88899999999999886 445789999999999


Q ss_pred             EEecCchHHHHHHHcCCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCC
Q 019802          223 VFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFL  302 (335)
Q Consensus       223 ~~iQd~~s~l~~~~l~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~  302 (335)
                      +++||.+||+++.++++++|++|||+||||||||+|++++++++|.|+|+|+++.|++.+++|++++|+.|+.+.+.|+.
T Consensus        98 ~~vQD~aS~l~~~~l~~~~g~~vlD~CAapGgKt~~l~~~~~~~~~i~a~d~~~~r~~~l~~~~~r~~~~~i~~~~~d~~  177 (313)
T d1ixka_          98 IYIQEASSMYPPVALDPKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVLNVILFHSSSL  177 (313)
T ss_dssp             EEECCHHHHHHHHHHCCCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCCSEEEESSCGG
T ss_pred             EEEecccccchhhcccCCccceeeecccchhhhhHhhhhhcccccceeeeccCHHHHHHHHHHHHHHHhhcccccccccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             CCCCCCCCCceEEEEEEeccccccccc
Q 019802          303 NLDPKDPAYSEVSLIFCIFTWMIIMFH  329 (335)
Q Consensus       303 ~~~~~~~~fd~V~~IllD~~cs~~g~~  329 (335)
                      .++..+..||.   ||||+||||+|+.
T Consensus       178 ~~~~~~~~fD~---ILvDaPCSg~G~~  201 (313)
T d1ixka_         178 HIGELNVEFDK---ILLDAPCTGSGTI  201 (313)
T ss_dssp             GGGGGCCCEEE---EEEECCTTSTTTC
T ss_pred             ccccccccccE---EEEccccccCCce
Confidence            88766666765   9999999999984

>d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=1.9e-37  Score=284.16  Aligned_cols=178  Identities=20%  Similarity=0.255  Sum_probs=153.7

Q ss_pred             HHHHHccCCCHHHHHHhhcCCCCCCCceEEEcCCCCCHHHHHHHHcc-cccccccCCCCCeEEeCCCCCCCCCcccccce
Q 019802          144 QLLVRNKVKSIEDLMALYQTPDVPKPRYVRVNTLKMDVDSAVLELGK-QFVVQKDDLVPDLLILPPGCDLHVHPLIVNGC  222 (335)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~lRvN~~k~~~~~~~~~L~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~  222 (335)
                      +|...++. +.+++++   +++.+||+|+|||++|++.+++.+.|++ ++..++.++.|+++.+..+..+..++.|.+|+
T Consensus         8 ~~~~~~ge-e~~~l~~---a~~~~~p~~lRvN~~k~s~~~~~~~L~~~gi~~~~~~~~p~~l~l~~~~~l~~~~~~~~G~   83 (284)
T d1sqga2           8 RLQKAYPE-QWQSIVE---ANNQRPPMWLRINRTHHSRDSWLALLDEAGMKGFPHADYPDAVRLETPAPVHALPGFEDGW   83 (284)
T ss_dssp             HHHHHCTT-THHHHHH---HHTSCCCEEEEECTTTCCHHHHHHHHHHTTCCEECCTTCTTEEEESSCCCGGGSTTGGGTS
T ss_pred             HHHHHCHH-HHHHHHH---HCCCCCCeEEEECCCCCCHHHHHHHHHhcCCceeecCCCCccceeccccchhhChhhhccE
Confidence            44455553 3555554   4567999999999999999999999987 78888888999999999888899999999999


Q ss_pred             EEecCchHHHHHHHcCCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCC
Q 019802          223 VFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFL  302 (335)
Q Consensus       223 ~~iQd~~s~l~~~~l~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~  302 (335)
                      +++||.+||+++.++++++|++|||+||||||||+||++++.+ |+|+|+|+++.|++.++++++|+|++++.+...|..
T Consensus        84 ~~vQD~sS~l~~~~L~~~~g~~vLD~CAaPGgKt~~la~l~~~-~~i~a~d~~~~R~~~l~~~~~r~g~~~~~~~~~~~~  162 (284)
T d1sqga2          84 VTVQDASAQGCMTWLAPQNGEHILDLCAAPGGKTTHILEVAPE-AQVVAVDIDEQRLSRVYDNLKRLGMKATVKQGDGRY  162 (284)
T ss_dssp             EEECCHHHHTHHHHHCCCTTCEEEEESCTTCHHHHHHHHHCTT-CEEEEEESSTTTHHHHHHHHHHTTCCCEEEECCTTC
T ss_pred             EEeccccccccccccCccccceeEeccCccccchhhhhhhhhh-hhhhhhhcchhhhhhHhhhhhcccccceeeeccccc
Confidence            9999999999999999999999999999999999999998765 999999999999999999999999998877777665


Q ss_pred             CCCC-CCCCCceEEEEEEeccccccccc
Q 019802          303 NLDP-KDPAYSEVSLIFCIFTWMIIMFH  329 (335)
Q Consensus       303 ~~~~-~~~~fd~V~~IllD~~cs~~g~~  329 (335)
                      .... ....||   .||||+||||+|+.
T Consensus       163 ~~~~~~~~~fd---~IL~DaPCSg~G~~  187 (284)
T d1sqga2         163 PSQWCGEQQFD---RILLDAPCSATGVI  187 (284)
T ss_dssp             THHHHTTCCEE---EEEEECCCCCGGGT
T ss_pred             cchhccccccc---EEEEeccccccCcc
Confidence            4332 223455   59999999999985

>d2b9ea1 c.66.1.38 (A:133-425) NOL1R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: NOL1R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.3e-36  Score=279.67  Aligned_cols=162  Identities=42%  Similarity=0.645  Sum_probs=146.2

Q ss_pred             CCceEEEcCCCCCHHHHHHHHcc-ccc------------------ccccCCCCCeEEeCCCCCCCCCcccccceEEecCc
Q 019802          168 KPRYVRVNTLKMDVDSAVLELGK-QFV------------------VQKDDLVPDLLILPPGCDLHVHPLIVNGCVFLQGK  228 (335)
Q Consensus       168 ~p~~lRvN~~k~~~~~~~~~L~~-~~~------------------~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~iQd~  228 (335)
                      .|+|+||||+|++.+++.+.|++ |+.                  +..++++|+++++++..++..+++|++|+|++||.
T Consensus         2 lP~~~RVNtlk~~~ee~~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~l~~~~~~~~G~~~~QD~   81 (293)
T d2b9ea1           2 LPRFVRVNTLKTCSDDVVDYFKRQGFSYQGRASSLDDLRALKGKHFLLDPLMPELLVFPAQTDLHEHPLYRAGHLILQDR   81 (293)
T ss_dssp             CCEEEEECTTTCCHHHHHHHHHHTTCEEEEECSSHHHHHTCCTTEEEECSSSTTEEEECTTCCCTTSHHHHTTSEEECCT
T ss_pred             CCeEEEECCCcCCHHHHHHHHHHcCCccccccccchhhhhcccccccccCCCCCeEEeCCCCCcccChHHhCcEEEEcCC
Confidence            59999999999999999999976 432                  23457789999999888999999999999999999


Q ss_pred             hHHHHHHHcCCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCC
Q 019802          229 ASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKD  308 (335)
Q Consensus       229 ~s~l~~~~l~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~~~~  308 (335)
                      +||++++++++++|++|||+||||||||+||++++++.++|+|+|++++|++.+++|++++|+.|+.+...|+..+.+.+
T Consensus        82 sS~l~~~~L~~~~g~~vLD~cAapGgKt~~la~l~~~~~~i~a~d~~~~R~~~l~~~l~r~g~~~~~~~~~d~~~~~~~~  161 (293)
T d2b9ea1          82 ASCLPAMLLDPPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGVSCCELAEEDFLAVSPSD  161 (293)
T ss_dssp             GGGHHHHHHCCCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGSCTTC
T ss_pred             cccccccccCCCccceEEecccchhhHHHHHHHHhcCCceEeeecCCHHHHHHHHHHHHhcCccceeeeehhhhhhcccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999988776


Q ss_pred             CCCceEEEEEEeccccccccc
Q 019802          309 PAYSEVSLIFCIFTWMIIMFH  329 (335)
Q Consensus       309 ~~fd~V~~IllD~~cs~~g~~  329 (335)
                      ..+..+|.||+|+||||+|+.
T Consensus       162 ~~~~~fD~VL~DaPCSg~G~~  182 (293)
T d2b9ea1         162 PRYHEVHYILLDPSCSGSGMP  182 (293)
T ss_dssp             GGGTTEEEEEECCCCCC----
T ss_pred             cccceeeEEeecCcccchhhh
Confidence            666777889999999999983

>d1sqga1 a.79.1.3 (A:5-144) Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), N-terminal domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: NusB-like
superfamily: NusB-like
family: RmsB N-terminal domain-like
domain: Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.55  E-value=5.4e-15  Score=119.98  Aligned_cols=123  Identities=16%  Similarity=0.173  Sum_probs=91.6

Q ss_pred             HHHHHHHHHHHHHHccc-hhhhhhhhhhhhccCCCccCHHHHHHHHHHHHhchHHHHHHHhhcccccccccc----hHHH
Q 019802           33 FARREAAKVLRLVLRGD-ARRRAVGSIKSLVYSPSVKNKKATYALVCQTLKHLSIIKQVLDSASILNSKWKR----QEEL  107 (335)
Q Consensus        33 ~aR~~A~~iL~~v~~~~-~~~~~l~~~~~~~~~~~~~dr~l~~~LV~gvlR~~~~LD~il~~~~ll~~~~~~----~~~l  107 (335)
                      ++|..|+++|.+|+.++ +..+++...   ...++.+|++|+++|||||+||+..||++|.+  +++++++.    .+.+
T Consensus         2 ~~R~~A~q~L~~v~~~g~~l~~~l~~~---~~~l~~~dr~~~~~lv~gvlr~~~~ld~~i~~--~l~~~~~~~~~~~~~i   76 (140)
T d1sqga1           2 NLRSMAAQAVEQVVEQGQSLSNILPPL---QQKVSDKDKALLQELCFGVLRTLSQLDWLINK--LMARPMTGKQRTVHYL   76 (140)
T ss_dssp             CHHHHHHHHHHHHHHHCCCHHHHHHHH---HTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHH--HCSSCCCGGGHHHHHH
T ss_pred             CHHHHHHHHHHHHHHcCCCHHHHHHHH---HHhCCHHHHHHHHHHHHHHHHhHHHHHHHHHH--HhhcccchhhHHHHHH
Confidence            47999999999997644 444454432   23456789999999999999999999999998  46655432    3689


Q ss_pred             HHHHHHHHHhcCCCCchhHHHHHHHHhhh---hHHHHHHHHHHHccCCCHHHHHHhh
Q 019802          108 VYILTYDILFGQEISLVGDAEKFLMLHKG---AIQLALAQLLVRNKVKSIEDLMALY  161 (335)
Q Consensus       108 Lrl~lyqllf~~~iP~~a~v~~~v~~~k~---~~~~~l~~~~~~~~~~~~~~~~~~~  161 (335)
                      |++|+||++|++ +|+++.+++.|+..|.   .-..+|.+.+.|......+++.+..
T Consensus        77 Lr~a~~el~~~~-~p~~avvneaV~lak~~~~~~~~~fVNaVLr~~~r~~~~~~~~~  132 (140)
T d1sqga1          77 IMVGLYQLLYTR-IPPHAALAETVEGAIAIKRPQLKGLINGVLRQFQRQQEELLAEF  132 (140)
T ss_dssp             HHHHHHHHHHCC-SCHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCC-CCCccchHHHHHHHHHhCCCcccchhHHHHHHHHhCcHHHHHhh
Confidence            999999999986 9999999999877643   1224566666666555556665543

>d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.47  E-value=3.9e-13  Score=116.04  Aligned_cols=85  Identities=24%  Similarity=0.207  Sum_probs=76.6

Q ss_pred             cCCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCceEEE
Q 019802          237 LAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVSL  316 (335)
Q Consensus       237 l~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~~~~~~fd~V~~  316 (335)
                      +.++||++|||+|||+|+.+.|+++.++ +++|+|+|+|+.|++.+++++++.+  |+.++.+|+..++.....++.|+.
T Consensus        52 l~lkpg~~VLDlGcG~G~~~~~la~~v~-~g~V~gvDis~~~i~~a~~~a~~~~--ni~~i~~d~~~~~~~~~~~~~vd~  128 (209)
T d1nt2a_          52 LKLRGDERVLYLGAASGTTVSHLADIVD-EGIIYAVEYSAKPFEKLLELVRERN--NIIPLLFDASKPWKYSGIVEKVDL  128 (209)
T ss_dssp             CCCCSSCEEEEETCTTSHHHHHHHHHTT-TSEEEEECCCHHHHHHHHHHHHHCS--SEEEECSCTTCGGGTTTTCCCEEE
T ss_pred             CCCCCCCEEEEeCCcCCHHHHHHHHhcc-CCeEEEEeCCHHHHHHHHHHhhccC--CceEEEeeccCccccccccceEEE
Confidence            5689999999999999999999999985 5799999999999999999998865  899999999998877778899999


Q ss_pred             EEEecccc
Q 019802          317 IFCIFTWM  324 (335)
Q Consensus       317 IllD~~cs  324 (335)
                      |+.|+++-
T Consensus       129 v~~~~~~~  136 (209)
T d1nt2a_         129 IYQDIAQK  136 (209)
T ss_dssp             EEECCCST
T ss_pred             EEecccCh
Confidence            99887654

>d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Thermotoga maritima [TaxId: 2336]

Probab=99.45  E-value=2.7e-13  Score=117.40  Aligned_cols=87  Identities=20%  Similarity=0.278  Sum_probs=78.2

Q ss_pred             HHHHcCCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCc
Q 019802          233 VAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYS  312 (335)
Q Consensus       233 ~~~~l~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~~~~~~fd  312 (335)
                      +.+.+++++|++|||+|||+|..|..||+.+++.++|+++|+++.+++.++++++..++.|+.++++|+.+..+.++.||
T Consensus        67 ~l~~l~l~~g~~VLdiG~GtG~~s~~la~~~~~~g~V~~id~~~~~~~~a~~~~~~~~~~n~~~~~~d~~~~~~~~~~fD  146 (213)
T d1dl5a1          67 FMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIENVIFVCGDGYYGVPEFSPYD  146 (213)
T ss_dssp             HHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGCCEE
T ss_pred             HHHhhhccccceEEEecCccchhHHHHHHHhCCCCcEEEeecchhhHHHhhhhHhhhcccccccccCchHHccccccchh
Confidence            44678899999999999999999999999998889999999999999999999999999999999999988777667787


Q ss_pred             eEEEEEEecc
Q 019802          313 EVSLIFCIFT  322 (335)
Q Consensus       313 ~V~~IllD~~  322 (335)
                      .   |++++.
T Consensus       147 ~---I~~~~~  153 (213)
T d1dl5a1         147 V---IFVTVG  153 (213)
T ss_dssp             E---EEECSB
T ss_pred             h---hhhhcc
Confidence            5   666543

>d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Probable methyltransferase Rv2118c
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.44  E-value=2.6e-13  Score=121.00  Aligned_cols=98  Identities=14%  Similarity=0.169  Sum_probs=85.8

Q ss_pred             EecCchHHHHHHHcCCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhC---CCcEEEEecc
Q 019802          224 FLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSG---AANIEVLHGD  300 (335)
Q Consensus       224 ~iQd~~s~l~~~~l~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g---~~ni~~~~~D  300 (335)
                      .+..+.+.++...++++||++|||+|||+|..|.+||..++++|+|+++|+++++++.+++|+++++   ..|+.+.++|
T Consensus        79 iiypkD~s~Ii~~l~i~PG~~VLE~G~GsG~lt~~La~~vgp~G~V~~~d~~~~~~~~Ar~n~~~~~~~~~~nv~~~~~d  158 (264)
T d1i9ga_          79 VIYPKDAAQIVHEGDIFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSD  158 (264)
T ss_dssp             CCCHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSC
T ss_pred             ccchHHHHHHHHHhCCCCCCEEEecCcCCcHHHHHHHHhhCCCcEEEEecCCHHHHHHHHHhhhhhccCCCceEEEEecc
Confidence            3445556678889999999999999999999999999999999999999999999999999999863   4789999999


Q ss_pred             CCCCCCCCCCCceEEEEEEecccc
Q 019802          301 FLNLDPKDPAYSEVSLIFCIFTWM  324 (335)
Q Consensus       301 ~~~~~~~~~~fd~V~~IllD~~cs  324 (335)
                      +.+.+..+.+||.   |++|.|.=
T Consensus       159 ~~~~~~~~~~fDa---V~ldlp~P  179 (264)
T d1i9ga_         159 LADSELPDGSVDR---AVLDMLAP  179 (264)
T ss_dssp             GGGCCCCTTCEEE---EEEESSCG
T ss_pred             cccccccCCCcce---EEEecCCH
Confidence            9988777777775   78998753

>d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.41  E-value=3.1e-13  Score=118.06  Aligned_cols=88  Identities=24%  Similarity=0.274  Sum_probs=76.0

Q ss_pred             cCCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCceEEE
Q 019802          237 LAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVSL  316 (335)
Q Consensus       237 l~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~~~~~~fd~V~~  316 (335)
                      +.++||++|||+|||+|..+.|+|+.++++|+|+|+|+++.+++.+++++++.  .|+..+..|+..........+.|+.
T Consensus        69 l~i~pG~~VLDlGaGsG~~t~~la~~VG~~G~V~aVD~s~~~l~~a~~~a~~~--~~~~~i~~d~~~~~~~~~~~~~vD~  146 (227)
T d1g8aa_          69 FPIKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEER--RNIVPILGDATKPEEYRALVPKVDV  146 (227)
T ss_dssp             CCCCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSC--TTEEEEECCTTCGGGGTTTCCCEEE
T ss_pred             cccCCCCEEEEeccCCCHHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHHhc--CCceEEEEECCCcccccccccceEE
Confidence            34789999999999999999999999999999999999999999999998765  4788899999876654444567889


Q ss_pred             EEEecccccc
Q 019802          317 IFCIFTWMII  326 (335)
Q Consensus       317 IllD~~cs~~  326 (335)
                      |++|++|...
T Consensus       147 i~~d~~~~~~  156 (227)
T d1g8aa_         147 IFEDVAQPTQ  156 (227)
T ss_dssp             EEECCCSTTH
T ss_pred             EEEEccccch
Confidence            9999998753

>d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein YcgJ
species: Bacillus subtilis [TaxId: 1423]

Probab=99.41  E-value=5.4e-13  Score=116.61  Aligned_cols=84  Identities=14%  Similarity=0.242  Sum_probs=76.5

Q ss_pred             HHHHHHHcCCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCC
Q 019802          230 SSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDP  309 (335)
Q Consensus       230 s~l~~~~l~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~~~~~  309 (335)
                      ..++...++++||++|||+|||+|..+.++++..   ++|+++|+|+.+++.+++++...|+.|+.++++|+.+++++++
T Consensus         5 ~~~l~~~~~~~~~~rILDiGcGtG~~~~~la~~~---~~v~gvD~S~~~l~~A~~~~~~~~~~~~~~~~~d~~~~~~~~~   81 (234)
T d1xxla_           5 LGLMIKTAECRAEHRVLDIGAGAGHTALAFSPYV---QECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAESLPFPDD   81 (234)
T ss_dssp             HHHHHHHHTCCTTCEEEEESCTTSHHHHHHGGGS---SEEEEEESCHHHHHHHHHHHHHHTCCSEEEEECBTTBCCSCTT
T ss_pred             HHHHHHHhCCCCCCEEEEeCCcCcHHHHHHHHhC---CeEEEEeCChhhhhhhhhhhccccccccccccccccccccccc
Confidence            4567788999999999999999999999999873   5899999999999999999999999999999999999998888


Q ss_pred             CCceEEE
Q 019802          310 AYSEVSL  316 (335)
Q Consensus       310 ~fd~V~~  316 (335)
                      +||.|.+
T Consensus        82 ~fD~v~~   88 (234)
T d1xxla_          82 SFDIITC   88 (234)
T ss_dssp             CEEEEEE
T ss_pred             ccceeee
Confidence            9997544

>d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein TTHA1280, middle and C-terminal domains
species: Thermus thermophilus [TaxId: 274]

Probab=99.39  E-value=9.8e-14  Score=127.40  Aligned_cols=105  Identities=21%  Similarity=0.226  Sum_probs=86.2

Q ss_pred             CcccccceEEecCchHHHHHHHcCCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcE
Q 019802          215 HPLIVNGCVFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANI  294 (335)
Q Consensus       215 ~~~~~~g~~~iQd~~s~l~~~~l~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni  294 (335)
                      ..+++.|.|.-|.....+    +...+|.+|||+|||+|+++.+++..   ..+|+++|+|+.+++.+++|+++.|++++
T Consensus       123 ~~~~~tG~flDqr~~r~~----~~~~~g~rVLDl~~gtG~~s~~~a~g---~~~V~~vD~s~~al~~a~~n~~~ngl~~~  195 (318)
T d1wxxa2         123 RAGQKTGAYLDQRENRLY----MERFRGERALDVFSYAGGFALHLALG---FREVVAVDSSAEALRRAEENARLNGLGNV  195 (318)
T ss_dssp             STTSCCCCCGGGHHHHHH----GGGCCEEEEEEETCTTTHHHHHHHHH---EEEEEEEESCHHHHHHHHHHHHHTTCTTE
T ss_pred             hhccccccchhhhhhHHH----HHHhCCCeeeccCCCCcHHHHHHHhc---CCcEEeecchHHHHHHHHHHHHHcCCCCc
Confidence            357888999888876543    23347999999999999999998753   46899999999999999999999999999


Q ss_pred             EEEeccCCCCC----CCCCCCceEEEEEEeccccccccc
Q 019802          295 EVLHGDFLNLD----PKDPAYSEVSLIFCIFTWMIIMFH  329 (335)
Q Consensus       295 ~~~~~D~~~~~----~~~~~fd~V~~IllD~~cs~~g~~  329 (335)
                      +++++|+.++.    .....||   .|++||||++.+..
T Consensus       196 ~~i~~d~~~~~~~~~~~~~~fD---~Vi~DpP~~~~~~~  231 (318)
T d1wxxa2         196 RVLEANAFDLLRRLEKEGERFD---LVVLDPPAFAKGKK  231 (318)
T ss_dssp             EEEESCHHHHHHHHHHTTCCEE---EEEECCCCSCCSTT
T ss_pred             ceeeccHHHHhhhhHhhhcCCC---EEEEcCCccccchH
Confidence            99999987742    2344566   59999999987753

>d1ey1a_ a.79.1.1 (A:) Antitermination factor NusB {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: NusB-like
superfamily: NusB-like
family: Antitermination factor NusB
domain: Antitermination factor NusB
species: Escherichia coli [TaxId: 562]

Probab=99.38  E-value=1.8e-12  Score=104.54  Aligned_cols=100  Identities=10%  Similarity=0.038  Sum_probs=78.8

Q ss_pred             HHHHHHHHHHHHHccch-hhhhhhhhhhhccCCCccCHHHHHHHHHHHHhchHHHHHHHhhccccccccc----chHHHH
Q 019802           34 ARREAAKVLRLVLRGDA-RRRAVGSIKSLVYSPSVKNKKATYALVCQTLKHLSIIKQVLDSASILNSKWK----RQEELV  108 (335)
Q Consensus        34 aR~~A~~iL~~v~~~~~-~~~~l~~~~~~~~~~~~~dr~l~~~LV~gvlR~~~~LD~il~~~~ll~~~~~----~~~~lL  108 (335)
                      +|..|+++|++++..+. ....+..+.. ...++..|+.|+++||+||++++..||.+|.+  +++.+..    ..+.+|
T Consensus         9 aR~~a~q~Ly~~~~~~~~~~~~~~~~~~-~~~~~~~d~~~~~~l~~gv~~~~~~id~~I~~--~l~~~~~r~~~~~~~IL   85 (139)
T d1ey1a_           9 ARECAVQALYSWQLSQNDIADVEYQFLA-EQDVKDVDVLYFRELLAGVATNTAYLDGLMKP--YLSRLLEELGQVEKAVL   85 (139)
T ss_dssp             HHHHHHHHHHHHHHHCCCSHHHHHHHHH-TTTSSSCCCHHHHHHHHHHHHHHHHHHHHHTT--CCCSCTTTSCHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCCCHHHHHHHHHH-hcccchhhHHHHHHHHHHHHHhHHHHHHHHHH--HHHhhHHhcChHHHHHH
Confidence            89999999999976443 3333333221 13456789999999999999999999999998  4554433    247899


Q ss_pred             HHHHHHHHhcCCCCchhHHHHHHHHhhh
Q 019802          109 YILTYDILFGQEISLVGDAEKFLMLHKG  136 (335)
Q Consensus       109 rl~lyqllf~~~iP~~a~v~~~v~~~k~  136 (335)
                      ++|+|||+|++.+|.++.++++|+..|.
T Consensus        86 r~a~~El~~~~~~p~~viInE~Velak~  113 (139)
T d1ey1a_          86 RIALYELSKRSDVPYKVAINEAIELAKS  113 (139)
T ss_dssp             HHHHHHHHSCSSCCSHHHHHHHHHHTTT
T ss_pred             HHHHHHHHHccCCCceehHHHHHHHHHH
Confidence            9999999999889999999999988653

>d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: MraW-like putative methyltransferases
domain: TM0872, methyltransferase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=99.37  E-value=3.7e-13  Score=114.56  Aligned_cols=91  Identities=14%  Similarity=0.168  Sum_probs=79.0

Q ss_pred             HHHHcCCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCC--CCC
Q 019802          233 VAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPK--DPA  310 (335)
Q Consensus       233 ~~~~l~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~~~--~~~  310 (335)
                      +...+.+++|+.|||+|||+||.|.++++.++ +++|+|+|.++.+++.+++++++++- ++.++++++.++...  ...
T Consensus        15 vi~~l~~~~~~~~lD~t~G~Gghs~~il~~~~-~~~vi~~D~d~~~l~~a~~~l~~~~~-r~~~~~~~f~~~~~~~~~~~   92 (192)
T d1m6ya2          15 VIEFLKPEDEKIILDCTVGEGGHSRAILEHCP-GCRIIGIDVDSEVLRIAEEKLKEFSD-RVSLFKVSYREADFLLKTLG   92 (192)
T ss_dssp             HHHHHCCCTTCEEEETTCTTSHHHHHHHHHCT-TCEEEEEESCHHHHHHHHHHTGGGTT-TEEEEECCGGGHHHHHHHTT
T ss_pred             HHHhhCCCCCCEEEEecCCCcHHHHHHHhcCC-CCeEEEeechHHHHHHHHHhhccccc-cccchhHHHhhHHHHHHHcC
Confidence            45678999999999999999999999999985 59999999999999999999998874 699999999886532  223


Q ss_pred             CceEEEEEEeccccc
Q 019802          311 YSEVSLIFCIFTWMI  325 (335)
Q Consensus       311 fd~V~~IllD~~cs~  325 (335)
                      ++.|++|++|++||+
T Consensus        93 ~~~vdgIl~DlGvSs  107 (192)
T d1m6ya2          93 IEKVDGILMDLGVST  107 (192)
T ss_dssp             CSCEEEEEEECSCCH
T ss_pred             CCCcceeeeccchhH
Confidence            567889999999986

>d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein Ta0852
species: Thermoplasma acidophilum [TaxId: 2303]

Probab=99.35  E-value=1.6e-12  Score=115.06  Aligned_cols=89  Identities=16%  Similarity=0.307  Sum_probs=74.8

Q ss_pred             HHHHHcCCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHh-CCCcEEEEeccCCCCCCCCCC
Q 019802          232 MVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLS-GAANIEVLHGDFLNLDPKDPA  310 (335)
Q Consensus       232 l~~~~l~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~-g~~ni~~~~~D~~~~~~~~~~  310 (335)
                      ++...++++||++|||+|||+|+.|..||..+++.|+|+++|+++.+++.+++|+++. +..|+++.++|+.+..+ +..
T Consensus        76 ~Ii~~l~i~pG~rVLEiG~GsG~lt~~la~~v~~~g~V~~vD~~e~~~~~A~~n~~~~~~~~nv~~~~~Di~~~~~-~~~  154 (250)
T d1yb2a1          76 YIIMRCGLRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIADFIS-DQM  154 (250)
T ss_dssp             -----CCCCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTTCCC-SCC
T ss_pred             HHHHHcCCCCcCEEEEeeeeCcHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhcCCCceEEEEeeeecccc-cce
Confidence            4456789999999999999999999999999998999999999999999999999986 56889999999988643 445


Q ss_pred             CceEEEEEEecccc
Q 019802          311 YSEVSLIFCIFTWM  324 (335)
Q Consensus       311 fd~V~~IllD~~cs  324 (335)
                      ||   .|++|.|..
T Consensus       155 fD---~V~ld~p~p  165 (250)
T d1yb2a1         155 YD---AVIADIPDP  165 (250)
T ss_dssp             EE---EEEECCSCG
T ss_pred             ee---eeeecCCch
Confidence            65   588998764

>d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Precorrin-6Y methyltransferase (CbiT)
domain: Precorrin-6Y methyltransferase (CbiT)
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.33  E-value=1.3e-12  Score=110.54  Aligned_cols=87  Identities=17%  Similarity=0.151  Sum_probs=73.5

Q ss_pred             chHHHHHHHcCCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCC-CcEEEEeccCCCCCC
Q 019802          228 KASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGA-ANIEVLHGDFLNLDP  306 (335)
Q Consensus       228 ~~s~l~~~~l~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~-~ni~~~~~D~~~~~~  306 (335)
                      .-++++. .+.+.+|++|||+|||+|..|.++|..   .++|+++|+++.+++.+++|+++.|+ +||+++++|+.+...
T Consensus        21 ir~~il~-~l~~~~g~~VLDiGcGsG~~s~~lA~~---~~~V~avD~~~~~l~~a~~n~~~~gl~~~v~~~~gda~~~~~   96 (186)
T d1l3ia_          21 VRCLIMC-LAEPGKNDVAVDVGCGTGGVTLELAGR---VRRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPEALC   96 (186)
T ss_dssp             HHHHHHH-HHCCCTTCEEEEESCTTSHHHHHHHTT---SSEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHHHHT
T ss_pred             HHHHHHH-hcCCCCCCEEEEEECCeEccccccccc---ceEEEEecCCHHHHHHHHHHHHHcCCCcceEEEECchhhccc
Confidence            3344444 589999999999999999999998865   46899999999999999999999999 589999999988777


Q ss_pred             CCCCCceEEEEEEec
Q 019802          307 KDPAYSEVSLIFCIF  321 (335)
Q Consensus       307 ~~~~fd~V~~IllD~  321 (335)
                      ....||.   |+++.
T Consensus        97 ~~~~~D~---v~~~~  108 (186)
T d1l3ia_          97 KIPDIDI---AVVGG  108 (186)
T ss_dssp             TSCCEEE---EEESC
T ss_pred             ccCCcCE---EEEeC
Confidence            6667765   66654

>d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein TM0748
species: Thermotoga maritima [TaxId: 2336]

Probab=99.30  E-value=6e-12  Score=112.34  Aligned_cols=100  Identities=20%  Similarity=0.193  Sum_probs=82.5

Q ss_pred             ceEEecCchHHHHHHHcCCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCC-CcEEEEec
Q 019802          221 GCVFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGA-ANIEVLHG  299 (335)
Q Consensus       221 g~~~iQd~~s~l~~~~l~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~-~ni~~~~~  299 (335)
                      +--.+..+.+.+++..++++||++|||+|||+|+.|.+||..+++.|+|+++|+++.+++.+++|+++.|+ .++.+...
T Consensus        83 ~~qiiypkd~~~Ii~~l~i~pG~~VLDiG~GsG~lt~~lA~~~~~~G~V~~vD~~~~~~~~A~~~~~~~g~~~~v~~~~~  162 (266)
T d1o54a_          83 RTQIVYPKDSSFIAMMLDVKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVR  162 (266)
T ss_dssp             -CCCCCHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECC
T ss_pred             CccccchHHHHHHHHhhCCCCCCEEEECCCCCCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccccCcEEEec
Confidence            33344556677888999999999999999999999999999999899999999999999999999999998 56888888


Q ss_pred             cCCCCCCCCCCCceEEEEEEecccc
Q 019802          300 DFLNLDPKDPAYSEVSLIFCIFTWM  324 (335)
Q Consensus       300 D~~~~~~~~~~fd~V~~IllD~~cs  324 (335)
                      |..... ....   ++.|++|.|.-
T Consensus       163 d~~~~~-~~~~---~D~V~~d~p~p  183 (266)
T d1o54a_         163 DISEGF-DEKD---VDALFLDVPDP  183 (266)
T ss_dssp             CGGGCC-SCCS---EEEEEECCSCG
T ss_pred             cccccc-cccc---eeeeEecCCCH
Confidence            874432 2223   55688998753

>d1tzva_ a.79.1.1 (A:) Antitermination factor NusB {Thermotoga maritima [TaxId: 2336]}

class: All alpha proteins
fold: NusB-like
superfamily: NusB-like
family: Antitermination factor NusB
domain: Antitermination factor NusB
species: Thermotoga maritima [TaxId: 2336]

Probab=99.30  E-value=9.2e-12  Score=100.53  Aligned_cols=112  Identities=15%  Similarity=0.171  Sum_probs=80.8

Q ss_pred             HHHHHHHHHHHHHccc-hhhhh-hhhhhhhccCCCccCHHHHHHHHHHHHhchHHHHHHHhhcccccc-ccc----chHH
Q 019802           34 ARREAAKVLRLVLRGD-ARRRA-VGSIKSLVYSPSVKNKKATYALVCQTLKHLSIIKQVLDSASILNS-KWK----RQEE  106 (335)
Q Consensus        34 aR~~A~~iL~~v~~~~-~~~~~-l~~~~~~~~~~~~~dr~l~~~LV~gvlR~~~~LD~il~~~~ll~~-~~~----~~~~  106 (335)
                      +|..|+++|+++..++ ...+. ...+  .....+.+|++|+++||+||++++..||++|.+  +++. +..    ..+.
T Consensus         8 aR~~a~q~Ly~~~~~~~~~~~~~~~~~--~~~~~~~~d~~~~~~lv~g~~~~~~~id~~I~~--~~~~~~~~rl~~~~~~   83 (141)
T d1tzva_           8 MRLAVFKALFQHEFRRDEDLEQILEEI--LDETYDKKAKEDARRYIRGIKENLSMIDDLISR--YLEKWSLNRLSVVDRN   83 (141)
T ss_dssp             HHHHHHHHHHHHTTCTTSCHHHHHHHH--CCTTSCHHHHHHHHHHHHHHHHTHHHHHHHHHT--TCSSSCGGGSCHHHHH
T ss_pred             HHHHHHHHHHHHHhcCCccHHHHHHHH--HHhccchhHHHHHHHHHHHHHHhHHHHHHHHHH--hcccCChHHHHHHHHH
Confidence            8999999999986543 22222 1111  123455689999999999999999999999997  3332 322    2368


Q ss_pred             HHHHHHHHHHhcCCCCchhHHHHHHHHhhh---hHHHHHHHHHHHc
Q 019802          107 LVYILTYDILFGQEISLVGDAEKFLMLHKG---AIQLALAQLLVRN  149 (335)
Q Consensus       107 lLrl~lyqllf~~~iP~~a~v~~~v~~~k~---~~~~~l~~~~~~~  149 (335)
                      +|++|+||++|+..+|.+++++++|+..|.   .-..+|.+.+++.
T Consensus        84 iLr~a~~El~~~~~~p~~v~InEaVelak~~~~~~~~~fVNaVL~~  129 (141)
T d1tzva_          84 VLRLATYELLFEKDIPIEVTIDEAIEIAKRYGTENSGKFVNGILDR  129 (141)
T ss_dssp             HHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhccccchhHHHHHHHHHHHHhCCCcccchHHHHHHH
Confidence            999999999999889999999999987653   2223455555544

>d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein FLJ20628
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.29  E-value=7.5e-12  Score=114.64  Aligned_cols=93  Identities=19%  Similarity=0.307  Sum_probs=77.0

Q ss_pred             chHHHHHHHcCCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhC-----------CCcEEE
Q 019802          228 KASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSG-----------AANIEV  296 (335)
Q Consensus       228 ~~s~l~~~~l~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g-----------~~ni~~  296 (335)
                      +.+.++...++++||++|||+|||+|+.|.+||..++++|+|+++|+++.+++.+++|+++.+           ..|+.+
T Consensus        85 kD~~~Il~~l~i~pG~rVLE~GtGsG~lt~~LAr~vg~~G~V~t~E~~~~~~~~A~~n~~~~~~~~~~~~~~~~~~nv~~  164 (324)
T d2b25a1          85 KDINMILSMMDINPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDF  164 (324)
T ss_dssp             HHHHHHHHHHTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEE
T ss_pred             ccHHHHHHHhCCCCCCEEEEecccccHHHHHHHHHhCCCcEEEEecCCHHHHHHHHHHHHHhhhhhhhhhhhccccceeE
Confidence            345567778999999999999999999999999999999999999999999999999999864           257999


Q ss_pred             EeccCCCCCCC--CCCCceEEEEEEeccc
Q 019802          297 LHGDFLNLDPK--DPAYSEVSLIFCIFTW  323 (335)
Q Consensus       297 ~~~D~~~~~~~--~~~fd~V~~IllD~~c  323 (335)
                      .++|+......  +..|   |+|++|.|.
T Consensus       165 ~~~di~~~~~~~~~~~f---D~V~LD~p~  190 (324)
T d2b25a1         165 IHKDISGATEDIKSLTF---DAVALDMLN  190 (324)
T ss_dssp             EESCTTCCC-------E---EEEEECSSS
T ss_pred             EecchhhcccccCCCCc---ceEeecCcC
Confidence            99999876532  3344   568999764

>d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein BH2331
species: Bacillus halodurans [TaxId: 86665]

Probab=99.29  E-value=7e-12  Score=108.66  Aligned_cols=80  Identities=23%  Similarity=0.304  Sum_probs=71.3

Q ss_pred             HHHHcCCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCc
Q 019802          233 VAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYS  312 (335)
Q Consensus       233 ~~~~l~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~~~~~~fd  312 (335)
                      +.+.+.++++++|||+|||+|..+.++++.   ..+|+++|+|+.+++.++++++..|.+|+++.++|+.++++++++||
T Consensus         7 ll~~~~l~~~~rVLDiGcG~G~~~~~l~~~---~~~v~gvD~s~~~i~~A~~~~~~~~~~~i~~~~~d~~~l~~~~~~fD   83 (231)
T d1vl5a_           7 LMQIAALKGNEEVLDVATGGGHVANAFAPF---VKKVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQMPFTDERFH   83 (231)
T ss_dssp             HHHHHTCCSCCEEEEETCTTCHHHHHHGGG---SSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC-CCCSCTTCEE
T ss_pred             HHHhcCCCCcCEEEEecccCcHHHHHHHHh---CCEEEEEECCHHHHhhhhhcccccccccccccccccccccccccccc
Confidence            345678899999999999999999999876   25899999999999999999999999999999999999998888899


Q ss_pred             eEE
Q 019802          313 EVS  315 (335)
Q Consensus       313 ~V~  315 (335)
                      .|.
T Consensus        84 ~v~   86 (231)
T d1vl5a_          84 IVT   86 (231)
T ss_dssp             EEE
T ss_pred             ccc
Confidence            754

>d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein PH1915, middle and C-terminal domains
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.29  E-value=1.3e-12  Score=120.04  Aligned_cols=106  Identities=16%  Similarity=0.239  Sum_probs=87.9

Q ss_pred             CcccccceEEecCchHHHHHHHcCCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCC-c
Q 019802          215 HPLIVNGCVFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAA-N  293 (335)
Q Consensus       215 ~~~~~~g~~~iQd~~s~l~~~~l~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~-n  293 (335)
                      ..+++.|.|.-|.....++...+  ++|++|||+|||+|+++.+++..  +..+|+++|+|+..++.+++|++..|+. +
T Consensus       121 ~~~~~tG~flDqr~~r~~~~~~~--~~g~~VLDl~~g~G~~si~~a~~--ga~~V~~vD~s~~al~~a~~N~~~ngl~~~  196 (324)
T d2as0a2         121 MRGQKTGFFLDQRENRLALEKWV--QPGDRVLDVFTYTGGFAIHAAIA--GADEVIGIDKSPRAIETAKENAKLNGVEDR  196 (324)
T ss_dssp             SSSSSSCCCSTTHHHHHHHGGGC--CTTCEEEETTCTTTHHHHHHHHT--TCSEEEEEESCHHHHHHHHHHHHHTTCGGG
T ss_pred             ccccccCcccchhhHHHHHHhhc--CCCCeeecccCcccchhhhhhhc--CCcEEEeecCCHHHHHHHHHHHHHcCCCcc
Confidence            34678899999988888876654  67999999999999999998865  4469999999999999999999999994 6


Q ss_pred             EEEEeccCCCCC----CCCCCCceEEEEEEeccccccc
Q 019802          294 IEVLHGDFLNLD----PKDPAYSEVSLIFCIFTWMIIM  327 (335)
Q Consensus       294 i~~~~~D~~~~~----~~~~~fd~V~~IllD~~cs~~g  327 (335)
                      ++++++|+.+..    ....+||   .|++||||++.+
T Consensus       197 ~~~~~~d~~~~~~~~~~~~~~fD---~Vi~DpP~~~~~  231 (324)
T d2as0a2         197 MKFIVGSAFEEMEKLQKKGEKFD---IVVLDPPAFVQH  231 (324)
T ss_dssp             EEEEESCHHHHHHHHHHTTCCEE---EEEECCCCSCSS
T ss_pred             ceeeechhhhhhHHHHhccCCCC---chhcCCccccCC
Confidence            999999987632    2345566   599999998765

>d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein MJ0882
domain: Hypothetical protein MJ0882
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.25  E-value=1.8e-11  Score=104.00  Aligned_cols=91  Identities=22%  Similarity=0.312  Sum_probs=78.2

Q ss_pred             CchHHHHHHHcCCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCc--EEEEeccCCCC
Q 019802          227 GKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAAN--IEVLHGDFLNL  304 (335)
Q Consensus       227 d~~s~l~~~~l~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~n--i~~~~~D~~~~  304 (335)
                      |.+++++...+.+.++++|||+|||+|..+.+++..   ..+|+++|+|+.+++.+++|++..++.+  +++..+|..+ 
T Consensus        38 d~~t~lLi~~l~~~~~~~VLDiGcG~G~~~~~la~~---~~~v~~iD~s~~~i~~a~~n~~~~~l~~~~i~~~~~d~~~-  113 (194)
T d1dusa_          38 DKGTKILVENVVVDKDDDILDLGCGYGVIGIALADE---VKSTTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYE-  113 (194)
T ss_dssp             CHHHHHHHHHCCCCTTCEEEEETCTTSHHHHHHGGG---SSEEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTT-
T ss_pred             CHHHHHHHHhCCcCCCCeEEEEeecCChhHHHHHhh---ccccceeeeccccchhHHHHHHHhCCccceEEEEEcchhh-
Confidence            677888899999999999999999999999999875   3589999999999999999999998865  8999999977 


Q ss_pred             CCCCCCCceEEEEEEecccc
Q 019802          305 DPKDPAYSEVSLIFCIFTWM  324 (335)
Q Consensus       305 ~~~~~~fd~V~~IllD~~cs  324 (335)
                      ...+.+||.   |++|+|..
T Consensus       114 ~~~~~~fD~---Ii~~~p~~  130 (194)
T d1dusa_         114 NVKDRKYNK---IITNPPIR  130 (194)
T ss_dssp             TCTTSCEEE---EEECCCST
T ss_pred             hhccCCceE---EEEcccEE
Confidence            344566764   88888853

>d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical Protein YjhP
domain: Hypothetical Protein YjhP
species: Escherichia coli [TaxId: 562]

Probab=99.23  E-value=3e-11  Score=106.07  Aligned_cols=89  Identities=15%  Similarity=0.151  Sum_probs=76.0

Q ss_pred             cCchHHHHHHHcCCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCc-EEEEeccCCCC
Q 019802          226 QGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAAN-IEVLHGDFLNL  304 (335)
Q Consensus       226 Qd~~s~l~~~~l~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~n-i~~~~~D~~~~  304 (335)
                      ++.....++..+...||++|||+|||+|+.+..+++..  ..+|+++|+|+.+++.++++.+..|+.+ |++.++|+.++
T Consensus        18 ~~~~~~~l~~~~~l~pg~~VLDiGCG~G~~~~~la~~~--~~~v~GvD~s~~~~~~ar~~~~~~gl~~~v~~~~~d~~~~   95 (245)
T d1nkva_          18 TEEKYATLGRVLRMKPGTRILDLGSGSGEMLCTWARDH--GITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGY   95 (245)
T ss_dssp             CHHHHHHHHHHTCCCTTCEEEEETCTTCHHHHHHHHHT--CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTTC
T ss_pred             CHHHHHHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHhc--CCEEEEEecccchhhHHHHHHHHhhccccchhhhhHHhhc
Confidence            34455667888999999999999999999999998874  3689999999999999999999999865 99999999998


Q ss_pred             CCCCCCCceEEEE
Q 019802          305 DPKDPAYSEVSLI  317 (335)
Q Consensus       305 ~~~~~~fd~V~~I  317 (335)
                      . .+++||.|.++
T Consensus        96 ~-~~~~fD~v~~~  107 (245)
T d1nkva_          96 V-ANEKCDVAACV  107 (245)
T ss_dssp             C-CSSCEEEEEEE
T ss_pred             c-ccCceeEEEEE
Confidence            4 46779876544

>d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein PH1948
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.23  E-value=1.4e-11  Score=105.42  Aligned_cols=84  Identities=19%  Similarity=0.199  Sum_probs=69.4

Q ss_pred             HHHcCCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCce
Q 019802          234 AAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSE  313 (335)
Q Consensus       234 ~~~l~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~~~~~~fd~  313 (335)
                      +...+...|.+|||+|||+|+.+..++.+  +..+|+++|+++.+++.+++|++.++. ++.++++|+..++   ..||.
T Consensus        39 ~~~~~dl~g~~vLDlg~GtG~l~i~a~~~--g~~~v~~vdi~~~~~~~a~~N~~~~~~-~~~~~~~d~~~~~---~~fD~  112 (201)
T d1wy7a1          39 AYSLGDIEGKVVADLGAGTGVLSYGALLL--GAKEVICVEVDKEAVDVLIENLGEFKG-KFKVFIGDVSEFN---SRVDI  112 (201)
T ss_dssp             HHHTTSSTTCEEEEETCTTCHHHHHHHHT--TCSEEEEEESCHHHHHHHHHHTGGGTT-SEEEEESCGGGCC---CCCSE
T ss_pred             HHhcCCCCCCEEEECcCcchHHHHHHHHc--CCCEEEEEcCcHHHHHHHHHHHHHcCC-CceEEECchhhhC---CcCcE
Confidence            34455567899999999999999987754  446999999999999999999999997 5789999997764   34775


Q ss_pred             EEEEEEecccccc
Q 019802          314 VSLIFCIFTWMII  326 (335)
Q Consensus       314 V~~IllD~~cs~~  326 (335)
                         |++|||+...
T Consensus       113 ---Vi~nPP~~~~  122 (201)
T d1wy7a1         113 ---VIMNPPFGSQ  122 (201)
T ss_dssp             ---EEECCCCSSS
T ss_pred             ---EEEcCccccc
Confidence               8999999543

>d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.20  E-value=5.2e-11  Score=103.53  Aligned_cols=88  Identities=20%  Similarity=0.217  Sum_probs=75.5

Q ss_pred             HHHHc--CCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCC-----CcEEEEeccCCCCC
Q 019802          233 VAAAL--APKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGA-----ANIEVLHGDFLNLD  305 (335)
Q Consensus       233 ~~~~l--~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~-----~ni~~~~~D~~~~~  305 (335)
                      +.++|  +.+||++|||+|||+|..|..||+++++.|+|+++|+++.+++.+++|+++.++     .++.+.++|+....
T Consensus        66 ~le~L~~~l~~g~~VLdiG~GsGy~ta~la~l~~~~g~V~~ie~~~~l~~~a~~~l~~~~~~~~~~~~~~~~~gD~~~~~  145 (224)
T d1i1na_          66 ALELLFDQLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMGY  145 (224)
T ss_dssp             HHHHTTTTSCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGCC
T ss_pred             HHHHHhhccCCCCeEEEecCCCCHHHHHHHHHhCCCceEEEEcCCHHHHHHHHHhccccCcccccccceEEEEeeccccc
Confidence            33455  678999999999999999999999999899999999999999999999998665     57899999998887


Q ss_pred             CCCCCCceEEEEEEeccc
Q 019802          306 PKDPAYSEVSLIFCIFTW  323 (335)
Q Consensus       306 ~~~~~fd~V~~IllD~~c  323 (335)
                      +....||.   |+++..+
T Consensus       146 ~~~~~fD~---I~~~~~~  160 (224)
T d1i1na_         146 AEEAPYDA---IHVGAAA  160 (224)
T ss_dssp             GGGCCEEE---EEECSBB
T ss_pred             chhhhhhh---hhhhcch
Confidence            77777875   7776543

>d1eyva_ a.79.1.1 (A:) Antitermination factor NusB {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: NusB-like
superfamily: NusB-like
family: Antitermination factor NusB
domain: Antitermination factor NusB
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.20  E-value=9.2e-11  Score=93.33  Aligned_cols=113  Identities=13%  Similarity=0.136  Sum_probs=81.2

Q ss_pred             HHHHHHHHHHHHHccchh-hhhhhhhhhhc--cCCCccCHHHHHHHHHHHHhchHHHHHHHhhcccccc-cccc----hH
Q 019802           34 ARREAAKVLRLVLRGDAR-RRAVGSIKSLV--YSPSVKNKKATYALVCQTLKHLSIIKQVLDSASILNS-KWKR----QE  105 (335)
Q Consensus        34 aR~~A~~iL~~v~~~~~~-~~~l~~~~~~~--~~~~~~dr~l~~~LV~gvlR~~~~LD~il~~~~ll~~-~~~~----~~  105 (335)
                      +|..|+++|+++..++.. ...+.......  .....++++|+++|++||++++..||++|.+  +++. +.+.    .+
T Consensus         5 aR~~a~q~Ly~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gv~~~~~~id~~I~~--~l~~~~~~~l~~i~~   82 (131)
T d1eyva_           5 ARKRAVALLFEAEVRGISAAEVVDTRAALAEAKPDIARLHPYTAAVARGVSEHAAHIDDLITA--HLRGWTLDRLPAVDR   82 (131)
T ss_dssp             HHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTSCCCCHHHHHHHHHHHHTHHHHHHHHHT--TSTTCCGGGSCHHHH
T ss_pred             HHHHHHHHHHHHHhhCcCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHhHHHHHHHHHH--hhhhhHHHHhhHHHH
Confidence            899999999998775433 33333221111  2234578899999999999999999999997  4543 2222    36


Q ss_pred             HHHHHHHHHHHhcCCCCchhHHHHHHHHhhhh---HHHHHHHHHHH
Q 019802          106 ELVYILTYDILFGQEISLVGDAEKFLMLHKGA---IQLALAQLLVR  148 (335)
Q Consensus       106 ~lLrl~lyqllf~~~iP~~a~v~~~v~~~k~~---~~~~l~~~~~~  148 (335)
                      .+||+|+||++|++.+|.++.++++|+..|.-   -..+|.+.+.+
T Consensus        83 ~iLr~a~~El~~~~~~p~~viInE~V~lak~~~~~~~~kfiNaVL~  128 (131)
T d1eyva_          83 AILRVSVWELLHAADVPEPVVVDEAVQLAKELSTDDSPGFVNGVLG  128 (131)
T ss_dssp             HHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHSCTTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcccCCchhHHHHHHHHHHHhCCCcccchhHHHHH
Confidence            89999999999998899999999999876531   12345555544

>d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Putative sarcosine dimethylglycine methyltransferase
species: Red algae (Galdieria sulphuraria) [TaxId: 130081]

Probab=99.19  E-value=4.9e-11  Score=106.92  Aligned_cols=79  Identities=22%  Similarity=0.182  Sum_probs=70.6

Q ss_pred             HcCCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCC-cEEEEeccCCCCCCCCCCCceE
Q 019802          236 ALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAA-NIEVLHGDFLNLDPKDPAYSEV  314 (335)
Q Consensus       236 ~l~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~-ni~~~~~D~~~~~~~~~~fd~V  314 (335)
                      ...+.+|.+|||+|||+|+.+..|++..+  .+|+++|+|+.+++.++++++..|+. +|+++++|+.+++.++++||.|
T Consensus        62 ~~~l~~~~~vLDiGcG~G~~~~~la~~~~--~~v~gvD~s~~~i~~a~~~~~~~gl~~~v~~~~~d~~~l~~~~~sfD~V  139 (282)
T d2o57a1          62 TGVLQRQAKGLDLGAGYGGAARFLVRKFG--VSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEIPCEDNSYDFI  139 (282)
T ss_dssp             TTCCCTTCEEEEETCTTSHHHHHHHHHHC--CEEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTSCSSCTTCEEEE
T ss_pred             hcCCCCCCEEEEeCCCCcHHHhhhhccCC--cEEEEEeccchhhhhhhcccccccccccccccccccccccccccccchh
Confidence            34678999999999999999999998753  58999999999999999999999995 6999999999999888889975


Q ss_pred             EE
Q 019802          315 SL  316 (335)
Q Consensus       315 ~~  316 (335)
                      .+
T Consensus       140 ~~  141 (282)
T d2o57a1         140 WS  141 (282)
T ss_dssp             EE
T ss_pred             hc
Confidence            43

>d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Met-10+ protein-like
domain: Hypothetical protein PH0793
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.17  E-value=5e-11  Score=105.90  Aligned_cols=83  Identities=19%  Similarity=0.228  Sum_probs=71.9

Q ss_pred             CCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCc-EEEEeccCCCCCCCCCCCceEEEE
Q 019802          239 PKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAAN-IEVLHGDFLNLDPKDPAYSEVSLI  317 (335)
Q Consensus       239 ~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~n-i~~~~~D~~~~~~~~~~fd~V~~I  317 (335)
                      .++|++|||+|||+|+.+.++|..  +.++|+|+|+++..++.+++|++..|+.+ |+++++|+.++... ..||   .|
T Consensus       105 ~~~g~~VlD~~aG~G~~~l~~a~~--~~~~V~avd~n~~a~~~~~~N~~~n~l~~~v~~~~~D~~~~~~~-~~~D---~I  178 (260)
T d2frna1         105 AKPDELVVDMFAGIGHLSLPIAVY--GKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPGE-NIAD---RI  178 (260)
T ss_dssp             CCTTCEEEETTCTTTTTHHHHHHH--TCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCCC-SCEE---EE
T ss_pred             cCCccEEEECcceEcHHHHHHHHh--CCcEEEEecCCHHHHHHHHHHHHHhCCCceEEEEEcchHHhccC-CCCC---EE
Confidence            478999999999999999999986  34699999999999999999999999976 99999999988754 4466   48


Q ss_pred             EEeccccccc
Q 019802          318 FCIFTWMIIM  327 (335)
Q Consensus       318 llD~~cs~~g  327 (335)
                      ++++|+++..
T Consensus       179 i~~~p~~~~~  188 (260)
T d2frna1         179 LMGYVVRTHE  188 (260)
T ss_dssp             EECCCSSGGG
T ss_pred             EECCCCchHH
Confidence            8998887654

>d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein SMu776, middle and C-terminal domains
species: Streptococcus mutans [TaxId: 1309]

Probab=99.14  E-value=2e-11  Score=111.64  Aligned_cols=106  Identities=15%  Similarity=0.095  Sum_probs=82.3

Q ss_pred             CCcccccceEEecCchHHHHHHHcCCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCC--
Q 019802          214 VHPLIVNGCVFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGA--  291 (335)
Q Consensus       214 ~~~~~~~g~~~iQd~~s~l~~~~l~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~--  291 (335)
                      -..+++.|.|.-|......++.  ...+|.+|||+|||+|+++++++..  +...|+++|+|+..++.+++|++..|+  
T Consensus       119 l~~g~ktGlflDqR~~r~~l~~--~~~~g~~VLdlf~~~G~~sl~aa~~--ga~~V~~vD~s~~a~~~a~~N~~~n~l~~  194 (317)
T d2b78a2         119 LNDGLMTGIFLDQRQVRNELIN--GSAAGKTVLNLFSYTAAFSVAAAMG--GAMATTSVDLAKRSRALSLAHFEANHLDM  194 (317)
T ss_dssp             SSSSSCCSSCGGGHHHHHHHHH--TTTBTCEEEEETCTTTHHHHHHHHT--TBSEEEEEESCTTHHHHHHHHHHHTTCCC
T ss_pred             cccccccCCcHHHHHHHHHHHH--HhhCCCceeecCCCCcHHHHHHHhC--CCceEEEecCCHHHHHHHHHHHHHhcccC
Confidence            3457888988888765443332  3457999999999999999988753  456899999999999999999999887  


Q ss_pred             CcEEEEeccCCCCC----CCCCCCceEEEEEEecccccc
Q 019802          292 ANIEVLHGDFLNLD----PKDPAYSEVSLIFCIFTWMII  326 (335)
Q Consensus       292 ~ni~~~~~D~~~~~----~~~~~fd~V~~IllD~~cs~~  326 (335)
                      .+++++++|+.+.-    .....||   .|++|||+.+.
T Consensus       195 ~~~~~i~~d~~~~l~~~~~~~~~fD---~Ii~DPP~f~~  230 (317)
T d2b78a2         195 ANHQLVVMDVFDYFKYARRHHLTYD---IIIIDPPSFAR  230 (317)
T ss_dssp             TTEEEEESCHHHHHHHHHHTTCCEE---EEEECCCCC--
T ss_pred             cceEEEEccHHHHHHHHHhhcCCCC---EEEEcChhhcc
Confidence            46999999996642    2344566   59999998754

>d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=99.13  E-value=1.2e-10  Score=100.53  Aligned_cols=98  Identities=19%  Similarity=0.258  Sum_probs=81.0

Q ss_pred             cceEEecCchHHHHHHHcCCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEec
Q 019802          220 NGCVFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHG  299 (335)
Q Consensus       220 ~g~~~iQd~~s~l~~~~l~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~  299 (335)
                      .|....+-.-...+.+.|++++|++|||+|||+|..|..|+.+.+  ++|+++|.++...+.++++++++|+.|+.++++
T Consensus        57 ~g~~is~P~~~a~ml~~L~l~~g~~VLeIGsGsGY~taila~l~g--~~V~~ie~~~~l~~~a~~~l~~~g~~nv~~~~g  134 (215)
T d1jg1a_          57 AGQTVSAPHMVAIMLEIANLKPGMNILEVGTGSGWNAALISEIVK--TDVYTIERIPELVEFAKRNLERAGVKNVHVILG  134 (215)
T ss_dssp             TTCEECCHHHHHHHHHHHTCCTTCCEEEECCTTSHHHHHHHHHHC--SCEEEEESCHHHHHHHHHHHHHTTCCSEEEEES
T ss_pred             hhhhhhhhhhHHHHHHhhccCccceEEEecCCCChhHHHHHHhhC--ceeEEEeccHHHHHHHHHHHHHcCCceeEEEEC
Confidence            344444433334456788999999999999999999999999874  579999999999999999999999999999999


Q ss_pred             cCCCCCCCCCCCceEEEEEEecc
Q 019802          300 DFLNLDPKDPAYSEVSLIFCIFT  322 (335)
Q Consensus       300 D~~~~~~~~~~fd~V~~IllD~~  322 (335)
                      |+....+....||.   |++...
T Consensus       135 d~~~g~~~~~pfD~---Iiv~~a  154 (215)
T d1jg1a_         135 DGSKGFPPKAPYDV---IIVTAG  154 (215)
T ss_dssp             CGGGCCGGGCCEEE---EEECSB
T ss_pred             ccccCCcccCccee---EEeecc
Confidence            99887776777885   666533

>d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.09  E-value=1.8e-10  Score=100.43  Aligned_cols=85  Identities=22%  Similarity=0.217  Sum_probs=69.0

Q ss_pred             cCCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCceEEE
Q 019802          237 LAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVSL  316 (335)
Q Consensus       237 l~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~~~~~~fd~V~~  316 (335)
                      +.++||++|||+|||+|..+.|+|+.. ++|.|+|+|+|+.+++.+++++++.  .|+.++.+|+..........+.++.
T Consensus        70 l~ikpG~~VLDlGcGsG~~~~~la~~~-~~g~V~aVDiS~~~i~~a~~~a~~~--~ni~~i~~d~~~~~~~~~~~~~v~~  146 (230)
T d1g8sa_          70 MPIKRDSKILYLGASAGTTPSHVADIA-DKGIVYAIEYAPRIMRELLDACAER--ENIIPILGDANKPQEYANIVEKVDV  146 (230)
T ss_dssp             CCCCTTCEEEEESCCSSHHHHHHHHHT-TTSEEEEEESCHHHHHHHHHHTTTC--TTEEEEECCTTCGGGGTTTCCCEEE
T ss_pred             CCCCCCCEEEEeCEEcCHHHHHHHHhC-CCCEEEEEeCcHHHHHHHHHHHhhh--cccceEEEeeccCcccccccceeEE
Confidence            347899999999999999999999974 5689999999999999999987754  5788999999887653333445677


Q ss_pred             EEEecccc
Q 019802          317 IFCIFTWM  324 (335)
Q Consensus       317 IllD~~cs  324 (335)
                      ++.|..+.
T Consensus       147 i~~~~~~~  154 (230)
T d1g8sa_         147 IYEDVAQP  154 (230)
T ss_dssp             EEECCCST
T ss_pred             eeccccch
Confidence            77776543

>d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Putative methyltransferase Atu0340
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=99.07  E-value=6.7e-11  Score=107.15  Aligned_cols=109  Identities=16%  Similarity=0.085  Sum_probs=89.6

Q ss_pred             CCcccccceEEecCchHHHHHHHc-CCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCC
Q 019802          214 VHPLIVNGCVFLQGKASSMVAAAL-APKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAA  292 (335)
Q Consensus       214 ~~~~~~~g~~~iQd~~s~l~~~~l-~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~  292 (335)
                      -.++.+.|.|.-|...-.++...+ ...+|.+|||+|||+|+++.+++..   ..+|+++|.|+..++.+++|++..|+.
T Consensus       104 ~~~~~~tG~f~dqr~nr~~~~~~~~~~~~~~rVLdlf~~tG~~sl~aa~~---GA~V~~VD~s~~al~~a~~N~~ln~~~  180 (309)
T d2igta1         104 FTAFRHVGVFPEQIVHWEWLKNAVETADRPLKVLNLFGYTGVASLVAAAA---GAEVTHVDASKKAIGWAKENQVLAGLE  180 (309)
T ss_dssp             CCSSSCCSCCGGGHHHHHHHHHHHHHSSSCCEEEEETCTTCHHHHHHHHT---TCEEEEECSCHHHHHHHHHHHHHHTCT
T ss_pred             ccCCCccccccchhHHHHHHHHHHhhccCCCeEEEecCCCcHHHHHHHhC---CCeEEEEeChHHHHHHHHHhhhhhccc
Confidence            356788899999998887777654 3457889999999999999998864   358999999999999999999999985


Q ss_pred             --cEEEEeccCCCCC----CCCCCCceEEEEEEecccccccc
Q 019802          293 --NIEVLHGDFLNLD----PKDPAYSEVSLIFCIFTWMIIMF  328 (335)
Q Consensus       293 --ni~~~~~D~~~~~----~~~~~fd~V~~IllD~~cs~~g~  328 (335)
                        +++++++|+.++-    .....||.   |+||||+.+.|-
T Consensus       181 ~~~~~~i~~D~~~~l~~~~~~~~~fD~---IilDPP~f~~~~  219 (309)
T d2igta1         181 QAPIRWICEDAMKFIQREERRGSTYDI---ILTDPPKFGRGT  219 (309)
T ss_dssp             TSCEEEECSCHHHHHHHHHHHTCCBSE---EEECCCSEEECT
T ss_pred             CCcEEEEeCCHHHhHHHHhhcCCCCCE---EEECCCcccccc
Confidence              4999999997653    22456885   999999987664

>d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical protein PH0226
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.06  E-value=3.6e-10  Score=96.80  Aligned_cols=73  Identities=23%  Similarity=0.319  Sum_probs=64.7

Q ss_pred             CCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCceEE
Q 019802          239 PKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVS  315 (335)
Q Consensus       239 ~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~~~~~~fd~V~  315 (335)
                      .+++++|||+|||+|..+.++++.   ..+|+|+|+|+.+++.+++++...+. ++..+++|+.+++..+++||.|.
T Consensus        35 l~~~~~ILDiGcG~G~~~~~la~~---~~~v~giD~S~~~i~~ak~~~~~~~~-~~~~~~~d~~~l~~~~~~fD~I~  107 (226)
T d1ve3a1          35 MKKRGKVLDLACGVGGFSFLLEDY---GFEVVGVDISEDMIRKAREYAKSRES-NVEFIVGDARKLSFEDKTFDYVI  107 (226)
T ss_dssp             CCSCCEEEEETCTTSHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHTTC-CCEEEECCTTSCCSCTTCEEEEE
T ss_pred             cCCCCEEEEECCCcchhhhhHhhh---hcccccccccccchhhhhhhhccccc-cccccccccccccccCcCceEEE
Confidence            357889999999999999999975   46899999999999999999998886 57889999999998888898743

>d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methyltransferase SPy1538
species: Streptococcus pyogenes [TaxId: 1314]

Probab=99.05  E-value=9.5e-11  Score=95.65  Aligned_cols=79  Identities=20%  Similarity=0.247  Sum_probs=67.0

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCc-EEEEeccCCCCC-CCCCCCceEEEEE
Q 019802          241 PGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAAN-IEVLHGDFLNLD-PKDPAYSEVSLIF  318 (335)
Q Consensus       241 ~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~n-i~~~~~D~~~~~-~~~~~fd~V~~Il  318 (335)
                      .|.+|||+|||+|+.+..++.+  +..+|+++|.++..++.+++|++.+|+.+ ++++++|+.... .....||   .|+
T Consensus        14 ~g~~vlDl~~GtG~~~iea~~r--ga~~v~~ve~~~~a~~~~~~n~~~~~~~~~~~ii~~D~~~~l~~~~~~fD---iIf   88 (152)
T d2esra1          14 NGGRVLDLFAGSGGLAIEAVSR--GMSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAIDCLTGRFD---LVF   88 (152)
T ss_dssp             CSCEEEEETCTTCHHHHHHHHT--TCCEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHHHBCSCEE---EEE
T ss_pred             CCCeEEEcCCccCHHHHHHHHh--Ccceeeeehhchhhhhhhhhhhhhcccccchhhhcccccccccccccccc---eeE
Confidence            6899999999999999987765  44699999999999999999999999966 999999997743 3344565   599


Q ss_pred             Eecccc
Q 019802          319 CIFTWM  324 (335)
Q Consensus       319 lD~~cs  324 (335)
                      +|||..
T Consensus        89 ~DPPy~   94 (152)
T d2esra1          89 LDPPYA   94 (152)
T ss_dssp             ECCSSH
T ss_pred             echhhc
Confidence            999964

>d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Bacillus subtilis [TaxId: 1423]

Probab=99.02  E-value=4.3e-10  Score=96.15  Aligned_cols=80  Identities=19%  Similarity=0.080  Sum_probs=68.9

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCC--CCCCCCceEEEEE
Q 019802          241 PGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLD--PKDPAYSEVSLIF  318 (335)
Q Consensus       241 ~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~--~~~~~fd~V~~Il  318 (335)
                      ++..|||+|||+|..+.++|+. .++..++|+|+++.++..+.+++++.|++||.++++|+..+.  ..+.++|.|...+
T Consensus        29 ~~PlvLeIGcG~G~~~~~lA~~-~p~~~~iGiD~~~~~i~~a~~~~~~~~l~Nv~~~~~Da~~l~~~~~~~~~d~v~i~f  107 (204)
T d2fcaa1          29 DNPIHIEVGTGKGQFISGMAKQ-NPDINYIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDADTLTDVFEPGEVKRVYLNF  107 (204)
T ss_dssp             CCCEEEEECCTTSHHHHHHHHH-CTTSEEEEECSCHHHHHHHHHHHHHSCCSSEEEECCCGGGHHHHCCTTSCCEEEEES
T ss_pred             CCceEEEEEecCcHHHHHHHHh-CCCCcEEEeecchHHHHHHHHHHHHHhccCchhcccchhhhhcccCchhhhcccccc
Confidence            4568999999999999999998 567899999999999999999999999999999999998865  4567788755444


Q ss_pred             Eec
Q 019802          319 CIF  321 (335)
Q Consensus       319 lD~  321 (335)
                      .||
T Consensus       108 p~P  110 (204)
T d2fcaa1         108 SDP  110 (204)
T ss_dssp             CCC
T ss_pred             ccc
Confidence            444

>d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N5-glutamine methyltransferase, HemK
domain: N5-glutamine methyltransferase, HemK
species: Escherichia coli [TaxId: 562]

Probab=99.00  E-value=7.5e-10  Score=98.71  Aligned_cols=82  Identities=16%  Similarity=0.230  Sum_probs=70.1

Q ss_pred             CCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCceEEEEEE
Q 019802          240 KPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVSLIFC  319 (335)
Q Consensus       240 ~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~~~~~~fd~V~~Ill  319 (335)
                      ..+.+|||+|||+|..++.++...+ +.+|+|+|+|+..++.+++|++++|++||+++++|..+..+ +.+||   .|+.
T Consensus       107 ~~~~~vlDlGtGSG~I~i~la~~~p-~~~v~avDis~~Al~~A~~Na~~~~~~~v~~~~~d~~~~~~-~~~fD---lIvs  181 (274)
T d2b3ta1         107 EQPCRILDLGTGTGAIALALASERP-DCEIIAVDRMPDAVSLAQRNAQHLAIKNIHILQSDWFSALA-GQQFA---MIVS  181 (274)
T ss_dssp             SSCCEEEEETCTTSHHHHHHHHHCT-TSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCSTTGGGT-TCCEE---EEEE
T ss_pred             ccccceeeeehhhhHHHHHHHhhCC-cceeeeccchhHHHhHHHHHHHHhCcccceeeecccccccC-CCcee---EEEe
Confidence            4567899999999999999998854 58999999999999999999999999999999999876432 34565   5999


Q ss_pred             ecccccc
Q 019802          320 IFTWMII  326 (335)
Q Consensus       320 D~~cs~~  326 (335)
                      +||.-..
T Consensus       182 NPPYi~~  188 (274)
T d2b3ta1         182 NPPYIDE  188 (274)
T ss_dssp             CCCCBCT
T ss_pred             cchhhhh
Confidence            9998643

>d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Sulfolobus tokodaii [TaxId: 111955]

Probab=99.00  E-value=9.9e-10  Score=95.14  Aligned_cols=94  Identities=20%  Similarity=0.218  Sum_probs=74.0

Q ss_pred             ceEEecCchHHHHHHHcCCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEecc
Q 019802          221 GCVFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGD  300 (335)
Q Consensus       221 g~~~iQd~~s~l~~~~l~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D  300 (335)
                      |....+-.-...+.+.|++++|++|||+|||+|..|..|+.+.   ++|+++|+++..++.+++++..  ..|+.++++|
T Consensus        50 g~~~~~p~~~a~ml~~L~l~~g~~VLdIG~GsGy~ta~La~l~---~~V~aiE~~~~~~~~A~~~~~~--~~nv~~~~~d  124 (224)
T d1vbfa_          50 GINTTALNLGIFMLDELDLHKGQKVLEIGTGIGYYTALIAEIV---DKVVSVEINEKMYNYASKLLSY--YNNIKLILGD  124 (224)
T ss_dssp             TEEECCHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHS---SEEEEEESCHHHHHHHHHHHTT--CSSEEEEESC
T ss_pred             CCceehhhhHHHHHHHhhhcccceEEEecCCCCHHHHHHHHHh---cccccccccHHHHHHHHHHHhc--ccccccccCc
Confidence            4433333332344668899999999999999999999999883   6899999999999999998774  4689999999


Q ss_pred             CCCCCCCCCCCceEEEEEEecc
Q 019802          301 FLNLDPKDPAYSEVSLIFCIFT  322 (335)
Q Consensus       301 ~~~~~~~~~~fd~V~~IllD~~  322 (335)
                      +....+...+||.   |++.+.
T Consensus       125 ~~~g~~~~~pfD~---Iiv~~a  143 (224)
T d1vbfa_         125 GTLGYEEEKPYDR---VVVWAT  143 (224)
T ss_dssp             GGGCCGGGCCEEE---EEESSB
T ss_pred             hhhcchhhhhHHH---HHhhcc
Confidence            9876555666875   676543

>d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TehB-like
domain: Putative methyltransferase TehB
species: Salmonella typhimurium [TaxId: 90371]

Probab=98.99  E-value=1.1e-09  Score=92.69  Aligned_cols=70  Identities=21%  Similarity=0.202  Sum_probs=62.5

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCceE
Q 019802          241 PGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEV  314 (335)
Q Consensus       241 ~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~~~~~~fd~V  314 (335)
                      .+.+|||+|||+|..+..++++   ..+|+++|+|+.+++.++++.+..|++++.+...|+..+++ ++.||.|
T Consensus        30 ~~grvLDiGcG~G~~~~~la~~---g~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~d~~~~~~-~~~fD~I   99 (198)
T d2i6ga1          30 APGRTLDLGCGNGRNSLYLAAN---GYDVTAWDKNPASMANLERIKAAEGLDNLQTDLVDLNTLTF-DGEYDFI   99 (198)
T ss_dssp             CSCEEEEETCTTSHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHTTCTTEEEEECCTTTCCC-CCCEEEE
T ss_pred             CCCcEEEECCCCCHHHHHHHHH---hhhhccccCcHHHHHHHHHHhhhccccchhhhheecccccc-cccccEE
Confidence            3459999999999999999986   36899999999999999999999999999999999999876 4568864

>d2fpoa1 c.66.1.46 (A:10-192) Methylase YhhF {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methylase YhhF
species: Escherichia coli [TaxId: 562]

Probab=98.99  E-value=4e-10  Score=94.73  Aligned_cols=79  Identities=13%  Similarity=0.156  Sum_probs=67.9

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCC-CCCCCCceEEEEEE
Q 019802          241 PGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLD-PKDPAYSEVSLIFC  319 (335)
Q Consensus       241 ~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~-~~~~~fd~V~~Ill  319 (335)
                      .+.+|||+|||+|..++.++.+  +..+|+++|.+...++.+++|++.+++.++++++.|+.++. .....|   |.|++
T Consensus        43 ~~~~vLDlfaGsG~~giealsr--Ga~~v~~VE~~~~a~~~~k~N~~~~~~~~~~ii~~d~~~~l~~~~~~f---DlIf~  117 (183)
T d2fpoa1          43 VDAQCLDCFAGSGALGLEALSR--YAAGATLIEMDRAVSQQLIKNLATLKAGNARVVNSNAMSFLAQKGTPH---NIVFV  117 (183)
T ss_dssp             TTCEEEETTCTTCHHHHHHHHT--TCSEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCHHHHHSSCCCCE---EEEEE
T ss_pred             chhhhhhhhccccceeeeEEec--CcceeEEEEEeechhhHHHHHHhhccccceeeeeeccccccccccccc---CEEEE
Confidence            5789999999999999988876  45699999999999999999999999999999999987653 233445   46999


Q ss_pred             ecccc
Q 019802          320 IFTWM  324 (335)
Q Consensus       320 D~~cs  324 (335)
                      |||..
T Consensus       118 DPPY~  122 (183)
T d2fpoa1         118 DPPFR  122 (183)
T ss_dssp             CCSSS
T ss_pred             cCccc
Confidence            99975

>d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.97  E-value=7.5e-10  Score=95.91  Aligned_cols=87  Identities=28%  Similarity=0.333  Sum_probs=72.5

Q ss_pred             HHHc--CCCCCCEEEEEcCCCchHHHHHHHHcCCC-----eEEEEEeCCHHHHHHHHHHHHHh-----CCCcEEEEeccC
Q 019802          234 AAAL--APKPGWKVLDACSAPGNKTVHLAALMKGK-----GKIVACELNKERVRRLKDTIKLS-----GAANIEVLHGDF  301 (335)
Q Consensus       234 ~~~l--~~~~g~~VLD~cagpG~kt~~la~~~~~~-----g~i~a~D~~~~rl~~~~~~~~~~-----g~~ni~~~~~D~  301 (335)
                      .++|  +.+||++|||+|||+|..|..|+.+++..     ++|+++|++++.++.+++|+...     ++.||.+.++|+
T Consensus        71 l~~L~~~l~~g~~VLeIGtGsGY~ta~la~l~g~~g~~~~~~V~~iE~~~~l~~~a~~~l~~~~~~~~~~~nv~~~~~d~  150 (223)
T d1r18a_          71 LEYLRDHLKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEGDG  150 (223)
T ss_dssp             HHHTTTTCCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEESCG
T ss_pred             HHHHhhccCCCCeEEEecCCCCHHHHHHHHHhhhccCCcccEEEEEecCHHHHHHHHHhhhhcchhhcCccEEEEEeccc
Confidence            3444  78899999999999999999999987543     48999999999999999987653     567899999999


Q ss_pred             CCCCCCCCCCceEEEEEEeccc
Q 019802          302 LNLDPKDPAYSEVSLIFCIFTW  323 (335)
Q Consensus       302 ~~~~~~~~~fd~V~~IllD~~c  323 (335)
                      .+..+....||.   |++++.+
T Consensus       151 ~~~~~~~~~fD~---Iiv~~a~  169 (223)
T d1r18a_         151 RKGYPPNAPYNA---IHVGAAA  169 (223)
T ss_dssp             GGCCGGGCSEEE---EEECSCB
T ss_pred             ccccccccceee---EEEEeec
Confidence            887766667875   7887654

>d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Adrenal gland protein AD-003 (C9orf32)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.95  E-value=3.9e-10  Score=97.31  Aligned_cols=76  Identities=12%  Similarity=0.123  Sum_probs=65.8

Q ss_pred             CCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCceEE
Q 019802          238 APKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVS  315 (335)
Q Consensus       238 ~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~~~~~~fd~V~  315 (335)
                      ...++.+|||+|||+|..+.+++...  ..+|+++|+|+.+++.+++++...+..+++++++|++++++.+.+||.|.
T Consensus        57 ~~~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~~vD~s~~~l~~ak~~~~~~~~~~~~f~~~d~~~~~~~~~~fD~I~  132 (222)
T d2ex4a1          57 NKTGTSCALDCGAGIGRITKRLLLPL--FREVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDFTPEPDSYDVIW  132 (222)
T ss_dssp             -CCCCSEEEEETCTTTHHHHHTTTTT--CSEEEEEESCHHHHHHHHHHTGGGGGGEEEEEECCGGGCCCCSSCEEEEE
T ss_pred             CCCCCCEEEEeccCCCHhhHHHHHhc--CCEEEEeecCHHHhhccccccccccccccccccccccccccccccccccc
Confidence            45678899999999999999886543  35899999999999999999999888899999999999988888898743

>d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=98.94  E-value=2.3e-09  Score=91.55  Aligned_cols=80  Identities=18%  Similarity=0.096  Sum_probs=67.9

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCC--CCCCCCceEEEEE
Q 019802          241 PGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLD--PKDPAYSEVSLIF  318 (335)
Q Consensus       241 ~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~--~~~~~fd~V~~Il  318 (335)
                      .+..|||+|||.|..+.++|+.. ++..++++|+++.++..+.+++++.|++||.++++|+..+.  .++.++|.|...+
T Consensus        31 ~~plvLdIGcG~G~~~~~lA~~~-p~~~~iGid~~~~~v~~a~~~~~~~~l~Ni~~~~~da~~l~~~~~~~~~~~i~i~f  109 (204)
T d1yzha1          31 DNPIHVEVGSGKGAFVSGMAKQN-PDINYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDGSDLTDYFEDGEIDRLYLNF  109 (204)
T ss_dssp             CCCEEEEESCTTSHHHHHHHHHC-TTSEEEEEESCHHHHHHHHHHHHHHCCSSEEEEECCSSCGGGTSCTTCCSEEEEES
T ss_pred             CCCeEEEEeccCCHHHHHHHHHC-CCCceEEEeccHHHHHHHHHhhhhhccccceeeecCHHHHhhhccCCceehhcccc
Confidence            35689999999999999999985 56899999999999999999999999999999999998876  3456777754444


Q ss_pred             Eec
Q 019802          319 CIF  321 (335)
Q Consensus       319 lD~  321 (335)
                      -||
T Consensus       110 PdP  112 (204)
T d1yzha1         110 SDP  112 (204)
T ss_dssp             CCC
T ss_pred             ccc
Confidence            444

>d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical methyltransferase PH1305
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=98.94  E-value=1.9e-09  Score=94.09  Aligned_cols=72  Identities=29%  Similarity=0.400  Sum_probs=63.3

Q ss_pred             CCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCceE
Q 019802          238 APKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEV  314 (335)
Q Consensus       238 ~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~~~~~~fd~V  314 (335)
                      ...++.+|||+|||+|..+..+++.   ...|+++|+|+.|++.++++++..+. ++++.++|++++++++ .||.|
T Consensus        38 ~~~~~~~iLDiGcGtG~~~~~l~~~---~~~v~gvD~s~~mi~~a~~~~~~~~~-~i~~~~~d~~~l~~~~-~fD~I  109 (251)
T d1wzna1          38 AKREVRRVLDLACGTGIPTLELAER---GYEVVGLDLHEEMLRVARRKAKERNL-KIEFLQGDVLEIAFKN-EFDAV  109 (251)
T ss_dssp             CSSCCCEEEEETCTTCHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHTTC-CCEEEESCGGGCCCCS-CEEEE
T ss_pred             cCCCCCEEEEeCCCCCccchhhccc---ceEEEEEeeccccccccccccccccc-cchheehhhhhccccc-ccchH
Confidence            5567789999999999999999986   35899999999999999999999887 6999999999998764 68753

>d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA1
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.94  E-value=1.8e-09  Score=96.83  Aligned_cols=87  Identities=17%  Similarity=0.227  Sum_probs=74.4

Q ss_pred             cCchHHHHHHHcCCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCC-CcEEEEeccCCCC
Q 019802          226 QGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGA-ANIEVLHGDFLNL  304 (335)
Q Consensus       226 Qd~~s~l~~~~l~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~-~ni~~~~~D~~~~  304 (335)
                      |+.-..+++..++++||++|||+|||.|+.+.++|+..+  .+|+++++|+..++.++++.++.|. .++.+..+|+.++
T Consensus        47 Q~~k~~~~~~~l~l~~G~~VLDiGCG~G~~a~~~a~~~g--~~v~git~s~~Q~~~a~~~~~~~g~~~~v~~~~~d~~~~  124 (285)
T d1kpga_          47 QIAKIDLALGKLGLQPGMTLLDVGCGWGATMMRAVEKYD--VNVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQF  124 (285)
T ss_dssp             HHHHHHHHHTTTTCCTTCEEEEETCTTSHHHHHHHHHHC--CEEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGGC
T ss_pred             HHHHHHHHHHHcCCCCCCEEEEecCcchHHHHHHHhcCC--cceEEEeccHHHHHHHHHHHHhhhhhhhhHHHHhhhhcc
Confidence            444456777788999999999999999999999999863  7999999999999999999999887 4599999999877


Q ss_pred             CCCCCCCceEEEE
Q 019802          305 DPKDPAYSEVSLI  317 (335)
Q Consensus       305 ~~~~~~fd~V~~I  317 (335)
                      +   .+||.|.+|
T Consensus       125 ~---~~fD~i~si  134 (285)
T d1kpga_         125 D---EPVDRIVSI  134 (285)
T ss_dssp             C---CCCSEEEEE
T ss_pred             c---ccccceeee
Confidence            5   469986554

>d1uwva2 c.66.1.40 (A:75-432) rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: (Uracil-5-)-methyltransferase
domain: rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain
species: Escherichia coli [TaxId: 562]

Probab=98.91  E-value=3.5e-09  Score=97.75  Aligned_cols=90  Identities=20%  Similarity=0.174  Sum_probs=76.2

Q ss_pred             HHHHHcCCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCC----
Q 019802          232 MVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPK----  307 (335)
Q Consensus       232 l~~~~l~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~~~----  307 (335)
                      .+...+++.++++|||++||.|..|..||..   ..+|+|+|.++..++.+++|++..|+.|++++.+|..+....    
T Consensus       203 ~v~~~~~~~~~~~vlDLycG~G~fsl~La~~---~~~V~gvE~~~~ai~~A~~na~~n~i~n~~~~~~~~~~~~~~~~~~  279 (358)
T d1uwva2         203 RALEWLDVQPEDRVLDLFCGMGNFTLPLATQ---AASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWA  279 (358)
T ss_dssp             HHHHHHTCCTTCEEEEESCTTTTTHHHHHTT---SSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCTTSCCSSSGGG
T ss_pred             HHHHhhccCCCceEEEecccccccchhcccc---ccEEEeccCcHHHHHHHHHhHHhcccccceeeecchhhhhhhhhhh
Confidence            3445677889999999999999999999875   468999999999999999999999999999999998774432    


Q ss_pred             CCCCceEEEEEEeccccccc
Q 019802          308 DPAYSEVSLIFCIFTWMIIM  327 (335)
Q Consensus       308 ~~~fd~V~~IllD~~cs~~g  327 (335)
                      ...||   .|++|||=+|.+
T Consensus       280 ~~~~d---~vilDPPR~G~~  296 (358)
T d1uwva2         280 KNGFD---KVLLDPARAGAA  296 (358)
T ss_dssp             TTCCS---EEEECCCTTCCH
T ss_pred             hccCc---eEEeCCCCccHH
Confidence            23455   599999988853

>d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methyltransferase TTHA0928
species: Thermus thermophilus [TaxId: 274]

Probab=98.89  E-value=1.3e-09  Score=90.57  Aligned_cols=79  Identities=18%  Similarity=0.212  Sum_probs=61.5

Q ss_pred             CCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCC----CCCCCCCceE
Q 019802          239 PKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNL----DPKDPAYSEV  314 (335)
Q Consensus       239 ~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~----~~~~~~fd~V  314 (335)
                      ...|.+|||+|||+|..+..++.+   ..+++++|.|+.+++.+++|++.+|+.+ ++...|+...    ......||  
T Consensus        39 ~~~g~~vLDl~~G~G~~~i~a~~~---ga~vv~vD~~~~a~~~~~~N~~~~~~~~-~v~~~~~d~~~~~~~~~~~~fD--  112 (171)
T d1ws6a1          39 YPRRGRFLDPFAGSGAVGLEAASE---GWEAVLVEKDPEAVRLLKENVRRTGLGA-RVVALPVEVFLPEAKAQGERFT--  112 (171)
T ss_dssp             CTTCCEEEEETCSSCHHHHHHHHT---TCEEEEECCCHHHHHHHHHHHHHHTCCC-EEECSCHHHHHHHHHHTTCCEE--
T ss_pred             ccCCCeEEEeccccchhhhhhhhc---cchhhhcccCHHHHhhhhHHHHhhcccc-ceeeeehhcccccccccCCccc--
Confidence            357889999999999999887765   3589999999999999999999999964 5555555432    12334455  


Q ss_pred             EEEEEecccc
Q 019802          315 SLIFCIFTWM  324 (335)
Q Consensus       315 ~~IllD~~cs  324 (335)
                       .|++|||..
T Consensus       113 -~If~DPPY~  121 (171)
T d1ws6a1         113 -VAFMAPPYA  121 (171)
T ss_dssp             -EEEECCCTT
T ss_pred             -eeEEccccc
Confidence             599999964

>d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA2
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.89  E-value=5e-09  Score=94.21  Aligned_cols=87  Identities=16%  Similarity=0.153  Sum_probs=71.8

Q ss_pred             cCchHHHHHHHcCCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCc-EEEEeccCCCC
Q 019802          226 QGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAAN-IEVLHGDFLNL  304 (335)
Q Consensus       226 Qd~~s~l~~~~l~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~n-i~~~~~D~~~~  304 (335)
                      |..--.+++..+++++|++|||+|||.|+.+.++|+..+  .+|+++++|++.++.++++++..|+.+ +.+...|..  
T Consensus        46 q~~k~~~~~~~l~l~~G~~VLDiGCG~G~~~~~~a~~~g--~~v~git~s~~q~~~a~~~~~~~~l~~~v~~~~~d~~--  121 (291)
T d1kpia_          46 QYAKRKLALDKLNLEPGMTLLDIGCGWGSTMRHAVAEYD--VNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWE--  121 (291)
T ss_dssp             HHHHHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHHHC--CEEEEEESCHHHHHHHHHHHHHSCCSSCEEEEECCGG--
T ss_pred             HHHHHHHHHHhcCCCCCCEEEEecCcchHHHHHHHHhcC--cceeeccchHHHHHHHHHHHHhhccchhhhhhhhccc--
Confidence            333345667788999999999999999999999998864  699999999999999999999999865 777777764  


Q ss_pred             CCCCCCCceEEEE
Q 019802          305 DPKDPAYSEVSLI  317 (335)
Q Consensus       305 ~~~~~~fd~V~~I  317 (335)
                       ..+++||.|.+|
T Consensus       122 -~~~~~fD~i~si  133 (291)
T d1kpia_         122 -EFDEPVDRIVSL  133 (291)
T ss_dssp             -GCCCCCSEEEEE
T ss_pred             -ccccccceEeec
Confidence             335679986554

>d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein Ta1320
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.88  E-value=2.5e-09  Score=90.64  Aligned_cols=77  Identities=14%  Similarity=0.181  Sum_probs=62.4

Q ss_pred             HHHcCCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCce
Q 019802          234 AAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSE  313 (335)
Q Consensus       234 ~~~l~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~~~~~~fd~  313 (335)
                      +...+--.|.+|||+|||+|..+..++.+  +..+|+++|+++..++.+++|++     ++.++++|+.+++   ++|| 
T Consensus        41 ~~~~~dl~Gk~VLDlGcGtG~l~i~a~~~--ga~~V~~vDid~~a~~~ar~N~~-----~~~~~~~D~~~l~---~~fD-  109 (197)
T d1ne2a_          41 IYNDGNIGGRSVIDAGTGNGILACGSYLL--GAESVTAFDIDPDAIETAKRNCG-----GVNFMVADVSEIS---GKYD-  109 (197)
T ss_dssp             HHHHTSSBTSEEEEETCTTCHHHHHHHHT--TBSEEEEEESCHHHHHHHHHHCT-----TSEEEECCGGGCC---CCEE-
T ss_pred             HHHcCCCCCCEEEEeCCCCcHHHHHHHHc--CCCcccccccCHHHHHHHHHccc-----cccEEEEehhhcC---Ccce-
Confidence            44455557999999999999998776654  34689999999999999999854     6789999998865   3455 


Q ss_pred             EEEEEEeccc
Q 019802          314 VSLIFCIFTW  323 (335)
Q Consensus       314 V~~IllD~~c  323 (335)
                        .|++|||.
T Consensus       110 --~Vi~NPPf  117 (197)
T d1ne2a_         110 --TWIMNPPF  117 (197)
T ss_dssp             --EEEECCCC
T ss_pred             --EEEeCccc
Confidence              59999996

>d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Methoxy mycolic acid synthase 4, Mma4
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.88  E-value=3.8e-09  Score=94.49  Aligned_cols=83  Identities=16%  Similarity=0.207  Sum_probs=69.2

Q ss_pred             HHHHHHHcCCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCC-cEEEEeccCCCCCCCC
Q 019802          230 SSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAA-NIEVLHGDFLNLDPKD  308 (335)
Q Consensus       230 s~l~~~~l~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~-ni~~~~~D~~~~~~~~  308 (335)
                      -..+...++++||++|||+|||.|+.+.++++..+  .+|+++|+|+.+++.+++++++.|+. ++.+...|..+++   
T Consensus        41 ~~~~~~~l~l~~g~~VLDiGCG~G~~a~~~a~~~g--~~v~gi~ls~~q~~~a~~~~~~~~l~~~~~~~~~d~~~~~---  115 (280)
T d2fk8a1          41 VDLNLDKLDLKPGMTLLDIGCGWGTTMRRAVERFD--VNVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWEDFA---  115 (280)
T ss_dssp             HHHHHTTSCCCTTCEEEEESCTTSHHHHHHHHHHC--CEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGGCC---
T ss_pred             HHHHHHHcCCCCCCEEEEecCCchHHHHHHHHhCc--eeEEEecchHHHHHHHHHHHHhhccccchhhhhhhhhhhc---
Confidence            34556677899999999999999999999998854  58999999999999999999999985 4778888877654   


Q ss_pred             CCCceEEEE
Q 019802          309 PAYSEVSLI  317 (335)
Q Consensus       309 ~~fd~V~~I  317 (335)
                      .+||.|..|
T Consensus       116 ~~fD~i~si  124 (280)
T d2fk8a1         116 EPVDRIVSI  124 (280)
T ss_dssp             CCCSEEEEE
T ss_pred             cchhhhhHh
Confidence            469986443

>d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Putative methyltransferase CAC2371
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=98.87  E-value=1.7e-09  Score=94.42  Aligned_cols=69  Identities=19%  Similarity=0.196  Sum_probs=60.2

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCceE
Q 019802          241 PGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEV  314 (335)
Q Consensus       241 ~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~~~~~~fd~V  314 (335)
                      ++.+|||+|||+|..+..++++   ..+|+|+|+|+.|++.+++++...|. +++++++|+.+++.. ++||.|
T Consensus        37 ~~~~vLDiGCG~G~~~~~l~~~---g~~v~GvD~S~~ml~~A~~~~~~~~~-~v~~~~~d~~~~~~~-~~fD~i  105 (246)
T d1y8ca_          37 VFDDYLDLACGTGNLTENLCPK---FKNTWAVDLSQEMLSEAENKFRSQGL-KPRLACQDISNLNIN-RKFDLI  105 (246)
T ss_dssp             CTTEEEEETCTTSTTHHHHGGG---SSEEEEECSCHHHHHHHHHHHHHTTC-CCEEECCCGGGCCCS-CCEEEE
T ss_pred             CCCeEEEEeCcCCHHHHHHHHh---CCccEeeccchhhhhhccccccccCc-cceeeccchhhhccc-cccccc
Confidence            4579999999999999999986   35899999999999999999999887 699999999998754 468754

>d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap (Guanine N-7) methyltransferase
domain: mRNA cap (Guanine N-7) methyltransferase
species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]

Probab=98.87  E-value=3.3e-09  Score=93.14  Aligned_cols=75  Identities=13%  Similarity=0.145  Sum_probs=62.7

Q ss_pred             CCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCC-cEEEEeccCCCCCC-CCCCCceEE
Q 019802          239 PKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAA-NIEVLHGDFLNLDP-KDPAYSEVS  315 (335)
Q Consensus       239 ~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~-ni~~~~~D~~~~~~-~~~~fd~V~  315 (335)
                      .++|.+|||+|||+|+.+..++..  +.++|+|+|+|+.+++.++++.+..+.. ++.+.++|+...+. ....||.|.
T Consensus        22 ~~~~~~VLDlGCG~G~~~~~~~~~--~~~~v~GiD~S~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~~~fD~V~   98 (252)
T d1ri5a_          22 TKRGDSVLDLGCGKGGDLLKYERA--GIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHMDLGKEFDVIS   98 (252)
T ss_dssp             CCTTCEEEEETCTTTTTHHHHHHH--TCSEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSCCCCSSCEEEEE
T ss_pred             CCCcCEEEEecccCcHHHHHHHHc--CCCeEEEecCCHHHHHHHHHHHHhcCCCcceEEEEcchhhhcccccccceEEE
Confidence            457899999999999999988876  3468999999999999999999887764 69999999977665 355687643

>d2fhpa1 c.66.1.46 (A:1-182) Putative methylase EF2452 {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methylase EF2452
species: Enterococcus faecalis [TaxId: 1351]

Probab=98.86  E-value=1.3e-09  Score=91.47  Aligned_cols=79  Identities=19%  Similarity=0.214  Sum_probs=66.9

Q ss_pred             CCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCC-cEEEEeccCCCCC----CCCCCCceE
Q 019802          240 KPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAA-NIEVLHGDFLNLD----PKDPAYSEV  314 (335)
Q Consensus       240 ~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~-ni~~~~~D~~~~~----~~~~~fd~V  314 (335)
                      ..|.+|||+|||+|+.+..++.+  +...|+++|.++..++.+++|++.++.. +++++++|+.+.-    .....||  
T Consensus        40 ~~~~~vLDlfaGsG~~g~ea~sr--Ga~~v~~ve~~~~a~~~~~~N~~~~~~~~~~~i~~~D~~~~l~~~~~~~~~fD--  115 (182)
T d2fhpa1          40 FDGGMALDLYSGSGGLAIEAVSR--GMDKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRALEQFYEEKLQFD--  115 (182)
T ss_dssp             CSSCEEEETTCTTCHHHHHHHHT--TCSEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHHTTCCEE--
T ss_pred             cCCCEEEEcccccccccceeeec--chhHHHHHHHHHHHHHHHHHHhhhhhcccccccccccchhhhhhhcccCCCcc--
Confidence            47899999999999999988886  4568999999999999999999999986 6999999997632    2334566  


Q ss_pred             EEEEEeccc
Q 019802          315 SLIFCIFTW  323 (335)
Q Consensus       315 ~~IllD~~c  323 (335)
                       .|++|||.
T Consensus       116 -lIflDPPY  123 (182)
T d2fhpa1         116 -LVLLDPPY  123 (182)
T ss_dssp             -EEEECCCG
T ss_pred             -eEEechhh
Confidence             59999996

>d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ribosomal protein L11 methyltransferase PrmA
domain: PrmA-like protein TTHA0656 (TT0836)
species: Thermus thermophilus [TaxId: 274]

Probab=98.86  E-value=1.2e-09  Score=96.39  Aligned_cols=84  Identities=20%  Similarity=0.267  Sum_probs=66.0

Q ss_pred             chHHHHHHHcC--CCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCC
Q 019802          228 KASSMVAAALA--PKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLD  305 (335)
Q Consensus       228 ~~s~l~~~~l~--~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~  305 (335)
                      +..+++...+.  .++|++|||+|||+|..+..++.+ +  .+|+|+|+|+.+++.+++|+++.|+. +.++++|+.+..
T Consensus       105 ~TT~l~l~~l~~~~~~g~~VLDiGcGsG~l~i~aa~~-g--~~V~gvDis~~av~~A~~na~~n~~~-~~~~~~d~~~~~  180 (254)
T d2nxca1         105 ETTRLALKALARHLRPGDKVLDLGTGSGVLAIAAEKL-G--GKALGVDIDPMVLPQAEANAKRNGVR-PRFLEGSLEAAL  180 (254)
T ss_dssp             HHHHHHHHHHHHHCCTTCEEEEETCTTSHHHHHHHHT-T--CEEEEEESCGGGHHHHHHHHHHTTCC-CEEEESCHHHHG
T ss_pred             chhhHHHHHHHhhcCccCEEEEcccchhHHHHHHHhc-C--CEEEEEECChHHHHHHHHHHHHcCCc-eeEEeccccccc
Confidence            34555555554  578999999999999999887764 3  68999999999999999999999995 678899886643


Q ss_pred             CCCCCCceEEE
Q 019802          306 PKDPAYSEVSL  316 (335)
Q Consensus       306 ~~~~~fd~V~~  316 (335)
                       .+.+||.|.+
T Consensus       181 -~~~~fD~V~a  190 (254)
T d2nxca1         181 -PFGPFDLLVA  190 (254)
T ss_dssp             -GGCCEEEEEE
T ss_pred             -cccccchhhh
Confidence             3456876443

>d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: BC2162-like
domain: Methyltransferase BC2162
species: Bacillus cereus [TaxId: 1396]

Probab=98.84  E-value=4.2e-09  Score=94.18  Aligned_cols=81  Identities=16%  Similarity=0.212  Sum_probs=68.7

Q ss_pred             HHHHHcCCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCC
Q 019802          232 MVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAY  311 (335)
Q Consensus       232 l~~~~l~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~~~~~~f  311 (335)
                      ++-.+..+.++.+|||+|||+|..+..++...+..++|+++|+|+.+++.++++++..+. ++++.++|+.++++.+ +|
T Consensus        18 l~~~~~~~~~~~~ILDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~-~~~f~~~d~~~~~~~~-~f   95 (281)
T d2gh1a1          18 LVNTVWKITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPY-DSEFLEGDATEIELND-KY   95 (281)
T ss_dssp             HHHTTSCCCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEECCHHHHHHHHHHHHSSSS-EEEEEESCTTTCCCSS-CE
T ss_pred             HHHHHhccCCcCEEEEecCcCCHHHHHHHHhCCCCCEEEEEecchhHhhhhhcccccccc-cccccccccccccccC-Cc
Confidence            333344567788999999999999999999877678999999999999999999999887 7999999999987653 57


Q ss_pred             ceE
Q 019802          312 SEV  314 (335)
Q Consensus       312 d~V  314 (335)
                      |.|
T Consensus        96 D~v   98 (281)
T d2gh1a1          96 DIA   98 (281)
T ss_dssp             EEE
T ss_pred             eEE
Confidence            753

>d1wg8a2 c.66.1.23 (A:5-108,A:207-284) TM0872, methyltransferase domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: MraW-like putative methyltransferases
domain: TM0872, methyltransferase domain
species: Thermus thermophilus [TaxId: 274]

Probab=98.83  E-value=2.8e-09  Score=89.25  Aligned_cols=89  Identities=19%  Similarity=0.247  Sum_probs=72.8

Q ss_pred             HHHHcCCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCC--CCC
Q 019802          233 VAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPK--DPA  310 (335)
Q Consensus       233 ~~~~l~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~~~--~~~  310 (335)
                      +...|.+++|+.++|+++|.||.|..+.+.   +|+|+|+|.++.+++.+++.    -.+++.+++.++.++...  ...
T Consensus        10 vl~~l~~~~g~~~vD~T~G~GGhs~~iL~~---~~~viaiD~D~~ai~~a~~~----~~~~~~~~~~~f~~~~~~l~~~~   82 (182)
T d1wg8a2          10 ALDLLAVRPGGVYVDATLGGAGHARGILER---GGRVIGLDQDPEAVARAKGL----HLPGLTVVQGNFRHLKRHLAALG   82 (182)
T ss_dssp             HHHHHTCCTTCEEEETTCTTSHHHHHHHHT---TCEEEEEESCHHHHHHHHHT----CCTTEEEEESCGGGHHHHHHHTT
T ss_pred             HHHhcCCCCCCEEEEeCCCCcHHHHHHhcc---cCcEEEEhhhhhHHHHHhhc----cccceeEeehHHHHHHHHHHHcC
Confidence            345678999999999999999999988774   68999999999999887753    346799999999887632  223


Q ss_pred             CceEEEEEEecccccccc
Q 019802          311 YSEVSLIFCIFTWMIIMF  328 (335)
Q Consensus       311 fd~V~~IllD~~cs~~g~  328 (335)
                      .+.|+.|++|.++|....
T Consensus        83 ~~~vdgIl~DLGvSs~ql  100 (182)
T d1wg8a2          83 VERVDGILADLGVSSFHL  100 (182)
T ss_dssp             CSCEEEEEEECSCCHHHH
T ss_pred             CCccCEEEEEccCCHHHh
Confidence            567899999999998764

>d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein HI0319 (YecO)
domain: Hypothetical protein HI0319 (YecO)
species: Haemophilus influenzae [TaxId: 727]

Probab=98.83  E-value=5.5e-09  Score=89.97  Aligned_cols=68  Identities=18%  Similarity=0.213  Sum_probs=58.7

Q ss_pred             CCCCCEEEEEcCCCchHHHHHHHHcC-CCeEEEEEeCCHHHHHHHHHHHHHhCC-CcEEEEeccCCCCCC
Q 019802          239 PKPGWKVLDACSAPGNKTVHLAALMK-GKGKIVACELNKERVRRLKDTIKLSGA-ANIEVLHGDFLNLDP  306 (335)
Q Consensus       239 ~~~g~~VLD~cagpG~kt~~la~~~~-~~g~i~a~D~~~~rl~~~~~~~~~~g~-~ni~~~~~D~~~~~~  306 (335)
                      .+|+.+|||+|||+|..+..|++... +..+|+++|+|+.|++.++++++..+. .++++.++|+.+++.
T Consensus        37 ~~~~~~vLDlGCGtG~~~~~l~~~~~~~~~~v~giD~S~~ml~~A~~~~~~~~~~~~~~~~~~d~~~~~~  106 (225)
T d1im8a_          37 VTADSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEI  106 (225)
T ss_dssp             CCTTCEEEEESCTTCHHHHHHHHTCCCSSCEEEEECSCHHHHHHHHHHHHTSCCSSCEEEECSCTTTCCC
T ss_pred             cCCCCEEEEeccchhhHHHHHHHhhcCCCCceEEeCCCHHHHHHHHHHhHhhcccchhhhccchhhcccc
Confidence            46789999999999999999998753 567999999999999999999998775 358888999877654

>d2ifta1 c.66.1.46 (A:11-193) Putative methylase HI0767 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methylase HI0767
species: Haemophilus influenzae [TaxId: 727]

Probab=98.80  E-value=6.4e-09  Score=87.15  Aligned_cols=80  Identities=18%  Similarity=0.258  Sum_probs=64.7

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCc--EEEEeccCCCCCC---CCCCCceEE
Q 019802          241 PGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAAN--IEVLHGDFLNLDP---KDPAYSEVS  315 (335)
Q Consensus       241 ~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~n--i~~~~~D~~~~~~---~~~~fd~V~  315 (335)
                      .|.+|||+|||+|..++..+.+  +...++.+|.+...++.+++|++.+++.+  ..+.+.|+.+...   ....|   |
T Consensus        43 ~~~~vLDlFaGsG~~glEalSR--GA~~v~fVE~~~~a~~~ik~Ni~~l~~~~~~~~~~~~d~~~~l~~~~~~~~f---D  117 (183)
T d2ifta1          43 HQSECLDGFAGSGSLGFEALSR--QAKKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFLKQPQNQPHF---D  117 (183)
T ss_dssp             TTCEEEETTCTTCHHHHHHHHT--TCSEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHTTSCCSSCCE---E
T ss_pred             ccceEeecccCccceeeeeeee--cceeeEEeecccchhhhHhhHHhhhcccccccccccccccccccccccCCcc---c
Confidence            5789999999999999999887  45699999999999999999999999854  6777777654322   22334   5


Q ss_pred             EEEEeccccc
Q 019802          316 LIFCIFTWMI  325 (335)
Q Consensus       316 ~IllD~~cs~  325 (335)
                      .|++|||...
T Consensus       118 lIFlDPPY~~  127 (183)
T d2ifta1         118 VVFLDPPFHF  127 (183)
T ss_dssp             EEEECCCSSS
T ss_pred             EEEechhHhh
Confidence            6999999753

>d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA methyltransferase RlmA
domain: rRNA methyltransferase RlmA
species: Escherichia coli [TaxId: 562]

Probab=98.79  E-value=8.9e-09  Score=91.38  Aligned_cols=72  Identities=13%  Similarity=0.082  Sum_probs=62.8

Q ss_pred             CCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCceEEE
Q 019802          239 PKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVSL  316 (335)
Q Consensus       239 ~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~~~~~~fd~V~~  316 (335)
                      +.++.+|||+|||+|..+.++++.. ++..++++|+|+.+++.++++     .+++.+.++|+.+++..+++||.|.+
T Consensus        82 ~~~~~~iLDiGcG~G~~~~~l~~~~-~~~~~~giD~s~~~~~~a~~~-----~~~~~~~~~d~~~l~~~~~sfD~v~~  153 (268)
T d1p91a_          82 DDKATAVLDIGCGEGYYTHAFADAL-PEITTFGLDVSKVAIKAAAKR-----YPQVTFCVASSHRLPFSDTSMDAIIR  153 (268)
T ss_dssp             CTTCCEEEEETCTTSTTHHHHHHTC-TTSEEEEEESCHHHHHHHHHH-----CTTSEEEECCTTSCSBCTTCEEEEEE
T ss_pred             CCCCCEEEEeCCCCcHHHHHHHHHC-CCCEEEEecchHhhhhhhhcc-----cccccceeeehhhccCCCCCEEEEee
Confidence            5678899999999999999999985 457999999999999988765     34789999999999999999997644

>d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Pseudomonas syringae [TaxId: 317]

Probab=98.74  E-value=3.4e-09  Score=88.43  Aligned_cols=75  Identities=23%  Similarity=0.271  Sum_probs=61.5

Q ss_pred             HcCCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCC------------CcEEEEeccCCC
Q 019802          236 ALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGA------------ANIEVLHGDFLN  303 (335)
Q Consensus       236 ~l~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~------------~ni~~~~~D~~~  303 (335)
                      .|.+.||.+|||+|||+|..+..||+.   ..+|+++|+|+.+++.++++++..+.            .++.+.++|+.+
T Consensus        15 ~l~~~~~~rvLd~GCG~G~~a~~la~~---G~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~   91 (201)
T d1pjza_          15 SLNVVPGARVLVPLCGKSQDMSWLSGQ---GYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFA   91 (201)
T ss_dssp             HHCCCTTCEEEETTTCCSHHHHHHHHH---CCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSS
T ss_pred             HcCCCCCCEEEEecCcCCHHHHHHHHc---CCceEeecccHHHHHHHHHHhccccchhhhhhhhhccccccceecccccc
Confidence            467899999999999999999999987   47999999999999999999875543            235788888888


Q ss_pred             CCCC-CCCCce
Q 019802          304 LDPK-DPAYSE  313 (335)
Q Consensus       304 ~~~~-~~~fd~  313 (335)
                      +++. ...||.
T Consensus        92 l~~~~~~~~D~  102 (201)
T d1pjza_          92 LTARDIGHCAA  102 (201)
T ss_dssp             STHHHHHSEEE
T ss_pred             cccccccceeE
Confidence            7753 234664

>d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical methyltransferase TM1389
species: Thermotoga maritima [TaxId: 2336]

Probab=98.68  E-value=1.2e-08  Score=88.14  Aligned_cols=66  Identities=23%  Similarity=0.278  Sum_probs=55.7

Q ss_pred             CCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCceE
Q 019802          240 KPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEV  314 (335)
Q Consensus       240 ~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~~~~~~fd~V  314 (335)
                      .++.+|||+|||+|..+..+++.   ..+|+++|+|+.+++.++++    +..+  ++++|+.+++..+++||.|
T Consensus        41 ~~~~~vLDiGcG~G~~~~~l~~~---~~~v~giD~s~~~l~~a~~~----~~~~--~~~~~~~~l~~~~~~fD~i  106 (246)
T d2avna1          41 KNPCRVLDLGGGTGKWSLFLQER---GFEVVLVDPSKEMLEVAREK----GVKN--VVEAKAEDLPFPSGAFEAV  106 (246)
T ss_dssp             CSCCEEEEETCTTCHHHHHHHTT---TCEEEEEESCHHHHHHHHHH----TCSC--EEECCTTSCCSCTTCEEEE
T ss_pred             CCCCEEEEECCCCchhccccccc---ceEEEEeecccccccccccc----cccc--cccccccccccccccccce
Confidence            46789999999999999999875   46899999999999999876    3332  5789999999888888864

>d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810)
species: Leishmania major [TaxId: 5664]

Probab=98.68  E-value=3.2e-08  Score=87.02  Aligned_cols=76  Identities=16%  Similarity=0.117  Sum_probs=63.9

Q ss_pred             HHcCCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCceE
Q 019802          235 AALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEV  314 (335)
Q Consensus       235 ~~l~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~~~~~~fd~V  314 (335)
                      ..+...++.+|||+|||+|..|.+++....  ..|+++|+++.+++.+++++.  +.+++++.++|+.++++.+++||.|
T Consensus        87 ~~l~~~~~~~vLD~GcG~G~~t~~ll~~~~--~~v~~vD~s~~~l~~a~~~~~--~~~~~~~~~~d~~~~~~~~~~fD~I  162 (254)
T d1xtpa_          87 ASLPGHGTSRALDCGAGIGRITKNLLTKLY--ATTDLLEPVKHMLEEAKRELA--GMPVGKFILASMETATLPPNTYDLI  162 (254)
T ss_dssp             HTSTTCCCSEEEEETCTTTHHHHHTHHHHC--SEEEEEESCHHHHHHHHHHTT--TSSEEEEEESCGGGCCCCSSCEEEE
T ss_pred             hhCCCCCCCeEEEecccCChhhHHHHhhcC--ceEEEEcCCHHHHHhhhcccc--ccccceeEEccccccccCCCccceE
Confidence            345566788999999999999999887643  489999999999999998876  4456899999999999888888864

>d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Guanidinoacetate methyltransferase
domain: Guanidinoacetate methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.62  E-value=2e-08  Score=86.84  Aligned_cols=83  Identities=14%  Similarity=0.050  Sum_probs=66.0

Q ss_pred             CCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCC--CCCCCCCceEEEE
Q 019802          240 KPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNL--DPKDPAYSEVSLI  317 (335)
Q Consensus       240 ~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~--~~~~~~fd~V~~I  317 (335)
                      .+|++|||+|||+|..+..+++.  ...+|+++|+|+.+++.+++++++.+. ++.++..|+...  +..+.+||.   |
T Consensus        52 ~~g~~VLdIGcG~G~~a~~~a~~--~~~~v~~id~s~~~~~~a~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~fD~---i  125 (229)
T d1zx0a1          52 SKGGRVLEVGFGMAIAASKVQEA--PIDEHWIIECNDGVFQRLRDWAPRQTH-KVIPLKGLWEDVAPTLPDGHFDG---I  125 (229)
T ss_dssp             TTCEEEEEECCTTSHHHHHHHTS--CEEEEEEEECCHHHHHHHHHHGGGCSS-EEEEEESCHHHHGGGSCTTCEEE---E
T ss_pred             cCCCeEEEeeccchHHHHHHHHc--CCCeEEEeCCCHHHHHHHHHHhhhccc-ccccccccccccccccccccccc---e
Confidence            57899999999999999999875  236899999999999999999887665 577888887654  334566764   8


Q ss_pred             EEecccccccc
Q 019802          318 FCIFTWMIIMF  328 (335)
Q Consensus       318 llD~~cs~~g~  328 (335)
                      ++|+..+..+.
T Consensus       126 ~fD~~~~~~~~  136 (229)
T d1zx0a1         126 LYDTYPLSEET  136 (229)
T ss_dssp             EECCCCCBGGG
T ss_pred             eeccccccccc
Confidence            88977665544

>d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 3, PRMT3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.59  E-value=5.8e-08  Score=87.73  Aligned_cols=76  Identities=16%  Similarity=0.156  Sum_probs=60.0

Q ss_pred             HcCCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCC-CcEEEEeccCCCCCCCCCCCceE
Q 019802          236 ALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGA-ANIEVLHGDFLNLDPKDPAYSEV  314 (335)
Q Consensus       236 ~l~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~-~ni~~~~~D~~~~~~~~~~fd~V  314 (335)
                      .....+|.+|||+|||+|..+..+|+.  +..+|+|+|.++.+.. ++++....|. .+|.++++|+.+++....+||.|
T Consensus        30 ~~~~~~~~~VLDiGcG~G~lsl~aa~~--Ga~~V~aid~s~~~~~-a~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~D~I  106 (311)
T d2fyta1          30 NPHIFKDKVVLDVGCGTGILSMFAAKA--GAKKVLGVDQSEILYQ-AMDIIRLNKLEDTITLIKGKIEEVHLPVEKVDVI  106 (311)
T ss_dssp             CGGGTTTCEEEEETCTTSHHHHHHHHT--TCSEEEEEESSTHHHH-HHHHHHHTTCTTTEEEEESCTTTSCCSCSCEEEE
T ss_pred             ccccCCcCEEEEECCCCCHHHHHHHHc--CCCEEEEEeCHHHHHH-HHHHHHHhCCCccceEEEeeHHHhcCccccceEE
Confidence            345568999999999999999988876  3358999999998765 5555555554 57999999999998776677753

>d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.59  E-value=3e-08  Score=90.52  Aligned_cols=86  Identities=17%  Similarity=0.147  Sum_probs=68.5

Q ss_pred             HHHHcCCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHh-------C--CCcEEEEeccCCC
Q 019802          233 VAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLS-------G--AANIEVLHGDFLN  303 (335)
Q Consensus       233 ~~~~l~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~-------g--~~ni~~~~~D~~~  303 (335)
                      +...++++++++|||+|||.|..+.++|...+ ..+++++|+++.+++.++++.+..       |  ..+|+++++|+.+
T Consensus       143 ~~~~~~l~~~~~vlD~GcG~G~~~~~~a~~~~-~~~~~Gid~s~~~~~~a~~~~~~~~~~~~~~g~~~~~i~~~~gd~~~  221 (328)
T d1nw3a_         143 MIDEIKMTDDDLFVDLGSGVGQVVLQVAAATN-CKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGDFLS  221 (328)
T ss_dssp             HHHHSCCCTTCEEEEETCTTSHHHHHHHHHCC-CSEEEEEECSHHHHHHHHHHHHHHHHHHHHHTCCCCCEEEEECCTTS
T ss_pred             HHHHcCCCCCCEEEEcCCCCCHHHHHHHHHhC-CCeEEEEeCCHHHHHHHHHHHHHHHHHhhhccccCCceEEEECcccc
Confidence            44567899999999999999999999998754 468999999999999998876653       3  3479999999998


Q ss_pred             CCCCCCCCceEEEEEEe
Q 019802          304 LDPKDPAYSEVSLIFCI  320 (335)
Q Consensus       304 ~~~~~~~fd~V~~IllD  320 (335)
                      ++..+..|| ++.|++.
T Consensus       222 ~~~~~~~~~-advi~~~  237 (328)
T d1nw3a_         222 EEWRERIAN-TSVIFVN  237 (328)
T ss_dssp             HHHHHHHHH-CSEEEEC
T ss_pred             cccccccCc-ceEEEEc
Confidence            876554444 3446654

>d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing protein METT10D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Methyltransferase 10 domain
domain: Methyltransferase 10 domain containing protein METT10D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.54  E-value=2.3e-07  Score=81.29  Aligned_cols=81  Identities=14%  Similarity=0.100  Sum_probs=64.6

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCc-EEEEeccCCCCCC------CCCCCce
Q 019802          241 PGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAAN-IEVLHGDFLNLDP------KDPAYSE  313 (335)
Q Consensus       241 ~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~n-i~~~~~D~~~~~~------~~~~fd~  313 (335)
                      +.-+|||+|||+|..+..|+.... +.+++|+|+++..++.+++|+++.++.+ +.+.+.+......      .+..||.
T Consensus        61 ~~~~~LDiGtGsg~I~~~l~~~~~-~~~~~~~Di~~~al~~A~~N~~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~fD~  139 (250)
T d2h00a1          61 TLRRGIDIGTGASCIYPLLGATLN-GWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQKTLLMDALKEESEIIYDF  139 (250)
T ss_dssp             CCCEEEEESCTTTTHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTCSSTTTSTTCCSCCBSE
T ss_pred             ccceEEEeCCCchHHHHHHHHhCC-CccccceecCHHHHHHHHHHHHHhCCCcceeeeeeccHHhhhhhhhhcccCceeE
Confidence            345899999999999999999875 5899999999999999999999999865 7777765433221      2345774


Q ss_pred             EEEEEEeccccc
Q 019802          314 VSLIFCIFTWMI  325 (335)
Q Consensus       314 V~~IllD~~cs~  325 (335)
                         |+++||--.
T Consensus       140 ---ivsNPPY~~  148 (250)
T d2h00a1         140 ---CMCNPPFFA  148 (250)
T ss_dssp             ---EEECCCCC-
T ss_pred             ---EEecCcccc
Confidence               899999754

>d1qama_ c.66.1.24 (A:) rRNA adenine dimethylase {Bacillus subtilis, Ermc' [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: rRNA adenine dimethylase
species: Bacillus subtilis, Ermc' [TaxId: 1423]

Probab=98.54  E-value=1.9e-07  Score=81.09  Aligned_cols=87  Identities=15%  Similarity=0.191  Sum_probs=69.6

Q ss_pred             HHHHHHHcCCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCC
Q 019802          230 SSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDP  309 (335)
Q Consensus       230 s~l~~~~l~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~~~~~  309 (335)
                      ..-++..+++.+++.||++|+|+|..|..|++.   ..+|+|+|+++..++.++++..  +.+|++++++|+.+++....
T Consensus        10 ~~~iv~~~~~~~~d~VlEIGpG~G~LT~~Ll~~---~~~v~avE~D~~l~~~l~~~~~--~~~n~~i~~~D~l~~~~~~~   84 (235)
T d1qama_          10 IDKIMTNIRLNEHDNIFEIGSGKGHFTLELVQR---CNFVTAIEIDHKLCKTTENKLV--DHDNFQVLNKDILQFKFPKN   84 (235)
T ss_dssp             HHHHHTTCCCCTTCEEEEECCTTSHHHHHHHHH---SSEEEEECSCHHHHHHHHHHTT--TCCSEEEECCCGGGCCCCSS
T ss_pred             HHHHHHhcCCCCCCeEEEECCCchHHHHHHHhC---cCceEEEeeccchHHHHHHHhh--cccchhhhhhhhhhcccccc
Confidence            445667788899999999999999999999987   3589999999999999998765  45689999999999876432


Q ss_pred             CCceEEEEEEecccc
Q 019802          310 AYSEVSLIFCIFTWM  324 (335)
Q Consensus       310 ~fd~V~~IllD~~cs  324 (335)
                      ...   .|+-+.|..
T Consensus        85 ~~~---~vv~NLPYn   96 (235)
T d1qama_          85 QSY---KIFGNIPYN   96 (235)
T ss_dssp             CCC---EEEEECCGG
T ss_pred             ccc---eeeeeehhh
Confidence            221   255576654

>d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Catechol O-methyltransferase, COMT
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.53  E-value=4.7e-08  Score=83.78  Aligned_cols=95  Identities=16%  Similarity=0.279  Sum_probs=74.7

Q ss_pred             chHHHHHHHcCCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCc-EEEEeccCCCCCC
Q 019802          228 KASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAAN-IEVLHGDFLNLDP  306 (335)
Q Consensus       228 ~~s~l~~~~l~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~n-i~~~~~D~~~~~~  306 (335)
                      ...+++..++......+|||+|+|.|.-|..|++.++.+|+|+++|+++.+++.+++++++.|+.+ |+++.+|+.+.-+
T Consensus        43 ~~G~lL~~lv~~~kpk~ILEiGt~~G~Sti~la~al~~~g~v~sid~~~~~~~~a~~~~~~~gl~~~i~l~~Gd~~e~l~  122 (214)
T d2cl5a1          43 AKGQIMDAVIREYSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEMNPDYAAITQQMLNFAGLQDKVTILNGASQDLIP  122 (214)
T ss_dssp             HHHHHHHHHHHHHCCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHGG
T ss_pred             HHHHHHHHHHHhhCCCEEEEEccCchhHHHHHHHhCCCccEEEEEeccHHHHHHHHHHHHHcCCCccceeeecccccccc
Confidence            334455555544456799999999999999999988888999999999999999999999999964 9999999987532


Q ss_pred             C---CCCCceEEEEEEecc
Q 019802          307 K---DPAYSEVSLIFCIFT  322 (335)
Q Consensus       307 ~---~~~fd~V~~IllD~~  322 (335)
                      .   ......+|.|++|..
T Consensus       123 ~l~~~~~~~~~D~ifiD~~  141 (214)
T d2cl5a1         123 QLKKKYDVDTLDMVFLDHW  141 (214)
T ss_dssp             GHHHHSCCCCEEEEEECSC
T ss_pred             chhhcccccccceeeeccc
Confidence            1   112234567999943

>d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Arginine methyltransferase, HMT1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.53  E-value=1.1e-07  Score=86.48  Aligned_cols=76  Identities=17%  Similarity=0.249  Sum_probs=63.0

Q ss_pred             CCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCC-cEEEEeccCCCCCCCCCCCceEEE
Q 019802          238 APKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAA-NIEVLHGDFLNLDPKDPAYSEVSL  316 (335)
Q Consensus       238 ~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~-ni~~~~~D~~~~~~~~~~fd~V~~  316 (335)
                      ...+|.+|||+|||+|..+..+++.  +..+|+|+|.++ +++.++++.+..|.. +|+++++|..+++.++++||.|.+
T Consensus        35 ~~~~~~~VLDlGcGtG~ls~~aa~~--Ga~~V~avd~s~-~~~~a~~~~~~~~~~~~i~~i~~~~~~l~~~~~~~D~i~s  111 (328)
T d1g6q1_          35 DLFKDKIVLDVGCGTGILSMFAAKH--GAKHVIGVDMSS-IIEMAKELVELNGFSDKITLLRGKLEDVHLPFPKVDIIIS  111 (328)
T ss_dssp             HHHTTCEEEEETCTTSHHHHHHHHT--CCSEEEEEESST-HHHHHHHHHHHTTCTTTEEEEESCTTTSCCSSSCEEEEEE
T ss_pred             ccCCcCEEEEeCCCCCHHHHHHHHh--CCCEEEEEeCCH-HHHHHHHHHHHhCccccceEEEeehhhccCcccceeEEEE
Confidence            3457999999999999999888775  345899999995 788999999998874 599999999999877777875433

>d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.52  E-value=7.5e-08  Score=83.02  Aligned_cols=78  Identities=15%  Similarity=0.173  Sum_probs=62.8

Q ss_pred             HHHHcCCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhC-----------------CCcEE
Q 019802          233 VAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSG-----------------AANIE  295 (335)
Q Consensus       233 ~~~~l~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g-----------------~~ni~  295 (335)
                      +..++.+.+|.+|||+|||.|..+..||+.   ..+|+|+|+|+.+++.++++....+                 ..++.
T Consensus        37 ~~~~l~~~~~~rvLd~GCG~G~~a~~LA~~---G~~V~gvD~S~~ai~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  113 (229)
T d2bzga1          37 LDTFLKGKSGLRVFFPLCGKAVEMKWFADR---GHSVVGVEISELGIQEFFTEQNLSYSEEPITEIPGTKVFKSSSGNIS  113 (229)
T ss_dssp             HHHHHTTCCSCEEEETTCTTCTHHHHHHHT---TCEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEE
T ss_pred             HHHhcCCCCCCEEEEeCCCCcHHHHHHHhC---CCcEEEEeCCHHHHHHHHHHhhccccccchhcccccceeeecCCcEE
Confidence            445677889999999999999999999986   4689999999999999988765321                 13689


Q ss_pred             EEeccCCCCCCC-CCCCce
Q 019802          296 VLHGDFLNLDPK-DPAYSE  313 (335)
Q Consensus       296 ~~~~D~~~~~~~-~~~fd~  313 (335)
                      +.++|+.++++. ...||.
T Consensus       114 ~~~~d~~~l~~~~~~~fd~  132 (229)
T d2bzga1         114 LYCCSIFDLPRTNIGKFDM  132 (229)
T ss_dssp             EEESCGGGGGGSCCCCEEE
T ss_pred             EEEcchhhccccccCceeE
Confidence            999999888753 455663

>d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Possible histamine N-methyltransferase TM1293
species: Thermotoga maritima [TaxId: 2336]

Probab=98.48  E-value=6.7e-08  Score=81.67  Aligned_cols=63  Identities=19%  Similarity=0.202  Sum_probs=52.9

Q ss_pred             CCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCceEEE
Q 019802          240 KPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVSL  316 (335)
Q Consensus       240 ~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~~~~~~fd~V~~  316 (335)
                      .|+++|||+|||+|..+..++       +++++|+|+.+++.++++       ++.++++|+.+++..+++||.|.+
T Consensus        35 ~~~~~vLDiGcG~G~~~~~~~-------~~~giD~s~~~~~~a~~~-------~~~~~~~d~~~l~~~~~~fD~I~~   97 (208)
T d1vlma_          35 LPEGRGVEIGVGTGRFAVPLK-------IKIGVEPSERMAEIARKR-------GVFVLKGTAENLPLKDESFDFALM   97 (208)
T ss_dssp             CCSSCEEEETCTTSTTHHHHT-------CCEEEESCHHHHHHHHHT-------TCEEEECBTTBCCSCTTCEEEEEE
T ss_pred             CCCCeEEEECCCCcccccccc-------eEEEEeCChhhccccccc-------cccccccccccccccccccccccc
Confidence            457789999999999877663       368999999999998874       689999999999988888987543

>d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N5-glutamine methyltransferase, HemK
domain: N5-glutamine methyltransferase, HemK
species: Thermotoga maritima [TaxId: 2336]

Probab=98.48  E-value=3.3e-07  Score=81.09  Aligned_cols=82  Identities=17%  Similarity=0.191  Sum_probs=67.1

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCc-EEEEeccCCCCCC-CCCCCceEEEEE
Q 019802          241 PGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAAN-IEVLHGDFLNLDP-KDPAYSEVSLIF  318 (335)
Q Consensus       241 ~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~n-i~~~~~D~~~~~~-~~~~fd~V~~Il  318 (335)
                      +..+|+|+|||+|..++.+++.  ++.+|+|+|+|+..++.+++|++++|+.+ +.+..+|..+... ....||   .|+
T Consensus       110 ~~~~vld~g~GsG~i~~~la~~--~~~~v~a~Dis~~Al~~A~~Na~~~~~~~~~~i~~~~~~~~~~~~~~~fD---lIV  184 (271)
T d1nv8a_         110 GIKTVADIGTGSGAIGVSVAKF--SDAIVFATDVSSKAVEIARKNAERHGVSDRFFVRKGEFLEPFKEKFASIE---MIL  184 (271)
T ss_dssp             TCCEEEEESCTTSHHHHHHHHH--SSCEEEEEESCHHHHHHHHHHHHHTTCTTSEEEEESSTTGGGGGGTTTCC---EEE
T ss_pred             cccEEEEeeeeeehhhhhhhhc--ccceeeechhhhhHHHHHHHHHHHcCCCceeEEeecccccccccccCccc---EEE
Confidence            3458999999999999998865  46899999999999999999999999975 7778888877543 234566   489


Q ss_pred             Eeccccccc
Q 019802          319 CIFTWMIIM  327 (335)
Q Consensus       319 lD~~cs~~g  327 (335)
                      .+||.-.+.
T Consensus       185 sNPPYI~~~  193 (271)
T d1nv8a_         185 SNPPYVKSS  193 (271)
T ss_dssp             ECCCCBCGG
T ss_pred             EcccccCcc
Confidence            999976543

>d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 1, PRMT1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.47  E-value=1.5e-07  Score=85.24  Aligned_cols=76  Identities=14%  Similarity=0.094  Sum_probs=61.3

Q ss_pred             CCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCc-EEEEeccCCCCCCCCCCCceEEEE
Q 019802          239 PKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAAN-IEVLHGDFLNLDPKDPAYSEVSLI  317 (335)
Q Consensus       239 ~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~n-i~~~~~D~~~~~~~~~~fd~V~~I  317 (335)
                      ..+|.+|||+|||+|..+..+|+. + ..+|+|+|.++. ...++++.+..|+.+ |.++++|+.+++...++||.   |
T Consensus        31 ~~~~~~VLDiGcG~G~ls~~aa~~-G-a~~V~avd~s~~-~~~a~~~~~~n~~~~~v~~~~~~~~~~~~~~~~~D~---i  104 (316)
T d1oria_          31 LFKDKVVLDVGSGTGILCMFAAKA-G-ARKVIGIECSSI-SDYAVKIVKANKLDHVVTIIKGKVEEVELPVEKVDI---I  104 (316)
T ss_dssp             HHTTCEEEEETCTTSHHHHHHHHT-T-CSEEEEEECSTT-HHHHHHHHHHTTCTTTEEEEESCTTTCCCSSSCEEE---E
T ss_pred             cCCcCEEEEEecCCcHHHHHHHHh-C-CCEEEEEcCcHH-HhhhhhHHHHhCCccccceEeccHHHcccccceeEE---E
Confidence            347999999999999999888775 3 358999999975 577788888888854 99999999999877666664   5


Q ss_pred             EEe
Q 019802          318 FCI  320 (335)
Q Consensus       318 llD  320 (335)
                      +.+
T Consensus       105 vs~  107 (316)
T d1oria_         105 ISE  107 (316)
T ss_dssp             EEC
T ss_pred             eee
Confidence            544

>d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glycine N-methyltransferase
domain: Glycine N-methyltransferase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.44  E-value=1.4e-07  Score=84.19  Aligned_cols=80  Identities=13%  Similarity=0.188  Sum_probs=60.3

Q ss_pred             HHHHHHcCCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCC----cEEEEeccCCCCC-
Q 019802          231 SMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAA----NIEVLHGDFLNLD-  305 (335)
Q Consensus       231 ~l~~~~l~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~----ni~~~~~D~~~~~-  305 (335)
                      .++...+..+++.+|||+|||+|..+..|++.   ..+|+|+|+|+.|++.++++....+..    ...+...|+..++ 
T Consensus        46 ~~l~~~l~~~~~~~vLD~GcG~G~~~~~la~~---g~~v~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~  122 (292)
T d1xvaa_          46 AWLLGLLRQHGCHRVLDVACGTGVDSIMLVEE---GFSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDK  122 (292)
T ss_dssp             HHHHHHHHHTTCCEEEESSCTTSHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHHH
T ss_pred             HHHHHHhhhcCCCEEEEecCCCcHHHHHHHHc---CCeeeeccCchHHHHHHHHHHHhcccccccceeeeeecccccccc
Confidence            45566677778899999999999999999986   358999999999999999999887753    2345555554332 


Q ss_pred             --CCCCCCce
Q 019802          306 --PKDPAYSE  313 (335)
Q Consensus       306 --~~~~~fd~  313 (335)
                        +....||.
T Consensus       123 ~~~~~~~fd~  132 (292)
T d1xvaa_         123 DVPAGDGFDA  132 (292)
T ss_dssp             HSCCTTCEEE
T ss_pred             ccCCCCCceE
Confidence              22345764

>d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein ECA1738
species: Erwinia carotovora [TaxId: 554]

Probab=98.43  E-value=1.4e-07  Score=80.89  Aligned_cols=70  Identities=19%  Similarity=0.218  Sum_probs=56.7

Q ss_pred             cCCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCceE
Q 019802          237 LAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEV  314 (335)
Q Consensus       237 l~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~~~~~~fd~V  314 (335)
                      .....+.+|||+|||+|..+..+++.   ..+|+++|+|+.+++.++++..    .++.++++|+.++++ +++||.|
T Consensus        16 ~~~~~~~~VLDiGcG~G~~~~~l~~~---g~~v~giD~s~~~i~~a~~~~~----~~~~~~~~~~~~~~~-~~~fD~I   85 (225)
T d2p7ia1          16 TPFFRPGNLLELGSFKGDFTSRLQEH---FNDITCVEASEEAISHAQGRLK----DGITYIHSRFEDAQL-PRRYDNI   85 (225)
T ss_dssp             GGGCCSSCEEEESCTTSHHHHHHTTT---CSCEEEEESCHHHHHHHHHHSC----SCEEEEESCGGGCCC-SSCEEEE
T ss_pred             hhhCCCCcEEEEeCCCcHHHHHHHHc---CCeEEEEeCcHHHhhhhhcccc----ccccccccccccccc-ccccccc
Confidence            34446778999999999999988765   2479999999999999987643    479999999998876 4568764

>d2f8la1 c.66.1.45 (A:2-329) Hypothetical protein Lmo1582 {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: Hypothetical protein Lmo1582
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.39  E-value=6.1e-07  Score=81.30  Aligned_cols=90  Identities=11%  Similarity=0.082  Sum_probs=70.7

Q ss_pred             HHHHHcCCCCCCEEEEEcCCCchHHHHHHHHcC----CCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCC
Q 019802          232 MVAAALAPKPGWKVLDACSAPGNKTVHLAALMK----GKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPK  307 (335)
Q Consensus       232 l~~~~l~~~~g~~VLD~cagpG~kt~~la~~~~----~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~~~  307 (335)
                      ++..++.++++.+|||.|||+|+....+...+.    ...+++++|+++..++.++.++...+.. ..+.++|.....+ 
T Consensus       108 l~~~~~~~~~~~~vlDp~~GsG~~l~~~~~~l~~~~~~~~~~~g~di~~~~~~~a~~~~~~~~~~-~~~~~~d~~~~~~-  185 (328)
T d2f8la1         108 LLEKVIQKKKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQK-MTLLHQDGLANLL-  185 (328)
T ss_dssp             HHHHHHTTCSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTCC-CEEEESCTTSCCC-
T ss_pred             HHHHHhCCCCCCEEEeCCCCcchhHHHHHHHHHhccCccceEEEecccHHHHHHHHHHHHHhhhh-hhhhccccccccc-
Confidence            445566788899999999999999999887653    2358999999999999999999988874 5677777765443 


Q ss_pred             CCCCceEEEEEEecccccc
Q 019802          308 DPAYSEVSLIFCIFTWMII  326 (335)
Q Consensus       308 ~~~fd~V~~IllD~~cs~~  326 (335)
                         ...+|.|+.+||.+..
T Consensus       186 ---~~~fD~vi~NPPy~~~  201 (328)
T d2f8la1         186 ---VDPVDVVISDLPVGYY  201 (328)
T ss_dssp             ---CCCEEEEEEECCCSEE
T ss_pred             ---cccccccccCCCCCCC
Confidence               2345569999999654

>d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Carminomycin 4-O-methyltransferase
species: Streptomyces peucetius [TaxId: 1950]

Probab=98.39  E-value=5.5e-07  Score=78.64  Aligned_cols=84  Identities=23%  Similarity=0.206  Sum_probs=68.1

Q ss_pred             cCchHHHHHHHcCCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCC-CcEEEEeccCCCC
Q 019802          226 QGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGA-ANIEVLHGDFLNL  304 (335)
Q Consensus       226 Qd~~s~l~~~~l~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~-~ni~~~~~D~~~~  304 (335)
                      ++.....+...++.....+|||+|||+|..+..+++.. ++.+++++|+ +.+++.+++++...|+ .+|+++.+|+.+.
T Consensus        65 ~~~~~~~~~~~~d~~~~~~VLDvGcG~G~~~~~la~~~-p~~~~~~~D~-~~~~~~a~~~~~~~~~~~rv~~~~~D~~~~  142 (253)
T d1tw3a2          65 QDVAFDAPAAAYDWTNVRHVLDVGGGKGGFAAAIARRA-PHVSATVLEM-AGTVDTARSYLKDEGLSDRVDVVEGDFFEP  142 (253)
T ss_dssp             TTTTTHHHHHHSCCTTCSEEEEETCTTSHHHHHHHHHC-TTCEEEEEEC-TTHHHHHHHHHHHTTCTTTEEEEECCTTSC
T ss_pred             HHHHHHHHHhhcCCccCCEEEEeCCCCCHHHHHHHHhc-ceeEEEEccC-HHHHHHHHHHHHHhhcccchhhccccchhh
Confidence            34444556677888888999999999999999999985 4689999998 6799999999999987 4699999999764


Q ss_pred             CCCCCCCce
Q 019802          305 DPKDPAYSE  313 (335)
Q Consensus       305 ~~~~~~fd~  313 (335)
                      .+  .+||.
T Consensus       143 ~~--~~~D~  149 (253)
T d1tw3a2         143 LP--RKADA  149 (253)
T ss_dssp             CS--SCEEE
T ss_pred             cc--cchhh
Confidence            33  34664

>d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: COMT domain-containing protein 1, COMTD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.34  E-value=2.8e-07  Score=79.11  Aligned_cols=91  Identities=15%  Similarity=0.188  Sum_probs=74.5

Q ss_pred             hHHHHHHHcCCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCc-EEEEeccCCCCCC-
Q 019802          229 ASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAAN-IEVLHGDFLNLDP-  306 (335)
Q Consensus       229 ~s~l~~~~l~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~n-i~~~~~D~~~~~~-  306 (335)
                      ..+++..+.......+||++|++.|.-|..+|+.++.+|+|+++|.+++..+.+++++++.|+.+ ++++.+|+.+..+ 
T Consensus        47 ~g~lL~~L~~~~~~k~vLEiGt~~GyStl~~a~al~~~g~i~tie~~~~~~~~A~~~~~~ag~~~~i~~~~Gda~e~l~~  126 (219)
T d2avda1          47 QAQLLANLARLIQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDE  126 (219)
T ss_dssp             HHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHH
T ss_pred             HHHHHHHHHHccCCCeEEEEechhhHHHHHHHHhCCCCceEEEEeechhHHHHHHHHHHhcCccceEEEEEeehhhcchh
Confidence            35566666655667899999999999999999999888999999999999999999999999966 9999999866331 


Q ss_pred             -----CCCCCceEEEEEEecc
Q 019802          307 -----KDPAYSEVSLIFCIFT  322 (335)
Q Consensus       307 -----~~~~fd~V~~IllD~~  322 (335)
                           ....||   -|++|..
T Consensus       127 ~~~~~~~~~fD---~ifiD~d  144 (219)
T d2avda1         127 LLAAGEAGTFD---VAVVDAD  144 (219)
T ss_dssp             HHHTTCTTCEE---EEEECSC
T ss_pred             hhhhcccCCcc---EEEEeCC
Confidence                 234465   4888854

>d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Caffeoyl-CoA O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=98.33  E-value=2.2e-07  Score=80.11  Aligned_cols=90  Identities=21%  Similarity=0.225  Sum_probs=74.7

Q ss_pred             HHHHHHHcCCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCc-EEEEeccCCCCCC--
Q 019802          230 SSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAAN-IEVLHGDFLNLDP--  306 (335)
Q Consensus       230 s~l~~~~l~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~n-i~~~~~D~~~~~~--  306 (335)
                      .+++..++......+||++|++.|.-|..||+.++.+|+|+++|.++...+.+++++++.|+.+ |+++.+|+.+.-+  
T Consensus        48 g~~L~~L~~~~~~k~iLEiGT~~GyStl~la~al~~~g~v~tie~~~~~~~~A~~~~~~~g~~~~i~~~~g~a~~~L~~l  127 (227)
T d1susa1          48 GQFLSMLLKLINAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVLDEM  127 (227)
T ss_dssp             HHHHHHHHHHHTCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHH
T ss_pred             HHHHHHHHHhcCCCcEEEecchhhhhHHHHHhhCCCCcEEEEEeccchhHHHHHHHHHHhccccceeeeehHHHHHHHHH
Confidence            4555555555567899999999999999999999888999999999999999999999999965 9999999976432  


Q ss_pred             -----CCCCCceEEEEEEecc
Q 019802          307 -----KDPAYSEVSLIFCIFT  322 (335)
Q Consensus       307 -----~~~~fd~V~~IllD~~  322 (335)
                           ..+.||.   ||+|.-
T Consensus       128 ~~~~~~~~~fD~---iFiDa~  145 (227)
T d1susa1         128 IKDEKNHGSYDF---IFVDAD  145 (227)
T ss_dssp             HHCGGGTTCBSE---EEECSC
T ss_pred             HhccccCCceeE---EEeccc
Confidence                 2346875   888853

>d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.32  E-value=3.9e-07  Score=84.95  Aligned_cols=87  Identities=18%  Similarity=0.141  Sum_probs=63.6

Q ss_pred             HHHHcCCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCC---------CcEEE-EeccCC
Q 019802          233 VAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGA---------ANIEV-LHGDFL  302 (335)
Q Consensus       233 ~~~~l~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~---------~ni~~-~~~D~~  302 (335)
                      +...+++++|++|||+|||.|..+.++|...+ ..+++++|+++.+++.++++.+..+.         ..+.+ ..+|+.
T Consensus       208 Il~~l~Lkpgd~fLDLGCG~G~~vl~aA~~~g-~~~v~GIDiS~~~i~~Ak~~~~e~~~~~~~~g~~~~~~~~~~~~~f~  286 (406)
T d1u2za_         208 VYQQCQLKKGDTFMDLGSGVGNCVVQAALECG-CALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSLKKSFV  286 (406)
T ss_dssp             HHHHTTCCTTCEEEEESCTTSHHHHHHHHHHC-CSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEESSCST
T ss_pred             HHHHhCCCCCCEEEeCCCCCcHHHHHHHHHcC-CCeEEEEeCCHHHHHHHHHHHHHHhhhhhhhccccccceeeeeechh
Confidence            44567899999999999999999999998865 46899999999999999999887531         22333 455555


Q ss_pred             CCCCCCCCCceEEEEEEe
Q 019802          303 NLDPKDPAYSEVSLIFCI  320 (335)
Q Consensus       303 ~~~~~~~~fd~V~~IllD  320 (335)
                      ..+..+..++.++.|+++
T Consensus       287 ~~~~~d~~~~~adVV~in  304 (406)
T d1u2za_         287 DNNRVAELIPQCDVILVN  304 (406)
T ss_dssp             TCHHHHHHGGGCSEEEEC
T ss_pred             hccccccccccceEEEEe
Confidence            444333334445556654

>d2ih2a1 c.66.1.27 (A:21-243) DNA methylase TaqI, N-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: DNA methylase TaqI, N-terminal domain
domain: DNA methylase TaqI, N-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=98.26  E-value=1.3e-06  Score=74.13  Aligned_cols=86  Identities=17%  Similarity=0.179  Sum_probs=67.8

Q ss_pred             HHHHHHHcCCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCC
Q 019802          230 SSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDP  309 (335)
Q Consensus       230 s~l~~~~l~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~~~~~  309 (335)
                      +.+++.++.+++|++|||.|||+|+....+.+.+.....++++|+++..++.         .....++++|....+..  
T Consensus         8 ~~~m~~l~~~~~~~~IlDp~~G~G~fl~~~~~~~~~~~~i~g~ei~~~~~~~---------~~~~~~~~~~~~~~~~~--   76 (223)
T d2ih2a1           8 VDFMVSLAEAPRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDL---------PPWAEGILADFLLWEPG--   76 (223)
T ss_dssp             HHHHHHHCCCCTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCC---------CTTEEEEESCGGGCCCS--
T ss_pred             HHHHHHhcCCCCcCEEEECCCchHHHHHHHHHhccccceEEeeecCHHHHhh---------cccceeeeeehhccccc--
Confidence            5677888999999999999999999999999888878899999999875432         22357788888776542  


Q ss_pred             CCceEEEEEEecccccccc
Q 019802          310 AYSEVSLIFCIFTWMIIMF  328 (335)
Q Consensus       310 ~fd~V~~IllD~~cs~~g~  328 (335)
                        +.++.|+.+||......
T Consensus        77 --~~fd~ii~npP~~~~~~   93 (223)
T d2ih2a1          77 --EAFDLILGNPPYGIVGE   93 (223)
T ss_dssp             --SCEEEEEECCCCCCBSC
T ss_pred             --cccceecccCccccccc
Confidence              34557999999866543

>d1yuba_ c.66.1.24 (A:) rRNA adenine dimethylase {Streptococcus pneumoniae, Ermam [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: rRNA adenine dimethylase
species: Streptococcus pneumoniae, Ermam [TaxId: 1313]

Probab=98.23  E-value=1.1e-07  Score=83.13  Aligned_cols=87  Identities=16%  Similarity=0.205  Sum_probs=69.5

Q ss_pred             HHHHHHHcCCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCC
Q 019802          230 SSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDP  309 (335)
Q Consensus       230 s~l~~~~l~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~~~~~  309 (335)
                      ...++..+++.+++.|||+|+|+|..|..|++.   ..+|+|+|+++++++.+++++.  +..|++++++|+.+++....
T Consensus        18 i~kIv~~~~~~~~d~VLEIGpG~G~LT~~L~~~---~~~v~aIE~D~~l~~~l~~~~~--~~~n~~ii~~D~l~~~~~~~   92 (245)
T d1yuba_          18 LNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKI---SKQVTSIELDSHLFNLSSEKLK--LNTRVTLIHQDILQFQFPNK   92 (245)
T ss_dssp             HHHHHHHCCCCSSEEEEECSCCCSSCSHHHHHH---SSEEEESSSSCSSSSSSSCTTT--TCSEEEECCSCCTTTTCCCS
T ss_pred             HHHHHHhcCCCCCCeEEEECCCccHHHHHHHhh---cCceeEeeecccchhhhhhhhh--hccchhhhhhhhhccccccc
Confidence            345677889999999999999999999999987   3589999999999998887765  34689999999999887654


Q ss_pred             CCceEEEEEEecccc
Q 019802          310 AYSEVSLIFCIFTWM  324 (335)
Q Consensus       310 ~fd~V~~IllD~~cs  324 (335)
                      .+.   .|+-+.|..
T Consensus        93 ~~~---~vv~NLPY~  104 (245)
T d1yuba_          93 QRY---KIVGNIPYH  104 (245)
T ss_dssp             SEE---EEEEECCSS
T ss_pred             eee---eEeeeeehh
Confidence            333   344566543

>d1zq9a1 c.66.1.24 (A:36-313) Probable dimethyladenosine transferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: Probable dimethyladenosine transferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.21  E-value=5.1e-06  Score=73.42  Aligned_cols=88  Identities=27%  Similarity=0.372  Sum_probs=71.2

Q ss_pred             HHHHHHHcCCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCC-CcEEEEeccCCCCCCCC
Q 019802          230 SSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGA-ANIEVLHGDFLNLDPKD  308 (335)
Q Consensus       230 s~l~~~~l~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~-~ni~~~~~D~~~~~~~~  308 (335)
                      ...++..+++.+++.||++|+|+|..|.+|++.   ..+|+|+|+++..++.+++.+..... .+++++++|+...+.+.
T Consensus        10 ~~kIv~~~~~~~~d~VlEIGPG~G~LT~~Ll~~---~~~v~aiE~D~~l~~~L~~~~~~~~~~~~~~~i~~D~l~~~~~~   86 (278)
T d1zq9a1          10 INSIIDKAALRPTDVVLEVGPGTGNMTVKLLEK---AKKVVACELDPRLVAELHKRVQGTPVASKLQVLVGDVLKTDLPF   86 (278)
T ss_dssp             HHHHHHHTCCCTTCEEEEECCTTSTTHHHHHHH---SSEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEESCTTTSCCCC
T ss_pred             HHHHHHHhCCCCCCEEEEECCCchHHHHHHHhc---CCcEEEEEEccchhHHHHHHHhhhccccchhhhHHHHhhhhhhh
Confidence            345567788999999999999999999999987   35899999999999999999876543 57999999999887543


Q ss_pred             CCCceEEEEEEeccccc
Q 019802          309 PAYSEVSLIFCIFTWMI  325 (335)
Q Consensus       309 ~~fd~V~~IllD~~cs~  325 (335)
                        +.   .|+-+.|.+-
T Consensus        87 --~~---~vV~NLPY~I   98 (278)
T d1zq9a1          87 --FD---TCVANLPYQI   98 (278)
T ss_dssp             --CS---EEEEECCGGG
T ss_pred             --hh---hhhcchHHHH
Confidence              22   2555766653

>d1jsxa_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glucose-inhibited division protein B (GidB)
domain: Glucose-inhibited division protein B (GidB)
species: Escherichia coli [TaxId: 562]

Probab=98.15  E-value=6.1e-06  Score=69.78  Aligned_cols=78  Identities=17%  Similarity=0.258  Sum_probs=65.7

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCceEEEEEEe
Q 019802          241 PGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVSLIFCI  320 (335)
Q Consensus       241 ~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~~~~~~fd~V~~IllD  320 (335)
                      ++..|+|+|+|.|--+..+|-. .++.+++.+|.+.+|+.-+++-..++|++|+++++..++++.. ...||.   |..-
T Consensus        65 ~~~~ilDiGsGaG~PGi~laI~-~p~~~~~Lves~~KK~~FL~~~~~~L~L~nv~v~~~R~E~~~~-~~~fD~---V~sR  139 (207)
T d1jsxa_          65 QGERFIDVGTGPGLPGIPLSIV-RPEAHFTLLDSLGKRVRFLRQVQHELKLENIEPVQSRVEEFPS-EPPFDG---VISR  139 (207)
T ss_dssp             CSSEEEEETCTTTTTHHHHHHH-CTTSEEEEEESCHHHHHHHHHHHHHTTCSSEEEEECCTTTSCC-CSCEEE---EECS
T ss_pred             cCCceeeeeccCCceeeehhhh-cccceEEEEecchHHHHHHHHHHHHcCCcceeeeccchhhhcc-ccccce---ehhh
Confidence            4579999999999999999976 4568999999999999999999999999999999999998764 345764   4444


Q ss_pred             ccc
Q 019802          321 FTW  323 (335)
Q Consensus       321 ~~c  323 (335)
                      +.+
T Consensus       140 A~~  142 (207)
T d1jsxa_         140 AFA  142 (207)
T ss_dssp             CSS
T ss_pred             hhc
Confidence            443

>d2oyra1 c.66.1.55 (A:1-250) Hypothetical protein YhiQ {Shigella flexneri [TaxId: 623]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhiQ-like
domain: Hypothetical protein YhiQ
species: Shigella flexneri [TaxId: 623]

Probab=98.12  E-value=2e-06  Score=74.74  Aligned_cols=88  Identities=20%  Similarity=0.205  Sum_probs=70.6

Q ss_pred             HHHHHHHcCCCCC--CEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCC---------CcEEEEe
Q 019802          230 SSMVAAALAPKPG--WKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGA---------ANIEVLH  298 (335)
Q Consensus       230 s~l~~~~l~~~~g--~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~---------~ni~~~~  298 (335)
                      .+.++..++.+++  .+|||++||.|.-+..+|.+   .++|+++|.++.....++++++++..         .++++++
T Consensus        75 ~~~l~kA~gl~~~~~~~VlD~TaGlG~Da~vlA~~---G~~V~~iEr~p~l~~ll~d~l~r~~~~~~~~~~~~~ri~li~  151 (250)
T d2oyra1          75 GEAVAKAVGIKGDYLPDVVDATAGLGRDAFVLASV---GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIH  151 (250)
T ss_dssp             GSHHHHHTTCBTTBCCCEEETTCTTCHHHHHHHHH---TCCEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEE
T ss_pred             hhHHHHHhcCCCCCCCEEEECCCcccHHHHHHHhC---CCEEEEEccCHHHHHHHHHHHHHHHhCchhHHHHhhhheeec
Confidence            3566777776665  48999999999999999987   36899999999999999999988653         3799999


Q ss_pred             ccCCCCCC-CCCCCceEEEEEEeccc
Q 019802          299 GDFLNLDP-KDPAYSEVSLIFCIFTW  323 (335)
Q Consensus       299 ~D~~~~~~-~~~~fd~V~~IllD~~c  323 (335)
                      +|+.++-. ....||   +|++||.-
T Consensus       152 ~Ds~~~L~~~~~~~D---vIYlDPMF  174 (250)
T d2oyra1         152 ASSLTALTDITPRPQ---VVYLDPMF  174 (250)
T ss_dssp             SCHHHHSTTCSSCCS---EEEECCCC
T ss_pred             CcHHHHHhccCCCCC---EEEECCCC
Confidence            99877543 234566   59999864

>d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Aclacinomycin-10-hydroxylase RdmB
species: Streptomyces purpurascens [TaxId: 1924]

Probab=98.09  E-value=1e-05  Score=70.63  Aligned_cols=78  Identities=22%  Similarity=0.173  Sum_probs=63.3

Q ss_pred             HHHHHcCCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCC-cEEEEeccCCCCCCCCCC
Q 019802          232 MVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAA-NIEVLHGDFLNLDPKDPA  310 (335)
Q Consensus       232 l~~~~l~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~-ni~~~~~D~~~~~~~~~~  310 (335)
                      .+...++.....+|||+|||+|..+..+++.. ++.+++++|+ +..++.++++++..|.. ++.++.+|+.+..+  ..
T Consensus        72 ~~~~~~d~~~~~~vlDvG~G~G~~~~~l~~~~-P~~~~~~~Dl-p~~~~~a~~~~~~~~~~~ri~~~~~d~~~~~p--~~  147 (256)
T d1qzza2          72 APADAYDWSAVRHVLDVGGGNGGMLAAIALRA-PHLRGTLVEL-AGPAERARRRFADAGLADRVTVAEGDFFKPLP--VT  147 (256)
T ss_dssp             HHHHTSCCTTCCEEEEETCTTSHHHHHHHHHC-TTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTSCCS--CC
T ss_pred             HHHhcCCCccCCEEEEECCCCCHHHHHHHHhh-cCcEEEEecC-hHHHHHHHHHHhhcCCcceeeeeeeecccccc--cc
Confidence            34455677778899999999999999999985 4689999997 78999999999999875 49999999876332  34


Q ss_pred             Cce
Q 019802          311 YSE  313 (335)
Q Consensus       311 fd~  313 (335)
                      ||.
T Consensus       148 ~D~  150 (256)
T d1qzza2         148 ADV  150 (256)
T ss_dssp             EEE
T ss_pred             chh
Confidence            664

>d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Histamine methyltransferase
domain: Histamine methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.07  E-value=1.7e-06  Score=76.27  Aligned_cols=81  Identities=11%  Similarity=0.109  Sum_probs=56.3

Q ss_pred             CCCCCCEEEEEcCCCchHHHHHHHHcC-----CCeEEEEEeCCHHHHHHHHHHHHHhC-CCcEEE--EeccCCC------
Q 019802          238 APKPGWKVLDACSAPGNKTVHLAALMK-----GKGKIVACELNKERVRRLKDTIKLSG-AANIEV--LHGDFLN------  303 (335)
Q Consensus       238 ~~~~g~~VLD~cagpG~kt~~la~~~~-----~~g~i~a~D~~~~rl~~~~~~~~~~g-~~ni~~--~~~D~~~------  303 (335)
                      ..+++.+|||+|||+|..+..++..+.     ....++++|+|+.+++.+++++++.. +.++.+  .+.++..      
T Consensus        37 ~~~~~~~VLDiGcG~G~~~~~ll~~l~~~~~~~~~~~~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  116 (280)
T d1jqea_          37 DTKSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKISNLENVKFAWHKETSSEYQSRML  116 (280)
T ss_dssp             TTCSEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECCCHHHHHHHHHHHTTCCSCTTEEEEEECSCHHHHHHHHT
T ss_pred             cCCCCCeEEEEcCCCCHHHHHHHHHhhhhccCCceEEEEEeCcHHHHHHHHHHHhhccccccccccchhhhhhhhcchhc
Confidence            344555899999999999998876532     23578999999999999999987643 344443  4444432      


Q ss_pred             CCCCCCCCceEEEEE
Q 019802          304 LDPKDPAYSEVSLIF  318 (335)
Q Consensus       304 ~~~~~~~fd~V~~Il  318 (335)
                      .+..+++||.|.++.
T Consensus       117 ~~~~~~~fD~I~~~~  131 (280)
T d1jqea_         117 EKKELQKWDFIHMIQ  131 (280)
T ss_dssp             TSSSCCCEEEEEEES
T ss_pred             ccCCCCceeEEEEcc
Confidence            233466788764443

>d1ej0a_ c.66.1.2 (A:) RNA methyltransferase FtsJ {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: RNA methyltransferase FtsJ
domain: RNA methyltransferase FtsJ
species: Escherichia coli [TaxId: 562]

Probab=97.97  E-value=2.7e-06  Score=70.53  Aligned_cols=79  Identities=27%  Similarity=0.379  Sum_probs=60.1

Q ss_pred             CCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCC-----CCCce
Q 019802          239 PKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKD-----PAYSE  313 (335)
Q Consensus       239 ~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~~~~-----~~fd~  313 (335)
                      .+++..|||+||||||.+..+++.+++.++|+++|+.+-           ..++++.++++|..+.....     .....
T Consensus        20 ~k~~~~vlDLg~aPGgw~q~~~~~~~~~~~v~~vDl~~~-----------~~i~~~~~~~~d~~~~~~~~~~~~~~~~~~   88 (180)
T d1ej0a_          20 FKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLPM-----------DPIVGVDFLQGDFRDELVMKALLERVGDSK   88 (180)
T ss_dssp             CCTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSCC-----------CCCTTEEEEESCTTSHHHHHHHHHHHTTCC
T ss_pred             cCCCCeEEEEeccCCcceEEEEeeccccceEEEeecccc-----------cccCCceEeecccccchhhhhhhhhccCcc
Confidence            478999999999999999999999888899999998652           14678999999997744210     11235


Q ss_pred             EEEEEEecccccccc
Q 019802          314 VSLIFCIFTWMIIMF  328 (335)
Q Consensus       314 V~~IllD~~cs~~g~  328 (335)
                      ++.|+.|....-+|.
T Consensus        89 ~DlVlSD~ap~~sg~  103 (180)
T d1ej0a_          89 VQVVMSDMAPNMSGT  103 (180)
T ss_dssp             EEEEEECCCCCCCSC
T ss_pred             eeEEEecccchhccc
Confidence            778999955544544

>d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Indolethylamine N-methyltransferase, INMT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.97  E-value=1.1e-06  Score=76.30  Aligned_cols=51  Identities=18%  Similarity=0.117  Sum_probs=42.0

Q ss_pred             CCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCC
Q 019802          239 PKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGA  291 (335)
Q Consensus       239 ~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~  291 (335)
                      ..+|.+|||+|||+|..+..++..  ....|+++|+|+.+++.++++++..+.
T Consensus        49 ~~~g~~vLDlGcG~G~~~~~~~~~--~~~~v~giD~S~~~i~~a~~~~~~~~~   99 (257)
T d2a14a1          49 GLQGDTLIDIGSGPTIYQVLAACD--SFQDITLSDFTDRNREELEKWLKKEPG   99 (257)
T ss_dssp             SCCEEEEEESSCTTCCGGGTTGGG--TEEEEEEEESCHHHHHHHHHHHHTCTT
T ss_pred             CCCCCEEEEECCCCCHhHHHHhcc--ccCcEEEecCCHHHHHHHHHHHhhccc
Confidence            456889999999999998766654  234799999999999999999876543

>d2okca1 c.66.1.45 (A:9-433) Type I restriction enzyme StySJI M protein {Bacteroides thetaiotaomicron [TaxId: 818]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: Type I restriction enzyme StySJI M protein
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=97.96  E-value=1.3e-05  Score=75.01  Aligned_cols=103  Identities=17%  Similarity=0.185  Sum_probs=80.0

Q ss_pred             ceEEecCchHHHHHHHcCCCCCCEEEEEcCCCchHHHHHHHHcCCC------------eEEEEEeCCHHHHHHHHHHHHH
Q 019802          221 GCVFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGK------------GKIVACELNKERVRRLKDTIKL  288 (335)
Q Consensus       221 g~~~iQd~~s~l~~~~l~~~~g~~VLD~cagpG~kt~~la~~~~~~------------g~i~a~D~~~~rl~~~~~~~~~  288 (335)
                      |.|+--..-+.+++.++++.++++|+|-|||+|+....+.+.+...            ..+++.|+++.....++-|+.-
T Consensus       142 G~f~TP~~Iv~~mv~ll~~~~~~~IlDPacGsG~fL~~a~~~~~~~~~~~~~~~~~~~~~l~g~E~~~~~~~la~~n~~l  221 (425)
T d2okca1         142 GQYFTPRPLIQAMVDCINPQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYL  221 (425)
T ss_dssp             GGGCCCHHHHHHHHHHHCCCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHH
T ss_pred             hhhccchhhhHhhheeccCcccceeeccccccCccHHHHHHHHHhhccchhhhhhhhhhhhhhhhccHHHHHHHHhhhhh
Confidence            5444444556788889999999999999999999999988876432            2499999999999999999988


Q ss_pred             hCCC--cEEEEeccCCCCCCCCCCCceEEEEEEeccccccc
Q 019802          289 SGAA--NIEVLHGDFLNLDPKDPAYSEVSLIFCIFTWMIIM  327 (335)
Q Consensus       289 ~g~~--ni~~~~~D~~~~~~~~~~fd~V~~IllD~~cs~~g  327 (335)
                      .|..  +..+.+.|......    ....|.|+.+||-+...
T Consensus       222 ~g~~~~~~~i~~~d~l~~~~----~~~fD~Ii~NPPfg~~~  258 (425)
T d2okca1         222 HGIGTDRSPIVCEDSLEKEP----STLVDVILANPPFGTRP  258 (425)
T ss_dssp             TTCCSSCCSEEECCTTTSCC----SSCEEEEEECCCSSCCC
T ss_pred             cCCccccceeecCchhhhhc----ccccceEEecCCCCCCc
Confidence            8764  35677888865443    23445699999996543

>d1qyra_ c.66.1.24 (A:) High level kasugamycin resistance protein KsgA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: High level kasugamycin resistance protein KsgA
species: Escherichia coli [TaxId: 562]

Probab=97.92  E-value=3.9e-06  Score=73.20  Aligned_cols=92  Identities=13%  Similarity=0.225  Sum_probs=69.1

Q ss_pred             HHHHHHHcCCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCC-
Q 019802          230 SSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKD-  308 (335)
Q Consensus       230 s~l~~~~l~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~~~~-  308 (335)
                      ..-++..+++.+++.||++|+|+|..|..|++.   ..+|+|+|+++..++.+++....  .+|++++++|+.+++... 
T Consensus        10 ~~~Iv~~~~~~~~d~vlEIGpG~G~LT~~Ll~~---~~~v~aiEiD~~l~~~L~~~~~~--~~~~~ii~~D~l~~~~~~~   84 (252)
T d1qyra_          10 IDSIVSAINPQKGQAMVEIGPGLAALTEPVGER---LDQLTVIELDRDLAARLQTHPFL--GPKLTIYQQDAMTFNFGEL   84 (252)
T ss_dssp             HHHHHHHHCCCTTCCEEEECCTTTTTHHHHHTT---CSCEEEECCCHHHHHHHHTCTTT--GGGEEEECSCGGGCCHHHH
T ss_pred             HHHHHHhcCCCCCCEEEEECCCchHHHHHHHcc---CCceEEEEeccchhHHHHHHhhh--ccchhHHhhhhhhhccccc
Confidence            344577788999999999999999999999876   35799999999999999875432  358999999999876532 


Q ss_pred             -CCCceEEEEEEecccccc
Q 019802          309 -PAYSEVSLIFCIFTWMII  326 (335)
Q Consensus       309 -~~fd~V~~IllD~~cs~~  326 (335)
                       ..++.-..|+-+.|.+-+
T Consensus        85 ~~~~~~~~~vvgNlPY~Is  103 (252)
T d1qyra_          85 AEKMGQPLRVFGNLPYNIS  103 (252)
T ss_dssp             HHHHTSCEEEEEECCTTTH
T ss_pred             ccccCCCeEEEecchHHHH
Confidence             001111246667777644

>d1xdza_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glucose-inhibited division protein B (GidB)
domain: Glucose-inhibited division protein B (GidB)
species: Bacillus subtilis [TaxId: 1423]

Probab=97.92  E-value=1.7e-05  Score=68.35  Aligned_cols=83  Identities=7%  Similarity=0.035  Sum_probs=66.0

Q ss_pred             CCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCceEEEEEE
Q 019802          240 KPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVSLIFC  319 (335)
Q Consensus       240 ~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~~~~~~fd~V~~Ill  319 (335)
                      ..+..|+|+|+|.|-=+..+|-.+ ++.+++-+|.+.+|+.-+++-.+.+|++|+.+++..++++.........+|.|..
T Consensus        69 ~~~~~ilDiGSGaGfPGi~laI~~-p~~~v~Lves~~KK~~FL~~v~~~L~L~n~~i~~~R~E~~~~~~~~~~~~D~v~s  147 (239)
T d1xdza_          69 NQVNTICDVGAGAGFPSLPIKICF-PHLHVTIVDSLNKRITFLEKLSEALQLENTTFCHDRAETFGQRKDVRESYDIVTA  147 (239)
T ss_dssp             GGCCEEEEECSSSCTTHHHHHHHC-TTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEESCHHHHTTCTTTTTCEEEEEE
T ss_pred             cCCCeEEeecCCCchHHHHHHHhC-CCccceeecchHHHHHHHHHHHHHhCCCCcEEEeehhhhccccccccccceEEEE
Confidence            356789999999999999999875 4689999999999999999999999999999999988876643322223334554


Q ss_pred             eccc
Q 019802          320 IFTW  323 (335)
Q Consensus       320 D~~c  323 (335)
                      -+..
T Consensus       148 RAva  151 (239)
T d1xdza_         148 RAVA  151 (239)
T ss_dssp             ECCS
T ss_pred             hhhh
Confidence            4443

>d2dula1 c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TRM1-like
domain: N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=97.82  E-value=9.2e-06  Score=74.82  Aligned_cols=83  Identities=18%  Similarity=0.108  Sum_probs=64.9

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCc---------------EEEEeccCCCCC
Q 019802          241 PGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAAN---------------IEVLHGDFLNLD  305 (335)
Q Consensus       241 ~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~n---------------i~~~~~D~~~~~  305 (335)
                      .+.+|||+.||+|..+++.+...+ ...|+++|+|+..++.+++|++..|+.+               +.+.+.|+..+.
T Consensus        45 ~~~~vLD~~sasG~rsiRya~E~~-~~~V~~nDis~~A~~~i~~N~~lN~~~~~~~~~~~~~~~~~~~~~~~~~Da~~~~  123 (375)
T d2dula1          45 NPKIVLDALSATGIRGIRFALETP-AEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLM  123 (375)
T ss_dssp             CCSEEEESSCTTSHHHHHHHHHSS-CSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHHH
T ss_pred             CCCEEEEcCCCccHHHHHHHHhCC-CCEEEEecCCHHHHHHHHHHHHhcCccccccccccccccccceeEeehhhhhhhh
Confidence            578999999999999998877654 4589999999999999999999988753               566777765443


Q ss_pred             CC-CCCCceEEEEEEeccccccc
Q 019802          306 PK-DPAYSEVSLIFCIFTWMIIM  327 (335)
Q Consensus       306 ~~-~~~fd~V~~IllD~~cs~~g  327 (335)
                      .. ...||   .|.+||.-|..-
T Consensus       124 ~~~~~~fD---vIDiDPfGs~~p  143 (375)
T d2dula1         124 AERHRYFH---FIDLDPFGSPME  143 (375)
T ss_dssp             HHSTTCEE---EEEECCSSCCHH
T ss_pred             HhhcCcCC---cccCCCCCCcHH
Confidence            22 23455   699999877543

>d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Phenylethanolamine N-methyltransferase, PNMTase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.51  E-value=3.1e-05  Score=67.59  Aligned_cols=49  Identities=14%  Similarity=0.093  Sum_probs=39.0

Q ss_pred             CCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHH
Q 019802          238 APKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKL  288 (335)
Q Consensus       238 ~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~  288 (335)
                      +...|.+|||+|||||..+...+..  ...+|+++|+|+.+++.+++.++.
T Consensus        51 g~~~g~~vLDiGcG~g~~~~~~~~~--~~~~v~~~D~S~~~i~~~~~~~~~   99 (263)
T d2g72a1          51 GEVSGRTLIDIGSGPTVYQLLSACS--HFEDITMTDFLEVNRQELGRWLQE   99 (263)
T ss_dssp             SCSCCSEEEEETCTTCCGGGTTGGG--GCSEEEEECSCHHHHHHHHHHHTT
T ss_pred             CCCCCcEEEEeccCCCHHHHHHhcc--cCCeEEEEeCCHHHHHHHHHHHhc
Confidence            4557899999999999877544433  224899999999999999988754

>d2ar0a1 c.66.1.45 (A:6-529) M.EcoKI {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: M.EcoKI
species: Escherichia coli [TaxId: 562]

Probab=97.31  E-value=0.00012  Score=70.10  Aligned_cols=107  Identities=14%  Similarity=0.089  Sum_probs=74.4

Q ss_pred             ccceEEecCchHHHHHHHcCCCCCCEEEEEcCCCchHHHHHHHHcCCC-----------------eEEEEEeCCHHHHHH
Q 019802          219 VNGCVFLQGKASSMVAAALAPKPGWKVLDACSAPGNKTVHLAALMKGK-----------------GKIVACELNKERVRR  281 (335)
Q Consensus       219 ~~g~~~iQd~~s~l~~~~l~~~~g~~VLD~cagpG~kt~~la~~~~~~-----------------g~i~a~D~~~~rl~~  281 (335)
                      ..|.|+--..-+.+++.++.+.++++|+|-|||+|+..+.+.+.+...                 ..+++.|+++...+.
T Consensus       142 ~~GqfyTP~~Iv~~mv~ll~~~~~~~i~DPacGsG~fL~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~G~E~~~~~~~l  221 (524)
T d2ar0a1         142 GAGQYFTPRPLIKTIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRL  221 (524)
T ss_dssp             ---CCCCCHHHHHHHHHHHCCCTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHH
T ss_pred             ccchhccccchhHhhhhcccCccchhhcchhhhcchhhHHHHHHHHHhcCcccccchhHHHHHHHhhhhhhccCHHHHHH
Confidence            346666666667888899999999999999999999999887765321                 258999999999999


Q ss_pred             HHHHHHHhCCCc-----EEEEeccCCCCCCCCCCCceEEEEEEeccccccc
Q 019802          282 LKDTIKLSGAAN-----IEVLHGDFLNLDPKDPAYSEVSLIFCIFTWMIIM  327 (335)
Q Consensus       282 ~~~~~~~~g~~n-----i~~~~~D~~~~~~~~~~fd~V~~IllD~~cs~~g  327 (335)
                      ++-|+--.|...     -.+...+...-+.  ......+.|+.+||.+...
T Consensus       222 a~~nl~l~~~~~~i~~~~~~~~~~~l~~d~--~~~~kfD~Ii~NPPfg~~~  270 (524)
T d2ar0a1         222 ALMNCLLHDIEGNLDHGGAIRLGNTLGSDG--ENLPKAHIVATNPPFGSAA  270 (524)
T ss_dssp             HHHHHHTTTCCCBGGGTBSEEESCTTSHHH--HTSCCEEEEEECCCCTTCS
T ss_pred             HHHHHHhhcccccccccchhhhhhhhhhcc--cccccceeEEecCCccccc
Confidence            999988766531     1123333322111  1123456799999997543

>d1i4wa_ c.66.1.24 (A:) Transcription factor sc-mtTFB {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: Transcription factor sc-mtTFB
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.14  E-value=0.00066  Score=60.75  Aligned_cols=78  Identities=13%  Similarity=0.098  Sum_probs=59.1

Q ss_pred             EEecCchHHHHHHHcCCC------CCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEE
Q 019802          223 VFLQGKASSMVAAALAPK------PGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEV  296 (335)
Q Consensus       223 ~~iQd~~s~l~~~~l~~~------~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~  296 (335)
                      |.+...-..-++..++..      .++.|||+|.|+|..|.+|.+..+. .+|+++|+++.-++.+++.+.   -.++++
T Consensus        19 fL~d~~i~~~Iv~~~~l~~~~~~~~~~~VlEIGPG~G~LT~~Ll~~~~~-~~v~~iE~D~~~~~~L~~~~~---~~~~~i   94 (322)
T d1i4wa_          19 YLWNPTVYNKIFDKLDLTKTYKHPEELKVLDLYPGVGIQSAIFYNKYCP-RQYSLLEKRSSLYKFLNAKFE---GSPLQI   94 (322)
T ss_dssp             CBCCHHHHHHHHHHHCGGGTCCCTTTCEEEEESCTTCHHHHHHHHHHCC-SEEEEECCCHHHHHHHHHHTT---TSSCEE
T ss_pred             ccCCHHHHHHHHHHhcCCccccccCCCeEEEECCCCCHHHHHHHhcCCC-CEEEEEECCHHHHHHHHHhcc---CCCcEE
Confidence            344333344555565543      4678999999999999999987432 589999999999999988754   257899


Q ss_pred             EeccCCCC
Q 019802          297 LHGDFLNL  304 (335)
Q Consensus       297 ~~~D~~~~  304 (335)
                      +++|+..+
T Consensus        95 i~~D~l~~  102 (322)
T d1i4wa_          95 LKRDPYDW  102 (322)
T ss_dssp             ECSCTTCH
T ss_pred             EeCchhhc
Confidence            99999765

>d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermus thermophilus [TaxId: 274]

Probab=96.66  E-value=0.00084  Score=59.76  Aligned_cols=79  Identities=14%  Similarity=0.074  Sum_probs=61.7

Q ss_pred             CCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhC-----CCcEEEEeccCCCCCC-CCCCCce
Q 019802          240 KPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSG-----AANIEVLHGDFLNLDP-KDPAYSE  313 (335)
Q Consensus       240 ~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g-----~~ni~~~~~D~~~~~~-~~~~fd~  313 (335)
                      ....+||.+|.|.|+...+++.. .+..+|+++|+++..++.+++.+...+     -++++++.+|+...-. ....|| 
T Consensus        76 ~~pk~VLiiG~G~G~~~~~ll~~-~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~d~rv~i~~~Da~~~l~~~~~~yD-  153 (312)
T d1uira_          76 PEPKRVLIVGGGEGATLREVLKH-PTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERYD-  153 (312)
T ss_dssp             SCCCEEEEEECTTSHHHHHHTTS-TTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCCEE-
T ss_pred             CCcceEEEeCCCchHHHHHHHhc-CCcceEEEecCCHHHHHHHHhcCcccccCccCCCceEEEEchHHHHhhhcCCccc-
Confidence            34578999999999999888765 445799999999999999999886532     2469999999988543 334565 


Q ss_pred             EEEEEEecc
Q 019802          314 VSLIFCIFT  322 (335)
Q Consensus       314 V~~IllD~~  322 (335)
                        .|++|++
T Consensus       154 --vIi~D~~  160 (312)
T d1uira_         154 --VVIIDLT  160 (312)
T ss_dssp             --EEEEECC
T ss_pred             --EEEEeCC
Confidence              5888874

>d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Putative spermidine synthetase PF0127 (SpeE)
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=96.52  E-value=0.0015  Score=56.96  Aligned_cols=81  Identities=15%  Similarity=0.165  Sum_probs=61.3

Q ss_pred             CCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHH----------hCCCcEEEEeccCCCCCCCC
Q 019802          239 PKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKL----------SGAANIEVLHGDFLNLDPKD  308 (335)
Q Consensus       239 ~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~----------~g~~ni~~~~~D~~~~~~~~  308 (335)
                      .....+||-+|.|.|+.+.++... + ..+|+++|+++..++.+++-+..          ..-++++++.+|+..+-..+
T Consensus        70 ~~~p~~vLiiG~G~G~~~~~~l~~-~-~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~~~~~~d~rv~i~~~Da~~~l~~~  147 (276)
T d1mjfa_          70 HPKPKRVLVIGGGDGGTVREVLQH-D-VDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFIKNN  147 (276)
T ss_dssp             SSCCCEEEEEECTTSHHHHHHTTS-C-CSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHHHHC
T ss_pred             CCCCceEEEecCCchHHHHHHHHh-C-CceEEEecCCHHHHHHHHHhhhhccchhhhhhccCCCCceEEEChHHHHHhcc
Confidence            345679999999999999888754 3 46899999999999999875531          12356999999997754444


Q ss_pred             CCCceEEEEEEecccc
Q 019802          309 PAYSEVSLIFCIFTWM  324 (335)
Q Consensus       309 ~~fd~V~~IllD~~cs  324 (335)
                      +.||   .|++|++.-
T Consensus       148 ~~yD---vIi~D~~~~  160 (276)
T d1mjfa_         148 RGFD---VIIADSTDP  160 (276)
T ss_dssp             CCEE---EEEEECCCC
T ss_pred             CCCC---EEEEeCCCC
Confidence            5565   589997763

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=96.46  E-value=0.0035  Score=51.64  Aligned_cols=51  Identities=24%  Similarity=0.285  Sum_probs=40.7

Q ss_pred             HHHcCCCCCCEEEEEcCCCch-HHHHHHHHcCCCeEEEEEeCCHHHHHHHHHH
Q 019802          234 AAALAPKPGWKVLDACSAPGN-KTVHLAALMKGKGKIVACELNKERVRRLKDT  285 (335)
Q Consensus       234 ~~~l~~~~g~~VLD~cagpG~-kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~  285 (335)
                      ++..++++|++||.+||||.| .+..++..++ ..+|+++|.+++|++.+++.
T Consensus        18 ~~~a~v~~G~tVlV~GaG~vGl~a~~~ak~~g-a~~Vi~~d~~~~rl~~a~~~   69 (195)
T d1kola2          18 AVTAGVGPGSTVYVAGAGPVGLAAAASARLLG-AAVVIVGDLNPARLAHAKAQ   69 (195)
T ss_dssp             HHHTTCCTTCEEEEECCSHHHHHHHHHHHHTT-CSEEEEEESCHHHHHHHHHT
T ss_pred             HHHhCCCCCCEEEEECcCHHHHHHHHHHHhhc-ccceeeecccchhhHhhhhc
Confidence            456789999999999999955 5556666654 57999999999999877643

>d1dcta_ c.66.1.26 (A:) DNA methylase HaeIII {Haemophilus aegyptius [TaxId: 197575]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: C5 cytosine-specific DNA methylase, DCM
domain: DNA methylase HaeIII
species: Haemophilus aegyptius [TaxId: 197575]

Probab=96.44  E-value=0.0034  Score=54.94  Aligned_cols=74  Identities=12%  Similarity=0.141  Sum_probs=56.5

Q ss_pred             CEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCceEEEEEEecc
Q 019802          243 WKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVSLIFCIFT  322 (335)
Q Consensus       243 ~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~~~~~~fd~V~~IllD~~  322 (335)
                      .+|||++||.||.+.-+-.. + --.+.|+|+++...+..+.|..      -.++++|..+++..+  +..+|.+..=||
T Consensus         1 mk~~~lF~G~Gg~~~gl~~a-G-~~~~~a~e~d~~a~~~~~~N~~------~~~~~~Di~~~~~~~--~~~~dll~~g~P   70 (324)
T d1dcta_           1 MNLISLFSGAGGLDLGFQKA-G-FRIICANEYDKSIWKTYESNHS------AKLIKGDISKISSDE--FPKCDGIIGGPP   70 (324)
T ss_dssp             CEEEEESCSSCHHHHHHHHH-T-CEEEEEEECCHHHHHHHHHHCC------SEEEESCTTTSCGGG--SCCCSEEEECCC
T ss_pred             CeEEEeCcCcCHHHHHHHHC-C-CEEEEEEeCCHHHHHHHHHHCC------CCCccCChhhCCHhH--cccccEEeeccc
Confidence            36999999999998776544 2 2356699999999999888842      256789999887543  456677888999


Q ss_pred             cccc
Q 019802          323 WMII  326 (335)
Q Consensus       323 cs~~  326 (335)
                      |-+-
T Consensus        71 Cq~f   74 (324)
T d1dcta_          71 CQSW   74 (324)
T ss_dssp             CTTT
T ss_pred             cccc
Confidence            9753

>d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermotoga maritima [TaxId: 2336]

Probab=96.38  E-value=0.0027  Score=55.82  Aligned_cols=80  Identities=14%  Similarity=0.089  Sum_probs=60.0

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHh----CCCcEEEEeccCCCCCC-CCCCCceEE
Q 019802          241 PGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLS----GAANIEVLHGDFLNLDP-KDPAYSEVS  315 (335)
Q Consensus       241 ~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~----g~~ni~~~~~D~~~~~~-~~~~fd~V~  315 (335)
                      ...+||-+|.|.|+.+..++.. .+..+|+++|+++..++.+++-+...    .-++++++.+|+...-. ....|   |
T Consensus        89 ~pk~VLiiGgG~G~~~r~~l~~-~~~~~i~~VEIDp~Vi~~a~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~y---D  164 (295)
T d1inla_          89 NPKKVLIIGGGDGGTLREVLKH-DSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFKNEF---D  164 (295)
T ss_dssp             SCCEEEEEECTTCHHHHHHTTS-TTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGCSSCE---E
T ss_pred             CCceEEEecCCchHHHHHHHhc-CCCceEEEecCCHHHHHHHHHHHHhhcccccCCCcEEEhhhHHHHHhcCCCCC---C
Confidence            3479999999999999888765 34468999999999999999876543    23569999999987543 33445   5


Q ss_pred             EEEEecccc
Q 019802          316 LIFCIFTWM  324 (335)
Q Consensus       316 ~IllD~~cs  324 (335)
                      .|++|++..
T Consensus       165 vIi~D~~dp  173 (295)
T d1inla_         165 VIIIDSTDP  173 (295)
T ss_dssp             EEEEEC---
T ss_pred             EEEEcCCCC
Confidence            699998664

>d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Bacillus subtilis [TaxId: 1423]

Probab=96.24  E-value=0.0044  Score=53.89  Aligned_cols=82  Identities=13%  Similarity=0.059  Sum_probs=63.0

Q ss_pred             CCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHh-C---CCcEEEEeccCCCCCC-CCCCCce
Q 019802          239 PKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLS-G---AANIEVLHGDFLNLDP-KDPAYSE  313 (335)
Q Consensus       239 ~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~-g---~~ni~~~~~D~~~~~~-~~~~fd~  313 (335)
                      .....+||-+|.|.|+.+..+... .+..+|+.+|+++.-++.+++-+... +   -++++++.+|+...-. ...+|| 
T Consensus        73 ~~~p~~vLiiGgG~G~~~~~~l~~-~~~~~i~~VEID~~Vi~~a~~~~~~~~~~~~d~r~~i~~~D~~~~l~~~~~~yD-  150 (274)
T d1iy9a_          73 HPNPEHVLVVGGGDGGVIREILKH-PSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKSENQYD-  150 (274)
T ss_dssp             SSSCCEEEEESCTTCHHHHHHTTC-TTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTCCSCEE-
T ss_pred             cCCcceEEecCCCCcHHHHHHHhc-CCcceEEEecCCHHHHHHHHHhChhhcccccCCCeEEEechHHHHHhhcCCCCC-
Confidence            345579999999999999988765 34569999999999999999987532 2   2569999999977443 344555 


Q ss_pred             EEEEEEecccc
Q 019802          314 VSLIFCIFTWM  324 (335)
Q Consensus       314 V~~IllD~~cs  324 (335)
                        .|++|++.-
T Consensus       151 --vIi~D~~~p  159 (274)
T d1iy9a_         151 --VIMVDSTEP  159 (274)
T ss_dssp             --EEEESCSSC
T ss_pred             --EEEEcCCCC
Confidence              699998763

>d2c7pa1 c.66.1.26 (A:1-327) DNA methylase HhaI {Haemophilus haemolyticus [TaxId: 726]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: C5 cytosine-specific DNA methylase, DCM
domain: DNA methylase HhaI
species: Haemophilus haemolyticus [TaxId: 726]

Probab=96.09  E-value=0.0035  Score=55.29  Aligned_cols=75  Identities=13%  Similarity=0.185  Sum_probs=56.2

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCceEEEEEEe
Q 019802          241 PGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVSLIFCI  320 (335)
Q Consensus       241 ~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~~~~~~fd~V~~IllD  320 (335)
                      .+.+|||++||.||.+.-+-.. + --.|.|+|+++..++..+.|..     +  ..++|..++...+  +..+|.+..=
T Consensus        10 ~~lrv~~lFsG~Gg~~~gl~~a-G-~~~v~a~e~d~~a~~~~~~N~~-----~--~~~~Di~~~~~~~--~~~~Dll~gg   78 (327)
T d2c7pa1          10 TGLRFIDLFAGLGGFRLALESC-G-AECVYSNEWDKYAQEVYEMNFG-----E--KPEGDITQVNEKT--IPDHDILCAG   78 (327)
T ss_dssp             TTCEEEEETCTTTHHHHHHHHT-T-CEEEEEECCCHHHHHHHHHHHS-----C--CCBSCGGGSCGGG--SCCCSEEEEE
T ss_pred             CCCeEEEECccccHHHHHHHHC-C-CeEEEEEeCCHHHHHHHHHHCC-----C--CCcCchhcCchhh--cceeeeeecc
Confidence            4789999999999999877543 2 2356789999999999999863     1  2358888876543  3345668889


Q ss_pred             cccccc
Q 019802          321 FTWMII  326 (335)
Q Consensus       321 ~~cs~~  326 (335)
                      |||-+-
T Consensus        79 pPCq~f   84 (327)
T d2c7pa1          79 FPCQAF   84 (327)
T ss_dssp             CCCTTT
T ss_pred             cccchh
Confidence            999643

>d2bm8a1 c.66.1.50 (A:2-233) Cephalosporin hydroxylase CmcI {Streptomyces clavuligerus [TaxId: 1901]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CmcI-like
domain: Cephalosporin hydroxylase CmcI
species: Streptomyces clavuligerus [TaxId: 1901]

Probab=96.08  E-value=0.0016  Score=55.43  Aligned_cols=96  Identities=17%  Similarity=0.151  Sum_probs=65.1

Q ss_pred             ccceEEecCchHHHHHH-HcCCCCCCEEEEEcCCCchHHHHHHHHc---CCCeEEEEEeCCHHHHHHHHHHHHHhCCCcE
Q 019802          219 VNGCVFLQGKASSMVAA-ALAPKPGWKVLDACSAPGNKTVHLAALM---KGKGKIVACELNKERVRRLKDTIKLSGAANI  294 (335)
Q Consensus       219 ~~g~~~iQd~~s~l~~~-~l~~~~g~~VLD~cagpG~kt~~la~~~---~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni  294 (335)
                      ..|.-.+|.+.-..+-. ++.-.....||++|++.|+-+..+++.+   +.+++|+++|+++.+.....     ...++|
T Consensus        57 w~G~p~~k~p~d~~~~~eli~~~KPk~ILEIGv~~GgS~~~~a~~l~~~~~~~kI~giDId~~~~~~~~-----~~~~~I  131 (232)
T d2bm8a1          57 WRGLRMLKDPDTQAVYHDMLWELRPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPA-----SDMENI  131 (232)
T ss_dssp             ETTEECCSCHHHHHHHHHHHHHHCCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCG-----GGCTTE
T ss_pred             ccceecccCHHHHHHHHHHHHHhCCCEEEEECCCCchHHHHHHHHHHhcCCCceEEecCcChhhhhhhh-----ccccce
Confidence            35777788765443332 3332345689999999999998888655   56799999999876544322     224679


Q ss_pred             EEEeccCCCCCC----CCCCCceEEEEEEecc
Q 019802          295 EVLHGDFLNLDP----KDPAYSEVSLIFCIFT  322 (335)
Q Consensus       295 ~~~~~D~~~~~~----~~~~fd~V~~IllD~~  322 (335)
                      +++.+|..+...    ....+|.   |++|..
T Consensus       132 ~~i~gDs~~~~~~~~l~~~~~dl---IfID~~  160 (232)
T d2bm8a1         132 TLHQGDCSDLTTFEHLREMAHPL---IFIDNA  160 (232)
T ss_dssp             EEEECCSSCSGGGGGGSSSCSSE---EEEESS
T ss_pred             eeeecccccHHHHHHHHhcCCCE---EEEcCC
Confidence            999999876543    2334664   788854

>d1g55a_ c.66.1.26 (A:) DNMT2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: C5 cytosine-specific DNA methylase, DCM
domain: DNMT2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.92  E-value=0.002  Score=57.13  Aligned_cols=78  Identities=13%  Similarity=0.069  Sum_probs=52.3

Q ss_pred             CEEEEEcCCCchHHHHHHHHcCCCe-EEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCCCceEEEEEEec
Q 019802          243 WKVLDACSAPGNKTVHLAALMKGKG-KIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPKDPAYSEVSLIFCIF  321 (335)
Q Consensus       243 ~~VLD~cagpG~kt~~la~~~~~~g-~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~~~~~~fd~V~~IllD~  321 (335)
                      .+|+|++||.||.+.-+-.. +=+. .|.|+|+++..++..+.|.     .+..++++|..++...+-.-..||.++--|
T Consensus         3 ~kv~~lF~G~Gg~~~gl~~a-G~~~~~~~a~E~~~~a~~~~~~n~-----~~~~~~~~di~~~~~~~~~~~~~Dll~ggp   76 (343)
T d1g55a_           3 LRVLELYSGVGGMHHALRES-CIPAQVVAAIDVNTVANEVYKYNF-----PHTQLLAKTIEGITLEEFDRLSFDMILMSP   76 (343)
T ss_dssp             EEEEEETCTTCHHHHHHHHH-TCSEEEEEEECCCHHHHHHHHHHC-----TTSCEECSCGGGCCHHHHHHHCCSEEEECC
T ss_pred             CEEEEcCcCccHHHHHHHHc-CCCCeEEEEEECCHHHHHHHHHHC-----CCCCcccCchhhCCHhHcCCCCccEEEeec
Confidence            47999999999998766443 2223 3779999999999988874     345577888887764321111355677899


Q ss_pred             ccccc
Q 019802          322 TWMII  326 (335)
Q Consensus       322 ~cs~~  326 (335)
                      ||-+-
T Consensus        77 PCq~f   81 (343)
T d1g55a_          77 PCQPF   81 (343)
T ss_dssp             C----
T ss_pred             ccccc
Confidence            99753

>d1o9ga_ c.66.1.29 (A:) rRNA methyltransferase AviRa {Streptomyces viridochromogenes [TaxId: 1938]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA methyltransferase AviRa
domain: rRNA methyltransferase AviRa
species: Streptomyces viridochromogenes [TaxId: 1938]

Probab=95.78  E-value=0.0039  Score=53.37  Aligned_cols=81  Identities=12%  Similarity=0.181  Sum_probs=59.7

Q ss_pred             CCCCEEEEEcCCCchHHHHHHHHcCC---------------------------------------CeEEEEEeCCHHHHH
Q 019802          240 KPGWKVLDACSAPGNKTVHLAALMKG---------------------------------------KGKIVACELNKERVR  280 (335)
Q Consensus       240 ~~g~~VLD~cagpG~kt~~la~~~~~---------------------------------------~g~i~a~D~~~~rl~  280 (335)
                      ..+..++|-|||+|...+..|-...+                                       ...|++.|++++.++
T Consensus        49 ~~~~~LlDPmCGSGTilIEAAlia~niaPGl~R~f~fe~w~~~~~~~w~~l~~~a~~~~~~~~~~~~~i~G~D~d~~ai~  128 (249)
T d1o9ga_          49 DGPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAGLTARELERREQSERFGKPSYLEAAQ  128 (249)
T ss_dssp             CSCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHCCHHHHHHHH
T ss_pred             CCCCceeccccCccHHHHHHHHHHhCcCcCcccchhhhcccccCHHHHHHHHHHHHHHHhccccccCCccccccCHHHHH
Confidence            34557999999999999876653210                                       135789999999998


Q ss_pred             HH---HHHHHHhCCCc-EEEEeccCCCCCCC-----CCCCceEEEEEEeccc
Q 019802          281 RL---KDTIKLSGAAN-IEVLHGDFLNLDPK-----DPAYSEVSLIFCIFTW  323 (335)
Q Consensus       281 ~~---~~~~~~~g~~n-i~~~~~D~~~~~~~-----~~~fd~V~~IllD~~c  323 (335)
                      .+   ++|+++.|+.. |.+.+.|+.+..+.     ....+   .|+++||.
T Consensus       129 ~A~~~r~n~~~Agl~~~i~i~~~d~f~~~~~~~~~~~~~~G---lIVtNPPY  177 (249)
T d1o9ga_         129 AARRLRERLTAEGGALPCAIRTADVFDPRALSAVLAGSAPD---VVLTDLPY  177 (249)
T ss_dssp             HHHHHHHHHHHTTSSCCEEEEECCTTCGGGHHHHHTTCCCS---EEEEECCG
T ss_pred             HHHHHHHHHHHcCCCceeeeeecchhccCcchhccCCCCCC---EEEeCCCc
Confidence            88   57999999864 88999998775531     12223   58889986

>d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.54  E-value=0.0099  Score=51.82  Aligned_cols=80  Identities=15%  Similarity=0.177  Sum_probs=61.0

Q ss_pred             CCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHh----CCCcEEEEeccCCCCCC-CCCCCceE
Q 019802          240 KPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLS----GAANIEVLHGDFLNLDP-KDPAYSEV  314 (335)
Q Consensus       240 ~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~----g~~ni~~~~~D~~~~~~-~~~~fd~V  314 (335)
                      ....+||-+|.|.|+.+..+... .+..+|+.+|+++..++.+++-+...    .-++++++.+|+...-. ...+||  
T Consensus        77 ~~pk~vLiiGgG~G~~~~~~l~~-~~~~~v~~vEiD~~Vv~~a~~~~~~~~~~~~d~rv~i~~~Da~~~l~~~~~~yD--  153 (285)
T d2o07a1          77 PNPRKVLIIGGGDGGVLREVVKH-PSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQDAFD--  153 (285)
T ss_dssp             SSCCEEEEEECTTSHHHHHHTTC-TTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTCSSCEE--
T ss_pred             cCcCeEEEeCCCchHHHHHHHHc-CCcceeeeccCCHHHHHHHHhhchhhccccCCCCceEEEccHHHHHhcCCCCCC--
Confidence            34578999999999999988765 34579999999999999999877532    22569999999977543 334454  


Q ss_pred             EEEEEeccc
Q 019802          315 SLIFCIFTW  323 (335)
Q Consensus       315 ~~IllD~~c  323 (335)
                       .|++|++-
T Consensus       154 -vIi~D~~~  161 (285)
T d2o07a1         154 -VIITDSSD  161 (285)
T ss_dssp             -EEEEECC-
T ss_pred             -EEEEcCCC
Confidence             69999754

>d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Caenorhabditis elegans [TaxId: 6239]

Probab=95.28  E-value=0.0076  Score=53.23  Aligned_cols=81  Identities=12%  Similarity=0.132  Sum_probs=61.0

Q ss_pred             CCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHh----CCCcEEEEeccCCCCCC-CCCCCceE
Q 019802          240 KPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLS----GAANIEVLHGDFLNLDP-KDPAYSEV  314 (335)
Q Consensus       240 ~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~----g~~ni~~~~~D~~~~~~-~~~~fd~V  314 (335)
                      ....+||-+|.|.|+.+..+... .+-.+|+.+|+++..++.+++-+...    .-++++++.+|+...-. ....||  
T Consensus       105 ~~pk~VLIiGgG~G~~~rellk~-~~v~~v~~VEID~~Vv~~a~~~~~~~~~~~~dprv~i~i~Da~~~l~~~~~~yD--  181 (312)
T d2b2ca1         105 PDPKRVLIIGGGDGGILREVLKH-ESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNHKNEFD--  181 (312)
T ss_dssp             SSCCEEEEESCTTSHHHHHHTTC-TTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHCTTCEE--
T ss_pred             CCCCeEEEeCCCchHHHHHHHHc-CCcceEEEEcccHHHHHHHHhhchhhccccCCCCeEEEEchHHHHHHhCCCCCC--
Confidence            34568999999999999888764 34469999999999999999876542    22569999999987543 334555  


Q ss_pred             EEEEEecccc
Q 019802          315 SLIFCIFTWM  324 (335)
Q Consensus       315 ~~IllD~~cs  324 (335)
                       +|++|++..
T Consensus       182 -vII~D~~dp  190 (312)
T d2b2ca1         182 -VIITDSSDP  190 (312)
T ss_dssp             -EEEECCC--
T ss_pred             -EEEEcCCCC
Confidence             699997643

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=95.18  E-value=0.018  Score=46.20  Aligned_cols=53  Identities=17%  Similarity=0.175  Sum_probs=41.0

Q ss_pred             HHcCCCCCCEEEEEcCCC-chHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCC
Q 019802          235 AALAPKPGWKVLDACSAP-GNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAA  292 (335)
Q Consensus       235 ~~l~~~~g~~VLD~cagp-G~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~  292 (335)
                      +...+++|++||-+|||| |..+.+++..++ ..+|+++|.+++|++.+++    +|.+
T Consensus        22 ~~~~~~~G~~VlV~GaG~iG~~~~~~ak~~G-a~~Vi~~~~~~~~~~~a~~----lGa~   75 (182)
T d1vj0a2          22 EYPESFAGKTVVIQGAGPLGLFGVVIARSLG-AENVIVIAGSPNRLKLAEE----IGAD   75 (182)
T ss_dssp             TCSSCCBTCEEEEECCSHHHHHHHHHHHHTT-BSEEEEEESCHHHHHHHHH----TTCS
T ss_pred             HHhCCCCCCEEEEECCCccchhheecccccc-ccccccccccccccccccc----ccce
Confidence            344678999999999886 556667787754 3489999999999987654    5764

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=95.11  E-value=0.014  Score=46.90  Aligned_cols=54  Identities=20%  Similarity=0.258  Sum_probs=42.1

Q ss_pred             HHcCCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCC
Q 019802          235 AALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAA  292 (335)
Q Consensus       235 ~~l~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~  292 (335)
                      ....+++|+.|+=+|||+.|..........+..+|+++|.+++|++.+++.    |.+
T Consensus        23 ~~~~~~~g~tVlI~G~GgvGl~ai~~ak~~G~~~Vi~vd~~~~kl~~Ak~~----GA~   76 (176)
T d1d1ta2          23 KTGKVKPGSTCVVFGLGGVGLSVIMGCKSAGASRIIGIDLNKDKFEKAMAV----GAT   76 (176)
T ss_dssp             TTSCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHH----TCS
T ss_pred             HhhCCCCCCEEEEECCCchhHHHHHHHHHcCCceEEEecCcHHHHHHHHhc----CCc
Confidence            345689999999999998887764444444457999999999999987665    764

>d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Chalcone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=95.05  E-value=0.022  Score=48.27  Aligned_cols=65  Identities=12%  Similarity=0.065  Sum_probs=47.8

Q ss_pred             HHHHHcC-CCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHh-CCCcEEEEeccCCCCC
Q 019802          232 MVAAALA-PKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLS-GAANIEVLHGDFLNLD  305 (335)
Q Consensus       232 l~~~~l~-~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~-g~~ni~~~~~D~~~~~  305 (335)
                      -++...+ .....+|||+|+|+|..+.++++.. ++.+++.+|+-+ .+       +.. ...+|+++.+|+.+..
T Consensus        71 ~l~~~~~~f~~~~~vlDiGGG~G~~~~~l~~~~-P~l~~~v~Dlp~-vi-------~~~~~~~ri~~~~gd~~~~~  137 (244)
T d1fp1d2          71 RMLEIYTGFEGISTLVDVGGGSGRNLELIISKY-PLIKGINFDLPQ-VI-------ENAPPLSGIEHVGGDMFASV  137 (244)
T ss_dssp             HHHHHCCTTTTCSEEEEETCTTSHHHHHHHHHC-TTCEEEEEECHH-HH-------TTCCCCTTEEEEECCTTTCC
T ss_pred             HHHHhcccccCCcEEEEecCCCcHHHHHHHHHC-CCCeEEEecchh-hh-------hccCCCCCeEEecCCccccc
Confidence            3444555 4556899999999999999999985 568999999742 22       222 2357999999997643

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.01  E-value=0.031  Score=44.26  Aligned_cols=55  Identities=25%  Similarity=0.280  Sum_probs=41.9

Q ss_pred             HHcCCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCc
Q 019802          235 AALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAAN  293 (335)
Q Consensus       235 ~~l~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~n  293 (335)
                      +..++++|+.||=+||||.|....+.....+..+|+++|.+++|++.+++    +|.+.
T Consensus        20 ~~~~~~~gd~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~~~~rl~~a~~----~Ga~~   74 (171)
T d1pl8a2          20 RRGGVTLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKE----IGADL   74 (171)
T ss_dssp             HHHTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHH----TTCSE
T ss_pred             HHhCCCCCCEEEEECCCccHHHHHHHHHHcCCceEEeccCCHHHHHHHHH----hCCcc
Confidence            45678999999999999887776444333444589999999999997654    57753

>d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: Methyltransferase mboII
species: Moraxella bovis [TaxId: 476]

Probab=95.00  E-value=0.016  Score=48.66  Aligned_cols=46  Identities=22%  Similarity=0.389  Sum_probs=38.8

Q ss_pred             CCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHH
Q 019802          239 PKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIK  287 (335)
Q Consensus       239 ~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~  287 (335)
                      -.+|+.|||.+||+|..+....++ +  .+-+++|++++=++.++++++
T Consensus       210 s~~gd~VlDpF~GSGTT~~aa~~~-~--R~~ig~El~~~y~~~a~~Rl~  255 (256)
T d1g60a_         210 SNPNDLVLDCFMGSGTTAIVAKKL-G--RNFIGCDMNAEYVNQANFVLN  255 (256)
T ss_dssp             CCTTCEEEESSCTTCHHHHHHHHT-T--CEEEEEESCHHHHHHHHHHHH
T ss_pred             CCCCCEEEECCCCchHHHHHHHHc-C--CeEEEEeCCHHHHHHHHHHHc
Confidence            368999999999999887654443 3  689999999999999999986

>d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

Probab=94.97  E-value=0.015  Score=46.21  Aligned_cols=55  Identities=18%  Similarity=0.255  Sum_probs=42.3

Q ss_pred             HHcCCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCc
Q 019802          235 AALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAAN  293 (335)
Q Consensus       235 ~~l~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~n  293 (335)
                      ...+++||++|+=+|+|+++....+.........|+++|.+++|++.++    ++|.+.
T Consensus        22 ~~a~~k~g~~VlI~G~Gg~g~~~~~~~~~~g~~~Vi~~~~~~~rl~~a~----~~GAd~   76 (175)
T d1cdoa2          22 NTAKVEPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAK----VFGATD   76 (175)
T ss_dssp             TTTCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHH----HTTCCE
T ss_pred             HhhCCCCCCEEEEEecCCccchHHHHHHHHhhchheeecchHHHHHHHH----HcCCcE
Confidence            3457899999999999997776654444445679999999999997755    578753

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.95  E-value=0.018  Score=45.58  Aligned_cols=52  Identities=13%  Similarity=-0.009  Sum_probs=39.4

Q ss_pred             HcCCCCCCEEEEEcCCCchH-HHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCc
Q 019802          236 ALAPKPGWKVLDACSAPGNK-TVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAAN  293 (335)
Q Consensus       236 ~l~~~~g~~VLD~cagpG~k-t~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~n  293 (335)
                      ...++||++||-+|+|+-|. +.+++..++  .+|+++|.+++|++.++    ++|.+.
T Consensus        22 ~~~~~~g~~vlI~GaG~vG~~a~q~ak~~G--~~vi~~~~~~~k~~~a~----~lGa~~   74 (168)
T d1piwa2          22 RNGCGPGKKVGIVGLGGIGSMGTLISKAMG--AETYVISRSSRKREDAM----KMGADH   74 (168)
T ss_dssp             HTTCSTTCEEEEECCSHHHHHHHHHHHHHT--CEEEEEESSSTTHHHHH----HHTCSE
T ss_pred             HhCcCCCCEEEEECCCCcchhHHHHhhhcc--ccccccccchhHHHHhh----ccCCcE
Confidence            45789999999999985444 446666653  68999999999998765    468753

>d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: m.RsrI N6 adenosine-specific DNA methyltransferase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=94.83  E-value=0.021  Score=48.61  Aligned_cols=49  Identities=12%  Similarity=0.106  Sum_probs=41.1

Q ss_pred             CCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhC
Q 019802          239 PKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSG  290 (335)
Q Consensus       239 ~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g  290 (335)
                      -.+|+.|||.+||+|.-+.+...+ +  .+.+++|+++.-++.++++++...
T Consensus       205 s~~gdiVLDpF~GSGTT~~Aa~~l-g--R~~ig~El~~~y~~~a~~Ri~~~~  253 (279)
T d1eg2a_         205 SHPGSTVLDFFAGSGVTARVAIQE-G--RNSICTDAAPVFKEYYQKQLTFLQ  253 (279)
T ss_dssp             SCTTCEEEETTCTTCHHHHHHHHH-T--CEEEEEESSTHHHHHHHHHHHHC-
T ss_pred             cCCCCEEEecCCCCcHHHHHHHHh-C--CeEEEEeCCHHHHHHHHHHHHHhh
Confidence            368999999999999987655554 3  589999999999999999998754

>d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

Probab=94.76  E-value=0.015  Score=46.68  Aligned_cols=54  Identities=11%  Similarity=0.065  Sum_probs=42.5

Q ss_pred             HHcCCCCCCEEEEEcCCCchHHH-HHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCc
Q 019802          235 AALAPKPGWKVLDACSAPGNKTV-HLAALMKGKGKIVACELNKERVRRLKDTIKLSGAAN  293 (335)
Q Consensus       235 ~~l~~~~g~~VLD~cagpG~kt~-~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~n  293 (335)
                      +...++||+.||=+|||+.|... +++..++ ..+|+++|.+++|++.+++    +|.+.
T Consensus        21 ~~a~~~~G~~VlV~GaGgvGl~a~~~ak~~G-~~~Vi~~d~~~~kl~~a~~----lGa~~   75 (174)
T d1p0fa2          21 NTAKVTPGSTCAVFGLGGVGFSAIVGCKAAG-ASRIIGVGTHKDKFPKAIE----LGATE   75 (174)
T ss_dssp             TTTCCCTTCEEEEECCSHHHHHHHHHHHHHT-CSEEEEECSCGGGHHHHHH----TTCSE
T ss_pred             HhhCCCCCCEEEEECCCchhHHHHHHHHHcC-CceeeccCChHHHHHHHHH----cCCcE
Confidence            45678999999999999887766 4555554 4689999999999988754    68753

>d2p41a1 c.66.1.25 (A:8-264) An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 {Dengue virus 2 [TaxId: 11060]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap methylase
domain: An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5
species: Dengue virus 2 [TaxId: 11060]

Probab=94.59  E-value=0.011  Score=50.22  Aligned_cols=36  Identities=17%  Similarity=0.099  Sum_probs=28.5

Q ss_pred             CCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeC
Q 019802          238 APKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACEL  274 (335)
Q Consensus       238 ~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~  274 (335)
                      -.+|+..|+|+||||||.+-.++++. +...+.++|+
T Consensus        63 ~~~~~~~vvDlG~~pGgws~~~a~~~-~v~~V~g~~i   98 (257)
T d2p41a1          63 LVTPEGKVVDLGCGRGGWSYYCGGLK-NVREVKGLTK   98 (257)
T ss_dssp             SSCCCEEEEEETCTTSHHHHHHHTST-TEEEEEEECC
T ss_pred             CccCCCeEEEecCCCChHHHHHHhhc-CCCceeEEEe
Confidence            35788899999999999999988773 2346777776

>d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=94.58  E-value=0.03  Score=48.74  Aligned_cols=79  Identities=18%  Similarity=0.130  Sum_probs=60.6

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHh----CCCcEEEEeccCCCCCC--CCCCCceE
Q 019802          241 PGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLS----GAANIEVLHGDFLNLDP--KDPAYSEV  314 (335)
Q Consensus       241 ~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~----g~~ni~~~~~D~~~~~~--~~~~fd~V  314 (335)
                      ...+||=+|.|.|+....+... .+-.+|+.+|+++..++.+++-+...    .-++++++.+|+...-.  .++.||  
T Consensus        80 ~pk~VLiiGgG~G~~~r~~l~~-~~~~~i~~VEiD~~Vi~~~~~~f~~~~~~~~~~r~~i~~~Da~~~l~~~~~~~yD--  156 (290)
T d1xj5a_          80 NPKKVLVIGGGDGGVLREVARH-ASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGSYD--  156 (290)
T ss_dssp             CCCEEEEETCSSSHHHHHHTTC-TTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCTTCEE--
T ss_pred             CCcceEEecCCchHHHHHHHhc-ccceeeEEecCCHHHHHHHHHhchhhhccccCCCcEEEEccHHHHHhhccccCcc--
Confidence            4568999999999999888764 34468999999999999999876432    23569999999876542  234565  


Q ss_pred             EEEEEeccc
Q 019802          315 SLIFCIFTW  323 (335)
Q Consensus       315 ~~IllD~~c  323 (335)
                       .|++|.+.
T Consensus       157 -vIi~D~~d  164 (290)
T d1xj5a_         157 -AVIVDSSD  164 (290)
T ss_dssp             -EEEECCCC
T ss_pred             -EEEEcCCC
Confidence             59999775

>d1booa_ c.66.1.11 (A:) m.PvuII N4 cytosine-specific DNA methyltransferase {Proteus vulgaris [TaxId: 585]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: m.PvuII N4 cytosine-specific DNA methyltransferase
species: Proteus vulgaris [TaxId: 585]

Probab=94.12  E-value=0.023  Score=49.15  Aligned_cols=49  Identities=14%  Similarity=0.070  Sum_probs=40.0

Q ss_pred             CCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhC
Q 019802          239 PKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSG  290 (335)
Q Consensus       239 ~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g  290 (335)
                      -.+|+.|||.+||+|..+.....+   +.+.+++|++++-++.+++++....
T Consensus       248 s~~gdiVlDpF~GSGTT~~AA~~l---gR~~Ig~El~~~y~~~a~~Rl~~~~  296 (320)
T d1booa_         248 TEPDDLVVDIFGGSNTTGLVAERE---SRKWISFEMKPEYVAASAFRFLDNN  296 (320)
T ss_dssp             CCTTCEEEETTCTTCHHHHHHHHT---TCEEEEEESCHHHHHHHHGGGSCSC
T ss_pred             ccCCCEEEecCCCCcHHHHHHHHc---CCcEEEEeCCHHHHHHHHHHHHhcc
Confidence            358999999999999887655444   3689999999999999988876543

>d2py6a1 c.66.1.56 (A:14-408) Methyltransferase FkbM {Methylobacillus flagellatus [TaxId: 405]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: FkbM-like
domain: Methyltransferase FkbM
species: Methylobacillus flagellatus [TaxId: 405]

Probab=94.08  E-value=0.063  Score=48.70  Aligned_cols=56  Identities=18%  Similarity=0.259  Sum_probs=48.1

Q ss_pred             cCCCCCCEEEEEcCCCchHHHHHHHHcCCC-eEEEEEeCCHHHHHHHHHHHHHhCCC
Q 019802          237 LAPKPGWKVLDACSAPGNKTVHLAALMKGK-GKIVACELNKERVRRLKDTIKLSGAA  292 (335)
Q Consensus       237 l~~~~g~~VLD~cagpG~kt~~la~~~~~~-g~i~a~D~~~~rl~~~~~~~~~~g~~  292 (335)
                      +.+.+++.++|+||--|..+..++...++. .+|+|+|.++.-.+.+++|++..+..
T Consensus       208 ~~l~kn~vfIDVGAniG~~s~~f~~~~~~~~~kV~aFEP~p~n~~~LkkNi~~n~~~  264 (395)
T d2py6a1         208 LRFSDSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINLQTLQNVLRRYTDT  264 (395)
T ss_dssp             CCCCSSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHHHHHHHHHHHHHTTTS
T ss_pred             cCcCCCCEEEECCcCCCHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHHHHhcccc
Confidence            346788999999999999998888776543 69999999999999999999987764

>d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

Probab=93.89  E-value=0.037  Score=43.92  Aligned_cols=54  Identities=17%  Similarity=0.235  Sum_probs=40.6

Q ss_pred             HHcCCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCC
Q 019802          235 AALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAA  292 (335)
Q Consensus       235 ~~l~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~  292 (335)
                      ....++||+.||=.|+|++|.+........+..+|+++|.+++|++.+++.    |..
T Consensus        22 ~~~~vk~GdtVlV~GaGG~G~~~~~~~~~~g~~~Vi~~~~~~~k~~~a~~~----Ga~   75 (176)
T d2jhfa2          22 KVAKVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEV----GAT   75 (176)
T ss_dssp             TTTCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHT----TCS
T ss_pred             HhhCCCCCCEEEEECCCCcHHHHHHHHHHcCCceEEeecCcHHHHHHHHHh----CCe
Confidence            345789999999999988776554433334457999999999999877554    664

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=93.59  E-value=0.097  Score=40.99  Aligned_cols=52  Identities=19%  Similarity=0.123  Sum_probs=39.7

Q ss_pred             HHcCCCCCCEEEEEcCCCchHHH-HHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCC
Q 019802          235 AALAPKPGWKVLDACSAPGNKTV-HLAALMKGKGKIVACELNKERVRRLKDTIKLSGAA  292 (335)
Q Consensus       235 ~~l~~~~g~~VLD~cagpG~kt~-~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~  292 (335)
                      ...++++|++||-+|+|+-|... +++..++  .+|+++|.++.|++.+++    +|..
T Consensus        20 ~~~~~~~g~~vlV~G~G~vG~~~~~~ak~~G--a~vi~v~~~~~r~~~a~~----~ga~   72 (170)
T d1e3ja2          20 RRAGVQLGTTVLVIGAGPIGLVSVLAAKAYG--AFVVCTARSPRRLEVAKN----CGAD   72 (170)
T ss_dssp             HHHTCCTTCEEEEECCSHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHHH----TTCS
T ss_pred             HHhCCCCCCEEEEEcccccchhhHhhHhhhc--ccccccchHHHHHHHHHH----cCCc
Confidence            45678999999999988655544 5565543  589999999999988766    4654

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=93.53  E-value=0.047  Score=43.57  Aligned_cols=54  Identities=19%  Similarity=0.217  Sum_probs=41.6

Q ss_pred             HHcCCCCCCEEEEEcCCC-chHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCc
Q 019802          235 AALAPKPGWKVLDACSAP-GNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAAN  293 (335)
Q Consensus       235 ~~l~~~~g~~VLD~cagp-G~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~n  293 (335)
                      +...+++|+.||=+|||| |-.+.+++..++ ...|++.|.+++|++.++    ++|.+.
T Consensus        22 ~~a~v~~G~~VlV~G~G~iGl~a~~~ak~~G-a~~Vi~~d~~~~r~~~a~----~~Ga~~   76 (174)
T d1e3ia2          22 NTAKVTPGSTCAVFGLGCVGLSAIIGCKIAG-ASRIIAIDINGEKFPKAK----ALGATD   76 (174)
T ss_dssp             TTSCCCTTCEEEEECCSHHHHHHHHHHHHTT-CSEEEEECSCGGGHHHHH----HTTCSE
T ss_pred             HhhCCCCCCEEEEECCChHHHHHHHHHHHhC-CceeeeeccchHHHHHHH----HhCCCc
Confidence            456789999999999999 555556666654 568999999999986654    468754

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=93.33  E-value=0.083  Score=41.99  Aligned_cols=54  Identities=22%  Similarity=0.146  Sum_probs=42.4

Q ss_pred             HHHcCCCCCCEEEEEcCCC-chHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCC
Q 019802          234 AAALAPKPGWKVLDACSAP-GNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAA  292 (335)
Q Consensus       234 ~~~l~~~~g~~VLD~cagp-G~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~  292 (335)
                      .+..+++||+.||=+|||+ |..+.+++..++ ..+|+++|.+++|++.++    ++|..
T Consensus        20 ~~~a~~~~g~~VlI~GaG~vGl~~~q~ak~~G-a~~Vi~~d~~~~r~~~a~----~lGa~   74 (174)
T d1jqba2          20 AELADIEMGSSVVVIGIGAVGLMGIAGAKLRG-AGRIIGVGSRPICVEAAK----FYGAT   74 (174)
T ss_dssp             HHHTTCCTTCCEEEECCSHHHHHHHHHHHTTT-CSCEEEECCCHHHHHHHH----HHTCS
T ss_pred             HHHhCCCCCCEEEEEcCCcchhhhhhhhhccc-ccccccccchhhhHHHHH----hhCcc
Confidence            4567899999999999988 566667777653 357999999999998875    46764

>d1af7a2 c.66.1.8 (A:92-284) Chemotaxis receptor methyltransferase CheR, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Chemotaxis receptor methyltransferase CheR, C-terminal domain
domain: Chemotaxis receptor methyltransferase CheR, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=93.11  E-value=0.066  Score=43.40  Aligned_cols=44  Identities=20%  Similarity=0.467  Sum_probs=32.7

Q ss_pred             CCCEEEEEcCCCchHH----HHHHHHcC---CCeEEEEEeCCHHHHHHHHH
Q 019802          241 PGWKVLDACSAPGNKT----VHLAALMK---GKGKIVACELNKERVRRLKD  284 (335)
Q Consensus       241 ~g~~VLD~cagpG~kt----~~la~~~~---~~g~i~a~D~~~~rl~~~~~  284 (335)
                      +.-+||++|||+|-=.    ..+.+.+.   ...+|+|.|+++..++.+++
T Consensus        24 ~~lrIwsaGCstGeE~YSlA~~l~e~~~~~~~~~~I~atDi~~~~l~~A~~   74 (193)
T d1af7a2          24 GEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARS   74 (193)
T ss_dssp             SCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHH
T ss_pred             CCeEEEEeCCCCchhHHHHHHHHHHhhhhcCCceEEEeecCChHHhhHhhc
Confidence            3448999999999854    33444332   24589999999999998873

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=92.94  E-value=0.081  Score=41.89  Aligned_cols=55  Identities=18%  Similarity=0.184  Sum_probs=41.7

Q ss_pred             HHHcCCCCCCEEEEEcCCCchHHH-HHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCc
Q 019802          234 AAALAPKPGWKVLDACSAPGNKTV-HLAALMKGKGKIVACELNKERVRRLKDTIKLSGAAN  293 (335)
Q Consensus       234 ~~~l~~~~g~~VLD~cagpG~kt~-~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~n  293 (335)
                      .+.++++||++||=+|||+-|... +++..++ ...|++.|.++.|++.+++    +|...
T Consensus        21 ~~~~~~~~g~~VlI~G~G~iG~~~~~~ak~~g-~~~v~~~~~~~~k~~~a~~----~Ga~~   76 (174)
T d1f8fa2          21 INALKVTPASSFVTWGAGAVGLSALLAAKVCG-ASIIIAVDIVESRLELAKQ----LGATH   76 (174)
T ss_dssp             HTTTCCCTTCEEEEESCSHHHHHHHHHHHHHT-CSEEEEEESCHHHHHHHHH----HTCSE
T ss_pred             HHhhCCCCCCEEEEeCCCHHHhhhhhcccccc-cceeeeeccHHHHHHHHHH----cCCeE
Confidence            345679999999999998776554 5666654 4589999999999988765    57653

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=92.15  E-value=0.2  Score=38.91  Aligned_cols=53  Identities=15%  Similarity=0.135  Sum_probs=40.5

Q ss_pred             HHcCCCCCCEEEEEcCCCchHHH-HHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCc
Q 019802          235 AALAPKPGWKVLDACSAPGNKTV-HLAALMKGKGKIVACELNKERVRRLKDTIKLSGAAN  293 (335)
Q Consensus       235 ~~l~~~~g~~VLD~cagpG~kt~-~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~n  293 (335)
                      +..++++|++||=+|+|+=|... +++..++  .+|+++|.+++|++.++    ++|.+.
T Consensus        21 ~~~~~~~g~~VlV~GaG~vG~~~~~~ak~~G--~~Vi~~~~~~~~~~~a~----~~Ga~~   74 (166)
T d1llua2          21 KQTNARPGQWVAISGIGGLGHVAVQYARAMG--LHVAAIDIDDAKLELAR----KLGASL   74 (166)
T ss_dssp             HHHTCCTTCEEEEECCSHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHH----HTTCSE
T ss_pred             HHhCCCCCCEEEEeeccccHHHHHHHHHHcC--CccceecchhhHHHhhh----ccCccc
Confidence            44678999999999988766554 5555543  69999999999998765    468753

>d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Isoflavone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=91.98  E-value=0.26  Score=41.30  Aligned_cols=55  Identities=15%  Similarity=0.146  Sum_probs=42.7

Q ss_pred             CCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCC-CcEEEEeccCCCCC
Q 019802          242 GWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGA-ANIEVLHGDFLNLD  305 (335)
Q Consensus       242 g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~-~ni~~~~~D~~~~~  305 (335)
                      ..+|||+|+|.|..+..+++.. ++.+++..|..+ -+       +..+. .+|+++.+|+.+..
T Consensus        81 ~~~vvDvGGG~G~~~~~l~~~~-P~l~~~v~Dlp~-vi-------~~~~~~~rv~~~~gD~f~~~  136 (244)
T d1fp2a2          81 LESIVDVGGGTGTTAKIICETF-PKLKCIVFDRPQ-VV-------ENLSGSNNLTYVGGDMFTSI  136 (244)
T ss_dssp             CSEEEEETCTTSHHHHHHHHHC-TTCEEEEEECHH-HH-------TTCCCBTTEEEEECCTTTCC
T ss_pred             ceEEEEecCCccHHHHHHHHhC-CCCeEEEecCHH-HH-------HhCcccCceEEEecCcccCC
Confidence            4679999999999999999986 457999999842 22       22333 57999999997743

>d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=91.97  E-value=0.086  Score=41.49  Aligned_cols=54  Identities=19%  Similarity=0.174  Sum_probs=40.5

Q ss_pred             HHcCCCCCCEEEEEcCCCchHHH-HHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCc
Q 019802          235 AALAPKPGWKVLDACSAPGNKTV-HLAALMKGKGKIVACELNKERVRRLKDTIKLSGAAN  293 (335)
Q Consensus       235 ~~l~~~~g~~VLD~cagpG~kt~-~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~n  293 (335)
                      +..+++||++||=.|||+.|... +++..++ ...|++.|.+++|++.++    ++|.+.
T Consensus        22 ~~~~~~~G~tVlI~GaGGvG~~aiq~ak~~G-~~~vi~~~~~~~k~~~ak----~lGa~~   76 (176)
T d2fzwa2          22 NTAKLEPGSVCAVFGLGGVGLAVIMGCKVAG-ASRIIGVDINKDKFARAK----EFGATE   76 (176)
T ss_dssp             TTTCCCTTCEEEEECCSHHHHHHHHHHHHHT-CSEEEEECSCGGGHHHHH----HHTCSE
T ss_pred             HhhCCCCCCEEEEecchhHHHHHHHHHHHHh-cCceEEEcccHHHHHHHH----HhCCcE
Confidence            45678999999999887655544 5666654 468999999999987755    568754

>d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=90.19  E-value=0.22  Score=39.08  Aligned_cols=50  Identities=18%  Similarity=0.225  Sum_probs=39.2

Q ss_pred             CCCCCCEEEEEcCCCchHHH-HHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCC
Q 019802          238 APKPGWKVLDACSAPGNKTV-HLAALMKGKGKIVACELNKERVRRLKDTIKLSGAA  292 (335)
Q Consensus       238 ~~~~g~~VLD~cagpG~kt~-~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~  292 (335)
                      ..+||+.||=.|+|+.|... +++..++ ...|+++|.+++|++.+++    +|..
T Consensus        29 ~~~~g~~vli~GaG~vG~~~~~~a~~~g-~~~vv~~~~~~~k~~~~~~----~ga~   79 (172)
T d1h2ba2          29 TLYPGAYVAIVGVGGLGHIAVQLLKVMT-PATVIALDVKEEKLKLAER----LGAD   79 (172)
T ss_dssp             TCCTTCEEEEECCSHHHHHHHHHHHHHC-CCEEEEEESSHHHHHHHHH----TTCS
T ss_pred             ccCCCCEEEEeCCChHHHHHHHHHHhhc-CcccccccchhHHHHHHhh----cccc
Confidence            46899999999999887775 5666654 4689999999999888774    5664

>d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=89.83  E-value=0.59  Score=35.88  Aligned_cols=53  Identities=21%  Similarity=0.112  Sum_probs=40.4

Q ss_pred             HHcCCCCCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCC
Q 019802          235 AALAPKPGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAA  292 (335)
Q Consensus       235 ~~l~~~~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~  292 (335)
                      ....++||++||=.|+||-|.......... ..+|+++|.+++|++.+++    +|.+
T Consensus        21 ~~~~~~~g~~vlv~G~G~iG~~a~~~a~~~-g~~v~~~~~~~~r~~~~k~----~Ga~   73 (168)
T d1rjwa2          21 KVTGAKPGEWVAIYGIGGLGHVAVQYAKAM-GLNVVAVDIGDEKLELAKE----LGAD   73 (168)
T ss_dssp             HHHTCCTTCEEEEECCSTTHHHHHHHHHHT-TCEEEEECSCHHHHHHHHH----TTCS
T ss_pred             HHhCCCCCCEEEEeecccchhhhhHHHhcC-CCeEeccCCCHHHhhhhhh----cCcc
Confidence            356789999999999998887764444433 3589999999999887644    6875

>d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=89.24  E-value=0.46  Score=36.84  Aligned_cols=54  Identities=19%  Similarity=0.241  Sum_probs=40.6

Q ss_pred             HHHcCCCCCCEEEEEcC-CCchH-HHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCC
Q 019802          234 AAALAPKPGWKVLDACS-APGNK-TVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAA  292 (335)
Q Consensus       234 ~~~l~~~~g~~VLD~ca-gpG~k-t~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~  292 (335)
                      ....++++|+.||=+|+ |+.|. +.+++..++ ..+|+++|.+++|++.+++    +|.+
T Consensus        20 l~~~~~~~g~~vlV~G~~G~vG~~~~~~~~~~g-~~~V~~~~~~~~~~~~~~~----~Ga~   75 (170)
T d1jvba2          20 VRKASLDPTKTLLVVGAGGGLGTMAVQIAKAVS-GATIIGVDVREEAVEAAKR----AGAD   75 (170)
T ss_dssp             HHHTTCCTTCEEEEETTTSHHHHHHHHHHHHHT-CCEEEEEESSHHHHHHHHH----HTCS
T ss_pred             HHHhCCCCCCEEEEEeccccceeeeeecccccc-cccccccccchhhHHHHHH----cCCc
Confidence            34567899999999996 65555 445666654 4689999999999988875    5765

>d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.79  E-value=0.37  Score=37.63  Aligned_cols=54  Identities=20%  Similarity=0.168  Sum_probs=39.7

Q ss_pred             HHcCCCCCCEEEEEcC-C-CchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcE
Q 019802          235 AALAPKPGWKVLDACS-A-PGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANI  294 (335)
Q Consensus       235 ~~l~~~~g~~VLD~ca-g-pG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni  294 (335)
                      ...++++|++||-.|+ | -|..+.+++..++  .++++.+.++++++.++    ++|.+.+
T Consensus        22 ~~~~~~~g~~VlV~Ga~G~vG~~aiq~a~~~G--~~vi~~~~~~~~~~~~~----~~Ga~~v   77 (174)
T d1yb5a2          22 HSACVKAGESVLVHGASGGVGLAACQIARAYG--LKILGTAGTEEGQKIVL----QNGAHEV   77 (174)
T ss_dssp             TTSCCCTTCEEEEETCSSHHHHHHHHHHHHTT--CEEEEEESSHHHHHHHH----HTTCSEE
T ss_pred             HHhCCCCCCEEEEEeccccccccccccccccC--ccccccccccccccccc----ccCcccc
Confidence            3456889999999986 3 4455567777764  68999999998887765    4788643

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=87.82  E-value=0.57  Score=36.27  Aligned_cols=53  Identities=25%  Similarity=0.237  Sum_probs=38.5

Q ss_pred             HHcCCCCCCEEEEEcCCC-chHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCc
Q 019802          235 AALAPKPGWKVLDACSAP-GNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAAN  293 (335)
Q Consensus       235 ~~l~~~~g~~VLD~cagp-G~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~n  293 (335)
                      +..+++||++||=.|+|+ |..+.+++..++  .+++++|.++++++.++    ++|.+.
T Consensus        24 ~~~~~~~G~~VlI~GaG~vG~~a~qlak~~G--a~~i~~~~~~~~~~~a~----~lGad~   77 (168)
T d1uufa2          24 RHWQAGPGKKVGVVGIGGLGHMGIKLAHAMG--AHVVAFTTSEAKREAAK----ALGADE   77 (168)
T ss_dssp             HHTTCCTTCEEEEECCSHHHHHHHHHHHHTT--CEEEEEESSGGGHHHHH----HHTCSE
T ss_pred             HHhCCCCCCEEEEeccchHHHHHHHHhhccc--ccchhhccchhHHHHHh----ccCCcE
Confidence            456789999999998876 334556666653  57788999999887654    568753

>d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=87.46  E-value=0.49  Score=39.31  Aligned_cols=57  Identities=12%  Similarity=0.082  Sum_probs=42.8

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCC
Q 019802          241 PGWKVLDACSAPGNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLD  305 (335)
Q Consensus       241 ~g~~VLD~cagpG~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~  305 (335)
                      ...+|||+|+|.|..+..+++.. ++.+++.+|+.+- ++..      ....+++++.+|+.+..
T Consensus        81 ~~~~vvDvGGG~G~~~~~l~~~~-P~l~~~v~Dlp~v-i~~~------~~~~r~~~~~~d~~~~~  137 (243)
T d1kyza2          81 GLKSLVDVGGGTGAVINTIVSKY-PTIKGINFDLPHV-IEDA------PSYPGVEHVGGDMFVSI  137 (243)
T ss_dssp             SCSEEEEETCTTSHHHHHHHHHC-TTSEEEEEECTTT-TTTC------CCCTTEEEEECCTTTCC
T ss_pred             CCcEEEEecCCCcHHHHHHHHHC-CCCeEEEcccHHh-hhhc------ccCCceEEecccccccC
Confidence            35689999999999999999986 4689999998542 2111      11246999999997643

>d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Escherichia coli [TaxId: 562]

Probab=87.11  E-value=0.66  Score=36.09  Aligned_cols=52  Identities=17%  Similarity=0.152  Sum_probs=39.3

Q ss_pred             HcCCCCCCEEEEEcCCC--chHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCc
Q 019802          236 ALAPKPGWKVLDACSAP--GNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAAN  293 (335)
Q Consensus       236 ~l~~~~g~~VLD~cagp--G~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~n  293 (335)
                      ..+++||+.||=.|+|.  |....+++..++  .+|++.+.++++++.++    .+|.+.
T Consensus        23 ~~~l~~g~~Vlv~ga~g~vG~~~iqlak~~G--a~Vi~~~~s~~k~~~~~----~lGa~~   76 (179)
T d1qora2          23 TYEIKPDEQFLFHAAAGGVGLIACQWAKALG--AKLIGTVGTAQKAQSAL----KAGAWQ   76 (179)
T ss_dssp             TSCCCTTCEEEESSTTBHHHHHHHHHHHHHT--CEEEEEESSHHHHHHHH----HHTCSE
T ss_pred             HhCCCCCCEEEEEccccccchHHHHHHHHhC--CeEeecccchHHHHHHH----hcCCeE
Confidence            45688999999875554  445667777754  69999999999998876    468753

>d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.19  E-value=0.5  Score=39.81  Aligned_cols=85  Identities=11%  Similarity=0.069  Sum_probs=64.6

Q ss_pred             CCEEEEEcCCCchHHHHHHHHcC--CCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCC-------CCCCc
Q 019802          242 GWKVLDACSAPGNKTVHLAALMK--GKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPK-------DPAYS  312 (335)
Q Consensus       242 g~~VLD~cagpG~kt~~la~~~~--~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~~~-------~~~fd  312 (335)
                      |.+|-=+.-|.+|.+..+++.+-  +..+|+.++.++++++.+.+.++..|. ++.++..|..+...-       ...|.
T Consensus         2 g~rVAlVTGas~GIG~a~A~~la~~~g~~Vi~~~r~~~~~~~~~~~l~~~~~-~~~~~~~Dvs~~~sv~~~~~~~~~~~g   80 (275)
T d1wmaa1           2 GIHVALVTGGNKGIGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQLQAEGL-SPRFHQLDIDDLQSIRALRDFLRKEYG   80 (275)
T ss_dssp             CCCEEEESSCSSHHHHHHHHHHHHHSSSEEEEEESSHHHHHHHHHHHHHTTC-CCEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCeEEEECCCCCHHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHhcCC-cEEEEEEecCCHHHHHHHHHHHHHhcC
Confidence            66776566677888888876542  346999999999999999999988876 578899999886631       13467


Q ss_pred             eEEEEEEeccccccc
Q 019802          313 EVSLIFCIFTWMIIM  327 (335)
Q Consensus       313 ~V~~IllD~~cs~~g  327 (335)
                      .+|.++.++..+..+
T Consensus        81 ~iDiLVnNAGi~~~~   95 (275)
T d1wmaa1          81 GLDVLVNNAGIAFKV   95 (275)
T ss_dssp             SEEEEEECCCCCCCT
T ss_pred             CcEEEEEcCCcCCCC
Confidence            888888888765443

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=82.67  E-value=0.43  Score=35.51  Aligned_cols=54  Identities=19%  Similarity=0.247  Sum_probs=39.2

Q ss_pred             EEEEEcCCCchHHHHHHHHcC-CCeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCC
Q 019802          244 KVLDACSAPGNKTVHLAALMK-GKGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLD  305 (335)
Q Consensus       244 ~VLD~cagpG~kt~~la~~~~-~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~  305 (335)
                      +|+=+|  -|..+.++++.+. .+..|+.+|.++++++.+.+.   .|   +.++.+|+.+..
T Consensus         2 ~IvI~G--~G~~G~~la~~L~~~g~~v~vid~d~~~~~~~~~~---~~---~~vi~Gd~~~~~   56 (132)
T d1lssa_           2 YIIIAG--IGRVGYTLAKSLSEKGHDIVLIDIDKDICKKASAE---ID---ALVINGDCTKIK   56 (132)
T ss_dssp             EEEEEC--CSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH---CS---SEEEESCTTSHH
T ss_pred             EEEEEC--CCHHHHHHHHHHHHCCCCcceecCChhhhhhhhhh---hh---hhhccCcccchh
Confidence            455444  4778888886653 345899999999999987654   33   568999998755

>d1y1pa1 c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolomyces salmonicolor [TaxId: 5005]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Aldehyde reductase II
species: Sporobolomyces salmonicolor [TaxId: 5005]

Probab=82.33  E-value=3.4  Score=35.18  Aligned_cols=83  Identities=13%  Similarity=0.070  Sum_probs=56.7

Q ss_pred             CCCCCEEEEEcCCCchHHHHHHHHc-CCCeEEEEEeCCHHHHHHHHHHHHHhCCC-cEEEEeccCCCCCCCCCCCceEEE
Q 019802          239 PKPGWKVLDACSAPGNKTVHLAALM-KGKGKIVACELNKERVRRLKDTIKLSGAA-NIEVLHGDFLNLDPKDPAYSEVSL  316 (335)
Q Consensus       239 ~~~g~~VLD~cagpG~kt~~la~~~-~~~g~i~a~D~~~~rl~~~~~~~~~~g~~-ni~~~~~D~~~~~~~~~~fd~V~~  316 (335)
                      .++|.+||=.|+ +|..+.|++..+ ..+.+|+++..+..+...++......... +..++.+|..+...-...+..++.
T Consensus         8 ~~~gk~VlVTG~-sGfIGs~l~~~Ll~~G~~V~~~vR~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~   86 (342)
T d1y1pa1           8 LPEGSLVLVTGA-NGFVASHVVEQLLEHGYKVRGTARSASKLANLQKRWDAKYPGRFETAVVEDMLKQGAYDEVIKGAAG   86 (342)
T ss_dssp             SCTTCEEEEETT-TSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHSTTTEEEEECSCTTSTTTTTTTTTTCSE
T ss_pred             CCCcCEEEEECC-CCHHHHHHHHHHHHCcCEEEEEeCCchhHHHHHHhhhccccccccEEEeccccchhhhhhhcccchh
Confidence            356889996665 599999998644 44468999999998888887766554443 355677888776544444555555


Q ss_pred             EEEecc
Q 019802          317 IFCIFT  322 (335)
Q Consensus       317 IllD~~  322 (335)
                      |+.-+.
T Consensus        87 v~~~a~   92 (342)
T d1y1pa1          87 VAHIAS   92 (342)
T ss_dssp             EEECCC
T ss_pred             hhhhcc
Confidence            654433

>d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative dehydrogenase ARPG836 (MGC4172)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.28  E-value=2.4  Score=35.04  Aligned_cols=83  Identities=16%  Similarity=0.123  Sum_probs=58.5

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHc-CCCeEEEEEeCCHHHHHHHHHHHHHhCCC-cEEEEeccCCCCCCC-------CCCC
Q 019802          241 PGWKVLDACSAPGNKTVHLAALM-KGKGKIVACELNKERVRRLKDTIKLSGAA-NIEVLHGDFLNLDPK-------DPAY  311 (335)
Q Consensus       241 ~g~~VLD~cagpG~kt~~la~~~-~~~g~i~a~D~~~~rl~~~~~~~~~~g~~-ni~~~~~D~~~~~~~-------~~~f  311 (335)
                      +|..||=.|+ .+|.+..+++.+ ....+|+.+|.++++++.+.+.++..+.+ ++.++++|..+...-       ...|
T Consensus         9 k~Kv~lITGa-s~GIG~aiA~~la~~G~~Vv~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~v~~~~~~~   87 (257)
T d1xg5a_           9 RDRLALVTGA-SGGIGAAVARALVQQGLKVVGCARTVGNIEELAAECKSAGYPGTLIPYRCDLSNEEDILSMFSAIRSQH   87 (257)
T ss_dssp             TTCEEEEEST-TSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCSSEEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCC-CCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEEccCCCHHHHHHHHHHHHHhc
Confidence            3566776665 577788787755 34569999999999999999999988764 588889999875421       1234


Q ss_pred             ceEEEEEEecccc
Q 019802          312 SEVSLIFCIFTWM  324 (335)
Q Consensus       312 d~V~~IllD~~cs  324 (335)
                      ..+|.++-.++..
T Consensus        88 g~iD~lVnnAg~~  100 (257)
T d1xg5a_          88 SGVDICINNAGLA  100 (257)
T ss_dssp             CCCSEEEECCCCC
T ss_pred             CCCCEEEeccccc
Confidence            4555565555444

>d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Thermus thermophilus [TaxId: 274]

Probab=81.86  E-value=0.91  Score=35.27  Aligned_cols=54  Identities=24%  Similarity=0.300  Sum_probs=39.0

Q ss_pred             HHcCCCCCCEEEEEcC-CC-chHHHHHHHHcCCCeEEEEEeCCHHHHHHHHHHHHHhCCCcE
Q 019802          235 AALAPKPGWKVLDACS-AP-GNKTVHLAALMKGKGKIVACELNKERVRRLKDTIKLSGAANI  294 (335)
Q Consensus       235 ~~l~~~~g~~VLD~ca-gp-G~kt~~la~~~~~~g~i~a~D~~~~rl~~~~~~~~~~g~~ni  294 (335)
                      +..+++||++||=.|+ |+ |..+.+++..++  .+|++++.++++++.++    .+|.+.+
T Consensus        21 ~~~~~~~g~~VlI~ga~G~vG~~aiqlak~~G--~~vi~~~~~~~~~~~~~----~lGa~~~   76 (171)
T d1iz0a2          21 KRAQARPGEKVLVQAAAGALGTAAVQVARAMG--LRVLAAASRPEKLALPL----ALGAEEA   76 (171)
T ss_dssp             HHTTCCTTCEEEESSTTBHHHHHHHHHHHHTT--CEEEEEESSGGGSHHHH----HTTCSEE
T ss_pred             HHhCCCCCCEEEEEeccccchhhhhhhhcccc--ccccccccccccccccc----cccccee
Confidence            3457899999998775 44 344556777653  58999999999888765    4788643

>d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=80.06  E-value=2.8  Score=34.53  Aligned_cols=83  Identities=12%  Similarity=0.045  Sum_probs=59.1

Q ss_pred             CCCEEEEEcCCCchHHHHHHHHcCC-CeEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCCCCC-------CCCCc
Q 019802          241 PGWKVLDACSAPGNKTVHLAALMKG-KGKIVACELNKERVRRLKDTIKLSGAANIEVLHGDFLNLDPK-------DPAYS  312 (335)
Q Consensus       241 ~g~~VLD~cagpG~kt~~la~~~~~-~g~i~a~D~~~~rl~~~~~~~~~~g~~ni~~~~~D~~~~~~~-------~~~fd  312 (335)
                      .+..+|=.| |.+|.+..++..+.. ..+|+.+|.++++++.+.+.++..|. ++..+..|.++...-       ...|.
T Consensus         9 enKvalITG-as~GIG~a~a~~la~~Ga~V~~~~r~~~~l~~~~~~l~~~g~-~~~~~~~Dvt~~~~v~~~~~~~~~~~g   86 (251)
T d2c07a1           9 ENKVALVTG-AGRGIGREIAKMLAKSVSHVICISRTQKSCDSVVDEIKSFGY-ESSGYAGDVSKKEEISEVINKILTEHK   86 (251)
T ss_dssp             SSCEEEEES-TTSHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHTTTC-CEEEEECCTTCHHHHHHHHHHHHHHCS
T ss_pred             CCCEEEEeC-CCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCC-cEEEEEccCCCHHHHHHHHHHHHHhcC
Confidence            355666555 567788888886643 45999999999999999999988876 578889999875421       12455


Q ss_pred             eEEEEEEeccccc
Q 019802          313 EVSLIFCIFTWMI  325 (335)
Q Consensus       313 ~V~~IllD~~cs~  325 (335)
                      .+|.++-.++...
T Consensus        87 ~iDilvnnag~~~   99 (251)
T d2c07a1          87 NVDILVNNAGITR   99 (251)
T ss_dssp             CCCEEEECCCCCC
T ss_pred             Cceeeeecccccc
Confidence            6666666655443