Citrus Sinensis ID: 019806

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-----
Protein Sequence
MPNLFSKDSGISSACSASMNGVSGPLWGSSSESVVQQSSMSGCLSLKMAVPRQQFANTKQLSFQFQDQESSSTQSTGQSCSKEACVKDDNPSRQSVVSAPPGFNGIHVKPVGGHSKLASSMGPHDFVFTPPHVDYNQSVAPFQLHYAEPYFSGLLSPFLPPQAMIHHPQMMGMAPARVPLPLELAEDEPIYVNAKQYRAILRRRQYRAKLEAQNKLVKGRKPYLHESRHAHAMNRARGSGGRFLNTKKVPESKRNLTNNELDMSESEAHRENYKDGGSTTSCSDITSASNSEDIFQQPEFGFSGYSSIGSRSMQGCSATMNGDGNIHRFLSSVDG
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEcHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHcccccccccccccccHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccccccccccccccccccccccccccccEEcccccHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEcccccccccccccccccccccccccccccccccccccccccccccccccEEEcHHHHHHHHHHHHHHHHHHHHcccHHcccccHcHHHHHHHHHccccccccEEcccHHHHcccccccccccccccccccccccccccccccccccccccccccccccccEcccccccccccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
mpnlfskdsgissacsasmngvsgplwgsssesvvqqssmsgclslkmavprqqfantkqlsfqfqdqessstqstgqscskeacvkddnpsrqsvvsappgfngihvkpvgghsklassmgphdfvftpphvdynqsvapfqlhyaepyfsgllspflppqamihhpqmmgmaparvplplelaedepiyvNAKQYRAILRRRQYRAKLEAQNKLvkgrkpylhesRHAHAMnrargsggrflntkkvpeskrnltnneldmseseahrenykdggsttscsditsasnsedifqqpefgfsgyssigsrsmqgcsatmngdgniHRFLSSVDG
Flexible Loop (DISEMBL)
MPNLFSKDSGISSACSASMNGVSGPLWGSSSESVVQQSSMSGCLSLKMAVPRQQFANTKQLSFQFQDQessstqstgqscskeacvkddnpsrqsvVSAPPGFNGIHVKPVGGHSKLASSMGPHDFVFTPPHVDYNQSVAPFQLHYAEPYFSGLLSPFLPPQAMIHHPQMMGMAPARVPLPLELAEDEPIYVNAKQYRAILRRRQYRAKLEaqnklvkgrkpylhesrhahamnrargsggrflntkkvpeskrnltnneldmseseahrenykdggsTTSCSDITSASNSEDIFQQPEFGFSGYSSIGSRSMQGCSATMNGDGNIHRFLSSVDG
Low Complexity Region (SEG)
MPNLFSKDSGISSACSASMNGVSGPLWGsssesvvqqssmsGCLSLKMAVPRQQFANTKqlsfqfqdqessstqstgqscsKEACVKDDNPSRQSVVSAPPGFNGIHVKPVGGHSKLASSMGPHDFVFTPPHVDYNQSVAPFQLHYAEPYFSGLLSPFLPPQAMIHHPQMMGMAPARVPLPLELAEDEPIYVNAKQYRAILRRRQYRAKLEAQNKLVKGRKPYLHESRHAHAMNRARGSGGRFLNTKKVPESKRNLTNNELDMSESEAHRENYKDGGSTTSCSDITSASNSEDIFQQPEFGFSGYSSIGSRSMQGCSATMNGDGNIHRFLSSVDG
Disordered region (IsUnstruct)
***************************************************************************************************************************HDFVFTPPHVDYNQSVAPFQLHYAEPYFSGLLSPFLPPQAMIHHPQMMGMAPARVPLPLELAEDEPIYVNAKQYRAILRRRQYRAKLE****************************************************************************************************************************
Disordered Region (DISOPRED)
****************************************************************************************************************************************************************************************AEDEPIYVNAKQYRAILRRRQY*********************************************************************************************************************************
Disordered Region (DISEMBL)
***********SSACSASMNGVSGPL**************SGCLSLKMAVPRQQFANTKQLSF*********************************VSAPPGFNGIHVKPVGGHSKLASSMGPHDFVFTPPHVDYNQSVAPFQLHYAEPYFSGLLSPFLPPQAMIHHPQMMGMAPARVPLPLELAEDEPIYVNAKQYRAILRRRQYRAKLEAQNKLVKGRKPYLHESRHAHAMNRARGSGGRFLNTKKVPESKRNLTNNELD***************************NSEDIFQQPEFGFSGYSSIGSRSMQGCSATMNGDGNIHRFLSSVDG
Disordered Region (DISPRO)
*********GISSACSASMNGVSGPLWG****************SLKMAVPRQQFANTKQLS**************************************************************DFVFTPPHVDYNQSVAPFQLHYAEPYFSGLLSPFLPPQAMIHHPQMMGMAPARVPLPLELAEDEPIYVNAKQYRAILRRRQYRAKLEAQNKLVKGRKPYLHESRHAHAMNRARGSGGRFLNT*********************************************************G***IG*R************************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MPNLFSKDSGISSACSASMNGVSGPLWGSSSESVVQQSSMSGCLSLKMAVPRQQFANTKQLSFQFQDQESSSTQSTGQSCSKEACVKDDNPSRQSVVSAPPGFNGIHVKPVGGHSKLASSMGPHDFVFTPPHVDYNQSVAPFQLHYAEPYFSGLLSPFLPPQAMIHHPQMMGMAPARVPLPLELAEDEPIYVNAKQYRAILRRRQYRAKLEAQNKLVKGRKPYLHESRHAHAMNRARGSGGRFLNTKKVPESKRNLTNNELDMSESEAHRENYKDGGSTTSCSDITSASNSEDIFQQPEFGFSGYSSIGSRSMQGCSATMNGDGNIHRFLSSVDG
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	335	2.2.26 [Sep-21-2011]
Q93ZH2	340	Nuclear transcription fac	yes	no	0.937	0.923	0.460	9e-61
Q9LNP6	328	Nuclear transcription fac	no	no	0.835	0.853	0.448	5e-49
Q9LVJ7	308	Nuclear transcription fac	no	no	0.8	0.870	0.437	2e-43
Q9SYH4	308	Nuclear transcription fac	no	no	0.826	0.899	0.406	2e-41
Q84JP1	190	Nuclear transcription fac	no	no	0.358	0.631	0.540	4e-29
Q945M9	303	Nuclear transcription fac	no	no	0.304	0.336	0.539	3e-26
Q8VY64	198	Nuclear transcription fac	no	no	0.292	0.494	0.532	2e-24
Q9LXV5	272	Nuclear transcription fac	no	no	0.301	0.371	0.528	2e-23
P23708	346	Nuclear transcription fac	yes	no	0.229	0.222	0.625	2e-21
P23511	347	Nuclear transcription fac	yes	no	0.229	0.221	0.625	2e-21

>sp|Q93ZH2|NFYA3_ARATH Nuclear transcription factor Y subunit A-3 OS=Arabidopsis thaliana GN=NFYA3 PE=2 SV=2

 Score =  234 bits (596), Expect = 9e-61,   Method: Compositional matrix adjust.
 Identities = 158/343 (46%), Positives = 197/343 (57%), Gaps = 29/343 (8%)

Query: 4   LFSKDSGISSACSASMNGVSGPLWGSS-SESVVQQSSMSGCLSLKMAVPRQQFANTKQLS 62
           L  KDS   S        +S   WG   ++SV  +   +  LSLK+         TKQ+S
Sbjct: 6   LNKKDSATHSTLPYLNTSIS---WGVVPTDSVANRRGSAESLSLKVDSRPGHIQTTKQIS 62

Query: 63  FQFQDQESSSTQSTGQSCSKEACVKDDNPSRQSVVSAPPGFNGIHVKPVGGHSKLASSMG 122
           FQ  DQ+SSSTQSTGQS ++ A   DDNPSRQ   SA  G      K    + K  S  G
Sbjct: 63  FQ--DQDSSSTQSTGQSYTEVASSGDDNPSRQISFSAKSGSEITQRKGFASNPKQGSMTG 120

Query: 123 PHDFVFTPPHVDYNQSVAPFQLHYAEPYFSGLLSPFLPPQAMIHHPQMMGMAPARVPLPL 182
             +  F P       + A F  HYA+P++ GLL+    PQA   +PQM+ M P RVPLP 
Sbjct: 121 FPNIHFAP-------AQANFSFHYADPHYGGLLAATYLPQAPTCNPQMVSMIPGRVPLPA 173

Query: 183 ELAEDEPIYVNAKQYRAILRRRQYRAKLEAQNKLVKGRKPYLHESRHAHAMNRARGSGGR 242
           EL E +P++VNAKQY AI+RRRQ RAKLEAQNKL++ RKPYLHESRH HA+ R RGSGGR
Sbjct: 174 ELTETDPVFVNAKQYHAIMRRRQQRAKLEAQNKLIRARKPYLHESRHVHALKRPRGSGGR 233

Query: 243 FLNTKKVPESKRNL-------------TNNELDMSESEAHR-ENYKDGGSTTSCSDITSA 288
           FLNTKK+ +                   N + +MS  EAH  +N KD  STTS SDITS 
Sbjct: 234 FLNTKKLLQESEQAAAREQEQDKLGQQVNRKTNMSRFEAHMLQNNKDRSSTTSGSDITSV 293

Query: 289 SNSEDIFQQPEFGFSGYSSIGSRSM--QGCSATMNGDGNIHRF 329
           S+  DIF   EF FSG+ +  +R+M   G S  M+G G++H F
Sbjct: 294 SDGADIFGHTEFQFSGFPTPINRAMLVHGQSNDMHGGGDMHHF 336

Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9LNP6|NFYA8_ARATH Nuclear transcription factor Y subunit A-8 OS=Arabidopsis thaliana GN=NFYA8 PE=2 SV=2

 Score =  195 bits (495), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 145/323 (44%), Positives = 183/323 (56%), Gaps = 43/323 (13%)

Query: 27  WGSSSESVVQQSSMSGCLSLKMAVPR-QQFANTKQLSFQFQDQESSSTQSTGQSCSKEAC 85
           WG  ++S    + ++  LSLK+   R ++  NTK +SFQ  DQ+SSST S+ QS +    
Sbjct: 25  WGLPTKS----NGVTESLSLKVVDARPERLINTKNISFQ--DQDSSSTLSSAQSSNDVTS 78

Query: 86  VKDDNPSRQSVVSAP----PGFNGIHVKPVGGHSKLASSMGPHDFVFTPPHVDYNQSVAP 141
             DDNPSRQ    A      GF     K     S  +S+ G  D   +P       S A 
Sbjct: 79  SGDDNPSRQISFLAHSDVCKGFEETQRKRFAIKSG-SSTAGIADIHSSP-------SKAN 130

Query: 142 FQLHYAEPYFSGLLSPFLPPQAMIHHPQMMGMAPARVPLPLELAEDEPIYVNAKQYRAIL 201
           F  HYA+P+F GL+     PQA I +PQM      RVPLP +L E+EP++VNAKQ+ AI+
Sbjct: 131 FSFHYADPHFGGLMPAAYLPQATIWNPQM-----TRVPLPFDLIENEPVFVNAKQFHAIM 185

Query: 202 RRRQYRAKLEAQNKLVKGRKPYLHESRHAHAMNRARGSGGRFLNTKKVPESKRNLTNNEL 261
           RRRQ RAKLEAQNKL+K RKPYLHESRH HA+ R RGSGGRFLNTKK+ ES    T+ + 
Sbjct: 186 RRRQQRAKLEAQNKLIKARKPYLHESRHVHALKRPRGSGGRFLNTKKLQES----TDPKQ 241

Query: 262 DMSESEAHR------------ENYKD-GGSTTSCSDITSASNSEDIFQQPEFGFSGYSSI 308
           DM   + H             +N  D   STTS SDITSAS+S ++F   EF  S   S 
Sbjct: 242 DMPIQQQHATGNMSRFVLYQLQNSNDCDCSTTSRSDITSASDSVNLFGHSEFLISDCPSQ 301

Query: 309 GSRSM--QGCSATMNGDGNIHRF 329
            + +M   G S  M+G  N H F
Sbjct: 302 TNPTMYVHGQSNDMHGGRNTHHF 324

Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LVJ7|NFYA6_ARATH Nuclear transcription factor Y subunit A-6 OS=Arabidopsis thaliana GN=NFYA6 PE=2 SV=1

 Score =  176 bits (447), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 129/295 (43%), Positives = 160/295 (54%), Gaps = 27/295 (9%)

Query: 29  SSSESVVQQSSMSGCLSLKMAVPRQQFANTKQLSFQFQDQESSSTQSTGQSCSKEACVKD 88
           S   SV   S++ G  SL            KQ  FQ Q  +SSSTQSTG     E     
Sbjct: 17  SWDNSVFTNSNVQGSSSLTDNNTLSLTMEMKQTGFQMQHYDSSSTQSTGGESYSEVASLS 76

Query: 89  DNPSRQS---VVSAPPGFNGIHVKPVGGHSKLASSMGPHDFVFTPPHVDYNQSVAPFQLH 145
           +  +R     VV+   G+      P+G HS    S    D V  P         A + LH
Sbjct: 77  EPTNRYGHNIVVTHLSGYKENPENPIGSHSISKVSQ---DSVVLP------IEAASWPLH 127

Query: 146 -YAEPYFSGLLSPFLPPQAMIHHPQMMGMAPARVPLPLELAEDEPIYVNAKQYRAILRRR 204
               P+F+G LS     Q  + HPQ+ G+ P+R+PLP  + E+EPI+VNAKQY+AILRRR
Sbjct: 128 GNVTPHFNGFLSFPYASQHTVQHPQIRGLVPSRMPLPHNIPENEPIFVNAKQYQAILRRR 187

Query: 205 QYRAKLEAQNKLVKGRKPYLHESRHAHAMNRARGSGGRFLNTKKVPESKRNLT------- 257
           + RAKLEAQNKL+K RKPYLHESRH HA+ R RGSGGRFLNTKK  ES  +L+       
Sbjct: 188 ERRAKLEAQNKLIKVRKPYLHESRHLHALKRVRGSGGRFLNTKKHQESNSSLSPPFLIPP 247

Query: 258 ----NNELDMSESEAHRENYKDGGSTTSCSDITSASNSEDIFQQ-PEFGFSGYSS 307
               N+     + +  R       STTSCSDIT   N+ D+FQQ P+F FSGY S
Sbjct: 248 HVFKNSPGKFRQMDISRGGVVSSVSTTSCSDIT--GNNNDMFQQNPQFRFSGYPS 300

Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SYH4|NFYA5_ARATH Nuclear transcription factor Y subunit A-5 OS=Arabidopsis thaliana GN=NFYA5 PE=2 SV=1

 Score =  169 bits (429), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 118/290 (40%), Positives = 164/290 (56%), Gaps = 13/290 (4%)

Query: 27  WGSSSESVVQ--QSSMSGCLSLKMAVPRQQFANTKQLSFQFQDQESSSTQSTGQSCSKEA 84
           WG+S  +     Q S S  L+  M +   Q    K    Q Q+Q+S+S+QST +      
Sbjct: 12  WGNSMPTTNSNIQGSESFSLTKDMIMSTTQLPAMKHSGLQLQNQDSTSSQSTEEESGGGE 71

Query: 85  CVKDDNPSRQ--SVVSAP-PGFNGIHVKPVGGHSK--LASSMGPHDFVFTPPHVDYNQSV 139
                   R   S+V+    G+     KP+  ++K    SSM   D VF  P        
Sbjct: 72  VASFGEYKRYGCSIVNNNLSGYIENLGKPIENYTKSITTSSMVSQDSVFPAP----TSGQ 127

Query: 140 APFQLHYAEP-YFSGLLSP-FLPPQAMIHHPQMMGMAPARVPLPLELAEDEPIYVNAKQY 197
             + L  AE  +F+G L+P +      + H +MMG+  +RVPLP  + E+EPI+VNAKQY
Sbjct: 128 ISWSLQCAETSHFNGFLAPEYASTPTALPHLEMMGLVSSRVPLPHHIQENEPIFVNAKQY 187

Query: 198 RAILRRRQYRAKLEAQNKLVKGRKPYLHESRHAHAMNRARGSGGRFLNTKKVPESKRNLT 257
            AILRRR++RAKLEAQNKL+K RKPYLHESRH HA+ RARGSGGRFLNTKK+ ES  +L 
Sbjct: 188 HAILRRRKHRAKLEAQNKLIKCRKPYLHESRHLHALKRARGSGGRFLNTKKLQESSNSLC 247

Query: 258 NNELDMSESEAHRENYKDGGSTTSCSDITSASNSEDIFQQPEFGFSGYSS 307
           ++++   ++ +   +    G  +S    +S SN  ++FQ P+F FSGY S
Sbjct: 248 SSQMANGQNFSMSPHGGGSGIGSSSISPSSNSNCINMFQNPQFRFSGYPS 297

Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters (By similarity). Involved in the blue light (BL) and abscisic acid (ABA) signaling pathways.

Arabidopsis thaliana (taxid: 3702)

>sp|Q84JP1|NFYA7_ARATH Nuclear transcription factor Y subunit A-7 OS=Arabidopsis thaliana GN=NFYA7 PE=2 SV=1

 Score =  129 bits (323), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 67/124 (54%), Positives = 85/124 (68%), Gaps = 4/124 (3%)

Query: 138 SVAPFQLHYAEPYFSGLLSPFLPPQAMIH-HPQMMGMAPARVPLPLELAEDEPIYVNAKQ 196
           S+AP Q  Y +PY+  + +P  PPQ     H Q+MG+    VPLP +  E EP++VNAKQ
Sbjct: 52  SMAPGQYPYPDPYYRSIFAP--PPQPYTGVHLQLMGVQQQGVPLPSDAVE-EPVFVNAKQ 108

Query: 197 YRAILRRRQYRAKLEAQNKLVKGRKPYLHESRHAHAMNRARGSGGRFLNTKKVPESKRNL 256
           Y  ILRRRQ RA+LE+QNK++K RKPYLHESRH HA+ R RG GGRFLN KK  E   + 
Sbjct: 109 YHGILRRRQSRARLESQNKVIKSRKPYLHESRHLHAIRRPRGCGGRFLNAKKEDEHHEDS 168

Query: 257 TNNE 260
           ++ E
Sbjct: 169 SHEE 172

Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.

Arabidopsis thaliana (taxid: 3702)

>sp|Q945M9|NFYA9_ARATH Nuclear transcription factor Y subunit A-9 OS=Arabidopsis thaliana GN=NFYA9 PE=2 SV=1

 Score =  119 bits (299), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 61/113 (53%), Positives = 76/113 (67%), Gaps = 11/113 (9%)

Query: 146 YAEPYFSGLLSPFLPPQAMIHHPQMM----GMAPARVPLPLELAEDEPIYVNAKQYRAIL 201
           Y +PY++G++       A  HHP       GM  +R+PLP E+A+ EP++VNAKQY+AIL
Sbjct: 127 YQDPYYAGVMG------AYGHHPLGFVPYGGMPHSRMPLPPEMAQ-EPVFVNAKQYQAIL 179

Query: 202 RRRQYRAKLEAQNKLVKGRKPYLHESRHAHAMNRARGSGGRFLNTKKVPESKR 254
           RRRQ RAK E + KL+K RKPYLHESRH HAM R RG+GGRF        SKR
Sbjct: 180 RRRQARAKAELEKKLIKSRKPYLHESRHQHAMRRPRGTGGRFAKKTNTEASKR 232

Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8VY64|NFYA4_ARATH Nuclear transcription factor Y subunit A-4 OS=Arabidopsis thaliana GN=NFYA4 PE=2 SV=1

 Score =  113 bits (282), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 58/109 (53%), Positives = 73/109 (66%), Gaps = 11/109 (10%)

Query: 146 YAEPYFSGLLSPFLPPQAMIHHP------QMMGMAPARVPLPLELAEDEPIYVNAKQYRA 199
           Y +PY+  + +     QA + HP      Q+MGM    VPL  +  E EP++VNAKQY  
Sbjct: 55  YPDPYYRSVFAQ----QAYLPHPYPGVQLQLMGMQQPGVPLQCDAVE-EPVFVNAKQYHG 109

Query: 200 ILRRRQYRAKLEAQNKLVKGRKPYLHESRHAHAMNRARGSGGRFLNTKK 248
           ILRRRQ RAKLEA+N+ +K +KPY+HESRH HA+ R RG GGRFLN KK
Sbjct: 110 ILRRRQSRAKLEARNRAIKAKKPYMHESRHLHAIRRPRGCGGRFLNAKK 158

Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LXV5|NFYA1_ARATH Nuclear transcription factor Y subunit A-1 OS=Arabidopsis thaliana GN=NFYA1 PE=2 SV=1

 Score =  110 bits (274), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 55/104 (52%), Positives = 71/104 (68%), Gaps = 3/104 (2%)

Query: 146 YAEPYFSGLLSPFLPPQAMIHHPQMMGMAPARVPLPLELAEDEPIYVNAKQYRAILRRRQ 205
           Y +PY+ GL+  +   Q +   P  +GM   R  LPL++A+ EP+YVNAKQY  ILRRR+
Sbjct: 133 YQDPYYGGLMGAYGH-QQLGFRP-YLGMPRERTALPLDMAQ-EPVYVNAKQYEGILRRRK 189

Query: 206 YRAKLEAQNKLVKGRKPYLHESRHAHAMNRARGSGGRFLNTKKV 249
            RAK E + K+++ RKPYLHESRH HAM RAR SGGRF    +V
Sbjct: 190 ARAKAELERKVIRDRKPYLHESRHKHAMRRARASGGRFAKKSEV 233

Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.

Arabidopsis thaliana (taxid: 3702)

>sp|P23708|NFYA_MOUSE Nuclear transcription factor Y subunit alpha OS=Mus musculus GN=Nfya PE=1 SV=2

 Score =  103 bits (257), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 50/80 (62%), Positives = 60/80 (75%), Gaps = 3/80 (3%)

Query: 172 GMAPA--RVPLP-LELAEDEPIYVNAKQYRAILRRRQYRAKLEAQNKLVKGRKPYLHESR 228
           G  PA  R+PLP  E+ E+EP+YVNAKQY  IL+RRQ RAKLEA+ K+ K R+ YLHESR
Sbjct: 243 GSVPAIQRIPLPGAEMLEEEPLYVNAKQYHRILKRRQARAKLEAEGKIPKERRKYLHESR 302

Query: 229 HAHAMNRARGSGGRFLNTKK 248
           H HAM R RG GGRF + K+
Sbjct: 303 HRHAMARKRGEGGRFFSPKE 322

Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters, for example in type 1 collagen, albumin and beta-actin genes.

Mus musculus (taxid: 10090)

>sp|P23511|NFYA_HUMAN Nuclear transcription factor Y subunit alpha OS=Homo sapiens GN=NFYA PE=1 SV=2

 Score =  103 bits (257), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 50/80 (62%), Positives = 60/80 (75%), Gaps = 3/80 (3%)

Query: 172 GMAPA--RVPLP-LELAEDEPIYVNAKQYRAILRRRQYRAKLEAQNKLVKGRKPYLHESR 228
           G  PA  R+PLP  E+ E+EP+YVNAKQY  IL+RRQ RAKLEA+ K+ K R+ YLHESR
Sbjct: 244 GSVPAIQRIPLPGAEMLEEEPLYVNAKQYHRILKRRQARAKLEAEGKIPKERRKYLHESR 303

Query: 229 HAHAMNRARGSGGRFLNTKK 248
           H HAM R RG GGRF + K+
Sbjct: 304 HRHAMARKRGEGGRFFSPKE 323

Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters, for example in type 1 collagen, albumin and beta-actin genes.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	335
255560677	335	Nuclear transcription factor Y subunit A	0.931	0.931	0.570	1e-85
351727963	348	CCAAT-binding transcription factor famil	0.919	0.885	0.517	2e-66
225442180	336	PREDICTED: nuclear transcription factor	0.889	0.886	0.460	9e-65
297842025	335	hypothetical protein ARALYDRAFT_339498 [	0.928	0.928	0.470	1e-61
147772926	311	hypothetical protein VITISV_021401 [Viti	0.814	0.877	0.435	3e-59
18410195	340	nuclear transcription factor Y subunit A	0.937	0.923	0.460	5e-59
2398525	340	Transcription factor [Arabidopsis thalia	0.937	0.923	0.460	7e-59
42572087	341	nuclear transcription factor Y subunit A	0.937	0.920	0.459	1e-57
388523195	300	nuclear transcription factor Y subunit A	0.794	0.886	0.5	8e-57
297850154	326	CCAAT-binding transcription factor (CBF-	0.904	0.929	0.457	1e-55

>gi|255560677|ref|XP_002521352.1| Nuclear transcription factor Y subunit A-3, putative [Ricinus communis] gi|223539430|gb|EEF41020.1| Nuclear transcription factor Y subunit A-3, putative [Ricinus communis]

 Score =  322 bits (825), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 194/340 (57%), Positives = 227/340 (66%), Gaps = 28/340 (8%)

Query: 1   MPNLFSKDSGISSACSASMNGVSGPLWGSSSESVVQQSSMSGCLSLKMAVPRQQFANTKQ 60
           M NL  K+SG+ S  S S   V   L G+S+ES V QSS+S  L L M VP QQF  +K+
Sbjct: 5   MHNLCKKESGMCSLLSTSPYIVGRQLLGNSTESTVHQSSLSESLGLTMGVPHQQFHGSKK 64

Query: 61  LSFQFQDQESSSTQSTGQSCSKEACVKDDNPSRQSVVSAPPGFNGIHVKPVGGHSKLASS 120
           L+FQFQDQ+SSSTQSTGQS  +             V S   GFN  H K  GGH KL S 
Sbjct: 65  LTFQFQDQDSSSTQSTGQSYPE-------------VASMGEGFNESHEKAEGGHVKLVSL 111

Query: 121 MGPHDFVFTPPHVDYNQSVAPFQLHYAEPYFSGLLSPFLPPQAMIHHPQMMGMAPARVPL 180
           MG  DF+F P   D +QSVA   LH+ EPYF GLL+ +  PQ+MIHHPQM GM  ARVPL
Sbjct: 112 MGTQDFIF-PSQFDCSQSVARVPLHFTEPYFGGLLAAY-GPQSMIHHPQMFGMTSARVPL 169

Query: 181 PLELAEDEPIYVNAKQYRAILRRRQYRAKLEAQNKLVKGRKPYLHESRHAHAMNRARGSG 240
           P    EDEPI+VNAKQY AILRRR+YRAKLEAQNKL+K RKPYLHESRH HA+ RARGSG
Sbjct: 170 PPVFTEDEPIFVNAKQYAAILRRRRYRAKLEAQNKLIKARKPYLHESRHLHALRRARGSG 229

Query: 241 GRFLNTKKVPESKRNLTNNELD-----------MSESEAHR-ENYKDGGSTTSCSDITSA 288
           GRFLN KK+ +S     ++ LD           +SESE H  EN++DG STTSCSD+TSA
Sbjct: 230 GRFLNAKKLEDSNPTPASHGLDGAGTQFHLAGNISESEVHHPENHRDGASTTSCSDVTSA 289

Query: 289 SNSEDIF-QQPEFGFSGYSSIGSRSMQGCSATMNGDGNIH 327
           SNS+DIF QQ EF FSGY S    +M+G S  M+G G+ H
Sbjct: 290 SNSDDIFQQQTEFKFSGYPSHFVGTMRGRSVGMHGGGSQH 329

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351727963|ref|NP_001235387.1| CCAAT-binding transcription factor family protein [Glycine max] gi|257136301|gb|ACV44452.1| CCAAT-binding transcription factor family protein [Glycine max]

 Score =  259 bits (661), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 178/344 (51%), Positives = 216/344 (62%), Gaps = 36/344 (10%)

Query: 1   MPNLFSKDSGISSACSASMNGVSGPLWGSSSESVVQQSSMSGCLSLKMAVPRQQFANTKQ 60
           M NL    SG +   S ++   S   WG+SSES VQQSSMS  LSLKM+V  QQ   TK 
Sbjct: 1   MKNLCENGSGPTHLTSYALGCSS---WGTSSESDVQQSSMSKSLSLKMSVLPQQCHKTKP 57

Query: 61  LSFQFQDQESSSTQS-------TGQSCSKEACVKDDNPSRQSVVSAPPGFNGIHVKPVGG 113
           LSFQ+QD++SSSTQS        G + S +  V+  N S  S  +   G      K V G
Sbjct: 58  LSFQYQDRDSSSTQSTGQSYPEVGSAQSGQISVQCSNSSASSTHNTTGG------KSVEG 111

Query: 114 HSKLASSMGPHDFVFTPPHVDYNQSVAPFQLHYAEPYFSGLLSPFLPPQAMIHHPQMMGM 173
              + S++G  D  F P  + YNQS+A    H+AEP FSGLL+    PQ+ IHH Q++GM
Sbjct: 112 --VIGSTVGIQDCTFPPSQLCYNQSLAHTAFHFAEPCFSGLLAAPFVPQSNIHHAQLLGM 169

Query: 174 APARVPLPLELAEDEPIYVNAKQYRAILRRRQYRAKLEAQNKLVKGRKPYLHESRHAHAM 233
            PAR+PLPL+L+E EP+YVNAKQY AILRRRQYRAKLEAQNKL+K RKPYLHESRH HA+
Sbjct: 170 TPARIPLPLDLSE-EPMYVNAKQYHAILRRRQYRAKLEAQNKLIKERKPYLHESRHLHAL 228

Query: 234 NRARGSGGRFLNTKKVPESKRNLTNNELD------------MSESEAH---RENYKDGGS 278
            RARGSGGRFLN KK+ E K    N  LD            MSES+       NY++G S
Sbjct: 229 KRARGSGGRFLNAKKLQELKLTSANRGLDVSGCTQLNLSGNMSESKVQAVENLNYRNGAS 288

Query: 279 TTSCSDITSASNSEDIFQQPE--FGFSGYSSIGSRSMQGCSATM 320
           TT+CSD+ S SNS+D+FQQ E  F   GY S   R+MQG SA +
Sbjct: 289 TTTCSDVISTSNSDDVFQQHESDFRLCGYPSHIGRNMQGYSADI 332

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225442180|ref|XP_002274458.1| PREDICTED: nuclear transcription factor Y subunit A-3 [Vitis vinifera] gi|297743031|emb|CBI35898.3| unnamed protein product [Vitis vinifera]

 Score =  253 bits (646), Expect = 9e-65,   Method: Compositional matrix adjust.
 Identities = 147/319 (46%), Positives = 192/319 (60%), Gaps = 21/319 (6%)

Query: 1   MPNLFSKDSGISSACSASMNGVSGPLWGSSSESVVQQSSMSGCLSLKMAVPRQQFANTKQ 60
           M +L   D  ++SA   S    S P W +SSE+  QQSS+     LK+      + +TK+
Sbjct: 1   MQHLCKNDFHVNSARPTSPCDASSPHWWTSSETNTQQSSLPKFSRLKIGTQTIDYHSTKE 60

Query: 61  LSFQFQDQESSSTQSTGQSCSKEACVKDDNPSRQSVVSAPPGFNGIHVKPVGGHSKLASS 120
           L  Q +DQ+S ST+STGQS         +N   QS+ SA  G+   H KP+        S
Sbjct: 61  LGSQVRDQDSPSTRSTGQSYPGVLHWGGNNTHGQSIFSAHLGYKETHGKPM-------VS 113

Query: 121 MGPHDFVFTPPHVDYNQSVAPFQLHYAEPYFSGLLSPFLPPQAMIHHPQMMGMAPARVPL 180
           +G  D++FTP  VD NQ  A   +   E Y   LL+P    +AMIHHPQMMGMAP+RVPL
Sbjct: 114 IGNQDYLFTPSQVDCNQLTARIPITATEIYHCDLLAPAYGTKAMIHHPQMMGMAPSRVPL 173

Query: 181 PLELAEDEPIYVNAKQYRAILRRRQYRAKLEAQNKLVKGRKPYLHESRHAHAMNRARGSG 240
           P+   ++E I++N KQY  I+RRR++RAKLEAQ   VK RKPYLHESRH HA+ R RG+G
Sbjct: 174 PVLNPQEEVIFINPKQYNGIMRRRKHRAKLEAQTNPVKARKPYLHESRHLHALKRPRGAG 233

Query: 241 GRFLNTKKVPESKRNLTNNELDM-------------SESEAHR-ENYKDGGSTTSCSDIT 286
           GRFLN  K+ E K +  + +  +             SESE H+ EN ++G STTSCSD+T
Sbjct: 234 GRFLNMSKLQEPKPSSPSTDALIAGSAQPPFNGNTASESEVHQPENNREGASTTSCSDVT 293

Query: 287 SASNSEDIFQQPEFGFSGY 305
           S SNS+D+F QPEF FS Y
Sbjct: 294 SGSNSDDVFLQPEFRFSTY 312

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297842025|ref|XP_002888894.1| hypothetical protein ARALYDRAFT_339498 [Arabidopsis lyrata subsp. lyrata] gi|297334735|gb|EFH65153.1| hypothetical protein ARALYDRAFT_339498 [Arabidopsis lyrata subsp. lyrata]

 Score =  243 bits (619), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 160/340 (47%), Positives = 203/340 (59%), Gaps = 29/340 (8%)

Query: 7   KDSGISSACSASMNGVSGPLWGSS-SESVVQQ--SSMSGCLSLKMAVPRQQFANTKQLSF 63
           KDS   S        +S   WG   ++S+V +  ++    LSLKM    +    TKQ+SF
Sbjct: 4   KDSATHSTLPYLNTSIS---WGVVPTDSIVNRRVTTTESSLSLKMDARPELLQTTKQISF 60

Query: 64  QFQDQESSSTQSTGQSCSKEACVKDDNPSRQSVVSAPPGFNGIHVKPVGGHSKLASSMGP 123
           Q  DQ+SSSTQSTGQS ++ A  +DDNPSRQ   SA  G      K    + K     G 
Sbjct: 61  Q--DQDSSSTQSTGQSYTEVATSEDDNPSRQISFSAKSGSEATQRKGFASNPKPGLMTGF 118

Query: 124 HDFVFTPPHVDYNQSVAPFQLHYAEPYFSGLLSPFLPPQAMIHHPQMMGMAPARVPLPLE 183
            +  F P       + A F  HYA+P++ GLL+    PQA   +PQM+ M P RVPLP E
Sbjct: 119 PNIHFAP-------AQANFSFHYADPHYGGLLAATYLPQAPTCNPQMVSMIPGRVPLPAE 171

Query: 184 LAEDEPIYVNAKQYRAILRRRQYRAKLEAQNKLVKGRKPYLHESRHAHAMNRARGSGGRF 243
           L E EP++VNAKQY AI+RRRQ RAKLEAQNKL++ RKPYLHESRH HA+ R RGSGGRF
Sbjct: 172 LTETEPVFVNAKQYHAIMRRRQQRAKLEAQNKLIRARKPYLHESRHVHALKRPRGSGGRF 231

Query: 244 LNTKKV----PESKRNLTNNELD--------MSESEAHRENYKDGGSTTSCSDITSASNS 291
           LNTKK+     ++ R   N++ D        MS  EAH  + KD GSTTS SDITS S+ 
Sbjct: 232 LNTKKLLQEAEQAAREQENDKSDQQENRKTNMSRFEAHMLHSKDLGSTTSGSDITSISDG 291

Query: 292 EDIFQQPEFGFSGYSSIGSRSM--QGCSATMNGDGNIHRF 329
            D+F   EF FSG+S+  +R+M   G S  M+G G++H F
Sbjct: 292 ADLFGHTEFQFSGFSTQTNRAMLVHGQSNDMHGGGDMHHF 331

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147772926|emb|CAN73678.1| hypothetical protein VITISV_021401 [Vitis vinifera]

 Score =  235 bits (599), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 139/319 (43%), Positives = 181/319 (56%), Gaps = 46/319 (14%)

Query: 1   MPNLFSKDSGISSACSASMNGVSGPLWGSSSESVVQQSSMSGCLSLKMAVPRQQFANTKQ 60
           M +L   D  ++SA   S    S P W +SSE+  QQSS+     LK+      + +TK+
Sbjct: 1   MQHLCKNDFHVNSARPTSPCDASSPHWWTSSETNTQQSSLPKFSRLKIGTQTIDYHSTKE 60

Query: 61  LSFQFQDQESSSTQSTGQSCSKEACVKDDNPSRQSVVSAPPGFNGIHVKPVGGHSKLASS 120
           L  Q +DQ+S ST+STG                         +   H KP+        S
Sbjct: 61  LGSQVRDQDSPSTRSTG-------------------------YKETHGKPM-------VS 88

Query: 121 MGPHDFVFTPPHVDYNQSVAPFQLHYAEPYFSGLLSPFLPPQAMIHHPQMMGMAPARVPL 180
           +G  D++FTP  VD NQ  A   +   E Y   LL+P    +AMIHHPQMMGMAP+RVPL
Sbjct: 89  IGNQDYLFTPSQVDCNQLTARIPITATEIYHCDLLAPAYGTKAMIHHPQMMGMAPSRVPL 148

Query: 181 PLELAEDEPIYVNAKQYRAILRRRQYRAKLEAQNKLVKGRKPYLHESRHAHAMNRARGSG 240
           P+   ++E I++N KQY  I+RRR++RAKLEAQ   VK RKPYLHESRH HA+ R RG+G
Sbjct: 149 PVLNPQEEVIFINPKQYNGIMRRRKHRAKLEAQTNPVKARKPYLHESRHLHALKRPRGAG 208

Query: 241 GRFLNTKKVPESKRNLTNNEL-------------DMSESEAHR-ENYKDGGSTTSCSDIT 286
           GRFLN  K+ E K +  + +                SESE H+ EN ++G STTSCSD+T
Sbjct: 209 GRFLNMSKLQEPKPSSPSTDALIAGSAQPPFNGNTTSESEVHQPENNREGASTTSCSDVT 268

Query: 287 SASNSEDIFQQPEFGFSGY 305
           S SNS+D+F QPEF FS Y
Sbjct: 269 SGSNSDDVFLQPEFRFSTY 287

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18410195|ref|NP_565049.1| nuclear transcription factor Y subunit A-3 [Arabidopsis thaliana] gi|81174954|sp|Q93ZH2.2|NFYA3_ARATH RecName: Full=Nuclear transcription factor Y subunit A-3; Short=AtNF-YA-3; AltName: Full=Transcriptional activator HAP2C gi|5903072|gb|AAD55630.1|AC008017_3 Transcription Factor [Arabidopsis thaliana] gi|22655158|gb|AAM98169.1| CCAAT-binding factor B subunit-like protein, putative [Arabidopsis thaliana] gi|31711816|gb|AAP68264.1| At1g72830 [Arabidopsis thaliana] gi|332197257|gb|AEE35378.1| nuclear transcription factor Y subunit A-3 [Arabidopsis thaliana]

 Score =  234 bits (596), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 158/343 (46%), Positives = 197/343 (57%), Gaps = 29/343 (8%)

Query: 4   LFSKDSGISSACSASMNGVSGPLWGSS-SESVVQQSSMSGCLSLKMAVPRQQFANTKQLS 62
           L  KDS   S        +S   WG   ++SV  +   +  LSLK+         TKQ+S
Sbjct: 6   LNKKDSATHSTLPYLNTSIS---WGVVPTDSVANRRGSAESLSLKVDSRPGHIQTTKQIS 62

Query: 63  FQFQDQESSSTQSTGQSCSKEACVKDDNPSRQSVVSAPPGFNGIHVKPVGGHSKLASSMG 122
           FQ  DQ+SSSTQSTGQS ++ A   DDNPSRQ   SA  G      K    + K  S  G
Sbjct: 63  FQ--DQDSSSTQSTGQSYTEVASSGDDNPSRQISFSAKSGSEITQRKGFASNPKQGSMTG 120

Query: 123 PHDFVFTPPHVDYNQSVAPFQLHYAEPYFSGLLSPFLPPQAMIHHPQMMGMAPARVPLPL 182
             +  F P       + A F  HYA+P++ GLL+    PQA   +PQM+ M P RVPLP 
Sbjct: 121 FPNIHFAP-------AQANFSFHYADPHYGGLLAATYLPQAPTCNPQMVSMIPGRVPLPA 173

Query: 183 ELAEDEPIYVNAKQYRAILRRRQYRAKLEAQNKLVKGRKPYLHESRHAHAMNRARGSGGR 242
           EL E +P++VNAKQY AI+RRRQ RAKLEAQNKL++ RKPYLHESRH HA+ R RGSGGR
Sbjct: 174 ELTETDPVFVNAKQYHAIMRRRQQRAKLEAQNKLIRARKPYLHESRHVHALKRPRGSGGR 233

Query: 243 FLNTKKVPESKRNL-------------TNNELDMSESEAHR-ENYKDGGSTTSCSDITSA 288
           FLNTKK+ +                   N + +MS  EAH  +N KD  STTS SDITS 
Sbjct: 234 FLNTKKLLQESEQAAAREQEQDKLGQQVNRKTNMSRFEAHMLQNNKDRSSTTSGSDITSV 293

Query: 289 SNSEDIFQQPEFGFSGYSSIGSRSM--QGCSATMNGDGNIHRF 329
           S+  DIF   EF FSG+ +  +R+M   G S  M+G G++H F
Sbjct: 294 SDGADIFGHTEFQFSGFPTPINRAMLVHGQSNDMHGGGDMHHF 336

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|2398525|emb|CAA74050.1| Transcription factor [Arabidopsis thaliana]

 Score =  233 bits (595), Expect = 7e-59,   Method: Compositional matrix adjust.
 Identities = 158/343 (46%), Positives = 197/343 (57%), Gaps = 29/343 (8%)

Query: 4   LFSKDSGISSACSASMNGVSGPLWGSS-SESVVQQSSMSGCLSLKMAVPRQQFANTKQLS 62
           L  KDS   S        +S   WG   ++SV  +   +  LSLK+         TKQ+S
Sbjct: 6   LNKKDSATHSTLPYLNTSIS---WGVVPTDSVANRRGPAESLSLKVDSRPGHIQTTKQIS 62

Query: 63  FQFQDQESSSTQSTGQSCSKEACVKDDNPSRQSVVSAPPGFNGIHVKPVGGHSKLASSMG 122
           FQ  DQ+SSSTQSTGQS ++ A   DDNPSRQ   SA  G      K    + K  S  G
Sbjct: 63  FQ--DQDSSSTQSTGQSYTEVASSGDDNPSRQISFSAKSGSEITQRKGFASNPKQGSMTG 120

Query: 123 PHDFVFTPPHVDYNQSVAPFQLHYAEPYFSGLLSPFLPPQAMIHHPQMMGMAPARVPLPL 182
             +  F P       + A F  HYA+P++ GLL+    PQA   +PQM+ M P RVPLP 
Sbjct: 121 FPNIHFAP-------AQANFSFHYADPHYGGLLAATYLPQAPTCNPQMVSMIPGRVPLPA 173

Query: 183 ELAEDEPIYVNAKQYRAILRRRQYRAKLEAQNKLVKGRKPYLHESRHAHAMNRARGSGGR 242
           EL E +P++VNAKQY AI+RRRQ RAKLEAQNKL++ RKPYLHESRH HA+ R RGSGGR
Sbjct: 174 ELTETDPVFVNAKQYHAIMRRRQQRAKLEAQNKLIRARKPYLHESRHVHALKRPRGSGGR 233

Query: 243 FLNTKKVPESKRNL-------------TNNELDMSESEAHR-ENYKDGGSTTSCSDITSA 288
           FLNTKK+ +                   N + +MS  EAH  +N KD  STTS SDITS 
Sbjct: 234 FLNTKKLLQESEQAAAREQEQDKLGQQVNRKTNMSRFEAHMLQNNKDRSSTTSGSDITSV 293

Query: 289 SNSEDIFQQPEFGFSGYSSIGSRSM--QGCSATMNGDGNIHRF 329
           S+  DIF   EF FSG+ +  +R+M   G S  M+G G++H F
Sbjct: 294 SDGADIFGHTEFQFSGFPTPINRAMLVHGQSNDMHGGGDMHHF 336

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|42572087|ref|NP_974134.1| nuclear transcription factor Y subunit A-3 [Arabidopsis thaliana] gi|332197256|gb|AEE35377.1| nuclear transcription factor Y subunit A-3 [Arabidopsis thaliana]

 Score =  229 bits (584), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 158/344 (45%), Positives = 197/344 (57%), Gaps = 30/344 (8%)

Query: 4   LFSKDSGISSACSASMNGVSGPLWGSS-SESVVQQSSMSGCLSLKMAVPRQQFANTKQLS 62
           L  KDS   S        +S   WG   ++SV  +   +  LSLK+         TKQ+S
Sbjct: 6   LNKKDSATHSTLPYLNTSIS---WGVVPTDSVANRRGSAESLSLKVDSRPGHIQTTKQIS 62

Query: 63  FQFQDQESSSTQSTGQSCSKEACVKDDNPSRQSVVSAPPGFNGIHVKPVGGHSKLASSMG 122
           FQ  DQ+SSSTQSTGQS ++ A   DDNPSRQ   SA  G      K    + K  S  G
Sbjct: 63  FQ--DQDSSSTQSTGQSYTEVASSGDDNPSRQISFSAKSGSEITQRKGFASNPKQGSMTG 120

Query: 123 PHDFVFTPPHVDYNQSVAPFQLHYAEPYFSGLLSPFLPPQAMIHHPQMMGMAPARVPLPL 182
             +  F P       + A F  HYA+P++ GLL+    PQA   +PQM+ M P RVPLP 
Sbjct: 121 FPNIHFAP-------AQANFSFHYADPHYGGLLAATYLPQAPTCNPQMVSMIPGRVPLPA 173

Query: 183 ELAEDEPIYVNAKQYRAILRRRQYRAKLEAQNKLVKGRK-PYLHESRHAHAMNRARGSGG 241
           EL E +P++VNAKQY AI+RRRQ RAKLEAQNKL++ RK PYLHESRH HA+ R RGSGG
Sbjct: 174 ELTETDPVFVNAKQYHAIMRRRQQRAKLEAQNKLIRARKVPYLHESRHVHALKRPRGSGG 233

Query: 242 RFLNTKKVPESKRNL-------------TNNELDMSESEAHR-ENYKDGGSTTSCSDITS 287
           RFLNTKK+ +                   N + +MS  EAH  +N KD  STTS SDITS
Sbjct: 234 RFLNTKKLLQESEQAAAREQEQDKLGQQVNRKTNMSRFEAHMLQNNKDRSSTTSGSDITS 293

Query: 288 ASNSEDIFQQPEFGFSGYSSIGSRSM--QGCSATMNGDGNIHRF 329
            S+  DIF   EF FSG+ +  +R+M   G S  M+G G++H F
Sbjct: 294 VSDGADIFGHTEFQFSGFPTPINRAMLVHGQSNDMHGGGDMHHF 337

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388523195|gb|AFK49650.1| nuclear transcription factor Y subunit A8 [Medicago truncatula]

 Score =  226 bits (577), Expect = 8e-57,   Method: Compositional matrix adjust.
 Identities = 147/294 (50%), Positives = 181/294 (61%), Gaps = 28/294 (9%)

Query: 40  MSGCLSLKMAVPRQQFANTKQLSFQFQDQESSSTQS-------TGQSCSKEACVKDDNPS 92
           MS  L+L M+V +Q+   +K L FQFQDQ+SSSTQS        G   S    V+ +N S
Sbjct: 1   MSENLTLNMSVLQQECHKSKPLVFQFQDQDSSSTQSTGQSYLEVGSGQSGPISVQYNNSS 60

Query: 93  RQSVVSAPPGFNGIHVKPVGGHSKLASSMGPHDFVFTPPHVDYNQSVAPFQLHYAEPYFS 152
             S +S   G      K   G   + SS G  DF      +D+NQS+AP    + E Y +
Sbjct: 61  TCSTLSETGG------KSTEG--IILSSAGSRDFTLPSSQLDHNQSLAPVAFPHVETYSN 112

Query: 153 GLLSPFLPPQAMIHHPQMMGMAPARVPLPLELAEDEPIYVNAKQYRAILRRRQYRAKLEA 212
           GLL+     +  ++H Q+ GM P R+PLPL L E EPIYVNAKQY AILRRRQYRAKLEA
Sbjct: 113 GLLAAPYGSRNNVNHAQLAGMPPVRIPLPLNLCE-EPIYVNAKQYHAILRRRQYRAKLEA 171

Query: 213 QNKLVKGRKPYLHESRHAHAMNRARGSGGRFLNTKKVPESKRNLT-----NNELDMSESE 267
           QNKLVK RKPYLHESRH HA+ RARGSGGRFLNT K+ +   N++     N   ++ ES 
Sbjct: 172 QNKLVKNRKPYLHESRHLHALKRARGSGGRFLNTNKLQDHGFNVSTTTRVNPSGNVPESR 231

Query: 268 AHR-ENYKDGGSTTSCSDITSASNSEDIFQQPEFGF--SGYSSIGSRSMQGCSA 318
            H+ E Y+DG STT+CSD+T ASNS+D+FQQ E  F   GY S     MQ  SA
Sbjct: 232 VHQVEKYRDGASTTTCSDVTCASNSDDMFQQHESDFRSCGYPS----HMQDLSA 281

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297850154|ref|XP_002892958.1| CCAAT-binding transcription factor (CBF-B/NF-YA) family protein [Arabidopsis lyrata subsp. lyrata] gi|297338800|gb|EFH69217.1| CCAAT-binding transcription factor (CBF-B/NF-YA) family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  223 bits (568), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 155/339 (45%), Positives = 195/339 (57%), Gaps = 36/339 (10%)

Query: 7   KDSGISSACSASMNGVSGPLWGSSSESVVQQSSMSGCLSLKMAVPRQQFANTKQLSFQFQ 66
           KDS   S  S     +S   WG S+ES V  S+M     LK+    ++  NT   +F FQ
Sbjct: 4   KDSAAHSTPSFLNTSIS---WGLSTESNVGGSAMR----LKVDARPERLLNTN--NFSFQ 54

Query: 67  DQESSSTQSTGQSCSKEACVKDDNPSRQSVVSAP----PGFNGIHVKPVGGHSKLASSM- 121
           DQ+SSST ST QS +  A   DD+PSR    SA      GF     K    H K  SS  
Sbjct: 55  DQDSSSTLSTAQSSTHVATSGDDDPSRHISFSAHSDIFKGFEETQRKQFANHIKSGSSTA 114

Query: 122 GPHDFVFTPPHVDYNQSVAPFQLHYAEPYFSGLLSPFLPPQAMIHHPQMMGMAPARVPLP 181
           G  D  F+P       S A F  HYA+P+F G++      QA I +PQM+    +RVPLP
Sbjct: 115 GIADIHFSP-------SKANFSFHYADPHFGGVMPAAYLQQATIWNPQMV----SRVPLP 163

Query: 182 LELAEDEPIYVNAKQYRAILRRRQYRAKLEAQNKLVKGRKPYLHESRHAHAMNRARGSGG 241
             L E+EP++VNAKQ+ AI+RRRQ RAKLEAQNKL++ RKPYLHESRH HA+ R RGSGG
Sbjct: 164 FHLIENEPVFVNAKQFHAIMRRRQQRAKLEAQNKLIRARKPYLHESRHVHALKRPRGSGG 223

Query: 242 RFLNTKKVPES---KRNLTNNEL----DMSESEAHR-ENYKDGG-STTSCSDITSASNSE 292
           RFLNTKK+ ES   K+++   +     +MS   AH+ +  KD G STTS SDITSAS+  
Sbjct: 224 RFLNTKKLQESTDPKQDMPIQQQQAKGNMSRFVAHQLQTSKDRGCSTTSGSDITSASDGV 283

Query: 293 DIFQQPEFGFSGYSSIGSRSM--QGCSATMNGDGNIHRF 329
           D+F   EF  S + S  + +M     S  M+G GN H F
Sbjct: 284 DLFGHTEFQISDHPSQTNPTMYVHRQSNDMHGGGNTHHF 322

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	335
TAIR|locus:2032758	341	NF-YA3 ""nuclear factor Y, sub	0.653	0.642	0.497	2.5e-49
TAIR|locus:2007953	328	NF-YA8 ""nuclear factor Y, sub	0.808	0.826	0.427	3.5e-43
TAIR|locus:2014375	308	NF-YA5 ""nuclear factor Y, sub	0.576	0.626	0.487	3.2e-42
TAIR|locus:2088232	308	NF-YA6 ""nuclear factor Y, sub	0.597	0.649	0.486	1.1e-41
TAIR|locus:2028150	190	NF-YA7 ""nuclear factor Y, sub	0.385	0.678	0.511	3e-30
TAIR|locus:2088791	303	NF-YA9 ""nuclear factor Y, sub	0.608	0.673	0.369	9.4e-27
TAIR|locus:2061534	198	NF-YA4 ""nuclear factor Y, sub	0.385	0.651	0.457	1.8e-25
TAIR|locus:2182245	272	NF-YA1 ""nuclear factor Y, sub	0.4	0.492	0.445	2e-24
ZFIN|ZDB-GENE-040718-491	399	nfyal "nuclear transcription f	0.265	0.223	0.589	1.6e-22
TAIR|locus:2144113	269	NF-YA10 ""nuclear factor Y, su	0.474	0.591	0.396	7e-22

TAIR|locus:2032758 NF-YA3 ""nuclear factor Y, subunit A3"" [Arabidopsis thaliana (taxid:3702)]

 Score = 514 (186.0 bits), Expect = 2.5e-49, P = 2.5e-49
 Identities = 120/241 (49%), Positives = 149/241 (61%)

Query:    88 DDNPSRQSVVSAPPGFNGIHVKPVGGHSKLASSMGPHDFVFTPPHVDYNQSVAPFQLHYA 147
             DDNPSRQ   SA  G      K    + K  S  G     F  P++ +  + A F  HYA
Sbjct:    86 DDNPSRQISFSAKSGSEITQRKGFASNPKQGSMTG-----F--PNIHFAPAQANFSFHYA 138

Query:   148 EPYFSGLLSPFLPPQAMIHHPQMMGMAPARVPLPLELAEDEPIYVNAKQYRAILRRRQYR 207
             +P++ GLL+    PQA   +PQM+ M P RVPLP EL E +P++VNAKQY AI+RRRQ R
Sbjct:   139 DPHYGGLLAATYLPQAPTCNPQMVSMIPGRVPLPAELTETDPVFVNAKQYHAIMRRRQQR 198

Query:   208 AKLEAQNKLVKGRK-PYLHESRHAHAMNRARGSGGRFLNTKKV-PESKR----------- 254
             AKLEAQNKL++ RK PYLHESRH HA+ R RGSGGRFLNTKK+  ES++           
Sbjct:   199 AKLEAQNKLIRARKVPYLHESRHVHALKRPRGSGGRFLNTKKLLQESEQAAAREQEQDKL 258

Query:   255 -NLTNNELDMSESEAHR-ENYKDGGSTTSCSDITSASNSEDIFQQPEFGFSGYSSIGSRS 312
                 N + +MS  EAH  +N KD  STTS SDITS S+  DIF   EF FSG+ +  +R+
Sbjct:   259 GQQVNRKTNMSRFEAHMLQNNKDRSSTTSGSDITSVSDGADIFGHTEFQFSGFPTPINRA 318

Query:   313 M 313
             M
Sbjct:   319 M 319

GO:0003677 "DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;IGI;ISS

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0016602 "CCAAT-binding factor complex" evidence=IEA;ISS

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=RCA

TAIR|locus:2007953 NF-YA8 ""nuclear factor Y, subunit A8"" [Arabidopsis thaliana (taxid:3702)]

 Score = 456 (165.6 bits), Expect = 3.5e-43, P = 3.5e-43
 Identities = 129/302 (42%), Positives = 163/302 (53%)

Query:    44 LSLKMAVPR-QQFANTKXXXXXXXXXXXXXXXXXXXXXXKEACVKDDNPSRQSVVSAPP- 101
             LSLK+   R ++  NTK                        +   DDNPSRQ    A   
Sbjct:    38 LSLKVVDARPERLINTKNISFQDQDSSSTLSSAQSSNDVTSS--GDDNPSRQISFLAHSD 95

Query:   102 ---GFNGIHVKPVGGHSKLASSMGPHDFVFTPPHVDYNQSVAPFQLHYAEPYFSGLLSPF 158
                GF     K     S  +S+ G  D   +P       S A F  HYA+P+F GL+   
Sbjct:    96 VCKGFEETQRKRFAIKSG-SSTAGIADIHSSP-------SKANFSFHYADPHFGGLMPAA 147

Query:   159 LPPQAMIHHPQMMGMAPARVPLPLELAEDEPIYVNAKQYRAILRRRQYRAKLEAQNKLVK 218
               PQA I +PQM      RVPLP +L E+EP++VNAKQ+ AI+RRRQ RAKLEAQNKL+K
Sbjct:   148 YLPQATIWNPQM-----TRVPLPFDLIENEPVFVNAKQFHAIMRRRQQRAKLEAQNKLIK 202

Query:   219 GRKPYLHESRHAHAMNRARGSGGRFLNTKKVPES---KRNLTNNEL----DMSESEAHR- 270
              RKPYLHESRH HA+ R RGSGGRFLNTKK+ ES   K+++   +     +MS    ++ 
Sbjct:   203 ARKPYLHESRHVHALKRPRGSGGRFLNTKKLQESTDPKQDMPIQQQHATGNMSRFVLYQL 262

Query:   271 ENYKDGG-STTSCSDITSASNSEDIFQQPEFGFSGYSSIGSRSM--QGCSATMNGDGNIH 327
             +N  D   STTS SDITSAS+S ++F   EF  S   S  + +M   G S  M+G  N H
Sbjct:   263 QNSNDCDCSTTSRSDITSASDSVNLFGHSEFLISDCPSQTNPTMYVHGQSNDMHGGRNTH 322

Query:   328 RF 329
              F
Sbjct:   323 HF 324

GO:0003677 "DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0016602 "CCAAT-binding factor complex" evidence=IEA;ISS

TAIR|locus:2014375 NF-YA5 ""nuclear factor Y, subunit A5"" [Arabidopsis thaliana (taxid:3702)]

 Score = 447 (162.4 bits), Expect = 3.2e-42, P = 3.2e-42
 Identities = 100/205 (48%), Positives = 132/205 (64%)

Query:   109 KPVGGHSK--LASSMGPHDFVFTPPHVDYNQSVAPFQLHYAEP-YFSGLLSP-FLPPQAM 164
             KP+  ++K    SSM   D VF  P          + L  AE  +F+G L+P +      
Sbjct:    99 KPIENYTKSITTSSMVSQDSVFPAP----TSGQISWSLQCAETSHFNGFLAPEYASTPTA 154

Query:   165 IHHPQMMGMAPARVPLPLELAEDEPIYVNAKQYRAILRRRQYRAKLEAQNKLVKGRKPYL 224
             + H +MMG+  +RVPLP  + E+EPI+VNAKQY AILRRR++RAKLEAQNKL+K RKPYL
Sbjct:   155 LPHLEMMGLVSSRVPLPHHIQENEPIFVNAKQYHAILRRRKHRAKLEAQNKLIKCRKPYL 214

Query:   225 HESRHAHAMNRARGSGGRFLNTKKVPESKRNLTNNELDMSESEAHRENYKDGGSTTSCSD 284
             HESRH HA+ RARGSGGRFLNTKK+ ES  +L +++  M+  +    +   GGS    S 
Sbjct:   215 HESRHLHALKRARGSGGRFLNTKKLQESSNSLCSSQ--MANGQNFSMSPHGGGSGIGSSS 272

Query:   285 ITSASNSE--DIFQQPEFGFSGYSS 307
             I+ +SNS   ++FQ P+F FSGY S
Sbjct:   273 ISPSSNSNCINMFQNPQFRFSGYPS 297

GO:0003677 "DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0016602 "CCAAT-binding factor complex" evidence=IEA;ISS

GO:0009738 "abscisic acid mediated signaling pathway" evidence=IMP

GO:0009785 "blue light signaling pathway" evidence=IMP

GO:0009414 "response to water deprivation" evidence=IMP

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=RCA;IDA

GO:0016036 "cellular response to phosphate starvation" evidence=RCA

GO:0019375 "galactolipid biosynthetic process" evidence=RCA

GO:0009790 "embryo development" evidence=IMP

GO:0010262 "somatic embryogenesis" evidence=IMP

GO:0048316 "seed development" evidence=IMP

TAIR|locus:2088232 NF-YA6 ""nuclear factor Y, subunit A6"" [Arabidopsis thaliana (taxid:3702)]

 Score = 442 (160.7 bits), Expect = 1.1e-41, P = 1.1e-41
 Identities = 110/226 (48%), Positives = 139/226 (61%)

Query:    96 VVSAPPGFNGIHVKPVGGHSKLASSMGPHDFVFTPPHVDYNQSVAPFQLH-YAEPYFSGL 154
             VV+   G+      P+G HS    S    D V  P  ++     A + LH    P+F+G 
Sbjct:    87 VVTHLSGYKENPENPIGSHS---ISKVSQDSVVLP--IE----AASWPLHGNVTPHFNGF 137

Query:   155 LS-PFLPPQAMIHHPQMMGMAPARVPLPLELAEDEPIYVNAKQYRAILRRRQYRAKLEAQ 213
             LS P+   Q  + HPQ+ G+ P+R+PLP  + E+EPI+VNAKQY+AILRRR+ RAKLEAQ
Sbjct:   138 LSFPYAS-QHTVQHPQIRGLVPSRMPLPHNIPENEPIFVNAKQYQAILRRRERRAKLEAQ 196

Query:   214 NKLVKGRKPYLHESRHAHAMNRARGSGGRFLNTKKVPESKRNLTNNEL------DMSESE 267
             NKL+K RKPYLHESRH HA+ R RGSGGRFLNTKK  ES  +L+   L        S  +
Sbjct:   197 NKLIKVRKPYLHESRHLHALKRVRGSGGRFLNTKKHQESNSSLSPPFLIPPHVFKNSPGK 256

Query:   268 AHRENYKDGG-----STTSCSDITSASNSEDIFQQ-PEFGFSGYSS 307
               + +   GG     STTSCSDIT   N+ D+FQQ P+F FSGY S
Sbjct:   257 FRQMDISRGGVVSSVSTTSCSDITG--NNNDMFQQNPQFRFSGYPS 300

GO:0003677 "DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0016602 "CCAAT-binding factor complex" evidence=IEA;ISS

GO:0009790 "embryo development" evidence=IMP

GO:0010262 "somatic embryogenesis" evidence=IMP

GO:0048316 "seed development" evidence=IMP

TAIR|locus:2028150 NF-YA7 ""nuclear factor Y, subunit A7"" [Arabidopsis thaliana (taxid:3702)]

 Score = 334 (122.6 bits), Expect = 3.0e-30, P = 3.0e-30
 Identities = 69/135 (51%), Positives = 89/135 (65%)

Query:   127 VFTPPHVDYNQSVAPFQLHYAEPYFSGLLSPFLPPQAMIH-HPQMMGMAPARVPLPLELA 185
             V++ P      S+AP Q  Y +PY+  + +P  PPQ     H Q+MG+    VPLP +  
Sbjct:    43 VYSDPGT--TNSMAPGQYPYPDPYYRSIFAP--PPQPYTGVHLQLMGVQQQGVPLPSDAV 98

Query:   186 EDEPIYVNAKQYRAILRRRQYRAKLEAQNKLVKGRKPYLHESRHAHAMNRARGSGGRFLN 245
             E EP++VNAKQY  ILRRRQ RA+LE+QNK++K RKPYLHESRH HA+ R RG GGRFLN
Sbjct:    99 E-EPVFVNAKQYHGILRRRQSRARLESQNKVIKSRKPYLHESRHLHAIRRPRGCGGRFLN 157

Query:   246 TKKVPESKRNLTNNE 260
              KK  E   + ++ E
Sbjct:   158 AKKEDEHHEDSSHEE 172

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0016602 "CCAAT-binding factor complex" evidence=ISS

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=RCA;IDA

GO:0016036 "cellular response to phosphate starvation" evidence=RCA

GO:0019375 "galactolipid biosynthetic process" evidence=RCA

TAIR|locus:2088791 NF-YA9 ""nuclear factor Y, subunit A9"" [Arabidopsis thaliana (taxid:3702)]

 Score = 301 (111.0 bits), Expect = 9.4e-27, P = 9.4e-27
 Identities = 88/238 (36%), Positives = 123/238 (51%)

Query:    87 KDDNPSRQSVVSAPPGFNGIHVKPVGGHSKLASSMGPHDFVFTPPHVDY-NQSVAPFQLH 145
             +D+  +++S V+  P       +  G +S        H     PPH      +V     +
Sbjct:    73 RDNTVNKESQVTTSP-------QSAGDYSDKNQESLHHGITQPPPHPQLVGHTVGWASSN 125

Query:   146 -YAEPYFSGLLSPFLPPQAMIHHPQMM----GMAPARVPLPLELAEDEPIYVNAKQYRAI 200
              Y +PY++G++       A  HHP       GM  +R+PLP E+A+ EP++VNAKQY+AI
Sbjct:   126 PYQDPYYAGVMG------AYGHHPLGFVPYGGMPHSRMPLPPEMAQ-EPVFVNAKQYQAI 178

Query:   201 LRRRQYRAKLEAQNKLVKGRKPYLHESRHAHAMNRARGSGGRFLNTKKVPESKRNLTNNE 260
             LRRRQ RAK E + KL+K RKPYLHESRH HAM R RG+GGRF   KK        TN E
Sbjct:   179 LRRRQARAKAELEKKLIKSRKPYLHESRHQHAMRRPRGTGGRF--AKK--------TNTE 228

Query:   261 LDMSESEAHRENYKDGGSTTSCSDITSASNSEDIFQQPEFGFSGYSSIGSRSMQG-CS 317
                 ++E     +     ++S SD   A N +  ++ P+ G    SS   R  +G CS
Sbjct:   229 ASKRKAEEKSNGHVTQSPSSSNSDQGEAWNGD--YRTPQ-GDEMQSSAYKRREEGECS 283

GO:0003677 "DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0016602 "CCAAT-binding factor complex" evidence=IEA;ISS

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IDA

GO:0009555 "pollen development" evidence=IMP

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

GO:0009790 "embryo development" evidence=IMP

GO:0010262 "somatic embryogenesis" evidence=IMP

GO:0048316 "seed development" evidence=IMP

GO:0055046 "microgametogenesis" evidence=IMP

TAIR|locus:2061534 NF-YA4 ""nuclear factor Y, subunit A4"" [Arabidopsis thaliana (taxid:3702)]

 Score = 289 (106.8 bits), Expect = 1.8e-25, P = 1.8e-25
 Identities = 64/140 (45%), Positives = 84/140 (60%)

Query:   135 YNQSVAPFQLHYAEPYFSGLLSPFLPPQAMIHHP------QMMGMAPARVPLPLELAEDE 188
             Y++ +A     Y +PY+  + +     QA + HP      Q+MGM    VPL  +  E E
Sbjct:    44 YSEPMAHGLYPYPDPYYRSVFAQ----QAYLPHPYPGVQLQLMGMQQPGVPLQCDAVE-E 98

Query:   189 PIYVNAKQYRAILRRRQYRAKLEAQNKLVKGRKPYLHESRHAHAMNRARGSGGRFLNTKK 248
             P++VNAKQY  ILRRRQ RAKLEA+N+ +K +KPY+HESRH HA+ R RG GGRFLN KK
Sbjct:    99 PVFVNAKQYHGILRRRQSRAKLEARNRAIKAKKPYMHESRHLHAIRRPRGCGGRFLNAKK 158

Query:   249 VPESKRNLTNNELDMSESEA 268
                  +       D + SEA
Sbjct:   159 ENGDHKEEEEATSDENTSEA 178

GO:0003677 "DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0016602 "CCAAT-binding factor complex" evidence=IEA;ISS

GO:0048510 "regulation of timing of transition from vegetative to reproductive phase" evidence=IMP

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IDA

GO:0009411 "response to UV" evidence=RCA

GO:0009651 "response to salt stress" evidence=RCA

GO:0009723 "response to ethylene stimulus" evidence=RCA

GO:0009733 "response to auxin stimulus" evidence=RCA

GO:0009737 "response to abscisic acid stimulus" evidence=RCA

GO:0009739 "response to gibberellin stimulus" evidence=RCA

GO:0009751 "response to salicylic acid stimulus" evidence=RCA

GO:0009753 "response to jasmonic acid stimulus" evidence=RCA

GO:0009813 "flavonoid biosynthetic process" evidence=RCA

GO:0010264 "myo-inositol hexakisphosphate biosynthetic process" evidence=RCA

GO:0046686 "response to cadmium ion" evidence=RCA

TAIR|locus:2182245 NF-YA1 ""nuclear factor Y, subunit A1"" [Arabidopsis thaliana (taxid:3702)]

 Score = 279 (103.3 bits), Expect = 2.0e-24, P = 2.0e-24
 Identities = 61/137 (44%), Positives = 79/137 (57%)

Query:   113 GHSKLASSMGPHDFVFTPPHVDYNQSVAPFQLHYAEPYFSGLLSPFLPPQAMIHHPQMMG 172
             G+    S    HD     P       +A     Y +PY+ GL+  +   Q +   P + G
Sbjct:   100 GNDPALSIRNMHDQPLVQPPELVGHYIACVPNPYQDPYYGGLMGAY-GHQQLGFRPYL-G 157

Query:   173 MAPARVPLPLELAEDEPIYVNAKQYRAILRRRQYRAKLEAQNKLVKGRKPYLHESRHAHA 232
             M   R  LPL++A+ EP+YVNAKQY  ILRRR+ RAK E + K+++ RKPYLHESRH HA
Sbjct:   158 MPRERTALPLDMAQ-EPVYVNAKQYEGILRRRKARAKAELERKVIRDRKPYLHESRHKHA 216

Query:   233 MNRARGSGGRFLNTKKV 249
             M RAR SGGRF    +V
Sbjct:   217 MRRARASGGRFAKKSEV 233

GO:0003677 "DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;IGI;ISS

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0009793 "embryo development ending in seed dormancy" evidence=NAS

GO:0016602 "CCAAT-binding factor complex" evidence=IEA;ISS

GO:0048510 "regulation of timing of transition from vegetative to reproductive phase" evidence=IMP

GO:0009790 "embryo development" evidence=IMP

GO:0010262 "somatic embryogenesis" evidence=IMP

GO:0048316 "seed development" evidence=IMP

GO:0055046 "microgametogenesis" evidence=IMP

ZFIN|ZDB-GENE-040718-491 nfyal "nuclear transcription factor Y, alpha, like" [Danio rerio (taxid:7955)]

 Score = 262 (97.3 bits), Expect = 1.6e-22, P = 1.6e-22
 Identities = 56/95 (58%), Positives = 66/95 (69%)

Query:   160 PPQAMIHHPQMMGMAPA--RVPLP-LELAEDEPIYVNAKQYRAILRRRQYRAKLEAQNKL 216
             PP  M+  P   G  PA  R+PLP  E+ E+EP+YVNAKQY  IL+RRQ RAKLEA+ K+
Sbjct:   270 PPDEMV--PGS-GAVPAIQRIPLPGAEMLEEEPLYVNAKQYHRILKRRQARAKLEAEGKI 326

Query:   217 VKGRKPYLHESRHAHAMNRARGSGGRFLNTKKVPE 251
              K RK YLHESRH HAM R RG GGRF + K+  E
Sbjct:   327 PKERKKYLHESRHKHAMQRKRGDGGRFFSPKEKEE 361

GO:0003677 "DNA binding" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA

GO:0016602 "CCAAT-binding factor complex" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

TAIR|locus:2144113 NF-YA10 ""nuclear factor Y, subunit A10"" [Arabidopsis thaliana (taxid:3702)]

 Score = 255 (94.8 bits), Expect = 7.0e-22, P = 7.0e-22
 Identities = 67/169 (39%), Positives = 88/169 (52%)

Query:   131 PHVDYNQSVAPFQLHYAEPYFSGLLSPFLPPQ--AMIHHPQMMGMAPARVPLPLELAEDE 188
             PHV +    A F+  +A+P       P +      +  +          +PL +E  ED 
Sbjct:    76 PHVAFAMQSACFEFGFAQPMMY-TKHPHVEQYYGVVSAYGSQRSSGRVMIPLKMETEEDG 134

Query:   189 PIYVNAKQYRAILRRRQYRAKLEAQNKLVKGRKPYLHESRHAHAMNRARGSGGRFLNTKK 248
              IYVN+KQY  I+RRRQ RAK E   KL + RKPY+H SRH HAM R RGSGGRFLNTK 
Sbjct:   135 TIYVNSKQYHGIIRRRQSRAKAE---KLSRCRKPYMHHSRHLHAMRRPRGSGGRFLNTKT 191

Query:   249 VPESKRNLTNNELDMSESEAHRENYKDGGSTTSC-SDIT-SASNSEDIF 295
                +K++  +N    S    H EN     S  +  S+++ SA  S D F
Sbjct:   192 ADAAKQSKPSNS--QSSEVFHPENETINSSREANESNLSDSAVTSMDYF 238

GO:0003677 "DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0016602 "CCAAT-binding factor complex" evidence=IEA;ISS

GO:0009718 "anthocyanin-containing compound biosynthetic process" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q93ZH2	NFYA3_ARATH	No assigned EC number	0.4606	0.9373	0.9235	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	335
pfam02045	57	pfam02045, CBFB_NFYA, CCAAT-binding transcription	5e-36
smart00521	62	smart00521, CBF, CCAAT-Binding transcription Facto	7e-35
COG5224	248	COG5224, HAP2, CCAAT-binding factor, subunit B [Tr	3e-09

>gnl|CDD|190198 pfam02045, CBFB_NFYA, CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B

 Score =  124 bits (313), Expect = 5e-36
 Identities = 48/57 (84%), Positives = 50/57 (87%)

Query: 187 DEPIYVNAKQYRAILRRRQYRAKLEAQNKLVKGRKPYLHESRHAHAMNRARGSGGRF 243
           DEPIYVNAKQY  ILRRRQ RAKLEA+NKL+K RKPYLHESRH HAM R RGSGGRF
Sbjct: 1   DEPIYVNAKQYHRILRRRQARAKLEAENKLIKSRKPYLHESRHKHAMRRPRGSGGRF 57

Length = 57

>gnl|CDD|128795 smart00521, CBF, CCAAT-Binding transcription Factor

 Score =  121 bits (305), Expect = 7e-35
 Identities = 51/62 (82%), Positives = 53/62 (85%)

Query: 185 AEDEPIYVNAKQYRAILRRRQYRAKLEAQNKLVKGRKPYLHESRHAHAMNRARGSGGRFL 244
           AE+EP+YVNAKQY  ILRRRQ RAKLEAQ KL K RKPYLHESRH HAM R RGSGGRFL
Sbjct: 1   AEEEPVYVNAKQYHRILRRRQARAKLEAQGKLPKERKPYLHESRHLHAMRRPRGSGGRFL 60

Query: 245 NT 246
           NT
Sbjct: 61  NT 62

Length = 62

>gnl|CDD|227549 COG5224, HAP2, CCAAT-binding factor, subunit B [Transcription]

 Score = 56.7 bits (136), Expect = 3e-09
 Identities = 29/67 (43%), Positives = 36/67 (53%), Gaps = 2/67 (2%)

Query: 188 EPIYVNAKQYRAILRRRQYRAKLEAQNKLVKGRKPYLHESRHAHAMNRARGSGGRFLNTK 247
           +P YVNAKQ   I +R   R  L+  + +  GR  YLHESRH HAM R R   GRFL   
Sbjct: 159 QPDYVNAKQGNEISKRPGLRVYLD--DSVSAGRAFYLHESRHKHAMLRVRDPTGRFLTAS 216

Query: 248 KVPESKR 254
           ++     
Sbjct: 217 EIDPLNL 223

Length = 248

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	335
KOG1561	307	consensus CCAAT-binding factor, subunit B (HAP2) [	100.0
smart00521	62	CBF CCAAT-Binding transcription Factor.	100.0
PF02045	58	CBFB_NFYA: CCAAT-binding transcription factor (CBF	100.0
COG5224	248	HAP2 CCAAT-binding factor, subunit B [Transcriptio	99.83

>KOG1561 consensus CCAAT-binding factor, subunit B (HAP2) [Transcription]

Probab=100.00  E-value=7.7e-50  Score=378.31  Aligned_cols=256  Identities=29%  Similarity=0.340  Sum_probs=185.7

Q ss_pred             cccceeeccccccccccccccccccCCCCcccc-CCCCc---ccccccccCC-------CCCCccccCCCCCCcccccCC
Q 019806           43 CLSLKMAVPRQQFANTKQLSFQFQDQESSSTQS-TGQSC---SKEACVKDDN-------PSRQSVVSAPPGFNGIHVKPV  111 (335)
Q Consensus        43 ~lslk~~~~~~~~~~~K~~~~q~~dqdSsStqS-tgqS~---~ev~~~~~~~-------~~~q~~~s~~~~~~g~~~k~~  111 (335)
                      .+..+.....+....++..+.+++++||+.++| ++++.   .|++.-++.+       ..-|..++..+.+.  ++++.
T Consensus        22 q~~~~~~~~~~~~p~~~~s~~~~q~~~s~~~~s~~g~~~~~~~e~~~~~~~~~~~~~~~~~~~v~~s~~s~~~--~v~~~   99 (307)
T KOG1561|consen   22 QKPEERGVQTTKKPYLHESGHKHQMGPGGRFLSADGVSKLRAQEAANGGSTGDDVNATNNDAQVAATVSSEVT--HVEGY   99 (307)
T ss_pred             ccccccccccccccccCcccccccccccccccCccccccccccccccccccccccccccccceeeeccCCcce--ecccc
Confidence            445555666677778999999999999999999 67777   5766665554       34455555555433  24555


Q ss_pred             CCccccc-cccCCCCcc-cCCCC-CCCCCcccccc-CCCCCCcccccccC--CCCCccc-ccCCcccCCCC-CccCCCcc
Q 019806          112 GGHSKLA-SSMGPHDFV-FTPPH-VDYNQSVAPFQ-LHYAEPYFSGLLSP--FLPPQAM-IHHPQMMGMAP-ARVPLPLE  183 (335)
Q Consensus       112 ~~~~k~~-~~~~~~d~~-~~~~q-~~~gqs~a~~~-ypy~dpyygg~~aa--~Yg~q~~-~~~p~~~G~~~-~r~pLP~~  183 (335)
                      .+..++. .++++.-.. .+... .-..+..+++. +||.+|||+|++..  +|++|+. .+++++.||.+ .|+|||.+
T Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~s~~~~~~p~~~g~~~~~~~y~~~~~~~~~~q~~g~~~~~r~pLP~~  179 (307)
T KOG1561|consen  100 ADSNDSRPSSISNSSESPAPINSATASMSPANNTSGNPITSPHYRGVLDMSGAYSGQPTNTASTQYSGPVPHDRTPLPQT  179 (307)
T ss_pred             ccccccccccccccccccCcccccccccccccccccCCCCCCcccceecccccccCCCCccccccccCCCCcCcccCCcc
Confidence            5555542 223322211 11111 12445555554 78899999999994  4999987 67999999999 99999999


Q ss_pred             cCCCCceeechhhhHHHHHHHHHHHHHHHhcccccCCCCccccccccccccccCCCCCccccCCCccccccccCCCCCC-
Q 019806          184 LAEDEPIYVNAKQYRAILRRRQYRAKLEAQNKLVKGRKPYLHESRHAHAMNRARGSGGRFLNTKKVPESKRNLTNNELD-  262 (335)
Q Consensus       184 ~~e~ePvyVNaKQy~rIlrRR~~Rakle~~~kl~k~rk~YlHESRH~HAm~R~Rg~gGRFl~~~e~~~~~~~~~~~~~~-  262 (335)
                      +.|+|||||||||||||||||++|||||+++||+|.||||||||||+|||||+||+|||||++||.++........+.. 
T Consensus       180 ~~e~ePl~VNaKQY~~IlrRRq~RaKlEa~~klik~RkpYLHESRH~HAmkR~RG~GGRFln~k~~~~~ss~~~~~~~~~  259 (307)
T KOG1561|consen  180 DSETEPLYVNAKQYHRILRRRQARAKLEATTKLIKARKPYLHESRHLHAMKRARGEGGRFLNTKEYHDDSSFIPHNPMDS  259 (307)
T ss_pred             ccCCCceeEcHHHHHHHHHHHHHHhhhhhcccchhhcCccccchhhHHHhhcccCCCCCCCchhhhhhhcccCCCCCCCc
Confidence            9999999999999999999999999999999999999999999999999999999999999999966544322222211 


Q ss_pred             --------cchhhhcccCCCCCCccccCCccccccCCcccccC-CCc
Q 019806          263 --------MSESEAHRENYKDGGSTTSCSDITSASNSEDIFQQ-PEF  300 (335)
Q Consensus       263 --------~s~~~~~~~~~~~~~s~~s~Sdvts~sn~~~~f~q-~~~  300 (335)
                              ++..++.........++++++|++.+.+..++|.+ .+|
T Consensus       260 ~~s~~~~~ps~~~~~~~~~~~~~s~~~~~s~~~~~~~~~~~g~~~~~  306 (307)
T KOG1561|consen  260 IDSSDVNDPTATGLPVDIDPLNLTGNTQDSMIIGQQTYPSHGSSGTM  306 (307)
T ss_pred             cCcccccCCcccccccCCCCCCCCCCcccceeeccccccccccccCC
Confidence                    22222222123345667788888888888888875 554

>smart00521 CBF CCAAT-Binding transcription Factor

Probab=100.00  E-value=2.3e-37  Score=236.26  Aligned_cols=61  Identities=82%  Similarity=1.205  Sum_probs=59.6

Q ss_pred             CCCceeechhhhHHHHHHHHHHHHHHHhcccccCCCCccccccccccccccCCCCCccccC
Q 019806          186 EDEPIYVNAKQYRAILRRRQYRAKLEAQNKLVKGRKPYLHESRHAHAMNRARGSGGRFLNT  246 (335)
Q Consensus       186 e~ePvyVNaKQy~rIlrRR~~Rakle~~~kl~k~rk~YlHESRH~HAm~R~Rg~gGRFl~~  246 (335)
                      +|+|||||||||++|||||++|||+|+++||++.||||||||||+|||+|+||+||||||+
T Consensus         2 ~~~piyVNaKQy~~IlrRR~~Rak~e~~~kl~~~rkpYlhESRH~HAm~R~Rg~gGRFl~~   62 (62)
T smart00521        2 EEEPVYVNAKQYHRILRRRQARAKLEAQGKLPKERKPYLHESRHLHAMRRPRGSGGRFLNT   62 (62)
T ss_pred             CCcceeEcHHHHHHHHHHHHHHHHHHHhcchhhccCCcccchhHHHHHccCcCCCCCCCCC
Confidence            6799999999999999999999999999999999999999999999999999999999985

>PF02045 CBFB_NFYA: CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B; InterPro: IPR001289 The CCAAT-binding factor (CBFB/NF-YA) is a mammalian transcription factor that binds to a CCAAT motif in the promoters of a wide variety of genes, including type I collagen and albumin []

Probab=100.00  E-value=4.6e-35  Score=221.33  Aligned_cols=57  Identities=79%  Similarity=1.200  Sum_probs=56.2

Q ss_pred             CCceeechhhhHHHHHHHHHHHHHHHhccc-ccCCCCccccccccccccccCCCCCcc
Q 019806          187 DEPIYVNAKQYRAILRRRQYRAKLEAQNKL-VKGRKPYLHESRHAHAMNRARGSGGRF  243 (335)
Q Consensus       187 ~ePvyVNaKQy~rIlrRR~~Rakle~~~kl-~k~rk~YlHESRH~HAm~R~Rg~gGRF  243 (335)
                      |+|||||||||++|||||++|||||+++|| ++.||||||||||+|||+|+||+||||
T Consensus         1 ~~piyVNaKQY~rIlrRR~~Rakle~~~k~~~~~rk~YlheSRH~HA~~R~Rg~gGRF   58 (58)
T PF02045_consen    1 EEPIYVNAKQYHRILRRRQARAKLEAEGKLSPKKRKPYLHESRHKHAMRRPRGPGGRF   58 (58)
T ss_pred             CCCeeECHHHHHHHHHHHHHHHHHHHhCCcchhhhHHHHHHHHHHHHHcCccCCCCCC
Confidence            599999999999999999999999999999 999999999999999999999999999

The factor is a heteromeric complex of A and B subunits, both of which are required for DNA-binding []. The subunits can interact in the absence of DNA-binding, conserved regions in each being important in mediating this interaction. The B subunit contains a region of similarity with the yeast protein HAP2 []. For the B subunit it has been suggested that the N-terminal portion of the conserved region is involved in subunit interaction and the C-terminal region involved in DNA-binding [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>COG5224 HAP2 CCAAT-binding factor, subunit B [Transcription]

Probab=99.83  E-value=1.3e-21  Score=180.06  Aligned_cols=68  Identities=43%  Similarity=0.572  Sum_probs=62.5

Q ss_pred             CCceeechhhhHHHHHHHHHHHHHHHhcccccCCCCccccccccccccccCCCCCccccCCCcccccccc
Q 019806          187 DEPIYVNAKQYRAILRRRQYRAKLEAQNKLVKGRKPYLHESRHAHAMNRARGSGGRFLNTKKVPESKRNL  256 (335)
Q Consensus       187 ~ePvyVNaKQy~rIlrRR~~Rakle~~~kl~k~rk~YlHESRH~HAm~R~Rg~gGRFl~~~e~~~~~~~~  256 (335)
                      .+|.|||||||++|+|||-+|++|+..  |.-.|..|||||||+|||+|+|+++||||+++|+++++.+.
T Consensus       158 fqp~Yvnakq~n~i~kr~~~r~~ld~~--~~~~r~~ylHesrhkham~r~r~ptgrfLtasEi~~ln~tG  225 (248)
T COG5224         158 FQPDYVNAKQGNEISKRPGLRVYLDDS--VSAGRAFYLHESRHKHAMLRVRDPTGRFLTASEIDPLNLTG  225 (248)
T ss_pred             cCcchhhhhhhhHHhcchhHHHHHHHH--hhhhhhhccccchhhhhhhcccCCCcceecHHhhhhhhhcC
Confidence            589999999999999999999999985  55677779999999999999999999999999999999653

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	335
4awl_A	78	The Nf-y Transcription Factor Is Structurally And F		3e-17
4g91_A	64	Ccaat-Binding Complex From Aspergillus Nidulans Len		4e-15

>pdb|4AWL|A Chain A, The Nf-y Transcription Factor Is Structurally And Functionally A Sequence Specific Histone Length = 78

Iteration: 1
 Score = 85.9 bits (211), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 41/61 (67%), Positives = 48/61 (78%)
Query: 187 DEPIYVNAKQYRAILRRRQYRAKLEAQNKLVKGRKPYLHESRHAHAMNRARGSGGRFLNT 246
           +EP+YVNAKQY  IL+RRQ RAKLEA+ K+ K R+ YLHESRH HAM R RG GGRF + 
Sbjct: 2   EEPLYVNAKQYHRILKRRQARAKLEAEGKIPKERRKYLHESRHRHAMARKRGEGGRFFSP 61
Query: 247 K 247
           K
Sbjct: 62  K 62

>pdb|4G91|A Chain A, Ccaat-Binding Complex From Aspergillus Nidulans Length = 64

Iteration: 1
 Score = 79.0 bits (193), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 40/60 (66%), Positives = 45/60 (75%), Gaps = 1/60 (1%)
Query: 187 DEPIYVNAKQYRAILRRRQYRAKLEAQNKLV-KGRKPYLHESRHAHAMNRARGSGGRFLN 245
           + P+YVNAKQ+  IL+RR  R KLE Q +L  KGRKPYLHESRH HAM R RG GGRFL 
Sbjct: 2   ESPLYVNAKQFHRILKRRVARQKLEEQLRLTSKGRKPYLHESRHNHAMRRPRGPGGRFLT 61

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	335
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-06

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 46.8 bits (110), Expect = 7e-06
 Identities = 34/245 (13%), Positives = 61/245 (24%), Gaps = 105/245 (42%)

Query: 125 DFV--FTPPHVDYNQSVAPFQLHYAEPYFSGLL--SPF-LPPQAMIHHPQMMGMAPARVP 179
           DF+   T  H+  +           +      L   P  LP + +  +P+ + +    + 
Sbjct: 279 DFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESI- 337

Query: 180 LPLELAEDEPI------YVNAKQYRAILR-----------RRQYR--------AKLEAQ- 213
                  D         +VN  +   I+            R+ +         A +    
Sbjct: 338 ------RDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTIL 391

Query: 214 -----------------NKLV------KGRKP---YLHESRHAHAMNRARGSGGRFLNTK 247
                            NKL       K  K     +                  +L  K
Sbjct: 392 LSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIP---------------SIYLELK 436

Query: 248 KVPESKRNLTNNELDMSESEAHR---ENYKDGGSTTSCSDITSASNSEDIFQQPEFGFSG 304
              E++  L            HR   ++Y           I    +S+D+       +  
Sbjct: 437 VKLENEYAL------------HRSIVDHYN----------IPKTFDSDDLIPPYLDQYF- 473

Query: 305 YSSIG 309
           YS IG
Sbjct: 474 YSHIG 478

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	335
4g92_A	64	HAPB protein; transcription factor, nucleosome, mi	100.0

>4g92_A HAPB protein; transcription factor, nucleosome, minor groove binding, CCAA complex, histone fold motif, specific binding to the ccaat- nucleus; HET: DNA; 1.80A {Emericella nidulans} PDB: 4g91_A*

Probab=100.00  E-value=1.2e-37  Score=238.10  Aligned_cols=62  Identities=65%  Similarity=1.077  Sum_probs=58.8

Q ss_pred             CCceeechhhhHHHHHHHHHHHHHHHhcccc-cCCCCccccccccccccccCCCCCccccCCC
Q 019806          187 DEPIYVNAKQYRAILRRRQYRAKLEAQNKLV-KGRKPYLHESRHAHAMNRARGSGGRFLNTKK  248 (335)
Q Consensus       187 ~ePvyVNaKQy~rIlrRR~~Rakle~~~kl~-k~rk~YlHESRH~HAm~R~Rg~gGRFl~~~e  248 (335)
                      |+|||||||||++|||||++|||||++++|+ +.||||||||||+|||+|+||+||||||++|
T Consensus         2 eePiyVNaKQy~~IlrRR~~Rakle~~~kl~~~~rk~YlhESRH~HAm~R~Rg~gGRFl~~~e   64 (64)
T 4g92_A            2 ESPLYVNAKQFHRILKRRVARQKLEEQLRLTSKGRKPYLHESRHNHAMRRPRGPGGRFLTADE   64 (64)
T ss_dssp             -CCSCCCTTTHHHHHHHHHHHHHHHHHTTCCSSSCCSCSCHHHHHHHHHSCBCTTSCBCCCC-
T ss_pred             CCCeeECHHHHHHHHHHHHHHHHHHHhCCcccccccCcchhHHHHHHhcCCcCCCCccccCCC
Confidence            5999999999999999999999999999995 8899999999999999999999999999986

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00