Citrus Sinensis ID: 019853

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-----
MAAKSQIVTGFTMPMTPAPSSSSSSSSSSLCMVKKPLTTSFFNGGVGALKVTRLRIAPSSRSHCYRQGGGALNTRMNLFDRLARVVKSYANAILSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQSAKTATKVSEMLGNVNTSSALSAFEKMEEKVLTMESQADSLNQLTTDDLEGKFALLETSSVDDDLANLKKELSGSSKKGELPPGRAAASSTNTAFPFRDAEIEKELNELRQRAKDF
cccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHccccccccccccccccHHHHccHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHccccHHHHHHHHHHHHcccccccccccccccccccccccccccHHHHHHHHHHHHHHHcc
ccccccccccccccccccccccccccccccEEEcccccccHccccccEEEEEEEEEcccccccccccccccHEEHHcHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHccccHHHHHHHHHHHcccccccccccccccccccccccccccHHHHHHHHHHHHHHHcc
maaksqivtgftmpmtpapsssssssssslcmvkkplttsffnggvgalkvtrlriapssrshcyrqgggalntRMNLFDRLARVVKSYANAILSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQSAKTATKVSEMLGNVNTSSALSAFEKMEEKVLTMESQADSLNQLTTDDLEGKFALLETSSVDDDLANLKKelsgsskkgelppgraaasstntafpfrDAEIEKELNELRQRAKDF
maaksqivtgftmpmtpapssssssssssLCMVKKPLTTSFFNGGVGALKVTrlriapssrshcyrqgggalntRMNLFDRLARVVKSYANAilssfedpEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKaqldqqknvVNNLVSNTRLLESKiqearskkdtlKARAQSAKTATKVSEMLGNVNTSSALSAFEKMEEKVLTMESQADSLNQLTTDDLEGKFALLetssvdddlANLKKElsgsskkgelppgraaasstntafpfrdAEIEKELNELRQRAKDF
MAAKSQIVTGFTMPMTPAPssssssssssLCMVKKPLTTSFFNGGVGALKVTRLRIAPSSRSHCYRQGGGALNTRMNLFDRLARVVKSYANAILSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQSAKTATKVSEMLGNVNTSSALSAFEKMEEKVLTMESQADSLNQLTTDDLEGKFALLETSSVDDDLANlkkelsgsskkgelPPGRAAASSTNTAFPFRDAEIEKELNELRQRAKDF
******************************CMVKKPLTTSFFNGGVGALKVTRLRIAPSSRSHCYRQGGGALNTRMNLFDRLARVVKSYANAILSSFEDPEKILEQAVLEMNDDLVK**************************************************************************************************************************************************************************************************************************
********TGFT*************************TTSFFNGGVGALKVT*********************TRMNLFDRLARVVKSYANAILSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLA******************WYRKAQLALQKGEEDLAREALKRRK**************************************************************************KMEEKVLTMES***********************************************************************E*RQ*****
MAAKSQIVTGFTMPM****************MVKKPLTTSFFNGGVGALKVTRLRIAPSSRSHCYRQGGGALNTRMNLFDRLARVVKSYANAILSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLAS**************SEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQE******************TKVSEMLGNVNTSSALSAFEKMEEKVLTMESQADSLNQLTTDDLEGKFALLETSSVDDDLANLKKE********************NTAFPFRDAEIEKELNE********
*********GFTMPMTPA**********SLCMVKKPLTTSFFNGGVGALKVTRLRIAPSSRSHCYRQGGGALNTRMNLFDRLARVVKSYANAILSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQSAKTATKVSEMLGNVNTSSALSAFEKMEEKVLTMESQADSLNQLTTDDLEGKFALLETSSVDDDLANLKKELS***************************EIEKEL**LRQRA***
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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MAAKSQIVTGFTMPMTPAPSSSSSSSSSSLCMVKKPLTTSFFNGGVGALKVTRLRIAPSSRSHCYRQGGGALNTRMNLFDRLARVVKSYANAILSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASxxxxxxxxxxxxxxxxxxxxxAQLALQKGEEDLxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxTKVSEMLGNVNTSSALSAxxxxxxxxxxxxxxxxxxxxxTTDDLEGKFALLETSSVDDDLANLKKELSGSSKKGELPPGRAAASSTNTAFPFRDAEIEKELNELRQRAKDF
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query335 2.2.26 [Sep-21-2011]
Q03943323 Membrane-associated 30 kD N/A no 0.952 0.987 0.746 1e-133
Q8S0J7317 Probable membrane-associa yes no 0.922 0.974 0.712 1e-125
O80796330 Membrane-associated prote yes no 0.982 0.996 0.696 1e-123
Q55707267 Uncharacterized protein s N/A no 0.752 0.943 0.456 5e-49
Q9RUB7223 Phage shock protein A hom yes no 0.659 0.991 0.340 2e-25
P0AFM8222 Phage shock protein A OS= yes no 0.635 0.959 0.313 3e-19
P0AFM6222 Phage shock protein A OS= N/A no 0.635 0.959 0.313 3e-19
P0AFM7222 Phage shock protein A OS= N/A no 0.635 0.959 0.313 3e-19
P54617227 Phage shock protein A hom yes no 0.611 0.903 0.316 3e-12
O32201225 Protein LiaH OS=Bacillus no no 0.492 0.733 0.290 2e-09
>sp|Q03943|IM30_PEA Membrane-associated 30 kDa protein, chloroplastic OS=Pisum sativum GN=IM30 PE=2 SV=1 Back     alignment and function desciption
 Score =  474 bits (1220), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 253/339 (74%), Positives = 284/339 (83%), Gaps = 20/339 (5%)

Query: 1   MAAKSQIVTGFTMPMTPAPSSSSSSSSSSLCMVKKPLTTSFFNG-GVGALKVTRLRIAPS 59
           M  K QI +G  +P  P   SSS        ++KKPL T+ F    V  LK   +RIA  
Sbjct: 1   MTTKFQIFSG--LPSAPLQPSSS--------LLKKPLATTLFGTRPVDTLKFRVMRIAKP 50

Query: 60  SRSHCYRQGGGALNTRMNLFDRLARVVKSYANAILSSFEDPEKILEQAVLEMNDDLVKMR 119
            R      GGGA+  RMNLFDR ARVVKSYANA++S+FEDPEKILEQAVLEMNDDL KMR
Sbjct: 51  VR------GGGAIGVRMNLFDRFARVVKSYANALVSTFEDPEKILEQAVLEMNDDLTKMR 104

Query: 120 QATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANAL 179
           QATAQVLASQKRLENK KAA+QASE+WYRKAQLALQKGEEDLAREALKRRKS+ADNA++L
Sbjct: 105 QATAQVLASQKRLENKYKAAQQASEEWYRKAQLALQKGEEDLAREALKRRKSFADNASSL 164

Query: 180 KAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQSAKTATKVSEMLGNVNTSSA 239
           KAQLDQQK+VV+NLVSNTRLLESKIQEARSKKDTLKARAQSAKTATKVSEMLGNVNTSSA
Sbjct: 165 KAQLDQQKSVVDNLVSNTRLLESKIQEARSKKDTLKARAQSAKTATKVSEMLGNVNTSSA 224

Query: 240 LSAFEKMEEKVLTMESQADSLNQLTTDDLEGKFALLETSSVDDDLANLKKELSGSSKKGE 299
           LSAFEKMEEKV+TMESQA++L QLTTDDLEGKFA+LETSSVDDDLANLKKEL+GSSKKGE
Sbjct: 225 LSAFEKMEEKVMTMESQAEALGQLTTDDLEGKFAMLETSSVDDDLANLKKELAGSSKKGE 284

Query: 300 LPPGRAAASSTNTAF---PFRDAEIEKELNELRQRAKDF 335
           LPPGR++ +ST +     PFRDA+IE EL +LR+R+K+ 
Sbjct: 285 LPPGRSSTTSTTSTKTGNPFRDADIEIELEQLRKRSKEL 323

Pisum sativum (taxid: 3888)
>sp|Q8S0J7|IM30_ORYSJ Probable membrane-associated 30 kDa protein, chloroplastic OS=Oryza sativa subsp. japonica GN=Os01g0895100 PE=1 SV=1 Back     alignment and function description
>sp|O80796|VIPP1_ARATH Membrane-associated protein VIPP1, chloroplastic OS=Arabidopsis thaliana GN=VIPP1 PE=1 SV=1 Back     alignment and function description
>sp|Q55707|Y617_SYNY3 Uncharacterized protein sll0617 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=sll0617 PE=3 SV=1 Back     alignment and function description
>sp|Q9RUB7|PSPA_DEIRA Phage shock protein A homolog OS=Deinococcus radiodurans (strain ATCC 13939 / DSM 20539 / JCM 16871 / LMG 4051 / NBRC 15346 / NCIMB 9279 / R1 / VKM B-1422) GN=DR_1473 PE=1 SV=1 Back     alignment and function description
>sp|P0AFM8|PSPA_SHIFL Phage shock protein A OS=Shigella flexneri GN=pspA PE=3 SV=2 Back     alignment and function description
>sp|P0AFM6|PSPA_ECOLI Phage shock protein A OS=Escherichia coli (strain K12) GN=pspA PE=1 SV=2 Back     alignment and function description
>sp|P0AFM7|PSPA_ECO57 Phage shock protein A OS=Escherichia coli O157:H7 GN=pspA PE=3 SV=2 Back     alignment and function description
>sp|P54617|PSPA_BACSU Phage shock protein A homolog OS=Bacillus subtilis (strain 168) GN=ydjF PE=1 SV=3 Back     alignment and function description
>sp|O32201|LIAH_BACSU Protein LiaH OS=Bacillus subtilis (strain 168) GN=liaH PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query335
363806682322 uncharacterized protein LOC100818209 [Gl 0.958 0.996 0.803 1e-143
224138834339 predicted protein [Populus trichocarpa] 0.994 0.982 0.756 1e-142
363807044323 uncharacterized protein LOC100781742 [Gl 0.961 0.996 0.797 1e-142
225430912324 PREDICTED: probable membrane-associated 0.967 1.0 0.776 1e-140
449468854332 PREDICTED: membrane-associated 30 kDa pr 0.988 0.996 0.773 1e-138
359478255314 PREDICTED: membrane-associated 30 kDa pr 0.934 0.996 0.745 1e-136
388510656326 unknown [Lotus japonicus] 0.970 0.996 0.776 1e-136
729842323 RecName: Full=Membrane-associated 30 kDa 0.952 0.987 0.746 1e-131
357473093319 Membrane-associated 30 kDa protein [Medi 0.949 0.996 0.761 1e-130
195622012316 membrane-associated 30 kDa protein [Zea 0.919 0.974 0.722 1e-124
>gi|363806682|ref|NP_001242008.1| uncharacterized protein LOC100818209 [Glycine max] gi|255639265|gb|ACU19931.1| unknown [Glycine max] Back     alignment and taxonomy information
 Score =  514 bits (1324), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 270/336 (80%), Positives = 292/336 (86%), Gaps = 15/336 (4%)

Query: 1   MAAKSQIVTGFTMPMTPAPSSSSSSSSSSLCMVKKPLTTSFFNGG-VGALKVTRLRIAPS 59
           MAAK QI TG    + PAP  SSSS+   LC++KKPLTTSFF    V  LK+  +RIA  
Sbjct: 1   MAAKLQIFTG----LPPAPFQSSSST---LCVLKKPLTTSFFGTARVEVLKLRVMRIAKP 53

Query: 60  SRSHCYRQGGGALNTRMNLFDRLARVVKSYANAILSSFEDPEKILEQAVLEMNDDLVKMR 119
           +R      GGGAL  RMNLFDR ARVVKSYANA+LSSFEDPEKILEQAVLEMNDDL KMR
Sbjct: 54  AR------GGGALGARMNLFDRFARVVKSYANAVLSSFEDPEKILEQAVLEMNDDLTKMR 107

Query: 120 QATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANAL 179
           QATAQVLASQKRLENK KAA+QASE+WYRKAQLALQKGEEDLAR ALKRRKSYADNA++L
Sbjct: 108 QATAQVLASQKRLENKYKAAQQASEEWYRKAQLALQKGEEDLARGALKRRKSYADNASSL 167

Query: 180 KAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQSAKTATKVSEMLGNVNTSSA 239
           KAQLDQQK VV NLVSNTRLLESKIQEARSKKDTLKARAQSAKTATKVSEMLGNVNTSSA
Sbjct: 168 KAQLDQQKTVVENLVSNTRLLESKIQEARSKKDTLKARAQSAKTATKVSEMLGNVNTSSA 227

Query: 240 LSAFEKMEEKVLTMESQADSLNQLTTDDLEGKFALLETSSVDDDLANLKKELSGSSKKGE 299
           LSAFEKMEEKVLTMESQA++L QLT+DDLEGKFALLE SSVDDDLANLKKELSG+SKKG+
Sbjct: 228 LSAFEKMEEKVLTMESQAEALGQLTSDDLEGKFALLEGSSVDDDLANLKKELSGASKKGD 287

Query: 300 LPPGRAAASSTNTAFPFRDAEIEKELNELRQRAKDF 335
           LPPGR + +S NT  PFRDAEIE EL++LRQRAK+F
Sbjct: 288 LPPGR-STTSANTGIPFRDAEIELELDQLRQRAKEF 322

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224138834|ref|XP_002322913.1| predicted protein [Populus trichocarpa] gi|222867543|gb|EEF04674.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|363807044|ref|NP_001242581.1| uncharacterized protein LOC100781742 [Glycine max] gi|255641682|gb|ACU21113.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|225430912|ref|XP_002276816.1| PREDICTED: probable membrane-associated 30 kDa protein, chloroplastic [Vitis vinifera] gi|297735245|emb|CBI17607.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|449468854|ref|XP_004152136.1| PREDICTED: membrane-associated 30 kDa protein, chloroplastic-like [Cucumis sativus] gi|449484741|ref|XP_004156967.1| PREDICTED: membrane-associated 30 kDa protein, chloroplastic-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|359478255|ref|XP_002273068.2| PREDICTED: membrane-associated 30 kDa protein, chloroplastic-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|388510656|gb|AFK43394.1| unknown [Lotus japonicus] Back     alignment and taxonomy information
>gi|729842|sp|Q03943.1|IM30_PEA RecName: Full=Membrane-associated 30 kDa protein, chloroplastic; Short=M30; Flags: Precursor gi|169107|gb|AAA53545.1| IM30 [Pisum sativum] Back     alignment and taxonomy information
>gi|357473093|ref|XP_003606831.1| Membrane-associated 30 kDa protein [Medicago truncatula] gi|355507886|gb|AES89028.1| Membrane-associated 30 kDa protein [Medicago truncatula] gi|388508128|gb|AFK42130.1| unknown [Medicago truncatula] Back     alignment and taxonomy information
>gi|195622012|gb|ACG32836.1| membrane-associated 30 kDa protein [Zea mays] gi|219884263|gb|ACL52506.1| unknown [Zea mays] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query335
TAIR|locus:2206290330 PTAC4 "plastid transcriptional 0.982 0.996 0.636 3.2e-104
TIGR_CMR|CPS_3772221 CPS_3772 "phage shock protein 0.623 0.945 0.341 8.2e-28
TIGR_CMR|SO_1807227 SO_1807 "phage shock protein A 0.623 0.920 0.328 3.5e-27
UNIPROTKB|Q9KRG4222 VC1678 "Phage shock protein A" 0.623 0.941 0.345 5.2e-26
TIGR_CMR|VC_1678222 VC_1678 "phage shock protein A 0.623 0.941 0.345 5.2e-26
TIGR_CMR|CPS_4751220 CPS_4751 "phage shock protein 0.626 0.954 0.303 6.6e-26
UNIPROTKB|Q9F4H4221 pspA "Phage shock protein A" [ 0.620 0.941 0.308 1.8e-25
UNIPROTKB|P0AFM6222 pspA [Escherichia coli K-12 (t 0.626 0.945 0.308 2.2e-25
UNIPROTKB|Q81KD9221 BAS4700 "Uncharacterized prote 0.626 0.950 0.276 4.3e-22
TIGR_CMR|BA_5061221 BA_5061 "conserved hypothetica 0.626 0.950 0.276 4.3e-22
TAIR|locus:2206290 PTAC4 "plastid transcriptionally active 4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1032 (368.3 bits), Expect = 3.2e-104, P = 3.2e-104
 Identities = 214/336 (63%), Positives = 257/336 (76%)

Query:     1 MAAKSQIVTGFTMPMTPAPXXXXXXXXXXLCMVK-KPLTTSFFNGGVGALKVTRLRIAPS 59
             MA K+  VTG   P+ P             C ++  PL TSFF    GAL+V  LR+A  
Sbjct:     1 MALKASPVTGLFPPLRPTASSSPSTSSNRPCSLRILPLRTSFFGNSSGALRVNVLRLACD 60

Query:    60 SRSHCYRQGGGALNTRMNLFDRLARVVKSYANAILSSFEDPEKILEQAVLEMNDDLVKMR 119
             +R  C   G GA    MNLF+R +RVVKSYANA++SSFEDPEKILEQ V+EMN DL KMR
Sbjct:    61 NRLRC--NGHGAT---MNLFERFSRVVKSYANALISSFEDPEKILEQTVIEMNSDLTKMR 115

Query:   120 QATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANAL 179
             QATAQVLASQK+L+NK KAA+Q+S+DWY++AQLAL KG+EDLAREALKRRKS+ADNA AL
Sbjct:   116 QATAQVLASQKQLQNKYKAAQQSSDDWYKRAQLALAKGDEDLAREALKRRKSFADNATAL 175

Query:   180 KAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQSAKTATKVSEMLGNVNTSSA 239
             K QLDQQK VV+NLVSNTRLLESKIQEA++KKDTL ARA++AKTATKV EM+G VNTS A
Sbjct:   176 KTQLDQQKGVVDNLVSNTRLLESKIQEAKAKKDTLLARARTAKTATKVQEMIGTVNTSGA 235

Query:   240 LSAFEKMEEKVLTMESQADSLNQLTTDDLEGKFALLETSSVDDDLANXXXXXXXXXXXXX 299
             LSAFEKMEEKV+ MES+AD+L Q+ TD+LEGKF +LETSSVDDDLA+             
Sbjct:   236 LSAFEKMEEKVMAMESEADALTQIGTDELEGKFQMLETSSVDDDLADLKKELSGSSKKGE 295

Query:   300 XPPGRAAASSTNTAFPFRDAEIEKELNELRQRAKDF 335
              PPGR+  +++ T +PF+D+EIE ELNELR++A DF
Sbjct:   296 LPPGRSTVAAS-TRYPFKDSEIENELNELRRKANDF 330
GO:0009507 "chloroplast" evidence=ISM;IDA
GO:0016020 "membrane" evidence=ISS
GO:0010027 "thylakoid membrane organization" evidence=RCA;IMP
GO:0016050 "vesicle organization" evidence=IMP
GO:0009534 "chloroplast thylakoid" evidence=IDA
GO:0009941 "chloroplast envelope" evidence=IDA
GO:0009535 "chloroplast thylakoid membrane" evidence=IDA
GO:0009570 "chloroplast stroma" evidence=IDA
GO:0009295 "nucleoid" evidence=IDA
GO:0009508 "plastid chromosome" evidence=IDA
TIGR_CMR|CPS_3772 CPS_3772 "phage shock protein A" [Colwellia psychrerythraea 34H (taxid:167879)] Back     alignment and assigned GO terms
TIGR_CMR|SO_1807 SO_1807 "phage shock protein A" [Shewanella oneidensis MR-1 (taxid:211586)] Back     alignment and assigned GO terms
UNIPROTKB|Q9KRG4 VC1678 "Phage shock protein A" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)] Back     alignment and assigned GO terms
TIGR_CMR|VC_1678 VC_1678 "phage shock protein A" [Vibrio cholerae O1 biovar El Tor (taxid:686)] Back     alignment and assigned GO terms
TIGR_CMR|CPS_4751 CPS_4751 "phage shock protein A" [Colwellia psychrerythraea 34H (taxid:167879)] Back     alignment and assigned GO terms
UNIPROTKB|Q9F4H4 pspA "Phage shock protein A" [Yersinia enterocolitica (taxid:630)] Back     alignment and assigned GO terms
UNIPROTKB|P0AFM6 pspA [Escherichia coli K-12 (taxid:83333)] Back     alignment and assigned GO terms
UNIPROTKB|Q81KD9 BAS4700 "Uncharacterized protein" [Bacillus anthracis (taxid:1392)] Back     alignment and assigned GO terms
TIGR_CMR|BA_5061 BA_5061 "conserved hypothetical protein" [Bacillus anthracis str. Ames (taxid:198094)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q03943IM30_PEANo assigned EC number0.74630.95220.9876N/Ano
O80796VIPP1_ARATHNo assigned EC number0.69640.98200.9969yesno
Q8S0J7IM30_ORYSJNo assigned EC number0.71290.92230.9747yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query335
COG1842225 COG1842, PspA, Phage shock protein A (IM30), suppr 2e-50
TIGR02977219 TIGR02977, phageshock_pspA, phage shock protein A 7e-44
pfam04012220 pfam04012, PspA_IM30, PspA/IM30 family 1e-43
PRK10698222 PRK10698, PRK10698, phage shock protein PspA; Prov 2e-27
TIGR00998334 TIGR00998, 8a0101, efflux pump membrane protein (m 0.003
>gnl|CDD|224755 COG1842, PspA, Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms] Back     alignment and domain information 
 Score =  167 bits (424), Expect = 2e-50
 Identities = 102/223 (45%), Positives = 142/223 (63%), Gaps = 4/223 (1%)

Query: 76  MNLFDRLARVVKSYANAILSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENK 135
           M +F RL  +VK+  N +L   EDPEK+LEQA+ +M  +L K RQA AQ +A QK+LE K
Sbjct: 1   MGIFSRLKDLVKANINELLDKAEDPEKMLEQAIRDMESELAKARQALAQAIARQKQLERK 60

Query: 136 CKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQLDQQKNVVNNLVS 195
            + A+  +E    KA+LALQ G EDLAREAL+ ++S  D A AL+A+L Q +  V  L  
Sbjct: 61  LEEAQARAEKLEEKAELALQAGNEDLAREALEEKQSLEDLAKALEAELQQAEEQVEKLKK 120

Query: 196 NTRLLESKIQEARSKKDTLKARAQSAKTATKVSEMLGNVNTSSALSAFEKMEEKVLTMES 255
               LE KI E R+KK+ LKAR  +AK   KV+  LG  ++SSA++AFE+MEEK+   E+
Sbjct: 121 QLAALEQKIAELRAKKEALKARKAAAKAQEKVNRSLGGGSSSSAMAAFERMEEKIEEREA 180

Query: 256 QADS---LNQLTTDDLEGKFA-LLETSSVDDDLANLKKELSGS 294
           +A++   L + + DDL+ +FA     S+VD  LA LK  + G 
Sbjct: 181 RAEAAAELAEGSGDDLDKEFAQAGAQSAVDSRLAALKARMKGP 223

Length = 225
>gnl|CDD|213755 TIGR02977, phageshock_pspA, phage shock protein A Back     alignment and domain information
>gnl|CDD|217843 pfam04012, PspA_IM30, PspA/IM30 family Back     alignment and domain information
>gnl|CDD|182657 PRK10698, PRK10698, phage shock protein PspA; Provisional Back     alignment and domain information
>gnl|CDD|233228 TIGR00998, 8a0101, efflux pump membrane protein (multidrug resistance protein A) Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 335
PRK10698222 phage shock protein PspA; Provisional 100.0
TIGR02977219 phageshock_pspA phage shock protein A. Members of 100.0
COG1842225 PspA Phage shock protein A (IM30), suppresses sigm 100.0
PF04012221 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 T 100.0
PTZ00446191 vacuolar sorting protein SNF7-like; Provisional 98.67
KOG1656221 consensus Protein involved in glucose derepression 98.36
PF03357171 Snf7: Snf7; InterPro: IPR005024 This is a family o 98.2
PTZ00464211 SNF-7-like protein; Provisional 98.19
KOG2911439 consensus Uncharacterized conserved protein [Funct 98.02
TIGR02977219 phageshock_pspA phage shock protein A. Members of 97.81
KOG3230224 consensus Vacuolar assembly/sorting protein DID4 [ 97.57
COG1842225 PspA Phage shock protein A (IM30), suppresses sigm 97.39
PRK10698222 phage shock protein PspA; Provisional 97.34
PF04012221 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 T 97.28
KOG2910209 consensus Uncharacterized conserved protein predic 97.14
KOG0996 1293 consensus Structural maintenance of chromosome pro 97.04
PRK04863 1486 mukB cell division protein MukB; Provisional 96.69
TIGR00606 1311 rad50 rad50. This family is based on the phylogeno 96.26
PF08317325 Spc7: Spc7 kinetochore protein; InterPro: IPR01325 96.17
PRK09039343 hypothetical protein; Validated 96.07
PF00261237 Tropomyosin: Tropomyosin; InterPro: IPR000533 Trop 96.01
PRK09039343 hypothetical protein; Validated 95.85
TIGR02169 1164 SMC_prok_A chromosome segregation protein SMC, pri 95.82
COG1196 1163 Smc Chromosome segregation ATPases [Cell division 95.64
PRK02224 880 chromosome segregation protein; Provisional 95.47
PRK04863 1486 mukB cell division protein MukB; Provisional 95.45
TIGR02169 1164 SMC_prok_A chromosome segregation protein SMC, pri 95.44
PF00261237 Tropomyosin: Tropomyosin; InterPro: IPR000533 Trop 95.27
PF09726697 Macoilin: Transmembrane protein; InterPro: IPR0191 95.13
PF08317325 Spc7: Spc7 kinetochore protein; InterPro: IPR01325 95.1
KOG0250 1074 consensus DNA repair protein RAD18 (SMC family pro 95.07
COG4372 499 Uncharacterized protein conserved in bacteria with 95.0
KOG09941758 consensus Extracellular matrix glycoprotein Lamini 94.97
COG1196 1163 Smc Chromosome segregation ATPases [Cell division 94.95
KOG09941758 consensus Extracellular matrix glycoprotein Lamini 94.91
KOG0971 1243 consensus Microtubule-associated protein dynactin 94.91
KOG3232203 consensus Vacuolar assembly/sorting protein DID2 [ 94.61
KOG1655218 consensus Protein involved in vacuolar protein sor 94.59
PRK02224 880 chromosome segregation protein; Provisional 94.46
KOG3231208 consensus Predicted assembly/vacuolar sorting prot 94.43
PRK11637 428 AmiB activator; Provisional 94.41
KOG0161 1930 consensus Myosin class II heavy chain [Cytoskeleto 94.34
PF12128 1201 DUF3584: Protein of unknown function (DUF3584); In 94.3
PF12128 1201 DUF3584: Protein of unknown function (DUF3584); In 94.17
PRK11637 428 AmiB activator; Provisional 94.14
smart00787312 Spc7 Spc7 kinetochore protein. This domain is foun 93.93
KOG0161 1930 consensus Myosin class II heavy chain [Cytoskeleto 93.77
PHA02562 562 46 endonuclease subunit; Provisional 93.66
KOG3229227 consensus Vacuolar sorting protein VPS24 [Intracel 93.6
PF06160 560 EzrA: Septation ring formation regulator, EzrA ; I 93.46
PF12718143 Tropomyosin_1: Tropomyosin like; InterPro: IPR0005 93.35
PRK04778569 septation ring formation regulator EzrA; Provision 93.27
KOG0971 1243 consensus Microtubule-associated protein dynactin 93.18
smart00787312 Spc7 Spc7 kinetochore protein. This domain is foun 92.92
PTZ00464211 SNF-7-like protein; Provisional 92.79
KOG0996 1293 consensus Structural maintenance of chromosome pro 92.79
PF10168717 Nup88: Nuclear pore component; InterPro: IPR019321 92.61
KOG0963 629 consensus Transcription factor/CCAAT displacement 92.6
COG1382119 GimC Prefoldin, chaperonin cofactor [Posttranslati 92.58
PF11180192 DUF2968: Protein of unknown function (DUF2968); In 92.57
TIGR03319 514 YmdA_YtgF conserved hypothetical protein YmdA/YtgF 92.55
PRK04778569 septation ring formation regulator EzrA; Provision 92.44
PF06008264 Laminin_I: Laminin Domain I; InterPro: IPR009254 L 92.17
PF12718143 Tropomyosin_1: Tropomyosin like; InterPro: IPR0005 92.07
PRK12704 520 phosphodiesterase; Provisional 92.0
PRK10884206 SH3 domain-containing protein; Provisional 91.97
KOG0977 546 consensus Nuclear envelope protein lamin, intermed 91.78
PHA02562 562 46 endonuclease subunit; Provisional 91.68
PF09730 717 BicD: Microtubule-associated protein Bicaudal-D; I 91.49
KOG0804493 consensus Cytoplasmic Zn-finger protein BRAP2 (BRC 91.48
TIGR02231 525 conserved hypothetical protein. This family consis 91.22
PF09726697 Macoilin: Transmembrane protein; InterPro: IPR0191 91.15
PRK03918 880 chromosome segregation protein; Provisional 91.03
TIGR01843423 type_I_hlyD type I secretion membrane fusion prote 90.71
PF10498359 IFT57: Intra-flagellar transport protein 57 ; Inte 90.7
PF00769246 ERM: Ezrin/radixin/moesin family; InterPro: IPR011 90.55
PF00038312 Filament: Intermediate filament protein; InterPro: 90.44
PF10174 775 Cast: RIM-binding protein of the cytomatrix active 90.37
KOG0250 1074 consensus DNA repair protein RAD18 (SMC family pro 90.18
TIGR03007 498 pepcterm_ChnLen polysaccharide chain length determ 90.09
PF10168717 Nup88: Nuclear pore component; InterPro: IPR019321 90.05
KOG0804493 consensus Cytoplasmic Zn-finger protein BRAP2 (BRC 89.72
TIGR01005 754 eps_transp_fam exopolysaccharide transport protein 89.33
TIGR01843423 type_I_hlyD type I secretion membrane fusion prote 89.32
COG1579239 Zn-ribbon protein, possibly nucleic acid-binding [ 89.03
KOG0977 546 consensus Nuclear envelope protein lamin, intermed 88.92
PF13166 712 AAA_13: AAA domain 88.85
KOG0979 1072 consensus Structural maintenance of chromosome pro 88.79
PRK1542279 septal ring assembly protein ZapB; Provisional 88.67
PF06160 560 EzrA: Septation ring formation regulator, EzrA ; I 88.49
TIGR00606 1311 rad50 rad50. This family is based on the phylogeno 88.19
PF03357171 Snf7: Snf7; InterPro: IPR005024 This is a family o 88.15
KOG0018 1141 consensus Structural maintenance of chromosome pro 88.08
PF13514 1111 AAA_27: AAA domain 87.97
KOG0249 916 consensus LAR-interacting protein and related prot 87.93
KOG1029 1118 consensus Endocytic adaptor protein intersectin [S 87.77
TIGR03752 472 conj_TIGR03752 integrating conjugative element pro 87.72
PF11932251 DUF3450: Protein of unknown function (DUF3450); In 87.42
KOG0980 980 consensus Actin-binding protein SLA2/Huntingtin-in 87.22
PRK03918880 chromosome segregation protein; Provisional 86.96
TIGR03017444 EpsF chain length determinant protein EpsF. Sequen 86.87
PF13851201 GAS: Growth-arrest specific micro-tubule binding 86.27
COG1579239 Zn-ribbon protein, possibly nucleic acid-binding [ 86.15
PF12325120 TMF_TATA_bd: TATA element modulatory factor 1 TATA 85.99
COG4372 499 Uncharacterized protein conserved in bacteria with 85.82
KOG0982502 consensus Centrosomal protein Nuf [Cell cycle cont 85.68
PRK10869 553 recombination and repair protein; Provisional 85.58
PRK09343121 prefoldin subunit beta; Provisional 85.45
TIGR00634 563 recN DNA repair protein RecN. All proteins in this 85.45
PF13514 1111 AAA_27: AAA domain 84.72
PF10481 307 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR0 84.55
COG307479 Uncharacterized protein conserved in bacteria [Fun 84.2
PF08614194 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR 84.13
COG1566352 EmrA Multidrug resistance efflux pump [Defense mec 83.91
TIGR03185650 DNA_S_dndD DNA sulfur modification protein DndD. T 83.82
PF1004699 BLOC1_2: Biogenesis of lysosome-related organelles 83.76
PRK11281 1113 hypothetical protein; Provisional 83.12
PF06785401 UPF0242: Uncharacterised protein family (UPF0242); 82.84
PF03194254 LUC7: LUC7 N_terminus; InterPro: IPR004882 This fa 82.66
TIGR01010362 BexC_CtrB_KpsE polysaccharide export inner-membran 82.42
PF05701522 WEMBL: Weak chloroplast movement under blue light; 82.24
PF03148384 Tektin: Tektin family; InterPro: IPR000435 Tektin 82.14
PF05384159 DegS: Sensor protein DegS; InterPro: IPR008595 Thi 82.04
KOG2911439 consensus Uncharacterized conserved protein [Funct 82.01
KOG2685421 consensus Cystoskeletal protein Tektin [Cytoskelet 81.7
PF05816333 TelA: Toxic anion resistance protein (TelA); Inter 81.58
PF06637442 PV-1: PV-1 protein (PLVAP); InterPro: IPR009538 Th 81.1
PRK07720146 fliJ flagellar biosynthesis chaperone; Validated 80.85
KOG0976 1265 consensus Rho/Rac1-interacting serine/threonine ki 80.64
PF06120301 Phage_HK97_TLTM: Tail length tape measure protein; 80.42
COG2433652 Uncharacterized conserved protein [Function unknow 80.41
TIGR03007498 pepcterm_ChnLen polysaccharide chain length determ 80.4
PF04111314 APG6: Autophagy protein Apg6; InterPro: IPR007243 80.08
PRK00409782 recombination and DNA strand exchange inhibitor pr 80.05
>PRK10698 phage shock protein PspA; Provisional Back     alignment and domain information 
Probab=100.00  E-value=3.7e-47  Score=350.77  Aligned_cols=219  Identities=31%  Similarity=0.498  Sum_probs=213.4

Q ss_pred             CchHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019853           76 MNLFDRLARVVKSYANAILSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQ  155 (335)
Q Consensus        76 Msif~Rl~~lira~in~~ldk~EDPe~~LdQ~Ireme~~L~kar~~lA~v~A~~k~le~kl~~~~~~~~~~e~rA~~AL~  155 (335)
                      ||||+||+++|+|++|+++|++|||++||+|+|++|++++.++++++|++++.++++++++.+++..+.+|+.+|..||.
T Consensus         1 M~if~Rl~~ii~a~in~~ldkaEDP~k~l~q~i~em~~~l~~~r~alA~~~A~~k~~er~~~~~~~~~~~~e~kA~~Al~   80 (222)
T PRK10698          1 MGIFSRFADIVNANINALLEKAEDPQKLVRLMIQEMEDTLVEVRSTSARALAEKKQLTRRIEQAEAQQVEWQEKAELALR   80 (222)
T ss_pred             CCHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 019853          156 KGEEDLAREALKRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTLKARAQSAKTATKVSEMLGNVN  235 (335)
Q Consensus       156 ~G~EdLAreAL~rk~~~e~q~~~le~qle~~~~~v~~Lk~~l~~Le~ki~e~k~kr~~LkAr~~~AkAq~~v~~~~~~~~  235 (335)
                      +|+|||||+||.+|..++.++..|+.+++.+...+++|+.++..|+.+|.+++.++++|++|+++|+++.++++.+++++
T Consensus        81 ~G~EdLAr~AL~~K~~~~~~~~~l~~~~~~~~~~~~~L~~~l~~L~~ki~eak~k~~~L~aR~~~A~a~~~~~~~~~~~~  160 (222)
T PRK10698         81 KEKEDLARAALIEKQKLTDLIATLEHEVTLVDETLARMKKEIGELENKLSETRARQQALMLRHQAASSSRDVRRQLDSGK  160 (222)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCcHHHHHHHHHHHHHhHHHHHHHhhcccCCChhHHHhhhccC-CHHHHHHHHHHHcCCC
Q 019853          236 TSSALSAFEKMEEKVLTMESQADSLNQLTTDDLEGKFALLETS-SVDDDLANLKKELSGS  294 (335)
Q Consensus       236 ~~~a~~~feRmEeki~~~EA~AeA~~eL~~~~Le~k~a~le~~-~vddeLa~LKa~l~~~  294 (335)
                      +++++..|+|||+||+++|++++|+..+.+++|+.+|+.|+.+ .||++|++||++|+..
T Consensus       161 ~~~a~~~f~rmE~ki~~~Ea~aea~~~~~~~~l~~e~~~le~~~~ve~ELa~LK~~~~~~  220 (222)
T PRK10698        161 LDEAMARFESFERRIDQMEAEAESHGFGKQKSLDQQFAELKADDEISEQLAALKAKMKQD  220 (222)
T ss_pred             cchHHHHHHHHHHHHHHHHHHHhHhhccCCCCHHHHHHHhhccchHHHHHHHHHHHhccc
Confidence            9999999999999999999999999776567899999999864 6999999999999654

>TIGR02977 phageshock_pspA phage shock protein A Back     alignment and domain information
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms] Back     alignment and domain information
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription Back     alignment and domain information
>PTZ00446 vacuolar sorting protein SNF7-like; Provisional Back     alignment and domain information
>KOG1656 consensus Protein involved in glucose derepression and pre-vacuolar endosome protein sorting [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF03357 Snf7: Snf7; InterPro: IPR005024 This is a family of eukaryotic proteins which are variously described as either hypothetical protein, developmental protein or related to yeast SNF7 Back     alignment and domain information
>PTZ00464 SNF-7-like protein; Provisional Back     alignment and domain information
>KOG2911 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>TIGR02977 phageshock_pspA phage shock protein A Back     alignment and domain information
>KOG3230 consensus Vacuolar assembly/sorting protein DID4 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms] Back     alignment and domain information
>PRK10698 phage shock protein PspA; Provisional Back     alignment and domain information
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription Back     alignment and domain information
>KOG2910 consensus Uncharacterized conserved protein predicted to be involved in protein sorting [General function prediction only] Back     alignment and domain information
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PRK04863 mukB cell division protein MukB; Provisional Back     alignment and domain information
>TIGR00606 rad50 rad50 Back     alignment and domain information
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [] Back     alignment and domain information
>PRK09039 hypothetical protein; Validated Back     alignment and domain information
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells Back     alignment and domain information
>PRK09039 hypothetical protein; Validated Back     alignment and domain information
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>PRK02224 chromosome segregation protein; Provisional Back     alignment and domain information
>PRK04863 mukB cell division protein MukB; Provisional Back     alignment and domain information
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells Back     alignment and domain information
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes Back     alignment and domain information
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [] Back     alignment and domain information
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair] Back     alignment and domain information
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown] Back     alignment and domain information
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures] Back     alignment and domain information
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures] Back     alignment and domain information
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton] Back     alignment and domain information
>KOG3232 consensus Vacuolar assembly/sorting protein DID2 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1655 consensus Protein involved in vacuolar protein sorting [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PRK02224 chromosome segregation protein; Provisional Back     alignment and domain information
>KOG3231 consensus Predicted assembly/vacuolar sorting protein [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PRK11637 AmiB activator; Provisional Back     alignment and domain information
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton] Back     alignment and domain information
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins Back     alignment and domain information
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins Back     alignment and domain information
>PRK11637 AmiB activator; Provisional Back     alignment and domain information
>smart00787 Spc7 Spc7 kinetochore protein Back     alignment and domain information
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton] Back     alignment and domain information
>PHA02562 46 endonuclease subunit; Provisional Back     alignment and domain information
>KOG3229 consensus Vacuolar sorting protein VPS24 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site Back     alignment and domain information
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells Back     alignment and domain information
>PRK04778 septation ring formation regulator EzrA; Provisional Back     alignment and domain information
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton] Back     alignment and domain information
>smart00787 Spc7 Spc7 kinetochore protein Back     alignment and domain information
>PTZ00464 SNF-7-like protein; Provisional Back     alignment and domain information
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs Back     alignment and domain information
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription] Back     alignment and domain information
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF11180 DUF2968: Protein of unknown function (DUF2968); InterPro: IPR021350 This family of proteins has no known function Back     alignment and domain information
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF Back     alignment and domain information
>PRK04778 septation ring formation regulator EzrA; Provisional Back     alignment and domain information
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells Back     alignment and domain information
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells Back     alignment and domain information
>PRK12704 phosphodiesterase; Provisional Back     alignment and domain information
>PRK10884 SH3 domain-containing protein; Provisional Back     alignment and domain information
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure] Back     alignment and domain information
>PHA02562 46 endonuclease subunit; Provisional Back     alignment and domain information
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) [] Back     alignment and domain information
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only] Back     alignment and domain information
>TIGR02231 conserved hypothetical protein Back     alignment and domain information
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes Back     alignment and domain information
>PRK03918 chromosome segregation protein; Provisional Back     alignment and domain information
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family Back     alignment and domain information
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms Back     alignment and domain information
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin [] Back     alignment and domain information
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope Back     alignment and domain information
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion [] Back     alignment and domain information
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair] Back     alignment and domain information
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily Back     alignment and domain information
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs Back     alignment and domain information
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only] Back     alignment and domain information
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family Back     alignment and domain information
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family Back     alignment and domain information
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only] Back     alignment and domain information
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure] Back     alignment and domain information
>PF13166 AAA_13: AAA domain Back     alignment and domain information
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair] Back     alignment and domain information
>PRK15422 septal ring assembly protein ZapB; Provisional Back     alignment and domain information
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site Back     alignment and domain information
>TIGR00606 rad50 rad50 Back     alignment and domain information
>PF03357 Snf7: Snf7; InterPro: IPR005024 This is a family of eukaryotic proteins which are variously described as either hypothetical protein, developmental protein or related to yeast SNF7 Back     alignment and domain information
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF13514 AAA_27: AAA domain Back     alignment and domain information
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only] Back     alignment and domain information
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family Back     alignment and domain information
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function Back     alignment and domain information
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton] Back     alignment and domain information
>PRK03918 chromosome segregation protein; Provisional Back     alignment and domain information
>TIGR03017 EpsF chain length determinant protein EpsF Back     alignment and domain information
>PF13851 GAS: Growth-arrest specific micro-tubule binding Back     alignment and domain information
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only] Back     alignment and domain information
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes [] Back     alignment and domain information
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown] Back     alignment and domain information
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton] Back     alignment and domain information
>PRK10869 recombination and repair protein; Provisional Back     alignment and domain information
>PRK09343 prefoldin subunit beta; Provisional Back     alignment and domain information
>TIGR00634 recN DNA repair protein RecN Back     alignment and domain information
>PF13514 AAA_27: AAA domain Back     alignment and domain information
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore [] Back     alignment and domain information
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells Back     alignment and domain information
>COG1566 EmrA Multidrug resistance efflux pump [Defense mechanisms] Back     alignment and domain information
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD Back     alignment and domain information
>PF10046 BLOC1_2: Biogenesis of lysosome-related organelles complex-1 subunit 2 ; InterPro: IPR019269 This entry represents a family of proteins that play a role in cellular proliferation, as well as in the biogenesis of specialised organelles of the endosomal-lysosomal system [] Back     alignment and domain information
>PRK11281 hypothetical protein; Provisional Back     alignment and domain information
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function Back     alignment and domain information
>PF03194 LUC7: LUC7 N_terminus; InterPro: IPR004882 This family consists of several LUC7 protein homologues that are restricted to eukaryotes Back     alignment and domain information
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family Back     alignment and domain information
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function Back     alignment and domain information
>PF03148 Tektin: Tektin family; InterPro: IPR000435 Tektin heteropolymers form unique protofilaments of flagellar microtubules [] Back     alignment and domain information
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins Back     alignment and domain information
>KOG2911 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG2685 consensus Cystoskeletal protein Tektin [Cytoskeleton] Back     alignment and domain information
>PF05816 TelA: Toxic anion resistance protein (TelA); InterPro: IPR008863 This family consists of several prokaryotic TelA like proteins Back     alignment and domain information
>PF06637 PV-1: PV-1 protein (PLVAP); InterPro: IPR009538 This family consists of several PV-1 (PLVAP) proteins, which seem to be specific to mammals Back     alignment and domain information
>PRK07720 fliJ flagellar biosynthesis chaperone; Validated Back     alignment and domain information
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms] Back     alignment and domain information
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12) Back     alignment and domain information
>COG2433 Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily Back     alignment and domain information
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells Back     alignment and domain information
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query335
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-08
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-06
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 1e-06
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 7e-05
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 54.9 bits (131), Expect = 2e-08
 Identities = 57/356 (16%), Positives = 109/356 (30%), Gaps = 98/356 (27%)

Query: 30  LCMVKKPLTTSFFNGGVGALK------VTRLR---IAPSSRSHCYRQGGGALNTRMNLFD 80
           L   ++ +   F       L+      ++ ++     PS  +  Y      +  R    D
Sbjct: 71  LLSKQEEMVQKFVEE---VLRINYKFLMSPIKTEQRQPSMMTRMY------IEQR----D 117

Query: 81  RLARVVKSYANAILSSFEDPEKILEQAVLEMNDD----LVKMRQATAQVLASQ--KRLEN 134
           RL    + +A   +S  + P   L QA+LE+       +  +  +    +A       + 
Sbjct: 118 RLYNDNQVFAKYNVSRLQ-PYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKV 176

Query: 135 KCKAAEQASEDWYRKAQLALQKGEEDLAREALKRRKSYADNANALKAQLDQQKNVVNNLV 194
           +CK   +    W       L     +     L+           L  Q+D      ++  
Sbjct: 177 QCKMDFKIF--W-------LNLKNCNSPETVLE-------MLQKLLYQIDPNWTSRSDHS 220

Query: 195 SNTRLLESKIQEARSKKDTLKARAQSAKTATKVSEMLGNVNTSSALSAFEKMEEKVL--T 252
           SN +L   +I   +++   L    +  +    V   L NV  + A +AF  +  K+L  T
Sbjct: 221 SNIKL---RIHSIQAELRRLLKS-KPYENCLLV---LLNVQNAKAWNAFN-LSCKILLTT 272

Query: 253 MESQ-ADSLNQ--------------LTTDDLEGKFALLETSSVDDDLANLKKELSGSSKK 297
              Q  D L+               LT D+++            D    L +E+  ++  
Sbjct: 273 RFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQD----LPREVLTTN-- 326

Query: 298 GELPP------GRAAASSTNTAFPFRDAEIEK------------ELNELRQRAKDF 335
               P        +      T   ++    +K            E  E R+     
Sbjct: 327 ----PRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRL 378
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 Back     alignment and structure
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query335
3mq9_A471 Bone marrow stromal antigen 2 fused to maltose-BI 97.14
4abm_A79 Charged multivesicular BODY protein 4B; cell cycle 97.04
3frt_A218 Charged multivesicular BODY protein 3; ESCRT, ESCR 96.83
3na7_A256 HP0958; flagellar biogenesis, flagellum export, C4 96.24
2gd5_A179 Charged multivesicular BODY protein 3; CHMP3, ESCR 96.08
2fxo_A129 Myosin heavy chain, cardiac muscle beta isoform; c 96.07
3oja_B597 Anopheles plasmodium-responsive leucine-rich REPE 95.56
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 94.75
3vkg_A 3245 Dynein heavy chain, cytoplasmic; AAA+ protein, mol 93.97
1i84_S 1184 Smooth muscle myosin heavy chain; muscle protein, 93.9
3vkg_A 3245 Dynein heavy chain, cytoplasmic; AAA+ protein, mol 92.46
3oja_B597 Anopheles plasmodium-responsive leucine-rich REPE 92.04
3o0z_A168 RHO-associated protein kinase 1; coiled-coil, tran 91.36
3mq7_A121 Bone marrow stromal antigen 2; HIV, antiviral prot 91.11
2v71_A189 Nuclear distribution protein NUDE-like 1; developm 90.06
3bas_A89 Myosin heavy chain, striated muscle/general contro 89.65
1deq_A390 Fibrinogen (alpha chain); coiled-coil, blood clott 89.48
3ghg_A 562 Fibrinogen alpha chain; triple-stranded coiled coi 87.4
2efr_A155 General control protein GCN4 and tropomyosin 1 Al; 86.82
3ajw_A150 Flagellar FLIJ protein; flagellum, type III secret 86.34
3na7_A256 HP0958; flagellar biogenesis, flagellum export, C4 85.98
3iox_A 497 AGI/II, PA; alpha helix, PPII helix, supersandwich 85.38
4fm3_A98 Uncharacterized hypothetical protein; PF14346 fami 84.63
3ghg_A 562 Fibrinogen alpha chain; triple-stranded coiled coi 84.41
3u59_A101 Tropomyosin beta chain; muscle contraction, actin, 84.25
3u1c_A101 Tropomyosin alpha-1 chain; anti-parallel coiled co 83.85
1m1j_B 464 Fibrinogen beta chain; coiled coils, disulfide rin 83.59
3ol1_A119 Vimentin; structural genomics, PSI-2, protein stru 83.11
2dfs_A1080 Myosin-5A; myosin-V, inhibited state, cryoelectron 82.36
2v4h_A110 NF-kappa-B essential modulator; transcription, met 82.11
2v71_A189 Nuclear distribution protein NUDE-like 1; developm 81.82
3oja_A487 Leucine-rich immune molecule 1; coiled-coil, helix 81.56
1ic2_A81 Tropomyosin alpha chain, skeletal muscle; alpha-he 80.89
1l8d_A112 DNA double-strand break repair RAD50 ATPase; zinc 80.8
1deq_A 390 Fibrinogen (alpha chain); coiled-coil, blood clott 80.68
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli} Back     alignment and structure
Probab=97.14  E-value=0.029  Score=55.28  Aligned_cols=121  Identities=15%  Similarity=0.129  Sum_probs=83.5

Q ss_pred             hHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 019853           78 LFDRLARVVKSYANAILSSFEDPEKILEQAVLEMNDDLVKMRQATAQVLASQKRLENKCKAAEQASEDWYRKAQLALQKG  157 (335)
Q Consensus        78 if~Rl~~lira~in~~ldk~EDPe~~LdQ~Ireme~~L~kar~~lA~v~A~~k~le~kl~~~~~~~~~~e~rA~~AL~~G  157 (335)
                      -+..+.+++...+..++..-.||+..|+.+..++++.|.+.+... +..--...+++++.+++....+.+.+|-.|-.. 
T Consensus       349 ~~~~~~~~~~~~~~~vl~G~~t~eeal~~~~~~i~~~l~~~~~~~-e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  426 (471)
T 3mq9_A          349 QMSAFWYAVRTAVINAASGRQTVDEALKDAQTRITAARDGLRAVM-EARNVTHLLQQELTEAQKGFQDVEAQAATANHT-  426 (471)
T ss_dssp             THHHHHHHHHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred             cHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhHHHH-HhhhHHHHHHHHHHHHhhhHHHHHHHhhhcchh-
Confidence            356778888888899988888999999999999999998876554 667778889999999999999999998876322 


Q ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019853          158 EEDLAREALKRRKSYADNANALKAQLDQQKNVVNNLVSNTRLLESKIQEARSKKDTL  214 (335)
Q Consensus       158 ~EdLAreAL~rk~~~e~q~~~le~qle~~~~~v~~Lk~~l~~Le~ki~e~k~kr~~L  214 (335)
                             ...-..+++..+..-+       ..+.+|+.++.++.++|++++.+.+.+
T Consensus       427 -------~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~  469 (471)
T 3mq9_A          427 -------VMALMASLDAEKAQGQ-------KKVEELEGEITTLNHKLQDASAEVERL  469 (471)
T ss_dssp             -------HHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             -------HHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence                   2222333333333322       344444444445555555544444433
>4abm_A Charged multivesicular BODY protein 4B; cell cycle, protein transport, HIV-1; 1.80A {Homo sapiens} Back     alignment and structure
>3frt_A Charged multivesicular BODY protein 3; ESCRT, ESCRT-111, CHMP, IST1, coiled coil, cytoplasm, lipoprotein, membrane, myristate, phosphoprotein; 4.00A {Homo sapiens} Back     alignment and structure
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori} Back     alignment and structure
>2gd5_A Charged multivesicular BODY protein 3; CHMP3, ESCRT-III, protein transport; 2.80A {Homo sapiens} PDB: 3frv_A Back     alignment and structure
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A Back     alignment and structure
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Back     alignment and structure
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Back     alignment and structure
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A* Back     alignment and structure
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Back     alignment and structure
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A* Back     alignment and structure
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Back     alignment and structure
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens} Back     alignment and structure
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A Back     alignment and structure
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus} Back     alignment and structure
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A Back     alignment and structure
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G* Back     alignment and structure
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A Back     alignment and structure
>3ajw_A Flagellar FLIJ protein; flagellum, type III secretion, coiled-coil, protein transpor; 2.10A {Salmonella typhimurium} Back     alignment and structure
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori} Back     alignment and structure
>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A Back     alignment and structure
>4fm3_A Uncharacterized hypothetical protein; PF14346 family protein, DUF4398, structural genomics, joint for structural genomics, JCSG; HET: PG4; 2.47A {Pseudomonas aeruginosa} Back     alignment and structure
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G* Back     alignment and structure
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus} Back     alignment and structure
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A Back     alignment and structure
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B* Back     alignment and structure
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Back     alignment and structure
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus} Back     alignment and structure
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus} Back     alignment and structure
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Back     alignment and structure
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1 Back     alignment and structure
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00