Citrus Sinensis ID: 019818
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 335 | 2.2.26 [Sep-21-2011] | |||||||
| Q9Y673 | 324 | Dolichyl-phosphate beta-g | yes | no | 0.832 | 0.861 | 0.456 | 5e-69 | |
| Q9DB25 | 324 | Dolichyl-phosphate beta-g | yes | no | 0.779 | 0.805 | 0.464 | 9e-68 | |
| Q54J42 | 327 | Dolichyl-phosphate beta-g | yes | no | 0.829 | 0.850 | 0.387 | 8e-61 | |
| P40350 | 334 | Dolichyl-phosphate beta-g | yes | no | 0.761 | 0.763 | 0.368 | 6e-42 | |
| O60061 | 322 | Dolichyl-phosphate beta-g | yes | no | 0.892 | 0.928 | 0.322 | 4e-40 | |
| D4GUA0 | 624 | Glycosyltransferase AglD | yes | no | 0.647 | 0.347 | 0.268 | 4e-16 | |
| B5XTK8 | 327 | Undecaprenyl-phosphate 4- | yes | no | 0.388 | 0.397 | 0.335 | 3e-11 | |
| A5GFZ5 | 259 | Dolichol-phosphate mannos | no | no | 0.641 | 0.830 | 0.223 | 5e-11 | |
| A6TF99 | 327 | Undecaprenyl-phosphate 4- | yes | no | 0.388 | 0.397 | 0.328 | 7e-11 | |
| Q58619 | 243 | Uncharacterized protein M | yes | no | 0.644 | 0.888 | 0.260 | 1e-10 |
| >sp|Q9Y673|ALG5_HUMAN Dolichyl-phosphate beta-glucosyltransferase OS=Homo sapiens GN=ALG5 PE=1 SV=1 | Back alignment and function desciption |
|---|
Score = 261 bits (667), Expect = 5e-69, Method: Compositional matrix adjust.
Identities = 136/298 (45%), Positives = 191/298 (64%), Gaps = 19/298 (6%)
Query: 37 HAHIEAPAIFEDPSSLKQVPCPSVTDPAEKYISLIIPAFNEEHRLPGALDETLNYLQQRA 96
H H E F + K+ PS+ D K +S+++P++NEE RLP +DE L+YL++R
Sbjct: 38 HRH-EEEKFFLNAKGQKET-LPSIWDSPTKQLSVVVPSYNEEKRLPVMMDEALSYLEKRQ 95
Query: 97 AKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNHGKGEAIRKGMLHSR 156
+D +FTYEV+++DDGS D T +VAF + +KY D VR+I L +N GKG AIR G+ SR
Sbjct: 96 KRDPAFTYEVIVVDDGSKDQTSKVAFKYCQKYGSDKVRVITLVKNRGKGGAIRMGIFSSR 155
Query: 157 GELLLMLDADGATKVTDLEKLESQIHAVGRKEYNHGDSVTVDSTFRISDIPIAAFGSRAH 216
GE +LM DADGATK D+EKLE ++ D + + IA GSRAH
Sbjct: 156 GEKILMADADGATKFPDVEKLEKGLN---------------DLQPWPNQMAIAC-GSRAH 199
Query: 217 LEEKALATRKWYRNFLMKGFHLVVILTAGPGIRDTQCGFKMFTRAAARKLFTNIRLKRWC 276
LE++++A R ++R LM GFH +V GIRDTQCGFK+FTR AA + F+++ ++RW
Sbjct: 200 LEKESIAQRSYFRTLLMYGFHFLVWFLCVKGIRDTQCGFKLFTREAASRTFSSLHVERWA 259
Query: 277 FDVELVYLCKRFGIPIIEISVNWSEIPGSKVNPL-SIPNMLWELALMSVGYRTGMWKV 333
FDVEL+Y+ + F IPI EI+VNW+EI GSK+ P S M +L + + Y TG W++
Sbjct: 260 FDVELLYIAQFFKIPIAEIAVNWTEIEGSKLVPFWSWLQMGKDLLFIRLRYLTGAWRL 317
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Homo sapiens (taxid: 9606) EC: 2EC: .EC: 4EC: .EC: 1EC: .EC: 1EC: 1EC: 7 |
| >sp|Q9DB25|ALG5_MOUSE Dolichyl-phosphate beta-glucosyltransferase OS=Mus musculus GN=Alg5 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 257 bits (656), Expect = 9e-68, Method: Compositional matrix adjust.
Identities = 129/278 (46%), Positives = 180/278 (64%), Gaps = 17/278 (6%)
Query: 58 PSVTDPAEKYISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGT 117
PS+ D K +S+++P++NEE RLP +DE LNYL++R D +FTYEV+++DDGS D T
Sbjct: 57 PSIWDSPTKQLSVVVPSYNEEKRLPVMMDEALNYLEKRQKHDCTFTYEVIVVDDGSEDQT 116
Query: 118 KRVAFDFVRKYTVDNVRIILLGRNHGKGEAIRKGMLHSRGELLLMLDADGATKVTDLEKL 177
+VA + +KY D VR+I L RN GKG A+R G+ SRGE +LM DADGATK D+EKL
Sbjct: 117 SKVALKYCQKYGSDKVRVITLVRNRGKGGAVRMGVFSSRGEKILMADADGATKFPDVEKL 176
Query: 178 ESQIHAVGRKEYNHGDSVTVDSTFRISDIPIAAFGSRAHLEEKALATRKWYRNFLMKGFH 237
E + D + IA GSRAHLE++++A R ++R FLM GFH
Sbjct: 177 EKGLS---------------DLQPWPEQMAIAC-GSRAHLEKESIAQRSYFRTFLMYGFH 220
Query: 238 LVVILTAGPGIRDTQCGFKMFTRAAARKLFTNIRLKRWCFDVELVYLCKRFGIPIIEISV 297
+V GIRDTQCGFK+ TR AA + F+++ ++RW FDVEL+Y+ + IPI E++V
Sbjct: 221 FLVWFLCVKGIRDTQCGFKLLTREAAARTFSSLHIERWAFDVELLYIAQCLQIPIAEVAV 280
Query: 298 NWSEIPGSKVNPL-SIPNMLWELALMSVGYRTGMWKVR 334
NW+EI GSK+ P S M +L + + Y TG W+++
Sbjct: 281 NWTEIEGSKLVPFWSWLQMGKDLLFIRLRYLTGAWRLK 318
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Mus musculus (taxid: 10090) EC: 2 EC: . EC: 4 EC: . EC: 1 EC: . EC: 1 EC: 1 EC: 7 |
| >sp|Q54J42|ALG5_DICDI Dolichyl-phosphate beta-glucosyltransferase OS=Dictyostelium discoideum GN=alg5 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 234 bits (597), Expect = 8e-61, Method: Compositional matrix adjust.
Identities = 117/302 (38%), Positives = 187/302 (61%), Gaps = 24/302 (7%)
Query: 40 IEAPAIFEDPSSLKQVPCPSVTD---PAEK-YISLIIPAFNEEHRLPGALDETLNYLQQR 95
+E ++ D +Q PS+ + P + Y+S+I+PA+NE+ RLP LD+ + +L ++
Sbjct: 44 LEKENVYIDVKEGEQHQFPSLVENKNPIDNIYLSVIVPAYNEQIRLPSMLDDAIKFLNEK 103
Query: 96 AAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNHGKGEAIRKGMLHS 155
+ KD F+YE++IIDDGS D T ++ ++ K N+R++ L +N GKG A+++G+L S
Sbjct: 104 SKKDLKFSYEIIIIDDGSKDSTAKLVTSYIEKQPSSNIRLLKLKQNRGKGGAVKRGILCS 163
Query: 156 RGELLLMLDADGATKVTDLEKLESQIHAVGRKEYNHGDSVTVDSTFRISDIPIAAFGSRA 215
RG+ LM+DADGAT+ D ++E +H + + +D+ I GSR+
Sbjct: 164 RGKYCLMVDADGATEFKDFNRVEDIMHKIEK-----------------NDLGIVC-GSRS 205
Query: 216 HLEEKAL-ATRKWYRNFLMKGFHLVVILTAGPGIRDTQCGFKMFTRAAARKLFTNIRLKR 274
HL + L A R + RN LM GFH+ V GI+DTQCGFK+FTR AR++F + ++R
Sbjct: 206 HLVDSDLVAKRSFLRNILMYGFHIFVQTLCVKGIKDTQCGFKLFTRETARRIFPTLHIER 265
Query: 275 WCFDVELVYLCKRFGIPIIEISVNWSEIPGSKVNPLSIP-NMLWELALMSVGYRTGMWKV 333
W FDVE++YL ++ IPI E++VNW+EI GSK++P S M ++ + Y G+WK+
Sbjct: 266 WAFDVEILYLAQKLNIPIAEVAVNWTEIDGSKLDPFSSSIQMAKDIVRIRFRYLLGIWKI 325
Query: 334 RT 335
++
Sbjct: 326 KS 327
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Dictyostelium discoideum (taxid: 44689) EC: 2 EC: . EC: 4 EC: . EC: 1 EC: . EC: 1 EC: 1 EC: 7 |
| >sp|P40350|ALG5_YEAST Dolichyl-phosphate beta-glucosyltransferase OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=ALG5 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 171 bits (434), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 102/277 (36%), Positives = 159/277 (57%), Gaps = 22/277 (7%)
Query: 62 DPAEKYISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVA 121
D E ++S++IP++NE R+ L + +++L+++ +E++I+DDGS+D T +
Sbjct: 69 DDEEIFLSVVIPSYNETGRILLMLTDAISFLKEKYGS----RWEIVIVDDGSTDNTTQYC 124
Query: 122 FDFVR---KYTVDNVRIILLGRNHGKGEAIRKGMLHSRGELLLMLDADGATKVTDLEKLE 178
+ K + RII +N GKG A+R+G LH RG+ L DADGA+K +D+EKL
Sbjct: 125 LKICKEQFKLNYEQFRIIKFSQNRGKGGAVRQGFLHIRGKYGLFADADGASKFSDVEKL- 183
Query: 179 SQIHAVGRKEYNHGDSVTVDSTFRISDIPIAAFGSRAHL-EEKALATRKWYRNFLMKGFH 237
I A+ + E + D T P A GSRAH+ +A+ R RN LM GFH
Sbjct: 184 --IDAISKIETSSTDLKTTK--------PAVAIGSRAHMVNTEAVIKRSMIRNCLMYGFH 233
Query: 238 LVVILTAGPGIRDTQCGFKMFTRAAARKLFTNIRLKRWCFDVELVYLCKRFGIPIIEISV 297
+V + I+DTQCGFK+F RAA K+F + + W FDVE++ L R I I EI +
Sbjct: 234 TLVFIFGIRSIKDTQCGFKLFNRAAILKIFPYLHTEGWIFDVEILILAIRKRIQIEEIPI 293
Query: 298 NWSEIPGSKVNPLSIPN--MLWELALMSVGYRTGMWK 332
+W E+ GSK+ L+I + M +L ++ + Y G+++
Sbjct: 294 SWHEVDGSKM-ALAIDSIKMAKDLVIIRMAYLLGIYR 329
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Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292) EC: 2 EC: . EC: 4 EC: . EC: 1 EC: . EC: 1 EC: 1 EC: 7 |
| >sp|O60061|ALG5_SCHPO Dolichyl-phosphate beta-glucosyltransferase OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=alg5 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 165 bits (418), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 108/335 (32%), Positives = 174/335 (51%), Gaps = 36/335 (10%)
Query: 13 VVVVIILFGLISAII--FEAYRRRDNHAHI-------EAPAIFEDPSSLKQVPCPSVTDP 63
+VV I+L+ ++ I F Y H+H E +F + K + +
Sbjct: 1 MVVYIVLYTCLAGFILLFLVYYYL-THSHCPRKQLEGEETCVFIENGQKKSLTLEKWSTS 59
Query: 64 AEKYISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSF---TYEVLIIDDGSSDGTKRV 120
I++I+PA+NE R+ L ET+++L++ S +E+LI+DD S D T
Sbjct: 60 DNIQITVIVPAYNESKRIGNMLQETVDHLEKYYRSSSSAGQRRWEILIVDDESKDTTVNA 119
Query: 121 AFDFVRKYTV-DNVRIILLGRNHGKGEAIRKGMLHSRGELLLMLDADGATKVTDLEKLES 179
+F K + D++R+ L RN GKG A+ GML++RG+ + DADGA++ +DLE L
Sbjct: 120 VLEFSNKLDLRDHLRVCSLKRNRGKGGAVTWGMLYARGQYAIFADADGASQFSDLELLFK 179
Query: 180 QIHAVGRKEYNHGDSVTVDSTFRISDIPIAAFGSRAHL-EEKALATRKWYRNFLMKGFHL 238
+ R G V GSRAH+ A+ R + RNFLM FH
Sbjct: 180 NMPPGPR-----GGVVV---------------GSRAHMVNTAAVVKRSFIRNFLMHCFHK 219
Query: 239 VVILTAGPGIRDTQCGFKMFTRAAARKLFTNIRLKRWCFDVELVYLCKRFGIPIIEISVN 298
++ + I DTQCGFK+F+R A + +F + ++ W FD+E++ L + FG+PIIE+ +
Sbjct: 220 LLQILGIREIGDTQCGFKLFSREAYQSIFPRMHVEGWIFDIEVLTLARFFGLPIIEVPIT 279
Query: 299 WSEIPGSKVNPLSIP-NMLWELALMSVGYRTGMWK 332
W E+ GSK+ L +M +L ++ + Y G+W+
Sbjct: 280 WHEVGGSKMTLLKDSISMAIDLLVIRLNYTFGIWE 314
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Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812) EC: 2 EC: . EC: 4 EC: . EC: 1 EC: . EC: 1 EC: 1 EC: 7 |
| >sp|D4GUA0|AGLD_HALVD Glycosyltransferase AglD OS=Haloferax volcanii (strain ATCC 29605 / DSM 3757 / JCM 8879 / NBRC 14742 / NCIMB 2012 / VKM B-1768 / DS2) GN=aglD PE=1 SV=1 | Back alignment and function description |
|---|
Score = 85.9 bits (211), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 69/257 (26%), Positives = 112/257 (43%), Gaps = 40/257 (15%)
Query: 58 PSVTDPAEKYISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGT 117
P+ A +S+++PA+NE + + T+ L+ D +EV++ +DG D T
Sbjct: 9 PAAATAAGVEVSVVLPAYNEARTIENTVRVTVETLESFLPAD---AFEVIVAEDGCDDET 65
Query: 118 KRVAF------DFVRKYTVDNVRIILLGRNHGKGEAIRKGMLHSRGELLLMLDADGATKV 171
+A D +R Y D+ G+G A+ + +RG+ L+ D D AT
Sbjct: 66 PEIADRLAAEDDRIRHYHSDD--------RLGRGGALERAFEAARGDTLVYFDTDLAT-- 115
Query: 172 TDLEKLESQIHAVGRKEYNHGDSVTVDSTFRISDIPIAAFGSRAHLEEKALATRKWYRNF 231
D+ LE + V EY+ AA GSR + A RK R
Sbjct: 116 -DMRHLEELVERVRSGEYD------------------AATGSRWMPDRVADRPRK--RGV 154
Query: 232 LMKGFHLVVILTAGPGIRDTQCGFKMFTRAAARKLFTNIRLKRWCFDVELVYLCKRFGIP 291
+ ++ +V L +RD QCGFK F+R A L ++ W +D E++ +R G
Sbjct: 155 PSRAYNGLVRLFLRSDLRDHQCGFKAFSREAFEALRDDVEDNHWFWDTEMLVRAQRAGFR 214
Query: 292 IIEISVNWSEIPGSKVN 308
+ E V+W +KV+
Sbjct: 215 VAEFPVDWEPKGDTKVD 231
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Involved in N-glycosylation of the S-layer glycoprotein. Contributes to the assembly of the pentasaccharide decorating at least 2 select Asn residues of the S-layer glycoprotein. Involved in the addition of the final hexose subunit to the pentasaccharide. Haloferax volcanii (strain ATCC 29605 / DSM 3757 / JCM 8879 / NBRC 14742 / NCIMB 2012 / VKM B-1768 / DS2) (taxid: 309800) EC: 2 EC: . EC: 4 EC: . EC: 1 EC: . EC: - |
| >sp|B5XTK8|ARNC_KLEP3 Undecaprenyl-phosphate 4-deoxy-4-formamido-L-arabinose transferase OS=Klebsiella pneumoniae (strain 342) GN=arnC PE=3 SV=1 | Back alignment and function description |
|---|
Score = 69.7 bits (169), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 47/140 (33%), Positives = 70/140 (50%), Gaps = 10/140 (7%)
Query: 60 VTDPAEKYISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKR 119
+T P K +S++IP +NE+ LP L T A YE+L+IDDGSSD + R
Sbjct: 2 LTYPPVKKVSVVIPVYNEQDSLPELLRRT-----DTACATLGRQYEILLIDDGSSDDSAR 56
Query: 120 VAFDFVRKYTVDNVRIILLGRNHGKGEAIRKGMLHSRGELLLMLDADGATKVTDL----E 175
+ + + +V +LL RN+G+ AI G H G+L++ LDAD ++ E
Sbjct: 57 MLTE-AAEAEGSHVVAVLLNRNYGQHSAIMAGFSHVTGDLIITLDADLQNPPEEIPRLVE 115
Query: 176 KLESQIHAVGRKEYNHGDSV 195
K + VG N DS+
Sbjct: 116 KADEGYDVVGTVRQNRQDSI 135
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Catalyzes the transfer of 4-deoxy-4-formamido-L-arabinose from UDP to undecaprenyl phosphate. The modified arabinose is attached to lipid A and is required for resistance to polymyxin and cationic antimicrobial peptides. Klebsiella pneumoniae (strain 342) (taxid: 507522) EC: 2 EC: . EC: 7 EC: . EC: 8 EC: . EC: 3 EC: 0 |
| >sp|A5GFZ5|DPM1_PIG Dolichol-phosphate mannosyltransferase OS=Sus scrofa GN=DPM1 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 68.9 bits (167), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 54/242 (22%), Positives = 103/242 (42%), Gaps = 27/242 (11%)
Query: 58 PSVTDPAEKYISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGT 117
P P + S+++P +NE LP + +L ++ + YE++IIDDGS DGT
Sbjct: 16 PEGRFPRQDKYSVLLPTYNERENLP-----LIVWLLVKSFSESGINYEIIIIDDGSPDGT 70
Query: 118 KRVAFDFVRKYTVDNVRIILLGRNHGKGEAIRKGMLHSRGELLLMLDADGATKVTDLEKL 177
+ +A V+ Y D + + + G G A GM H+ G ++++DA DL
Sbjct: 71 RDIAEQLVKIYGSDKILLRPREKKLGLGTAYIHGMKHATGNYIIIMDA-------DLSHH 123
Query: 178 ESQIHAVGRKEYNHGDSVTVDSTFRISDIPIAAFGSRAHLEEKALATRKWYRNFLMKGFH 237
I RK+ G+ V T + + + + R + +G +
Sbjct: 124 PKFIPEFIRKQ-KEGNFDIVSGTRYKGNGGVYGWDLK--------------RKIISRGAN 168
Query: 238 LVVILTAGPGIRDTQCGFKMFTRAAARKLFTNIRLKRWCFDVELVYLCKRFGIPIIEISV 297
+ + PG D F+++ + +KL K + F +E++ ++ I E+ +
Sbjct: 169 FITQILLRPGASDLTGSFRLYRKEVLQKLIEKCVSKGYVFQMEMIVRARQLNYTIGEVPI 228
Query: 298 NW 299
++
Sbjct: 229 SF 230
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Transfers mannose from GDP-mannose to dolichol monophosphate to form dolichol phosphate mannose (Dol-P-Man) which is the mannosyl donor in pathways leading to N-glycosylation, glycosyl phosphatidylinositol membrane anchoring, and O-mannosylation of proteins. Sus scrofa (taxid: 9823) EC: 2 EC: . EC: 4 EC: . EC: 1 EC: . EC: 8 EC: 3 |
| >sp|A6TF99|ARNC_KLEP7 Undecaprenyl-phosphate 4-deoxy-4-formamido-L-arabinose transferase OS=Klebsiella pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH 78578) GN=arnC PE=3 SV=1 | Back alignment and function description |
|---|
Score = 68.6 bits (166), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 46/140 (32%), Positives = 71/140 (50%), Gaps = 10/140 (7%)
Query: 60 VTDPAEKYISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKR 119
+T P K +S++IP +NE+ LP L T A YE+L+IDDGSSD + R
Sbjct: 2 LTYPPVKKVSVVIPVYNEQDSLPELLRRT-----DAACATLGRQYEILLIDDGSSDDSAR 56
Query: 120 VAFDFVRKYTVDNVRIILLGRNHGKGEAIRKGMLHSRGELLLMLDADGATKVTDLEKLES 179
+ + + +V +LL RN+G+ AI G H G+L++ LDAD ++ +L +
Sbjct: 57 MLTE-AAEAEGSHVVAVLLNRNYGQHSAIMAGFSHVTGDLIITLDADLQNPPEEIPRLVA 115
Query: 180 Q----IHAVGRKEYNHGDSV 195
+ VG N DS+
Sbjct: 116 KADEGYDVVGTVRQNRQDSI 135
|
Catalyzes the transfer of 4-deoxy-4-formamido-L-arabinose from UDP to undecaprenyl phosphate. The modified arabinose is attached to lipid A and is required for resistance to polymyxin and cationic antimicrobial peptides. Klebsiella pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH 78578) (taxid: 272620) EC: 2 EC: . EC: 7 EC: . EC: 8 EC: . EC: 3 EC: 0 |
| >sp|Q58619|Y1222_METJA Uncharacterized protein MJ1222 OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) GN=MJ1222 PE=4 SV=1 | Back alignment and function description |
|---|
Score = 67.8 bits (164), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 69/265 (26%), Positives = 122/265 (46%), Gaps = 49/265 (18%)
Query: 68 ISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRK 127
I +++PAFNEE + ETL L++ K+ ++++DDGS D T +A +K
Sbjct: 19 IFVVVPAFNEEK----MIGETLKNLKKEGYKN------IVVVDDGSMDKTSEIA----KK 64
Query: 128 YTVDNVRIILLGRNHGKGEAIRKGM---LHSRGELLLMLDADGATKVTDLEKLESQIHAV 184
V R IL N G G A+ G+ L + ++++ DADG D+EK+ +
Sbjct: 65 EGVIVCRHIL---NRGLGGALGTGIKCALLYKPKIIITFDADGQHHPKDVEKVVKPV--- 118
Query: 185 GRKEYNHGDSVTVDSTFRISDIPIAAFGSRA--HLEEKALATRKWYRNFLMKGFHLVVIL 242
F D+ A GSR E K + K NF G + + L
Sbjct: 119 ---------------LFEGYDM---AIGSRMMDKNELKNMPLVKRIGNF---GLNFITYL 157
Query: 243 TAGPGIRDTQCGFKMFTRAAARKLFTNIRLKRWCFDVELVYLCKRFGIPIIEISVN--WS 300
G + D+Q G + F+ AA+K+ +++ R+ E + L K+ G+ + E+ + ++
Sbjct: 158 MGGYFVTDSQSGLRAFSYEAAKKIIGDLKSDRYEVSSEFIILAKKHGLKLKEVPIKTIYT 217
Query: 301 EIPGSK-VNPLSIPNMLWELALMSV 324
E S+ N ++ +L++L + +
Sbjct: 218 EYSMSRGTNVITGFKILFKLIMQKI 242
|
Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) (taxid: 243232) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 335 | ||||||
| 224100983 | 335 | predicted protein [Populus trichocarpa] | 0.994 | 0.994 | 0.825 | 1e-166 | |
| 225449525 | 336 | PREDICTED: dolichyl-phosphate beta-gluco | 1.0 | 0.997 | 0.821 | 1e-164 | |
| 224109522 | 335 | predicted protein [Populus trichocarpa] | 0.994 | 0.994 | 0.822 | 1e-164 | |
| 255580047 | 335 | Dolichyl-phosphate beta-glucosyltransfer | 0.994 | 0.994 | 0.801 | 1e-162 | |
| 356569014 | 333 | PREDICTED: dolichyl-phosphate beta-gluco | 0.982 | 0.987 | 0.792 | 1e-158 | |
| 356499640 | 333 | PREDICTED: dolichyl-phosphate beta-gluco | 0.982 | 0.987 | 0.792 | 1e-157 | |
| 449450171 | 329 | PREDICTED: dolichyl-phosphate beta-gluco | 0.916 | 0.933 | 0.798 | 1e-149 | |
| 297827567 | 336 | glycosyl transferase family 2 protein [A | 0.994 | 0.991 | 0.723 | 1e-148 | |
| 15225508 | 336 | dolichyl-phosphate beta-glucosyltransfer | 0.994 | 0.991 | 0.720 | 1e-148 | |
| 357503471 | 330 | Dolichyl-phosphate beta-glucosyltransfer | 0.973 | 0.987 | 0.765 | 1e-147 |
| >gi|224100983|ref|XP_002312095.1| predicted protein [Populus trichocarpa] gi|222851915|gb|EEE89462.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 589 bits (1518), Expect = e-166, Method: Compositional matrix adjust.
Identities = 275/333 (82%), Positives = 308/333 (92%)
Query: 1 MGFVCAIVEALLVVVVIILFGLISAIIFEAYRRRDNHAHIEAPAIFEDPSSLKQVPCPSV 60
MGF+ I E L+ +V II L++A++ EAYRRR N+ H++A A FEDP+SLKQVPCP +
Sbjct: 1 MGFLWTIAELLVALVFIIASFLLTAVVSEAYRRRHNNTHVDASAFFEDPNSLKQVPCPHI 60
Query: 61 TDPAEKYISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRV 120
DPAEKYISL+IPAFNEEHRLPGALDET+NYLQ+RAAKDKSFTYEV+I+DDGS+D TKRV
Sbjct: 61 HDPAEKYISLVIPAFNEEHRLPGALDETINYLQERAAKDKSFTYEVVIVDDGSADATKRV 120
Query: 121 AFDFVRKYTVDNVRIILLGRNHGKGEAIRKGMLHSRGELLLMLDADGATKVTDLEKLESQ 180
AFDFV+KYTVDNVR+ILLGRNHGKGEAIRKGMLHSRGELLLMLDADGATKVTDLEKLE+Q
Sbjct: 121 AFDFVKKYTVDNVRVILLGRNHGKGEAIRKGMLHSRGELLLMLDADGATKVTDLEKLENQ 180
Query: 181 IHAVGRKEYNHGDSVTVDSTFRISDIPIAAFGSRAHLEEKALATRKWYRNFLMKGFHLVV 240
IHAV RKE+ G+S + DS+FRISDIP+AAFGSRAHLEEKALATRKWYRNFLMKGFHLVV
Sbjct: 181 IHAVARKEFRLGESTSSDSSFRISDIPLAAFGSRAHLEEKALATRKWYRNFLMKGFHLVV 240
Query: 241 ILTAGPGIRDTQCGFKMFTRAAARKLFTNIRLKRWCFDVELVYLCKRFGIPIIEISVNWS 300
+LTAG GIRDTQCGFKMFTRAAARKLFTNIRLKRWCFDVELV+LCK FGIP+IEISVNW+
Sbjct: 241 LLTAGSGIRDTQCGFKMFTRAAARKLFTNIRLKRWCFDVELVFLCKWFGIPVIEISVNWT 300
Query: 301 EIPGSKVNPLSIPNMLWELALMSVGYRTGMWKV 333
EIPGSKVNPLSIPNMLWELAL+S+GYRT MWK+
Sbjct: 301 EIPGSKVNPLSIPNMLWELALVSMGYRTRMWKI 333
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225449525|ref|XP_002283615.1| PREDICTED: dolichyl-phosphate beta-glucosyltransferase [Vitis vinifera] gi|296086237|emb|CBI31678.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 585 bits (1507), Expect = e-164, Method: Compositional matrix adjust.
Identities = 276/336 (82%), Positives = 307/336 (91%), Gaps = 1/336 (0%)
Query: 1 MGFVCAIVEALLVVVVIILFGLISAIIFEAYRRRDNHAHIEA-PAIFEDPSSLKQVPCPS 59
MG++ I E L++ V GL AIIFE++RRR N+AH+E+ A+FEDP+SLKQVPCP+
Sbjct: 1 MGWLWIITELLVIAVTFAALGLGFAIIFESFRRRHNNAHVESGNAVFEDPNSLKQVPCPN 60
Query: 60 VTDPAEKYISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKR 119
++DPAEKYISLIIPAFNEE RLPGALDET+NYLQQRAAKDKSF+YEV+I+DDGS+DGT R
Sbjct: 61 ISDPAEKYISLIIPAFNEELRLPGALDETMNYLQQRAAKDKSFSYEVVIVDDGSADGTNR 120
Query: 120 VAFDFVRKYTVDNVRIILLGRNHGKGEAIRKGMLHSRGELLLMLDADGATKVTDLEKLES 179
VAFDFV+KYT+DNVR+ILLGRN+GKGEAIR+GMLHSRGELLLMLDADGATKVTDLEKLE+
Sbjct: 121 VAFDFVKKYTIDNVRVILLGRNYGKGEAIRQGMLHSRGELLLMLDADGATKVTDLEKLEN 180
Query: 180 QIHAVGRKEYNHGDSVTVDSTFRISDIPIAAFGSRAHLEEKALATRKWYRNFLMKGFHLV 239
QIH V KE GDS T DS+ RISDIP+AAFGSRAHLEEKALATRKWYRNFLMKGFH+V
Sbjct: 181 QIHVVAMKEIQFGDSATGDSSLRISDIPLAAFGSRAHLEEKALATRKWYRNFLMKGFHVV 240
Query: 240 VILTAGPGIRDTQCGFKMFTRAAARKLFTNIRLKRWCFDVELVYLCKRFGIPIIEISVNW 299
V+LTAGPGIRDTQCGFKMFTRAAARKLFTNIRLKRWCFDVELVYLCK FGIP+IEISVNW
Sbjct: 241 VLLTAGPGIRDTQCGFKMFTRAAARKLFTNIRLKRWCFDVELVYLCKWFGIPMIEISVNW 300
Query: 300 SEIPGSKVNPLSIPNMLWELALMSVGYRTGMWKVRT 335
SEIPGSKVNPLSIPNMLWELALMS GYRTGMWK+ T
Sbjct: 301 SEIPGSKVNPLSIPNMLWELALMSAGYRTGMWKIST 336
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224109522|ref|XP_002315224.1| predicted protein [Populus trichocarpa] gi|222864264|gb|EEF01395.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 583 bits (1503), Expect = e-164, Method: Compositional matrix adjust.
Identities = 274/333 (82%), Positives = 306/333 (91%)
Query: 1 MGFVCAIVEALLVVVVIILFGLISAIIFEAYRRRDNHAHIEAPAIFEDPSSLKQVPCPSV 60
MG + I E L+ +++II L++AI+ EAYRRR N+ H++A AIFEDP+SLKQVPCP +
Sbjct: 1 MGLLWTIAEVLVALILIIASFLLTAIVSEAYRRRHNNTHVDAHAIFEDPNSLKQVPCPHI 60
Query: 61 TDPAEKYISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRV 120
DPAEKY+SL+IPAFNEE+RLPGALDET+NYLQQRAAKDKSFTYEV+I+DDGS+D TKRV
Sbjct: 61 HDPAEKYLSLVIPAFNEEYRLPGALDETINYLQQRAAKDKSFTYEVVIVDDGSADATKRV 120
Query: 121 AFDFVRKYTVDNVRIILLGRNHGKGEAIRKGMLHSRGELLLMLDADGATKVTDLEKLESQ 180
AFDFV+KYTVDNVRIILLGRNHGKGEAIRKGMLHSRGELLLMLDADGATKV DLEKLE+Q
Sbjct: 121 AFDFVKKYTVDNVRIILLGRNHGKGEAIRKGMLHSRGELLLMLDADGATKVADLEKLENQ 180
Query: 181 IHAVGRKEYNHGDSVTVDSTFRISDIPIAAFGSRAHLEEKALATRKWYRNFLMKGFHLVV 240
IHAV RKE+ G+S DS+FRISD+P+AAFGSRAHLEEKALATRKWYRNFLMKGFHLVV
Sbjct: 181 IHAVARKEFCLGESAASDSSFRISDMPLAAFGSRAHLEEKALATRKWYRNFLMKGFHLVV 240
Query: 241 ILTAGPGIRDTQCGFKMFTRAAARKLFTNIRLKRWCFDVELVYLCKRFGIPIIEISVNWS 300
+LTAG GIRDTQCGFKMFTRAAARKLFTNIRLKRWCFDVEL++LCK FGIP+IEISVNWS
Sbjct: 241 LLTAGSGIRDTQCGFKMFTRAAARKLFTNIRLKRWCFDVELIFLCKWFGIPMIEISVNWS 300
Query: 301 EIPGSKVNPLSIPNMLWELALMSVGYRTGMWKV 333
EIPGSKVN LSIPNMLWELALMSVGYRT MWK+
Sbjct: 301 EIPGSKVNLLSIPNMLWELALMSVGYRTRMWKI 333
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255580047|ref|XP_002530857.1| Dolichyl-phosphate beta-glucosyltransferase, putative [Ricinus communis] gi|223529581|gb|EEF31531.1| Dolichyl-phosphate beta-glucosyltransferase, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 576 bits (1484), Expect = e-162, Method: Compositional matrix adjust.
Identities = 267/333 (80%), Positives = 302/333 (90%)
Query: 1 MGFVCAIVEALLVVVVIILFGLISAIIFEAYRRRDNHAHIEAPAIFEDPSSLKQVPCPSV 60
MGF+ + E + ++V+I L++AIIFE+Y+RR N+ H+++ IFEDP+SL QVPCP +
Sbjct: 1 MGFLWTVAEVFVALIVVIASLLLTAIIFESYKRRHNNKHVDSHVIFEDPNSLNQVPCPYI 60
Query: 61 TDPAEKYISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRV 120
DPAEKYISLIIPAFNEE+RLPGALDET+NYLQQRAA DKSFTYEV+I+DDGSSD TKRV
Sbjct: 61 HDPAEKYISLIIPAFNEEYRLPGALDETMNYLQQRAANDKSFTYEVVIVDDGSSDATKRV 120
Query: 121 AFDFVRKYTVDNVRIILLGRNHGKGEAIRKGMLHSRGELLLMLDADGATKVTDLEKLESQ 180
AF FV+KY+VDNVR+ILLG+NHGKGEAIRKGMLHSRGELLLMLDADGATKV DLEKLE+Q
Sbjct: 121 AFGFVKKYSVDNVRVILLGKNHGKGEAIRKGMLHSRGELLLMLDADGATKVNDLEKLENQ 180
Query: 181 IHAVGRKEYNHGDSVTVDSTFRISDIPIAAFGSRAHLEEKALATRKWYRNFLMKGFHLVV 240
IHAV KE + GDS DS RISD+PIAAFGSRAHLEEKALATRKWYRNFLMKGFHLVV
Sbjct: 181 IHAVANKEIHLGDSAATDSIHRISDVPIAAFGSRAHLEEKALATRKWYRNFLMKGFHLVV 240
Query: 241 ILTAGPGIRDTQCGFKMFTRAAARKLFTNIRLKRWCFDVELVYLCKRFGIPIIEISVNWS 300
+L+AGPGIRDTQCGFKMFTRAAARKLFTNIRLKRWCFDVE+VYLCK F IP+IEISVNWS
Sbjct: 241 LLSAGPGIRDTQCGFKMFTRAAARKLFTNIRLKRWCFDVEVVYLCKWFSIPMIEISVNWS 300
Query: 301 EIPGSKVNPLSIPNMLWELALMSVGYRTGMWKV 333
EIPGSKVNPLSIPNMLWELA+MS+GYRTGMW++
Sbjct: 301 EIPGSKVNPLSIPNMLWELAIMSIGYRTGMWEI 333
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356569014|ref|XP_003552702.1| PREDICTED: dolichyl-phosphate beta-glucosyltransferase-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 565 bits (1456), Expect = e-158, Method: Compositional matrix adjust.
Identities = 264/333 (79%), Positives = 290/333 (87%), Gaps = 4/333 (1%)
Query: 1 MGFVCAIVEALLVVVVIILFGLISAIIFEAYRRRDNHAHIEAPAIFEDPSSLKQVPCPSV 60
M ++C V I L G + + FEAY+RR+NH HIE PAIFEDPSSLKQVPCP +
Sbjct: 1 MDYICLFV----TFTAIALLGFVFVVFFEAYKRRNNHQHIEVPAIFEDPSSLKQVPCPHI 56
Query: 61 TDPAEKYISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRV 120
DPA KYISLIIPAFNEEHRLPGAL+ET+NYL QR KD SFTYEV+IIDDGS+D TKRV
Sbjct: 57 VDPATKYISLIIPAFNEEHRLPGALEETMNYLHQRTLKDSSFTYEVVIIDDGSADETKRV 116
Query: 121 AFDFVRKYTVDNVRIILLGRNHGKGEAIRKGMLHSRGELLLMLDADGATKVTDLEKLESQ 180
AF+FVRKYTVD VR+ILLGRNHGKGEAIRKGM+HSRGELLLMLDADGATKVTDLEKLE+Q
Sbjct: 117 AFEFVRKYTVDKVRVILLGRNHGKGEAIRKGMMHSRGELLLMLDADGATKVTDLEKLENQ 176
Query: 181 IHAVGRKEYNHGDSVTVDSTFRISDIPIAAFGSRAHLEEKALATRKWYRNFLMKGFHLVV 240
I AV ++EY+HGDS D FRISD+P A FGSRAHLEEKALATRKWYRNFLMKGFHLVV
Sbjct: 177 IQAVAKREYHHGDSSDSDPRFRISDVPAAVFGSRAHLEEKALATRKWYRNFLMKGFHLVV 236
Query: 241 ILTAGPGIRDTQCGFKMFTRAAARKLFTNIRLKRWCFDVELVYLCKRFGIPIIEISVNWS 300
+L AGPGIRDTQCGFKMFTRAAARKLF+N+RLKRWCFDVELV+LCK F IP+ EISVNWS
Sbjct: 237 LLAAGPGIRDTQCGFKMFTRAAARKLFSNVRLKRWCFDVELVFLCKWFRIPVSEISVNWS 296
Query: 301 EIPGSKVNPLSIPNMLWELALMSVGYRTGMWKV 333
EIPGSKVN LSIPNMLWEL LMSVGYRTGMW++
Sbjct: 297 EIPGSKVNLLSIPNMLWELVLMSVGYRTGMWRI 329
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356499640|ref|XP_003518645.1| PREDICTED: dolichyl-phosphate beta-glucosyltransferase-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 561 bits (1446), Expect = e-157, Method: Compositional matrix adjust.
Identities = 264/333 (79%), Positives = 289/333 (86%), Gaps = 4/333 (1%)
Query: 1 MGFVCAIVEALLVVVVIILFGLISAIIFEAYRRRDNHAHIEAPAIFEDPSSLKQVPCPSV 60
M ++C V I L G +S + FEAY+RR+NH HIE PAIFEDPSSLKQVPCP +
Sbjct: 1 MDYICFFV----TFTAIALLGFVSVVFFEAYKRRNNHQHIEVPAIFEDPSSLKQVPCPHI 56
Query: 61 TDPAEKYISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRV 120
DPA KYISLIIPAFNEEHRLPGAL+ET+NYL QR KD SFTYEV+IIDDGS+D TKRV
Sbjct: 57 VDPATKYISLIIPAFNEEHRLPGALEETMNYLHQRTLKDSSFTYEVVIIDDGSADETKRV 116
Query: 121 AFDFVRKYTVDNVRIILLGRNHGKGEAIRKGMLHSRGELLLMLDADGATKVTDLEKLESQ 180
AF+FVRKYTVD VR+ILLGRNHGKGEAIRKGM+HSRGELLLMLDADGATKVTDLEKLE+Q
Sbjct: 117 AFEFVRKYTVDKVRVILLGRNHGKGEAIRKGMMHSRGELLLMLDADGATKVTDLEKLENQ 176
Query: 181 IHAVGRKEYNHGDSVTVDSTFRISDIPIAAFGSRAHLEEKALATRKWYRNFLMKGFHLVV 240
I AV ++EY+HGDS D FRISDIP A FGSRAHLEEKALATRKWYRNFLMKGFHLVV
Sbjct: 177 IQAVAKREYHHGDSSDSDPRFRISDIPAAVFGSRAHLEEKALATRKWYRNFLMKGFHLVV 236
Query: 241 ILTAGPGIRDTQCGFKMFTRAAARKLFTNIRLKRWCFDVELVYLCKRFGIPIIEISVNWS 300
++ AGPGI DTQCGFKMFTRAAARKLF+N+RLKRWCFDVELV+LCK F I I EISVNWS
Sbjct: 237 LMAAGPGICDTQCGFKMFTRAAARKLFSNVRLKRWCFDVELVFLCKWFRISISEISVNWS 296
Query: 301 EIPGSKVNPLSIPNMLWELALMSVGYRTGMWKV 333
EIPGSKVN LSIPNMLWEL LMSVGYRTGMW++
Sbjct: 297 EIPGSKVNLLSIPNMLWELVLMSVGYRTGMWRI 329
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449450171|ref|XP_004142837.1| PREDICTED: dolichyl-phosphate beta-glucosyltransferase-like [Cucumis sativus] gi|449483934|ref|XP_004156737.1| PREDICTED: dolichyl-phosphate beta-glucosyltransferase-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 535 bits (1379), Expect = e-149, Method: Compositional matrix adjust.
Identities = 250/313 (79%), Positives = 287/313 (91%), Gaps = 6/313 (1%)
Query: 21 GLISAIIFEAYRRRDNHAHIEAPAIFEDPSSLKQVPCPSVTDPAEKYISLIIPAFNEEHR 80
L+S +I EAY+RR N H+ APAIFEDP+SLK+VPCPS+ DPAEKY+SLI+PAFNEE+R
Sbjct: 21 ALLSTLIIEAYKRRFNREHLGAPAIFEDPNSLKRVPCPSIFDPAEKYMSLIVPAFNEEYR 80
Query: 81 LPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGR 140
L GAL+ET+NYLQQRAAKDKSF+YEV+IIDDGS+DGTK +AF+FVRKY+V+NVR+ILLGR
Sbjct: 81 LQGALEETINYLQQRAAKDKSFSYEVIIIDDGSADGTKGIAFNFVRKYSVENVRVILLGR 140
Query: 141 NHGKGEAIRKGMLHSRGELLLMLDADGATKVTDLEKLESQIHAVGRKEYNHGDSVTVDST 200
NHGKGEAIRKGMLHSRGE+LLMLDADGATK+TDLEKLE+QIHAV +KE + DS+
Sbjct: 141 NHGKGEAIRKGMLHSRGEILLMLDADGATKITDLEKLENQIHAVVKKE------TSRDSS 194
Query: 201 FRISDIPIAAFGSRAHLEEKALATRKWYRNFLMKGFHLVVILTAGPGIRDTQCGFKMFTR 260
R+SDIPI AFGSRAHLEEKALATRKWYRNFLMKGFHLVV+LTAGPGIRDTQCGFKMFTR
Sbjct: 195 VRVSDIPITAFGSRAHLEEKALATRKWYRNFLMKGFHLVVLLTAGPGIRDTQCGFKMFTR 254
Query: 261 AAARKLFTNIRLKRWCFDVELVYLCKRFGIPIIEISVNWSEIPGSKVNPLSIPNMLWELA 320
+AARKLF NIRLKRWCFDVELVYL K FGIP+IE+SVNWSEIPGSK++P SI NMLWELA
Sbjct: 255 SAARKLFINIRLKRWCFDVELVYLSKYFGIPMIEVSVNWSEIPGSKLSPQSILNMLWELA 314
Query: 321 LMSVGYRTGMWKV 333
LMS+GY+TG+WK+
Sbjct: 315 LMSIGYKTGLWKI 327
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297827567|ref|XP_002881666.1| glycosyl transferase family 2 protein [Arabidopsis lyrata subsp. lyrata] gi|297327505|gb|EFH57925.1| glycosyl transferase family 2 protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 531 bits (1368), Expect = e-148, Method: Compositional matrix adjust.
Identities = 241/333 (72%), Positives = 292/333 (87%)
Query: 1 MGFVCAIVEALLVVVVIILFGLISAIIFEAYRRRDNHAHIEAPAIFEDPSSLKQVPCPSV 60
M F+ + E L++++I+ FG +S ++FEA+RRR+++ +E EDP S+K +PCP +
Sbjct: 1 MEFLVTVAEFGLLLLLIVFFGFLSVVVFEAWRRRNSNVSVETVTTLEDPKSIKPIPCPHI 60
Query: 61 TDPAEKYISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRV 120
TDPAEKY+SLI+PA+NEE RLP AL+ET++YLQ RA++D SF++EV+I+DDGS DGTKRV
Sbjct: 61 TDPAEKYLSLIVPAYNEELRLPAALEETMDYLQDRASRDTSFSFEVVIVDDGSVDGTKRV 120
Query: 121 AFDFVRKYTVDNVRIILLGRNHGKGEAIRKGMLHSRGELLLMLDADGATKVTDLEKLESQ 180
AFDFVRK+TVDN+R+I LG+N GKGEAIRKGMLHSRG+LLLMLDADGATKVTDLEKLE+Q
Sbjct: 121 AFDFVRKHTVDNIRVIPLGKNQGKGEAIRKGMLHSRGQLLLMLDADGATKVTDLEKLENQ 180
Query: 181 IHAVGRKEYNHGDSVTVDSTFRISDIPIAAFGSRAHLEEKALATRKWYRNFLMKGFHLVV 240
I+AV R+EY+ + + D FRI D+ ++AFGSRAHLEEKALATRKWYRNFLMKGFHLVV
Sbjct: 181 INAVAREEYSIRNPASKDMDFRIGDVQVSAFGSRAHLEEKALATRKWYRNFLMKGFHLVV 240
Query: 241 ILTAGPGIRDTQCGFKMFTRAAARKLFTNIRLKRWCFDVELVYLCKRFGIPIIEISVNWS 300
+L AGPGIRDTQCGFKMFTRAAAR+LFTN+ LKRWCFDVELVYLCKRF IP++EISV WS
Sbjct: 241 LLAAGPGIRDTQCGFKMFTRAAARRLFTNVHLKRWCFDVELVYLCKRFNIPMVEISVKWS 300
Query: 301 EIPGSKVNPLSIPNMLWELALMSVGYRTGMWKV 333
EIPGSKV+ LSIPNMLWELALMSVGYRTGMWK+
Sbjct: 301 EIPGSKVSMLSIPNMLWELALMSVGYRTGMWKI 333
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15225508|ref|NP_181493.1| dolichyl-phosphate beta-glucosyltransferase [Arabidopsis thaliana] gi|15810211|gb|AAL07006.1| At2g39630/F12L6.29 [Arabidopsis thaliana] gi|18700244|gb|AAL77732.1| At2g39630/F12L6.29 [Arabidopsis thaliana] gi|20197112|gb|AAM14922.1| putative dolichyl-phosphate beta-glucosyltransferase [Arabidopsis thaliana] gi|330254605|gb|AEC09699.1| dolichyl-phosphate beta-glucosyltransferase [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 531 bits (1367), Expect = e-148, Method: Compositional matrix adjust.
Identities = 240/333 (72%), Positives = 292/333 (87%)
Query: 1 MGFVCAIVEALLVVVVIILFGLISAIIFEAYRRRDNHAHIEAPAIFEDPSSLKQVPCPSV 60
M F+ + E L +++I+LFG +S ++FEA+RRR ++ +E +DP S+K +PCP +
Sbjct: 1 MEFLVTVAEFSLWLLLIVLFGFLSVVVFEAWRRRHSNVSVETVTTLDDPKSIKPIPCPHI 60
Query: 61 TDPAEKYISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRV 120
TDPAEKY+SLI+PA+NEE RLP AL+ET++YLQ RA++DKSF++EV+I+DDGS DGTKRV
Sbjct: 61 TDPAEKYLSLIVPAYNEELRLPAALEETMDYLQDRASRDKSFSFEVVIVDDGSVDGTKRV 120
Query: 121 AFDFVRKYTVDNVRIILLGRNHGKGEAIRKGMLHSRGELLLMLDADGATKVTDLEKLESQ 180
AFDF+RKYT+DN+R+I LG+N GKGEAIRKGMLHSRG+LLLMLDADGATKVTDLEKLE+Q
Sbjct: 121 AFDFIRKYTIDNIRVIPLGKNQGKGEAIRKGMLHSRGQLLLMLDADGATKVTDLEKLENQ 180
Query: 181 IHAVGRKEYNHGDSVTVDSTFRISDIPIAAFGSRAHLEEKALATRKWYRNFLMKGFHLVV 240
I+AV R+EY+ + + D F+I D+ ++AFGSRAHLEEKALATRKWYRNFLMKGFHLVV
Sbjct: 181 INAVAREEYSIRNPASKDMDFKIGDVQVSAFGSRAHLEEKALATRKWYRNFLMKGFHLVV 240
Query: 241 ILTAGPGIRDTQCGFKMFTRAAARKLFTNIRLKRWCFDVELVYLCKRFGIPIIEISVNWS 300
+L AGPGIRDTQCGFKMFTRAAAR+LFTN+ LKRWCFDVELVYLCKRF IP++EISV WS
Sbjct: 241 LLAAGPGIRDTQCGFKMFTRAAARRLFTNVHLKRWCFDVELVYLCKRFNIPMVEISVKWS 300
Query: 301 EIPGSKVNPLSIPNMLWELALMSVGYRTGMWKV 333
EIPGSKV+ LSIPNMLWELALMSVGYRTGMWK+
Sbjct: 301 EIPGSKVSMLSIPNMLWELALMSVGYRTGMWKI 333
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357503471|ref|XP_003622024.1| Dolichyl-phosphate beta-glucosyltransferase [Medicago truncatula] gi|355497039|gb|AES78242.1| Dolichyl-phosphate beta-glucosyltransferase [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 526 bits (1355), Expect = e-147, Method: Compositional matrix adjust.
Identities = 255/333 (76%), Positives = 285/333 (85%), Gaps = 7/333 (2%)
Query: 1 MGFVCAIVEALLVVVVIILFGLISAIIFEAYRRRDNHAHIEAPAIFEDPSSLKQVPCPSV 60
M F+C IV V ++ G I EAYRRR+NH HIE PAIFEDP+SL QVPCP V
Sbjct: 1 MEFLCLIV----TFAVTLMLGFFLVIFVEAYRRRNNHQHIEVPAIFEDPNSLTQVPCPHV 56
Query: 61 TDPAEKYISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRV 120
DPA KYISLIIPA+NEEHRLPGAL+ET+ YLQ RA+KD SF+YEV+I+DDGS DGTKRV
Sbjct: 57 VDPASKYISLIIPAYNEEHRLPGALEETMIYLQHRASKDPSFSYEVVIVDDGSVDGTKRV 116
Query: 121 AFDFVRKYTVDNVRIILLGRNHGKGEAIRKGMLHSRGELLLMLDADGATKVTDLEKLESQ 180
AF+FVRKYTVD VR+ILLGRNHGKGEAIRKGMLHSRGELLLMLDADGATK+TDLEKLE+Q
Sbjct: 117 AFEFVRKYTVDKVRVILLGRNHGKGEAIRKGMLHSRGELLLMLDADGATKITDLEKLENQ 176
Query: 181 IHAVGRKEYNHGDSVTVDSTFRISDIPIAAFGSRAHLEEKALATRKWYRNFLMKGFHLVV 240
I AV +K+ + S DS+FR+SD P+ FGSRAHLEEKALATRKWYRNFLMKGFHLVV
Sbjct: 177 IRAVAKKDGD---SSGSDSSFRMSDTPVVVFGSRAHLEEKALATRKWYRNFLMKGFHLVV 233
Query: 241 ILTAGPGIRDTQCGFKMFTRAAARKLFTNIRLKRWCFDVELVYLCKRFGIPIIEISVNWS 300
+L AGPGIRDTQCGFKMFTRAAARKLF+N+RLKRWCFDVELV+LCK F IPI EISV WS
Sbjct: 234 LLAAGPGIRDTQCGFKMFTRAAARKLFSNVRLKRWCFDVELVFLCKWFRIPISEISVIWS 293
Query: 301 EIPGSKVNPLSIPNMLWELALMSVGYRTGMWKV 333
EIPGSKVN LSIPNM+WEL LMSVGYR G+W++
Sbjct: 294 EIPGSKVNLLSIPNMVWELLLMSVGYRIGVWRI 326
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 335 | ||||||
| TAIR|locus:2039707 | 336 | AT2G39630 [Arabidopsis thalian | 0.925 | 0.922 | 0.748 | 3.9e-131 | |
| UNIPROTKB|Q9Y673 | 324 | ALG5 "Dolichyl-phosphate beta- | 0.832 | 0.861 | 0.456 | 5.4e-63 | |
| UNIPROTKB|E2R422 | 324 | ALG5 "Uncharacterized protein" | 0.832 | 0.861 | 0.453 | 3e-62 | |
| UNIPROTKB|J9P6U5 | 291 | ALG5 "Uncharacterized protein" | 0.832 | 0.958 | 0.453 | 3e-62 | |
| UNIPROTKB|F1N540 | 324 | ALG5 "Uncharacterized protein" | 0.832 | 0.861 | 0.446 | 1e-61 | |
| FB|FBgn0261020 | 326 | wol "wollknaeuel" [Drosophila | 0.811 | 0.834 | 0.456 | 2.7e-61 | |
| MGI|MGI:1913498 | 324 | Alg5 "asparagine-linked glycos | 0.779 | 0.805 | 0.464 | 2.7e-61 | |
| RGD|1308900 | 324 | Alg5 "ALG5, dolichyl-phosphate | 0.832 | 0.861 | 0.442 | 4.3e-61 | |
| DICTYBASE|DDB_G0288321 | 327 | dgtA "dolichyl phosphate gluco | 0.456 | 0.467 | 0.415 | 2.6e-59 | |
| ZFIN|ZDB-GENE-030131-6586 | 323 | alg5 "asparagine-linked glycos | 0.797 | 0.826 | 0.426 | 5.7e-59 |
| TAIR|locus:2039707 AT2G39630 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1286 (457.8 bits), Expect = 3.9e-131, P = 3.9e-131
Identities = 232/310 (74%), Positives = 277/310 (89%)
Query: 24 SAIIFEAYRRRDNHAHIEAPAIFEDPSSLKQVPCPSVTDPAEKYISLIIPAFNEEHRLPG 83
S ++FEA+RRR ++ +E +DP S+K +PCP +TDPAEKY+SLI+PA+NEE RLP
Sbjct: 24 SVVVFEAWRRRHSNVSVETVTTLDDPKSIKPIPCPHITDPAEKYLSLIVPAYNEELRLPA 83
Query: 84 ALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNHG 143
AL+ET++YLQ RA++DKSF++EV+I+DDGS DGTKRVAFDF+RKYT+DN+R+I LG+N G
Sbjct: 84 ALEETMDYLQDRASRDKSFSFEVVIVDDGSVDGTKRVAFDFIRKYTIDNIRVIPLGKNQG 143
Query: 144 KGEAIRKGMLHSRGELLLMLDADGATKVTDLEKLESQIHAVGRKEYNHGDSVTVDSTFRI 203
KGEAIRKGMLHSRG+LLLMLDADGATKVTDLEKLE+QI+AV R+EY+ + + D F+I
Sbjct: 144 KGEAIRKGMLHSRGQLLLMLDADGATKVTDLEKLENQINAVAREEYSIRNPASKDMDFKI 203
Query: 204 SDIPIAAFGSRAHLEEKALATRKWYRNFLMKGFHLVVILTAGPGIRDTQCGFKMFTRAAA 263
D+ ++AFGSRAHLEEKALATRKWYRNFLMKGFHLVV+L AGPGIRDTQCGFKMFTRAAA
Sbjct: 204 GDVQVSAFGSRAHLEEKALATRKWYRNFLMKGFHLVVLLAAGPGIRDTQCGFKMFTRAAA 263
Query: 264 RKLFTNIRLKRWCFDVELVYLCKRFGIPIIEISVNWSEIPGSKVNPLSIPNMLWELALMS 323
R+LFTN+ LKRWCFDVELVYLCKRF IP++EISV WSEIPGSKV+ LSIPNMLWELALMS
Sbjct: 264 RRLFTNVHLKRWCFDVELVYLCKRFNIPMVEISVKWSEIPGSKVSMLSIPNMLWELALMS 323
Query: 324 VGYRTGMWKV 333
VGYRTGMWK+
Sbjct: 324 VGYRTGMWKI 333
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| UNIPROTKB|Q9Y673 ALG5 "Dolichyl-phosphate beta-glucosyltransferase" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 643 (231.4 bits), Expect = 5.4e-63, P = 5.4e-63
Identities = 136/298 (45%), Positives = 190/298 (63%)
Query: 37 HAHIEAPAIFEDPSSLKQVPCPSVTDPAEKYISLIIPAFNEEHRLPGALDETLNYLQQRA 96
H H E F + K+ PS+ D K +S+++P++NEE RLP +DE L+YL++R
Sbjct: 38 HRH-EEEKFFLNAKGQKET-LPSIWDSPTKQLSVVVPSYNEEKRLPVMMDEALSYLEKRQ 95
Query: 97 AKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNHGKGEAIRKGMLHSR 156
+D +FTYEV+++DDGS D T +VAF + +KY D VR+I L +N GKG AIR G+ SR
Sbjct: 96 KRDPAFTYEVIVVDDGSKDQTSKVAFKYCQKYGSDKVRVITLVKNRGKGGAIRMGIFSSR 155
Query: 157 GELLLMLDADGATKVTDLEKLESQIHAVGRKEYNHGDSVTVDSTFRISDIPIAAFGSRAH 216
GE +LM DADGATK D+EKLE ++ D + I A GSRAH
Sbjct: 156 GEKILMADADGATKFPDVEKLEKGLN----------DLQPWPNQMAI------ACGSRAH 199
Query: 217 LEEKALATRKWYRNFLMKGFHLVVILTAGPGIRDTQCGFKMFTRAAARKLFTNIRLKRWC 276
LE++++A R ++R LM GFH +V GIRDTQCGFK+FTR AA + F+++ ++RW
Sbjct: 200 LEKESIAQRSYFRTLLMYGFHFLVWFLCVKGIRDTQCGFKLFTREAASRTFSSLHVERWA 259
Query: 277 FDVELVYLCKRFGIPIIEISVNWSEIPGSKVNPL-SIPNMLWELALMSVGYRTGMWKV 333
FDVEL+Y+ + F IPI EI+VNW+EI GSK+ P S M +L + + Y TG W++
Sbjct: 260 FDVELLYIAQFFKIPIAEIAVNWTEIEGSKLVPFWSWLQMGKDLLFIRLRYLTGAWRL 317
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| UNIPROTKB|E2R422 ALG5 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 636 (228.9 bits), Expect = 3.0e-62, P = 3.0e-62
Identities = 135/298 (45%), Positives = 188/298 (63%)
Query: 37 HAHIEAPAIFEDPSSLKQVPCPSVTDPAEKYISLIIPAFNEEHRLPGALDETLNYLQQRA 96
H H E F + K+ PSV D K +S+++P++NEE RLP +DE L YL++R
Sbjct: 38 HQH-EEEKFFLNAKGQKET-LPSVWDSPTKQLSVVVPSYNEEKRLPVMMDEALGYLEKRQ 95
Query: 97 AKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNHGKGEAIRKGMLHSR 156
+D +FTYEV+++DDGS D T +VAF + +KY D VR+I L +N GKG AI+ G+ SR
Sbjct: 96 KQDPTFTYEVIVVDDGSKDQTSKVAFKYCQKYGSDKVRVITLVKNRGKGGAIKMGIFSSR 155
Query: 157 GELLLMLDADGATKVTDLEKLESQIHAVGRKEYNHGDSVTVDSTFRISDIPIAAFGSRAH 216
GE +LM DADGAT+ D+EKLE ++ D I A GSRAH
Sbjct: 156 GEKILMADADGATQFPDIEKLEKGLN----------DLQPWPEQMAI------ACGSRAH 199
Query: 217 LEEKALATRKWYRNFLMKGFHLVVILTAGPGIRDTQCGFKMFTRAAARKLFTNIRLKRWC 276
LE++++A R ++R LM GFH +V GIRDTQCGFK+FTR AA + F+++ ++RW
Sbjct: 200 LEKESIAQRSYFRTLLMYGFHFLVWFLCVKGIRDTQCGFKLFTREAASRTFSSLHIERWA 259
Query: 277 FDVELVYLCKRFGIPIIEISVNWSEIPGSKVNPL-SIPNMLWELALMSVGYRTGMWKV 333
FDVEL+Y+ + F IPI EI+VNW+EI GSK+ P S M +L + + Y TG W++
Sbjct: 260 FDVELLYIAQFFKIPIAEIAVNWTEIEGSKLVPFWSWLQMGKDLLFIRLRYLTGAWRL 317
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| UNIPROTKB|J9P6U5 ALG5 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 636 (228.9 bits), Expect = 3.0e-62, P = 3.0e-62
Identities = 135/298 (45%), Positives = 188/298 (63%)
Query: 37 HAHIEAPAIFEDPSSLKQVPCPSVTDPAEKYISLIIPAFNEEHRLPGALDETLNYLQQRA 96
H H E F + K+ PSV D K +S+++P++NEE RLP +DE L YL++R
Sbjct: 5 HQH-EEEKFFLNAKGQKET-LPSVWDSPTKQLSVVVPSYNEEKRLPVMMDEALGYLEKRQ 62
Query: 97 AKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNHGKGEAIRKGMLHSR 156
+D +FTYEV+++DDGS D T +VAF + +KY D VR+I L +N GKG AI+ G+ SR
Sbjct: 63 KQDPTFTYEVIVVDDGSKDQTSKVAFKYCQKYGSDKVRVITLVKNRGKGGAIKMGIFSSR 122
Query: 157 GELLLMLDADGATKVTDLEKLESQIHAVGRKEYNHGDSVTVDSTFRISDIPIAAFGSRAH 216
GE +LM DADGAT+ D+EKLE ++ D I A GSRAH
Sbjct: 123 GEKILMADADGATQFPDIEKLEKGLN----------DLQPWPEQMAI------ACGSRAH 166
Query: 217 LEEKALATRKWYRNFLMKGFHLVVILTAGPGIRDTQCGFKMFTRAAARKLFTNIRLKRWC 276
LE++++A R ++R LM GFH +V GIRDTQCGFK+FTR AA + F+++ ++RW
Sbjct: 167 LEKESIAQRSYFRTLLMYGFHFLVWFLCVKGIRDTQCGFKLFTREAASRTFSSLHIERWA 226
Query: 277 FDVELVYLCKRFGIPIIEISVNWSEIPGSKVNPL-SIPNMLWELALMSVGYRTGMWKV 333
FDVEL+Y+ + F IPI EI+VNW+EI GSK+ P S M +L + + Y TG W++
Sbjct: 227 FDVELLYIAQFFKIPIAEIAVNWTEIEGSKLVPFWSWLQMGKDLLFIRLRYLTGAWRL 284
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| UNIPROTKB|F1N540 ALG5 "Uncharacterized protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 631 (227.2 bits), Expect = 1.0e-61, P = 1.0e-61
Identities = 133/298 (44%), Positives = 190/298 (63%)
Query: 37 HAHIEAPAIFEDPSSLKQVPCPSVTDPAEKYISLIIPAFNEEHRLPGALDETLNYLQQRA 96
H H E F + ++ PS+ D K +S+++P++NEE RLP +DE L YL+ R
Sbjct: 38 HRH-EEEKFFLNVRGQREA-LPSIQDSPTKQLSVVVPSYNEEKRLPVMMDEALGYLEDRQ 95
Query: 97 AKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNHGKGEAIRKGMLHSR 156
+D +FTYEV+I+DDGS D T +VAF + +KY D VR+I L +N GKG AIR G+ SR
Sbjct: 96 KQDPTFTYEVIIVDDGSKDQTSKVAFKYCQKYGSDKVRVITLVKNRGKGGAIRMGVFSSR 155
Query: 157 GELLLMLDADGATKVTDLEKLESQIHAVGRKEYNHGDSVTVDSTFRISDIPIAAFGSRAH 216
G+ +LM DADGATK D+EKLE ++ + + + D + + A GSRAH
Sbjct: 156 GKKILMADADGATKFPDIEKLEKGLNDL--QPWP--DQMAI------------ACGSRAH 199
Query: 217 LEEKALATRKWYRNFLMKGFHLVVILTAGPGIRDTQCGFKMFTRAAARKLFTNIRLKRWC 276
LE++++A R ++R LM GFH +V GIRDTQCGFK+ TR AA + F+++ ++RW
Sbjct: 200 LEKESIAQRSYFRTLLMYGFHFLVWFLCVKGIRDTQCGFKLLTREAASRTFSSLHIERWA 259
Query: 277 FDVELVYLCKRFGIPIIEISVNWSEIPGSKVNPL-SIPNMLWELALMSVGYRTGMWKV 333
FDVEL+Y+ + F IPI EI+VNW+EI GSK+ P S M +L + + Y TG W++
Sbjct: 260 FDVELLYIAQFFKIPIAEIAVNWTEIEGSKLVPFWSWLQMGKDLLFIRLRYLTGAWRL 317
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| FB|FBgn0261020 wol "wollknaeuel" [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 627 (225.8 bits), Expect = 2.7e-61, P = 2.7e-61
Identities = 132/289 (45%), Positives = 182/289 (62%)
Query: 46 FEDPSSLKQVPCPSVTDPAEKYISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYE 105
F DP ++K V PS+ D +S+I+PA+NEE RLP LDE L +L+Q++A +FTYE
Sbjct: 46 FLDPHTIKTVTFPSLEDSPSLELSVIVPAYNEEQRLPSMLDECLAFLEQKSAGTPNFTYE 105
Query: 106 VLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNHGKGEAIRKGMLHSRGELLLMLDA 165
V+++ DGS D T VA + +K+ + VR++ L N GKG A+R GML +RG LL DA
Sbjct: 106 VIVVSDGSQDATVSVALGYSKKHGAEKVRVLELIENRGKGGAVRMGMLSARGRNLLFADA 165
Query: 166 DGATKVTDLEKLESQIHAVGRKEYNHGDSVTVDSTFRISDIPIAAFGSRAHLEEKALATR 225
DGATK D +KLE + + E+ D + A GSRAHLE A+ATR
Sbjct: 166 DGATKFPDYDKLEVALKQLA-PEWRD-DGI--------------AIGSRAHLENDAIATR 209
Query: 226 KWYRNFLMKGFHLVVILTAGPGIRDTQCGFKMFTRAAARKLFTNIRLKRWCFDVELVYLC 285
++R LM GFH +V L A IRDTQCGFK+FTR ARKLFT++ ++RW FDVEL+YL
Sbjct: 210 SFFRTILMHGFHFLVWLFAVRSIRDTQCGFKLFTRTTARKLFTSLHVERWAFDVELLYLA 269
Query: 286 KRFGIPIIEISVNWSEIPGSKVNPL-SIPNMLWELALMSVGYRTGMWKV 333
+ +P+ E++V W+EI GSK+ P S M +L ++ V Y G W++
Sbjct: 270 ENLKLPMSEVAVRWTEIDGSKLTPFWSWLQMGRDLFMIWVRYLVGAWRI 318
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| MGI|MGI:1913498 Alg5 "asparagine-linked glycosylation 5 (dolichyl-phosphate beta-glucosyltransferase)" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 627 (225.8 bits), Expect = 2.7e-61, P = 2.7e-61
Identities = 129/278 (46%), Positives = 179/278 (64%)
Query: 58 PSVTDPAEKYISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGT 117
PS+ D K +S+++P++NEE RLP +DE LNYL++R D +FTYEV+++DDGS D T
Sbjct: 57 PSIWDSPTKQLSVVVPSYNEEKRLPVMMDEALNYLEKRQKHDCTFTYEVIVVDDGSEDQT 116
Query: 118 KRVAFDFVRKYTVDNVRIILLGRNHGKGEAIRKGMLHSRGELLLMLDADGATKVTDLEKL 177
+VA + +KY D VR+I L RN GKG A+R G+ SRGE +LM DADGATK D+EKL
Sbjct: 117 SKVALKYCQKYGSDKVRVITLVRNRGKGGAVRMGVFSSRGEKILMADADGATKFPDVEKL 176
Query: 178 ESQIHAVGRKEYNHGDSVTVDSTFRISDIPIAAFGSRAHLEEKALATRKWYRNFLMKGFH 237
E + D I A GSRAHLE++++A R ++R FLM GFH
Sbjct: 177 EKGL----------SDLQPWPEQMAI------ACGSRAHLEKESIAQRSYFRTFLMYGFH 220
Query: 238 LVVILTAGPGIRDTQCGFKMFTRAAARKLFTNIRLKRWCFDVELVYLCKRFGIPIIEISV 297
+V GIRDTQCGFK+ TR AA + F+++ ++RW FDVEL+Y+ + IPI E++V
Sbjct: 221 FLVWFLCVKGIRDTQCGFKLLTREAAARTFSSLHIERWAFDVELLYIAQCLQIPIAEVAV 280
Query: 298 NWSEIPGSKVNPL-SIPNMLWELALMSVGYRTGMWKVR 334
NW+EI GSK+ P S M +L + + Y TG W+++
Sbjct: 281 NWTEIEGSKLVPFWSWLQMGKDLLFIRLRYLTGAWRLK 318
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| RGD|1308900 Alg5 "ALG5, dolichyl-phosphate beta-glucosyltransferase" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 625 (225.1 bits), Expect = 4.3e-61, P = 4.3e-61
Identities = 132/298 (44%), Positives = 185/298 (62%)
Query: 37 HAHIEAPAIFEDPSSLKQVPCPSVTDPAEKYISLIIPAFNEEHRLPGALDETLNYLQQRA 96
H H E F + K+ PS+ D K +S+++P++NEE RLP +DE LNYL++R
Sbjct: 38 HRH-EEEKFFLNARGQKEA-LPSIWDSPTKQLSVVVPSYNEEKRLPVMMDEALNYLEKRQ 95
Query: 97 AKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNHGKGEAIRKGMLHSR 156
D++FTYEV+++DDGS D T +VA + +KY D VR+I L +N GKG A+R G+ SR
Sbjct: 96 KHDRTFTYEVIVVDDGSEDQTSKVALKYCQKYGSDKVRVITLVQNRGKGGAVRMGVFSSR 155
Query: 157 GELLLMLDADGATKVTDLEKLESQIHAVGRKEYNHGDSVTVDSTFRISDIPIAAFGSRAH 216
GE +LM DADGATK D+EKLE + D I A GSRAH
Sbjct: 156 GEKILMADADGATKFPDVEKLEKGL----------SDLQPWPEQMAI------ACGSRAH 199
Query: 217 LEEKALATRKWYRNFLMKGFHLVVILTAGPGIRDTQCGFKMFTRAAARKLFTNIRLKRWC 276
LE++++A R ++R LM GFH +V GIRDTQCGFK+ TR AA + F+++ ++RW
Sbjct: 200 LEKESIAQRSYFRTLLMYGFHFLVWFLCVKGIRDTQCGFKLLTREAAARTFSSLHIERWA 259
Query: 277 FDVELVYLCKRFGIPIIEISVNWSEIPGSKVNPL-SIPNMLWELALMSVGYRTGMWKV 333
FDVEL+Y+ + IPI E++VNW+EI GSK+ P S M +L + + Y TG W++
Sbjct: 260 FDVELLYIAQFLQIPIAEVAVNWTEIEGSKLVPFWSWLQMGKDLLFIRLRYLTGAWRL 317
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| DICTYBASE|DDB_G0288321 dgtA "dolichyl phosphate glucosyltransferase" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
Score = 317 (116.6 bits), Expect = 2.6e-59, Sum P(2) = 2.6e-59
Identities = 66/159 (41%), Positives = 99/159 (62%)
Query: 181 IHAVGRKEYNHGDSVTVDSTFRI--SDIPIAAFGSRAHLEEKAL-ATRKWYRNFLMKGFH 237
+ A G E+ + V D +I +D+ I GSR+HL + L A R + RN LM GFH
Sbjct: 171 VDADGATEFKDFNRVE-DIMHKIEKNDLGIVC-GSRSHLVDSDLVAKRSFLRNILMYGFH 228
Query: 238 LVVILTAGPGIRDTQCGFKMFTRAAARKLFTNIRLKRWCFDVELVYLCKRFGIPIIEISV 297
+ V GI+DTQCGFK+FTR AR++F + ++RW FDVE++YL ++ IPI E++V
Sbjct: 229 IFVQTLCVKGIKDTQCGFKLFTRETARRIFPTLHIERWAFDVEILYLAQKLNIPIAEVAV 288
Query: 298 NWSEIPGSKVNPLSIP-NMLWELALMSVGYRTGMWKVRT 335
NW+EI GSK++P S M ++ + Y G+WK+++
Sbjct: 289 NWTEIDGSKLDPFSSSIQMAKDIVRIRFRYLLGIWKIKS 327
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| ZFIN|ZDB-GENE-030131-6586 alg5 "asparagine-linked glycosylation 5 homolog (yeast, dolichyl-phosphate beta-glucosyltransferase)" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 605 (218.0 bits), Expect = 5.7e-59, P = 5.7e-59
Identities = 121/284 (42%), Positives = 183/284 (64%)
Query: 53 KQVPCPSVTDPAEKYISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDG 112
K+ PS+ +P +S+++P++NEE RLP +DE ++YL++R ++ FTYEV+++DDG
Sbjct: 51 KREDFPSLMEPPSIDLSVVVPSYNEELRLPVMMDEAMDYLEKRQKENPPFTYEVIVVDDG 110
Query: 113 SSDGTKRVAFDFVRKYTVDNVRIILLGRNHGKGEAIRKGMLHSRGELLLMLDADGATKVT 172
S D T VA + +KY VR++ L +N GKG A++ G L RG L+LM DADGATK
Sbjct: 111 SKDKTTEVAMKYTKKYGAKKVRVLTLVKNRGKGGAVKMGTLSCRGRLILMADADGATKFA 170
Query: 173 DLEKLESQIHAVGRKEYNHGDSVTVDSTFRISDIPIAAFGSRAHLEEKALATRKWYRNFL 232
D+EK+E + ++ K D++ + GSRAHLE++++A R +R FL
Sbjct: 171 DVEKVEEGLESITEKP----DNMAISC------------GSRAHLEKESVAQRSMFRTFL 214
Query: 233 MKGFHLVVILTAGPGIRDTQCGFKMFTRAAARKLFTNIRLKRWCFDVELVYLCKRFGIPI 292
M GFH +V GI+DTQCGFK+FTR AA K F+++ ++RW FDVEL+++ + F IPI
Sbjct: 215 MYGFHFLVWFFCVRGIKDTQCGFKLFTREAALKTFSSLHVERWAFDVELLFIAQCFDIPI 274
Query: 293 IEISVNWSEIPGSKVNPL-SIPNMLWELALMSVGYRTGMWKVRT 335
E++VNW+EI GSK+ P S M +L + + Y TG W++ +
Sbjct: 275 EEVAVNWTEIEGSKLVPFWSWLQMGRDLIFIRLRYLTGAWRLES 318
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| O60061 | ALG5_SCHPO | 2, ., 4, ., 1, ., 1, 1, 7 | 0.3223 | 0.8925 | 0.9285 | yes | no |
| Q54J42 | ALG5_DICDI | 2, ., 4, ., 1, ., 1, 1, 7 | 0.3874 | 0.8298 | 0.8501 | yes | no |
| Q9Y673 | ALG5_HUMAN | 2, ., 4, ., 1, ., 1, 1, 7 | 0.4563 | 0.8328 | 0.8611 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 2.4.1 | 0.921 |
| 4th Layer | 2.4.1.80 | LOW CONFIDENCE prediction! |
| 4th Layer | 2.4.1.117 | 0.914 |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
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 | estExt_fgenesh4_pg.C_LG_VIII0457 | hypothetical protein (335 aa) | |||||||||
(Populus trichocarpa) | |||||||||||
Predicted Functional Partners: | |||||||||||
 | gw1.123.232.1 | hypothetical protein (485 aa) | • | • | • | 0.911 | |||||
 | fgenesh4_pm.C_LG_V000700 | dolichyl-phosphate beta-D-mannosyltransferase (EC-2.4.1.83) (238 aa) | • | • | • | • | 0.906 | ||||
 | estExt_Genewise1_v1.C_LG_II0203 | dolichyl-phosphate beta-D-mannosyltransferase (EC-2.4.1.83) (240 aa) | • | • | • | • | 0.906 | ||||
 | gw1.XVI.1421.1 | hypothetical protein (391 aa) | • | • | 0.906 | ||||||
 | estExt_fgenesh4_pg.C_290241 | hypothetical protein (80 aa) | • | • | 0.902 | ||||||
 | estExt_fgenesh4_pm.C_280064 | hypothetical protein (223 aa) | • | • | 0.902 | ||||||
 | grail3.0004040902 | hypothetical protein (222 aa) | • | • | 0.900 | ||||||
 | gw1.IX.4952.1 | hypothetical protein (586 aa) | • | 0.899 | |||||||
 | fgenesh4_pg.C_LG_II002473 | hypothetical protein (89 aa) | • | 0.899 | |||||||
 | eugene3.12510002 | annotation not avaliable (55 aa) | • | 0.899 | |||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 335 | |||
| cd04188 | 211 | cd04188, DPG_synthase, DPG_synthase is involved in | 1e-102 | |
| PTZ00260 | 333 | PTZ00260, PTZ00260, dolichyl-phosphate beta-glucos | 2e-95 | |
| cd04179 | 185 | cd04179, DPM_DPG-synthase_like, DPM_DPG-synthase_l | 1e-47 | |
| pfam00535 | 168 | pfam00535, Glycos_transf_2, Glycosyl transferase f | 2e-21 | |
| cd06442 | 224 | cd06442, DPM1_like, DPM1_like represents putative | 1e-18 | |
| cd04187 | 181 | cd04187, DPM1_like_bac, Bacterial DPM1_like enzyme | 5e-17 | |
| cd00761 | 156 | cd00761, Glyco_tranf_GTA_type, Glycosyltransferase | 8e-16 | |
| cd06423 | 180 | cd06423, CESA_like, CESA_like is the cellulose syn | 1e-14 | |
| COG0463 | 291 | COG0463, WcaA, Glycosyltransferases involved in ce | 2e-14 | |
| cd06439 | 251 | cd06439, CESA_like_1, CESA_like_1 is a member of t | 3e-14 | |
| PRK11204 | 420 | PRK11204, PRK11204, N-glycosyltransferase; Provisi | 2e-13 | |
| TIGR03937 | 407 | TIGR03937, PgaC_IcaA, poly-beta-1,6 N-acetyl-D-glu | 5e-13 | |
| COG1215 | 439 | COG1215, COG1215, Glycosyltransferases, probably i | 2e-12 | |
| PRK10714 | 325 | PRK10714, PRK10714, undecaprenyl phosphate 4-deoxy | 7e-12 | |
| PLN02726 | 243 | PLN02726, PLN02726, dolichyl-phosphate beta-D-mann | 1e-11 | |
| cd02525 | 249 | cd02525, Succinoglycan_BP_ExoA, ExoA is involved i | 2e-11 | |
| cd04192 | 229 | cd04192, GT_2_like_e, Subfamily of Glycosyltransfe | 2e-09 | |
| TIGR04283 | 220 | TIGR04283, glyco_like_mftF, transferase 2, rSAM/se | 4e-08 | |
| cd02522 | 221 | cd02522, GT_2_like_a, GT_2_like_a represents a gly | 5e-08 | |
| PRK13915 | 306 | PRK13915, PRK13915, putative glucosyl-3-phosphogly | 6e-08 | |
| PRK14583 | 444 | PRK14583, hmsR, N-glycosyltransferase; Provisional | 1e-06 | |
| cd02511 | 229 | cd02511, Beta4Glucosyltransferase, UDP-glucose LOS | 5e-06 | |
| cd04186 | 166 | cd04186, GT_2_like_c, Subfamily of Glycosyltransfe | 1e-05 | |
| TIGR04182 | 293 | TIGR04182, glyco_TIGR04182, glycosyltransferase, T | 1e-05 | |
| TIGR04242 | 395 | TIGR04242, nodulat_NodC, chitooligosaccharide synt | 2e-05 | |
| pfam13641 | 229 | pfam13641, Glyco_tranf_2_3, Glycosyltransferase li | 5e-05 | |
| cd06433 | 202 | cd06433, GT_2_WfgS_like, WfgS and WfeV are involve | 6e-04 | |
| PRK10073 | 328 | PRK10073, PRK10073, putative glycosyl transferase; | 0.001 | |
| cd06436 | 191 | cd06436, GlcNAc-1-P_transferase, N-acetyl-glucosam | 0.001 | |
| cd04196 | 214 | cd04196, GT_2_like_d, Subfamily of Glycosyltransfe | 0.001 | |
| PRK10063 | 248 | PRK10063, PRK10063, putative glycosyl transferase; | 0.002 | |
| cd04195 | 201 | cd04195, GT2_AmsE_like, GT2_AmsE_like is involved | 0.002 | |
| TIGR03111 | 439 | TIGR03111, glyc2_xrt_Gpos1, putative glycosyltrans | 0.002 | |
| cd06913 | 219 | cd06913, beta3GnTL1_like, Beta 1, 3-N-acetylglucos | 0.004 |
| >gnl|CDD|133031 cd04188, DPG_synthase, DPG_synthase is involved in protein N-linked glycosylation | Back alignment and domain information |
|---|
Score = 300 bits (770), Expect = e-102
Identities = 113/237 (47%), Positives = 147/237 (62%), Gaps = 26/237 (10%)
Query: 70 LIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYT 129
++IPA+NEE RLP L+E + YL++R SF+YE++++DDGS DGT VA RK
Sbjct: 1 VVIPAYNEEKRLPPTLEEAVEYLEER----PSFSYEIIVVDDGSKDGTAEVARKLARKNP 56
Query: 130 VDNVRIILLGRNHGKGEAIRKGMLHSRGELLLMLDADGATKVTDLEKLESQIHAVGRKEY 189
+R++ L +N GKG A+R GML +RG+ +L DAD AT +LEKLE + G
Sbjct: 57 -ALIRVLTLPKNRGKGGAVRAGMLAARGDYILFADADLATPFEELEKLEEALKTSG---- 111
Query: 190 NHGDSVTVDSTFRISDIPIAAFGSRAHLEEKALATRKWYRNFLMKGFHLVVILTAGPGIR 249
DI A GSRAHL A+ R W RN L +GF+ +V L G GI+
Sbjct: 112 --------------YDI---AIGSRAHLASAAVVKRSWLRNLLGRGFNFLVRLLLGLGIK 154
Query: 250 DTQCGFKMFTRAAARKLFTNIRLKRWCFDVELVYLCKRFGIPIIEISVNWSEIPGSK 306
DTQCGFK+FTR AAR+LF + L+RW FDVEL+ L +R G PI E+ V W EIPGSK
Sbjct: 155 DTQCGFKLFTRDAARRLFPRLHLERWAFDVELLVLARRLGYPIEEVPVRWVEIPGSK 211
|
UDP-glucose:dolichyl-phosphate glucosyltransferase (DPG_synthase) is a transmembrane-bound enzyme of the endoplasmic reticulum involved in protein N-linked glycosylation. This enzyme catalyzes the transfer of glucose from UDP-glucose to dolichyl phosphate. Length = 211 |
| >gnl|CDD|240336 PTZ00260, PTZ00260, dolichyl-phosphate beta-glucosyltransferase; Provisional | Back alignment and domain information |
|---|
Score = 285 bits (732), Expect = 2e-95
Identities = 127/340 (37%), Positives = 193/340 (56%), Gaps = 29/340 (8%)
Query: 7 IVEALLVVVVIILFGLISAIIFEAY------RRRDNHAHIEAPAIFEDPS-SLKQVPCPS 59
I + + ++I+ GL+ + Y +++ I E K+ +
Sbjct: 4 IWKVIFKHRMLIVLGLVVGLALLFYPYISWPDDDKVIRQVKSSVIHEKSKEVDKENYINN 63
Query: 60 VTDPAEKYISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKR 119
+ ++ +S++IPA+NEE RLP L ET+ YL+ R+ KD F YE++I++DGS D T +
Sbjct: 64 ILKDSDVDLSIVIPAYNEEDRLPKMLKETIKYLESRSRKDPKFKYEIIIVNDGSKDKTLK 123
Query: 120 VAFDFVRKYTVDNV--RIILLGRNHGKGEAIRKGMLHSRGELLLMLDADGATKVTDLEKL 177
VA DF R+ N+ R++ L RN GKG A+R GML SRG+ +LM+DADGAT + D +KL
Sbjct: 124 VAKDFWRQNINPNIDIRLLSLLRNKGKGGAVRIGMLASRGKYILMVDADGATDIDDFDKL 183
Query: 178 ESQIHAVGRKEYNHGDSVTVDSTFRISDIPIAAFGSRAHL-EEKALATRKWYRNFLMKGF 236
E + + + FGSR HL + +A RKWYRN LM GF
Sbjct: 184 EDIMLKIEQNGLG------------------IVFGSRNHLVDSDVVAKRKWYRNILMYGF 225
Query: 237 HLVVILTAGPGIRDTQCGFKMFTRAAARKLFTNIRLKRWCFDVELVYLCKRFGIPIIEIS 296
H +V G ++DTQCGFK+FTR AR +F ++ L+RW FD+E+V + ++ +PI E+
Sbjct: 226 HFIVNTICGTNLKDTQCGFKLFTRETARIIFPSLHLERWAFDIEIVMIAQKLNLPIAEVP 285
Query: 297 VNWSEIPGSKVNPLS-IPNMLWELALMSVGYRTGMWKVRT 335
VNW+E+ GSK+N +S M ++ L+ Y G+WKV+
Sbjct: 286 VNWTEVEGSKLNVISASIQMARDILLVRSFYLLGIWKVKD 325
|
Length = 333 |
| >gnl|CDD|133022 cd04179, DPM_DPG-synthase_like, DPM_DPG-synthase_like is a member of the Glycosyltransferase 2 superfamily | Back alignment and domain information |
|---|
Score = 158 bits (402), Expect = 1e-47
Identities = 61/216 (28%), Positives = 101/216 (46%), Gaps = 31/216 (14%)
Query: 70 LIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYT 129
++IPA+NEE +P ++ L L ++ + YE++++DDGS+DGT +A + +
Sbjct: 1 VVIPAYNEEENIPELVERLLAVL------EEGYDYEIIVVDDGSTDGTAEIARELAAR-- 52
Query: 130 VDNVRIILLGRNHGKGEAIRKGMLHSRGELLLMLDADGATKVTDLEKLESQIHAVGRKEY 189
V VR+I L RN GKG A+R G +RG++++ +DAD D+ KL + +
Sbjct: 53 VPRVRVIRLSRNFGKGAAVRAGFKAARGDIVVTMDADLQHPPEDIPKL---LEKLLEGGA 109
Query: 190 NHGDSVTVDSTFRISDIPIAAFGSRAHLEEKALATRKWYRNFLMKGFHLVVILTAGPGIR 249
D+ GSR A R + F+ ++ L G I
Sbjct: 110 ---------------DV---VIGSRFVRGGGA--GMPLLRRLGSRLFNFLIRLLLGVRIS 149
Query: 250 DTQCGFKMFTRAAARKLFTNIRLKRWCFDVELVYLC 285
DTQ GF++F R L + + + F +EL+
Sbjct: 150 DTQSGFRLFRREVLEALLSLLESNGFEFGLELLVGA 185
|
DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi, and animals, have no transmembrane region, suggesting the existence of adapter molecules for membrane anchoring. This family also includes bacteria and archaea DPM1_like enzymes. However, the enzyme structure and mechanism of function are not well understood. The UDP-glucose:dolichyl-phosphate glucosyltransferase (DPG_synthase) is a transmembrane-bound enzyme of the endoplasmic reticulum involved in protein N-linked glycosylation. This enzyme catalyzes the transfer of glucose from UDP-glucose to dolichyl phosphate. This protein family belongs to Glycosyltransferase 2 superfamily. Length = 185 |
| >gnl|CDD|215980 pfam00535, Glycos_transf_2, Glycosyl transferase family 2 | Back alignment and domain information |
|---|
Score = 89.1 bits (221), Expect = 2e-21
Identities = 47/199 (23%), Positives = 77/199 (38%), Gaps = 31/199 (15%)
Query: 69 SLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKY 128
S+IIP +NEE L L+ LN + +E++++DDGS+DGT +A ++ +
Sbjct: 1 SVIIPTYNEEKYLEETLESLLNQTYKN--------FEIIVVDDGSTDGTVEIAEEYAKND 52
Query: 129 TVDNVRIILLGRNHGKGEAIRKGMLHSRGELLLMLDADGATKVTDLEKLESQIHAVGRKE 188
VR+I L N GK A G+ + G+ + LDAD LEKL + G
Sbjct: 53 --PRVRVIRLEENLGKAAARNAGLKLATGDYIAFLDADDEVAPDWLEKLVELLEKNG--- 107
Query: 189 YNHGDSVTVDSTFRISDIPIAAFGSRAHLEEKALATRKWYRNFLMKGFHLVVILTAGPGI 248
GSR + + + R L+ + + G +
Sbjct: 108 ------------------ADIVIGSRVVINGETRLYGRALRFELLLLLGKLGARSLGLKV 149
Query: 249 RDTQCGFKMFTRAAARKLF 267
++ R +L
Sbjct: 150 LFLIGSNALYRREVLEELL 168
|
Diverse family, transferring sugar from UDP-glucose, UDP-N-acetyl- galactosamine, GDP-mannose or CDP-abequose, to a range of substrates including cellulose, dolichol phosphate and teichoic acids. Length = 168 |
| >gnl|CDD|133062 cd06442, DPM1_like, DPM1_like represents putative enzymes similar to eukaryotic DPM1 | Back alignment and domain information |
|---|
Score = 83.0 bits (206), Expect = 1e-18
Identities = 56/226 (24%), Positives = 102/226 (45%), Gaps = 31/226 (13%)
Query: 70 LIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYT 129
+IIP +NE +P ++ L K YE++++DD S DGT + + ++Y
Sbjct: 1 IIIPTYNERENIPELIERLDAAL-------KGIDYEIIVVDDNSPDGTAEIVRELAKEY- 52
Query: 130 VDNVRIILLGRNHGKGEAIRKGMLHSRGELLLMLDADGATKVTDLEKLESQIHAVGRKEY 189
VR+I+ G G A +G +RG++++++DAD + + +L + A
Sbjct: 53 -PRVRLIVRPGKRGLGSAYIEGFKAARGDVIVVMDADLSHPPEYIPEL---LEAQLEGGA 108
Query: 190 NHGDSVTVDSTFRISDIPIAAFGSRAHLEEKALATRKWYRNFLMKGFHLVVILTAGPGIR 249
D+ I GSR ++E + R + +G +L+ L G +
Sbjct: 109 ---------------DLVI---GSR-YVEGGGVEGWGLKRKLISRGANLLARLLLGRKVS 149
Query: 250 DTQCGFKMFTRAAARKLFTNIRLKRWCFDVELVYLCKRFGIPIIEI 295
D GF+ + R KL ++ K + F +EL+ +R G I+E+
Sbjct: 150 DPTSGFRAYRREVLEKLIDSLVSKGYKFQLELLVRARRLGYRIVEV 195
|
Proteins similar to eukaryotic DPM1, including enzymes from bacteria and archaea; DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi, and animals, have no transmembrane region, suggesting the existence of adapter molecules for membrane anchoring. This family also includes bacteria and archaea DPM1_like enzymes. However, the enzyme structure and mechanism of function are not well understood. This protein family belongs to Glycosyltransferase 2 superfamily. Length = 224 |
| >gnl|CDD|133030 cd04187, DPM1_like_bac, Bacterial DPM1_like enzymes are related to eukaryotic DPM1 | Back alignment and domain information |
|---|
Score = 77.1 bits (191), Expect = 5e-17
Identities = 30/100 (30%), Positives = 54/100 (54%), Gaps = 13/100 (13%)
Query: 70 LIIPAFNEEHRLPGALDETLNYLQQR---AAKDKSFTYEVLIIDDGSSDGTKRVAFDFVR 126
+++P +NEE E L L +R + + YE++ +DDGS+D T + +
Sbjct: 1 IVVPVYNEE--------ENLPELYERLKAVLESLGYDYEIIFVDDGSTDRTLEILRELAA 52
Query: 127 KYTVDNVRIILLGRNHGKGEAIRKGMLHSRGELLLMLDAD 166
+ V++I L RN G+ A+ G+ H+RG+ ++ +DAD
Sbjct: 53 RD--PRVKVIRLSRNFGQQAALLAGLDHARGDAVITMDAD 90
|
A family of bacterial enzymes related to eukaryotic DPM1; Although the mechanism of eukaryotic enzyme is well studied, the mechanism of the bacterial enzymes is not well understood. The eukaryotic DPM1 is the catalytic subunit of eukaryotic Dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. The enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. This protein family belongs to Glycosyltransferase 2 superfamily. Length = 181 |
| >gnl|CDD|132997 cd00761, Glyco_tranf_GTA_type, Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold | Back alignment and domain information |
|---|
Score = 73.3 bits (180), Expect = 8e-16
Identities = 38/113 (33%), Positives = 59/113 (52%), Gaps = 10/113 (8%)
Query: 71 IIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTV 130
IIPA+NEE L L+ + L Q +EV+++DDGS+DGT + ++ +K
Sbjct: 2 IIPAYNEEPYLERCLE---SLLAQTYPN-----FEVIVVDDGSTDGTLEILEEYAKKD-- 51
Query: 131 DNVRIILLGRNHGKGEAIRKGMLHSRGELLLMLDADGATKVTDLEKLESQIHA 183
V ++ N G A G+ +RGE +L LDAD LE+L +++ A
Sbjct: 52 PRVIRVINEENQGLAAARNAGLKAARGEYILFLDADDLLLPDWLERLVAELLA 104
|
Glycosyltransferases (GTs) are enzymes that synthesize oligosaccharides, polysaccharides, and glycoconjugates by transferring the sugar moiety from an activated nucleotide-sugar donor to an acceptor molecule, which may be a growing oligosaccharide, a lipid, or a protein. Based on the stereochemistry of the donor and acceptor molecules, GTs are classified as either retaining or inverting enzymes. To date, all GT structures adopt one of two possible folds, termed GT-A fold and GT-B fold. This hierarchy includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. The majority of the proteins in this superfamily are Glycosyltransferase family 2 (GT-2) proteins. But it also includes families GT-43, GT-6, GT-8, GT13 and GT-7; which are evolutionarily related to GT-2 and share structure similarities. Length = 156 |
| >gnl|CDD|133045 cd06423, CESA_like, CESA_like is the cellulose synthase superfamily | Back alignment and domain information |
|---|
Score = 70.7 bits (174), Expect = 1e-14
Identities = 29/99 (29%), Positives = 54/99 (54%), Gaps = 13/99 (13%)
Query: 70 LIIPAFNEEHRLPGALD--ETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRK 127
+I+PA+NEE + ++ L+Y + EV+++DDGS+D T + +
Sbjct: 1 IIVPAYNEEAVIERTIESLLALDYPK----------LEVIVVDDGSTDDTLEILEELAAL 50
Query: 128 YTVDNVRIILLGRNHGKGEAIRKGMLHSRGELLLMLDAD 166
Y V ++ N GK A+ G+ H++G+++++LDAD
Sbjct: 51 YI-RRVLVVRDKENGGKAGALNAGLRHAKGDIVVVLDAD 88
|
The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis protein catalyzes the elongation of beta-1,2 polyglucose chains of Glucan. Length = 180 |
| >gnl|CDD|223539 COG0463, WcaA, Glycosyltransferases involved in cell wall biogenesis [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 72.0 bits (175), Expect = 2e-14
Identities = 35/117 (29%), Positives = 61/117 (52%), Gaps = 10/117 (8%)
Query: 68 ISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRK 127
+S++IP +NEE LP AL+ LN + +E++++DDGS+DGT +A ++ K
Sbjct: 5 VSVVIPTYNEEEYLPEALESLLNQTYKD--------FEIIVVDDGSTDGTTEIAIEYGAK 56
Query: 128 YTVDNVRIILLGRNHGKGEAIRKGMLHSRGELLLMLDADGATKVTDLEKLESQIHAV 184
V ++ RN G G A G+ ++RG+ ++ LDAD + + +
Sbjct: 57 --DVRVIRLINERNGGLGAARNAGLEYARGDYIVFLDADDQHPPELIPLVAAGGDGD 111
|
Length = 291 |
| >gnl|CDD|133061 cd06439, CESA_like_1, CESA_like_1 is a member of the cellulose synthase (CESA) superfamily | Back alignment and domain information |
|---|
Score = 71.1 bits (175), Expect = 3e-14
Identities = 28/99 (28%), Positives = 54/99 (54%), Gaps = 10/99 (10%)
Query: 68 ISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRK 127
+++IIPA+NEE + L+ N L +D+ E++++ DGS+DGT + R+
Sbjct: 31 VTIIIPAYNEEAVIEAKLE---NLLALDYPRDR---LEIIVVSDGSTDGTA----EIARE 80
Query: 128 YTVDNVRIILLGRNHGKGEAIRKGMLHSRGELLLMLDAD 166
Y V+++ GK A+ + + + GE+++ DA+
Sbjct: 81 YADKGVKLLRFPERRGKAAALNRALALATGEIVVFTDAN 119
|
This is a subfamily of cellulose synthase (CESA) superfamily. CESA superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members of the superfamily include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins. Length = 251 |
| >gnl|CDD|236882 PRK11204, PRK11204, N-glycosyltransferase; Provisional | Back alignment and domain information |
|---|
Score = 70.7 bits (174), Expect = 2e-13
Identities = 31/100 (31%), Positives = 51/100 (51%), Gaps = 12/100 (12%)
Query: 68 ISLIIPAFNEEHRLPGALDETLNY-LQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVR 126
+S+++P +NE + +ET+++ L R YEV+ I+DGSSD T +
Sbjct: 56 VSILVPCYNEGENV----EETISHLLALRYPN-----YEVIAINDGSSDNTGEILDRLAA 106
Query: 127 KYTVDNVRIILLGRNHGKGEAIRKGMLHSRGELLLMLDAD 166
+ +R+I L N GK A+ G +R E L+ +D D
Sbjct: 107 QI--PRLRVIHLAENQGKANALNTGAAAARSEYLVCIDGD 144
|
Length = 420 |
| >gnl|CDD|188452 TIGR03937, PgaC_IcaA, poly-beta-1,6 N-acetyl-D-glucosamine synthase | Back alignment and domain information |
|---|
Score = 68.8 bits (169), Expect = 5e-13
Identities = 28/100 (28%), Positives = 52/100 (52%), Gaps = 12/100 (12%)
Query: 68 ISLIIPAFNEEHRLPGALDETLNY-LQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVR 126
+S+++P +NE + +ET+++ L R +E++ I+DGS D T +
Sbjct: 47 VSILVPCYNEGANV----EETISHLLALRYPN-----FEIIAINDGSKDNTAEILDRLAA 97
Query: 127 KYTVDNVRIILLGRNHGKGEAIRKGMLHSRGELLLMLDAD 166
+ +R+I L N GK A+ G+L ++ E L+ +D D
Sbjct: 98 QD--PRLRVIHLAENQGKANALNTGLLAAKYEYLVCIDGD 135
|
Members of this protein family are biofilm-forming enzymes that polymerize N-acetyl-D-glucosamine residues in beta(1,6) linkage. One named members is IcaA (intercellular adhesin protein A), an enzyme that acts (with aid of subunit IcaD) in Polysaccharide Intercellular Adhesin (PIA) biosynthesis in Staphylococcus epidermis). The homologous member in E. coli is designated PgaC. Members are often encoded next to a polysaccharide deacetylase and involved in biofilm formation. Note that chitin, although also made from N-acetylglucosamine, is formed with beta-1,4 linkages. Length = 407 |
| >gnl|CDD|224136 COG1215, COG1215, Glycosyltransferases, probably involved in cell wall biogenesis [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 67.3 bits (164), Expect = 2e-12
Identities = 46/162 (28%), Positives = 78/162 (48%), Gaps = 17/162 (10%)
Query: 16 VIILFGLISAIIFEAYRRRDNHAHIEAPAIFEDPSSLKQVPCPSVTDPAEKYISLIIPAF 75
+I++ LI +II + + P S + P D +S+IIPA+
Sbjct: 14 LILILLLILSIIT----------LLLGYLLLVLPLSRPRKKLPKDADKLLPKVSVIIPAY 63
Query: 76 NEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRI 135
NEE P L+ETL L + YEV+++DDGS+D T + + +Y + I
Sbjct: 64 NEE---PEVLEETLESLLSQDYPR----YEVIVVDDGSTDETYEILEELGAEYGPNFRVI 116
Query: 136 ILLGRNHGKGEAIRKGMLHSRGELLLMLDADGATKVTDLEKL 177
+N GK A+ G+ ++G+++++LDAD + L +L
Sbjct: 117 YPEKKNGGKAGALNNGLKRAKGDVVVILDADTVPEPDALREL 158
|
Length = 439 |
| >gnl|CDD|182669 PRK10714, PRK10714, undecaprenyl phosphate 4-deoxy-4-formamido-L-arabinose transferase; Provisional | Back alignment and domain information |
|---|
Score = 65.1 bits (159), Expect = 7e-12
Identities = 36/108 (33%), Positives = 55/108 (50%), Gaps = 10/108 (9%)
Query: 61 TDPAEKYISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRV 120
K +S++IP +NE+ LP + T + + YE+L+IDDGSSD + +
Sbjct: 1 EIHPIKKVSVVIPVYNEQESLPELIRRTTAACESLGKE-----YEILLIDDGSSDNSAEM 55
Query: 121 AFDFVRKYTVDNVRII--LLGRNHGKGEAIRKGMLHSRGELLLMLDAD 166
V + I+ LL RN+G+ AI G H G+L++ LDAD
Sbjct: 56 ---LVEAAQAPDSHIVAILLNRNYGQHSAIMAGFSHVTGDLIITLDAD 100
|
Length = 325 |
| >gnl|CDD|215385 PLN02726, PLN02726, dolichyl-phosphate beta-D-mannosyltransferase | Back alignment and domain information |
|---|
Score = 63.2 bits (154), Expect = 1e-11
Identities = 53/227 (23%), Positives = 100/227 (44%), Gaps = 28/227 (12%)
Query: 69 SLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKY 128
S+I+P +NE + + YL +A +D +E++++DDGS DGT+ V + Y
Sbjct: 12 SIIVPTYNERLNIA-----LIVYLIFKALQDVK-DFEIIVVDDGSPDGTQDVVKQLQKVY 65
Query: 129 TVDNVRIILLGRNHGKGEAIRKGMLHSRGELLLMLDADGATKVTDLEKLESQIHAVGRKE 188
D + + G G A G+ H+ G+ ++++DA DL + + +K+
Sbjct: 66 GEDRILLRPRPGKLGLGTAYIHGLKHASGDFVVIMDA-------DLSHHPKYLPSFIKKQ 118
Query: 189 YNHGDSVTVDSTFRISDIPIAAFGSRAHLEEKALATRKWYRNFLMKGFHLVVILTAGPGI 248
G + V T + + + R L + N L + +L PG+
Sbjct: 119 RETGADI-VTGTRYVKGGGVHGWDLRRKLTSRG-------ANVLAQ-----TLL--WPGV 163
Query: 249 RDTQCGFKMFTRAAARKLFTNIRLKRWCFDVELVYLCKRFGIPIIEI 295
D F+++ R+A L +++ K + F +E++ R G I E+
Sbjct: 164 SDLTGSFRLYKRSALEDLVSSVVSKGYVFQMEIIVRASRKGYRIEEV 210
|
Length = 243 |
| >gnl|CDD|133016 cd02525, Succinoglycan_BP_ExoA, ExoA is involved in the biosynthesis of succinoglycan | Back alignment and domain information |
|---|
Score = 63.0 bits (154), Expect = 2e-11
Identities = 34/103 (33%), Positives = 56/103 (54%), Gaps = 15/103 (14%)
Query: 68 ISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRK 127
+S+IIP NEE + L+ LN Q KD E++++D GS+DGT+ + V++
Sbjct: 2 VSIIIPVRNEEKYIEELLESLLN---QSYPKDL---IEIIVVDGGSTDGTR----EIVQE 51
Query: 128 YTVDNVRIILL---GRNHGKGEAIRKGMLHSRGELLLMLDADG 167
Y + RI L+ R G I G+ +SRG++++ +DA
Sbjct: 52 YAAKDPRIRLIDNPKRIQSAGLNI--GIRNSRGDIIIRVDAHA 92
|
Succinoglycan Biosynthesis Protein ExoA catalyzes the formation of a beta-1,3 linkage of the second sugar (glucose) of the succinoglycan with the galactose on the lipid carrie. Succinoglycan is an acidic exopolysaccharide that is important for invasion of the nodules. Succinoglycan is a high-molecular-weight polymer composed of repeating octasaccharide units. These units are synthesized on membrane-bound isoprenoid lipid carriers, beginning with galactose followed by seven glucose molecules, and modified by the addition of acetate, succinate, and pyruvate. ExoA is a membrane protein with a transmembrance domain at c-terminus. Length = 249 |
| >gnl|CDD|133035 cd04192, GT_2_like_e, Subfamily of Glycosyltransferase Family GT2 of unknown function | Back alignment and domain information |
|---|
Score = 56.9 bits (138), Expect = 2e-09
Identities = 29/101 (28%), Positives = 51/101 (50%), Gaps = 13/101 (12%)
Query: 70 LIIPAFNEEHRLPGALD--ETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRK 127
++I A NE LP L L+Y K+K +EV+++DD S+DGT ++ +F
Sbjct: 1 VVIAARNEAENLPRLLQSLSALDY-----PKEK---FEVILVDDHSTDGTVQIL-EFAAA 51
Query: 128 YTVDNVRIILLGRNH--GKGEAIRKGMLHSRGELLLMLDAD 166
++I+ R GK A+ + ++G+ ++ DAD
Sbjct: 52 KPNFQLKILNNSRVSISGKKNALTTAIKAAKGDWIVTTDAD 92
|
GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families. Length = 229 |
| >gnl|CDD|234532 TIGR04283, glyco_like_mftF, transferase 2, rSAM/selenodomain-associated | Back alignment and domain information |
|---|
Score = 52.5 bits (127), Expect = 4e-08
Identities = 30/99 (30%), Positives = 46/99 (46%), Gaps = 18/99 (18%)
Query: 68 ISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRK 127
+S+IIP NE LP E L LQ EV+++D GS+DGT +A
Sbjct: 1 LSIIIPVLNEAATLP----ELLADLQALPG-----DAEVIVVDGGSTDGTVEIARSL--- 48
Query: 128 YTVDNVRIILLGRNHGKGEAIRKGMLHSRGELLLMLDAD 166
++I + G+ + G ++G++LL L AD
Sbjct: 49 ----GAKVIHSPK--GRARQMNAGAALAKGDILLFLHAD 81
|
This enzyme may transfer a nucleotide, or it sugar moiety, as part of a biosynthetic pathway. Other proposed members of the pathway include another transferase (TIGR04282), a phosphoesterase, and a radical SAM enzyme (TIGR04167) whose C-terminal domain (pfam12345) frequently contains a selenocysteine [Unknown function, Enzymes of unknown specificity]. Length = 220 |
| >gnl|CDD|133013 cd02522, GT_2_like_a, GT_2_like_a represents a glycosyltransferase family-2 subfamily with unknown function | Back alignment and domain information |
|---|
Score = 52.6 bits (127), Expect = 5e-08
Identities = 29/99 (29%), Positives = 45/99 (45%), Gaps = 17/99 (17%)
Query: 68 ISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRK 127
+S+IIP NE LP L L++ E++++D GS+DGT +A
Sbjct: 1 LSIIIPTLNEAENLPR----LLASLRRLNPLPL----EIIVVDGGSTDGTVAIARSA--- 49
Query: 128 YTVDNVRIILLGRNHGKGEAIRKGMLHSRGELLLMLDAD 166
V +I + G+ + G +RG+ LL L AD
Sbjct: 50 ----GVVVISSPK--GRARQMNAGAAAARGDWLLFLHAD 82
|
Glycosyltransferase family 2 (GT-2) subfamily of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families. Length = 221 |
| >gnl|CDD|237556 PRK13915, PRK13915, putative glucosyl-3-phosphoglycerate synthase; Provisional | Back alignment and domain information |
|---|
Score = 53.0 bits (128), Expect = 6e-08
Identities = 30/103 (29%), Positives = 52/103 (50%), Gaps = 14/103 (13%)
Query: 68 ISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRK 127
+S+++PA NEE G + +++ L D E+++ID GS+D T A
Sbjct: 33 VSVVLPALNEE-ETVGKVVDSIRPLLMEPLVD-----ELIVIDSGSTDATAERA----AA 82
Query: 128 Y--TVDNVRIIL--LGRNHGKGEAIRKGMLHSRGELLLMLDAD 166
V + IL L GKGEA+ + + + G++++ +DAD
Sbjct: 83 AGARVVSREEILPELPPRPGKGEALWRSLAATTGDIVVFVDAD 125
|
Length = 306 |
| >gnl|CDD|184755 PRK14583, hmsR, N-glycosyltransferase; Provisional | Back alignment and domain information |
|---|
Score = 49.6 bits (118), Expect = 1e-06
Identities = 38/114 (33%), Positives = 58/114 (50%), Gaps = 16/114 (14%)
Query: 55 VPCPSVTDPAEKYISLIIPAFNEEHRLPGA-LDETLNYLQQRAAKDKSFT-YEVLIIDDG 112
VP P + +S+++P FNE G ET+ AA +++T EV+ I+DG
Sbjct: 66 VPAPELK--GHPLVSILVPCFNE-----GLNARETI-----HAALAQTYTNIEVIAINDG 113
Query: 113 SSDGTKRVAFDFVRKYTVDNVRIILLGRNHGKGEAIRKGMLHSRGELLLMLDAD 166
SSD T +V + + +R+I L N GK A+R G +R E L+ +D D
Sbjct: 114 SSDDTAQVLDALLAEDP--RLRVIHLAHNQGKAIALRMGAAAARSEYLVCIDGD 165
|
Length = 444 |
| >gnl|CDD|133005 cd02511, Beta4Glucosyltransferase, UDP-glucose LOS-beta-1,4 glucosyltransferase is required for biosynthesis of lipooligosaccharide | Back alignment and domain information |
|---|
Score = 46.5 bits (111), Expect = 5e-06
Identities = 21/100 (21%), Positives = 41/100 (41%), Gaps = 21/100 (21%)
Query: 68 ISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRK 127
+S++I NEE + L+ + K E++++D GS+D T +A ++
Sbjct: 2 LSVVIITKNEERNIERCLE---------SVKW--AVDEIIVVDSGSTDRTVEIA----KE 46
Query: 128 YTVDNVRIILL-GRNHGKGEAIRKGMLHSRGELLLMLDAD 166
Y ++ G + + + +L LDAD
Sbjct: 47 Y---GAKVYQRWWDGFGA--QRNFALELATNDWVLSLDAD 81
|
UDP-glucose: lipooligosaccharide (LOS) beta-1-4-glucosyltransferase catalyzes the addition of the first residue, glucose, of the lacto-N-neotetrase structure to HepI of the LOS inner core. LOS is the major constituent of the outer leaflet of the outer membrane of gram-positive bacteria. It consists of a short oligosaccharide chain of variable composition (alpha chain) attached to a branched inner core which is lined in turn to lipid A. Beta 1,4 glucosyltransferase is required to attach the alpha chain to the inner core. Length = 229 |
| >gnl|CDD|133029 cd04186, GT_2_like_c, Subfamily of Glycosyltransferase Family GT2 of unknown function | Back alignment and domain information |
|---|
Score = 44.5 bits (106), Expect = 1e-05
Identities = 24/96 (25%), Positives = 46/96 (47%), Gaps = 13/96 (13%)
Query: 71 IIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTV 130
II +N +L+ L +EV+++D+ S+DG+ + +R+
Sbjct: 2 IIVNYN-------SLEYLKACLDS-LLAQTYPDFEVIVVDNASTDGS----VELLREL-F 48
Query: 131 DNVRIILLGRNHGKGEAIRKGMLHSRGELLLMLDAD 166
VR+I G N G G +G+ ++G+ +L+L+ D
Sbjct: 49 PEVRLIRNGENLGFGAGNNQGIREAKGDYVLLLNPD 84
|
GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families. Length = 166 |
| >gnl|CDD|200433 TIGR04182, glyco_TIGR04182, glycosyltransferase, TIGR04182 family | Back alignment and domain information |
|---|
Score = 45.7 bits (109), Expect = 1e-05
Identities = 53/213 (24%), Positives = 91/213 (42%), Gaps = 40/213 (18%)
Query: 104 YEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNHGKGEAIRKGMLHSRGELLLML 163
++L+ID S+DGT+ +A +I G+ GKG+A+R+ +LML
Sbjct: 28 SDILVIDGNSTDGTQEIA------KEAGARVVIQSGK--GKGQAVREAFELIDAPYVLML 79
Query: 164 DADGATKVTDLEKLESQIHAVGRKEYNHGDSVTVDSTFRISDIPIAAFGSRAHLEEKALA 223
D DG D + L + + GR ++ G+ R +D+ AF +R +L
Sbjct: 80 DGDGTYLPADADALLEPLLS-GRADHVIGN--------RFADMEPGAF-TRLNL------ 123
Query: 224 TRKWYRNFLMKGFHLVVILTAGPGIRDTQCGFKMFTRAAARKLFTNIRLKRWCF--DVEL 281
N L + H G +RD G++ FTR + R++ L F + E+
Sbjct: 124 VGNRLINRLFRIIH-------GVDLRDILSGYRAFTRESIRRM----ELTETGFEIETEI 172
Query: 282 VYLCKRFGIPIIEISVNWSEIPGS---KVNPLS 311
C + + + + + + PG K+NPL
Sbjct: 173 AVECVKKNLRVEVVPITYRARPGGSDTKLNPLR 205
|
Members of this family are glycosyltransferases restricted to the archaea. All but two members are from species with the PGF-CTERM/archaeosortase A system, a proposed maturation system for exported, glycosylated proteins as are found often in S-layers. Length = 293 |
| >gnl|CDD|211965 TIGR04242, nodulat_NodC, chitooligosaccharide synthase NodC | Back alignment and domain information |
|---|
Score = 45.5 bits (108), Expect = 2e-05
Identities = 42/148 (28%), Positives = 68/148 (45%), Gaps = 13/148 (8%)
Query: 42 APAIFEDPSSLKQVPCPSVTDPAEKYISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKS 101
A + P+++ ++ + +I+P FNE+ P L E L + AA+D +
Sbjct: 24 AQVFYARPTTVPATSSDALPSDPLPSVDVIVPCFNED---PRTLSECLASI---AAQDYA 77
Query: 102 FTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVR--IILLGRNHGKGEAIRKGMLHSRGEL 159
V ++DDGS T R A V + R ILL +N GK +A + S G+L
Sbjct: 78 GKLRVYVVDDGS---TNRDALVPVHDAYASDPRFNFILLPKNVGKRKAQIAAIRRSSGDL 134
Query: 160 LLMLDADGATKVTDLEKLESQIH--AVG 185
+L +D+D + KL ++ AVG
Sbjct: 135 VLNVDSDTTIAPDVVTKLALKMRDPAVG 162
|
Members of this family are NodC, an N-acetylglucosaminyltransferase involved in the production of nodulation factors through which rhizobia establish symbioses with leguminous plants. Length = 395 |
| >gnl|CDD|222281 pfam13641, Glyco_tranf_2_3, Glycosyltransferase like family 2 | Back alignment and domain information |
|---|
Score = 43.5 bits (103), Expect = 5e-05
Identities = 27/102 (26%), Positives = 48/102 (47%), Gaps = 11/102 (10%)
Query: 68 ISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRK 127
+++++P +NE+ L L L R EV+++ DGS D T VA +
Sbjct: 3 VAVVVPTWNEDKVLGRTLRSILAQDYPR--------LEVIVVVDGSDDETLDVARELAAA 54
Query: 128 YTVDNVRIILLGRNHG---KGEAIRKGMLHSRGELLLMLDAD 166
Y V ++ R G K A+ + + + +L+++LDAD
Sbjct: 55 YPDVRVHVVRRPRPPGPTGKARALNEALRAIKSDLVVLLDAD 96
|
Members of this family of prokaryotic proteins include putative glucosyltransferase, which are involved in bacterial capsule biosynthesis. Length = 229 |
| >gnl|CDD|133055 cd06433, GT_2_WfgS_like, WfgS and WfeV are involved in O-antigen biosynthesis | Back alignment and domain information |
|---|
Score = 40.2 bits (95), Expect = 6e-04
Identities = 29/101 (28%), Positives = 48/101 (47%), Gaps = 19/101 (18%)
Query: 69 SLIIPAFNEEHRLPGALDETLN-YLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRK 127
S+I P +N+ L ET++ L Q E ++ID GS+DGT D ++K
Sbjct: 1 SIITPTYNQAETLE----ETIDSVLSQTYPN-----IEYIVIDGGSTDGT----VDIIKK 47
Query: 128 YTVDNVRIILLGRNHGKG--EAIRKGMLHSRGELLLMLDAD 166
Y I KG +A+ KG+ + G+++ L++D
Sbjct: 48 YEDKITYWI---SEPDKGIYDAMNKGIALATGDIIGFLNSD 85
|
Escherichia coli WfgS and Shigella dysenteriae WfeV are glycosyltransferase 2 family enzymes involved in O-antigen biosynthesis. GT-2 enzymes have GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families. Length = 202 |
| >gnl|CDD|182223 PRK10073, PRK10073, putative glycosyl transferase; Provisional | Back alignment and domain information |
|---|
Score = 40.0 bits (94), Expect = 0.001
Identities = 24/99 (24%), Positives = 46/99 (46%), Gaps = 11/99 (11%)
Query: 68 ISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRK 127
+S+IIP +N ++ + + Q E++I++DGS+D + +A +
Sbjct: 8 LSIIIPLYNAGKDFRAFME---SLIAQTWT-----ALEIIIVNDGSTDNSVEIAKHYAEN 59
Query: 128 YTVDNVRIILLGRNHGKGEAIRKGMLHSRGELLLMLDAD 166
Y +VR++ N G A G+ + G+ + DAD
Sbjct: 60 YP--HVRLL-HQANAGVSVARNTGLAVATGKYVAFPDAD 95
|
Length = 328 |
| >gnl|CDD|133058 cd06436, GlcNAc-1-P_transferase, N-acetyl-glucosamine transferase is involved in the synthesis of Poly-beta-1,6-N-acetyl-D-glucosamine | Back alignment and domain information |
|---|
Score = 38.9 bits (91), Expect = 0.001
Identities = 28/109 (25%), Positives = 46/109 (42%), Gaps = 20/109 (18%)
Query: 70 LIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYT 129
+++P NEE + TL ++K + VL+IDD S D T + +
Sbjct: 1 VLVPCLNEE----AVIQRTL----ASLLRNKP-NFLVLVIDDASDDDTAGIVRLAITDSR 51
Query: 130 VDNVRIILLGRNHGKGEAIRKG------MLHSRG-----ELLLMLDADG 167
V +R L GKG+A+ +L G ++ ++DADG
Sbjct: 52 VHLLRRHLPNARTGKGDALNAAYDQIRQILIEEGADPERVIIAVIDADG 100
|
N-acetyl-glucosamine transferase is responsible for the synthesis of bacteria Poly-beta-1,6-N-acetyl-D-glucosamine (PGA). Poly-beta-1,6-N-acetyl-D-glucosamine is a homopolymer that serves as an adhesion for the maintenance of biofilm structural stability in diverse eubacteria. N-acetyl-glucosamine transferase is the product of gene pgaC. Genetic analysis indicated that all four genes of the pgaABCD locus were required for the PGA production, pgaC being a glycosyltransferase. Length = 191 |
| >gnl|CDD|133039 cd04196, GT_2_like_d, Subfamily of Glycosyltransferase Family GT2 of unknown function | Back alignment and domain information |
|---|
Score = 39.2 bits (92), Expect = 0.001
Identities = 14/39 (35%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
Query: 105 EVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNHG 143
E++I DDGS+DGT + +++ K + +I G+N G
Sbjct: 29 ELIISDDGSTDGTVEIIKEYIDKDP-FIIILIRNGKNLG 66
|
GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families. Length = 214 |
| >gnl|CDD|182218 PRK10063, PRK10063, putative glycosyl transferase; Provisional | Back alignment and domain information |
|---|
Score = 39.0 bits (91), Expect = 0.002
Identities = 31/129 (24%), Positives = 60/129 (46%), Gaps = 12/129 (9%)
Query: 68 ISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRK 127
+S+I AF L G + +T L+ A+D ++E +++D GS+DGT+ +F+
Sbjct: 3 LSVITVAFRN---LEG-IVKTHASLRH-LAQDPGISFEWIVVDGGSNDGTR----EFLEN 53
Query: 128 YTVD-NVRIILLGRNHGKGEAIRKGMLHSRGELLLMLDADGATKVTDLEKLESQIHAVGR 186
N+R + ++G +A+ KG+ ++G L L++ D Q+
Sbjct: 54 LNGIFNLRFV-SEPDNGIYDAMNKGIAMAQGRFALFLNSGDIFHQ-DAANFVRQLKMQKD 111
Query: 187 KEYNHGDSV 195
GD++
Sbjct: 112 NAMIIGDAL 120
|
Length = 248 |
| >gnl|CDD|133038 cd04195, GT2_AmsE_like, GT2_AmsE_like is involved in exopolysaccharide amylovora biosynthesis | Back alignment and domain information |
|---|
Score = 38.4 bits (90), Expect = 0.002
Identities = 19/73 (26%), Positives = 37/73 (50%), Gaps = 4/73 (5%)
Query: 105 EVLIIDDGS-SDGTKRVAFDFVRKYTVDNVRIILLGRNHGKGEAIRKGMLHSRGELLLML 163
EV+++ DG + V +F RK ++++ L +N G G+A+ +G+ H + + +
Sbjct: 31 EVVLVKDGPVTQSLNEVLEEFKRKL---PLKVVPLEKNRGLGKALNEGLKHCTYDWVARM 87
Query: 164 DADGATKVTDLEK 176
D D + EK
Sbjct: 88 DTDDISLPDRFEK 100
|
AmsE is a glycosyltransferase involved in exopolysaccharide amylovora biosynthesis in Erwinia amylovora. Amylovara is one of the three exopolysaccharide produced by E. amylovora. Amylovara-deficient mutants are non-pathogenic. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Length = 201 |
| >gnl|CDD|132155 TIGR03111, glyc2_xrt_Gpos1, putative glycosyltransferase, exosortase G-associated | Back alignment and domain information |
|---|
Score = 39.3 bits (92), Expect = 0.002
Identities = 27/127 (21%), Positives = 59/127 (46%), Gaps = 22/127 (17%)
Query: 67 YISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYE---VLIIDDGSSDGTKRVAFD 123
I++IIP +N E L + + ++++ E +++ ++ S+D + +V
Sbjct: 50 DITIIIPVYNSEDTLFNCI---------ESIYNQTYPIELIDIILANNQSTDDSFQVFCR 100
Query: 124 FVRKYTVDNVRIILLGRNHGKGEAIRKGMLHSRGELLLMLDADG-----ATK--VTDLEK 176
++ + + + + GK +A+ + +S G+ ++ +D+DG A K VT E
Sbjct: 101 AQNEF--PGLSLRYMNSDQGKAKALNAAIYNSIGKYIIHIDSDGKLHKDAIKNMVTRFEN 158
Query: 177 LESQIHA 183
IHA
Sbjct: 159 -NPDIHA 164
|
Members of this protein family are probable glycosyltransferases of family 2, whose genes are near those for the exosortase homolog XrtG (TIGR03110), which is restricted to Gram-positive bacteria. Other genes in the conserved gene neighborhood include a 6-pyruvoyl tetrahydropterin synthase homolog (TIGR03112) and an uncharacterized intergral membrane protein (TIGR03766). Length = 439 |
| >gnl|CDD|133063 cd06913, beta3GnTL1_like, Beta 1, 3-N-acetylglucosaminyltransferase is essential for the formation of poly-N-acetyllactosamine | Back alignment and domain information |
|---|
Score = 37.8 bits (88), Expect = 0.004
Identities = 29/102 (28%), Positives = 46/102 (45%), Gaps = 13/102 (12%)
Query: 70 LIIPAFNEEHRLPGALDETL-NYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKY 128
+I+P N E LDE L + LQQ D T E+ + +D S+D + + + +K
Sbjct: 1 IILPVHNGEQ----WLDECLESVLQQ----DFEGTLELSVFNDASTDKSAEIIEKWRKKL 52
Query: 129 TVDNVRIILLGRNH----GKGEAIRKGMLHSRGELLLMLDAD 166
V +++ N G G A + + S G L LD+D
Sbjct: 53 EDSGVIVLVGSHNSPSPKGVGYAKNQAIAQSSGRYLCFLDSD 94
|
This family includes human Beta3GnTL1 and related eukaryotic proteins. Human Beta3GnTL1 is a putative beta-1,3-N-acetylglucosaminyltransferase. Beta3GnTL1 is expressed at various levels in most of tissues examined. Beta 1, 3-N-acetylglucosaminyltransferase has been found to be essential for the formation of poly-N-acetyllactosamine. Poly-N-acetyllactosamine is a unique carbohydrate composed of N-acetyllactosamine repeats. It is often an important part of cell-type-specific oligosaccharide structures and some functional oligosaccharides. It has been shown that the structure and biosynthesis of poly-N-acetyllactosamine display a dramatic change during development and oncogenesis. Several members of beta-1, 3-N-acetylglucosaminyltransferase have been identified. Length = 219 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 335 | |||
| PTZ00260 | 333 | dolichyl-phosphate beta-glucosyltransferase; Provi | 100.0 | |
| KOG2977 | 323 | consensus Glycosyltransferase [General function pr | 100.0 | |
| PLN02726 | 243 | dolichyl-phosphate beta-D-mannosyltransferase | 100.0 | |
| KOG2978 | 238 | consensus Dolichol-phosphate mannosyltransferase [ | 100.0 | |
| cd04188 | 211 | DPG_synthase DPG_synthase is involved in protein N | 100.0 | |
| PRK11204 | 420 | N-glycosyltransferase; Provisional | 100.0 | |
| PRK14583 | 444 | hmsR N-glycosyltransferase; Provisional | 100.0 | |
| PRK10714 | 325 | undecaprenyl phosphate 4-deoxy-4-formamido-L-arabi | 99.97 | |
| cd06442 | 224 | DPM1_like DPM1_like represents putative enzymes si | 99.97 | |
| TIGR03111 | 439 | glyc2_xrt_Gpos1 putative glycosyltransferase TIGR0 | 99.97 | |
| cd06427 | 241 | CESA_like_2 CESA_like_2 is a member of the cellulo | 99.96 | |
| cd02520 | 196 | Glucosylceramide_synthase Glucosylceramide synthas | 99.96 | |
| TIGR03472 | 373 | HpnI hopanoid biosynthesis associated glycosyl tra | 99.96 | |
| TIGR03469 | 384 | HonB hopene-associated glycosyltransferase HpnB. T | 99.95 | |
| PRK11498 | 852 | bcsA cellulose synthase catalytic subunit; Provisi | 99.95 | |
| cd06437 | 232 | CESA_CaSu_A2 Cellulose synthase catalytic subunit | 99.95 | |
| TIGR03030 | 713 | CelA cellulose synthase catalytic subunit (UDP-for | 99.95 | |
| cd06421 | 234 | CESA_CelA_like CESA_CelA_like are involved in the | 99.94 | |
| cd02510 | 299 | pp-GalNAc-T pp-GalNAc-T initiates the formation of | 99.94 | |
| COG1215 | 439 | Glycosyltransferases, probably involved in cell wa | 99.94 | |
| cd06435 | 236 | CESA_NdvC_like NdvC_like proteins in this family a | 99.94 | |
| PRK14716 | 504 | bacteriophage N4 adsorption protein B; Provisional | 99.93 | |
| cd06439 | 251 | CESA_like_1 CESA_like_1 is a member of the cellulo | 99.93 | |
| cd04184 | 202 | GT2_RfbC_Mx_like Myxococcus xanthus RfbC like prot | 99.93 | |
| PRK10073 | 328 | putative glycosyl transferase; Provisional | 99.93 | |
| cd04179 | 185 | DPM_DPG-synthase_like DPM_DPG-synthase_like is a m | 99.93 | |
| PRK13915 | 306 | putative glucosyl-3-phosphoglycerate synthase; Pro | 99.93 | |
| cd04187 | 181 | DPM1_like_bac Bacterial DPM1_like enzymes are rela | 99.93 | |
| PF13641 | 228 | Glyco_tranf_2_3: Glycosyltransferase like family 2 | 99.92 | |
| cd02525 | 249 | Succinoglycan_BP_ExoA ExoA is involved in the bios | 99.92 | |
| cd06913 | 219 | beta3GnTL1_like Beta 1, 3-N-acetylglucosaminyltran | 99.92 | |
| cd04195 | 201 | GT2_AmsE_like GT2_AmsE_like is involved in exopoly | 99.92 | |
| cd06434 | 235 | GT2_HAS Hyaluronan synthases catalyze polymerizati | 99.92 | |
| cd04192 | 229 | GT_2_like_e Subfamily of Glycosyltransferase Famil | 99.92 | |
| PRK10063 | 248 | putative glycosyl transferase; Provisional | 99.91 | |
| cd04196 | 214 | GT_2_like_d Subfamily of Glycosyltransferase Famil | 99.91 | |
| cd06433 | 202 | GT_2_WfgS_like WfgS and WfeV are involved in O-ant | 99.91 | |
| cd04185 | 202 | GT_2_like_b Subfamily of Glycosyltransferase Famil | 99.9 | |
| cd04191 | 254 | Glucan_BSP_ModH Glucan_BSP_ModH catalyzes the elon | 99.9 | |
| PRK05454 | 691 | glucosyltransferase MdoH; Provisional | 99.9 | |
| PRK11234 | 727 | nfrB bacteriophage N4 adsorption protein B; Provis | 99.9 | |
| PRK10018 | 279 | putative glycosyl transferase; Provisional | 99.9 | |
| cd06438 | 183 | EpsO_like EpsO protein participates in the methano | 99.89 | |
| cd06420 | 182 | GT2_Chondriotin_Pol_N N-terminal domain of Chondro | 99.88 | |
| PF00535 | 169 | Glycos_transf_2: Glycosyl transferase family 2; In | 99.88 | |
| cd04186 | 166 | GT_2_like_c Subfamily of Glycosyltransferase Famil | 99.88 | |
| cd02522 | 221 | GT_2_like_a GT_2_like_a represents a glycosyltrans | 99.88 | |
| cd04190 | 244 | Chitin_synth_C C-terminal domain of Chitin Synthas | 99.88 | |
| cd02526 | 237 | GT2_RfbF_like RfbF is a putative dTDP-rhamnosyl tr | 99.87 | |
| COG1216 | 305 | Predicted glycosyltransferases [General function p | 99.87 | |
| PRK15489 | 703 | nfrB bacteriophage N4 adsorption protein B; Provis | 99.86 | |
| cd06436 | 191 | GlcNAc-1-P_transferase N-acetyl-glucosamine transf | 99.86 | |
| TIGR01556 | 281 | rhamnosyltran L-rhamnosyltransferase. Rhamnolipids | 99.84 | |
| PF10111 | 281 | Glyco_tranf_2_2: Glycosyltransferase like family 2 | 99.84 | |
| cd06423 | 180 | CESA_like CESA_like is the cellulose synthase supe | 99.82 | |
| cd02511 | 229 | Beta4Glucosyltransferase UDP-glucose LOS-beta-1,4 | 99.72 | |
| cd00761 | 156 | Glyco_tranf_GTA_type Glycosyltransferase family A | 99.69 | |
| COG0463 | 291 | WcaA Glycosyltransferases involved in cell wall bi | 99.69 | |
| KOG3736 | 578 | consensus Polypeptide N-acetylgalactosaminyltransf | 99.42 | |
| KOG2547 | 431 | consensus Ceramide glucosyltransferase [Lipid tran | 99.42 | |
| KOG3737 | 603 | consensus Predicted polypeptide N-acetylgalactosam | 99.32 | |
| KOG3738 | 559 | consensus Predicted polypeptide N-acetylgalactosam | 99.3 | |
| PF13506 | 175 | Glyco_transf_21: Glycosyl transferase family 21 | 99.26 | |
| COG2943 | 736 | MdoH Membrane glycosyltransferase [Cell envelope b | 99.22 | |
| PLN02893 | 734 | Cellulose synthase-like protein | 99.0 | |
| PF13632 | 193 | Glyco_trans_2_3: Glycosyl transferase family group | 98.96 | |
| cd02514 | 334 | GT13_GLCNAC-TI GT13_GLCNAC-TI is involved in an es | 98.93 | |
| PF03142 | 527 | Chitin_synth_2: Chitin synthase; InterPro: IPR0048 | 98.88 | |
| PF13712 | 217 | Glyco_tranf_2_5: Glycosyltransferase like family; | 98.8 | |
| cd00899 | 219 | b4GalT Beta-4-Galactosyltransferase is involved in | 98.24 | |
| PF09488 | 381 | Osmo_MPGsynth: Mannosyl-3-phosphoglycerate synthas | 98.05 | |
| PF13704 | 97 | Glyco_tranf_2_4: Glycosyl transferase family 2 | 98.02 | |
| PLN02189 | 1040 | cellulose synthase | 98.01 | |
| KOG2571 | 862 | consensus Chitin synthase/hyaluronan synthase (gly | 98.01 | |
| TIGR02460 | 381 | osmo_MPGsynth mannosyl-3-phosphoglycerate synthase | 97.98 | |
| PF05679 | 499 | CHGN: Chondroitin N-acetylgalactosaminyltransferas | 97.88 | |
| PRK14503 | 393 | mannosyl-3-phosphoglycerate synthase; Provisional | 97.83 | |
| COG4092 | 346 | Predicted glycosyltransferase involved in capsule | 97.75 | |
| PLN02195 | 977 | cellulose synthase A | 97.64 | |
| PF03071 | 434 | GNT-I: GNT-I family; InterPro: IPR004139 The biosy | 97.59 | |
| PLN02638 | 1079 | cellulose synthase A (UDP-forming), catalytic subu | 97.54 | |
| PRK14502 | 694 | bifunctional mannosyl-3-phosphoglycerate synthase/ | 97.21 | |
| PLN02190 | 756 | cellulose synthase-like protein | 97.2 | |
| PF06306 | 347 | CgtA: Beta-1,4-N-acetylgalactosaminyltransferase ( | 97.1 | |
| PF03452 | 269 | Anp1: Anp1; InterPro: IPR005109 The members of thi | 97.05 | |
| PLN02436 | 1094 | cellulose synthase A | 96.83 | |
| KOG3588 | 494 | consensus Chondroitin synthase 1 [Carbohydrate tra | 96.81 | |
| KOG3916 | 372 | consensus UDP-Gal:glucosylceramide beta-1,4-galact | 96.78 | |
| PLN02400 | 1085 | cellulose synthase | 96.62 | |
| PF11316 | 234 | Rhamno_transf: Putative rhamnosyl transferase ; In | 96.49 | |
| PLN02915 | 1044 | cellulose synthase A [UDP-forming], catalytic subu | 96.32 | |
| PF11735 | 241 | CAP59_mtransfer: Cryptococcal mannosyltransferase | 95.58 | |
| PF03552 | 720 | Cellulose_synt: Cellulose synthase; InterPro: IPR0 | 95.31 | |
| PF09258 | 247 | Glyco_transf_64: Glycosyl transferase family 64 do | 95.11 | |
| PF13733 | 136 | Glyco_transf_7N: N-terminal region of glycosyl tra | 95.09 | |
| PF01762 | 195 | Galactosyl_T: Galactosyltransferase; InterPro: IPR | 95.06 | |
| PF12804 | 160 | NTP_transf_3: MobA-like NTP transferase domain; PD | 94.92 | |
| PLN02248 | 1135 | cellulose synthase-like protein | 94.68 | |
| cd02508 | 200 | ADP_Glucose_PP ADP-glucose pyrophosphorylase is in | 94.67 | |
| PF04666 | 297 | Glyco_transf_54: N-Acetylglucosaminyltransferase-I | 94.62 | |
| cd02540 | 229 | GT2_GlmU_N_bac N-terminal domain of bacterial GlmU | 94.62 | |
| PLN02917 | 293 | CMP-KDO synthetase | 94.53 | |
| cd00218 | 223 | GlcAT-I Beta1,3-glucuronyltransferase I (GlcAT-I) | 94.15 | |
| cd02516 | 218 | CDP-ME_synthetase CDP-ME synthetase is involved in | 93.96 | |
| cd04182 | 186 | GT_2_like_f GT_2_like_f is a subfamily of the glyc | 93.93 | |
| PF03214 | 348 | RGP: Reversibly glycosylated polypeptide; InterPro | 93.89 | |
| PF02434 | 252 | Fringe: Fringe-like; InterPro: IPR003378 The Notch | 93.55 | |
| PF02709 | 78 | Glyco_transf_7C: N-terminal domain of galactosyltr | 93.5 | |
| TIGR03202 | 190 | pucB xanthine dehydrogenase accessory protein pucB | 93.2 | |
| PLN02458 | 346 | transferase, transferring glycosyl groups | 93.08 | |
| TIGR00453 | 217 | ispD 2-C-methyl-D-erythritol 4-phosphate cytidylyl | 92.6 | |
| PF01644 | 163 | Chitin_synth_1: Chitin synthase; InterPro: IPR0048 | 92.58 | |
| COG2068 | 199 | Uncharacterized MobA-related protein [General func | 92.3 | |
| cd04181 | 217 | NTP_transferase NTP_transferases catalyze the tran | 92.25 | |
| KOG1476 | 330 | consensus Beta-1,3-glucuronyltransferase B3GAT1/SQ | 91.99 | |
| PF11397 | 343 | GlcNAc: Glycosyltransferase (GlcNAc); InterPro: IP | 91.97 | |
| PRK13385 | 230 | 2-C-methyl-D-erythritol 4-phosphate cytidylyltrans | 91.81 | |
| TIGR00466 | 238 | kdsB 3-deoxy-D-manno-octulosonate cytidylyltransfe | 91.72 | |
| TIGR03310 | 188 | matur_ygfJ molybdenum hydroxylase accessory protei | 91.7 | |
| PRK14352 | 482 | glmU bifunctional N-acetylglucosamine-1-phosphate | 91.08 | |
| cd02503 | 181 | MobA MobA catalyzes the formation of molybdopterin | 91.04 | |
| PF05045 | 498 | RgpF: Rhamnan synthesis protein F; InterPro: IPR00 | 90.54 | |
| KOG1413 | 411 | consensus N-acetylglucosaminyltransferase I [Carbo | 90.25 | |
| PF00483 | 248 | NTP_transferase: Nucleotidyl transferase This Pros | 90.25 | |
| cd06915 | 223 | NTP_transferase_WcbM_like WcbM_like is a subfamily | 90.08 | |
| cd02509 | 274 | GDP-M1P_Guanylyltransferase GDP-M1P_Guanylyltransf | 90.07 | |
| cd02518 | 233 | GT2_SpsF SpsF is a glycosyltrnasferase implicated | 89.97 | |
| TIGR03552 | 195 | F420_cofC 2-phospho-L-lactate guanylyltransferase | 89.63 | |
| PLN03180 | 346 | reversibly glycosylated polypeptide; Provisional | 89.52 | |
| cd06422 | 221 | NTP_transferase_like_1 NTP_transferase_like_1 is a | 89.34 | |
| COG1209 | 286 | RfbA dTDP-glucose pyrophosphorylase [Cell envelope | 89.16 | |
| TIGR01173 | 451 | glmU UDP-N-acetylglucosamine diphosphorylase/gluco | 89.15 | |
| KOG1022 | 691 | consensus Acetylglucosaminyltransferase EXT2/exost | 89.15 | |
| PRK00317 | 193 | mobA molybdopterin-guanine dinucleotide biosynthes | 89.14 | |
| PF01697 | 285 | Glyco_transf_92: Glycosyltransferase family 92; In | 88.43 | |
| PRK02726 | 200 | molybdopterin-guanine dinucleotide biosynthesis pr | 87.84 | |
| TIGR02665 | 186 | molyb_mobA molybdopterin-guanine dinucleotide bios | 87.33 | |
| cd02523 | 229 | PC_cytidylyltransferase Phosphocholine cytidylyltr | 87.3 | |
| cd04189 | 236 | G1P_TT_long G1P_TT_long represents the long form o | 87.11 | |
| PRK14355 | 459 | glmU bifunctional N-acetylglucosamine-1-phosphate | 86.96 | |
| cd02513 | 223 | CMP-NeuAc_Synthase CMP-NeuAc_Synthase activates N- | 86.7 | |
| cd06425 | 233 | M1P_guanylylT_B_like_N N-terminal domain of the M1 | 86.64 | |
| PLN02728 | 252 | 2-C-methyl-D-erythritol 4-phosphate cytidylyltrans | 86.51 | |
| COG1213 | 239 | Predicted sugar nucleotidyltransferases [Cell enve | 86.46 | |
| TIGR00454 | 183 | conserved hypothetical protein TIGR00454. At this | 86.38 | |
| cd02517 | 239 | CMP-KDO-Synthetase CMP-KDO synthetase catalyzes th | 86.0 | |
| cd06428 | 257 | M1P_guanylylT_A_like_N N-terminal domain of M1P_gu | 85.59 | |
| PLN03153 | 537 | hypothetical protein; Provisional | 85.48 | |
| PRK15480 | 292 | glucose-1-phosphate thymidylyltransferase RfbA; Pr | 85.37 | |
| cd06431 | 280 | GT8_LARGE_C LARGE catalytic domain has closest hom | 85.32 | |
| TIGR03584 | 222 | PseF pseudaminic acid CMP-transferase. The sequenc | 85.09 | |
| PRK14360 | 450 | glmU bifunctional N-acetylglucosamine-1-phosphate | 84.51 | |
| PRK00155 | 227 | ispD 2-C-methyl-D-erythritol 4-phosphate cytidylyl | 84.37 | |
| TIGR01207 | 286 | rmlA glucose-1-phosphate thymidylyltransferase, sh | 84.14 | |
| PRK13368 | 238 | 3-deoxy-manno-octulosonate cytidylyltransferase; P | 83.46 | |
| PRK14358 | 481 | glmU bifunctional N-acetylglucosamine-1-phosphate | 83.28 | |
| PRK14353 | 446 | glmU bifunctional N-acetylglucosamine-1-phosphate | 82.75 | |
| KOG2287 | 349 | consensus Galactosyltransferases [Carbohydrate tra | 82.14 | |
| PRK14354 | 458 | glmU bifunctional N-acetylglucosamine-1-phosphate | 81.28 | |
| PRK05450 | 245 | 3-deoxy-manno-octulosonate cytidylyltransferase; P | 80.91 | |
| PF09837 | 122 | DUF2064: Uncharacterized protein conserved in bact | 80.75 |
| >PTZ00260 dolichyl-phosphate beta-glucosyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-40 Score=302.49 Aligned_cols=255 Identities=46% Similarity=0.844 Sum_probs=222.2
Q ss_pred CCCCceEEEEEeccCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCcchHHHHHHHHHHc--CCCcEEEEEcC
Q 019818 62 DPAEKYISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKY--TVDNVRIILLG 139 (335)
Q Consensus 62 ~~~~~~vsViip~~ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~--~~~~i~vi~~~ 139 (335)
....|.+|||||+|||++.|+++|+++.+++.+...+++..++|||||||||+|+|.++++++.+++ +..+++++..+
T Consensus 66 ~~~~~~isVVIP~yNe~~~i~~~L~~l~~~~~~~~~~~~~~~~EIIVVDDgStD~T~~i~~~~~~~~~~~~~~i~vi~~~ 145 (333)
T PTZ00260 66 KDSDVDLSIVIPAYNEEDRLPKMLKETIKYLESRSRKDPKFKYEIIIVNDGSKDKTLKVAKDFWRQNINPNIDIRLLSLL 145 (333)
T ss_pred CCCCeEEEEEEeeCCCHHHHHHHHHHHHHHHHhhhccCCCCCEEEEEEeCCCCCchHHHHHHHHHhcCCCCCcEEEEEcC
Confidence 4567899999999999999999999998877643222345589999999999999999999988775 33369999999
Q ss_pred CCCChHHHHHHHHHhcCCCEEEEEeCCCCCCcchHHHHHHHHHHhccccccCCCcccccccccccCCCeeeeecchhhhh
Q 019818 140 RNHGKGEAIRKGMLHSRGELLLMLDADGATKVTDLEKLESQIHAVGRKEYNHGDSVTVDSTFRISDIPIAAFGSRAHLEE 219 (335)
Q Consensus 140 ~~~Gk~~aln~g~~~a~~d~v~~~DaD~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~g~~~~~~~ 219 (335)
.|.|+++|+|.|++.++||+|+++|+|+..+++.+.++++.+.+..+.++ ++|+|+|.....
T Consensus 146 ~N~G~~~A~~~Gi~~a~gd~I~~~DaD~~~~~~~l~~l~~~l~~~~~~~~------------------dvV~GsR~~~~~ 207 (333)
T PTZ00260 146 RNKGKGGAVRIGMLASRGKYILMVDADGATDIDDFDKLEDIMLKIEQNGL------------------GIVFGSRNHLVD 207 (333)
T ss_pred CCCChHHHHHHHHHHccCCEEEEEeCCCCCCHHHHHHHHHHHHHhhccCC------------------ceEEeecccccc
Confidence 99999999999999999999999999999999999999999976333333 799999975432
Q ss_pred H-hhhhhhhhHHHHHHHHHHHHHHHhCCCCccCCCceeeeeHHHHHHhhhhhhhccccchHHHHHHhHHcCCCEEEeeeE
Q 019818 220 K-ALATRKWYRNFLMKGFHLVVILTAGPGIRDTQCGFKMFTRAAARKLFTNIRLKRWCFDVELVYLCKRFGIPIIEISVN 298 (335)
Q Consensus 220 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~r~~l~~i~~~~~~~~~~~D~el~~r~~~~G~~i~~~p~~ 298 (335)
+ ....+++++++.+..++.+.+.+.+..+.|.+||+++|+|++++.++......+|.||.|+..++.+.|++|.++|+.
T Consensus 208 ~~~~~~~~~~r~~~~~~~~~l~~~~~~~~i~D~~~Gfk~~~r~~~~~i~~~~~~~~~~fd~Ell~~a~~~g~~I~EvPv~ 287 (333)
T PTZ00260 208 SDVVAKRKWYRNILMYGFHFIVNTICGTNLKDTQCGFKLFTRETARIIFPSLHLERWAFDIEIVMIAQKLNLPIAEVPVN 287 (333)
T ss_pred CcccccCcHHHHHHHHHHHHHHHHHcCCCcccCCCCeEEEeHHHHHHHhhhccccCccchHHHHHHHHHcCCCEEEEcee
Confidence 2 344667899999999999999999999999999999999999999976666678899999999999999999999999
Q ss_pred EEecCCCccc-ccchHHHHHHHHHHHhhhhccceeec
Q 019818 299 WSEIPGSKVN-PLSIPNMLWELALMSVGYRTGMWKVR 334 (335)
Q Consensus 299 ~~~~~~s~~~-~~~~~~~~~~~~~i~~~y~~~~~k~~ 334 (335)
|+++++|+.+ ....+++++..+.+++.|+.+.|+++
T Consensus 288 ~~~~~~Sk~~~~~~~~~~~~~l~~~~~~y~~~~~~~~ 324 (333)
T PTZ00260 288 WTEVEGSKLNVISASIQMARDILLVRSFYLLGIWKVK 324 (333)
T ss_pred eEECCCCeechHHHHHHHHHHHHHHHHHHhcCeeecc
Confidence 9998888887 56789999999999999999999987
|
|
| >KOG2977 consensus Glycosyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-37 Score=264.41 Aligned_cols=301 Identities=49% Similarity=0.795 Sum_probs=256.4
Q ss_pred HHHHHHHHHHHHHHhhccccccccCCccccCCCCCCCCCCCCCCCCC-CceEEEEEeccCCCCChHHHHHHHHHHHHHhh
Q 019818 18 ILFGLISAIIFEAYRRRDNHAHIEAPAIFEDPSSLKQVPCPSVTDPA-EKYISLIIPAFNEEHRLPGALDETLNYLQQRA 96 (335)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~vsViip~~ne~~~l~~~l~sl~~~~~~~~ 96 (335)
.++.++..+++..+..++...+......+..|-+.....+|+..++. ...+|||||+|||+..|+..++.....++...
T Consensus 18 v~~~~l~~~l~~~~~~r~~~e~~e~ei~~~d~g~~k~~~lp~~~d~~~~~~lsVIVpaynE~~ri~~mldeav~~le~ry 97 (323)
T KOG2977|consen 18 VLLKFLSVYLFESHLPRPALENEETEITLDDPGSIKSRTLPNIRDSPEKMYLSVIVPAYNEEGRIGAMLDEAVDYLEKRY 97 (323)
T ss_pred HHHHHHHHHHhhccCCCccccccceEEEEcCCCCccceeCcccccChhhceeEEEEecCCcccchHHHHHHHHHHHHHHh
Confidence 33344444444466666666666666667777666666677666553 34899999999999999999999988888755
Q ss_pred hcCCCCceEEEEEECCCCcchHHHHHHHHHHcCCCcEEEEEcCCCCChHHHHHHHHHhcCCCEEEEEeCCCCCCcchHHH
Q 019818 97 AKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNHGKGEAIRKGMLHSRGELLLMLDADGATKVTDLEK 176 (335)
Q Consensus 97 ~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~vi~~~~~~Gk~~aln~g~~~a~~d~v~~~DaD~~~~~~~l~~ 176 (335)
...+...+||+||||||+|+|.+++-+++.++...+++|+...+|+||++|...|+.+++|+++++.|||....-..++.
T Consensus 98 ~~~~~F~~eiiVvddgs~d~T~~~a~k~s~K~~~d~irV~~l~~nrgKGgAvR~g~l~~rG~~ilfadAdGaTkf~d~ek 177 (323)
T KOG2977|consen 98 LSDKSFTYEIIVVDDGSTDSTVEVALKFSRKLGDDNIRVIKLKKNRGKGGAVRKGMLSSRGQKILFADADGATKFADLEK 177 (323)
T ss_pred ccCCCCceeEEEeCCCCchhHHHHHHHHHHHcCcceEEEeehhccCCCCcceehhhHhccCceEEEEcCCCCccCCCHHH
Confidence 44555789999999999999999999999888877999999999999999999999999999999999999877667777
Q ss_pred HHHHHHHhccccccCCCcccccccccccCCCeeeeecchhhhh-HhhhhhhhhHHHHHHHHHHHHHHHhCCCCccCCCce
Q 019818 177 LESQIHAVGRKEYNHGDSVTVDSTFRISDIPIAAFGSRAHLEE-KALATRKWYRNFLMKGFHLVVILTAGPGIRDTQCGF 255 (335)
Q Consensus 177 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 255 (335)
+...+.+-..++ ...++++|+|.+... +....+++.+.++..+++.+...+....+.|.+|||
T Consensus 178 Le~al~~~~~p~----------------~r~~va~GsrahLe~~~a~a~rs~~r~iLM~gFH~lv~~~a~rsI~DTQcgf 241 (323)
T KOG2977|consen 178 LEKALNDKAGPG----------------PRDDVACGSRAHLENTEAVAKRSVIRNILMYGFHKLVWIFAIRSIRDTQCGF 241 (323)
T ss_pred HHHHHHhhcCCC----------------CCCceeecCHHHhhccHHHHHHhHhhHHHHHHHHHHHHHHhcCcccccchhH
Confidence 777775321111 112689999999877 888899999999999999999999999999999999
Q ss_pred eeeeHHHHHHhhhhhhhccccchHHHHHHhHHcCCCEEEeeeEEEecCCCccc-ccchHHHHHHHHHHHhhhhccceeec
Q 019818 256 KMFTRAAARKLFTNIRLKRWCFDVELVYLCKRFGIPIIEISVNWSEIPGSKVN-PLSIPNMLWELALMSVGYRTGMWKVR 334 (335)
Q Consensus 256 ~~~~r~~l~~i~~~~~~~~~~~D~el~~r~~~~G~~i~~~p~~~~~~~~s~~~-~~~~~~~~~~~~~i~~~y~~~~~k~~ 334 (335)
++|+|.+.+++++.....+|.||.|+.+.+.+.+..++++|+.|+|-++|+.. .+.+++|.++...++++|..+.|++.
T Consensus 242 klftR~aa~~if~~lh~e~W~fdvEll~La~~~~ipi~ei~v~w~EIdgSKi~~~~s~~~m~~dlv~i~v~y~~g~w~~~ 321 (323)
T KOG2977|consen 242 KLFTRAAARRIFPWLHVERWAFDVELLYLAKRFTIPIKEIPVEWTEIDGSKITPVWSWLQMGSDLVLIRVRYLTGIWKRT 321 (323)
T ss_pred HHhHHHHHHhhcchhheeeeeccHHHHHHHHHcCCCcEEeeeEEEEcCCceeehHHHHHHHhhhhheEeeehhcceEEec
Confidence 99999999999999999999999999999999999999999999999999998 58999999999999999999999863
|
|
| >PLN02726 dolichyl-phosphate beta-D-mannosyltransferase | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-34 Score=251.64 Aligned_cols=230 Identities=23% Similarity=0.355 Sum_probs=188.2
Q ss_pred CCCceEEEEEeccCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCcchHHHHHHHHHHcCCCcEEEEEcCCCC
Q 019818 63 PAEKYISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNH 142 (335)
Q Consensus 63 ~~~~~vsViip~~ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~vi~~~~~~ 142 (335)
...|++|||||+|||++.|+.+++++.+.+. ...++|||||||||+|+|.++++++.++++...+.++..++|.
T Consensus 6 ~~~~~vsVvIp~yne~~~l~~~l~~l~~~~~------~~~~~eiivvDdgS~D~t~~i~~~~~~~~~~~~v~~~~~~~n~ 79 (243)
T PLN02726 6 EGAMKYSIIVPTYNERLNIALIVYLIFKALQ------DVKDFEIIVVDDGSPDGTQDVVKQLQKVYGEDRILLRPRPGKL 79 (243)
T ss_pred CCCceEEEEEccCCchhhHHHHHHHHHHHhc------cCCCeEEEEEeCCCCCCHHHHHHHHHHhcCCCcEEEEecCCCC
Confidence 3457899999999999999999988876543 3448999999999999999999999888765578888888999
Q ss_pred ChHHHHHHHHHhcCCCEEEEEeCCCCCCcchHHHHHHHHHHhccccccCCCcccccccccccCCCeeeeecchhhhhHhh
Q 019818 143 GKGEAIRKGMLHSRGELLLMLDADGATKVTDLEKLESQIHAVGRKEYNHGDSVTVDSTFRISDIPIAAFGSRAHLEEKAL 222 (335)
Q Consensus 143 Gk~~aln~g~~~a~~d~v~~~DaD~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~g~~~~~~~~~~ 222 (335)
|++.|+|.|++.++||+++++|+|+.++|++|.++++.+.++. . ++|.|++.... ...
T Consensus 80 G~~~a~n~g~~~a~g~~i~~lD~D~~~~~~~l~~l~~~~~~~~---~------------------~~v~g~r~~~~-~~~ 137 (243)
T PLN02726 80 GLGTAYIHGLKHASGDFVVIMDADLSHHPKYLPSFIKKQRETG---A------------------DIVTGTRYVKG-GGV 137 (243)
T ss_pred CHHHHHHHHHHHcCCCEEEEEcCCCCCCHHHHHHHHHHHHhcC---C------------------cEEEEccccCC-CCc
Confidence 9999999999999999999999999999999999999986532 1 78888875322 122
Q ss_pred hhhhhhHHHHHHHHHHHHHHHhCCCCccCCCceeeeeHHHHHHhhhhhhhccccchHHHHHHhHHcCCCEEEeeeEEEec
Q 019818 223 ATRKWYRNFLMKGFHLVVILTAGPGIRDTQCGFKMFTRAAARKLFTNIRLKRWCFDVELVYLCKRFGIPIIEISVNWSEI 302 (335)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~r~~l~~i~~~~~~~~~~~D~el~~r~~~~G~~i~~~p~~~~~~ 302 (335)
....+.+++.+...+.+.....+..+.+.+|++++|||+++++++......+|.+|.|++.++.++|+++.++|+.+.++
T Consensus 138 ~~~~~~r~~~~~~~~~~~~~~~~~~~~d~~g~~~~~rr~~~~~i~~~~~~~~~~~~~el~~~~~~~g~~i~~vp~~~~~r 217 (243)
T PLN02726 138 HGWDLRRKLTSRGANVLAQTLLWPGVSDLTGSFRLYKRSALEDLVSSVVSKGYVFQMEIIVRASRKGYRIEEVPITFVDR 217 (243)
T ss_pred CCccHHHHHHHHHHHHHHHHHhCCCCCcCCCcccceeHHHHHHHHhhccCCCcEEehHHHHHHHHcCCcEEEeCcEEeCC
Confidence 23445677777777777777777888999999999999999999655566788889999999999999999999988875
Q ss_pred --CCCcccccchHHHHHHHH
Q 019818 303 --PGSKVNPLSIPNMLWELA 320 (335)
Q Consensus 303 --~~s~~~~~~~~~~~~~~~ 320 (335)
+.|+.+...+++++....
T Consensus 218 ~~g~s~~~~~~~~~~~~~~~ 237 (243)
T PLN02726 218 VYGESKLGGSEIVQYLKGLL 237 (243)
T ss_pred CCCcccCCHHHHHHHHHHHH
Confidence 456655555555555443
|
|
| >KOG2978 consensus Dolichol-phosphate mannosyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-33 Score=226.18 Aligned_cols=230 Identities=23% Similarity=0.401 Sum_probs=204.9
Q ss_pred ceEEEEEeccCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCcchHHHHHHHHHHcCCCcEEEEEcCCCCChH
Q 019818 66 KYISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNHGKG 145 (335)
Q Consensus 66 ~~vsViip~~ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~vi~~~~~~Gk~ 145 (335)
++.||++|+|||.++|+-++.-+..... +...++|||+|||+|.|+|.++++++++.+.+.+|.+..+....|.+
T Consensus 3 ~kYsvilPtYnEk~Nlpi~~~li~~~~~-----e~~~~~eiIivDD~SpDGt~~~a~~L~k~yg~d~i~l~pR~~klGLg 77 (238)
T KOG2978|consen 3 IKYSVILPTYNEKENLPIITRLIAKYMS-----EEGKKYEIIIVDDASPDGTQEVAKALQKIYGEDNILLKPRTKKLGLG 77 (238)
T ss_pred cceeEEeccccCCCCCeeeHHHHHhhhh-----hhcCceEEEEEeCCCCCccHHHHHHHHHHhCCCcEEEEeccCcccch
Confidence 4589999999999999966665555444 36778999999999999999999999999988899999999999999
Q ss_pred HHHHHHHHhcCCCEEEEEeCCCCCCcchHHHHHHHHHHhccccccCCCcccccccccccCCCeeeeecchhhhhHhhhhh
Q 019818 146 EAIRKGMLHSRGELLLMLDADGATKVTDLEKLESQIHAVGRKEYNHGDSVTVDSTFRISDIPIAAFGSRAHLEEKALATR 225 (335)
Q Consensus 146 ~aln~g~~~a~~d~v~~~DaD~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~g~~~~~~~~~~~~~ 225 (335)
.|...|+++|+|++++++|||...+|.++.++++..+++ .+ ++|.|.|+. .+.+...|
T Consensus 78 tAy~hgl~~a~g~fiviMDaDlsHhPk~ipe~i~lq~~~---~~------------------div~GTRYa-~~ggV~gW 135 (238)
T KOG2978|consen 78 TAYIHGLKHATGDFIVIMDADLSHHPKFIPEFIRLQKEG---NY------------------DIVLGTRYA-GGGGVYGW 135 (238)
T ss_pred HHHHhhhhhccCCeEEEEeCccCCCchhHHHHHHHhhcc---Cc------------------ceeeeeeEc-CCCceecc
Confidence 999999999999999999999999999999999887654 23 899999974 44556679
Q ss_pred hhhHHHHHHHHHHHHHHHhCCCCccCCCceeeeeHHHHHHhhhhhhhccccchHHHHHHhHHcCCCEEEeeeEEEec--C
Q 019818 226 KWYRNFLMKGFHLVVILTAGPGIRDTQCGFKMFTRAAARKLFTNIRLKRWCFDVELVYLCKRFGIPIIEISVNWSEI--P 303 (335)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~r~~l~~i~~~~~~~~~~~D~el~~r~~~~G~~i~~~p~~~~~~--~ 303 (335)
+..|++++...+++.+.+.+....|.+|.|+++++++++.+..+..+.+|.|.+|+..|+.+.|+.|.++|+++.++ +
T Consensus 136 ~mkRk~IS~gAn~la~~ll~~~~sdltGsFrLykk~vl~~li~e~vSkGyvfqmEll~ra~~~~y~IgEvPitFvdR~~G 215 (238)
T KOG2978|consen 136 DMKRKIISRGANFLARILLNPGVSDLTGSFRLYKKEVLEKLIEESVSKGYVFQMELLARARQHGYTIGEVPITFVDRTYG 215 (238)
T ss_pred hhhHHHHhhhhHHHHHHhccCCCccCcceeeeehHHHHHhhHHHhhccchhhhHHHHHhccccCceEeecceEEEeeccc
Confidence 99999999999999999999999999999999999999999888888999999999999999999999999999886 7
Q ss_pred CCcccccchHHHHHHHHHH
Q 019818 304 GSKVNPLSIPNMLWELALM 322 (335)
Q Consensus 304 ~s~~~~~~~~~~~~~~~~i 322 (335)
.|+.+..-.+.++++.+.+
T Consensus 216 eSKLg~~eIv~ylk~l~~L 234 (238)
T KOG2978|consen 216 ESKLGGKEIVQYLKGLLYL 234 (238)
T ss_pred cccccHHHHHHHHHHHhhh
Confidence 7888888888887766543
|
|
| >cd04188 DPG_synthase DPG_synthase is involved in protein N-linked glycosylation | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-32 Score=238.72 Aligned_cols=211 Identities=52% Similarity=0.929 Sum_probs=183.1
Q ss_pred EEEeccCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCcchHHHHHHHHHHcCCCcEEEEEcCCCCChHHHHH
Q 019818 70 LIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNHGKGEAIR 149 (335)
Q Consensus 70 Viip~~ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~vi~~~~~~Gk~~aln 149 (335)
||||+|||++.|+++|+++.++... |+..++|||||||||+|+|.++++++.++++. .++++..++|.|+++|+|
T Consensus 1 iiip~yN~~~~l~~~l~~l~~~~~~----~~~~~~eiivvdd~S~D~t~~~~~~~~~~~~~-~i~~i~~~~n~G~~~a~~ 75 (211)
T cd04188 1 VVIPAYNEEKRLPPTLEEAVEYLEE----RPSFSYEIIVVDDGSKDGTAEVARKLARKNPA-LIRVLTLPKNRGKGGAVR 75 (211)
T ss_pred CEEcccChHHHHHHHHHHHHHHHhc----cCCCCEEEEEEeCCCCCchHHHHHHHHHhCCC-cEEEEEcccCCCcHHHHH
Confidence 6999999999999999999997663 35678999999999999999999999888773 258999999999999999
Q ss_pred HHHHhcCCCEEEEEeCCCCCCcchHHHHHHHHHHhccccccCCCcccccccccccCCCeeeeecchhhhhHhhhhhhhhH
Q 019818 150 KGMLHSRGELLLMLDADGATKVTDLEKLESQIHAVGRKEYNHGDSVTVDSTFRISDIPIAAFGSRAHLEEKALATRKWYR 229 (335)
Q Consensus 150 ~g~~~a~~d~v~~~DaD~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~g~~~~~~~~~~~~~~~~~ 229 (335)
.|++.|+||+|+++|+|+.++|+++.++++.+.+... ++|.|++............+.+
T Consensus 76 ~g~~~a~gd~i~~ld~D~~~~~~~l~~l~~~~~~~~~---------------------~~v~g~r~~~~~~~~~~~~~~~ 134 (211)
T cd04188 76 AGMLAARGDYILFADADLATPFEELEKLEEALKTSGY---------------------DIAIGSRAHLASAAVVKRSWLR 134 (211)
T ss_pred HHHHHhcCCEEEEEeCCCCCCHHHHHHHHHHHhccCC---------------------cEEEEEeeccCCcccccccHHH
Confidence 9999999999999999999999999999999654321 7888988754332224457788
Q ss_pred HHHHHHHHHHHHHHhCCCCccCCCceeeeeHHHHHHhhhhhhhccccchHHHHHHhHHcCCCEEEeeeEEEecCCCc
Q 019818 230 NFLMKGFHLVVILTAGPGIRDTQCGFKMFTRAAARKLFTNIRLKRWCFDVELVYLCKRFGIPIIEISVNWSEIPGSK 306 (335)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~r~~l~~i~~~~~~~~~~~D~el~~r~~~~G~~i~~~p~~~~~~~~s~ 306 (335)
.+.....+.+...+.+..+.+.+||+++|+|+++++++......+|.+|.|++.|+.+.|+++.++|+.|+++++|+
T Consensus 135 ~~~~~~~~~~~~~~~~~~~~d~~~g~~~~~r~~~~~~~~~~~~~~~~~d~el~~r~~~~g~~~~~vpi~~~~~~~~~ 211 (211)
T cd04188 135 NLLGRGFNFLVRLLLGLGIKDTQCGFKLFTRDAARRLFPRLHLERWAFDVELLVLARRLGYPIEEVPVRWVEIPGSK 211 (211)
T ss_pred HHHHHHHHHHHHHHcCCCCcccccCceeEcHHHHHHHHhhhhccceEeeHHHHHHHHHcCCeEEEcCcceecCCCCC
Confidence 88888888888888888899999999999999999997666667888999999999999999999999999998774
|
UDP-glucose:dolichyl-phosphate glucosyltransferase (DPG_synthase) is a transmembrane-bound enzyme of the endoplasmic reticulum involved in protein N-linked glycosylation. This enzyme catalyzes the transfer of glucose from UDP-glucose to dolichyl phosphate. |
| >PRK11204 N-glycosyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-31 Score=254.22 Aligned_cols=238 Identities=19% Similarity=0.212 Sum_probs=176.0
Q ss_pred CCCceEEEEEeccCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCcchHHHHHHHHHHcCCCcEEEEEcCCCC
Q 019818 63 PAEKYISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNH 142 (335)
Q Consensus 63 ~~~~~vsViip~~ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~vi~~~~~~ 142 (335)
...|+|||+||+|||++.+.+|++++.+ |.++++||+||||||+|+|.+.++++.++++ ++++++.++|.
T Consensus 51 ~~~p~vsViIp~yne~~~i~~~l~sl~~--------q~yp~~eiiVvdD~s~d~t~~~l~~~~~~~~--~v~~i~~~~n~ 120 (420)
T PRK11204 51 KEYPGVSILVPCYNEGENVEETISHLLA--------LRYPNYEVIAINDGSSDNTGEILDRLAAQIP--RLRVIHLAENQ 120 (420)
T ss_pred CCCCCEEEEEecCCCHHHHHHHHHHHHh--------CCCCCeEEEEEECCCCccHHHHHHHHHHhCC--cEEEEEcCCCC
Confidence 3457899999999999999999999987 5677899999999999999999999999888 89999988899
Q ss_pred ChHHHHHHHHHhcCCCEEEEEeCCCCCCcchHHHHHHHHHHhccccccCCCcccccccccccCCCeeeeecchhhhhHhh
Q 019818 143 GKGEAIRKGMLHSRGELLLMLDADGATKVTDLEKLESQIHAVGRKEYNHGDSVTVDSTFRISDIPIAAFGSRAHLEEKAL 222 (335)
Q Consensus 143 Gk~~aln~g~~~a~~d~v~~~DaD~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~g~~~~~~~~~~ 222 (335)
||+.|+|.|++.+++|+++++|+|+.++|++|.++++.++++++. ++|.|.....+....
T Consensus 121 Gka~aln~g~~~a~~d~i~~lDaD~~~~~d~L~~l~~~~~~~~~v--------------------~~v~g~~~~~~~~~~ 180 (420)
T PRK11204 121 GKANALNTGAAAARSEYLVCIDGDALLDPDAAAYMVEHFLHNPRV--------------------GAVTGNPRIRNRSTL 180 (420)
T ss_pred CHHHHHHHHHHHcCCCEEEEECCCCCCChhHHHHHHHHHHhCCCe--------------------EEEECCceeccchhH
Confidence 999999999999999999999999999999999999999876554 455554322111111
Q ss_pred hhhhhhHHHHHH-HHHHHHHHHhCCCCccCCCceeeeeHHHHHHhhhhhhhccccchHHHHHHhHHcCCCEEEee--eEE
Q 019818 223 ATRKWYRNFLMK-GFHLVVILTAGPGIRDTQCGFKMFTRAAARKLFTNIRLKRWCFDVELVYLCKRFGIPIIEIS--VNW 299 (335)
Q Consensus 223 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~~r~~l~~i~~~~~~~~~~~D~el~~r~~~~G~~i~~~p--~~~ 299 (335)
........+... ..........+ ......|++.+|||++++++.+ +....+.||.|++.|+.++|+++.+.| ..+
T Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~G~~~~~rr~~l~~vgg-~~~~~~~ED~~l~~rl~~~G~~i~~~p~~~~~ 258 (420)
T PRK11204 181 LGRIQVGEFSSIIGLIKRAQRVYG-RVFTVSGVITAFRKSALHEVGY-WSTDMITEDIDISWKLQLRGWDIRYEPRALCW 258 (420)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHhC-CceEecceeeeeeHHHHHHhCC-CCCCcccchHHHHHHHHHcCCeEEeccccEEE
Confidence 011000011000 00001111222 2233445667999999999843 334456789999999999999999998 566
Q ss_pred EecCCC-cccccchHHHHHHHHHHHhhhhcccee
Q 019818 300 SEIPGS-KVNPLSIPNMLWELALMSVGYRTGMWK 332 (335)
Q Consensus 300 ~~~~~s-~~~~~~~~~~~~~~~~i~~~y~~~~~k 332 (335)
.+.|.+ +.-.+|..|+..+.++..+++....++
T Consensus 259 ~~~p~t~~~~~~Qr~RW~~G~~~~l~~~~~~~~~ 292 (420)
T PRK11204 259 ILMPETLKGLWKQRLRWAQGGAEVLLKNFRRLWR 292 (420)
T ss_pred eECcccHHHHHHHHHHHhcCHHHHHHHHHHHhcC
Confidence 666665 334577788888888877777654443
|
|
| >PRK14583 hmsR N-glycosyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-31 Score=253.97 Aligned_cols=237 Identities=20% Similarity=0.215 Sum_probs=175.2
Q ss_pred CCceEEEEEeccCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCcchHHHHHHHHHHcCCCcEEEEEcCCCCC
Q 019818 64 AEKYISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNHG 143 (335)
Q Consensus 64 ~~~~vsViip~~ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~vi~~~~~~G 143 (335)
..|.|||+||+|||+..+++|++++++ |.++++||++|||||+|+|.+.++++.++++ ++++++.++|.|
T Consensus 73 ~~p~vsViIP~yNE~~~i~~~l~sll~--------q~yp~~eIivVdDgs~D~t~~~~~~~~~~~~--~v~vv~~~~n~G 142 (444)
T PRK14583 73 GHPLVSILVPCFNEGLNARETIHAALA--------QTYTNIEVIAINDGSSDDTAQVLDALLAEDP--RLRVIHLAHNQG 142 (444)
T ss_pred CCCcEEEEEEeCCCHHHHHHHHHHHHc--------CCCCCeEEEEEECCCCccHHHHHHHHHHhCC--CEEEEEeCCCCC
Confidence 457899999999999999999999887 5677899999999999999999999998888 899999888999
Q ss_pred hHHHHHHHHHhcCCCEEEEEeCCCCCCcchHHHHHHHHHHhccccccCCCcccccccccccCCCeeeeecchhhhhHhhh
Q 019818 144 KGEAIRKGMLHSRGELLLMLDADGATKVTDLEKLESQIHAVGRKEYNHGDSVTVDSTFRISDIPIAAFGSRAHLEEKALA 223 (335)
Q Consensus 144 k~~aln~g~~~a~~d~v~~~DaD~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~g~~~~~~~~~~~ 223 (335)
|+.|+|.|++.+++|+++++|||+.++|+++.++++.+.++++. .+|.|...........
T Consensus 143 ka~AlN~gl~~a~~d~iv~lDAD~~~~~d~L~~lv~~~~~~~~~--------------------g~v~g~~~~~~~~~~~ 202 (444)
T PRK14583 143 KAIALRMGAAAARSEYLVCIDGDALLDKNAVPYLVAPLIANPRT--------------------GAVTGNPRIRTRSTLI 202 (444)
T ss_pred HHHHHHHHHHhCCCCEEEEECCCCCcCHHHHHHHHHHHHhCCCe--------------------EEEEccceecCCCcch
Confidence 99999999999999999999999999999999999999876554 4455543221111000
Q ss_pred hhhhhHHHHHHHHHHH--HHHHhCCCCccCCCceeeeeHHHHHHhhhhhhhccccchHHHHHHhHHcCCCEEEee--eEE
Q 019818 224 TRKWYRNFLMKGFHLV--VILTAGPGIRDTQCGFKMFTRAAARKLFTNIRLKRWCFDVELVYLCKRFGIPIIEIS--VNW 299 (335)
Q Consensus 224 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~g~~~~~r~~l~~i~~~~~~~~~~~D~el~~r~~~~G~~i~~~p--~~~ 299 (335)
.+.....+. ...... .....+ .+....|++.+|||+++++++ ++......||.|++.|++++|+++.+.| ..+
T Consensus 203 ~~~~~~e~~-~~~~~~~~~~~~~g-~~~~~sG~~~~~rr~al~~vG-g~~~~~i~ED~dl~~rl~~~G~~i~~~p~a~~~ 279 (444)
T PRK14583 203 GRVQVGEFS-SIIGLIKRTQRVYG-QVFTVSGVVAAFRRRALADVG-YWSPDMITEDIDISWKLQLKHWSVFFEPRGLCW 279 (444)
T ss_pred hhHHHHHHH-HHHHHHHHHHHHhC-CceEecCceeEEEHHHHHHcC-CCCCCcccccHHHHHHHHHcCCeEEEeeccEEe
Confidence 000000110 111111 111222 222334556799999999994 3344557889999999999999999998 566
Q ss_pred EecCCC-cccccchHHHHHHHHHHHhhhhccceee
Q 019818 300 SEIPGS-KVNPLSIPNMLWELALMSVGYRTGMWKV 333 (335)
Q Consensus 300 ~~~~~s-~~~~~~~~~~~~~~~~i~~~y~~~~~k~ 333 (335)
.+.+.+ +..++|..|+..+..+..+++....|++
T Consensus 280 ~~~p~t~~~~~~Qr~RW~~G~~~~~~~~~~~~~~~ 314 (444)
T PRK14583 280 ILMPETLRGLWKQRLRWAQGGAEVFLKNMFKLWRW 314 (444)
T ss_pred eeCCCCHHHHHHHHHHHhCcHHHHHHHHHHHHhCc
Confidence 666665 3345777888877777777666555543
|
|
| >PRK10714 undecaprenyl phosphate 4-deoxy-4-formamido-L-arabinose transferase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.9e-29 Score=232.02 Aligned_cols=217 Identities=26% Similarity=0.408 Sum_probs=177.5
Q ss_pred CceEEEEEeccCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCcchHHHHHHHHHHcCCCcEEEEEcCCCCCh
Q 019818 65 EKYISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNHGK 144 (335)
Q Consensus 65 ~~~vsViip~~ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~vi~~~~~~Gk 144 (335)
.+++|||||+|||++.|+++++++.+.+.+ ...++||++|||||+|+|.++++++.++.+ .++..+..+.|.|+
T Consensus 5 ~~~vSVVIP~yNE~~~i~~~l~~l~~~~~~-----~~~~~EIIvVDDgS~D~T~~il~~~~~~~~-~~v~~i~~~~n~G~ 78 (325)
T PRK10714 5 IKKVSVVIPVYNEQESLPELIRRTTAACES-----LGKEYEILLIDDGSSDNSAEMLVEAAQAPD-SHIVAILLNRNYGQ 78 (325)
T ss_pred CCeEEEEEcccCchhhHHHHHHHHHHHHHh-----CCCCEEEEEEeCCCCCcHHHHHHHHHhhcC-CcEEEEEeCCCCCH
Confidence 356999999999999999999999876553 456799999999999999999998876532 25777777889999
Q ss_pred HHHHHHHHHhcCCCEEEEEeCCCCCCcchHHHHHHHHHHhccccccCCCcccccccccccCCCeeeeecchhhhhHhhhh
Q 019818 145 GEAIRKGMLHSRGELLLMLDADGATKVTDLEKLESQIHAVGRKEYNHGDSVTVDSTFRISDIPIAAFGSRAHLEEKALAT 224 (335)
Q Consensus 145 ~~aln~g~~~a~~d~v~~~DaD~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~g~~~~~~~~~~~~ 224 (335)
+.|++.|+++|+||+++++|+|.+.+|+.+.++++.++++. ++|.|.+... .
T Consensus 79 ~~A~~~G~~~A~gd~vv~~DaD~q~~p~~i~~l~~~~~~~~----------------------DvV~~~r~~~------~ 130 (325)
T PRK10714 79 HSAIMAGFSHVTGDLIITLDADLQNPPEEIPRLVAKADEGY----------------------DVVGTVRQNR------Q 130 (325)
T ss_pred HHHHHHHHHhCCCCEEEEECCCCCCCHHHHHHHHHHHHhhC----------------------CEEEEEEcCC------C
Confidence 99999999999999999999999999999999999996432 7777766421 2
Q ss_pred hhhhHHHHHHHHHHHHHHHhCCCCccCCCceeeeeHHHHHHhhhhhhhccccchHHHHHHhHHcCCCEEEeeeEEEec--
Q 019818 225 RKWYRNFLMKGFHLVVILTAGPGIRDTQCGFKMFTRAAARKLFTNIRLKRWCFDVELVYLCKRFGIPIIEISVNWSEI-- 302 (335)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~r~~l~~i~~~~~~~~~~~D~el~~r~~~~G~~i~~~p~~~~~~-- 302 (335)
.++++++.+..++.+.+.+.+.++.|.+|++++|+|++++.+..... . ...+...+...|+++.++|+.+.++
T Consensus 131 ~~~~r~~~s~~~~~l~~~~~g~~~~d~~~gfr~~~r~~~~~l~~~~~--~---~~~~~~l~~~~g~~i~evpv~~~~R~~ 205 (325)
T PRK10714 131 DSWFRKTASKMINRLIQRTTGKAMGDYGCMLRAYRRHIVDAMLHCHE--R---STFIPILANTFARRAIEIPVHHAEREF 205 (325)
T ss_pred CcHHHHHHHHHHHHHHHHHcCCCCCCCCcCeEEEcHHHHHHHHHCCC--C---ccHHHHHHHHcCCCEEEEEeEecCccC
Confidence 46788899999999989999999999999999999999999842222 1 1224566778899999999998876
Q ss_pred CCCcccccchHHHHHHHH
Q 019818 303 PGSKVNPLSIPNMLWELA 320 (335)
Q Consensus 303 ~~s~~~~~~~~~~~~~~~ 320 (335)
+.|+.+.++.++.+.+.+
T Consensus 206 G~Sk~~~~~~~~~~~~~~ 223 (325)
T PRK10714 206 GDSKYSFMRLINLMYDLV 223 (325)
T ss_pred CcCCCCHHHHHHHHHHHH
Confidence 567887777777665544
|
|
| >cd06442 DPM1_like DPM1_like represents putative enzymes similar to eukaryotic DPM1 | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.4e-29 Score=220.90 Aligned_cols=219 Identities=26% Similarity=0.461 Sum_probs=173.8
Q ss_pred EEEeccCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCcchHHHHHHHHHHcCCCcEEEEEcCCCCChHHHHH
Q 019818 70 LIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNHGKGEAIR 149 (335)
Q Consensus 70 Viip~~ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~vi~~~~~~Gk~~aln 149 (335)
||||+||+++.|+++|+++.++.. ..++|||||||||+|+|.++++++.++.+ .+.++..++|.|++.|+|
T Consensus 1 ViIp~yn~~~~l~~~l~sl~~q~~-------~~~~eiiiVDd~S~d~t~~~~~~~~~~~~--~i~~~~~~~n~G~~~a~n 71 (224)
T cd06442 1 IIIPTYNERENIPELIERLDAALK-------GIDYEIIVVDDNSPDGTAEIVRELAKEYP--RVRLIVRPGKRGLGSAYI 71 (224)
T ss_pred CeEeccchhhhHHHHHHHHHHhhc-------CCCeEEEEEeCCCCCChHHHHHHHHHhCC--ceEEEecCCCCChHHHHH
Confidence 699999999999999999998532 25799999999999999999999988887 789999999999999999
Q ss_pred HHHHhcCCCEEEEEeCCCCCCcchHHHHHHHHHHhccccccCCCcccccccccccCCCeeeeecchhhhhHhhhhhhhhH
Q 019818 150 KGMLHSRGELLLMLDADGATKVTDLEKLESQIHAVGRKEYNHGDSVTVDSTFRISDIPIAAFGSRAHLEEKALATRKWYR 229 (335)
Q Consensus 150 ~g~~~a~~d~v~~~DaD~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~g~~~~~~~~~~~~~~~~~ 229 (335)
.|++.|+||+|+++|+|+.++|++|..+++.+.... . ++|.|.+..... ......+.+
T Consensus 72 ~g~~~a~gd~i~~lD~D~~~~~~~l~~l~~~~~~~~-~--------------------~~v~g~~~~~~~-~~~~~~~~~ 129 (224)
T cd06442 72 EGFKAARGDVIVVMDADLSHPPEYIPELLEAQLEGG-A--------------------DLVIGSRYVEGG-GVEGWGLKR 129 (224)
T ss_pred HHHHHcCCCEEEEEECCCCCCHHHHHHHHHHHhcCC-C--------------------CEEEEeeeecCC-ccCCCcHHH
Confidence 999999999999999999999999999999874432 1 567776643221 122334455
Q ss_pred HHHHHHHHHHHHHHhCCCCccCCCceeeeeHHHHHHhhhhhhhccccchHHHHHHhHHcCCCEEEeeeEEEec--CCCcc
Q 019818 230 NFLMKGFHLVVILTAGPGIRDTQCGFKMFTRAAARKLFTNIRLKRWCFDVELVYLCKRFGIPIIEISVNWSEI--PGSKV 307 (335)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~r~~l~~i~~~~~~~~~~~D~el~~r~~~~G~~i~~~p~~~~~~--~~s~~ 307 (335)
...........+........+.++++++++|+++++++......+|.+|.|++.++.++|+++.++|..+..+ +.|+.
T Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ig~~~~~~~~~~~~~l~~~~~~~g~~i~~~p~~~~~~~~g~s~~ 209 (224)
T cd06442 130 KLISRGANLLARLLLGRKVSDPTSGFRAYRREVLEKLIDSLVSKGYKFQLELLVRARRLGYRIVEVPITFVDREHGESKL 209 (224)
T ss_pred HHHHHHHHHHHHHHcCCCCCCCCCccchhhHHHHHHHhhhccCCCcEEeHHHHHHHHHcCCeEEEeCeEEeccCCCcCce
Confidence 5555544444444456778888999999999999999634445678889999999999999999999776554 45666
Q ss_pred cccchHHHHHHH
Q 019818 308 NPLSIPNMLWEL 319 (335)
Q Consensus 308 ~~~~~~~~~~~~ 319 (335)
+...+++++...
T Consensus 210 ~~~~~~~~~~~~ 221 (224)
T cd06442 210 GGKEIVEYLKGL 221 (224)
T ss_pred eHHHHHHHHHHH
Confidence 666666666543
|
Proteins similar to eukaryotic DPM1, including enzymes from bacteria and archaea; DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi, |
| >TIGR03111 glyc2_xrt_Gpos1 putative glycosyltransferase TIGR03111 | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.6e-29 Score=238.84 Aligned_cols=235 Identities=13% Similarity=0.153 Sum_probs=165.0
Q ss_pred CCceEEEEEeccCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCcchHHHHHHHHHHcCCCcEEEEEcCCCCC
Q 019818 64 AEKYISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNHG 143 (335)
Q Consensus 64 ~~~~vsViip~~ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~vi~~~~~~G 143 (335)
..|.||||||+|||++.+.+||+++.++.+ |...+||+||||||+|+|.++++++.++++ ++.++..+++.|
T Consensus 47 ~~P~vsVIIP~yNe~~~l~~~l~sl~~q~y------p~~~~eIiVVDd~StD~T~~il~~~~~~~~--~v~v~~~~~~~G 118 (439)
T TIGR03111 47 KLPDITIIIPVYNSEDTLFNCIESIYNQTY------PIELIDIILANNQSTDDSFQVFCRAQNEFP--GLSLRYMNSDQG 118 (439)
T ss_pred CCCCEEEEEEeCCChHHHHHHHHHHHhcCC------CCCCeEEEEEECCCChhHHHHHHHHHHhCC--CeEEEEeCCCCC
Confidence 457799999999999999999999988422 344589999999999999999999988888 788877778899
Q ss_pred hHHHHHHHHHhcCCCEEEEEeCCCCCCcchHHHHHHHHHHhccccccCCCcccccccccccCCCeeeeecchhhhhHhhh
Q 019818 144 KGEAIRKGMLHSRGELLLMLDADGATKVTDLEKLESQIHAVGRKEYNHGDSVTVDSTFRISDIPIAAFGSRAHLEEKALA 223 (335)
Q Consensus 144 k~~aln~g~~~a~~d~v~~~DaD~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~g~~~~~~~~~~~ 223 (335)
|+.|+|.|++.+++|+|+++|+|+.++|++++++++.|.++++. +++.|......+....
T Consensus 119 ka~AlN~gl~~s~g~~v~~~DaD~~~~~d~L~~l~~~f~~~~~v--------------------~~v~g~~~~~~~~~~~ 178 (439)
T TIGR03111 119 KAKALNAAIYNSIGKYIIHIDSDGKLHKDAIKNMVTRFENNPDI--------------------HAMTGVILTDKELIEK 178 (439)
T ss_pred HHHHHHHHHHHccCCEEEEECCCCCcChHHHHHHHHHHHhCCCe--------------------EEEEeEEecCchhhhh
Confidence 99999999999999999999999999999999999999876543 3333432211110000
Q ss_pred hhhhhHHHHHHH--HHH----HH-HHH--hCCCCccCCCceeeeeHHHHHHhhhhhhhccccchHHHHHHhHH-cCCCEE
Q 019818 224 TRKWYRNFLMKG--FHL----VV-ILT--AGPGIRDTQCGFKMFTRAAARKLFTNIRLKRWCFDVELVYLCKR-FGIPII 293 (335)
Q Consensus 224 ~~~~~~~~~~~~--~~~----~~-~~~--~~~~~~~~~~g~~~~~r~~l~~i~~~~~~~~~~~D~el~~r~~~-~G~~i~ 293 (335)
............ +.. .. +.. .........|++.+|||++++++++ +.....+||.|++.++.. .|+++.
T Consensus 179 ~~~~~~~~~~~~~~~~y~~~~l~~r~~~s~~~~~~~~sGa~~~~Rr~~l~~vgg-f~~~~i~ED~~l~~rl~~~~g~kv~ 257 (439)
T TIGR03111 179 TKGRFLKLIRRCEYFEYAQAFLAGRNFESQVNSLFTLSGAFSAFRRETILKTQL-YNSETVGEDTDMTFQIRELLDGKVY 257 (439)
T ss_pred hcchhhhHhHHhHHHHHHHHHHhhhHHHHhcCCeEEEccHHHhhhHHHHHHhCC-CCCCCcCccHHHHHHHHHhcCCeEE
Confidence 111111111110 111 10 000 0112233455677899999999843 333456899999999974 689999
Q ss_pred Eee--eEEEecCCC-cccccchHHHHHHHHHHHhhhh
Q 019818 294 EIS--VNWSEIPGS-KVNPLSIPNMLWELALMSVGYR 327 (335)
Q Consensus 294 ~~p--~~~~~~~~s-~~~~~~~~~~~~~~~~i~~~y~ 327 (335)
+.| +.+.+.+.+ +....|..|+..+.+++...+.
T Consensus 258 ~~~~a~~~~~~p~t~~~~~~QR~RW~rG~~qv~~~~~ 294 (439)
T TIGR03111 258 LCENAIFYVDPIDGLNKLYTQRQRWQRGELEVSHMFF 294 (439)
T ss_pred ECCCCEEEEECCcCHHHHHHHHHHHhccHHHHHHHHH
Confidence 987 556655543 4455666777777776665554
|
Members of this protein family probable glycosyltransferases of family 2, whose genes are near those for Gram-positive proteins (TIGR03110) related to the proposed exosortase (TIGR02602). |
| >cd06427 CESA_like_2 CESA_like_2 is a member of the cellulose synthase superfamily | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.2e-28 Score=218.12 Aligned_cols=231 Identities=13% Similarity=0.093 Sum_probs=158.2
Q ss_pred ceEEEEEeccCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCcchHHHHHHHHHHcCCCcEEEEEcCCCCChH
Q 019818 66 KYISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNHGKG 145 (335)
Q Consensus 66 ~~vsViip~~ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~vi~~~~~~Gk~ 145 (335)
|.||||||+|||++.|.++|+|+.++.+ +...+||+||||+|+|+|.++++++... +..++.++....+.||+
T Consensus 1 p~vsIiIp~~Ne~~~l~~~l~sl~~~~y------~~~~~eiivVdd~s~d~t~~i~~~~~~~-~~~~i~~~~~~~~~G~~ 73 (241)
T cd06427 1 PVYTILVPLYKEAEVLPQLIASLSALDY------PRSKLDVKLLLEEDDEETIAAARALRLP-SIFRVVVVPPSQPRTKP 73 (241)
T ss_pred CeEEEEEecCCcHHHHHHHHHHHHhCcC------CcccEEEEEEECCCCchHHHHHHHhccC-CCeeEEEecCCCCCchH
Confidence 4699999999999999999999987422 3335999999999999999999887532 21145555555778999
Q ss_pred HHHHHHHHhcCCCEEEEEeCCCCCCcchHHHHHHHHHHh-ccccccCCCcccccccccccCCCeeeeecchhhhhHhhhh
Q 019818 146 EAIRKGMLHSRGELLLMLDADGATKVTDLEKLESQIHAV-GRKEYNHGDSVTVDSTFRISDIPIAAFGSRAHLEEKALAT 224 (335)
Q Consensus 146 ~aln~g~~~a~~d~v~~~DaD~~~~~~~l~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~v~g~~~~~~~~~~~~ 224 (335)
.|+|.|+++++||+|+++|+|+.++|+++.++++.+.++ ++. .++.|........
T Consensus 74 ~a~n~g~~~a~gd~i~~~DaD~~~~~~~l~~~~~~~~~~~~~v--------------------~~~~~~~~~~~~~---- 129 (241)
T cd06427 74 KACNYALAFARGEYVVIYDAEDAPDPDQLKKAVAAFARLDDKL--------------------ACVQAPLNYYNAR---- 129 (241)
T ss_pred HHHHHHHHhcCCCEEEEEcCCCCCChHHHHHHHHHHHhcCCCE--------------------EEEeCceEeeCCC----
Confidence 999999999999999999999999999999999999754 221 1222221111100
Q ss_pred hhhhHHHHH----HHHHHHHHHHhCCCCcc-CCCceeeeeHHHHHHhhhhhhhccccchHHHHHHhHHcCCCEEEeee-E
Q 019818 225 RKWYRNFLM----KGFHLVVILTAGPGIRD-TQCGFKMFTRAAARKLFTNIRLKRWCFDVELVYLCKRFGIPIIEISV-N 298 (335)
Q Consensus 225 ~~~~~~~~~----~~~~~~~~~~~~~~~~~-~~~g~~~~~r~~l~~i~~~~~~~~~~~D~el~~r~~~~G~~i~~~p~-~ 298 (335)
..+..+... ..+.............. ..|++.+|||++++++++. ....+.+|.|++.|+..+|+++.++|. .
T Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~rr~~~~~vgg~-~~~~~~eD~~l~~rl~~~G~r~~~~~~~~ 208 (241)
T cd06427 130 ENWLTRMFALEYAAWFDYLLPGLARLGLPIPLGGTSNHFRTDVLRELGGW-DPFNVTEDADLGLRLARAGYRTGVLNSTT 208 (241)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHhcCCeeecCCchHHhhHHHHHHcCCC-CcccchhhHHHHHHHHHCCceEEEecccc
Confidence 011111111 11111111111112222 2334568999999999443 334567899999999999999999984 4
Q ss_pred EEecCCC-cccccchHHHHHHHHHHHhhhhc
Q 019818 299 WSEIPGS-KVNPLSIPNMLWELALMSVGYRT 328 (335)
Q Consensus 299 ~~~~~~s-~~~~~~~~~~~~~~~~i~~~y~~ 328 (335)
+.+.+.+ +....+..||..+.+++...+.+
T Consensus 209 ~~~~~~~~~~~~~q~~Rw~~g~~~~~~~~~~ 239 (241)
T cd06427 209 LEEANNALGNWIRQRSRWIKGYMQTWLVHMR 239 (241)
T ss_pred cccCcHhHHHHHHHHHHHhccHHHHHHHHhh
Confidence 4444444 33447888888888888776544
|
The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, Glucan Biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis prot |
| >cd02520 Glucosylceramide_synthase Glucosylceramide synthase catalyzes the first glycosylation step of glycosphingolipid synthesis | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.7e-28 Score=207.04 Aligned_cols=167 Identities=17% Similarity=0.145 Sum_probs=137.9
Q ss_pred ceEEEEEeccCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCcchHHHHHHHHHHcCCCcEEEEEcCCCCC--
Q 019818 66 KYISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNHG-- 143 (335)
Q Consensus 66 ~~vsViip~~ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~vi~~~~~~G-- 143 (335)
|.||||||+|||++.|+++|+++.+ |.++++|||||||+|+|+|.++++++.++++..+++++..+.+.|
T Consensus 1 p~vsviip~~n~~~~l~~~L~sl~~--------q~~~~~eiivVdd~s~d~t~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 72 (196)
T cd02520 1 PGVSILKPLCGVDPNLYENLESFFQ--------QDYPKYEILFCVQDEDDPAIPVVRKLIAKYPNVDARLLIGGEKVGIN 72 (196)
T ss_pred CCeEEEEecCCCCccHHHHHHHHHh--------ccCCCeEEEEEeCCCcchHHHHHHHHHHHCCCCcEEEEecCCcCCCC
Confidence 4599999999999999999999988 466779999999999999999999998888855567777665544
Q ss_pred -hHHHHHHHHHhcCCCEEEEEeCCCCCCcchHHHHHHHHHHhccccccCCCcccccccccccCCCeeeeecchhhhhHhh
Q 019818 144 -KGEAIRKGMLHSRGELLLMLDADGATKVTDLEKLESQIHAVGRKEYNHGDSVTVDSTFRISDIPIAAFGSRAHLEEKAL 222 (335)
Q Consensus 144 -k~~aln~g~~~a~~d~v~~~DaD~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~g~~~~~~~~~~ 222 (335)
|+.++|.|++.++||+++++|+|+.++|++|..+++.+.+ ++. ++|.|.
T Consensus 73 ~~~~~~n~g~~~a~~d~i~~~D~D~~~~~~~l~~l~~~~~~-~~~--------------------~~v~~~--------- 122 (196)
T cd02520 73 PKVNNLIKGYEEARYDILVISDSDISVPPDYLRRMVAPLMD-PGV--------------------GLVTCL--------- 122 (196)
T ss_pred HhHHHHHHHHHhCCCCEEEEECCCceEChhHHHHHHHHhhC-CCC--------------------CeEEee---------
Confidence 6678999999999999999999999999999999999843 222 455553
Q ss_pred hhhhhhHHHHHHHHHHHHHHHhCCCCccCCCceeeeeHHHHHHhhhhhhh-ccccchHHHHHHhHHcCCCEEEeee
Q 019818 223 ATRKWYRNFLMKGFHLVVILTAGPGIRDTQCGFKMFTRAAARKLFTNIRL-KRWCFDVELVYLCKRFGIPIIEISV 297 (335)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~r~~l~~i~~~~~~-~~~~~D~el~~r~~~~G~~i~~~p~ 297 (335)
...|++.+++|++++++.+.... ...++|.+|+.|+.++|+++.+.|.
T Consensus 123 ---------------------------~~~g~~~~~r~~~~~~~ggf~~~~~~~~eD~~l~~rl~~~G~~i~~~~~ 171 (196)
T cd02520 123 ---------------------------CAFGKSMALRREVLDAIGGFEAFADYLAEDYFLGKLIWRLGYRVVLSPY 171 (196)
T ss_pred ---------------------------cccCceeeeEHHHHHhccChHHHhHHHHHHHHHHHHHHHcCCeEEEcch
Confidence 13455679999999999443221 2346799999999999999999984
|
UDP-glucose:N-acylsphingosine D-glucosyltransferase (glucosylceramide synthase or ceramide glucosyltransferase) catalyzes the first glycosylation step of glycosphingolipid synthesis. Its product, glucosylceramide, serves as the core of more than 300 glycosphingolipids (GSL). GSLs are a group of membrane components that have the lipid portion embedded in the outer plasma membrane leaflet and the sugar chains extended to the outer environment. Several lines of evidence suggest the importance of GSLs in various cellular processes such as differentiation, adhesion, proliferation, and cell-cell recognition. In pathogenic fungus Cryptococcus neoformans, glucosylceramide serves as an antigen that elicits an antibody response in patients and it is essential for fungal growth in host extracellular environment. |
| >TIGR03472 HpnI hopanoid biosynthesis associated glycosyl transferase protein HpnI | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.5e-27 Score=221.55 Aligned_cols=198 Identities=15% Similarity=0.131 Sum_probs=145.6
Q ss_pred CceEEEEEeccCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCcchHHHHHHHHHHcCCCcEEEEEcCCCCC-
Q 019818 65 EKYISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNHG- 143 (335)
Q Consensus 65 ~~~vsViip~~ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~vi~~~~~~G- 143 (335)
.|.||||||+|||++.|++||+|+.+ |+++++||+++||+|+|+|.++++++.+++|..+++++..+++.|
T Consensus 40 ~p~VSViiP~~nee~~l~~~L~Sl~~--------q~Yp~~EIivvdd~s~D~t~~iv~~~~~~~p~~~i~~v~~~~~~G~ 111 (373)
T TIGR03472 40 WPPVSVLKPLHGDEPELYENLASFCR--------QDYPGFQMLFGVQDPDDPALAVVRRLRADFPDADIDLVIDARRHGP 111 (373)
T ss_pred CCCeEEEEECCCCChhHHHHHHHHHh--------cCCCCeEEEEEeCCCCCcHHHHHHHHHHhCCCCceEEEECCCCCCC
Confidence 57799999999999999999999988 577789999999999999999999999999866688887766655
Q ss_pred --hHHHHHHHHHhcCCCEEEEEeCCCCCCcchHHHHHHHHHHhccccccCCCcccccccccccCCCeeeeecchhhhhHh
Q 019818 144 --KGEAIRKGMLHSRGELLLMLDADGATKVTDLEKLESQIHAVGRKEYNHGDSVTVDSTFRISDIPIAAFGSRAHLEEKA 221 (335)
Q Consensus 144 --k~~aln~g~~~a~~d~v~~~DaD~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~g~~~~~~~~~ 221 (335)
|..+++.+++.+++|+++++|+|+.++|++|+++++.+++ ++. ++|.|.......
T Consensus 112 ~~K~~~l~~~~~~a~ge~i~~~DaD~~~~p~~L~~lv~~~~~-~~v--------------------~~V~~~~~~~~~-- 168 (373)
T TIGR03472 112 NRKVSNLINMLPHARHDILVIADSDISVGPDYLRQVVAPLAD-PDV--------------------GLVTCLYRGRPV-- 168 (373)
T ss_pred ChHHHHHHHHHHhccCCEEEEECCCCCcChhHHHHHHHHhcC-CCc--------------------ceEeccccCCCC--
Confidence 7788888999999999999999999999999999999953 332 345442211111
Q ss_pred hhhhhhhHHHHH----HHHH--HHHHHHhCCCCccCCCceeeeeHHHHHHhhhhhh-hccccchHHHHHHhHHcCCCEEE
Q 019818 222 LATRKWYRNFLM----KGFH--LVVILTAGPGIRDTQCGFKMFTRAAARKLFTNIR-LKRWCFDVELVYLCKRFGIPIIE 294 (335)
Q Consensus 222 ~~~~~~~~~~~~----~~~~--~~~~~~~~~~~~~~~~g~~~~~r~~l~~i~~~~~-~~~~~~D~el~~r~~~~G~~i~~ 294 (335)
.++...... ..+. .......+ ......|.+.+|||++++++++... .....||.+++.++.++|+++.+
T Consensus 169 ---~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~G~~~a~RR~~l~~iGGf~~~~~~~~ED~~l~~~i~~~G~~v~~ 244 (373)
T TIGR03472 169 ---PGFWSRLGAMGINHNFLPSVMVARALG-RARFCFGATMALRRATLEAIGGLAALAHHLADDYWLGELVRALGLRVVL 244 (373)
T ss_pred ---CCHHHHHHHHHhhhhhhHHHHHHHhcc-CCccccChhhheeHHHHHHcCChHHhcccchHHHHHHHHHHHcCCeEEe
Confidence 011111111 1010 00111112 1122445567999999999954432 23456899999999999999998
Q ss_pred eee
Q 019818 295 ISV 297 (335)
Q Consensus 295 ~p~ 297 (335)
.|.
T Consensus 245 ~~~ 247 (373)
T TIGR03472 245 APV 247 (373)
T ss_pred cch
Confidence 873
|
This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The member of this clade from Acidithiobacillus ferrooxidans ATCC 23270 (AFE_0974) is found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. Similarly, in Ralstonia eutropha JMP134 (Reut_B4902) this gene is adjacent to HpnAB, IspH and HpnH (TIGR03470), although SHC itself is elsewhere in the genome. Notably, this gene (here named HpnI) and three others form a conserved set (HpnIJKL) which occur in a subset of all genomes containing the SHC enzyme. This relationship was discerned using the method of partial phylogenetic profiling. This group includes Zymomonas mobilis, the organism where the initial hopano |
| >TIGR03469 HonB hopene-associated glycosyltransferase HpnB | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.3e-26 Score=215.69 Aligned_cols=199 Identities=22% Similarity=0.206 Sum_probs=143.0
Q ss_pred CCCceEEEEEeccCCCCChHHHHHHHHHHHHHhhhcCCCC-ceEEEEEECCCCcchHHHHHHHHHHcCCC-cEEEEEcCC
Q 019818 63 PAEKYISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSF-TYEVLIIDDGSSDGTKRVAFDFVRKYTVD-NVRIILLGR 140 (335)
Q Consensus 63 ~~~~~vsViip~~ne~~~l~~~l~sl~~~~~~~~~~~~~~-~~eiivvdd~s~d~t~~~~~~~~~~~~~~-~i~vi~~~~ 140 (335)
+..|+||||||+|||++.|++||+++.+ |+++ ++|||||||+|+|+|.++++++.+++|.. ++++++.++
T Consensus 37 ~~~p~VSVIIpa~Ne~~~L~~~L~sL~~--------q~yp~~~eIIVVDd~StD~T~~i~~~~~~~~~~~~~i~vi~~~~ 108 (384)
T TIGR03469 37 EAWPAVVAVVPARNEADVIGECVTSLLE--------QDYPGKLHVILVDDHSTDGTADIARAAARAYGRGDRLTVVSGQP 108 (384)
T ss_pred CCCCCEEEEEecCCcHhHHHHHHHHHHh--------CCCCCceEEEEEeCCCCCcHHHHHHHHHHhcCCCCcEEEecCCC
Confidence 3467899999999999999999999988 3454 69999999999999999999998877632 588887532
Q ss_pred ----CCChHHHHHHHHHhcC-----CCEEEEEeCCCCCCcchHHHHHHHHHHhccccccCCCcccccccccccCCCeeee
Q 019818 141 ----NHGKGEAIRKGMLHSR-----GELLLMLDADGATKVTDLEKLESQIHAVGRKEYNHGDSVTVDSTFRISDIPIAAF 211 (335)
Q Consensus 141 ----~~Gk~~aln~g~~~a~-----~d~v~~~DaD~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 211 (335)
+.||..|+|.|++.++ +|+++++|+|+.++|++++++++.+++.+. +++.
T Consensus 109 ~~~g~~Gk~~A~n~g~~~A~~~~~~gd~llflDaD~~~~p~~l~~lv~~~~~~~~---------------------~~vs 167 (384)
T TIGR03469 109 LPPGWSGKLWAVSQGIAAARTLAPPADYLLLTDADIAHGPDNLARLVARARAEGL---------------------DLVS 167 (384)
T ss_pred CCCCCcchHHHHHHHHHHHhccCCCCCEEEEECCCCCCChhHHHHHHHHHHhCCC---------------------CEEE
Confidence 3589999999999999 999999999999999999999999976431 3343
Q ss_pred ecchhhhhHhhhhhhhhHHHHHHHHHHHH------HHHhC--CCCccCCCceeeeeHHHHHHhhhhhhh-ccccchHHHH
Q 019818 212 GSRAHLEEKALATRKWYRNFLMKGFHLVV------ILTAG--PGIRDTQCGFKMFTRAAARKLFTNIRL-KRWCFDVELV 282 (335)
Q Consensus 212 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~--~~~~~~~~g~~~~~r~~l~~i~~~~~~-~~~~~D~el~ 282 (335)
+....... +.+.+.....+.... ..... .......|++.++||++++++++.... ..+.+|.+++
T Consensus 168 ~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~lirr~~~~~vGGf~~~~~~~~ED~~L~ 241 (384)
T TIGR03469 168 LMVRLRCE------SFWEKLLIPAFVFFFQKLYPFRWVNDPRRRTAAAAGGCILIRREALERIGGIAAIRGALIDDCTLA 241 (384)
T ss_pred ecccccCC------CHHHHHHHHHHHHHHHHhcchhhhcCCCccceeecceEEEEEHHHHHHcCCHHHHhhCcccHHHHH
Confidence 32211110 111111110110111 10110 112224567889999999999443321 3466899999
Q ss_pred HHhHHcCCCEEEee
Q 019818 283 YLCKRFGIPIIEIS 296 (335)
Q Consensus 283 ~r~~~~G~~i~~~p 296 (335)
.++.++|+++....
T Consensus 242 ~r~~~~G~~v~~~~ 255 (384)
T TIGR03469 242 AAVKRSGGRIWLGL 255 (384)
T ss_pred HHHHHcCCcEEEEe
Confidence 99999999998864
|
This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The genes of this family are often found in the same genetic locus with squalene-hopene cyclase genes, and are never associated with genes for the metabolism of phytoene. Indeed, the members of this family appear to never be found in a genome lacking squalene-hopene cyclase (SHC), although not all genomes encoding SHC have this glycosyl transferase. In the organism Zymomonas mobilis the linkage of this gene to hopanoid biosynthesis has been noted and the gene named HpnB. Hopanoids are known to feature polar glycosyl head groups in many organisms. |
| >PRK11498 bcsA cellulose synthase catalytic subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=7e-26 Score=227.22 Aligned_cols=230 Identities=11% Similarity=0.029 Sum_probs=157.0
Q ss_pred CCCceEEEEEeccCCCC-ChHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCcchHHHHHHHHHHcCCCcEEEEEcCCC
Q 019818 63 PAEKYISLIIPAFNEEH-RLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRN 141 (335)
Q Consensus 63 ~~~~~vsViip~~ne~~-~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~vi~~~~~ 141 (335)
...|+|+|+||+|||+. .+++++.+++++. +|..++||+|+||||+|+|.+++++. +++++.+++|
T Consensus 257 ~~~P~VsViIPtYNE~~~vv~~tI~a~l~~d------YP~~k~EViVVDDgS~D~t~~la~~~-------~v~yI~R~~n 323 (852)
T PRK11498 257 SLWPTVDIFVPTYNEDLNVVKNTIYASLGID------WPKDKLNIWILDDGGREEFRQFAQEV-------GVKYIARPTH 323 (852)
T ss_pred CCCCcEEEEEecCCCcHHHHHHHHHHHHhcc------CCCCceEEEEEeCCCChHHHHHHHHC-------CcEEEEeCCC
Confidence 34588999999999985 4567887777642 35567999999999999999888765 6888888765
Q ss_pred C-ChHHHHHHHHHhcCCCEEEEEeCCCCCCcchHHHHHHHHHHhccccccCCCcccccccccccCCCeeeeecchhhhhH
Q 019818 142 H-GKGEAIRKGMLHSRGELLLMLDADGATKVTDLEKLESQIHAVGRKEYNHGDSVTVDSTFRISDIPIAAFGSRAHLEEK 220 (335)
Q Consensus 142 ~-Gk~~aln~g~~~a~~d~v~~~DaD~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~g~~~~~~~~ 220 (335)
. ||++|+|.|+++++||+|+++|||+.+++++|++++..|.++++. .+|.+.....+.+
T Consensus 324 ~~gKAGnLN~aL~~a~GEyIavlDAD~ip~pdfL~~~V~~f~~dP~V--------------------glVQtp~~f~n~d 383 (852)
T PRK11498 324 EHAKAGNINNALKYAKGEFVAIFDCDHVPTRSFLQMTMGWFLKDKKL--------------------AMMQTPHHFFSPD 383 (852)
T ss_pred CcchHHHHHHHHHhCCCCEEEEECCCCCCChHHHHHHHHHHHhCCCe--------------------EEEEcceeccCCc
Confidence 4 599999999999999999999999999999999999998776654 3444432111100
Q ss_pred hhhh-hhhhHHHHH---HHHHHHHHHHhCCCCccCCCceeeeeHHHHHHhhhhhhhccccchHHHHHHhHHcCCCEEEee
Q 019818 221 ALAT-RKWYRNFLM---KGFHLVVILTAGPGIRDTQCGFKMFTRAAARKLFTNIRLKRWCFDVELVYLCKRFGIPIIEIS 296 (335)
Q Consensus 221 ~~~~-~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~g~~~~~r~~l~~i~~~~~~~~~~~D~el~~r~~~~G~~i~~~p 296 (335)
.... -...+...+ ..+................|++.++||++++++++. .....+||.|++.|+.++|+++.+++
T Consensus 384 p~~rnl~~~~~~~~e~~~fy~~iq~g~~~~~a~~~~Gs~aviRReaLeeVGGf-d~~titED~dlslRL~~~Gyrv~yl~ 462 (852)
T PRK11498 384 PFERNLGRFRKTPNEGTLFYGLVQDGNDMWDATFFCGSCAVIRRKPLDEIGGI-AVETVTEDAHTSLRLHRRGYTSAYMR 462 (852)
T ss_pred hHHHhhHHHhhcccchhHHHHHHHhHHHhhcccccccceeeeEHHHHHHhcCC-CCCccCccHHHHHHHHHcCCEEEEEe
Confidence 0000 000000000 011111111111111223445678999999999443 33457899999999999999999986
Q ss_pred --eEEEecCCCcc-cccchHHHHHHHHHHHhhh
Q 019818 297 --VNWSEIPGSKV-NPLSIPNMLWELALMSVGY 326 (335)
Q Consensus 297 --~~~~~~~~s~~-~~~~~~~~~~~~~~i~~~y 326 (335)
..+...+.+-. -.+|..|+..+..++.+..
T Consensus 463 ~~~a~glaPesl~~~~~QR~RWarG~lQi~r~~ 495 (852)
T PRK11498 463 IPQAAGLATESLSAHIGQRIRWARGMVQIFRLD 495 (852)
T ss_pred ccceeEECCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 44444444433 2367778888888777653
|
|
| >cd06437 CESA_CaSu_A2 Cellulose synthase catalytic subunit A2 (CESA2) is a catalytic subunit or a catalytic subunit substitute of the cellulose synthase complex | Back alignment and domain information |
|---|
Probab=99.95 E-value=1e-26 Score=204.33 Aligned_cols=207 Identities=17% Similarity=0.202 Sum_probs=140.5
Q ss_pred ceEEEEEeccCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCcchHHHHHHHHHHcC--CCcEEEEEcCCCCC
Q 019818 66 KYISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYT--VDNVRIILLGRNHG 143 (335)
Q Consensus 66 ~~vsViip~~ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~--~~~i~vi~~~~~~G 143 (335)
|+||||||+|||++.|.++|+++.++. ++...+||||+|| |+|+|.+++++..++++ ..+++++...++.|
T Consensus 1 p~vSViIp~yNe~~~l~~~L~sl~~q~------~~~~~~eIiVvD~-s~D~t~~~~~~~~~~~~~~~~~i~~~~~~~~~G 73 (232)
T cd06437 1 PMVTVQLPVFNEKYVVERLIEAACALD------YPKDRLEIQVLDD-STDETVRLAREIVEEYAAQGVNIKHVRRADRTG 73 (232)
T ss_pred CceEEEEecCCcHHHHHHHHHHHHhcC------CCccceEEEEEEC-CCCcHHHHHHHHHHHHhhcCCceEEEECCCCCC
Confidence 459999999999999999999998742 2334589999998 99999999998876543 22577777766677
Q ss_pred -hHHHHHHHHHhcCCCEEEEEeCCCCCCcchHHHHHHHHHHhccccccCCCcccccccccccCCCeeeeecchhhhhHhh
Q 019818 144 -KGEAIRKGMLHSRGELLLMLDADGATKVTDLEKLESQIHAVGRKEYNHGDSVTVDSTFRISDIPIAAFGSRAHLEEKAL 222 (335)
Q Consensus 144 -k~~aln~g~~~a~~d~v~~~DaD~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~g~~~~~~~~~~ 222 (335)
|+.|+|.|++.++||||+++|+|+.++|++|.++...+. +++. .+|.|........
T Consensus 74 ~k~~a~n~g~~~a~~~~i~~~DaD~~~~~~~l~~~~~~~~-~~~v--------------------~~v~~~~~~~~~~-- 130 (232)
T cd06437 74 YKAGALAEGMKVAKGEYVAIFDADFVPPPDFLQKTPPYFA-DPKL--------------------GFVQTRWGHINAN-- 130 (232)
T ss_pred CchHHHHHHHHhCCCCEEEEEcCCCCCChHHHHHhhhhhc-CCCe--------------------EEEecceeeEcCC--
Confidence 899999999999999999999999999999999777663 3332 3444432211110
Q ss_pred hhhhhhHHHHHHHHH--HHH-H--HHhCCCCccCCCceeeeeHHHHHHhhhhhhhccccchHHHHHHhHHcCCCEEEee-
Q 019818 223 ATRKWYRNFLMKGFH--LVV-I--LTAGPGIRDTQCGFKMFTRAAARKLFTNIRLKRWCFDVELVYLCKRFGIPIIEIS- 296 (335)
Q Consensus 223 ~~~~~~~~~~~~~~~--~~~-~--~~~~~~~~~~~~g~~~~~r~~l~~i~~~~~~~~~~~D~el~~r~~~~G~~i~~~p- 296 (335)
..+.......... ... . ...........|++.+|||++++++.+. ....+.+|.+|+.|+..+|+++.++|
T Consensus 131 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~rr~~~~~vgg~-~~~~~~ED~~l~~rl~~~G~~~~~~~~ 207 (232)
T cd06437 131 --YSLLTRVQAMSLDYHFTIEQVARSSTGLFFNFNGTAGVWRKECIEDAGGW-NHDTLTEDLDLSYRAQLKGWKFVYLDD 207 (232)
T ss_pred --CchhhHhhhhhHHhhhhHhHhhHhhcCCeEEeccchhhhhHHHHHHhCCC-CCCcchhhHHHHHHHHHCCCeEEEecc
Confidence 0111111110000 000 0 1111111223344558999999998433 33456789999999999999999998
Q ss_pred -eEEEecCCC
Q 019818 297 -VNWSEIPGS 305 (335)
Q Consensus 297 -~~~~~~~~s 305 (335)
..+...+.+
T Consensus 208 ~~v~~~~~~~ 217 (232)
T cd06437 208 VVVPAELPAS 217 (232)
T ss_pred ceeeeeCCcC
Confidence 444444444
|
Cellulose synthase (CESA) catalyzes the polymerization reaction of cellulose using UDP-glucose as the substrate. Cellulose is an aggregate of unbranched polymers of beta-1,4-linked glucose residues, which is an abundant polysaccharide produced by plants and in varying degrees by several other organisms including algae, bacteria, fungi, and even some animals. Genomes from higher plants harbor multiple CESA genes. There are ten in Arabidopsis. At least three different CESA proteins are required to form a functional complex. In Arabidopsis, CESA1, 3 and 6 and CESA4, 7 and 8, are required for cellulose biosynthesis during primary and secondary cell wall formation. CESA2 is very closely related to CESA6 and is viewed as a prime substitute for CESA6. They functionally compensate each other. The cesa2 and cesa6 double mutant plants we |
| >TIGR03030 CelA cellulose synthase catalytic subunit (UDP-forming) | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.1e-25 Score=224.52 Aligned_cols=233 Identities=16% Similarity=0.106 Sum_probs=154.3
Q ss_pred CCCceEEEEEeccCCCCCh-HHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCcch--------------HHHHHHHHHH
Q 019818 63 PAEKYISLIIPAFNEEHRL-PGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGT--------------KRVAFDFVRK 127 (335)
Q Consensus 63 ~~~~~vsViip~~ne~~~l-~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t--------------~~~~~~~~~~ 127 (335)
...|+|||+||+|||+..+ ++|++++.++ ++|..++||+|+||||+|+| .+.+++++++
T Consensus 128 ~~~P~VsViIP~yNE~~~iv~~tl~s~~~~------dYP~~~~eIiVvDDgStD~t~~~~~~~~~~~~~~~~~~~~l~~~ 201 (713)
T TIGR03030 128 EEWPTVDVFIPTYNEDLEIVATTVLAAKNM------DYPADKFRVWILDDGGTDQKRNDPDPEQAEAAQRREELKEFCRK 201 (713)
T ss_pred ccCCeeEEEEcCCCCCHHHHHHHHHHHHhC------CCCccceEEEEEECcCCccccccchhhhhhhhhhHHHHHHHHHH
Confidence 4457899999999999655 5688887663 13445799999999999997 3455666665
Q ss_pred cCCCcEEEEEcCCCC-ChHHHHHHHHHhcCCCEEEEEeCCCCCCcchHHHHHHHHHHhccccccCCCcccccccccccCC
Q 019818 128 YTVDNVRIILLGRNH-GKGEAIRKGMLHSRGELLLMLDADGATKVTDLEKLESQIHAVGRKEYNHGDSVTVDSTFRISDI 206 (335)
Q Consensus 128 ~~~~~i~vi~~~~~~-Gk~~aln~g~~~a~~d~v~~~DaD~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (335)
. +++++.+++|. +|++|+|.|+++++||+|+++|||+.++|++|.+++..|.++++.
T Consensus 202 ~---~v~yi~r~~n~~~KAgnLN~al~~a~gd~Il~lDAD~v~~pd~L~~~v~~f~~dp~v------------------- 259 (713)
T TIGR03030 202 L---GVNYITRPRNVHAKAGNINNALKHTDGELILIFDADHVPTRDFLQRTVGWFVEDPKL------------------- 259 (713)
T ss_pred c---CcEEEECCCCCCCChHHHHHHHHhcCCCEEEEECCCCCcChhHHHHHHHHHHhCCCE-------------------
Confidence 4 58888888775 599999999999999999999999999999999999999776554
Q ss_pred CeeeeecchhhhhHhhhhh-hhhHHH---HHHHHHHHHHHHhCCCCccCCCceeeeeHHHHHHhhhhhhhccccchHHHH
Q 019818 207 PIAAFGSRAHLEEKALATR-KWYRNF---LMKGFHLVVILTAGPGIRDTQCGFKMFTRAAARKLFTNIRLKRWCFDVELV 282 (335)
Q Consensus 207 ~~~v~g~~~~~~~~~~~~~-~~~~~~---~~~~~~~~~~~~~~~~~~~~~~g~~~~~r~~l~~i~~~~~~~~~~~D~el~ 282 (335)
.+|.+.....+.+..... ...... ....+..........+.....|++.++||++++++++. ......||.+++
T Consensus 260 -~~Vqtp~~f~~p~~~~~nl~~~~~~~~e~~~f~~~i~~g~~~~~~~~~~Gs~~~iRR~al~~iGGf-~~~~vtED~~l~ 337 (713)
T TIGR03030 260 -FLVQTPHFFVSPDPIERNLGTFRRMPNENELFYGLIQDGNDFWNAAFFCGSAAVLRREALDEIGGI-AGETVTEDAETA 337 (713)
T ss_pred -EEEeCCeeccCCCHHhhhhHHHHHhhhHHHHHHHHHHHHHhhhCCeeecCceeEEEHHHHHHcCCC-CCCCcCcHHHHH
Confidence 234332211110000000 000000 00111111111111111223344678999999999443 334568899999
Q ss_pred HHhHHcCCCEEEee--eEEEecCCC-cccccchHHHHHHHHHHHhh
Q 019818 283 YLCKRFGIPIIEIS--VNWSEIPGS-KVNPLSIPNMLWELALMSVG 325 (335)
Q Consensus 283 ~r~~~~G~~i~~~p--~~~~~~~~s-~~~~~~~~~~~~~~~~i~~~ 325 (335)
.|+.++|+++.++| ..+...+.+ +.-.+|..|+..+.+++.+.
T Consensus 338 ~rL~~~G~~~~y~~~~~~~g~~p~sl~~~~~Qr~RWa~G~~qi~~~ 383 (713)
T TIGR03030 338 LKLHRRGWNSAYLDRPLIAGLAPETLSGHIGQRIRWAQGMMQIFRL 383 (713)
T ss_pred HHHHHcCCeEEEeccccccccCCCCHHHHHHHHHHHhcChHHHHhh
Confidence 99999999999997 334334444 22346666777777776553
|
Cellulose synthase catalyzes the beta-1,4 polymerization of glucose residues in the formation of cellulose. In bacteria, the substrate is UDP-glucose. The synthase consists of two subunits (or domains in the frequent cases where it is encoded as a single polypeptide), the catalytic domain modelled here and the regulatory domain (pfam03170). The regulatory domain binds the allosteric activator cyclic di-GMP. The protein is membrane-associated and probably assembles into multimers such that the individual cellulose strands can self-assemble into multi-strand fibrils. |
| >cd06421 CESA_CelA_like CESA_CelA_like are involved in the elongation of the glucan chain of cellulose | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.3e-26 Score=200.81 Aligned_cols=199 Identities=14% Similarity=0.098 Sum_probs=140.1
Q ss_pred ceEEEEEeccCCC-CChHHHHHHHHHHHHHhhhcCCCCc--eEEEEEECCCCcchHHHHHHHHHHcCCCcEEEEEcCCCC
Q 019818 66 KYISLIIPAFNEE-HRLPGALDETLNYLQQRAAKDKSFT--YEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNH 142 (335)
Q Consensus 66 ~~vsViip~~ne~-~~l~~~l~sl~~~~~~~~~~~~~~~--~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~vi~~~~~~ 142 (335)
|.||||||+|||+ +.++++|+|+++ |++++ +||+||||+|+|+|.++++++..++ ++.++..+.|.
T Consensus 1 p~vsviip~~n~~~~~l~~~l~sl~~--------q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~---~~~~~~~~~~~ 69 (234)
T cd06421 1 PTVDVFIPTYNEPLEIVRKTLRAALA--------IDYPHDKLRVYVLDDGRRPELRALAAELGVEY---GYRYLTRPDNR 69 (234)
T ss_pred CceEEEEecCCCcHHHHHHHHHHHHh--------cCCCcccEEEEEEcCCCchhHHHHHHHhhccc---CceEEEeCCCC
Confidence 4599999999987 568889999987 45666 9999999999999999999987654 35666666665
Q ss_pred C-hHHHHHHHHHhcCCCEEEEEeCCCCCCcchHHHHHHHHHHhccccccCCCcccccccccccCCCeeeeecchhhhhHh
Q 019818 143 G-KGEAIRKGMLHSRGELLLMLDADGATKVTDLEKLESQIHAVGRKEYNHGDSVTVDSTFRISDIPIAAFGSRAHLEEKA 221 (335)
Q Consensus 143 G-k~~aln~g~~~a~~d~v~~~DaD~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~g~~~~~~~~~ 221 (335)
| |++++|.|++.+++|+++++|+|+.++|++|.++++.+.++++. .+|.|.........
T Consensus 70 ~~~~~~~n~~~~~a~~d~i~~lD~D~~~~~~~l~~l~~~~~~~~~~--------------------~~v~~~~~~~~~~~ 129 (234)
T cd06421 70 HAKAGNLNNALAHTTGDFVAILDADHVPTPDFLRRTLGYFLDDPKV--------------------ALVQTPQFFYNPDP 129 (234)
T ss_pred CCcHHHHHHHHHhCCCCEEEEEccccCcCccHHHHHHHHHhcCCCe--------------------EEEecceEEecCCc
Confidence 5 78899999999999999999999999999999999999875443 34444322111110
Q ss_pred hh-hhhhhHHHHHHHHHHHHHHHhCCCCccCCCceeeeeHHHHHHhhhhhhhccccchHHHHHHhHHcCCCEEEee
Q 019818 222 LA-TRKWYRNFLMKGFHLVVILTAGPGIRDTQCGFKMFTRAAARKLFTNIRLKRWCFDVELVYLCKRFGIPIIEIS 296 (335)
Q Consensus 222 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~r~~l~~i~~~~~~~~~~~D~el~~r~~~~G~~i~~~p 296 (335)
.. .............................|++.+|||++++++++. ....+.+|.+++.|+..+|+++.++|
T Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~r~~~~~~ig~~-~~~~~~eD~~l~~r~~~~g~~i~~~~ 204 (234)
T cd06421 130 FDWLADGAPNEQELFYGVIQPGRDRWGAAFCCGSGAVVRREALDEIGGF-PTDSVTEDLATSLRLHAKGWRSVYVP 204 (234)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHhhcCCceecCceeeEeHHHHHHhCCC-CccceeccHHHHHHHHHcCceEEEec
Confidence 00 0000000001111111111111223334556779999999999433 33456789999999999999999998
|
Family of proteins related to Agrobacterium tumefaciens CelA and Gluconacetobacter xylinus BscA. These proteins are involved in the elongation of the glucan chain of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues. They are putative catalytic subunit of cellulose synthase, which is a glycosyltransferase using UDP-glucose as the substrate. The catalytic subunit is an integral membrane protein with 6 transmembrane segments and it is postulated that the protein is anchored in the membrane at the N-terminal end. |
| >cd02510 pp-GalNAc-T pp-GalNAc-T initiates the formation of mucin-type O-linked glycans | Back alignment and domain information |
|---|
Probab=99.94 E-value=4e-26 Score=208.33 Aligned_cols=210 Identities=20% Similarity=0.150 Sum_probs=139.8
Q ss_pred EEEEeccCCC-CChHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCcchHHHHHHH--HHHcCCCcEEEEEcCCCCChH
Q 019818 69 SLIIPAFNEE-HRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDF--VRKYTVDNVRIILLGRNHGKG 145 (335)
Q Consensus 69 sViip~~ne~-~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~--~~~~~~~~i~vi~~~~~~Gk~ 145 (335)
|||||+||++ +.|.+||+|+.++.. +...+|||||||||+|+|.+.+.+. .+..+ +++++..++|.|.+
T Consensus 1 SIIIp~~N~~~~~l~~~l~Sl~~~~~------~~~~~EIIvVDd~S~d~t~~~~~~~~~~~~~~--~v~vi~~~~n~G~~ 72 (299)
T cd02510 1 SVIIIFHNEALSTLLRTVHSVINRTP------PELLKEIILVDDFSDKPELKLLLEEYYKKYLP--KVKVLRLKKREGLI 72 (299)
T ss_pred CEEEEEecCcHHHHHHHHHHHHhcCc------hhcCCEEEEEECCCCchHHHHHHHHHHhhcCC--cEEEEEcCCCCCHH
Confidence 6999999999 999999999998422 2234699999999999999988762 23334 79999999999999
Q ss_pred HHHHHHHHhcCCCEEEEEeCCCCCCcchHHHHHHHHHHhccccccCCCcccccc-cccccCCCeeeeecchhhhhHhhhh
Q 019818 146 EAIRKGMLHSRGELLLMLDADGATKVTDLEKLESQIHAVGRKEYNHGDSVTVDS-TFRISDIPIAAFGSRAHLEEKALAT 224 (335)
Q Consensus 146 ~aln~g~~~a~~d~v~~~DaD~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~v~g~~~~~~~~~~~~ 224 (335)
.|+|.|++.|+||+|+++|+|+.++|++|..|++.+.+++.. ++.|.....+. .+.+..+...+.|.. .
T Consensus 73 ~a~N~g~~~A~gd~i~fLD~D~~~~~~wL~~ll~~l~~~~~~-~v~p~~~~~~~~~~~~~~~~~~~~~~~---------~ 142 (299)
T cd02510 73 RARIAGARAATGDVLVFLDSHCEVNVGWLEPLLARIAENRKT-VVCPIIDVIDADTFEYRGSSGDARGGF---------D 142 (299)
T ss_pred HHHHHHHHHccCCEEEEEeCCcccCccHHHHHHHHHHhCCCe-EEEeeeccccCCCeeEecCCCceeEEe---------c
Confidence 999999999999999999999999999999999999876543 22232211111 111110000000000 0
Q ss_pred hhhhHHHHHHHHHH--HHHHHhCCCCccCCCceeeeeHHHHHHhhhhhh-hccc-cchHHHHHHhHHcCCCEEEee
Q 019818 225 RKWYRNFLMKGFHL--VVILTAGPGIRDTQCGFKMFTRAAARKLFTNIR-LKRW-CFDVELVYLCKRFGIPIIEIS 296 (335)
Q Consensus 225 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~g~~~~~r~~l~~i~~~~~-~~~~-~~D~el~~r~~~~G~~i~~~p 296 (335)
+............. ..............|++.++||++++++++... ...+ .+|.||++|+..+|+++.++|
T Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~irr~~~~~vGgfDe~~~~~~~ED~Dl~~R~~~~G~~i~~~p 218 (299)
T cd02510 143 WSLHFKWLPLPEEERRRESPTAPIRSPTMAGGLFAIDREWFLELGGYDEGMDIWGGENLELSFKVWQCGGSIEIVP 218 (299)
T ss_pred ccceeccccCCHHHhhhcCCCCCccCccccceeeEEEHHHHHHhCCCCCcccccCchhHHHHHHHHHcCCeEEEee
Confidence 00000000000000 000001122334557788999999999943322 1222 479999999999999999999
|
UDP-GalNAc: polypeptide alpha-N-acetylgalactosaminyltransferases (pp-GalNAc-T) initiate the formation of mucin-type, O-linked glycans by catalyzing the transfer of alpha-N-acetylgalactosamine (GalNAc) from UDP-GalNAc to hydroxyl groups of Ser or Thr residues of core proteins to form the Tn antigen (GalNAc-a-1-O-Ser/Thr). These enzymes are type II membrane proteins with a GT-A type catalytic domain and a lectin domain located on the lumen side of the Golgi apparatus. In human, there are 15 isozymes of pp-GalNAc-Ts, representing the largest of all glycosyltransferase families. Each isozyme has unique but partially redundant substrate specificity for glycosylation sites on acceptor proteins. |
| >COG1215 Glycosyltransferases, probably involved in cell wall biogenesis [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.6e-25 Score=214.92 Aligned_cols=228 Identities=22% Similarity=0.268 Sum_probs=167.3
Q ss_pred CceEEEEEeccCCCC-ChHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCcchHHHHHHHHHHcCCCcEEEEEc-CCCC
Q 019818 65 EKYISLIIPAFNEEH-RLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILL-GRNH 142 (335)
Q Consensus 65 ~~~vsViip~~ne~~-~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~vi~~-~~~~ 142 (335)
.|+++|+||+|||++ .++++++++.+ |+++++||++|||+|+|+|.+++++...+++ .+++++.. .++.
T Consensus 53 ~p~vsviiP~ynE~~~~~~~~l~s~~~--------~dyp~~evivv~d~~~d~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 123 (439)
T COG1215 53 LPKVSVIIPAYNEEPEVLEETLESLLS--------QDYPRYEVIVVDDGSTDETYEILEELGAEYG-PNFRVIYPEKKNG 123 (439)
T ss_pred CCceEEEEecCCCchhhHHHHHHHHHh--------CCCCCceEEEECCCCChhHHHHHHHHHhhcC-cceEEEeccccCc
Confidence 588999999999998 89999988888 6888899999999999999999999999883 15666644 5789
Q ss_pred ChHHHHHHHHHhcCCCEEEEEeCCCCCCcchHHHHHHHHHHhccccccCCCcccccccccccCCCeeeeecchhhhhHhh
Q 019818 143 GKGEAIRKGMLHSRGELLLMLDADGATKVTDLEKLESQIHAVGRKEYNHGDSVTVDSTFRISDIPIAAFGSRAHLEEKAL 222 (335)
Q Consensus 143 Gk~~aln~g~~~a~~d~v~~~DaD~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~g~~~~~~~~~~ 222 (335)
||++|+|.|+..+++|+|+++|||+.++||+|.+++..|.+.+.. .++|..........
T Consensus 124 gK~~al~~~l~~~~~d~V~~~DaD~~~~~d~l~~~~~~f~~~~~~---------------------~v~~~~~~~~~~~~ 182 (439)
T COG1215 124 GKAGALNNGLKRAKGDVVVILDADTVPEPDALRELVSPFEDPPVG---------------------AVVGTPRIRNRPDP 182 (439)
T ss_pred cchHHHHHHHhhcCCCEEEEEcCCCCCChhHHHHHHhhhcCCCee---------------------EEeCCceeeecCCh
Confidence 999999999999999999999999999999999999999765432 23333321111000
Q ss_pred hhhhhhHHHHHHHH----H-HHHHHHhCCCCccCCCceeeeeHHHHHHhhhhhhhccccchHHHHHHhHHcCCCEEEee-
Q 019818 223 ATRKWYRNFLMKGF----H-LVVILTAGPGIRDTQCGFKMFTRAAARKLFTNIRLKRWCFDVELVYLCKRFGIPIIEIS- 296 (335)
Q Consensus 223 ~~~~~~~~~~~~~~----~-~~~~~~~~~~~~~~~~g~~~~~r~~l~~i~~~~~~~~~~~D~el~~r~~~~G~~i~~~p- 296 (335)
..+..+.....+ . ...............|++.++||+++++++ ++.....+||.+++.++..+|+++.++|
T Consensus 183 --~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~G~~~~~rr~aL~~~g-~~~~~~i~ED~~lt~~l~~~G~~~~~~~~ 259 (439)
T COG1215 183 --SNLLGRIQAIEYLSAFYFRLRAASKGGLISFLSGSSSAFRRSALEEVG-GWLEDTITEDADLTLRLHLRGYRVVYVPE 259 (439)
T ss_pred --hhhcchhcchhhhhhHHHhhhhhhhcCCeEEEcceeeeEEHHHHHHhC-CCCCCceeccHHHHHHHHHCCCeEEEeec
Confidence 011111111111 1 111111112344455667899999999994 4555677889999999999999999997
Q ss_pred -eEEEecCCC-cccccchHHHHHHHHHHHhh
Q 019818 297 -VNWSEIPGS-KVNPLSIPNMLWELALMSVG 325 (335)
Q Consensus 297 -~~~~~~~~s-~~~~~~~~~~~~~~~~i~~~ 325 (335)
+.+.+.+.+ +..++|..|+..+.++....
T Consensus 260 ~~~~~~~p~t~~~~~~Qr~RW~~g~~~~~~~ 290 (439)
T COG1215 260 AIVWTEAPETLKELWRQRLRWARGGLQVLLL 290 (439)
T ss_pred ceEeeeCcccHHHHHHHHHHHHcccceeeeh
Confidence 467766666 34557777887777766653
|
|
| >cd06435 CESA_NdvC_like NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.9e-25 Score=196.63 Aligned_cols=219 Identities=13% Similarity=0.101 Sum_probs=145.3
Q ss_pred EEEEeccCCC-CChHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCcchH-HHHHHHHHHcCCCcEEEEEcCCCCC-hH
Q 019818 69 SLIIPAFNEE-HRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTK-RVAFDFVRKYTVDNVRIILLGRNHG-KG 145 (335)
Q Consensus 69 sViip~~ne~-~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~-~~~~~~~~~~~~~~i~vi~~~~~~G-k~ 145 (335)
|||||+|||+ +.|.++|+++.. |.++++||+||||+|+|+|. +.++++.++++. +++++...++.| |+
T Consensus 1 siiip~~ne~~~~l~~~l~sl~~--------q~~~~~eiiVvdd~s~D~t~~~~i~~~~~~~~~-~i~~i~~~~~~G~~~ 71 (236)
T cd06435 1 SIHVPCYEEPPEMVKETLDSLAA--------LDYPNFEVIVIDNNTKDEALWKPVEAHCAQLGE-RFRFFHVEPLPGAKA 71 (236)
T ss_pred CeeEeeCCCcHHHHHHHHHHHHh--------CCCCCcEEEEEeCCCCchhHHHHHHHHHHHhCC-cEEEEEcCCCCCCch
Confidence 6999999998 688899988876 56778999999999999985 677777666542 678888877778 79
Q ss_pred HHHHHHHHhcC--CCEEEEEeCCCCCCcchHHHHHHHHHHhccccccCCCcccccccccccCCCeeeeecchhhhhHhhh
Q 019818 146 EAIRKGMLHSR--GELLLMLDADGATKVTDLEKLESQIHAVGRKEYNHGDSVTVDSTFRISDIPIAAFGSRAHLEEKALA 223 (335)
Q Consensus 146 ~aln~g~~~a~--~d~v~~~DaD~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~g~~~~~~~~~~~ 223 (335)
+|+|.|++.+. +|+|+++|+|+.++|++|.+++..+++ ++. ++|.|........
T Consensus 72 ~a~n~g~~~a~~~~d~i~~lD~D~~~~~~~l~~l~~~~~~-~~~--------------------~~v~~~~~~~~~~--- 127 (236)
T cd06435 72 GALNYALERTAPDAEIIAVIDADYQVEPDWLKRLVPIFDD-PRV--------------------GFVQAPQDYRDGE--- 127 (236)
T ss_pred HHHHHHHHhcCCCCCEEEEEcCCCCcCHHHHHHHHHHhcC-CCe--------------------eEEecCccccCCC---
Confidence 99999999986 699999999999999999999999853 332 3444422111110
Q ss_pred hhhhhHHHHHHHHHHHHHH--H--hCCCCccCCCceeeeeHHHHHHhhhhhhhccccchHHHHHHhHHcCCCEEEeee--
Q 019818 224 TRKWYRNFLMKGFHLVVIL--T--AGPGIRDTQCGFKMFTRAAARKLFTNIRLKRWCFDVELVYLCKRFGIPIIEISV-- 297 (335)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~--~--~~~~~~~~~~g~~~~~r~~l~~i~~~~~~~~~~~D~el~~r~~~~G~~i~~~p~-- 297 (335)
...+.......+...+.. . .........|++.++||++++++++. ....+.+|.+++.|+.+.|+++.+.|-
T Consensus 128 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~rr~~~~~iGgf-~~~~~~eD~dl~~r~~~~G~~~~~~~~~~ 205 (236)
T cd06435 128 -ESLFKRMCYAEYKGFFDIGMVSRNERNAIIQHGTMCLIRRSALDDVGGW-DEWCITEDSELGLRMHEAGYIGVYVAQSY 205 (236)
T ss_pred -ccHHHHHHhHHHHHHHHHHhccccccCceEEecceEEEEHHHHHHhCCC-CCccccchHHHHHHHHHCCcEEEEcchhh
Confidence 011111111111111100 0 01112223455679999999999433 233467899999999999999999983
Q ss_pred EEEecCCCcc-cccchHHHHHHHHHH
Q 019818 298 NWSEIPGSKV-NPLSIPNMLWELALM 322 (335)
Q Consensus 298 ~~~~~~~s~~-~~~~~~~~~~~~~~i 322 (335)
.+...+.+-. ...+..|+..+.++.
T Consensus 206 ~~~~~~~~~~~~~~q~~rw~~g~~~~ 231 (236)
T cd06435 206 GHGLIPDTFEAFKKQRFRWAYGAVQI 231 (236)
T ss_pred ccCcCcccHHHHHHHHHHHhcchhhh
Confidence 3333333322 223444555444443
|
NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. Bradyrhizobium japonicum synthesizes periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans during growth under hypoosmotic conditions. Two genes (ndvB, ndvC) are involved in the beta-(1, 3), beta-(1,6)-glucan synthesis. The ndvC mutant strain resulted in synthesis of altered cyclic beta-glucans composed almost entirely of beta-(1, 3)-glycosyl linkages. The periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans function for osmoregulation. The ndvC mutation also affects the ability of the bacteria to establish a successful symbiotic interaction with host plant. Thus, the beta-glucans may function as suppressors of a host defense response. |
| >PRK14716 bacteriophage N4 adsorption protein B; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.6e-24 Score=206.39 Aligned_cols=202 Identities=18% Similarity=0.180 Sum_probs=139.5
Q ss_pred CCceEEEEEeccCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCcchHHHHHHHHHHcCCCcEEEEEcC--CC
Q 019818 64 AEKYISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLG--RN 141 (335)
Q Consensus 64 ~~~~vsViip~~ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~vi~~~--~~ 141 (335)
+.|+++|+||+|||++.|+++|++++.+ ++|+++||+|++|+|+|+|.+.++++++++| +++++..+ ..
T Consensus 64 ~~p~vaIlIPA~NE~~vI~~~l~s~L~~-------ldY~~~eIiVv~d~ndd~T~~~v~~l~~~~p--~v~~vv~~~~gp 134 (504)
T PRK14716 64 PEKRIAIFVPAWREADVIGRMLEHNLAT-------LDYENYRIFVGTYPNDPATLREVDRLAARYP--RVHLVIVPHDGP 134 (504)
T ss_pred CCCceEEEEeccCchhHHHHHHHHHHHc-------CCCCCeEEEEEECCCChhHHHHHHHHHHHCC--CeEEEEeCCCCC
Confidence 3678999999999999999999997653 4678999999999999999999999999999 56644433 23
Q ss_pred CChHHHHHHHHHhc------CC---CEEEEEeCCCCCCcchHHHHHHHHHHhccccccCCCcccccccccccCCCeeeee
Q 019818 142 HGKGEAIRKGMLHS------RG---ELLLMLDADGATKVTDLEKLESQIHAVGRKEYNHGDSVTVDSTFRISDIPIAAFG 212 (335)
Q Consensus 142 ~Gk~~aln~g~~~a------~~---d~v~~~DaD~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~g 212 (335)
.||+.|+|.|++.+ +| |+++++|||+.++|+.|..+...+. +. ++|..
T Consensus 135 ~~Ka~aLN~~l~~~~~~e~~~G~~~d~vvi~DAD~~v~Pd~Lr~~~~~~~---~~--------------------~~VQ~ 191 (504)
T PRK14716 135 TSKADCLNWIYQAIFAFERERGIRFAIIVLHDAEDVIHPLELRLYNYLLP---RH--------------------DFVQL 191 (504)
T ss_pred CCHHHHHHHHHHHHHHhhhhcCCCcCEEEEEcCCCCcCccHHHHHHhhcC---CC--------------------CEEec
Confidence 56999999999764 45 9999999999999999988765542 22 23322
Q ss_pred cchhh--hhHhhhhhhhhHHHHHHH-HHHHHHHHhCCCCccCCCceeeeeHHHHHHhh----h-hhhhccccchHHHHHH
Q 019818 213 SRAHL--EEKALATRKWYRNFLMKG-FHLVVILTAGPGIRDTQCGFKMFTRAAARKLF----T-NIRLKRWCFDVELVYL 284 (335)
Q Consensus 213 ~~~~~--~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~r~~l~~i~----~-~~~~~~~~~D~el~~r 284 (335)
..... .........+...+.... .....+...+..+. ..|...+|||++++++. + .+.....+||.|++.|
T Consensus 192 pv~~~~~~~~~~~ag~y~~ef~~~~~~~l~~r~~LG~~~~-~~Gtg~afRR~aLe~l~~~~GG~~fd~~sLTED~dLglR 270 (504)
T PRK14716 192 PVFSLPRDWGEWVAGTYMDEFAESHLKDLPVREALGGLIP-SAGVGTAFSRRALERLAAERGGQPFDSDSLTEDYDIGLR 270 (504)
T ss_pred ceeccCCchhHHHHHHHHHHHHHHHHHHHHHHHhcCCccc-cCCeeEEeEHHHHHHHHhhcCCCCCCCCCcchHHHHHHH
Confidence 11110 111111111111111111 11111222332222 23445699999999982 2 2556778999999999
Q ss_pred hHHcCCCEEEeeeE
Q 019818 285 CKRFGIPIIEISVN 298 (335)
Q Consensus 285 ~~~~G~~i~~~p~~ 298 (335)
+..+|+++.++|..
T Consensus 271 L~~~G~rv~y~p~a 284 (504)
T PRK14716 271 LKRAGFRQIFVRVR 284 (504)
T ss_pred HHHCCCEEEEeccc
Confidence 99999999999843
|
|
| >cd06439 CESA_like_1 CESA_like_1 is a member of the cellulose synthase (CESA) superfamily | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.2e-25 Score=196.95 Aligned_cols=194 Identities=19% Similarity=0.239 Sum_probs=141.9
Q ss_pred CCCceEEEEEeccCCCCChHHHHHHHHHHHHHhhhcCCCCc--eEEEEEECCCCcchHHHHHHHHHHcCCCcEEEEEcCC
Q 019818 63 PAEKYISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFT--YEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGR 140 (335)
Q Consensus 63 ~~~~~vsViip~~ne~~~l~~~l~sl~~~~~~~~~~~~~~~--~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~vi~~~~ 140 (335)
...|++|||||+|||+..|.++|+++.++ .+++ +||||+||+|+|+|.++++++..+ +++++..++
T Consensus 26 ~~~~~isVvip~~n~~~~l~~~l~si~~q--------~~~~~~~eiivvdd~s~d~t~~~~~~~~~~----~v~~i~~~~ 93 (251)
T cd06439 26 AYLPTVTIIIPAYNEEAVIEAKLENLLAL--------DYPRDRLEIIVVSDGSTDGTAEIAREYADK----GVKLLRFPE 93 (251)
T ss_pred CCCCEEEEEEecCCcHHHHHHHHHHHHhC--------cCCCCcEEEEEEECCCCccHHHHHHHHhhC----cEEEEEcCC
Confidence 45678999999999999999999999874 3333 899999999999999999988654 588898989
Q ss_pred CCChHHHHHHHHHhcCCCEEEEEeCCCCCCcchHHHHHHHHHHhccccccCCCcccccccccccCCCeeeeecchhhhhH
Q 019818 141 NHGKGEAIRKGMLHSRGELLLMLDADGATKVTDLEKLESQIHAVGRKEYNHGDSVTVDSTFRISDIPIAAFGSRAHLEEK 220 (335)
Q Consensus 141 ~~Gk~~aln~g~~~a~~d~v~~~DaD~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~g~~~~~~~~ 220 (335)
|.|++.|+|.|++.+++|+++++|+|+.++++++.++++.+.+ ++. +++.|........
T Consensus 94 ~~g~~~a~n~gi~~a~~d~i~~lD~D~~~~~~~l~~l~~~~~~-~~~--------------------~~v~~~~~~~~~~ 152 (251)
T cd06439 94 RRGKAAALNRALALATGEIVVFTDANALLDPDALRLLVRHFAD-PSV--------------------GAVSGELVIVDGG 152 (251)
T ss_pred CCChHHHHHHHHHHcCCCEEEEEccccCcCHHHHHHHHHHhcC-CCc--------------------cEEEeEEEecCCc
Confidence 9999999999999999999999999999999999999999953 222 4555544322211
Q ss_pred h-hhhhhhhHHHHHHHHHHHHHHHhCCCCccCCCceeeeeHHHHHHhhhhhhhccccchHHHHHHhHHcCCCEEEee
Q 019818 221 A-LATRKWYRNFLMKGFHLVVILTAGPGIRDTQCGFKMFTRAAARKLFTNIRLKRWCFDVELVYLCKRFGIPIIEIS 296 (335)
Q Consensus 221 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~r~~l~~i~~~~~~~~~~~D~el~~r~~~~G~~i~~~p 296 (335)
. ......+..+..... .. .... .......|++.+++|++++. .....+.+|.+++.++..+|+++.++|
T Consensus 153 ~~~~~~~~~~~~~~~~~-~~-~~~~-~~~~~~~g~~~~~rr~~~~~----~~~~~~~eD~~l~~~~~~~G~~~~~~~ 222 (251)
T cd06439 153 GSGSGEGLYWKYENWLK-RA-ESRL-GSTVGANGAIYAIRRELFRP----LPADTINDDFVLPLRIARQGYRVVYEP 222 (251)
T ss_pred ccchhHHHHHHHHHHHH-HH-HHhc-CCeeeecchHHHhHHHHhcC----CCcccchhHHHHHHHHHHcCCeEEecc
Confidence 0 001111111111111 11 1111 12333555666899998882 233345679999999999999999998
|
This is a subfamily of cellulose synthase (CESA) superfamily. CESA superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members of the superfamily include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins. |
| >cd04184 GT2_RfbC_Mx_like Myxococcus xanthus RfbC like proteins are required for O-antigen biosynthesis | Back alignment and domain information |
|---|
Probab=99.93 E-value=4e-25 Score=189.64 Aligned_cols=192 Identities=17% Similarity=0.235 Sum_probs=139.8
Q ss_pred ceEEEEEeccCCC-CChHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCcchH-HHHHHHHHHcCCCcEEEEEcCCCCC
Q 019818 66 KYISLIIPAFNEE-HRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTK-RVAFDFVRKYTVDNVRIILLGRNHG 143 (335)
Q Consensus 66 ~~vsViip~~ne~-~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~-~~~~~~~~~~~~~~i~vi~~~~~~G 143 (335)
|++|||||+||++ +.+++||+|+++ |++.++||+||||||+|++. ++++.+..+.+ +++++..+++.|
T Consensus 1 p~vsiii~~~n~~~~~l~~~l~sl~~--------q~~~~~eiivvd~gs~d~~~~~~~~~~~~~~~--~~~~~~~~~~~g 70 (202)
T cd04184 1 PLISIVMPVYNTPEKYLREAIESVRA--------QTYPNWELCIADDASTDPEVKRVLKKYAAQDP--RIKVVFREENGG 70 (202)
T ss_pred CeEEEEEecccCcHHHHHHHHHHHHh--------CcCCCeEEEEEeCCCCChHHHHHHHHHHhcCC--CEEEEEcccCCC
Confidence 4599999999999 999999999988 56678999999999999865 45565556655 788888989999
Q ss_pred hHHHHHHHHHhcCCCEEEEEeCCCCCCcchHHHHHHHHHHhccccccCCCcccccccccccCCCeeeeecchhhhhHhhh
Q 019818 144 KGEAIRKGMLHSRGELLLMLDADGATKVTDLEKLESQIHAVGRKEYNHGDSVTVDSTFRISDIPIAAFGSRAHLEEKALA 223 (335)
Q Consensus 144 k~~aln~g~~~a~~d~v~~~DaD~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~g~~~~~~~~~~~ 223 (335)
++.|+|.|++.+++|+++++|+|+.++|++|+++++.+.++++. +++.+...........
T Consensus 71 ~~~a~n~g~~~a~~d~i~~ld~D~~~~~~~l~~~~~~~~~~~~~--------------------~~v~~~~~~~~~~~~~ 130 (202)
T cd04184 71 ISAATNSALELATGEFVALLDHDDELAPHALYEVVKALNEHPDA--------------------DLIYSDEDKIDEGGKR 130 (202)
T ss_pred HHHHHHHHHHhhcCCEEEEECCCCcCChHHHHHHHHHHHhCCCC--------------------CEEEccHHhccCCCCE
Confidence 99999999999999999999999999999999999999665544 3444433221110000
Q ss_pred hhhhhHHHHHHHHHHHHHHHhCCCCccCCCceeeeeHHHHHHhhhhhhhccccchHHHHHHhHHcCCCEEEee
Q 019818 224 TRKWYRNFLMKGFHLVVILTAGPGIRDTQCGFKMFTRAAARKLFTNIRLKRWCFDVELVYLCKRFGIPIIEIS 296 (335)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~r~~l~~i~~~~~~~~~~~D~el~~r~~~~G~~i~~~p 296 (335)
....+. ..... ...... ...+++.+++|++++++.+........+|.||+.|+.++|+++.++|
T Consensus 131 ~~~~~~----~~~~~--~~~~~~---~~~~~~~~~~r~~~~~iggf~~~~~~~eD~~l~~rl~~~g~~~~~~~ 194 (202)
T cd04184 131 SEPFFK----PDWSP--DLLLSQ---NYIGHLLVYRRSLVRQVGGFREGFEGAQDYDLVLRVSEHTDRIAHIP 194 (202)
T ss_pred eccccC----CCCCH--HHhhhc---CCccceEeEEHHHHHHhCCCCcCcccchhHHHHHHHHhccceEEEcc
Confidence 000000 00000 011111 23455668999999999433222234579999999999999999998
|
The rfbC gene encodes a predicted protein of 1,276 amino acids, which is required for O-antigen biosynthesis in Myxococcus xanthus. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. |
| >PRK10073 putative glycosyl transferase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.2e-24 Score=200.59 Aligned_cols=207 Identities=16% Similarity=0.154 Sum_probs=145.3
Q ss_pred CceEEEEEeccCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCcchHHHHHHHHHHcCCCcEEEEEcCCCCCh
Q 019818 65 EKYISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNHGK 144 (335)
Q Consensus 65 ~~~vsViip~~ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~vi~~~~~~Gk 144 (335)
.|.||||||+||+++.|++||+|+++ |++.++|||||||||+|+|.++++++.++++ ++++++. +|.|.
T Consensus 5 ~p~vSVIIP~yN~~~~L~~~l~Sl~~--------Qt~~~~EIIiVdDgStD~t~~i~~~~~~~~~--~i~vi~~-~n~G~ 73 (328)
T PRK10073 5 TPKLSIIIPLYNAGKDFRAFMESLIA--------QTWTALEIIIVNDGSTDNSVEIAKHYAENYP--HVRLLHQ-ANAGV 73 (328)
T ss_pred CCeEEEEEeccCCHHHHHHHHHHHHh--------CCCCCeEEEEEeCCCCccHHHHHHHHHhhCC--CEEEEEC-CCCCh
Confidence 46799999999999999999999988 5777999999999999999999999998888 8998875 59999
Q ss_pred HHHHHHHHHhcCCCEEEEEeCCCCCCcchHHHHHHHHHHhccccccCCCcccccccccccCCCeeeeecchhhhhHhhhh
Q 019818 145 GEAIRKGMLHSRGELLLMLDADGATKVTDLEKLESQIHAVGRKEYNHGDSVTVDSTFRISDIPIAAFGSRAHLEEKALAT 224 (335)
Q Consensus 145 ~~aln~g~~~a~~d~v~~~DaD~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~g~~~~~~~~~~~~ 224 (335)
+.|+|.|++.|+||||+++|+|+.+.|++++.+++.++++. . +++.+............
T Consensus 74 ~~arN~gl~~a~g~yi~flD~DD~~~p~~l~~l~~~~~~~~-~--------------------dvv~~~~~~~~~~~~~~ 132 (328)
T PRK10073 74 SVARNTGLAVATGKYVAFPDADDVVYPTMYETLMTMALEDD-L--------------------DVAQCNADWCFRDTGET 132 (328)
T ss_pred HHHHHHHHHhCCCCEEEEECCCCccChhHHHHHHHHHHhCC-C--------------------CEEEEccEEEEeCCCcc
Confidence 99999999999999999999999999999999999886542 1 33332211000000000
Q ss_pred hhh-------hHHHHHHHHHHHHHHHhCCCCccCCCceeeeeHHHHHHhhhhhhhccccchHHHHHHhHHcCCCEEEee-
Q 019818 225 RKW-------YRNFLMKGFHLVVILTAGPGIRDTQCGFKMFTRAAARKLFTNIRLKRWCFDVELVYLCKRFGIPIIEIS- 296 (335)
Q Consensus 225 ~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~r~~l~~i~~~~~~~~~~~D~el~~r~~~~G~~i~~~p- 296 (335)
... ..... .....+...+........ +.+.+|||+.+++...........+|.++..++...+.++.+++
T Consensus 133 ~~~~~~~~~~~~~~~-~~~~~l~~~l~~~~~~~~-~~~~l~Rr~~l~~~~~~f~~~~~~eD~~~~~~~~~~~~~v~~~~~ 210 (328)
T PRK10073 133 WQSIPSDRLRSTGVL-SGPDWLRMALSSRRWTHV-VWLGVYRRDFIVKNNIKFEPGLHHQDIPWTTEVMFNALRVRYTEQ 210 (328)
T ss_pred cccccccccccccee-chHHHHHHHHhhCCCCcc-HhHHHHHHHHHHHcCCccCCCCEeccHHHHHHHHHHCCEEEEECC
Confidence 000 00000 001111122222222222 23468999999987323333333469999999999999999997
Q ss_pred --eEEEecCCC
Q 019818 297 --VNWSEIPGS 305 (335)
Q Consensus 297 --~~~~~~~~s 305 (335)
+.|+.+++|
T Consensus 211 ~ly~Yr~~~~S 221 (328)
T PRK10073 211 SLYKYYLHDTS 221 (328)
T ss_pred CEEEEEecCCc
Confidence 344444444
|
|
| >cd04179 DPM_DPG-synthase_like DPM_DPG-synthase_like is a member of the Glycosyltransferase 2 superfamily | Back alignment and domain information |
|---|
Probab=99.93 E-value=7e-25 Score=185.39 Aligned_cols=185 Identities=32% Similarity=0.560 Sum_probs=153.6
Q ss_pred EEEeccCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCcchHHHHHHHHHHcCCCcEEEEEcCCCCChHHHHH
Q 019818 70 LIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNHGKGEAIR 149 (335)
Q Consensus 70 Viip~~ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~vi~~~~~~Gk~~aln 149 (335)
||||+||+++.+.+||+++.++.+ +..++||+|+||+|+|+|.+.++++..+.+ .++++..++|.|+++|+|
T Consensus 1 iii~~~n~~~~l~~~l~sl~~~~~------~~~~~eiivvd~~s~d~~~~~~~~~~~~~~--~~~~~~~~~n~G~~~a~n 72 (185)
T cd04179 1 VVIPAYNEEENIPELVERLLAVLE------EGYDYEIIVVDDGSTDGTAEIARELAARVP--RVRVIRLSRNFGKGAAVR 72 (185)
T ss_pred CeecccChHhhHHHHHHHHHHHhc------cCCCEEEEEEcCCCCCChHHHHHHHHHhCC--CeEEEEccCCCCccHHHH
Confidence 689999999999999999998643 145799999999999999999999988887 678999999999999999
Q ss_pred HHHHhcCCCEEEEEeCCCCCCcchHHHHHHHHHHhccccccCCCcccccccccccCCCeeeeecchhhhhHhhhhhhhhH
Q 019818 150 KGMLHSRGELLLMLDADGATKVTDLEKLESQIHAVGRKEYNHGDSVTVDSTFRISDIPIAAFGSRAHLEEKALATRKWYR 229 (335)
Q Consensus 150 ~g~~~a~~d~v~~~DaD~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~g~~~~~~~~~~~~~~~~~ 229 (335)
.|++.++||+++++|+|+.+.|++|.+++..+.+.+ . ++|+|.+...... ....+.+
T Consensus 73 ~g~~~a~gd~i~~lD~D~~~~~~~l~~l~~~~~~~~-~--------------------~~v~g~~~~~~~~--~~~~~~~ 129 (185)
T cd04179 73 AGFKAARGDIVVTMDADLQHPPEDIPKLLEKLLEGG-A--------------------DVVIGSRFVRGGG--AGMPLLR 129 (185)
T ss_pred HHHHHhcCCEEEEEeCCCCCCHHHHHHHHHHHhccC-C--------------------cEEEEEeecCCCc--ccchHHH
Confidence 999999999999999999999999999999865432 1 6788877644322 2345566
Q ss_pred HHHHHHHHHHHHHHhCCCCccCCCceeeeeHHHHHHhhhhhhhccccchHHHHHHh
Q 019818 230 NFLMKGFHLVVILTAGPGIRDTQCGFKMFTRAAARKLFTNIRLKRWCFDVELVYLC 285 (335)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~r~~l~~i~~~~~~~~~~~D~el~~r~ 285 (335)
.+.............+..+....|++.+++|++++++.......+|.+|.|+++|+
T Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~i~~~~~~~~~~~~~~~~~~~ 185 (185)
T cd04179 130 RLGSRLFNFLIRLLLGVRISDTQSGFRLFRREVLEALLSLLESNGFEFGLELLVGA 185 (185)
T ss_pred HHHHHHHHHHHHHHcCCCCcCCCCceeeeHHHHHHHHHhhccccCcceeeEeeecC
Confidence 66666666666766778888889999999999999996455557788888887764
|
DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi, and animals, have no transmembrane region, suggesting the ex |
| >PRK13915 putative glucosyl-3-phosphoglycerate synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.8e-24 Score=196.97 Aligned_cols=228 Identities=17% Similarity=0.175 Sum_probs=154.3
Q ss_pred CCceEEEEEeccCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCcchHHHHHHHHHHcCCCcEEEE-EcCCCC
Q 019818 64 AEKYISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRII-LLGRNH 142 (335)
Q Consensus 64 ~~~~vsViip~~ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~vi-~~~~~~ 142 (335)
..+++|||||+|||++.|.++|+++.+++.. ....|||||||||+|+|.++++++..+.-. ...++ ..+.|.
T Consensus 29 ~~~~vSVVIPayNee~~I~~~l~sl~~~~~~------~~~~EIIVVDDgStD~T~~ia~~~~~~v~~-~~~~~~~~~~n~ 101 (306)
T PRK13915 29 AGRTVSVVLPALNEEETVGKVVDSIRPLLME------PLVDELIVIDSGSTDATAERAAAAGARVVS-REEILPELPPRP 101 (306)
T ss_pred CCCCEEEEEecCCcHHHHHHHHHHHHHHhcc------CCCcEEEEEeCCCccHHHHHHHHhcchhhc-chhhhhccccCC
Confidence 4578999999999999999999999885431 335799999999999999999887543210 11222 236789
Q ss_pred ChHHHHHHHHHhcCCCEEEEEeCCCC-CCcchHHHHHHHHHHhccccccCCCcccccccccccCCCeeeeecchhhhh-H
Q 019818 143 GKGEAIRKGMLHSRGELLLMLDADGA-TKVTDLEKLESQIHAVGRKEYNHGDSVTVDSTFRISDIPIAAFGSRAHLEE-K 220 (335)
Q Consensus 143 Gk~~aln~g~~~a~~d~v~~~DaD~~-~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~g~~~~~~~-~ 220 (335)
||+.|+|.|+..++||+|+++|+|+. ++|+++.++++.+..+++. ++|.|....... .
T Consensus 102 Gkg~A~~~g~~~a~gd~vv~lDaD~~~~~p~~l~~l~~~l~~~~~~--------------------~~V~g~~~r~~~~~ 161 (306)
T PRK13915 102 GKGEALWRSLAATTGDIVVFVDADLINFDPMFVPGLLGPLLTDPGV--------------------HLVKAFYRRPLRVS 161 (306)
T ss_pred CHHHHHHHHHHhcCCCEEEEEeCccccCCHHHHHHHHHHHHhCCCc--------------------eEEEEEeccccccc
Confidence 99999999999999999999999996 8999999999999754433 566664221100 0
Q ss_pred -h---hhhhhhhHHHHHHHHHHHHHHHhCCCCccCCCceeeeeHHHHHHhhhhhhhccccchHHHHHHhHH-cCC-CEEE
Q 019818 221 -A---LATRKWYRNFLMKGFHLVVILTAGPGIRDTQCGFKMFTRAAARKLFTNIRLKRWCFDVELVYLCKR-FGI-PIIE 294 (335)
Q Consensus 221 -~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~r~~l~~i~~~~~~~~~~~D~el~~r~~~-~G~-~i~~ 294 (335)
. .......+......++.....+ ..+.++.+|++++||++++++. . ..+|+++.++...+.+ .|+ ++.+
T Consensus 162 ~~~~~~~~gr~~~~~~~~l~~~~~~~l--~~i~dp~sG~~a~rr~~l~~l~--~-~~~yg~e~~~l~~~~~~~g~~~i~~ 236 (306)
T PRK13915 162 GGVDATGGGRVTELVARPLLNLLRPEL--AGFVQPLGGEYAGRRELLESLP--F-VPGYGVEIGLLIDTLDRLGLDAIAQ 236 (306)
T ss_pred cccCcCCCCchHHHHHHHHHHHHHHhh--hcccCcchHhHHHHHHHHHhCC--C-CCCCeehHHHHHHHHHHhCcCceEE
Confidence 0 0000011111111122111111 3566888999999999999872 2 2567789999999874 687 8999
Q ss_pred eeeEEEecCCCcccccchHHHHHHHHHHHhh
Q 019818 295 ISVNWSEIPGSKVNPLSIPNMLWELALMSVG 325 (335)
Q Consensus 295 ~p~~~~~~~~s~~~~~~~~~~~~~~~~i~~~ 325 (335)
+++..+.... .......+|....+...+.
T Consensus 237 V~l~~r~h~~--~~~~~~~~m~~~i~~~~~~ 265 (306)
T PRK13915 237 VDLGVRAHRN--QPLRALGRMARQIIATALS 265 (306)
T ss_pred EEecccccCC--CCHHHHHHHHHHHHHHHHH
Confidence 9876554432 2344555555555544433
|
|
| >cd04187 DPM1_like_bac Bacterial DPM1_like enzymes are related to eukaryotic DPM1 | Back alignment and domain information |
|---|
Probab=99.93 E-value=5e-24 Score=179.99 Aligned_cols=175 Identities=23% Similarity=0.429 Sum_probs=144.0
Q ss_pred EEEeccCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCcchHHHHHHHHHHcCCCcEEEEEcCCCCChHHHHH
Q 019818 70 LIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNHGKGEAIR 149 (335)
Q Consensus 70 Viip~~ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~vi~~~~~~Gk~~aln 149 (335)
||||+||+++.|.++++++..+..+ +..++||+||||||+|+|.++++++.++++ +++++...+|.|++.|+|
T Consensus 1 viIp~~n~~~~l~~~l~sl~~~~~~-----~~~~~eiivvdd~s~d~t~~~~~~~~~~~~--~i~~i~~~~n~G~~~a~n 73 (181)
T cd04187 1 IVVPVYNEEENLPELYERLKAVLES-----LGYDYEIIFVDDGSTDRTLEILRELAARDP--RVKVIRLSRNFGQQAALL 73 (181)
T ss_pred CEEeecCchhhHHHHHHHHHHHHHh-----cCCCeEEEEEeCCCCccHHHHHHHHHhhCC--CEEEEEecCCCCcHHHHH
Confidence 6999999999999999999887663 567899999999999999999999988887 899999989999999999
Q ss_pred HHHHhcCCCEEEEEeCCCCCCcchHHHHHHHHHHhccccccCCCcccccccccccCCCeeeeecchhhhhHhhhhhhhhH
Q 019818 150 KGMLHSRGELLLMLDADGATKVTDLEKLESQIHAVGRKEYNHGDSVTVDSTFRISDIPIAAFGSRAHLEEKALATRKWYR 229 (335)
Q Consensus 150 ~g~~~a~~d~v~~~DaD~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~g~~~~~~~~~~~~~~~~~ 229 (335)
.|++.+.+|+++++|+|+.+++++|.++++.++++. ++|.|.+.... .....
T Consensus 74 ~g~~~a~~d~i~~~D~D~~~~~~~l~~l~~~~~~~~----------------------~~v~g~~~~~~------~~~~~ 125 (181)
T cd04187 74 AGLDHARGDAVITMDADLQDPPELIPEMLAKWEEGY----------------------DVVYGVRKNRK------ESWLK 125 (181)
T ss_pred HHHHhcCCCEEEEEeCCCCCCHHHHHHHHHHHhCCC----------------------cEEEEEecCCc------chHHH
Confidence 999999999999999999999999999999864322 67888775432 24455
Q ss_pred HHHHHHHHHHHHHHhCCCCccCCCceeeeeHHHHHHhhhhhhhccccchH
Q 019818 230 NFLMKGFHLVVILTAGPGIRDTQCGFKMFTRAAARKLFTNIRLKRWCFDV 279 (335)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~r~~l~~i~~~~~~~~~~~D~ 279 (335)
.+....+...........+.+..|++.+|+|++++++.+..+...|..+.
T Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~i~~~d~~~~~~~~~ 175 (181)
T cd04187 126 RLTSKLFYRLINKLSGVDIPDNGGDFRLMDRKVVDALLLLPERHRFLRGL 175 (181)
T ss_pred HHHHHHHHHHHHHHcCCCCCCCCCCEEEEcHHHHHHHHhcCCCCccHHHH
Confidence 55555555556666778888999999999999999995444444444333
|
A family of bacterial enzymes related to eukaryotic DPM1; Although the mechanism of eukaryotic enzyme is well studied, the mechanism of the bacterial enzymes is not well understood. The eukaryotic DPM1 is the catalytic subunit of eukaryotic Dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. The enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. This protein family belongs to Glycosyltransferase 2 superfamily. |
| >PF13641 Glyco_tranf_2_3: Glycosyltransferase like family 2; PDB: 4FIY_B 4FIX_A | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.6e-26 Score=201.02 Aligned_cols=208 Identities=24% Similarity=0.255 Sum_probs=125.6
Q ss_pred ceEEEEEeccCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCcchHHHHHHHHHHcCCCcEEEEEcCCCCC--
Q 019818 66 KYISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNHG-- 143 (335)
Q Consensus 66 ~~vsViip~~ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~vi~~~~~~G-- 143 (335)
|+|+||||+|||++.+.++|++++.+ +++++||+|+||+|+|++.+.++++.+.+|..+++++..+.+.|
T Consensus 1 P~v~Vvip~~~~~~~l~~~l~sl~~~--------~~~~~~v~vvd~~~~~~~~~~~~~~~~~~~~~~v~vi~~~~~~g~~ 72 (228)
T PF13641_consen 1 PRVSVVIPAYNEDDVLRRCLESLLAQ--------DYPRLEVVVVDDGSDDETAEILRALAARYPRVRVRVIRRPRNPGPG 72 (228)
T ss_dssp --EEEE--BSS-HHHHHHHHHHHTTS--------HHHTEEEEEEEE-SSS-GCTTHHHHHHTTGG-GEEEEE----HHHH
T ss_pred CEEEEEEEecCCHHHHHHHHHHHHcC--------CCCCeEEEEEECCCChHHHHHHHHHHHHcCCCceEEeecCCCCCcc
Confidence 45999999999999999999999874 34579999999999999999999999998855678888876555
Q ss_pred -hHHHHHHHHHhcCCCEEEEEeCCCCCCcchHHHHHHHHHHhccccccCCCcccccccccccCCCeeeeecchhhhhHhh
Q 019818 144 -KGEAIRKGMLHSRGELLLMLDADGATKVTDLEKLESQIHAVGRKEYNHGDSVTVDSTFRISDIPIAAFGSRAHLEEKAL 222 (335)
Q Consensus 144 -k~~aln~g~~~a~~d~v~~~DaD~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~g~~~~~~~~~~ 222 (335)
|+.++|.|++.+++|+|+++|+|+.++|++|.++++.+ ..++. .+|.|..........
T Consensus 73 ~k~~a~n~~~~~~~~d~i~~lD~D~~~~p~~l~~~~~~~-~~~~~--------------------~~v~~~~~~~~~~~~ 131 (228)
T PF13641_consen 73 GKARALNEALAAARGDYILFLDDDTVLDPDWLERLLAAF-ADPGV--------------------GAVGGPVFPDNDRNW 131 (228)
T ss_dssp HHHHHHHHHHHH---SEEEEE-SSEEE-CHHHHHHHHHH-HBSS----------------------EEEEEEEETTCCCE
T ss_pred hHHHHHHHHHHhcCCCEEEEECCCcEECHHHHHHHHHHH-HhCCC--------------------CeEeeeEeecCCCCH
Confidence 89999999999999999999999999999999999999 44443 344443322111100
Q ss_pred hhhhhhHHHHHHHHHHHHHHHhCCCCccCCCceeeeeHHHHHHhhhhhhhccccchHHHHHHhHHcCCCEEEee--eEEE
Q 019818 223 ATRKWYRNFLMKGFHLVVILTAGPGIRDTQCGFKMFTRAAARKLFTNIRLKRWCFDVELVYLCKRFGIPIIEIS--VNWS 300 (335)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~r~~l~~i~~~~~~~~~~~D~el~~r~~~~G~~i~~~p--~~~~ 300 (335)
.............................|++.+|||++++++++... ....+|.+++.|+.++|+++.+.| ..++
T Consensus 132 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~rr~~~~~~g~fd~-~~~~eD~~l~~r~~~~G~~~~~~~~~~v~~ 209 (228)
T PF13641_consen 132 -LTRLQDLFFARWHLRFRSGRRALGVAFLSGSGMLFRRSALEEVGGFDP-FILGEDFDLCLRLRAAGWRIVYAPDALVYH 209 (228)
T ss_dssp -EEE-TT--S-EETTTS-TT-B----S-B--TEEEEEHHHHHHH-S--S-SSSSHHHHHHHHHHHTT--EEEEEEEEEEE
T ss_pred -HHHHHHHHHhhhhhhhhhhhcccceeeccCcEEEEEHHHHHHhCCCCC-CCcccHHHHHHHHHHCCCcEEEECCcEEEE
Confidence 000000000000000000001111222345678999999999943222 455689999999999999999998 3444
Q ss_pred ecCC
Q 019818 301 EIPG 304 (335)
Q Consensus 301 ~~~~ 304 (335)
+.+.
T Consensus 210 ~~~~ 213 (228)
T PF13641_consen 210 EEPS 213 (228)
T ss_dssp --SS
T ss_pred eCCC
Confidence 4343
|
|
| >cd02525 Succinoglycan_BP_ExoA ExoA is involved in the biosynthesis of succinoglycan | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.1e-24 Score=190.92 Aligned_cols=228 Identities=19% Similarity=0.135 Sum_probs=155.0
Q ss_pred EEEEEeccCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCcchHHHHHHHHHHcCCCcEEEEEcCCCCChHHH
Q 019818 68 ISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNHGKGEA 147 (335)
Q Consensus 68 vsViip~~ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~vi~~~~~~Gk~~a 147 (335)
+|||||+||+++.+.++|+++.++.+ +..++|||||||+|+|+|.+.++++.++.+ .++++..+ +.|++.|
T Consensus 2 ~sIiip~~n~~~~l~~~l~sl~~q~~------~~~~~evivvd~~s~d~~~~~~~~~~~~~~--~v~~i~~~-~~~~~~a 72 (249)
T cd02525 2 VSIIIPVRNEEKYIEELLESLLNQSY------PKDLIEIIVVDGGSTDGTREIVQEYAAKDP--RIRLIDNP-KRIQSAG 72 (249)
T ss_pred EEEEEEcCCchhhHHHHHHHHHhccC------CCCccEEEEEeCCCCccHHHHHHHHHhcCC--eEEEEeCC-CCCchHH
Confidence 89999999999999999999987321 226899999999999999999999988766 78888765 5789999
Q ss_pred HHHHHHhcCCCEEEEEeCCCCCCcchHHHHHHHHHHhccccccCCCcccccccccccCCCeeeeecchhhhhHhhhhhhh
Q 019818 148 IRKGMLHSRGELLLMLDADGATKVTDLEKLESQIHAVGRKEYNHGDSVTVDSTFRISDIPIAAFGSRAHLEEKALATRKW 227 (335)
Q Consensus 148 ln~g~~~a~~d~v~~~DaD~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~g~~~~~~~~~~~~~~~ 227 (335)
+|.|++.+++|+++++|+|+.++|++|+++++.+.+.+ . +++.|........... ..
T Consensus 73 ~N~g~~~a~~d~v~~lD~D~~~~~~~l~~~~~~~~~~~-~--------------------~~v~~~~~~~~~~~~~--~~ 129 (249)
T cd02525 73 LNIGIRNSRGDIIIRVDAHAVYPKDYILELVEALKRTG-A--------------------DNVGGPMETIGESKFQ--KA 129 (249)
T ss_pred HHHHHHHhCCCEEEEECCCccCCHHHHHHHHHHHhcCC-C--------------------CEEecceecCCCChHH--HH
Confidence 99999999999999999999999999999999876532 1 4555544322111000 00
Q ss_pred hHHHHHHHHHH---HHHHHhCCCCccCCCceeeeeHHHHHHhhhhhhhccccchHHHHHHhHHcCCCEEEee-eEEEecC
Q 019818 228 YRNFLMKGFHL---VVILTAGPGIRDTQCGFKMFTRAAARKLFTNIRLKRWCFDVELVYLCKRFGIPIIEIS-VNWSEIP 303 (335)
Q Consensus 228 ~~~~~~~~~~~---~~~~~~~~~~~~~~~g~~~~~r~~l~~i~~~~~~~~~~~D~el~~r~~~~G~~i~~~p-~~~~~~~ 303 (335)
........+.. ..............+++.+++|++++++..........+|.+++.|+.++|+++.++| +...+..
T Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~eD~~l~~r~~~~G~~~~~~~~~~~~~~~ 209 (249)
T cd02525 130 IAVAQSSPLGSGGSAYRGGAVKIGYVDTVHHGAYRREVFEKVGGFDESLVRNEDAELNYRLRKAGYKIWLSPDIRVYYYP 209 (249)
T ss_pred HHHHhhchhccCCccccccccccccccccccceEEHHHHHHhCCCCcccCccchhHHHHHHHHcCcEEEEcCCeEEEEcC
Confidence 00000000000 0000000001234556679999999998433222334579999999999999999998 3333332
Q ss_pred -CC-cccccchHHHHHHHHHHHhhhh
Q 019818 304 -GS-KVNPLSIPNMLWELALMSVGYR 327 (335)
Q Consensus 304 -~s-~~~~~~~~~~~~~~~~i~~~y~ 327 (335)
.| +.-+++..++..+..+....+.
T Consensus 210 ~~s~~~~~~~~~r~~~~~~~~~~~~~ 235 (249)
T cd02525 210 RSTLKKLARQYFRYGKWRARTLRKHR 235 (249)
T ss_pred CCCHHHHHHHHHHHhhhhHHHHHhCc
Confidence 22 2234566666666665555544
|
Succinoglycan Biosynthesis Protein ExoA catalyzes the formation of a beta-1,3 linkage of the second sugar (glucose) of the succinoglycan with the galactose on the lipid carrie. Succinoglycan is an acidic exopolysaccharide that is important for invasion of the nodules. Succinoglycan is a high-molecular-weight polymer composed of repeating octasaccharide units. These units are synthesized on membrane-bound isoprenoid lipid carriers, beginning with galactose followed by seven glucose molecules, and modified by the addition of acetate, succinate, and pyruvate. ExoA is a membrane protein with a transmembrance domain at c-terminus. |
| >cd06913 beta3GnTL1_like Beta 1, 3-N-acetylglucosaminyltransferase is essential for the formation of poly-N-acetyllactosamine | Back alignment and domain information |
|---|
Probab=99.92 E-value=6.4e-24 Score=184.95 Aligned_cols=202 Identities=17% Similarity=0.192 Sum_probs=138.0
Q ss_pred EEEeccCCCCChHHHHHHHHHHHHHhhhcCCCC-ceEEEEEECCCCcchHHHHHHHHHHcCCCcEEEEEc----CCCCCh
Q 019818 70 LIIPAFNEEHRLPGALDETLNYLQQRAAKDKSF-TYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILL----GRNHGK 144 (335)
Q Consensus 70 Viip~~ne~~~l~~~l~sl~~~~~~~~~~~~~~-~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~vi~~----~~~~Gk 144 (335)
||||+||+++.|++||+|+++ |.++ ++|||||||||+|+|.++++++.++++..+++++.. +.+.|.
T Consensus 1 ViIp~yn~~~~l~~~l~sl~~--------q~~~~~~eiiVvDd~S~d~t~~i~~~~~~~~~~~~~~~~~~~~~~~~~~G~ 72 (219)
T cd06913 1 IILPVHNGEQWLDECLESVLQ--------QDFEGTLELSVFNDASTDKSAEIIEKWRKKLEDSGVIVLVGSHNSPSPKGV 72 (219)
T ss_pred CEEeecCcHHHHHHHHHHHHh--------CCCCCCEEEEEEeCCCCccHHHHHHHHHHhCcccCeEEEEecccCCCCccH
Confidence 699999999999999999987 3444 699999999999999999999988766446776653 346899
Q ss_pred HHHHHHHHHhcCCCEEEEEeCCCCCCcchHHHHHHHHHHhccccccCCCcccccccccccCCCeeeeecchhh-hhHhhh
Q 019818 145 GEAIRKGMLHSRGELLLMLDADGATKVTDLEKLESQIHAVGRKEYNHGDSVTVDSTFRISDIPIAAFGSRAHL-EEKALA 223 (335)
Q Consensus 145 ~~aln~g~~~a~~d~v~~~DaD~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~g~~~~~-~~~~~~ 223 (335)
+.|+|.|++.++||+++++|+|+.++|+++.+++..+.+++. .++|.+... ..+..
T Consensus 73 ~~a~N~g~~~a~gd~i~~lD~D~~~~~~~l~~~~~~~~~~~~----------------------~~v~~~~~~~~~~~~- 129 (219)
T cd06913 73 GYAKNQAIAQSSGRYLCFLDSDDVMMPQRIRLQYEAALQHPN----------------------SIIGCQVRRIPEDST- 129 (219)
T ss_pred HHHHHHHHHhcCCCEEEEECCCccCChhHHHHHHHHHHhCCC----------------------cEEEEEEEecCcccc-
Confidence 999999999999999999999999999999999988866542 233333211 11000
Q ss_pred hhhhhHHHHHHH-HHHHHH-HHhCCCCccCCCceeeeeHHHHHHhhhhhh-hccccchHHHHHHhHHcCCCEEEee---e
Q 019818 224 TRKWYRNFLMKG-FHLVVI-LTAGPGIRDTQCGFKMFTRAAARKLFTNIR-LKRWCFDVELVYLCKRFGIPIIEIS---V 297 (335)
Q Consensus 224 ~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~g~~~~~r~~l~~i~~~~~-~~~~~~D~el~~r~~~~G~~i~~~p---~ 297 (335)
..+..+.... ...+.. ...... ........++||++++++++..+ ...+.+|.+|+.|+.++|.++.++| +
T Consensus 130 --~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~rr~~~~~~g~f~~~~~~~~eD~~l~~r~~~~g~~i~~~~~~~~ 206 (219)
T cd06913 130 --ERYTRWINTLTREQLLTQVYTSHG-PTVIMPTWFCSREWFSHVGPFDEGGKGVPEDLLFFYEHLRKGGGVYRVDRCLL 206 (219)
T ss_pred --hhhHHHHHhcCHHHHHHHHHhhcC-CccccccceeehhHHhhcCCccchhccchhHHHHHHHHHHcCCceEEEcceee
Confidence 1111111110 000111 111111 11112224799999999954322 2345689999999999999999997 3
Q ss_pred EEEecCCC
Q 019818 298 NWSEIPGS 305 (335)
Q Consensus 298 ~~~~~~~s 305 (335)
.|+.+++|
T Consensus 207 ~yr~~~~s 214 (219)
T cd06913 207 LYRYHPGA 214 (219)
T ss_pred eeeecCCC
Confidence 44444443
|
This family includes human Beta3GnTL1 and related eukaryotic proteins. Human Beta3GnTL1 is a putative beta-1,3-N-acetylglucosaminyltransferase. Beta3GnTL1 is expressed at various levels in most of tissues examined. Beta 1, 3-N-acetylglucosaminyltransferase has been found to be essential for the formation of poly-N-acetyllactosamine. Poly-N-acetyllactosamine is a unique carbohydrate composed of N-acetyllactosamine repeats. It is often an important part of cell-type-specific oligosaccharide structures and some functional oligosaccharides. It has been shown that the structure and biosynthesis of poly-N-acetyllactosamine display a dramatic change during development and oncogenesis. Several members of beta-1, 3-N-acetylglucosaminyltransferase have been identified. |
| >cd04195 GT2_AmsE_like GT2_AmsE_like is involved in exopolysaccharide amylovora biosynthesis | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.1e-24 Score=186.75 Aligned_cols=191 Identities=18% Similarity=0.205 Sum_probs=137.4
Q ss_pred EEEEeccCCCC--ChHHHHHHHHHHHHHhhhcCCCCceEEEEEECCC-CcchHHHHHHHHHHcCCCcEEEEEcCCCCChH
Q 019818 69 SLIIPAFNEEH--RLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGS-SDGTKRVAFDFVRKYTVDNVRIILLGRNHGKG 145 (335)
Q Consensus 69 sViip~~ne~~--~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s-~d~t~~~~~~~~~~~~~~~i~vi~~~~~~Gk~ 145 (335)
||+||+||++. .|++||+|+++ |.+.+.||||||||| +|+|.++++++.++++ ++++..++|.|++
T Consensus 1 sviip~~n~~~~~~l~~~l~Sl~~--------q~~~~~eiiivdd~ss~d~t~~~~~~~~~~~~---i~~i~~~~n~G~~ 69 (201)
T cd04195 1 SVLMSVYIKEKPEFLREALESILK--------QTLPPDEVVLVKDGPVTQSLNEVLEEFKRKLP---LKVVPLEKNRGLG 69 (201)
T ss_pred CEEEEccccchHHHHHHHHHHHHh--------cCCCCcEEEEEECCCCchhHHHHHHHHHhcCC---eEEEEcCccccHH
Confidence 69999999984 89999999988 466689999999998 7889999988877664 8889988999999
Q ss_pred HHHHHHHHhcCCCEEEEEeCCCCCCcchHHHHHHHHHHhccccccCCCcccccccccccCCCeeeeecchhhhhHhhhhh
Q 019818 146 EAIRKGMLHSRGELLLMLDADGATKVTDLEKLESQIHAVGRKEYNHGDSVTVDSTFRISDIPIAAFGSRAHLEEKALATR 225 (335)
Q Consensus 146 ~aln~g~~~a~~d~v~~~DaD~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~g~~~~~~~~~~~~~ 225 (335)
.|+|.|++.++||+++++|+|+.++|++|+.+++.++++++.. ++.|.............
T Consensus 70 ~a~N~g~~~a~gd~i~~lD~Dd~~~~~~l~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~ 129 (201)
T cd04195 70 KALNEGLKHCTYDWVARMDTDDISLPDRFEKQLDFIEKNPEID--------------------IVGGGVLEFDSDGNDIG 129 (201)
T ss_pred HHHHHHHHhcCCCEEEEeCCccccCcHHHHHHHHHHHhCCCeE--------------------EEcccEEEECCCCCeec
Confidence 9999999999999999999999999999999999998765543 33332211110000000
Q ss_pred hhhHHHHHHHHHHHHHHHhCCCCccCCCceeeeeHHHHHHhhhhhhhccccchHHHHHHhHHcCCCEEEee
Q 019818 226 KWYRNFLMKGFHLVVILTAGPGIRDTQCGFKMFTRAAARKLFTNIRLKRWCFDVELVYLCKRFGIPIIEIS 296 (335)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~r~~l~~i~~~~~~~~~~~D~el~~r~~~~G~~i~~~p 296 (335)
... ............. . .....++..++||++++++.+... ..+.+|.++..|+..+|+++.++|
T Consensus 130 ~~~---~~~~~~~~~~~~~-~-~~~~~~~~~~~rr~~~~~~g~~~~-~~~~eD~~~~~r~~~~g~~~~~~~ 194 (201)
T cd04195 130 KRR---LPTSHDDILKFAR-R-RSPFNHPTVMFRKSKVLAVGGYQD-LPLVEDYALWARMLANGARFANLP 194 (201)
T ss_pred ccc---CCCCHHHHHHHhc-c-CCCCCChHHhhhHHHHHHcCCcCC-CCCchHHHHHHHHHHcCCceeccc
Confidence 000 0000000001111 1 111233456899999999844333 367789999999999999999987
|
AmsE is a glycosyltransferase involved in exopolysaccharide amylovora biosynthesis in Erwinia amylovora. Amylovara is one of the three exopolysaccharide produced by E. amylovora. Amylovara-deficient mutants are non-pathogenic. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. |
| >cd06434 GT2_HAS Hyaluronan synthases catalyze polymerization of hyaluronan | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.9e-24 Score=188.80 Aligned_cols=199 Identities=15% Similarity=0.196 Sum_probs=135.8
Q ss_pred EEEEEeccCCC-CChHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCcchHHHHHHHHHHcCCCcEEEEEcCCCCChHH
Q 019818 68 ISLIIPAFNEE-HRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNHGKGE 146 (335)
Q Consensus 68 vsViip~~ne~-~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~vi~~~~~~Gk~~ 146 (335)
||||||+|||+ +.+.+||+++.+ |. ++||+||||+|+|+|.+.+++.. +.+ .+.++. .++.||+.
T Consensus 2 isVvIp~~ne~~~~l~~~l~sl~~--------q~--~~eiivvdd~s~d~~~~~l~~~~-~~~--~~~v~~-~~~~g~~~ 67 (235)
T cd06434 2 VTVIIPVYDEDPDVFRECLRSILR--------QK--PLEIIVVTDGDDEPYLSILSQTV-KYG--GIFVIT-VPHPGKRR 67 (235)
T ss_pred eEEEEeecCCChHHHHHHHHHHHh--------CC--CCEEEEEeCCCChHHHHHHHhhc-cCC--cEEEEe-cCCCChHH
Confidence 89999999999 999999999988 34 68999999999999998875432 333 455554 56899999
Q ss_pred HHHHHHHhcCCCEEEEEeCCCCCCcchHHHHHHHHHHhccccccCCCcccccccccccCCCeeeeecchhhhhHhhhhhh
Q 019818 147 AIRKGMLHSRGELLLMLDADGATKVTDLEKLESQIHAVGRKEYNHGDSVTVDSTFRISDIPIAAFGSRAHLEEKALATRK 226 (335)
Q Consensus 147 aln~g~~~a~~d~v~~~DaD~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~g~~~~~~~~~~~~~~ 226 (335)
|+|.|++.+++|+|+++|+|+.+++++|+++++.+. +++. ++|.|..............
T Consensus 68 a~n~g~~~a~~d~v~~lD~D~~~~~~~l~~l~~~~~-~~~v--------------------~~v~~~~~~~~~~~~~~~~ 126 (235)
T cd06434 68 ALAEGIRHVTTDIVVLLDSDTVWPPNALPEMLKPFE-DPKV--------------------GGVGTNQRILRPRDSKWSF 126 (235)
T ss_pred HHHHHHHHhCCCEEEEECCCceeChhHHHHHHHhcc-CCCE--------------------eEEcCceEeecCcccHHHH
Confidence 999999999999999999999999999999999997 4443 3443332211110000000
Q ss_pred hhHHHHHHHHHHH-HHHHhCCCCccCCCceeeeeHHHHHHhhhhhh---------hccccchHHHHHHhHHcCCCEEEee
Q 019818 227 WYRNFLMKGFHLV-VILTAGPGIRDTQCGFKMFTRAAARKLFTNIR---------LKRWCFDVELVYLCKRFGIPIIEIS 296 (335)
Q Consensus 227 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~~~r~~l~~i~~~~~---------~~~~~~D~el~~r~~~~G~~i~~~p 296 (335)
............. .............|.+.++||++++++..... ....++|.+++.++.++|+++.+.|
T Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~rr~~l~~~~~~~~~~~~~~~~~~~~~~eD~~l~~~~~~~g~~~~~~~ 206 (235)
T cd06434 127 LAAEYLERRNEEIRAAMSYDGGVPCLSGRTAAYRTEILKDFLFLEEFTNETFMGRRLNAGDDRFLTRYVLSHGYKTVYQY 206 (235)
T ss_pred HHHHHHHHHHHHHHHHHhhCCCEEEccCcHHHHHHHHHhhhhhHHHhhhhhhcCCCCCcCchHHHHHHHHHCCCeEEEec
Confidence 0011111110000 01111112233445567899999998732221 1346679999999999999999997
Q ss_pred --eEEEe
Q 019818 297 --VNWSE 301 (335)
Q Consensus 297 --~~~~~ 301 (335)
..+.+
T Consensus 207 ~~~~~~~ 213 (235)
T cd06434 207 TSEAYTE 213 (235)
T ss_pred CCeEEEE
Confidence 34444
|
Hyaluronan synthases (HASs) are bi-functional glycosyltransferases that catalyze polymerization of hyaluronan. HASs transfer both GlcUA and GlcNAc in beta-(1,3) and beta-(1,4) linkages, respectively to the hyaluronan chain using UDP-GlcNAc and UDP-GlcUA as substrates. HA is made as a free glycan, not attached to a protein or lipid. HASs do not need a primer for HA synthesis; they initiate HA biosynthesis de novo with only UDP-GlcNAc, UDP-GlcUA, and Mg2+. Hyaluronan (HA) is a linear heteropolysaccharide composed of (1-3)-linked beta-D-GlcUA-beta-D-GlcNAc disaccharide repeats. It can be found in vertebrates and a few microbes and is typically on the cell surface or in the extracellular space, but is also found inside mammalian cells. Hyaluronan has several physiochemical and biological functions such as space filling, lubrication, and providing a hydrated matrix through which cells can migrate. |
| >cd04192 GT_2_like_e Subfamily of Glycosyltransferase Family GT2 of unknown function | Back alignment and domain information |
|---|
Probab=99.92 E-value=9.5e-24 Score=184.33 Aligned_cols=194 Identities=18% Similarity=0.130 Sum_probs=134.3
Q ss_pred EEEeccCCCCChHHHHHHHHHHHHHhhhcCCCCc--eEEEEEECCCCcchHHHHHHHHHHcCCCcEEEEEcC--CCCChH
Q 019818 70 LIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFT--YEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLG--RNHGKG 145 (335)
Q Consensus 70 Viip~~ne~~~l~~~l~sl~~~~~~~~~~~~~~~--~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~vi~~~--~~~Gk~ 145 (335)
||||+||+++.|++||++++. |.+++ +||+||||+|+|+|.+.++ .....+..+++++..+ .+.|++
T Consensus 1 viip~~n~~~~l~~~l~sl~~--------q~~~~~~~eiivvdd~s~d~t~~~~~-~~~~~~~~~v~~~~~~~~~~~g~~ 71 (229)
T cd04192 1 VVIAARNEAENLPRLLQSLSA--------LDYPKEKFEVILVDDHSTDGTVQILE-FAAAKPNFQLKILNNSRVSISGKK 71 (229)
T ss_pred CEEEecCcHHHHHHHHHHHHh--------CCCCCCceEEEEEcCCCCcChHHHHH-HHHhCCCcceEEeeccCcccchhH
Confidence 699999999999999999987 45555 9999999999999999887 4444443378888776 478999
Q ss_pred HHHHHHHHhcCCCEEEEEeCCCCCCcchHHHHHHHHHHhccccccCCCcccccccccccCCCeeeeecchhhhhHhhhhh
Q 019818 146 EAIRKGMLHSRGELLLMLDADGATKVTDLEKLESQIHAVGRKEYNHGDSVTVDSTFRISDIPIAAFGSRAHLEEKALATR 225 (335)
Q Consensus 146 ~aln~g~~~a~~d~v~~~DaD~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~g~~~~~~~~~~~~~ 225 (335)
.++|.|++.+++|+|+++|+|+.++|++|+++++.+.+... .++.|...........
T Consensus 72 ~a~n~g~~~~~~d~i~~~D~D~~~~~~~l~~l~~~~~~~~~---------------------~~v~~~~~~~~~~~~~-- 128 (229)
T cd04192 72 NALTTAIKAAKGDWIVTTDADCVVPSNWLLTFVAFIQKEQI---------------------GLVAGPVIYFKGKSLL-- 128 (229)
T ss_pred HHHHHHHHHhcCCEEEEECCCcccCHHHHHHHHHHhhcCCC---------------------cEEeeeeeecCCccHH--
Confidence 99999999999999999999999999999999998865432 3444433221111000
Q ss_pred hhhHHHHHHHHH--HHHHHHhCCCCccCCCceeeeeHHHHHHhhhhh-hhccccchHHHHHHhHHcCC-CEEEee
Q 019818 226 KWYRNFLMKGFH--LVVILTAGPGIRDTQCGFKMFTRAAARKLFTNI-RLKRWCFDVELVYLCKRFGI-PIIEIS 296 (335)
Q Consensus 226 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~g~~~~~r~~l~~i~~~~-~~~~~~~D~el~~r~~~~G~-~i~~~p 296 (335)
.....+...... .......+... ...+++.+++|++++++.+.. ......+|.+++.++..+|+ ++.+++
T Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~rr~~~~~~ggf~~~~~~~~eD~~~~~~~~~~g~~~~~~~~ 202 (229)
T cd04192 129 AKFQRLDWLSLLGLIAGSFGLGKPF-MCNGANMAYRKEAFFEVGGFEGNDHIASGDDELLLAKVASKYPKVAYLK 202 (229)
T ss_pred HHHHHHHHHHHHHHHhhHHHhcCcc-ccccceEEEEHHHHHHhcCCccccccccCCHHHHHHHHHhCCCCEEEee
Confidence 001111000000 00111111221 223445689999999994432 22344579999999999999 888874
|
GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families. |
| >PRK10063 putative glycosyl transferase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.7e-23 Score=184.31 Aligned_cols=193 Identities=17% Similarity=0.160 Sum_probs=132.3
Q ss_pred ceEEEEEeccCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCcchHHHHHHHHHHcCCCcEEEEEcCCCCChH
Q 019818 66 KYISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNHGKG 145 (335)
Q Consensus 66 ~~vsViip~~ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~vi~~~~~~Gk~ 145 (335)
|.||||||+||+++.|+++|+|+.++.. |++.++|||||||||+|+|.++++++.... +++++..+ +.|.+
T Consensus 1 ~~vSVIi~~yN~~~~l~~~l~sl~~~~~-----~~~~~~EiIVvDdgStD~t~~i~~~~~~~~---~i~~i~~~-~~G~~ 71 (248)
T PRK10063 1 MLLSVITVAFRNLEGIVKTHASLRHLAQ-----DPGISFEWIVVDGGSNDGTREFLENLNGIF---NLRFVSEP-DNGIY 71 (248)
T ss_pred CeEEEEEEeCCCHHHHHHHHHHHHHHHh-----CCCCCEEEEEEECcCcccHHHHHHHhcccC---CEEEEECC-CCCHH
Confidence 4699999999999999999999986543 356789999999999999999998875432 47888764 67999
Q ss_pred HHHHHHHHhcCCCEEEEEeCCCCCCcchHHHHHHHHHHhccccccCCCcccccccccccCCCeeeeecchhhhhHhhhhh
Q 019818 146 EAIRKGMLHSRGELLLMLDADGATKVTDLEKLESQIHAVGRKEYNHGDSVTVDSTFRISDIPIAAFGSRAHLEEKALATR 225 (335)
Q Consensus 146 ~aln~g~~~a~~d~v~~~DaD~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~g~~~~~~~~~~~~~ 225 (335)
.|+|.|++.|+||+|+++|+|+...|+.++. +..+...+.. ++++|......++..
T Consensus 72 ~A~N~Gi~~a~g~~v~~ld~DD~~~~~~~~~-~~~~~~~~~~--------------------~~v~g~~~~~~~~~~--- 127 (248)
T PRK10063 72 DAMNKGIAMAQGRFALFLNSGDIFHQDAANF-VRQLKMQKDN--------------------AMIIGDALLDFGDGH--- 127 (248)
T ss_pred HHHHHHHHHcCCCEEEEEeCCcccCcCHHHH-HHHHHhCCCC--------------------eEEEeeeEEEcCCCc---
Confidence 9999999999999999999999999987654 4444332222 455565532111100
Q ss_pred hhhHHHHHHHHHHHHHHHhCCCCccCCCceeeeeHHHHHHhhhhhhhccccchHHHHHHhHHcCCCEEEeeeEEE
Q 019818 226 KWYRNFLMKGFHLVVILTAGPGIRDTQCGFKMFTRAAARKLFTNIRLKRWCFDVELVYLCKRFGIPIIEISVNWS 300 (335)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~r~~l~~i~~~~~~~~~~~D~el~~r~~~~G~~i~~~p~~~~ 300 (335)
...+.... .... .... . ......+++++.++.. +......+++|.|+..|+..+|+++.++|....
T Consensus 128 ~~~~~~~~---~~~~--~~~~--~-~~~~~~~~~~~~~~~~-~fd~~~~~~~Dydl~lrl~~~g~~~~~v~~~l~ 193 (248)
T PRK10063 128 KIKRSAKP---GWYI--YHSL--P-ASHQAIFFPVSGLKKW-RYDLQYKVSSDYALAARLYKAGYAFKKLNGLVS 193 (248)
T ss_pred EEEEccCC---hhHH--hcCC--C-CCCcEEEEEHHHHhcC-CCCcccchHHhHHHHHHHHHcCCcEEEcCceeE
Confidence 00000000 0000 0011 1 1222346899988754 222234566799999999999999999984333
|
|
| >cd04196 GT_2_like_d Subfamily of Glycosyltransferase Family GT2 of unknown function | Back alignment and domain information |
|---|
Probab=99.91 E-value=7.4e-24 Score=183.06 Aligned_cols=195 Identities=17% Similarity=0.178 Sum_probs=137.6
Q ss_pred EEEEeccCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCcchHHHHHHHHHHcCCCcEEEEEcCCCCChHHHH
Q 019818 69 SLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNHGKGEAI 148 (335)
Q Consensus 69 sViip~~ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~vi~~~~~~Gk~~al 148 (335)
||+||+||+++.|+++|+|+++ |+++++|||||||||+|+|.++++++..++| ..+.++..++|.|++.++
T Consensus 1 sIvIp~yn~~~~l~~~l~sl~~--------q~~~~~eiiVvddgS~d~t~~~~~~~~~~~~-~~~~~~~~~~~~G~~~~~ 71 (214)
T cd04196 1 AVLMATYNGEKYLREQLDSILA--------QTYKNDELIISDDGSTDGTVEIIKEYIDKDP-FIIILIRNGKNLGVARNF 71 (214)
T ss_pred CEEEEecCcHHHHHHHHHHHHh--------CcCCCeEEEEEeCCCCCCcHHHHHHHHhcCC-ceEEEEeCCCCccHHHHH
Confidence 6899999999999999999988 4566899999999999999999999988876 257788888899999999
Q ss_pred HHHHHhcCCCEEEEEeCCCCCCcchHHHHHHHHHHhccccccCCCcccccccccccCCCeeeeecchhhhhH-hhhhhhh
Q 019818 149 RKGMLHSRGELLLMLDADGATKVTDLEKLESQIHAVGRKEYNHGDSVTVDSTFRISDIPIAAFGSRAHLEEK-ALATRKW 227 (335)
Q Consensus 149 n~g~~~a~~d~v~~~DaD~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~g~~~~~~~~-~~~~~~~ 227 (335)
|.|+..++||+|+++|+|+.++|++|.++++.+...+.. .++.|........ .......
T Consensus 72 n~g~~~~~g~~v~~ld~Dd~~~~~~l~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~ 131 (214)
T cd04196 72 ESLLQAADGDYVFFCDQDDIWLPDKLERLLKAFLKDDKP--------------------LLVYSDLELVDENGNPIGESF 131 (214)
T ss_pred HHHHHhCCCCEEEEECCCcccChhHHHHHHHHHhcCCCc--------------------eEEecCcEEECCCCCCccccc
Confidence 999999999999999999999999999999997665443 3333322111100 0000000
Q ss_pred hHHHHHHHHHHHHHHHhCCCCccCCCceeeeeHHHHHHhhhhhhhccccchHHHHHHhHHcCCCEEEee
Q 019818 228 YRNFLMKGFHLVVILTAGPGIRDTQCGFKMFTRAAARKLFTNIRLKRWCFDVELVYLCKRFGIPIIEIS 296 (335)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~r~~l~~i~~~~~~~~~~~D~el~~r~~~~G~~i~~~p 296 (335)
................... ...+++.+|+|++++++.+......+.+|.++..++.. |.++.++|
T Consensus 132 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~~r~~~~~~~~~~~~~~~~~~D~~~~~~~~~-~~~~~~~~ 196 (214)
T cd04196 132 FEYQKIKPGTSFNNLLFQN---VVTGCTMAFNRELLELALPFPDADVIMHDWWLALLASA-FGKVVFLD 196 (214)
T ss_pred ccccccCCccCHHHHHHhC---ccCCceeeEEHHHHHhhccccccccccchHHHHHHHHH-cCceEEcc
Confidence 0000000000011111111 12344568999999999544443256679888888877 55888887
|
GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families. |
| >cd06433 GT_2_WfgS_like WfgS and WfeV are involved in O-antigen biosynthesis | Back alignment and domain information |
|---|
Probab=99.91 E-value=7e-24 Score=181.04 Aligned_cols=188 Identities=19% Similarity=0.226 Sum_probs=135.0
Q ss_pred EEEEeccCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCcchHHHHHHHHHHcCCCcEEEEEcCCCCChHHHH
Q 019818 69 SLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNHGKGEAI 148 (335)
Q Consensus 69 sViip~~ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~vi~~~~~~Gk~~al 148 (335)
|||||+||+++.|.++|+++.+ |..+++||+||||+|+|+|.++++++..+ +.++...++.|++.|+
T Consensus 1 sivi~~~n~~~~l~~~l~sl~~--------q~~~~~evivvDd~s~d~~~~~~~~~~~~-----~~~~~~~~~~g~~~a~ 67 (202)
T cd06433 1 SIITPTYNQAETLEETIDSVLS--------QTYPNIEYIVIDGGSTDGTVDIIKKYEDK-----ITYWISEPDKGIYDAM 67 (202)
T ss_pred CEEEeccchHHHHHHHHHHHHh--------CCCCCceEEEEeCCCCccHHHHHHHhHhh-----cEEEEecCCcCHHHHH
Confidence 6899999999999999999987 46667999999999999999999887553 3344556789999999
Q ss_pred HHHHHhcCCCEEEEEeCCCCCCcchHHHHHHHHHHhccccccCCCcccccccccccCCCeeeeecchhhhhHhhhhhhhh
Q 019818 149 RKGMLHSRGELLLMLDADGATKVTDLEKLESQIHAVGRKEYNHGDSVTVDSTFRISDIPIAAFGSRAHLEEKALATRKWY 228 (335)
Q Consensus 149 n~g~~~a~~d~v~~~DaD~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~g~~~~~~~~~~~~~~~~ 228 (335)
|.|++.+++|+|+++|+|+.+.++++.+++..+...++. +++.|..............
T Consensus 68 n~~~~~a~~~~v~~ld~D~~~~~~~~~~~~~~~~~~~~~--------------------~~v~g~~~~~~~~~~~~~~-- 125 (202)
T cd06433 68 NKGIALATGDIIGFLNSDDTLLPGALLAVVAAFAEHPEV--------------------DVVYGDVLLVDENGRVIGR-- 125 (202)
T ss_pred HHHHHHcCCCEEEEeCCCcccCchHHHHHHHHHHhCCCc--------------------cEEEeeeEEEcCCCCcccC--
Confidence 999999999999999999999999999999777665443 5666654322111100000
Q ss_pred HHHHHHHHHHHHHHHhCCCCccCCCceeeeeHHHHHHhhhhhhhccccchHHHHHHhHHcCCCEEEeee
Q 019818 229 RNFLMKGFHLVVILTAGPGIRDTQCGFKMFTRAAARKLFTNIRLKRWCFDVELVYLCKRFGIPIIEISV 297 (335)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~r~~l~~i~~~~~~~~~~~D~el~~r~~~~G~~i~~~p~ 297 (335)
.. .......... ....... +..+++|++++++........+++|.|++.|+.+.|+++.++|.
T Consensus 126 ~~----~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~f~~~~~~~~D~~~~~r~~~~g~~~~~~~~ 188 (202)
T cd06433 126 RR----PPPFLDKFLL-YGMPICH-QATFFRRSLFEKYGGFDESYRIAADYDLLLRLLLAGKIFKYLPE 188 (202)
T ss_pred CC----CcchhhhHHh-hcCcccC-cceEEEHHHHHHhCCCchhhCchhhHHHHHHHHHcCCceEecch
Confidence 00 0000111111 1111222 33479999999994322223456799999999999999998883
|
Escherichia coli WfgS and Shigella dysenteriae WfeV are glycosyltransferase 2 family enzymes involved in O-antigen biosynthesis. GT-2 enzymes have GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families. |
| >cd04185 GT_2_like_b Subfamily of Glycosyltransferase Family GT2 of unknown function | Back alignment and domain information |
|---|
Probab=99.90 E-value=5e-23 Score=176.87 Aligned_cols=162 Identities=18% Similarity=0.205 Sum_probs=131.6
Q ss_pred EEEeccCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCcchHHHHHHHHHHcCCCcEEEEEcCCCCChHHHHH
Q 019818 70 LIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNHGKGEAIR 149 (335)
Q Consensus 70 Viip~~ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~vi~~~~~~Gk~~aln 149 (335)
||||+||+++.|+++|+|+.+ |++++.||||+||||+|+|.++++++....+ ++++..++|.|.+.++|
T Consensus 1 viI~~~n~~~~l~~~l~sl~~--------q~~~~~eiiivD~~s~d~t~~~~~~~~~~~~---i~~~~~~~n~g~~~~~n 69 (202)
T cd04185 1 AVVVTYNRLDLLKECLDALLA--------QTRPPDHIIVIDNASTDGTAEWLTSLGDLDN---IVYLRLPENLGGAGGFY 69 (202)
T ss_pred CEEEeeCCHHHHHHHHHHHHh--------ccCCCceEEEEECCCCcchHHHHHHhcCCCc---eEEEECccccchhhHHH
Confidence 699999999999999999988 4666789999999999999999998866543 88899999999999999
Q ss_pred HHHHhc---CCCEEEEEeCCCCCCcchHHHHHHHHHHhccccccCCCcccccccccccCCCeeeeecchhhhhHhhhhhh
Q 019818 150 KGMLHS---RGELLLMLDADGATKVTDLEKLESQIHAVGRKEYNHGDSVTVDSTFRISDIPIAAFGSRAHLEEKALATRK 226 (335)
Q Consensus 150 ~g~~~a---~~d~v~~~DaD~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~g~~~~~~~~~~~~~~ 226 (335)
.|++.+ .+|+++++|+|+.++++++.++++.++ .+.. +++.|.+.....
T Consensus 70 ~~~~~a~~~~~d~v~~ld~D~~~~~~~l~~l~~~~~-~~~~--------------------~~~~~~~~~~~~------- 121 (202)
T cd04185 70 EGVRRAYELGYDWIWLMDDDAIPDPDALEKLLAYAD-KDNP--------------------QFLAPLVLDPDG------- 121 (202)
T ss_pred HHHHHHhccCCCEEEEeCCCCCcChHHHHHHHHHHh-cCCc--------------------eEecceeEcCCC-------
Confidence 999876 689999999999999999999999997 2222 455554432110
Q ss_pred hhHHHHHHHHHHHHHHHhCCCCccCCCceeeeeHHHHHHhhhh-hhhccccchHHHHHHhHHcCCCEEEee
Q 019818 227 WYRNFLMKGFHLVVILTAGPGIRDTQCGFKMFTRAAARKLFTN-IRLKRWCFDVELVYLCKRFGIPIIEIS 296 (335)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~r~~l~~i~~~-~~~~~~~~D~el~~r~~~~G~~i~~~p 296 (335)
..++ .+++|++++++... .....+++|.+++.|+..+|+++ +.|
T Consensus 122 ------------------------~~~~-~~~~~~~~~~~g~~~~~~~~~~eD~~~~~r~~~~G~~i-~~~ 166 (202)
T cd04185 122 ------------------------SFVG-VLISRRVVEKIGLPDKEFFIWGDDTEYTLRASKAGPGI-YVP 166 (202)
T ss_pred ------------------------ceEE-EEEeHHHHHHhCCCChhhhccchHHHHHHHHHHcCCcE-Eec
Confidence 2233 48999999998332 22335668999999999999999 887
|
GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families. |
| >cd04191 Glucan_BSP_ModH Glucan_BSP_ModH catalyzes the elongation of beta-1,2 polyglucose chains of glucan | Back alignment and domain information |
|---|
Probab=99.90 E-value=4.9e-22 Score=176.37 Aligned_cols=224 Identities=14% Similarity=0.086 Sum_probs=148.1
Q ss_pred EEEEEeccCCCCC-hHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCcchHH----HHHHHHHHcC-CCcEEEEEcCCC
Q 019818 68 ISLIIPAFNEEHR-LPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKR----VAFDFVRKYT-VDNVRIILLGRN 141 (335)
Q Consensus 68 vsViip~~ne~~~-l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~----~~~~~~~~~~-~~~i~vi~~~~~ 141 (335)
|||+||+|||+.. +.++|++..+.+..+ .+++++||+++||++++.... .+.+++++++ ..++++++.++|
T Consensus 1 ~SIliP~~ne~~~~l~~~l~~~~~~~~~~---~~~~~~eI~vldD~~d~~~~~~~~~~~~~l~~~~~~~~~v~~~~r~~~ 77 (254)
T cd04191 1 TAIVMPVYNEDPARVFAGLRAMYESLAKT---GLADHFDFFILSDTRDPDIWLAEEAAWLDLCEELGAQGRIYYRRRREN 77 (254)
T ss_pred CEEEEeCCCCCHHHHHHHHHHHHHHHHhc---CCcCceEEEEECCCCChHHHHHHHHHHHHHHHHhCCCCcEEEEEcCCC
Confidence 6999999999987 788888887766541 234789999999987665432 2233555554 237899999988
Q ss_pred CC-hHHHHHHHHHh--cCCCEEEEEeCCCCCCcchHHHHHHHHHHhccccccCCCcccccccccccCCCeeeeecchhhh
Q 019818 142 HG-KGEAIRKGMLH--SRGELLLMLDADGATKVTDLEKLESQIHAVGRKEYNHGDSVTVDSTFRISDIPIAAFGSRAHLE 218 (335)
Q Consensus 142 ~G-k~~aln~g~~~--a~~d~v~~~DaD~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~g~~~~~~ 218 (335)
.| |++++|.++.. +++|+|+++|||..++|++|.+++..|.++++. .+|++.....+
T Consensus 78 ~g~Kag~l~~~~~~~~~~~~~i~~~DaD~~~~p~~l~~~v~~~~~~~~v--------------------g~vq~~~~~~n 137 (254)
T cd04191 78 TGRKAGNIADFCRRWGSRYDYMVVLDADSLMSGDTIVRLVRRMEANPRA--------------------GIIQTAPKLIG 137 (254)
T ss_pred CCccHHHHHHHHHHhCCCCCEEEEEeCCCCCCHHHHHHHHHHHHhCCCE--------------------EEEeCCceeEC
Confidence 88 78899999987 688999999999999999999999999876554 45554332222
Q ss_pred hHhhhhhhhhHHHHHHH---HHHHH---HHHhCCCCccCCCceeeeeHHHHHHhh--------hhhhhccccchHHHHHH
Q 019818 219 EKALATRKWYRNFLMKG---FHLVV---ILTAGPGIRDTQCGFKMFTRAAARKLF--------TNIRLKRWCFDVELVYL 284 (335)
Q Consensus 219 ~~~~~~~~~~~~~~~~~---~~~~~---~~~~~~~~~~~~~g~~~~~r~~l~~i~--------~~~~~~~~~~D~el~~r 284 (335)
. .+++.+..... +.... ............|...++||++|+++. +.+......+|.++.++
T Consensus 138 ~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~Rr~al~~~~~~~~i~g~g~~~~~~l~eD~~l~~~ 212 (254)
T cd04191 138 A-----ETLFARLQQFANRLYGPVFGRGLAAWQGGEGNYWGHNAIIRVAAFMEHCALPVLPGRPPFGGHILSHDFVEAAL 212 (254)
T ss_pred C-----CCHHHHHHHHHHHHHHHHHHHHHHHhcCCccCccceEEEEEHHHHHHhcCCccccCCCCCCCCeecHHHHHHHH
Confidence 1 12222222211 11111 111111122233456799999998851 12223457789999999
Q ss_pred hHHcCCCEEEeeeE---EEecCCC-cccccchHHHHHHH
Q 019818 285 CKRFGIPIIEISVN---WSEIPGS-KVNPLSIPNMLWEL 319 (335)
Q Consensus 285 ~~~~G~~i~~~p~~---~~~~~~s-~~~~~~~~~~~~~~ 319 (335)
+..+|+++++.|.. +.+.+.+ +.-+++..||..+.
T Consensus 213 ~~~~G~ri~~~~~~~~~~~~~p~~~~~~~~qr~RW~~G~ 251 (254)
T cd04191 213 MRRAGWEVRLAPDLEGSYEECPPTLIDFLKRDRRWCQGN 251 (254)
T ss_pred HHHcCCEEEEccCCcceEeECCCCHHHHHHHHHHHHhhc
Confidence 99999999999942 3443444 33345555665544
|
Periplasmic Glucan Biosynthesis protein ModH is a glucosyltransferase that catalyzes the elongation of beta-1,2 polyglucose chains of glucan, requiring a beta-glucoside as a primer and UDP-glucose as a substrate. Glucans are composed of 5 to 10 units of glucose forming a highly branched structure, where beta-1,2-linked glucose constitutes a linear backbone to which branches are attached by beta-1,6 linkages. In Escherichia coli, glucans are located in the periplasmic space, functioning as regulator of osmolarity. It is synthesized at a maximum when cells are grown in a medium with low osmolarity. It has been shown to span the cytoplasmic membrane. |
| >PRK05454 glucosyltransferase MdoH; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.1e-21 Score=192.64 Aligned_cols=231 Identities=13% Similarity=0.072 Sum_probs=154.8
Q ss_pred CCCCceEEEEEeccCCCC-----ChHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCcchHHH----HHHHHHHcC-CC
Q 019818 62 DPAEKYISLIIPAFNEEH-----RLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRV----AFDFVRKYT-VD 131 (335)
Q Consensus 62 ~~~~~~vsViip~~ne~~-----~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~----~~~~~~~~~-~~ 131 (335)
.+..++|+|+||+|||+. .++.+++|+.++ ....++|++++||+++|++... .++++++++ ..
T Consensus 120 ~~~~~~VaVliP~yNEd~~~v~~~L~a~~~Sl~~~-------~~~~~~e~~vLdD~~d~~~~~~e~~~~~~L~~~~~~~~ 192 (691)
T PRK05454 120 PPPEARTAILMPIYNEDPARVFAGLRAMYESLAAT-------GHGAHFDFFILSDTRDPDIAAAEEAAWLELRAELGGEG 192 (691)
T ss_pred CCCCCceEEEEeCCCCChHHHHHHHHHHHHHHHhc-------CCCCCEEEEEEECCCChhHHHHHHHHHHHHHHhcCCCC
Confidence 345678999999999985 355555555542 2345799999999999987643 345666664 23
Q ss_pred cEEEEEcCCCCC-hHHHHHHHHHh--cCCCEEEEEeCCCCCCcchHHHHHHHHHHhccccccCCCcccccccccccCCCe
Q 019818 132 NVRIILLGRNHG-KGEAIRKGMLH--SRGELLLMLDADGATKVTDLEKLESQIHAVGRKEYNHGDSVTVDSTFRISDIPI 208 (335)
Q Consensus 132 ~i~vi~~~~~~G-k~~aln~g~~~--a~~d~v~~~DaD~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (335)
++.+.++..|.| |++++|.+++. +++||++++|||+.+++|++.+++..|+++++. .
T Consensus 193 ~i~yr~R~~n~~~KaGNl~~~~~~~~~~~eyivvLDADs~m~~d~L~~lv~~m~~dP~v--------------------G 252 (691)
T PRK05454 193 RIFYRRRRRNVGRKAGNIADFCRRWGGAYDYMVVLDADSLMSGDTLVRLVRLMEANPRA--------------------G 252 (691)
T ss_pred cEEEEECCcCCCccHHHHHHHHHhcCCCcCEEEEEcCCCCCCHHHHHHHHHHHhhCcCE--------------------E
Confidence 788888887877 88999999998 566999999999999999999999999876654 4
Q ss_pred eeeecchhhhhHhhhhhhhhHHH---HHHHHHHHHHHHh---CCCCccCCCceeeeeHHHHHHhhh--------hhhhcc
Q 019818 209 AAFGSRAHLEEKALATRKWYRNF---LMKGFHLVVILTA---GPGIRDTQCGFKMFTRAAARKLFT--------NIRLKR 274 (335)
Q Consensus 209 ~v~g~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~---~~~~~~~~~g~~~~~r~~l~~i~~--------~~~~~~ 274 (335)
+|++.....+. .+++.+. .+..+........ ...-....|...++|++++.++.+ .+....
T Consensus 253 lVQt~~~~~n~-----~slfaR~qqf~~~~y~~~~~~G~~~w~~~~g~f~G~naIiR~~af~~~~glp~L~g~~p~~~~~ 327 (691)
T PRK05454 253 LIQTLPVAVGA-----DTLFARLQQFATRVYGPLFAAGLAWWQGGEGNYWGHNAIIRVKAFAEHCGLPPLPGRGPFGGHI 327 (691)
T ss_pred EEeCCccCcCC-----CCHHHHHHHHHHHHHHHHHHhhhhhhccCccccccceEEEEHHHHHHhcCCccccccCCCCCCc
Confidence 55543322221 1222222 2222222211100 001112334457899999988721 122345
Q ss_pred ccchHHHHHHhHHcCCCEEEeee---EEEecCCC-cccccchHHHHHHHHHHHh
Q 019818 275 WCFDVELVYLCKRFGIPIIEISV---NWSEIPGS-KVNPLSIPNMLWELALMSV 324 (335)
Q Consensus 275 ~~~D~el~~r~~~~G~~i~~~p~---~~~~~~~s-~~~~~~~~~~~~~~~~i~~ 324 (335)
.++|.+...+++++||++.++|- .|.+.+.+ +.-.+|..|+..++++...
T Consensus 328 LseD~~~a~~l~~~GyrV~~~pd~~~~~ee~P~tl~~~~~qr~RW~~G~lQ~l~ 381 (691)
T PRK05454 328 LSHDFVEAALMRRAGWGVWLAPDLPGSYEELPPNLLDELKRDRRWCQGNLQHLR 381 (691)
T ss_pred ccHHHHHHHHHHHCCCEEEEcCccccccccCCCCHHHHHHHHHHHHhchHHHHH
Confidence 67899999999999999999984 45555555 3344666777777776554
|
|
| >PRK11234 nfrB bacteriophage N4 adsorption protein B; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.9e-21 Score=193.88 Aligned_cols=203 Identities=13% Similarity=0.100 Sum_probs=141.2
Q ss_pred CCCCCceEEEEEeccCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCcchHHHHHHHHHHcCCCcEEEEEcCC
Q 019818 61 TDPAEKYISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGR 140 (335)
Q Consensus 61 ~~~~~~~vsViip~~ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~vi~~~~ 140 (335)
.....|.|||+||+|||+.++++++++++.. ++|+++||++++|+++|.|.+.++++++++| +++++..+.
T Consensus 58 ~~~~~~~vsIlVPa~nE~~vi~~~i~~ll~~-------ldYP~~eI~vi~~~nD~~T~~~~~~l~~~~p--~~~~v~~~~ 128 (727)
T PRK11234 58 YKPDEKPLAIMVPAWNETGVIGNMAELAATT-------LDYENYHIFVGTYPNDPATQADVDAVCARFP--NVHKVVCAR 128 (727)
T ss_pred ccCCCCCEEEEEecCcchhhHHHHHHHHHHh-------CCCCCeEEEEEecCCChhHHHHHHHHHHHCC--CcEEEEeCC
Confidence 3345578999999999999999999998752 5777899999999999999999999999998 566554443
Q ss_pred --CCChHHHHHHHHHhc---------CCCEEEEEeCCCCCCcchHHHHHHHHHHhccccccCCCcccccccccccCCCee
Q 019818 141 --NHGKGEAIRKGMLHS---------RGELLLMLDADGATKVTDLEKLESQIHAVGRKEYNHGDSVTVDSTFRISDIPIA 209 (335)
Q Consensus 141 --~~Gk~~aln~g~~~a---------~~d~v~~~DaD~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (335)
|.||+.|+|.|+..+ +.+.+++.|||+.++|+.|. +++.+.+.. ++
T Consensus 129 ~g~~gKa~aLN~~l~~~~~~e~~~~~~~~vvvi~DAD~~v~pd~L~-~~~~l~~~~----------------------~~ 185 (727)
T PRK11234 129 PGPTSKADCLNNVLDAITQFERSANFAFAGFILHDAEDVISPMELR-LFNYLVERK----------------------DL 185 (727)
T ss_pred CCCCCHHHHHHHHHHHHHhhhcccCCcccEEEEEcCCCCCChhHHH-HHHhhcCCC----------------------Ce
Confidence 789999999999987 23678889999999999997 566664321 34
Q ss_pred eeecchhhhh--HhhhhhhhhHHHHHHHHH-HHHHHHhCCCCccCCCceeee-eH--HHHHHhhh--hhhhccccchHHH
Q 019818 210 AFGSRAHLEE--KALATRKWYRNFLMKGFH-LVVILTAGPGIRDTQCGFKMF-TR--AAARKLFT--NIRLKRWCFDVEL 281 (335)
Q Consensus 210 v~g~~~~~~~--~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~-~r--~~l~~i~~--~~~~~~~~~D~el 281 (335)
|++....... .......+.-.+..+... ...+...+..+. ..|...+| || +++.++++ .+..+..+||+++
T Consensus 186 VQ~p~~p~~~~~~~~~~~~~~~EFa~~~~~~~~~~~~lgg~~~-l~G~~~af~Rr~l~al~~~ggg~~~~~~~lTED~dl 264 (727)
T PRK11234 186 IQIPVYPFEREWTHFTSGTYIDEFAELHGKDVPVREALAGQVP-SAGVGTCFSRRAVTALLEDGDGIAFDVQSLTEDYDI 264 (727)
T ss_pred EeecccCCCccHHHHHHHHHHHHHHHHhhhhhHHHHHcCCCcc-cCCceEEEecccHHHHHHhcCCCCcCCCcchHHHHH
Confidence 5553321111 111111111222221111 122333333332 33334578 56 45667642 4677888999999
Q ss_pred HHHhHHcCCCEEEee
Q 019818 282 VYLCKRFGIPIIEIS 296 (335)
Q Consensus 282 ~~r~~~~G~~i~~~p 296 (335)
+.++..+|+++.+.|
T Consensus 265 g~rL~~~G~~v~f~~ 279 (727)
T PRK11234 265 GFRLKEKGMREIFVR 279 (727)
T ss_pred HHHHHHCCCEEEEcc
Confidence 999999999999998
|
|
| >PRK10018 putative glycosyl transferase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=4.9e-22 Score=178.62 Aligned_cols=111 Identities=18% Similarity=0.267 Sum_probs=98.4
Q ss_pred CceEEEEEeccCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCcchHHHHHHHHHHcCCCcEEEEEcCCCCCh
Q 019818 65 EKYISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNHGK 144 (335)
Q Consensus 65 ~~~vsViip~~ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~vi~~~~~~Gk 144 (335)
.|.||||||+||+++.+.++|+|+++ |.+.++|||||||||+| .+.++++.+.+...+++++..+.|.|.
T Consensus 4 ~p~VSVIip~yN~~~~l~~~l~Svl~--------Qt~~~~EiIVVDDgS~~--~~~~~~~~~~~~~~ri~~i~~~~n~G~ 73 (279)
T PRK10018 4 NPLISIYMPTWNRQQLAIRAIKSVLR--------QDYSNWEMIIVDDCSTS--WEQLQQYVTALNDPRITYIHNDINSGA 73 (279)
T ss_pred CCEEEEEEEeCCCHHHHHHHHHHHHh--------CCCCCeEEEEEECCCCC--HHHHHHHHHHcCCCCEEEEECCCCCCH
Confidence 47899999999999999999999998 57778999999999984 556677766544448999999999999
Q ss_pred HHHHHHHHHhcCCCEEEEEeCCCCCCcchHHHHHHHHHHhc
Q 019818 145 GEAIRKGMLHSRGELLLMLDADGATKVTDLEKLESQIHAVG 185 (335)
Q Consensus 145 ~~aln~g~~~a~~d~v~~~DaD~~~~~~~l~~l~~~~~~~~ 185 (335)
+.|+|.|++.|+||||+++|+|+.+.|+.|..+++.+.+..
T Consensus 74 ~~a~N~gi~~a~g~~I~~lDaDD~~~p~~l~~~~~~~~~~~ 114 (279)
T PRK10018 74 CAVRNQAIMLAQGEYITGIDDDDEWTPNRLSVFLAHKQQLV 114 (279)
T ss_pred HHHHHHHHHHcCCCEEEEECCCCCCCccHHHHHHHHHHhCC
Confidence 99999999999999999999999999999999999887643
|
|
| >cd06438 EpsO_like EpsO protein participates in the methanolan synthesis | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.2e-22 Score=172.06 Aligned_cols=172 Identities=20% Similarity=0.192 Sum_probs=117.8
Q ss_pred EEEeccCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCcchHHHHHHHHHHcCCCcEEEEEcCCCCChHHHHH
Q 019818 70 LIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNHGKGEAIR 149 (335)
Q Consensus 70 Viip~~ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~vi~~~~~~Gk~~aln 149 (335)
||||+|||++.|.++|+++.++.+ +...+||+||||+|+|+|.++++++.. .+.+...+.+.||+.|+|
T Consensus 1 VvIp~~ne~~~i~~~l~sl~~~~~------p~~~~eiivvdd~s~D~t~~~~~~~~~-----~~~~~~~~~~~gk~~aln 69 (183)
T cd06438 1 ILIPAHNEEAVIGNTVRSLKAQDY------PRELYRIFVVADNCTDDTAQVARAAGA-----TVLERHDPERRGKGYALD 69 (183)
T ss_pred CEEeccchHHHHHHHHHHHHhcCC------CCcccEEEEEeCCCCchHHHHHHHcCC-----eEEEeCCCCCCCHHHHHH
Confidence 699999999999999999987422 235799999999999999998876522 333344456889999999
Q ss_pred HHHHhcC-----CCEEEEEeCCCCCCcchHHHHHHHHHHhccccccCCCcccccccccccCCCeeeeecchhhhhHhhhh
Q 019818 150 KGMLHSR-----GELLLMLDADGATKVTDLEKLESQIHAVGRKEYNHGDSVTVDSTFRISDIPIAAFGSRAHLEEKALAT 224 (335)
Q Consensus 150 ~g~~~a~-----~d~v~~~DaD~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~g~~~~~~~~~~~~ 224 (335)
.|++.+. +|+++++|+|+.++|+++.+++..+.++. ++|.|.+.....+
T Consensus 70 ~g~~~a~~~~~~~d~v~~~DaD~~~~p~~l~~l~~~~~~~~----------------------~~v~g~~~~~~~~---- 123 (183)
T cd06438 70 FGFRHLLNLADDPDAVVVFDADNLVDPNALEELNARFAAGA----------------------RVVQAYYNSKNPD---- 123 (183)
T ss_pred HHHHHHHhcCCCCCEEEEEcCCCCCChhHHHHHHHHHhhCC----------------------CeeEEEEeeeCCc----
Confidence 9999874 89999999999999999999999997543 5666655422111
Q ss_pred hhhhHHHH---HHHHHHHH---HHHhCCCCccCCCceeeeeHHHHHHhhhhhhhccccchHHH
Q 019818 225 RKWYRNFL---MKGFHLVV---ILTAGPGIRDTQCGFKMFTRAAARKLFTNIRLKRWCFDVEL 281 (335)
Q Consensus 225 ~~~~~~~~---~~~~~~~~---~~~~~~~~~~~~~g~~~~~r~~l~~i~~~~~~~~~~~D~el 281 (335)
.++..... ....+.+. ....+...... |++.+|||+++++. ++......+|.||
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-G~~~~~rr~~l~~~--g~~~~~l~ED~~~ 183 (183)
T cd06438 124 DSWITRLYAFAFLVFNRLRPLGRSNLGLSCQLG-GTGMCFPWAVLRQA--PWAAHSLTEDLEF 183 (183)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHcCCCeeec-CchhhhHHHHHHhC--CCCCCCcccccCC
Confidence 11221111 11112211 11223222333 33458999999993 4445566778764
|
The Methylobacillus sp EpsO protein is predicted to participate in the methanolan synthesis. Methanolan is an exopolysaccharide (EPS), composed of glucose, mannose and galactose. A 21 genes cluster was predicted to participate in the methanolan synthesis. Gene disruption analysis revealed that EpsO is one of the glycosyltransferase enzymes involved in the synthesis of repeating sugar units onto the lipid carrier. |
| >cd06420 GT2_Chondriotin_Pol_N N-terminal domain of Chondroitin polymerase functions as a GalNAc transferase | Back alignment and domain information |
|---|
Probab=99.88 E-value=6.5e-22 Score=166.86 Aligned_cols=170 Identities=23% Similarity=0.282 Sum_probs=127.0
Q ss_pred EEEeccCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCcchHHHHHHHHHHcCCCcEEEEEcCCCCChHHHHH
Q 019818 70 LIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNHGKGEAIR 149 (335)
Q Consensus 70 Viip~~ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~vi~~~~~~Gk~~aln 149 (335)
||||+||+++.++++|+++.+ |++.++||+|+||+|+|+|.++++++.+..+...+.+...+.+.|++.++|
T Consensus 1 ivip~~n~~~~l~~~l~sl~~--------q~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n 72 (182)
T cd06420 1 LIITTYNRPEALELVLKSVLN--------QSILPFEVIIADDGSTEETKELIEEFKSQFPIPIKHVWQEDEGFRKAKIRN 72 (182)
T ss_pred CEEeecCChHHHHHHHHHHHh--------ccCCCCEEEEEeCCCchhHHHHHHHHHhhcCCceEEEEcCCcchhHHHHHH
Confidence 689999999999999999988 456689999999999999999999887754432344455445567999999
Q ss_pred HHHHhcCCCEEEEEeCCCCCCcchHHHHHHHHHHhccccccCCCcccccccccccCCCeeeeecchhhhhHhhhhhhhhH
Q 019818 150 KGMLHSRGELLLMLDADGATKVTDLEKLESQIHAVGRKEYNHGDSVTVDSTFRISDIPIAAFGSRAHLEEKALATRKWYR 229 (335)
Q Consensus 150 ~g~~~a~~d~v~~~DaD~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~g~~~~~~~~~~~~~~~~~ 229 (335)
.|++.++||+++++|+|+.+++++|.++++.+.. + ..+.|.+.........
T Consensus 73 ~g~~~a~g~~i~~lD~D~~~~~~~l~~~~~~~~~----~-------------------~~v~g~~~~~~~~~~~------ 123 (182)
T cd06420 73 KAIAAAKGDYLIFIDGDCIPHPDFIADHIELAEP----G-------------------VFLSGSRVLLNEKLTE------ 123 (182)
T ss_pred HHHHHhcCCEEEEEcCCcccCHHHHHHHHHHhCC----C-------------------cEEecceeecccccce------
Confidence 9999999999999999999999999999988721 1 3555655432211000
Q ss_pred HHHHHHHHHHHHHHhCCCCccCCCceeeeeHHHHHHhhhhhhh-ccc-cchHHHHHHhHHcCCCEEEe
Q 019818 230 NFLMKGFHLVVILTAGPGIRDTQCGFKMFTRAAARKLFTNIRL-KRW-CFDVELVYLCKRFGIPIIEI 295 (335)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~r~~l~~i~~~~~~-~~~-~~D~el~~r~~~~G~~i~~~ 295 (335)
....+++.+++|+.+.++.+.... ..+ .+|.|++.|+.++|++...+
T Consensus 124 -------------------~~~~~~~~~~~r~~~~~~ggf~~~~~~~~~eD~~l~~r~~~~g~~~~~~ 172 (182)
T cd06420 124 -------------------RGIRGCNMSFWKKDLLAVNGFDEEFTGWGGEDSELVARLLNSGIKFRKL 172 (182)
T ss_pred -------------------eEeccceEEEEHHHHHHhCCCCcccccCCcchHHHHHHHHHcCCcEEEe
Confidence 123344457788888877333221 222 47999999999999777666
|
Chondroitin polymerase is a two domain, bi-functional protein. The N-terminal domain functions as a GalNAc transferase. The bacterial chondroitin polymerase catalyzes elongation of the chondroitin chain by alternatively transferring the GlcUA and GalNAc moiety from UDP-GlcUA and UDP-GalNAc to the non-reducing ends of the chondroitin chain. The enzyme consists of N-terminal and C-terminal domains in which the two active sites catalyze the addition of GalNAc and GlcUA, respectively. Chondroitin chains range from 40 to over 100 repeating units of the disaccharide. Sulfated chondroitins are involved in the regulation of various biological functions such as central nervous system development, wound repair, infection, growth factor signaling, and morphogenesis, in addition to its conventional structural roles. In Caenorhabditis elegans, chondroitin is an essential factor for the worm |
| >PF00535 Glycos_transf_2: Glycosyl transferase family 2; InterPro: IPR001173 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases | Back alignment and domain information |
|---|
Probab=99.88 E-value=8.8e-23 Score=168.61 Aligned_cols=167 Identities=23% Similarity=0.322 Sum_probs=122.1
Q ss_pred EEEEeccCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCcchHHHHHHHHHHcCCCcEEEEEcCCCCChHHHH
Q 019818 69 SLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNHGKGEAI 148 (335)
Q Consensus 69 sViip~~ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~vi~~~~~~Gk~~al 148 (335)
|||||+||+++.|.++|+|++++ +..++||+||||||+|+|.++++++.+..+ +++++..++|.|++.++
T Consensus 1 Svvip~~n~~~~l~~~l~sl~~q--------~~~~~eiivvdd~s~d~~~~~~~~~~~~~~--~i~~i~~~~n~g~~~~~ 70 (169)
T PF00535_consen 1 SVVIPTYNEAEYLERTLESLLKQ--------TDPDFEIIVVDDGSTDETEEILEEYAESDP--NIRYIRNPENLGFSAAR 70 (169)
T ss_dssp EEEEEESS-TTTHHHHHHHHHHH--------SGCEEEEEEEECS-SSSHHHHHHHHHCCST--TEEEEEHCCCSHHHHHH
T ss_pred CEEEEeeCCHHHHHHHHHHHhhc--------cCCCEEEEEecccccccccccccccccccc--ccccccccccccccccc
Confidence 79999999999999999999994 566899999999999999999999977333 89999999999999999
Q ss_pred HHHHHhcCCCEEEEEeCCCCCCcchHHHHHHHHHHhccccccCCCcccccccccccCCCeeeeecchhhhhHhhhhhhhh
Q 019818 149 RKGMLHSRGELLLMLDADGATKVTDLEKLESQIHAVGRKEYNHGDSVTVDSTFRISDIPIAAFGSRAHLEEKALATRKWY 228 (335)
Q Consensus 149 n~g~~~a~~d~v~~~DaD~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~g~~~~~~~~~~~~~~~~ 228 (335)
|.|++.++++|++++|+|+.+++++|..+++.+.+.+. +++.|................
T Consensus 71 n~~~~~a~~~~i~~ld~D~~~~~~~l~~l~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~ 129 (169)
T PF00535_consen 71 NRGIKHAKGEYILFLDDDDIISPDWLEELVEALEKNPP---------------------DVVIGSVIYIDDDNRYPDRRL 129 (169)
T ss_dssp HHHHHH--SSEEEEEETTEEE-TTHHHHHHHHHHHCTT---------------------EEEEEEEEEEECTTETEECCC
T ss_pred cccccccceeEEEEeCCCceEcHHHHHHHHHHHHhCCC---------------------cEEEEEEEEecCCcccccccc
Confidence 99999999999999999999999999999999988543 455555543221111111100
Q ss_pred H-HHHHHHHHHHHHHHhCCCCccCCCceeeeeHHHHHHh
Q 019818 229 R-NFLMKGFHLVVILTAGPGIRDTQCGFKMFTRAAARKL 266 (335)
Q Consensus 229 ~-~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~r~~l~~i 266 (335)
. .......................+++.+++|++++++
T Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rr~~~~~~ 168 (169)
T PF00535_consen 130 RFSFWNRFERKIFNNIRFWKISFFIGSCALFRRSVFEEI 168 (169)
T ss_dssp TSEEEECCHCHHHHTTHSTTSSEESSSCEEEEEHHHHHC
T ss_pred chhhhhhhhhHHHHhhhcCCcccccccEEEEEHHHHHhh
Confidence 0 0111112222333334555566677789999999987
|
These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. This domain is found in a diverse family of glycosyl transferases that transfer the sugar from UDP-glucose, UDP-N-acetyl-galactosamine, GDP-mannose or CDP-abequose, to a range of substrates including cellulose, dolichol phosphate and teichoic acids.; PDB: 2Z87_A 2Z86_B 2D7R_A 2D7I_A 3CKN_A 3CKQ_A 3CKJ_A 3CKV_A 3CKO_A 2FFU_A .... |
| >cd04186 GT_2_like_c Subfamily of Glycosyltransferase Family GT2 of unknown function | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.3e-21 Score=161.84 Aligned_cols=157 Identities=22% Similarity=0.333 Sum_probs=131.6
Q ss_pred EEEeccCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCcchHHHHHHHHHHcCCCcEEEEEcCCCCChHHHHH
Q 019818 70 LIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNHGKGEAIR 149 (335)
Q Consensus 70 Viip~~ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~vi~~~~~~Gk~~aln 149 (335)
|+||+||+.+.+.++++++.+ |.+.++||+|+||||+|++.+.+++... +++++..+++.|++.|+|
T Consensus 1 vii~~~~~~~~l~~~l~sl~~--------~~~~~~~iiivdd~s~~~~~~~~~~~~~-----~~~~~~~~~~~g~~~a~n 67 (166)
T cd04186 1 IIIVNYNSLEYLKACLDSLLA--------QTYPDFEVIVVDNASTDGSVELLRELFP-----EVRLIRNGENLGFGAGNN 67 (166)
T ss_pred CEEEecCCHHHHHHHHHHHHh--------ccCCCeEEEEEECCCCchHHHHHHHhCC-----CeEEEecCCCcChHHHhh
Confidence 689999999999999999987 3557899999999999999988876532 588888889999999999
Q ss_pred HHHHhcCCCEEEEEeCCCCCCcchHHHHHHHHHHhccccccCCCcccccccccccCCCeeeeecchhhhhHhhhhhhhhH
Q 019818 150 KGMLHSRGELLLMLDADGATKVTDLEKLESQIHAVGRKEYNHGDSVTVDSTFRISDIPIAAFGSRAHLEEKALATRKWYR 229 (335)
Q Consensus 150 ~g~~~a~~d~v~~~DaD~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~g~~~~~~~~~~~~~~~~~ 229 (335)
.|++.+++++++++|+|+.++++++..+++.+.+.++. .++ +.+
T Consensus 68 ~~~~~~~~~~i~~~D~D~~~~~~~l~~~~~~~~~~~~~--------------------~~~-~~~--------------- 111 (166)
T cd04186 68 QGIREAKGDYVLLLNPDTVVEPGALLELLDAAEQDPDV--------------------GIV-GPK--------------- 111 (166)
T ss_pred HHHhhCCCCEEEEECCCcEECccHHHHHHHHHHhCCCc--------------------eEE-Ecc---------------
Confidence 99999999999999999999999999999988776432 233 332
Q ss_pred HHHHHHHHHHHHHHhCCCCccCCCceeeeeHHHHHHhhhh-hhhccccchHHHHHHhHHcCCCEEEee
Q 019818 230 NFLMKGFHLVVILTAGPGIRDTQCGFKMFTRAAARKLFTN-IRLKRWCFDVELVYLCKRFGIPIIEIS 296 (335)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~r~~l~~i~~~-~~~~~~~~D~el~~r~~~~G~~i~~~p 296 (335)
..+++.++++++++++.+. .....+.+|.++..|+.++|+++.+.|
T Consensus 112 ---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~eD~~~~~~~~~~g~~i~~~~ 158 (166)
T cd04186 112 ---------------------VSGAFLLVRREVFEEVGGFDEDFFLYYEDVDLCLRARLAGYRVLYVP 158 (166)
T ss_pred ---------------------CceeeEeeeHHHHHHcCCCChhhhccccHHHHHHHHHHcCCeEEEcc
Confidence 4566779999999998322 222235679999999999999999998
|
GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families. |
| >cd02522 GT_2_like_a GT_2_like_a represents a glycosyltransferase family-2 subfamily with unknown function | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.6e-21 Score=169.66 Aligned_cols=178 Identities=25% Similarity=0.265 Sum_probs=124.2
Q ss_pred EEEEEeccCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCcchHHHHHHHHHHcCCCcEEEEEcCCCCChHHH
Q 019818 68 ISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNHGKGEA 147 (335)
Q Consensus 68 vsViip~~ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~vi~~~~~~Gk~~a 147 (335)
||||||+||+++.|.++|+++.+ |.+.++||+||||+|+|+|.+++++ + ++.++. .+.|++.+
T Consensus 1 vsvii~~~n~~~~l~~~l~sl~~--------q~~~~~evivvdd~s~d~~~~~~~~-----~--~~~~~~--~~~g~~~a 63 (221)
T cd02522 1 LSIIIPTLNEAENLPRLLASLRR--------LNPLPLEIIVVDGGSTDGTVAIARS-----A--GVVVIS--SPKGRARQ 63 (221)
T ss_pred CEEEEEccCcHHHHHHHHHHHHh--------ccCCCcEEEEEeCCCCccHHHHHhc-----C--CeEEEe--CCcCHHHH
Confidence 58999999999999999999987 4557899999999999999988876 2 566655 45799999
Q ss_pred HHHHHHhcCCCEEEEEeCCCCCCcchHHHHHHHHHHhccccccCCCcccccccccccCCCeeeeecchhhhhHhhhhhhh
Q 019818 148 IRKGMLHSRGELLLMLDADGATKVTDLEKLESQIHAVGRKEYNHGDSVTVDSTFRISDIPIAAFGSRAHLEEKALATRKW 227 (335)
Q Consensus 148 ln~g~~~a~~d~v~~~DaD~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~g~~~~~~~~~~~~~~~ 227 (335)
+|.|+..+++++++++|+|+.++++++++++..+..... .++.+........ ..
T Consensus 64 ~n~g~~~a~~~~i~~~D~D~~~~~~~l~~l~~~~~~~~~---------------------~~~~~~~~~~~~~-----~~ 117 (221)
T cd02522 64 MNAGAAAARGDWLLFLHADTRLPPDWDAAIIETLRADGA---------------------VAGAFRLRFDDPG-----PR 117 (221)
T ss_pred HHHHHHhccCCEEEEEcCCCCCChhHHHHHHHHhhcCCc---------------------EEEEEEeeecCCc-----cc
Confidence 999999999999999999999999999999776644321 1111111111110 11
Q ss_pred hHHHHHHHHHHHHHHHhCCCCccCCCceeeeeHHHHHHhhhhhhhccccchHHHHHHhHHcCCCEEE
Q 019818 228 YRNFLMKGFHLVVILTAGPGIRDTQCGFKMFTRAAARKLFTNIRLKRWCFDVELVYLCKRFGIPIIE 294 (335)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~r~~l~~i~~~~~~~~~~~D~el~~r~~~~G~~i~~ 294 (335)
.+... ...... ....... ..+.+.+++|++++++++..... +.+|.||+.|+.+.|+++..
T Consensus 118 ~~~~~---~~~~~~-~~~~~~~-~~~~~~~~r~~~~~~~G~fd~~~-~~ED~d~~~r~~~~G~~~~~ 178 (221)
T cd02522 118 LRLLE---LGANLR-SRLFGLP-YGDQGLFIRRELFEELGGFPELP-LMEDVELVRRLRRRGRPALL 178 (221)
T ss_pred hhhhh---hcccce-ecccCCC-cCCceEEEEHHHHHHhCCCCccc-cccHHHHHHHHHhCCCEEEc
Confidence 11000 000000 0011111 12234689999999995443333 77899999999999988865
|
Glycosyltransferase family 2 (GT-2) subfamily of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families. |
| >cd04190 Chitin_synth_C C-terminal domain of Chitin Synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.4e-22 Score=179.67 Aligned_cols=201 Identities=16% Similarity=0.102 Sum_probs=132.2
Q ss_pred EEEeccCCC-CChHHHHHHHHHHHHHhh--hcCCCCceEEEEEECCCCcchHHHHHHHHHHcCCCcEEEEEcCCCCChHH
Q 019818 70 LIIPAFNEE-HRLPGALDETLNYLQQRA--AKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNHGKGE 146 (335)
Q Consensus 70 Viip~~ne~-~~l~~~l~sl~~~~~~~~--~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~vi~~~~~~Gk~~ 146 (335)
||||+|||+ ..|+++|+|++++.++++ .+....++||+||+|||+| .|.||..
T Consensus 1 v~ip~yNE~~~~i~~~l~sv~~q~y~~~~~~~~~~~~~evivv~Dgs~d------------------------~~~gk~~ 56 (244)
T cd04190 1 VCVTMYNEDEEELARTLDSILKNDYPFCARGGDSWKKIVVCVIFDGAIK------------------------KNRGKRD 56 (244)
T ss_pred CEEeeecCCHHHHHHHHHHHHHhhHHHHhcCCCCccEEEEEEEeCCccc------------------------ccCcchH
Confidence 699999997 799999999999654200 0000348999999999999 2456654
Q ss_pred -------HHHHHHHhcCCCEEEEEeCCCCCCcchHHHHHHHHHHhccccccCCCcccccccccccCCCeeeeecchhhhh
Q 019818 147 -------AIRKGMLHSRGELLLMLDADGATKVTDLEKLESQIHAVGRKEYNHGDSVTVDSTFRISDIPIAAFGSRAHLEE 219 (335)
Q Consensus 147 -------aln~g~~~a~~d~v~~~DaD~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~g~~~~~~~ 219 (335)
++|.++..+++|+|+++|+|+.++|++|.++++.|.++++. ..|.|.......
T Consensus 57 ~~~~~~~~~~~~~~~a~~e~i~~~DaD~~~~~~~l~~l~~~~~~~p~v--------------------g~v~g~~~~~~~ 116 (244)
T cd04190 57 SQLWFFNYFCRVLFPDDPEFILLVDADTKFDPDSIVQLYKAMDKDPEI--------------------GGVCGEIHPMGK 116 (244)
T ss_pred HHHHHHHHHHHHhhcCCCCEEEEECCCCcCCHhHHHHHHHHHHhCCCE--------------------EEEEeeeEEcCC
Confidence 56778888899999999999999999999999999766543 344443322111
Q ss_pred HhhhhhhhhHHHHH------HHHHHHHHHHhCCCCccCCCceeeeeHHHHHHhhhhhhh-------------------cc
Q 019818 220 KALATRKWYRNFLM------KGFHLVVILTAGPGIRDTQCGFKMFTRAAARKLFTNIRL-------------------KR 274 (335)
Q Consensus 220 ~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~g~~~~~r~~l~~i~~~~~~-------------------~~ 274 (335)
. .++...+.. ...........+. .....|.+.+||+++++++.+.... ..
T Consensus 117 ~----~~~~~~~q~~ey~~~~~~~~~~~s~~g~-~~~~~G~~~~~R~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (244)
T cd04190 117 K----QGPLVMYQVFEYAISHWLDKAFESVFGF-VTCLPGCFSMYRIEALKGDNGGKGPLLDYAYLTNTVDSLHKKNNLD 191 (244)
T ss_pred c----chhHHHhHheehhhhhhhcccHHHcCCc-eEECCCceEEEEehhhcCCccccccchhhccccCcccchHHHHHHh
Confidence 0 011111111 0111111122222 2334556779999999988433211 23
Q ss_pred ccchHHHHHHhHHcCCCEEE--ee--eEEEecCCC-cccccchHHHHHHH
Q 019818 275 WCFDVELVYLCKRFGIPIIE--IS--VNWSEIPGS-KVNPLSIPNMLWEL 319 (335)
Q Consensus 275 ~~~D~el~~r~~~~G~~i~~--~p--~~~~~~~~s-~~~~~~~~~~~~~~ 319 (335)
.++|.+|+.++..+|+++.+ .| +.+.+.+.+ +..++|..||..+.
T Consensus 192 ~~ED~~l~~~l~~~G~~~~~~~~~~a~~~~~~p~s~~~~~~QR~RW~~g~ 241 (244)
T cd04190 192 LGEDRILCTLLLKAGPKRKYLYVPGAVAETDVPETFVELLSQRRRWINST 241 (244)
T ss_pred HhcccceeHHHhccCCccEEEEecccEEEEECCCCHHHHHHHhHhhhccc
Confidence 57899999999999999999 77 566666666 43445555555443
|
Chitin synthase, also called UDP-N-acetyl-D-glucosamine:chitin 4-beta-N-acetylglucosaminyltransferase, catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of GlcNAc residues formed by covalent beta-1,4 linkages. Chitin is an important component of the cell wall of fungi and bacteria and it is synthesized on the cytoplasmic surface of the cell membrane by membrane bound chitin synthases. Studies with fungi have revealed that most of them contain more than one chitin synthase gene. At least five subclasses of chitin synthases have been identified. |
| >cd02526 GT2_RfbF_like RfbF is a putative dTDP-rhamnosyl transferase | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.2e-21 Score=172.22 Aligned_cols=188 Identities=15% Similarity=0.090 Sum_probs=123.2
Q ss_pred EEEeccCCC-CChHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCcchHHHHHHHHHHcCCCcEEEEEcCCCCChHHHH
Q 019818 70 LIIPAFNEE-HRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNHGKGEAI 148 (335)
Q Consensus 70 Viip~~ne~-~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~vi~~~~~~Gk~~al 148 (335)
+|||+||++ +.|.+||+|+.+ | ..|||||||+|+|.+.+..+. ..+ ++.++..++|.|+++|+
T Consensus 1 ~vI~~yn~~~~~l~~~l~sl~~--------q---~~~iivvDn~s~~~~~~~~~~---~~~--~i~~i~~~~n~G~~~a~ 64 (237)
T cd02526 1 AVVVTYNPDLSKLKELLAALAE--------Q---VDKVVVVDNSSGNDIELRLRL---NSE--KIELIHLGENLGIAKAL 64 (237)
T ss_pred CEEEEecCCHHHHHHHHHHHhc--------c---CCEEEEEeCCCCccHHHHhhc---cCC--cEEEEECCCceehHHhh
Confidence 589999999 999999999987 3 579999999998887665433 223 79999999999999999
Q ss_pred HHHHHhcCC---CEEEEEeCCCCCCcchHHHHH---HHHHHhccccccCCCcccccccccccCCCeeeeecchhhhhHhh
Q 019818 149 RKGMLHSRG---ELLLMLDADGATKVTDLEKLE---SQIHAVGRKEYNHGDSVTVDSTFRISDIPIAAFGSRAHLEEKAL 222 (335)
Q Consensus 149 n~g~~~a~~---d~v~~~DaD~~~~~~~l~~l~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~g~~~~~~~~~~ 222 (335)
|.|++.+++ |+++++|+|+.++|++|.+++ ..+.++++. .+.|..........
T Consensus 65 N~g~~~a~~~~~d~v~~lD~D~~~~~~~l~~l~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~ 123 (237)
T cd02526 65 NIGIKAALENGADYVLLFDQDSVPPPDMVEKLLAYKILSDKNSNI---------------------GAVGPRIIDRRTGE 123 (237)
T ss_pred hHHHHHHHhCCCCEEEEECCCCCcCHhHHHHHHHHHHhhccCCCe---------------------EEEeeeEEcCCCCe
Confidence 999999987 999999999999999999995 334333322 22222211100000
Q ss_pred hhhhhhHHHHHHHHHHHHHHHh-CCCCccCCCceeeeeHHHHHHhhhhhhh-ccccchHHHHHHhHHcCCCEEEee
Q 019818 223 ATRKWYRNFLMKGFHLVVILTA-GPGIRDTQCGFKMFTRAAARKLFTNIRL-KRWCFDVELVYLCKRFGIPIIEIS 296 (335)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~~~~~r~~l~~i~~~~~~-~~~~~D~el~~r~~~~G~~i~~~p 296 (335)
... ................. ........+++.+++|++++++.+.... ...++|.|++.|+.++|+++.++|
T Consensus 124 -~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rr~~~~~~ggfd~~~~~~~eD~d~~~r~~~~G~~~~~~~ 197 (237)
T cd02526 124 -NSP-GVRKSGYKLRIQKEGEEGLKEVDFLITSGSLISLEALEKVGGFDEDLFIDYVDTEWCLRARSKGYKIYVVP 197 (237)
T ss_pred -ecc-ceeccCccceecccccCCceEeeeeeccceEEcHHHHHHhCCCCHHHcCccchHHHHHHHHHcCCcEEEEc
Confidence 000 00000000000000000 0011112233458999999999433222 122469999999999999999998
|
Shigella flexneri RfbF protein is a putative dTDP-rhamnosyl transferase. dTDP rhamnosyl transferases of Shigella flexneri add rhamnose sugars to N-acetyl-glucosamine in the O-antigen tetrasaccharide repeat. Lipopolysaccharide O antigens are important virulence determinants for many bacteria. The variations of sugar composition, the sequence of the sugars and the linkages in the O antigen provide structural diversity of the O antigen. |
| >COG1216 Predicted glycosyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.87 E-value=5.2e-21 Score=175.05 Aligned_cols=216 Identities=20% Similarity=0.200 Sum_probs=151.6
Q ss_pred CceEEEEEeccCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCcchHHHHHHHHHHcCCCcEEEEEcCCCCCh
Q 019818 65 EKYISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNHGK 144 (335)
Q Consensus 65 ~~~vsViip~~ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~vi~~~~~~Gk 144 (335)
.+++++||++||..+.+.+||+++.+ |++...++++|||+|+|++.+.+++.. +| +++++..++|.|-
T Consensus 2 ~~~i~~iiv~yn~~~~l~~~l~~l~~--------~~~~~~~iv~vDn~s~d~~~~~~~~~~--~~--~v~~i~~~~NlG~ 69 (305)
T COG1216 2 MPKISIIIVTYNRGEDLVECLASLAA--------QTYPDDVIVVVDNGSTDGSLEALKARF--FP--NVRLIENGENLGF 69 (305)
T ss_pred CcceEEEEEecCCHHHHHHHHHHHhc--------CCCCCcEEEEccCCCCCCCHHHHHhhc--CC--cEEEEEcCCCccc
Confidence 36799999999999999999999988 567777888999999999998887643 45 8999999999999
Q ss_pred HHHHHHHHHhcCCC---EEEEEeCCCCCCcchHHHHHHHHHHhccccccCCCcccccccccccCCCeeeeecchhhhhHh
Q 019818 145 GEAIRKGMLHSRGE---LLLMLDADGATKVTDLEKLESQIHAVGRKEYNHGDSVTVDSTFRISDIPIAAFGSRAHLEEKA 221 (335)
Q Consensus 145 ~~aln~g~~~a~~d---~v~~~DaD~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~g~~~~~~~~~ 221 (335)
+++.|.|++.|.++ ++++++.|+.+++++|++|++.+++.+..+++.+.....+....+.... +.......
T Consensus 70 agg~n~g~~~a~~~~~~~~l~LN~D~~~~~~~l~~ll~~~~~~~~~~~~~~~i~~~~~~~~~~~~~----~~~~~~~~-- 143 (305)
T COG1216 70 AGGFNRGIKYALAKGDDYVLLLNPDTVVEPDLLEELLKAAEEDPAAGVVGPLIRNYDESLYIDRRG----GESDGLTG-- 143 (305)
T ss_pred hhhhhHHHHHHhcCCCcEEEEEcCCeeeChhHHHHHHHHHHhCCCCeEeeeeEecCCCCcchheec----cccccccc--
Confidence 99999999999654 9999999999999999999999999877665444444433333333111 00000000
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHhCCCCc-cCCCceeeeeHHHHHHhhh-hhhhccccchHHHHHHhHHcCCCEEEee--e
Q 019818 222 LATRKWYRNFLMKGFHLVVILTAGPGIR-DTQCGFKMFTRAAARKLFT-NIRLKRWCFDVELVYLCKRFGIPIIEIS--V 297 (335)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~~~~r~~l~~i~~-~~~~~~~~~D~el~~r~~~~G~~i~~~p--~ 297 (335)
..+....... ........... ...|++.+++++++++++. +.....+.+|.|++.|++++|+++.++| .
T Consensus 144 ---~~~~~~~~~~----~~~~~~~~~~~~~~~G~~~li~~~~~~~vG~~de~~F~y~eD~D~~~R~~~~G~~i~~~p~a~ 216 (305)
T COG1216 144 ---GWRASPLLEI----APDLSSYLEVVASLSGACLLIRREAFEKVGGFDERFFIYYEDVDLCLRARKAGYKIYYVPDAI 216 (305)
T ss_pred ---cceecccccc----cccccchhhhhhhcceeeeEEcHHHHHHhCCCCcccceeehHHHHHHHHHHcCCeEEEeeccE
Confidence 0000000000 00000000001 2466678999999999933 3344666779999999999999999999 4
Q ss_pred EEEecCCC
Q 019818 298 NWSEIPGS 305 (335)
Q Consensus 298 ~~~~~~~s 305 (335)
.++..+.|
T Consensus 217 i~H~~g~s 224 (305)
T COG1216 217 IYHKIGSS 224 (305)
T ss_pred EEEeccCC
Confidence 45544443
|
|
| >PRK15489 nfrB bacteriophage N4 adsorption protein B; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=7.4e-20 Score=180.41 Aligned_cols=197 Identities=13% Similarity=0.107 Sum_probs=137.1
Q ss_pred CCCceEEEEEeccCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCcchHHHHHHHHHHcCCCcEEEEEcCCC-
Q 019818 63 PAEKYISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRN- 141 (335)
Q Consensus 63 ~~~~~vsViip~~ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~vi~~~~~- 141 (335)
.+.|.+||+||+|||+++|++++++++.. .+|+++||+|+.+..+++|.+.++++..++| +++++..+.+
T Consensus 68 ~~~~~vsIlVPa~nE~~VI~~~v~~ll~~-------ldYp~~~I~v~~~~nD~~T~~~~~~~~~~~p--~~~~v~~~~~g 138 (703)
T PRK15489 68 RDEQPLAIMVPAWKEYDVIAKMIENMLAT-------LDYRRYVIFVGTYPNDAETITEVERMRRRYK--RLVRVEVPHDG 138 (703)
T ss_pred cCCCceEEEEeCCCcHHHHHHHHHHHHhc-------CCCCCeEEEEEecCCCccHHHHHHHHhccCC--cEEEEEcCCCC
Confidence 34568999999999999999999998752 4677899999765556689999999988888 7777776654
Q ss_pred -CChHHHHHHHHHhc-------CC--CEEEEEeCCCCCCcchHHHHHHHHHHhccccccCCCcccccccccccCCCeeee
Q 019818 142 -HGKGEAIRKGMLHS-------RG--ELLLMLDADGATKVTDLEKLESQIHAVGRKEYNHGDSVTVDSTFRISDIPIAAF 211 (335)
Q Consensus 142 -~Gk~~aln~g~~~a-------~~--d~v~~~DaD~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 211 (335)
.||+.|+|.|+..+ .+ +.|++.|||+.++|+.|..+ +++...+ ++++
T Consensus 139 p~gKa~ALN~~l~~~~~~e~~~~~~fa~vvi~DAEd~~~P~~L~~~-~~~~~~~----------------------~~iQ 195 (703)
T PRK15489 139 PTCKADCLNWIIQAIFRYEAGHGIEFAGVILHDSEDVLHPLELKYF-NYLLPRK----------------------DLVQ 195 (703)
T ss_pred CCCHHHHHHHHHHHHHhhhhhccCccceEEEEcCCCCCChhHHHHH-HhhcCCc----------------------ceee
Confidence 78999999999886 23 34899999999999999766 4443322 4444
Q ss_pred ecchhhhhHhhhhhhhhHHHHHHHHHHH------HHHHhCCCCccCCCceeeeeHHHHHHh---h--hhhhhccccchHH
Q 019818 212 GSRAHLEEKALATRKWYRNFLMKGFHLV------VILTAGPGIRDTQCGFKMFTRAAARKL---F--TNIRLKRWCFDVE 280 (335)
Q Consensus 212 g~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~g~~~~~r~~l~~i---~--~~~~~~~~~~D~e 280 (335)
+....... ...++........|... .+...+..++- +|...+|||++++++ . ..++.+..+||+|
T Consensus 196 ~pV~~~~~---~~~~~l~~~~~~Efa~~~~~~l~~r~~l~~~ipl-~Gv~~~frr~aL~~l~~~gg~~~~n~~sLTED~D 271 (703)
T PRK15489 196 LPVLSLER---KWYEWVAGTYMDEFAEWHQKDLVVRESLTGTVPS-AGVGTCFSRRALLALMKERGNQPFNTSSLTEDYD 271 (703)
T ss_pred eeeccCCC---ccccHHHHHHHHHHHHHhhhHHHHHHHcCCceec-cCcceeeeHHHHHHHHHhcCCCCCCCCCchHhHH
Confidence 43211110 01233333322222221 22223333432 222458999999887 2 2355667789999
Q ss_pred HHHHhHHcCCCEEEe
Q 019818 281 LVYLCKRFGIPIIEI 295 (335)
Q Consensus 281 l~~r~~~~G~~i~~~ 295 (335)
+.+|+.++|++..+.
T Consensus 272 lg~RL~~~G~r~~f~ 286 (703)
T PRK15489 272 FSFRLAELGMQEIFV 286 (703)
T ss_pred HHHHHHHCCCceEEE
Confidence 999999999999984
|
|
| >cd06436 GlcNAc-1-P_transferase N-acetyl-glucosamine transferase is involved in the synthesis of Poly-beta-1,6-N-acetyl-D-glucosamine | Back alignment and domain information |
|---|
Probab=99.86 E-value=8.1e-21 Score=162.02 Aligned_cols=101 Identities=27% Similarity=0.427 Sum_probs=86.9
Q ss_pred EEEeccCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCcchHHHHHHHHHHcCCCcEEEEEcC---CCCChHH
Q 019818 70 LIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLG---RNHGKGE 146 (335)
Q Consensus 70 Viip~~ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~vi~~~---~~~Gk~~ 146 (335)
||||+|||++.|++||+++.+ |. +++||+||||+|+|+|.++++ +....+ +++++... .+.||+.
T Consensus 1 ViIp~~Ne~~~l~~~l~sl~~--------~~-~~~eIivvdd~S~D~t~~~~~-~~~~~~--~v~~i~~~~~~~~~Gk~~ 68 (191)
T cd06436 1 VLVPCLNEEAVIQRTLASLLR--------NK-PNFLVLVIDDASDDDTAGIVR-LAITDS--RVHLLRRHLPNARTGKGD 68 (191)
T ss_pred CEEeccccHHHHHHHHHHHHh--------CC-CCeEEEEEECCCCcCHHHHHh-heecCC--cEEEEeccCCcCCCCHHH
Confidence 699999999999999999988 34 679999999999999999997 433344 78888753 4689999
Q ss_pred HHHHHHHhcC-----------CCEEEEEeCCCCCCcchHHHHHHHHH
Q 019818 147 AIRKGMLHSR-----------GELLLMLDADGATKVTDLEKLESQIH 182 (335)
Q Consensus 147 aln~g~~~a~-----------~d~v~~~DaD~~~~~~~l~~l~~~~~ 182 (335)
|+|.|++.+. +|+|+++|+|+.++|++|.++...+.
T Consensus 69 aln~g~~~~~~~~~~~g~~~~~d~v~~~DaD~~~~~~~l~~~~~~~~ 115 (191)
T cd06436 69 ALNAAYDQIRQILIEEGADPERVIIAVIDADGRLDPNALEAVAPYFS 115 (191)
T ss_pred HHHHHHHHHhhhccccccCCCccEEEEECCCCCcCHhHHHHHHHhhc
Confidence 9999999875 37999999999999999999888774
|
N-acetyl-glucosamine transferase is responsible for the synthesis of bacteria Poly-beta-1,6-N-acetyl-D-glucosamine (PGA). Poly-beta-1,6-N-acetyl-D-glucosamine is a homopolymer that serves as an adhesion for the maintenance of biofilm structural stability in diverse eubacteria. N-acetyl-glucosamine transferase is the product of gene pgaC. Genetic analysis indicated that all four genes of the pgaABCD locus were required for the PGA production, pgaC being a glycosyltransferase. |
| >TIGR01556 rhamnosyltran L-rhamnosyltransferase | Back alignment and domain information |
|---|
Probab=99.84 E-value=3.4e-20 Score=167.75 Aligned_cols=186 Identities=18% Similarity=0.178 Sum_probs=120.4
Q ss_pred eccCCC-CChHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCcchHHHHHHHHHHcCCCcEEEEEcCCCCChHHHHHHH
Q 019818 73 PAFNEE-HRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNHGKGEAIRKG 151 (335)
Q Consensus 73 p~~ne~-~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~vi~~~~~~Gk~~aln~g 151 (335)
.+||++ +.|.++++++.++ ..|||||||+|+|+ +.+++..+..+ ++++++.++|.|.++|+|.|
T Consensus 1 Vtyn~~~~~l~~~l~sl~~q-----------~~~iiVVDN~S~~~--~~~~~~~~~~~--~i~~i~~~~N~G~a~a~N~G 65 (281)
T TIGR01556 1 VTFNPDLEHLGELITSLPKQ-----------VDRIIAVDNSPHSD--QPLKNARLRGQ--KIALIHLGDNQGIAGAQNQG 65 (281)
T ss_pred CccCccHHHHHHHHHHHHhc-----------CCEEEEEECcCCCc--HhHHHHhccCC--CeEEEECCCCcchHHHHHHH
Confidence 379975 7888888888772 36999999998765 22334334455 79999999999999999999
Q ss_pred HHhc---CCCEEEEEeCCCCCCcchHHHHHHHHHHhccccccCCCcccccccccccCCCeeeeecchhhhhHhhhhhhhh
Q 019818 152 MLHS---RGELLLMLDADGATKVTDLEKLESQIHAVGRKEYNHGDSVTVDSTFRISDIPIAAFGSRAHLEEKALATRKWY 228 (335)
Q Consensus 152 ~~~a---~~d~v~~~DaD~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~g~~~~~~~~~~~~~~~~ 228 (335)
++.| .+|+|+++|+|+.++++++.++++.+++.+.. ..++|++........ ..+..
T Consensus 66 i~~a~~~~~d~i~~lD~D~~~~~~~l~~l~~~~~~~~~~--------------------~~~~~~~~~~~~~~~-~~~~~ 124 (281)
T TIGR01556 66 LDASFRRGVQGVLLLDQDSRPGNAFLAAQWKLLSAENGQ--------------------ACALGPRFFDRGTSR-RLPAI 124 (281)
T ss_pred HHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHhcCCc--------------------eEEECCeEEcCCCcc-cCCce
Confidence 9998 68999999999999999999999999764311 223333221110000 00000
Q ss_pred H--HHHHHHHHHHHHHHhCCCC-ccCCCceeeeeHHHHHHhhh-hhhhccccchHHHHHHhHHcCCCEEEee
Q 019818 229 R--NFLMKGFHLVVILTAGPGI-RDTQCGFKMFTRAAARKLFT-NIRLKRWCFDVELVYLCKRFGIPIIEIS 296 (335)
Q Consensus 229 ~--~~~~~~~~~~~~~~~~~~~-~~~~~g~~~~~r~~l~~i~~-~~~~~~~~~D~el~~r~~~~G~~i~~~p 296 (335)
. ........ .......... ...++|+ +++|+++++++. +.....+.+|.|+++|+.++|+++.++|
T Consensus 125 ~~~~~~~~~~~-~~~~~~~~~~~~~~~sg~-li~~~~~~~iG~fde~~fi~~~D~e~~~R~~~~G~~i~~~~ 194 (281)
T TIGR01556 125 HLDGLLLRQIS-LDGLTTPQKTSFLISSGC-LITREVYQRLGMMDEELFIDHVDTEWSLRAQNYGIPLYIDP 194 (281)
T ss_pred eecccceeeec-ccccCCceeccEEEcCcc-eeeHHHHHHhCCccHhhcccchHHHHHHHHHHCCCEEEEeC
Confidence 0 00000000 0000000011 1133444 799999999933 2222234569999999999999999999
|
Rhamnolipids are glycolipids containing mono- or di- L-rhamnose molecules. Rhamnolipid synthesis occurs by sequential glycosyltransferase reactions involving two distinct rhamnosyltransferase enzymes. In P.aeruginosa, the synthesis of mono-rhamnolipids is catalyzed by rhamnosyltransferase 1, and proceeds by a glycosyltransfer reaction catalyzed by rhamnosyltransferase 2 to yield di-rhamnolipids. |
| >PF10111 Glyco_tranf_2_2: Glycosyltransferase like family 2; InterPro: IPR019290 This conserved domain is found in a set of prokaryotic proteins including putative glucosyltransferases, which are involved in bacterial capsule biosynthesis [, ] | Back alignment and domain information |
|---|
Probab=99.84 E-value=3.5e-19 Score=161.05 Aligned_cols=200 Identities=23% Similarity=0.267 Sum_probs=133.6
Q ss_pred EEEEeccCCCCC--hHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCcchHHHHHHHHHHcCCCcEEEEEcCCC---CC
Q 019818 69 SLIIPAFNEEHR--LPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRN---HG 143 (335)
Q Consensus 69 sViip~~ne~~~--l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~vi~~~~~---~G 143 (335)
|||||++|+... |.+.+.+++.++.. .+...++|||||||+|++.+.+.++++.+... ...++..+.+ .|
T Consensus 1 SiIIPv~~~~~~~~i~~~l~~~l~~l~~---~~~~~~~eiIvvd~~s~~~~~~~l~~~~~~~~--~~~~i~~~~~~~~f~ 75 (281)
T PF10111_consen 1 SIIIPVRNRSERPDILERLRNCLESLSQ---FQSDPDFEIIVVDDGSSDEFDEELKKLCEKNG--FIRYIRHEDNGEPFS 75 (281)
T ss_pred CEEEEecCCccchHHHHHHHHHHHHHHh---cCCCCCEEEEEEECCCchhHHHHHHHHHhccC--ceEEEEcCCCCCCcC
Confidence 699999999864 44555555555543 24678999999999999999888888887765 4446665544 49
Q ss_pred hHHHHHHHHHhcCCCEEEEEeCCCCCCcchHHHHHH---HHHHhccccccCCCcccccccccccCCCeeeeecchhhhhH
Q 019818 144 KGEAIRKGMLHSRGELLLMLDADGATKVTDLEKLES---QIHAVGRKEYNHGDSVTVDSTFRISDIPIAAFGSRAHLEEK 220 (335)
Q Consensus 144 k~~aln~g~~~a~~d~v~~~DaD~~~~~~~l~~l~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~g~~~~~~~~ 220 (335)
++.|+|.|++.|++|+|+++|+|+.++|+.+.++++ .+..++.. ++...+......
T Consensus 76 ~a~arN~g~~~A~~d~l~flD~D~i~~~~~i~~~~~~~~~l~~~~~~---------------------~~~~p~~yl~~~ 134 (281)
T PF10111_consen 76 RAKARNIGAKYARGDYLIFLDADCIPSPDFIEKLLNHVKKLDKNPNA---------------------FLVYPCLYLSEE 134 (281)
T ss_pred HHHHHHHHHHHcCCCEEEEEcCCeeeCHHHHHHHHHHHHHHhcCCCc---------------------eEEEeeeeccch
Confidence 999999999999999999999999999999999999 56554322 222222222211
Q ss_pred hhhhhhhhHHHHHHHHHHHH-HHHhC----CCCccCCCceeeeeHHHHHHhhhhhh-hccc-cchHHHHHHhHHcCCCEE
Q 019818 221 ALATRKWYRNFLMKGFHLVV-ILTAG----PGIRDTQCGFKMFTRAAARKLFTNIR-LKRW-CFDVELVYLCKRFGIPII 293 (335)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~-~~~~~----~~~~~~~~g~~~~~r~~l~~i~~~~~-~~~~-~~D~el~~r~~~~G~~i~ 293 (335)
.. ................ ..... .......+++.+++|+.+.++++..+ ..+| +||.||+.|+.+.|..+.
T Consensus 135 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~i~r~~f~~iGGfDE~f~G~G~ED~D~~~RL~~~~~~~~ 212 (281)
T PF10111_consen 135 GS--EKFYSQFKNLWDHEFLESFISGKNSLWEFIAFASSCFLINREDFLEIGGFDERFRGWGYEDIDFGYRLKKAGYKFK 212 (281)
T ss_pred hh--HHHhhcchhcchHHHHHHHhhccccccccccccceEEEEEHHHHHHhCCCCccccCCCcchHHHHHHHHHcCCcEe
Confidence 11 1111111000000111 11110 11123445778999999999944433 2344 579999999999999998
Q ss_pred Eee
Q 019818 294 EIS 296 (335)
Q Consensus 294 ~~p 296 (335)
..+
T Consensus 213 ~~~ 215 (281)
T PF10111_consen 213 RSP 215 (281)
T ss_pred cCh
Confidence 887
|
|
| >cd06423 CESA_like CESA_like is the cellulose synthase superfamily | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.5e-20 Score=154.61 Aligned_cols=108 Identities=29% Similarity=0.484 Sum_probs=95.2
Q ss_pred EEEeccCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCcchHHHHHHHHHHcCCCcEEEEEcCCCCChHHHHH
Q 019818 70 LIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNHGKGEAIR 149 (335)
Q Consensus 70 Viip~~ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~vi~~~~~~Gk~~aln 149 (335)
||||+||+++.|.++|+++++ |.+.++||+||||+|+|+|.+.+.+.....+ ..+.++..+++.|++.++|
T Consensus 1 Viip~~n~~~~l~~~l~sl~~--------q~~~~~~iivvdd~s~d~t~~~~~~~~~~~~-~~~~~~~~~~~~g~~~~~n 71 (180)
T cd06423 1 IIVPAYNEEAVIERTIESLLA--------LDYPKLEVIVVDDGSTDDTLEILEELAALYI-RRVLVVRDKENGGKAGALN 71 (180)
T ss_pred CeecccChHHHHHHHHHHHHh--------CCCCceEEEEEeCCCccchHHHHHHHhcccc-ceEEEEEecccCCchHHHH
Confidence 689999999999999999988 4567899999999999999999988866553 1467788888999999999
Q ss_pred HHHHhcCCCEEEEEeCCCCCCcchHHHHHHHHHHhcc
Q 019818 150 KGMLHSRGELLLMLDADGATKVTDLEKLESQIHAVGR 186 (335)
Q Consensus 150 ~g~~~a~~d~v~~~DaD~~~~~~~l~~l~~~~~~~~~ 186 (335)
.|++.+++|+++++|+|+.+++++|.+++..+...++
T Consensus 72 ~~~~~~~~~~i~~~D~D~~~~~~~l~~~~~~~~~~~~ 108 (180)
T cd06423 72 AGLRHAKGDIVVVLDADTILEPDALKRLVVPFFADPK 108 (180)
T ss_pred HHHHhcCCCEEEEECCCCCcChHHHHHHHHHhccCCC
Confidence 9999999999999999999999999999777766544
|
The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis protein catalyzes the |
| >cd02511 Beta4Glucosyltransferase UDP-glucose LOS-beta-1,4 glucosyltransferase is required for biosynthesis of lipooligosaccharide | Back alignment and domain information |
|---|
Probab=99.72 E-value=4.1e-17 Score=143.19 Aligned_cols=100 Identities=20% Similarity=0.267 Sum_probs=90.0
Q ss_pred EEEEEeccCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCcchHHHHHHHHHHcCCCcEEEEEcCCCCChHHH
Q 019818 68 ISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNHGKGEA 147 (335)
Q Consensus 68 vsViip~~ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~vi~~~~~~Gk~~a 147 (335)
|||+||+|||++.|++||+|+..+ ..|||||||||+|+|.+++++. +++++.. ++.|.+.+
T Consensus 2 isvii~~~Ne~~~l~~~l~sl~~~-----------~~eiivvD~gStD~t~~i~~~~-------~~~v~~~-~~~g~~~~ 62 (229)
T cd02511 2 LSVVIITKNEERNIERCLESVKWA-----------VDEIIVVDSGSTDRTVEIAKEY-------GAKVYQR-WWDGFGAQ 62 (229)
T ss_pred EEEEEEeCCcHHHHHHHHHHHhcc-----------cCEEEEEeCCCCccHHHHHHHc-------CCEEEEC-CCCChHHH
Confidence 899999999999999999999762 2499999999999999988754 5778877 78999999
Q ss_pred HHHHHHhcCCCEEEEEeCCCCCCcchHHHHHHHHHHhcc
Q 019818 148 IRKGMLHSRGELLLMLDADGATKVTDLEKLESQIHAVGR 186 (335)
Q Consensus 148 ln~g~~~a~~d~v~~~DaD~~~~~~~l~~l~~~~~~~~~ 186 (335)
+|.|+..+++|+|+++|+|..++|+.++.+.+.+.+++.
T Consensus 63 ~n~~~~~a~~d~vl~lDaD~~~~~~~~~~l~~~~~~~~~ 101 (229)
T cd02511 63 RNFALELATNDWVLSLDADERLTPELADEILALLATDDY 101 (229)
T ss_pred HHHHHHhCCCCEEEEEeCCcCcCHHHHHHHHHHHhCCCC
Confidence 999999999999999999999999999999999977643
|
UDP-glucose: lipooligosaccharide (LOS) beta-1-4-glucosyltransferase catalyzes the addition of the first residue, glucose, of the lacto-N-neotetrase structure to HepI of the LOS inner core. LOS is the major constituent of the outer leaflet of the outer membrane of gram-positive bacteria. It consists of a short oligosaccharide chain of variable composition (alpha chain) attached to a branched inner core which is lined in turn to lipid A. Beta 1,4 glucosyltransferase is required to attach the alpha chain to the inner core. |
| >cd00761 Glyco_tranf_GTA_type Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold | Back alignment and domain information |
|---|
Probab=99.69 E-value=9.5e-16 Score=123.84 Aligned_cols=153 Identities=29% Similarity=0.347 Sum_probs=123.1
Q ss_pred EEEeccCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCcchHHHHHHHHHHcCCCcEEEEEcCCCCChHHHHH
Q 019818 70 LIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNHGKGEAIR 149 (335)
Q Consensus 70 Viip~~ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~vi~~~~~~Gk~~aln 149 (335)
|+||++|+.+.+..+++++.+ +.+.+.|++++||++++++.+.+.+...... .+..+..+++.|++.++|
T Consensus 1 iii~~~~~~~~l~~~l~s~~~--------~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~g~~~~~~ 70 (156)
T cd00761 1 VIIPAYNEEPYLERCLESLLA--------QTYPNFEVIVVDDGSTDGTLEILEEYAKKDP--RVIRVINEENQGLAAARN 70 (156)
T ss_pred CEEeecCcHHHHHHHHHHHHh--------CCccceEEEEEeCCCCccHHHHHHHHHhcCC--CeEEEEecCCCChHHHHH
Confidence 689999999999999999987 3556899999999999999999988866523 567777888999999999
Q ss_pred HHHHhcCCCEEEEEeCCCCCCcchHHHHHHHHHHhccccccCCCcccccccccccCCCeeeeecchhhhhHhhhhhhhhH
Q 019818 150 KGMLHSRGELLLMLDADGATKVTDLEKLESQIHAVGRKEYNHGDSVTVDSTFRISDIPIAAFGSRAHLEEKALATRKWYR 229 (335)
Q Consensus 150 ~g~~~a~~d~v~~~DaD~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~g~~~~~~~~~~~~~~~~~ 229 (335)
.|+..+.+|+++++|+|..++++++..++..+...++. .++.+.
T Consensus 71 ~~~~~~~~d~v~~~d~D~~~~~~~~~~~~~~~~~~~~~--------------------~~v~~~---------------- 114 (156)
T cd00761 71 AGLKAARGEYILFLDADDLLLPDWLERLVAELLADPEA--------------------DAVGGP---------------- 114 (156)
T ss_pred HHHHHhcCCEEEEECCCCccCccHHHHHHHHHhcCCCc--------------------eEEecc----------------
Confidence 99999999999999999999999999986665544332 455443
Q ss_pred HHHHHHHHHHHHHHhCCCCccCCCceeeeeHHHHHHhhhhhhh-ccccchHHHHHHhHHcCCCE
Q 019818 230 NFLMKGFHLVVILTAGPGIRDTQCGFKMFTRAAARKLFTNIRL-KRWCFDVELVYLCKRFGIPI 292 (335)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~r~~l~~i~~~~~~-~~~~~D~el~~r~~~~G~~i 292 (335)
++.++++++++++.+.... ..+.+|.++..++...|..+
T Consensus 115 ------------------------~~~~~~~~~~~~~~~~~~~~~~~~ed~~~~~~~~~~g~~~ 154 (156)
T cd00761 115 ------------------------GNLLFRRELLEEIGGFDEALLSGEEDDDFLLRLLRGGKVA 154 (156)
T ss_pred ------------------------chheeeHHHHHHhCCcchHhcCCcchHHHHHHHHhhcccc
Confidence 4568999999999433322 33357999999999888654
|
Glycosyltransferases (GTs) are enzymes that synthesize oligosaccharides, polysaccharides, and glycoconjugates by transferring the sugar moiety from an activated nucleotide-sugar donor to an acceptor molecule, which may be a growing oligosaccharide, a lipid, or a protein. Based on the stereochemistry of the donor and acceptor molecules, GTs are classified as either retaining or inverting enzymes. To date, all GT structures adopt one of two possible folds, termed GT-A fold and GT-B fold. This hierarchy includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. The majority of the proteins in this superfamily are Glycosyltransferase family 2 (GT-2) proteins. But it als |
| >COG0463 WcaA Glycosyltransferases involved in cell wall biogenesis [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.69 E-value=2.9e-16 Score=133.60 Aligned_cols=106 Identities=35% Similarity=0.558 Sum_probs=93.6
Q ss_pred CceEEEEEeccCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCcchHHHHHHHHHHcCCCcEEEEEcCCCCCh
Q 019818 65 EKYISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNHGK 144 (335)
Q Consensus 65 ~~~vsViip~~ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~vi~~~~~~Gk 144 (335)
.|.+||+||+||+++.|.++|+|+.++. +.++|||||||||+|+|.++++++..+.+ .+.......|.|+
T Consensus 2 ~~~~siiip~~n~~~~l~~~l~s~~~q~--------~~~~eiivvddgs~d~t~~~~~~~~~~~~--~~~~~~~~~~~g~ 71 (291)
T COG0463 2 MPKVSVVIPTYNEEEYLPEALESLLNQT--------YKDFEIIVVDDGSTDGTTEIAIEYGAKDV--RVIRLINERNGGL 71 (291)
T ss_pred CccEEEEEeccchhhhHHHHHHHHHhhh--------hcceEEEEEeCCCCCChHHHHHHHhhhcc--eEEEeecccCCCh
Confidence 3679999999999999999999999954 44589999999999999999999987753 5667777789999
Q ss_pred HHHHHHHHHhcCCCEEEEEeCCCCCCcchHHHHHHHH
Q 019818 145 GEAIRKGMLHSRGELLLMLDADGATKVTDLEKLESQI 181 (335)
Q Consensus 145 ~~aln~g~~~a~~d~v~~~DaD~~~~~~~l~~l~~~~ 181 (335)
+.|+|.|+..+.+++++++|+|.. +++.+..+....
T Consensus 72 ~~~~~~~~~~~~~~~~~~~d~d~~-~~~~~~~~~~~~ 107 (291)
T COG0463 72 GAARNAGLEYARGDYIVFLDADDQ-HPPELIPLVAAG 107 (291)
T ss_pred HHHHHhhHHhccCCEEEEEccCCC-CCHHHHHHHHHh
Confidence 999999999999999999999999 999988855444
|
|
| >KOG3736 consensus Polypeptide N-acetylgalactosaminyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.8e-13 Score=131.40 Aligned_cols=216 Identities=19% Similarity=0.117 Sum_probs=153.8
Q ss_pred CCCceEEEEEeccCCC-CChHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCcch-HHHHHHHHHHcCCCcEEEEEcCC
Q 019818 63 PAEKYISLIIPAFNEE-HRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGT-KRVAFDFVRKYTVDNVRIILLGR 140 (335)
Q Consensus 63 ~~~~~vsViip~~ne~-~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t-~~~~~~~~~~~~~~~i~vi~~~~ 140 (335)
...|..||||+.+||+ .++-+++.|+++... +..--|||+|||+|+.+- ...+++..+++. .+++++.++
T Consensus 139 ~~Lp~~Svii~f~nE~~s~llRtv~Svi~rtp------~~lLkEIiLVdD~S~~~~l~~~Ld~y~k~~~--~v~i~r~~~ 210 (578)
T KOG3736|consen 139 DKLPTTSVIIIFHNEAWSTLLRTVHSVINRTP------PYLLKEIILVDDFSDRDHLKDKLEEYVKRFS--KVRILRTKK 210 (578)
T ss_pred cccCCCceEEEEecCCCcchhheEEeehccCC------hhHeEEEEEeecCcchhhhhhhhHHHHhhhc--ceeEEeecc
Confidence 4478999999999995 456677777776432 334589999999998776 566788878877 599999999
Q ss_pred CCChHHHHHHHHHhcCCCEEEEEeCCCCCCcchHHHHHHHHHHhccccccCCCcccccccccccCCCeeeeecchhhhhH
Q 019818 141 NHGKGEAIRKGMLHSRGELLLMLDADGATKVTDLEKLESQIHAVGRKEYNHGDSVTVDSTFRISDIPIAAFGSRAHLEEK 220 (335)
Q Consensus 141 ~~Gk~~aln~g~~~a~~d~v~~~DaD~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~g~~~~~~~~ 220 (335)
+.|...|+..|...|+||+++|+|+-++...+||+.+++.+..+....+..-..++++.++.|..+-....|...
T Consensus 211 R~GLIrARl~GA~~A~geVL~FLDsHcE~n~gWLePLL~~I~~~r~tvv~PvID~Id~~tf~y~~~~~~~rGgFd----- 285 (578)
T KOG3736|consen 211 REGLIRARLLGASMATGEVLTFLDSHCEVNVGWLEPLLARIAEDRKTVVCPVIDVIDDNTFEYEKQSELMRGGFD----- 285 (578)
T ss_pred hhhhHHHHhhhhhhhhchheeeeecceeEecCcchHHHHHhhhcCceeecceEEeecCcCceecccCccceeeee-----
Confidence 999999999999999999999999999999999999999999876555544455667777777753222222221
Q ss_pred hhhhhhhhHHHHHHHHHHHHHH---HhCCCCccCCCceeeeeHHHHHHhhhhh---hhccccchHHHHHHhHHcCCCEEE
Q 019818 221 ALATRKWYRNFLMKGFHLVVIL---TAGPGIRDTQCGFKMFTRAAARKLFTNI---RLKRWCFDVELVYLCKRFGIPIIE 294 (335)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~g~~~~~r~~l~~i~~~~---~~~~~~~D~el~~r~~~~G~~i~~ 294 (335)
+....++..-......+. .....-+...||.++++|+.|.+++... +..+ ++..||.+|+...|-++.-
T Consensus 286 ----W~l~f~w~~lP~~~~~~~~~~t~PirsPtMaGglFAI~r~yF~eiG~yD~gMdiwG-GENlElSfrvWqCGG~lei 360 (578)
T KOG3736|consen 286 ----WELTFKWERLPLPEEKRRELPTDPIRSPTMAGGLFAIDRKYFGELGSYDEGMDIWG-GENLELSFRVWQCGGRLEI 360 (578)
T ss_pred ----cceeEEeccCCccHhhcccCCCCCcCCcccCCceEEeeHHHHhhccCccccccccC-hhhceeeEEEeccCCeEEe
Confidence 011111111111111121 1222234455777899999999993322 1112 3588999999999999999
Q ss_pred ee
Q 019818 295 IS 296 (335)
Q Consensus 295 ~p 296 (335)
+|
T Consensus 361 ~P 362 (578)
T KOG3736|consen 361 VP 362 (578)
T ss_pred cC
Confidence 98
|
|
| >KOG2547 consensus Ceramide glucosyltransferase [Lipid transport and metabolism; Cell wall/membrane/envelope biogenesis] | Back alignment and domain information |
|---|
Probab=99.42 E-value=2.1e-12 Score=115.42 Aligned_cols=201 Identities=13% Similarity=0.062 Sum_probs=144.7
Q ss_pred CCCceEEEEEeccCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCcchHHHHHHHHHHcCCCcEEEEEcCCCC
Q 019818 63 PAEKYISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNH 142 (335)
Q Consensus 63 ~~~~~vsViip~~ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~vi~~~~~~ 142 (335)
+..|.||||.|...-++++-..+++.... .|+++|++++-+.++|+..++++++.++||....+++.-.+..
T Consensus 82 ~~LPgVSiikPl~G~d~nl~~Nlesffts--------~Y~~~ElLfcv~s~eDpAi~vv~~Ll~kyp~VdAklf~gG~~v 153 (431)
T KOG2547|consen 82 PKLPGVSIIKPLKGVDPNLYHNLESFFTS--------QYHKYELLFCVESSEDPAIEVVERLLKKYPNVDAKLFFGGEKV 153 (431)
T ss_pred CCCCCceEEeecccCCchhHHhHHHHHhh--------ccCceEEEEEEccCCCcHHHHHHHHHhhCCCcceEEEEccccc
Confidence 46788999999999999998888888875 4559999999999999999999999999997777888877777
Q ss_pred C---hHHHHHHHHHhcCCCEEEEEeCCCCCCcchHHHHHHHHHHhccccccCCCcccccccccccCCCeeeeecchhhhh
Q 019818 143 G---KGEAIRKGMLHSRGELLLMLDADGATKVTDLEKLESQIHAVGRKEYNHGDSVTVDSTFRISDIPIAAFGSRAHLEE 219 (335)
Q Consensus 143 G---k~~aln~g~~~a~~d~v~~~DaD~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~g~~~~~~~ 219 (335)
| |-.++--|.+.++.|+|++.|+|..+.||.+..|...+.++..- ..|.|.+..-+.
T Consensus 154 g~npKInN~mpgy~~a~ydlvlisDsgI~m~pdtildm~t~M~shekm--------------------alvtq~py~~dr 213 (431)
T KOG2547|consen 154 GLNPKINNMMPGYRAAKYDLVLISDSGIFMKPDTILDMATTMMSHEKM--------------------ALVTQTPYCKDR 213 (431)
T ss_pred ccChhhhccCHHHHHhcCCEEEEecCCeeecCchHHHHHHhhhcccce--------------------eeecCCceeecc
Confidence 7 77888889999999999999999999999999999999876554 355554443222
Q ss_pred HhhhhhhhhHHHHHHHHHHH-HHHHhCCCCc---cCCCceeeeeHHHHHHhhhhh-hhccccchHHHHHHhHHcCCCEEE
Q 019818 220 KALATRKWYRNFLMKGFHLV-VILTAGPGIR---DTQCGFKMFTRAAARKLFTNI-RLKRWCFDVELVYLCKRFGIPIIE 294 (335)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~---~~~~g~~~~~r~~l~~i~~~~-~~~~~~~D~el~~r~~~~G~~i~~ 294 (335)
++. -..+....+... .+....-+.. ..+|...++|++++++..+-. ......+|+-+......+|++-..
T Consensus 214 ~Gf-----~atle~~~fgTsh~r~yl~~n~~~~~c~tgms~~mrK~~ld~~ggi~~f~~yLaedyFaaksllSRG~ksai 288 (431)
T KOG2547|consen 214 QGF-----DATLEQVYFGTSHPRIYLSGNVLGFNCSTGMSSMMRKEALDECGGISAFGGYLAEDYFAAKSLLSRGWKSAI 288 (431)
T ss_pred ccc-----hhhhhheeeccCCceEEEccccccccccccHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhhhhhhhh
Confidence 211 000100000000 0111111111 123334679999999984332 234555688888888999987766
Q ss_pred ee
Q 019818 295 IS 296 (335)
Q Consensus 295 ~p 296 (335)
..
T Consensus 289 st 290 (431)
T KOG2547|consen 289 ST 290 (431)
T ss_pred cc
Confidence 54
|
|
| >KOG3737 consensus Predicted polypeptide N-acetylgalactosaminyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.32 E-value=2.5e-12 Score=115.48 Aligned_cols=223 Identities=17% Similarity=0.132 Sum_probs=145.5
Q ss_pred CCCceEEEEEeccCCC-CChHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCcch-HHHHHHHHHHcCCCcEEEEEcCC
Q 019818 63 PAEKYISLIIPAFNEE-HRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGT-KRVAFDFVRKYTVDNVRIILLGR 140 (335)
Q Consensus 63 ~~~~~vsViip~~ne~-~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t-~~~~~~~~~~~~~~~i~vi~~~~ 140 (335)
...|+.||||..+||. ..|-+|+.|++.... +..--||+.|||-|+.+- .+.+.+....+.+ -+.|+++++
T Consensus 152 e~Lpt~SVviVFHNEGws~LmRTVHSVi~RsP------~~~l~eivlvDDfSdKehLkekLDeYv~~fnG-lVkV~Rne~ 224 (603)
T KOG3737|consen 152 ENLPTSSVVIVFHNEGWSTLMRTVHSVIKRSP------RKYLAEIVLVDDFSDKEHLKEKLDEYVKLFNG-LVKVFRNER 224 (603)
T ss_pred ccCCcceEEEEEecCccHHHHHHHHHHHhcCc------HHhhheEEEeccCCccHHHHHHHHHHHHHhcC-EEEEEecch
Confidence 4578899999999995 456777777776311 222469999999998764 6777777777763 688999999
Q ss_pred CCChHHHHHHHHHhcCCCEEEEEeCCCCCCcchHHHHHHHHHHhccccccCCCcccccccccccCCCeeeeecchhhhhH
Q 019818 141 NHGKGEAIRKGMLHSRGELLLMLDADGATKVTDLEKLESQIHAVGRKEYNHGDSVTVDSTFRISDIPIAAFGSRAHLEEK 220 (335)
Q Consensus 141 ~~Gk~~aln~g~~~a~~d~v~~~DaD~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~g~~~~~~~~ 220 (335)
+.|.-.|+..|.++|.|+.++|+||.+++..+|+..|++++.++...--+.-...++.+++.|- -|.|..... ..
T Consensus 225 REGLI~aRSiGA~~atGeV~ifLDAHCEVntNWlpPLlAPI~rdRtvmTVP~IDgId~n~~Eyr----pvyG~dn~h-~r 299 (603)
T KOG3737|consen 225 REGLIQARSIGAQKATGEVLIFLDAHCEVNTNWLPPLLAPISRDRTVMTVPLIDGIDGNTYEYR----PVYGGDNDH-AR 299 (603)
T ss_pred hhhhhhhhccchhhccccEEEEEecceeeecccccccccccccCceEEEEeeeeeecCCceEEe----eccCCcchh-hc
Confidence 9999999999999999999999999999999999999999977533222211222233334333 233333211 11
Q ss_pred hhhhhhhhHHHHH-HHHHHHHHHHhCCCCc--cCCCceeeeeHHHHHHhhhh-hhhccc-cchHHHHHHhHHcCCCEEEe
Q 019818 221 ALATRKWYRNFLM-KGFHLVVILTAGPGIR--DTQCGFKMFTRAAARKLFTN-IRLKRW-CFDVELVYLCKRFGIPIIEI 295 (335)
Q Consensus 221 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~--~~~~g~~~~~r~~l~~i~~~-~~~~~~-~~D~el~~r~~~~G~~i~~~ 295 (335)
+...++.+.+-.. .......+.....++. .-.||.+++.|+.|.+++.. ....-| ++..|+.+++.+.|-+|.++
T Consensus 300 GifeWgmLyKe~~~t~rE~r~RkhnsePyRSPthAGGLfAInRe~F~ELG~YDpgLqiWGGEnfElSfKIWQCGG~i~fV 379 (603)
T KOG3737|consen 300 GIFEWGMLYKEVPLTPREKRLRKHNSEPYRSPTHAGGLFAINREFFFELGLYDPGLQIWGGENFELSFKIWQCGGKILFV 379 (603)
T ss_pred chhhhhheeccCCCCHHHHHhhhccCCCCCCcccccceeeehHHHHHHhccCCCcceeecCcceeEEEEEEeeCCEEEEE
Confidence 1111222111111 1111112222233333 34477889999999998222 111111 35788999999999999999
Q ss_pred ee
Q 019818 296 SV 297 (335)
Q Consensus 296 p~ 297 (335)
|.
T Consensus 380 PC 381 (603)
T KOG3737|consen 380 PC 381 (603)
T ss_pred Ec
Confidence 93
|
|
| >KOG3738 consensus Predicted polypeptide N-acetylgalactosaminyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.30 E-value=2.3e-12 Score=115.98 Aligned_cols=212 Identities=16% Similarity=0.099 Sum_probs=138.2
Q ss_pred CCceEEEEEeccCCCC-ChHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCcchHHHHHHHHHHcCCCcEEEEEcCCCC
Q 019818 64 AEKYISLIIPAFNEEH-RLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNH 142 (335)
Q Consensus 64 ~~~~vsViip~~ne~~-~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~vi~~~~~~ 142 (335)
+.|..||||..+||+. .|-+|+.|+++... +..-.|||+|||+|+|.+. ...+ .+.+ +++++++.++.
T Consensus 122 dlp~TsviITfHNEARS~LLRTv~SvlnrsP------~~li~EiILVDD~S~Dped--~~~L-~ri~--kvr~LRN~~Re 190 (559)
T KOG3738|consen 122 DLPPTSVIITFHNEARSTLLRTVVSVLNRSP------EHLIHEIILVDDFSQDPED--GKLL-KRIP--KVRVLRNNERE 190 (559)
T ss_pred CCCCceEEEEeccHHHHHHHHHHHHHHcCCh------HHhhheeEEecCCCCChHH--HHHH-hhhh--eeeeecccchh
Confidence 4778999999999964 46677777776322 2234799999999998753 3333 4445 89999999999
Q ss_pred ChHHHHHHHHHhcCCCEEEEEeCCCCCCcchHHHHHHHHHHhccccccCCCccccccccccc-CCCeeeeecchhhhhHh
Q 019818 143 GKGEAIRKGMLHSRGELLLMLDADGATKVTDLEKLESQIHAVGRKEYNHGDSVTVDSTFRIS-DIPIAAFGSRAHLEEKA 221 (335)
Q Consensus 143 Gk~~aln~g~~~a~~d~v~~~DaD~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~g~~~~~~~~~ 221 (335)
|....++.|...|++.++.|+|+.+++..+||+.|++...++....+..-..++.-.++.|. ..+++-.|--
T Consensus 191 GLirSRvrGAdvA~a~vltFLDSHcEvN~~WLePLL~Rvaed~trvVsPiiDvIn~dnf~Y~~asadLrGGFD------- 263 (559)
T KOG3738|consen 191 GLIRSRVRGADVAQATVLTFLDSHCEVNEGWLEPLLERVAEDTTRVVSPIIDVINLDNFSYVGASADLRGGFD------- 263 (559)
T ss_pred hhhhhhccccccccceEEEEEecceeecchhhHHHHHHHhhcccceeecccccccccccccccchhhhcCCcc-------
Confidence 99999999999999999999999999999999999999988755443222222222222222 1111111111
Q ss_pred hhhhhhhHHHHHHHHHHHHHH---HhCCCCccCCCceeeeeHHHHHHhhhh-hhhccc-cchHHHHHHhHHcCCCEEEee
Q 019818 222 LATRKWYRNFLMKGFHLVVIL---TAGPGIRDTQCGFKMFTRAAARKLFTN-IRLKRW-CFDVELVYLCKRFGIPIIEIS 296 (335)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~g~~~~~r~~l~~i~~~-~~~~~~-~~D~el~~r~~~~G~~i~~~p 296 (335)
++...++.......-.++ .....-+...||.+++.++.|++++.. ....-| ++..|+.+|....|-.+.-+|
T Consensus 264 ---WsLhF~We~~~~eqr~sr~~Pt~PirtP~iAGGlfvidk~wF~~LGkyd~~mdiWGGEn~ElsfrvW~CGGslEIvP 340 (559)
T KOG3738|consen 264 ---WSLHFKWEQMQLEQRESRADPTAPIRTPAIAGGLFVIDKEWFNELGKYDMDMDIWGGENLELSFRVWQCGGSLEIVP 340 (559)
T ss_pred ---eEEEEEehhcCHHHHhhccCCCCcccCccccceeEEecHHHHHHhcccCccccccCCcceEEEEEEEeeCCeeEEEe
Confidence 111111111000001111 122334456788889999999998322 111111 457889999999999988888
|
|
| >PF13506 Glyco_transf_21: Glycosyl transferase family 21 | Back alignment and domain information |
|---|
Probab=99.26 E-value=2.5e-10 Score=95.70 Aligned_cols=138 Identities=14% Similarity=0.102 Sum_probs=96.0
Q ss_pred EEEEcCCCCC---hHHHHHHHHHh-cCCCEEEEEeCCCCCCcchHHHHHHHHHHhccccccCCCcccccccccccCCCee
Q 019818 134 RIILLGRNHG---KGEAIRKGMLH-SRGELLLMLDADGATKVTDLEKLESQIHAVGRKEYNHGDSVTVDSTFRISDIPIA 209 (335)
Q Consensus 134 ~vi~~~~~~G---k~~aln~g~~~-a~~d~v~~~DaD~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (335)
+++..++..| |..++..|++. +++|+++++|+|..++|++|.+++..+.+ ++. .+
T Consensus 5 ~lvv~~~~~g~N~Kv~nL~~~~~~~a~~d~~~~~DsDi~v~p~~L~~lv~~l~~-p~v--------------------gl 63 (175)
T PF13506_consen 5 RLVVGGPPRGCNPKVNNLAQGLEAGAKYDYLVISDSDIRVPPDYLRELVAPLAD-PGV--------------------GL 63 (175)
T ss_pred EEEECCCCCCCChHHHHHHHHHHhhCCCCEEEEECCCeeECHHHHHHHHHHHhC-CCC--------------------cE
Confidence 3555555555 99999999998 99999999999999999999999999976 333 46
Q ss_pred eeecchhhhhHhhhhhhhhHHHHHHHHHHHHHHHh-CCCCccCCCceeeeeHHHHHHhhhh-hhhccccchHHHHHHhHH
Q 019818 210 AFGSRAHLEEKALATRKWYRNFLMKGFHLVVILTA-GPGIRDTQCGFKMFTRAAARKLFTN-IRLKRWCFDVELVYLCKR 287 (335)
Q Consensus 210 v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~~~~~r~~l~~i~~~-~~~~~~~~D~el~~r~~~ 287 (335)
|.+.....+.. ++................. ........|++.++||++|+++++. .......+|+.+..++.+
T Consensus 64 Vt~~~~~~~~~-----~~~~~l~~~~~~~~~~~~~a~~~~~~~~G~~m~~rr~~L~~~GG~~~l~~~ladD~~l~~~~~~ 138 (175)
T PF13506_consen 64 VTGLPRGVPAR-----GFWSRLEAAFFNFLPGVLQALGGAPFAWGGSMAFRREALEEIGGFEALADYLADDYALGRRLRA 138 (175)
T ss_pred EEecccccCCc-----CHHHHHHHHHHhHHHHHHHHhcCCCceecceeeeEHHHHHHcccHHHHhhhhhHHHHHHHHHHH
Confidence 66644332222 1222221111111111111 2245556777889999999999333 223577889999999999
Q ss_pred cCCCEEEeee
Q 019818 288 FGIPIIEISV 297 (335)
Q Consensus 288 ~G~~i~~~p~ 297 (335)
+|+++...|.
T Consensus 139 ~G~~v~~~~~ 148 (175)
T PF13506_consen 139 RGYRVVLSPY 148 (175)
T ss_pred CCCeEEEcch
Confidence 9999999983
|
|
| >COG2943 MdoH Membrane glycosyltransferase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.22 E-value=3.1e-09 Score=99.30 Aligned_cols=217 Identities=17% Similarity=0.121 Sum_probs=124.7
Q ss_pred CCCceEEEEEeccCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCcchHHHHHH-----HHHHcC-CCcEEEE
Q 019818 63 PAEKYISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFD-----FVRKYT-VDNVRII 136 (335)
Q Consensus 63 ~~~~~vsViip~~ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~-----~~~~~~-~~~i~vi 136 (335)
+...+..|++|+|||+. .+.+..+...-.++.......+++++|+.| |.|+....+++ ++++.. ..+|-+.
T Consensus 141 p~~hrTAilmPiynEd~--~rVfAgLrA~~eSla~Tg~~~~FD~FVLSD-s~dpdialAEq~a~~~l~~e~~g~~~ifYR 217 (736)
T COG2943 141 PDLHRTAILMPIYNEDV--NRVFAGLRATYESLAATGHAEHFDFFVLSD-SRDPDIALAEQKAWAELCRELGGEGNIFYR 217 (736)
T ss_pred CcccceeEEeeccccCH--HHHHHHHHHHHHHHHhhCCcccceEEEEcC-CCCchhhhhHHHHHHHHHHHhCCCCceeee
Confidence 44456899999999984 344444433222222234566899999999 45554444443 333332 3478888
Q ss_pred EcCCCCC-hHHHHHHHHHh--cCCCEEEEEeCCCCCCcchHHHHHHHHHHhccccccCCCcccccccccccCCCeeeeec
Q 019818 137 LLGRNHG-KGEAIRKGMLH--SRGELLLMLDADGATKVTDLEKLESQIHAVGRKEYNHGDSVTVDSTFRISDIPIAAFGS 213 (335)
Q Consensus 137 ~~~~~~G-k~~aln~g~~~--a~~d~v~~~DaD~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~g~ 213 (335)
++.+|.| |++++..-.+. ..+++++++|||+.+..+++.++++.++.+++.|.+- .. -.+.|.
T Consensus 218 rRr~n~~RKaGNIaDfcrRwG~~Y~~MlVLDADSvMtgd~lvrLv~~ME~~P~aGlIQ-------------t~-P~~~gg 283 (736)
T COG2943 218 RRRRNVKRKAGNIADFCRRWGSAYSYMLVLDADSVMTGDCLVRLVRLMEANPDAGLIQ-------------TS-PKASGG 283 (736)
T ss_pred hHhhhhcccccCHHHHHHHhCcccceEEEeecccccCchHHHHHHHHHhhCCCCceee-------------cc-hhhcCc
Confidence 7778877 55555544444 2459999999999999999999999999998875311 00 122222
Q ss_pred chhhhhHhhhhhhhhHHHHHHHHHHHHHH---HhCCCCccCCCceeeeeHHHHHHh-----hhhhhh---ccccchHHHH
Q 019818 214 RAHLEEKALATRKWYRNFLMKGFHLVVIL---TAGPGIRDTQCGFKMFTRAAARKL-----FTNIRL---KRWCFDVELV 282 (335)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~g~~~~~r~~l~~i-----~~~~~~---~~~~~D~el~ 282 (335)
.... ....+|....+..++.. .....-+..-|...++|.+.|-+. +++... .-...|.-=.
T Consensus 284 ~TL~--------AR~qQFatrvYGpl~~~GLawW~~~Es~yWGHNAIIRt~aF~~hcgLp~LpG~~pFgG~ilSHDfvEA 355 (736)
T COG2943 284 DTLY--------ARCQQFATRVYGPLFTAGLAWWQLGESHYWGHNAIIRTKAFIEHCGLPPLPGRGPFGGHILSHDFVEA 355 (736)
T ss_pred chHH--------HHHHHHHHHHhchHHhhhhHHHhccccccccccceeechhhHHhcCCCCCCCCCCCCccccchHHHHH
Confidence 2211 11222333333222211 011222334566678999988776 222111 1122255456
Q ss_pred HHhHHcCCCEEEee---eEEEecCC
Q 019818 283 YLCKRFGIPIIEIS---VNWSEIPG 304 (335)
Q Consensus 283 ~r~~~~G~~i~~~p---~~~~~~~~ 304 (335)
..+++.|+.+.-.+ =+|.|.|.
T Consensus 356 ALmRRaGW~v~ia~dL~GSyEE~Pp 380 (736)
T COG2943 356 ALMRRAGWGVWIAYDLDGSYEELPP 380 (736)
T ss_pred HHHhhcCceEEEeccCCCchhhCCc
Confidence 67788998887665 35555443
|
|
| >PLN02893 Cellulose synthase-like protein | Back alignment and domain information |
|---|
Probab=99.00 E-value=4.5e-08 Score=96.91 Aligned_cols=161 Identities=12% Similarity=-0.017 Sum_probs=95.8
Q ss_pred hHHHHHHHHHh----cCCCEEEEEeCCCCC-CcchHHHHHHHHHHhc-cccccCCCcccccccccccCCCeeeeecchhh
Q 019818 144 KGEAIRKGMLH----SRGELLLMLDADGAT-KVTDLEKLESQIHAVG-RKEYNHGDSVTVDSTFRISDIPIAAFGSRAHL 217 (335)
Q Consensus 144 k~~aln~g~~~----a~~d~v~~~DaD~~~-~~~~l~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~g~~~~~ 217 (335)
|++|+|.+++. +.|++|+.+|+|..+ +|+.+.+.+-.|.+.. +..+ ..|+-.....
T Consensus 282 KAGaLN~llrvS~~~TngpfIl~lDcD~y~n~p~~l~~amcff~Dp~~~~~v------------------afVQfPQ~F~ 343 (734)
T PLN02893 282 KAGALNTLLRVSATMTNAPIILTLDCDMYSNDPQTPLRALCYLLDPSMDPKL------------------GYVQFPQIFH 343 (734)
T ss_pred ccchHHHHHHhhcccCCCCEEEEecCCcCCCchhHHHHHHHHhcCCCcCCce------------------EEEeCccccc
Confidence 99999999996 679999999999996 6899999998886431 1111 3444322211
Q ss_pred hhHhhhhhhhhHHHHHHHHHHHHHHHhCCCCccCCCceeeeeHHHHHHhhh-----------------------------
Q 019818 218 EEKALATRKWYRNFLMKGFHLVVILTAGPGIRDTQCGFKMFTRAAARKLFT----------------------------- 268 (335)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~r~~l~~i~~----------------------------- 268 (335)
+ ......+.......+......+.+.......|..+++||+++.....
T Consensus 344 ~---i~~~D~y~~~~~vff~~~~~glDG~~gp~y~GTGc~~RR~al~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 420 (734)
T PLN02893 344 G---INKNDIYAGELKRLFQINMIGMDGLAGPNYVGTGCFFRRRVFYGGPSSLILPEIPELNPDHLVDKSIKSQEVLALA 420 (734)
T ss_pred C---CCcCCCCcchhHHHHHHHhhcccccCCceeeccceEEEHHHhcCCCccccchhhhhcccccccccccchHHHHHHh
Confidence 1 00111222222222332333333333333333344799999931100
Q ss_pred ------------------hhhhccccchHHHHHHhHHcCCCEEEeee---EE-EecCCC-cccccchHHHHHHHHHHHhh
Q 019818 269 ------------------NIRLKRWCFDVELVYLCKRFGIPIIEISV---NW-SEIPGS-KVNPLSIPNMLWELALMSVG 325 (335)
Q Consensus 269 ------------------~~~~~~~~~D~el~~r~~~~G~~i~~~p~---~~-~~~~~s-~~~~~~~~~~~~~~~~i~~~ 325 (335)
++.....+||....++++.+||+.+|++. .+ ..-|.+ .....|..||..+.+++.+.
T Consensus 421 ~~v~sC~ye~~t~WG~~~G~~ygsvtED~~Tg~~lh~~GWrSvY~~p~~~af~G~aP~~l~~~l~Q~~RWa~G~lqI~~s 500 (734)
T PLN02893 421 HHVAGCNYENQTNWGSKMGFRYGSLVEDYYTGYRLQCEGWKSIFCNPKRPAFLGDSPINLHDVLNQQKRWSVGLLEVAFS 500 (734)
T ss_pred hhccccccccCCccccccceEeccccccHHHHHHHHhcCCcEEecCCCchhhccCCCCCHHHHHHHHHHHHhhhHHHHhh
Confidence 01112237899999999999999999842 11 122332 22447888999999988764
|
|
| >PF13632 Glyco_trans_2_3: Glycosyl transferase family group 2 | Back alignment and domain information |
|---|
Probab=98.96 E-value=6e-09 Score=88.64 Aligned_cols=138 Identities=17% Similarity=0.102 Sum_probs=83.1
Q ss_pred EEEEEeCCCCCCcchHHHHHHHHHHhccccccCCCcccccccccccCCCeeeeecchhhhhHhh-hhhhhhHHHHHHHHH
Q 019818 159 LLLMLDADGATKVTDLEKLESQIHAVGRKEYNHGDSVTVDSTFRISDIPIAAFGSRAHLEEKAL-ATRKWYRNFLMKGFH 237 (335)
Q Consensus 159 ~v~~~DaD~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~g~~~~~~~~~~-~~~~~~~~~~~~~~~ 237 (335)
||+++|+|+.++++++.++++.++ +++. +++.|.....+.+.. ....-..........
T Consensus 1 ~v~~~DaDt~~~~d~l~~~~~~~~-~~~~--------------------~~vq~~~~~~~~~~~~~~~~~~~~~~~~~~~ 59 (193)
T PF13632_consen 1 YVLFLDADTRLPPDFLERLVAALE-DPKV--------------------DAVQGPIIFRNRGSLLTRLQDFEYAISHGLS 59 (193)
T ss_pred CEEEEcCCCCCChHHHHHHHHHHh-CCCc--------------------eEEEccEEecCCCChhheeehhhhhhhhhhh
Confidence 589999999999999999999997 4433 555555443211100 000001111111111
Q ss_pred HHHHHHhCCCCccCCCceeeeeHHHHHHhhhhhhhccccchHHHHHHhHHcCCCEEEeee--EEEecCCC-cccccchHH
Q 019818 238 LVVILTAGPGIRDTQCGFKMFTRAAARKLFTNIRLKRWCFDVELVYLCKRFGIPIIEISV--NWSEIPGS-KVNPLSIPN 314 (335)
Q Consensus 238 ~~~~~~~~~~~~~~~~g~~~~~r~~l~~i~~~~~~~~~~~D~el~~r~~~~G~~i~~~p~--~~~~~~~s-~~~~~~~~~ 314 (335)
.......+. .....|++.++|+++++++.+.......+||.+++.++.++|+++.++|- .+.+.|.+ +...+|..|
T Consensus 60 ~~~~~~~~~-~~~~~G~~~~~r~~~l~~vg~~~~~~~~~ED~~l~~~l~~~G~~~~~~~~~~~~~~~p~t~~~~~~Qr~R 138 (193)
T PF13632_consen 60 RLSQSSLGR-PLFLSGSGMLFRREALREVGGFDDPFSIGEDMDLGFRLRRAGYRIVYVPDAIVYTEAPPTFRAFIRQRRR 138 (193)
T ss_pred HHHHHhcCC-CccccCcceeeeHHHHHHhCcccccccccchHHHHHHHHHCCCEEEEecccceeeeCCCCHHHHHHHHHH
Confidence 112222222 22344566799999999993322346677899999999999999999993 45554544 223355556
Q ss_pred HHHH
Q 019818 315 MLWE 318 (335)
Q Consensus 315 ~~~~ 318 (335)
+..+
T Consensus 139 W~~g 142 (193)
T PF13632_consen 139 WARG 142 (193)
T ss_pred HHhh
Confidence 6555
|
|
| >cd02514 GT13_GLCNAC-TI GT13_GLCNAC-TI is involved in an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides | Back alignment and domain information |
|---|
Probab=98.93 E-value=4.9e-09 Score=95.81 Aligned_cols=108 Identities=18% Similarity=0.172 Sum_probs=82.5
Q ss_pred EEEEEeccCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCcchHHHHHHHHHHcCCCcEEEEEcCC----CCC
Q 019818 68 ISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGR----NHG 143 (335)
Q Consensus 68 vsViip~~ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~vi~~~~----~~G 143 (335)
+.|+|++||..+.+.++|++++++-. ...+++|+|.+||+.+++.+.++.... .++++..+. +.|
T Consensus 2 ~PVlv~ayNRp~~l~r~LesLl~~~p------~~~~~~liIs~DG~~~~~~~~v~~~~~-----~i~~i~~~~~~~~~~~ 70 (334)
T cd02514 2 IPVLVIACNRPDYLRRMLDSLLSYRP------SAEKFPIIVSQDGGYEEVADVAKSFGD-----GVTHIQHPPISIKNVN 70 (334)
T ss_pred cCEEEEecCCHHHHHHHHHHHHhccc------cCCCceEEEEeCCCchHHHHHHHhhcc-----ccEEEEcccccccccC
Confidence 57999999999999999999998410 456799999999999988888776631 456665432 211
Q ss_pred ----------hH----HHHHHHHHhcCCCEEEEEeCCCCCCcchH---HHHHHHHHHhcc
Q 019818 144 ----------KG----EAIRKGMLHSRGELLLMLDADGATKVTDL---EKLESQIHAVGR 186 (335)
Q Consensus 144 ----------k~----~aln~g~~~a~~d~v~~~DaD~~~~~~~l---~~l~~~~~~~~~ 186 (335)
-+ .|+|.++....++.++++++|+.+.|+++ ..+++.+++++.
T Consensus 71 ~~~~~~~y~~ia~hyk~aln~vF~~~~~~~vIILEDDl~~sPdFf~yf~~~l~~y~~D~~ 130 (334)
T cd02514 71 PPHKFQGYYRIARHYKWALTQTFNLFGYSFVIILEDDLDIAPDFFSYFQATLPLLEEDPS 130 (334)
T ss_pred cccccchhhHHHHHHHHHHHHHHHhcCCCEEEEECCCCccCHhHHHHHHHHHHHHhcCCC
Confidence 12 38999998888999999999999999965 566666665543
|
Alpha-1,3-mannosyl-glycoprotein beta-1,2-N-acetylglucosaminyltransferase (GLCNAC-T I , GNT-I) transfers N-acetyl-D-glucosamine from UDP to high-mannose glycoprotein N-oligosaccharide, an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. The enzyme is an integral membrane protein localized to the Golgi apparatus. The catalytic domain is located at the C-terminus. These proteins are members of the glycosy transferase family 13. |
| >PF03142 Chitin_synth_2: Chitin synthase; InterPro: IPR004835 Chitin synthase (2 | Back alignment and domain information |
|---|
Probab=98.88 E-value=3.7e-08 Score=94.88 Aligned_cols=214 Identities=17% Similarity=0.214 Sum_probs=133.9
Q ss_pred CceEEEEEeccCC-CCChHHHHHHHHHHHHHhhhcCCCCceEEEEEECC------CCcchHHHHHHHHHH----------
Q 019818 65 EKYISLIIPAFNE-EHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDG------SSDGTKRVAFDFVRK---------- 127 (335)
Q Consensus 65 ~~~vsViip~~ne-~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~------s~d~t~~~~~~~~~~---------- 127 (335)
.+.+-.+|||||| ++.|..+|+|+..+. ++..+-=|+||.|| .+..|.+++.++...
T Consensus 24 ~~~~i~~v~cy~E~~~~l~~tldsl~~~~------y~~~~k~~~vi~DG~i~g~g~~~~tp~~~l~~~~~~~~~~~~~~~ 97 (527)
T PF03142_consen 24 DKFVICLVPCYSEGEEELRTTLDSLATTD------YDDSRKLIFVICDGMIKGSGNDKTTPEIVLDILGDFVDPPEDPEP 97 (527)
T ss_pred CceEEEEEccccCChHHHHHHHHHHHhcC------CCCcccEEEEEcCcEEecCCCCCChHHHHHHhhcccCCCcCCCCC
Confidence 3457779999999 566777777776542 34445566667765 445578888775440
Q ss_pred ------------------------cCC-----------Cc-EEEEE----------cCCCCChHHHHHHHHHh-------
Q 019818 128 ------------------------YTV-----------DN-VRIIL----------LGRNHGKGEAIRKGMLH------- 154 (335)
Q Consensus 128 ------------------------~~~-----------~~-i~vi~----------~~~~~Gk~~aln~g~~~------- 154 (335)
+.+ .. +.|+. .+.|+||.-.+-..+..
T Consensus 98 ~~~~~~~~g~~~~n~~~vy~g~y~~~~~~~~~~~~~~~vp~~~vvk~g~~~e~~~~k~~NrGKRDsq~~~~~fl~~~~~~ 177 (527)
T PF03142_consen 98 LSYVSLGEGSKQHNMAKVYSGFYEYDGDSHVPPEKQQRVPYIVVVKCGTPSERSSPKPGNRGKRDSQILLMSFLNKVHFN 177 (527)
T ss_pred cceEEeccCchhhcCEEEEEEEEecCCccccccccccccCEEEEEEcCChHHhcccccccCCchHHHHHHHHHHHHHhcC
Confidence 000 01 23333 36688877554222211
Q ss_pred ----------------------cCCCEEEEEeCCCCCCcchHHHHHHHHHHhccccccCCCcccccccccccCCCeeeee
Q 019818 155 ----------------------SRGELLLMLDADGATKVTDLEKLESQIHAVGRKEYNHGDSVTVDSTFRISDIPIAAFG 212 (335)
Q Consensus 155 ----------------------a~~d~v~~~DaD~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~g 212 (335)
...|+++.+|||+.+.|+.+.+|+..+.++++.+ .+.|
T Consensus 178 ~~~~~~~~e~~~~i~~~~g~~~~~~~~il~~DaDt~~~p~~~~~lv~~m~~d~~i~--------------------gvCG 237 (527)
T PF03142_consen 178 NPMTPLELELFHQIWNIIGVDPDFYEYILMVDADTKFDPDSVNRLVDAMERDPKIG--------------------GVCG 237 (527)
T ss_pred CCCchHHHHHHHHHHHHhccCccceEEEEEecCCceEcHHHHHHHHHHHcCCCCeE--------------------EEec
Confidence 1249999999999999999999999998766543 2333
Q ss_pred c-chh-hhhHhhhhhhhhHHHHHHHHHHHHHHHhCCCCccCCCceeeeeHHHHHH-------------hhh---------
Q 019818 213 S-RAH-LEEKALATRKWYRNFLMKGFHLVVILTAGPGIRDTQCGFKMFTRAAARK-------------LFT--------- 268 (335)
Q Consensus 213 ~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~r~~l~~-------------i~~--------- 268 (335)
. +.. ...+.......+....++.....+....| .+.-..|+|.+||-++++. ++.
T Consensus 238 ~t~i~n~~~s~~t~~Q~fEY~ish~l~Ka~Es~fG-~VtCLPGcfsmyR~~a~~~~~~~~~p~l~~~~i~~~Y~~~~~dt 316 (527)
T PF03142_consen 238 ETRIDNKGQSWWTMYQVFEYAISHHLQKAFESVFG-SVTCLPGCFSMYRISALMDGDGYWVPLLISPDIIEKYSENPVDT 316 (527)
T ss_pred eeEEcCCCCCHhhheeccchhHHHHHHHHHHHHhC-ceeecCCcceeeeeehhccccccccccccchHHHHHHhhccchH
Confidence 1 111 11122223333556666776667766666 5666677888998877664 100
Q ss_pred --hhhhccccchHHHHHHhHHc--CCCEEEee--eEEEecCCC
Q 019818 269 --NIRLKRWCFDVELVYLCKRF--GIPIIEIS--VNWSEIPGS 305 (335)
Q Consensus 269 --~~~~~~~~~D~el~~r~~~~--G~~i~~~p--~~~~~~~~s 305 (335)
.......+||-.++..+.+. +++..++| ..++..|.+
T Consensus 317 lh~~nl~~lGEDR~LttLlLk~~~~~k~~y~~~A~a~T~aP~t 359 (527)
T PF03142_consen 317 LHQKNLLDLGEDRWLTTLLLKQFPGYKTEYVPSAVAYTDAPET 359 (527)
T ss_pred HHHHhhhhcchhHHHHHHHHhhCCCceEEEcccccccccCCcc
Confidence 01123578899999988887 78999998 455555554
|
4.1.16 from EC), also known as chitin-UDP acetyl-glucosaminyl transferase, is a plasma membrane-bound protein which catalyses the conversion of UDP-N-acettyl-D-glucosamine and {(1,4)-(N-acetyl- beta-D-glucosaminyl)}(N) to UDP and {(1,4)-(N-acetyl-beta-D- glucosaminyl)}(N+1). It plays a major role in cell wall biogenesis. ; GO: 0016758 transferase activity, transferring hexosyl groups |
| >PF13712 Glyco_tranf_2_5: Glycosyltransferase like family; PDB: 2QGI_A 2NXV_B | Back alignment and domain information |
|---|
Probab=98.80 E-value=1.2e-08 Score=88.54 Aligned_cols=175 Identities=15% Similarity=0.150 Sum_probs=91.6
Q ss_pred EEEEEeccCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCcchHHHHHHHHHHcCCCcEEEEEcCCCCChHHH
Q 019818 68 ISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNHGKGEA 147 (335)
Q Consensus 68 vsViip~~ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~vi~~~~~~Gk~~a 147 (335)
||||+++ |.++.+.+|++++.+ +..++.|.|-+++ .....+.+.+
T Consensus 1 isiI~c~-n~~~~~~~~~~~i~~--------~~~~~~~~i~i~~--------------------------~~~~~s~~~~ 45 (217)
T PF13712_consen 1 ISIIICV-NDEELYEECLRSIKR--------LIGPPGELIEIDN--------------------------VRNAKSMAAA 45 (217)
T ss_dssp EEEEEEE-S-HHHHHHHHHHHHH--------TT--TEEEEEEE---------------------------SSS-S-TTTH
T ss_pred CEEEEEE-CCHHHHHHHHHHHHh--------hCCCCceEEEEec--------------------------cCCCcCHHHH
Confidence 4666655 555567777777766 3455666665554 3334678889
Q ss_pred HHHHHHhcCCCEEEEEeCCCCC-CcchHHHHHHHHHHhccccccCCCcccccccccccCCCeeeeecchhhhhHh-hhhh
Q 019818 148 IRKGMLHSRGELLLMLDADGAT-KVTDLEKLESQIHAVGRKEYNHGDSVTVDSTFRISDIPIAAFGSRAHLEEKA-LATR 225 (335)
Q Consensus 148 ln~g~~~a~~d~v~~~DaD~~~-~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~g~~~~~~~~~-~~~~ 225 (335)
+|.|++.|+++|+++++.|..+ +++++..+++.|++.++-++ .=|.|+........ ....
T Consensus 46 yN~a~~~a~~~ylvflHqDv~i~~~~~l~~il~~~~~~~~~G~------------------iGvaG~~~~~~~~~~w~~~ 107 (217)
T PF13712_consen 46 YNEAMEKAKAKYLVFLHQDVFIINENWLEDILEIFEEDPNIGM------------------IGVAGSKRLPPNGVWWESP 107 (217)
T ss_dssp HHHHGGG--SSEEEEEETTEE-SSHHHHHHHHHHHHH-TTEEE------------------EESEEEESS-S-TTS---E
T ss_pred HHHHHHhCCCCEEEEEeCCeEEcchhHHHHHHHHHhhCCCccE------------------EEeecCCcCCCCCcccccc
Confidence 9999999999999999999977 68999999999977666543 11223332221110 0000
Q ss_pred ------hhhHHH-HHHHHHHHHHH-------HhCCCCccCCCceeeeeHHHHHHhhhhhhhccc-cchHHHHHHhHHcCC
Q 019818 226 ------KWYRNF-LMKGFHLVVIL-------TAGPGIRDTQCGFKMFTRAAARKLFTNIRLKRW-CFDVELVYLCKRFGI 290 (335)
Q Consensus 226 ------~~~~~~-~~~~~~~~~~~-------~~~~~~~~~~~g~~~~~r~~l~~i~~~~~~~~~-~~D~el~~r~~~~G~ 290 (335)
..+... ........... ....++...-+.+.+.+++++ . +.+....+| .||.++|++++++|+
T Consensus 108 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~avDg~ll~~~~dv~-~-fde~~~~gfH~Ydvd~cl~~~~~G~ 185 (217)
T PF13712_consen 108 NKVGKVREYGRIMHGHGPNSAGEVRYGGPRNDPPEEVQAVDGLLLATQKDVP-R-FDEDLFTGFHFYDVDQCLEARRAGY 185 (217)
T ss_dssp EEEEETTEEEE----E-------------ES-SSEEEEEE-TTEEEEETTB-------SS--SSSSHHHHHHHHHHHTT-
T ss_pred cccccccccccccccccccccccccccccccCCceeEEEecceEEEEEcccC-C-CCccccCCcchHHHHHHHHHHHhCC
Confidence 000000 00000001000 112334445567889999988 1 222223455 569999999999999
Q ss_pred CEEEeee
Q 019818 291 PIIEISV 297 (335)
Q Consensus 291 ~i~~~p~ 297 (335)
++...|.
T Consensus 186 ~v~~~~~ 192 (217)
T PF13712_consen 186 RVVVPPP 192 (217)
T ss_dssp EEEE---
T ss_pred EEEecCc
Confidence 9966664
|
|
| >cd00899 b4GalT Beta-4-Galactosyltransferase is involved in the formation of the poly-N-acetyllactosamine core structures present in glycoproteins and glycosphingolipids | Back alignment and domain information |
|---|
Probab=98.24 E-value=1.3e-05 Score=68.77 Aligned_cols=150 Identities=17% Similarity=0.155 Sum_probs=100.7
Q ss_pred eEEEEEeccCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCcchHHHHHHHHHHcCCCcEEEEEcCCCCChHH
Q 019818 67 YISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNHGKGE 146 (335)
Q Consensus 67 ~vsViip~~ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~vi~~~~~~Gk~~ 146 (335)
+++||||-+|.++.|...+.-+...+.. ..-.+.|+|+..... ....++.
T Consensus 3 ~~aiivpyr~R~~~l~~~l~~~~~~L~r-----q~~~~~i~vi~Q~~~-------------------------~~FNR~~ 52 (219)
T cd00899 3 KVAIIVPFRNRFEHLLIFLPHLHPFLQR-----QQLDYRIFVIEQVGN-------------------------FRFNRAK 52 (219)
T ss_pred ceEEEEecCCHHHHHHHHHHHHHHHHHh-----cCCcEEEEEEEecCC-------------------------ccchhhh
Confidence 4999999999999999999888887775 345677777763110 1244677
Q ss_pred HHHHHHHhcC----CCEEEEEeCCCCCCcchHHHHHHHHHHhccccccCCCcccccccccccCCCeeeeecchhhhhHhh
Q 019818 147 AIRKGMLHSR----GELLLMLDADGATKVTDLEKLESQIHAVGRKEYNHGDSVTVDSTFRISDIPIAAFGSRAHLEEKAL 222 (335)
Q Consensus 147 aln~g~~~a~----~d~v~~~DaD~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~g~~~~~~~~~~ 222 (335)
.+|.|+..|. .+++++-|.|..+..+.+.. ...+.+. .+..+--.
T Consensus 53 llNvG~~~a~k~~~~dc~i~hDVDllP~~~~~~y---~~~~~p~---------------------H~s~~~~~------- 101 (219)
T cd00899 53 LLNVGFLEALKDGDWDCFIFHDVDLLPENDRNLY---GCEEGPR---------------------HLSVPLDK------- 101 (219)
T ss_pred hhhHHHHHHhhcCCccEEEEecccccccCccccc---cCCCCCe---------------------EEEEeecc-------
Confidence 8888887763 58899999999988877442 1111111 12211100
Q ss_pred hhhhhhHHHHHHHHHHHHHHHhCCCCccCCCceeeeeHHHHHHhhhh-hhhcccc-chHHHHHHhHHcCCCEEEee
Q 019818 223 ATRKWYRNFLMKGFHLVVILTAGPGIRDTQCGFKMFTRAAARKLFTN-IRLKRWC-FDVELVYLCKRFGIPIIEIS 296 (335)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~r~~l~~i~~~-~~~~~~~-~D~el~~r~~~~G~~i~~~p 296 (335)
.....+.....||..+++++.+.++.+. ....+|+ ||.||..|+..+|+++...+
T Consensus 102 -------------------~~~~lpy~~~~Gg~~~~~k~~f~~VNGf~n~f~GWGgEDdd~~~Rl~~~g~~~~r~~ 158 (219)
T cd00899 102 -------------------FHYKLPYKTYFGGVLALTREQFRKVNGFSNAYWGWGGEDDDLYNRIKAAGLKITRPS 158 (219)
T ss_pred -------------------cccccCcccccccceeeEHHHHHHhCCcCCcCccCCcchHHHHHHHHHCCCeEEecc
Confidence 0001122234667789999999999333 2334565 79999999999999998886
|
Beta-4-Galactosyltransferase transfers galactose from uridine diphosphogalactose to the terminal beta-N-acetylglucosamine residues, hereby forming the poly-N-acetyllactosamine core structures present in glycoproteins and glycosphingolipids. At least seven homologous beta-4-galactosyltransferase isoforms have been identified that use different types of glycoproteins and glycolipids as substrates. Of the seven identified members of the beta-1,4-galactosyltransferase subfamily (beta1,4-Gal-T1 to -T7), b1,4-Gal-T1 is most characterized (biochemically). It is a Golgi-resident type II membrane enzyme with a cytoplasmic domain, membrane spanning region, and a stem region and catalytic domain facing the lumen. |
| >PF09488 Osmo_MPGsynth: Mannosyl-3-phosphoglycerate synthase (osmo_MPGsynth); InterPro: IPR012812 This family consists of examples of mannosyl-3-phosphoglycerate synthase (MPGS), which together with mannosyl-3-phosphoglycerate phosphatase (MPGP), comprises a two-step pathway for mannosylglycerate biosynthesis | Back alignment and domain information |
|---|
Probab=98.05 E-value=0.00013 Score=65.99 Aligned_cols=172 Identities=17% Similarity=0.225 Sum_probs=91.6
Q ss_pred ceEEEEEeccCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCC---cch---HHHHHHHHHHcCCCcEEEEEcC
Q 019818 66 KYISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSS---DGT---KRVAFDFVRKYTVDNVRIILLG 139 (335)
Q Consensus 66 ~~vsViip~~ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~---d~t---~~~~~~~~~~~~~~~i~vi~~~ 139 (335)
.+++||||+.||. ..+|+.++.. .+.+.-||+|.|++. |.- .+.++.++..-. ..+.+++..
T Consensus 50 ~~maIVVP~KnE~---l~lleGVL~g--------IPh~C~IIvVSNS~r~~~d~f~~E~d~l~~f~~~t~-r~~~~vHQk 117 (381)
T PF09488_consen 50 SKMAIVVPCKNEK---LKLLEGVLSG--------IPHDCLIIVVSNSSREPVDRFKMEVDLLKHFCRLTR-RQIIIVHQK 117 (381)
T ss_dssp TTEEEEEEESS-----HHHHHHHHHC--------S-TTSEEEEEE---CSSSCHHHHHHHHHHHHHHHCT---EEEEETT
T ss_pred hCcEEEEECCCCc---hhhhhhhhhc--------CCCCCeEEEEECCCCCCccHHHHHHHHHHHHHHhhc-CceEEEecC
Confidence 3589999999999 7788888884 555889999999887 443 445555554322 256666664
Q ss_pred CC----------------------CChHHHHHHHHHhcC---CCEEEEEeCCCCCCcchHHHHHHHHHHhccccccCCCc
Q 019818 140 RN----------------------HGKGEAIRKGMLHSR---GELLLMLDADGATKVTDLEKLESQIHAVGRKEYNHGDS 194 (335)
Q Consensus 140 ~~----------------------~Gk~~aln~g~~~a~---~d~v~~~DaD~~~~~~~l~~l~~~~~~~~~~~~~~~~~ 194 (335)
.. .||+.++-.|+-.|+ .+||.|+|||...| +.+.+-+..+..+
T Consensus 118 Dp~lA~Af~~aGy~~il~~~g~VR~GKgEGMiiGillAk~~g~~YVGFvDADNyiP-GaV~EYvk~yAAG---------- 186 (381)
T PF09488_consen 118 DPGLAEAFKEAGYPEILDEDGLVRNGKGEGMIIGILLAKAPGKRYVGFVDADNYIP-GAVNEYVKDYAAG---------- 186 (381)
T ss_dssp -HHHHHHHHHTT--TTB-TTSSB-SSHHHHHHHHHHHHHHTT-SEEEE--TTBS-H-HHHHHHHHHHHHH----------
T ss_pred CHHHHHHHHHcCcHHHhCCCCceecCchHHHHHHHHHHHhcCCceEeEeeccCCCc-chHHHHHHHHHhh----------
Confidence 32 489999999988774 49999999999765 4555555555332
Q ss_pred ccccccccccCCCeeeeecchhhhhHhh------hhhhhhHHHHHHHHHHHHHHHhCCCCc---cCCCceeeeeHHHHHH
Q 019818 195 VTVDSTFRISDIPIAAFGSRAHLEEKAL------ATRKWYRNFLMKGFHLVVILTAGPGIR---DTQCGFKMFTRAAARK 265 (335)
Q Consensus 195 ~~~~~~~~~~~~~~~v~g~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~g~~~~~r~~l~~ 265 (335)
+..+.++...+--.+....+-. ..++......+...+.+++...+.... ...+|=.+++-+..+.
T Consensus 187 ------f~ms~spytMVRi~W~~KPKv~~~~lyF~kwGRvSeitN~~LN~L~s~~~gfet~ii~TgNAGEHAMTm~LA~~ 260 (381)
T PF09488_consen 187 ------FAMSESPYTMVRIHWRSKPKVVKGELYFKKWGRVSEITNRYLNRLISAITGFETEIIKTGNAGEHAMTMKLAEK 260 (381)
T ss_dssp ------HHC-SSSCEEEEEE------TT---HHHHHHHHHHHHHHHHHHHHHHHHHSS-------TT-SSEEEEHHHHTT
T ss_pred ------hcccCCCceEEEEEecCCCceecCcEEEeecccccHHHHHHHHHHhccccCCCCceEEccCchhhhhhHHHHHh
Confidence 3333344444443333222221 122233344455556666655554433 2334445666666554
Q ss_pred h
Q 019818 266 L 266 (335)
Q Consensus 266 i 266 (335)
+
T Consensus 261 l 261 (381)
T PF09488_consen 261 L 261 (381)
T ss_dssp S
T ss_pred C
Confidence 4
|
Mannosylglycerate is a compatible solute that tends to be restricted to extreme thermophiles of archaea and bacteria. Note that in Rhodothermus marinus (Rhodothermus obamensis), this pathway is one of two; the other is condensation of GDP-mannose with D-glycerate by mannosylglycerate synthase.; GO: 0050504 mannosyl-3-phosphoglycerate synthase activity, 0051479 mannosylglycerate biosynthetic process, 0005737 cytoplasm; PDB: 2WVM_A 2WVL_A 2WVK_A 2ZU7_B 2ZU9_B 2ZU8_A. |
| >PF13704 Glyco_tranf_2_4: Glycosyl transferase family 2 | Back alignment and domain information |
|---|
Probab=98.02 E-value=2.9e-05 Score=58.24 Aligned_cols=79 Identities=28% Similarity=0.270 Sum_probs=53.8
Q ss_pred cCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCcchHHHHHHHHHHcCCCcEEEEEcCCCCC---hHH-HHHH
Q 019818 75 FNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNHG---KGE-AIRK 150 (335)
Q Consensus 75 ~ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~vi~~~~~~G---k~~-aln~ 150 (335)
+||+..|++.|+-.++. .--+++|+||||+|+|.++++++ + .+.++....... ... .++.
T Consensus 1 rne~~~L~~wl~~~~~l----------G~d~i~i~d~~s~D~t~~~l~~~----~--~v~i~~~~~~~~~~~~~~~~~~~ 64 (97)
T PF13704_consen 1 RNEADYLPEWLAHHLAL----------GVDHIYIYDDGSTDGTREILRAL----P--GVGIIRWVDPYRDERRQRAWRNA 64 (97)
T ss_pred CChHHHHHHHHHHHHHc----------CCCEEEEEECCCCccHHHHHHhC----C--CcEEEEeCCCccchHHHHHHHHH
Confidence 58888888777766541 23479999999999999998776 3 466665543221 222 3333
Q ss_pred HHHh-cCCCEEEEEeCCCCC
Q 019818 151 GMLH-SRGELLLMLDADGAT 169 (335)
Q Consensus 151 g~~~-a~~d~v~~~DaD~~~ 169 (335)
..+. ..+++++++|+|-.+
T Consensus 65 ~~~~~~~~dWvl~~D~DEfl 84 (97)
T PF13704_consen 65 LIERAFDADWVLFLDADEFL 84 (97)
T ss_pred HHHhCCCCCEEEEEeeeEEE
Confidence 3333 367999999999865
|
|
| >PLN02189 cellulose synthase | Back alignment and domain information |
|---|
Probab=98.01 E-value=7.9e-05 Score=76.28 Aligned_cols=115 Identities=12% Similarity=0.089 Sum_probs=83.4
Q ss_pred CCCceEEEEEeccCCCCC----hHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCcchHHHHHHHHH------------
Q 019818 63 PAEKYISLIIPAFNEEHR----LPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVR------------ 126 (335)
Q Consensus 63 ~~~~~vsViip~~ne~~~----l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~------------ 126 (335)
...|.|.|.|++-+..+. ...|+-|+++. |+|..++-++|-|||.+.-|.+.+.+.++
T Consensus 328 ~~LP~vDvFV~TADP~kEPPl~t~NTVLSiLA~------DYP~eKlscYvSDDGgS~LTf~AL~EAa~FA~~WvPFCkK~ 401 (1040)
T PLN02189 328 NMLSPVDIFVSTVDPLKEPPLVTANTVLSILAM------DYPVDKISCYVSDDGASMLTFEALSETAEFARKWVPFCKKF 401 (1040)
T ss_pred ccCCceeeEeccCCcccCcchHHHHHHHHHHhh------cccccceeEEEecCCchHHHHHHHHHHHHHHHhhccccccc
Confidence 357889999999665432 33455555553 56888999999999999888877766432
Q ss_pred ----------------------------------------------------HcCC------------------------
Q 019818 127 ----------------------------------------------------KYTV------------------------ 130 (335)
Q Consensus 127 ----------------------------------------------------~~~~------------------------ 130 (335)
+.|+
T Consensus 402 ~IepRaPe~YFs~~~~~~~~~~~~~F~~e~~~~K~eYEe~kvRI~~l~a~~~~~p~~~~~m~dGt~W~g~~~~dHp~IiQ 481 (1040)
T PLN02189 402 SIEPRAPEFYFSLKVDYLKDKVQPTFVKERRAMKREYEEFKVRINAIVAKAQKVPPEGWIMQDGTPWPGNNTRDHPGMIQ 481 (1040)
T ss_pred CCCcCCHHHHhccCCCcccccCCchHHHHHHHHHHHHHHHHHHHHHHHhhcCccCCccceeccCccCCCCCCCCCHHHHH
Confidence 0000
Q ss_pred ----------------CcEEEEEcCCCCC-----hHHHHHHHHHh----cCCCEEEEEeCCCCCC-cchHHHHHHHHHH
Q 019818 131 ----------------DNVRIILLGRNHG-----KGEAIRKGMLH----SRGELLLMLDADGATK-VTDLEKLESQIHA 183 (335)
Q Consensus 131 ----------------~~i~vi~~~~~~G-----k~~aln~g~~~----a~~d~v~~~DaD~~~~-~~~l~~l~~~~~~ 183 (335)
.++.++.+++++| |++|+|..++. +.+++|+.+|+|..+. +..+.+.+=.|.+
T Consensus 482 Vll~~~~~~d~~g~~lP~LVYVSREKrPg~~Hh~KAGAMNaLlRVSavmTNaPfILNLDCDmY~Nns~alr~AMCfflD 560 (1040)
T PLN02189 482 VFLGHSGGHDTEGNELPRLVYVSREKRPGFQHHKKAGAMNALIRVSAVLTNAPFMLNLDCDHYINNSKAVREAMCFLMD 560 (1040)
T ss_pred HHhcCCCCccccccccceeEEEeccCCCCCCcccchhhHHHHHHHhhhccCCCeEEEccCccccCchHHHHHhhhhhcC
Confidence 0145555555555 99999999955 5799999999999985 5889988888765
|
|
| >KOG2571 consensus Chitin synthase/hyaluronan synthase (glycosyltransferases) [Cell wall/membrane/envelope biogenesis] | Back alignment and domain information |
|---|
Probab=98.01 E-value=9.3e-05 Score=74.58 Aligned_cols=129 Identities=12% Similarity=0.040 Sum_probs=83.1
Q ss_pred HHHHHHhcCC--CEEEEEeCCCCCCcchHHHHHHHHHHhccccccCCCcccccccccccCCCeeeeecchhhhhHhhhhh
Q 019818 148 IRKGMLHSRG--ELLLMLDADGATKVTDLEKLESQIHAVGRKEYNHGDSVTVDSTFRISDIPIAAFGSRAHLEEKALATR 225 (335)
Q Consensus 148 ln~g~~~a~~--d~v~~~DaD~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~g~~~~~~~~~~~~~ 225 (335)
++........ ++|+++|+|+.+.|+++.+|++.|+.++..|.+.|...+.. ++.....
T Consensus 430 ~y~~~~~L~~~v~~il~vD~dT~~~P~ai~~lv~~f~~dp~VggaCG~I~~~~--------------------~~w~v~~ 489 (862)
T KOG2571|consen 430 MYTAFKALMPSVDYILVVDADTRLDPDALYHLVKVFDEDPQVGGACGRILNKG--------------------GSWVVAY 489 (862)
T ss_pred HHHHHHHhcCcceEEEEecCCCccCcHHHHHHHHHhccCcccceeccccccCC--------------------CceEEeH
Confidence 3444444433 78899999999999999999999998877765444321111 1111122
Q ss_pred hhhHHHHHHHHHHHHHHHhCCCCccCCCceeeeeHHHHHHhh-----hhh-------hhccccchHHHHHHhHHcCCCEE
Q 019818 226 KWYRNFLMKGFHLVVILTAGPGIRDTQCGFKMFTRAAARKLF-----TNI-------RLKRWCFDVELVYLCKRFGIPII 293 (335)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~r~~l~~i~-----~~~-------~~~~~~~D~el~~r~~~~G~~i~ 293 (335)
.-+...+++.........+| .+.-..|+|.+||-+++..-. +.. ....+++|-.||.++..+||+++
T Consensus 490 Q~FEY~Ish~l~Ka~ESvFG-~VsclPGcfs~yR~~aL~~~~~~~~y~~~~~~~~~~~~~~~geDR~L~~~llskgy~l~ 568 (862)
T KOG2571|consen 490 QNFEYAISHNLQKATESVFG-CVSCLPGCFSLYRASALMDQFVEYFYGEKFSGPRHGIQYSLGEDRWLCTLLLSKGYRLK 568 (862)
T ss_pred HHHHHHHHHHHHHhhhhhce-eEEecCchhHHHHHHHHhcchHHhhhchhhcCcccccccccchhHHHHHHHHhccceee
Confidence 33444444444444444444 344566778899997765432 111 11347789999999999999999
Q ss_pred Eeee
Q 019818 294 EISV 297 (335)
Q Consensus 294 ~~p~ 297 (335)
|++.
T Consensus 569 Y~a~ 572 (862)
T KOG2571|consen 569 YVAA 572 (862)
T ss_pred eecc
Confidence 9974
|
|
| >TIGR02460 osmo_MPGsynth mannosyl-3-phosphoglycerate synthase | Back alignment and domain information |
|---|
Probab=97.98 E-value=0.00046 Score=62.21 Aligned_cols=172 Identities=17% Similarity=0.205 Sum_probs=99.5
Q ss_pred ceEEEEEeccCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCcc------hHHHHHHHHHHcCCCcEEEEEcC
Q 019818 66 KYISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDG------TKRVAFDFVRKYTVDNVRIILLG 139 (335)
Q Consensus 66 ~~vsViip~~ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~------t~~~~~~~~~~~~~~~i~vi~~~ 139 (335)
..++||||+.||. ..+|+-++.. .+.+.-||+|.|++.++ -.+.++.++.-- ...+-+++..
T Consensus 50 ~~maIVVP~KdE~---l~lleGVL~g--------IPh~c~iIvVSNS~r~~~d~f~~E~d~~~~f~~~t-~r~~i~vHQk 117 (381)
T TIGR02460 50 GKTAIVVPVKNEK---LHLLEGVLSG--------IPHECPIIIVSNSKREPPDRFKMEVDLIRHFSNLT-HRKIIIIHQK 117 (381)
T ss_pred hCcEEEEEcCCCc---hhHHhhHhhc--------CCCCCeEEEEeCCCCCChhHHHHHHHHHHHHHHhh-cCceEEEEcC
Confidence 4689999999998 6677888874 55578999999987633 233444444321 1245555553
Q ss_pred CC----------------------CChHHHHHHHHHhcC---CCEEEEEeCCCCCCcchHHHHHHHHHHhccccccCCCc
Q 019818 140 RN----------------------HGKGEAIRKGMLHSR---GELLLMLDADGATKVTDLEKLESQIHAVGRKEYNHGDS 194 (335)
Q Consensus 140 ~~----------------------~Gk~~aln~g~~~a~---~d~v~~~DaD~~~~~~~l~~l~~~~~~~~~~~~~~~~~ 194 (335)
.. .||+.++-.|+-.|+ .+||.|+|||..+|- .+.+-+..+..+
T Consensus 118 Dp~la~Af~~~gy~~il~~~g~VR~GKgEGMiiG~lLAk~~g~~YVGFiDaDNyiPG-aV~EYvk~yAaG---------- 186 (381)
T TIGR02460 118 DPALAEAFKEVGYTSILGENGRVRSGKGEGMLLGLLLAKAIGAEYVGFVDADNYFPG-AVNEYVKIYAAG---------- 186 (381)
T ss_pred CHHHHHHHHHcCchhhhCCCCceecCcchHHHHHHHHHHHhCCceEeEeecccCCCc-hHHHHHHHHHhh----------
Confidence 22 478888888887774 499999999998764 444445544332
Q ss_pred ccccccccccCCCeeeee----cchhhhhHhh--hhhhhhHHHHHHHHHHHHHHHhCCCCc---cCCCceeeeeHHHHHH
Q 019818 195 VTVDSTFRISDIPIAAFG----SRAHLEEKAL--ATRKWYRNFLMKGFHLVVILTAGPGIR---DTQCGFKMFTRAAARK 265 (335)
Q Consensus 195 ~~~~~~~~~~~~~~~v~g----~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~g~~~~~r~~l~~ 265 (335)
+..+.++...+- +..+..++.+ ..++......++..+.+...+.+.... ...+|=.+++++.++.
T Consensus 187 ------f~ma~spy~MVRi~W~~KPKv~~~~lyF~~~GRVSElvnr~LN~l~~~~~gfet~ii~TGnAGEhAmt~~La~~ 260 (381)
T TIGR02460 187 ------FLMATSPYSMVRIHWRYKPKLTKGTLYFRKWGRVSEITNHYLNLLISEHTGFETDIIKTGNAGEHALTMKLAEI 260 (381)
T ss_pred ------hcccCCCCeeEEEEecCCCceecCeEEEcCCCchhHHHHHHHHHHHHhhccccCcceecccchhhhhhHHHHhh
Confidence 111111122111 1111111111 122333444445555555554443332 3355556899999988
Q ss_pred h
Q 019818 266 L 266 (335)
Q Consensus 266 i 266 (335)
+
T Consensus 261 l 261 (381)
T TIGR02460 261 L 261 (381)
T ss_pred C
Confidence 7
|
This family consists of examples of mannosyl-3-phosphoglycerate synthase (MPGS), which together mannosyl-3-phosphoglycerate phosphatase (MPGP) comprises a two-step pathway for mannosylglycerate biosynthesis. Mannosylglycerate is a compatible solute that tends to be restricted to extreme thermophiles of archaea and bacteria. Note that in Rhodothermus marinus, this pathway is one of two; the other is condensation of GDP-mannose with D-glycerate by mannosylglycerate synthase. |
| >PF05679 CHGN: Chondroitin N-acetylgalactosaminyltransferase; InterPro: IPR008428 This family represents Chondroitin N-acetylgalactosaminyltransferase | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.00041 Score=67.71 Aligned_cols=114 Identities=16% Similarity=0.178 Sum_probs=87.7
Q ss_pred CCCceEEEEEeccCC-CCChHHHHHHHHHHHHHhhhcCCCCceEEEEEECCC-Ccc-----hHHHHHHHHHHcCCCcEEE
Q 019818 63 PAEKYISLIIPAFNE-EHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGS-SDG-----TKRVAFDFVRKYTVDNVRI 135 (335)
Q Consensus 63 ~~~~~vsViip~~ne-~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s-~d~-----t~~~~~~~~~~~~~~~i~v 135 (335)
.....|.||||+.+. .+.+.+.|+...+.+.. +..+..++||..++ .|. ..+.++++.++++..++.+
T Consensus 244 ~~~~~V~iIvPl~~r~~~~~~~Fl~~~~~~~l~-----~~~~~~L~vV~~~~~~~~~~~~~ik~~l~~l~~k~~~~~i~~ 318 (499)
T PF05679_consen 244 TESTRVHIIVPLSGREADWFRRFLENFEKVCLE-----TDDNVFLTVVLFYDPSDSDSISQIKELLEELERKYPFSRIKW 318 (499)
T ss_pred cCCCEEEEEEEecCccHHHHHHHHHHHHHHhcc-----cCCceEEEEEEecCcccchhHHHHHHHHHHHHHhCCccceEE
Confidence 345789999999999 77777777777666543 45566666666554 222 2347788888888778999
Q ss_pred EEcC-CCCChHHHHHHHHHhcC-CCEEEEEeCCCCCCcchHHHHHHHH
Q 019818 136 ILLG-RNHGKGEAIRKGMLHSR-GELLLMLDADGATKVTDLEKLESQI 181 (335)
Q Consensus 136 i~~~-~~~Gk~~aln~g~~~a~-~d~v~~~DaD~~~~~~~l~~l~~~~ 181 (335)
+... .+..++.|+..|++... .++++++|.|..+++++|.+.-..-
T Consensus 319 i~~~~~~fsr~~~Ld~g~~~~~~d~L~f~~Dvd~~f~~~fL~rcR~nt 366 (499)
T PF05679_consen 319 ISVKTGEFSRGAALDVGAKKFPPDSLLFFCDVDMVFTSDFLNRCRMNT 366 (499)
T ss_pred EEecCCCccHHHHHHhhcccCCCCcEEEEEeCCcccCHHHHHHHHHhh
Confidence 9988 77889999999999764 5888999999999999998876544
|
Proteins have a type II transmembrane topology. The enzyme is involved in the biosynthetic initiation and elongation of chondroitin sulphate and is the key enzyme responsible for the selective chain assembly of chondroitin/dermatan sulphate on the linkage region tetrasaccharide common to various proteoglycans containing chondroitin/dermatan sulphate or heparin/heparan sulphate chains. ; GO: 0016758 transferase activity, transferring hexosyl groups, 0032580 Golgi cisterna membrane |
| >PRK14503 mannosyl-3-phosphoglycerate synthase; Provisional | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.0012 Score=60.02 Aligned_cols=103 Identities=17% Similarity=0.261 Sum_probs=70.5
Q ss_pred ceEEEEEeccCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCcc------hHHHHHHHHHHcCCCcEEEEEcC
Q 019818 66 KYISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDG------TKRVAFDFVRKYTVDNVRIILLG 139 (335)
Q Consensus 66 ~~vsViip~~ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~------t~~~~~~~~~~~~~~~i~vi~~~ 139 (335)
..++||||+.||. ..+|+-++.. .+.+.-||+|.|++.++ -.+.++.++.-- ...+-+++..
T Consensus 51 ~~mAIVVP~KdE~---l~lleGVL~g--------IPh~c~iIvVSNS~r~~~d~f~~E~dlv~~f~~~t-~r~~i~vHQk 118 (393)
T PRK14503 51 GRMAIVVPVKNER---LKLLEGVLKG--------IPHECPIIVVSNSKREPPDRFKLEVDLVRHFYRLT-QRPIIIVHQK 118 (393)
T ss_pred hCcEEEEEcCCCc---hhHHhhHhhc--------CCCCCeEEEEeCCCCCCchHHHHHHHHHHHHHhhh-cCceEEEEcC
Confidence 4689999999998 6778888874 55578999999976632 233444444321 1245555553
Q ss_pred CC----------------------CChHHHHHHHHHhcC---CCEEEEEeCCCCCCcchHHHHHHHH
Q 019818 140 RN----------------------HGKGEAIRKGMLHSR---GELLLMLDADGATKVTDLEKLESQI 181 (335)
Q Consensus 140 ~~----------------------~Gk~~aln~g~~~a~---~d~v~~~DaD~~~~~~~l~~l~~~~ 181 (335)
.. .||+.++-.|+-.|+ .+||.|+|||..+|- .+.+-+..+
T Consensus 119 Dp~la~Af~~aGyp~il~~~g~VR~GKgEGMiiG~lLAk~~g~~YVGFiDADNyiPG-aV~EYvk~y 184 (393)
T PRK14503 119 DPGLAEALKEAGYPYILDENGLVRSGKGEGMIIGLLLAKALGARYVGFVDADNYIPG-AVNEYVKIY 184 (393)
T ss_pred CHHHHHHHHHcCChhhhCCCCceecCcchHHHHHHHHHHHhCCCeEeEeecccCCCc-hHHHHHHHH
Confidence 22 478888888887774 499999999998764 444445444
|
|
| >COG4092 Predicted glycosyltransferase involved in capsule biosynthesis [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.0028 Score=55.23 Aligned_cols=109 Identities=17% Similarity=0.159 Sum_probs=71.6
Q ss_pred ceEEEEEeccCCCCChHHHHHHHHHHHH--HhhhcCCCCceEEEEEECCCCcchHHHHHHHHHHcCCCcEEEEEcCCCC-
Q 019818 66 KYISLIIPAFNEEHRLPGALDETLNYLQ--QRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNH- 142 (335)
Q Consensus 66 ~~vsViip~~ne~~~l~~~l~sl~~~~~--~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~vi~~~~~~- 142 (335)
+.++++||+-- .+.++.|-..+...+. .-+ ++....+||++++.+.-+ ..++.+....+ ++.++......
T Consensus 2 ~~~~~iiPv~~-S~e~p~~~~R~f~~~~~~k~f--ts~~~~~vi~~~~~~~~d--~~i~~~i~~~~--~~~yl~~~s~~~ 74 (346)
T COG4092 2 QPNGEIIPVAE-SEELPLTDSRQFSRTSAVKVF--TSSDITMVICLRAHEVMD--RLIRSYIDPMP--RVLYLDFGSPEP 74 (346)
T ss_pred CCcceEeecch-hhccchhHHHHHhhHhhhhhc--cccccEEEEEEecchhHH--HHHHHHhcccc--ceEEEecCCCcc
Confidence 34889999843 3445666555555221 111 567789999999876433 55666777777 77776654321
Q ss_pred --ChHHHHHHHHHhcC----CCEEEEEeCCCCCCcchHHHHHHHH
Q 019818 143 --GKGEAIRKGMLHSR----GELLLMLDADGATKVTDLEKLESQI 181 (335)
Q Consensus 143 --Gk~~aln~g~~~a~----~d~v~~~DaD~~~~~~~l~~l~~~~ 181 (335)
..+...|.|...+. +++|+++|+|+....|...+++.-.
T Consensus 75 F~s~~~c~n~ga~Ysh~~~~Sn~vlFlDvDc~~S~dnF~k~l~~~ 119 (346)
T COG4092 75 FASETICANNGADYSHEKCESNLVLFLDVDCFGSSDNFAKMLSIA 119 (346)
T ss_pred ccchhhhhhccchhhhccccccEEEEEeccccccHHHHHHHHHHH
Confidence 12445566666665 8999999999999977777776443
|
|
| >PLN02195 cellulose synthase A | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.00043 Score=70.65 Aligned_cols=56 Identities=7% Similarity=0.035 Sum_probs=41.8
Q ss_pred CCCceEEEEEeccCCCCC----hHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCcchHHHHHHH
Q 019818 63 PAEKYISLIIPAFNEEHR----LPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDF 124 (335)
Q Consensus 63 ~~~~~vsViip~~ne~~~----l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~ 124 (335)
...|.|.|.|++-+..+. ..+|+-|+++. |+|..++-++|-|||.+.-|.+.+.+.
T Consensus 249 s~LP~vDvFV~TADP~kEPPl~t~NTVLSiLA~------DYP~eKlscYvSDDGgS~LTf~AL~EA 308 (977)
T PLN02195 249 SQLAAVDFFVSTVDPLKEPPLITANTVLSILAV------DYPVDKVSCYVSDDGAAMLSFESLVET 308 (977)
T ss_pred ccCCceeeEeccCCcccCcchHHHHHHHHHHhh------cccccceEEEEecCCchHHHHHHHHHH
Confidence 458899999999665432 33455555554 568899999999999998888777664
|
|
| >PF03071 GNT-I: GNT-I family; InterPro: IPR004139 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.00039 Score=65.57 Aligned_cols=185 Identities=16% Similarity=0.104 Sum_probs=97.5
Q ss_pred CCCceEEEEEeccCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCcchHHHHHHHHHHcCCCcEEEEEcC---
Q 019818 63 PAEKYISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLG--- 139 (335)
Q Consensus 63 ~~~~~vsViip~~ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~vi~~~--- 139 (335)
...+.+-|+|-++|....+.+||+++++.-. ....+.|+|-.||+.+.+.+.++++... +..++.+
T Consensus 90 ~~~~~~pVlV~AcNRp~yl~r~L~sLl~~rp------~~~~fpIiVSQDg~~~~~~~vi~~y~~~-----v~~i~~~~~~ 158 (434)
T PF03071_consen 90 NKEPVIPVLVFACNRPDYLRRTLDSLLKYRP------SAEKFPIIVSQDGDDEEVAEVIKSYGDQ-----VTYIQHPDFS 158 (434)
T ss_dssp -------EEEEESS-TT-HHHHHHHHHHH-S-------TTTS-EEEEE-TT-HHHHHHHHGGGGG-----SEEEE-S--S
T ss_pred cCCCcceEEEEecCCcHHHHHHHHHHHHcCC------CCCCccEEEEecCCcHHHHHHHHHhhhh-----heeeecCCcC
Confidence 3466789999999999999999999998521 2346889999999999998888776432 3333322
Q ss_pred ------CC-C---------ChHHHHHHHHHhcCCCEEEEEeCCCCCCcchHHHHHHHHH--HhccccccCCCcccccccc
Q 019818 140 ------RN-H---------GKGEAIRKGMLHSRGELLLMLDADGATKVTDLEKLESQIH--AVGRKEYNHGDSVTVDSTF 201 (335)
Q Consensus 140 ------~~-~---------Gk~~aln~g~~~a~~d~v~~~DaD~~~~~~~l~~l~~~~~--~~~~~~~~~~~~~~~~~~~ 201 (335)
.. . ....|++..+..-..+.++++..|..+.||++.-+.+... +. +..+
T Consensus 159 ~i~~~~~~~~~~~y~~IA~HYk~aL~~vF~~~~~~~vIIlEDDL~isPDFf~Yf~~~~~ll~~-D~sl------------ 225 (434)
T PF03071_consen 159 PITIPPKEKKFKGYYKIARHYKWALSQVFNKFKYSSVIILEDDLEISPDFFEYFSATLPLLEN-DPSL------------ 225 (434)
T ss_dssp -----TT-GGGHHHHHHHHHHHHHHHHHHHTS--SEEEEEETTEEE-TTHHHHHHHHHHHHHH--TTE------------
T ss_pred CceeCcccccccchHHHHHHHHHHHHHHHHhcCCceEEEEecCcccCccHHHHHHHHHHHHhc-CCCe------------
Confidence 11 0 1223445555444578999999999999999987776653 22 1111
Q ss_pred cccCCCeeeeecchhhhhHhhhhhhhhHHHHHHHHHHHHHHHhCCCCccCCCceeeeeHHHHHHhhhhhhhccccchHHH
Q 019818 202 RISDIPIAAFGSRAHLEEKALATRKWYRNFLMKGFHLVVILTAGPGIRDTQCGFKMFTRAAARKLFTNIRLKRWCFDVEL 281 (335)
Q Consensus 202 ~~~~~~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~r~~l~~i~~~~~~~~~~~D~el 281 (335)
-+|-+-. .++.. ...... ....+.......+.| -|++|+..+++-+.|.... .|..|
T Consensus 226 ------~ciSawN--dnG~~--------~~~~~~---~~~~lyRsdffpglG--Wml~r~~w~el~~~Wp~~~--WDdwm 282 (434)
T PF03071_consen 226 ------WCISAWN--DNGKE--------HFVDDS---RPSLLYRSDFFPGLG--WMLTRELWDELEPKWPKAF--WDDWM 282 (434)
T ss_dssp ------EEEES----TT-BG--------GGS-TT----TT-EEEESS---SS--EEEEHHHHHHHGGG--SS---HHHHH
T ss_pred ------EEEEccc--cCCcc--------ccccCC---CccceEecccCCchH--HHhhHHHHHhhcccCCCCC--chhhh
Confidence 2332221 11100 000000 001122222333333 5899999999877776443 48888
Q ss_pred HHHhHHcCCCEEE
Q 019818 282 VYLCKRFGIPIIE 294 (335)
Q Consensus 282 ~~r~~~~G~~i~~ 294 (335)
-....++|-.+..
T Consensus 283 R~~~~rkgR~cIr 295 (434)
T PF03071_consen 283 RQPEQRKGRQCIR 295 (434)
T ss_dssp TSHHHHTT-EEEE
T ss_pred cCccccCCCceee
Confidence 8889999955554
|
These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Alpha-1,3-mannosyl-glycoprotein beta-1,2-N-acetylglucosaminyltransferase (GNT-I, GLCNAC-T I) 2.4.1.101 from EC transfers N-acetyl-D-glucosamine from UDP to high-mannose glycoprotein N-oligosaccharide. This is an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. The enzyme is an integral membrane protein localized to the Golgi apparatus, and is probably distributed in all tissues. The catalytic domain is located at the C terminus []. These proteins are members of the glycosyl transferase family 13 (GH13 from CAZY); GO: 0003827 alpha-1,3-mannosylglycoprotein 2-beta-N-acetylglucosaminyltransferase activity, 0006487 protein N-linked glycosylation, 0000139 Golgi membrane; PDB: 2APC_A 2AM4_A 1FO9_A 2AM3_A 1FOA_A 2AM5_A 1FO8_A. |
| >PLN02638 cellulose synthase A (UDP-forming), catalytic subunit | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.00073 Score=69.69 Aligned_cols=115 Identities=15% Similarity=0.112 Sum_probs=83.4
Q ss_pred CCCceEEEEEeccCCCCC----hHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCcchHHHHHHHHH------------
Q 019818 63 PAEKYISLIIPAFNEEHR----LPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVR------------ 126 (335)
Q Consensus 63 ~~~~~vsViip~~ne~~~----l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~------------ 126 (335)
...|.|.|.|++-+..+. ...|+-|+++. |+|..++-++|-|||.+.-|.+.+.+.++
T Consensus 346 s~LP~vDvFV~TADP~kEPPl~t~NTVLSiLA~------DYP~eKlscYvSDDGgS~LTf~AL~EAa~FA~~WvPFCkK~ 419 (1079)
T PLN02638 346 SQLAAVDIFVSTVDPLKEPPLVTANTVLSILAV------DYPVDKVSCYVSDDGAAMLTFEALSETSEFARKWVPFCKKY 419 (1079)
T ss_pred ccCCCccEEEeCCCCccCccHHHHHHHHHHHhh------cccccceeEEEecCCchHHHHHHHHHHHHHHHhhccccccc
Confidence 457889999999665433 33455555554 56888999999999999888877766432
Q ss_pred ----------------------------------------------------HcCC------------------------
Q 019818 127 ----------------------------------------------------KYTV------------------------ 130 (335)
Q Consensus 127 ----------------------------------------------------~~~~------------------------ 130 (335)
+.|+
T Consensus 420 ~IepRaPe~YFs~~~~~~~~~~~~~F~~e~~~mK~eYEe~k~RIe~l~a~~~~~p~~~~~m~dgt~W~g~~~~dHp~Iiq 499 (1079)
T PLN02638 420 NIEPRAPEWYFAQKIDYLKDKVQPSFVKDRRAMKREYEEFKVRINGLVAKAQKVPEEGWIMQDGTPWPGNNTRDHPGMIQ 499 (1079)
T ss_pred CCCcCCHHHHhccCCCcccccCCchHHHHHHHHHHHHHHHHHHHHHHHhhccccCCccccccCCccCCCCCCCCCHHHHH
Confidence 0000
Q ss_pred ----------------CcEEEEEcCCCCC-----hHHHHHHHHHhc----CCCEEEEEeCCCCCC-cchHHHHHHHHHH
Q 019818 131 ----------------DNVRIILLGRNHG-----KGEAIRKGMLHS----RGELLLMLDADGATK-VTDLEKLESQIHA 183 (335)
Q Consensus 131 ----------------~~i~vi~~~~~~G-----k~~aln~g~~~a----~~d~v~~~DaD~~~~-~~~l~~l~~~~~~ 183 (335)
.++.++.+++++| |++|+|..++.+ .+++|+.+|+|..+. |..+.+.+=.|-+
T Consensus 500 Vll~~~~~~d~~g~~lP~LVYVSREKRPg~~Hh~KAGAMNaLlRVSavmTNaPfILNLDCDmYiNns~alr~AMCf~lD 578 (1079)
T PLN02638 500 VFLGHSGGLDTEGNELPRLVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFLMD 578 (1079)
T ss_pred HHhcCCCccccccccccceEEEecccCCCCCcccccchHHHHHHHhhhccCCCeEeecccCcccCchHHHHHhhhhhcC
Confidence 0124455555555 999999999654 799999999999775 9999998888764
|
|
| >PRK14502 bifunctional mannosyl-3-phosphoglycerate synthase/mannosyl-3 phosphoglycerate phosphatase; Provisional | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.016 Score=57.85 Aligned_cols=103 Identities=16% Similarity=0.267 Sum_probs=70.4
Q ss_pred ceEEEEEeccCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCC---cc---hHHHHHHHHHHcCCCcEEEEEcC
Q 019818 66 KYISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSS---DG---TKRVAFDFVRKYTVDNVRIILLG 139 (335)
Q Consensus 66 ~~vsViip~~ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~---d~---t~~~~~~~~~~~~~~~i~vi~~~ 139 (335)
..++||||+.||. ..+|+-++.. .+.+.-||||.|++. |. -.+.++.++.-- ...+-+++..
T Consensus 55 ~~~aivvp~k~e~---~~~~~gvl~~--------ip~~c~ii~vsns~r~~~d~~~~e~~~~~~~~~~~-~~~~~~vhq~ 122 (694)
T PRK14502 55 KKMAIVLPIKDED---LKVFEGVLSG--------IPHDCLMIVISNSSKQEVDNFKNEKDIVNRFCRIT-HRQAIVVHQK 122 (694)
T ss_pred hCcEEEEEcCCCc---hhHHhhHhhc--------CCCCCeEEEEeCCCCCchHHHHHHHHHHHHHHHhh-cCceEEEEcC
Confidence 4689999999998 6778888874 555789999999775 32 233444444322 1245555543
Q ss_pred CC----------------------CChHHHHHHHHHhcC---CCEEEEEeCCCCCCcchHHHHHHHH
Q 019818 140 RN----------------------HGKGEAIRKGMLHSR---GELLLMLDADGATKVTDLEKLESQI 181 (335)
Q Consensus 140 ~~----------------------~Gk~~aln~g~~~a~---~d~v~~~DaD~~~~~~~l~~l~~~~ 181 (335)
.. .||+.++-.|+-.|+ .+||.|+|||..+|-. +.+-+..+
T Consensus 123 dp~~a~a~~~~g~~~~~~~~~~vr~gk~egm~~g~~la~~~g~~yvgfidadny~pg~-v~ey~~~y 188 (694)
T PRK14502 123 NPELANAIADAGYPELLGEDGLIRSGKAEGMILGIILTMFSGRDYVGFIDTDNYIPGA-VWEYAKHF 188 (694)
T ss_pred CHHHHHHHHHcCChhhhCCCCceecCcchHHHHHHHHHHhcCCceEeEeeccCCCCch-HHHHHHHH
Confidence 21 479999888887775 4999999999987754 44444444
|
|
| >PLN02190 cellulose synthase-like protein | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.003 Score=63.12 Aligned_cols=56 Identities=14% Similarity=0.086 Sum_probs=40.9
Q ss_pred CCceEEEEEeccC---CCCC-hHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCcchHHHHHHHH
Q 019818 64 AEKYISLIIPAFN---EEHR-LPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFV 125 (335)
Q Consensus 64 ~~~~vsViip~~n---e~~~-l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~ 125 (335)
..|.|.|.|+++| |+.. ..+|+.|+++. ++|..++-++|.|||...-|.+.+.+.+
T Consensus 91 ~Lp~VDvFV~TaDP~kEPpl~v~nTvLSilA~------dYP~eklscYvSDDG~s~LT~~al~EAa 150 (756)
T PLN02190 91 DLPSVDMFVPTADPVREPPIIVVNTVLSLLAV------NYPANKLACYVSDDGCSPLTYFSLKEAS 150 (756)
T ss_pred cCCcceEEEecCCCCcCCHHHHHHHHHHHHhc------cCCccccceEEecCCCcHhHHHHHHHHH
Confidence 4688999999999 5432 22333444432 5688899999999999998888776643
|
|
| >PF06306 CgtA: Beta-1,4-N-acetylgalactosaminyltransferase (CgtA); InterPro: IPR010446 This family consists of several beta-1,4-N-acetylgalactosaminyltransferase proteins from Campylobacter jejuni [] | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.0026 Score=56.90 Aligned_cols=100 Identities=20% Similarity=0.209 Sum_probs=74.9
Q ss_pred CceEEEEEeccCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCcchHHHHHHHHHHcCCCcEEEE-------E
Q 019818 65 EKYISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRII-------L 137 (335)
Q Consensus 65 ~~~vsViip~~ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~vi-------~ 137 (335)
+-..+-.|-+.||+.+|+++|+|++..++ |.++.=|.|+|+|.|++.++++++|. -+.+. .
T Consensus 86 pl~~~~~iRvKnE~~tl~~si~S~Lpai~-----------~gVI~yNdc~D~t~Eiil~fckkyP~-fip~~Ypy~v~~~ 153 (347)
T PF06306_consen 86 PLNPWAFIRVKNEAMTLAESIESILPAID-----------EGVIGYNDCTDGTEEIILEFCKKYPS-FIPIKYPYEVIIK 153 (347)
T ss_pred CCCcceEEEEcchhhhHHHHHHHHHHHHh-----------ccEEEeecCCCCHHHHHHHHHHhCcc-cccccCcchhhcc
Confidence 34578899999999999999999999765 67888888999999999999999994 22221 1
Q ss_pred cCCC--CChHHHHHHHHHhc-CCCEEEEEeCCCCCCcchHHH
Q 019818 138 LGRN--HGKGEAIRKGMLHS-RGELLLMLDADGATKVTDLEK 176 (335)
Q Consensus 138 ~~~~--~Gk~~aln~g~~~a-~~d~v~~~DaD~~~~~~~l~~ 176 (335)
.++. -....=.|.++... +.+|++=+|+|-..+++.|.+
T Consensus 154 n~~~~~n~l~~YYNy~ls~ipk~~w~iKID~DhIy~~~KL~k 195 (347)
T PF06306_consen 154 NPKSEENSLYNYYNYVLSFIPKNEWAIKIDADHIYDTKKLYK 195 (347)
T ss_pred CCchhhhhhhhhhhhhhcccccceEEEEeccceeecHHHHhh
Confidence 1110 01233346666654 579999999999999887644
|
|
| >PF03452 Anp1: Anp1; InterPro: IPR005109 The members of this family (Anp1, Van1 and Mnn9) are membrane proteins required for proper Golgi function | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.007 Score=53.64 Aligned_cols=111 Identities=18% Similarity=0.141 Sum_probs=76.5
Q ss_pred CCCCceEEEEEeccCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCC--cchHHHHHHHHHHc--------CCC
Q 019818 62 DPAEKYISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSS--DGTKRVAFDFVRKY--------TVD 131 (335)
Q Consensus 62 ~~~~~~vsViip~~ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~--d~t~~~~~~~~~~~--------~~~ 131 (335)
....++|-|+.|..|.+..+++.++.+.... +|...+.+-++.+.++ |.|.+.+++..++. +..
T Consensus 21 ~~~~e~VLILtplrna~~~l~~y~~~L~~L~------YP~~lIsLgfLv~d~~e~d~t~~~l~~~~~~~q~~~~~~~~F~ 94 (269)
T PF03452_consen 21 ARNKESVLILTPLRNAASFLPDYFDNLLSLT------YPHELISLGFLVSDSSEFDNTLKILEAALKKLQSHGPESKRFR 94 (269)
T ss_pred cccCCeEEEEEecCCchHHHHHHHHHHHhCC------CCchheEEEEEcCCCchhHHHHHHHHHHHHHHhccCcccCCcc
Confidence 3456789999999999988888887777652 4677788877777788 88988887554331 122
Q ss_pred cEEEEEcCCC---------C-----------ChHHHHHHHHHhc---CCCEEEEEeCCCCC-CcchHHHHH
Q 019818 132 NVRIILLGRN---------H-----------GKGEAIRKGMLHS---RGELLLMLDADGAT-KVTDLEKLE 178 (335)
Q Consensus 132 ~i~vi~~~~~---------~-----------Gk~~aln~g~~~a---~~d~v~~~DaD~~~-~~~~l~~l~ 178 (335)
.|+++..+-. + --+.|+|..+..+ ..+||+.+|+|..- +|+.|+.|+
T Consensus 95 ~itIl~~df~~~~~~~~~~RH~~~~Q~~RR~~mAraRN~LL~~aL~p~~swVlWlDaDIv~~P~~lI~dli 165 (269)
T PF03452_consen 95 SITILRKDFGQQLSQDRSERHAFEVQRPRRRAMARARNFLLSSALGPWHSWVLWLDADIVETPPTLIQDLI 165 (269)
T ss_pred eEEEEcCCCcccccCchhhccchhhHHHHHHHHHHHHHHHHHhhcCCcccEEEEEecCcccCChHHHHHHH
Confidence 6777665421 0 1345667766666 35999999999975 555555554
|
These proteins colocalize within the cis Golgi, where they are physically associated in two distinct complexes []. |
| >PLN02436 cellulose synthase A | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.0098 Score=61.56 Aligned_cols=56 Identities=9% Similarity=0.035 Sum_probs=41.6
Q ss_pred CCCceEEEEEeccCCCCC----hHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCcchHHHHHHH
Q 019818 63 PAEKYISLIIPAFNEEHR----LPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDF 124 (335)
Q Consensus 63 ~~~~~vsViip~~ne~~~----l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~ 124 (335)
...|.|.|.|++-+..+. ...|+-|+++. |+|..++-++|-|||.+.-|.+.+.+.
T Consensus 362 s~LP~vDvFV~TADP~kEPPl~t~NTVLSiLA~------DYP~eKlscYvSDDGgS~LTf~AL~EA 421 (1094)
T PLN02436 362 SELASVDVFVSTVDPMKEPPLITANTVLSILAV------DYPVDKVACYVSDDGAAMLTFEALSET 421 (1094)
T ss_pred ccCCceeeEeccCCcccCcchHHHHHHHHHHhh------cccccceEEEEecCCchHHHHHHHHHH
Confidence 458889999999665432 33555555554 568889999999999998887777654
|
|
| >KOG3588 consensus Chondroitin synthase 1 [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.011 Score=53.90 Aligned_cols=105 Identities=13% Similarity=0.140 Sum_probs=76.4
Q ss_pred CCceEEEEEeccCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEECCC-Ccch--HHHHHHHHHHcCCCcEEEEEcCC
Q 019818 64 AEKYISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGS-SDGT--KRVAFDFVRKYTVDNVRIILLGR 140 (335)
Q Consensus 64 ~~~~vsViip~~ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s-~d~t--~~~~~~~~~~~~~~~i~vi~~~~ 140 (335)
..|.|.+++|...+...+.....++.. .+..+.+++|+-=|+ .|+- .+....++.+++ ++.++....
T Consensus 227 ~~pgih~i~pl~gr~~~f~rf~q~~c~--------~~d~~l~l~vv~f~~se~e~ak~e~~tslra~f~--~~q~l~lng 296 (494)
T KOG3588|consen 227 EDPGIHMIMPLRGRAAIFARFAQSICA--------RGDDRLALSVVYFGYSEDEMAKRETITSLRASFI--PVQFLGLNG 296 (494)
T ss_pred cCCCceEEEeccchHHHhhhhhHHHhc--------cCCCceEEEEEEecCCChHHHhhhHHHHHhhcCC--ceEEecccc
Confidence 346699999999998888777775544 366678877765443 3332 344556777777 788887776
Q ss_pred CCChHHHHHHHHHhcCCC-EEEEEeCCCCCCcchHHHHH
Q 019818 141 NHGKGEAIRKGMLHSRGE-LLLMLDADGATKVTDLEKLE 178 (335)
Q Consensus 141 ~~Gk~~aln~g~~~a~~d-~v~~~DaD~~~~~~~l~~l~ 178 (335)
...++.||..|.+.-..+ .+.|+|.|.....++|.+.-
T Consensus 297 eFSRa~aL~vGAe~~~~nvLLFfcDVDi~FT~efL~rcr 335 (494)
T KOG3588|consen 297 EFSRAKALMVGAETLNANVLLFFCDVDIYFTTEFLNRCR 335 (494)
T ss_pred hhhhhHHHHhhHHHhccceeEEEeccceeehHHHHHHHh
Confidence 677899999999998654 55567999998888877654
|
|
| >KOG3916 consensus UDP-Gal:glucosylceramide beta-1,4-galactosyltransferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.032 Score=50.47 Aligned_cols=154 Identities=18% Similarity=0.214 Sum_probs=98.1
Q ss_pred CCCceEEEEEeccCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCcchHHHHHHHHHHcCCCcEEEEEcCCCC
Q 019818 63 PAEKYISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNH 142 (335)
Q Consensus 63 ~~~~~vsViip~~ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~vi~~~~~~ 142 (335)
...-+|+||||-+|.++.|.-.|.-+...+.+ ..-.|.|+||.-...+ ..
T Consensus 148 ~ar~kvAIIIPfR~Re~HL~~~l~~LhP~Lqr-----QrL~y~iyVieQ~g~~-------------------------~F 197 (372)
T KOG3916|consen 148 QARHKVAIIIPFRNREEHLRYLLHHLHPFLQR-----QRLDYRIYVIEQAGNK-------------------------PF 197 (372)
T ss_pred CccceeEEEeecccHHHHHHHHHHHhhHHHHh-----hhhceeEEEEEecCCC-------------------------cc
Confidence 34568999999999999999988888877664 3446777777642221 23
Q ss_pred ChHHHHHHHHHhcC----CCEEEEEeCCCCCCcchHHHHHHHHHHhccccccCCCcccccccccccCCCeeeeecchhhh
Q 019818 143 GKGEAIRKGMLHSR----GELLLMLDADGATKVTDLEKLESQIHAVGRKEYNHGDSVTVDSTFRISDIPIAAFGSRAHLE 218 (335)
Q Consensus 143 Gk~~aln~g~~~a~----~d~v~~~DaD~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~g~~~~~~ 218 (335)
.++.-+|.|+..|. -|-++|-|.|..+..| ...| .|--+.|-
T Consensus 198 NRakL~NVGf~eAlkd~~wdCfIFHDVDllPenD-------------rNlY------------------~C~~~PRH--- 243 (372)
T KOG3916|consen 198 NRAKLLNVGFLEALKDYGWDCFIFHDVDLLPEND-------------RNLY------------------GCPEQPRH--- 243 (372)
T ss_pred cHHHhhhhHHHHHHHhcCCCEEEEecccccccCC-------------CCcc------------------CCCCCCcc---
Confidence 36667788887773 3778888999876543 1111 11111110
Q ss_pred hHhhhhhhhhHHHHHHHHHHHHHHHhCCCCccCCCceeeeeHHHHHHhhhhh-hhccc-cchHHHHHHhHHcCCCEEEee
Q 019818 219 EKALATRKWYRNFLMKGFHLVVILTAGPGIRDTQCGFKMFTRAAARKLFTNI-RLKRW-CFDVELVYLCKRFGIPIIEIS 296 (335)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~r~~l~~i~~~~-~~~~~-~~D~el~~r~~~~G~~i~~~p 296 (335)
+...+.......+....-||-.+++++-+.++.+.. ...+| +||-||..|+..+|++|..-|
T Consensus 244 ----------------~sva~dk~gy~LPY~~~FGGVsalt~~qf~kINGFsN~fWGWGGEDDDl~nRv~~ag~~IsRp~ 307 (372)
T KOG3916|consen 244 ----------------MSVALDKFGYRLPYKEYFGGVSALTKEQFRKINGFSNAFWGWGGEDDDLWNRVQLAGMKISRPP 307 (372)
T ss_pred ----------------hhhhhhhccccccchhhhCchhhccHHHHHHhcCCCchhcccCCcchHHHHHHHhcCceeecCC
Confidence 000111222233444456777789999999993222 12223 469999999999999998665
|
|
| >PLN02400 cellulose synthase | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.011 Score=61.47 Aligned_cols=56 Identities=11% Similarity=0.030 Sum_probs=41.7
Q ss_pred CCCceEEEEEeccCCCCC----hHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCcchHHHHHHH
Q 019818 63 PAEKYISLIIPAFNEEHR----LPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDF 124 (335)
Q Consensus 63 ~~~~~vsViip~~ne~~~----l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~ 124 (335)
...|.|.|.|++-+..+. ...|+-|+++. |+|..++-++|-|||.+.-|.+.+.+.
T Consensus 353 s~LP~vDvFV~TADP~kEPPl~t~NTVLSiLA~------DYP~eKlscYvSDDGgS~LTf~Al~Ea 412 (1085)
T PLN02400 353 SQLAPVDVFVSTVDPLKEPPLVTANTVLSILAV------DYPVDKVSCYVSDDGSAMLTFEALSET 412 (1085)
T ss_pred ccCCceeeEeccCCcccCcchHHHHHHHHHHhh------cccccceEEEEecCCchHHHHHHHHHH
Confidence 458889999999665432 33455555553 568999999999999998888777664
|
|
| >PF11316 Rhamno_transf: Putative rhamnosyl transferase ; InterPro: IPR021466 This bacterial family of proteins has no known function | Back alignment and domain information |
|---|
Probab=96.49 E-value=0.027 Score=49.35 Aligned_cols=81 Identities=16% Similarity=0.263 Sum_probs=60.0
Q ss_pred CCCCceEEEEEE-CCCCcchHHHHHHHHHHcCCCcEEEEEcCCCCChHHHHHHHHHhc---CCCEEEEE--eCCCCCCcc
Q 019818 99 DKSFTYEVLIID-DGSSDGTKRVAFDFVRKYTVDNVRIILLGRNHGKGEAIRKGMLHS---RGELLLML--DADGATKVT 172 (335)
Q Consensus 99 ~~~~~~eiivvd-d~s~d~t~~~~~~~~~~~~~~~i~vi~~~~~~Gk~~aln~g~~~a---~~d~v~~~--DaD~~~~~~ 172 (335)
|+..++..+|+- +.+.+.-.+.++++.+.+| +++++..++. ....++..++..+ .+++++.+ |+|+.++.+
T Consensus 54 QTd~dF~~lv~~~~~~P~~~~~rL~~l~~~~p--~~~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~RLDdDDAl~~d 130 (234)
T PF11316_consen 54 QTDQDFTWLVLFDDDLPEPYRERLRDLLADYP--QFRIVFRPPG-PHRDAMRRAINAARRDGADPVLQFRLDDDDALHRD 130 (234)
T ss_pred ccCCCeEEEEEECCCCCHHHHHHHHHHhccCC--CcEEEecCCc-hHHHHHHHHHhhhccCCCCEEEEEEECCcchhhHH
Confidence 677899998854 4455556778999988888 7777776643 2556666666433 34666665 999999999
Q ss_pred hHHHHHHHHH
Q 019818 173 DLEKLESQIH 182 (335)
Q Consensus 173 ~l~~l~~~~~ 182 (335)
+++++-+...
T Consensus 131 FV~rlr~~a~ 140 (234)
T PF11316_consen 131 FVARLRRAAA 140 (234)
T ss_pred HHHHHHHHHH
Confidence 9999998875
|
|
| >PLN02915 cellulose synthase A [UDP-forming], catalytic subunit | Back alignment and domain information |
|---|
Probab=96.32 E-value=0.018 Score=59.60 Aligned_cols=56 Identities=9% Similarity=-0.008 Sum_probs=41.9
Q ss_pred CCCceEEEEEeccCCCCC----hHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCcchHHHHHHH
Q 019818 63 PAEKYISLIIPAFNEEHR----LPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDF 124 (335)
Q Consensus 63 ~~~~~vsViip~~ne~~~----l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~ 124 (335)
...|.|.|.|++-+..+. ...|+-|+++. |+|..++-++|-|||.+.-|.+.+.+.
T Consensus 284 ~~LP~vDvFV~TADP~kEPPl~t~NTVLSiLA~------DYP~eKlscYvSDDGgS~LTf~AL~EA 343 (1044)
T PLN02915 284 NRLAPVDVFVSTVDPLKEPPIITANTVLSILAV------DYPVDKVSCYVSDDGASMLLFDTLSET 343 (1044)
T ss_pred ccCCceeeEeccCCcccCcchHHHHHHHHHHhh------cccccceeEEEecCCchHhHHHHHHHH
Confidence 358889999998665432 33455555554 568889999999999998888877664
|
|
| >PF11735 CAP59_mtransfer: Cryptococcal mannosyltransferase 1 ; InterPro: IPR021047 The capsule of pathogenic fungi is a complex polysaccharide whose formation is determined by a number of enzymes including, most importantly, alpha-1,3-mannosyltransferase 1 [, ] | Back alignment and domain information |
|---|
Probab=95.58 E-value=0.35 Score=42.51 Aligned_cols=108 Identities=22% Similarity=0.175 Sum_probs=73.8
Q ss_pred EEEEeccCCCCChHHHHH-HHHHHHHHhhhcCCCCceEEEEEECCCCcchHHHHHHHHHHcCCCcE--EEEEcCCCCC--
Q 019818 69 SLIIPAFNEEHRLPGALD-ETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNV--RIILLGRNHG-- 143 (335)
Q Consensus 69 sViip~~ne~~~l~~~l~-sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i--~vi~~~~~~G-- 143 (335)
=|-.-.||.++.|+.... ++++....+ .+.+.-|-|+++||.|+|.+.++.+.......+| .+...+....
T Consensus 3 fIA~~l~~~~~iL~~~~~~~ll~li~~L----Gp~nv~vSIyE~~S~D~T~~~L~~L~~~L~~lgv~~~i~~~~~~~~~~ 78 (241)
T PF11735_consen 3 FIAANLYNNEDILPSLWGDALLELIRFL----GPENVFVSIYESGSWDGTKEALRALDAELDALGVPHSIVLSDITHRDE 78 (241)
T ss_pred EEEEEcccCHhHHHHHHHHHHHHHHHHh----CcCeEEEEEEeCCCCccHHHHHHHHHHHHHhCCCCeEEEeCCCccccc
Confidence 344456888899998887 888887776 3457888899999999999999998844332222 2222111110
Q ss_pred ------------hHHHHHHHHHhc---------CCCEEEEEeCCCCCCcchHHHHHHHH
Q 019818 144 ------------KGEAIRKGMLHS---------RGELLLMLDADGATKVTDLEKLESQI 181 (335)
Q Consensus 144 ------------k~~aln~g~~~a---------~~d~v~~~DaD~~~~~~~l~~l~~~~ 181 (335)
.+.-+|.|++-- ..+.|++++ |....++.+.+|+..-
T Consensus 79 ~~~~~~~~RI~~LA~lRN~ALePL~~~~~~~~~~fd~VlfLN-DV~f~~~Dil~LL~~~ 136 (241)
T PF11735_consen 79 IERPPRLRRIEYLAELRNRALEPLYDLARKRGRRFDKVLFLN-DVFFCPEDILELLFTR 136 (241)
T ss_pred ccccchhhhHHHHHHHHhHHHHHHHhhhhccCCCcCEEEEec-CcccCHHHHHHHHhhc
Confidence 245677777532 237899998 8888888887877654
|
It is responsible for addition of mannose residues in an alpha-1,3 linkage to a polymannosly precursor. |
| >PF03552 Cellulose_synt: Cellulose synthase; InterPro: IPR005150 Cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues, is the major component of wood and thus paper, and is synthesized by plants, most algae, some bacteria and fungi, and even some animals | Back alignment and domain information |
|---|
Probab=95.31 E-value=0.039 Score=55.22 Aligned_cols=51 Identities=18% Similarity=0.160 Sum_probs=38.6
Q ss_pred EEEEEcCCCCC-----hHHHHHHHHHhc----CCCEEEEEeCCCC-CCcchHHHHHHHHHH
Q 019818 133 VRIILLGRNHG-----KGEAIRKGMLHS----RGELLLMLDADGA-TKVTDLEKLESQIHA 183 (335)
Q Consensus 133 i~vi~~~~~~G-----k~~aln~g~~~a----~~d~v~~~DaD~~-~~~~~l~~l~~~~~~ 183 (335)
+.++.+++++| |++|+|.-++.+ .+++|+.+|+|.. -+|..+.+.+=.|-+
T Consensus 168 lvYvsREKrp~~~Hh~KAGAmNaL~RvSa~~tN~p~iLnlDcD~y~nn~~~~~~amc~~~d 228 (720)
T PF03552_consen 168 LVYVSREKRPGYPHHFKAGAMNALLRVSAVMTNAPFILNLDCDMYINNSQALREAMCFFMD 228 (720)
T ss_pred EEEEeccCCCCCCchhhhcccccccccceeecCCCEEEEecccccccchHHHHHHHHhhcc
Confidence 44455555555 999999998764 6899999999995 478888887777654
|
The genes that synthesize cellulose in higher plants differ greatly from the well-characterised genes found in Acetobacter and Agrobacterium spp. More correctly designated as "cellulose synthase catalytic subunits", plant cellulose synthase (CesA) proteins are integral membrane proteins, approximately 1,000 amino acids in length. There are a number of highly conserved residues, including several motifs shown to be necessary for processive glycosyltransferase activity [].; GO: 0016760 cellulose synthase (UDP-forming) activity, 0030244 cellulose biosynthetic process, 0016020 membrane |
| >PF09258 Glyco_transf_64: Glycosyl transferase family 64 domain; InterPro: IPR015338 Members of this entry catalyse the transfer reaction of N-acetylglucosamine and N-acetylgalactosamine from the respective UDP-sugars to the non-reducing end of [glucuronic acid]beta 1-3[galactose]beta 1-O-naphthalenemethanol, an acceptor substrate analogue of the natural common linker of various glycosylaminoglycans | Back alignment and domain information |
|---|
Probab=95.11 E-value=0.025 Score=50.09 Aligned_cols=105 Identities=12% Similarity=0.085 Sum_probs=61.9
Q ss_pred EEEEEec-cCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCcchHHHHHHHHHHcCCCcEEEEEcCCCCChHH
Q 019818 68 ISLIIPA-FNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNHGKGE 146 (335)
Q Consensus 68 vsViip~-~ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~vi~~~~~~Gk~~ 146 (335)
+||+|.+ |+..+.|.++|+.+.+ ...--||+||=++....-.. ....... ..|+++..+.|. -.
T Consensus 1 fTvvi~t~~~R~~~L~~~l~~l~~---------~~~l~~IvVvWn~~~~~P~~--~~~~~~~--vpV~~~~~~~ns--Ln 65 (247)
T PF09258_consen 1 FTVVINTSYKRSDLLKRLLRHLAS---------SPSLRKIVVVWNNPNPPPPS--SKWPSTG--VPVRVVRSSRNS--LN 65 (247)
T ss_dssp EEEEEEE-SS-HHHHHHHHHHHTT---------STTEEEEEEEEE-TS--THH--HHHT-----S-EEEEEESSHH--GG
T ss_pred CEEEEEecccchHHHHHHHHHHHc---------CCCCCeEEEEeCCCCCCCcc--cccCCCC--ceEEEEecCCcc--HH
Confidence 5889999 8887777777766633 34457788876652222111 1221111 268888765431 11
Q ss_pred HHHHHHHhcCCCEEEEEeCCCCCCcchHHHHHHHHHHhccc
Q 019818 147 AIRKGMLHSRGELLLMLDADGATKVTDLEKLESQIHAVGRK 187 (335)
Q Consensus 147 aln~g~~~a~~d~v~~~DaD~~~~~~~l~~l~~~~~~~~~~ 187 (335)
++-.-....+++.|+.+|+|..++.+.|+...+..++.++.
T Consensus 66 nRF~p~~~i~T~AVl~~DDDv~~~~~~l~faF~~W~~~pdr 106 (247)
T PF09258_consen 66 NRFLPDPEIETDAVLSLDDDVMLSCDELEFAFQVWREFPDR 106 (247)
T ss_dssp GGGS--TT--SSEEEEEETTEEE-HHHHHHHHHHHCCSTTS
T ss_pred hcCcCccccCcceEEEecCCcccCHHHHHHHHHHHHhChhh
Confidence 22222345678999999999999999999999999877653
|
They are also required for the biosynthesis of heparan-sulphate []. ; GO: 0016758 transferase activity, transferring hexosyl groups, 0031227 intrinsic to endoplasmic reticulum membrane; PDB: 1ON6_B 1OMZ_B 1OMX_B 1ON8_B. |
| >PF13733 Glyco_transf_7N: N-terminal region of glycosyl transferase group 7; PDB: 2AGD_B 3EE5_A 2AE7_B 2AEC_A 2FYA_A 2AES_B 2AH9_A 2FYB_A 2FY7_A 3LW6_A | Back alignment and domain information |
|---|
Probab=95.09 E-value=0.089 Score=41.53 Aligned_cols=78 Identities=21% Similarity=0.393 Sum_probs=53.0
Q ss_pred CceEEEEEeccCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCcchHHHHHHHHHHcCCCcEEEEEcCCCCCh
Q 019818 65 EKYISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNHGK 144 (335)
Q Consensus 65 ~~~vsViip~~ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~vi~~~~~~Gk 144 (335)
.-+++||||-+|.++.|...|.-+...+.. ....+.|+||.-..+ . ...+
T Consensus 46 ~~kvAiIIPyRdR~~hL~~fl~~l~~~L~r-----Q~~~y~I~vieQ~~~-~------------------------~FNR 95 (136)
T PF13733_consen 46 RHKVAIIIPYRDREEHLRIFLPHLHPFLQR-----QQLDYRIFVIEQVDN-G------------------------PFNR 95 (136)
T ss_dssp S-EEEEEEEESS-HHHHHHHHHHHHHHHHH-----TT-EEEEEEEEE-SS-S---------------------------H
T ss_pred ccceEEEEEeCCHHHHHHHHHHHHHHHHhh-----CcceEEEEEEeeccC-C------------------------CCch
Confidence 458999999999999999988888877765 234788888875321 1 2346
Q ss_pred HHHHHHHHHhc----CCCEEEEEeCCCCCCcc
Q 019818 145 GEAIRKGMLHS----RGELLLMLDADGATKVT 172 (335)
Q Consensus 145 ~~aln~g~~~a----~~d~v~~~DaD~~~~~~ 172 (335)
+.-+|.|+..| ..|.++|=|.|..+..+
T Consensus 96 g~L~NvGf~eA~~~~~~dc~ifHDVDllP~~~ 127 (136)
T PF13733_consen 96 GKLMNVGFLEALKDDDFDCFIFHDVDLLPEND 127 (136)
T ss_dssp HHHHHHHHHHHHHHS--SEEEEE-TTEEESBT
T ss_pred hhhhhHHHHHHhhccCCCEEEEecccccccCC
Confidence 66778888776 35899999999876544
|
... |
| >PF01762 Galactosyl_T: Galactosyltransferase; InterPro: IPR002659 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases | Back alignment and domain information |
|---|
Probab=95.06 E-value=0.12 Score=43.99 Aligned_cols=165 Identities=12% Similarity=0.069 Sum_probs=90.0
Q ss_pred CceEEEEEECCCC--cch-HHHHHHHHHHcCCCcEEEEEcCCC---CC-hH-HHHHHHHHhcC-CCEEEEEeCCCCCCcc
Q 019818 102 FTYEVLIIDDGSS--DGT-KRVAFDFVRKYTVDNVRIILLGRN---HG-KG-EAIRKGMLHSR-GELLLMLDADGATKVT 172 (335)
Q Consensus 102 ~~~eiivvdd~s~--d~t-~~~~~~~~~~~~~~~i~vi~~~~~---~G-k~-~aln~g~~~a~-~d~v~~~DaD~~~~~~ 172 (335)
...+++++-..+. +.. .+.+.+-.+++. .+-.....+. .. |. .+++.+.+++. .++++.+|+|..+.++
T Consensus 19 ~~~~~~FvvG~~~~~~~~~~~~l~~E~~~y~--Dil~~d~~D~y~nlt~K~~~~~~w~~~~c~~~~~v~k~DDD~~vn~~ 96 (195)
T PF01762_consen 19 VRVKVVFVVGESPNSDSDLQEALQEEAEKYG--DILQGDFVDSYRNLTLKTLAGLKWASKHCPNAKYVLKVDDDVFVNPD 96 (195)
T ss_pred CcEEEEEEEecCCCCcHHHHHHhhhhhhhcC--ceEeeecccccchhhHHHHHHHHHHHhhCCchhheeecCcEEEEehH
Confidence 5677777766555 332 333444445566 5655555443 22 22 56777777776 7999999999999998
Q ss_pred hHHHHHHHHHHhccccccCCCcccccccccccCCCeeeeecchhhhhHhhhhhhhhHHHHHHHHHHHHHHHhCCCCccCC
Q 019818 173 DLEKLESQIHAVGRKEYNHGDSVTVDSTFRISDIPIAAFGSRAHLEEKALATRKWYRNFLMKGFHLVVILTAGPGIRDTQ 252 (335)
Q Consensus 173 ~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (335)
.|...+......... ..+.|........ . .....+...... ......-.....
T Consensus 97 ~l~~~L~~~~~~~~~--------------------~~~~g~~~~~~~~-~-r~~~~kw~v~~~-----~y~~~~yP~y~~ 149 (195)
T PF01762_consen 97 RLVSFLKSLKQDPSK--------------------NSIYGGCIKNGPP-I-RDPSSKWYVSEE-----EYPDDYYPPYCS 149 (195)
T ss_pred HhhhhhhhcccCccc--------------------cccccccccCCcc-c-cccccCceeeee-----ecccccCCCcCC
Confidence 887777666211222 2333333211100 0 000001000000 000011122234
Q ss_pred CceeeeeHHHHHHhhhhhh--hccccchHHHHHHhHHcCCCEEEe
Q 019818 253 CGFKMFTRAAARKLFTNIR--LKRWCFDVELVYLCKRFGIPIIEI 295 (335)
Q Consensus 253 ~g~~~~~r~~l~~i~~~~~--~~~~~~D~el~~r~~~~G~~i~~~ 295 (335)
|++.++++++++.+..... ..-..+|.-+...+.+.|.+....
T Consensus 150 G~~yvls~~~v~~i~~~~~~~~~~~~eDv~iGi~~~~~~i~~~~~ 194 (195)
T PF01762_consen 150 GGGYVLSSDVVKRIYKASSHTPFFPLEDVFIGILAEKLGIKPIHD 194 (195)
T ss_pred CCeEEecHHHHHHHHHHhhcCCCCCchHHHHHHHHHHCCCCccCC
Confidence 5677999999999944322 223345999999999998765443
|
These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 31 (GH31 from CAZY) comprises enzymes with a number of known activities; N-acetyllactosaminide beta-1,3-N-acetylglucosaminyltransferase (2.4.1.149 from EC); beta-1,3-galactosyltransferase (2.4.1 from EC); fucose-specific beta-1,3-N-acetylglucosaminyltransferase (2.4.1 from EC); globotriosylceramide beta-1,3-GalNAc transferase (2.4.1.79 from EC) [, ].; GO: 0008378 galactosyltransferase activity, 0006486 protein glycosylation, 0016020 membrane |
| >PF12804 NTP_transf_3: MobA-like NTP transferase domain; PDB: 3FWW_A 2XME_D 2XMH_C 2DPW_A 2WAW_A 2OI5_B 1HV9_B 1FWY_A 2OI6_A 2OI7_B | Back alignment and domain information |
|---|
Probab=94.92 E-value=0.13 Score=41.95 Aligned_cols=94 Identities=11% Similarity=0.200 Sum_probs=67.2
Q ss_pred EeccCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCcchHHHHHHHHHHcCCCcEEEEEcC-CCCChHHHHHH
Q 019818 72 IPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLG-RNHGKGEAIRK 150 (335)
Q Consensus 72 ip~~ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~vi~~~-~~~Gk~~aln~ 150 (335)
+|. ++...|+.+++.+.+. ..-+|+|+... ++..+ .+ .+. ++.++..+ ...|-..++..
T Consensus 19 ~~i-~g~~li~~~l~~l~~~----------~~~~Ivvv~~~--~~~~~---~~-~~~---~~~~v~~~~~~~G~~~sl~~ 78 (160)
T PF12804_consen 19 LPI-GGKPLIERVLEALREA----------GVDDIVVVTGE--EEIYE---YL-ERY---GIKVVVDPEPGQGPLASLLA 78 (160)
T ss_dssp SEE-TTEEHHHHHHHHHHHH----------TESEEEEEEST--HHHHH---HH-TTT---TSEEEE-STSSCSHHHHHHH
T ss_pred eeE-CCccHHHHHHHHhhcc----------CCceEEEecCh--HHHHH---HH-hcc---CceEEEeccccCChHHHHHH
Confidence 555 7767788887777663 12478888765 22222 22 222 56777665 46899999999
Q ss_pred HHHhc-CCCEEEEEeCCCC-CCcchHHHHHHHHHHhc
Q 019818 151 GMLHS-RGELLLMLDADGA-TKVTDLEKLESQIHAVG 185 (335)
Q Consensus 151 g~~~a-~~d~v~~~DaD~~-~~~~~l~~l~~~~~~~~ 185 (335)
|+... ..+.++++.+|.. ++++.+.++++.+++.+
T Consensus 79 a~~~~~~~~~vlv~~~D~p~~~~~~l~~l~~~~~~~~ 115 (160)
T PF12804_consen 79 ALSQLPSSEPVLVLPCDQPFLSPELLRRLLEALEKSP 115 (160)
T ss_dssp HHHTSTTSSEEEEEETTETTS-HHHHHHHHHHHHHTT
T ss_pred HHHhcccCCCcEEEeCCccccCHHHHHHHHHHHhccC
Confidence 99998 8899999999995 59999999999997643
|
... |
| >PLN02248 cellulose synthase-like protein | Back alignment and domain information |
|---|
Probab=94.68 E-value=0.016 Score=60.29 Aligned_cols=55 Identities=16% Similarity=0.152 Sum_probs=44.5
Q ss_pred HcCCCcEEEEEcCCCCC-----hHHHHHHHHHh----cCCCEEEEEeCCCCCC-cchHHHHHHHHHH
Q 019818 127 KYTVDNVRIILLGRNHG-----KGEAIRKGMLH----SRGELLLMLDADGATK-VTDLEKLESQIHA 183 (335)
Q Consensus 127 ~~~~~~i~vi~~~~~~G-----k~~aln~g~~~----a~~d~v~~~DaD~~~~-~~~l~~l~~~~~~ 183 (335)
+.| .+.++.+++++| |++|+|.-++. +.+++|+.+|+|..+. +..+.+.+=.|.+
T Consensus 583 ~lP--~LVYVSREKRPg~~Hh~KAGAMNALlRVSavmTNgPfILNLDCDmYiNns~alr~AMCf~lD 647 (1135)
T PLN02248 583 RLP--MLVYVSREKRPGYDHNKKAGAMNALVRASAIMSNGPFILNLDCDHYIYNSLAIREGMCFMMD 647 (1135)
T ss_pred ccc--eeEEEecccCCCCCcccccchhhhHHHhhhhccCCCeEEEeccCcccCCchhHHhcchheec
Confidence 455 788888888776 99999998874 5799999999999874 4588888877754
|
|
| >cd02508 ADP_Glucose_PP ADP-glucose pyrophosphorylase is involved in the biosynthesis of glycogen or starch | Back alignment and domain information |
|---|
Probab=94.67 E-value=1.5 Score=37.18 Aligned_cols=156 Identities=13% Similarity=0.071 Sum_probs=93.0
Q ss_pred EEeccCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCcchHHHHHHHHHHcC----CCcEEEEEc------CC
Q 019818 71 IIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYT----VDNVRIILL------GR 140 (335)
Q Consensus 71 iip~~ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~----~~~i~vi~~------~~ 140 (335)
++|+.|..+.|..+++.+.. ..--+|+|+.+...+...+.+.+. ..++ ..++.++.. +.
T Consensus 23 llpv~g~~pli~~~l~~l~~----------~gi~~iivv~~~~~~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (200)
T cd02508 23 AVPFGGRYRLIDFPLSNMVN----------SGIRNVGVLTQYKSRSLNDHLGSG-KEWDLDRKNGGLFILPPQQRKGGDW 91 (200)
T ss_pred eeEECCeeeeHHHHHHHHHH----------CCCCEEEEEeCCChHHHHHHHhCC-CcccCCCCCCCEEEeCcccCCCCCc
Confidence 77887765677777777765 224678887765443333332211 0011 113555542 33
Q ss_pred CCChHHHHHHHHHhcC---CCEEEEEeCCCCCCcchHHHHHHHHHHhccccccCCCcccccccccccCCCeeeeecchhh
Q 019818 141 NHGKGEAIRKGMLHSR---GELLLMLDADGATKVTDLEKLESQIHAVGRKEYNHGDSVTVDSTFRISDIPIAAFGSRAHL 217 (335)
Q Consensus 141 ~~Gk~~aln~g~~~a~---~d~v~~~DaD~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~g~~~~~ 217 (335)
..|-+.|+..|..... .+.++++.+|. +.+..+.++++...+... .+.+...
T Consensus 92 ~~Gta~al~~a~~~i~~~~~~~~lv~~gD~-v~~~~~~~~l~~~~~~~~---------------------~~t~~~~--- 146 (200)
T cd02508 92 YRGTADAIYQNLDYIERSDPEYVLILSGDH-IYNMDYREMLDFHIESGA---------------------DITVVYK--- 146 (200)
T ss_pred ccCcHHHHHHHHHHHHhCCCCEEEEecCCE-EEecCHHHHHHHHHHcCC---------------------CEEEEEh---
Confidence 5788999999988763 47888999998 455678888887654321 2222111
Q ss_pred hhHhhhhhhhhHHHHHHHHHHHHHHHhCCCCccCCCceeeeeHHHHHHhhhhhh-hccccchHHHHHHhHHcCCCEEEee
Q 019818 218 EEKALATRKWYRNFLMKGFHLVVILTAGPGIRDTQCGFKMFTRAAARKLFTNIR-LKRWCFDVELVYLCKRFGIPIIEIS 296 (335)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~r~~l~~i~~~~~-~~~~~~D~el~~r~~~~G~~i~~~p 296 (335)
..+|..+|+++++.++..... .....+..|+...+...+ ++...+
T Consensus 147 ---------------------------------~~~g~yi~~~~~~~~~l~~~~~~~~~~~~~d~i~~l~~~~-~v~~~~ 192 (200)
T cd02508 147 ---------------------------------ASMGIYIFSKDLLIELLEEDAADGSHDFGKDIIPAMLKKL-KIYAYE 192 (200)
T ss_pred ---------------------------------hcCEEEEEEHHHHHHHHHHHhccCcchhHHHHHHHHhccC-cEEEEE
Confidence 466778999999876643321 122234567777777774 555443
|
ADP-glucose pyrophosphorylase (glucose-1-phosphate adenylyltransferase) catalyzes a very important step in the biosynthesis of alpha 1,4-glucans (glycogen or starch) in bacteria and plants: synthesis of the activated glucosyl donor, ADP-glucose, from glucose-1-phosphate and ATP. ADP-glucose pyrophosphorylase is a tetrameric allosterically regulated enzyme. While a homotetramer in bacteria, in plant chloroplasts and amyloplasts, it is a heterotetramer of two different, yet evolutionary related, subunits. There are a number of conserved regions in the sequence of bacterial and plant ADP-glucose pyrophosphorylase subunits. It is a subfamily of a very diverse glycosy transferase family 2. |
| >PF04666 Glyco_transf_54: N-Acetylglucosaminyltransferase-IV (GnT-IV) conserved region; InterPro: IPR006759 The complex-type of oligosaccharides are synthesised through elongation by glycosyltransferases after trimming of the precursor oligosaccharides transferred to proteins in the endoplasmic reticulum | Back alignment and domain information |
|---|
Probab=94.62 E-value=0.67 Score=42.08 Aligned_cols=117 Identities=19% Similarity=0.226 Sum_probs=71.7
Q ss_pred CceEEEEEec--cCCCCChHHHHHHHHHHHHHhhhcCCCCceEEE-EEECCCCcchHHHHHHHHHHcC----CCcEEEEE
Q 019818 65 EKYISLIIPA--FNEEHRLPGALDETLNYLQQRAAKDKSFTYEVL-IIDDGSSDGTKRVAFDFVRKYT----VDNVRIIL 137 (335)
Q Consensus 65 ~~~vsViip~--~ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eii-vvdd~s~d~t~~~~~~~~~~~~----~~~i~vi~ 137 (335)
.++++|-||+ +..+..|.+||.|+++.+.. +.....-|+ .+.|...+.....++++..+++ .+.+.|+.
T Consensus 51 ~~~L~IGIpTV~R~~~sYL~~TL~SLl~~ls~----~Er~~i~IvVllAd~Dp~~~~~~~~~i~~~f~~~i~sG~l~VI~ 126 (297)
T PF04666_consen 51 GKKLCIGIPTVKREKESYLLDTLASLLDGLSP----EERKDIVIVVLLADTDPDYHPSVAQNISTRFADHIESGLLEVIS 126 (297)
T ss_pred CCeEEEEecccccCCCchHHHHHHHHHHhCCH----HHhcCeEEEEEecCCChhhhHHHHHHHHHHhHHHHHhCceEEEe
Confidence 3459999999 44467899999999997664 122233333 3444333334555555544333 22455555
Q ss_pred cCCC-----------CC----------h---HHHHHHHHHhcCCCEEEEEeCCCCCCcchHHHHHHHHHHhc
Q 019818 138 LGRN-----------HG----------K---GEAIRKGMLHSRGELLLMLDADGATKVTDLEKLESQIHAVG 185 (335)
Q Consensus 138 ~~~~-----------~G----------k---~~aln~g~~~a~~d~v~~~DaD~~~~~~~l~~l~~~~~~~~ 185 (335)
.+.. .| | -.|.-.......|+|.+.+.+|....++++.++...+....
T Consensus 127 ~p~~~Yp~l~~l~~~~~d~~~rv~wrsKq~lDya~Lm~y~~~~~~YyL~LEDDVia~~~f~~~i~~~v~~~~ 198 (297)
T PF04666_consen 127 PPPSYYPDLDNLKRNFGDSEERVRWRSKQNLDYAFLMNYCQNLGDYYLQLEDDVIAAPGFLSRIKRFVEAWE 198 (297)
T ss_pred cccccCCChhhhhhcccChhhhhhHHHhhcccHHHHHHHHHhcCCeEEEecCCeEechhHHHHHHHHHHHhc
Confidence 5432 11 1 01222223334689999999999999999999999887653
|
N-Acetylglucosaminyltransferases (GnTs) take part in the formation of branches in the biosynthesis of complex-type sugar chains. In vertebrates, six GnTs, designated as GnT-I to -VI, which catalyse the transfer of GlcNAc to the core mannose residues of Asn-linked sugar chains, have been identified. GnT-IV (2.4.1.145 from EC) catalyzes the transfer of GlcNAc from UDP-GlcNAc to the GlcNAc1-2Man1-3 arm of core oligosaccharide [Gn2(22)core oligosaccharide] and forms a GlcNAc1-4(GlcNAc1-2)Man1-3 structure on the core oligosaccharide (Gn3(2,4,2)core oligosaccharide). In some members the conserved region occupies all but the very N-terminal, where there is a signal sequence on all members. For other members the conserved region does not occupy the entire protein but is still to the N-terminal end of the protein [].; GO: 0016758 transferase activity, transferring hexosyl groups, 0005975 carbohydrate metabolic process, 0016020 membrane |
| >cd02540 GT2_GlmU_N_bac N-terminal domain of bacterial GlmU | Back alignment and domain information |
|---|
Probab=94.62 E-value=0.25 Score=42.81 Aligned_cols=96 Identities=16% Similarity=0.184 Sum_probs=65.1
Q ss_pred EEeccCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCcchHHHHHHHHHHcCCCcEEEEEcCCCCChHHHHHH
Q 019818 71 IIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNHGKGEAIRK 150 (335)
Q Consensus 71 iip~~ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~vi~~~~~~Gk~~aln~ 150 (335)
++|+-+ ...|..+++++.+. .-.+|+++..... +.+.+....+ ++.++..+...|.+.++..
T Consensus 20 l~~v~g-kpli~~~i~~l~~~----------~i~~i~iv~~~~~----~~i~~~~~~~---~~~~~~~~~~~g~~~ai~~ 81 (229)
T cd02540 20 LHPLAG-KPMLEHVLDAARAL----------GPDRIVVVVGHGA----EQVKKALANP---NVEFVLQEEQLGTGHAVKQ 81 (229)
T ss_pred cceeCC-ccHHHHHHHHHHhC----------CCCeEEEEECCCH----HHHHHHhCCC---CcEEEECCCCCCCHHHHHH
Confidence 456544 47777777777651 2346666664222 2233332222 5777777767889999999
Q ss_pred HHHhcC--CCEEEEEeCCC-CCCcchHHHHHHHHHHh
Q 019818 151 GMLHSR--GELLLMLDADG-ATKVTDLEKLESQIHAV 184 (335)
Q Consensus 151 g~~~a~--~d~v~~~DaD~-~~~~~~l~~l~~~~~~~ 184 (335)
|+.... .+.++++++|. .+.++.+.++++.+.+.
T Consensus 82 a~~~~~~~~~~vli~~~D~p~~~~~~i~~l~~~~~~~ 118 (229)
T cd02540 82 ALPALKDFEGDVLVLYGDVPLITPETLQRLLEAHREA 118 (229)
T ss_pred HHHhhccCCCeEEEEeCCccccCHHHHHHHHHHHHhc
Confidence 998875 68999999999 46888999999887653
|
The N-terminal domain of N-Acetylglucosamine-1-phosphate uridyltransferase (GlmU). GlmU is an essential bacterial enzyme with both an acetyltransferase and an uridyltransferase activity which have been mapped to the C-terminal and N-terminal domains, respectively. This family represents the N-terminal uridyltransferase. GlmU performs the last two steps in the synthesis of UDP-N-acetylglucosamine (UDP-GlcNAc), which is an essential precursor in both the peptidoglycan and the lipopolysaccharide metabolic pathways in Gram-positive and Gram-negative bacteria, respectively. |
| >PLN02917 CMP-KDO synthetase | Back alignment and domain information |
|---|
Probab=94.53 E-value=0.58 Score=42.55 Aligned_cols=52 Identities=8% Similarity=0.219 Sum_probs=36.6
Q ss_pred cEEEEEcC--CCCChHHHHHHHHHhcC--CCEEEEEeCCCC-CCcchHHHHHHHHHHh
Q 019818 132 NVRIILLG--RNHGKGEAIRKGMLHSR--GELLLMLDADGA-TKVTDLEKLESQIHAV 184 (335)
Q Consensus 132 ~i~vi~~~--~~~Gk~~aln~g~~~a~--~d~v~~~DaD~~-~~~~~l~~l~~~~~~~ 184 (335)
++.++..+ ...|-+.+ ..|++... .|+++++++|.. ++++.+.++++.+.++
T Consensus 108 ~v~vi~~~~~~~~GT~~~-~~a~~~l~~~~d~Vlil~gD~PlI~~~tI~~li~~~~~~ 164 (293)
T PLN02917 108 GADVIMTSESCRNGTERC-NEALKKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAA 164 (293)
T ss_pred CCEEEeCCcccCCchHHH-HHHHHhccCCCCEEEEecCCcCCCCHHHHHHHHHHHHhc
Confidence 35555432 23454444 56776664 589999999997 6999999999988654
|
|
| >cd00218 GlcAT-I Beta1,3-glucuronyltransferase I (GlcAT-I) is involved in the initial steps of proteoglycan synthesis | Back alignment and domain information |
|---|
Probab=94.15 E-value=0.49 Score=40.84 Aligned_cols=96 Identities=13% Similarity=0.151 Sum_probs=61.7
Q ss_pred ceEEEEEeccCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEECCC--CcchHHHHHHHHHHcCCCcEEEEEcC--CC
Q 019818 66 KYISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGS--SDGTKRVAFDFVRKYTVDNVRIILLG--RN 141 (335)
Q Consensus 66 ~~vsViip~~ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s--~d~t~~~~~~~~~~~~~~~i~vi~~~--~~ 141 (335)
|.|-||-|+|.......+ |..+.+.+.. -+++.-|||+|+. ++.+.+++++. ++.+.+.. .+
T Consensus 1 p~i~vVTPTy~R~~Q~~~-LtRLa~TL~l------Vp~l~WIVVEd~~~~t~~va~lL~~s-------gl~y~HL~~~~~ 66 (223)
T cd00218 1 PTIYVVTPTYARPVQKAE-LTRLAHTLRL------VPPLHWIVVEDSEEKTPLVAELLRRS-------GLMYTHLNAKTP 66 (223)
T ss_pred CeEEEECCCCccchhhHH-HHHHHHHHhc------CCceEEEEEeCCCCCCHHHHHHHHHc-------CCceEEeccCCC
Confidence 348899999999766554 4566666654 3389999999986 33344444443 34444432 11
Q ss_pred --------CChHHHHHHHHHhcC-------CCEEEEEeCCCCCCcchHHH
Q 019818 142 --------HGKGEAIRKGMLHSR-------GELLLMLDADGATKVTDLEK 176 (335)
Q Consensus 142 --------~Gk~~aln~g~~~a~-------~d~v~~~DaD~~~~~~~l~~ 176 (335)
.| ...+|.|+++.+ .-+|.|-|+|...+-+..++
T Consensus 67 ~~~~~~~~rg-~~qRn~AL~~ir~~~~~~~~GVVyFADDdN~Ysl~lF~e 115 (223)
T cd00218 67 SDPTWLKPRG-VEQRNLALRWIREHLSAKLDGVVYFADDDNTYDLELFEE 115 (223)
T ss_pred CCcccCCccc-HHHHHHHHHHHHhccccCcceEEEEccCCCcccHHHHHH
Confidence 22 356888888763 24677778888888776666
|
Beta1,3-glucuronyltransferase I (GlcAT-I) domain; GlcAT-I is a Key enzyme involved in the initial steps of proteoglycan synthesis. GlcAT-I catalyzes the transfer of a glucuronic acid moiety from the uridine diphosphate-glucuronic acid (UDP-GlcUA) to the common linkage region of trisaccharide Gal-beta-(1-3)-Gal-beta-(1-4)-Xyl of proteoglycans. The enzyme has two subdomains that bind the donor and acceptor substrate separately. The active site is located at the cleft between both subdomains in which the trisaccharide molecule is oriented perpendicular to the UDP. This family has been classified as Glycosyltransferase family 43 (GT-43). |
| >cd02516 CDP-ME_synthetase CDP-ME synthetase is involved in mevalonate-independent isoprenoid production | Back alignment and domain information |
|---|
Probab=93.96 E-value=0.47 Score=40.75 Aligned_cols=99 Identities=12% Similarity=0.168 Sum_probs=60.4
Q ss_pred EEeccCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCcchHHHHHHHHHHcCCCcEEEEEcCCCCChHHHHHH
Q 019818 71 IIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNHGKGEAIRK 150 (335)
Q Consensus 71 iip~~ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~vi~~~~~~Gk~~aln~ 150 (335)
++|. ++...+..+++.+.. ....-+|+|+.+.... +.............+.++.. ..|...++..
T Consensus 22 l~~i-~Gkpll~~~i~~l~~---------~~~~~~ivVv~~~~~~---~~~~~~~~~~~~~~~~~~~~--~~~~~~si~~ 86 (218)
T cd02516 22 FLEL-GGKPVLEHTLEAFLA---------HPAIDEIVVVVPPDDI---DLAKELAKYGLSKVVKIVEG--GATRQDSVLN 86 (218)
T ss_pred eeEE-CCeEHHHHHHHHHhc---------CCCCCEEEEEeChhHH---HHHHHHHhcccCCCeEEECC--chHHHHHHHH
Confidence 4444 455667777776654 1113467777653322 22222211111113444432 2467888999
Q ss_pred HHHhc---CCCEEEEEeCCCC-CCcchHHHHHHHHHHh
Q 019818 151 GMLHS---RGELLLMLDADGA-TKVTDLEKLESQIHAV 184 (335)
Q Consensus 151 g~~~a---~~d~v~~~DaD~~-~~~~~l~~l~~~~~~~ 184 (335)
|++.. ..++++++++|.. ++++.+.++++.+.+.
T Consensus 87 al~~~~~~~~~~vlv~~~D~P~i~~~~i~~li~~~~~~ 124 (218)
T cd02516 87 GLKALPDADPDIVLIHDAARPFVSPELIDRLIDALKEY 124 (218)
T ss_pred HHHhcccCCCCEEEEccCcCCCCCHHHHHHHHHHHhhC
Confidence 99986 4689999999986 6999999999988553
|
4-diphosphocytidyl-2-methyl-D-erythritol synthase (CDP-ME), also called 2C-methyl-d-erythritol 4-phosphate cytidylyltransferase catalyzes the third step in the alternative (non-mevalonate) pathway of Isopentenyl diphosphate (IPP) biosynthesis: the formation of 4-diphosphocytidyl-2C-methyl-D-erythritol from CTP and 2C-methyl-D-erythritol 4-phosphate. This mevalonate independent pathway that utilizes pyruvate and glyceraldehydes 3-phosphate as starting materials for production of IPP occurs in a variety of bacteria, archaea and plant cells, but is absent in mammals. Thus, CDP-ME synthetase is an attractive targets for the structure-based design of selective antibacterial, herbicidal and antimalarial drugs. |
| >cd04182 GT_2_like_f GT_2_like_f is a subfamily of the glycosyltransferase family 2 (GT-2) with unknown function | Back alignment and domain information |
|---|
Probab=93.93 E-value=0.52 Score=39.10 Aligned_cols=91 Identities=19% Similarity=0.210 Sum_probs=59.0
Q ss_pred CCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCcchHHHHHHHHHHcCCCcEEEEEcC-CCCChHHHHHHHHHh
Q 019818 76 NEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLG-RNHGKGEAIRKGMLH 154 (335)
Q Consensus 76 ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~vi~~~-~~~Gk~~aln~g~~~ 154 (335)
++...++.+++.+... ...+|+|+.+.... +. ....... ++.++..+ ...|...++..|++.
T Consensus 24 ~g~~li~~~i~~l~~~----------~~~~i~vv~~~~~~---~~-~~~~~~~---~~~~~~~~~~~~G~~~~i~~al~~ 86 (186)
T cd04182 24 DGKPLLRHALDAALAA----------GLSRVIVVLGAEAD---AV-RAALAGL---PVVVVINPDWEEGMSSSLAAGLEA 86 (186)
T ss_pred CCeeHHHHHHHHHHhC----------CCCcEEEECCCcHH---HH-HHHhcCC---CeEEEeCCChhhCHHHHHHHHHHh
Confidence 4556677776766541 12467777543222 11 1221221 35555543 336888999999998
Q ss_pred cC--CCEEEEEeCCC-CCCcchHHHHHHHHHH
Q 019818 155 SR--GELLLMLDADG-ATKVTDLEKLESQIHA 183 (335)
Q Consensus 155 a~--~d~v~~~DaD~-~~~~~~l~~l~~~~~~ 183 (335)
+. .|+++++.+|. .++++.+.++++.+.+
T Consensus 87 ~~~~~~~vlv~~~D~P~i~~~~i~~l~~~~~~ 118 (186)
T cd04182 87 LPADADAVLILLADQPLVTAETLRALIDAFRE 118 (186)
T ss_pred ccccCCEEEEEeCCCCCCCHHHHHHHHHHHHh
Confidence 86 79999999999 4688999999988764
|
GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families. |
| >PF03214 RGP: Reversibly glycosylated polypeptide; InterPro: IPR004901 Alpha-1,4-glucan-protein synthase catalyses the reaction: |
Back alignment and domain information |
|---|
Probab=93.89 E-value=0.071 Score=48.24 Aligned_cols=100 Identities=18% Similarity=0.317 Sum_probs=66.1
Q ss_pred ceEEEEEeccCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCcchHHHHHHHHHHcCCCcEEEEEcCC---CC
Q 019818 66 KYISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGR---NH 142 (335)
Q Consensus 66 ~~vsViip~~ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~vi~~~~---~~ 142 (335)
..+.||||+-+.. |...+++....+. ++++|||-|+...+..++.+.+ +..+..... -.
T Consensus 8 ~~~divi~~~~~~--l~~~~~~wr~~~~---------~~hliiv~d~~~~~~~~~p~g~-------~~~~y~~~di~~~l 69 (348)
T PF03214_consen 8 DEVDIVIPALRPN--LTDFLEEWRPFFS---------PYHLIIVQDPDPNEEIKVPEGF-------DYEVYNRNDIERVL 69 (348)
T ss_pred CcccEEeeccccc--HHHHHHHHHHhhc---------ceeEEEEeCCCccccccCCccc-------ceeeecHhhHHhhc
Confidence 3499999998753 4567777766433 6999999997665554443332 223322211 01
Q ss_pred C--------hHHHHHHHHHhcCCCEEEEEeCCCCCCcchHHHHHHHHHH
Q 019818 143 G--------KGEAIRKGMLHSRGELLLMLDADGATKVTDLEKLESQIHA 183 (335)
Q Consensus 143 G--------k~~aln~g~~~a~~d~v~~~DaD~~~~~~~l~~l~~~~~~ 183 (335)
| -.+.+|.|+-.++.+|++++|.|+.+..|..-..++.+..
T Consensus 70 g~~~~i~~~~~a~R~fGyL~s~~~yivsiDDD~~P~~D~~g~~~~~v~q 118 (348)
T PF03214_consen 70 GAKTLIPFKGDACRNFGYLVSKKDYIVSIDDDCLPAKDDFGTHIDAVAQ 118 (348)
T ss_pred CCcccccccccchhhhHhhhcccceEEEEccccccccCCccceehhhhc
Confidence 1 2345889999999999999999999887766555555543
|
It is found associated with the cell wall, with the highest concentrations in the plasmodesmata. It is also located in the Golgi apparatus.; GO: 0008466 glycogenin glucosyltransferase activity, 0016758 transferase activity, transferring hexosyl groups, 0007047 cellular cell wall organization, 0030244 cellulose biosynthetic process, 0005618 cell wall, 0030054 cell junction |
| >PF02434 Fringe: Fringe-like; InterPro: IPR003378 The Notch receptor is a large, cell surface transmembrane protein involved in a wide variety of developmental processes in higher organisms [] | Back alignment and domain information |
|---|
Probab=93.55 E-value=0.15 Score=45.29 Aligned_cols=117 Identities=18% Similarity=0.209 Sum_probs=57.6
Q ss_pred cCCCEEEEEeCCCCCCcchHHHHHHHHHHhccccccCCCcccccccccccCCCeeeeecchhhhhHhhhhhhhhHHHHHH
Q 019818 155 SRGELLLMLDADGATKVTDLEKLESQIHAVGRKEYNHGDSVTVDSTFRISDIPIAAFGSRAHLEEKALATRKWYRNFLMK 234 (335)
Q Consensus 155 a~~d~v~~~DaD~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~g~~~~~~~~~~~~~~~~~~~~~~ 234 (335)
...+|.+++|+|+.+..+.|.+++..+.... ++.+|.+........ ...+
T Consensus 85 ~~~~Wf~~~DDDtyv~~~~L~~~L~~~~~~~----------------------~~yiG~~~~~~~~~~-----~~~~--- 134 (252)
T PF02434_consen 85 SDKDWFCFADDDTYVNVENLRRLLSKYDPSE----------------------PIYIGRPSGDRPIEI-----IHRF--- 134 (252)
T ss_dssp HT-SEEEEEETTEEE-HHHHHHHHTTS-TTS------------------------EEE-EE-------------------
T ss_pred CCceEEEEEeCCceecHHHHHHHHhhCCCcc----------------------CEEeeeeccCcccee-----eccc---
Confidence 4569999999999999999999998875432 577787753211000 0000
Q ss_pred HHHHHHHHHhCCCCccCCCceeeeeHHHHHHhhh---hhhh------ccccchHHHHHHhHH-cCCCEEEeeeEEEecCC
Q 019818 235 GFHLVVILTAGPGIRDTQCGFKMFTRAAARKLFT---NIRL------KRWCFDVELVYLCKR-FGIPIIEISVNWSEIPG 304 (335)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~g~~~~~r~~l~~i~~---~~~~------~~~~~D~el~~r~~~-~G~~i~~~p~~~~~~~~ 304 (335)
........+..+...++| .+++|.+++++.+ .... ....+|+.+..-+.. .|.++...+..+.+.+.
T Consensus 135 --~~~~~~~~~~~f~~GGaG-~vlSr~~~~k~~~~~~~~~~~~~~~~~~~~dD~~lG~ci~~~lgv~lt~s~~fhs~~~~ 211 (252)
T PF02434_consen 135 --NPNKSKDSGFWFATGGAG-YVLSRALLKKMSPWASGCKCPSTDEKIRLPDDMTLGYCIENLLGVPLTHSPLFHSHLEN 211 (252)
T ss_dssp -------------EE-GGG--EEEEHHHHHHHHHHHTT-TTS--TTTTTS-HHHHHHHHHHHTT---EEE-TT---SSS-
T ss_pred --cccccCcCceEeeCCCee-HHHhHHHHHHHhhhcccccccCCcCCCCCcccChhhhhHHhcCCcceeechhhcccCcc
Confidence 000001111222334444 4899999999822 1111 234679999999988 99888888766555433
|
It becomes activated when its extracellular region binds to ligands located on adjacent cells. Much of this extracellular region is composed of EGF-like repeats, many of which can be O-fucosylated. A number of these O-fucosylated repeats can in turn be further modified by the action of a beta-1,3-N-acetylglucosaminyltransferase enzyme known as Fringe []. Fringe potentiates the activation of Notch by Delta ligands, while inhibiting activation by Serrate/Jagged ligands. This regulation of Notch signalling by Fringe is important in many processes []. Four distinct Fringe proteins have so far been studied in detail; Drosophila Fringe (Dfng) and its three mammalian homologues Lunatic Fringe (Lfng), Radical Fringe (Rfng) and Manic Fringe (Mfng). Dfng, Lfng and Rfng have all been shown to play important roles in developmental processes within their host, though the phenotype of mutants can vary between species e.g. Rfng mutants are retarded in wing development in chickens, but have no obvious phenotype in mice [, , ]. Mfng mutants have not, so far, been charcterised. Biochemical studies indicate that the Fringe proteins are fucose-specific transferases requiring manganese for activity and utilising UDP-N-acetylglucosamine as a donor substrate []. The three mammalian proteins show distinct variations in their catalytic efficiencies with different substrates. Dfng is a glucosaminyltransferase that controls the response of the Notch receptor to specific ligands which is localised to the Golgi apparatus [] (not secreted as previously thought). Modification of Notch occurs through glycosylation by Dfng. This entry consists of Fringe proteins and related glycosyltransferase enzymes including: Beta-1,3-glucosyltransferase, which glucosylates O-linked fucosylglycan on thrombospondin type 1 repeat domains []. Core 1 beta1,3-galactosyltransferase 1, generates the core T antigen, which is a precursor for many extended O-glycans in glycoproteins and plays a central role in many processes, such as angiogenesis, thrombopoiesis and kidney homeostasis development []. ; GO: 0016757 transferase activity, transferring glycosyl groups, 0016020 membrane; PDB: 2J0B_A 2J0A_A. |
| >PF02709 Glyco_transf_7C: N-terminal domain of galactosyltransferase; InterPro: IPR003859 This is a family of galactosyltransferases from a wide range of metazoa with three related galactosyltransferase activities; all three of which are possessed by one sequence in some cases | Back alignment and domain information |
|---|
Probab=93.50 E-value=0.094 Score=37.51 Aligned_cols=48 Identities=19% Similarity=0.187 Sum_probs=31.3
Q ss_pred ccCCCceeeeeHHHHHHhhhh-hhhccc-cchHHHHHHhHHcCCCEEEee
Q 019818 249 RDTQCGFKMFTRAAARKLFTN-IRLKRW-CFDVELVYLCKRFGIPIIEIS 296 (335)
Q Consensus 249 ~~~~~g~~~~~r~~l~~i~~~-~~~~~~-~~D~el~~r~~~~G~~i~~~p 296 (335)
....+|..+++|+.++++.+. ....+| .||.||..|+..+|.++..++
T Consensus 17 ~~~~Gg~~~~~~~~f~~vnGfde~f~gWG~ED~Dl~~Rl~~~g~~~~~~~ 66 (78)
T PF02709_consen 17 PNFFGGVFAISREDFEKVNGFDERFWGWGGEDDDLYNRLWKAGLKIVRVP 66 (78)
T ss_dssp TT---SEEEEEHHHHHHTTSS-SS-TSCSSHHHHHHHHHHHTT---B-SS
T ss_pred CCeeEEEEEEeHHHHHHcCCCCccccccCccHHHHHHHHHHcCCeEEecC
Confidence 335677789999999999433 233555 379999999999999988765
|
The three functions are N-acetyllactosamine synthase (2.4.1.90 from EC); beta-N-acetylglucosaminyl-glycopeptide beta-1,4-galactosyltransferase (2.4.1.38 from EC); and lactose synthase (2.4.1.22 from EC). Note that N-acetyllactosamine synthase is a component of lactose synthase along with alpha-lactalbumin, in the absence of alpha-lactalbumin N-acetyllactosamine synthase is used.; GO: 0016757 transferase activity, transferring glycosyl groups, 0005975 carbohydrate metabolic process; PDB: 2AGD_B 3EE5_A 2AE7_B 2AEC_A 2FYA_A 2AES_B 2AH9_A 2FYB_A 2FY7_A 3LW6_A .... |
| >TIGR03202 pucB xanthine dehydrogenase accessory protein pucB | Back alignment and domain information |
|---|
Probab=93.20 E-value=1.1 Score=37.53 Aligned_cols=96 Identities=10% Similarity=0.119 Sum_probs=61.0
Q ss_pred CCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCcchHHHHHHHHHHcCCCcEEEEEcCC-CCChHHHHHHHHHh
Q 019818 76 NEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGR-NHGKGEAIRKGMLH 154 (335)
Q Consensus 76 ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~vi~~~~-~~Gk~~aln~g~~~ 154 (335)
++...+..+++.+++ . .--+|+||.+.. ++..+.+.+...... ++.++..+. ..|...++..|++.
T Consensus 24 ~g~~ll~~~i~~~~~---------~-~~~~i~vv~~~~-~~~~~~~~~~~~~~~--~~~~~~~~~~~~G~~~si~~gl~~ 90 (190)
T TIGR03202 24 GETTLGSASLKTALS---------S-RLSKVIVVIGEK-YAHLSWLDPYLLADE--RIMLVCCRDACEGQAHSLKCGLRK 90 (190)
T ss_pred CCccHHHHHHHHHHh---------C-CCCcEEEEeCCc-cchhhhhhHhhhcCC--CeEEEECCChhhhHHHHHHHHHHH
Confidence 556667776666544 2 234777777543 222222222111112 455554443 45888899999997
Q ss_pred c---CCCEEEEEeCCCC-CCcchHHHHHHHHHHh
Q 019818 155 S---RGELLLMLDADGA-TKVTDLEKLESQIHAV 184 (335)
Q Consensus 155 a---~~d~v~~~DaD~~-~~~~~l~~l~~~~~~~ 184 (335)
+ ..|+++++++|.. ++++.+.+|++.+.+.
T Consensus 91 ~~~~~~d~vlv~~~D~P~v~~~~i~~L~~~~~~~ 124 (190)
T TIGR03202 91 AEAMGADAVVILLADQPFLTADVINALLALAKRR 124 (190)
T ss_pred hccCCCCeEEEEeCCCCCCCHHHHHHHHHHHhhC
Confidence 6 3699999999996 5889999999887654
|
In Bacillus subtilis the expression of this protein, located in an operon with the structural subunits of xanthine dehydrogenase, has been found to be essential for XDH activity. Some members of this family appear to have a distant relationship to the MobA protein involved in molybdopterin biosynthesis, although this may be coincidental. |
| >PLN02458 transferase, transferring glycosyl groups | Back alignment and domain information |
|---|
Probab=93.08 E-value=1.5 Score=39.99 Aligned_cols=102 Identities=11% Similarity=0.146 Sum_probs=61.6
Q ss_pred CCceEEEEEeccCC-CCChHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCcchHHHHHHHHHHcCCCcEEEEEcC--C
Q 019818 64 AEKYISLIIPAFNE-EHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLG--R 140 (335)
Q Consensus 64 ~~~~vsViip~~ne-~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~vi~~~--~ 140 (335)
..+.|-||-|+|.. ... ..-|..+.+.+.. -.+++.-|||+|+. .|.++ .++.++. ++.+.+.. .
T Consensus 110 ~~rlIivVTPTY~rR~~Q-~a~LTRLahTL~l-----Vp~pL~WIVVEd~~--~t~~v-a~lLrrs---Gl~y~HL~~k~ 177 (346)
T PLN02458 110 PRRLVIIVTPISTKDRYQ-GVLLRRLANTLRL-----VPPPLLWIVVEGQS--DSEEV-SEMLRKT---GIMYRHLVFKE 177 (346)
T ss_pred CCceEEEECCCCCCcchh-HHHHHHHHHHHhc-----CCCCceEEEEeCCC--CCHHH-HHHHHHc---CCceEEeccCC
Confidence 45679999999984 333 3345666666653 34468888888865 33332 2333333 34444332 2
Q ss_pred CC----C-hHHHHHHHHHhcC----CCEEEEEeCCCCCCcchHHHH
Q 019818 141 NH----G-KGEAIRKGMLHSR----GELLLMLDADGATKVTDLEKL 177 (335)
Q Consensus 141 ~~----G-k~~aln~g~~~a~----~d~v~~~DaD~~~~~~~l~~l 177 (335)
+. + ....+|.|+++.+ .-+|.|-|+|...+-+..++|
T Consensus 178 ~~~~~~~r~~~QRN~AL~~IR~h~l~GVVyFADDdNtYsl~LFeEm 223 (346)
T PLN02458 178 NFTDPEAELDHQRNLALRHIEHHKLSGIVHFAGLSNVYDLDFFDEI 223 (346)
T ss_pred CCCCccchhHHHHHHHHHHHHhcCcCceEEEccCCCcccHHHHHHH
Confidence 32 2 2456899998874 366777788888776666553
|
|
| >TIGR00453 ispD 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase | Back alignment and domain information |
|---|
Probab=92.60 E-value=2 Score=36.85 Aligned_cols=93 Identities=16% Similarity=0.209 Sum_probs=57.8
Q ss_pred CCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCcchHHHHHHHHHHcCCCcEEEEEcCCCCChHHHHHHHHHhc
Q 019818 76 NEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNHGKGEAIRKGMLHS 155 (335)
Q Consensus 76 ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~vi~~~~~~Gk~~aln~g~~~a 155 (335)
++...+..+++.+.. ....-+|+|+.+... .+.+.+...... .+.++.. ..+...++..|+...
T Consensus 25 ~gkpll~~~l~~l~~---------~~~~~~ivVv~~~~~---~~~~~~~~~~~~--~~~~~~~--~~~~~~sl~~~l~~~ 88 (217)
T TIGR00453 25 GGRPLLEHTLDAFLA---------HPAIDEVVVVVSPED---QEFFQKYLVARA--VPKIVAG--GDTRQDSVRNGLKAL 88 (217)
T ss_pred CCeEHHHHHHHHHhc---------CCCCCEEEEEEChHH---HHHHHHHhhcCC--cEEEeCC--CchHHHHHHHHHHhC
Confidence 455667777776654 222457777765321 122222211111 2333322 124667888999887
Q ss_pred -CCCEEEEEeCCCC-CCcchHHHHHHHHHHh
Q 019818 156 -RGELLLMLDADGA-TKVTDLEKLESQIHAV 184 (335)
Q Consensus 156 -~~d~v~~~DaD~~-~~~~~l~~l~~~~~~~ 184 (335)
..|+++++++|.. ++++.+.++++.+.++
T Consensus 89 ~~~d~vlv~~~D~P~i~~~~i~~li~~~~~~ 119 (217)
T TIGR00453 89 KDAEWVLVHDAARPFVPKELLDRLLEALRKA 119 (217)
T ss_pred CCCCEEEEccCccCCCCHHHHHHHHHHHhhC
Confidence 6799999999995 7999999999988653
|
Members of this protein family are 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase, the IspD protein of the deoxyxylulose pathway of IPP biosynthesis. In about twenty percent of bacterial genomes, this protein occurs as IspDF, a bifunctional fusion protein. |
| >PF01644 Chitin_synth_1: Chitin synthase; InterPro: IPR004834 This region is found commonly in chitin synthases classes I, II and III 2 | Back alignment and domain information |
|---|
Probab=92.58 E-value=2 Score=35.24 Aligned_cols=107 Identities=19% Similarity=0.180 Sum_probs=66.7
Q ss_pred cCCCC-ChHHHHHHHHHHHHHhhh--------cCCCCceEEEEEECCCC---cchHHHHHHHHH-------H--------
Q 019818 75 FNEEH-RLPGALDETLNYLQQRAA--------KDKSFTYEVLIIDDGSS---DGTKRVAFDFVR-------K-------- 127 (335)
Q Consensus 75 ~ne~~-~l~~~l~sl~~~~~~~~~--------~~~~~~~eiivvdd~s~---d~t~~~~~~~~~-------~-------- 127 (335)
|||++ .+.+||.++.+.+..+.. +....+.-|.||.||-. ..|.+.+..+.- .
T Consensus 2 YNEd~~ll~rTL~gv~~Ni~~l~~r~~s~~wG~d~WkkiVVcIv~DGr~ki~~~tl~~L~~lGvyq~gi~k~~v~~k~v~ 81 (163)
T PF01644_consen 2 YNEDEILLARTLHGVMKNIAHLCSRKRSKTWGKDAWKKIVVCIVSDGRAKINPRTLDLLAALGVYQEGIAKNQVNGKPVT 81 (163)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHhCCcCCcCCCCCCcEEEEEEEecCcccCCHHHHHHHHHcCCCcchhhhhhcCCCcce
Confidence 78854 467788888877665541 11234566777888855 345555544321 0
Q ss_pred ----------------------cCCCcEEEEE--cCCCCChHHHHHHHHHh----cCCCEEEEEeCCCCCCcchHHHHHH
Q 019818 128 ----------------------YTVDNVRIIL--LGRNHGKGEAIRKGMLH----SRGELLLMLDADGATKVTDLEKLES 179 (335)
Q Consensus 128 ----------------------~~~~~i~vi~--~~~~~Gk~~aln~g~~~----a~~d~v~~~DaD~~~~~~~l~~l~~ 179 (335)
.....+.++. -++|.||-..-..-+.. .+-++.+++|+-+.+.++.|-+|+.
T Consensus 82 aHifEyTtq~~i~~~~~~~~~~~~~~PvQ~ifclKe~N~kKinSHrWfFnaf~~~l~P~vcvllDvGT~P~~~siy~Lwk 161 (163)
T PF01644_consen 82 AHIFEYTTQLSIDSDLKFKGPEKNIVPVQIIFCLKEKNAKKINSHRWFFNAFCRQLQPNVCVLLDVGTKPGKDSIYHLWK 161 (163)
T ss_pred eEEEEecccceecccccccccccCCCCEEEEEEeccccccccchhhHHHHHHHhhcCCcEEEEEecCCCcCchHHHHHHh
Confidence 0011343322 23467776665554443 4679999999999999999999987
Q ss_pred HH
Q 019818 180 QI 181 (335)
Q Consensus 180 ~~ 181 (335)
.|
T Consensus 162 af 163 (163)
T PF01644_consen 162 AF 163 (163)
T ss_pred hC
Confidence 64
|
4.1.16 from EC. Chitin a linear homopolymer of GlcNAc residues, it is an important component of the cell wall of fungi and is synthesised on the cytoplasmic surface of the cell membrane by membrane bound chitin synthases []. ; GO: 0004100 chitin synthase activity, 0006031 chitin biosynthetic process |
| >COG2068 Uncharacterized MobA-related protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.30 E-value=1.7 Score=36.77 Aligned_cols=94 Identities=10% Similarity=0.183 Sum_probs=68.2
Q ss_pred cCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCcchHHHHHHHHHHcCCCcEEEEEcCC-CCChHHHHHHHHH
Q 019818 75 FNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGR-NHGKGEAIRKGML 153 (335)
Q Consensus 75 ~ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~vi~~~~-~~Gk~~aln~g~~ 153 (335)
++....+..+++..++ ..--++|+|.-.- ..+..+..... .+++++.+++ .+|.+..+..|++
T Consensus 28 ~~g~plv~~~~~~a~~----------a~~~~vivV~g~~---~~~~~~a~~~~---~~~~~v~npd~~~Gls~Sl~ag~~ 91 (199)
T COG2068 28 LDGKPLVRASAETALS----------AGLDRVIVVTGHR---VAEAVEALLAQ---LGVTVVVNPDYAQGLSTSLKAGLR 91 (199)
T ss_pred cCCCcHHHHHHHHHHh----------cCCCeEEEEeCcc---hhhHHHhhhcc---CCeEEEeCcchhhhHhHHHHHHHH
Confidence 4555666766666655 2234788887543 33333333222 2688888876 6899999999999
Q ss_pred hcCCC--EEEEEeCCCC-CCcchHHHHHHHHHHh
Q 019818 154 HSRGE--LLLMLDADGA-TKVTDLEKLESQIHAV 184 (335)
Q Consensus 154 ~a~~d--~v~~~DaD~~-~~~~~l~~l~~~~~~~ 184 (335)
.+.++ .++++-+|.. +.++.+.++++.+...
T Consensus 92 a~~~~~~~v~~~lgDmP~V~~~t~~rl~~~~~~~ 125 (199)
T COG2068 92 AADAEGDGVVLMLGDMPQVTPATVRRLIAAFRAR 125 (199)
T ss_pred hcccCCCeEEEEeCCCCCCCHHHHHHHHHhcccc
Confidence 99865 9999999997 8999999999999654
|
|
| >cd04181 NTP_transferase NTP_transferases catalyze the transfer of nucleotides onto phosphosugars | Back alignment and domain information |
|---|
Probab=92.25 E-value=1.6 Score=37.21 Aligned_cols=99 Identities=13% Similarity=0.112 Sum_probs=61.6
Q ss_pred EEeccCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCcchHHHHHHHHHHcCCCcEEEEEcCCCCChHHHHHH
Q 019818 71 IIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNHGKGEAIRK 150 (335)
Q Consensus 71 iip~~ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~vi~~~~~~Gk~~aln~ 150 (335)
++|+-+. ..+..+++++.+. . --+|+++.+...+...+.+.+... ....+.++..+...|.+.++..
T Consensus 23 ll~v~g~-pli~~~l~~l~~~---------g-~~~i~vv~~~~~~~i~~~~~~~~~--~~~~i~~~~~~~~~g~~~al~~ 89 (217)
T cd04181 23 LLPIAGK-PILEYIIERLARA---------G-IDEIILVVGYLGEQIEEYFGDGSK--FGVNIEYVVQEEPLGTAGAVRN 89 (217)
T ss_pred ccEECCe-eHHHHHHHHHHHC---------C-CCEEEEEeccCHHHHHHHHcChhh--cCceEEEEeCCCCCccHHHHHH
Confidence 4455454 7777777777652 1 356777766443333332222110 1124666666556888999999
Q ss_pred HHHhcCCCEEEEEeCCCCCCcchHHHHHHHHHH
Q 019818 151 GMLHSRGELLLMLDADGATKVTDLEKLESQIHA 183 (335)
Q Consensus 151 g~~~a~~d~v~~~DaD~~~~~~~l~~l~~~~~~ 183 (335)
++.....+.++++++|.....+ +.++++...+
T Consensus 90 ~~~~~~~~~~lv~~~D~~~~~~-~~~~~~~~~~ 121 (217)
T cd04181 90 AEDFLGDDDFLVVNGDVLTDLD-LSELLRFHRE 121 (217)
T ss_pred hhhhcCCCCEEEEECCeecCcC-HHHHHHHHHh
Confidence 9988877889999999987666 5555655443
|
Nucleotidyltransferases transfer nucleotides onto phosphosugars. The enzyme family includes Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase. The products are activated sugars that are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides. |
| >KOG1476 consensus Beta-1,3-glucuronyltransferase B3GAT1/SQV-8 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=91.99 E-value=2.8 Score=37.87 Aligned_cols=100 Identities=14% Similarity=0.145 Sum_probs=63.2
Q ss_pred CceEEEEEeccCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEECCC--CcchHHHHHHHHHHcCCCcEEEEEcCCCC
Q 019818 65 EKYISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGS--SDGTKRVAFDFVRKYTVDNVRIILLGRNH 142 (335)
Q Consensus 65 ~~~vsViip~~ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s--~d~t~~~~~~~~~~~~~~~i~vi~~~~~~ 142 (335)
.|.|-||-|+|+......+ |..+.+.+.+ -++..-|||.||+ +..+..++++..-. ..+ +..+.+.
T Consensus 86 ~~~iivVTPTY~R~~q~~~-LtRlanTL~~------V~nLhWIVVEd~~~~~p~v~~~L~rtgl~----yth-l~~~t~~ 153 (330)
T KOG1476|consen 86 LPTIIVVTPTYVRPVQAAE-LTRLANTLRL------VPNLHWIVVEDGEGTTPEVSGILRRTGLP----YTH-LVHKTPM 153 (330)
T ss_pred CccEEEEcccccchhHHHH-HHHHHHHHhh------cCCeeEEEEecCCCCCHHHHHHHHHcCCc----eEE-EeccCCC
Confidence 6889999999999855443 5666666654 3389999999984 33445555544222 222 3333344
Q ss_pred C-h----HHHHHHHHHhcC--------C-CEEEEEeCCCCCCcchHHH
Q 019818 143 G-K----GEAIRKGMLHSR--------G-ELLLMLDADGATKVTDLEK 176 (335)
Q Consensus 143 G-k----~~aln~g~~~a~--------~-d~v~~~DaD~~~~~~~l~~ 176 (335)
| + ...+|.|++..+ . -+|.|-|+|...+-+..++
T Consensus 154 ~~~~~rg~~qRn~aL~~ir~~~~~~~~~~GVVyFADDdN~YdleLF~e 201 (330)
T KOG1476|consen 154 GYKARRGWEQRNMALRWIRSRILRHHKLEGVVYFADDDNTYDLELFEE 201 (330)
T ss_pred CCccccchhHHHHHHHHHHHhcccccccceEEEEccCCcchhHHHHHH
Confidence 4 3 457888887754 2 4556668888777666655
|
|
| >PF11397 GlcNAc: Glycosyltransferase (GlcNAc); InterPro: IPR021067 GlcNAc is an enzyme that carries out the first glycosylation step of hydroxylated Skp1; it is found in the cytoplasm and results in a pentasaccharide-linked 'HyPro-143[, ] | Back alignment and domain information |
|---|
Probab=91.97 E-value=3.9 Score=38.04 Aligned_cols=111 Identities=14% Similarity=0.130 Sum_probs=73.8
Q ss_pred EEEEEeccCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCcchH--H----------------HHHHHHHH--
Q 019818 68 ISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTK--R----------------VAFDFVRK-- 127 (335)
Q Consensus 68 vsViip~~ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~--~----------------~~~~~~~~-- 127 (335)
|=|.|+.|... ....||.++++... .+.++.|=|++-...++.. . ........
T Consensus 2 IFvsiasyRD~-~c~~Tl~~~~~~A~------~P~r~~~gv~~Q~~~~~~~c~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 74 (343)
T PF11397_consen 2 IFVSIASYRDP-ECAPTLKDLFARAT------NPERLFVGVVWQHYEEDPPCLSEGAPMDPGVHAAREEECVYCFLASSA 74 (343)
T ss_pred EEEEEeeecCc-hHHHHHHHHHHhcC------CCceEEEEEEEEecCCCCcccccccccccccccccccchhhhhhhccc
Confidence 66788898885 48888888887543 2345555555543222221 0 00111110
Q ss_pred ----------cCCCcEEEEEcC--CCCChHHHHHHHHHhcCC-CEEEEEeCCCCCCcchHHHHHHHHHHhc
Q 019818 128 ----------YTVDNVRIILLG--RNHGKGEAIRKGMLHSRG-ELLLMLDADGATKVTDLEKLESQIHAVG 185 (335)
Q Consensus 128 ----------~~~~~i~vi~~~--~~~Gk~~aln~g~~~a~~-d~v~~~DaD~~~~~~~l~~l~~~~~~~~ 185 (335)
....+|++++.+ +.+|...|+..+.+.-+| +|++.+|+.+...++|=..|++.++.-+
T Consensus 75 ~~~~~~~~~~~~~~~Ir~~~~~~~~a~Gp~~AR~la~~l~~gE~y~LqiDSH~rF~~~WD~~li~~~~~~~ 145 (343)
T PF11397_consen 75 CAEWPDGALCLRSDQIRVIRVDASEARGPCWARYLAQKLYRGEDYYLQIDSHMRFVPGWDEILIEMLKSLR 145 (343)
T ss_pred ccccccccccccCCeEEEEEeCHHHCcChHHHHHHHHHHhCCCeEEEEEeccceeeccHHHHHHHHHHhcC
Confidence 112367777665 468888899988888765 9999999999999999888888887764
|
|
| >PRK13385 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=91.81 E-value=6.8 Score=33.98 Aligned_cols=95 Identities=14% Similarity=0.234 Sum_probs=58.6
Q ss_pred CCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCcchHHHHHHHHHHcCC--CcEEEEEcCCCCChHHHHHHHHH
Q 019818 76 NEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTV--DNVRIILLGRNHGKGEAIRKGML 153 (335)
Q Consensus 76 ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~--~~i~vi~~~~~~Gk~~aln~g~~ 153 (335)
++...|..+++.+.. ...--+|+|+.+. +....+++...++.. .++.++. ...+...++..|+.
T Consensus 28 ~gkpll~~~i~~~~~---------~~~~~~ivVv~~~---~~~~~~~~~~~~~~~~~~~~~~v~--~g~~r~~sv~~gl~ 93 (230)
T PRK13385 28 VGEPIFIHALRPFLA---------DNRCSKIIIVTQA---QERKHVQDLMKQLNVADQRVEVVK--GGTERQESVAAGLD 93 (230)
T ss_pred CCeEHHHHHHHHHHc---------CCCCCEEEEEeCh---hhHHHHHHHHHhcCcCCCceEEcC--CCchHHHHHHHHHH
Confidence 556677777777654 2223467776643 222333333333321 1344443 22356688888888
Q ss_pred hcC-CCEEEEEeCCCC-CCcchHHHHHHHHHHh
Q 019818 154 HSR-GELLLMLDADGA-TKVTDLEKLESQIHAV 184 (335)
Q Consensus 154 ~a~-~d~v~~~DaD~~-~~~~~l~~l~~~~~~~ 184 (335)
... .+++++.|+|.. ++++.+.++++.+.+.
T Consensus 94 ~~~~~d~vli~~~d~P~i~~~~i~~li~~~~~~ 126 (230)
T PRK13385 94 RIGNEDVILVHDGARPFLTQDIIDRLLEGVAKY 126 (230)
T ss_pred hccCCCeEEEccCCCCCCCHHHHHHHHHHHhhC
Confidence 763 578999999996 5999999999988653
|
|
| >TIGR00466 kdsB 3-deoxy-D-manno-octulosonate cytidylyltransferase | Back alignment and domain information |
|---|
Probab=91.72 E-value=3.4 Score=36.21 Aligned_cols=92 Identities=7% Similarity=0.132 Sum_probs=53.5
Q ss_pred EeccCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCcchHHHHHHHHHHcCCCcEEEEEc-CCCCChHHHHHH
Q 019818 72 IPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILL-GRNHGKGEAIRK 150 (335)
Q Consensus 72 ip~~ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~vi~~-~~~~Gk~~aln~ 150 (335)
++. ++...|..+++.+.. .. --+|+|+.|. +. +.+..+.+ ++.++.. +...|-......
T Consensus 19 ~~l-~GkPli~~~le~~~~---------~~-~d~VvVvt~~--~~----i~~~~~~~---g~~~v~~~~~~~~Gt~r~~~ 78 (238)
T TIGR00466 19 EDI-FGKPMIVHVAENANE---------SG-ADRCIVATDD--ES----VAQTCQKF---GIEVCMTSKHHNSGTERLAE 78 (238)
T ss_pred ccc-CCcCHHHHHHHHHHh---------CC-CCeEEEEeCH--HH----HHHHHHHc---CCEEEEeCCCCCChhHHHHH
Confidence 444 456777777777654 22 3567777652 22 23333333 3444432 222232222233
Q ss_pred HHHh---cCCCEEEEEeCCCC-CCcchHHHHHHHHHH
Q 019818 151 GMLH---SRGELLLMLDADGA-TKVTDLEKLESQIHA 183 (335)
Q Consensus 151 g~~~---a~~d~v~~~DaD~~-~~~~~l~~l~~~~~~ 183 (335)
+++. ...|+|+++|+|.. ++++.+.++++.+.+
T Consensus 79 ~~~~l~~~~~d~Vli~~gD~Pli~~~~I~~li~~~~~ 115 (238)
T TIGR00466 79 VVEKLALKDDERIVNLQGDEPFIPKEIIRQVADNLAT 115 (238)
T ss_pred HHHHhCCCCCCEEEEEcCCcCcCCHHHHHHHHHHHhc
Confidence 3332 24689999999997 799999999998854
|
|
| >TIGR03310 matur_ygfJ molybdenum hydroxylase accessory protein, YgfJ family | Back alignment and domain information |
|---|
Probab=91.70 E-value=1.1 Score=37.38 Aligned_cols=96 Identities=16% Similarity=0.200 Sum_probs=62.2
Q ss_pred EeccCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCcchHHHHHHHHHHcCCCcEEEEEcCC-CCChHHHHHH
Q 019818 72 IPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGR-NHGKGEAIRK 150 (335)
Q Consensus 72 ip~~ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~vi~~~~-~~Gk~~aln~ 150 (335)
+|. +....+..+++.+.+ .. .-+|+|+.+...+ +..+.+...+ ++.++..+. ..|...++..
T Consensus 20 l~~-~g~pll~~~i~~l~~---------~~-~~~iivv~~~~~~---~~~~~~~~~~---~v~~v~~~~~~~g~~~si~~ 82 (188)
T TIGR03310 20 LPY-KGKTILEHVVDNALR---------LF-FDEVILVLGHEAD---ELVALLANHS---NITLVHNPQYAEGQSSSIKL 82 (188)
T ss_pred ccc-CCeeHHHHHHHHHHH---------cC-CCcEEEEeCCcHH---HHHHHhccCC---CeEEEECcChhcCHHHHHHH
Confidence 344 455667777766655 21 3467776553322 2233332222 466666543 3578888999
Q ss_pred HHH-hcCCCEEEEEeCCCC-CCcchHHHHHHHHHHh
Q 019818 151 GML-HSRGELLLMLDADGA-TKVTDLEKLESQIHAV 184 (335)
Q Consensus 151 g~~-~a~~d~v~~~DaD~~-~~~~~l~~l~~~~~~~ 184 (335)
|++ ....+.++++++|.. ++++.+.++++.+.+.
T Consensus 83 ~l~~~~~~~~vlv~~~D~P~i~~~~i~~l~~~~~~~ 118 (188)
T TIGR03310 83 GLELPVQSDGYLFLLGDQPFVTPDIIQLLLEAFALK 118 (188)
T ss_pred HhcCCCCCCEEEEEeCCcCCCCHHHHHHHHHHHHhC
Confidence 988 455789999999995 6899999999887654
|
Members of this protein family are probable accessory proteins for the biosynthesis of enzymes related to xanthine dehydrogenase. Comparative genomics suggests a role in the maturation of selenium-dependent molybdenum hydroxylases, although a tenuous alternative hypothesis is a role for this protein (with a requirement for SelD, the selenium donor protein in the selenocysteine and selenouridine biosynthesis pathways) metabolizing a selenium-containing substrate such as selenate. |
| >PRK14352 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=91.08 E-value=9.7 Score=37.15 Aligned_cols=98 Identities=11% Similarity=0.093 Sum_probs=60.9
Q ss_pred EEeccCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCcchHHHHHHHHHHcCCCcEEEEEcCCCCChHHHHHH
Q 019818 71 IIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNHGKGEAIRK 150 (335)
Q Consensus 71 iip~~ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~vi~~~~~~Gk~~aln~ 150 (335)
++|..+. ..|..+|+++... ..-+++++.....+...+. +....+ .+.++..+...|.+.++..
T Consensus 26 llpi~gk-pli~~~l~~l~~~----------g~~~iivvv~~~~~~i~~~---~~~~~~--~~~~~~~~~~~Gt~~si~~ 89 (482)
T PRK14352 26 LHTLAGR-SMLGHVLHAAAGL----------APQHLVVVVGHDRERVAPA---VAELAP--EVDIAVQDEQPGTGHAVQC 89 (482)
T ss_pred eceeCCc-cHHHHHHHHHHhc----------CCCcEEEEECCCHHHHHHH---hhccCC--ccEEEeCCCCCCcHHHHHH
Confidence 5566553 4667777766541 1236666654332222222 211112 3555555556788889999
Q ss_pred HHHhcC---CCEEEEEeCCC-CCCcchHHHHHHHHHHh
Q 019818 151 GMLHSR---GELLLMLDADG-ATKVTDLEKLESQIHAV 184 (335)
Q Consensus 151 g~~~a~---~d~v~~~DaD~-~~~~~~l~~l~~~~~~~ 184 (335)
|+.... .+.++++++|. .+.++.+.++++...+.
T Consensus 90 al~~l~~~~~~~vlV~~gD~P~~~~~~l~~li~~~~~~ 127 (482)
T PRK14352 90 ALEALPADFDGTVVVTAGDVPLLDGETLADLVATHTAE 127 (482)
T ss_pred HHHHhccCCCCeEEEEeCCeeccCHHHHHHHHHHHHhc
Confidence 988764 37899999998 47888999999877553
|
|
| >cd02503 MobA MobA catalyzes the formation of molybdopterin guanine dinucleotide | Back alignment and domain information |
|---|
Probab=91.04 E-value=1.2 Score=36.89 Aligned_cols=87 Identities=17% Similarity=0.142 Sum_probs=60.5
Q ss_pred EeccCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCcchHHHHHHHHHHcCCCcEEEEEcC-CCCChHHHHHH
Q 019818 72 IPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLG-RNHGKGEAIRK 150 (335)
Q Consensus 72 ip~~ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~vi~~~-~~~Gk~~aln~ 150 (335)
+|. +....|..+++.+... .-+|+|+.+...+. . ... ++.++..+ ...|...++..
T Consensus 21 l~~-~g~~ll~~~i~~l~~~-----------~~~iivv~~~~~~~----~----~~~---~~~~v~~~~~~~G~~~si~~ 77 (181)
T cd02503 21 LEL-GGKPLLEHVLERLKPL-----------VDEVVISANRDQER----Y----ALL---GVPVIPDEPPGKGPLAGILA 77 (181)
T ss_pred eEE-CCEEHHHHHHHHHHhh-----------cCEEEEECCCChHH----H----hhc---CCcEeeCCCCCCCCHHHHHH
Confidence 344 4566777777766542 24677776533222 1 111 45666554 35788899999
Q ss_pred HHHhcCCCEEEEEeCCCC-CCcchHHHHHHHH
Q 019818 151 GMLHSRGELLLMLDADGA-TKVTDLEKLESQI 181 (335)
Q Consensus 151 g~~~a~~d~v~~~DaD~~-~~~~~l~~l~~~~ 181 (335)
|++....+.++++.+|.. ++++.+..+++.+
T Consensus 78 ~l~~~~~~~vlv~~~D~P~i~~~~i~~l~~~~ 109 (181)
T cd02503 78 ALRAAPADWVLVLACDMPFLPPELLERLLAAA 109 (181)
T ss_pred HHHhcCCCeEEEEeCCcCCCCHHHHHHHHHhh
Confidence 999988899999999996 6899999998877
|
The prokaryotic enzyme molybdopterin-guanine dinucleotide biosynthesis protein A (MobA). All mononuclear molybdoenzymes bind molybdenum in complex with an organic cofactor termed molybdopterin (MPT). In many bacteria, including Escherichia coli, molybdopterin can be further modified by attachment of a GMP group to the terminal phosphate of molybdopterin to form molybdopterin guanine dinucleotide (MGD). This GMP attachment step is catalyzed by MobA, by linking a guanosine 5'-phosphate to MPT forming molybdopterin guanine dinucleotide. This reaction requires GTP, MgCl2, and the MPT form of the cofactor. It is a reaction unique to prokaryotes, and therefore may represent a potential drug target. |
| >PF05045 RgpF: Rhamnan synthesis protein F; InterPro: IPR007739 This family consists of a group of proteins which are related to the Streptococcal rhamnose-glucose polysaccharide assembly protein (RgpF) | Back alignment and domain information |
|---|
Probab=90.54 E-value=13 Score=36.58 Aligned_cols=112 Identities=19% Similarity=0.271 Sum_probs=66.6
Q ss_pred CCceEEEEEeccCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCcchHHHHHHHHHHcCC-CcEEEEEcCCCC
Q 019818 64 AEKYISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTV-DNVRIILLGRNH 142 (335)
Q Consensus 64 ~~~~vsViip~~ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~-~~i~vi~~~~~~ 142 (335)
..++|.|++=+|-.+ .++++++.+.+ .+..++++|-.+. ++..+.+++..++.+. .++.|+.. +|+
T Consensus 263 ~~~kiav~lHv~Y~D-Ll~E~l~~l~~---------~p~~~Dl~ITt~~--~~~~~~i~~~l~~~~~~~~~~v~vv-~Nr 329 (498)
T PF05045_consen 263 SKKKIAVHLHVFYPD-LLEEILDYLAN---------IPFPYDLFITTDS--EEKKEEIEEILAKRPGFKNAEVRVV-ENR 329 (498)
T ss_pred CCCcEEEEEEEEcHh-hHHHHHHHHHh---------CCCCeEEEEECCc--hhhHHHHHHHHHhccCCCceEEEEe-CCC
Confidence 457899999999874 45566665544 5667898887542 2334455555444442 25666665 578
Q ss_pred ChH-HHHHHHHH----hcCCCEEEEEeCCCCCC--------------------cchHHHHHHHHHHhcccc
Q 019818 143 GKG-EAIRKGML----HSRGELLLMLDADGATK--------------------VTDLEKLESQIHAVGRKE 188 (335)
Q Consensus 143 Gk~-~aln~g~~----~a~~d~v~~~DaD~~~~--------------------~~~l~~l~~~~~~~~~~~ 188 (335)
|.- +++-.++. ..+.|+|+.+..--... ++.+.++++.|+++++.|
T Consensus 330 GRDi~pfLv~~~~~l~~~~YD~v~~~HtKKS~~~~~~~g~~wr~~l~~~LL~s~~~v~~Il~~F~~~p~lG 400 (498)
T PF05045_consen 330 GRDILPFLVGLKDELLDSKYDYVCHLHTKKSPHNDRSDGDSWRRELLDNLLGSKEYVDNILSAFEDDPRLG 400 (498)
T ss_pred CccHHHHHHHHHHHhccCCccEEEEEEcccCcCcCcchHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCce
Confidence 833 33332332 24679999987654443 233555666666666554
|
Rhamnan backbones are found in several O-polysaccharides found in phytopathogenic bacteria and are regarded as pathogenic factors []. |
| >KOG1413 consensus N-acetylglucosaminyltransferase I [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=90.25 E-value=0.91 Score=41.59 Aligned_cols=112 Identities=10% Similarity=0.133 Sum_probs=78.3
Q ss_pred CCCceEEEEEeccCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCcchHHHHHHHHHHcC------C--CcEE
Q 019818 63 PAEKYISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYT------V--DNVR 134 (335)
Q Consensus 63 ~~~~~vsViip~~ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~------~--~~i~ 134 (335)
..+|-+.||+-+.|....+.++++.++..-. ....+-|||--|++..++.+.++.+..... + ..|.
T Consensus 64 ~~~~v~pvvVf~csR~~~lr~~v~kll~yrP------saekfpiiVSQD~~~e~vk~~~~~~g~~v~~i~~~~h~~~ei~ 137 (411)
T KOG1413|consen 64 NWPPVIPVVVFACSRADALRRHVKKLLEYRP------SAEKFPIIVSQDCEKEAVKKKLLSYGSDVSHIQHPMHLKDEIS 137 (411)
T ss_pred CCCCceeEEEEecCcHHHHHHHHHHHHHhCc------chhhcCEEEeccCCcHHHHHHHHHhccchhhhcCccccccccc
Confidence 4456789999999999999999999988421 233577888888888888888877655322 0 0122
Q ss_pred EEEcCC-CC-------ChHHHHHHHHHhcCCCEEEEEeCCCCCCcchHHHHHHH
Q 019818 135 IILLGR-NH-------GKGEAIRKGMLHSRGELLLMLDADGATKVTDLEKLESQ 180 (335)
Q Consensus 135 vi~~~~-~~-------Gk~~aln~g~~~a~~d~v~~~DaD~~~~~~~l~~l~~~ 180 (335)
|-..+. .. ...-|+|..+..-+.+.++++-+|....|++...+...
T Consensus 138 v~~~~~k~~~Yy~IarHYkwAL~q~F~~~~~s~vii~eDDl~iapDFF~YF~~t 191 (411)
T KOG1413|consen 138 VPPRHKKFNAYYKIARHYKWALNQLFIVFRESRVIITEDDLNIAPDFFSYFRNT 191 (411)
T ss_pred cCCcccccchhHHHHHHHHHHHhhHHhhcCCceeEEecchhhhhhHHHHHHHHH
Confidence 211111 11 13457777777778899999999999999988776654
|
|
| >PF00483 NTP_transferase: Nucleotidyl transferase This Prosite entry is only a sub-family of the Pfam entry | Back alignment and domain information |
|---|
Probab=90.25 E-value=0.73 Score=40.34 Aligned_cols=101 Identities=13% Similarity=0.104 Sum_probs=66.7
Q ss_pred EEeccCCCCChHHHHHHHHHHHHHhhhcCCCCceEE-EEEECCCCcchHHHHHHHHHHcC--CCcEEEEEcCCCCChHHH
Q 019818 71 IIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEV-LIIDDGSSDGTKRVAFDFVRKYT--VDNVRIILLGRNHGKGEA 147 (335)
Q Consensus 71 iip~~ne~~~l~~~l~sl~~~~~~~~~~~~~~~~ei-ivvdd~s~d~t~~~~~~~~~~~~--~~~i~vi~~~~~~Gk~~a 147 (335)
++|..|..+.|..+|+.+.+ ...-++ +|+.....+. +.+...... ..++.++..+...|-+.|
T Consensus 24 ll~i~g~~pli~~~l~~l~~----------~g~~~ii~V~~~~~~~~----i~~~~~~~~~~~~~i~~i~~~~~~Gta~a 89 (248)
T PF00483_consen 24 LLPIGGKYPLIDYVLENLAN----------AGIKEIIVVVNGYKEEQ----IEEHLGSGYKFGVKIEYIVQPEPLGTAGA 89 (248)
T ss_dssp GSEETTEEEHHHHHHHHHHH----------TTCSEEEEEEETTTHHH----HHHHHTTSGGGTEEEEEEEESSSSCHHHH
T ss_pred cceecCCCcchhhhhhhhcc----------cCCceEEEEEeeccccc----ccccccccccccccceeeecccccchhHH
Confidence 56676765667777777665 224564 4444332222 222222222 124788888888899999
Q ss_pred HHHHHHhcCCCE----EEEEeCCCCCCcchHHHHHHHHHHhcc
Q 019818 148 IRKGMLHSRGEL----LLMLDADGATKVTDLEKLESQIHAVGR 186 (335)
Q Consensus 148 ln~g~~~a~~d~----v~~~DaD~~~~~~~l~~l~~~~~~~~~ 186 (335)
+..+......+. ++++.+|...+. .+..+++...+...
T Consensus 90 l~~a~~~i~~~~~~~~~lv~~gD~i~~~-~~~~~l~~~~~~~~ 131 (248)
T PF00483_consen 90 LLQALDFIEEEDDDEDFLVLNGDIIFDD-DLQDMLEFHRESNA 131 (248)
T ss_dssp HHHTHHHHTTSEE-SEEEEETTEEEEST-THHHHHHHHHHHSS
T ss_pred HHHHHHHhhhccccceEEEEeccccccc-hhhhHHHhhhcccc
Confidence 999999988765 999999998877 67788877766543
|
; InterPro: IPR005835 Nucleotidyl transferases transfer nucleotides from one compound to another. This domain is found in a number of enzymes that transfer nucleotides onto phosphosugars.; GO: 0016779 nucleotidyltransferase activity, 0009058 biosynthetic process; PDB: 1YP2_C 1YP4_D 1YP3_B 1H5S_D 1H5R_C 1H5T_C 2E3D_B 1JYL_C 1JYK_A 1MP5_C .... |
| >cd06915 NTP_transferase_WcbM_like WcbM_like is a subfamily of nucleotidyl transferases | Back alignment and domain information |
|---|
Probab=90.08 E-value=2.8 Score=35.73 Aligned_cols=98 Identities=17% Similarity=0.197 Sum_probs=60.2
Q ss_pred EEeccCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCcchHHHHHHHHHHc-CCCcEEEEEcCCCCChHHHHH
Q 019818 71 IIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKY-TVDNVRIILLGRNHGKGEAIR 149 (335)
Q Consensus 71 iip~~ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~-~~~~i~vi~~~~~~Gk~~aln 149 (335)
++|.-+. ..|...++.+.+ .. --+|+|+.+...+...+. +.... ....+.+.......|.+.++.
T Consensus 23 ll~i~g~-pli~~~l~~l~~---------~g-~~~v~vv~~~~~~~i~~~---~~~~~~~~~~~~~~~~~~~~G~~~~l~ 88 (223)
T cd06915 23 LAPVAGR-PFLEYLLEYLAR---------QG-ISRIVLSVGYLAEQIEEY---FGDGYRGGIRIYYVIEPEPLGTGGAIK 88 (223)
T ss_pred ccEECCc-chHHHHHHHHHH---------CC-CCEEEEEcccCHHHHHHH---HcCccccCceEEEEECCCCCcchHHHH
Confidence 4555453 667777777655 21 236777765333322222 22111 111344445455688888999
Q ss_pred HHHHhcCCCEEEEEeCCCCCCcchHHHHHHHHHH
Q 019818 150 KGMLHSRGELLLMLDADGATKVTDLEKLESQIHA 183 (335)
Q Consensus 150 ~g~~~a~~d~v~~~DaD~~~~~~~l~~l~~~~~~ 183 (335)
.|++....+.++++++|...+. .+.+++..+.+
T Consensus 89 ~a~~~~~~~~~lv~~~D~~~~~-~~~~~l~~~~~ 121 (223)
T cd06915 89 NALPKLPEDQFLVLNGDTYFDV-DLLALLAALRA 121 (223)
T ss_pred HHHhhcCCCCEEEEECCcccCC-CHHHHHHHHHh
Confidence 9999887788999999997754 57777777654
|
WcbM protein of Burkholderia mallei is involved in the biosynthesis, export or translocation of capsule. It is a subfamily of nucleotidyl transferases that transfer nucleotides onto phosphosugars. |
| >cd02509 GDP-M1P_Guanylyltransferase GDP-M1P_Guanylyltransferase catalyzes the formation of GDP-Mannose | Back alignment and domain information |
|---|
Probab=90.07 E-value=5.1 Score=35.97 Aligned_cols=95 Identities=17% Similarity=0.188 Sum_probs=59.5
Q ss_pred EEeccCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCcchHHHHHHHHHH-cCCCcEEEEEcCCCCChHHHHH
Q 019818 71 IIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRK-YTVDNVRIILLGRNHGKGEAIR 149 (335)
Q Consensus 71 iip~~ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~-~~~~~i~vi~~~~~~Gk~~aln 149 (335)
.+|..++...|..+++++... ...-+|+|+.+.. -.+.+++.... .+ ++.++..+...|-+.|+.
T Consensus 26 ll~l~g~~~li~~~l~~l~~~---------~~~~~i~vvt~~~---~~~~v~~~l~~~~~--~~~ii~ep~~~gTa~ai~ 91 (274)
T cd02509 26 FLKLFGDKSLLQQTLDRLKGL---------VPPDRILVVTNEE---YRFLVREQLPEGLP--EENIILEPEGRNTAPAIA 91 (274)
T ss_pred EeEcCCCCcHHHHHHHHHhcC---------CCCCcEEEEechH---HHHHHHHHHhhcCC--CceEEECCCCCCcHHHHH
Confidence 577777677777777776541 1234777777531 22233333222 23 577777777788888888
Q ss_pred HHHHhcC----CCEEEEEeCCCCCCc-chHHHHHH
Q 019818 150 KGMLHSR----GELLLMLDADGATKV-TDLEKLES 179 (335)
Q Consensus 150 ~g~~~a~----~d~v~~~DaD~~~~~-~~l~~l~~ 179 (335)
.+..... .+.++++.+|..... +.+.++++
T Consensus 92 ~a~~~~~~~~~~~~vlVl~~D~~i~~~~~f~~~l~ 126 (274)
T cd02509 92 LAALYLAKRDPDAVLLVLPSDHLIEDVEAFLKAVK 126 (274)
T ss_pred HHHHHHHhcCCCCeEEEecchhcccCHHHHHHHHH
Confidence 8877653 479999999987753 44444443
|
GDP-mannose-1-phosphate guanylyltransferase, also called GDP-mannose pyrophosphorylase (GDP-MP), catalyzes the formation of GDP-Mannose from mannose-1-phosphate and GTP. Mannose is a key monosaccharide for glycosylation of proteins and lipids. GDP-Mannose is the activated donor for mannosylation of various biomolecules. This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase and mannose-1-phosphate guanylyltransferase. This CD covers the N-terminal GDP-mannose-1-phosphate guanylyltransferase domain, whereas the isomerase function is located at the C-terminal half. GDP-MP is a member of the nucleotidyltransferase family of enzymes. |
| >cd02518 GT2_SpsF SpsF is a glycosyltrnasferase implicated in the synthesis of the spore coat | Back alignment and domain information |
|---|
Probab=89.97 E-value=3.4 Score=35.87 Aligned_cols=98 Identities=10% Similarity=0.113 Sum_probs=57.9
Q ss_pred EEeccCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCcchHHHHHHHHHHcCCCcEEEEEcCCCCChHHHHHH
Q 019818 71 IIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNHGKGEAIRK 150 (335)
Q Consensus 71 iip~~ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~vi~~~~~~Gk~~aln~ 150 (335)
+.|. ++...+..+++.+.+. ...-+|+|+.+.... . +.+.+..... ++.++..+...+.+ ....
T Consensus 18 ll~l-~Gkpli~~~i~~l~~~---------~~~~~ivVv~~~~~~-~-~~i~~~~~~~---~v~~v~~~~~~~l~-~~~~ 81 (233)
T cd02518 18 LKPL-GGKPLLEHLLDRLKRS---------KLIDEIVIATSTNEE-D-DPLEALAKKL---GVKVFRGSEEDVLG-RYYQ 81 (233)
T ss_pred cccc-CCccHHHHHHHHHHhC---------CCCCeEEEECCCCcc-c-HHHHHHHHHc---CCeEEECCchhHHH-HHHH
Confidence 4444 4556777777777551 112467776654431 1 1222222222 46677665432222 2233
Q ss_pred HHHhcCCCEEEEEeCCCC-CCcchHHHHHHHHHHh
Q 019818 151 GMLHSRGELLLMLDADGA-TKVTDLEKLESQIHAV 184 (335)
Q Consensus 151 g~~~a~~d~v~~~DaD~~-~~~~~l~~l~~~~~~~ 184 (335)
+++....|+++++++|.. ++++.++++++.+.+.
T Consensus 82 ~~~~~~~d~vli~~~D~P~i~~~~i~~li~~~~~~ 116 (233)
T cd02518 82 AAEEYNADVVVRITGDCPLIDPEIIDAVIRLFLKS 116 (233)
T ss_pred HHHHcCCCEEEEeCCCCCCCCHHHHHHHHHHHHhC
Confidence 444456799999999996 6999999999988654
|
Spore coat polysaccharide biosynthesis protein F (spsF) is a glycosyltransferase implicated in the synthesis of the spore coat in a variety of bacteria challenged by stress as starvation. The spsF gene is expressed in the late stage of coat development responsible for a terminal step in coat formation that involves the glycosylation of the coat. SpsF gene mutation resulted in spores that appeared normal. But, the spores tended to aggregate and had abnormal adsorption properties, indicating a surface alteration. |
| >TIGR03552 F420_cofC 2-phospho-L-lactate guanylyltransferase CofC | Back alignment and domain information |
|---|
Probab=89.63 E-value=2.9 Score=35.15 Aligned_cols=50 Identities=20% Similarity=0.269 Sum_probs=40.3
Q ss_pred cEEEEEcCCCCChHHHHHHHHHhcC--CCEEEEEeCCCC-CCcchHHHHHHHHH
Q 019818 132 NVRIILLGRNHGKGEAIRKGMLHSR--GELLLMLDADGA-TKVTDLEKLESQIH 182 (335)
Q Consensus 132 ~i~vi~~~~~~Gk~~aln~g~~~a~--~d~v~~~DaD~~-~~~~~l~~l~~~~~ 182 (335)
++.++..+. .|...++..|++... ++.++++-+|.. +.++.+.++++.+.
T Consensus 65 ~v~~i~~~~-~G~~~si~~al~~~~~~~~~vlv~~~D~P~l~~~~i~~l~~~~~ 117 (195)
T TIGR03552 65 GAPVLRDPG-PGLNNALNAALAEAREPGGAVLILMADLPLLTPRELKRLLAAAT 117 (195)
T ss_pred CCEEEecCC-CCHHHHHHHHHHHhhccCCeEEEEeCCCCCCCHHHHHHHHHhcc
Confidence 466776654 489999999998754 468999999996 69999999998774
|
Members of this protein family are the CofC enzyme of coenzyme F420 biosynthesis. |
| >PLN03180 reversibly glycosylated polypeptide; Provisional | Back alignment and domain information |
|---|
Probab=89.52 E-value=0.38 Score=43.80 Aligned_cols=87 Identities=17% Similarity=0.273 Sum_probs=52.6
Q ss_pred ceEEEEEeccCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCcchHHHHHHHHHHcCCCcEEEEEcCC-C---
Q 019818 66 KYISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGR-N--- 141 (335)
Q Consensus 66 ~~vsViip~~ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~vi~~~~-~--- 141 (335)
..+.||||+-.+ .++|++....+. ++++|+|-|+..-.+..+-+. ....+...++ +
T Consensus 11 ~evdIVi~TI~~----~~fL~~~r~~l~---------~~h~iiV~d~D~~~~~~~~~G-------~d~~vy~r~d~~~~L 70 (346)
T PLN03180 11 DELDIVIPTIRN----LDFLEMWRPFFQ---------PYHLIIVQDGDPSKEIKVPEG-------FDYELYNRNDINRIL 70 (346)
T ss_pred CcceEEEeccCc----hhHHHHHHHhcC---------cccEEEEecCCcccceeccCC-------CceeecCHHHHHhhh
Confidence 459999999555 467777777443 567788777433222111110 1122211111 0
Q ss_pred --------CChHHHHHHHHHhcCCCEEEEEeCCCCCCcc
Q 019818 142 --------HGKGEAIRKGMLHSRGELLLMLDADGATKVT 172 (335)
Q Consensus 142 --------~Gk~~aln~g~~~a~~d~v~~~DaD~~~~~~ 172 (335)
..-.+.++.|+-.++.+|++.+|.|+.+..+
T Consensus 71 g~~~~~Ip~~~~a~R~fGyL~s~~~yivsiDDD~~Pa~d 109 (346)
T PLN03180 71 GPKASCISFKDSACRCFGYLVSKKKYIFTIDDDCFVAKD 109 (346)
T ss_pred cccccccccCcccchhhhheeecceEEEEECCCCCCCCC
Confidence 1122357888888889999999999998777
|
|
| >cd06422 NTP_transferase_like_1 NTP_transferase_like_1 is a member of the nucleotidyl transferase family | Back alignment and domain information |
|---|
Probab=89.34 E-value=3 Score=35.84 Aligned_cols=97 Identities=14% Similarity=0.004 Sum_probs=58.8
Q ss_pred EEeccCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCcchHHHHHHHHHHcCCCcEEEEEcC-CCCChHHHHH
Q 019818 71 IIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLG-RNHGKGEAIR 149 (335)
Q Consensus 71 iip~~ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~vi~~~-~~~Gk~~aln 149 (335)
++|+-+. ..|...++++.+. .--+|+++.....+...+.+.+ +.....+.+.... +..|-+.++.
T Consensus 24 llpi~g~-~li~~~l~~l~~~----------gi~~i~iv~~~~~~~i~~~~~~---~~~~~~i~~~~~~~~~~g~~~~l~ 89 (221)
T cd06422 24 LVPVAGK-PLIDHALDRLAAA----------GIRRIVVNTHHLADQIEAHLGD---SRFGLRITISDEPDELLETGGGIK 89 (221)
T ss_pred eeeECCE-EHHHHHHHHHHHC----------CCCEEEEEccCCHHHHHHHHhc---ccCCceEEEecCCCcccccHHHHH
Confidence 5666555 7777777777652 2346666655433333333322 1221234444433 3468888999
Q ss_pred HHHHhcCCCEEEEEeCCCCCCcchHHHHHHHHH
Q 019818 150 KGMLHSRGELLLMLDADGATKVTDLEKLESQIH 182 (335)
Q Consensus 150 ~g~~~a~~d~v~~~DaD~~~~~~~l~~l~~~~~ 182 (335)
.++.....+.++++.+|...+.+.. +++....
T Consensus 90 ~~~~~~~~~~~lv~~~D~i~~~~~~-~~~~~~~ 121 (221)
T cd06422 90 KALPLLGDEPFLVVNGDILWDGDLA-PLLLLHA 121 (221)
T ss_pred HHHHhcCCCCEEEEeCCeeeCCCHH-HHHHHHH
Confidence 9999876688999999998877644 4555443
|
This is a subfamily of nucleotidyl transferases. Nucleotidyl transferases transfer nucleotides onto phosphosugars. The activated sugars are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides. Other subfamilies of nucleotidyl transferases include Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase. |
| >COG1209 RfbA dTDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=89.16 E-value=4.5 Score=36.02 Aligned_cols=186 Identities=11% Similarity=0.054 Sum_probs=105.4
Q ss_pred EEeccCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCcchHHHHHHHHHHc--CCCcEEEEEcCCCCChHHHH
Q 019818 71 IIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKY--TVDNVRIILLGRNHGKGEAI 148 (335)
Q Consensus 71 iip~~ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~--~~~~i~vi~~~~~~Gk~~al 148 (335)
++|+|+- +.|.-+++.+.. ..--+|+||.. ++.....+++.-.. -+.++++...++..|.+.|+
T Consensus 25 LlpV~~K-Pmi~y~l~~L~~----------aGI~dI~II~~---~~~~~~~~~llGdgs~~gv~itY~~Q~~p~GlA~Av 90 (286)
T COG1209 25 LLPVYDK-PMIYYPLETLML----------AGIRDILIVVG---PEDKPTFKELLGDGSDFGVDITYAVQPEPDGLAHAV 90 (286)
T ss_pred cceecCc-chhHhHHHHHHH----------cCCceEEEEec---CCchhhhhhhhcCccccCcceEEEecCCCCcHHHHH
Confidence 7899886 567777777765 33457777754 22222233332220 12379999999999999999
Q ss_pred HHHHHhcCCCEEEEEeCCCCCCcchHHHHHHHHHHhccccccCCCcccccccccccCCCeeeeecchhhhhHhhhhhhhh
Q 019818 149 RKGMLHSRGELLLMLDADGATKVTDLEKLESQIHAVGRKEYNHGDSVTVDSTFRISDIPIAAFGSRAHLEEKALATRKWY 228 (335)
Q Consensus 149 n~g~~~a~~d~v~~~DaD~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~g~~~~~~~~~~~~~~~~ 228 (335)
-.|-.....|=++++=+|..+.. -+.+++..+.+....+.+....+.+.+.+ .+|-=..
T Consensus 91 ~~a~~fv~~~~f~l~LGDNi~~~-~l~~~~~~~~~~~~ga~i~~~~V~dP~rf------GV~e~d~-------------- 149 (286)
T COG1209 91 LIAEDFVGDDDFVLYLGDNIFQD-GLSELLEHFAEEGSGATILLYEVDDPSRY------GVVEFDE-------------- 149 (286)
T ss_pred HHHHhhcCCCceEEEecCceecc-ChHHHHHHHhccCCCcEEEEEEcCCcccc------eEEEEcC--------------
Confidence 99999998544555556666666 88888988876444433222222222111 1110000
Q ss_pred HHHHHHHHHHHHHHHh---CCCCccCCCceeeeeHHHHHHhhhhhhh-ccccchHHHHHHhHHcCCCEEEeeeE
Q 019818 229 RNFLMKGFHLVVILTA---GPGIRDTQCGFKMFTRAAARKLFTNIRL-KRWCFDVELVYLCKRFGIPIIEISVN 298 (335)
Q Consensus 229 ~~~~~~~~~~~~~~~~---~~~~~~~~~g~~~~~r~~l~~i~~~~~~-~~~~~D~el~~r~~~~G~~i~~~p~~ 298 (335)
.. ...+..- ..+-.....|..+|+.++++.+-.-..+ -+-.|=.|..-....+|..+.++...
T Consensus 150 -----~~--~v~~l~EKP~~P~SNlAvtGlY~~d~~Vf~~~~~ikPS~RGElEITd~i~~~i~~G~~~~~~~~~ 216 (286)
T COG1209 150 -----DG--KVIGLEEKPKEPKSNLAVTGLYFYDPSVFEAIKQIKPSARGELEITDAIDLYIEKGYLVVAILIR 216 (286)
T ss_pred -----CC--cEEEeEECCCCCCCceeEEEEEEeChHHHHHHHcCCCCCCCceEehHHHHHHHHcCcEEEEEEcc
Confidence 00 0000000 0111124467789999999988211111 12223456778888999999988754
|
|
| >TIGR01173 glmU UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase | Back alignment and domain information |
|---|
Probab=89.15 E-value=2.3 Score=40.94 Aligned_cols=95 Identities=15% Similarity=0.167 Sum_probs=61.7
Q ss_pred EEeccCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCcchHHHHHHHHHHcCCCcEEEEEcCCCCChHHHHHH
Q 019818 71 IIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNHGKGEAIRK 150 (335)
Q Consensus 71 iip~~ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~vi~~~~~~Gk~~aln~ 150 (335)
++|+-+ ...|..+++.+.+. ...+++++.....+. +++....+ ++.++..++..|.+.++..
T Consensus 22 l~~i~g-kpli~~~l~~l~~~----------g~~~iiiv~~~~~~~----i~~~~~~~---~i~~~~~~~~~G~~~ai~~ 83 (451)
T TIGR01173 22 LHPLAG-KPMLEHVIDAARAL----------GPQKIHVVYGHGAEQ----VRKALANR---DVNWVLQAEQLGTGHAVLQ 83 (451)
T ss_pred hceeCC-ccHHHHHHHHHHhC----------CCCeEEEEECCCHHH----HHHHhcCC---CcEEEEcCCCCchHHHHHH
Confidence 555544 46777777776551 134666665432222 23322222 4666666656788888999
Q ss_pred HHHhcC-CCEEEEEeCCC-CCCcchHHHHHHHHHH
Q 019818 151 GMLHSR-GELLLMLDADG-ATKVTDLEKLESQIHA 183 (335)
Q Consensus 151 g~~~a~-~d~v~~~DaD~-~~~~~~l~~l~~~~~~ 183 (335)
++.... .+.++++++|. .++++.+.++++.+.+
T Consensus 84 a~~~l~~~~~~lv~~~D~p~i~~~~~~~l~~~~~~ 118 (451)
T TIGR01173 84 ALPFLPDDGDVLVLYGDVPLISAETLERLLEAHRQ 118 (451)
T ss_pred HHHhcCCCCcEEEEECCcCCcCHHHHHHHHHHHhh
Confidence 988874 47899999998 5688899998887754
|
This protein is a bifunctional enzyme, GlmU, which catalyzes last two reactions in the four-step pathway of UDP-N-acetylglucosamine biosynthesis from fructose-6-phosphate. Its reaction product is required from peptidoglycan biosynthesis, LPS biosynthesis in species with LPS, and certain other processes. |
| >KOG1022 consensus Acetylglucosaminyltransferase EXT2/exostosin 2 [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis; Extracellular structures] | Back alignment and domain information |
|---|
Probab=89.15 E-value=2.7 Score=40.70 Aligned_cols=110 Identities=11% Similarity=0.007 Sum_probs=70.0
Q ss_pred CCCceEEEEEeccCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCcchH-HHHHHHHHHcCCCcEEEEEcCCC
Q 019818 63 PAEKYISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTK-RVAFDFVRKYTVDNVRIILLGRN 141 (335)
Q Consensus 63 ~~~~~vsViip~~ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~-~~~~~~~~~~~~~~i~vi~~~~~ 141 (335)
+....+|.++-+||.-+.|...+..... -+.--+|+||=|+-..+.. +..+.. ....+++....+|
T Consensus 440 ~~~qgFTlim~TYdR~d~L~k~v~~ys~---------vPsL~kIlVVWNnq~k~PP~es~~~~----~~VPlr~r~qkeN 506 (691)
T KOG1022|consen 440 GHSQGFTLIMLTYDRVDLLKKLVKHYSR---------VPSLKKILVVWNNQGKNPPPESLEPD----IAVPLRFRQQKEN 506 (691)
T ss_pred CcccceeeeeehHHHHHHHHHHHHHHhh---------CCCcceEEEEecCCCCCCChhhcccc----CCccEEEEehhhh
Confidence 4445699999999987666665555543 3334677777664222221 211111 1124555555443
Q ss_pred CChHHHHHHHHHhcCCCEEEEEeCCCCCCcchHHHHHHHHHHhccc
Q 019818 142 HGKGEAIRKGMLHSRGELLLMLDADGATKVTDLEKLESQIHAVGRK 187 (335)
Q Consensus 142 ~Gk~~aln~g~~~a~~d~v~~~DaD~~~~~~~l~~l~~~~~~~~~~ 187 (335)
+-.++-.-....+.+.|+.+|+|..++-+.|+---+..++.++.
T Consensus 507 --sLnNRF~~~peieT~AVL~IDDDIim~~ddldFgf~VWrefPD~ 550 (691)
T KOG1022|consen 507 --SLNNRFEPYPEIETEAVLEIDDDIIMPCDDLDFGFEVWREFPDR 550 (691)
T ss_pred --hhhcccccCcccccceeEEecCceeeecchhHHHHHHHHhCccc
Confidence 33333334445678999999999999999999999999888864
|
|
| >PRK00317 mobA molybdopterin-guanine dinucleotide biosynthesis protein MobA; Reviewed | Back alignment and domain information |
|---|
Probab=89.14 E-value=2.1 Score=35.96 Aligned_cols=86 Identities=14% Similarity=0.127 Sum_probs=56.8
Q ss_pred CCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCcchHHHHHHHHHHcCCCcEEEEEcCC--CCChHHHHHHHHH
Q 019818 76 NEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGR--NHGKGEAIRKGML 153 (335)
Q Consensus 76 ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~vi~~~~--~~Gk~~aln~g~~ 153 (335)
+....+..+++.+... --+|+|+.+.. .+... .. ++.++.... ..|...++..|++
T Consensus 28 ~g~~ll~~~i~~l~~~-----------~~~i~vv~~~~----~~~~~----~~---~~~~v~~~~~~~~g~~~~i~~~l~ 85 (193)
T PRK00317 28 NGKPLIQHVIERLAPQ-----------VDEIVINANRN----LARYA----AF---GLPVIPDSLADFPGPLAGILAGLK 85 (193)
T ss_pred CCEEHHHHHHHHHhhh-----------CCEEEEECCCC----hHHHH----hc---CCcEEeCCCCCCCCCHHHHHHHHH
Confidence 5566777777766521 23677764422 11121 11 344554432 3677788999999
Q ss_pred hcCCCEEEEEeCCC-CCCcchHHHHHHHHHH
Q 019818 154 HSRGELLLMLDADG-ATKVTDLEKLESQIHA 183 (335)
Q Consensus 154 ~a~~d~v~~~DaD~-~~~~~~l~~l~~~~~~ 183 (335)
....++++++++|. .++++.+..+++.+.+
T Consensus 86 ~~~~~~vlv~~~D~P~i~~~~i~~l~~~~~~ 116 (193)
T PRK00317 86 QARTEWVLVVPCDTPFIPPDLVARLAQAAGK 116 (193)
T ss_pred hcCCCeEEEEcCCcCCCCHHHHHHHHHhhhc
Confidence 88889999999999 4699999999987754
|
|
| >PF01697 Glyco_transf_92: Glycosyltransferase family 92; InterPro: IPR008166 This entry represents a region approximately 300 residues long that is of unknown function | Back alignment and domain information |
|---|
Probab=88.43 E-value=3 Score=37.32 Aligned_cols=108 Identities=21% Similarity=0.273 Sum_probs=68.0
Q ss_pred EEEEE-eccCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCcchHHHHHHHHHHcCCCcEEEEEcC-------
Q 019818 68 ISLII-PAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLG------- 139 (335)
Q Consensus 68 vsVii-p~~ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~vi~~~------- 139 (335)
++|.+ |.|..+.... .+.+.+..... ..--.+++-+.++++.+.++++...+. + .++++.-+
T Consensus 3 ~~vCv~pl~~~~~~~~-~l~e~ie~~~~------~G~~~~~~Y~~~~~~~~~~vL~~Y~~~-g--~v~~~~w~~~~~~~~ 72 (285)
T PF01697_consen 3 FVVCVSPLFGNEDDWL-QLIEWIEYHRL------LGVDHFYFYDNSSSPSVRKVLKEYERS-G--YVEVIPWPLRPKFPD 72 (285)
T ss_pred EEEEccchhcccccHH-HHHHHHHHHHH------hCCCEEEEEEccCCHHHHHhHHHHhhc-C--eEEEEEcccccccCC
Confidence 56666 6666443222 23333332222 134677777788999999999887665 2 57776664
Q ss_pred -------CC-----CChHHHHHHHHHhcC--CCEEEEEeCCCCCCcch----HHHHHHHHHHhc
Q 019818 140 -------RN-----HGKGEAIRKGMLHSR--GELLLMLDADGATKVTD----LEKLESQIHAVG 185 (335)
Q Consensus 140 -------~~-----~Gk~~aln~g~~~a~--~d~v~~~DaD~~~~~~~----l~~l~~~~~~~~ 185 (335)
.+ .|-..|.|..+.+.+ .++++++|.|..+-|.. ...+...+++.+
T Consensus 73 ~~~~~~~~~~~~~~~~q~~a~~DCl~r~~~~~~~v~f~DiDE~lvP~~~~~~~~~~~~~l~~~~ 136 (285)
T PF01697_consen 73 FPSPFPDPNSSVERRGQIAAYNDCLLRYRYRAKWVAFIDIDEFLVPTNAPTYPEEFEDLLREFP 136 (285)
T ss_pred cccchhhhhhHHHHHHHHHHHHHHHHHhhhhceEEEEeccccEEEeccccchhhHHHHHHhhcc
Confidence 01 234667788887765 58999999999775544 666666665543
|
The aligned region contains several conserved cysteine residues and several charged residues that may be catalytic residues. |
| >PRK02726 molybdopterin-guanine dinucleotide biosynthesis protein A; Provisional | Back alignment and domain information |
|---|
Probab=87.84 E-value=3.4 Score=35.11 Aligned_cols=88 Identities=17% Similarity=0.120 Sum_probs=59.6
Q ss_pred CCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCcchHHHHHHHHHHcCCCcEEEEEcCC-CCChHHHHHHHHHh
Q 019818 76 NEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGR-NHGKGEAIRKGMLH 154 (335)
Q Consensus 76 ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~vi~~~~-~~Gk~~aln~g~~~ 154 (335)
+....|+.+++.+... .-+|+|+... . +....... . ++.++..+. ..|...++..|+..
T Consensus 31 ~g~~ll~~~i~~l~~~-----------~~~ivvv~~~-~----~~~~~~~~--~--~~~~i~~~~~~~G~~~si~~~l~~ 90 (200)
T PRK02726 31 QGVPLLQRVARIAAAC-----------ADEVYIITPW-P----ERYQSLLP--P--GCHWLREPPPSQGPLVAFAQGLPQ 90 (200)
T ss_pred CCEeHHHHHHHHHHhh-----------CCEEEEECCC-H----HHHHhhcc--C--CCeEecCCCCCCChHHHHHHHHHh
Confidence 5566777777776441 2366666431 1 12222211 1 466666543 47888999999999
Q ss_pred cCCCEEEEEeCCCC-CCcchHHHHHHHHHH
Q 019818 155 SRGELLLMLDADGA-TKVTDLEKLESQIHA 183 (335)
Q Consensus 155 a~~d~v~~~DaD~~-~~~~~l~~l~~~~~~ 183 (335)
...++++++++|.. ++++.+.++++..++
T Consensus 91 ~~~~~vlv~~~D~P~i~~~~i~~l~~~~~~ 120 (200)
T PRK02726 91 IKTEWVLLLACDLPRLTVDVLQEWLQQLEN 120 (200)
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Confidence 88899999999996 589999999988754
|
|
| >TIGR02665 molyb_mobA molybdopterin-guanine dinucleotide biosynthesis protein A, proteobacterial | Back alignment and domain information |
|---|
Probab=87.33 E-value=2.9 Score=34.76 Aligned_cols=88 Identities=13% Similarity=0.134 Sum_probs=58.4
Q ss_pred CCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCcchHHHHHHHHHHcCCCcEEEEEc--CCCCChHHHHHHHHH
Q 019818 76 NEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILL--GRNHGKGEAIRKGML 153 (335)
Q Consensus 76 ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~vi~~--~~~~Gk~~aln~g~~ 153 (335)
++...|..+++.+... -.+|+|+.+... .+.. .... ++.++.. +...|...++..|+.
T Consensus 25 ~g~pll~~~l~~l~~~-----------~~~ivv~~~~~~---~~~~---~~~~---~~~~i~~~~~~~~g~~~si~~al~ 84 (186)
T TIGR02665 25 GGKPLIEHVLARLRPQ-----------VSDLAISANRNP---ERYA---QAGF---GLPVVPDALADFPGPLAGILAGLR 84 (186)
T ss_pred CCEEHHHHHHHHHHhh-----------CCEEEEEcCCCH---HHHh---hccC---CCcEEecCCCCCCCCHHHHHHHHH
Confidence 4556677777766431 236777654321 1111 1111 3455554 234788999999999
Q ss_pred hcCCCEEEEEeCCC-CCCcchHHHHHHHHHH
Q 019818 154 HSRGELLLMLDADG-ATKVTDLEKLESQIHA 183 (335)
Q Consensus 154 ~a~~d~v~~~DaD~-~~~~~~l~~l~~~~~~ 183 (335)
....++++++++|. .++++.+.++++.+.+
T Consensus 85 ~~~~~~vlv~~~D~P~i~~~~i~~l~~~~~~ 115 (186)
T TIGR02665 85 WAGTDWVLTVPCDTPFLPEDLVARLAAALEA 115 (186)
T ss_pred hcCCCeEEEEecCCCcCCHHHHHHHHHHhhc
Confidence 88889999999998 5799999999998854
|
In many molybdopterin-containing enzymes, including nitrate reductase and dimethylsulfoxide reductase, the cofactor is molybdopterin-guanine dinucleotide. The family described here contains MobA, molybdopterin-guanine dinucleotide biosynthesis protein A, from the Proteobacteria only. MobA can reconstitute molybdopterin-guanine dinucleotide biosynthesis without the product of the neighboring gene MobB. The probable MobA proteins of other lineages differ sufficiently that they are not included in scope of this family. |
| >cd02523 PC_cytidylyltransferase Phosphocholine cytidylyltransferases catalyze the synthesis of CDP-choline | Back alignment and domain information |
|---|
Probab=87.30 E-value=3.4 Score=35.68 Aligned_cols=90 Identities=13% Similarity=0.152 Sum_probs=57.4
Q ss_pred EEeccCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCcchHHHHHHHHHHcCCCcEEEEEcCC--CCChHHHH
Q 019818 71 IIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGR--NHGKGEAI 148 (335)
Q Consensus 71 iip~~ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~vi~~~~--~~Gk~~al 148 (335)
++|+-+ ...|...++++.+. .--+|+||.....+ .+.+...... ++.++..+. ..|.+.++
T Consensus 23 l~~~~g-~~li~~~l~~l~~~----------gi~~i~vv~~~~~~----~~~~~~~~~~--~~~~~~~~~~~~~g~~~s~ 85 (229)
T cd02523 23 LLEING-KPLLERQIETLKEA----------GIDDIVIVTGYKKE----QIEELLKKYP--NIKFVYNPDYAETNNIYSL 85 (229)
T ss_pred eeeECC-EEHHHHHHHHHHHC----------CCceEEEEeccCHH----HHHHHHhccC--CeEEEeCcchhhhCcHHHH
Confidence 455544 36777777776652 23477777653222 2233322223 577776653 47888899
Q ss_pred HHHHHhcCCCEEEEEeCCCCCCcchHHHHH
Q 019818 149 RKGMLHSRGELLLMLDADGATKVTDLEKLE 178 (335)
Q Consensus 149 n~g~~~a~~d~v~~~DaD~~~~~~~l~~l~ 178 (335)
..|.... .+.++++.+|....++.+..+.
T Consensus 86 ~~~~~~~-~~~~lv~~~D~~~~~~~~~~~~ 114 (229)
T cd02523 86 YLARDFL-DEDFLLLEGDVVFDPSILERLL 114 (229)
T ss_pred HHHHHHc-CCCEEEEeCCEecCHHHHHHHH
Confidence 9998887 6778999999988876655544
|
This family contains proteins similar to prokaryotic phosphocholine (P-cho) cytidylyltransferases. Phosphocholine (PC) cytidylyltransferases catalyze the transfer of a cytidine monophosphate from CTP to phosphocholine to form CDP-choline. PC is the most abundant phospholipid in eukaryotic membranes and it is also important in prokaryotic membranes. For pathogenic prokaryotes, the cell surface PC facilitates the interaction with host surface and induces attachment and invasion. In addition cell wall PC serves as scaffold for a group of choline-binding proteins that are secreted from the cells. Phosphocholine (PC) cytidylyltransferase is a key enzyme in the prokaryotic choline metabolism pathway. It has been hypothesized to consist of a choline transport system, a choline kinase, CTP:phosphocholine cytidylyltransferase, and a choline phosphotransferase that transfers P-Cho from CDP |
| >cd04189 G1P_TT_long G1P_TT_long represents the long form of glucose-1-phosphate thymidylyltransferase | Back alignment and domain information |
|---|
Probab=87.11 E-value=11 Score=32.68 Aligned_cols=99 Identities=13% Similarity=0.097 Sum_probs=58.2
Q ss_pred EEeccCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCcchHHHHHHHHHHcCCCcEEEEEcCCCCChHHHHHH
Q 019818 71 IIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNHGKGEAIRK 150 (335)
Q Consensus 71 iip~~ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~vi~~~~~~Gk~~aln~ 150 (335)
++|+-+. ..+...++.+.+. .--+|+++.....+...+.+.+.. +++ ..+.++..+...|-+.++..
T Consensus 25 l~~i~g~-~li~~~l~~l~~~----------~~~~i~vv~~~~~~~~~~~~~~~~-~~~-~~i~~~~~~~~~g~~~sl~~ 91 (236)
T cd04189 25 LIPVAGK-PIIQYAIEDLREA----------GIEDIGIVVGPTGEEIKEALGDGS-RFG-VRITYILQEEPLGLAHAVLA 91 (236)
T ss_pred eeEECCc-chHHHHHHHHHHC----------CCCEEEEEcCCCHHHHHHHhcchh-hcC-CeEEEEECCCCCChHHHHHH
Confidence 5666454 7777777777651 234677776543333333332211 111 24556655556788899999
Q ss_pred HHHhcCCCEEEEEeCCCCCCcchHHHHHHHHHH
Q 019818 151 GMLHSRGELLLMLDADGATKVTDLEKLESQIHA 183 (335)
Q Consensus 151 g~~~a~~d~v~~~DaD~~~~~~~l~~l~~~~~~ 183 (335)
|......+-++++.+|...+.+ +..+++.+.+
T Consensus 92 a~~~i~~~~~li~~~D~~~~~~-~~~~~~~~~~ 123 (236)
T cd04189 92 ARDFLGDEPFVVYLGDNLIQEG-ISPLVRDFLE 123 (236)
T ss_pred HHHhcCCCCEEEEECCeecCcC-HHHHHHHHHh
Confidence 9887754445668899988765 4556665543
|
This family is the long form of Glucose-1-phosphate thymidylyltransferase. Glucose-1-phosphate thymidylyltransferase catalyses the formation of dTDP-glucose, from dTTP and glucose 1-phosphate. It is the first enzyme in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.There are two forms of Glucose-1-phosphate thymidylyltransferase in bacteria and archeae; short form and long form. The long form, which has an extra 50 amino acids c-terminal, is found in many species for which it serves as a sugar-activating enzyme for antibiotic biosynthesis and or other, unknown pathways, and in which dTDP-L-rhamnose is not necessarily produced.The long from enzymes also have a left-handed parallel helix domain at the c-terminus, whereas, th eshort form enzymes do not have this domain. The homotetrameric, feedback inhibited short form is found in |
| >PRK14355 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=86.96 E-value=4.3 Score=39.32 Aligned_cols=97 Identities=13% Similarity=0.131 Sum_probs=63.9
Q ss_pred EEeccCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCcchHHHHHHHHHHcCCCcEEEEEcCCCCChHHHHHH
Q 019818 71 IIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNHGKGEAIRK 150 (335)
Q Consensus 71 iip~~ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~vi~~~~~~Gk~~aln~ 150 (335)
++|+.+. +.+...++++.+. .--+++++.....+ ++.+.+ .+.. .+.++..++..|-+.++..
T Consensus 25 l~pi~g~-pli~~~l~~l~~~----------gi~~iiiv~~~~~~---~i~~~~-~~~~--~i~~~~~~~~~Gt~~al~~ 87 (459)
T PRK14355 25 MHPLAGR-PMVSWPVAAAREA----------GAGRIVLVVGHQAE---KVREHF-AGDG--DVSFALQEEQLGTGHAVAC 87 (459)
T ss_pred eceeCCc-cHHHHHHHHHHhc----------CCCeEEEEECCCHH---HHHHHh-ccCC--ceEEEecCCCCCHHHHHHH
Confidence 5666554 6677777766551 23466666553322 222222 2222 4666666667788899999
Q ss_pred HHHhcC--CCEEEEEeCCC-CCCcchHHHHHHHHHHh
Q 019818 151 GMLHSR--GELLLMLDADG-ATKVTDLEKLESQIHAV 184 (335)
Q Consensus 151 g~~~a~--~d~v~~~DaD~-~~~~~~l~~l~~~~~~~ 184 (335)
++.... .|.++++++|. .+.+..+.++++.+.+.
T Consensus 88 a~~~l~~~~~~vlv~~gD~p~~~~~~i~~l~~~~~~~ 124 (459)
T PRK14355 88 AAPALDGFSGTVLILCGDVPLLRAETLQGMLAAHRAT 124 (459)
T ss_pred HHHHhhccCCcEEEEECCccCcCHHHHHHHHHHHHhc
Confidence 988764 47899999998 57888999999877553
|
|
| >cd02513 CMP-NeuAc_Synthase CMP-NeuAc_Synthase activates N-acetylneuraminic acid by adding CMP moiety | Back alignment and domain information |
|---|
Probab=86.70 E-value=4.5 Score=34.63 Aligned_cols=42 Identities=7% Similarity=0.151 Sum_probs=33.8
Q ss_pred ChHHHHHHHHHhcC-----CCEEEEEeCCCC-CCcchHHHHHHHHHHh
Q 019818 143 GKGEAIRKGMLHSR-----GELLLMLDADGA-TKVTDLEKLESQIHAV 184 (335)
Q Consensus 143 Gk~~aln~g~~~a~-----~d~v~~~DaD~~-~~~~~l~~l~~~~~~~ 184 (335)
|...++..|++... .|.++++++|.. +.++.+.++++.+.+.
T Consensus 79 ~~~~~i~~~l~~l~~~~~~~d~vlv~~~D~P~i~~~~i~~~i~~~~~~ 126 (223)
T cd02513 79 SSIDVILHALDQLEELGRDFDIVVLLQPTSPLRSAEDIDEAIELLLSE 126 (223)
T ss_pred CcHHHHHHHHHHHHHhCCCCCEEEEeCCCCCcCCHHHHHHHHHHHHhC
Confidence 56777888887653 389999999996 5889999999988654
|
CMP-N-acetylneuraminic acid synthetase (CMP-NeuAc synthetase) or acylneuraminate cytidylyltransferase catalyzes the transfer the CMP moiety of CTP to the anomeric hydroxyl group of NeuAc in the presence of Mg++. It is the second to last step in the sialylation of the oligosaccharide component of glycoconjugates by providing the activated sugar-nucleotide cytidine 5'-monophosphate N-acetylneuraminic acid (CMP-Neu5Ac), the substrate for sialyltransferases. Eukaryotic CMP-NeuAc synthetases are predominantly located in the nucleus. The activated CMP-Neu5Ac diffuses from the nucleus into the cytoplasm. |
| >cd06425 M1P_guanylylT_B_like_N N-terminal domain of the M1P-guanylyltransferase B-isoform like proteins | Back alignment and domain information |
|---|
Probab=86.64 E-value=4.8 Score=34.91 Aligned_cols=99 Identities=10% Similarity=0.102 Sum_probs=59.4
Q ss_pred EEeccCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCcchHHHHHHHHHHcCCCcEEEEE--cCCCCChHHHH
Q 019818 71 IIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIIL--LGRNHGKGEAI 148 (335)
Q Consensus 71 iip~~ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~vi~--~~~~~Gk~~al 148 (335)
++|+-+. +.|..+++++.++ .--+|+++.....+...+.+.+.... . ++.++. .....|-+.++
T Consensus 25 llpv~g~-pli~~~l~~l~~~----------g~~~v~iv~~~~~~~~~~~l~~~~~~-~--~~~i~~~~~~~~~G~~~al 90 (233)
T cd06425 25 LVEFCNK-PMIEHQIEALAKA----------GVKEIILAVNYRPEDMVPFLKEYEKK-L--GIKITFSIETEPLGTAGPL 90 (233)
T ss_pred cCeECCc-chHHHHHHHHHHC----------CCcEEEEEeeeCHHHHHHHHhccccc-C--CeEEEeccCCCCCccHHHH
Confidence 4566554 6777777777652 12466666654444434444332111 1 344433 33457888899
Q ss_pred HHHHHhcCC--CEEEEEeCCCCCCcchHHHHHHHHHHh
Q 019818 149 RKGMLHSRG--ELLLMLDADGATKVTDLEKLESQIHAV 184 (335)
Q Consensus 149 n~g~~~a~~--d~v~~~DaD~~~~~~~l~~l~~~~~~~ 184 (335)
..|...... +-++++.+|...+.+ +.++++...+.
T Consensus 91 ~~a~~~~~~~~~~~lv~~~D~~~~~~-~~~~~~~~~~~ 127 (233)
T cd06425 91 ALARDLLGDDDEPFFVLNSDVICDFP-LAELLDFHKKH 127 (233)
T ss_pred HHHHHHhccCCCCEEEEeCCEeeCCC-HHHHHHHHHHc
Confidence 999887753 446777999877655 57888776554
|
GDP-mannose pyrophosphorylase (GTP: alpha-d-mannose-1-phosphate guanyltransferase) catalyzes the formation of GDP-d-mannose from GTP and alpha-d-mannose-1-Phosphate. It contains an N-terminal catalytic domain and a C-terminal Lefthanded-beta-Helix fold domain. GDP-d-mannose is the activated form of mannose for formation of cell wall lipoarabinomannan and various mannose-containing glycolipids and polysaccharides. The function of GDP-mannose pyrophosphorylase is essential for cell wall integrity, morphogenesis and viability. Repression of GDP-mannose pyrophosphorylase in yeast leads to phenotypes, such as cell lysis, defective cell wall, and failure of polarized growth and cell separation. |
| >PLN02728 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase | Back alignment and domain information |
|---|
Probab=86.51 E-value=10 Score=33.69 Aligned_cols=92 Identities=14% Similarity=0.128 Sum_probs=53.9
Q ss_pred CCChHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCcchHHHHHHHHHHcCCCcEEEEEcCCCCChHHHHHHHHHhcC-
Q 019818 78 EHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNHGKGEAIRKGMLHSR- 156 (335)
Q Consensus 78 ~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~vi~~~~~~Gk~~aln~g~~~a~- 156 (335)
...|..+++.+.. ....-+|++|.+... .+..+.....++ ..+.++ ....+....+..|++...
T Consensus 52 kpll~~tl~~~~~---------~~~i~~IvVV~~~~~---~~~~~~~~~~~~-~~i~~v--~gg~~r~~SV~~gl~~l~~ 116 (252)
T PLN02728 52 QPIALYSLYTFAR---------MPEVKEIVVVCDPSY---RDVFEEAVENID-VPLKFA--LPGKERQDSVFNGLQEVDA 116 (252)
T ss_pred eEHHHHHHHHHHh---------CCCCCeEEEEeCHHH---HHHHHHHHHhcC-CceEEc--CCCCchHHHHHHHHHhccC
Confidence 3455555555544 122457777765321 233333333332 134332 233456777888888763
Q ss_pred -CCEEEEEeCCCC-CCcchHHHHHHHHHHh
Q 019818 157 -GELLLMLDADGA-TKVTDLEKLESQIHAV 184 (335)
Q Consensus 157 -~d~v~~~DaD~~-~~~~~l~~l~~~~~~~ 184 (335)
.++|++.|++-. ++++.+.++++.....
T Consensus 117 ~~~~VlihDaarP~vs~~~i~~li~~~~~~ 146 (252)
T PLN02728 117 NSELVCIHDSARPLVTSADIEKVLKDAAVH 146 (252)
T ss_pred CCCEEEEecCcCCCCCHHHHHHHHHHHhhC
Confidence 578999998764 6888889999877653
|
|
| >COG1213 Predicted sugar nucleotidyltransferases [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=86.46 E-value=1.9 Score=37.40 Aligned_cols=90 Identities=14% Similarity=0.249 Sum_probs=66.4
Q ss_pred CCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCcchHHHHHHHHHHcCCCcEEEEEcCC-CCC-hHHHHHHHHHh
Q 019818 77 EEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGR-NHG-KGEAIRKGMLH 154 (335)
Q Consensus 77 e~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~vi~~~~-~~G-k~~aln~g~~~ 154 (335)
..+-|..++++|.+ ...-|+++|.+|-. .+.++++..+++. +.+++.++. .+| -+..+-.|...
T Consensus 30 gr~ii~~~i~~L~~----------~gi~e~vvV~~g~~---~~lve~~l~~~~~-~~~iv~N~~y~ktN~~~Sl~~akd~ 95 (239)
T COG1213 30 GREIIYRTIENLAK----------AGITEFVVVTNGYR---ADLVEEFLKKYPF-NAKIVINSDYEKTNTGYSLLLAKDY 95 (239)
T ss_pred CeEeHHHHHHHHHH----------cCCceEEEEeccch---HHHHHHHHhcCCc-ceEEEeCCCcccCCceeEEeeehhh
Confidence 44677888888876 34578999987654 3456667777774 577777763 233 35678888888
Q ss_pred cCCCEEEEEeCCCCCCcchHHHHHHHH
Q 019818 155 SRGELLLMLDADGATKVTDLEKLESQI 181 (335)
Q Consensus 155 a~~d~v~~~DaD~~~~~~~l~~l~~~~ 181 (335)
+.++ ++++++|...+|..+++++++-
T Consensus 96 ~~~~-fii~~sD~vye~~~~e~l~~a~ 121 (239)
T COG1213 96 MDGR-FILVMSDHVYEPSILERLLEAP 121 (239)
T ss_pred hcCc-EEEEeCCEeecHHHHHHHHhCc
Confidence 8888 8889999999999999988643
|
|
| >TIGR00454 conserved hypothetical protein TIGR00454 | Back alignment and domain information |
|---|
Probab=86.38 E-value=9.2 Score=32.05 Aligned_cols=98 Identities=10% Similarity=0.067 Sum_probs=62.8
Q ss_pred EEeccCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCcchHHHHHHHHHHcCCCcEEEEEcCCCCChHHHHHH
Q 019818 71 IIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNHGKGEAIRK 150 (335)
Q Consensus 71 iip~~ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~vi~~~~~~Gk~~aln~ 150 (335)
++|. +....|...++++.. .. .-+|+++.+..++.+.+.+++ . ...+. .....|....+..
T Consensus 21 Ll~i-~GkplI~~vi~~l~~---------~~-i~~I~Vv~~~~~~~~~~~l~~---~----~~~~~-~~~g~G~~~~l~~ 81 (183)
T TIGR00454 21 LIEV-CGRCLIDHVLSPLLK---------SK-VNNIIIATSPHTPKTEEYINS---A----YKDYK-NASGKGYIEDLNE 81 (183)
T ss_pred EeEE-CCEEHHHHHHHHHHh---------CC-CCEEEEEeCCCHHHHHHHHhh---c----CcEEE-ecCCCCHHHHHHH
Confidence 3444 445667777666654 12 346777765444455444432 1 22233 2456778888999
Q ss_pred HHHhc-CCCEEEEEeCCCC-CCcchHHHHHHHHHHhccc
Q 019818 151 GMLHS-RGELLLMLDADGA-TKVTDLEKLESQIHAVGRK 187 (335)
Q Consensus 151 g~~~a-~~d~v~~~DaD~~-~~~~~l~~l~~~~~~~~~~ 187 (335)
|++.. ..+.++++-+|.. +.++.+..+++.+...+..
T Consensus 82 al~~~~~~~~~lv~~~D~P~i~~~~i~~li~~~~~~~~~ 120 (183)
T TIGR00454 82 CIGELYFSEPFLVVSSDLINLRSKIIDSIVDYYYCIKAP 120 (183)
T ss_pred HhhcccCCCCEEEEeCCcCcCCHHHHHHHHHHHHhcCCC
Confidence 99853 3578999999996 6999999999988665443
|
At this time this gene appears to be present only in Archea |
| >cd02517 CMP-KDO-Synthetase CMP-KDO synthetase catalyzes the activation of KDO which is an essential component of the lipopolysaccharide | Back alignment and domain information |
|---|
Probab=86.00 E-value=10 Score=32.91 Aligned_cols=94 Identities=9% Similarity=0.148 Sum_probs=55.6
Q ss_pred EEeccCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCcchHHHHHHHHHHcCCCcEEEEEcCC--CCChHHHH
Q 019818 71 IIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGR--NHGKGEAI 148 (335)
Q Consensus 71 iip~~ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~vi~~~~--~~Gk~~al 148 (335)
++|+ ++...|..+++.+.+ ...--+|+|+-+. + .+.+....+ ++.++..++ ..|.+. +
T Consensus 20 l~~i-~gkpll~~~l~~l~~---------~~~i~~ivvv~~~--~----~i~~~~~~~---~~~~~~~~~~~~~gt~~-~ 79 (239)
T cd02517 20 LADI-AGKPMIQHVYERAKK---------AKGLDEVVVATDD--E----RIADAVESF---GGKVVMTSPDHPSGTDR-I 79 (239)
T ss_pred Cccc-CCcCHHHHHHHHHHh---------CCCCCEEEEECCc--H----HHHHHHHHc---CCEEEEcCcccCchhHH-H
Confidence 4454 455677777777655 1123467776431 2 223333333 355544432 335543 4
Q ss_pred HHHHHhcCC--CEEEEEeCCC-CCCcchHHHHHHHHHHh
Q 019818 149 RKGMLHSRG--ELLLMLDADG-ATKVTDLEKLESQIHAV 184 (335)
Q Consensus 149 n~g~~~a~~--d~v~~~DaD~-~~~~~~l~~l~~~~~~~ 184 (335)
..++..... |.++++++|. .++++.+.++++.+.++
T Consensus 80 ~~~~~~~~~~~d~vlv~~gD~Pli~~~~l~~l~~~~~~~ 118 (239)
T cd02517 80 AEVAEKLDADDDIVVNVQGDEPLIPPEMIDQVVAALKDD 118 (239)
T ss_pred HHHHHhcCCCCCEEEEecCCCCCCCHHHHHHHHHHHHhC
Confidence 455555554 8899999999 67899999999877543
|
CMP-KDO Synthetase: 3-Deoxy-D-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) catalyzes the conversion of CTP and 3-deoxy-D-manno-octulosonate into CMP-3-deoxy-D-manno-octulosonate (CMP-KDO) and pyrophosphate. KDO is an essential component of the lipopolysaccharide found in the outer surface of gram-negative eubacteria. It is also a constituent of the capsular polysaccharides of some gram-negative eubacteria. Its presence in the cell wall polysaccharides of green algae and plant were also discovered. However, they have not been found in yeast and animals. The absence of the enzyme in mammalian cells makes it an attractive target molecule for drug design. |
| >cd06428 M1P_guanylylT_A_like_N N-terminal domain of M1P_guanylyl_A_ like proteins are likely to be a isoform of GDP-mannose pyrophosphorylase | Back alignment and domain information |
|---|
Probab=85.59 E-value=7.3 Score=34.38 Aligned_cols=102 Identities=13% Similarity=0.036 Sum_probs=62.4
Q ss_pred EEeccCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCcchHHHHHHHHHHcCCCcEEEEEcCCCCChHHHHHH
Q 019818 71 IIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNHGKGEAIRK 150 (335)
Q Consensus 71 iip~~ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~vi~~~~~~Gk~~aln~ 150 (335)
++|+-+. ..|...|+++.+ ...--+|+++.....+...+.+.+.... ....+.++...+..|-+.|+..
T Consensus 25 llpv~g~-plI~~~l~~l~~---------~~gi~~i~iv~~~~~~~i~~~l~~~~~~-~~~~i~~~~~~~~~Gt~~al~~ 93 (257)
T cd06428 25 LFPVAGK-PMIHHHIEACAK---------VPDLKEVLLIGFYPESVFSDFISDAQQE-FNVPIRYLQEYKPLGTAGGLYH 93 (257)
T ss_pred cCeECCe-eHHHHHHHHHHh---------cCCCcEEEEEecCCHHHHHHHHHhcccc-cCceEEEecCCccCCcHHHHHH
Confidence 6677666 777777777754 1123577777665444444444332111 1124555555556788888877
Q ss_pred HHHhcC---CCEEEEEeCCCCCCcchHHHHHHHHHHh
Q 019818 151 GMLHSR---GELLLMLDADGATKVTDLEKLESQIHAV 184 (335)
Q Consensus 151 g~~~a~---~d~v~~~DaD~~~~~~~l~~l~~~~~~~ 184 (335)
+..... .+.++++.+|..... .+..+++...+.
T Consensus 94 a~~~l~~~~~~~~lv~~gD~~~~~-dl~~~~~~h~~~ 129 (257)
T cd06428 94 FRDQILAGNPSAFFVLNADVCCDF-PLQELLEFHKKH 129 (257)
T ss_pred HHHHhhccCCCCEEEEcCCeecCC-CHHHHHHHHHHc
Confidence 776542 467889999998655 478888766543
|
N-terminal domain of the M1P-guanylyltransferase A-isoform like proteins: The proteins of this family are likely to be a isoform of GDP-mannose pyrophosphorylase. Their sequences are highly conserved with mannose-1-phosphate guanyltransferase, but generally about 40-60 bases longer. GDP-mannose pyrophosphorylase (GTP: alpha-d-mannose-1-phosphate guanyltransferase) catalyzes the formation of GDP-d-mannose from GTP and alpha-d-mannose-1-Phosphate. It contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain. GDP-d-mannose is the activated form of mannose for formation of cell wall lipoarabinomannan and various mannose-containing glycolipids and polysaccharides. The function of GDP-mannose pyrophosphorylase is essential for cell wall integrity, morphogenesis and viability. Repre |
| >PLN03153 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=85.48 E-value=4.3 Score=39.48 Aligned_cols=112 Identities=13% Similarity=0.110 Sum_probs=66.5
Q ss_pred CChHHHHHH------HHHh--cCCCEEEEEeCCCCCCcchHHHHHHHHHHhccccccCCCcccccccccccCCCeeeeec
Q 019818 142 HGKGEAIRK------GMLH--SRGELLLMLDADGATKVTDLEKLESQIHAVGRKEYNHGDSVTVDSTFRISDIPIAAFGS 213 (335)
Q Consensus 142 ~Gk~~aln~------g~~~--a~~d~v~~~DaD~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~g~ 213 (335)
.|...+++. .++. -..++++++|+|+.+..+.|.++++.++.. + ...+|.
T Consensus 188 ~Gh~sa~rI~rmv~et~~~~~pd~kWfVf~DDDTyf~~~NLv~~Ls~YDpt--k--------------------p~YIGs 245 (537)
T PLN03153 188 TGHPSGLRISRIVLESFRLGLPDVRWFVLGDDDTIFNADNLVAVLSKYDPS--E--------------------MVYVGG 245 (537)
T ss_pred CCcHHHHHHHHHHHHHHHhhCCCCCEEEEecCCccccHHHHHHHHhhcCCC--C--------------------CEEecc
Confidence 465556544 3333 346999999999999877777777666432 1 456676
Q ss_pred chhhhhHhhhhhhhhHHHHHHHHHHHHHHHhCCCCccCCCceeeeeHHHHHHh---hhhhhh---ccccchHHHHHHhHH
Q 019818 214 RAHLEEKALATRKWYRNFLMKGFHLVVILTAGPGIRDTQCGFKMFTRAAARKL---FTNIRL---KRWCFDVELVYLCKR 287 (335)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~r~~l~~i---~~~~~~---~~~~~D~el~~r~~~ 287 (335)
..-... . ....+..+..+++|+ ++++.+++++ +..... ..++.|..|..-+..
T Consensus 246 ~Se~~~-------q-------------n~~f~~~fA~GGAG~-~LSrPLae~L~~~~d~C~~rY~~~~~gD~rL~~CL~e 304 (537)
T PLN03153 246 PSESHS-------A-------------NSYFSHNMAFGGGGI-AISYPLAEALSRILDDCLDRYPKLYGSDDRLHACITE 304 (537)
T ss_pred cccccc-------c-------------ccccccccccCCceE-EEcHHHHHHHHHHhhhhhhhcccCCCcHHHHHHHHHH
Confidence 642110 0 000011233355555 8999666665 333321 235679988888888
Q ss_pred cCCCEEEee
Q 019818 288 FGIPIIEIS 296 (335)
Q Consensus 288 ~G~~i~~~p 296 (335)
.|.++...|
T Consensus 305 lGV~LT~~~ 313 (537)
T PLN03153 305 LGVPLSREP 313 (537)
T ss_pred cCCCceecC
Confidence 898886665
|
|
| >PRK15480 glucose-1-phosphate thymidylyltransferase RfbA; Provisional | Back alignment and domain information |
|---|
Probab=85.37 E-value=12 Score=33.85 Aligned_cols=98 Identities=16% Similarity=0.110 Sum_probs=62.6
Q ss_pred EEeccCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCcchHHHHHHHHHHc--CCCcEEEEEcCCCCChHHHH
Q 019818 71 IIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKY--TVDNVRIILLGRNHGKGEAI 148 (335)
Q Consensus 71 iip~~ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~--~~~~i~vi~~~~~~Gk~~al 148 (335)
++|+++. +.|.-.|+.+.. ..--+|++|...... +.++++.... -+.++.+...++..|-+.|+
T Consensus 28 Llpv~gk-PmI~~~l~~l~~----------aGi~~I~ii~~~~~~---~~~~~~l~~g~~~g~~i~y~~q~~~~Gta~Al 93 (292)
T PRK15480 28 LLPIYDK-PMIYYPLSTLML----------AGIRDILIISTPQDT---PRFQQLLGDGSQWGLNLQYKVQPSPDGLAQAF 93 (292)
T ss_pred EeEECCE-EHHHHHHHHHHH----------CCCCEEEEEecCCch---HHHHHHHcCccccCceeEEEECCCCCCHHHHH
Confidence 7899887 777777777765 223577777543221 2223332111 11257777777788999999
Q ss_pred HHHHHhcCC-CEEEEEeCCCCCCcchHHHHHHHHHH
Q 019818 149 RKGMLHSRG-ELLLMLDADGATKVTDLEKLESQIHA 183 (335)
Q Consensus 149 n~g~~~a~~-d~v~~~DaD~~~~~~~l~~l~~~~~~ 183 (335)
..|...... ++++ +-+|..+....+..+++...+
T Consensus 94 ~~a~~~i~~~~~~l-v~gD~i~~~~~l~~ll~~~~~ 128 (292)
T PRK15480 94 IIGEEFIGGDDCAL-VLGDNIFYGHDLPKLMEAAVN 128 (292)
T ss_pred HHHHHHhCCCCEEE-EECCeeeeccCHHHHHHHHHh
Confidence 999888754 5555 457776655668888876644
|
|
| >cd06431 GT8_LARGE_C LARGE catalytic domain has closest homology to GT8 glycosyltransferase involved in lipooligosaccharide synthesis | Back alignment and domain information |
|---|
Probab=85.32 E-value=7.6 Score=35.02 Aligned_cols=105 Identities=13% Similarity=0.125 Sum_probs=64.8
Q ss_pred eEEEEEeccCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCcchHHHHHHHHHHcCCCcEEEEEcCC---C--
Q 019818 67 YISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGR---N-- 141 (335)
Q Consensus 67 ~vsViip~~ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~vi~~~~---~-- 141 (335)
.++||....|=...+..++.|++.. ...++.+.|++|+.+++..+.+.+....++ ..+.++..+. .
T Consensus 2 ~~~iv~~~~~y~~~~~~~i~Sil~n--------~~~~~~fhii~d~~s~~~~~~l~~~~~~~~-~~i~f~~i~~~~~~~~ 72 (280)
T cd06431 2 HVAIVCAGYNASRDVVTLVKSVLFY--------RRNPLHFHLITDEIARRILATLFQTWMVPA-VEVSFYNAEELKSRVS 72 (280)
T ss_pred EEEEEEccCCcHHHHHHHHHHHHHc--------CCCCEEEEEEECCcCHHHHHHHHHhccccC-cEEEEEEhHHhhhhhc
Confidence 3788888855566777788888762 445699999999887777666665433322 2455555431 1
Q ss_pred ----CChHHH---HHHHHHh-c--CCCEEEEEeCCCCCCcchHHHHHHHH
Q 019818 142 ----HGKGEA---IRKGMLH-S--RGELLLMLDADGATKVTDLEKLESQI 181 (335)
Q Consensus 142 ----~Gk~~a---ln~g~~~-a--~~d~v~~~DaD~~~~~~~l~~l~~~~ 181 (335)
...+.. ....+.. - .-|-++.+|+|..+. +.|.+|.+.+
T Consensus 73 ~~~~~~~s~~y~y~RL~ip~llp~~~dkvLYLD~Diiv~-~di~eL~~~~ 121 (280)
T cd06431 73 WIPNKHYSGIYGLMKLVLTEALPSDLEKVIVLDTDITFA-TDIAELWKIF 121 (280)
T ss_pred cCcccchhhHHHHHHHHHHHhchhhcCEEEEEcCCEEEc-CCHHHHHHHh
Confidence 111111 1222222 2 358999999999876 4567777765
|
The catalytic domain of LARGE is a putative glycosyltransferase. Mutations of LARGE in mouse and human cause dystroglycanopathies, a disease associated with hypoglycosylation of the membrane protein alpha-dystroglycan (alpha-DG) and consequent loss of extracellular ligand binding. LARGE needs to both physically interact with alpha-dystroglycan and function as a glycosyltransferase in order to stimulate alpha-dystroglycan hyperglycosylation. LARGE localizes to the Golgi apparatus and contains three conserved DxD motifs. While two of the motifs are indispensible for glycosylation function, one is important for localization of th eenzyme. LARGE was originally named because it covers approximately large trunck of genomic DNA, more than 600bp long. The predicted protein structure contains an N-terminal cytoplasmic domain, a transmembrane region, a coiled-coil |
| >TIGR03584 PseF pseudaminic acid CMP-transferase | Back alignment and domain information |
|---|
Probab=85.09 E-value=9.7 Score=32.98 Aligned_cols=90 Identities=10% Similarity=0.151 Sum_probs=56.4
Q ss_pred CCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCcchHHHHHHHHHHcCCCcEEE-EEcC-----CCCChHHHHH
Q 019818 76 NEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRI-ILLG-----RNHGKGEAIR 149 (335)
Q Consensus 76 ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~v-i~~~-----~~~Gk~~aln 149 (335)
++.+.+..+++.+.+ ....-+|+|..|. ++. .+.+++++ +.+ +.++ ...|...++.
T Consensus 22 ~GkpLi~~ti~~a~~---------s~~~d~IvVstd~--~~i----~~~a~~~g---~~v~~~r~~~l~~d~~~~~~si~ 83 (222)
T TIGR03584 22 CGKPMIAYSIEAALN---------SGLFDKVVVSTDD--EEI----AEVAKSYG---ASVPFLRPKELADDFTGTAPVVK 83 (222)
T ss_pred CCcCHHHHHHHHHHh---------CCCCCEEEEeCCC--HHH----HHHHHHcC---CEeEEeChHHHcCCCCCchHHHH
Confidence 556677777777765 2223455554331 222 23333443 333 2222 2356777888
Q ss_pred HHHHhc----CCCEEEEEeCCCCC-CcchHHHHHHHHHH
Q 019818 150 KGMLHS----RGELLLMLDADGAT-KVTDLEKLESQIHA 183 (335)
Q Consensus 150 ~g~~~a----~~d~v~~~DaD~~~-~~~~l~~l~~~~~~ 183 (335)
.|+... ..|+++++++|..+ .++.+.++++.+.+
T Consensus 84 ~~l~~l~~~~~~d~v~~l~~tsPl~~~~~I~~~i~~~~~ 122 (222)
T TIGR03584 84 HAIEELKLQKQYDHACCIYATAPFLQAKILKEAFELLKQ 122 (222)
T ss_pred HHHHHHhhcCCCCEEEEecCCCCcCCHHHHHHHHHHHHh
Confidence 888765 26999999999964 88999999999976
|
The sequences in this family include the pfam02348 (cytidyltransferase) domain and are homologous to the NeuA protein responsible for the transfer of CMP to neuraminic acid. According to, this gene is responsible for the transfer of CMP to the structurally related sugar, pseudaminic acid which is observed as a component of sugar modifications of flagellin in Campylobacter species. This gene is commonly observed in apparent operons with other genes responsible for the biosynthesis of pseudaminic acid and as a component of flagellar and exopolysaccharide biosynthesis loci. |
| >PRK14360 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=84.51 E-value=5.8 Score=38.19 Aligned_cols=97 Identities=15% Similarity=0.148 Sum_probs=60.9
Q ss_pred EEeccCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCcchHHHHHHHHHHcCCCcEEEEEcCCCCChHHHHHH
Q 019818 71 IIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNHGKGEAIRK 150 (335)
Q Consensus 71 iip~~ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~vi~~~~~~Gk~~aln~ 150 (335)
++|.-+ ...|..+|+++.+. ...+++++.....+. +++...+.. ++.++..+...|-+.++..
T Consensus 23 ll~v~g-kpli~~~l~~l~~~----------g~~~iivvv~~~~~~----i~~~~~~~~--~i~~v~~~~~~G~~~sv~~ 85 (450)
T PRK14360 23 LHPLGG-KSLVERVLDSCEEL----------KPDRRLVIVGHQAEE----VEQSLAHLP--GLEFVEQQPQLGTGHAVQQ 85 (450)
T ss_pred cCEECC-hhHHHHHHHHHHhC----------CCCeEEEEECCCHHH----HHHHhcccC--CeEEEEeCCcCCcHHHHHH
Confidence 455544 36677777776551 224566655432222 233323333 5777766556777888888
Q ss_pred HHHhcC--CCEEEEEeCCCC-CCcchHHHHHHHHHHh
Q 019818 151 GMLHSR--GELLLMLDADGA-TKVTDLEKLESQIHAV 184 (335)
Q Consensus 151 g~~~a~--~d~v~~~DaD~~-~~~~~l~~l~~~~~~~ 184 (335)
++.... .+.++++++|.. +.++.+.++++.+.+.
T Consensus 86 ~~~~l~~~~~~vlV~~~D~P~i~~~~l~~ll~~~~~~ 122 (450)
T PRK14360 86 LLPVLKGFEGDLLVLNGDVPLLRPETLEALLNTHRSS 122 (450)
T ss_pred HHHHhhccCCcEEEEeCCccccCHHHHHHHHHHHHhc
Confidence 887653 356788999984 6888999999887654
|
|
| >PRK00155 ispD 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=84.37 E-value=8.3 Score=33.26 Aligned_cols=94 Identities=14% Similarity=0.183 Sum_probs=58.1
Q ss_pred CCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCcchHHHHHHHHHHcCCCcEEEEEcCCCCChHHHHHHHHHhc
Q 019818 76 NEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNHGKGEAIRKGMLHS 155 (335)
Q Consensus 76 ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~vi~~~~~~Gk~~aln~g~~~a 155 (335)
++...+..+++.+.. ....-+|+|+.+... ..+..+....... ++.++.. ..+...++..|+...
T Consensus 29 ~g~pli~~~l~~l~~---------~~~~~~ivvv~~~~~--~~~~~~~~~~~~~--~~~~~~~--~~~~~~sv~~~l~~~ 93 (227)
T PRK00155 29 GGKPILEHTLEAFLA---------HPRIDEIIVVVPPDD--RPDFAELLLAKDP--KVTVVAG--GAERQDSVLNGLQAL 93 (227)
T ss_pred CCEEHHHHHHHHHHc---------CCCCCEEEEEeChHH--HHHHHHHhhccCC--ceEEeCC--cchHHHHHHHHHHhC
Confidence 455666666666654 222347777765322 1222222221111 3444432 235788899999876
Q ss_pred -CCCEEEEEeCCCC-CCcchHHHHHHHHHHh
Q 019818 156 -RGELLLMLDADGA-TKVTDLEKLESQIHAV 184 (335)
Q Consensus 156 -~~d~v~~~DaD~~-~~~~~l~~l~~~~~~~ 184 (335)
..|+++++|+|.. ++++.+.++++.+.++
T Consensus 94 ~~~d~vlv~~~D~P~i~~~~i~~li~~~~~~ 124 (227)
T PRK00155 94 PDDDWVLVHDAARPFLTPDDIDRLIEAAEET 124 (227)
T ss_pred CCCCEEEEccCccCCCCHHHHHHHHHHHhhC
Confidence 5789999999986 6999999999988654
|
|
| >TIGR01207 rmlA glucose-1-phosphate thymidylyltransferase, short form | Back alignment and domain information |
|---|
Probab=84.14 E-value=9 Score=34.63 Aligned_cols=99 Identities=15% Similarity=0.103 Sum_probs=61.3
Q ss_pred EEeccCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCcchHHHHHHHHHHc--CCCcEEEEEcCCCCChHHHH
Q 019818 71 IIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKY--TVDNVRIILLGRNHGKGEAI 148 (335)
Q Consensus 71 iip~~ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~--~~~~i~vi~~~~~~Gk~~al 148 (335)
++|+++. +.|.-.|+.+.. ..--+|++|..... .+.+++..... -+.++.++..++..|-+.|+
T Consensus 24 Llpv~gk-PmI~~~L~~l~~----------aGi~~I~iv~~~~~---~~~~~~~lg~g~~~g~~i~~~~q~~~~Gta~al 89 (286)
T TIGR01207 24 LLPIYDK-PMIYYPLSTLML----------AGIRDILIISTPQD---TPRFQQLLGDGSQWGVNLSYAVQPSPDGLAQAF 89 (286)
T ss_pred eeEECCE-EhHHHHHHHHHH----------CCCCEEEEEecCCc---HHHHHHHhccccccCceEEEEEccCCCCHHHHH
Confidence 7888887 777777777765 22357766653222 12222222111 11256666666678999999
Q ss_pred HHHHHhcCCCEEEEEeCCCCCCcchHHHHHHHHHH
Q 019818 149 RKGMLHSRGELLLMLDADGATKVTDLEKLESQIHA 183 (335)
Q Consensus 149 n~g~~~a~~d~v~~~DaD~~~~~~~l~~l~~~~~~ 183 (335)
..|......+-++++-+|..+....+..+++...+
T Consensus 90 ~~a~~~l~~~~~~li~gD~i~~~~~l~~ll~~~~~ 124 (286)
T TIGR01207 90 IIGEDFIGGDPSALVLGDNIFYGHDLSDLLKRAAA 124 (286)
T ss_pred HHHHHHhCCCCEEEEECCEeccccCHHHHHHHHHh
Confidence 99998876543444558876666778888776543
|
This model describes a tightly conserved but broadly distributed subfamily (here designated as short form) of known and putative bacterial glucose-1-phosphate thymidylyltransferases. It is well characterized in several species as the first of four enzymes involved in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme. |
| >PRK13368 3-deoxy-manno-octulosonate cytidylyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=83.46 E-value=20 Score=31.00 Aligned_cols=90 Identities=12% Similarity=0.216 Sum_probs=53.6
Q ss_pred CCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCcchHHHHHHHHHHcCCCcEEEEEcCC--CCChHHHHHHHHH
Q 019818 76 NEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGR--NHGKGEAIRKGML 153 (335)
Q Consensus 76 ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~vi~~~~--~~Gk~~aln~g~~ 153 (335)
+..+.|..+++.+.+ ...--+|+|+.|. +... +..+.+ ++.++..++ ..|.+ .+..++.
T Consensus 25 ~GkPli~~~i~~l~~---------~~~~~~ivv~t~~--~~i~----~~~~~~---~~~v~~~~~~~~~g~~-~~~~a~~ 85 (238)
T PRK13368 25 LGKPMIQHVYERAAQ---------AAGVEEVYVATDD--QRIE----DAVEAF---GGKVVMTSDDHLSGTD-RLAEVML 85 (238)
T ss_pred CCcCHHHHHHHHHHh---------cCCCCeEEEECCh--HHHH----HHHHHc---CCeEEecCccCCCccH-HHHHHHH
Confidence 345666666666655 1123567776542 3333 333333 344444332 23443 3555666
Q ss_pred hcCCCEEEEEeCCC-CCCcchHHHHHHHHHHh
Q 019818 154 HSRGELLLMLDADG-ATKVTDLEKLESQIHAV 184 (335)
Q Consensus 154 ~a~~d~v~~~DaD~-~~~~~~l~~l~~~~~~~ 184 (335)
....|.++++++|. .+.++.+.++++.+.+.
T Consensus 86 ~~~~d~~lv~~~D~P~i~~~~i~~l~~~~~~~ 117 (238)
T PRK13368 86 KIEADIYINVQGDEPMIRPRDIDTLIQPMLDD 117 (238)
T ss_pred hCCCCEEEEEcCCcCcCCHHHHHHHHHHHHHC
Confidence 66668999999999 47899999999988653
|
|
| >PRK14358 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=83.28 E-value=6.6 Score=38.39 Aligned_cols=96 Identities=14% Similarity=0.154 Sum_probs=61.4
Q ss_pred EEeccCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCcchHHHHHHHHHHcCCCcEEEEEcCCCCChHHHHHH
Q 019818 71 IIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNHGKGEAIRK 150 (335)
Q Consensus 71 iip~~ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~vi~~~~~~Gk~~aln~ 150 (335)
++|.-+. +.|..+++++... .--+|+++.....+ .+++.... .++.++..+...|.+.++..
T Consensus 29 llpi~gk-pli~~~l~~l~~~----------gi~~ivvv~~~~~~----~i~~~~~~---~~i~~v~~~~~~Gt~~al~~ 90 (481)
T PRK14358 29 LHPVAGR-PMVAWAVKAARDL----------GARKIVVVTGHGAE----QVEAALQG---SGVAFARQEQQLGTGDAFLS 90 (481)
T ss_pred ecEECCe-eHHHHHHHHHHhC----------CCCeEEEEeCCCHH----HHHHHhcc---CCcEEecCCCcCCcHHHHHH
Confidence 4566554 6777777766541 23567777653222 22332222 25777776667788999988
Q ss_pred HHHhcC--CCEEEEEeCCC-CCCcchHHHHHHHHHHh
Q 019818 151 GMLHSR--GELLLMLDADG-ATKVTDLEKLESQIHAV 184 (335)
Q Consensus 151 g~~~a~--~d~v~~~DaD~-~~~~~~l~~l~~~~~~~ 184 (335)
|++... .+-++++++|. .+.+..+.++++...+.
T Consensus 91 ~~~~l~~~~~~~lV~~gD~P~i~~~~l~~ll~~~~~~ 127 (481)
T PRK14358 91 GASALTEGDADILVLYGDTPLLRPDTLRALVADHRAQ 127 (481)
T ss_pred HHHHhhCCCCcEEEEeCCeeccCHHHHHHHHHHHHhc
Confidence 887753 23377899998 56788899998877554
|
|
| >PRK14353 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=82.75 E-value=6.3 Score=37.93 Aligned_cols=97 Identities=13% Similarity=0.117 Sum_probs=59.0
Q ss_pred EEeccCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCcchHHHHHHHHHHcCCCcEEEEEcCCCCChHHHHHH
Q 019818 71 IIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNHGKGEAIRK 150 (335)
Q Consensus 71 iip~~ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~vi~~~~~~Gk~~aln~ 150 (335)
++|.-+. ..|..+++.+.. ..--+|+++.....+.. .+...... ..+.++...+..|.+.++..
T Consensus 27 ll~v~gk-pli~~~l~~l~~----------~gi~~ivvv~~~~~~~i----~~~~~~~~-~~~~~~~~~~~~G~~~sl~~ 90 (446)
T PRK14353 27 LHPVAGR-PMLAHVLAAAAS----------LGPSRVAVVVGPGAEAV----AAAAAKIA-PDAEIFVQKERLGTAHAVLA 90 (446)
T ss_pred cCEECCc-hHHHHHHHHHHh----------CCCCcEEEEECCCHHHH----HHHhhccC-CCceEEEcCCCCCcHHHHHH
Confidence 4565453 666666666654 12346666664332222 22222221 13444444556788888888
Q ss_pred HHHhcC--CCEEEEEeCCC-CCCcchHHHHHHHHHH
Q 019818 151 GMLHSR--GELLLMLDADG-ATKVTDLEKLESQIHA 183 (335)
Q Consensus 151 g~~~a~--~d~v~~~DaD~-~~~~~~l~~l~~~~~~ 183 (335)
+++... .|.++++++|. .++++.+..+++..++
T Consensus 91 a~~~l~~~~~~~lv~~~D~P~i~~~~l~~l~~~~~~ 126 (446)
T PRK14353 91 AREALAGGYGDVLVLYGDTPLITAETLARLRERLAD 126 (446)
T ss_pred HHHHHhccCCCEEEEeCCcccCCHHHHHHHHHhHhc
Confidence 887753 47788899998 6788999999886543
|
|
| >KOG2287 consensus Galactosyltransferases [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=82.14 E-value=34 Score=31.97 Aligned_cols=193 Identities=13% Similarity=0.029 Sum_probs=103.5
Q ss_pred ceEEEEEeccCCCCChHHHHHHHHHHHHHhhhcCC---CCceEEEEEECCCCcch--HHHHHHHHHHcCCCcEEEEEcCC
Q 019818 66 KYISLIIPAFNEEHRLPGALDETLNYLQQRAAKDK---SFTYEVLIIDDGSSDGT--KRVAFDFVRKYTVDNVRIILLGR 140 (335)
Q Consensus 66 ~~vsViip~~ne~~~l~~~l~sl~~~~~~~~~~~~---~~~~eiivvdd~s~d~t--~~~~~~~~~~~~~~~i~vi~~~~ 140 (335)
|.+-++|...-+. ..+ +..++.+... +. ..+..++++-.-..++. ...+.+-++.+. .|.+....+
T Consensus 95 ~~lLl~V~S~~~~--far--R~aiR~TW~~---~~~v~~~~v~~~FLvG~~~~~~~~~~~l~~Ea~~yg--DIi~~df~D 165 (349)
T KOG2287|consen 95 PELLLLVKSAPDN--FAR--RNAIRKTWGN---ENNVRGGRVRVLFLVGLPSNEDKLNKLLADEARLYG--DIIQVDFED 165 (349)
T ss_pred ceEEEEEecCCCC--HHH--HHHHHHHhcC---ccccCCCcEEEEEEecCCCcHHHHHHHHHHHHHHhC--CEEEEeccc
Confidence 5566666664443 232 3334444331 12 23466666555444332 344444456666 677666665
Q ss_pred CCC----hH-HHHHHHHHhcC-CCEEEEEeCCCCCCcchHHHHHHHHHHhccccccCCCcccccccccccCCCeeeeecc
Q 019818 141 NHG----KG-EAIRKGMLHSR-GELLLMLDADGATKVTDLEKLESQIHAVGRKEYNHGDSVTVDSTFRISDIPIAAFGSR 214 (335)
Q Consensus 141 ~~G----k~-~aln~g~~~a~-~d~v~~~DaD~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~g~~ 214 (335)
+.. |. ..++.+...+. .++|+-+|+|..+.++.|.+.+.... .+.. ....|.-
T Consensus 166 ty~nltlKtl~~l~w~~~~cp~akfi~K~DDDvfv~~~~L~~~L~~~~-~~~~--------------------~~~~G~v 224 (349)
T KOG2287|consen 166 TYFNLTLKTLAILLWGVSKCPDAKFILKIDDDVFVNPDNLLEYLDKLN-DPSS--------------------DLYYGRV 224 (349)
T ss_pred chhchHHHHHHHHHHHHhcCCcceEEEeccCceEEcHHHHHHHHhccC-CCCc--------------------ceEEEee
Confidence 433 33 45677776664 79999999999999988777665542 1222 5566644
Q ss_pred hhhhhHhhhhhhhhHHHHHHHHHHHHHHHhC--CCCccCCCceeeeeHHHHHHhhhhhhh-c-cccchHHHHHHhHHc-C
Q 019818 215 AHLEEKALATRKWYRNFLMKGFHLVVILTAG--PGIRDTQCGFKMFTRAAARKLFTNIRL-K-RWCFDVELVYLCKRF-G 289 (335)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~g~~~~~r~~l~~i~~~~~~-~-~~~~D~el~~r~~~~-G 289 (335)
.... ...|..-++ .+....... .-.....|+..++++++.+.+...... . ...+|.-++.-++.. |
T Consensus 225 ~~~~-------~p~R~~~~K--wyVp~~~y~~~~YP~Y~sG~gYvis~~~a~~l~~~s~~~~~~~iEDV~~g~~l~~~~g 295 (349)
T KOG2287|consen 225 IQNA-------PPIRDKTSK--WYVPESEYPCSVYPPYASGPGYVISGDAARRLLKASKHLKFFPIEDVFVGGCLAEDLG 295 (349)
T ss_pred cccC-------CCCCCCCCC--CccCHHHCCCCCCCCcCCCceeEecHHHHHHHHHHhcCCCccchHHHHHHHHHHHhcC
Confidence 3210 001111000 001111111 122334555779999999999543221 1 223588888888887 7
Q ss_pred CCEEEeee
Q 019818 290 IPIIEISV 297 (335)
Q Consensus 290 ~~i~~~p~ 297 (335)
.+....+-
T Consensus 296 i~~~~~~~ 303 (349)
T KOG2287|consen 296 IKPVNHPG 303 (349)
T ss_pred CCcccCcc
Confidence 66666653
|
|
| >PRK14354 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=81.28 E-value=11 Score=36.37 Aligned_cols=94 Identities=10% Similarity=0.092 Sum_probs=60.1
Q ss_pred EEeccCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCcchHHHHHHHHHHcCCCcEEEEEcCCCCChHHHHHH
Q 019818 71 IIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNHGKGEAIRK 150 (335)
Q Consensus 71 iip~~ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~vi~~~~~~Gk~~aln~ 150 (335)
++|+-+. ..|..+++++.+. . -.+++++.....+ .+++.... .+.++..++..|.+.++..
T Consensus 24 ll~i~Gk-pli~~~l~~l~~~---------g-i~~iivvv~~~~~----~i~~~~~~----~~~~~~~~~~~g~~~al~~ 84 (458)
T PRK14354 24 LHKVCGK-PMVEHVVDSVKKA---------G-IDKIVTVVGHGAE----EVKEVLGD----RSEFALQEEQLGTGHAVMQ 84 (458)
T ss_pred hCEeCCc-cHHHHHHHHHHhC---------C-CCeEEEEeCCCHH----HHHHHhcC----CcEEEEcCCCCCHHHHHHH
Confidence 4566554 7777777777651 1 2456655432222 12222111 3455555556788888888
Q ss_pred HHHhcC--CCEEEEEeCCC-CCCcchHHHHHHHHHH
Q 019818 151 GMLHSR--GELLLMLDADG-ATKVTDLEKLESQIHA 183 (335)
Q Consensus 151 g~~~a~--~d~v~~~DaD~-~~~~~~l~~l~~~~~~ 183 (335)
++.... .|.++++++|. .++++.+.++++..++
T Consensus 85 a~~~l~~~~d~vlv~~~D~p~i~~~~l~~li~~~~~ 120 (458)
T PRK14354 85 AEEFLADKEGTTLVICGDTPLITAETLKNLIDFHEE 120 (458)
T ss_pred HHHHhcccCCeEEEEECCccccCHHHHHHHHHHHHh
Confidence 888764 47899999998 5788899999987754
|
|
| >PRK05450 3-deoxy-manno-octulosonate cytidylyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=80.91 E-value=22 Score=30.94 Aligned_cols=93 Identities=6% Similarity=0.136 Sum_probs=53.1
Q ss_pred EEeccCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCcchHHHHHHHHHHcCCCcEEEEEc--CCCCChHHHH
Q 019818 71 IIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILL--GRNHGKGEAI 148 (335)
Q Consensus 71 iip~~ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~vi~~--~~~~Gk~~al 148 (335)
++|. ++...|..+++.+... ...+|+|+.+ .+.. .+....+ ++.++.. +...|.+...
T Consensus 21 Ll~i-~Gkpll~~~l~~l~~~----------~i~~ivvv~~--~~~i----~~~~~~~---~~~v~~~~~~~~~gt~~~~ 80 (245)
T PRK05450 21 LADI-GGKPMIVRVYERASKA----------GADRVVVATD--DERI----ADAVEAF---GGEVVMTSPDHPSGTDRIA 80 (245)
T ss_pred cccc-CCcCHHHHHHHHHHhc----------CCCeEEEECC--cHHH----HHHHHHc---CCEEEECCCcCCCchHHHH
Confidence 3444 4456777777776552 2356776654 2222 2222332 3444443 2233544333
Q ss_pred HHHHHhc---CCCEEEEEeCCC-CCCcchHHHHHHHHHHh
Q 019818 149 RKGMLHS---RGELLLMLDADG-ATKVTDLEKLESQIHAV 184 (335)
Q Consensus 149 n~g~~~a---~~d~v~~~DaD~-~~~~~~l~~l~~~~~~~ 184 (335)
.++... ..+.++++++|. .++++.+.++++.+...
T Consensus 81 -~~~~~~~~~~~~~vlv~~~D~Pli~~~~l~~li~~~~~~ 119 (245)
T PRK05450 81 -EAAAKLGLADDDIVVNVQGDEPLIPPEIIDQVAEPLANP 119 (245)
T ss_pred -HHHHhcCCCCCCEEEEecCCCCCCCHHHHHHHHHHHhcC
Confidence 233332 458899999999 57999999999877543
|
|
| >PF09837 DUF2064: Uncharacterized protein conserved in bacteria (DUF2064); InterPro: IPR018641 This entry contains proteins that have no known function | Back alignment and domain information |
|---|
Probab=80.75 E-value=12 Score=29.19 Aligned_cols=78 Identities=12% Similarity=0.096 Sum_probs=42.5
Q ss_pred CCceEEEEEECCCCcchHHHHHHHHHHcCCCcEEEEEcCCCCChHHHHHHHHHhc--CCCEEEEEeCCCC-CCcchHHHH
Q 019818 101 SFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNHGKGEAIRKGMLHS--RGELLLMLDADGA-TKVTDLEKL 177 (335)
Q Consensus 101 ~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~vi~~~~~~Gk~~aln~g~~~a--~~d~v~~~DaD~~-~~~~~l~~l 177 (335)
....++++.-++..+..... +. ...+ .+.+.... ..+.+.-++.+++.+ ..+-|+++-+|+. ++++.|.+.
T Consensus 8 ~~~~~~~l~~~~~~~~~~~~--~~-~~~~--~~~~~~Q~-g~dLG~Rm~~a~~~~~~g~~~vvliGsD~P~l~~~~l~~A 81 (122)
T PF09837_consen 8 ADGADVVLAYTPDGDHAAFR--QL-WLPS--GFSFFPQQ-GGDLGERMANAFQQAARGYEPVVLIGSDCPDLTPDDLEQA 81 (122)
T ss_dssp TSSSEEEEEE----TTHHHH--HH-HH-T--TSEEEE---SSSHHHHHHHHHHHHHTT-SEEEEE-SS-TT--HHHHHHH
T ss_pred CCCcCEEEEEcCCccHHHHh--cc-ccCC--CCEEeecC-CCCHHHHHHHHHHHHHcCCCcEEEEcCCCCCCCHHHHHHH
Confidence 34577777777665554332 11 1112 45555543 345666677777776 4589999999995 688889888
Q ss_pred HHHHHHh
Q 019818 178 ESQIHAV 184 (335)
Q Consensus 178 ~~~~~~~ 184 (335)
.+.++++
T Consensus 82 ~~~L~~~ 88 (122)
T PF09837_consen 82 FEALQRH 88 (122)
T ss_dssp HHHTTT-
T ss_pred HHHhccC
Confidence 8888554
|
; PDB: 3CGX_A. |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 335 | ||||
| 3f1y_A | 387 | Mannosyl-3-Phosphoglycerate Synthase From Rubrobact | 5e-06 | ||
| 3l7m_A | 729 | Structure Of The Wall Teichoic Acid Polymerase Tagf | 2e-04 | ||
| 3l7i_A | 729 | Structure Of The Wall Teichoic Acid Polymerase Tagf | 2e-04 | ||
| 3l7j_A | 729 | Structure Of The Wall Teichoic Acid Polymerase Tagf | 2e-04 |
| >pdb|3F1Y|A Chain A, Mannosyl-3-Phosphoglycerate Synthase From Rubrobacter Xylanophilus Length = 387 | Back alignment and structure |
|
| >pdb|3L7M|A Chain A, Structure Of The Wall Teichoic Acid Polymerase Tagf, H548a Length = 729 | Back alignment and structure |
|
| >pdb|3L7I|A Chain A, Structure Of The Wall Teichoic Acid Polymerase Tagf Length = 729 | Back alignment and structure |
|
| >pdb|3L7J|A Chain A, Structure Of The Wall Teichoic Acid Polymerase Tagf, H444n V Length = 729 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3ckj_A Putative uncharacterized protein; mycobacteria, unknown function; HET: CIT; 1.80A {Mycobacterium paratuberculosis} PDB: 3ckn_A* 3cko_A* 3ckq_A* 3ckv_A* 3e26_A 3e25_A Length = 329 | Back alignment and structure |
|---|
Score = 91.6 bits (227), Expect = 3e-21
Identities = 35/200 (17%), Positives = 70/200 (35%), Gaps = 22/200 (11%)
Query: 68 ISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRK 127
IS+++PA +EE + +D + E++++D GS+D T+ A +
Sbjct: 50 ISVVLPALDEEDTIGSVIDSISPLV-------DGLVDELIVLDSGSTDDTEIRAVAAGAR 102
Query: 128 YTVDNVRIILLGRNHGKGEAIRKGMLHSRGELLLMLDADGAT-KVTDLEKLESQIHAVGR 186
+ + GKGEA+ + + SRG++++ +D+D + L +
Sbjct: 103 VVSREQALPEVPIRPGKGEALWRSLAASRGDIVVFVDSDLINPHPMFVPWLVGPLLT--- 159
Query: 187 KEYNHGDSVTVDSTFRISDIPIAAFGSRAHLEEKALATRKWYRNFLMKGFHLVVILTAGP 246
G + R ++ A G+ A + + L +
Sbjct: 160 ---GDGVHLVKSFYRRPLNVGDAGGGAGATG-------GGRVTELVARPL-LAALRPELG 208
Query: 247 GIRDTQCGFKMFTRAAARKL 266
I G TR +
Sbjct: 209 CILQPLGGEYAATRELLTSV 228
|
| >1qg8_A Protein (spore coat polysaccharide biosynthesis P SPSA); glycosyltransferase, transferase; 1.50A {Bacillus subtilis} SCOP: c.68.1.1 PDB: 1h7q_A* 1h7l_A 1qgq_A* 1qgs_A* Length = 255 | Back alignment and structure |
|---|
Score = 70.1 bits (172), Expect = 4e-14
Identities = 23/123 (18%), Positives = 50/123 (40%), Gaps = 24/123 (19%)
Query: 68 ISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFT-YEVLIIDDGSSDGTKRVAFDF-- 124
+S+I+ ++N+ + ++ L+ Q +F+ +E+ I+DD S++ T V F
Sbjct: 3 VSVIMTSYNKSDYVAKSISSILS---Q------TFSDFELFIMDDNSNEETLNVIRPFLN 53
Query: 125 ---VRKYTVDNVRIILLGRNHGKGEAIRKGMLHSRGELLLMLDADGATKVTDL---EKLE 178
VR Y D + I + + + GE + D ++ ++L
Sbjct: 54 DNRVRFYQSDISGVKERTEKTRYAALINQAIEMAEGEYITYATDD------NIYMPDRLL 107
Query: 179 SQI 181
+
Sbjct: 108 KMV 110
|
| >3f1y_A Mannosyl-3-phosphoglycerate synthase; GT-A type glycosyltransferase, GT-81, mannosyl-3-phosphoglyc synthase, GDP-mannose, transferas; 2.20A {Rubrobacter xylanophilus} PDB: 3kia_A* 3o3p_A* Length = 387 | Back alignment and structure |
|---|
Score = 71.4 bits (174), Expect = 4e-14
Identities = 38/199 (19%), Positives = 67/199 (33%), Gaps = 21/199 (10%)
Query: 68 ISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRK 127
+S ++P+ N + G +DE + ++L++D S DGT VA +
Sbjct: 96 VSAVLPSRNVADTVGGIIDEI-----HALNERAPLIDQILVVDADSEDGTAGVAASHGAE 150
Query: 128 YTVDNVRIILLGRNHGKGEAIRKGMLHSRGELLLMLDADGATKVTDLEKLESQIHAVGRK 187
+N + G HGKG+A+ + + +RG+L+L +DAD + + V
Sbjct: 151 VYSENELMSGYGDAHGKGDAMWRALSVTRGDLVLYIDADTRD--FRPQLAYGVLGPVLEV 208
Query: 188 EYNHGDSVTVDSTFRISDIPIAAFGSRAHLEEKALATRKWYRNFLMKGFHLVVILTAGPG 247
FR + G R L + + F G
Sbjct: 209 PGVRFVKAAYRRPFRKGESIEEDGGGRVT----ELTAKPLFNLF----------YPELAG 254
Query: 248 IRDTQCGFKMFTRAAARKL 266
G + R +
Sbjct: 255 FVQPLAGEFVADRELFCSI 273
|
| >2z86_A Chondroitin synthase; GT-A, glycosyltransferase A, fold; HET: UGA UDP; 2.40A {Escherichia coli} PDB: 2z87_A* Length = 625 | Back alignment and structure |
|---|
Score = 70.0 bits (171), Expect = 2e-13
Identities = 38/246 (15%), Positives = 79/246 (32%), Gaps = 36/246 (14%)
Query: 68 ISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRK 127
+S++IP +N L L N Q+ D YEV++ DDGS + + + VR+
Sbjct: 95 LSIVIPTYNRAKILAITLACLCN---QKTIYD----YEVIVADDGSKENIEEI----VRE 143
Query: 128 YTVDNVRIILLGRNHGKG--EAIRKGMLHSRGELLLMLDADGATKVTDL---EKLESQIH 182
+ + +++G G+ ++ + +LD D ++S +
Sbjct: 144 FESLLNIKYVRQKDYGYQLCAVRNLGLRAAKYNYVAILDCD------MAPNPLWVQSYME 197
Query: 183 A---------VGRKEYNHGDSVTVDSTFRISDIPIAAFGSRAHLEEKALATRKWYRNFLM 233
+G ++Y T + + + + ++ +
Sbjct: 198 LLAVDDNVALIGPRKYIDTSKHTYLDFLSQKSLINEIPEIITNNQVAGKVEQNKSVDWRI 257
Query: 234 KGF-HLVVILTAGPGIRDTQCGFKMFTRAAARK--LFTNIRLKRW-CFDVELVYLCKRFG 289
+ F + + R G F + + F + W D E Y R G
Sbjct: 258 EHFKNTDNLRLCNTPFRFFSGGNVAFAKKWLFRAGWF-DEEFTHWGGEDNEFGYRLYREG 316
Query: 290 IPIIEI 295
+
Sbjct: 317 CYFRSV 322
|
| >2z86_A Chondroitin synthase; GT-A, glycosyltransferase A, fold; HET: UGA UDP; 2.40A {Escherichia coli} PDB: 2z87_A* Length = 625 | Back alignment and structure |
|---|
Score = 64.6 bits (157), Expect = 1e-11
Identities = 31/123 (25%), Positives = 54/123 (43%), Gaps = 28/123 (22%)
Query: 68 ISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTY---EVLIIDDGSSDGTKRVAFDF 124
+S+ IPA+N + ++ LN Q T EV I DDGS+D T R+
Sbjct: 377 VSIYIPAYNCSKYIVRCVESALN---Q--------TITDLEVCICDDGSTDDTLRI---- 421
Query: 125 VRKYTVDNVRIILLGR-NHGKGEAIRKGMLHSRGELLLMLDADGATKVTDL---EKLESQ 180
++++ ++ R+ + + N G G A + RG + LD+D D + +E
Sbjct: 422 LQEHYANHPRVRFISQKNKGIGSASNTAVRLCRGFYIGQLDSD------DFLEPDAVELC 475
Query: 181 IHA 183
+
Sbjct: 476 LDE 478
|
| >3l7i_A Teichoic acid biosynthesis protein F; GT-B fold, monotopic membrane protein, structural protein; 2.70A {Staphylococcus epidermidis} PDB: 3l7j_A 3l7k_A* 3l7l_A* 3l7m_A* Length = 729 | Back alignment and structure |
|---|
Score = 67.7 bits (165), Expect = 1e-12
Identities = 25/99 (25%), Positives = 47/99 (47%), Gaps = 9/99 (9%)
Query: 68 ISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRK 127
+++I+ +N E + G L+ QR + ++I++DGS+D +K++ + ++
Sbjct: 4 LTIIVTYYNAEEYITGCLESIKQ---QRTQD-----FNLIIVNDGSTDQSKKLMDEAIKD 55
Query: 128 YTVDNVRIILLGRNHGKGEAIRKGMLHSRGELLLMLDAD 166
Y N+R I L N G A + + LDAD
Sbjct: 56 YD-KNIRFIDLDENSGHAHARNIALEEVETPYFMFLDAD 93
|
| >2bo4_A Mannosylglycerate synthase; catalysis, glycosyltransferase, mannose, transferase, stereoselectivity; HET: FLC; 1.95A {Rhodothermus marinus} SCOP: c.68.1.18 PDB: 2bo6_A 2bo7_A* 2bo8_A* 2xw2_A 2y4j_A 2xw3_A* 2xw4_A* 2xw5_A* 2y4k_A* 2y4l_A* 2y4m_A* Length = 397 | Back alignment and structure |
|---|
Score = 55.9 bits (134), Expect = 5e-09
Identities = 31/244 (12%), Positives = 63/244 (25%), Gaps = 48/244 (19%)
Query: 68 ISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRK 127
++ P +E + + ++ D T +
Sbjct: 2 SLVVFPFKHEHPEVLLHNVRVAAAHPR---------VHEVLCIGYERDQTYEAVERAAPE 52
Query: 128 -YTVDNVRIILLGRNH------GKGEAIRKGM----LHSRGELLLMLDADGATKVTDLEK 176
+ + + GKG+ + + ++ E + DAD + +
Sbjct: 53 ISRATGTPVSVRLQERLGTLRPGKGDGMNTALRYFLEETQWERIHFYDADITS--FGPDW 110
Query: 177 LESQIHAVGRKEYNHGDSVTVDSTFRISDIPIAAFGSRAHLEEKALATRKWYRNFLMKGF 236
+ A Y + F RA + GF
Sbjct: 111 ITKAEEAA-DFGY---------------GLVRHYF-PRASTDAMIT------WMITRTGF 147
Query: 237 HLVVILTAGPGIRDTQCGFKMFTRAAARKLFTNIRL---KRWCFDVELVYLCKRFGIPII 293
L+ T I G + R A L+ + R+ W D ++ + G+ I
Sbjct: 148 ALLWPHTELSWIEQPLGGELLMRREVAAMLYEDERVRRRSDWGIDTLYTFVTVQQGVSIY 207
Query: 294 EISV 297
E +
Sbjct: 208 ECYI 211
|
| >3bcv_A Putative glycosyltransferase protein; protein structure initiative II, PSI-II NYSGXRC, structural genomics; 2.35A {Bacteroides fragilis} Length = 240 | Back alignment and structure |
|---|
Score = 52.2 bits (126), Expect = 4e-08
Identities = 27/100 (27%), Positives = 49/100 (49%), Gaps = 13/100 (13%)
Query: 68 ISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFT-YEVLIIDDGSSDGTKRVAFDFVR 126
+S+I+P +N E L + L Q + + E+++IDD S D ++ D+
Sbjct: 7 VSVIVPIYNVEKYLDQCVQALLA---Q------TLSDIEIILIDDESPDNCPKICDDYAA 57
Query: 127 KYTVDNVRIILLGRNHGKGEAIRKGMLHSRGELLLMLDAD 166
+Y N+++I +N G G A G+ + GE + D+D
Sbjct: 58 QY--PNIKVIHK-KNAGLGMACNSGLDVATGEYVAFCDSD 94
|
| >2d7i_A Polypeptide N-acetylgalactosaminyltransferase 10; beta trefoil, rossmann fold; HET: NAG NGA UDP; 2.50A {Homo sapiens} PDB: 2d7r_A* Length = 570 | Back alignment and structure |
|---|
Score = 51.4 bits (122), Expect = 2e-07
Identities = 27/116 (23%), Positives = 51/116 (43%), Gaps = 8/116 (6%)
Query: 68 ISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGT-KRVAFDFVR 126
S+IIP NE +L T++ + R+ + E++++DD S K+ D++
Sbjct: 114 TSIIIPFHNEG---WSSLLRTVHSVLNRSPPE--LVAEIVLVDDFSDREHLKKPLEDYMA 168
Query: 127 KYTVDNVRIILLGRNHGKGEAIRKGMLHSRGELLLMLDADGATKVTDLEKLESQIH 182
+ +VRI+ + G G + G+++ LD+ V L L +I
Sbjct: 169 LF--PSVRILRTKKREGLIRTRMLGASVATGDVITFLDSHCEANVNWLPPLLDRIA 222
|
| >1xhb_A Polypeptide N-acetylgalactosaminyltransferase 1; glycosyltransferase-A (GT-A); HET: NAG BMA; 2.50A {Mus musculus} SCOP: b.42.2.1 c.68.1.17 Length = 472 | Back alignment and structure |
|---|
Score = 49.8 bits (118), Expect = 6e-07
Identities = 28/100 (28%), Positives = 47/100 (47%), Gaps = 7/100 (7%)
Query: 68 ISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDG-TKRVAFDFVR 126
S++I NE L T++ + R+ + E++++DD S KR +V+
Sbjct: 31 TSVVIVFHNEAWST---LLRTVHSVINRSPRHMI--EEIVLVDDASERDFLKRPLESYVK 85
Query: 127 KYTVDNVRIILLGRNHGKGEAIRKGMLHSRGELLLMLDAD 166
K V V +I + + G A KG SRG+++ LDA
Sbjct: 86 KLKV-PVHVIRMEQRSGLIRARLKGAAVSRGQVITFLDAH 124
|
| >2ffu_A Ppgalnact-2, polypeptide N-acetylgalactosaminyltransferase 2, protein-UDP; ppgalnact, mucin, glycosyltransferase; HET: UDP; 1.64A {Homo sapiens} PDB: 2ffv_A* Length = 501 | Back alignment and structure |
|---|
Score = 48.2 bits (114), Expect = 2e-06
Identities = 24/117 (20%), Positives = 50/117 (42%), Gaps = 14/117 (11%)
Query: 68 ISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRK 127
S++I NE AL T+ + +++ E++++DD S+D + K
Sbjct: 68 TSVVITFHNEARS---ALLRTVVSVLKKSPPHLI--KEIILVDDYSNDPEDGALLGKIEK 122
Query: 128 YTVDNVRIILLGRNHGKGEAIRKGMLHSRGELLLMLDADGATKVTD--LEKLESQIH 182
VR++ R G + +G ++ ++L LD+ + + LE L ++
Sbjct: 123 -----VRVLRNDRREGLMRSRVRGADAAQAKVLTFLDSH--CECNEHWLEPLLERVA 172
|
| >4fix_A UDP-galactofuranosyl transferase GLFT2; CAZY GT-2 family, glycosyltrans carbohydrate binding, membrane; 2.45A {Mycobacterium tuberculosis} PDB: 4fiy_A* Length = 657 | Back alignment and structure |
|---|
Score = 41.6 bits (97), Expect = 3e-04
Identities = 37/247 (14%), Positives = 67/247 (27%), Gaps = 24/247 (9%)
Query: 59 SVTDPAEKYISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTK 118
+ P I++ IP FN AL E V++ D G
Sbjct: 173 TSPAPGTANIAVGIPTFNRPADCVNALRELTADPLVDQVIG-----AVIVPDQGERKVRD 227
Query: 119 RVAFDFVRKYTVDNVRIILLGRNHG--KG--EAIRKGMLHSRGELLLMLDADGATKVTDL 174
F + I N G G + + + ++ + +L +D D + +
Sbjct: 228 HPDFPAAAARLGSRLSIH-DQPNLGGSGGYSRVMYEALKNTDCQQILFMDDDIRLEPDSI 286
Query: 175 EKL------ESQIHAVGRKEYNHGDSVTVDSTFRISDIPIAAF--GSRAHLEEKALATRK 226
++ VG + N + + + D I + A +
Sbjct: 287 LRVLAMHRFAKAPMLVGGQMLNLQEPSHLHIMGEVVDRSIFMWTAAPHAEYDHDFAEYPL 346
Query: 227 WYRNFLMKGFHLVVILTAGPGIRDTQCGFKMFTRAAARKLFTNIRLKRWCFDVELVYLCK 286
N K H + + M R A +L + L D +
Sbjct: 347 NDNNSRSKLLHRRIDVDYNGW-----WTC-MIPRQVAEELGQPLPLFIKWDDADYGLRAA 400
Query: 287 RFGIPII 293
G P +
Sbjct: 401 EHGYPTV 407
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 41.4 bits (96), Expect = 4e-04
Identities = 40/295 (13%), Positives = 92/295 (31%), Gaps = 88/295 (29%)
Query: 51 SLKQVPCP-SVTDPAEKYISLIIPAFNEEHRLPGALDETLNYLQQRAA---KDKSFTYEV 106
+LK P +V + +K + I P + + ++ +Q K K + +
Sbjct: 188 NLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCL 247
Query: 107 LIIDDGSSDGTKRV--AFDFVRKYTVDNVRIILLGRN-------------HGKGEAIRKG 151
L++ + + + AF+ + +I+L R H +
Sbjct: 248 LVLLNVQN---AKAWNAFNL-------SCKILLTTRFKQVTDFLSAATTTHISLDHHSMT 297
Query: 152 MLHSRGELLLMLDADGATKVTDLEKLESQIHAVGRKEYNHGDSVTVDSTFRISDIP--IA 209
+ + LL+ D + DL + + P ++
Sbjct: 298 LTPDEVKSLLLKYLD--CRPQDLPREVLTTN------------------------PRRLS 331
Query: 210 AFGSRAHLEEKALATRKWYRNFLMKGFHLVVILTAGPGIRDTQCGFKMFTRAAARKLFTN 269
+ + LAT +++ ++ + + A RK+F
Sbjct: 332 IIA--ESIRDG-LATWDNWKHVNCDKLTTII-----------ESSLNVLEPAEYRKMFDR 377
Query: 270 IRLKRWCF--DVELVYLCKRFGIPIIEISVNWSEIPGSKVNPLSIPNMLWELALM 322
+ + F IP I +S+ W ++ K + + + N L + +L+
Sbjct: 378 LSV----FPPSAH---------IPTILLSLIWFDVI--KSDVMVVVNKLHKYSLV 417
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 335 | |||
| 3f1y_A | 387 | Mannosyl-3-phosphoglycerate synthase; GT-A type gl | 99.96 | |
| 3bcv_A | 240 | Putative glycosyltransferase protein; protein stru | 99.96 | |
| 3ckj_A | 329 | Putative uncharacterized protein; mycobacteria, un | 99.95 | |
| 1qg8_A | 255 | Protein (spore coat polysaccharide biosynthesis P | 99.95 | |
| 4hg6_A | 802 | Cellulose synthase subunit A; membrane translocati | 99.94 | |
| 1xhb_A | 472 | Polypeptide N-acetylgalactosaminyltransferase 1; g | 99.94 | |
| 2d7i_A | 570 | Polypeptide N-acetylgalactosaminyltransferase 10; | 99.93 | |
| 2ffu_A | 501 | Ppgalnact-2, polypeptide N-acetylgalactosaminyltra | 99.92 | |
| 2bo4_A | 397 | Mannosylglycerate synthase; catalysis, glycosyltra | 99.92 | |
| 2z86_A | 625 | Chondroitin synthase; GT-A, glycosyltransferase A, | 99.92 | |
| 4fix_A | 657 | UDP-galactofuranosyl transferase GLFT2; CAZY GT-2 | 99.91 | |
| 2z86_A | 625 | Chondroitin synthase; GT-A, glycosyltransferase A, | 99.89 | |
| 3l7i_A | 729 | Teichoic acid biosynthesis protein F; GT-B fold, m | 99.88 | |
| 2zu9_A | 394 | Mannosyl-3-phosphoglycerate synthase; GT-A fold, g | 99.77 | |
| 2nxv_A | 249 | ATP synthase subunits region ORF 6; majastridin, A | 99.76 | |
| 2wvl_A | 391 | Mannosyl-3-phosphoglycerate synthase; GT-A fold, t | 99.7 | |
| 2fy7_A | 287 | Beta-1,4-galactosyltransferase 1; M339H mutant, AP | 99.67 | |
| 1fo8_A | 343 | Alpha-1,3-mannosyl-glycoprotein beta-1,2-N- acetyl | 98.9 | |
| 2c0n_A | 203 | A197; thermophil protein, thermophilic virus, STIV | 97.95 | |
| 3lw6_A | 287 | FI08434P, beta-4-galactosyltransferase 7; protein- | 97.78 | |
| 1v84_A | 253 | Galactosylgalactosylxylosylprotein 3-beta- glucuro | 94.72 | |
| 3cu0_A | 281 | Galactosylgalactosylxylosylprotein 3-beta- glucuro | 94.27 | |
| 1qwj_A | 229 | Cytidine monophospho-N-acetylneuraminic acid synth | 93.68 | |
| 1omz_A | 293 | Alpha-1,4-N-acetylhexosaminyltransferase EXTL2; ro | 92.7 | |
| 3k8d_A | 264 | 3-deoxy-manno-octulosonate cytidylyltransferase; K | 92.68 | |
| 3oam_A | 252 | 3-deoxy-manno-octulosonate cytidylyltransferase; c | 92.39 | |
| 2d0j_A | 246 | Galactosylgalactosylxylosylprotein 3-beta- glucuro | 92.18 | |
| 3tqd_A | 256 | 3-deoxy-manno-octulosonate cytidylyltransferase; c | 92.1 | |
| 1h7e_A | 245 | 3-deoxy-manno-octulosonate cytidylyltransferase; n | 91.35 | |
| 2wee_A | 197 | MOBA-related protein; unknown function; 1.65A {Myc | 90.85 | |
| 2waw_A | 199 | MOBA relate protein; unknown function; HET: PGE; 1 | 90.47 | |
| 3st8_A | 501 | Bifunctional protein GLMU; acetyltransferase, pyro | 89.87 | |
| 1ezi_A | 228 | CMP-N-acetylneuraminic acid synthetase; homodimer, | 89.48 | |
| 4fcu_A | 253 | 3-deoxy-manno-octulosonate cytidylyltransferase; s | 89.39 | |
| 3ngw_A | 208 | Molybdopterin-guanine dinucleotide biosynthesis P | 88.73 | |
| 1vgw_A | 231 | 4-diphosphocytidyl-2C-methyl-D-erythritol synthas; | 88.33 | |
| 4fce_A | 459 | Bifunctional protein GLMU; GLMU. csgid, niaid, str | 87.4 | |
| 2y6p_A | 234 | 3-deoxy-manno-octulosonate cytidylyltransferase; l | 86.99 | |
| 3juk_A | 281 | UDP-glucose pyrophosphorylase (GALU); transfer; HE | 86.82 | |
| 2qh5_A | 308 | PMI, ALGA, mannose-6-phosphate isomerase; structur | 86.35 | |
| 2yc3_A | 228 | 2-C-methyl-D-erythritol 4-phosphate cytidylyltran | 86.2 | |
| 1e5k_A | 201 | Molybdopterin-guanine dinucleotide biosynthesis pr | 86.12 | |
| 4ecm_A | 269 | Glucose-1-phosphate thymidylyltransferase; HET: DA | 85.8 | |
| 3pnn_A | 303 | Conserved domain protein; structural genomics, PSI | 85.52 | |
| 3f1c_A | 246 | Putative 2-C-methyl-D-erythritol 4-phosphate cytid | 85.38 | |
| 1vic_A | 262 | 3-deoxy-manno-octulosonate cytidylyltransferase; s | 83.99 | |
| 3q80_A | 231 | 2-C-methyl-D-erythritol 4-phosphate cytidyltransf; | 83.96 | |
| 3d5n_A | 197 | Q97W15_sulso; NESG, SSR125, structural genomics, P | 83.83 | |
| 2ux8_A | 297 | Glucose-1-phosphate uridylyltransferase; UGPG, GAL | 83.08 | |
| 2xwl_A | 223 | 2-C-methyl-D-erythritol 4-phosphate cytidylyltran; | 82.76 | |
| 2vsh_A | 236 | TARI, 2-C-methyl-D-erythritol 4-phosphate cytidyly | 82.69 | |
| 2j0a_A | 280 | Beta-1,3-N-acetylglucosaminyltransferase manic FR; | 82.65 | |
| 2v0h_A | 456 | Bifunctional protein GLMU; cell WALL, magnesium, c | 82.55 | |
| 3rsb_A | 196 | Adenosylcobinamide-phosphate guanylyltransferase; | 81.65 | |
| 2e8b_A | 201 | Probable molybdopterin-guanine dinucleotide biosy | 80.83 | |
| 1fxo_A | 293 | Glucose-1-phosphate thymidylyltransferase; rhamnos | 80.01 |
| >3f1y_A Mannosyl-3-phosphoglycerate synthase; GT-A type glycosyltransferase, GT-81, mannosyl-3-phosphoglyc synthase, GDP-mannose, transferas; 2.20A {Rubrobacter xylanophilus} PDB: 3kia_A* 3o3p_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=3.8e-29 Score=233.78 Aligned_cols=213 Identities=17% Similarity=0.176 Sum_probs=154.8
Q ss_pred CceEEEEEeccCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCcchHHHHHHHHHHcCCCcEEEEEcCCCCCh
Q 019818 65 EKYISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNHGK 144 (335)
Q Consensus 65 ~~~vsViip~~ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~vi~~~~~~Gk 144 (335)
.|+||||||+|||++.|.++|+++.+++.+ ...++|||||||||+|+|.++++++..+.....++++..+.|.||
T Consensus 93 ~p~vSVVIP~yNe~~~l~~~l~sl~~~l~~-----~~~~~EIIVVDDgStD~T~~i~~~~~~~v~~~~~~~i~~~~n~G~ 167 (387)
T 3f1y_A 93 GLTVSAVLPSRNVADTVGGIIDEIHALNER-----APLIDQILVVDADSEDGTAGVAASHGAEVYSENELMSGYGDAHGK 167 (387)
T ss_dssp TCCEEEEEEESSCTTTHHHHHHHHHHHHHH-----SCCCSEEEEEECSCSSSHHHHHHHTTCEEEEGGGTTGGGCSCCSH
T ss_pred CCeEEEEEEcCCCHHHHHHHHHHHHHHHhc-----CCCCeEEEEEcCcCCccHHHHHHHhCchhcccceeEecCCccCCH
Confidence 477999999999999999999999875543 445799999999999999999988744311112223445679999
Q ss_pred HHHHHHHHHhcCCCEEEEEeCCCC-CCcchHHHHHHHHHHhccccccCCCcccccccccccCCCeeeeecchhhhhHh-h
Q 019818 145 GEAIRKGMLHSRGELLLMLDADGA-TKVTDLEKLESQIHAVGRKEYNHGDSVTVDSTFRISDIPIAAFGSRAHLEEKA-L 222 (335)
Q Consensus 145 ~~aln~g~~~a~~d~v~~~DaD~~-~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~g~~~~~~~~~-~ 222 (335)
+.|+|.|++.|+||+|+++|+|+. ++|++|.++++.+.++++. ++|.|++......+ .
T Consensus 168 g~A~n~G~~~A~gd~i~~lDaD~~~~~p~~L~~l~~~l~~~p~~--------------------d~v~G~~~~~~~~~~~ 227 (387)
T 3f1y_A 168 GDAMWRALSVTRGDLVLYIDADTRDFRPQLAYGVLGPVLEVPGV--------------------RFVKAAYRRPFRKGES 227 (387)
T ss_dssp HHHHHHHTTTCCSSEEEECCTTCSSCCTHHHHTTHHHHHHSTTC--------------------CEEEEEEECC------
T ss_pred HHHHHHHHHhcCCCEEEEEcCCCCcCCHHHHHHHHHHHHHCCCc--------------------eEEEEeeccccccccc
Confidence 999999999999999999999999 8999999999999875433 78888764321110 0
Q ss_pred hhhhhhHHHHHHHHHHHHHHHhC--CCCccCCCceeeeeHHHHHHhhhhhhhccccchHHHHHHhH-HcCCC-EEEeeeE
Q 019818 223 ATRKWYRNFLMKGFHLVVILTAG--PGIRDTQCGFKMFTRAAARKLFTNIRLKRWCFDVELVYLCK-RFGIP-IIEISVN 298 (335)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~g~~~~~r~~l~~i~~~~~~~~~~~D~el~~r~~-~~G~~-i~~~p~~ 298 (335)
..............+.+.+.... ..+.++.||+++|+|++++++ .. ..+|++|.+++.++. +.|++ |.++|+.
T Consensus 228 ~~~~~~g~v~~~~~~~l~~~~~~~l~~~~d~~sG~~a~rR~~l~~i--~f-~~gyg~e~ell~~~~~~~G~~~I~eVpi~ 304 (387)
T 3f1y_A 228 IEEDGGGRVTELTAKPLFNLFYPELAGFVQPLAGEFVADRELFCSI--PF-LTGYAVETGIMIDVLKKVGLGAMAQVDLG 304 (387)
T ss_dssp -CCBCCSHHHHHTHHHHHHHHCGGGTTCSCTTCSCEEEEHHHHTTS--CE-ECSTTHHHHHHHHHHHHHCGGGEEEEEEE
T ss_pred cccccCCchhhhhHHHHHHHHhHhhccccccccccEEEEHHHHHhC--CC-CCCcchHHHHHHHHHHhcCCCeEEEEecc
Confidence 00011111111111222222111 257888999999999999998 22 378899999999985 56997 9999998
Q ss_pred EEecCCC
Q 019818 299 WSEIPGS 305 (335)
Q Consensus 299 ~~~~~~s 305 (335)
+++...+
T Consensus 305 ~~~h~~~ 311 (387)
T 3f1y_A 305 ERQNRHQ 311 (387)
T ss_dssp ECCCCCC
T ss_pred eeecCCC
Confidence 8765443
|
| >3bcv_A Putative glycosyltransferase protein; protein structure initiative II, PSI-II NYSGXRC, structural genomics; 2.35A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.96 E-value=6.2e-28 Score=211.19 Aligned_cols=200 Identities=17% Similarity=0.199 Sum_probs=141.3
Q ss_pred CceEEEEEeccCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCcchHHHHHHHHHHcCCCcEEEEEcCCCCCh
Q 019818 65 EKYISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNHGK 144 (335)
Q Consensus 65 ~~~vsViip~~ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~vi~~~~~~Gk 144 (335)
.|+||||||+||+++.|.+||+|+++ |.+.++|||||||||+|+|.++++++.++++ ++++++ .+|.|+
T Consensus 4 ~p~vsViIp~yn~~~~l~~~l~Sl~~--------q~~~~~eiIvvDd~S~d~t~~~~~~~~~~~~--~i~~i~-~~n~G~ 72 (240)
T 3bcv_A 4 IPKVSVIVPIYNVEKYLDQCVQALLA--------QTLSDIEIILIDDESPDNCPKICDDYAAQYP--NIKVIH-KKNAGL 72 (240)
T ss_dssp CCSEEEEEEESSCTTTHHHHHHHHHT--------CSSSSEEEEEEECCCSSSHHHHHHHHHHHCS--SEEEEE-CCCCCH
T ss_pred CCcEEEEEecCCCHHHHHHHHHHHHh--------CcCCCeEEEEEECCCCcCHHHHHHHHHhhCC--CEEEEE-CCCCCh
Confidence 46799999999999999999999987 5777999999999999999999999999988 899997 469999
Q ss_pred HHHHHHHHHhcCCCEEEEEeCCCCCCcchHHHHHHHHHHhccccccCCCcccccccccccCCCeeeeecchhhhhHh---
Q 019818 145 GEAIRKGMLHSRGELLLMLDADGATKVTDLEKLESQIHAVGRKEYNHGDSVTVDSTFRISDIPIAAFGSRAHLEEKA--- 221 (335)
Q Consensus 145 ~~aln~g~~~a~~d~v~~~DaD~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~g~~~~~~~~~--- 221 (335)
+.|+|.|++.|+||||+++|+|+.++|++|+++++.+++.. . +++.+.........
T Consensus 73 ~~a~N~g~~~a~g~~i~~lD~Dd~~~~~~l~~l~~~~~~~~-~--------------------~~v~~~~~~~~~~~~~~ 131 (240)
T 3bcv_A 73 GMACNSGLDVATGEYVAFCDSDDYVDSDMYMTMYNVAQKYT-C--------------------DAVFTGLKRITMAGIPT 131 (240)
T ss_dssp HHHHHHHHHHCCSSEEEECCTTCCCCTTHHHHHHHHHHHHT-C--------------------SEEEC------------
T ss_pred HHHHHHHHHHcCCCEEEEECCCCcCCHHHHHHHHHHHHhcC-C--------------------CEEEEeeEEEccCCccc
Confidence 99999999999999999999999999999999999998742 2 34444322111111
Q ss_pred --hhhhhhhHHHH-HHHHHHHHHHHhCCCC-------ccCCCceeeeeHHHHHHhh-hhhhh-ccccchHHHHHHhHHcC
Q 019818 222 --LATRKWYRNFL-MKGFHLVVILTAGPGI-------RDTQCGFKMFTRAAARKLF-TNIRL-KRWCFDVELVYLCKRFG 289 (335)
Q Consensus 222 --~~~~~~~~~~~-~~~~~~~~~~~~~~~~-------~~~~~g~~~~~r~~l~~i~-~~~~~-~~~~~D~el~~r~~~~G 289 (335)
........... ............+... ....+++.+|||++++++. +.... ....+|.+|+.|+..+|
T Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rr~~~~~~g~~f~~~~~~~~eD~~~~~r~~~~g 211 (240)
T 3bcv_A 132 GTVTHQKEFKLYKNKNEIHTLLKDLIASDPYAREERAIQVSAKVVLYRRNLIEKKHLRFVSERILPSEDLIFNVDVLANS 211 (240)
T ss_dssp --------CEEECSHHHHHHHHGGGTSSCHHHHHHHHHHHTCSCEEEEHHHHHHTTCCCCCTTTCTTHHHHHHHHHHTTC
T ss_pred cccccccccccccCHHHHHHHHHHHhhcchhhccccccccchhheeeeHHHHHHcCCccCCCCCccCCCHHHHHHHHHhC
Confidence 00000000000 0000001111111100 0123445699999999973 22221 22458999999999999
Q ss_pred CCEEEee
Q 019818 290 IPIIEIS 296 (335)
Q Consensus 290 ~~i~~~p 296 (335)
+++.++|
T Consensus 212 ~~i~~~~ 218 (240)
T 3bcv_A 212 NIVCVLP 218 (240)
T ss_dssp SCEEECC
T ss_pred CEEEEEC
Confidence 9999998
|
| >3ckj_A Putative uncharacterized protein; mycobacteria, unknown function; HET: CIT; 1.80A {Mycobacterium paratuberculosis} PDB: 3ckn_A* 3cko_A* 3ckq_A* 3ckv_A* 3e26_A 3e25_A | Back alignment and structure |
|---|
Probab=99.95 E-value=1.1e-26 Score=213.66 Aligned_cols=213 Identities=16% Similarity=0.137 Sum_probs=149.9
Q ss_pred CCceEEEEEeccCCCCChHHHHHHHHHHHHHhhhcCCCC-ceEEEEEECCCCcchHHHHHHHHHHcCCCcEEEEE-cCCC
Q 019818 64 AEKYISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSF-TYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIIL-LGRN 141 (335)
Q Consensus 64 ~~~~vsViip~~ne~~~l~~~l~sl~~~~~~~~~~~~~~-~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~vi~-~~~~ 141 (335)
..|+||||||+|||++.|.++|++++++ .++ .+|||||||||+|+|.++++++..+... +++++. .++|
T Consensus 46 ~~~~vSViIp~yN~~~~l~~~l~sl~~q--------~~~~~~eiivVDdgS~D~t~~~~~~~~~~~~~-~~~~~~~~~~n 116 (329)
T 3ckj_A 46 AGRTISVVLPALDEEDTIGSVIDSISPL--------VDGLVDELIVLDSGSTDDTEIRAVAAGARVVS-REQALPEVPIR 116 (329)
T ss_dssp TTCCEEEEEEESSCTTTHHHHHHHHGGG--------BTTTBSEEEEEECSCCSSHHHHHHHTTCEEEE-HHHHCTTSCCC
T ss_pred cCCcEEEEEeeCCCHHHHHHHHHHHHHh--------hCCCCcEEEEEeCCCCchHHHHHHHhhhhhcc-ceeeeccCCCC
Confidence 3578999999999999999999999883 433 5999999999999999999887433110 222232 6789
Q ss_pred CChHHHHHHHHHhcCCCEEEEEeCCCC-CCcchHHHHHHHHHHhccccccCCCcccccccccccCCCeeeeecchhhhh-
Q 019818 142 HGKGEAIRKGMLHSRGELLLMLDADGA-TKVTDLEKLESQIHAVGRKEYNHGDSVTVDSTFRISDIPIAAFGSRAHLEE- 219 (335)
Q Consensus 142 ~Gk~~aln~g~~~a~~d~v~~~DaD~~-~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~g~~~~~~~- 219 (335)
.|++.|+|.|++.|+||+|+++|+|+. ++|++|.++++.+.++++. ++|.|.+.....
T Consensus 117 ~G~~~a~n~g~~~a~gd~i~~lD~D~~~~~p~~l~~l~~~l~~~~~~--------------------~~v~g~~~~~~~~ 176 (329)
T 3ckj_A 117 PGKGEALWRSLAASRGDIVVFVDSDLINPHPMFVPWLVGPLLTGDGV--------------------HLVKSFYRRPLNV 176 (329)
T ss_dssp CSHHHHHHHHHHHCCCSEEEECCTTEESCCTTHHHHHHHHHHSCSSC--------------------CEEEEEEECC---
T ss_pred CCHHHHHHHHHHhCCCCEEEEECCCCCCcChHHHHHHHHHHHhCCCc--------------------cEEEEEecccccC
Confidence 999999999999999999999999999 8999999999997665433 677776543110
Q ss_pred Hhhh---hhhhhHHHHHHHHHHHHHHHhC--CCCccCCCceeeeeHHHHHHhhhhhhhccccchHHHHHHhHH-cCCC-E
Q 019818 220 KALA---TRKWYRNFLMKGFHLVVILTAG--PGIRDTQCGFKMFTRAAARKLFTNIRLKRWCFDVELVYLCKR-FGIP-I 292 (335)
Q Consensus 220 ~~~~---~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~g~~~~~r~~l~~i~~~~~~~~~~~D~el~~r~~~-~G~~-i 292 (335)
+... ...................... ....+..||+++|||++++++. . ..+|.+|.|++.++.+ .|++ +
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~rr~~l~~i~--f-~~~~~~D~~l~~r~~~~~g~~~i 253 (329)
T 3ckj_A 177 GDAGGGAGATGGGRVTELVARPLLAALRPELGCILQPLGGEYAATRELLTSVP--F-APGYGVEIGLLVDTFDRLGLDAI 253 (329)
T ss_dssp ------------CHHHHHTHHHHHHHHCGGGGGCSCTTCSCEEEEHHHHTTSC--B-CCGGGHHHHHHHHHHHHHCGGGE
T ss_pred CcccccccccCCCceehhhHHHHHHHhhhhhccccCCCccceeeeHHHHHhCC--C-CCCCcccHHHHHHHHHhcCCccE
Confidence 0000 0000001111111111111111 2345677888899999999983 2 3567789999999987 7775 9
Q ss_pred EEeeeEEEecCCCccc
Q 019818 293 IEISVNWSEIPGSKVN 308 (335)
Q Consensus 293 ~~~p~~~~~~~~s~~~ 308 (335)
.++|+.|+..+.+..+
T Consensus 254 ~~v~~~~r~h~~s~~~ 269 (329)
T 3ckj_A 254 AQVNLGVREHRNRPLA 269 (329)
T ss_dssp EEEEEEECEECCCCGG
T ss_pred eeecceEEecCCCcHH
Confidence 9999988877666543
|
| >1qg8_A Protein (spore coat polysaccharide biosynthesis P SPSA); glycosyltransferase, transferase; 1.50A {Bacillus subtilis} SCOP: c.68.1.1 PDB: 1h7q_A* 1h7l_A 1qgq_A* 1qgs_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=4.7e-27 Score=207.60 Aligned_cols=190 Identities=15% Similarity=0.159 Sum_probs=142.3
Q ss_pred ceEEEEEeccCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCcchHHHHHHHHHHcCCCcEEEEEcC------
Q 019818 66 KYISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLG------ 139 (335)
Q Consensus 66 ~~vsViip~~ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~vi~~~------ 139 (335)
|+||||||+||+++.|.+||+|+++ |.++++|||||||||+|+|.++++++.+ .+ +++++..+
T Consensus 1 p~vSViIp~yn~~~~l~~~l~Sl~~--------q~~~~~eiivvDd~S~d~t~~~~~~~~~-~~--~i~~i~~~~~~~~~ 69 (255)
T 1qg8_A 1 PKVSVIMTSYNKSDYVAKSISSILS--------QTFSDFELFIMDDNSNEETLNVIRPFLN-DN--RVRFYQSDISGVKE 69 (255)
T ss_dssp CCEEEEEEESSCTTTHHHHHHHHHT--------CSCCCEEEEEEECSCCHHHHHHHGGGGG-ST--TEEEEECCCCSHHH
T ss_pred CeEEEEEEcCCCHHHHHHHHHHHHh--------ccCCceEEEEEECCCCchHHHHHHHHhh-cC--CEEEEecccccccc
Confidence 4699999999999999999999988 5777999999999999999999998865 55 89999998
Q ss_pred --CCCChHHHHHHHHHhcCCCEEEEEeCCCCCCcchHHHHHHHHHHhccccccCCCcccccccccccCCCeeeeecchhh
Q 019818 140 --RNHGKGEAIRKGMLHSRGELLLMLDADGATKVTDLEKLESQIHAVGRKEYNHGDSVTVDSTFRISDIPIAAFGSRAHL 217 (335)
Q Consensus 140 --~~~Gk~~aln~g~~~a~~d~v~~~DaD~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~g~~~~~ 217 (335)
+|.|++.|+|.|++.|+||||+++|+|+.++|++|.++++.++++++.+ +|.|.....
T Consensus 70 ~~~n~G~~~a~N~gi~~a~g~~i~~lD~Dd~~~~~~l~~~~~~~~~~~~~~--------------------~v~~~~~~~ 129 (255)
T 1qg8_A 70 RTEKTRYAALINQAIEMAEGEYITYATDDNIYMPDRLLKMVRELDTHPEKA--------------------VIYSASKTY 129 (255)
T ss_dssp HHSSCHHHHHHHHHHHHCCCSEEEEEETTEEECTTHHHHHHHHHHHCTTCC--------------------EEEEEEEEE
T ss_pred cccccCHHHHHHHHHHHcCCCEEEEeCCCCccChHHHHHHHHHHHhCCCce--------------------EEEeceEEE
Confidence 8999999999999999999999999999999999999999998865543 343332211
Q ss_pred --hhHhhhhhhhhHHHHHHHHHHHHHHHhCCCCccCCCceeeeeHHHHHHhh-hh------hhhccccchHHHHHHhHHc
Q 019818 218 --EEKALATRKWYRNFLMKGFHLVVILTAGPGIRDTQCGFKMFTRAAARKLF-TN------IRLKRWCFDVELVYLCKRF 288 (335)
Q Consensus 218 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~r~~l~~i~-~~------~~~~~~~~D~el~~r~~~~ 288 (335)
............... ...........+++.+++|++++++. +. .....+.+|.+++.|+...
T Consensus 130 ~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~rr~~~~~~g~~f~~~~~~~~~~~~~eD~~~~~r~~~~ 200 (255)
T 1qg8_A 130 HLNENRDIVKETVRPAA---------QVTWNAPCAIDHCSVMHRYSVLEKVKEKFGSYWDESPAFYRIGDARFFWRVNHF 200 (255)
T ss_dssp EEC---CEEEEEEECCC---------SCBSCCTTTSCGGGEEEETHHHHHHHHHHSSSSCCCGGGSTTHHHHHHHHHTTT
T ss_pred EeCCCCcchhhccCchH---------HHHHhhcCCCccceEEEEHHHHHhhcccccccccCCcccchHHHHHHHHHHHHh
Confidence 111000000000000 00001222344556799999999985 22 2334456799999999999
Q ss_pred CCCEEEee
Q 019818 289 GIPIIEIS 296 (335)
Q Consensus 289 G~~i~~~p 296 (335)
| ++.++|
T Consensus 201 g-~~~~~~ 207 (255)
T 1qg8_A 201 Y-PFYPLD 207 (255)
T ss_dssp C-CBEEEE
T ss_pred C-CEEEec
Confidence 8 788887
|
| >4hg6_A Cellulose synthase subunit A; membrane translocation, cellulose synthesis, UDP-GLC binding membrane, transferase; HET: BGC UDP LDA; 3.25A {Rhodobacter sphaeroides} | Back alignment and structure |
|---|
Probab=99.94 E-value=4.7e-26 Score=231.78 Aligned_cols=234 Identities=14% Similarity=0.040 Sum_probs=156.2
Q ss_pred CCCCceEEEEEeccCCCCCh-HHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCcchH---------------HHHHHHH
Q 019818 62 DPAEKYISLIIPAFNEEHRL-PGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTK---------------RVAFDFV 125 (335)
Q Consensus 62 ~~~~~~vsViip~~ne~~~l-~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~---------------~~~~~~~ 125 (335)
....|+|||+||+|||++.+ ++||+|+.++. ++..++||+||||||+|+|. +.++++.
T Consensus 136 ~~~~P~VSViIPtyNe~~~lL~~~L~Sl~~q~------yp~~~~eIiVVDDgStD~T~~~~d~~i~~~~~~~~~~l~~~~ 209 (802)
T 4hg6_A 136 PEELPTVDILVPSYNEPADMLSVTLAAAKNMI------YPARLRTVVLCDDGGTDQRCMSPDPELAQKAQERRRELQQLC 209 (802)
T ss_dssp TTTCCCEEEEEECTTCCHHHHHHHHHHHHTSS------CCTTCCEEEEESTTCHHHHHTCSSHHHHHHHHHHHHHHHHHH
T ss_pred ccCCCcEEEEEEECCCCHHHHHHHHHHHHhcc------CCCCcEEEEEEECCCCccccccCCHHHHHHHHhhhHHHHHHH
Confidence 34568899999999999766 88999988731 12334999999999999993 3345555
Q ss_pred HHcCCCcEEEEEcCCC-CChHHHHHHHHHhcCCCEEEEEeCCCCCCcchHHHHHHHHHHhccccccCCCccccccccccc
Q 019818 126 RKYTVDNVRIILLGRN-HGKGEAIRKGMLHSRGELLLMLDADGATKVTDLEKLESQIHAVGRKEYNHGDSVTVDSTFRIS 204 (335)
Q Consensus 126 ~~~~~~~i~vi~~~~~-~Gk~~aln~g~~~a~~d~v~~~DaD~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (335)
++. +++++..++| .||++|+|.|++.++||+|+++|+|+.++|+++.++++.+.++++.+
T Consensus 210 ~~~---~v~~i~~~~~~~GKa~alN~gl~~a~gd~Il~lDaD~~~~pd~L~~lv~~~~~dp~v~---------------- 270 (802)
T 4hg6_A 210 REL---GVVYSTRERNEHAKAGNMSAALERLKGELVVVFDADHVPSRDFLARTVGYFVEDPDLF---------------- 270 (802)
T ss_dssp HHH---TCEEEECSSCCSHHHHHHHHHHHHCCCSEEEECCTTEEECTTHHHHHHHHHHHSSSCC----------------
T ss_pred Hhc---CcEEEEecCCCCcchHHHHHHHHhcCCCEEEEECCCCCcChHHHHHHHHHHhcCCCeE----------------
Confidence 554 4777777766 78999999999999999999999999999999999999998766543
Q ss_pred CCCeeeeecchhhhhHhh-hhhhhhHH---HHHHHHHHHHHHHhCCCCccCCCceeeeeHHHHHHhhhhhhhccccchHH
Q 019818 205 DIPIAAFGSRAHLEEKAL-ATRKWYRN---FLMKGFHLVVILTAGPGIRDTQCGFKMFTRAAARKLFTNIRLKRWCFDVE 280 (335)
Q Consensus 205 ~~~~~v~g~~~~~~~~~~-~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~g~~~~~r~~l~~i~~~~~~~~~~~D~e 280 (335)
+|.|.....+.+.. .....+.. .....+................|++.++||++++++.+ .....++||.+
T Consensus 271 ----~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~Rr~al~~vGg-f~~~~~~ED~~ 345 (802)
T 4hg6_A 271 ----LVQTPHFFINPDPIQRNLALGDRCPPENEMFYGKIHRGLDRWGGAFFCGSAAVLRRRALDEAGG-FAGETITEDAE 345 (802)
T ss_dssp ----EEECCCCBSSCCHHHHHHTCCTTSCCTTHHHHHTHHHHHHHTTCCCCCSSSEEEEHHHHHHHTT-CCCSSSSHHHH
T ss_pred ----EEeccEEEeCCchHhhhhhHHhhhhHHHHHHHHHHHhhHhhcCCceecccchhhhHHHHHHcCC-cCCCCcchHHH
Confidence 44443221111000 00000000 00000111111111111122445567999999999943 33455778999
Q ss_pred HHHHhHHcCCCEEEee--eEEEecCCC-cccccchHHHHHHHHHHHhh
Q 019818 281 LVYLCKRFGIPIIEIS--VNWSEIPGS-KVNPLSIPNMLWELALMSVG 325 (335)
Q Consensus 281 l~~r~~~~G~~i~~~p--~~~~~~~~s-~~~~~~~~~~~~~~~~i~~~ 325 (335)
++.|+.+.|+++.++| ..+.+.+.+ +....+..|+..+..++.+.
T Consensus 346 l~~rl~~~G~ri~~~~~~~~~~~~p~t~~~~~~Qr~RW~~G~~q~l~~ 393 (802)
T 4hg6_A 346 TALEIHSRGWKSLYIDRAMIAGLQPETFASFIQQRGRWATGMMQMLLL 393 (802)
T ss_dssp HHHHHHTTTCCEEECCCCCEEECCCCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCeEEEecCCEEEecCCCCHHHHHHHHHHHHccHHHHHHH
Confidence 9999999999999998 444444544 22345666777777666654
|
| >1xhb_A Polypeptide N-acetylgalactosaminyltransferase 1; glycosyltransferase-A (GT-A); HET: NAG BMA; 2.50A {Mus musculus} SCOP: b.42.2.1 c.68.1.17 | Back alignment and structure |
|---|
Probab=99.94 E-value=5.7e-26 Score=218.69 Aligned_cols=215 Identities=20% Similarity=0.175 Sum_probs=148.1
Q ss_pred CCCceEEEEEeccCCC-CChHHHHHHHHHHHHHhhhcCCCCc--eEEEEEECCCCcc-hHHHHHHHHHHcCCCcEEEEEc
Q 019818 63 PAEKYISLIIPAFNEE-HRLPGALDETLNYLQQRAAKDKSFT--YEVLIIDDGSSDG-TKRVAFDFVRKYTVDNVRIILL 138 (335)
Q Consensus 63 ~~~~~vsViip~~ne~-~~l~~~l~sl~~~~~~~~~~~~~~~--~eiivvdd~s~d~-t~~~~~~~~~~~~~~~i~vi~~ 138 (335)
...|.||||||+|||+ +.|.++|+|+++ |.++. +|||||||+|+|+ |.++++++.+++|. ++++++.
T Consensus 26 ~~~p~vSVIIp~yN~~~~~l~~~l~Sl~~--------q~~~~~~~EIIvVDd~S~d~~t~~~l~~~~~~~~~-~v~vi~~ 96 (472)
T 1xhb_A 26 DNLPTTSVVIVFHNEAWSTLLRTVHSVIN--------RSPRHMIEEIVLVDDASERDFLKRPLESYVKKLKV-PVHVIRM 96 (472)
T ss_dssp SCCCCEEEEEEESSCCHHHHHHHHHHHHH--------SSCGGGEEEEEEEECSCCCGGGTHHHHHHHHSSSS-CEEEEEC
T ss_pred cCCCCeEEEEEeCCCCHHHHHHHHHHHHh--------cCcHhHceEEEEEECCCCcHHHHHHHHHHHHHCCC-cEEEEEC
Confidence 3568899999999999 999999999988 34444 7999999999995 99999999887763 5999999
Q ss_pred CCCCChHHHHHHHHHhcCCCEEEEEeCCCCCCcchHHHHHHHHHHhccccccCCCc-ccccccccccCCCeeeeecchhh
Q 019818 139 GRNHGKGEAIRKGMLHSRGELLLMLDADGATKVTDLEKLESQIHAVGRKEYNHGDS-VTVDSTFRISDIPIAAFGSRAHL 217 (335)
Q Consensus 139 ~~~~Gk~~aln~g~~~a~~d~v~~~DaD~~~~~~~l~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~v~g~~~~~ 217 (335)
++|.|++.|+|.|++.|+||+|+++|+|+.++|++|+.+++.+.+++..++ .|.. ...+..+.+........|...
T Consensus 97 ~~n~G~~~a~N~g~~~A~gd~i~flD~D~~~~p~~L~~ll~~~~~~~~~~v-~~~~~~~~~~~~~~~~~~~~~~~~~~-- 173 (472)
T 1xhb_A 97 EQRSGLIRARLKGAAVSRGQVITFLDAHCECTAGWLEPLLARIKHDRRTVV-CPIIDVISDDTFEYMAGSDMTYGGFN-- 173 (472)
T ss_dssp SSCCCHHHHHHHHHHHCCSSEEEEEESSEEECTTCHHHHHHHHHHCTTEEE-EEEEEEECSSSCCEECCCTTEEEEEC--
T ss_pred CCCCChHHHHHHHHHhccCCeEEEECCCeEeCccHHHHHHHHHHhCCCEEE-EeeeeeEcCCCceeccCCCcccceee--
Confidence 999999999999999999999999999999999999999999988654332 2211 111222211110001111000
Q ss_pred hhHhhhhhhhhHHHHHHHHHHHHHHH----hCCCCccCCCceeeeeHHHHHHhhhhhh-hccc-cchHHHHHHhHHcCCC
Q 019818 218 EEKALATRKWYRNFLMKGFHLVVILT----AGPGIRDTQCGFKMFTRAAARKLFTNIR-LKRW-CFDVELVYLCKRFGIP 291 (335)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~g~~~~~r~~l~~i~~~~~-~~~~-~~D~el~~r~~~~G~~ 291 (335)
+.................. .........|++.+++|++++++++... ...+ .+|.||++|+.++|++
T Consensus 174 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~irr~~~~~iGgfde~~~~~g~ED~dl~~R~~~~G~~ 246 (472)
T 1xhb_A 174 -------WKLNFRWYPVPQREMDRRKGDRTLPVRTPTMAGGLFSIDRDYFQEIGTYDAGMDIWGGENLEISFRIWQCGGT 246 (472)
T ss_dssp -------TTCCEEEEECCHHHHHHTTTCTTSCEECSBCCSSSEEEEHHHHHHTTSCCTTSCTTCCCCSHHHHHHHHTTCE
T ss_pred -------ccceeecccCCHHHHhcccCCCCCcccCccccceeEEEEHHHHHHcCCCCCcccccCchhHHHHHHHHhcCCe
Confidence 0000000000000000110 0122334567778999999999943322 2222 5799999999999999
Q ss_pred EEEee
Q 019818 292 IIEIS 296 (335)
Q Consensus 292 i~~~p 296 (335)
+.++|
T Consensus 247 i~~~p 251 (472)
T 1xhb_A 247 LEIVT 251 (472)
T ss_dssp EEEEE
T ss_pred EEEcc
Confidence 99999
|
| >2d7i_A Polypeptide N-acetylgalactosaminyltransferase 10; beta trefoil, rossmann fold; HET: NAG NGA UDP; 2.50A {Homo sapiens} PDB: 2d7r_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=3.5e-26 Score=224.84 Aligned_cols=215 Identities=19% Similarity=0.121 Sum_probs=146.6
Q ss_pred CCCceEEEEEeccCCC-CChHHHHHHHHHHHHHhhhcCCCCc--eEEEEEECCCCcch-HHHHHHHHHHcCCCcEEEEEc
Q 019818 63 PAEKYISLIIPAFNEE-HRLPGALDETLNYLQQRAAKDKSFT--YEVLIIDDGSSDGT-KRVAFDFVRKYTVDNVRIILL 138 (335)
Q Consensus 63 ~~~~~vsViip~~ne~-~~l~~~l~sl~~~~~~~~~~~~~~~--~eiivvdd~s~d~t-~~~~~~~~~~~~~~~i~vi~~ 138 (335)
...|+||||||+|||+ +.|.+||+|++++ .+.. +|||||||+|+|+| .++++++.++++ ++++++.
T Consensus 109 ~~~P~vSVIIp~yNe~~~~L~~~L~Sll~q--------t~~~~~~EIIVVDDgS~D~tl~~~l~~~~~~~~--~v~vi~~ 178 (570)
T 2d7i_A 109 ETLPNTSIIIPFHNEGWSSLLRTVHSVLNR--------SPPELVAEIVLVDDFSDREHLKKPLEDYMALFP--SVRILRT 178 (570)
T ss_dssp SSCCCEEEEEEESSCCHHHHHHHHHHHHHH--------SCGGGEEEEEEEECSCCCGGGTHHHHHHHTTST--TEEEEEC
T ss_pred CCCCCeEEEEEECCCCHHHHHHHHHHHHhc--------CCccCcEEEEEEECCCCcHHHHHHHHHHHHhCC--eEEEEEC
Confidence 3468899999999999 9999999999984 3434 59999999999999 999999988887 8999999
Q ss_pred CCCCChHHHHHHHHHhcCCCEEEEEeCCCCCCcchHHHHHHHHHHhccccccCCCccc-ccccccccCC-Ceeeeecchh
Q 019818 139 GRNHGKGEAIRKGMLHSRGELLLMLDADGATKVTDLEKLESQIHAVGRKEYNHGDSVT-VDSTFRISDI-PIAAFGSRAH 216 (335)
Q Consensus 139 ~~~~Gk~~aln~g~~~a~~d~v~~~DaD~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~v~g~~~~ 216 (335)
++|.|++.|+|.|++.|+||+|+++|+|+.++|++|+.+++.+.++++.. +.+.... ...++.+... .....+..
T Consensus 179 ~~n~G~~~A~N~G~~~A~gd~i~fLD~D~~~~p~~L~~ll~~l~~~~~~v-v~~~i~~~~~~~~~~~~~~~~~~~~~~-- 255 (570)
T 2d7i_A 179 KKREGLIRTRMLGASVATGDVITFLDSHCEANVNWLPPLLDRIARNRKTI-VCPMIDVIDHDDFRYETQAGDAMRGAF-- 255 (570)
T ss_dssp SSCCCHHHHHHHHHHHCCSSEEEECCSSEEECTTCSHHHHHHHHHCTTEE-EEEEEEEECTTTCCEECCTTSSCEEEE--
T ss_pred CCCCCHHHHHHHHHHhcCCCEEEEEcCCccccccHHHHHHHHHHhCCCEE-EeeeeeccCCCchhhccccCCcccccc--
Confidence 99999999999999999999999999999999999999999998865332 1111100 0111111000 00000000
Q ss_pred hhhHhhhhhhhhHHHHHHHHH-HHHHHHhCCCCccCCCceeeeeHHHHHHhhhhhh-hccc-cchHHHHHHhHHcCCCEE
Q 019818 217 LEEKALATRKWYRNFLMKGFH-LVVILTAGPGIRDTQCGFKMFTRAAARKLFTNIR-LKRW-CFDVELVYLCKRFGIPII 293 (335)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~r~~l~~i~~~~~-~~~~-~~D~el~~r~~~~G~~i~ 293 (335)
.+............ ...............|++.+++|++++++++... ...+ .+|.||++|+.++|+++.
T Consensus 256 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~irr~~~~~iGgfDe~~~~~g~ED~dl~~Rl~~~G~~i~ 328 (570)
T 2d7i_A 256 -------DWEMYYKRIPIPPELQKADPSDPFESPVMAGGLFAVDRKWFWELGGYDPGLEIWGGEQYEISFKVWMCGGRME 328 (570)
T ss_dssp -------CTTCCEEEECCCTTTCCSSTTSCEECSSCCSSSEEEEHHHHHHTTSSCTTCCSSSSHHHHHHHHHHHTTCEEE
T ss_pred -------cccccccccccchhhhccCCCcceecccccceEEEEEHHHHHhcCCCCCcccccCcchHHHHHHHHhCCCeEE
Confidence 00000000000000 0000000112233557788999999999943322 2222 679999999999999999
Q ss_pred Eeee
Q 019818 294 EISV 297 (335)
Q Consensus 294 ~~p~ 297 (335)
++|.
T Consensus 329 ~~p~ 332 (570)
T 2d7i_A 329 DIPC 332 (570)
T ss_dssp EEEE
T ss_pred EccC
Confidence 9993
|
| >2ffu_A Ppgalnact-2, polypeptide N-acetylgalactosaminyltransferase 2, protein-UDP; ppgalnact, mucin, glycosyltransferase; HET: UDP; 1.64A {Homo sapiens} PDB: 2ffv_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=5e-25 Score=213.66 Aligned_cols=211 Identities=15% Similarity=0.085 Sum_probs=142.3
Q ss_pred CCCceEEEEEeccCCCC-ChHHHHHHHHHHHHHhhhcCCCCc--eEEEEEECCCCcchHHHHHHHHHHcCCCcEEEEEcC
Q 019818 63 PAEKYISLIIPAFNEEH-RLPGALDETLNYLQQRAAKDKSFT--YEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLG 139 (335)
Q Consensus 63 ~~~~~vsViip~~ne~~-~l~~~l~sl~~~~~~~~~~~~~~~--~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~vi~~~ 139 (335)
...|.||||||+|||+. .|.++|+|++++ .+.+ +|||||||||+|+|.+. ..++++ ++++++.+
T Consensus 63 ~~~p~vSVIIp~yN~~~~~L~~~l~Sl~~q--------~~~~~~~EIIvVDDgS~D~t~~~---~~~~~~--~v~vi~~~ 129 (501)
T 2ffu_A 63 VDLPATSVVITFHNEARSALLRTVVSVLKK--------SPPHLIKEIILVDDYSNDPEDGA---LLGKIE--KVRVLRND 129 (501)
T ss_dssp SSCCCEEEEEEESSCCHHHHHHHHHHHHHH--------SCGGGEEEEEEEECSCSCTHHHH---GGGGBT--TEEEEECS
T ss_pred cCCCCEEEEEEeCcCcHHHHHHHHHHHHhh--------CchhhceeEEEEECCCCchHHHH---HHhcCC--CEEEEECC
Confidence 45688999999999997 899999999985 3333 69999999999999643 335667 89999999
Q ss_pred CCCChHHHHHHHHHhcCCCEEEEEeCCCCCCcchHHHHHHHHHHhccccccCCCcc-cccccccccCCCeeeeecchhhh
Q 019818 140 RNHGKGEAIRKGMLHSRGELLLMLDADGATKVTDLEKLESQIHAVGRKEYNHGDSV-TVDSTFRISDIPIAAFGSRAHLE 218 (335)
Q Consensus 140 ~~~Gk~~aln~g~~~a~~d~v~~~DaD~~~~~~~l~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~v~g~~~~~~ 218 (335)
+|.|++.|+|.|++.|+||+|+++|+|++++|++|+.+++.+.+++.. ++.+... ..+.++.+........|...
T Consensus 130 ~n~G~~~A~N~G~~~A~gd~i~flD~D~~~~p~~L~~ll~~~~~~~~~-vv~~~~~~~~~~~~~~~~~~~~~~~~~~--- 205 (501)
T 2ffu_A 130 RREGLMRSRVRGADAAQAKVLTFLDSHCECNEHWLEPLLERVAEDRTR-VVSPIIDVINMDNFQYVGASADLKGGFD--- 205 (501)
T ss_dssp SCCHHHHHHHHHHHHCCSSEEEECCSSEEECTTCHHHHHHHHHHCTTE-EEEEEEEEECTTTCCEECBCSSEEEEEC---
T ss_pred CCcCHHHHHHHHHHhcCCCEEEEECCCcccCccHHHHHHHHHHhCCCe-EEEeeeccCcCCCceeecCCcccceEee---
Confidence 999999999999999999999999999999999999999999876542 2222111 11111111110000011000
Q ss_pred hHhhhhhhhhHHHHHHHHHHHHHHH----hCCCCccCCCceeeeeHHHHHHhhhhhh-hccc-cchHHHHHHhHHcCCCE
Q 019818 219 EKALATRKWYRNFLMKGFHLVVILT----AGPGIRDTQCGFKMFTRAAARKLFTNIR-LKRW-CFDVELVYLCKRFGIPI 292 (335)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~g~~~~~r~~l~~i~~~~~-~~~~-~~D~el~~r~~~~G~~i 292 (335)
+.....+............ .........|++.+++|++++++.+... ...+ .+|.||++|+.+.|+++
T Consensus 206 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~irr~~~~~iGgfde~~~~~g~ED~dl~~Rl~~~G~~i 279 (501)
T 2ffu_A 206 ------WNLVFKWDYMTPEQRRSRQGNPVAPIKTPMIAGGLFVMDKFYFEELGKYDMMMDVWGGENLEISFRVWQCGGSL 279 (501)
T ss_dssp ------TTCCEEEEECCHHHHHHTSSCTTSCEECSSCCSSSEEEEHHHHHHTTCCCTTCCSSSSHHHHHHHHHHHTTCEE
T ss_pred ------ecCCCccccCCHHHHhhccCCCCCcccCccccceEEEEEHHHHHHhCCCCccccccCcchHHHHHHHHhcCCeE
Confidence 0000000000000000110 1112334567788999999999943322 2223 68999999999999999
Q ss_pred EEee
Q 019818 293 IEIS 296 (335)
Q Consensus 293 ~~~p 296 (335)
.++|
T Consensus 280 ~~~p 283 (501)
T 2ffu_A 280 EIIP 283 (501)
T ss_dssp EEEE
T ss_pred EEcc
Confidence 9999
|
| >2bo4_A Mannosylglycerate synthase; catalysis, glycosyltransferase, mannose, transferase, stereoselectivity; HET: FLC; 1.95A {Rhodothermus marinus} SCOP: c.68.1.18 PDB: 2bo6_A 2bo7_A* 2bo8_A* 2xw2_A 2y4j_A 2xw3_A* 2xw4_A* 2xw5_A* 2y4k_A* 2y4l_A* 2y4m_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=3.4e-24 Score=200.07 Aligned_cols=195 Identities=17% Similarity=0.136 Sum_probs=136.1
Q ss_pred EEEEeccCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCcchHHHHHHHHHHcC---CCcEEEEEcC--C--C
Q 019818 69 SLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYT---VDNVRIILLG--R--N 141 (335)
Q Consensus 69 sViip~~ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~---~~~i~vi~~~--~--~ 141 (335)
|||||.+||+ +|+.+++++.... ..+.+|||||||||+|+|.+++++++++.+ +.++..+... . |
T Consensus 2 slVIiP~~eE-~I~~vl~~l~~~~-------~~~~~EIIVVDDGStD~T~eia~~la~~~~~~~g~~vi~~~~~r~~~~n 73 (397)
T 2bo4_A 2 SLVVFPFKHE-HPEVLLHNVRVAA-------AHPRVHEVLCIGYERDQTYEAVERAAPEISRATGTPVSVRLQERLGTLR 73 (397)
T ss_dssp CEEEEECCSS-CHHHHHHHHHHHH-------HSTTCCEEEEEESSCCHHHHHHHHHHHHHHHHHSCCEEEEECCCCSSSS
T ss_pred cEEEEeCCcc-CHHHHHHHHHHhc-------cCCCeEEEEEECcCCccHHHHHHHhhhhcccccCCeEEEEecccCCCCC
Confidence 3444445553 6888888886432 133689999999999999999997765543 1133333222 3 8
Q ss_pred CChHHHHHHHH----HhcCCCEEEEEeCCCC-CCcchHHHHHHHHHHhccccccCCCcccccccccccCCCeeeeecchh
Q 019818 142 HGKGEAIRKGM----LHSRGELLLMLDADGA-TKVTDLEKLESQIHAVGRKEYNHGDSVTVDSTFRISDIPIAAFGSRAH 216 (335)
Q Consensus 142 ~Gk~~aln~g~----~~a~~d~v~~~DaD~~-~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~g~~~~ 216 (335)
.||+.|++.|+ +.++||+|+++|||.+ .+|+++.+|++.+.++ + ++|+|.+..
T Consensus 74 ~GkG~Al~~G~~~Al~~a~gd~vv~mDADlq~~~P~~i~~Ll~~l~~g----~------------------D~V~g~~~r 131 (397)
T 2bo4_A 74 PGKGDGMNTALRYFLEETQWERIHFYDADITSFGPDWITKAEEAADFG----Y------------------GLVRHYFPR 131 (397)
T ss_dssp SSHHHHHHHHHHHHHHHCCCSEEEECCTTCSSCCHHHHHHHHHHHHTT----C------------------SEEEEECCC
T ss_pred CCHHHHHHHHHHHHHHhCCCCEEEEEcCCCCCCCHHHHHHHHHHHHcC----C------------------CEEEEEecc
Confidence 99999999999 8899999999999996 8999999999988542 2 888886432
Q ss_pred hhhHhhhhhhhhHHHH-HHHHHHHHHHHhCCCCccCCCceeeeeHHHHHHhhhhh---hhccccchHHHHHHhHHcCCCE
Q 019818 217 LEEKALATRKWYRNFL-MKGFHLVVILTAGPGIRDTQCGFKMFTRAAARKLFTNI---RLKRWCFDVELVYLCKRFGIPI 292 (335)
Q Consensus 217 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~~~~~r~~l~~i~~~~---~~~~~~~D~el~~r~~~~G~~i 292 (335)
.... +...+.. ...+...........+.++.+|+++|+|++++.+.... ...+|++|.++..++.+.|++|
T Consensus 132 ~~~~-----~~~~~~~~~~ll~~~~~~~~~~~i~dp~sG~~a~~R~vl~~l~~~~~~~~~~~fg~eiel~~~a~~~G~rI 206 (397)
T 2bo4_A 132 ASTD-----AMITWMITRTGFALLWPHTELSWIEQPLGGELLMRREVAAMLYEDERVRRRSDWGIDTLYTFVTVQQGVSI 206 (397)
T ss_dssp CTTS-----CHHHHHTHHHHHHHHCTTSSGGGCSCTTCCCEEEEHHHHHHHHHCHHHHTCCSTTHHHHHHHHHHHTTCCE
T ss_pred ccCC-----cHHHHHHHHHHHHHHHHHhhccccccCCcccEEEeHHHHHHHhhhcccCcCCCcchHHHHHHHHHHcCCEE
Confidence 1111 1111111 11111111111112567788999999999999884321 4567889999999999999999
Q ss_pred EEeeeE
Q 019818 293 IEISVN 298 (335)
Q Consensus 293 ~~~p~~ 298 (335)
.++|+.
T Consensus 207 ~EVpig 212 (397)
T 2bo4_A 207 YECYIP 212 (397)
T ss_dssp EEEECT
T ss_pred EEEECc
Confidence 999974
|
| >2z86_A Chondroitin synthase; GT-A, glycosyltransferase A, fold; HET: UGA UDP; 2.40A {Escherichia coli} PDB: 2z87_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=5.7e-24 Score=211.58 Aligned_cols=192 Identities=20% Similarity=0.214 Sum_probs=144.0
Q ss_pred CCceEEEEEeccCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCcchHHHHHHHHHHcCCCcEEEEEcCCCCC
Q 019818 64 AEKYISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNHG 143 (335)
Q Consensus 64 ~~~~vsViip~~ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~vi~~~~~~G 143 (335)
..|.||||||+||+++.|.+||+|+++ |.+.++|||||||||+|+|.++++++.++++ +++++. .+|.|
T Consensus 373 ~~~~vsiii~~yn~~~~l~~~l~s~~~--------q~~~~~eiivvdd~S~d~t~~~~~~~~~~~~--~i~~~~-~~n~G 441 (625)
T 2z86_A 373 RVPLVSIYIPAYNCSKYIVRCVESALN--------QTITDLEVCICDDGSTDDTLRILQEHYANHP--RVRFIS-QKNKG 441 (625)
T ss_dssp SSCSEEEEEEESSCTTTHHHHHHHHHS--------SSCCSEEEEEEEESCSSSHHHHHHHHHTTCT--TEEEEE-ECCCC
T ss_pred cCCeEEEEEeCCCCHHHHHHHHHHHHh--------CcCCCeEEEEEECcCChhHHHHHHHHHhhCC--cEEEEe-CCCCC
Confidence 467899999999999999999999987 5778999999999999999999999888777 899887 67999
Q ss_pred hHHHHHHHHHhcCCCEEEEEeCCCCCCcchHHHHHHHHHHhccccccCCCcccccccccccCCCeeeeecchhhhhHhh-
Q 019818 144 KGEAIRKGMLHSRGELLLMLDADGATKVTDLEKLESQIHAVGRKEYNHGDSVTVDSTFRISDIPIAAFGSRAHLEEKAL- 222 (335)
Q Consensus 144 k~~aln~g~~~a~~d~v~~~DaD~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~g~~~~~~~~~~- 222 (335)
++.|+|.|++.|+||||+++|+|+.++|++|..+++.+.++++.++ |.+........+.
T Consensus 442 ~~~a~n~g~~~a~g~~i~~ld~D~~~~~~~l~~~~~~~~~~~~~~~--------------------v~~~~~~~~~~~~~ 501 (625)
T 2z86_A 442 IGSASNTAVRLCRGFYIGQLDSDDFLEPDAVELCLDEFRKDLSLAC--------------------VYTTNRNIDREGNL 501 (625)
T ss_dssp HHHHHHHHHHHCCSSEEEECCTTCEECTTHHHHHHHHHHHCTTCSE--------------------EEEEEEEECTTSCE
T ss_pred HHHHHHHHHHhcCCCEEEEECCCcccChhHHHHHHHHHHhCCCeeE--------------------EEeeeEEECCCCCE
Confidence 9999999999999999999999999999999999999987665433 3332111100000
Q ss_pred hhhhhhHHHHHHHHHHHHHHHhCCCCccCCCceeeeeHHHHHHhhhhhhhccccchHHHHHHhHHcCCCEEEee
Q 019818 223 ATRKWYRNFLMKGFHLVVILTAGPGIRDTQCGFKMFTRAAARKLFTNIRLKRWCFDVELVYLCKRFGIPIIEIS 296 (335)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~r~~l~~i~~~~~~~~~~~D~el~~r~~~~G~~i~~~p 296 (335)
....+...... . ..+.. ....+++.+++|++++++++......+.+|.||+.|+...| ++.++|
T Consensus 502 ~~~~~~~~~~~--~----~~~~~---~~~~~~~~~~~r~~~~~~ggfd~~~~~~eD~dl~~r~~~~g-~~~~~~ 565 (625)
T 2z86_A 502 ISNGYNWPIYS--R----EKLTS---AMICHHFRMFTARAWNLTEGFNESISNAVDYDMYLKLSEVG-PFKHIN 565 (625)
T ss_dssp EEECCCCSSCC--H----HHHTT---SCCCCSCEEEEHHHHTTTTCCCSSCSSCHHHHHHHHHTTTS-CEEEEE
T ss_pred eccCcccccCC--H----HHHhh---cccCCceEEEEHHHHHHhCCCCCccCChHHHHHHHHHHHhC-CEEEeC
Confidence 00000000000 0 00111 12344567899999999854333334568999999999999 999998
|
| >4fix_A UDP-galactofuranosyl transferase GLFT2; CAZY GT-2 family, glycosyltrans carbohydrate binding, membrane; 2.45A {Mycobacterium tuberculosis} PDB: 4fiy_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=3e-24 Score=213.27 Aligned_cols=257 Identities=14% Similarity=0.047 Sum_probs=157.9
Q ss_pred CCCceEEEEEeccCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCcc--hHHHHHHHHHHcCCCcEEEEEcCC
Q 019818 63 PAEKYISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDG--TKRVAFDFVRKYTVDNVRIILLGR 140 (335)
Q Consensus 63 ~~~~~vsViip~~ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~--t~~~~~~~~~~~~~~~i~vi~~~~ 140 (335)
+..|+||||||+||+++.|.+||+|+.++.+. ....+|||||||||+|+ +....+......+ +++++..+
T Consensus 177 ~~~pkVSVVIptYN~~~~L~~~L~SL~~qt~~-----~~~~~EIIVVDNgStD~s~~~~~~e~~~~~~~--~I~vI~~~- 248 (657)
T 4fix_A 177 PGTANIAVGIPTFNRPADCVNALRELTADPLV-----DQVIGAVIVPDQGERKVRDHPDFPAAAARLGS--RLSIHDQP- 248 (657)
T ss_dssp CSCCCEEEECCBSSCHHHHHHHHHHHTTSHHH-----HTTEEEEEEEECSSSCGGGSTTHHHHHHHHGG--GEEEEECC-
T ss_pred CCCCeEEEEEEecCCHHHHHHHHHHHHcCccc-----cCCCCEEEEEECcCCCccchHHHHHHHHhcCC--CEEEEECC-
Confidence 34578999999999999999999999885431 12467999999999984 3333443434445 89999988
Q ss_pred CCChHHHHHHHHHhc----CCCEEEEEeCCCCCCcchHHHHHHHHHHhccccccCCCcccccccccccCCCeeeeecchh
Q 019818 141 NHGKGEAIRKGMLHS----RGELLLMLDADGATKVTDLEKLESQIHAVGRKEYNHGDSVTVDSTFRISDIPIAAFGSRAH 216 (335)
Q Consensus 141 ~~Gk~~aln~g~~~a----~~d~v~~~DaD~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~g~~~~ 216 (335)
|.|.++|.|.|++.| .+|||+++|+|+.++|++|.++++.++.+++.+++.|.....+..-.....-..+-.....
T Consensus 249 N~G~a~a~N~Gl~~A~g~~~~dyIlfLD~D~~~~pd~L~~ll~~l~~~~~~~~vg~~il~~~~~~~~~~~g~~~~~~~~~ 328 (657)
T 4fix_A 249 NLGGSGGYSRVMYEALKNTDCQQILFMDDDIRLEPDSILRVLAMHRFAKAPMLVGGQMLNLQEPSHLHIMGEVVDRSIFM 328 (657)
T ss_dssp CCHHHHHHHHHHHHHHHHCCCSEEEEECSSEEECTHHHHHHHHHHHHBSSCCEEEEEEEETTSTTEECCSCEEEETTTTE
T ss_pred CCCHHHHHHHHHHHHHhcCCCCEEEEECCCCccChhHHHHHHHHHHhCCCcEEEEeEEecCCCCceeeecccEecccccc
Confidence 999999999999998 4589999999999999999999999998766554444333222211000000000000000
Q ss_pred -hh-hHhhhhhhhhHHHHHHHHHHHHHHHhCCCCccCCCceeeeeHHHHHHhhhhhhhccccchHHHHHHhHHcCCCEEE
Q 019818 217 -LE-EKALATRKWYRNFLMKGFHLVVILTAGPGIRDTQCGFKMFTRAAARKLFTNIRLKRWCFDVELVYLCKRFGIPIIE 294 (335)
Q Consensus 217 -~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~r~~l~~i~~~~~~~~~~~D~el~~r~~~~G~~i~~ 294 (335)
.. ........+...-................+....+++.+++|++++++++......+.+|.|+++|+.++|+++.+
T Consensus 329 ~~~~~~~~~~~~f~~~~l~~~~~~~~~~~~~~~v~~~~g~~~lirr~v~~~vGgfd~~F~~~ED~Dl~lR~~~~G~ki~~ 408 (657)
T 4fix_A 329 WTAAPHAEYDHDFAEYPLNDNNSRSKLLHRRIDVDYNGWWTCMIPRQVAEELGQPLPLFIKWDDADYGLRAAEHGYPTVT 408 (657)
T ss_dssp EEECTTCCSCEETTTSCSSCSSHHHHGGGBCCCCSBCCTTEEEEEHHHHHHHCSCCSCSSSSHHHHHHHHHHHTTCCEEE
T ss_pred ccccccccccccccccccccccccccccccceeccccchhHhHhhHHHHHHhCCChhHhccCcHHHHHHHHHHcCCeEEE
Confidence 00 0000000000000000000000111123344456667899999999994333444456899999999999999999
Q ss_pred ee--eEEEecCCCcc--cccchHHHHHHHHHHHhhhh
Q 019818 295 IS--VNWSEIPGSKV--NPLSIPNMLWELALMSVGYR 327 (335)
Q Consensus 295 ~p--~~~~~~~~s~~--~~~~~~~~~~~~~~i~~~y~ 327 (335)
+| ..++....++. +.++......+.+.+..++.
T Consensus 409 ~p~a~V~H~~~~~~~~~s~~r~Yy~~RN~l~~~~k~~ 445 (657)
T 4fix_A 409 LPGAAIWHMAWSDKDDAIDWQAYFHLRNRLVVAAMHW 445 (657)
T ss_dssp EEEEEEEECCSSSSCCTTSTHHHHHHHHHHHHHHHHC
T ss_pred ECCEEEEEcCcCccccccHHHHHHHHHHHHHHHHHhC
Confidence 98 34443322222 22455556666666555554
|
| >2z86_A Chondroitin synthase; GT-A, glycosyltransferase A, fold; HET: UGA UDP; 2.40A {Escherichia coli} PDB: 2z87_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=1.3e-22 Score=201.76 Aligned_cols=202 Identities=16% Similarity=0.149 Sum_probs=139.8
Q ss_pred CCceEEEEEeccCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCcchHHHHHHHHHHcCCCcEEEEEcCC-CC
Q 019818 64 AEKYISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGR-NH 142 (335)
Q Consensus 64 ~~~~vsViip~~ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~vi~~~~-~~ 142 (335)
..|.||||||+||+++.|.++|+++.++ ..+.++|||||||||+|+|.++++++... + +++++..+. +.
T Consensus 91 ~~p~vsviIp~~n~~~~l~~~l~sl~~q-------~~~~~~eiivvDd~s~d~t~~~~~~~~~~-~--~i~~i~~~~~~~ 160 (625)
T 2z86_A 91 IIDGLSIVIPTYNRAKILAITLACLCNQ-------KTIYDYEVIVADDGSKENIEEIVREFESL-L--NIKYVRQKDYGY 160 (625)
T ss_dssp CCCCEEEEEEESSCHHHHHHHHHHHHTC-------CCSSCEEEEEEEESCSSCHHHHHHTTTTT-S--CEEEEEECCCSC
T ss_pred cCCcEEEEEecCCcHHHHHHHHHHHHhh-------ccCCCeEEEEEeCCCchhHHHHHHHhhhc-C--CeEEEEeCCCCc
Confidence 3478999999999999999999998872 23348999999999999999999887543 2 688888764 34
Q ss_pred ChHHHHHHHHHhcCCCEEEEEeCCCCCCcchHHHHHHHHHHhccccccCCCcccccccccccCCCeeeeecchhhhhHhh
Q 019818 143 GKGEAIRKGMLHSRGELLLMLDADGATKVTDLEKLESQIHAVGRKEYNHGDSVTVDSTFRISDIPIAAFGSRAHLEEKAL 222 (335)
Q Consensus 143 Gk~~aln~g~~~a~~d~v~~~DaD~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~g~~~~~~~~~~ 222 (335)
|+++|+|.|++.++||+|+++|+|+.++|++|..+++.+.+++..+ ++|.+........
T Consensus 161 g~~~a~N~g~~~a~g~~v~~lD~D~~~~~~~l~~~~~~~~~~~~~~---------------------~~g~~~~~~~~~~ 219 (625)
T 2z86_A 161 QLCAVRNLGLRAAKYNYVAILDCDMAPNPLWVQSYMELLAVDDNVA---------------------LIGPRKYIDTSKH 219 (625)
T ss_dssp CHHHHHHHHHHHCCSSEEEEECTTEEECTTHHHHHHHHHHHCTTEE---------------------EECCEEEECCTTC
T ss_pred chhHHHHHHHHhCCcCEEEEECCCCCCCHHHHHHHHHHHhcCCceE---------------------EEEeeeeccCccc
Confidence 6999999999999999999999999999999999999998765433 3333221110000
Q ss_pred ------hhhhhhHH-------------HH-----HHHHHHHHH--HH--hCCCCccCCCceeeeeHHHHHHhhhhhh-hc
Q 019818 223 ------ATRKWYRN-------------FL-----MKGFHLVVI--LT--AGPGIRDTQCGFKMFTRAAARKLFTNIR-LK 273 (335)
Q Consensus 223 ------~~~~~~~~-------------~~-----~~~~~~~~~--~~--~~~~~~~~~~g~~~~~r~~l~~i~~~~~-~~ 273 (335)
........ .. ......... .. .........|++.+++|++++++++... ..
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~rr~~l~~iGgfde~~~ 299 (625)
T 2z86_A 220 TYLDFLSQKSLINEIPEIITNNQVAGKVEQNKSVDWRIEHFKNTDNLRLCNTPFRFFSGGNVAFAKKWLFRAGWFDEEFT 299 (625)
T ss_dssp CHHHHHHSTTGGGTSCC---------------CCCTHHHHHHHTTTTTTCSCGGGGCCTTEEEEETHHHHHHCCCCTTCS
T ss_pred chhhcccchHHhhhcchhccCCchhhhhccCCccccchhhhcccccccccCCceeEEeeceeeeEHHHHHHhCCCccccc
Confidence 00000000 00 000000000 00 0111223566678999999999943222 22
Q ss_pred cc-cchHHHHHHhHHcCCCEEEee
Q 019818 274 RW-CFDVELVYLCKRFGIPIIEIS 296 (335)
Q Consensus 274 ~~-~~D~el~~r~~~~G~~i~~~p 296 (335)
.+ .+|.|++.|+.++|+++.++|
T Consensus 300 ~~g~ED~dl~~Rl~~~G~~i~~~p 323 (625)
T 2z86_A 300 HWGGEDNEFGYRLYREGCYFRSVE 323 (625)
T ss_dssp SCCCHHHHHHHHHHHTTCEEEECG
T ss_pred cCCcchhhhhhhHHhCCceEEEcc
Confidence 22 589999999999999999998
|
| >3l7i_A Teichoic acid biosynthesis protein F; GT-B fold, monotopic membrane protein, structural protein; 2.70A {Staphylococcus epidermidis} PDB: 3l7j_A 3l7k_A* 3l7l_A* 3l7m_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=1.2e-24 Score=220.04 Aligned_cols=196 Identities=16% Similarity=0.232 Sum_probs=0.0
Q ss_pred ceEEEEEeccCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCcchHHHHHHHHHHcCCCcEEEEEcCCCCChH
Q 019818 66 KYISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNHGKG 145 (335)
Q Consensus 66 ~~vsViip~~ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~vi~~~~~~Gk~ 145 (335)
|+||||||+||+++.|.+||+|+++| ++.++|||||||||+|+|.++++++.++++. +++++..++|.|.+
T Consensus 2 p~vSVIIp~yN~~~~L~~~L~Sll~Q--------t~~~~EIIVVDDgStD~t~~il~~~~~~~~~-~i~~i~~~~n~G~~ 72 (729)
T 3l7i_A 2 NKLTIIVTYYNAEEYITGCLESIKQQ--------RTQDFNLIIVNDGSTDQSKKLMDEAIKDYDK-NIRFIDLDENSGHA 72 (729)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ceEEEEEEcCCCHHHHHHHHHHHHhC--------CCCCeEEEEEECCCCCcHHHHHHHHHHhCCC-CEEEEECCCCCCHH
Confidence 67999999999999999999999984 5668999999999999999999999887542 79999999999999
Q ss_pred HHHHHHHHhcCCCEEEEEeCCCCCCcchHHHHHHHHHHhccccccCCCcccccccccccCCCeeeeecchhhhhHhhhhh
Q 019818 146 EAIRKGMLHSRGELLLMLDADGATKVTDLEKLESQIHAVGRKEYNHGDSVTVDSTFRISDIPIAAFGSRAHLEEKALATR 225 (335)
Q Consensus 146 ~aln~g~~~a~~d~v~~~DaD~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~g~~~~~~~~~~~~~ 225 (335)
+|+|.|++.|+||+|+++|+|+.++|++|+.+++.+. +. ++++|.............
T Consensus 73 ~arN~gi~~A~gdyI~flD~Dd~~~p~~l~~l~~~l~-~~----------------------d~v~~~~~~~~~~~~~~~ 129 (729)
T 3l7i_A 73 HARNIALEEVETPYFMFLDADDELASYAITFYLEKFN-NT----------------------DGLIAPIHSFTTQRPQFV 129 (729)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHhccCCEEEEECCCCCCChhHHHHHHHHhc-CC----------------------CEEEEeeEEeecCCCccc
Confidence 9999999999999999999999999999999999997 22 344443321111100000
Q ss_pred hhhHHHHHHHHHHHHHHHhCCCCccCCCceeeeeHHHHHHhhhhh-hhccccchHHHHHHhHHcCCCEEEe-e
Q 019818 226 KWYRNFLMKGFHLVVILTAGPGIRDTQCGFKMFTRAAARKLFTNI-RLKRWCFDVELVYLCKRFGIPIIEI-S 296 (335)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~r~~l~~i~~~~-~~~~~~~D~el~~r~~~~G~~i~~~-p 296 (335)
. ......... ..............++..+|||++++++.... ....+.+|.+++.|+...|.++.++ +
T Consensus 130 ~-~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~rr~~l~~~gl~fde~~~~~ED~d~~~rl~~~g~~i~~~~~ 199 (729)
T 3l7i_A 130 D-LDRVRVEYF--NAKENINSFLRKQSACNIIFRTAIVRAHHIRFNENLNTYVDWSFVLEYMKYVNKFVRIFN 199 (729)
T ss_dssp -------------------------------------------------------------------------
T ss_pred c-ccceeeeee--cchhhHHHHhhccchhheeeeHHHHHHcCCCcCCCCCcccCHHHHHHHHHhcCCEEEecC
Confidence 0 000000000 00000001111234445799999999884222 2224678999999999999999999 5
|
| >2zu9_A Mannosyl-3-phosphoglycerate synthase; GT-A fold, glycosyltransferase, GT55, GDP, cytoplasm, magnesium, transferase; HET: GDP; 2.00A {Pyrococcus horikoshii} PDB: 2zu7_A* 2zu8_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=3.2e-17 Score=150.83 Aligned_cols=224 Identities=17% Similarity=0.158 Sum_probs=143.7
Q ss_pred eEEEEEeccCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCcch------HHHHHHHHHHcCCCcEEEEEcCC
Q 019818 67 YISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGT------KRVAFDFVRKYTVDNVRIILLGR 140 (335)
Q Consensus 67 ~vsViip~~ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t------~~~~~~~~~~~~~~~i~vi~~~~ 140 (335)
++|||||+|||+. .++..++.. -...+|||+|||||+|+| .+.++++++..+. .+.+++...
T Consensus 52 ~iSVVIP~yNEE~---~lI~~vL~~--------i~~~~eIIvVDDgSrD~tD~~~~~~~~l~~~~~~~~~-~~~Vl~~~~ 119 (394)
T 2zu9_A 52 KMAVIVPMKNEKL---HLVDGVLKA--------IPHKCPIIIVSNSKREGPNRYKLEVDLIRHFYNLTHS-KIIMIHQKD 119 (394)
T ss_dssp TEEEEEEESSCCH---HHHHHHHHH--------SCTTSCEEEEECCCCSSSCHHHHHHHHHHHHHHHHCC-CEEEEETTC
T ss_pred CEEEEEecCcccH---HHHHHHHHc--------CCCCcEEEEEECcCcccccchhhHHHHHHHHhhcccc-ceEEEecCC
Confidence 5999999999994 345666553 233689999999998877 7788887766442 566776653
Q ss_pred ----------------------CCChHHHHHHHHHhc---CCCEEEEEeCCCCCCcchHHHHHHHHHHhc---cccccCC
Q 019818 141 ----------------------NHGKGEAIRKGMLHS---RGELLLMLDADGATKVTDLEKLESQIHAVG---RKEYNHG 192 (335)
Q Consensus 141 ----------------------~~Gk~~aln~g~~~a---~~d~v~~~DaD~~~~~~~l~~l~~~~~~~~---~~~~~~~ 192 (335)
+.||+.|+..|+..| ++|+|+++|||. ..|..+.++++.+..+- ...+
T Consensus 120 p~v~~~~~~~g~~~il~~~~~~r~GKG~Am~aGl~~A~~~~gd~Vv~~DaDl-~iP~~v~~~~kgy~aG~~~a~~~~--- 195 (394)
T 2zu9_A 120 PGLAKAFKEVGYTDILDENGMIRSGKGEGMLVGLLLAKAIGAEYVGFVDADN-YIPGAVNEYVKDYAAGFLMSESEY--- 195 (394)
T ss_dssp HHHHHHHHHHTCCTTBCTTSSBCCSHHHHHHHHHHHHHHTTCSEEEECCSCB-SCHHHHHHHHHHHHHHHHHCCSSS---
T ss_pred cchhHHhhhccccccccccccccCChHHHHHHHHHHHhhCCCCEEEEEeCCC-CCHHHHHHHHHHhhhccccccccc---
Confidence 259999999999999 999999999999 67888877777665420 1111
Q ss_pred CcccccccccccCCCeee-eecchhhh--hHhh--hhhhhhHHHHHHHHHHHHHHHhCCCC---ccCCCceeeeeHHHHH
Q 019818 193 DSVTVDSTFRISDIPIAA-FGSRAHLE--EKAL--ATRKWYRNFLMKGFHLVVILTAGPGI---RDTQCGFKMFTRAAAR 264 (335)
Q Consensus 193 ~~~~~~~~~~~~~~~~~v-~g~~~~~~--~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~g~~~~~r~~l~ 264 (335)
+.| +|.+.... .... ...+...++.++..+.+.+.+.+... ..+.+|.++|+|++++
T Consensus 196 ---------------dmVR~~~r~~~~~~~~rl~~~~~GRv~rl~~r~Ln~L~~~l~g~~~d~~~tplsGe~A~rr~ll~ 260 (394)
T 2zu9_A 196 ---------------TMVRLHWRHKPKVTKGTLYFKKWGRVSEITNHYLNLLVSEHTAFETTIMVTGNAGEHAMTMKLAE 260 (394)
T ss_dssp ---------------EEEEEECC-----------------HHHHHHHHHHHHHHHHHSSCCCCCCCTTCSSEEEEHHHHT
T ss_pred ---------------ceeeeccccccccccccccccCCCceehhHHHHHHHHHHHhcCccccCcCCCCchhhHhhHHHHh
Confidence 555 45443210 0000 12344445666665666666655432 2255689999999999
Q ss_pred HhhhhhhhccccchHHHHHHhHHc----------------CCCEEEeeeEEEecCCCcccccchHHHHHHHHHHHhh
Q 019818 265 KLFTNIRLKRWCFDVELVYLCKRF----------------GIPIIEISVNWSEIPGSKVNPLSIPNMLWELALMSVG 325 (335)
Q Consensus 265 ~i~~~~~~~~~~~D~el~~r~~~~----------------G~~i~~~p~~~~~~~~s~~~~~~~~~~~~~~~~i~~~ 325 (335)
.+ ... .+|+...++...+.++ |.+|..+...+-.... .......-+|....+...++
T Consensus 261 ~L--~~~-~gyGvE~~lLv~~~r~~~~~~~~~~~~~~~~~g~~I~qve~~~pH~H~-~~g~~~l~~M~~~~~~~i~~ 333 (394)
T 2zu9_A 261 IL--PFS-TGYSIEPYEIVYILERFGKWENVEEFKDVFDQGIEIFQIETLNPHFHE-DKGKEHVKEMLLLSLATIYH 333 (394)
T ss_dssp TC--CEE-SGGGHHHHHHHHHHHHHSSCCSCGGGHHHHHHCEEEEEEECSSCCCBC-CCCHHHHHHHHHHHHHHHHT
T ss_pred cC--CCC-CCCCCCHHHHHHHHHhhCccccccccccccccCceEEEEeccCCcccc-ccchhHHHHHHHHHHHHHHh
Confidence 87 222 5788899999988888 7788877643221111 11233445565555544443
|
| >2nxv_A ATP synthase subunits region ORF 6; majastridin, ATPase operon, glycosyl transferase, rossmann F sulphur SAD, transferase; 1.10A {Rhodobacter blasticus} PDB: 2qgi_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=2.5e-18 Score=151.57 Aligned_cols=88 Identities=11% Similarity=0.112 Sum_probs=75.0
Q ss_pred CCceEEEEEeccCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCcchHHHHHHHHHHcCCCcEEEEEcCCCCC
Q 019818 64 AEKYISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNHG 143 (335)
Q Consensus 64 ~~~~vsViip~~ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~vi~~~~~~G 143 (335)
..+.+||| |+||+++.|++||+|+.+++.. |.+ +|||||||+|+|. .|
T Consensus 14 ~~~~iSII-~~yN~~~~l~~~l~sl~~sl~~----q~~--~EiIVVDn~s~d~-------------------------~g 61 (249)
T 2nxv_A 14 STLMFSVC-SLVRDQAKYDRLLESFERFGFT----PDK--AEFLAADNREGNQ-------------------------FH 61 (249)
T ss_dssp CCCSEEEE-EEESCHHHHHHHHHHHHHTTCC----TTT--EEEEEEECTTSCS-------------------------CC
T ss_pred CcceEEEE-EeeCCHHHHHHHHHHHHHhccC----CCc--EEEEEEECCCCCc-------------------------cc
Confidence 34679975 6799999999999988775432 232 9999999999862 36
Q ss_pred hHHHHHHHHHhcCCCEEEEEeCCCCCCcchHHHHHHHHHH
Q 019818 144 KGEAIRKGMLHSRGELLLMLDADGATKVTDLEKLESQIHA 183 (335)
Q Consensus 144 k~~aln~g~~~a~~d~v~~~DaD~~~~~~~l~~l~~~~~~ 183 (335)
.+.|+|.|++.|+|||++++|+|+.+++++|+.+++.+++
T Consensus 62 ~a~a~N~Gi~~A~g~yl~fln~D~~~~~~~l~~l~~~~~~ 101 (249)
T 2nxv_A 62 GFSWHKQMLPRCKGRYVIFCHEDVELVDRGYDDLVAAIEA 101 (249)
T ss_dssp TTTHHHHHGGGCCSSEEEEEETTEECSSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCEEEEECCCcccCccHHHHHHHHHHh
Confidence 6889999999999999999999999999999999999986
|
| >2wvl_A Mannosyl-3-phosphoglycerate synthase; GT-A fold, transferase, glycosyltransferase, retaining mecha glucosyl transferase; HET: GDD; 2.81A {Thermus thermophilus} PDB: 2wvk_A* 2wvm_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=4.4e-16 Score=139.39 Aligned_cols=170 Identities=14% Similarity=0.122 Sum_probs=122.9
Q ss_pred CceEEEEEeccCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCcch---HHHHHHHHHH-cCCCcEEEEEcC-
Q 019818 65 EKYISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGT---KRVAFDFVRK-YTVDNVRIILLG- 139 (335)
Q Consensus 65 ~~~vsViip~~ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t---~~~~~~~~~~-~~~~~i~vi~~~- 139 (335)
..++|||||+|||+ ..+|+++++ |.+.++|||+|||||+|.| .++++++++. .. ++.+++..
T Consensus 52 ~~klSIVVPvYNEe---~~lLesVl~--------qi~~d~eIIlVdDGS~D~s~~e~dil~~~~~~~~~--ri~viHQkn 118 (391)
T 2wvl_A 52 LEQTAIVVPTRNER---LKLLEGVLS--------GIPHEALILVASNSSPDRFQMERDLLEEFAHLTER--PALIFHQKD 118 (391)
T ss_dssp HTTEEEEEEESSCC---HHHHHHHHH--------TSCTTSEEEEEECCCHHHHHHHHHHHHHHHHHTTC--CEEEEETTC
T ss_pred HhceEEEEeccCcH---HHHHHHHHh--------cCCCCceEEEEECCCCCChHhHHHHHHHHHhhccc--ceEEEeccC
Confidence 45799999999999 467888888 5777999999999999999 5788888874 44 78888742
Q ss_pred ---------------------CCCChHHHHHHHHHhc---CCCEEEEEeCCCCCCcchHHHHHHHHHHh---ccccccCC
Q 019818 140 ---------------------RNHGKGEAIRKGMLHS---RGELLLMLDADGATKVTDLEKLESQIHAV---GRKEYNHG 192 (335)
Q Consensus 140 ---------------------~~~Gk~~aln~g~~~a---~~d~v~~~DaD~~~~~~~l~~l~~~~~~~---~~~~~~~~ 192 (335)
.+.||+.++..|+..| .++||.|+|||+.++.+..+.+ ..+..+ ....+
T Consensus 119 ~gls~Ar~~~G~~~il~~~~~vR~GKGegmi~Gi~~Ak~~~geYVgFvDADdyi~~~v~Eyv-k~yaag~~~a~s~~--- 194 (391)
T 2wvl_A 119 PALAEALRAGGYPHPIGEDGLVRSGKAEGMILALVFAALSGRRYVGFIDADNYFPGAVWEYV-RAYAAGFLMAKTPF--- 194 (391)
T ss_dssp HHHHHHHHHTTCCTTBCTTSSBCCSHHHHHHHHHHHHHHTTCSEEEECCSCBSCHHHHHHHH-HHHHHHHHHCCSSE---
T ss_pred hHHHHHHHhcCcchhhcccccccccchHHHHHHHHHHHhcCCCEEEEEcCcCCCccCHHHHH-HHHHHHhcccCCCc---
Confidence 2356777777788888 6999999999999976665543 444333 11112
Q ss_pred CcccccccccccCCCeee-eecchhhh--h---HhhhhhhhhHHHHHHHHHHHHHHHhCCCCc---cCCCceeeeeHHHH
Q 019818 193 DSVTVDSTFRISDIPIAA-FGSRAHLE--E---KALATRKWYRNFLMKGFHLVVILTAGPGIR---DTQCGFKMFTRAAA 263 (335)
Q Consensus 193 ~~~~~~~~~~~~~~~~~v-~g~~~~~~--~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~g~~~~~r~~l 263 (335)
..| +|+|.+.. + -....++..++..++.++.+.+...+.... ...+|=.+++-+..
T Consensus 195 ---------------~MVRI~wR~kPK~~~~~~l~f~k~Grvs~itNr~lN~Lis~~~g~et~ii~TgNAGEHAmt~~LA 259 (391)
T 2wvl_A 195 ---------------AMVRILWRYKPKLTEDEGVVFRRYGRVSERNNRALNQLIGGVSGFETDVVKTANAGEHAMSLGLA 259 (391)
T ss_dssp ---------------EEEEEECCCCC------CCHHHHTHHHHHHHHHHHHHHHHHHHSSCCCCCCCSSCSSEEEEHHHH
T ss_pred ---------------ceEEEecccCcccccCCceeEeecCccchhhHHHHHHHHHHhhCcccceEeccCchhhhhhHHHH
Confidence 677 88887432 1 234567788899999999999888776643 33344456777666
Q ss_pred HHh
Q 019818 264 RKL 266 (335)
Q Consensus 264 ~~i 266 (335)
+.+
T Consensus 260 ~~l 262 (391)
T 2wvl_A 260 LRL 262 (391)
T ss_dssp TTS
T ss_pred Hhc
Confidence 554
|
| >2fy7_A Beta-1,4-galactosyltransferase 1; M339H mutant, APO enzyme; HET: PGE; 1.70A {Homo sapiens} PDB: 2aec_A* 2aes_A* 2ae7_A* 2ah9_A* 2agd_A* 2fya_A* 2fyb_A* 3ee5_A* 2fyc_B* 1tw1_A* 1tw5_A* 1tvy_A* 1nmm_B* 1o0r_A* 1yro_B* 1nf5_B* 1nhe_B* 1nkh_B* 1nqi_B* 1nwg_B* ... | Back alignment and structure |
|---|
Probab=99.67 E-value=3.7e-16 Score=140.09 Aligned_cols=152 Identities=14% Similarity=0.124 Sum_probs=105.4
Q ss_pred CCceEEEEEeccCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCcchHHHHHHHHHHcCCCcEEEEEcCCCCC
Q 019818 64 AEKYISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNHG 143 (335)
Q Consensus 64 ~~~~vsViip~~ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~vi~~~~~~G 143 (335)
..|+||||||+||+++.|.++|+++...+. |.+.++||+||||++ |+ ..+
T Consensus 63 ~~~~VSIIIP~yN~~~~L~~~L~sl~~~l~-----q~~~~~EIiVVdds~-d~------------------------~f~ 112 (287)
T 2fy7_A 63 SPHKVAIIIPFRNRQEHLKYWLYYLHPVLQ-----RQQLDYGIYVINQAG-DT------------------------IFN 112 (287)
T ss_dssp CSCEEEEEEEESSCHHHHHHHHHHHHHHHH-----HTTCEEEEEEEEECS-SS------------------------CCC
T ss_pred cCCcEEEEEeeCCCHHHHHHHHHHHHHHHH-----HhcCCceEEEEEeCC-CC------------------------ccc
Confidence 457899999999999999999999985333 256789999999943 31 136
Q ss_pred hHHHHHHHH----HhcCCCEEEEEeCCCCCCcchHHHHHHHHHHhccccccCCCcccccccccccCCCeeeeecchhhhh
Q 019818 144 KGEAIRKGM----LHSRGELLLMLDADGATKVTDLEKLESQIHAVGRKEYNHGDSVTVDSTFRISDIPIAAFGSRAHLEE 219 (335)
Q Consensus 144 k~~aln~g~----~~a~~d~v~~~DaD~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~g~~~~~~~ 219 (335)
++.++|.|+ +.|+||+|+++|+|+.+.++.+. +..+. .+.. ++... .
T Consensus 113 ~a~a~N~G~~~al~~A~gd~i~flD~D~i~~~d~~~-------------~~~~~------------~p~~-~~~~~--~- 163 (287)
T 2fy7_A 113 RAKLLNVGFQEALKDYDYTCFVFSDVDLIPMNDHNA-------------YRCFS------------QPRH-ISVAM--D- 163 (287)
T ss_dssp HHHHHHHHHHHHHHHSCCCEEEEECTTEEESBTTSC-------------CSCCS------------SCEE-CCCEE--G-
T ss_pred hhhhhhhHHHHHHHhCCCCEEEEECCCcccCCCcce-------------EecCC------------CCce-EEEee--c-
Confidence 888999999 88999999999999999999521 10110 0011 00000 0
Q ss_pred HhhhhhhhhHHHHHHHHHHHHHHHhCCCCccCCCceeeeeHHHHHHhhhhh-hhcccc-chHHHHHHhHHcCCCEEEe
Q 019818 220 KALATRKWYRNFLMKGFHLVVILTAGPGIRDTQCGFKMFTRAAARKLFTNI-RLKRWC-FDVELVYLCKRFGIPIIEI 295 (335)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~r~~l~~i~~~~-~~~~~~-~D~el~~r~~~~G~~i~~~ 295 (335)
.+ ..........|++.+++|++++++.+.. ...+|+ ||.||+.|+.++|+++...
T Consensus 164 ------~~---------------~~~~~~~~~~G~~~~~rr~~f~~vgGFde~~~g~g~ED~Dl~~Rl~~~G~~i~~~ 220 (287)
T 2fy7_A 164 ------KF---------------GFSLPYVQYFGGVSALSKQQFLTINGFPNNYWGWGGEDDDIFNRLVFRGMSISRP 220 (287)
T ss_dssp ------GG---------------TTSCSSTTCCCSEEEEEHHHHHHTTSCCSCCSSCSCHHHHHHHHHHHTTCCCBCC
T ss_pred ------cc---------------ccCCCcCceeeeEEEEEHHHHHHcCCCCccccccccchHHHHHHHHHcCCeEEec
Confidence 00 0011223455778899999999994332 223443 8999999999999999843
|
| >1fo8_A Alpha-1,3-mannosyl-glycoprotein beta-1,2-N- acetylglucosaminyltransferase; methylmercury derivative, N- acetylglucosaminyltransferase I; 1.40A {Oryctolagus cuniculus} SCOP: c.68.1.10 PDB: 1fo9_A 1foa_A* 2apc_A* 2am3_A* 2am4_A* 2am5_A* | Back alignment and structure |
|---|
Probab=98.90 E-value=2.6e-09 Score=97.44 Aligned_cols=103 Identities=14% Similarity=0.149 Sum_probs=80.5
Q ss_pred eEEEEEeccCCCCChHHHHHHHHHHHHHhhhcCC-CCceEEEEEECCCCcchHHHHHHHHHHcCCCcEEEEE--------
Q 019818 67 YISLIIPAFNEEHRLPGALDETLNYLQQRAAKDK-SFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIIL-------- 137 (335)
Q Consensus 67 ~vsViip~~ne~~~l~~~l~sl~~~~~~~~~~~~-~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~vi~-------- 137 (335)
.++|+|++||..+ +.++|++++++ ++ ..+++|||.|||+.++|.++++++..+ +..+.
T Consensus 3 ~~pViI~~yNRp~-l~~~L~sL~~~-------~p~~~~~~iivsdDgs~~~~~~vi~~~~~~-----I~~~~~~d~~~~~ 69 (343)
T 1fo8_A 3 VIPILVIACDRST-VRRCLDKLLHY-------RPSAELFPIIVSQDCGHEETAQVIASYGSA-----VTHIRQPDLSNIA 69 (343)
T ss_dssp CCCEEEEESSCTT-HHHHHHHHHHH-------CSCTTTSCEEEEECTTCHHHHHHHHTTGGG-----SEEEECSCCCCCC
T ss_pred cccEEEEECCcHH-HHHHHHHHHhc-------CCCcCCcEEEEEECCCCHHHHHHHHHcCCc-----eEEEEcCCccccc
Confidence 4789999999998 99999999984 22 346899999999999999998876432 33322
Q ss_pred -cCCCCChH----------HHHHHHHHhcCCCEEEEEeCCCCCCcchHHHHHHHHH
Q 019818 138 -LGRNHGKG----------EAIRKGMLHSRGELLLMLDADGATKVTDLEKLESQIH 182 (335)
Q Consensus 138 -~~~~~Gk~----------~aln~g~~~a~~d~v~~~DaD~~~~~~~l~~l~~~~~ 182 (335)
.++|.|.. .|+|.++..+++++++++|+|+.+.|+++.-+.+.++
T Consensus 70 ~~~~N~g~~~y~~ia~h~~~al~~vf~~~~~~~vIiLEDDl~~spdF~~y~~~~l~ 125 (343)
T 1fo8_A 70 VQPDHRKFQGYYKIARHYRWALGQIFHNFNYPAAVVVEDDLEVAPDFFEYFQATYP 125 (343)
T ss_dssp CCTTCGGGHHHHHHHHHHHHHHHHHHTTSCCSEEEEEETTEEECTTHHHHHHHHHH
T ss_pred cchhhcCcccchhHhHHHHHHHHHHHHhccCCEEEEEcCCCeECHHHHHHHHHHHH
Confidence 34455532 5777777777899999999999999999977776664
|
| >2c0n_A A197; thermophil protein, thermophilic virus, STIV, sulfolobus turreted ICOS virus; 1.86A {Sulfolobus turreted icosahedral virus} | Back alignment and structure |
|---|
Probab=97.95 E-value=1.8e-06 Score=70.96 Aligned_cols=109 Identities=14% Similarity=-0.011 Sum_probs=72.8
Q ss_pred HhcCCCEEEEEeCC---CCCCcchHHHHHHHHHHhccccccCCCcccccccccccCCCeeeeecchhhhhHhhhhhhhhH
Q 019818 153 LHSRGELLLMLDAD---GATKVTDLEKLESQIHAVGRKEYNHGDSVTVDSTFRISDIPIAAFGSRAHLEEKALATRKWYR 229 (335)
Q Consensus 153 ~~a~~d~v~~~DaD---~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~g~~~~~~~~~~~~~~~~~ 229 (335)
+....|+++++||| ...+|+.+.+++ +.+. ++|.|++....... .+...
T Consensus 50 ~~~~~dhllfIDAD~~~I~FdPe~V~rLl---~~g~----------------------DVV~GsYp~K~~~~---~s~~a 101 (203)
T 2c0n_A 50 EMKDYDTLAFLDEDVVPIEIDFQKVEAKF---NEGY----------------------DVVCGYYYLKTLRG---YSVYR 101 (203)
T ss_dssp HCTTCCEEEEECTTEEEEECCHHHHHHHH---HHTC----------------------SEEEEECBCTTSSS---BSEES
T ss_pred hcCCCCEEEEEeCCCCccccCHHHHHHHH---hCCC----------------------CEEEEEeeccCCCc---cchHH
Confidence 33567999999999 999999999998 2221 89999886532110 00000
Q ss_pred HHHHHHHHHHHHHHhCCCCccCCCceeeeeHHHHHHhhhhh--------hhccccchHHHHHHhHHcCCCEEEee
Q 019818 230 NFLMKGFHLVVILTAGPGIRDTQCGFKMFTRAAARKLFTNI--------RLKRWCFDVELVYLCKRFGIPIIEIS 296 (335)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~r~~l~~i~~~~--------~~~~~~~D~el~~r~~~~G~~i~~~p 296 (335)
+ .....+.+.++.+.++||.+++|++++++...+ ....++||..||..+..+|+.+--+.
T Consensus 102 ~-------~y~~~i~~~~V~d~~tGF~lIkR~V~e~L~~p~fl~~~~~e~~~~~gEdv~F~~~~k~~~~~~~~~~ 169 (203)
T 2c0n_A 102 K-------DWEKEIFDGEVNGCGLGFTFIKREFLEKIKRPAFLAFKPIESPHWIGEDVYFFSTHKPRTYALSSLK 169 (203)
T ss_dssp S-------SBCSSCCCEECSEECSSEEEEEHHHHTTSCSSCCCC---------CCHHHHHHHHHCCCEEEEEEEE
T ss_pred H-------HHHHhccCceeeeccccEEEEhHHHHHHHhhhhhhcCChhhhccccCCceEEEeccccccccccccc
Confidence 0 011112234788899999999999999982221 22467789999999999998875544
|
| >3lw6_A FI08434P, beta-4-galactosyltransferase 7; protein-Mn-UDP complex, glycosyltransferase; HET: UDP; 1.81A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=97.78 E-value=0.00048 Score=59.98 Aligned_cols=156 Identities=14% Similarity=0.192 Sum_probs=102.9
Q ss_pred CCCCCceEEEEEeccCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCcchHHHHHHHHHHcCCCcEEEEEcCC
Q 019818 61 TDPAEKYISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGR 140 (335)
Q Consensus 61 ~~~~~~~vsViip~~ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~vi~~~~ 140 (335)
.....-+|+||||.+|.++.|...|.-+...+.. ....+.|+||+.. |+ .
T Consensus 46 ~c~~~~kvAIIIPyRdR~~hL~~fl~~lhp~L~r-----Q~l~y~I~VieQ~--~~-----------------------~ 95 (287)
T 3lw6_A 46 DGASVHKMALLVPFRDRFEELLQFVPHMTAFLKR-----QGVAHHIFVLNQV--DR-----------------------F 95 (287)
T ss_dssp -CCCCCEEEEEEEESSCHHHHHHHHHHHHHHHHH-----TTCEEEEEEEEEC--SS-----------------------S
T ss_pred ccCCcceEEEEEEeCCHHHHHHHHHHHHHHHHHH-----cCCceEEEEEecC--CC-----------------------C
Confidence 3345568999999999999999998888877776 3556889888863 11 2
Q ss_pred CCChHHHHHHHHHhcC--CCEEEEEeCCCCCCcchHHHHHHHHHHhccccccCCCcccccccccccCCCeeeeecchhhh
Q 019818 141 NHGKGEAIRKGMLHSR--GELLLMLDADGATKVTDLEKLESQIHAVGRKEYNHGDSVTVDSTFRISDIPIAAFGSRAHLE 218 (335)
Q Consensus 141 ~~Gk~~aln~g~~~a~--~d~v~~~DaD~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~g~~~~~~ 218 (335)
...++..+|.|+..|. .|++++-|.|..+..+... |..+. ..+|.-+....
T Consensus 96 ~FNRa~LlNvGf~ea~~~~d~~ifHDVDLlP~dd~n~-------------Y~c~~----------~~~P~Hls~~~---- 148 (287)
T 3lw6_A 96 RFNRASLINVGFQFASDVYDYIAMHDVDLLPLNDNLL-------------YEYPS----------SLGPLHIAGPK---- 148 (287)
T ss_dssp CCCHHHHHHHHHHHSCTTCCEEEEECTTEEECCTTSC-------------CCCCC----------TTCCEESSCTT----
T ss_pred ccchhheecccHHHHhccCCEEEEecccccccCCCcc-------------ccCCC----------CCCceEEeecc----
Confidence 3568889999999985 5999999999987544221 10000 00000000000
Q ss_pred hHhhhhhhhhHHHHHHHHHHHHHHHhCCCCccCCCceeeeeHHHHHHhhhhhh-hccc-cchHHHHHHhHHcCCCEEEee
Q 019818 219 EKALATRKWYRNFLMKGFHLVVILTAGPGIRDTQCGFKMFTRAAARKLFTNIR-LKRW-CFDVELVYLCKRFGIPIIEIS 296 (335)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~r~~l~~i~~~~~-~~~~-~~D~el~~r~~~~G~~i~~~p 296 (335)
.-.........||..+++++.+.++.+..+ ..+| .||.|+..|+..+|+++...+
T Consensus 149 -----------------------~~~~~~Y~~~~GGv~a~~re~f~kVNGFsn~f~GWGgEDdD~~~Rl~~~G~~i~Rp~ 205 (287)
T 3lw6_A 149 -----------------------LHPKYHYDNFVGGILLVRREHFKQMNGMSNQYWGWGLEDDEFFVRIRDAGLQVTRPQ 205 (287)
T ss_dssp -----------------------TCSSCCCTTCCCSEEEEEHHHHHHTTSCCSCCCSSSSHHHHHHHHHHHTTCCCBCCS
T ss_pred -----------------------ccCCCCcCCccccEEeccHHHHHHcCCCCCcCcCCCccchHHHHHHHHcCCcEEcCC
Confidence 000123344567888999999999933322 1222 469999999999999998764
|
| >1v84_A Galactosylgalactosylxylosylprotein 3-beta- glucuronosyltransferase 1; glycoprotein, glycocyltransferase, HNK-1 epitop; HET: GAL NDG NAG TLA UDP; 1.82A {Homo sapiens} SCOP: c.68.1.7 PDB: 1v83_A* 1v82_A* | Back alignment and structure |
|---|
Probab=94.72 E-value=0.2 Score=42.93 Aligned_cols=98 Identities=15% Similarity=0.153 Sum_probs=64.9
Q ss_pred CceEEEEEeccCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEECCC--CcchHHHHHHHHHHcCCCcEEEEEcCCC-
Q 019818 65 EKYISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGS--SDGTKRVAFDFVRKYTVDNVRIILLGRN- 141 (335)
Q Consensus 65 ~~~vsViip~~ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s--~d~t~~~~~~~~~~~~~~~i~vi~~~~~- 141 (335)
.|.|-||-|+|.......+ |..+.+.+.. -+++.-|||+|+. ++.+.+++++. ++.+.+..-.
T Consensus 2 ~p~I~vVTPTy~R~~Q~a~-LtRLa~TL~~------Vp~L~WIVVEd~~~~t~~va~lL~~s-------gl~y~HL~~~~ 67 (253)
T 1v84_A 2 LPTIHVVTPTYSRPVQKAE-LTRMANTLLH------VPNLHWLVVEDAPRRTPLTARLLRDT-------GLNYTHLHVET 67 (253)
T ss_dssp CCEEEEEEEECCSTTHHHH-HHHHHHHHTT------SSSEEEEEEESSSSCCHHHHHHHHHH-------CCEEEEEECCC
T ss_pred CCEEEEEeCCCCccchhHH-HHHHhhhhcc------CCceEEEEEeCCCCCCHHHHHHHHHc-------CCceEEeecCC
Confidence 4779999999999755443 5666666643 4589999999954 57777777766 4444444211
Q ss_pred ------------C---ChHHHHHHHHHhcC---------CCEEEEEeCCCCCCcchHHH
Q 019818 142 ------------H---GKGEAIRKGMLHSR---------GELLLMLDADGATKVTDLEK 176 (335)
Q Consensus 142 ------------~---Gk~~aln~g~~~a~---------~d~v~~~DaD~~~~~~~l~~ 176 (335)
. --...+|.|++..+ .-+|.|.|+|...+-+..++
T Consensus 68 p~~~~~~~~~~~~~~~rg~~qRn~AL~~Ir~~~~~~~~~~GVVyFADDdNtYdl~LF~e 126 (253)
T 1v84_A 68 PRNYKLRGDARDPRIPRGTMQRNLALRWLRETFPRNSSQPGVVYFADDDNTYSLELFEE 126 (253)
T ss_dssp CHHHHCC-------CCTTHHHHHHHHHHHHHHSCSSSCCCEEEEECCTTSEECHHHHHH
T ss_pred CccccccccccCccccchHHHHHHHHHHHHHhcccccccceeEEEecCCCcccHHHHHH
Confidence 1 11357889997753 24567778888877666655
|
| >3cu0_A Galactosylgalactosylxylosylprotein 3-beta- glucuronosyltransferase 3; glcat-I, glycosyltransferase, heparan sulfate biosynthesis, glycoprotein; HET: GAL UDP; 1.90A {Homo sapiens} SCOP: c.68.1.7 PDB: 1kws_A* 1fgg_A* | Back alignment and structure |
|---|
Probab=94.27 E-value=0.29 Score=42.44 Aligned_cols=100 Identities=13% Similarity=0.079 Sum_probs=63.4
Q ss_pred CCCceEEEEEeccCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEECCC--CcchHHHHHHHHHHcCCCcEEEEEcC-
Q 019818 63 PAEKYISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGS--SDGTKRVAFDFVRKYTVDNVRIILLG- 139 (335)
Q Consensus 63 ~~~~~vsViip~~ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s--~d~t~~~~~~~~~~~~~~~i~vi~~~- 139 (335)
...|.|-||-|+|.......+ |..+.+.+.. -+++.-|||+|+. ++.+.+++++. ++.+.+..
T Consensus 18 ~~~p~IivVTPTy~R~~Q~a~-LtRLa~TL~~------Vp~L~WIVVEd~~~~t~~va~lL~rs-------Gl~y~HL~~ 83 (281)
T 3cu0_A 18 GSHMTIYVVTPTYARLVQKAE-LVRLSQTLSL------VPRLHWLLVEDAEGPTPLVSGLLAAS-------GLLFTHLVV 83 (281)
T ss_dssp ---CEEEEEEEECCSTTHHHH-HHHHHHHHTT------SSSEEEEEEESSSSCCHHHHHHHHHH-------CSEEEEEEC
T ss_pred CCCCeEEEEeCCCCCcchhHH-HHHHHHHHhc------CCceEEEEEcCCCCCCHHHHHHHHHc-------CCceEEecc
Confidence 346789999999999765443 4666666553 3489999999963 56677777765 34443332
Q ss_pred -CCCC--------------hHHHHHHHHHhcC----------------C-CEEEEEeCCCCCCcchHHH
Q 019818 140 -RNHG--------------KGEAIRKGMLHSR----------------G-ELLLMLDADGATKVTDLEK 176 (335)
Q Consensus 140 -~~~G--------------k~~aln~g~~~a~----------------~-d~v~~~DaD~~~~~~~l~~ 176 (335)
.+.. -...+|.|++..+ . -+|.|.|+|...+-+..++
T Consensus 84 ~~p~~~~~~~~dp~w~~~rg~~QRN~AL~~Ir~~~~~~~~~~~~~~~~~~GVVyFADDDNtYsl~LFde 152 (281)
T 3cu0_A 84 LTPKAQRLREGEPGWVHPRGVEQRNKALDWLRGRGGAVGGEKDPPPPGTQGVVYFADDDNTYSRELFEE 152 (281)
T ss_dssp CCC-----------CCCCCSHHHHHHHHHHHTTCCCEEEECCSCCCTTCCEEEEECCTTSEECHHHHHH
T ss_pred CCCccccccccccccccchhHHHHHHHHHHHHhhccccchhccccccCCceeEEEecCCCcccHHHHHH
Confidence 1111 1356899997766 2 3566778888877665555
|
| >1qwj_A Cytidine monophospho-N-acetylneuraminic acid synthetase; CMP-5-N-acetylneuraminic acid synthetase, CMP-NEU5AC, sialic acid, glycosylation; HET: NCC; 2.80A {Mus musculus} SCOP: c.68.1.13 | Back alignment and structure |
|---|
Probab=93.68 E-value=0.79 Score=38.50 Aligned_cols=72 Identities=15% Similarity=0.161 Sum_probs=47.7
Q ss_pred eEEEEEECCCCcchHHHHHHHHHHcCCCcEEEEEcCC-----CCChHHHHHHHHHhc-CCCEEEEEeCCCC-CCcchHHH
Q 019818 104 YEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGR-----NHGKGEAIRKGMLHS-RGELLLMLDADGA-TKVTDLEK 176 (335)
Q Consensus 104 ~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~vi~~~~-----~~Gk~~aln~g~~~a-~~d~v~~~DaD~~-~~~~~l~~ 176 (335)
-+|+|+.+ .+. +++...++ ++.++..++ ..|-..++..|++.. ..|.++++++|.. ++++.+.+
T Consensus 45 ~~ivv~~~--~~~----i~~~~~~~---g~~~~~~~~~~~~~~~~~~~~v~~al~~~~~~d~vlv~~~D~Pli~~~~i~~ 115 (229)
T 1qwj_A 45 QSVWVSTD--HDE----IENVAKQF---GAQVHRRSSETSKDSSTSLDAIVEFLNYHNEVDIVGNIQATSPCLHPTDLQK 115 (229)
T ss_dssp SEEEEEES--CHH----HHHHHHHT---TCEEEECCGGGSSTTCCHHHHHHHHHTTCTTCSEEEEECTTCTTCCHHHHHH
T ss_pred CEEEEECC--hHH----HHHHHHHc---CCEEEeChhhhcCCCCcHHHHHHHHHHhcCCCCEEEEecCCCCcCCHHHHHH
Confidence 47777774 222 23333333 355555542 234456778888876 5799999999996 58899999
Q ss_pred HHHHHHHh
Q 019818 177 LESQIHAV 184 (335)
Q Consensus 177 l~~~~~~~ 184 (335)
+++.+.+.
T Consensus 116 l~~~~~~~ 123 (229)
T 1qwj_A 116 VAEMIREE 123 (229)
T ss_dssp HHHHHHSS
T ss_pred HHHHHHhC
Confidence 99888653
|
| >1omz_A Alpha-1,4-N-acetylhexosaminyltransferase EXTL2; rossmann fold, DXD motif; HET: UD2; 2.10A {Mus musculus} SCOP: c.68.1.15 PDB: 1omx_A* 1on6_A* 1on8_A* | Back alignment and structure |
|---|
Probab=92.70 E-value=0.089 Score=46.26 Aligned_cols=109 Identities=16% Similarity=0.067 Sum_probs=68.7
Q ss_pred ceEEEEEeccCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCcchHH-HHHHHHHHcCCCcEEEEEcCCCCCh
Q 019818 66 KYISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKR-VAFDFVRKYTVDNVRIILLGRNHGK 144 (335)
Q Consensus 66 ~~vsViip~~ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~-~~~~~~~~~~~~~i~vi~~~~~~Gk 144 (335)
..+||||-+|+..+.|. .+++... .-..--||+||=++..+...+ ....+... ...++++..+.|.
T Consensus 28 ~~FTvvi~ty~R~~~L~----~lv~~~~-----~~~~v~~IvVvWn~~~~~pp~~~~~~~~~~--~vpv~v~~~~~ns-- 94 (293)
T 1omz_A 28 DSFTLIMQTYNRTDLLL----RLLNHYQ-----AVPSLHKVIVVWNNVGEKGPEELWNSLGPH--PIPVIFKPQTANK-- 94 (293)
T ss_dssp TCEEEEEEESSCHHHHH----HHHHHHT-----TSTTEEEEEEEECCTTCCCTHHHHHHTCCC--SSCEEEEECSSCC--
T ss_pred CceEEEEEeecccHHHH----HHHHHHh-----cCCCCCeEEEEeCCCCCCCChhhccccCCC--CccEEEEeCCCCc--
Confidence 56999999999743333 3333222 244567898888776433332 22222110 1268888776542
Q ss_pred HHHHHHHHHhcCCCEEEEEeCCCCCCcchHHHHHHHHHHhccc
Q 019818 145 GEAIRKGMLHSRGELLLMLDADGATKVTDLEKLESQIHAVGRK 187 (335)
Q Consensus 145 ~~aln~g~~~a~~d~v~~~DaD~~~~~~~l~~l~~~~~~~~~~ 187 (335)
-.++-.-....++|.|+.+|+|..++.+.|+...+..++.++.
T Consensus 95 LnnRF~p~~~i~T~AVLslDDDv~l~~~el~faF~vWr~~PdR 137 (293)
T 1omz_A 95 MRNRLQVFPEVETNAVLMVDDDTLISAQDLVFAFSIWQQFPDQ 137 (293)
T ss_dssp GGGGGSCCTTCCSSEEEEECTTEEECHHHHHHHHHHHTTSTTS
T ss_pred hhhccCCCccCCcCEEEEEcCCCCCCHHHHHHHHHHHHHCccc
Confidence 1111112234578999999999999999999999999887753
|
| >3k8d_A 3-deoxy-manno-octulosonate cytidylyltransferase; KDSB synthetase KDO complex, lipopolysaccharide biosynthesis magnesium, nucleotidyltransferase; HET: KDO CTP; 1.90A {Escherichia coli} SCOP: c.68.1.13 PDB: 3k8e_C 1vh1_A 3jtj_A* | Back alignment and structure |
|---|
Probab=92.68 E-value=0.98 Score=39.09 Aligned_cols=103 Identities=13% Similarity=0.217 Sum_probs=61.5
Q ss_pred ceEEEEEeccCCCCChH----------HHHHHHHHHHHHhhhcCCCCceEEEEEECCCCcchHHHHHHHHHHcCCCcEEE
Q 019818 66 KYISLIIPAFNEEHRLP----------GALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRI 135 (335)
Q Consensus 66 ~~vsViip~~ne~~~l~----------~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~v 135 (335)
+++.+|||+......++ ..|.-.++.+.. .. --+|+|+.| .+. +++....+ ++.+
T Consensus 17 M~~~aIIlA~G~stRlp~K~L~~i~GkPmi~~~l~~l~~-----~~-i~~IvV~t~--~~~----i~~~~~~~---g~~v 81 (264)
T 3k8d_A 17 MSFVVIIPARYASTRLPGKPLVDINGKPMIVHVLERARE-----SG-AERIIVATD--HED----VARAVEAA---GGEV 81 (264)
T ss_dssp -CCEEEEECCSCCSSSTTGGGCEETTEEHHHHHHHHHHH-----TT-CSEEEEEES--CHH----HHHHHHHT---TCEE
T ss_pred CceEEEEEcCCCCCCCCCcceeeECCeEHHHHHHHHHHh-----CC-CCEEEEECC--HHH----HHHHHHHc---CCEE
Confidence 34778888877766665 123333333332 22 358888775 222 23333343 3455
Q ss_pred EEc--CCCCChHHHHHHHHHhc---CCCEEEEEeCCCC-CCcchHHHHHHHHHHh
Q 019818 136 ILL--GRNHGKGEAIRKGMLHS---RGELLLMLDADGA-TKVTDLEKLESQIHAV 184 (335)
Q Consensus 136 i~~--~~~~Gk~~aln~g~~~a---~~d~v~~~DaD~~-~~~~~l~~l~~~~~~~ 184 (335)
+.. ....|.+. +..+++.. ..|+++++++|.. ++++.+.++++.+.+.
T Consensus 82 ~~~~~~~~~Gt~~-i~~~~~~l~~~~~d~vlv~~gD~Pli~~~~i~~li~~~~~~ 135 (264)
T 3k8d_A 82 CMTRADHQSGTER-LAEVVEKCAFSDDTVIVNVQGDEPMIPATIIRQVADNLAQR 135 (264)
T ss_dssp EECCTTCCSHHHH-HHHHHHHHTCCTTCEEEEECTTCTTCCHHHHHHHHHHHHTS
T ss_pred EEecCCCCCCHHH-HHHHHHHhccCCCCEEEEEcCCcccCCHHHHHHHHHHHhhc
Confidence 442 23455544 55566554 5699999999995 5889999999998653
|
| >3oam_A 3-deoxy-manno-octulosonate cytidylyltransferase; center for structural genomics of infectious diseases; 1.75A {Vibrio cholerae o1 biovar el tor} SCOP: c.68.1.13 | Back alignment and structure |
|---|
Probab=92.39 E-value=1.8 Score=36.88 Aligned_cols=72 Identities=10% Similarity=0.194 Sum_probs=45.9
Q ss_pred ceEEEEEECCCCcchHHHHHHHHHHcCCCcEEEEEc--CCCCChHHHHHHHHHhc---CCCEEEEEeCCCC-CCcchHHH
Q 019818 103 TYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILL--GRNHGKGEAIRKGMLHS---RGELLLMLDADGA-TKVTDLEK 176 (335)
Q Consensus 103 ~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~vi~~--~~~~Gk~~aln~g~~~a---~~d~v~~~DaD~~-~~~~~l~~ 176 (335)
.-+|+|+.| .+ .+++....+ ++.++.. ....|.++ +..+++.. ..|.++++++|.. ++++.+.+
T Consensus 42 ~~~ivVv~~--~~----~i~~~~~~~---g~~v~~~~~~~~~Gt~~-~~~~~~~l~~~~~d~vlv~~gD~Pli~~~~i~~ 111 (252)
T 3oam_A 42 ADRVIIATD--DE----RVEQAVQAF---GGVVCMTSPNHQSGTER-LAEVVAKMAIPADHIVVNVQGDEPLIPPAIIRQ 111 (252)
T ss_dssp CSEEEEEES--CH----HHHHHHHHT---TCEEEECCTTCCSHHHH-HHHHHHHTTCCTTSEEEECCTTCTTCCHHHHHH
T ss_pred CCeEEEECC--HH----HHHHHHHHc---CCEEEEcCCCCCCcHHH-HHHHHHhcCcCCCCEEEEEeCCeeecCHHHHHH
Confidence 357888775 22 233333333 3444433 23456665 44555554 4699999999994 68999999
Q ss_pred HHHHHHHh
Q 019818 177 LESQIHAV 184 (335)
Q Consensus 177 l~~~~~~~ 184 (335)
+++.+.+.
T Consensus 112 l~~~~~~~ 119 (252)
T 3oam_A 112 VADNLAAC 119 (252)
T ss_dssp HHHHHHHS
T ss_pred HHHHHHhc
Confidence 99998764
|
| >2d0j_A Galactosylgalactosylxylosylprotein 3-beta- glucuronosyltransferase 2; rossmann-like fold, glucuronyltransferase; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=92.18 E-value=0.77 Score=39.13 Aligned_cols=99 Identities=17% Similarity=0.225 Sum_probs=61.6
Q ss_pred CceEEEEEeccCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCc--chHHHHHHHHHHcCCCcEEEEEc--C-
Q 019818 65 EKYISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSD--GTKRVAFDFVRKYTVDNVRIILL--G- 139 (335)
Q Consensus 65 ~~~vsViip~~ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d--~t~~~~~~~~~~~~~~~i~vi~~--~- 139 (335)
.|.|-||-|+|.......+ |..+.+.+.. -+++.-|||+|+..- .+.+++++. ++.+.+. +
T Consensus 2 ~p~I~vVTPTy~R~~Q~a~-LtRLa~TL~~------Vp~l~WIVVEd~~~~~~~v~~lL~~s-------gl~y~HL~~~~ 67 (246)
T 2d0j_A 2 LPTIYAITPTYSRPVQKAE-LTRLANTFRQ------VAQLHWILVEDAAARSELVSRFLARA-------GLPSTHLHVPT 67 (246)
T ss_dssp CCCEEEEEEECCSTTHHHH-HHHHHHHHTT------STTEEEEEEESSSSCCHHHHHHHHHS-------CSCEEEEECCC
T ss_pred CCEEEEEeCCCCccchhHH-HHHHHHHHhc------CCceEEEEEcCCCCCCHHHHHHHHHc-------CCceEEEecCC
Confidence 3669999999999655443 5666666653 335888999997543 234555443 2333332 1
Q ss_pred -CC---CC---hHHHHHHHHHhcC---------CCEEEEEeCCCCCCcchHHHH
Q 019818 140 -RN---HG---KGEAIRKGMLHSR---------GELLLMLDADGATKVTDLEKL 177 (335)
Q Consensus 140 -~~---~G---k~~aln~g~~~a~---------~d~v~~~DaD~~~~~~~l~~l 177 (335)
++ .+ -...+|.|++..+ .-+|.|.|+|...+-+..++|
T Consensus 68 ~~~~~~~~~prg~~qRn~AL~~Ir~~~~~~~~~~GVVyFADDdNtY~l~LF~em 121 (246)
T 2d0j_A 68 PRRYKRPGLPRATEQRNAGLAWLRQRHQHQRAQPGVLFFADDDNTYSLELFQEM 121 (246)
T ss_dssp CCC----CCCCCHHHHHHHHHHHHHHSCSSSCCCCEEEECCTTCEECTHHHHHH
T ss_pred ccccCCCCCcchHHHHHHHHHHHHHhcccccCccceEEEccCCCcccHHHHHHH
Confidence 11 11 1367889987642 257788899998887766663
|
| >3tqd_A 3-deoxy-manno-octulosonate cytidylyltransferase; cell envelope; 1.80A {Coxiella burnetii} SCOP: c.68.1.0 | Back alignment and structure |
|---|
Probab=92.10 E-value=1.8 Score=37.17 Aligned_cols=72 Identities=15% Similarity=0.272 Sum_probs=47.1
Q ss_pred ceEEEEEECCCCcchHHHHHHHHHHcCCCcEEEEEc--CCCCChHHHHHHHHHhc---CCCEEEEEeCCCC-CCcchHHH
Q 019818 103 TYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILL--GRNHGKGEAIRKGMLHS---RGELLLMLDADGA-TKVTDLEK 176 (335)
Q Consensus 103 ~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~vi~~--~~~~Gk~~aln~g~~~a---~~d~v~~~DaD~~-~~~~~l~~ 176 (335)
--+|+|+.| .+ .+++....+ ++.++.. ....|.+. +..|++.. ..|.++++++|.. ++++.+.+
T Consensus 49 i~~VvVvt~--~~----~i~~~~~~~---g~~v~~~~~~~~~Gt~~-i~~a~~~l~~~~~d~vlv~~gD~Pli~~~~i~~ 118 (256)
T 3tqd_A 49 AEEVVIATD--DK----RIRQVAEDF---GAVVCMTSSDHQSGTER-IAEAAVALGFEDDEIIVCLQGDEPLIPPDAIRK 118 (256)
T ss_dssp CSEEEEEES--CH----HHHHHHHHT---TCEEEECCTTCCSHHHH-HHHHHHHTTCCTTCEEEEECTTCCCCCHHHHHH
T ss_pred CCEEEEECC--HH----HHHHHHHHc---CCeEEEeCCCCCCcHHH-HHHHHHHhCcCCCCEEEEEeCCcccCCHHHHHH
Confidence 457888765 22 233333343 3445443 22355554 66677765 4699999999994 68999999
Q ss_pred HHHHHHHh
Q 019818 177 LESQIHAV 184 (335)
Q Consensus 177 l~~~~~~~ 184 (335)
+++.+.++
T Consensus 119 li~~~~~~ 126 (256)
T 3tqd_A 119 LAEDLDEH 126 (256)
T ss_dssp HHHHHHHC
T ss_pred HHHHHHhC
Confidence 99999764
|
| >1h7e_A 3-deoxy-manno-octulosonate cytidylyltransferase; nucleotidyltransferase, CMP-KDO synthetase, nucleoside monophosphate glycosides; 1.83A {Escherichia coli} SCOP: c.68.1.13 PDB: 1gqc_A* 1gq9_A 1h6j_A 1h7f_A* 1h7g_A* 1h7h_A* 1h7t_A* | Back alignment and structure |
|---|
Probab=91.35 E-value=2.7 Score=35.28 Aligned_cols=90 Identities=14% Similarity=0.181 Sum_probs=55.0
Q ss_pred CCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCcchHHHHHHHHHHcCCCcEEEEEcC-C-CCChHHHHHHHHH
Q 019818 76 NEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLG-R-NHGKGEAIRKGML 153 (335)
Q Consensus 76 ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~vi~~~-~-~~Gk~~aln~g~~ 153 (335)
+....|..+++.+.+ ....-+|+|+.+. +. +.+...++ ++.++..+ + ..|-+++ ..|++
T Consensus 25 ~g~pli~~~i~~~~~---------~~~~~~ivvv~~~--~~----i~~~~~~~---~~~~~~~~~~~~~g~~~~-~~~~~ 85 (245)
T 1h7e_A 25 VGKPMIQHVYERALQ---------VAGVAEVWVATDD--PR----VEQAVQAF---GGKAIMTRNDHESGTDRL-VEVMH 85 (245)
T ss_dssp TTEEHHHHHHHHHHT---------CTTCCEEEEEESC--HH----HHHHHHHT---TCEEEECCSCCSSHHHHH-HHHHH
T ss_pred CCchHHHHHHHHHHh---------CCCCCeEEEECCc--HH----HHHHHHHc---CCeEEeCCCccCCcHHHH-HHHHH
Confidence 344555555555543 2222578888753 22 23333333 46666653 2 2445444 45666
Q ss_pred hcCCCEEEEEeCCCC-CCcchHHHHHHHHHHh
Q 019818 154 HSRGELLLMLDADGA-TKVTDLEKLESQIHAV 184 (335)
Q Consensus 154 ~a~~d~v~~~DaD~~-~~~~~l~~l~~~~~~~ 184 (335)
....+.++++++|.. ++++.+.++++.+.+.
T Consensus 86 ~~~~~~~lv~~~D~P~~~~~~i~~l~~~~~~~ 117 (245)
T 1h7e_A 86 KVEADIYINLQGDEPMIRPRDVETLLQGMRDD 117 (245)
T ss_dssp HSCCSEEEECCTTCTTCCHHHHHHHHHHHHHC
T ss_pred hCCCCEEEEEcCCcCcCCHHHHHHHHHHHHhC
Confidence 667799999999996 5889999999988654
|
| >2wee_A MOBA-related protein; unknown function; 1.65A {Mycobacterium tuberculosis H37RV} PDB: 2we9_A 2yes_A | Back alignment and structure |
|---|
Probab=90.85 E-value=0.28 Score=39.90 Aligned_cols=88 Identities=10% Similarity=0.177 Sum_probs=55.3
Q ss_pred CCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCcchHHHHHHHHHHcCCCcEEEEEcC-CCCChHHHHHHHHHh
Q 019818 76 NEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLG-RNHGKGEAIRKGMLH 154 (335)
Q Consensus 76 ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~vi~~~-~~~Gk~~aln~g~~~ 154 (335)
+....|..+++.+.+ .. .-+|+|+.+... +.+++....+ ++.++..+ ...|...++..|++.
T Consensus 29 ~g~pll~~~l~~l~~---------~~-~~~i~vv~~~~~----~~~~~~~~~~---~~~~~~~~~~~~g~~~~i~~al~~ 91 (197)
T 2wee_A 29 RDTTVLGATLDVARQ---------AG-FDQLILTLGGAA----SAVRAAMALD---GTDVVVVEDVERGCAASLRVALAR 91 (197)
T ss_dssp TTEEHHHHHHHHHHH---------TT-CSEEEEEECTTH----HHHHHHSCCT---TSEEEECC----CCHHHHHHHHTT
T ss_pred CCccHHHHHHHHHHh---------cC-CCcEEEEeCCCH----HHHHHHhccC---CCEEEECCCcccCHHHHHHHHHHH
Confidence 344556666666654 11 347777765322 2223322222 45666544 245888999999988
Q ss_pred c--CCCEEEEEeCCCC-CCcchHHHHHHH
Q 019818 155 S--RGELLLMLDADGA-TKVTDLEKLESQ 180 (335)
Q Consensus 155 a--~~d~v~~~DaD~~-~~~~~l~~l~~~ 180 (335)
. ..+.++++++|.. ++++.+.++++.
T Consensus 92 ~~~~~~~vlv~~~D~P~~~~~~i~~l~~~ 120 (197)
T 2wee_A 92 VHPRATGIVLMLGDQPQVAPATLRRIIDV 120 (197)
T ss_dssp SCTTEEEEEEEETTCTTCCHHHHHHHHHH
T ss_pred hcccCCeEEEEeCCcCCCCHHHHHHHHhh
Confidence 7 4689999999995 688899998876
|
| >2waw_A MOBA relate protein; unknown function; HET: PGE; 1.60A {Mycobacterium SP} | Back alignment and structure |
|---|
Probab=90.47 E-value=0.79 Score=37.17 Aligned_cols=70 Identities=13% Similarity=0.252 Sum_probs=47.3
Q ss_pred eEEEEEECCCCcchHHHHHHHHHHcCCCcEEEEEcC-CCCChHHHHHHHHHhc--CCCEEEEEeCCCC-CCcchHHHHHH
Q 019818 104 YEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLG-RNHGKGEAIRKGMLHS--RGELLLMLDADGA-TKVTDLEKLES 179 (335)
Q Consensus 104 ~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~vi~~~-~~~Gk~~aln~g~~~a--~~d~v~~~DaD~~-~~~~~l~~l~~ 179 (335)
-+|+|+.+...+ .+++....+ ++.++..+ ...|...++..|++.. ..+.++++++|.. ++++.+.++++
T Consensus 47 ~~i~vv~~~~~~----~~~~~~~~~---~~~~~~~~~~~~g~~~~i~~al~~~~~~~~~vlv~~~D~P~~~~~~i~~l~~ 119 (199)
T 2waw_A 47 DQLIVTLGGAAD----EVLEKVELD---GLDIVLVDDAGLGCSSSLKSALTWVDPTAEGIVLMLGDQPGITASAVASLIA 119 (199)
T ss_dssp SEEEEEECTTHH----HHHHHSCCT---TSEEEECCCCCTTCCCHHHHHHHTSCTTCSEEEEEETTCTTCCHHHHHHHHH
T ss_pred CcEEEEeCCCHH----HHHHHhccC---CCEEEECCCcccCHHHHHHHHHHhhhccCCeEEEEeCCcccCCHHHHHHHHh
Confidence 478877653222 223332222 35555543 2357778899999887 5699999999997 48888999888
Q ss_pred H
Q 019818 180 Q 180 (335)
Q Consensus 180 ~ 180 (335)
.
T Consensus 120 ~ 120 (199)
T 2waw_A 120 G 120 (199)
T ss_dssp H
T ss_pred h
Confidence 7
|
| >3st8_A Bifunctional protein GLMU; acetyltransferase, pyrophosphorylase, rossmann fold, LEFT-handed-beta-helix, cell shape; HET: COA GP1 UD1; 1.98A {Mycobacterium tuberculosis} PDB: 3spt_A* 3foq_A 3dk5_A 3d8v_A 3d98_A* 3dj4_A 2qkx_A* | Back alignment and structure |
|---|
Probab=89.87 E-value=2.6 Score=39.90 Aligned_cols=102 Identities=13% Similarity=0.147 Sum_probs=69.6
Q ss_pred EEeccCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCcchHHHHHHHHHHcCCCcEEEEEcCCCCChHHHHHH
Q 019818 71 IIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNHGKGEAIRK 150 (335)
Q Consensus 71 iip~~ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~vi~~~~~~Gk~~aln~ 150 (335)
++|+.|. +.|.-.|+.+.+. ..-+|+||..-..+.-.+.+.+....+. .++.++..++..|-+.|+..
T Consensus 34 l~pv~gk-p~i~~~l~~~~~~----------g~~~i~vv~~~~~~~i~~~~~~~~~~~~-~~i~~~~q~~~lGTa~Av~~ 101 (501)
T 3st8_A 34 LHTLAGR-SMLSHVLHAIAKL----------APQRLIVVLGHDHQRIAPLVGELADTLG-RTIDVALQDRPLGTGHAVLC 101 (501)
T ss_dssp GCEETTE-EHHHHHHHHHHHH----------CCSEEEEEECTTHHHHHHHHHHHHHHHT-SCCEEEECSSCCCHHHHHHH
T ss_pred HeEECCh-hHHHHHHHHHHhC----------CCCEEEEEeCCCHHHHHHHHHHHHHhcC-CcEEEEEcCCCCCcHHHHHH
Confidence 6777776 3566666666552 2457888876544444555555444443 26888888888999999999
Q ss_pred HHHhcCC---CEEEEEeCCC-CCCcchHHHHHHHHHHh
Q 019818 151 GMLHSRG---ELLLMLDADG-ATKVTDLEKLESQIHAV 184 (335)
Q Consensus 151 g~~~a~~---d~v~~~DaD~-~~~~~~l~~l~~~~~~~ 184 (335)
++..... +.++++.+|. ....+.+..|++...+.
T Consensus 102 a~~~l~~~~~~~~lvl~gd~~l~~~~~~~~l~~~h~~~ 139 (501)
T 3st8_A 102 GLSALPDDYAGNVVVTSGDTPLLDADTLADLIATHRAV 139 (501)
T ss_dssp HHTTSCTTCCSEEEEEETTCTTCCHHHHHHHHHHHHHT
T ss_pred HHHHhccccccceeeecCcceeecHHHHHHHHHHHhhc
Confidence 9988753 4677777776 45778888888877654
|
| >1ezi_A CMP-N-acetylneuraminic acid synthetase; homodimer, alpha-beta-alpha, transferase; 2.00A {Neisseria meningitidis} SCOP: c.68.1.13 PDB: 1eyr_A | Back alignment and structure |
|---|
Probab=89.48 E-value=2.2 Score=35.52 Aligned_cols=88 Identities=8% Similarity=0.113 Sum_probs=53.9
Q ss_pred CCChHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCcchHHHHHHHHHHcCCCcEEEEEcC-----CCCChHHHHHHHH
Q 019818 78 EHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLG-----RNHGKGEAIRKGM 152 (335)
Q Consensus 78 ~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~vi~~~-----~~~Gk~~aln~g~ 152 (335)
...|..+++.+.+. ..--+|+|+.+. +.. ++..+.+ ++.++..+ ...|...++..|+
T Consensus 29 kpll~~~l~~~~~~---------~~~~~ivvv~~~--~~i----~~~~~~~---~~~~~~~~~~~~~~~~g~~~sv~~~l 90 (228)
T 1ezi_A 29 ISLLGHTINAAISS---------KCFDRIIVSTDG--GLI----AEEAKNF---GVEVVLRPAELASDTASSISGVIHAL 90 (228)
T ss_dssp EEHHHHHHHHHHHH---------CCCSEEEEEESC--HHH----HHHHHHT---TCEEEECCC------CHHHHHHHHHH
T ss_pred cCHHHHHHHHHHhC---------CCCCEEEEECCC--HHH----HHHHHHc---CCEEEeCchHHcCCCCChHHHHHHHH
Confidence 34555666665542 212478888752 222 2333333 34555443 2345677888888
Q ss_pred HhcC--CCEEEEEeCCCC-CCcchHHHHHHHHHH
Q 019818 153 LHSR--GELLLMLDADGA-TKVTDLEKLESQIHA 183 (335)
Q Consensus 153 ~~a~--~d~v~~~DaD~~-~~~~~l~~l~~~~~~ 183 (335)
+... .|.++++++|.. ++++.+.++++.+.+
T Consensus 91 ~~~~~~~d~vlv~~~D~P~~~~~~i~~l~~~~~~ 124 (228)
T 1ezi_A 91 ETIGSNSGTVTLLQPTSPLRTGAHIREAFSLFDE 124 (228)
T ss_dssp HHHTCCSEEEEECCTTCTTCCHHHHHHHHTTCCT
T ss_pred HHhCCCCCEEEEEcCCCCcCCHHHHHHHHHHHHh
Confidence 8773 589999999996 578889998876643
|
| >4fcu_A 3-deoxy-manno-octulosonate cytidylyltransferase; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.90A {Acinetobacter baumannii} PDB: 3pol_A | Back alignment and structure |
|---|
Probab=89.39 E-value=5.7 Score=33.92 Aligned_cols=73 Identities=7% Similarity=0.137 Sum_probs=46.6
Q ss_pred ceEEEEEECCCCcchHHHHHHHHHHcCCCcEEEEEc-CCCCChHHHHHHHHHhc---CCCEEEEEeCCCC-CCcchHHHH
Q 019818 103 TYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILL-GRNHGKGEAIRKGMLHS---RGELLLMLDADGA-TKVTDLEKL 177 (335)
Q Consensus 103 ~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~vi~~-~~~~Gk~~aln~g~~~a---~~d~v~~~DaD~~-~~~~~l~~l 177 (335)
--+|+|+.|. + .+.+....+ ++.++.. +...+-..++..|++.. ..|+++++++|.. ++++.+.++
T Consensus 42 ~~~vvVvt~~--~----~i~~~~~~~---g~~v~~~~~~~~~Gt~~i~~a~~~~~~~~~d~vlv~~gD~Pli~~~~i~~l 112 (253)
T 4fcu_A 42 FDDLCVATDD--E----RIAEICRAE---GVDVVLTSADHPSGTDRLSEVARIKGWDADDIIVNVQGDEPLLPAQLVQQV 112 (253)
T ss_dssp CCEEEEEESC--H----HHHHHHHTT---TCCEEECCTTCCCHHHHHHHHHHHHTCCTTCEEEECCTTCTTCCHHHHHHH
T ss_pred CCEEEEECCH--H----HHHHHHHHc---CCeEEEeCCCCCChHHHHHHHHHhcCcCCCCEEEEEeCCcccCCHHHHHHH
Confidence 4578888752 2 233333333 3444432 32333224567777765 3599999999994 688999999
Q ss_pred HHHHHHh
Q 019818 178 ESQIHAV 184 (335)
Q Consensus 178 ~~~~~~~ 184 (335)
++.+.+.
T Consensus 113 i~~~~~~ 119 (253)
T 4fcu_A 113 AKLLVDK 119 (253)
T ss_dssp HHHHHHC
T ss_pred HHHHHhC
Confidence 9999765
|
| >3ngw_A Molybdopterin-guanine dinucleotide biosynthesis P (MOBA); alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.31A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=88.73 E-value=1.8 Score=35.82 Aligned_cols=85 Identities=15% Similarity=0.148 Sum_probs=57.6
Q ss_pred CCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCcchHHHHHHHHHHcCCCcEEEEEcC-CCCChHHHHHHHHHh
Q 019818 76 NEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLG-RNHGKGEAIRKGMLH 154 (335)
Q Consensus 76 ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~vi~~~-~~~Gk~~aln~g~~~ 154 (335)
+....|..+++.+.. . +|+||.+. + +..+.+...+ ++.++..+ ...|...++..|++.
T Consensus 24 ~G~pli~~~~~~l~~------------~-~vvvv~~~--~---~~~~~~~~~~---~~~~v~d~~~~~G~~~si~~gl~~ 82 (208)
T 3ngw_A 24 CGKKLIEWVLEKYSP------------F-QTVFVCRD--E---KQAEKLSSRY---EAEFIWDLHKGVGSIAGIHAALRH 82 (208)
T ss_dssp TTEEHHHHHHHHHTT------------S-EEEEECSS--H---HHHHHHHTTS---CSCEECCTTCCCSHHHHHHHHHHH
T ss_pred CCeeHHHHHHHHhcC------------C-CEEEEECC--H---HHHHHHHHhc---CCeEEecCCCCCChHHHHHHHHHH
Confidence 555556666655533 1 88888742 2 2233443333 34555443 335777999999999
Q ss_pred cCCCEEEEEeCCCC-CCcchHHHHHHHHHH
Q 019818 155 SRGELLLMLDADGA-TKVTDLEKLESQIHA 183 (335)
Q Consensus 155 a~~d~v~~~DaD~~-~~~~~l~~l~~~~~~ 183 (335)
+ .+++ ++++|.. ++++.+.++++.+.+
T Consensus 83 ~-~~~v-v~~~D~P~i~~~~i~~l~~~~~~ 110 (208)
T 3ngw_A 83 F-GSCV-VAAIDMPFVKPEVLEHLYKEGEK 110 (208)
T ss_dssp H-SSEE-EEETTCTTCCHHHHHHHHHHHHH
T ss_pred c-CCCE-EEECCccCCCHHHHHHHHHHhhc
Confidence 9 8999 9999995 589999999998865
|
| >1vgw_A 4-diphosphocytidyl-2C-methyl-D-erythritol synthas; structural genomics, transferase; 2.35A {Neisseria gonorrhoeae} SCOP: c.68.1.13 PDB: 1vgz_A | Back alignment and structure |
|---|
Probab=88.33 E-value=1.7 Score=36.25 Aligned_cols=92 Identities=12% Similarity=0.057 Sum_probs=57.5
Q ss_pred CCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCcchHHHHHHHHHHcCCCcEEEEEcCCCCChHHHHHHHHHhc
Q 019818 76 NEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNHGKGEAIRKGMLHS 155 (335)
Q Consensus 76 ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~vi~~~~~~Gk~~aln~g~~~a 155 (335)
++...|..+++.+.. ....-+|+|+.+...+...+ +. .+....+.++ ++..|...++..|+...
T Consensus 32 ~gkpli~~~l~~l~~---------~~~~~~ivvv~~~~~~~~~~-~~----~~~~~~i~~~--~~~~~~~~si~~~l~~~ 95 (231)
T 1vgw_A 32 GSKTVLEHVLGIFER---------HEAVDLTVVVVSPEDTFADK-VQ----TAFPQVRVWK--NGGQTRAETVRNGVAKL 95 (231)
T ss_dssp TTEEHHHHHHHHHHT---------CTTCCEEEEECCTTCSTHHH-HH----HHCTTSEEEC--CCCSSHHHHHHHHHHHH
T ss_pred CCeEHHHHHHHHHHc---------CCCCCeEEEEECccHHHHHH-HH----hcCCCceEEE--cCCCcHHHHHHHHHHHH
Confidence 444556666665543 22235777776543332222 22 2211146554 34568888888888776
Q ss_pred -------CCCEEEEEeCCCC-CCcchHHHHHHHHHH
Q 019818 156 -------RGELLLMLDADGA-TKVTDLEKLESQIHA 183 (335)
Q Consensus 156 -------~~d~v~~~DaD~~-~~~~~l~~l~~~~~~ 183 (335)
..+.++++++|.. ++++.+.++++.+.+
T Consensus 96 ~~~~~~~~~~~vlv~~~D~p~~~~~~i~~l~~~~~~ 131 (231)
T 1vgw_A 96 LETGLAAETDNILVHDAARCCLPSEALARLIEQAGN 131 (231)
T ss_dssp HHHSSSCTTSEEEECCTTCTTCCHHHHHHHHHHHTT
T ss_pred hhhccCCCCCEEEEEcCCcccCCHHHHHHHHHHHhh
Confidence 4699999999985 588889999988754
|
| >4fce_A Bifunctional protein GLMU; GLMU. csgid, niaid, structural genomics, national institute allergy and infectious diseases; HET: GP1; 1.96A {Yersinia pseudotuberculosis} PDB: 3fww_A 1hv9_A* 2oi5_A* 2oi6_A* 2oi7_A* 1fxj_A* 1fwy_A* | Back alignment and structure |
|---|
Probab=87.40 E-value=1.5 Score=40.73 Aligned_cols=90 Identities=17% Similarity=0.220 Sum_probs=59.4
Q ss_pred CCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCcchHHHHHHHHHHcCCCcEEEEEcCCCCChHHHHHHHHHhcC
Q 019818 77 EEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNHGKGEAIRKGMLHSR 156 (335)
Q Consensus 77 e~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~vi~~~~~~Gk~~aln~g~~~a~ 156 (335)
....|..+++.+.+. . --+|+++..... +.+++..... ++.++..+...|.+.++..|++...
T Consensus 35 g~pli~~~l~~l~~~---------~-~~~i~vv~~~~~----~~i~~~~~~~---~~~~v~~~~~~g~~~~i~~~~~~~~ 97 (459)
T 4fce_A 35 GKPMVQHVIDAAMKL---------G-AQHVHLVYGHGG----ELLKKTLADP---SLNWVLQAEQLGTGHAMQQAAPHFA 97 (459)
T ss_dssp TEEHHHHHHHHHHHH---------T-CSCEEEEESSCH----HHHHHHC--------CEEECSSCCCHHHHHHHHGGGSC
T ss_pred CeeHHHHHHHHHHhC---------C-CCcEEEEeCCCH----HHHHHHhccC---CcEEEeCCCCCCcHHHHHHHHHhcC
Confidence 345666666666552 1 346777765332 2223322222 4677776777899999999999886
Q ss_pred C-CEEEEEeCCC-CCCcchHHHHHHHHHH
Q 019818 157 G-ELLLMLDADG-ATKVTDLEKLESQIHA 183 (335)
Q Consensus 157 ~-d~v~~~DaD~-~~~~~~l~~l~~~~~~ 183 (335)
. +.++++++|. .+.++.+.++++.+.+
T Consensus 98 ~~~~~lv~~~D~P~i~~~~i~~l~~~~~~ 126 (459)
T 4fce_A 98 DDEDILMLYGDVPLISVDTLQRLLAAKPE 126 (459)
T ss_dssp TTSEEEEEETTCTTCCHHHHHHHHHHCCT
T ss_pred CCCcEEEEeCCcccCCHHHHHHHHHHHhh
Confidence 4 9999999999 4788889999887643
|
| >2y6p_A 3-deoxy-manno-octulosonate cytidylyltransferase; lipid A; HET: CTP; 2.10A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=86.99 E-value=5.8 Score=32.86 Aligned_cols=86 Identities=9% Similarity=0.131 Sum_probs=53.3
Q ss_pred CCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCcchHHHHHHHHHHcCCCcEEEEEcCC--CCChHHHHHHHHHh
Q 019818 77 EEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGR--NHGKGEAIRKGMLH 154 (335)
Q Consensus 77 e~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~vi~~~~--~~Gk~~aln~g~~~ 154 (335)
....|..+++.+.+ . --+|+|+.+. + .+.+...++ +.++..++ ..|.++++ .|++.
T Consensus 26 g~pli~~~l~~~~~---------~--~~~i~v~~~~--~----~i~~~~~~~----~~~~~~~~~~~~g~~~~~-~~~~~ 83 (234)
T 2y6p_A 26 GKPLIRWVVEGLVK---------T--GERVILATDS--E----RVKEVVEDL----CEVFLTPSDLPSGSDRVL-YVVRD 83 (234)
T ss_dssp TEEHHHHHHHHHHT---------T--TSCEEEEESC--H----HHHHHHTTT----SEEEECCTTCCSHHHHHH-HHHTT
T ss_pred CEEHHHHHHHHHHH---------h--CCEEEEECCh--H----HHHHHHHhc----eEEEECCcccccchHHHH-HHHHh
Confidence 33556666666544 2 2467777653 2 223332222 23444322 45666655 57777
Q ss_pred cCCCEEEEEeCCC-CCCcchHHHHHHHHHHh
Q 019818 155 SRGELLLMLDADG-ATKVTDLEKLESQIHAV 184 (335)
Q Consensus 155 a~~d~v~~~DaD~-~~~~~~l~~l~~~~~~~ 184 (335)
...|.++++++|. ..+++.+.++++.+.+.
T Consensus 84 ~~~~~vlv~~~D~P~~~~~~i~~l~~~~~~~ 114 (234)
T 2y6p_A 84 LDVDLIINYQGDEPFVYEEDIKLIFRELEKG 114 (234)
T ss_dssp CCCSEEEECCTTCCCCCHHHHHHHHHHHHHT
T ss_pred CCCCEEEEecCCcCcCCHHHHHHHHHHHHhC
Confidence 7789999999999 67889999999988654
|
| >3juk_A UDP-glucose pyrophosphorylase (GALU); transfer; HET: UPG; 2.30A {Helicobacter pylori} PDB: 3juj_A* | Back alignment and structure |
|---|
Probab=86.82 E-value=0.94 Score=39.28 Aligned_cols=53 Identities=19% Similarity=0.135 Sum_probs=43.9
Q ss_pred cEEEEEcCCCCChHHHHHHHHHhcCCCEEEEEeCCCCCCcc----hHHHHHHHHHHh
Q 019818 132 NVRIILLGRNHGKGEAIRKGMLHSRGELLLMLDADGATKVT----DLEKLESQIHAV 184 (335)
Q Consensus 132 ~i~vi~~~~~~Gk~~aln~g~~~a~~d~v~~~DaD~~~~~~----~l~~l~~~~~~~ 184 (335)
.+.++..+...|-+.++..|+.....+.++++.+|....++ .+.++++.+.+.
T Consensus 96 ~i~~~~~~~~~Gt~~al~~a~~~l~~~~~lv~~~D~~~~~~~~~~~l~~l~~~~~~~ 152 (281)
T 3juk_A 96 CFSYVRQKQMKGLGHAILTGEALIGNEPFAVILADDLCISHDHPSVLKQMTSLYQKY 152 (281)
T ss_dssp EEEEEECSSCCCHHHHHHHTHHHHCSSCEEEECTTEEEECTTSCCHHHHHHHHHHHH
T ss_pred cEEEEecCCCCCcHHHHHHHHHHcCCCCEEEEeCCeeccCccchHHHHHHHHHHHHc
Confidence 56667666678999999999988877889999999987777 799999988664
|
| >2qh5_A PMI, ALGA, mannose-6-phosphate isomerase; structural genomics, PSI, protein structure initi nysgrc; 2.30A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=86.35 E-value=4.9 Score=35.26 Aligned_cols=96 Identities=16% Similarity=0.211 Sum_probs=61.5
Q ss_pred EEeccCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCcchHHHHHHHHHH-cCCCcEEEEEcCCCCChHHHHH
Q 019818 71 IIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRK-YTVDNVRIILLGRNHGKGEAIR 149 (335)
Q Consensus 71 iip~~ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~-~~~~~i~vi~~~~~~Gk~~aln 149 (335)
++|+.+....|..+++.+.+ . --+|+|+.+.. ..+.+.+.... +...++.++..+...|-+.++.
T Consensus 30 ll~i~gg~pli~~~l~~l~~---------~--~~~i~vv~~~~---~~~~i~~~~~~~~~~~~~~~i~~~~~~gt~~al~ 95 (308)
T 2qh5_A 30 FLKLFDHKSLFELSFKRNAS---------L--VDETLIVCNEK---HYFLALEEIKNEIKNKSVGFLLESLSKNTANAIA 95 (308)
T ss_dssp GCTTBTTBCHHHHHHHHHHT---------T--CSEEEEEEEGG---GHHHHHHHTTTTCSSCEEEEEEESSCCCHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHc---------c--CCCEEEEEChh---HHHHHHHHHHHhhCCCccEEEeCCCCCChHHHHH
Confidence 45554455666667666654 2 34777766421 22233333333 3211456666666789999999
Q ss_pred HHHHhcC-CCEEEEEeCCCCC-CcchHHHHHHH
Q 019818 150 KGMLHSR-GELLLMLDADGAT-KVTDLEKLESQ 180 (335)
Q Consensus 150 ~g~~~a~-~d~v~~~DaD~~~-~~~~l~~l~~~ 180 (335)
.+..... .++++++.+|... +++.+.++++.
T Consensus 96 ~a~~~l~~~~~~lv~~~D~~~~~~~~~~~~~~~ 128 (308)
T 2qh5_A 96 LSALMSDKEDLLIVTPSDHLIKDLQAYENAIKK 128 (308)
T ss_dssp HHHHTSCTTSEEEEEESSCBCCCHHHHHHHHHH
T ss_pred HHHHHhCCCCeEEEEcCCccccCHHHHHHHHHH
Confidence 8888775 4689999999987 67778888876
|
| >2yc3_A 2-C-methyl-D-erythritol 4-phosphate cytidylyltran chloroplastic; transferase, non-mevalonate-pathway, herbicide, allosteric P; HET: MW5; 1.40A {Arabidopsis thaliana} PDB: 2yc5_A* 1w77_A* 2ycm_A* | Back alignment and structure |
|---|
Probab=86.20 E-value=5.4 Score=32.97 Aligned_cols=93 Identities=12% Similarity=0.129 Sum_probs=58.1
Q ss_pred CCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCcchHHHHHHHHHHcCCCcEEEEEcCCCCChHHHHHHHHHhcC
Q 019818 77 EEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNHGKGEAIRKGMLHSR 156 (335)
Q Consensus 77 e~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~vi~~~~~~Gk~~aln~g~~~a~ 156 (335)
....|..+++.+.+ ...--+|+|+.+.. ..++.+.+...+. .++.++. ...|...++..|++...
T Consensus 31 g~pli~~~l~~l~~---------~~~~~~ivvv~~~~---~~~~~~~~~~~~~-~~v~~~~--~~~~~~~sv~~al~~~~ 95 (228)
T 2yc3_A 31 GQPIALYSFFTFSR---------MPEVKEIVVVCDPF---FRDIFEEYEESID-VDLSFAI--PGKERQDSVYSGLQEID 95 (228)
T ss_dssp TEEHHHHHHHHHHH---------CTTEEEEEEECCGG---GHHHHHTTTTTSS-SEEEEEC--CCSSHHHHHHHHHTTSC
T ss_pred CEEHHHHHHHHHHc---------CCCCCeEEEEEChH---HHHHHHHHHHhCC-CcEEEEC--CCCCHHHHHHHHHHhhc
Confidence 34555556665544 21235777776522 2233333333332 1455543 23688889999998765
Q ss_pred --CCEEEEEeCCC-CCCcchHHHHHHHHHHh
Q 019818 157 --GELLLMLDADG-ATKVTDLEKLESQIHAV 184 (335)
Q Consensus 157 --~d~v~~~DaD~-~~~~~~l~~l~~~~~~~ 184 (335)
.++++++|+|. .++++.+..+++.+.+.
T Consensus 96 ~~~~~vl~~d~d~P~~~~~~i~~l~~~~~~~ 126 (228)
T 2yc3_A 96 VNSELVCIHDSARPLVNTEDVEKVLKDGSAV 126 (228)
T ss_dssp TTCSEEEEEETTCTTCCHHHHHHHHHHHHHH
T ss_pred cCCCEEEEecCCCccCCHHHHHHHHHHHHhc
Confidence 48999999997 56888999999887654
|
| >1e5k_A Molybdopterin-guanine dinucleotide biosynthesis protein A; molybdopterin nucleotidyl-transferase,; HET: CIT; 1.35A {Escherichia coli} SCOP: c.68.1.8 PDB: 1h4e_A* 1hjl_A* 1hjj_A* 1h4c_A* 1h4d_A* 1fr9_A 1frw_A* | Back alignment and structure |
|---|
Probab=86.12 E-value=1.8 Score=35.52 Aligned_cols=83 Identities=14% Similarity=0.097 Sum_probs=55.4
Q ss_pred CCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCcchHHHHHHHHHHcCCCcEEEEEcCC-C-CChHHHHHHHHH
Q 019818 76 NEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGR-N-HGKGEAIRKGML 153 (335)
Q Consensus 76 ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~vi~~~~-~-~Gk~~aln~g~~ 153 (335)
+....|..+++.+... .-+|+|+.+... .+ .. .. ++.++..+. . .|...++..|++
T Consensus 31 ~G~pli~~~l~~l~~~-----------~~~ivvv~~~~~---~~-~~----~~---~~~~v~~~~~~~~G~~~si~~~l~ 88 (201)
T 1e5k_A 31 NGKPLWQHVADALMTQ-----------LSHVVVNANRHQ---EI-YQ----AS---GLKVIEDSLADYPGPLAGMLSVMQ 88 (201)
T ss_dssp TTEEHHHHHHHHHHHH-----------CSCEEEECSSSH---HH-HH----TT---SCCEECCCTTCCCSHHHHHHHHHH
T ss_pred CceeHHHHHHHHHHhh-----------CCEEEEEcCCcH---HH-Hh----hc---CCeEEecCCCCCCCHHHHHHHHHH
Confidence 3445666666666531 246777754321 11 11 11 455665542 2 688999999999
Q ss_pred hcCCCEEEEEeCCC-CCCcchHHHHHHH
Q 019818 154 HSRGELLLMLDADG-ATKVTDLEKLESQ 180 (335)
Q Consensus 154 ~a~~d~v~~~DaD~-~~~~~~l~~l~~~ 180 (335)
....++++++++|. .++++.+..+++.
T Consensus 89 ~~~~~~vlv~~~D~P~i~~~~i~~l~~~ 116 (201)
T 1e5k_A 89 QEAGEWFLFCPCDTPYIPPDLAARLNHQ 116 (201)
T ss_dssp HCCSSEEEEEETTCTTCCTTHHHHHHHT
T ss_pred hCCCCcEEEEeCCcCcCCHHHHHHHHhh
Confidence 98889999999999 4688888888875
|
| >4ecm_A Glucose-1-phosphate thymidylyltransferase; HET: DAU; 2.30A {Bacillus anthracis} PDB: 3hl3_A* | Back alignment and structure |
|---|
Probab=85.80 E-value=3 Score=35.79 Aligned_cols=78 Identities=9% Similarity=0.090 Sum_probs=51.6
Q ss_pred ceEEEEEECCCCcchHHHHHHHHH--HcCCCcEEEEEcCCCCChHHHHHHHHHhcCCCEEEEEeCCCCCCcchHHHHHHH
Q 019818 103 TYEVLIIDDGSSDGTKRVAFDFVR--KYTVDNVRIILLGRNHGKGEAIRKGMLHSRGELLLMLDADGATKVTDLEKLESQ 180 (335)
Q Consensus 103 ~~eiivvdd~s~d~t~~~~~~~~~--~~~~~~i~vi~~~~~~Gk~~aln~g~~~a~~d~v~~~DaD~~~~~~~l~~l~~~ 180 (335)
--+|+|+.+... ..++.+.+.. .++ .++.++..+...|-+.++..|+.....+.++++.+|.... ..+.++++.
T Consensus 70 ~~~iivv~~~~~--~~~~~~~~~~~~~~~-~~i~~~~~~~~~G~~~al~~a~~~~~~~~~lv~~~D~~~~-~~l~~l~~~ 145 (269)
T 4ecm_A 70 ITDIMIITGKEH--MGDVVSFLGSGQEFG-VSFTYRVQDKAGGIAQALGLCEDFVGNDRMVVILGDNIFS-DDIRPYVEE 145 (269)
T ss_dssp CCEEEEEECTTT--HHHHHHHHTTSGGGT-CEEEEEECSSCCCHHHHHHTTHHHHTTSEEEEEETTEEES-SCSHHHHHH
T ss_pred CCEEEEECChhh--HHHHHHHHhhccccC-ceEEEeeCCccCcHHHHHHHHHHhcCCCcEEEEeCCccCc-cCHHHHHHH
Confidence 457888776422 1222222221 121 2466666666789999999998887788999999999765 678888887
Q ss_pred HHHh
Q 019818 181 IHAV 184 (335)
Q Consensus 181 ~~~~ 184 (335)
+.+.
T Consensus 146 ~~~~ 149 (269)
T 4ecm_A 146 FTNQ 149 (269)
T ss_dssp HHTS
T ss_pred HHhc
Confidence 7653
|
| >3pnn_A Conserved domain protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; HET: MSE GOL; 1.90A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=85.52 E-value=2.1 Score=37.69 Aligned_cols=99 Identities=12% Similarity=0.099 Sum_probs=63.7
Q ss_pred EEecc-CCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCC-cchHHHHHHHHHHcC-CCcEEEEEcC--------
Q 019818 71 IIPAF-NEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSS-DGTKRVAFDFVRKYT-VDNVRIILLG-------- 139 (335)
Q Consensus 71 iip~~-ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~-d~t~~~~~~~~~~~~-~~~i~vi~~~-------- 139 (335)
++|+- +....|..+++.+.+. .--+|+||..... +...+.+. ...+ ..++.++..+
T Consensus 25 l~~ig~~g~pli~~~l~~~~~~----------~~~~i~vv~~~~~~~~~~~~~~---~~~~~~~~i~~~~~~~~~~~~~~ 91 (303)
T 3pnn_A 25 LDGIGPGGDTIMDYSVYDAIRA----------GFGRLVFVIRHSFEKEFREKIL---TKYEGRIPVELVFQELDRLPEGF 91 (303)
T ss_dssp CCCCSTTSCCHHHHHHHHHHHH----------TCCEEEEEECGGGHHHHHHHTH---HHHTTTSCEEEEECCTTCCCTTC
T ss_pred EeEcCCCCeeHHHHHHHHHHHC----------CCCeEEEEcCchHHHHHHHHHH---HHhccCCcEEEEecccccccccc
Confidence 45653 4456777777777652 1357888776332 22222222 2222 1257776655
Q ss_pred -------CCCChHHHHHHHHHhcCCCEEEEEeCCCCCCcchHHHHHHHHHH
Q 019818 140 -------RNHGKGEAIRKGMLHSRGELLLMLDADGATKVTDLEKLESQIHA 183 (335)
Q Consensus 140 -------~~~Gk~~aln~g~~~a~~d~v~~~DaD~~~~~~~l~~l~~~~~~ 183 (335)
+..|-+.|+..+......+ ++++.+|...+++.+..+++...+
T Consensus 92 ~~~~~~~~~~Gt~~al~~a~~~i~~~-~lV~~gD~l~~~~~~~~l~~~~~~ 141 (303)
T 3pnn_A 92 SCPEGREKPWGTNHAVLMGRDAIREP-FAVINADDFYGRNGFEVLARKLMT 141 (303)
T ss_dssp CCCTTCCSCCCHHHHHHTTTTTCCSC-EEEEESSCBCCHHHHHHHHHHHHT
T ss_pred cccccccccCCcHHHHHHHHHhcCCC-EEEEECCeecCHHHHHHHHHHHHH
Confidence 4679999999998887544 566789998888889999988765
|
| >3f1c_A Putative 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 2; structural genomics, PSI-2, protein structure initiative; 2.30A {Listeria monocytogenes str} SCOP: c.68.1.0 | Back alignment and structure |
|---|
Probab=85.38 E-value=11 Score=31.78 Aligned_cols=95 Identities=16% Similarity=0.139 Sum_probs=60.2
Q ss_pred CCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCcchHHHHHHHHHHcC-CCcEEEEEcCCCCChHHHHHHHHHh
Q 019818 76 NEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYT-VDNVRIILLGRNHGKGEAIRKGMLH 154 (335)
Q Consensus 76 ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~-~~~i~vi~~~~~~Gk~~aln~g~~~ 154 (335)
+....|..+++.+.+ ....-+|+||.+... .+.+++..+.+. ...+.++.. ..|...++..|+..
T Consensus 30 ~Gkpll~~~l~~~~~---------~~~~~~ivvv~~~~~---~~~~~~~~~~~~~~~~~~~~~~--~~~~~~sv~~al~~ 95 (246)
T 3f1c_A 30 NGKPIIVHTVEKFIL---------NTRFDKILISSPKEW---MNHAEDNIKKYISDDRIVVIEG--GEDRNETIMNGIRF 95 (246)
T ss_dssp TTEEHHHHHHHHHHT---------CTTCSEEEEEECGGG---HHHHHHHHHHHCCCTTEEEEEC--CSSHHHHHHHHHHH
T ss_pred CCeeHHHHHHHHHHc---------CCCCCEEEEEeCHHH---HHHHHHHHHHhCCCCCEEEECC--CCchHHHHHHHHHH
Confidence 344666666666654 222457887775322 222333333332 124666543 34677788888876
Q ss_pred cC-------CCEEEEEeCCC-CCCcchHHHHHHHHHHh
Q 019818 155 SR-------GELLLMLDADG-ATKVTDLEKLESQIHAV 184 (335)
Q Consensus 155 a~-------~d~v~~~DaD~-~~~~~~l~~l~~~~~~~ 184 (335)
.. .++|+++|+|. .++++.+.++++.+.+.
T Consensus 96 l~~~~~~~~~~~vlv~~~d~Pli~~~~i~~li~~~~~~ 133 (246)
T 3f1c_A 96 VEKTYGLTDDDIIVTHDAVRPFLTHRIIEENIDAALET 133 (246)
T ss_dssp HHHHTCCCTTCEEEEEETTCTTCCHHHHHHHHHHHHHT
T ss_pred HhhhhcCCCCCEEEEecCcccCCCHHHHHHHHHHHHhc
Confidence 53 58999999998 46899999999988764
|
| >1vic_A 3-deoxy-manno-octulosonate cytidylyltransferase; structural genomics; 1.80A {Haemophilus influenzae} SCOP: c.68.1.13 PDB: 1vh3_A 3duv_A* | Back alignment and structure |
|---|
Probab=83.99 E-value=9.4 Score=32.39 Aligned_cols=89 Identities=10% Similarity=0.249 Sum_probs=53.5
Q ss_pred CCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCcchHHHHHHHHHHcCCCcEEEEEcC-C-CCChHHHHHHHHH
Q 019818 76 NEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLG-R-NHGKGEAIRKGML 153 (335)
Q Consensus 76 ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~vi~~~-~-~~Gk~~aln~g~~ 153 (335)
+....|..+++.+.+ ... -+|+|+.+. +. +.+...++ ++.++..+ . ..|.+ .+..++.
T Consensus 25 ~gkpli~~~l~~l~~---------~~~-~~ivvv~~~--~~----i~~~~~~~---~~~~~~~~~~~~~g~~-~~~~~~~ 84 (262)
T 1vic_A 25 KGKPMIQHVFEKALQ---------SGA-SRVIIATDN--EN----VADVAKSF---GAEVCMTSVNHNSGTE-RLAEVVE 84 (262)
T ss_dssp TTEEHHHHHHHHHHH---------TTC-SEEEEEESC--HH----HHHHHHHT---TCEEEECCCSSCCHHH-HHHHHHH
T ss_pred CCeEHHHHHHHHHHh---------CCC-ceEEEECCc--HH----HHHHHHhc---CCEEEECCccccCChH-HHHHHHH
Confidence 344666666666655 222 578888752 22 23333333 35666553 2 23443 3334443
Q ss_pred hc---CCCEEEEEeCCCC-CCcchHHHHHHHHHHh
Q 019818 154 HS---RGELLLMLDADGA-TKVTDLEKLESQIHAV 184 (335)
Q Consensus 154 ~a---~~d~v~~~DaD~~-~~~~~l~~l~~~~~~~ 184 (335)
.. ..+.++++++|.. ++++.+.++++.+.+.
T Consensus 85 ~l~~~~~~~vlv~~~D~P~i~~~~i~~l~~~~~~~ 119 (262)
T 1vic_A 85 KLAIPDNEIIVNIQGDEPLIPPVIVRQVADNLAKF 119 (262)
T ss_dssp HTTCCTTCEEEECCTTCTTCCHHHHHHHHHHHHHH
T ss_pred HhccCCCCEEEEEeCCcCccCHHHHHHHHHHHHhc
Confidence 33 4699999999995 6889999999988654
|
| >3q80_A 2-C-methyl-D-erythritol 4-phosphate cytidyltransf; TB structural genomics consortium, TBSGC, rossman fold; HET: CDM; 2.00A {Mycobacterium tuberculosis} SCOP: c.68.1.0 PDB: 3q7u_A* 3okr_A 2xwn_A* | Back alignment and structure |
|---|
Probab=83.96 E-value=8.8 Score=32.18 Aligned_cols=90 Identities=13% Similarity=0.166 Sum_probs=58.9
Q ss_pred CCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCcchHHHHHHHHHHcCCCcEEEEEcCCCCChHHHHHHHHHhc
Q 019818 76 NEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNHGKGEAIRKGMLHS 155 (335)
Q Consensus 76 ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~vi~~~~~~Gk~~aln~g~~~a 155 (335)
+....|..+++.+.+ ...--+|+|+.+... .+.+++.... .+.++.. ..+...++..|++..
T Consensus 33 ~Gkpll~~~l~~~~~---------~~~~~~ivVv~~~~~---~~~~~~~~~~----~v~~v~g--g~~r~~sv~~gl~~~ 94 (231)
T 3q80_A 33 DGQTLIERAVDGLLD---------SGVVDTVVVAVPADR---TDEARQILGH----RAMIVAG--GSNRTDTVNLALTVL 94 (231)
T ss_dssp TTEEHHHHHHHHHHH---------TSCCCEEEEEECGGG---HHHHHHHHGG----GCEEEEC--CSSHHHHHHHHHGGG
T ss_pred CCeEHHHHHHHHHHh---------CCCCCeEEEECChHH---HHHHHHHhcC----CeEEEcC--CCchHHHHHHHHHHh
Confidence 455666777776655 222357888876322 2233333322 3555542 234677888999887
Q ss_pred C----CCEEEEEeCCCC-CCcchHHHHHHHHHH
Q 019818 156 R----GELLLMLDADGA-TKVTDLEKLESQIHA 183 (335)
Q Consensus 156 ~----~d~v~~~DaD~~-~~~~~l~~l~~~~~~ 183 (335)
. .+++++.|+|.. ++++.+.++++.+.+
T Consensus 95 ~~~~~~d~Vlv~~~d~Pli~~~~i~~li~~~~~ 127 (231)
T 3q80_A 95 SGTAEPEFVLVHDAARALTPPALVARVVEALRD 127 (231)
T ss_dssp C---CCSEEEECCTTCTTCCHHHHHHHHHHHHT
T ss_pred hhcCCCCEEEEEcCCcCCCCHHHHHHHHHHHhh
Confidence 5 489999999985 589999999998865
|
| >3d5n_A Q97W15_sulso; NESG, SSR125, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.80A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=83.83 E-value=0.73 Score=37.77 Aligned_cols=49 Identities=16% Similarity=0.276 Sum_probs=38.6
Q ss_pred cEEEEEcCC-CCChHHHHHHHHHhcCC-CEEEEEeCCCC-CCcchHHHHHHHH
Q 019818 132 NVRIILLGR-NHGKGEAIRKGMLHSRG-ELLLMLDADGA-TKVTDLEKLESQI 181 (335)
Q Consensus 132 ~i~vi~~~~-~~Gk~~aln~g~~~a~~-d~v~~~DaD~~-~~~~~l~~l~~~~ 181 (335)
++ ++..+. ..|-..++..|++.... +.++++++|.. ++++.+.++++.+
T Consensus 61 ~~-~v~~~~~~~G~~~si~~al~~~~~~~~vlv~~~D~P~i~~~~i~~l~~~~ 112 (197)
T 3d5n_A 61 QI-VIYNPFWNEGISTSLKLGLRFFKDYDAVLVALGDMPFVTKEDVNKIINTF 112 (197)
T ss_dssp SC-EEECTTGGGCHHHHHHHHHHHTTTSSEEEEEETTCCCSCHHHHHHHHHTC
T ss_pred CE-EEECCCCCCCHHHHHHHHHHhhccCCcEEEEeCCccccCHHHHHHHHHHh
Confidence 45 555443 36888899999998865 89999999995 5888898888765
|
| >2ux8_A Glucose-1-phosphate uridylyltransferase; UGPG, GALU pyrophosphorylase, nucleotidyltransferase; HET: G1P; 2.65A {Sphingomonas elodea} | Back alignment and structure |
|---|
Probab=83.08 E-value=2.4 Score=36.96 Aligned_cols=53 Identities=17% Similarity=0.086 Sum_probs=43.7
Q ss_pred cEEEEEcCCCCChHHHHHHHHHhcCCCEEEEEeCCCCCC--cchHHHHHHHHHHh
Q 019818 132 NVRIILLGRNHGKGEAIRKGMLHSRGELLLMLDADGATK--VTDLEKLESQIHAV 184 (335)
Q Consensus 132 ~i~vi~~~~~~Gk~~aln~g~~~a~~d~v~~~DaD~~~~--~~~l~~l~~~~~~~ 184 (335)
++.++..+...|-+.++..|......+.++++.+|.... +..+..+++...+.
T Consensus 107 ~i~~~~~~~~~Gt~~al~~a~~~~~~~~~lv~~~D~~~~~~~~~l~~l~~~~~~~ 161 (297)
T 2ux8_A 107 NIAYVRQQEPMGLGHAVWCARDIVGDEPFAVLLPDDFMFGQPGCLKQMVDAYNKV 161 (297)
T ss_dssp SEEEEECCSCCCHHHHHHTTHHHHCSSCEEEECTTEEEESSSCHHHHHHHHHHHH
T ss_pred ceEEEeCCCCCChHHHHHHHHHHcCCCcEEEEeCCeecCCChHHHHHHHHHHHhc
Confidence 577777666789999999998877678899999999887 68899999887654
|
| >2xwl_A 2-C-methyl-D-erythritol 4-phosphate cytidylyltran; transferase, MEP pathway; HET: CTP; 1.49A {Mycobacterium smegmatis} PDB: 2xwm_A* | Back alignment and structure |
|---|
Probab=82.76 E-value=11 Score=30.84 Aligned_cols=88 Identities=14% Similarity=0.061 Sum_probs=57.4
Q ss_pred CCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCcchHHHHHHHHHHcCCCcEEEEEcCCCCChHHHHHHHHHhc-
Q 019818 77 EEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNHGKGEAIRKGMLHS- 155 (335)
Q Consensus 77 e~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~vi~~~~~~Gk~~aln~g~~~a- 155 (335)
....|..+++.+.+. ...-+|+|+.+... .+.+++... .. ++.++.. ..+...++..|++..
T Consensus 29 g~pli~~~l~~l~~~---------~~~~~i~vv~~~~~---~~~~~~~~~-~~--~v~~~~~--~~~~~~~i~~al~~~~ 91 (223)
T 2xwl_A 29 GTPLLEHALSGLRAS---------GVIDRIVIAVPPAL---TDESKLVFG-GE--DSVIVSG--GVDRTESVALALEAAG 91 (223)
T ss_dssp TEEHHHHHHHHHHHH---------SCCSEEEEEECGGG---HHHHHHHTC-BT--TEEEEEC--CSSHHHHHHHHHTTCT
T ss_pred CeEHHHHHHHHHhcC---------CCCCeEEEEEcccH---HHHHHHHhc-cC--CeEEEcC--CCCHHHHHHHHHHhcC
Confidence 445666677666552 11247777765322 222333221 12 5666553 356788899999888
Q ss_pred CCCEEEEEeCCCC-CCcchHHHHHHHH
Q 019818 156 RGELLLMLDADGA-TKVTDLEKLESQI 181 (335)
Q Consensus 156 ~~d~v~~~DaD~~-~~~~~l~~l~~~~ 181 (335)
..+.++++++|.. ++++.+.++++.+
T Consensus 92 ~~~~vlv~~~D~P~~~~~~i~~l~~~~ 118 (223)
T 2xwl_A 92 DAEFVLVHDAARALTPPALIARVVAAL 118 (223)
T ss_dssp TCSEEEECCTTCTTCCHHHHHHHHHHH
T ss_pred CCCEEEEEcCCcccCCHHHHHHHHHHH
Confidence 6799999999995 6888999999887
|
| >2vsh_A TARI, 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; nucleotidyltransferase; HET: 1PE PG4 P6G; 2.00A {Streptococcus pneumoniae} PDB: 2vsi_A* | Back alignment and structure |
|---|
Probab=82.69 E-value=5.1 Score=33.21 Aligned_cols=95 Identities=11% Similarity=0.090 Sum_probs=56.5
Q ss_pred CCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCcchHHHHHHHHHHcC--C-CcEEEEEcCCCCChHHHHHHHH
Q 019818 76 NEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYT--V-DNVRIILLGRNHGKGEAIRKGM 152 (335)
Q Consensus 76 ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~--~-~~i~vi~~~~~~Gk~~aln~g~ 152 (335)
+....|..+++.+.+ ...--+|+|+.+... .+.+++....++ . .+..+.. ...|...++..|+
T Consensus 29 ~g~pli~~~l~~l~~---------~~~~~~i~vv~~~~~---~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~i~~~l 94 (236)
T 2vsh_A 29 GDRPILIHTIEKFVL---------EPSIEKIVVGVHGDW---VSHAEDLVDKYLPLYKERIIITK--GGADRNTSIKNII 94 (236)
T ss_dssp TTEEHHHHHHHHHHT---------CTTCCCEEEEECGGG---HHHHHHHHHHHCGGGGGGEEEEE--CCSSHHHHHHHHH
T ss_pred CCccHHHHHHHHHHc---------CCCCCeEEEEeCHHH---HHHHHHHHHhccccccCceEEEC--CCCchHHHHHHHH
Confidence 344566666666544 112347777765332 122333322222 0 0223222 2357788888888
Q ss_pred Hhc----C---CCEEEEEeCCC-CCCcchHHHHHHHHHHh
Q 019818 153 LHS----R---GELLLMLDADG-ATKVTDLEKLESQIHAV 184 (335)
Q Consensus 153 ~~a----~---~d~v~~~DaD~-~~~~~~l~~l~~~~~~~ 184 (335)
... . .++++++++|. .++++.+.++++.+.+.
T Consensus 95 ~~~~~~~~~~~~~~vlv~~~D~P~~~~~~i~~l~~~~~~~ 134 (236)
T 2vsh_A 95 EAIDAYRPLTPEDIVVTHDSVRPFITLRMIQDNIQLAQNH 134 (236)
T ss_dssp HHHHHHSCCCTTCEEEEEETTCTTCCHHHHHHHHHHHHHS
T ss_pred HHHHhhccCCCCCEEEEecCCcccCCHHHHHHHHHHHHhc
Confidence 876 3 48999999999 56888999999988654
|
| >2j0a_A Beta-1,3-N-acetylglucosaminyltransferase manic FR; glycosyltransferase, developmental protein, transmembrane, G apparatus, notch signaling; 1.8A {Mus musculus} PDB: 2j0b_A* | Back alignment and structure |
|---|
Probab=82.65 E-value=1.1 Score=39.28 Aligned_cols=112 Identities=14% Similarity=0.049 Sum_probs=63.2
Q ss_pred cCCCEEEEEeCCCCCCcchHHHHHHHHHHhccccccCCCcccccccccccCCCeeeeecchhhhhHhhhhhhhhHHHHHH
Q 019818 155 SRGELLLMLDADGATKVTDLEKLESQIHAVGRKEYNHGDSVTVDSTFRISDIPIAAFGSRAHLEEKALATRKWYRNFLMK 234 (335)
Q Consensus 155 a~~d~v~~~DaD~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~g~~~~~~~~~~~~~~~~~~~~~~ 234 (335)
...+++++.|+|+.+..+.|.+++..+.. .. .+.+|....... . . .......
T Consensus 92 ~~~~Wf~~~DDDtyv~~~nL~~~L~~~d~--~~--------------------~~YiG~~~~~~~--~--~--~~~~~~~ 143 (280)
T 2j0a_A 92 SGLRWFCHVDDDNYVNPKALLQLLKTFPQ--DR--------------------DVYVGKPSLNRP--I--H--ASELQSK 143 (280)
T ss_dssp HTCSEEEEEETTEEECHHHHHHHHTTSCT--TS--------------------CCEEECEEC------------------
T ss_pred CCCcEEEEeCCCcEEcHHHHHHHHHhCCC--CC--------------------CEEEEEeccCcc--c--c--ccccCcc
Confidence 47899999999999988888888876632 22 566776642110 0 0 0000000
Q ss_pred HHHHHHHHHhCCCCccCCCceeeeeHHHHHHhhhhhh---------hccccchHHHHHHhH-HcCCCEEEeeeEE
Q 019818 235 GFHLVVILTAGPGIRDTQCGFKMFTRAAARKLFTNIR---------LKRWCFDVELVYLCK-RFGIPIIEISVNW 299 (335)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~g~~~~~r~~l~~i~~~~~---------~~~~~~D~el~~r~~-~~G~~i~~~p~~~ 299 (335)
.. .......+...++| .+++|++++++..... ...+.+|..+..-+. ..|.+....+-.+
T Consensus 144 ~~----~~~~~~~y~~GGaG-~vlSr~~l~~l~~~~~~~~~~~~~~~~~~~dD~~lG~Cl~~~lGV~~~~~~~Fh 213 (280)
T 2j0a_A 144 QR----TKLVRFWFATGGAG-FCINRQLALKMVPWASGSHFVDTSALIRLPDDCTVGYIIECKLGGRLQPSPLFH 213 (280)
T ss_dssp -----------CCEECGGGC-EEEEHHHHHHHHHHHTTCTTSCCTTTTTSCHHHHHHHHHHHTTCCCEEECTTCC
T ss_pred cc----ccccccCcccCCCE-EEECHHHHHHHHHhhcccccccccccCCCCccHHHHHHHHhcCCCCceeccccc
Confidence 00 00011222223333 5999999999954221 122345999999888 8898877665433
|
| >2v0h_A Bifunctional protein GLMU; cell WALL, magnesium, cell shape, transferase, peptidoglycan synthesis, associative mechanism; 1.79A {Haemophilus influenzae} PDB: 2v0i_A* 2v0j_A* 2v0k_A* 2v0l_A* 2vd4_A* 2w0v_A* 2w0w_A* 3twd_A* | Back alignment and structure |
|---|
Probab=82.55 E-value=3.5 Score=38.19 Aligned_cols=89 Identities=15% Similarity=0.171 Sum_probs=58.9
Q ss_pred CCChHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCcchHHHHHHHHHHcCCCcEEEEEcCCCCChHHHHHHHHHhcC-
Q 019818 78 EHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNHGKGEAIRKGMLHSR- 156 (335)
Q Consensus 78 ~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~vi~~~~~~Gk~~aln~g~~~a~- 156 (335)
...|..+++.+.+ .. --+|+++.+... +.+++....+ ++.++..+...|.+.++..|++...
T Consensus 33 kpli~~~l~~l~~---------~~-~~~iivv~~~~~----~~i~~~~~~~---~~~~v~~~~~~g~~~~~~~~~~~~~~ 95 (456)
T 2v0h_A 33 KPMVKHVIDTAHQ---------LG-SENIHLIYGHGG----DLMRTHLANE---QVNWVLQTEQLGTAHAVQQAAPFFKD 95 (456)
T ss_dssp EEHHHHHHHHHHH---------TT-CSCEEEEECTTH----HHHHHHTTTC---CCEEEECSCCCCHHHHHHHHGGGCCT
T ss_pred ccHHHHHHHHHHh---------CC-CCcEEEEeCCCH----HHHHHHhhcC---CcEEEeCCCCCCcHHHHHHHHHhcCC
Confidence 3556666666654 11 346777765321 2233332222 3666666667789999999998875
Q ss_pred CCEEEEEeCCCC-CCcchHHHHHHHHHH
Q 019818 157 GELLLMLDADGA-TKVTDLEKLESQIHA 183 (335)
Q Consensus 157 ~d~v~~~DaD~~-~~~~~l~~l~~~~~~ 183 (335)
.+.++++++|.. +.++.+.++++.+.+
T Consensus 96 ~~~vlv~~~D~P~i~~~~i~~l~~~~~~ 123 (456)
T 2v0h_A 96 NENIVVLYGDAPLITKETLEKLIEAKPE 123 (456)
T ss_dssp TSEEEEEETTCTTCCHHHHHHHHHHCCT
T ss_pred CCeEEEEcCCcceeCHHHHHHHHHHHhc
Confidence 699999999995 688888888876643
|
| >3rsb_A Adenosylcobinamide-phosphate guanylyltransferase; pyrophosphorylase binding motif, pyrophosphorylase; HET: GTP; 2.80A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=81.65 E-value=0.79 Score=37.29 Aligned_cols=93 Identities=14% Similarity=0.111 Sum_probs=55.4
Q ss_pred CCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCcchHHHHHHHHHHcCC-CcEEEEEcCCCCChHHHHHHHHHh
Q 019818 76 NEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTV-DNVRIILLGRNHGKGEAIRKGMLH 154 (335)
Q Consensus 76 ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~-~~i~vi~~~~~~Gk~~aln~g~~~ 154 (335)
+....|..+++.+.+ .. --+|+|+.+...+...+.+.+ .++. .++.++.. ...|...++..|++.
T Consensus 25 ~g~pli~~~l~~l~~---------~~-~~~v~vv~~~~~~~i~~~~~~---~~~~~~~~~~~~~-~~~g~~~si~~al~~ 90 (196)
T 3rsb_A 25 CGRCLIDYVVSPLLK---------SK-VNNIFIATSPNTPKTKEYINS---AYKDYKNIVVIDT-SGKGYIEDLNECIGY 90 (196)
T ss_dssp TTEEHHHHHHHHHHS---------SS-CCCEEEECCTTCHHHHHHHHH---HTTTTTEEEE---------CCCCCTTTTT
T ss_pred CCEEHHHHHHHHHHH---------CC-CCEEEEEeCCChHHHHHHHHh---hccCCCCEEEEEC-CCCCcHHHHHHHHHh
Confidence 344566666666654 22 357888775444333333333 2221 14555543 345666677777777
Q ss_pred cCCCEEEEEeCCCC-CCcchHHHHHHHHHH
Q 019818 155 SRGELLLMLDADGA-TKVTDLEKLESQIHA 183 (335)
Q Consensus 155 a~~d~v~~~DaD~~-~~~~~l~~l~~~~~~ 183 (335)
. .+.++++++|.. ++++.+.++++.+.+
T Consensus 91 ~-~~~vlv~~~D~P~i~~~~i~~l~~~~~~ 119 (196)
T 3rsb_A 91 F-SEPFLVVSSDLINLKSKIINSIVDYFYC 119 (196)
T ss_dssp C-SSCEEEEETTEESCCHHHHHHHHHHHHH
T ss_pred C-CCCEEEEeCCcccCCHHHHHHHHHHHHh
Confidence 7 899999999995 699999999999875
|
| >2e8b_A Probable molybdopterin-guanine dinucleotide biosy protein A; putative protein, molybdenum cofactor, structural G NPPSFA; 1.61A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=80.83 E-value=8.8 Score=31.15 Aligned_cols=64 Identities=22% Similarity=0.303 Sum_probs=45.4
Q ss_pred ceEEEEEECCCCcchHHHHHHHHHHcCCCcEEEEEcC-CCCChHHHHHHHHHhcCCCEEEEEeCCCCC-CcchHHH-HH
Q 019818 103 TYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLG-RNHGKGEAIRKGMLHSRGELLLMLDADGAT-KVTDLEK-LE 178 (335)
Q Consensus 103 ~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~vi~~~-~~~Gk~~aln~g~~~a~~d~v~~~DaD~~~-~~~~l~~-l~ 178 (335)
.-+|+|+.+.... +.+. ++.++..+ ...|...++..|++....+.++++++|... +++.+.. ++
T Consensus 54 ~~~i~vv~~~~~~------~~~~------~~~~v~~~~~~~g~~~~i~~al~~~~~~~~lv~~~D~P~i~~~~i~~~l~ 120 (201)
T 2e8b_A 54 FKEVYIVAKDREK------FSFL------NAPVVLDEFEESASIIGLYTALKHAKEENVFVLSGDLPLMKKETVLYVLE 120 (201)
T ss_dssp CSEEEEEESCSGG------GGGG------TCCEEECCCSSCCHHHHHHHHHHHCSSSEEEEEETTCTTCCHHHHHHHHH
T ss_pred CCEEEEEeCcHHH------hhcC------CceEEecCCCCCCcHHHHHHHHHHcCCCCEEEEeCCcCcCCHHHHHHHHh
Confidence 3578887654332 1111 24555543 457899999999999888999999999964 7887877 76
|
| >1fxo_A Glucose-1-phosphate thymidylyltransferase; rhamnose, nucleotidyltransferase, pyrophosphorylase, allostery; HET: TMP; 1.66A {Pseudomonas aeruginosa} SCOP: c.68.1.6 PDB: 1fzw_A 1g0r_A* 1g1l_A* 1g23_A* 1g2v_A* 1g3l_A* 1h5r_A* 1h5s_C* 1h5t_A* 1h5s_D* 1h5s_A* 1h5r_B* 1h5s_B* 1h5t_B* 1iim_A* 1iin_A* 3pkp_A* 3pkq_A* 1mp5_A* 1mp3_A* ... | Back alignment and structure |
|---|
Probab=80.01 E-value=5.7 Score=34.67 Aligned_cols=98 Identities=13% Similarity=0.154 Sum_probs=61.9
Q ss_pred EEeccCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCcchHHHHHHHHHH---cCCCcEEEEEcCCCCChHHH
Q 019818 71 IIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRK---YTVDNVRIILLGRNHGKGEA 147 (335)
Q Consensus 71 iip~~ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~---~~~~~i~vi~~~~~~Gk~~a 147 (335)
++|+++. ..|..+++.+... . --+|+||..+... +.+++.... +. .++.++..+...|-+.+
T Consensus 27 llpi~gk-pli~~~l~~l~~~---------g-i~~I~vv~~~~~~---~~i~~~l~~g~~~g-~~i~~~~~~~~~G~~~a 91 (293)
T 1fxo_A 27 LLPVYDK-PMIYYPLSTLMLA---------G-IREILIISTPQDT---PRFQQLLGDGSNWG-LDLQYAVQPSPDGLAQA 91 (293)
T ss_dssp GSEETTE-ETTHHHHHHHHHT---------T-CCEEEEEECTTTH---HHHHHHHTTSGGGT-CEEEEEECSSCCCGGGH
T ss_pred eCeECCE-eHHHHHHHHHHHC---------C-CCEEEEEeccccH---HHHHHHHhcccccC-ceEEEeeCCCCCCHHHH
Confidence 4566664 7788888777651 1 3578877643222 222333222 22 24556666666788889
Q ss_pred HHHHHHhcCCCEEEEEeCCCCCCcchHHHHHHHHHH
Q 019818 148 IRKGMLHSRGELLLMLDADGATKVTDLEKLESQIHA 183 (335)
Q Consensus 148 ln~g~~~a~~d~v~~~DaD~~~~~~~l~~l~~~~~~ 183 (335)
+..|......+-++++.+|..+....+.++++.+.+
T Consensus 92 l~~a~~~i~~~~~~lv~gD~~~~~~~l~~~l~~~~~ 127 (293)
T 1fxo_A 92 FLIGESFIGNDLSALVLGDNLYYGHDFHELLGSASQ 127 (293)
T ss_dssp HHHTHHHHTTSEEEEEETTEEEECTTHHHHHHHHHT
T ss_pred HHHHHHHhCCCCEEEEECChhccCccHHHHHHHHHh
Confidence 888888776566666669987655678888887754
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 335 | ||||
| d2bo4a1 | 381 | c.68.1.18 (A:2-382) Mannosylglycerate synthase, MG | 1e-27 | |
| d1omza_ | 265 | c.68.1.15 (A:) Alpha-1,4-N-acetylhexosaminyltransf | 3e-08 | |
| d1xhba2 | 328 | c.68.1.17 (A:95-422) Polypeptide N-acetylgalactosa | 5e-08 | |
| d1qg8a_ | 255 | c.68.1.1 (A:) Spore coat polysaccharide biosynthes | 1e-06 |
| >d2bo4a1 c.68.1.18 (A:2-382) Mannosylglycerate synthase, MGS {Rhodothermus marinus [TaxId: 29549]} Length = 381 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: MGS-like domain: Mannosylglycerate synthase, MGS species: Rhodothermus marinus [TaxId: 29549]
Score = 108 bits (272), Expect = 1e-27
Identities = 40/263 (15%), Positives = 73/263 (27%), Gaps = 48/263 (18%)
Query: 70 LIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVA-------- 121
++ P +E + + +EVL I + V
Sbjct: 3 VVFPFKHEHPEVLLHNVRVAAAHPRV--------HEVLCIGYERDQTYEAVERAAPEISR 54
Query: 122 --FDFVRKYTVDNVRIILLGRNHGKGEAIRKGMLHSRGELLLMLDADGATKVTD-LEKLE 178
V + + + G+ G A+R + ++ E + DAD + D + K E
Sbjct: 55 ATGTPVSVRLQERLGTLRPGKGDGMNTALRYFLEETQWERIHFYDADITSFGPDWITKAE 114
Query: 179 SQIHAVGRKEYNHGDSVTVDSTFRISDIPIAAFGSRAHLEEKALATRKWYRNFLMKGFHL 238
V + RA A+ T R +
Sbjct: 115 EAAD-------FGYGLVR-------------HYFPRA--STDAMITWMITRTGFALLWP- 151
Query: 239 VVILTAGPGIRDTQCGFKMFTRAAARKLFTNIRLK---RWCFDVELVYLCKRFGIPIIEI 295
T I G + R A L+ + R++ W D ++ + G+ I E
Sbjct: 152 ---HTELSWIEQPLGGELLMRREVAAMLYEDERVRRRSDWGIDTLYTFVTVQQGVSIYEC 208
Query: 296 SVNWSEIPGSKVNPLSIPNMLWE 318
+ + + ML E
Sbjct: 209 YIPEGKAHRLYGGLDDLRTMLVE 231
|
| >d1omza_ c.68.1.15 (A:) Alpha-1,4-N-acetylhexosaminyltransferase (Alpha-GalNAcT EXTL2) {Mouse (Mus musculus) [TaxId: 10090]} Length = 265 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: Exostosin domain: Alpha-1,4-N-acetylhexosaminyltransferase (Alpha-GalNAcT EXTL2) species: Mouse (Mus musculus) [TaxId: 10090]
Score = 51.6 bits (122), Expect = 3e-08
Identities = 15/110 (13%), Positives = 37/110 (33%), Gaps = 12/110 (10%)
Query: 68 ISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRK 127
+LI+ +N L L+ +Y ++V+++ + + ++ +
Sbjct: 5 FTLIMQTYNRTDLLLRLLN---HYQAV------PSLHKVIVVWNNVGEKGPEELWNSLGP 55
Query: 128 YTVDNVRIILLGRNHGKGEAIRKGMLHSRGELLLMLDADGATKVTDLEKL 177
+ + +I + K + +LM+D D DL
Sbjct: 56 H---PIPVIFKPQTANKMRNRLQVFPEVETNAVLMVDDDTLISAQDLVFA 102
|
| >d1xhba2 c.68.1.17 (A:95-422) Polypeptide N-acetylgalactosaminyltransferase 1, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 328 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: Polypeptide N-acetylgalactosaminyltransferase 1, N-terminal domain domain: Polypeptide N-acetylgalactosaminyltransferase 1, N-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Score = 51.5 bits (122), Expect = 5e-08
Identities = 44/231 (19%), Positives = 82/231 (35%), Gaps = 18/231 (7%)
Query: 68 ISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRK 127
S++I NE L T++ + R+ + E++++DD S + + K
Sbjct: 24 TSVVIVFHNEAWST---LLRTVHSVINRSPRH--MIEEIVLVDDASERDFLKRPLESYVK 78
Query: 128 YTVDNVRIILLGRNHGKGEAIRKGMLHSRGELLLMLDADGATKVTDLEKLESQIHAVGRK 187
V +I + + G A KG SRG+++ LDA LE L ++I R
Sbjct: 79 KLKVPVHVIRMEQRSGLIRARLKGAAVSRGQVITFLDAHCECTAGWLEPLLARIKHDRRT 138
Query: 188 EYNHGDSVTVDSTFRI---SDIPIAAFGSRAHLEEKALATRKWYRNFLMKGFHLVVILTA 244
V D TF SD+ F + + + R+ R + + A
Sbjct: 139 VVCPIIDVISDDTFEYMAGSDMTYGGFNWKLNFRWYPVPQREMDRRKGDRTLPVRTPTMA 198
Query: 245 GPGIRDTQCGFKMFTRAAARKL--FTNIRLKRWCFDVELVYLCKRFGIPII 293
G G R +++ + ++E+ + + G +
Sbjct: 199 G--------GLFSIDRDYFQEIGTYDAGMDIWGGENLEISFRIWQCGGTLE 241
|
| >d1qg8a_ c.68.1.1 (A:) Spore coat polysaccharide biosynthesis protein SpsA {Bacillus subtilis [TaxId: 1423]} Length = 255 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: Spore coat polysaccharide biosynthesis protein SpsA domain: Spore coat polysaccharide biosynthesis protein SpsA species: Bacillus subtilis [TaxId: 1423]
Score = 47.0 bits (110), Expect = 1e-06
Identities = 14/75 (18%), Positives = 35/75 (46%), Gaps = 8/75 (10%)
Query: 68 ISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRK 127
+S+I+ ++N+ + ++++ + + D +E+ I+DD S++ T V F+
Sbjct: 3 VSVIMTSYNKSDYVA----KSISSILSQTFSD----FELFIMDDNSNEETLNVIRPFLND 54
Query: 128 YTVDNVRIILLGRNH 142
V + + G
Sbjct: 55 NRVRFYQSDISGVKE 69
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 335 | |||
| d1xhba2 | 328 | Polypeptide N-acetylgalactosaminyltransferase 1, N | 99.96 | |
| d1qg8a_ | 255 | Spore coat polysaccharide biosynthesis protein Sps | 99.91 | |
| d2bo4a1 | 381 | Mannosylglycerate synthase, MGS {Rhodothermus mari | 99.87 | |
| d1omza_ | 265 | Alpha-1,4-N-acetylhexosaminyltransferase (Alpha-Ga | 99.79 | |
| d1pzta_ | 271 | beta 1,4 galactosyltransferase (b4GalT1) {Cow (Bos | 98.07 | |
| d1fo8a_ | 343 | N-acetylglucosaminyltransferase I {Rabbit (Oryctol | 97.86 | |
| d1v82a_ | 252 | Beta-1,3-glucuronyltransferase 1, GlcAT-P {Human ( | 93.59 | |
| d3cu0a1 | 261 | 1,3-Glucuronyltransferase I (glcAT-I) {Human (Homo | 89.57 | |
| d1qwja_ | 228 | CMP acylneuraminate synthetase {Mouse (Mus musculu | 88.02 | |
| d1fxoa_ | 292 | RmlA (RfbA) {Pseudomonas aeruginosa [TaxId: 287]} | 86.82 |
| >d1xhba2 c.68.1.17 (A:95-422) Polypeptide N-acetylgalactosaminyltransferase 1, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: Polypeptide N-acetylgalactosaminyltransferase 1, N-terminal domain domain: Polypeptide N-acetylgalactosaminyltransferase 1, N-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.96 E-value=9.1e-29 Score=224.90 Aligned_cols=216 Identities=20% Similarity=0.164 Sum_probs=143.5
Q ss_pred CCCceEEEEEeccCCC-CChHHHHHHHHHHHHHhhhcCCCC--ceEEEEEECCCCcchH-HHHHHHHHHcCCCcEEEEEc
Q 019818 63 PAEKYISLIIPAFNEE-HRLPGALDETLNYLQQRAAKDKSF--TYEVLIIDDGSSDGTK-RVAFDFVRKYTVDNVRIILL 138 (335)
Q Consensus 63 ~~~~~vsViip~~ne~-~~l~~~l~sl~~~~~~~~~~~~~~--~~eiivvdd~s~d~t~-~~~~~~~~~~~~~~i~vi~~ 138 (335)
...|.||||||+|||+ ..|.+||+|+++ |+++ ..|||||||||+|+|. +.+++..++.+. ++++++.
T Consensus 19 ~~~P~vSIIIp~yNe~~~~l~~~l~Si~~--------qt~~~~~~EIIvVDdgS~d~~~~~~l~~~~~~~~~-~i~vi~~ 89 (328)
T d1xhba2 19 DNLPTTSVVIVFHNEAWSTLLRTVHSVIN--------RSPRHMIEEIVLVDDASERDFLKRPLESYVKKLKV-PVHVIRM 89 (328)
T ss_dssp SCCCCEEEEEEESSCCHHHHHHHHHHHHH--------SSCGGGEEEEEEEECSCCCGGGTHHHHHHHHSSSS-CEEEEEC
T ss_pred CCCCCEEEEEeccCCcHHHHHHHHHHHHh--------cCCCCCCeEEEEEECCCChhhHHHHHHHHHHhcCC-CeEEEEe
Confidence 4568899999999997 568999999988 3433 3699999999999975 566666665542 7999999
Q ss_pred CCCCChHHHHHHHHHhcCCCEEEEEeCCCCCCcchHHHHHHHHHHhccccccCCCcccccccccccCCCeeeeecchhhh
Q 019818 139 GRNHGKGEAIRKGMLHSRGELLLMLDADGATKVTDLEKLESQIHAVGRKEYNHGDSVTVDSTFRISDIPIAAFGSRAHLE 218 (335)
Q Consensus 139 ~~~~Gk~~aln~g~~~a~~d~v~~~DaD~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~g~~~~~~ 218 (335)
++|.|.+.|+|.|++.|+||+|+++|+|+.++|++|+.+++.+.+.+...++.+.......++.+..+.....+....
T Consensus 90 ~~n~G~~~a~N~Gi~~a~gd~i~flD~D~~~~p~~l~~l~~~~~~~~~~~v~~~~~~i~~~~~~~~~~~~~~~~~~~~-- 167 (328)
T d1xhba2 90 EQRSGLIRARLKGAAVSRGQVITFLDAHCECTAGWLEPLLARIKHDRRTVVCPIIDVISDDTFEYMAGSDMTYGGFNW-- 167 (328)
T ss_dssp SSCCCHHHHHHHHHHHCCSSEEEEEESSEEECTTCHHHHHHHHHHCTTEEEEEEEEEECSSSCCEECCCTTEEEEECT--
T ss_pred cccccchHHHHHHHHhhhcceeeecCcccccChhHHHHHHHHHhcCCCeEEecceeeeccCceeeccCCccccccccc--
Confidence 999999999999999999999999999999999999999999988654332111111111111111111111111000
Q ss_pred hHhhhhhhhhHHHHHHHHHHHHHHHh----CCCCccCCCceeeeeHHHHHHhhhhhh-hccc-cchHHHHHHhHHcCCCE
Q 019818 219 EKALATRKWYRNFLMKGFHLVVILTA----GPGIRDTQCGFKMFTRAAARKLFTNIR-LKRW-CFDVELVYLCKRFGIPI 292 (335)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~g~~~~~r~~l~~i~~~~~-~~~~-~~D~el~~r~~~~G~~i 292 (335)
................... ........|++.+++|++++++++..+ ...+ +||.||++|+..+|+++
T Consensus 168 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~irr~~f~~vGgfDe~~~~~g~ED~Dl~~R~~~~G~~i 240 (328)
T d1xhba2 168 -------KLNFRWYPVPQREMDRRKGDRTLPVRTPTMAGGLFSIDRDYFQEIGTYDAGMDIWGGENLEISFRIWQCGGTL 240 (328)
T ss_dssp -------TCCEEEEECCHHHHHHTTTCTTSCEECSBCCSSSEEEEHHHHHHTTSCCTTSCTTCCCCSHHHHHHHHTTCEE
T ss_pred -------cccccccccchhhhhccccccccccccceecceeeeeeHHHHHHhCCCCCCCcCcCchHHHHHHHHHHhCCeE
Confidence 0000000000000111111 112233456677899999999943322 2222 58999999999999999
Q ss_pred EEee
Q 019818 293 IEIS 296 (335)
Q Consensus 293 ~~~p 296 (335)
.++|
T Consensus 241 ~~~p 244 (328)
T d1xhba2 241 EIVT 244 (328)
T ss_dssp EEEE
T ss_pred EEeC
Confidence 9999
|
| >d1qg8a_ c.68.1.1 (A:) Spore coat polysaccharide biosynthesis protein SpsA {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: Spore coat polysaccharide biosynthesis protein SpsA domain: Spore coat polysaccharide biosynthesis protein SpsA species: Bacillus subtilis [TaxId: 1423]
Probab=99.91 E-value=4.6e-25 Score=192.86 Aligned_cols=190 Identities=15% Similarity=0.168 Sum_probs=135.5
Q ss_pred ceEEEEEeccCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCcchHHHHHHHHHHcCCCcEEEEEcC------
Q 019818 66 KYISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLG------ 139 (335)
Q Consensus 66 ~~vsViip~~ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~vi~~~------ 139 (335)
|+||||||+||+++.|.+||+|+++ |+++++|||||||||+|+|.++++++.+. + +++++..+
T Consensus 1 P~vSiiip~yN~~~~l~~~l~Si~~--------Qt~~~~eiivvdd~S~d~t~~~l~~~~~~-~--~i~~~~~~~~~~~~ 69 (255)
T d1qg8a_ 1 PKVSVIMTSYNKSDYVAKSISSILS--------QTFSDFELFIMDDNSNEETLNVIRPFLND-N--RVRFYQSDISGVKE 69 (255)
T ss_dssp CCEEEEEEESSCTTTHHHHHHHHHT--------CSCCCEEEEEEECSCCHHHHHHHGGGGGS-T--TEEEEECCCCSHHH
T ss_pred CEEEEEEecCCCHHHHHHHHHHHHh--------CCCCCeEEEEEECCCCccHHHHHHHhhhh-c--cccccccccccccc
Confidence 6799999999999999999999987 68889999999999999999999988654 3 68888865
Q ss_pred --CCCChHHHHHHHHHhcCCCEEEEEeCCCCCCcchHHHHHHHHHHhccccccCCCcccccccccccCCCeeeeecchh-
Q 019818 140 --RNHGKGEAIRKGMLHSRGELLLMLDADGATKVTDLEKLESQIHAVGRKEYNHGDSVTVDSTFRISDIPIAAFGSRAH- 216 (335)
Q Consensus 140 --~~~Gk~~aln~g~~~a~~d~v~~~DaD~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~g~~~~- 216 (335)
++.|.++|+|.|++.|+||+|+++|+|+.++|++|+.+++.+.++++. +++.|....
T Consensus 70 ~~~~~g~~~a~N~gi~~a~g~~i~~lD~Dd~~~p~~l~~~~~~~~~~~~~--------------------~~v~~~~~~~ 129 (255)
T d1qg8a_ 70 RTEKTRYAALINQAIEMAEGEYITYATDDNIYMPDRLLKMVRELDTHPEK--------------------AVIYSASKTY 129 (255)
T ss_dssp HHSSCHHHHHHHHHHHHCCCSEEEEEETTEEECTTHHHHHHHHHHHCTTC--------------------CEEEEEEEEE
T ss_pred ccccchhcccccccccccccccccccccccccccchHHHHHHHHHhCCCC--------------------CeEeecceee
Confidence 578999999999999999999999999999999999999999887654 344432211
Q ss_pred h-hhHhhhhhhhhHHHHHHHHHHHHHHHhCCCCccCCCceeeeeHHHHHHhhhhh---h----hccccchHHHHHHhHHc
Q 019818 217 L-EEKALATRKWYRNFLMKGFHLVVILTAGPGIRDTQCGFKMFTRAAARKLFTNI---R----LKRWCFDVELVYLCKRF 288 (335)
Q Consensus 217 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~r~~l~~i~~~~---~----~~~~~~D~el~~r~~~~ 288 (335)
. .+............ .......... ..++..++++++++++.... . .....+|.+++.|+..
T Consensus 130 ~~~~~~~~~~~~~~~~--------~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~dl~lrl~~- 199 (255)
T d1qg8a_ 130 HLNENRDIVKETVRPA--------AQVTWNAPCA-IDHCSVMHRYSVLEKVKEKFGSYWDESPAFYRIGDARFFWRVNH- 199 (255)
T ss_dssp EEC---CEEEEEEECC--------CSCBSCCTTT-SCGGGEEEETHHHHHHHHHHSSSSCCCGGGSTTHHHHHHHHHTT-
T ss_pred eeCCCCcEeeeecccc--------hhhhhhhccc-ccchhHHHHHHHHHHHHHhhCCCccccchhcchhhHHHHHHHHc-
Confidence 1 10000000000000 0001111111 22334589999999983221 1 1222459999999865
Q ss_pred CCCEEEee
Q 019818 289 GIPIIEIS 296 (335)
Q Consensus 289 G~~i~~~p 296 (335)
++++.+++
T Consensus 200 ~~~~~~i~ 207 (255)
T d1qg8a_ 200 FYPFYPLD 207 (255)
T ss_dssp TCCBEEEE
T ss_pred CCCEEEec
Confidence 66888776
|
| >d2bo4a1 c.68.1.18 (A:2-382) Mannosylglycerate synthase, MGS {Rhodothermus marinus [TaxId: 29549]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: MGS-like domain: Mannosylglycerate synthase, MGS species: Rhodothermus marinus [TaxId: 29549]
Probab=99.87 E-value=2.1e-21 Score=176.70 Aligned_cols=222 Identities=18% Similarity=0.097 Sum_probs=140.6
Q ss_pred EEEEeccCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCcchHHHHHHHHHH---cCCCcEEEEEc----CCC
Q 019818 69 SLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRK---YTVDNVRIILL----GRN 141 (335)
Q Consensus 69 sViip~~ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~---~~~~~i~vi~~----~~~ 141 (335)
-||||+|||+. .++..+...... .+...||+|+||+|+|.|.++.+...+. .+ ..+..... ..+
T Consensus 2 lVVIP~~NEe~---~il~~~v~~~a~-----~P~~~eIvVvDdsSdDtt~~i~~~~~~~~~~~~-~~v~~~~~~~l~~~~ 72 (381)
T d2bo4a1 2 LVVFPFKHEHP---EVLLHNVRVAAA-----HPRVHEVLCIGYERDQTYEAVERAAPEISRATG-TPVSVRLQERLGTLR 72 (381)
T ss_dssp EEEEECCSSCH---HHHHHHHHHHHH-----STTCCEEEEEESSCCHHHHHHHHHHHHHHHHHS-CCEEEEECCCCSSSS
T ss_pred EEEEEcCCCcH---HHHHHHHHHHHh-----CCCeeEEEEEcCCCCCcHHHHHHHhhhhhcccc-ccchhhhhccccccc
Confidence 48999999983 333333333332 2334677777777777666655544332 12 12332222 225
Q ss_pred CChHHH----HHHHHHhcCCCEEEEEeCCC-CCCcchHHHHHHHHHHhccccccCCCcccccccccccCCCeeeee--cc
Q 019818 142 HGKGEA----IRKGMLHSRGELLLMLDADG-ATKVTDLEKLESQIHAVGRKEYNHGDSVTVDSTFRISDIPIAAFG--SR 214 (335)
Q Consensus 142 ~Gk~~a----ln~g~~~a~~d~v~~~DaD~-~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~g--~~ 214 (335)
.||+.+ +..|++.++||+++++|||. ..+|+++.+++..++.+. ++|.| +|
T Consensus 73 ~GKG~g~~~A~~~g~~~a~gd~lvflDADl~~~~pe~i~~L~~~i~~g~----------------------d~V~g~y~R 130 (381)
T d2bo4a1 73 PGKGDGMNTALRYFLEETQWERIHFYDADITSFGPDWITKAEEAADFGY----------------------GLVRHYFPR 130 (381)
T ss_dssp SSHHHHHHHHHHHHHHHCCCSEEEECCTTCSSCCHHHHHHHHHHHHTTC----------------------SEEEEECCC
T ss_pred CCCcHHHHHHHHHHHHhCCCCEEEEEcCCcCcCCHHHHHHHHHHHhhhc----------------------CeEEEeecc
Confidence 677754 55566788999999999998 578999999999985432 77777 44
Q ss_pred hhhhhHhhhhhhhhHHHHHHHHHHHHHHHhCCCCccCCCceeeeeHHHHHHhhhhhh---hccccchHHHHHHhHHcCCC
Q 019818 215 AHLEEKALATRKWYRNFLMKGFHLVVILTAGPGIRDTQCGFKMFTRAAARKLFTNIR---LKRWCFDVELVYLCKRFGIP 291 (335)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~r~~l~~i~~~~~---~~~~~~D~el~~r~~~~G~~ 291 (335)
.... +...+...+.++ +.+........+.++.||+++|+|++++.++.... ..+|++|.+|+..+.+.|++
T Consensus 131 ~~~~--grvt~~l~~pll----~~l~~~~~~~~i~dPl~G~~a~~R~~~~~L~~~~~v~~~~~~G~Di~lt~~A~~~G~r 204 (381)
T d2bo4a1 131 ASTD--AMITWMITRTGF----ALLWPHTELSWIEQPLGGELLMRREVAAMLYEDERVRRRSDWGIDTLYTFVTVQQGVS 204 (381)
T ss_dssp CTTS--CHHHHHTHHHHH----HHHCTTSSGGGCSCTTCCCEEEEHHHHHHHHHCHHHHTCCSTTHHHHHHHHHHHTTCC
T ss_pred ccCC--CceehHhhHHHH----HHHhhhhcccccccCCcccceeeHHHHHHhhhhccccccCCcccchHHHHHHHHcCCe
Confidence 3211 111222222222 22222222345788999999999999999865543 36899999999999999999
Q ss_pred EEEeeeEEEecCCCcccccchHHHHHHHHHHHhhhh
Q 019818 292 IIEISVNWSEIPGSKVNPLSIPNMLWELALMSVGYR 327 (335)
Q Consensus 292 i~~~p~~~~~~~~s~~~~~~~~~~~~~~~~i~~~y~ 327 (335)
|.++|+...+.+.+-........+....+.-.++-.
T Consensus 205 I~EV~i~~~~l~~~f~~v~~~~f~l~~~~~~~W~~~ 240 (381)
T d2bo4a1 205 IYECYIPEGKAHRLYGGLDDLRTMLVECFAAIQSLQ 240 (381)
T ss_dssp EEEEECTTCCCCCCSCCGGGGHHHHHHHHHHHHHHT
T ss_pred EEecCCCHHHHHHHHHHHHHHHHHHHHHHHHHheec
Confidence 999998766555544455555555555554444433
|
| >d1omza_ c.68.1.15 (A:) Alpha-1,4-N-acetylhexosaminyltransferase (Alpha-GalNAcT EXTL2) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: Exostosin domain: Alpha-1,4-N-acetylhexosaminyltransferase (Alpha-GalNAcT EXTL2) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.79 E-value=1.6e-21 Score=167.60 Aligned_cols=110 Identities=15% Similarity=0.144 Sum_probs=89.1
Q ss_pred ceEEEEEeccCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCcchHHHHHHHHHHcCCCcEEEEEcCCCCChH
Q 019818 66 KYISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNHGKG 145 (335)
Q Consensus 66 ~~vsViip~~ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~vi~~~~~~Gk~ 145 (335)
-++|||||+||+++.|.+||+|+++ |++.+ |+|||||+|+|+|.+.+.+.....+ ..++...+|.|++
T Consensus 3 ~~~tvii~tyn~~~~l~~~l~sl~~--------q~~~~-~~iiV~d~~sd~~~~~i~~~~~~~~---~~~~~~~~~~g~~ 70 (265)
T d1omza_ 3 DSFTLIMQTYNRTDLLLRLLNHYQA--------VPSLH-KVIVVWNNVGEKGPEELWNSLGPHP---IPVIFKPQTANKM 70 (265)
T ss_dssp TCEEEEEEESSCHHHHHHHHHHHTT--------STTEE-EEEEEECCTTCCCTHHHHHHTCCCS---SCEEEEECSSCCG
T ss_pred CcEEEEEEcCCCHHHHHHHHHHHHc--------CCCcC-eEEEEECCCCCccHHHHHHHhcccc---eEEEEecCCCCch
Confidence 3599999999999999999999987 56655 5667777777776666555433333 3444455789999
Q ss_pred HHHHHHHHhcCCCEEEEEeCCCCCCcchHHHHHHHHHHhccc
Q 019818 146 EAIRKGMLHSRGELLLMLDADGATKVTDLEKLESQIHAVGRK 187 (335)
Q Consensus 146 ~aln~g~~~a~~d~v~~~DaD~~~~~~~l~~l~~~~~~~~~~ 187 (335)
.|+|.|++.|+||+|+++|+|+.++|++|+++++.++++++.
T Consensus 71 ~a~n~~~~~a~ge~i~~lD~D~~~~~~~l~~l~~~~~~~~~~ 112 (265)
T d1omza_ 71 RNRLQVFPEVETNAVLMVDDDTLISAQDLVFAFSIWQQFPDQ 112 (265)
T ss_dssp GGGGSCCTTCCSSEEEEECTTEEECHHHHHHHHHHHTTSTTS
T ss_pred hhhhhhHHhCCcCEEEEeCcccCCCHHHHHHHHHHHHhCCCc
Confidence 999999999999999999999999999999999999877653
|
| >d1pzta_ c.68.1.2 (A:) beta 1,4 galactosyltransferase (b4GalT1) {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: beta 1,4 galactosyltransferase (b4GalT1) domain: beta 1,4 galactosyltransferase (b4GalT1) species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.07 E-value=1.4e-05 Score=68.01 Aligned_cols=154 Identities=10% Similarity=0.030 Sum_probs=101.3
Q ss_pred CCCceEEEEEeccCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCcchHHHHHHHHHHcCCCcEEEEEcCCCC
Q 019818 63 PAEKYISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGRNH 142 (335)
Q Consensus 63 ~~~~~vsViip~~ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~vi~~~~~~ 142 (335)
...-+++||||.+|.++.|...+..+...+.. ....++|+||+...+ ...
T Consensus 46 ~~~~kvaIIIPyRdR~~hL~~fl~~l~~~L~~-----q~~~y~I~vieQ~~~-------------------------~~F 95 (271)
T d1pzta_ 46 ISPHKVAIIIPFRNRQEHLKYWLYYLHPILQR-----QQLDYGIYVINQAGE-------------------------SMF 95 (271)
T ss_dssp BCSCEEEEEEEESSCHHHHHHHHHHHHHHHHH-----TTCEEEEEEEEECSS-------------------------SCC
T ss_pred cccceEEEEEecCChHHHHHHHHHHHHHHHHh-----cCCCEEEEEEeccCC-------------------------cch
Confidence 34568999999999998888888888776664 345799999987432 135
Q ss_pred ChHHHHHHHHHhc----CCCEEEEEeCCCCCCcchHHHHHHHHHHhccccccCCCcccccccccccCCCeeeeecchhhh
Q 019818 143 GKGEAIRKGMLHS----RGELLLMLDADGATKVTDLEKLESQIHAVGRKEYNHGDSVTVDSTFRISDIPIAAFGSRAHLE 218 (335)
Q Consensus 143 Gk~~aln~g~~~a----~~d~v~~~DaD~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~g~~~~~~ 218 (335)
.++..+|.|+..| ..+++++-|.|..+..+.... ...+... .+..+....
T Consensus 96 NRg~llNiGf~~a~~~~~~~~~ifHDVDllP~~~~~~Y------~~~~~p~------------------h~~~~~~~~-- 149 (271)
T d1pzta_ 96 NRAKLLNVGFKEALKDYDYNCFVFSDVDLIPMNDHNTY------RCFSQPR------------------HISVAMDKF-- 149 (271)
T ss_dssp CHHHHHHHHHHHHHHHSCCCEEEEECTTEEESBTTSCC------SCCSSCE------------------ECCCEEGGG--
T ss_pred hhhhhhhHHHHHhhhccCccEEEEecCCcCcccccccc------cccccCc------------------ceeeecccc--
Confidence 5788899988876 357899999998775553210 0000000 111110000
Q ss_pred hHhhhhhhhhHHHHHHHHHHHHHHHhCCCCccCCCceeeeeHHHHHHhhhhhh-hcccc-chHHHHHHhHHcCCCEEEee
Q 019818 219 EKALATRKWYRNFLMKGFHLVVILTAGPGIRDTQCGFKMFTRAAARKLFTNIR-LKRWC-FDVELVYLCKRFGIPIIEIS 296 (335)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~r~~l~~i~~~~~-~~~~~-~D~el~~r~~~~G~~i~~~p 296 (335)
-.........||..+|+++.++++.+..+ ..+|+ ||-||..|+..+|++|...+
T Consensus 150 ------------------------~~~~~y~~~~GGv~~~~k~~f~kINGfsN~ywGWGgEDddl~~R~~~~g~~i~R~~ 205 (271)
T d1pzta_ 150 ------------------------GFSLPYVQYFGGVSALSKQQFLSINGFPNNYWGAGGEDDDIYNRLAFRGMSVSRPN 205 (271)
T ss_dssp ------------------------TTSCSCTTCCCSEEEEEHHHHHHTTSCCSCCCSSSSHHHHHHHHHHHTTCCCBCCC
T ss_pred ------------------------ccccccccccceeeeecHHHHhhcCCCCccccCCccccHHHHHHHHHcCCeEEccC
Confidence 01122334567888999999999944322 23333 49999999999999998654
|
| >d1fo8a_ c.68.1.10 (A:) N-acetylglucosaminyltransferase I {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: N-acetylglucosaminyltransferase I domain: N-acetylglucosaminyltransferase I species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=97.86 E-value=2.5e-05 Score=68.38 Aligned_cols=103 Identities=14% Similarity=0.135 Sum_probs=71.6
Q ss_pred EEEEEeccCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCcchHHHHHHHHHHcCCCcEEEEEcCC-------
Q 019818 68 ISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVDNVRIILLGR------- 140 (335)
Q Consensus 68 vsViip~~ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~~i~vi~~~~------- 140 (335)
+-|+|.+||.+ .+.+||+++++... ......|+|..||+.+++.+.+++..+. +..+..+.
T Consensus 4 iPVlv~a~NRP-~l~r~LesLlk~~p------~~~~~~I~Vs~DG~~~~~~~~v~~~~~~-----v~~I~~~~~~~~~~~ 71 (343)
T d1fo8a_ 4 IPILVIACDRS-TVRRCLDKLLHYRP------SAELFPIIVSQDCGHEETAQVIASYGSA-----VTHIRQPDLSNIAVQ 71 (343)
T ss_dssp CCEEEEESSCT-THHHHHHHHHHHCS------CTTTSCEEEEECTTCHHHHHHHHTTGGG-----SEEEECSCCCCCCCC
T ss_pred ccEEEEEcCHH-HHHHHHHHHHhcCc------cccCccEEEEecCCchhHHHHHHHHHHH-----HHHhcCCccccceec
Confidence 67899999997 79999999987411 2345789999999999998888776442 33333321
Q ss_pred --------CCCh----HHHHHHHHHhcCCCEEEEEeCCCCCCcchHHHHHHHHH
Q 019818 141 --------NHGK----GEAIRKGMLHSRGELLLMLDADGATKVTDLEKLESQIH 182 (335)
Q Consensus 141 --------~~Gk----~~aln~g~~~a~~d~v~~~DaD~~~~~~~l~~l~~~~~ 182 (335)
|.|. ..|++..+..-..+.++++..|..+.|+++.-+.+.+.
T Consensus 72 ~~~~k~~~n~giarhy~~AL~~~F~~~~~~~~IiLEDDl~~spdFf~y~~~~l~ 125 (343)
T d1fo8a_ 72 PDHRKFQGYYKIARHYRWALGQIFHNFNYPAAVVVEDDLEVAPDFFEYFQATYP 125 (343)
T ss_dssp TTCGGGHHHHHHHHHHHHHHHHHHTTSCCSEEEEEETTEEECTTHHHHHHHHHH
T ss_pred chhhcccchhHHHHHHHHHHHHHhcccCCceEEEEecCceeeHHHHHHHHHHHH
Confidence 1121 23344444444569999999999999999965555543
|
| >d1v82a_ c.68.1.7 (A:) Beta-1,3-glucuronyltransferase 1, GlcAT-P {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: 1,3-glucuronyltransferase domain: Beta-1,3-glucuronyltransferase 1, GlcAT-P species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.59 E-value=0.28 Score=39.92 Aligned_cols=97 Identities=16% Similarity=0.207 Sum_probs=64.0
Q ss_pred ceEEEEEeccCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEECC--CCcchHHHHHHHHHHcCCCcEEEEEcCCC--
Q 019818 66 KYISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDG--SSDGTKRVAFDFVRKYTVDNVRIILLGRN-- 141 (335)
Q Consensus 66 ~~vsViip~~ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~--s~d~t~~~~~~~~~~~~~~~i~vi~~~~~-- 141 (335)
|.|-||-|+|.......+ |..+.+.+.. -+++.-|||+|+ .++.+.+++++. ++.+.+..-.
T Consensus 2 p~I~vVTPTy~R~~Q~~~-LtRLa~TL~l------Vp~l~WIVVEda~~~t~~va~lL~~s-------gl~y~HL~~~~p 67 (252)
T d1v82a_ 2 PTIHVVTPTYSRPVQKAE-LTRMANTLLH------VPNLHWLVVEDAPRRTPLTARLLRDT-------GLNYTHLHVETP 67 (252)
T ss_dssp CEEEEEEEECCSTTHHHH-HHHHHHHHTT------CSSEEEEEEESSSSCCHHHHHHHHHH-------CCEEEEEECCCC
T ss_pred CCEEEECCCCCchhhHHH-HHHHHhHHhc------CCCceEEEEeCCCCCCHHHHHHHHHc-------CCceEeeccCCC
Confidence 679999999999755443 6677776653 357999999874 355567777765 4555554211
Q ss_pred ---------------CChHHHHHHHHHhcC---------CCEEEEEeCCCCCCcchHHHH
Q 019818 142 ---------------HGKGEAIRKGMLHSR---------GELLLMLDADGATKVTDLEKL 177 (335)
Q Consensus 142 ---------------~Gk~~aln~g~~~a~---------~d~v~~~DaD~~~~~~~l~~l 177 (335)
+| ...+|.|+++.+ .-+|.|.|.|...+-+..++|
T Consensus 68 ~~~~~~~~~~~~~~~rg-~~qRn~aL~~iR~~~~~~~~~~GVVyFADDdNtYsl~lFdem 126 (252)
T d1v82a_ 68 RNYKLRGDARDPRIPRG-TMQRNLALRWLRETFPRNSSQPGVVYFADDDNTYSLELFEEM 126 (252)
T ss_dssp HHHHCCC-----CCCTT-HHHHHHHHHHHHHHSCTTCCCCEEEEECCTTSEECHHHHHHH
T ss_pred ccccccccccccccccc-HHHHHHHHHHHHHhcccccCcceEEEEecCCCcccHHHHHHH
Confidence 11 246888888652 256667788888886666553
|
| >d3cu0a1 c.68.1.7 (A:75-335) 1,3-Glucuronyltransferase I (glcAT-I) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: 1,3-glucuronyltransferase domain: 1,3-Glucuronyltransferase I (glcAT-I) species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.57 E-value=1 Score=36.59 Aligned_cols=97 Identities=14% Similarity=0.122 Sum_probs=61.6
Q ss_pred eEEEEEeccCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEECCC--CcchHHHHHHHHHHcCCCcEEEEEcCC---C
Q 019818 67 YISLIIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGS--SDGTKRVAFDFVRKYTVDNVRIILLGR---N 141 (335)
Q Consensus 67 ~vsViip~~ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s--~d~t~~~~~~~~~~~~~~~i~vi~~~~---~ 141 (335)
.|-||-|+|-...... -|..+.+.+.. -+++.-|||+|+. ++.+.+++++. ++.+.+..- .
T Consensus 2 TIyvVTPTY~R~~Q~a-~LtRLa~TL~l------Vp~l~WIVVEDa~~~t~~v~~lL~~s-------gl~y~HL~~~tp~ 67 (261)
T d3cu0a1 2 TIYVVTPTYARLVQKA-ELVRLSQTLSL------VPRLHWLLVEDAEGPTPLVSGLLAAS-------GLLFTHLVVLTPK 67 (261)
T ss_dssp EEEEEEEECCSTTHHH-HHHHHHHHHTT------SSSEEEEEEESSSSCCHHHHHHHHHH-------CSEEEEEECCCC-
T ss_pred eEEEECCCCCCchhHH-HHHHHHHHHhc------CCCeeEEEEECCCCCCHHHHHHHHHc-------CCceEEeecCCch
Confidence 4788999999975443 35666666654 3579999998753 34556666654 444444321 0
Q ss_pred ---C---------Ch-HHHHHHHHHhcCC-----------------CEEEEEeCCCCCCcchHHHH
Q 019818 142 ---H---------GK-GEAIRKGMLHSRG-----------------ELLLMLDADGATKVTDLEKL 177 (335)
Q Consensus 142 ---~---------Gk-~~aln~g~~~a~~-----------------d~v~~~DaD~~~~~~~l~~l 177 (335)
. -+ ...+|.|++..+. -+|.|.|.|...+-+..++|
T Consensus 68 ~~~~~~~~~~~~~prgv~qRn~aL~~ir~~~~~~~~~~~~~~~~~~GVVyFADDdNtYsl~LF~em 133 (261)
T d3cu0a1 68 AQRLREGEPGWVHPRGVEQRNKALDWLRGRGGAVGGEKDPPPPGTQGVVYFADDDNTYSRELFEEM 133 (261)
T ss_dssp ----------CCCCCSHHHHHHHHHHHTTCCCEEEECCSCCCTTCCEEEEECCTTSEECHHHHHHH
T ss_pred hhcccccCcccccccCHHHHHHHHHHHHHcccccccccccccCCCceEEEEecCCCcccHHHHHHH
Confidence 0 01 1468999988751 46667788888887766663
|
| >d1qwja_ c.68.1.13 (A:) CMP acylneuraminate synthetase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: Cytidylytransferase domain: CMP acylneuraminate synthetase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=88.02 E-value=3.4 Score=32.03 Aligned_cols=101 Identities=18% Similarity=0.181 Sum_probs=63.4
Q ss_pred ceEEEEEeccCCCCChH--------------HHHHHHHHHHHHhhhcCCCCceEEEEEECCCCcchHHHHHHHHHHcCCC
Q 019818 66 KYISLIIPAFNEEHRLP--------------GALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFVRKYTVD 131 (335)
Q Consensus 66 ~~vsViip~~ne~~~l~--------------~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~~~~ 131 (335)
|+|+.||||+-....++ -+++++..+ ..--+|+|..| ++...+.+...
T Consensus 2 ~ki~aiIpaR~~S~Rlp~K~l~~i~gkpLi~~~i~~~~ks---------~~id~Iivstd--~~~i~~~~~~~------- 63 (228)
T d1qwja_ 2 PHLAALVLARGGSKGIPLKNIKRLAGVPLIGWVLRAALDA---------GVFQSVWVSTD--HDEIENVAKQF------- 63 (228)
T ss_dssp CCEEEEEECCSCCSSSSCTTTSEETTEEHHHHHHHHHHHH---------TCCSEEEEEES--CHHHHHHHHHT-------
T ss_pred CCEEEEeccCCCCCCCCCcchhhhCCeeHHHHHHHHHHhc---------CCcceEEEecc--hhhhhhhhhhc-------
Confidence 67999999987665444 456665542 22356777664 34445444433
Q ss_pred cEEEEEcCC-CC----ChHHHHHHHHHhc-CCCEEEEEeCCCCC-CcchHHHHHHHHHHh
Q 019818 132 NVRIILLGR-NH----GKGEAIRKGMLHS-RGELLLMLDADGAT-KVTDLEKLESQIHAV 184 (335)
Q Consensus 132 ~i~vi~~~~-~~----Gk~~aln~g~~~a-~~d~v~~~DaD~~~-~~~~l~~l~~~~~~~ 184 (335)
++.++..+. .. .....+..++..- ..++++++.+|+.+ .++.+.+++..+.+.
T Consensus 64 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~iv~~~~~~P~~~~~~I~~~i~~~~~~ 123 (228)
T d1qwja_ 64 GAQVHRRSSETSKDSSTSLDAIVEFLNYHNEVDIVGNIQATSPCLHPTDLQKVAEMIREE 123 (228)
T ss_dssp TCEEEECCGGGSSTTCCHHHHHHHHHTTCTTCSEEEEECTTCTTCCHHHHHHHHHHHHSS
T ss_pred CccccccccccccccchhhhhhhhccccccccceeeeecccccccCchhhhhhhhhhhcc
Confidence 355554432 22 2344555555443 46999999999865 888999999988754
|
| >d1fxoa_ c.68.1.6 (A:) RmlA (RfbA) {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-diphospho-sugar transferases superfamily: Nucleotide-diphospho-sugar transferases family: glucose-1-phosphate thymidylyltransferase domain: RmlA (RfbA) species: Pseudomonas aeruginosa [TaxId: 287]
Probab=86.82 E-value=0.9 Score=37.87 Aligned_cols=101 Identities=13% Similarity=0.130 Sum_probs=68.5
Q ss_pred EEeccCCCCChHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCcchHHHHHHHH---HHcCCCcEEEEEcCCCCChHHH
Q 019818 71 IIPAFNEEHRLPGALDETLNYLQQRAAKDKSFTYEVLIIDDGSSDGTKRVAFDFV---RKYTVDNVRIILLGRNHGKGEA 147 (335)
Q Consensus 71 iip~~ne~~~l~~~l~sl~~~~~~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~---~~~~~~~i~vi~~~~~~Gk~~a 147 (335)
++|++|. +.|.-.|+.+.. ..--||++|.+....+ ..+++. .+++ .++.++..+...|-+.|
T Consensus 26 llpi~gk-PiI~~~l~~l~~----------~Gi~ei~ii~~~~~~~---~i~~~~~~~~~~g-~~I~y~~q~~~~Gta~a 90 (292)
T d1fxoa_ 26 LLPVYDK-PMIYYPLSTLML----------AGIREILIISTPQDTP---RFQQLLGDGSNWG-LDLQYAVQPSPDGLAQA 90 (292)
T ss_dssp GSEETTE-ETTHHHHHHHHH----------TTCCEEEEEECTTTHH---HHHHHHTTSGGGT-CEEEEEECSSCCCGGGH
T ss_pred cCEECCE-ehHHHHHHHHHH----------CCCCEEEEEeCcCCHH---HHHHHhccccccC-eEEEEccCCCCCcHHHH
Confidence 5788887 788888888866 2345888887654333 233332 2232 36888888888999999
Q ss_pred HHHHHHhcCCC-EEEEEeCCCCCCcchHHHHHHHHHHhccc
Q 019818 148 IRKGMLHSRGE-LLLMLDADGATKVTDLEKLESQIHAVGRK 187 (335)
Q Consensus 148 ln~g~~~a~~d-~v~~~DaD~~~~~~~l~~l~~~~~~~~~~ 187 (335)
+..+......+ .++++.+|...+ ..+..+++...+....
T Consensus 91 i~~a~~~i~~~~~~lil~dD~~~~-~dl~~ll~~h~~~~~~ 130 (292)
T d1fxoa_ 91 FLIGESFIGNDLSALVLGDNLYYG-HDFHELLGSASQRQTG 130 (292)
T ss_dssp HHHTHHHHTTSEEEEEETTEEEEC-TTHHHHHHHHHTCCSS
T ss_pred HHhhhhhcCCCceEEEEccccccC-cCHHHHHHHHHhCCCC
Confidence 99999988764 566666565444 4478888888765443
|