Citrus Sinensis ID: 019808

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-----
Protein Sequence
MAAAALSLNNSTSTNSPTLNSHKPISKFTSLTKPTNVSFNFLTNTPPRLQHFRPRPSVSESSLSVPKEADAEIEADDVEDDPTQELSYLDEETDPESITEWELDFCSRPILDIRGKKIWELVVCDGSLSLQYTKYFPNNVINSITLKEAIVAICDDLGVPIPEKIRFFRSQMQTIITKACKELDIKPIPSKRCLSLLLWLEERYETVYTRHPGFQKGSKPLLALDNPFPMELPDNLFGDKWAFVQLPFSAWMNGLEVCSIETDTARGSLILSVGISTRYIYANYKKNPVTTSEAEAWEAAKKACGGLHFLAIQEELDSEDCVGFWLLLDLPPPPV
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHcccccccccccccccccccccccccEEEEEcccccccccccccEEEEEEEEEccccEEEEEccccccccHHHHHHHHHHHHHHcccccccEEEEEHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccEEEccccHHHHHccccEEEEEEEcccccEEEEcccccEEEEEEEccccccHHHHHHHHHHHHHccccEEEEEEcccccccEEEEEEEcccccccc
Secondary Structure Prediction (SSPRO)
cccEEEEcccccccccccccccccccccccccccccccccccccccccccEccccccccHHHcccHHHHccccHHccccccccEEEEEccccccccccEEEEEEccccccccccccEEEEEEEEcccccEEEEEEcccccccHHHHHHHHHHHHHHcccccccEEEEccHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccHHHccccHHEEHHHHHHHHcccccEEEEEccccccEEEEcccccEEEEEEccccHHHHHHHHHHHHHHHHcccEEEEEEEcccccccccHHHHHcccccccc
Coil and Loop (DISEMBL)
MAAAAlslnnststnsptlnshkpiskftsltkptnvsfnfltntpprlqhfrprpsvsesslsvpkeadaeieaddveddptqelsyldeetdpesiteweldfcsrpildirgKKIWELVVCdgslslqytkyfpnnvinsITLKEAIVAICddlgvpipekIRFFRSQMQTIITKACkeldikpipskrCLSLLLWLEERYETvytrhpgfqkgskpllaldnpfpmelpdnlfgdkwAFVQLPFSAWMNGLEVCSIETDTARGSLILSVGISTRYIYAnykknpvttsEAEAWEAAKKACGGLHFLAIqeeldsedcvgfwllldlppppv
Flexible Loop (DISEMBL)
maaaalslnnststnsptlnshkpiSKFTSLTKPTNVSFNFLTNTPPRLQHFrprpsvsesslsvpkeadaeieaddveddpTQELSyldeetdpesiteweldFCSRPILDIRGKKIWELVVCDGSLSLQYTKYFPNNVINSITLKEAIVAICDDLGVPIPEKIRFFRSQMQTIITKackeldikpipskRCLSLLLWLEERYETVYTrhpgfqkgskpLLALDNPFPMELPDNLFGDKWAFVQLPFSAWMNGLEVCSIETDTARGSLILSVGISTRYIYANYKKNPVTTSEAEAWEAAKKACGGLHFLAIQEELDSEDCVGFWLLLDLPPPPV
Low Complexity Region (SEG)
MaaaalslnnststnsptlnsHKPISKFTSLTKPTNVSFNFLTNTPPRLQHFRPRPSVSESSLSVPKeadaeieaddveddPTQELSYLDEETDPESITEWELDFCSRPILDIRGKKIWELVVCDGSLSLQYTKYFPNNVINSITLKEAIVAICDDLGVPIPEKIRFFRSQMQTIITKACKELDIKPIPSKRCLSLLLWLEERYETVYTRHPGFQKGSKPLLALDNPFPMELPDNLFGDKWAFVQLPFSAWMNGLEVCSIETDTARGSLILSVGISTRYIYANYKKNPVTTSeaeaweaakkaCGGLHFLAIQEELDSEDCVGFWLLLDLPPPPV
Disordered region (IsUnstruct)
*************************************************************************************************ITEWELDFCSRPILDIRGKKIWELVVCDGSLSLQYTKYFPNNVINSITLKEAIVAICDDLGVPIPEKIRFFRSQMQTIITKACKELDIKPIPSKRCLSLLLWLEERYETVYTRHPGFQKGSKPLLALDNPFPMELPDNLFGDKWAFVQLPFSAWMNGLEVCSIETDTARGSLILSVGISTRYIYANYKKNPVTTSEAEAWEAAKKACGGLHFLAIQEELDSEDCVGFWLLLDL*****
Disordered Region (DISOPRED)
********************************************************************************************TDPESITEWELDFCSRPILDIRGKKIWELVVCDGSLSLQYTKYFPNNVINSITLKEAIVAICDDLGVPIPEKIRFFRSQMQTIITKACKELDIKPIPSKRCLSLLLWLEERYETVYTRHP**************PFPMELPDNLFGDKWAFVQLPFSAWMNGLEVCSIETDTARGSLILSVGISTRYIYANYKKNPVTTS********KKACGGLHFLAIQEELDSEDCVGFWLLLDLPP***
Disordered Region (DISEMBL)
********************SHKPISKFTSLTKPTNVSFNFLTNTPPRLQHF******************AEIEADDVEDDPTQELSYLDEETDPESITEWELDFCSRPILDIRGKKIWELVVCDGSLSLQYTKYFPNNVINSITLKEAIVAICDDLGVPIPEKIRFFRSQMQTIITKACKELDIKPIPSKRCLSLLLWLEERYETVYTRHPGFQKGSKPLLALDNPFPMELPDNLFGDKWAFVQLPFSAWMNGLEVCSIETDTARGSLILSVGISTRYIYANYKKNPVTTSEAEAWEAAKKACGGLHFLAIQEELDSEDCVGFWLLLDLPPPPV
Disordered Region (DISPRO)
**********STST***************SLTKPTNVSFNFL*************************************DDPTQELSYLDEETDPESITEWELDFCSRPILDIRGKKIWELVVCDGSLSLQYTKYFPNNVINSITLKEAIVAICDDLGVPIPEKIRFFRSQMQTIITKACKELDIKPIPSKRCLSLLLWLEERYETVYTRHPGFQKGSKPLLALDNPFPMELPDNLFGDKWAFVQLPFSAWMNGLEVCSIETDTARGSLILSVGISTRYIYANYKKNPVTTSEAEAWEAAKKACGGLHFLAIQEELDSEDCVGFWLLLDLPPPP*
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAAAALSLNNSTSTNSPTLNSHKPISKFTSLTKPTNVSFNFLTNTPPRLQHFRPRPSVSESSLSVPKEADAEIEADDVEDDPTQELSYLDEETDPESITEWELDFCSRPILDIRGKKIWELVVCDGSLSLQYTKYFPNNVINSITLKEAIVAICDDLGVPIPEKIRFFRSQMQTIITKACKELDIKPIPSKRCLSLLLWLEERYETVYTRHPGFQKGSKPLLALDNPFPMELPDNLFGDKWAFVQLPFSAWMNGLEVCSIETDTARGSLILSVGISTRYIYANYKKNPVTTSEAEAWEAAKKACGGLHFLAIQEELDSEDCVGFWLLLDLPPPPV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	335
297829368	374	hypothetical protein ARALYDRAFT_478142 [	0.955	0.855	0.636	1e-126
18398129	374	RNA binding protein [Arabidopsis thalian	0.955	0.855	0.631	1e-125
255553548	377	conserved hypothetical protein [Ricinus	0.937	0.832	0.667	1e-124
225450083	378	PREDICTED: uncharacterized protein LOC10	0.943	0.835	0.683	1e-122
118489335	376	unknown [Populus trichocarpa x Populus d	0.934	0.832	0.634	1e-119
449436313	379	PREDICTED: uncharacterized protein LOC10	0.886	0.783	0.662	1e-118
388502160	382	unknown [Lotus japonicus]	0.955	0.837	0.603	1e-116
224104083	325	predicted protein [Populus trichocarpa]	0.773	0.796	0.698	1e-113
224104081	325	predicted protein [Populus trichocarpa]	0.737	0.76	0.715	1e-112
363807199	377	uncharacterized protein LOC100795572 [Gl	0.973	0.864	0.612	1e-112

>gi|297829368|ref|XP_002882566.1| hypothetical protein ARALYDRAFT_478142 [Arabidopsis lyrata subsp. lyrata] gi|297328406|gb|EFH58825.1| hypothetical protein ARALYDRAFT_478142 [Arabidopsis lyrata subsp. lyrata]

 Score =  458 bits (1178), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 238/374 (63%), Positives = 269/374 (71%), Gaps = 54/374 (14%)

Query: 10  NSTSTNSPTLNSHKPISKFTSLTKPTNVSFNFLTNTPPRLQHFRPRPSVSESSLSVPKEA 69
           N+T   +P+L     I K +S TKP      F + T  +   F  R S+ ESSLS+ KE 
Sbjct: 7   NTTRIQTPSLPR---IPKPSSFTKPIKTHHLFSSETLLKRCRFVSR-SLPESSLSITKEQ 62

Query: 70  DAEIEADDVEDDPTQELSYLDEETDPESITEWELDFCSRPILDIRGKKIWELVVCDGSLS 129
           +   E +  EDDPT ELSYLD E+D +SI EWELDFCSRPILD RGKKIWELVVCD SLS
Sbjct: 63  EVANEVE--EDDPTSELSYLDPESDADSIKEWELDFCSRPILDSRGKKIWELVVCDASLS 120

Query: 130 LQYTKYFPNNVINSITLKEAIVAICDDLGVPIPEKIRFFRSQMQTIITKACKELDIKPIP 189
           LQ TKYFPNNVINSITLK+AIV I  DLGVP+PEKIRFFRSQMQTIITKACKEL IK +P
Sbjct: 121 LQVTKYFPNNVINSITLKDAIVTITQDLGVPLPEKIRFFRSQMQTIITKACKELAIKAVP 180

Query: 190 SKRCLSLLLWLEERYETVYTRHPGFQKGSKPLLALDNPFPMELPDNLFGDKWAFVQLPFS 249
           SKRCLSL LWL+ERY+TVYTRHPGFQKGS PLL+LDNPFPM LP+NLFG+KWAFVQLP+S
Sbjct: 181 SKRCLSLFLWLQERYDTVYTRHPGFQKGSLPLLSLDNPFPMNLPENLFGEKWAFVQLPYS 240

Query: 250 ------------------------------------------------AWMNGLEVCSIE 261
                                                           AWMNGLEVCSIE
Sbjct: 241 AVREEISDFEEKFVFGATLDLDLLGIEVDENTLIPGLSVATSRAKPLAAWMNGLEVCSIE 300

Query: 262 TDTARGSLILSVGISTRYIYANYKKNPVTTSEAEAWEAAKKACGGLHFLAIQEELDSEDC 321
            D+++G LILSVGI+TRY+YA YKK PVTT EAEAWE+AKKA GGLHFLAIQ++LDS+DC
Sbjct: 301 ADSSKGCLILSVGIATRYVYATYKKTPVTTDEAEAWESAKKASGGLHFLAIQDDLDSDDC 360

Query: 322 VGFWLLLDLPPPPV 335
           VGFWLL+DLPPPPV
Sbjct: 361 VGFWLLIDLPPPPV 374

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18398129|ref|NP_566327.1| RNA binding protein [Arabidopsis thaliana] gi|6648213|gb|AAF21211.1|AC013483_35 unknown protein [Arabidopsis thaliana] gi|18252181|gb|AAL61923.1| unknown protein [Arabidopsis thaliana] gi|24899681|gb|AAN65055.1| unknown protein [Arabidopsis thaliana] gi|332641109|gb|AEE74630.1| RNA binding protein [Arabidopsis thaliana]

 Score =  454 bits (1168), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 236/374 (63%), Positives = 267/374 (71%), Gaps = 54/374 (14%)

Query: 10  NSTSTNSPTLNSHKPISKFTSLTKPTNVSFNFLTNTPPRLQHFRPRPSVSESSLSVPKEA 69
           N+    +P+L     I K +S TKP      F + T  +   F  R S+ ESSLS+ KE 
Sbjct: 7   NTRRIQTPSLPR---IPKPSSFTKPIKTHHLFSSETLLKRCRFVSR-SLPESSLSITKEQ 62

Query: 70  DAEIEADDVEDDPTQELSYLDEETDPESITEWELDFCSRPILDIRGKKIWELVVCDGSLS 129
           +   E +  EDDPT ELSYLD E+D +SI EWELDFCSRPILD RGKKIWELVVCD SLS
Sbjct: 63  EVANEVE--EDDPTSELSYLDPESDADSIKEWELDFCSRPILDSRGKKIWELVVCDASLS 120

Query: 130 LQYTKYFPNNVINSITLKEAIVAICDDLGVPIPEKIRFFRSQMQTIITKACKELDIKPIP 189
           LQ TKYFPNNVINSITLK+AIV I  DLGVP+PEKIRFFRSQMQTIITKACKEL IK +P
Sbjct: 121 LQVTKYFPNNVINSITLKDAIVTITQDLGVPLPEKIRFFRSQMQTIITKACKELAIKAVP 180

Query: 190 SKRCLSLLLWLEERYETVYTRHPGFQKGSKPLLALDNPFPMELPDNLFGDKWAFVQLPFS 249
           SKRCLSL LWL+ERY+TVYTRHPGFQKGS PLL+LDNPFPM LP+NLFG+KWAFVQLP+S
Sbjct: 181 SKRCLSLFLWLQERYDTVYTRHPGFQKGSLPLLSLDNPFPMNLPENLFGEKWAFVQLPYS 240

Query: 250 ------------------------------------------------AWMNGLEVCSIE 261
                                                           AWMNGLEVCSIE
Sbjct: 241 AVREEISDFDEKFVFGASLDLDLLGIEVDENTLIPGLSVATSRAKPLAAWMNGLEVCSIE 300

Query: 262 TDTARGSLILSVGISTRYIYANYKKNPVTTSEAEAWEAAKKACGGLHFLAIQEELDSEDC 321
            D+++G LILSVGI+TRY+YA YKK PVTT EAEAWE+AKK  GGLHFLAIQ++LDS+DC
Sbjct: 301 ADSSKGCLILSVGIATRYVYATYKKTPVTTDEAEAWESAKKTSGGLHFLAIQDDLDSDDC 360

Query: 322 VGFWLLLDLPPPPV 335
           VGFWLL+DLPPPPV
Sbjct: 361 VGFWLLIDLPPPPV 374

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255553548|ref|XP_002517815.1| conserved hypothetical protein [Ricinus communis] gi|223543087|gb|EEF44622.1| conserved hypothetical protein [Ricinus communis]

 Score =  451 bits (1161), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 245/367 (66%), Positives = 277/367 (75%), Gaps = 53/367 (14%)

Query: 11  STSTNSPTLNSHKPISKFTSLTKPTNVSFNFLTNTPPRLQ----HFRPRPSVSESSLSVP 66
           +T + +PT   HKPISK TS +KPT V F  ++  PP+      HF+ + SVS       
Sbjct: 2   ATLSFNPTRIPHKPISKITSFSKPTKVYFP-VSQKPPKTHQKQLHFQSKLSVSTQEQVEV 60

Query: 67  KEADAEIEADDVEDDPTQELSYLDEETDPESITEWELDFCSRPILDIRGKKIWELVVCDG 126
           ++ D E E ++V+DDPT E+SYLD ETDP+SI EWELDFCSRPILDIRGKK+WELVVCD 
Sbjct: 61  EDYDNEEEEEEVDDDPTAEVSYLDPETDPDSIVEWELDFCSRPILDIRGKKVWELVVCDD 120

Query: 127 SLSLQYTKYFPNNVINSITLKEAIVAICDDLGVPIPEKIRFFRSQMQTIITKACKELDIK 186
           SLSLQ+TKYFPNNVINSITLK+A+V++ +DLGVP+PEKIRFFRSQMQTIITKACKEL+IK
Sbjct: 121 SLSLQFTKYFPNNVINSITLKDALVSVSEDLGVPLPEKIRFFRSQMQTIITKACKELNIK 180

Query: 187 PIPSKRCLSLLLWLEERYETVYTRHPGFQKGSKPLLALDNPFPMELPDNLFGDKWAFVQL 246
           P+PSKRCLSLLLWLEERYETVYTRHPGFQKGSKPLLALDNPFPMELP+NLFG+KWAFVQL
Sbjct: 181 PVPSKRCLSLLLWLEERYETVYTRHPGFQKGSKPLLALDNPFPMELPENLFGEKWAFVQL 240

Query: 247 PFS------------------------------------------------AWMNGLEVC 258
           PFS                                                AWMNGLEVC
Sbjct: 241 PFSAVQEEVSSLETRFMFGASLDLDLLGIEIGEKTLIPGLAVASSRAKPLAAWMNGLEVC 300

Query: 259 SIETDTARGSLILSVGISTRYIYANYKKNPVTTSEAEAWEAAKKACGGLHFLAIQEELDS 318
           SIE DT+R  LILSVG+STRYIYA YKKNPVTT+EAEAWEAAKK CGGLHFLAIQE+LDS
Sbjct: 301 SIEADTSRACLILSVGLSTRYIYATYKKNPVTTAEAEAWEAAKKTCGGLHFLAIQEDLDS 360

Query: 319 EDCVGFW 325
           EDCVGFW
Sbjct: 361 EDCVGFW 367

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225450083|ref|XP_002278058.1| PREDICTED: uncharacterized protein LOC100243060 [Vitis vinifera]

 Score =  444 bits (1143), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 255/373 (68%), Positives = 279/373 (74%), Gaps = 57/373 (15%)

Query: 4   AALSLNNSTSTNSPTLNSHKPISKFTSLTKPTNVSFNFLTN---TPPRLQHFRPRPSVSE 60
           A LSLN  T   +PTL SHKPI +F SLT PT     F TN   T P+L HFR   SVSE
Sbjct: 2   AGLSLN-PTKITTPTLQSHKPIYRFNSLTNPTKTQLKFPTNPAKTHPKLLHFR-HSSVSE 59

Query: 61  SSLSVPKEADAEIEADDVEDDPTQELSYLDEETDPESITEWELDFCSRPILDIRGKKIWE 120
           SS+SVPKE + + E DD    PT E++YLD ETDPESI+EWELDFCSRPILDIRGKKIWE
Sbjct: 60  SSVSVPKEVEVDDEEDD----PTSEMNYLDRETDPESISEWELDFCSRPILDIRGKKIWE 115

Query: 121 LVVCDGSLSLQYTKYFPNNVINSITLKEAIVAICDDLGVPIPEKIRFFRSQMQTIITKAC 180
           L+VCD SLSLQYTKYFPNNVINS+TLK AI +I D+L VP+PEKIRFFRSQMQTI+TKAC
Sbjct: 116 LLVCDSSLSLQYTKYFPNNVINSVTLKNAIESISDELDVPLPEKIRFFRSQMQTIVTKAC 175

Query: 181 KELDIKPIPSKRCLSLLLWLEERYETVYTRHPGFQKGSKPLLALDNPFPMELPDNLFGDK 240
           KEL IKPIPSKRCLSL+LWLEERYETVYTRHPGFQ+GSKPLL LDNPFPM+LP+NLFG+K
Sbjct: 176 KELGIKPIPSKRCLSLILWLEERYETVYTRHPGFQQGSKPLLTLDNPFPMQLPENLFGEK 235

Query: 241 WAFVQLPFS------------------------------------------------AWM 252
           WAFVQLPFS                                                AWM
Sbjct: 236 WAFVQLPFSAVQEEVSSLETRLVFGASLDLDLLGIEVDANTLIPGLAVASSRAKPLAAWM 295

Query: 253 NGLEVCSIETDTARGSLILSVGISTRYIYANYKKNPVTTSEAEAWEAAKKACGGLHFLAI 312
           NGLEVCSIE DTAR  LILSVGISTRYIYA YKK PVTTSEAEAWEAAKKACGGLHFLAI
Sbjct: 296 NGLEVCSIEADTARACLILSVGISTRYIYATYKKTPVTTSEAEAWEAAKKACGGLHFLAI 355

Query: 313 QEELDSEDCVGFW 325
           Q++L+S+DCVGFW
Sbjct: 356 QDDLNSDDCVGFW 368

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118489335|gb|ABK96472.1| unknown [Populus trichocarpa x Populus deltoides]

 Score =  432 bits (1112), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 233/367 (63%), Positives = 267/367 (72%), Gaps = 54/367 (14%)

Query: 11  STSTNSPTLNSHKPISKFTSLTKPTNVSFNFLTNTPPRLQHFRP----RPSVSESSLSVP 66
           +T + +PT   HKPISK  S +K + + F F  +  P   H +P       +++ S+S  
Sbjct: 2   ATLSFNPTRIPHKPISKTASFSKTSEMPFPF--SLKPSKHHVKPLHLQSNIITKLSVSTQ 59

Query: 67  KEADAEIEADDVEDDPTQELSYLDEETDPESITEWELDFCSRPILDIRGKKIWELVVCDG 126
           +E     + D  EDDPT E  YLD+ETDP+SI EWELDFCSRPILD+RGKK+WELVVCD 
Sbjct: 60  EEEVETEKEDLEEDDPTAETVYLDQETDPDSILEWELDFCSRPILDVRGKKVWELVVCDD 119

Query: 127 SLSLQYTKYFPNNVINSITLKEAIVAICDDLGVPIPEKIRFFRSQMQTIITKACKELDIK 186
           SLSLQ+TKYFPNNVINSITLK+AIV+I  DLGVP+PE+IRFFRSQMQTIITKACKE+ IK
Sbjct: 120 SLSLQFTKYFPNNVINSITLKDAIVSISVDLGVPLPERIRFFRSQMQTIITKACKEIGIK 179

Query: 187 PIPSKRCLSLLLWLEERYETVYTRHPGFQKGSKPLLALDNPFPMELPDNLFGDKWAFVQL 246
           PIPSKRC+SLLLWLEERYETVYTRHPGFQKG+KPLLALDNPFPMELPDNLFG+KWAFVQL
Sbjct: 180 PIPSKRCISLLLWLEERYETVYTRHPGFQKGAKPLLALDNPFPMELPDNLFGEKWAFVQL 239

Query: 247 PFS------------------------------------------------AWMNGLEVC 258
           PFS                                                AWMNGLEVC
Sbjct: 240 PFSAVREEIASFETSFFFGASLDLDLLGIEIDDKTMIPGLAVASSRAEPLAAWMNGLEVC 299

Query: 259 SIETDTARGSLILSVGISTRYIYANYKKNPVTTSEAEAWEAAKKACGGLHFLAIQEELDS 318
           +IE DT+R  LILSVGI+TRY+YA YKK PVTT+EAEAWEAAKKACGGLHFLAIQ +LDS
Sbjct: 300 AIEADTSRACLILSVGIATRYVYATYKKTPVTTAEAEAWEAAKKACGGLHFLAIQNDLDS 359

Query: 319 EDCVGFW 325
           +DCVGFW
Sbjct: 360 DDCVGFW 366

Source: Populus trichocarpa x Populus deltoides

Species: Populus trichocarpa x Populus deltoides

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449436313|ref|XP_004135937.1| PREDICTED: uncharacterized protein LOC101208052 [Cucumis sativus] gi|449488836|ref|XP_004158187.1| PREDICTED: uncharacterized protein LOC101230638 [Cucumis sativus]

 Score =  429 bits (1104), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 234/353 (66%), Positives = 265/353 (75%), Gaps = 56/353 (15%)

Query: 23  KPI-SKFTSLTKPTN-VSFNFLTNTPPRLQHFRPRPSVSESSLSVPKEADAEIEADDVED 80
           KPI S F+   K  N  S N   +  P L  FR   SVSESS++ P+E    +E ++ ED
Sbjct: 23  KPIYSPFSQSIKTANRFSANGRISQQP-LPRFRSN-SVSESSVTAPEE----VELNEDED 76

Query: 81  DPTQELSYLDEETDPESITEWELDFCSRPILDIRGKKIWELVVCDGSLSLQYTKYFPNNV 140
           DPT E++YLD ETDPESITEWELDFCSRPILDIRGKK+WELVVCD SLSLQYTKYFPNNV
Sbjct: 77  DPTLEMAYLDSETDPESITEWELDFCSRPILDIRGKKVWELVVCDNSLSLQYTKYFPNNV 136

Query: 141 INSITLKEAIVAICDDLGVPIPEKIRFFRSQMQTIITKACKELDIKPIPSKRCLSLLLWL 200
           INSITL++A+ +I ++LGVP+P+KIRFFRSQMQTIITKAC EL IKPIPSKRCLSLLLWL
Sbjct: 137 INSITLRDAVSSIAEELGVPLPDKIRFFRSQMQTIITKACTELGIKPIPSKRCLSLLLWL 196

Query: 201 EERYETVYTRHPGFQKGSKPLLALDNPFPMELPDNLFGDKWAFVQLPFS----------- 249
           EERYETVYTRHPGFQKGSKPLLALDNPFPMELP+NLFG++WAFVQLPFS           
Sbjct: 197 EERYETVYTRHPGFQKGSKPLLALDNPFPMELPENLFGERWAFVQLPFSAVQEEISNLKE 256

Query: 250 -------------------------------------AWMNGLEVCSIETDTARGSLILS 272
                                                AWMNG+EV S+E DT+R SLILS
Sbjct: 257 TFMFGSSLDLDLLGIEIDDKTMIPGLSVATSRAQPLAAWMNGMEVYSVEADTSRASLILS 316

Query: 273 VGISTRYIYANYKKNPVTTSEAEAWEAAKKACGGLHFLAIQEELDSEDCVGFW 325
           VGI+TRY+YA YKK PVT++EAEAWEAAKKACGGLHFLAIQ++LDSEDCVGFW
Sbjct: 317 VGIATRYVYATYKKTPVTSAEAEAWEAAKKACGGLHFLAIQDDLDSEDCVGFW 369

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388502160|gb|AFK39146.1| unknown [Lotus japonicus]

 Score =  423 bits (1088), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 225/373 (60%), Positives = 270/373 (72%), Gaps = 53/373 (14%)

Query: 4   AALSLNNSTSTNSPTLNSHKPISKFTSLTKPTNVSF--NFLTNTPPRLQHFRPRPSVSES 61
           A LS N  T   +PT N   P +K TS +KP  +    + + ++  +L HFR   SVSE+
Sbjct: 2   ATLSFN-PTRIRTPTFNRSNPSTKLTSSSKPIRIPCIPSSINHSHQKLIHFRAN-SVSET 59

Query: 62  SLSVPKEADAEIEADDVEDD-PTQELSYLDEETDPESITEWELDFCSRPILDIRGKKIWE 120
           SLS  KE + E   D+ EDD PT E+S+LD ETDP++I++WELDFCSRPILD RGKK+WE
Sbjct: 60  SLSTQKEEEQETLGDEEEDDDPTAEMSFLDPETDPDAISDWELDFCSRPILDARGKKLWE 119

Query: 121 LVVCDGSLSLQYTKYFPNNVINSITLKEAIVAICDDLGVPIPEKIRFFRSQMQTIITKAC 180
           LVVCD +LSLQ+TKYFPNNVINSITLK+A+V++CDDLG+P+P+KIRFFRSQMQTIIT+AC
Sbjct: 120 LVVCDSTLSLQFTKYFPNNVINSITLKDAVVSVCDDLGLPLPKKIRFFRSQMQTIITRAC 179

Query: 181 KELDIKPIPSKRCLSLLLWLEERYETVYTRHPGFQKGSKPLLALDNPFPMELPDNLFGDK 240
            EL IKP+PSKRCLSLLLWLEERYETVY +HPGFQKG  PLLALDNPFP +LP++LFG++
Sbjct: 180 NELGIKPVPSKRCLSLLLWLEERYETVYKKHPGFQKGFTPLLALDNPFPTKLPEDLFGER 239

Query: 241 WAFVQLPF------------------------------------------------SAWM 252
           WAFVQLPF                                                SA M
Sbjct: 240 WAFVQLPFSAVREELTSLQTNMIFGSGLDLDLMGIEIDDKTMIPGLAVGSSRATVLSAIM 299

Query: 253 NGLEVCSIETDTARGSLILSVGISTRYIYANYKKNPVTTSEAEAWEAAKKACGGLHFLAI 312
           N  E+C++E DTARGSLILSVGISTRY+YA YKK P TTSEAEAWEAAKKACGGLHFLAI
Sbjct: 300 NSFELCTVEADTARGSLILSVGISTRYVYATYKKTPTTTSEAEAWEAAKKACGGLHFLAI 359

Query: 313 QEELDSEDCVGFW 325
           Q++++SE+C GFW
Sbjct: 360 QQDIESEECAGFW 372

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224104083|ref|XP_002313311.1| predicted protein [Populus trichocarpa] gi|222849719|gb|EEE87266.1| predicted protein [Populus trichocarpa]

 Score =  415 bits (1066), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 215/308 (69%), Positives = 239/308 (77%), Gaps = 49/308 (15%)

Query: 67  KEADAEIEADDVE-DDPTQELSYLDEETDPESITEWELDFCSRPILDIRGKKIWELVVCD 125
           +E + E E  D E DDPT E+ YLD ETDP+SI EWELDFCSRPILD+RGKK+WELVVCD
Sbjct: 8   QEEEVETEKKDYEEDDPTTEMVYLDPETDPDSIVEWELDFCSRPILDVRGKKVWELVVCD 67

Query: 126 GSLSLQYTKYFPNNVINSITLKEAIVAICDDLGVPIPEKIRFFRSQMQTIITKACKELDI 185
            SLSLQ+TKYFPNNVINSITLK+AIV+I +DLGVP+PE+IRFFRSQMQTIITKACKE+ I
Sbjct: 68  DSLSLQFTKYFPNNVINSITLKDAIVSISEDLGVPLPERIRFFRSQMQTIITKACKEIGI 127

Query: 186 KPIPSKRCLSLLLWLEERYETVYTRHPGFQKGSKPLLALDNPFPMELPDNLFGDKWAFVQ 245
           KPIPSKRC+SLLLWLEERYETVYTRHPGFQKG+KPLLALDNPFPMELPDNLFG+KWAFVQ
Sbjct: 128 KPIPSKRCISLLLWLEERYETVYTRHPGFQKGAKPLLALDNPFPMELPDNLFGEKWAFVQ 187

Query: 246 LPFS------------------------------------------------AWMNGLEV 257
           LP+S                                                AWMNGLEV
Sbjct: 188 LPYSAVREEIASLETSFFFGASLDLDLLGIEIDDKTMIPGLAVASSRAEPLAAWMNGLEV 247

Query: 258 CSIETDTARGSLILSVGISTRYIYANYKKNPVTTSEAEAWEAAKKACGGLHFLAIQEELD 317
            +IE DT+R  LILSVGI+TRY+YA YKK PVTT+EAEAWEAAKKACGGLHFLAIQ +LD
Sbjct: 248 VAIEADTSRACLILSVGIATRYVYATYKKTPVTTAEAEAWEAAKKACGGLHFLAIQNDLD 307

Query: 318 SEDCVGFW 325
           S+DCVGFW
Sbjct: 308 SDDCVGFW 315

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224104081|ref|XP_002313310.1| predicted protein [Populus trichocarpa] gi|222849718|gb|EEE87265.1| predicted protein [Populus trichocarpa]

 Score =  409 bits (1052), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 211/295 (71%), Positives = 231/295 (78%), Gaps = 48/295 (16%)

Query: 79  EDDPTQELSYLDEETDPESITEWELDFCSRPILDIRGKKIWELVVCDGSLSLQYTKYFPN 138
           EDDPT E  YLD+ETDP+SI EWELDFCSRPILD+RGKK+WELVVCD SLSLQ+TKYFPN
Sbjct: 21  EDDPTAETVYLDQETDPDSIVEWELDFCSRPILDVRGKKVWELVVCDDSLSLQFTKYFPN 80

Query: 139 NVINSITLKEAIVAICDDLGVPIPEKIRFFRSQMQTIITKACKELDIKPIPSKRCLSLLL 198
           NVINSITLK+AIV+I  DLGVP+PE+IRFFRSQM TIITKACKE+ IKPIPSKRC+SLLL
Sbjct: 81  NVINSITLKDAIVSISVDLGVPLPERIRFFRSQMLTIITKACKEIGIKPIPSKRCISLLL 140

Query: 199 WLEERYETVYTRHPGFQKGSKPLLALDNPFPMELPDNLFGDKWAFVQLPFS--------- 249
           WLEERYETVYTRHPGFQKG+KPLLALDNPFPMELPDNLFG+KWAFVQLPFS         
Sbjct: 141 WLEERYETVYTRHPGFQKGAKPLLALDNPFPMELPDNLFGEKWAFVQLPFSAVREEIASL 200

Query: 250 ---------------------------------------AWMNGLEVCSIETDTARGSLI 270
                                                  AWMNGLEV +IE DT+R  LI
Sbjct: 201 ETRFFFGASLDLDLLGIEIDDKTMIPGLAVASSRAEPLAAWMNGLEVVAIEADTSRACLI 260

Query: 271 LSVGISTRYIYANYKKNPVTTSEAEAWEAAKKACGGLHFLAIQEELDSEDCVGFW 325
           LSVGI+TRY+YA YKK PVTT+EAEAWEAAKKACGGLHFLAIQ +LDS+DCVGFW
Sbjct: 261 LSVGIATRYVYATYKKTPVTTAEAEAWEAAKKACGGLHFLAIQNDLDSDDCVGFW 315

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|363807199|ref|NP_001242607.1| uncharacterized protein LOC100795572 [Glycine max] gi|255640179|gb|ACU20380.1| unknown [Glycine max]

 Score =  409 bits (1051), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 234/382 (61%), Positives = 269/382 (70%), Gaps = 56/382 (14%)

Query: 4   AALSLNNSTSTNSPTLNSHKPISKFTSLTKPTNVSFNFLTNTPPRLQHFRPRPSVSESSL 63
           A LS N      SPT       SK T+ +K   +     +N+ P+L HFRPR SVSES+ 
Sbjct: 2   ATLSFN-PVRIKSPTFKH----SKLTTPSKRITIPCTTPSNSHPKLLHFRPR-SVSESTQ 55

Query: 64  SVPKEA---DAEIEADDVEDDPTQELSYLDEETDPESITEWELDFCSRPILDIRGKKIWE 120
               EA   + E E +D +DDP+ ELSY+D  TDPESITEWELDFCSRPILD RGKK+WE
Sbjct: 56  KEAPEAVLGEEEEEEEDDDDDPSAELSYVDPVTDPESITEWELDFCSRPILDARGKKVWE 115

Query: 121 LVVCDGSLSLQYTKYFPNNVINSITLKEAIVAICDDLGVPIPEKIRFFRSQMQTIITKAC 180
           LVVC  +LSLQYTKYFPNNVINSITLK+AIVA+ D LGVP+P  IRFFRSQMQTIIT AC
Sbjct: 116 LVVCGKTLSLQYTKYFPNNVINSITLKDAIVAVSDQLGVPLPRNIRFFRSQMQTIITNAC 175

Query: 181 KELDIKPIPSKRCLSLLLWLEERYETVYTRHPGFQKGSKPLLALDNPFPMELPDNLFGDK 240
            EL I+P+PSKRC+S++LWLEERYETVY +HPGFQ+GSKPLLALDNPFP ELPD L+G++
Sbjct: 176 NELRIRPVPSKRCVSIILWLEERYETVYKKHPGFQEGSKPLLALDNPFPTELPDILYGER 235

Query: 241 WAFVQLPFS-----------------------------------------------AWMN 253
           WAFVQLP+S                                               A +N
Sbjct: 236 WAFVQLPYSAVREEISTFERGVCGSGLDLDLLGLDIDDKTLIPGLSVASSNSTALAALIN 295

Query: 254 GLEVCSIETDTARGSLILSVGISTRYIYANYKKNPVTTSEAEAWEAAKKACGGLHFLAIQ 313
           GLEVC++E DTAR  LILS GISTRYIY+ YKK P TTSEAEAWEAAKKACGGLHFLA+Q
Sbjct: 296 GLEVCAVEADTARARLILSSGISTRYIYSTYKKTPETTSEAEAWEAAKKACGGLHFLAVQ 355

Query: 314 EELDSEDCVGFWLLLDLPPPPV 335
            +LDSEDCVGF+LLLDLP PPV
Sbjct: 356 PDLDSEDCVGFFLLLDLPFPPV 377

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	335
TAIR|locus:2077432	374	ATAB2 [Arabidopsis thaliana (t	0.665	0.596	0.707	6.1e-114

TAIR|locus:2077432 ATAB2 [Arabidopsis thaliana (taxid:3702)]

 Score = 801 (287.0 bits), Expect = 6.1e-114, Sum P(2) = 6.1e-114
 Identities = 160/226 (70%), Positives = 176/226 (77%)

Query:    25 ISKFTSLTKPTNVSFNFLTNTPPRLQHFRPRPSVSESSLSVPKXXXXXXXXXXXXXXPTQ 84
             I K +S TKP      F + T  +   F  R S+ ESSLS+ K              PT 
Sbjct:    19 IPKPSSFTKPIKTHHLFSSETLLKRCRFVSR-SLPESSLSITKEQEVANEVEEDD--PTS 75

Query:    85 ELSYLDEETDPESITEWELDFCSRPILDIRGKKIWELVVCDGSLSLQYTKYFPNNVINSI 144
             ELSYLD E+D +SI EWELDFCSRPILD RGKKIWELVVCD SLSLQ TKYFPNNVINSI
Sbjct:    76 ELSYLDPESDADSIKEWELDFCSRPILDSRGKKIWELVVCDASLSLQVTKYFPNNVINSI 135

Query:   145 TLKEAIVAICDDLGVPIPEKIRFFRSQMQTIITKACKELDIKPIPSKRCLSLLLWLEERY 204
             TLK+AIV I  DLGVP+PEKIRFFRSQMQTIITKACKEL IK +PSKRCLSL LWL+ERY
Sbjct:   136 TLKDAIVTITQDLGVPLPEKIRFFRSQMQTIITKACKELAIKAVPSKRCLSLFLWLQERY 195

Query:   205 ETVYTRHPGFQKGSKPLLALDNPFPMELPDNLFGDKWAFVQLPFSA 250
             +TVYTRHPGFQKGS PLL+LDNPFPM LP+NLFG+KWAFVQLP+SA
Sbjct:   196 DTVYTRHPGFQKGSLPLLSLDNPFPMNLPENLFGEKWAFVQLPYSA 241

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0003723 "RNA binding" evidence=IDA

GO:0006412 "translation" evidence=IMP

GO:0009658 "chloroplast organization" evidence=IMP

GO:0009704 "de-etiolation" evidence=IEP

GO:0006364 "rRNA processing" evidence=RCA

GO:0009073 "aromatic amino acid family biosynthetic process" evidence=RCA

GO:0009902 "chloroplast relocation" evidence=RCA

GO:0010027 "thylakoid membrane organization" evidence=RCA

GO:0010155 "regulation of proton transport" evidence=RCA

GO:0010207 "photosystem II assembly" evidence=RCA

GO:0016226 "iron-sulfur cluster assembly" evidence=RCA

GO:0016556 "mRNA modification" evidence=RCA

GO:0019761 "glucosinolate biosynthetic process" evidence=RCA

GO:0034660 "ncRNA metabolic process" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

GO:0042793 "transcription from plastid promoter" evidence=RCA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

GO:0046777 "protein autophosphorylation" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	fgenesh2_kg.3__843__AT3G08010.1	annotation not avaliable (374 aa)
		(Arabidopsis lyrata)
Predicted Functional Partners:
	fgenesh2_kg.8__1751__AT5G58260.1	annotation not avaliable (209 aa)			•	•					0.666
	fgenesh2_kg.7__3536__AT5G38660.1	annotation not avaliable (287 aa)			•	•					0.661
	scaffold_302117.1	annotation not avaliable (190 aa)			•	•					0.661
	scaffold_701391.1	annotation not avaliable (183 aa)			•	•					0.648
	fgenesh2_kg.8__1178__AT5G52970.1	annotation not avaliable (222 aa)			•	•					0.647
	scaffold_304439.1	annotation not avaliable (298 aa)			•	•					0.642
	fgenesh2_kg.5__1948__AT3G55330.1	annotation not avaliable (229 aa)			•	•					0.633
	fgenesh2_kg.6__2705__AT5G27560.1	annotation not avaliable (340 aa)			•	•					0.624
	fgenesh2_kg.5__435__AT3G26710.1	annotation not avaliable (267 aa)			•	•					0.622
	fgenesh2_kg.5__2683__AT3G61870.1	annotation not avaliable (271 aa)			•	•					0.621

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	335
pfam06485	270	pfam06485, DUF1092, Protein of unknown function (D	2e-91

>gnl|CDD|219056 pfam06485, DUF1092, Protein of unknown function (DUF1092)

 Score =  273 bits (701), Expect = 2e-91
 Identities = 109/273 (39%), Positives = 147/273 (53%), Gaps = 47/273 (17%)

Query: 101 WELDFCSRPILDIRGKKIWELVVCDGSLS-LQYTKYFPNNVINSITLKEAIVAICDDLGV 159
           WELDF SRPILD  GKK WEL++CD   S  +Y K+ P + +NS+ L  A+     + G 
Sbjct: 1   WELDFYSRPILDEDGKKRWELLICDTPRSPFRYAKFCPASEVNSVWLARALEEAIAE-GW 59

Query: 160 PIPEKIRFFRSQMQTIITKACKELDIKPIPSKRCLSLLLWLEERYETVYTRHPGFQKGSK 219
             P++IRFFRSQM T+I +AC+EL I+  PS+R  +L  WLEER E VY + PG+   + 
Sbjct: 60  EKPDRIRFFRSQMLTMIQRACEELGIEVEPSRRTYALKDWLEEREEEVYPQEPGYMALAP 119

Query: 220 PLLALDNPFPMELPDNLFGDKWAFVQLPF------------------------------- 248
           P +ALD P P  LP+ L GD WAF  LP                                
Sbjct: 120 PPVALDKPPPQPLPEALRGDAWAFASLPAGDLREAFEWPIPFGELFPLPLGLADDTPIPG 179

Query: 249 ------------SAWMNGLEVCSIETDTARGSLILSVGISTRYIYANYKKNPVTTSEAEA 296
                       +AW++GLE  S+  D     LIL  G+  R++ A+  ++P    EA+A
Sbjct: 180 LRIFSGRRALALAAWLSGLEPVSLSVDGGDQ-LILEAGLDDRWLVADL-EDPEAKQEAKA 237

Query: 297 WEAAKKACGGLHFLAIQEELDSEDCVGFWLLLD 329
           +E AK+   GLHFLA+Q + +SE   GFWLL D
Sbjct: 238 FEEAKQQAQGLHFLAVQPDPESETFAGFWLLRD 270

This family consists of several hypothetical proteins of unknown function all from photosynthetic organisms including plants and cyanobacteria. Length = 270

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	335
PF06485	270	DUF1092: Protein of unknown function (DUF1092); In	100.0
PF00665	120	rve: Integrase core domain; InterPro: IPR001584 In	96.8

>PF06485 DUF1092: Protein of unknown function (DUF1092); InterPro: IPR009472 This family consists of several hypothetical proteins of unknown function all from photosynthetic organisms including plants and cyanobacteria

Probab=100.00  E-value=2.7e-107  Score=764.64  Aligned_cols=227  Identities=52%  Similarity=0.930  Sum_probs=223.4

Q ss_pred             eecccccCccccCCCceeEEEEEeeCCCceEEEecCCCCCCCHHHHHHHHHHHHhhcCCCCCCeeeeehHHHHHHHHHHh
Q 019808          101 WELDFCSRPILDIRGKKIWELVVCDGSLSLQYTKYFPNNVINSITLKEAIVAICDDLGVPIPEKIRFFRSQMQTIITKAC  180 (335)
Q Consensus       101 WELDFYSRPilD~~GKKlWELLICd~~~~F~y~~~CP~s~VNS~WL~~aL~~ai~~a~~~~P~~IRfFR~QM~nmI~kAc  180 (335)
                      ||||||||||+|++|||+|||||||++++|+|+++||||+|||+||++||++|+++ |+.+|++|||||+||+|||++||
T Consensus         1 WElDFYsRPi~d~~gkk~WELLIcd~~~~f~~~~~cP~~~vNS~wL~~al~~a~~~-~~~~P~~Ir~FR~qm~~mI~~A~   79 (270)
T PF06485_consen    1 WELDFYSRPILDENGKKLWELLICDSPGSFRYAKFCPNSEVNSIWLRQALEEAIDQ-GGEKPDRIRFFRSQMLNMITKAC   79 (270)
T ss_pred             CccccccCcccCCCCCeeEEEEEEcCCCCEEEEEeCCCCccCHHHHHHHHHHHHHh-cCCCCcEEEEEhHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999 78999999999999999999999


Q ss_pred             hhCCCccccccchHHHHHHHHHHHhhhccCCCCCCCCCCCCCCCCCCCCCCCCcccCCCeeEEEeeccc-----------
Q 019808          181 KELDIKPIPSKRCLSLLLWLEERYETVYTRHPGFQKGSKPLLALDNPFPMELPDNLFGDKWAFVQLPFS-----------  249 (335)
Q Consensus       181 ~~LgI~v~PSRRT~aL~~WL~ER~e~VYp~~pGY~~~~~~p~~~~~~~P~pLPdaL~Ge~WaFvsLpa~-----------  249 (335)
                      ++|||+++||||||||++||+||+++|||+|+||++++++++++++++|+|||||||||+|+||+||++           
T Consensus        80 ~~lgI~~~pSRRt~aL~~wL~eR~~~vYp~~~gy~~~~~~~~~~~~~~P~pLPdaL~Ge~W~FvsLp~~~l~e~~e~~i~  159 (270)
T PF06485_consen   80 EELGIPVEPSRRTYALKQWLEEREEEVYPQEPGYQPGAPPPVALDPPPPQPLPDALRGEKWAFVSLPAGDLREAFEWPIP  159 (270)
T ss_pred             HHCCCceeecccHHHHHHHHHHHHHHhCcCCCCCCCCCCCccccCCCCCCCCChhhCCCceEEEEccHHHHHhhhccCcc
Confidence            999999999999999999999999999999999999999999999999999999999999999999999           


Q ss_pred             --------------------------------cccCCcceEEEEEecCCCeEEEeccCCCeEEEEEecCCcchhHHHHHH
Q 019808          250 --------------------------------AWMNGLEVCSIETDTARGSLILSVGISTRYIYANYKKNPVTTSEAEAW  297 (335)
Q Consensus       250 --------------------------------~WlsGlEp~~L~~d~~~~~LILEtGl~DrWilAt~~d~~~~~~eA~~f  297 (335)
                                                      +||+|+|||+|+||.+..+||||||++||||||||+ ++++.+||++|
T Consensus       160 fg~l~Pl~~~l~~~~~IPGv~I~s~~Ral~LA~Wl~glEp~~L~~~~~~~~LiLEaGl~drWi~a~~~-d~~~~~ea~~f  238 (270)
T PF06485_consen  160 FGELLPLPLGLASDTPIPGVVIFSGRRALPLAAWLSGLEPVSLNYDPGEPGLILEAGLDDRWILATLE-DPEAAAEAQAF  238 (270)
T ss_pred             ccccCCCCCCCCcCCccceEEEecCcchhHHHHHhccCceEEEEEecCCceEEEecCCcceEEEEeCC-CHHHHHHHHHH
Confidence                                            999999999999998866999999999999999999 49999999999


Q ss_pred             HHHHHHcCCcEEEEEecCCCCCceeeEEeecC
Q 019808          298 EAAKKACGGLHFLAIQEELDSEDCVGFWLLLD  329 (335)
Q Consensus       298 E~aKq~a~GLHFLaVQ~dp~~etfaGFWLL~d  329 (335)
                      |++|++|+|||||||||||++++|+|||||||
T Consensus       239 e~~K~~a~GlHFLaVQ~d~~~~t~~GFWLL~~  270 (270)
T PF06485_consen  239 EQAKQAAQGLHFLAVQPDPSSETFAGFWLLQD  270 (270)
T ss_pred             HHHHHHcCCceEEEEecCCCCCceeeEEEecC
Confidence            99999999999999999999999999999996

>PF00665 rve: Integrase core domain; InterPro: IPR001584 Integrase comprises three domains capable of folding independently and whose three-dimensional structures are known

Probab=96.80  E-value=0.007  Score=47.72  Aligned_cols=92  Identities=24%  Similarity=0.338  Sum_probs=71.5

Q ss_pred             eeeecccccCccccCCCceeEEEEEeeCCCceEEEecCCCCCCCHHHHHHHHHHHHhhcCCCCCCeeeeehHHHHH--HH
Q 019808           99 TEWELDFCSRPILDIRGKKIWELVVCDGSLSLQYTKYFPNNVINSITLKEAIVAICDDLGVPIPEKIRFFRSQMQT--II  176 (335)
Q Consensus        99 ~iWELDFYSRPilD~~GKKlWELLICd~~~~F~y~~~CP~s~VNS~WL~~aL~~ai~~a~~~~P~~IRfFR~QM~n--mI  176 (335)
                      ..|++|++.-++.+ .|++.|=++++|.-+.+.+...++.. -++..+...|..++...|+..|..|+.=+..-++  .+
T Consensus         7 ~~~~~D~~~~~~~~-~~~~~~~~~~iD~~S~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~p~~i~tD~g~~f~~~~~   84 (120)
T PF00665_consen    7 ERWQIDFTPMPIPD-KGGRVYLLVFIDDYSRFIYAFPVSSK-ETAEAALRALKRAIEKRGGRPPRVIRTDNGSEFTSHAF   84 (120)
T ss_dssp             TEEEEEEEEETGGC-TT-CEEEEEEEETTTTEEEEEEESSS-SHHHHHHHHHHHHHHHHS-SE-SEEEEESCHHHHSHHH
T ss_pred             CEEEEeeEEEecCC-CCccEEEEEEEECCCCcEEEEEeecc-cccccccccccccccccccccceecccccccccccchh
Confidence            48999999444444 44489999999998999999999988 6777889999999987653339999987766555  88


Q ss_pred             HHHhhhCCCccccccc
Q 019808          177 TKACKELDIKPIPSKR  192 (335)
Q Consensus       177 ~kAc~~LgI~v~PSRR  192 (335)
                      +..|+++||.+..++.
T Consensus        85 ~~~~~~~~i~~~~~~~  100 (120)
T PF00665_consen   85 EAWCKHLGIKHVFTPP  100 (120)
T ss_dssp             HHHHHHHT-EEEESST
T ss_pred             hhHHHHcCceEeeCCC
Confidence            9999999999988774

However, the manner in which the N-terminal, catalytic, and C-terminal domains interact in the holoenzyme remains obscure. Numerous studies indicate that the enzyme functions as a multimer, minimally a dimer. The integrase proteins from Human immunodeficiency virus 1 (HIV-1) and Avian sarcoma virus (ASV) have been studied most carefully with respect to the structural basis of catalysis. Although the active site of ASV integrase does not undergo significant conformational changes on binding the required metal cofactor, that of HIV-1 does. This active site-mediated conformational change in HIV-1 reorganises the catalytic core and C-terminal domains and appears to promote an interaction that is favourable for catalysis []. Retroviral integrase is synthesised as part of the POL polyprotein that contains; an aspartyl protease, a reverse transcriptase, RNase H and integrase. POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. The presence of retrovirus integrase-related gene sequences in eukaryotes is known. Bacterial transposases involved in the transposition of the insertion sequence also belong to this group. HIV integrase catalyses the incorporation of virally derived DNA into the human genome. This unique step in the virus life cycle provides a variety of points for intervention and hence is an attractive target for the development of new therapeutics for the treatment of AIDS []. Substrate recognition by the retroviral integrase enzyme is critical for retroviral integration. To catalyse this recombination event, integrase must recognise and act on two types of substrates, viral DNA and host DNA, yet the necessary interactions exhibit markedly different degrees of specificity [].; GO: 0015074 DNA integration; PDB: 3AO3_A 3OVN_A 3AO5_A 3AO4_A 3AO1_A 1C6V_D 3HPG_A 3HPH_A 3OYD_A 3OYF_B ....

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	335
3kks_A	152	Integrase, IN; beta-strands flanked by alpha-helic	92.75
2x78_A	200	Integrase; viral protein, DNA-directed DNA polyme	91.36
1cxq_A	162	Avian sarcoma virus integrase; mixed beta-sheet su	90.29
1c0m_A	238	Protein (integrase); HIV, X-RAY crystallography, p	89.64
3hph_A	219	Integrase, IN; protein-protein complex, tetramer,	81.17
1bco_A	327	MUA domain II, bacteriophage MU transposase; polyn	81.06

>3kks_A Integrase, IN; beta-strands flanked by alpha-helices, DNA binding protein; 2.20A {Bovine immunodeficiency virus} PDB: 3kkr_A

Probab=92.75  E-value=0.69  Score=36.02  Aligned_cols=81  Identities=15%  Similarity=0.164  Sum_probs=61.3

Q ss_pred             eeeecccccCccccCCCceeEEEEEeeCCCceEEEecCCCCCCCHHHHHHHHHHHHhhcCCCCCCeeeeehHHHH--HHH
Q 019808           99 TEWELDFCSRPILDIRGKKIWELVVCDGSLSLQYTKYFPNNVINSITLKEAIVAICDDLGVPIPEKIRFFRSQMQ--TII  176 (335)
Q Consensus        99 ~iWELDFYSRPilD~~GKKlWELLICd~~~~F~y~~~CP~s~VNS~WL~~aL~~ai~~a~~~~P~~IRfFR~QM~--nmI  176 (335)
                      .+||+||-.-      |+ .|=++|.|.-..+.+...++  ..++..+..+|..++...|   |..|+.=|..-+  ..+
T Consensus         3 ~~w~~D~t~~------~~-~y~~~~iD~~sr~~~~~~~~--~~~~~~~~~~l~~~~~~~g---p~~i~sDnG~~f~s~~~   70 (152)
T 3kks_A            3 HLWQMDNTHW------NK-TIIWVAVETNSGLVEAQVIP--EETALQVALCILQLIQRYT---VLHLHSDNGPCFTAHRI   70 (152)
T ss_dssp             CEEEEEEEEE------TT-EEEEEEEETTTCCEEEEEES--SSCHHHHHHHHHHHHHHSC---CSEEEECSCHHHHSHHH
T ss_pred             cEEEEeeeee------CC-EEEEEEEEcCCCcEEEEEeC--CcCHHHHHHHHHHHHHHhC---CcEEecCCchHhhHHHH
Confidence            4899999643      44 48888888877777887776  5678899999999999843   999987553322  357


Q ss_pred             HHHhhhCCCcccccc
Q 019808          177 TKACKELDIKPIPSK  191 (335)
Q Consensus       177 ~kAc~~LgI~v~PSR  191 (335)
                      ...|+.+||...-++
T Consensus        71 ~~~~~~~gi~~~~~~   85 (152)
T 3kks_A           71 ENLCKYLGITKTTGI   85 (152)
T ss_dssp             HHHHHHTTCEEEESS
T ss_pred             HHHHHHcCCeecccC
Confidence            888999999887664

>2x78_A Integrase; viral protein, DNA-directed DNA polyme nucleotidyltransferase, DNA integration, aspartyl protease, recombination, transferase; 2.00A {Human spumaretrovirus} PDB: 2x6n_A 2x6s_A 2x74_A 3dlr_A

Probab=91.36  E-value=0.69  Score=38.30  Aligned_cols=87  Identities=17%  Similarity=0.210  Sum_probs=62.5

Q ss_pred             ceeeecccccCccccCCCceeEEEEEeeCCCceEEEecCCCCCCCHHHHHHHHHHHHhhcCCCCCCeeeeehHHHH--HH
Q 019808           98 ITEWELDFCSRPILDIRGKKIWELVVCDGSLSLQYTKYFPNNVINSITLKEAIVAICDDLGVPIPEKIRFFRSQMQ--TI  175 (335)
Q Consensus        98 m~iWELDFYSRPilD~~GKKlWELLICd~~~~F~y~~~CP~s~VNS~WL~~aL~~ai~~a~~~~P~~IRfFR~QM~--nm  175 (335)
                      ...|++||.. |+...+| +.|=++|.|.-..+.+...+.  .-++..+.++|+.++..   ..|..|+.=|..-+  ..
T Consensus        13 ~~~~~~D~~~-~~~~~~g-~~y~~~~iD~~Sr~~~~~~~~--~~~~~~~~~~l~~~~~~---g~p~~i~sDnG~~f~s~~   85 (200)
T 2x78_A           13 FDKFFIDYIG-PLPPSQG-YLYVLVVVDGMTGFTWLYPTK--APSTSATVKSLNVLTSI---AIPRVIHSDQGAAFTSST   85 (200)
T ss_dssp             TSEEEEEEEC-CCSCBTT-BCEEEEEEETTTCCEEEEEES--SSCHHHHHHHHHHHTTT---CCCSEEEECSCHHHHSHH
T ss_pred             ccEEEEEEeC-CCccCCC-CeEEEEEEeCCCCcEEEEECC--CCCHHHHHHHHHHHHHh---CCCcEEEecCCcceehHH
Confidence            4689999953 3333456 678888888877777877774  45667778889877765   45888887654322  34


Q ss_pred             HHHHhhhCCCcccccc
Q 019808          176 ITKACKELDIKPIPSK  191 (335)
Q Consensus       176 I~kAc~~LgI~v~PSR  191 (335)
                      +...|+.+||...-++
T Consensus        86 ~~~~~~~~gi~~~~~~  101 (200)
T 2x78_A           86 FAEWAKERGIHLEFST  101 (200)
T ss_dssp             HHHHHHHHTCEEEECC
T ss_pred             HHHHHHHcCceEeECC
Confidence            7888999999987765

>1cxq_A Avian sarcoma virus integrase; mixed beta-sheet surrounded by alpha-helices, transferase; HET: EPE; 1.02A {Avian sarcoma virus} SCOP: c.55.3.2 PDB: 1cxu_A* 1czb_A* 1cz9_A* 1asu_A* 1asw_A* 1asv_A 1a5v_A* 1a5w_A* 1a5x_A* 1vsf_A* 1vse_A* 3o4n_A* 1vsm_A 3o4q_A* 1vsd_A* 1vsh_A* 1vsi_A* 1vsj_A* 1vsk_A 1vsl_A

Probab=90.29  E-value=1.1  Score=36.23  Aligned_cols=86  Identities=16%  Similarity=0.205  Sum_probs=63.4

Q ss_pred             eeeecccccCccccCCCceeEEEEEeeCCCceEEEecCCCCCCCHHHHHHHHHHHHhhcCCCCCCeeeeehHH-HH-HHH
Q 019808           99 TEWELDFCSRPILDIRGKKIWELVVCDGSLSLQYTKYFPNNVINSITLKEAIVAICDDLGVPIPEKIRFFRSQ-MQ-TII  176 (335)
Q Consensus        99 ~iWELDFYSRPilD~~GKKlWELLICd~~~~F~y~~~CP~s~VNS~WL~~aL~~ai~~a~~~~P~~IRfFR~Q-M~-nmI  176 (335)
                      ..|++||-.-+.  .+|+ .|=++|.|.-..+.+.-.+.  ..++..+.++|+.++...|  .|..|+.=|.. .. ..+
T Consensus        12 ~~~~~D~~~~~~--~~g~-~yl~~~iD~~Sr~i~~~~~~--~~~~~~v~~~l~~~~~~~g--~p~~i~sDnG~~f~s~~~   84 (162)
T 1cxq_A           12 QIWQTDFTLEPR--MAPR-SWLAVTVDTASSAIVVTQHG--RVTSVAAQHHWATAIAVLG--RPKAIKTDNGSCFTSKST   84 (162)
T ss_dssp             CEEEEEEEECGG--GTTS-CEEEEEEETTTCCEEEEEES--SCCHHHHHHHHHHHHHHHC--CCSEEECCSCHHHHSHHH
T ss_pred             CEEEeeeeeccc--CCCC-EEEEEEEEcCCCeEEEEECC--CccHHHHHHHHHHHHHHHC--CCeEEEeCCchhhhhHHH
Confidence            589999986444  3454 77788888766677776666  5888999999999999854  48888764432 21 346


Q ss_pred             HHHhhhCCCcccccc
Q 019808          177 TKACKELDIKPIPSK  191 (335)
Q Consensus       177 ~kAc~~LgI~v~PSR  191 (335)
                      ...|+++||...-|+
T Consensus        85 ~~~~~~~gi~~~~~~   99 (162)
T 1cxq_A           85 REWLARWGIAHTTGI   99 (162)
T ss_dssp             HHHHHHHTCEEECCC
T ss_pred             HHHHHHCCCeEeeCC
Confidence            788999999887665

>1c0m_A Protein (integrase); HIV, X-RAY crystallography, protein structure, transferase; 2.53A {Rous sarcoma virus} SCOP: b.34.7.1 c.55.3.2 PDB: 1c1a_A

Probab=89.64  E-value=1.2  Score=38.86  Aligned_cols=87  Identities=16%  Similarity=0.205  Sum_probs=65.9

Q ss_pred             ceeeecccccCccccCCCceeEEEEEeeCCCceEEEecCCCCCCCHHHHHHHHHHHHhhcCCCCCCeeeeehHHHH--HH
Q 019808           98 ITEWELDFCSRPILDIRGKKIWELVVCDGSLSLQYTKYFPNNVINSITLKEAIVAICDDLGVPIPEKIRFFRSQMQ--TI  175 (335)
Q Consensus        98 m~iWELDFYSRPilD~~GKKlWELLICd~~~~F~y~~~CP~s~VNS~WL~~aL~~ai~~a~~~~P~~IRfFR~QM~--nm  175 (335)
                      ...|++||-.-+.  .+| +.|=++|.|.-+.+.+...+.  ..++..+.++|+.++...|  .|..|+.=+..-.  ..
T Consensus        10 ~~~w~~D~~~~~~--~~g-~~yl~~~iD~~Sr~i~~~~~~--~~~~~~v~~~l~~~~~~~g--~p~~i~sDnG~~f~s~~   82 (238)
T 1c0m_A           10 LQIWQTDFTLEPR--MAP-RSWLAVTVDTASSAIVVTQHG--RVTSVAVQHHWATAIAVLG--RPKAIKTDNGSCFTSKS   82 (238)
T ss_dssp             TSEEEEEEEECGG--GCS-SCEEEEEEETTTCCEEEEEES--SCCHHHHHHHHHHHHHHHC--CCSEEEECSCHHHHSHH
T ss_pred             CCEEEEeeccccc--cCC-CEEEEEEEECCCCCEEEEEcc--CCCHHHHHHHHHHHHHHhC--CCcEEEECCCCccccHH
Confidence            3689999985443  234 588899999877788877776  6899999999999999864  4888887554322  34


Q ss_pred             HHHHhhhCCCcccccc
Q 019808          176 ITKACKELDIKPIPSK  191 (335)
Q Consensus       176 I~kAc~~LgI~v~PSR  191 (335)
                      +...|+++||...-++
T Consensus        83 ~~~~~~~~gI~~~~~~   98 (238)
T 1c0m_A           83 TREWLARWGIAHTTGI   98 (238)
T ss_dssp             HHHHHHHHTCEEEECC
T ss_pred             HHHHHHHCCCEEEecC
Confidence            6788999999876554

>3hph_A Integrase, IN; protein-protein complex, tetramer, DNA integration, endonucl magnesium, metal-binding, multifunctional enzyme; 2.64A {Maedi visna virus} PDB: 3hpg_A

Probab=81.17  E-value=7.4  Score=32.75  Aligned_cols=81  Identities=14%  Similarity=0.160  Sum_probs=59.3

Q ss_pred             eeeecccccCccccCCCceeEEEEEeeCCCceEEEecCCCCCCCHHHHHHHHHHHHhhcCCCCCCeeeeehHHHH--HHH
Q 019808           99 TEWELDFCSRPILDIRGKKIWELVVCDGSLSLQYTKYFPNNVINSITLKEAIVAICDDLGVPIPEKIRFFRSQMQ--TII  176 (335)
Q Consensus        99 ~iWELDFYSRPilD~~GKKlWELLICd~~~~F~y~~~CP~s~VNS~WL~~aL~~ai~~a~~~~P~~IRfFR~QM~--nmI  176 (335)
                      ..|++||-.      .|++ +=|+|.|.-+.+.+...+++  .++..+..+|..++...|   |..|..=|..-+  ..+
T Consensus        61 ~~w~~D~t~------~~~~-y~~~~iD~~Sr~~~~~~~~~--~~~~~~~~~l~~~~~~~g---p~~i~sDnG~~F~s~~~  128 (219)
T 3hph_A           61 DHWQVDYTH------YEDK-IILVWVETNSGLIYAERVKG--ETGQEFRVQTMKWYAMFA---PKSLQSDNGPAFVAEST  128 (219)
T ss_dssp             CEEEEEEEE------ETTE-EEEEEEETTTCCEEEEEESC--CCHHHHHHHHHHHHHHHC---CCEEEECCCHHHHSHHH
T ss_pred             ceEEEEEec------CCCE-EEEEEEeCCCCcEEEEEeCC--CCHHHHHHHHHHHHHHhC---CcEEEeCCCchhhhHHH
Confidence            689999952      2444 77888887666667776664  467888889998888853   889987554433  367


Q ss_pred             HHHhhhCCCcccccc
Q 019808          177 TKACKELDIKPIPSK  191 (335)
Q Consensus       177 ~kAc~~LgI~v~PSR  191 (335)
                      ...|+.+||...-|+
T Consensus       129 ~~~~~~~gi~~~~s~  143 (219)
T 3hph_A          129 QLLMKYLGIEHTTGI  143 (219)
T ss_dssp             HHHHHHHTCEEEESC
T ss_pred             HHHHHHcCCeEeECC
Confidence            889999999876654

>1bco_A MUA domain II, bacteriophage MU transposase; polynucleotidyl transferase, DNA binding, endonuclease, integrase; 2.40A {Enterobacteria phage MU} SCOP: b.48.1.1 c.55.3.3 PDB: 1bcm_A

Probab=81.06  E-value=1.5  Score=40.21  Aligned_cols=90  Identities=11%  Similarity=-0.031  Sum_probs=62.1

Q ss_pred             ceeeecccccCccc--cCCCc--eeEEEEEeeCCCceEE-EecCCCCCCCHHHHHHHHHHHHhhcCCCCCC--eeee---
Q 019808           98 ITEWELDFCSRPIL--DIRGK--KIWELVVCDGSLSLQY-TKYFPNNVINSITLKEAIVAICDDLGVPIPE--KIRF---  167 (335)
Q Consensus        98 m~iWELDFYSRPil--D~~GK--KlWELLICd~~~~F~y-~~~CP~s~VNS~WL~~aL~~ai~~a~~~~P~--~IRf---  167 (335)
                      ..+|+.|+..-++.  +.+|+  +.|=++|.|.-+.... -..+++  -|+.-+..+|..|+...|  .|.  .|..   
T Consensus        16 ~~~w~~D~t~~d~~~~~~~g~~~r~~l~~~iD~~SR~ivg~~~~~~--~~~~~v~~aL~~a~~~~G--~P~~~~i~sDnG   91 (327)
T 1bco_A           16 MQWINGDGYLHNVFVRWFNGDVIRPKTWFWQDVKTRKILGWRCDVS--ENIDSIRLSFMDVVTRYG--IPEDFHITIDNT   91 (327)
T ss_dssp             TTEEEEEEEECSBCEECTTSCEECCEEEEEEETTTCCEEEEEEESS--CCHHHHHHHHHHHHHHHC--EESSCEEECCCT
T ss_pred             CcEEEecCCEEEEEEECCCCccceeEEEEEEECCCCcEEEEEEECC--CCHHHHHHHHHHHHHhcC--CCCCcEEEeeCc
Confidence            47999998766654  44586  6788888887433333 334442  388889999999999854  587  6654   


Q ss_pred             --ehHHHH--------------HHHHHHhhhCCCcccccc
Q 019808          168 --FRSQMQ--------------TIITKACKELDIKPIPSK  191 (335)
Q Consensus       168 --FR~QM~--------------nmI~kAc~~LgI~v~PSR  191 (335)
                        |++...              .-+..+|.++||.+.-+|
T Consensus        92 ~~f~s~~~~g~~~~~~~~~~~~~~~~~~~~~lgI~~~~~~  131 (327)
T 1bco_A           92 RGAANKWLTGGAPNRYRFKVKEDDPKGLFLLMGAKMHWTS  131 (327)
T ss_dssp             TSTTTTTTSCCCTTTTBSCBCCCCHHHHHHHHTCEEECSS
T ss_pred             hhhccccccccccccccccccccchhhHHHhcCeEEEecC
Confidence              665543              123578999999987766

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	335
d1cxqa_	147	Retroviral integrase, catalytic domain {Rous sarco	92.42
d1exqa_	154	Retroviral integrase, catalytic domain {Human immu	85.7

>d1cxqa_ c.55.3.2 (A:) Retroviral integrase, catalytic domain {Rous sarcoma virus RSV [TaxId: 11886]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Ribonuclease H-like
family: Retroviral integrase, catalytic domain
domain: Retroviral integrase, catalytic domain
species: Rous sarcoma virus RSV [TaxId: 11886]

Probab=92.42  E-value=0.11  Score=40.10  Aligned_cols=86  Identities=16%  Similarity=0.198  Sum_probs=61.8

Q ss_pred             eeeecccccCccccCCCceeEEEEEeeCCCceEEEecCCCCCCCHHHHHHHHHHHHhhcCCCCCCeeeeehHH--HHHHH
Q 019808           99 TEWELDFCSRPILDIRGKKIWELVVCDGSLSLQYTKYFPNNVINSITLKEAIVAICDDLGVPIPEKIRFFRSQ--MQTII  176 (335)
Q Consensus        99 ~iWELDFYSRPilD~~GKKlWELLICd~~~~F~y~~~CP~s~VNS~WL~~aL~~ai~~a~~~~P~~IRfFR~Q--M~nmI  176 (335)
                      .+|++||-.-|.   .|.+.|=++|.|.-+.+.+.  +|.....+..+..+|..++...|  .|..|+.=+..  +..-+
T Consensus         8 ~~w~~D~~~~~~---~~~~~~l~v~vD~~Sr~i~~--~~~~~~t~~~~~~~l~~~~~~~g--~p~~i~sDnG~~F~s~~~   80 (147)
T d1cxqa_           8 QIWQTDFTLEPR---MAPRSWLAVTVDTASSAIVV--TQHGRVTSVAAQHHWATAIAVLG--RPKAIKTDNGSCFTSKST   80 (147)
T ss_dssp             CEEEEEEEECGG---GTTSCEEEEEEETTTCCEEE--EEESSCCHHHHHHHHHHHHHHHC--CCSEEECCSCHHHHSHHH
T ss_pred             CEEEEEEEEecC---CCCeEEEEEEEecccceecc--cccCccchHHHHHHHHHHHHHhC--CCeEEEecccccccchhh
Confidence            589999844332   24445777777765555554  55666889999999999999864  59999865532  23567


Q ss_pred             HHHhhhCCCcccccc
Q 019808          177 TKACKELDIKPIPSK  191 (335)
Q Consensus       177 ~kAc~~LgI~v~PSR  191 (335)
                      +..|+++||+...+.
T Consensus        81 ~~~~~~~gI~~~~~~   95 (147)
T d1cxqa_          81 REWLARWGIAHTTGI   95 (147)
T ss_dssp             HHHHHHHTCEEECCC
T ss_pred             hhhhhheeEEeeeec
Confidence            889999999987665

>d1exqa_ c.55.3.2 (A:) Retroviral integrase, catalytic domain {Human immunodeficiency virus type 1 [TaxId: 11676]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Ribonuclease H-like
family: Retroviral integrase, catalytic domain
domain: Retroviral integrase, catalytic domain
species: Human immunodeficiency virus type 1 [TaxId: 11676]

Probab=85.70  E-value=1.2  Score=34.57  Aligned_cols=93  Identities=15%  Similarity=0.105  Sum_probs=65.3

Q ss_pred             eeeecccccCccccCCCceeEEEEEeeCCCceEEEecCCCCCCCHHHHHHHHHHHHhhcCCCCCCeeeeehHHHH--HHH
Q 019808           99 TEWELDFCSRPILDIRGKKIWELVVCDGSLSLQYTKYFPNNVINSITLKEAIVAICDDLGVPIPEKIRFFRSQMQ--TII  176 (335)
Q Consensus        99 ~iWELDFYSRPilD~~GKKlWELLICd~~~~F~y~~~CP~s~VNS~WL~~aL~~ai~~a~~~~P~~IRfFR~QM~--nmI  176 (335)
                      -+||+||..-     +||-  =|++.|.-+.|-+...+++..  +.-.+..|..++.. ++  |..|+.=|..-+  ..+
T Consensus         4 g~W~~D~~~~-----~~k~--ilv~vD~~Sr~~~~~~~~~~~--~~~v~~~l~~~~~~-~~--p~~I~sDnG~eF~s~~~   71 (154)
T d1exqa_           4 GIWQLDCTHL-----EGKV--ILVAVHVASGYIEAEVIPAET--GQETAYFLLKLAGR-WP--VKTIHTDNGSNFTGATV   71 (154)
T ss_dssp             GEEEEEEEEE-----TTEE--EEEEEETTTTEEEEEEESSSS--HHHHHHHHHHHHHH-SC--CCEEECCCCGGGTSHHH
T ss_pred             CceeeEEEEE-----CCEE--EEEEEECcCCcEEEEEecCcc--hHHHHhhhhhheec-cC--CCEEEEcCCccccchhh
Confidence            4899999752     3553  356667777799998888865  55678888887766 43  888886554333  567


Q ss_pred             HHHhhhCCCccccc------------cchHHHHHHHHHH
Q 019808          177 TKACKELDIKPIPS------------KRCLSLLLWLEER  203 (335)
Q Consensus       177 ~kAc~~LgI~v~PS------------RRT~aL~~WL~ER  203 (335)
                      +.-|+++||+..-|            |..-.|++.|...
T Consensus        72 ~~~~~~~gi~~~~s~p~~Pq~nG~vEr~~r~l~~~lr~~  110 (154)
T d1exqa_          72 RAACDWAGIKQEDGIPYNPQSQGVVESMNKELKKIIGQV  110 (154)
T ss_dssp             HHHHHHHTCEECSCCCC-------CCSSHHHHHHHHHHH
T ss_pred             hhhhhhcccccccccCcccccccHHHHHHHHHHHhhhhh
Confidence            78899999987766            5555676666543