Citrus Sinensis ID: 019861

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330----
Protein Sequence
MATIVSSSSFFSVSLPGRLGNSRRCSVKPNPSPIFIRKFVAKIRASSTAFVETKPSEPSFVENEASTSKNVLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSGVGTHFDMTAASGSKDYGELMSPATEFFRMPFMSFIYERGWRQNFVWGGFPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKDSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLCRACGLVDFKCTRNRGFVMFTATKPSQN
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEccccccEEcccccccccccccccccccccccHHHHHHHccHHHHHHHHHHHHHHHcccccccHHHHHHHHHcccccccccEEEEcccccHHHHHHHHHccccEEEEEEccHHHHHHHHHHHcccccccccccccEEHHHHHcccccHHHHHHHHHHHcccccEEEEEEEccccccccHHHHHHHHHHHHHcccccccccHHHHHHHHHHccccEEEEEEEccEEEEEEEccccc
Secondary Structure Prediction (SSPRO)
cccEEEccccccccccccccccccccccccccccEEcccccHEEcccccccccccccccccccccccccccccccccccHHHcccccccccHHHcccccEcccccccccccccEEEEEEccccccccccccHHHHHHHcHHHHHHHHHcHHHHHHHccccccHHHHHHHHHHHccccccEEEEEccccHHHHHHHHHcccccEEEEEEccHHHHHHHHHHHHcccccccccHHHHHHHHHHHccccHHHHHHHHHHHHccccEEEEEEEEcccccccHHHHHHHHHHHHHcccccccccHHHHHHHHHHccccEEEEEEccEEEEEEEEccccc
Coil and Loop (DISEMBL)
mativssssffsvslpgrlgnsrrcsvkpnpspiFIRKFVAKIRASStafvetkpsepsfveneastsknvlacpicykpltwigdsslsiesaagsslqcntckktysgvgthfdmtaasgskdygelmspateffrmpFMSFIYErgwrqnfvwggfpgpeKEFELMKGYlkpvlggniidascgsglfsRIFAKSGLFSLVVALDYSENMLKQCYEFVQqesnfpkdsidaVHAGAaihcwsspstgvaeisrvlrpggvfvgttyivdgpfnlipfSRLLRQNMMQISGSYTFLSEREIEDLCRAcglvdfkctrnrgfvmftatkpsqn
Flexible Loop (DISEMBL)
mativssssffsvslpgrlgnsrrcsvkpnpspiFIRKFVAKIRASSTafvetkpsepsfveneastsknvlACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSGVGTHFDMTAASGSKDYGELMSPATEFFRMPFMSFIYERGWRQNFVWGGFPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKDSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLCRACGLVDFKCTRNRGFVMFTATKPSQN
Low Complexity Region (SEG)
MATIvssssffsvsLPGRLGNSRRCSVKPNPSPIFIRKFVAKIRASSTAFVETKPSEPSFVENEASTSKNVLACPICYKPLTWIGDsslsiesaagsslQCNTCKKTYSGVGTHFDMTAASGSKDYGELMSPATEFFRMPFMSFIYERGWRQNFVWGGFPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKDSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLCRACGLVDFKCTRNRGFVMFTATKPSQN
Disordered region (IsUnstruct)
********************************PIFIRKFVAKIRASSTAF*******************NVLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSGVGTHFDMTAASGSKDYGELMSPATEFFRMPFMSFIYERGWRQNFVWGGFPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKDSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLCRACGLVDFKCTRNRGFVMFT*******
Disordered Region (DISOPRED)
***********************************************************************LACPICYKPLTWIGD*******AAGSSLQCNTCKKTYSGVGTHFDMTAA**************EFFRMPFMSFIYERGWRQNFVWGGFPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKDSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLCRACGLVDFKCTRNRGFVMFTATKP***
Disordered Region (DISEMBL)
MATIVSSSSFFSVSLPGRLGNSRRCSVKPNPSPIFIRKFVAKIRAS*********************SKNVLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSGVGTHFDMTAASGSKDYGELMSPATEFFRMPFMSFIYERGWRQNFVWGGFPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKDSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLCRACGLVDFKCTRNRGFVMFTATKPSQN
Disordered Region (DISPRO)
**********FSVSLPGR***SRRCSVKPNPSPIFIRKFVAKIRASS*AF*******************NVLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSGVGTHFDMTAASGSKDYGELMSPATEFFRMPFMSFIYERGWRQNFVWGGFPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKDSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLCRACGLVDFKCTRNRGFVMFTATK****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MATIVSSSSFFSVSLPGRLGNSRRCSVKPNPSPIFIRKFVAKIRASSTAFVETKPSEPSFVENEASTSKNVLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSGVGTHFDMTAASGSKDYGELMSPATEFFRMPFMSFIYERGWRQNFVWGGFPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKDSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLCRACGLVDFKCTRNRGFVMFTATKPSQN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	334	2.2.26 [Sep-21-2011]
Q8LBV4	355	Uncharacterized methyltra	yes	no	0.790	0.743	0.639	1e-107
Q0WPT7	352	Uncharacterized methyltra	no	no	0.772	0.732	0.464	6e-71
P65349	243	Uncharacterized methyltra	yes	no	0.269	0.370	0.306	3e-05
P65348	243	Uncharacterized methyltra	yes	no	0.269	0.370	0.306	3e-05
A9WRT1	237	Demethylmenaquinone methy	no	no	0.323	0.455	0.314	8e-05
D2T333	262	Malonyl-CoA O-methyltrans	yes	no	0.299	0.381	0.297	0.0001
A0AK43	236	Demethylmenaquinone methy	yes	no	0.254	0.360	0.33	0.0003
B0RCZ0	245	Demethylmenaquinone methy	yes	no	0.272	0.371	0.333	0.0003
P67055	237	Demethylmenaquinone methy	yes	no	0.254	0.358	0.33	0.0003
Q71Y84	237	Demethylmenaquinone methy	yes	no	0.254	0.358	0.33	0.0003

>sp|Q8LBV4|Y1814_ARATH Uncharacterized methyltransferase At1g78140, chloroplastic OS=Arabidopsis thaliana GN=At1g78140 PE=1 SV=1

 Score =  387 bits (993), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 181/283 (63%), Positives = 215/283 (75%), Gaps = 19/283 (6%)

Query: 69  KNVLACPICYKPLTWIGDSSLSIESAA-GSSLQCNTCKKTYSGVGTHFDMTAASGSKDYG 127
           K +LACPICY  L WI   +  IESAA G  +QCNTCK++YSG  TH D+  ASGSK Y 
Sbjct: 73  KKILACPICYNSLAWISQPNGLIESAASGIQVQCNTCKRSYSGNETHLDLAVASGSKRYS 132

Query: 128 ELMSPATEFFRMPFMSFIYERGWRQNFVWGGFPGPEKEFELMKGYLKPVLGGNIIDASCG 187
           E M  +TE FR P +SF+YERGWRQNF+WGGFPGPEKEFE+ K YLKPVLGGNIIDASCG
Sbjct: 133 EPMPLSTELFRTPLVSFLYERGWRQNFIWGGFPGPEKEFEMAKAYLKPVLGGNIIDASCG 192

Query: 188 SGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKD----------------- 230
           SG+FSR+F +S LFSLV+ALDYSENML+QCYE + +E NFP                   
Sbjct: 193 SGMFSRLFTRSDLFSLVIALDYSENMLRQCYELLNKEENFPNKEKLVLVRADIARLPFLS 252

Query: 231 -SIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMM 289
            S+DAVHAGAA+HCW SPS+ VAEISRVLRPGGVFV TT+I DGPF+ IPF + LRQ +M
Sbjct: 253 GSVDAVHAGAALHCWPSPSSAVAEISRVLRPGGVFVATTFIYDGPFSFIPFLKNLRQEIM 312

Query: 290 QISGSYTFLSEREIEDLCRACGLVDFKCTRNRGFVMFTATKPS 332
           + SGS+ FL+ERE+ED+C+ACGLV+F   RN  F+M +ATKPS
Sbjct: 313 RYSGSHIFLNERELEDICKACGLVNFTRVRNGPFIMLSATKPS 355

Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: -

>sp|Q0WPT7|Y2104_ARATH Uncharacterized methyltransferase At2g41040, chloroplastic OS=Arabidopsis thaliana GN=At2g41040 PE=1 SV=1

 Score =  268 bits (684), Expect = 6e-71,   Method: Compositional matrix adjust.
 Identities = 130/280 (46%), Positives = 176/280 (62%), Gaps = 22/280 (7%)

Query: 70  NVLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSGVGTHFDMTAASGSKDYGEL 129
            V ACP+CY+PL   G S +++++   S  +C  C KTYS    + D+T  +   DY E+
Sbjct: 77  QVFACPVCYEPLMRKGPSGINLQAIYRSGFKCGQCNKTYSSKDEYLDLTVTADLDDYNEV 136

Query: 130 MSPATEFFRMPFMSFIYERGWRQNFVWGGFPGPEKEFELMKGYLKPVLGGNIIDASCGSG 189
               TE FR P +SF+YERGWRQ F   GFPGP++EF + + Y K   GG ++D SCGSG
Sbjct: 137 KPITTELFRSPLVSFLYERGWRQAFKRSGFPGPDEEFRMAEEYFKEAEGGLLVDVSCGSG 196

Query: 190 LFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESN------------------FPKDS 231
           LFSR FA+SG +S V+ALDYSENML+QC EF++ ++                   FP  S
Sbjct: 197 LFSRKFAQSGKYSGVIALDYSENMLRQCKEFIKNDNTFDNSTNIAVVRADVSRLPFPSGS 256

Query: 232 IDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQI 291
           +DAVHAGAA+HCW SP+  +AEI RVLR GGVFVGTT++   P    P+  ++R    +I
Sbjct: 257 VDAVHAGAALHCWPSPTNAIAEICRVLRSGGVFVGTTFLRYSPST--PW--IIRPFQSRI 312

Query: 292 SGSYTFLSEREIEDLCRACGLVDFKCTRNRGFVMFTATKP 331
             SY +L + EI+D+C +CGL D++      F+MFTA KP
Sbjct: 313 LQSYNYLMQDEIKDVCTSCGLTDYEDYIQDSFIMFTARKP 352

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|P65349|Y3374_MYCBO Uncharacterized methyltransferase Mb3374 OS=Mycobacterium bovis (strain ATCC BAA-935 / AF2122/97) GN=Mb3374 PE=3 SV=1

 Score = 50.1 bits (118), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 30/98 (30%), Positives = 43/98 (43%), Gaps = 8/98 (8%)

Query: 172 YLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVV-----ALDYSENMLKQCYEFVQQESN 226
           +L P     ++D   G+G  +    + GL  + V      LD     L Q    +     
Sbjct: 33  WLLPAAARRVLDLGAGTGKLTTRLVERGLDVVAVDPIPEMLDVLRAALPQTVALLGTAEE 92

Query: 227 FPKD--SIDAVHAGAAIHCWSSPSTGVAEISRVLRPGG 262
            P D  S+DAV    A H W  P+  + E++RVLRPGG
Sbjct: 93  IPLDDNSVDAVLVAQAWH-WVDPARAIPEVARVLRPGG 129

Mycobacterium bovis (taxid: 1765)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|P65348|Y3342_MYCTU Uncharacterized methyltransferase Rv3342/MT3445 OS=Mycobacterium tuberculosis GN=Rv3342 PE=3 SV=1

 Score = 50.1 bits (118), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 30/98 (30%), Positives = 43/98 (43%), Gaps = 8/98 (8%)

Query: 172 YLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVV-----ALDYSENMLKQCYEFVQQESN 226
           +L P     ++D   G+G  +    + GL  + V      LD     L Q    +     
Sbjct: 33  WLLPAAARRVLDLGAGTGKLTTRLVERGLDVVAVDPIPEMLDVLRAALPQTVALLGTAEE 92

Query: 227 FPKD--SIDAVHAGAAIHCWSSPSTGVAEISRVLRPGG 262
            P D  S+DAV    A H W  P+  + E++RVLRPGG
Sbjct: 93  IPLDDNSVDAVLVAQAWH-WVDPARAIPEVARVLRPGG 129

Mycobacterium tuberculosis (taxid: 1773)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|A9WRT1|UBIE_RENSM Demethylmenaquinone methyltransferase OS=Renibacterium salmoninarum (strain ATCC 33209 / DSM 20767 / JCM 11484 / NBRC 15589 / NCIMB 2235) GN=ubiE PE=3 SV=1

 Score = 48.1 bits (113), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 38/121 (31%), Positives = 59/121 (48%), Gaps = 13/121 (10%)

Query: 176 VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLK------QCYEFVQQESN--- 226
           V G  ++D + G+G  S  +A +GL   VVALD+S  MLK         +F+  ++    
Sbjct: 50  VPGQRVLDVAAGTGTSSEPYADAGLD--VVALDFSLGMLKVGKRRRPDIDFIAGDATALP 107

Query: 227 FPKDSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGT--TYIVDGPFNLIPFSRLL 284
           F  +S DAV     +   + P   +AE+ RV +PGG  V    ++   GPF  +    L+
Sbjct: 108 FADNSFDAVTISFGLRNVNEPKKALAEMLRVTKPGGKLVVAEFSHPTFGPFRTVYTEYLM 167

Query: 285 R 285
           R
Sbjct: 168 R 168

Methyltransferase required for the conversion of demethylmenaquinone (DMKH2) to menaquinone (MKH2).

Renibacterium salmoninarum (strain ATCC 33209 / DSM 20767 / JCM 11484 / NBRC 15589 / NCIMB 2235) (taxid: 288705)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 6

EC: 3

>sp|D2T333|BIOC_ERWP6 Malonyl-CoA O-methyltransferase BioC OS=Erwinia pyrifoliae (strain DSM 12163 / CIP 106111 / Ep16/96) GN=bioC PE=3 SV=1

 Score = 47.8 bits (112), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 33/111 (29%), Positives = 51/111 (45%), Gaps = 11/111 (9%)

Query: 167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESN 226
           E +  + +P     ++DA CG+G FS+ +   G +  V ALD SE ML+   E    +  
Sbjct: 43  ERLLEHARPGNALRVLDAGCGTGWFSQRWRAGGHW--VTALDLSEKMLQHARENQAADCY 100

Query: 227 FPKD---------SIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTT 268
            P D         S D   +  A+   SS    + E+ RV +PGG  + +T
Sbjct: 101 LPGDIEALPFADASFDRCWSNLAVQWCSSLPLALRELRRVTKPGGQVLFST 151

Converts the free carboxyl group of a malonyl-thioester to its methyl ester by transfer of a methyl group from S-adenosyl-L-methionine (SAM). It allows to synthesize pimeloyl-ACP via the fatty acid synthetic pathway.

Erwinia pyrifoliae (strain DSM 12163 / CIP 106111 / Ep16/96) (taxid: 644651)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 9

EC: 7

>sp|A0AK43|UBIE_LISW6 Demethylmenaquinone methyltransferase OS=Listeria welshimeri serovar 6b (strain ATCC 35897 / DSM 20650 / SLCC5334) GN=ubiE PE=3 SV=1

 Score = 46.2 bits (108), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 33/100 (33%), Positives = 47/100 (47%), Gaps = 15/100 (15%)

Query: 178 GGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQQ------------- 223
           G N++D  CG+  +S + A+  G    V  LD+SENMLK   E V++             
Sbjct: 48  GTNVLDVCCGTADWSIMMAEEIGPEGHVTGLDFSENMLKVGREKVKEADLHNVELIHGNA 107

Query: 224 -ESNFPKDSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGG 262
            E  FP +S D V  G  +         + E+ RVL+PGG
Sbjct: 108 MELPFPDNSFDYVTIGFGLRNVPDYMQVLREMYRVLKPGG 147

Methyltransferase required for the conversion of demethylmenaquinone (DMKH2) to menaquinone (MKH2).

Listeria welshimeri serovar 6b (strain ATCC 35897 / DSM 20650 / SLCC5334) (taxid: 386043)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 6

EC: 3

>sp|B0RCZ0|UBIE_CLAMS Demethylmenaquinone methyltransferase OS=Clavibacter michiganensis subsp. sepedonicus (strain ATCC 33113 / JCM 9667) GN=ubiE PE=3 SV=1

 Score = 46.2 bits (108), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 35/105 (33%), Positives = 50/105 (47%), Gaps = 14/105 (13%)

Query: 173 LKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLK---------QCYEFVQQ 223
           + PV G  I+D + G+G  +   A +   + VVA D+SE ML+            EFV  
Sbjct: 47  VAPVAGERILDLAAGTG--TSSAALAASGAHVVAADFSEGMLEVGRRRLAGDDRVEFVHA 104

Query: 224 ESN---FPKDSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFV 265
           ++    F  DS DAV     +     P  G+ E+ RVL+PGG  V
Sbjct: 105 DATDLPFDDDSFDAVTISFGLRNVVEPRKGLDELLRVLKPGGRIV 149

Methyltransferase required for the conversion of demethylmenaquinone (DMKH2) to menaquinone (MKH2).

Clavibacter michiganensis subsp. sepedonicus (strain ATCC 33113 / JCM 9667) (taxid: 31964)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 6

EC: 3

>sp|P67055|UBIE_LISMO Demethylmenaquinone methyltransferase OS=Listeria monocytogenes serovar 1/2a (strain ATCC BAA-679 / EGD-e) GN=ubiE PE=3 SV=1

 Score = 46.2 bits (108), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 33/100 (33%), Positives = 47/100 (47%), Gaps = 15/100 (15%)

Query: 178 GGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQQ------------- 223
           G N++D  CG+  +S + A+  G    V  LD+SENMLK   E V++             
Sbjct: 48  GTNVLDVCCGTADWSIMMAEEIGPEGHVTGLDFSENMLKVGREKVKEADLHNVELIHGNA 107

Query: 224 -ESNFPKDSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGG 262
            E  FP +S D V  G  +         + E+ RVL+PGG
Sbjct: 108 MELPFPDNSFDYVTIGFGLRNVPDYMQVLREMYRVLKPGG 147

Methyltransferase required for the conversion of demethylmenaquinone (DMKH2) to menaquinone (MKH2).

Listeria monocytogenes serovar 1/2a (strain ATCC BAA-679 / EGD-e) (taxid: 169963)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 6

EC: 3

>sp|Q71Y84|UBIE_LISMF Demethylmenaquinone methyltransferase OS=Listeria monocytogenes serotype 4b (strain F2365) GN=ubiE PE=3 SV=1

 Score = 46.2 bits (108), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 33/100 (33%), Positives = 47/100 (47%), Gaps = 15/100 (15%)

Query: 178 GGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQQ------------- 223
           G N++D  CG+  +S + A+  G    V  LD+SENMLK   E V++             
Sbjct: 48  GTNVLDVCCGTADWSIMMAEEIGPEGHVTGLDFSENMLKVGREKVKEADLHNVELIHGNA 107

Query: 224 -ESNFPKDSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGG 262
            E  FP +S D V  G  +         + E+ RVL+PGG
Sbjct: 108 MELPFPDNSFDYVTIGFGLRNVPDYMQVLREMYRVLKPGG 147

Methyltransferase required for the conversion of demethylmenaquinone (DMKH2) to menaquinone (MKH2).

Listeria monocytogenes serotype 4b (strain F2365) (taxid: 265669)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 6

EC: 3

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	334
225459328	350	PREDICTED: uncharacterized methyltransfe	0.985	0.94	0.617	1e-119
224066941	293	predicted protein [Populus trichocarpa]	0.826	0.941	0.692	1e-118
388517893	352	unknown [Lotus japonicus]	0.892	0.846	0.658	1e-118
356508108	352	PREDICTED: uncharacterized methyltransfe	0.907	0.860	0.643	1e-118
255545696	351	S-adenosylmethionine-dependent methyltra	0.970	0.923	0.597	1e-114
297842589	352	predicted protein [Arabidopsis lyrata su	0.820	0.778	0.639	1e-106
18411840	355	S-adenosyl-L-methionine-dependent methyl	0.790	0.743	0.639	1e-105
449437246	313	PREDICTED: uncharacterized methyltransfe	0.808	0.862	0.612	9e-99
449502868	376	PREDICTED: uncharacterized methyltransfe	0.808	0.718	0.612	2e-98
224082138	244	predicted protein [Populus trichocarpa]	0.655	0.897	0.721	8e-96

>gi|225459328|ref|XP_002285799.1| PREDICTED: uncharacterized methyltransferase At1g78140, chloroplastic [Vitis vinifera] gi|302141946|emb|CBI19149.3| unnamed protein product [Vitis vinifera]

 Score =  435 bits (1118), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 218/353 (61%), Positives = 261/353 (73%), Gaps = 24/353 (6%)

Query: 1   MATIVSSSSFFSVSLPGRLGNSRRCSVKPNPSPIFIR-KFVAKIRASST---AFVETKPS 56
           MA +++   F +V +PG+LG  R    KP  SP  +   F AK+RASST     VETKP 
Sbjct: 1   MARVIAK--FPTVFVPGQLGQPRDPFFKPLFSPPTVNFVFAAKLRASSTPAAVVVETKP- 57

Query: 57  EPSFVENEASTSKNVLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSGVGTHFD 116
           +P  VE E S  K++LACPICY+P TW GD  LS+ES  GSS  C++CKK   G  TH D
Sbjct: 58  DPISVEKEISIGKSILACPICYQPFTWNGDLGLSVESMPGSSFHCSSCKKACFGNETHLD 117

Query: 117 MTAASGSKDYGELMSPATEFFRMPFMSFIYERGWRQNFVWGGFPGPEKEFELMKGYLKPV 176
           +T A+G+K+Y E M  ATE FR P +SF+YERGWRQNF+WGGFPG EKEFEL KGYLKPV
Sbjct: 118 LTVATGAKEYDESMPAATEIFRTPLISFLYERGWRQNFIWGGFPGLEKEFELAKGYLKPV 177

Query: 177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKD------ 230
           LGG I+DASCGSGLFSR FAKSGLFSLVVALD+SENML+QCYEF++QE  FPK+      
Sbjct: 178 LGGTIVDASCGSGLFSRTFAKSGLFSLVVALDFSENMLRQCYEFIKQEEGFPKENILLVR 237

Query: 231 -----------SIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIP 279
                      S+DAVHAGAA+HCW SPS  VAEISRVLRPGGVFV TTY++DGPF+++P
Sbjct: 238 ADISRLPFASSSVDAVHAGAALHCWPSPSIAVAEISRVLRPGGVFVATTYLLDGPFSVLP 297

Query: 280 FSRLLRQNMMQISGSYTFLSEREIEDLCRACGLVDFKCTRNRGFVMFTATKPS 332
           F + LRQNM++++GS+ FLSERE+EDLC ACGL  F C RN  FVM +ATKPS
Sbjct: 298 FLKTLRQNMVRVAGSHAFLSERELEDLCTACGLGGFTCVRNGRFVMISATKPS 350

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224066941|ref|XP_002302290.1| predicted protein [Populus trichocarpa] gi|222844016|gb|EEE81563.1| predicted protein [Populus trichocarpa]

 Score =  432 bits (1111), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 203/293 (69%), Positives = 237/293 (80%), Gaps = 17/293 (5%)

Query: 57  EPSFVENEASTSKNVLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSGVGTHFD 116
           +P  VE + S+SKN+LACP+CY+P+T IG + LS++SA GSSLQC+TCKKTYSG  TH +
Sbjct: 1   DPVVVEKDVSSSKNILACPVCYEPVTLIGANVLSVDSARGSSLQCSTCKKTYSGKETHLE 60

Query: 117 MTAASGSKDYGELMSPATEFFRMPFMSFIYERGWRQNFVWGGFPGPEKEFELMKGYLKPV 176
           +T ASGSK Y + M  ATEFFR PF+SF+YERGWRQNFVWGGFPGPE EFE+MK YLKPV
Sbjct: 61  LTVASGSKAYDDAMPMATEFFRTPFISFLYERGWRQNFVWGGFPGPEMEFEMMKDYLKPV 120

Query: 177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKD------ 230
           LGGNI+DASCGSGLFSR+FAKSGLFSLV ALDYSENMLKQCYEF++QE NFPK+      
Sbjct: 121 LGGNILDASCGSGLFSRLFAKSGLFSLVTALDYSENMLKQCYEFIKQEENFPKENLILVR 180

Query: 231 -----------SIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIP 279
                      S+DAVHAGAAIHCW SPS  VAE+SRVLRPGGVFV TTYI+DGPF+ IP
Sbjct: 181 ADIARLPFVSGSLDAVHAGAAIHCWPSPSAAVAEVSRVLRPGGVFVATTYILDGPFSFIP 240

Query: 280 FSRLLRQNMMQISGSYTFLSEREIEDLCRACGLVDFKCTRNRGFVMFTATKPS 332
           F + + Q   Q SG+  FLSERE+E +CRACGLV+F CTRNR F+MF+ATKPS
Sbjct: 241 FLKPISQRFTQASGNNFFLSERELEAVCRACGLVNFTCTRNRQFIMFSATKPS 293

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388517893|gb|AFK47008.1| unknown [Lotus japonicus]

 Score =  431 bits (1109), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 210/319 (65%), Positives = 244/319 (76%), Gaps = 21/319 (6%)

Query: 34  IFIRKFVAKIRASSTA--FVETKPSEPSFVEN-EASTSKNVLACPICYKPLTWIGDSSLS 90
           +F  KF  ++RA STA   V+ KP++   V++ E   S N LACP+C+  LTW GDS LS
Sbjct: 33  VFPSKFPLQLRAFSTASPIVDPKPTDSIVVDDKEVRRSSNSLACPVCFDSLTWTGDSGLS 92

Query: 91  IESAAGSSLQCNTCKKTYSGVGTHFDMTAASGSKDYGELMSPATEFFRMPFMSFIYERGW 150
           ++S   SSLQC+TC+KTY G  TH D+TA SG+K+YG+LM  +TE FR+P +SF+YERGW
Sbjct: 93  VDSIPVSSLQCSTCQKTYVGNQTHLDLTATSGAKNYGDLMPASTELFRVPLISFLYERGW 152

Query: 151 RQNF-VWGGFPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDY 209
           RQ F VWGGFPGPEKEFELMKG+L PVLGGNIIDASC SGLFSR+FAKSGLFSLVVALDY
Sbjct: 153 RQTFSVWGGFPGPEKEFELMKGFLNPVLGGNIIDASCASGLFSRLFAKSGLFSLVVALDY 212

Query: 210 SENMLKQCYEFVQQESNFPKD-----------------SIDAVHAGAAIHCWSSPSTGVA 252
           SENML QCYEF+QQE NFPK+                 S+DAVHAGAA+HCW SPS  VA
Sbjct: 213 SENMLAQCYEFIQQEDNFPKENFILVRADIARLPFVTSSVDAVHAGAALHCWPSPSAVVA 272

Query: 253 EISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLCRACGL 312
           EISRVLRPGGVFV TTYI+DGPF  +PF   +RQN+ Q SGSY FLSERE+EDLCRACGL
Sbjct: 273 EISRVLRPGGVFVATTYILDGPFTFVPFLSTVRQNIRQASGSYIFLSERELEDLCRACGL 332

Query: 313 VDFKCTRNRGFVMFTATKP 331
           V FKC RN  FVM +A KP
Sbjct: 333 VGFKCIRNGPFVMISAAKP 351

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356508108|ref|XP_003522802.1| PREDICTED: uncharacterized methyltransferase At1g78140, chloroplastic-like [Glycine max]

 Score =  431 bits (1108), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 213/331 (64%), Positives = 251/331 (75%), Gaps = 28/331 (8%)

Query: 30  NPSPIFIRK-FVAKI----RASSTAFV--ETKPSEPSFV---ENEASTSKNVLACPICYK 79
           +P+ +F R  F AK+    RASST+F+  ET P E + V   ++ +S S N LACP+CY 
Sbjct: 22  HPTRLFSRAAFTAKLPLQFRASSTSFIDTETNPRESNVVVVEKDVSSRSSNSLACPVCYD 81

Query: 80  PLTWIGDSSLSIESAAGSSLQCNTCKKTYSGVGTHFDMTAASGSKDYGELMSPATEFFRM 139
            LTW GD   S+++  GSS QC+TC+KTY G  TH D+TA  G+K YGE M  +TE FR+
Sbjct: 82  SLTWNGDPGFSVDTITGSSFQCSTCQKTYIGNQTHLDLTATGGAKSYGESMPASTELFRV 141

Query: 140 PFMSFIYERGWRQNF-VWGGFPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKS 198
           P +SF+YERGWRQ F VWGGFPGPEKEFELMKG+LKP+LGGNIIDASC SGLFSR+FAKS
Sbjct: 142 PLISFLYERGWRQTFSVWGGFPGPEKEFELMKGFLKPILGGNIIDASCASGLFSRLFAKS 201

Query: 199 GLFSLVVALDYSENMLKQCYEFVQQESNFPKD-----------------SIDAVHAGAAI 241
           GLFS +VALDYSENML+QCYEF+QQE NFPK+                 S+DAVHAGAA+
Sbjct: 202 GLFSFIVALDYSENMLQQCYEFIQQEENFPKENFILVRADISRLPFVSSSVDAVHAGAAL 261

Query: 242 HCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSER 301
           HCW SP   VAEISRVLRPGGVFV TTYI+DGPF++IPF   LRQN+ Q+SGSY FLSER
Sbjct: 262 HCWPSPLAAVAEISRVLRPGGVFVATTYILDGPFSVIPFLSSLRQNVRQVSGSYIFLSER 321

Query: 302 EIEDLCRACGLVDFKCTRNRGFVMFTATKPS 332
           E+EDLCRACGLV FKC RN  FVM +ATKPS
Sbjct: 322 ELEDLCRACGLVGFKCIRNGLFVMISATKPS 352

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255545696|ref|XP_002513908.1| S-adenosylmethionine-dependent methyltransferase, putative [Ricinus communis] gi|223546994|gb|EEF48491.1| S-adenosylmethionine-dependent methyltransferase, putative [Ricinus communis]

 Score =  418 bits (1074), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 209/350 (59%), Positives = 256/350 (73%), Gaps = 26/350 (7%)

Query: 7   SSSFFSVSLPGRLGNSRRCSVKPNPSPIFIR-KFVAKIRASST-----AFVETKPSEPSF 60
           +++  S  LP + GNSR+    P   PIF R  F AK+RASS+     A +E+KP++   
Sbjct: 2   AAATISYYLPNQFGNSRQFLFNPYTRPIFKRSNFAAKVRASSSTSTSTALLESKPADAVV 61

Query: 61  VENE--ASTSKNVLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSGVGTHFDMT 118
           VE E  + +S N++ACPICY+PL+ IGD  LS++     SL+C +CKK Y G  TH ++T
Sbjct: 62  VEKEEVSRSSTNIIACPICYEPLSLIGDRLLSVD-IGECSLRCGSCKKIYYGKETHIELT 120

Query: 119 AASGSKDYGELMSPATEFFRMPFMSFIYERGWRQNFVWGGFPGPEKEFELMKGYLKPVLG 178
            ASG+  Y + M  ATEFFR+  +SF+YERGWRQNF+WGGFPGPEKEFEL+K YLKPVLG
Sbjct: 121 VASGASKYDDAMPLATEFFRLSLISFLYERGWRQNFIWGGFPGPEKEFELIKDYLKPVLG 180

Query: 179 GNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKD-------- 230
           GNIIDASCGSGLFSR+FAKSGLFSLVVALDYSENML+QCY+F++QE NFP +        
Sbjct: 181 GNIIDASCGSGLFSRLFAKSGLFSLVVALDYSENMLQQCYDFIKQEENFPTENLISVRAD 240

Query: 231 ---------SIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFS 281
                    S+DAVHAGAAIHCW SPS  VAEISRVLRPGGVFV +T+I+DGPF+ +P  
Sbjct: 241 ISRLPFLFGSVDAVHAGAAIHCWPSPSAAVAEISRVLRPGGVFVASTFILDGPFSFVPLM 300

Query: 282 RLLRQNMMQISGSYTFLSEREIEDLCRACGLVDFKCTRNRGFVMFTATKP 331
             LRQN+ QISGS  FL E E+ED+CRACGLV F   R+R FVMF+A KP
Sbjct: 301 GPLRQNIAQISGSQIFLREYELEDICRACGLVGFTAIRDRQFVMFSARKP 350

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297842589|ref|XP_002889176.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297335017|gb|EFH65435.1| predicted protein [Arabidopsis lyrata subsp. lyrata]

 Score =  392 bits (1006), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 188/294 (63%), Positives = 221/294 (75%), Gaps = 20/294 (6%)

Query: 59  SFVENEAST-SKNVLACPICYKPLTWIGDSSLSIESA-AGSSLQCNTCKKTYSGVGTHFD 116
           S +E E +   K VLACPICY  L WI   +  IESA +G+ LQCNTCK++YSG  TH D
Sbjct: 59  SVIEKEKTRGEKKVLACPICYNSLAWISQPNGLIESATSGTQLQCNTCKRSYSGNETHLD 118

Query: 117 MTAASGSKDYGELMSPATEFFRMPFMSFIYERGWRQNFVWGGFPGPEKEFELMKGYLKPV 176
           +  ASGSK Y E M  +TE FR P +SF+YERGWRQNF+WGGFPGPEKEFE+ K YLKPV
Sbjct: 119 LAVASGSKTYSEPMPLSTELFRTPLVSFLYERGWRQNFIWGGFPGPEKEFEMAKDYLKPV 178

Query: 177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKD------ 230
           LGGNIIDASCGSG+FSR+FA+S LFSLV+ALDYSENML+QCYE + QE NFP        
Sbjct: 179 LGGNIIDASCGSGMFSRLFARSELFSLVIALDYSENMLRQCYELLNQEENFPNREKLVLV 238

Query: 231 ------------SIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLI 278
                       S+DAVHAGAA+HCW SPS+ VAEISRVLRPGGVFV TT+I DGPF+ I
Sbjct: 239 RADIARLPFLSGSVDAVHAGAALHCWPSPSSAVAEISRVLRPGGVFVATTFIYDGPFSFI 298

Query: 279 PFSRLLRQNMMQISGSYTFLSEREIEDLCRACGLVDFKCTRNRGFVMFTATKPS 332
           PF + LRQ +M+ SGS+ FL+ERE+EDLC+ACGLV F   RN  F+M +ATKPS
Sbjct: 299 PFLKNLRQELMRYSGSHMFLNERELEDLCKACGLVGFTRVRNGPFIMLSATKPS 352

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18411840|ref|NP_565170.1| S-adenosyl-L-methionine-dependent methyltransferase-like protein [Arabidopsis thaliana] gi|75329938|sp|Q8LBV4.1|Y1814_ARATH RecName: Full=Uncharacterized methyltransferase At1g78140, chloroplastic; Flags: Precursor gi|21592590|gb|AAM64539.1| unknown [Arabidopsis thaliana] gi|28393453|gb|AAO42148.1| unknown protein [Arabidopsis thaliana] gi|28827348|gb|AAO50518.1| unknown protein [Arabidopsis thaliana] gi|332197950|gb|AEE36071.1| S-adenosyl-L-methionine-dependent methyltransferase-like protein [Arabidopsis thaliana]

 Score =  387 bits (993), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 181/283 (63%), Positives = 215/283 (75%), Gaps = 19/283 (6%)

Query: 69  KNVLACPICYKPLTWIGDSSLSIESAA-GSSLQCNTCKKTYSGVGTHFDMTAASGSKDYG 127
           K +LACPICY  L WI   +  IESAA G  +QCNTCK++YSG  TH D+  ASGSK Y 
Sbjct: 73  KKILACPICYNSLAWISQPNGLIESAASGIQVQCNTCKRSYSGNETHLDLAVASGSKRYS 132

Query: 128 ELMSPATEFFRMPFMSFIYERGWRQNFVWGGFPGPEKEFELMKGYLKPVLGGNIIDASCG 187
           E M  +TE FR P +SF+YERGWRQNF+WGGFPGPEKEFE+ K YLKPVLGGNIIDASCG
Sbjct: 133 EPMPLSTELFRTPLVSFLYERGWRQNFIWGGFPGPEKEFEMAKAYLKPVLGGNIIDASCG 192

Query: 188 SGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKD----------------- 230
           SG+FSR+F +S LFSLV+ALDYSENML+QCYE + +E NFP                   
Sbjct: 193 SGMFSRLFTRSDLFSLVIALDYSENMLRQCYELLNKEENFPNKEKLVLVRADIARLPFLS 252

Query: 231 -SIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMM 289
            S+DAVHAGAA+HCW SPS+ VAEISRVLRPGGVFV TT+I DGPF+ IPF + LRQ +M
Sbjct: 253 GSVDAVHAGAALHCWPSPSSAVAEISRVLRPGGVFVATTFIYDGPFSFIPFLKNLRQEIM 312

Query: 290 QISGSYTFLSEREIEDLCRACGLVDFKCTRNRGFVMFTATKPS 332
           + SGS+ FL+ERE+ED+C+ACGLV+F   RN  F+M +ATKPS
Sbjct: 313 RYSGSHIFLNERELEDICKACGLVNFTRVRNGPFIMLSATKPS 355

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449437246|ref|XP_004136403.1| PREDICTED: uncharacterized methyltransferase At1g78140, chloroplastic-like [Cucumis sativus]

 Score =  366 bits (939), Expect = 9e-99,   Method: Compositional matrix adjust.
 Identities = 177/289 (61%), Positives = 216/289 (74%), Gaps = 19/289 (6%)

Query: 62  ENEASTSKNVLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSGVGTHFDMTAAS 121
           +NE +  KN+LAC IC+ PLT    S L +ES  G  L+C TCKK+++G  +H D+T   
Sbjct: 26  DNEDNKIKNILACSICHGPLTAAAGSGLPVESTNGYQLECGTCKKSFTGSESHLDLTITG 85

Query: 122 GSKDYGELMSPATEFFRMPFMSFIYERGWRQNF-VWGGFPGPEKEFELMKGYLKPVLGGN 180
           G+ D GE M  ATE FR   +SF+YERGWRQ+F V  GFPGPEKEFEL+K ++ PVLGG+
Sbjct: 86  GT-DSGESMPAATEIFRTRLVSFLYERGWRQSFSVLLGFPGPEKEFELIKNFITPVLGGS 144

Query: 181 IIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKD---------- 230
           IIDASCGSG+FSRIFAKSGLFS VVALDYSENML+QCYEF++QE NFP +          
Sbjct: 145 IIDASCGSGMFSRIFAKSGLFSSVVALDYSENMLRQCYEFIKQEENFPNERLVLIRADIA 204

Query: 231 -------SIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRL 283
                  S+DAVHAGAA+HCW SPS  VAEISR+LRPGGVFV +T+I+DGP++ +PF R+
Sbjct: 205 RLPFASSSVDAVHAGAALHCWPSPSAAVAEISRILRPGGVFVASTFIMDGPYSFVPFLRI 264

Query: 284 LRQNMMQISGSYTFLSEREIEDLCRACGLVDFKCTRNRGFVMFTATKPS 332
             + + QISGS  FLSERE+E+LC ACGLVDFKC RNR FVM +ATK S
Sbjct: 265 QIEGIQQISGSRIFLSERELEELCTACGLVDFKCLRNRQFVMLSATKCS 313

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449502868|ref|XP_004161765.1| PREDICTED: uncharacterized methyltransferase At1g78140, chloroplastic-like [Cucumis sativus]

 Score =  365 bits (936), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 177/289 (61%), Positives = 216/289 (74%), Gaps = 19/289 (6%)

Query: 62  ENEASTSKNVLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSGVGTHFDMTAAS 121
           +NE +  KN+LAC IC+ PLT    S L +ES  G  L+C TCKK+++G  +H D+T   
Sbjct: 89  DNEDNKIKNILACSICHGPLTAAAGSGLPVESTNGYQLECGTCKKSFTGSESHLDLTITG 148

Query: 122 GSKDYGELMSPATEFFRMPFMSFIYERGWRQNF-VWGGFPGPEKEFELMKGYLKPVLGGN 180
           G+ D GE M  ATE FR   +SF+YERGWRQ+F V  GFPGPEKEFEL+K ++ PVLGG+
Sbjct: 149 GT-DSGESMPAATEIFRTRLVSFLYERGWRQSFSVLLGFPGPEKEFELIKNFITPVLGGS 207

Query: 181 IIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKD---------- 230
           IIDASCGSG+FSRIFAKSGLFS VVALDYSENML+QCYEF++QE NFP +          
Sbjct: 208 IIDASCGSGMFSRIFAKSGLFSSVVALDYSENMLRQCYEFIKQEENFPNERLVLIRADIA 267

Query: 231 -------SIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRL 283
                  S+DAVHAGAA+HCW SPS  VAEISR+LRPGGVFV +T+I+DGP++ +PF R+
Sbjct: 268 RLPFASSSVDAVHAGAALHCWPSPSAAVAEISRILRPGGVFVASTFIMDGPYSFVPFLRI 327

Query: 284 LRQNMMQISGSYTFLSEREIEDLCRACGLVDFKCTRNRGFVMFTATKPS 332
             + + QISGS  FLSERE+E+LC ACGLVDFKC RNR FVM +ATK S
Sbjct: 328 QIEGIQQISGSRIFLSERELEELCTACGLVDFKCLRNRQFVMLSATKCS 376

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224082138|ref|XP_002306578.1| predicted protein [Populus trichocarpa] gi|222856027|gb|EEE93574.1| predicted protein [Populus trichocarpa]

 Score =  356 bits (913), Expect = 8e-96,   Method: Compositional matrix adjust.
 Identities = 171/237 (72%), Positives = 193/237 (81%), Gaps = 18/237 (7%)

Query: 113 THFDMTAASGSKDYGELMSP-ATEFFRMPFMSFIYERGWRQNFVWGGFPGPEKEFELMKG 171
           TH ++T ASGSK YG++  P ATEFFR PFMSF+YERGWRQNFVWGGFPGPEKEFELMK 
Sbjct: 7   THLELTVASGSKGYGDIAMPLATEFFRTPFMSFLYERGWRQNFVWGGFPGPEKEFELMKD 66

Query: 172 YLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKD- 230
           YLKPVLGGNI+DASCGSGLFSR+F KSGLFSLV+ALDYSENML+QCYEF++QE NFPK+ 
Sbjct: 67  YLKPVLGGNILDASCGSGLFSRLFTKSGLFSLVMALDYSENMLQQCYEFIKQEENFPKEN 126

Query: 231 ----------------SIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGP 274
                           S+DAV AGAAIHCW SPS  VAE+SRVLRPGGVFV TTYI+DG 
Sbjct: 127 LILVRADIARLPFISGSLDAVPAGAAIHCWPSPSVAVAEVSRVLRPGGVFVATTYILDGH 186

Query: 275 FNLIPFSRLLRQNMMQISGSYTFLSEREIEDLCRACGLVDFKCTRNRGFVMFTATKP 331
           F+LIPF + + Q   Q+SGS  FLSERE+ED+CRACGLVDF CTRN  FVMF+ATKP
Sbjct: 187 FSLIPFLKPISQRFTQVSGSNIFLSERELEDVCRACGLVDFTCTRNGRFVMFSATKP 243

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	334
TAIR|locus:2194759	355	AT1G78140 [Arabidopsis thalian	0.604	0.569	0.571	1.8e-97
TAIR|locus:2063218	352	AT2G41040 [Arabidopsis thalian	0.781	0.741	0.389	1.1e-46
TIGR_CMR|BA_1462	258	BA_1462 "methyltransferase, Ub	0.290	0.375	0.306	0.00013

TAIR|locus:2194759 AT1G78140 [Arabidopsis thaliana (taxid:3702)]

 Score = 602 (217.0 bits), Expect = 1.8e-97, Sum P(2) = 1.8e-97
 Identities = 120/210 (57%), Positives = 144/210 (68%)

Query:    39 FVAK-IRASSTAF-VETKP-SEPSFV---ENEASTSKNVLACPICYKPLTWIGD-XXXXX 91
             FV++   ASS +  VET   S   FV   +++    K +LACPICY  L WI        
Sbjct:    37 FVSRSAHASSASVSVETNSNSNVDFVIEKKDKNRGEKKILACPICYNSLAWISQPNGLIE 96

Query:    92 XXXXXXXXQCNTCKKTYSGVGTHFDMTAASGSKDYGELMSPATEFFRMPFMSFIYERGWR 151
                     QCNTCK++YSG  TH D+  ASGSK Y E M  +TE FR P +SF+YERGWR
Sbjct:    97 SAASGIQVQCNTCKRSYSGNETHLDLAVASGSKRYSEPMPLSTELFRTPLVSFLYERGWR 156

Query:   152 QNFVWGGFPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSE 211
             QNF+WGGFPGPEKEFE+ K YLKPVLGGNIIDASCGSG+FSR+F +S LFSLV+ALDYSE
Sbjct:   157 QNFIWGGFPGPEKEFEMAKAYLKPVLGGNIIDASCGSGMFSRLFTRSDLFSLVIALDYSE 216

Query:   212 NMLKQCYEFVQQESNFP-KDSIDAVHAGAA 240
             NML+QCYE + +E NFP K+ +  V A  A
Sbjct:   217 NMLRQCYELLNKEENFPNKEKLVLVRADIA 246

GO:0008152 "metabolic process" evidence=IEA

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0010287 "plastoglobule" evidence=IDA

TAIR|locus:2063218 AT2G41040 [Arabidopsis thaliana (taxid:3702)]

 Score = 489 (177.2 bits), Expect = 1.1e-46, P = 1.1e-46
 Identities = 107/275 (38%), Positives = 146/275 (53%)

Query:    71 VLACPICYKPLTWIGDXXXXXXXXXXXXXQCNTCKKTYSGVGTHFDMTAASGSKDYGELM 130
             V ACP+CY+PL   G              +C  C KTYS    + D+T  +   DY E+ 
Sbjct:    78 VFACPVCYEPLMRKGPSGINLQAIYRSGFKCGQCNKTYSSKDEYLDLTVTADLDDYNEVK 137

Query:   131 SPATEFFRMPFMSFIYERGWRQNFVWGGFPGPEKEFELMKGYLKPVLGGNIIDASCGSGL 190
                TE FR P +SF+YERGWRQ F   GFPGP++EF + + Y K   GG ++D SCGSGL
Sbjct:   138 PITTELFRSPLVSFLYERGWRQAFKRSGFPGPDEEFRMAEEYFKEAEGGLLVDVSCGSGL 197

Query:   191 FSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKDS-IDAVHAGAAIHCWSSPST 249
             FSR FA+SG +S V+ALDYSENML+QC EF++ ++ F   + I  V A  +   + S S 
Sbjct:   198 FSRKFAQSGKYSGVIALDYSENMLRQCKEFIKNDNTFDNSTNIAVVRADVSRLPFPSGSV 257

Query:   250 GVAEISRVLR----PGGVFVGTTYIV--DGPFNLIPFSR-------LLRQNMMQISGSYT 296
                     L     P         ++   G F    F R       ++R    +I  SY 
Sbjct:   258 DAVHAGAALHCWPSPTNAIAEICRVLRSGGVFVGTTFLRYSPSTPWIIRPFQSRILQSYN 317

Query:   297 FLSEREIEDLCRACGLVDFKCTRNRGFVMFTATKP 331
             +L + EI+D+C +CGL D++      F+MFTA KP
Sbjct:   318 YLMQDEIKDVCTSCGLTDYEDYIQDSFIMFTARKP 352

GO:0008152 "metabolic process" evidence=IEA

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0010287 "plastoglobule" evidence=IDA

GO:0080167 "response to karrikin" evidence=IEP

TIGR_CMR|BA_1462 BA_1462 "methyltransferase, UbiE/COQ5 family" [Bacillus anthracis str. Ames (taxid:198094)]

 Score = 117 (46.2 bits), Expect = 0.00013, P = 0.00013
 Identities = 34/111 (30%), Positives = 57/111 (51%)

Query:   167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYE------- 219
             E++KG +  +    IID  CG G++++  A  G  S VV LD+S+ +L+   E       
Sbjct:    25 EMIKG-ITNIQNKQIIDIGCGGGIYTKELALMGAKS-VVGLDFSKEILQAAKENCSGFSN 82

Query:   220 --FVQQESN---FPKDSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFV 265
               F+  +++   +P D+ D V + A IH      T + E SR+L+  GV +
Sbjct:    83 ISFIHGDAHSTPYPNDTFDIVISRAVIHHLQDIPTFLREASRILKKNGVLI 133


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.322   0.137   0.427    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      334       311   0.00080  116 3  11 22  0.36    34
                                                     33  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  3
  No. of states in DFA:  609 (65 KB)
  Total size of DFA:  223 KB (2122 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  23.22u 0.10s 23.32t   Elapsed:  00:00:01
  Total cpu time:  23.22u 0.10s 23.32t   Elapsed:  00:00:01
  Start:  Fri May 10 11:05:50 2013   End:  Fri May 10 11:05:51 2013

GO:0008168 "methyltransferase activity" evidence=ISS

GO:0009108 "coenzyme biosynthetic process" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8LBV4	Y1814_ARATH	2, ., 1, ., 1, ., -	0.6395	0.7904	0.7436	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.1.1	0.691

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	334
pfam08241	92	pfam08241, Methyltransf_11, Methyltransferase doma	8e-18
TIGR02072	240	TIGR02072, BioC, biotin biosynthesis protein BioC	2e-14
COG2226	238	COG2226, UbiE, Methylase involved in ubiquinone/me	7e-14
pfam13489	154	pfam13489, Methyltransf_23, Methyltransferase doma	2e-12
pfam08242	98	pfam08242, Methyltransf_12, Methyltransferase doma	1e-10
PRK08317	241	PRK08317, PRK08317, hypothetical protein; Provisio	1e-10
pfam13847	151	pfam13847, Methyltransf_31, Methyltransferase doma	8e-10
TIGR01934	223	TIGR01934, MenG_MenH_UbiE, ubiquinone/menaquinone	9e-09
cd02440	107	cd02440, AdoMet_MTases, S-adenosylmethionine-depen	1e-08
pfam12847	104	pfam12847, Methyltransf_18, Methyltransferase doma	3e-08
COG0500	257	COG0500, SmtA, SAM-dependent methyltransferases [S	5e-08
PRK00216	239	PRK00216, ubiE, ubiquinone/menaquinone biosynthesi	1e-07
pfam01209	233	pfam01209, Ubie_methyltran, ubiE/COQ5 methyltransf	3e-07
PRK10258	251	PRK10258, PRK10258, biotin biosynthesis protein Bi	3e-07
pfam13649	97	pfam13649, Methyltransf_25, Methyltransferase doma	3e-07
TIGR00452	314	TIGR00452, TIGR00452, tRNA (mo5U34)-methyltransfer	1e-05
PRK05785	226	PRK05785, PRK05785, hypothetical protein; Provisio	2e-05
pfam13659	117	pfam13659, Methyltransf_26, Methyltransferase doma	1e-04
TIGR02752	231	TIGR02752, MenG_heptapren, demethylmenaquinone met	4e-04
TIGR02021	219	TIGR02021, BchM-ChlM, magnesium protoporphyrin O-m	7e-04
pfam03966	47	pfam03966, Trm112p, Trm112p-like protein	0.002
pfam08003	315	pfam08003, Methyltransf_9, Protein of unknown func	0.003

>gnl|CDD|219759 pfam08241, Methyltransf_11, Methyltransferase domain

 Score = 76.9 bits (190), Expect = 8e-18
 Identities = 30/92 (32%), Positives = 45/92 (48%), Gaps = 9/92 (9%)

Query: 182 IDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQC-----YEFVQ---QESNFPKDSID 233
           +D  CG+GL +   A+ G  + V  +D S  ML         +FV    ++  FP +S D
Sbjct: 1   LDVGCGTGLLAEALARRG-GARVTGVDLSPEMLALARKRAPRKFVVGDAEDLPFPDESFD 59

Query: 234 AVHAGAAIHCWSSPSTGVAEISRVLRPGGVFV 265
            V +   +H    P   + EI+RVL+PGG  V
Sbjct: 60  VVVSSLVLHHLPDPERALREIARVLKPGGKLV 91

Members of this family are SAM dependent methyltransferases. Length = 92

>gnl|CDD|233708 TIGR02072, BioC, biotin biosynthesis protein BioC

 Score = 71.2 bits (175), Expect = 2e-14
 Identities = 33/141 (23%), Positives = 61/141 (43%), Gaps = 19/141 (13%)

Query: 181 IIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYE-------FVQ---QESNFPKD 230
           ++D  CG+G  +R   K    +  +A D S  ML Q          F+    ++      
Sbjct: 38  VLDIGCGTGYLTRALLKRFPQAEFIANDISAGMLAQAKTKLSENVQFICGDAEKLPLEDS 97

Query: 231 SIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQ 290
           S D + +  A+      S  ++E++RVL+PGG+   +T+   GP  L    +   Q+ ++
Sbjct: 98  SFDLIVSNLALQWCDDLSQALSELARVLKPGGLLAFSTF---GPGTLHELRQSFGQHGLR 154

Query: 291 ISGSYTFLSEREIEDLCRACG 311
                 +LS  E++ L +   
Sbjct: 155 ------YLSLDELKALLKNSF 169

This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology [Biosynthesis of cofactors, prosthetic groups, and carriers, Biotin]. Length = 240

>gnl|CDD|225136 COG2226, UbiE, Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]

 Score = 70.0 bits (172), Expect = 7e-14
 Identities = 42/140 (30%), Positives = 62/140 (44%), Gaps = 29/140 (20%)

Query: 140 PFMSFIYERGWRQNFVWGGFPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSG 199
             MSF   R WR+  +            L+   +KP  G  ++D +CG+G  + + AKS 
Sbjct: 29  DLMSFGLHRLWRRALI-----------SLLG--IKP--GDKVLDVACGTGDMALLLAKSV 73

Query: 200 LFSLVVALDYSENMLK-----------QCYEFVQ---QESNFPKDSIDAVHAGAAIHCWS 245
               VV LD SE+ML+           Q  EFV    +   FP +S DAV     +   +
Sbjct: 74  GTGEVVGLDISESMLEVAREKLKKKGVQNVEFVVGDAENLPFPDNSFDAVTISFGLRNVT 133

Query: 246 SPSTGVAEISRVLRPGGVFV 265
                + E+ RVL+PGG  +
Sbjct: 134 DIDKALKEMYRVLKPGGRLL 153

Length = 238

>gnl|CDD|222171 pfam13489, Methyltransf_23, Methyltransferase domain

 Score = 63.7 bits (155), Expect = 2e-12
 Identities = 32/135 (23%), Positives = 53/135 (39%), Gaps = 6/135 (4%)

Query: 178 GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKDSIDAVHA 237
           GG ++D  CG+G+  R+  + G    V  +D S   +     F   +        D + A
Sbjct: 23  GGRVLDIGCGTGILLRLLRERGFD--VTGVDPSPAAVLIFSLFDAPDPAVLAGKYDLITA 80

Query: 238 GAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTF 297
              +     P   + ++  +L+PGGV + +T + D    L      LR     IS    F
Sbjct: 81  FEVLEHLPDPPALLQQLRELLKPGGVLLISTPLADDDARLFANWHYLRPRNTHIS----F 136

Query: 298 LSEREIEDLCRACGL 312
            SE  ++ L    G 
Sbjct: 137 YSEESLKRLLEKAGF 151

This family appears to be a methyltransferase domain. Length = 154

>gnl|CDD|219760 pfam08242, Methyltransf_12, Methyltransferase domain

 Score = 57.4 bits (139), Expect = 1e-10
 Identities = 20/98 (20%), Positives = 33/98 (33%), Gaps = 15/98 (15%)

Query: 182 IDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQ--------------CYEFVQ-QESN 226
           +D  CG+G   R   ++        +D S   L+                         +
Sbjct: 1   LDIGCGTGTLLRALLEALPGLEYTGVDISPAALEAAAERLAALGLLDAVRVRLDVLDAID 60

Query: 227 FPKDSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVF 264
               S D V A   +H  + P   +  + R+L+PGGV 
Sbjct: 61  LDPGSFDVVVASNVLHHLADPRAVLRNLRRLLKPGGVL 98

Members of this family are SAM dependent methyltransferases. Length = 98

>gnl|CDD|181382 PRK08317, PRK08317, hypothetical protein; Provisional

 Score = 60.3 bits (147), Expect = 1e-10
 Identities = 35/99 (35%), Positives = 46/99 (46%), Gaps = 14/99 (14%)

Query: 178 GGNIIDASCGSGLFSRIFAK-SGLFSLVVALDYSENMLKQC----------YEFVQ---Q 223
           G  ++D  CG G  +R  A+  G    VV +D SE ML              EFV+    
Sbjct: 20  GDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGLGPNVEFVRGDAD 79

Query: 224 ESNFPKDSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGG 262
              FP  S DAV +   +     P+  +AEI+RVLRPGG
Sbjct: 80  GLPFPDGSFDAVRSDRVLQHLEDPARALAEIARVLRPGG 118

Length = 241

>gnl|CDD|222415 pfam13847, Methyltransf_31, Methyltransferase domain

 Score = 56.3 bits (136), Expect = 8e-10
 Identities = 36/129 (27%), Positives = 53/129 (41%), Gaps = 23/129 (17%)

Query: 178 GGNIIDASCGSGLFSRIFA-KSGLFSLVVALDYSENMLKQC--------YEFVQ------ 222
           G  ++D  CG+G  + I A K G  + VV +D SE  +++         YE V+      
Sbjct: 4   GIKVLDLGCGTGYLTFILAEKLGPGAEVVGIDISEEAIEKAKENAKKLGYENVEFIQGDI 63

Query: 223 ---QESNFPKDSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIP 279
               +     +S D V +   ++    P   + EI RVL+PGGV      IV  P  L  
Sbjct: 64  EELPQLQLEDNSFDVVISNEVLNHLPDPDKVLEEIIRVLKPGGVL-----IVSDPVLLSE 118

Query: 280 FSRLLRQNM 288
              LL    
Sbjct: 119 LPALLEDLE 127

This family appears to be have methyltransferase activity. Length = 151

>gnl|CDD|233645 TIGR01934, MenG_MenH_UbiE, ubiquinone/menaquinone biosynthesis methyltransferases

 Score = 54.6 bits (132), Expect = 9e-09
 Identities = 48/214 (22%), Positives = 77/214 (35%), Gaps = 55/214 (25%)

Query: 141 FMSFIYERGWRQNFVWGGFPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGL 200
            +SF   R WR+  V                 +    G  ++D +CG+G  +   AKS  
Sbjct: 18  LLSFGLHRLWRRRAV---------------KLIGVFKGQKVLDVACGTGDLAIELAKSAP 62

Query: 201 FSL-VVALDYSENMLK---------QCYEFVQ---QESNFPKDSIDAVHAGAAIHCWSSP 247
               V  +D+S  ML+            EF+Q   +   F  +S DAV     +   +  
Sbjct: 63  DRGKVTGVDFSSEMLEVAKKKSELPLNIEFIQADAEALPFEDNSFDAVTIAFGLRNVTDI 122

Query: 248 STGVAEISRVLRPGGVFVGTTYIVDGP---------------FNLIP-FSRLLRQNMMQI 291
              + E+ RVL+PGG  V    I++                  N++P    L+ +N    
Sbjct: 123 QKALREMYRVLKPGGRLV----ILEFSKPANALLKKFYKFYLKNVLPSIGGLISKN---- 174

Query: 292 SGSYTFLSEREIEDLCRACGLVDFKCTRNRGFVM 325
           + +YT+L E  I        L      +  GF  
Sbjct: 175 AEAYTYLPE-SIRAFPSQEELAAM--LKEAGFEE 205

This model represents a family of methyltransferases involved in the biosynthesis of menaquinone and ubiqinone. Some members such as the UbiE enzyme from E. coli are believed to act in both pathways, while others may act in only the menaquinone pathway. These methyltransferases are members of the UbiE/CoQ family of methyltransferases (pfam01209) which also contains ubiquinone methyltransferases and other methyltransferases. Members of this clade include a wide distribution of bacteria and eukaryotes, but no archaea. An outgroup for this clade is provided by the phosphatidylethanolamine methyltransferase (EC 2.1.1.17) from Rhodobacter sphaeroides. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone]. Length = 223

>gnl|CDD|100107 cd02440, AdoMet_MTases, S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)

 Score = 51.7 bits (124), Expect = 1e-08
 Identities = 22/108 (20%), Positives = 41/108 (37%), Gaps = 17/108 (15%)

Query: 180 NIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQC-----------YEFVQQESN-- 226
            ++D  CG+G  +   A       V  +D S   L+              E ++ ++   
Sbjct: 1   RVLDLGCGTGALALALASGPGAR-VTGVDISPVALELARKAAAALLADNVEVLKGDAEEL 59

Query: 227 --FPKDSIDAVHAGAAIHCW-SSPSTGVAEISRVLRPGGVFVGTTYIV 271
                +S D + +   +H      +  + E  R+L+PGGV V T  + 
Sbjct: 60  PPEADESFDVIISDPPLHHLVEDLARFLEEARRLLKPGGVLVLTLVLA 107

There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.). Length = 107

>gnl|CDD|221804 pfam12847, Methyltransf_18, Methyltransferase domain

 Score = 50.8 bits (122), Expect = 3e-08
 Identities = 24/102 (23%), Positives = 40/102 (39%), Gaps = 17/102 (16%)

Query: 178 GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQC-----------YEFVQQESN 226
           G  ++D  CG+G  +   A+    + V  +D S  ML+               FVQ ++ 
Sbjct: 2   GARVLDIGCGTGSLAIELARLFPGARVTGVDLSPEMLELARENAKLALGPRITFVQGDAP 61

Query: 227 FPKDSI---DAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFV 265
              D +   DAV  G            +  ++ +L+PGG  V
Sbjct: 62  DALDLLEGFDAVFIGGGGGDLLEL---LDALASLLKPGGRLV 100

Protein in this family function as methyltransferases. Length = 104

>gnl|CDD|223574 COG0500, SmtA, SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]

 Score = 53.0 bits (124), Expect = 5e-08
 Identities = 32/168 (19%), Positives = 52/168 (30%), Gaps = 23/168 (13%)

Query: 129 LMSPATEFFRMPFMSFIYERGWRQNFVWGGFPGPEKEFELMKGYLKPVLGGNIIDASCGS 188
               + E        +         F+       +    L    L P   G ++D  CG+
Sbjct: 1   DSLLSAELLSRILELYDRLAELLDAFLLLAEELLDLLLVLRLLRLLPGGLG-VLDIGCGT 59

Query: 189 GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKDSIDAVHAGA--------- 239
           G  + +    G  + VV +D S  ML        +        +D V A A         
Sbjct: 60  GRLALLARLGGRGAYVVGVDLSPEMLAL---ARARAEGAGLGLVDFVVADALGGVLPFED 116

Query: 240 ----------AIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNL 277
                      +     P+  + E+ RVL+PGG  V +  + DG    
Sbjct: 117 SASFDLVISLLVLHLLPPAKALRELLRVLKPGGRLVLSDLLRDGLLEG 164

Length = 257

>gnl|CDD|234689 PRK00216, ubiE, ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed

 Score = 51.7 bits (125), Expect = 1e-07
 Identities = 40/140 (28%), Positives = 58/140 (41%), Gaps = 31/140 (22%)

Query: 142 MSFIYERGWRQNFVWGGFPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAK-SGL 200
           +SF   R WR+  +                +L    G  ++D +CG+G  +   AK  G 
Sbjct: 31  LSFGLHRVWRRKTI---------------KWLGVRPGDKVLDLACGTGDLAIALAKAVGK 75

Query: 201 FSLVVALDYSENML---KQCY---------EFVQ---QESNFPKDSIDAVHAGAAIHCWS 245
              VV LD+SE ML   ++           EFVQ   +   FP +S DAV     +    
Sbjct: 76  TGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALPFPDNSFDAVTIAFGLRNVP 135

Query: 246 SPSTGVAEISRVLRPGGVFV 265
                + E+ RVL+PGG  V
Sbjct: 136 DIDKALREMYRVLKPGGRLV 155

Length = 239

>gnl|CDD|110227 pfam01209, Ubie_methyltran, ubiE/COQ5 methyltransferase family

 Score = 50.5 bits (121), Expect = 3e-07
 Identities = 32/103 (31%), Positives = 46/103 (44%), Gaps = 15/103 (14%)

Query: 178 GGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQC-----------YEFVQ--- 222
           G   +D + G+G ++   + S G    VV LD +ENMLK+             EF+Q   
Sbjct: 48  GNKFLDVAGGTGDWTFGLSDSAGSSGKVVGLDINENMLKEGEKKAKEEGKYNIEFLQGNA 107

Query: 223 QESNFPKDSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFV 265
           +E  F  DS D V     +  +      + E  RVL+PGG  V
Sbjct: 108 EELPFEDDSFDIVTISFGLRNFPDYLKVLKEAFRVLKPGGRVV 150

Length = 233

>gnl|CDD|182340 PRK10258, PRK10258, biotin biosynthesis protein BioC; Provisional

 Score = 50.5 bits (121), Expect = 3e-07
 Identities = 31/99 (31%), Positives = 46/99 (46%), Gaps = 15/99 (15%)

Query: 181 IIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESN-----------FPK 229
           ++DA CG G  SR + + G  S V ALD S  ML Q  +  +  ++              
Sbjct: 46  VLDAGCGPGWMSRYWRERG--SQVTALDLSPPMLAQARQ--KDAADHYLAGDIESLPLAT 101

Query: 230 DSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTT 268
            + D   +  A+    + ST + E+ RV+RPGGV   TT
Sbjct: 102 ATFDLAWSNLAVQWCGNLSTALRELYRVVRPGGVVAFTT 140

Length = 251

>gnl|CDD|222287 pfam13649, Methyltransf_25, Methyltransferase domain

 Score = 47.7 bits (114), Expect = 3e-07
 Identities = 30/98 (30%), Positives = 44/98 (44%), Gaps = 17/98 (17%)

Query: 181 IIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYE----------FVQQ---ESNF 227
           I+D  CG+G   R  A++G  S V  +D S+  L+   E          FV     +  F
Sbjct: 1   ILDLGCGTGRVLRALARAG-PSSVTGVDISKEALELAKERLRDKGPKVRFVVADARDLPF 59

Query: 228 PKDSIDAVH-AGAAIHCWSSPS--TGVAEISRVLRPGG 262
            + S D V  AG ++   S       + E +R+LRPGG
Sbjct: 60  EEGSFDLVICAGLSLDYLSPKQLRALLREAARLLRPGG 97

This family appears to be a methyltransferase domain. Length = 97

>gnl|CDD|129544 TIGR00452, TIGR00452, tRNA (mo5U34)-methyltransferase

 Score = 46.1 bits (109), Expect = 1e-05
 Identities = 38/185 (20%), Positives = 67/185 (36%), Gaps = 34/185 (18%)

Query: 150 WRQNFVWGGFPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDY 209
           WR +  W          + +  +L P+ G  I+D  CGSG         G    +V +D 
Sbjct: 104 WRSDIKW----------DRVLPHLSPLKGRTILDVGCGSGYHMWRMLGHGA-KSLVGIDP 152

Query: 210 SENMLKQCYEFVQQ---------------ESNFPKDSIDAVHAGAAIHCWSSPSTGVAEI 254
           +   L Q +E V++               E      + D V +   ++   SP   + ++
Sbjct: 153 TVLFLCQ-FEAVRKLLDNDKRAILEPLGIEQLHELYAFDTVFSMGVLYHRKSPLEHLKQL 211

Query: 255 SRVLRPGGVFVGTTYIVDGPFN--LIPFSRLLRQNMMQISGSYTFLSEREIEDLCRACGL 312
              L   G  V  T ++DG  N  L+P  R       ++   Y   S   +++     G 
Sbjct: 212 KHQLVIKGELVLETLVIDGDLNTVLVPKDR-----YAKMKNVYFIPSVSALKNWLEKVGF 266

Query: 313 VDFKC 317
            +F+ 
Sbjct: 267 ENFRI 271

This model describes a set of proteins with homology in its central region to a large number of methyltransferases active on a variety of substrates. The similarity includes a motif resembling ILDVGCG[SG]G. Known examples to date are restricted to the proteobacteria [Unknown function, Enzymes of unknown specificity]. Length = 314

>gnl|CDD|235607 PRK05785, PRK05785, hypothetical protein; Provisional

 Score = 45.1 bits (107), Expect = 2e-05
 Identities = 35/105 (33%), Positives = 47/105 (44%), Gaps = 18/105 (17%)

Query: 167 ELMKGYLK----PVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQ 222
           EL+K  LK    P     ++D + G G  S  F K   +  VVALDY+ENMLK     V 
Sbjct: 40  ELVKTILKYCGRPKK---VLDVAAGKGELSYHFKKVFKYY-VVALDYAENMLK--MNLVA 93

Query: 223 QES--------NFPKDSIDAVHAGAAIHCWSSPSTGVAEISRVLR 259
            +          F   S D V +  A+H   +    +AE +RV R
Sbjct: 94  DDKVVGSFEALPFRDKSFDVVMSSFALHASDNIEKVIAEFTRVSR 138

Length = 226

>gnl|CDD|222295 pfam13659, Methyltransf_26, Methyltransferase domain

 Score = 40.5 bits (95), Expect = 1e-04
 Identities = 26/112 (23%), Positives = 37/112 (33%), Gaps = 24/112 (21%)

Query: 178 GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSE------------NMLKQCYEFVQ--- 222
           G  ++D   GSG F    A++G  + VV ++                 L      V    
Sbjct: 1   GDRVLDPGAGSGAFLLAAARAGPDARVVGVELDPEAAALARRRLALAGLAPRVRVVVGDA 60

Query: 223 -QESNFPKDSIDAV--------HAGAAIHCWSSPSTGVAEISRVLRPGGVFV 265
            +    P  S D V         AG            +A   R+L+PGGV V
Sbjct: 61  RELLELPDGSFDLVLGNPPYGPRAGDPKDNRDLYDRFLAAALRLLKPGGVLV 112

This family contains methyltransferase domains. Length = 117

>gnl|CDD|131799 TIGR02752, MenG_heptapren, demethylmenaquinone methyltransferase

 Score = 40.9 bits (96), Expect = 4e-04
 Identities = 29/103 (28%), Positives = 45/103 (43%), Gaps = 15/103 (14%)

Query: 178 GGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQQ------------- 223
           G + +D  CG+  +S   A++ G    V+ LD+SENML    + V+              
Sbjct: 46  GTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGLHNVELVHGNA 105

Query: 224 -ESNFPKDSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFV 265
            E  F  +S D V  G  +         + E+ RV++PGG  V
Sbjct: 106 MELPFDDNSFDYVTIGFGLRNVPDYMQVLREMYRVVKPGGKVV 148

MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone]. Length = 231

>gnl|CDD|233687 TIGR02021, BchM-ChlM, magnesium protoporphyrin O-methyltransferase

 Score = 40.2 bits (94), Expect = 7e-04
 Identities = 18/41 (43%), Positives = 26/41 (63%), Gaps = 2/41 (4%)

Query: 174 KPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENML 214
            P+ G  ++DA CG+GL S   AK G  ++V A+D SE M+
Sbjct: 52  DPLKGKRVLDAGCGTGLLSIELAKRG--AIVKAVDISEQMV 90

This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM [Biosynthesis of cofactors, prosthetic groups, and carriers, Chlorophyll and bacteriochlorphyll]. Length = 219

>gnl|CDD|217819 pfam03966, Trm112p, Trm112p-like protein

 Score = 35.7 bits (83), Expect = 0.002
 Identities = 11/39 (28%), Positives = 15/39 (38%), Gaps = 2/39 (5%)

Query: 70  NVLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTY 108
            +LACP+C  PL  +  +           L C  C   Y
Sbjct: 6   EILACPLCKGPLALVEVAGH--YDIEEGELVCPECGLAY 42

The function of this family is uncertain. The bacterial members are about 60-70 amino acids in length and the eukaryotic examples are about 120 amino acids in length. The C terminus contains the strongest conservation. Trm112p is required for tRNA methylation in S. cerevisiae and is found in complexes with 2 tRNA methylases (TRM9 and TRM11) also with putative methyltransferase YDR140W. The zinc-finger protein Ynr046w is plurifunctional and a component of the eRF1 methyltransferase in yeast. The crystal structure of Ynr046w has been determined to 1.7 A resolution. It comprises a zinc-binding domain built from both the N- and C-terminal sequences and an inserted domain, absent from bacterial and archaeal orthologs of the protein, composed of three alpha-helices. Length = 47

>gnl|CDD|149213 pfam08003, Methyltransf_9, Protein of unknown function (DUF1698)

 Score = 38.9 bits (91), Expect = 0.003
 Identities = 43/186 (23%), Positives = 75/186 (40%), Gaps = 36/186 (19%)

Query: 150 WRQNFVWGGFPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFS-RIFAKSGLFSLVVALD 208
           WR ++ W          + +  +L P+ G  I+D  CG+G    R+  +    +LVV +D
Sbjct: 98  WRSDWKW----------DRVLPHLSPLKGRTILDVGCGNGYHMWRMLGEGA--ALVVGID 145

Query: 209 YSENMLKQCYEFVQQESNF---------------PKDSIDAVHAGAAIHCWSSPSTGVAE 253
            SE  L Q +E V++                     ++ D V +   ++   SP   + +
Sbjct: 146 PSELFLCQ-FEAVRKLLGNDQRAHLLPLGIEQLPALEAFDTVFSMGVLYHRRSPLDHLLQ 204

Query: 254 ISRVLRPGGVFVGTTYIVDGPFN--LIPFSRLLRQNMMQISGSYTFLSEREIEDLCRACG 311
           +   L  GG  V  T +++G  N  L+P  R       Q+   Y   S   +++    CG
Sbjct: 205 LKDQLVKGGELVLETLVIEGDENTVLVPGDR-----YAQMRNVYFIPSAAALKNWLEKCG 259

Query: 312 LVDFKC 317
            VD + 
Sbjct: 260 FVDVRI 265

This family contains many hypothetical proteins. It also includes two putative methyltransferase proteins. Length = 315

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	334
COG2226	238	UbiE Methylase involved in ubiquinone/menaquinone	99.93
PF01209	233	Ubie_methyltran: ubiE/COQ5 methyltransferase famil	99.92
PLN02233	261	ubiquinone biosynthesis methyltransferase	99.89
TIGR02752	231	MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me	99.85
PRK11088	272	rrmA 23S rRNA methyltransferase A; Provisional	99.84
PF13489	161	Methyltransf_23: Methyltransferase domain; PDB: 3J	99.84
KOG1540	296	consensus Ubiquinone biosynthesis methyltransferas	99.83
PLN02244	340	tocopherol O-methyltransferase	99.83
PLN02396	322	hexaprenyldihydroxybenzoate methyltransferase	99.81
COG2227	243	UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-	99.8
PRK05785	226	hypothetical protein; Provisional	99.8
TIGR00452	314	methyltransferase, putative. Known examples to dat	99.79
PTZ00098	263	phosphoethanolamine N-methyltransferase; Provision	99.78
PRK11036	255	putative S-adenosyl-L-methionine-dependent methylt	99.78
PRK15068	322	tRNA mo(5)U34 methyltransferase; Provisional	99.78
PF08003	315	Methyltransf_9: Protein of unknown function (DUF16	99.78
PRK14103	255	trans-aconitate 2-methyltransferase; Provisional	99.77
PRK00216	239	ubiE ubiquinone/menaquinone biosynthesis methyltra	99.76
PRK10258	251	biotin biosynthesis protein BioC; Provisional	99.75
PLN02336	475	phosphoethanolamine N-methyltransferase	99.75
PLN02490	340	MPBQ/MSBQ methyltransferase	99.75
PRK15451	247	tRNA cmo(5)U34 methyltransferase; Provisional	99.74
KOG1270	282	consensus Methyltransferases [Coenzyme transport a	99.73
TIGR00740	239	methyltransferase, putative. A simple BLAST search	99.73
PRK08317	241	hypothetical protein; Provisional	99.72
TIGR01934	223	MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis	99.72
PRK11873	272	arsM arsenite S-adenosylmethyltransferase; Reviewe	99.71
COG2230	283	Cfa Cyclopropane fatty acid synthase and related m	99.71
PF08241	95	Methyltransf_11: Methyltransferase domain; InterPr	99.7
PF02353	273	CMAS: Mycolic acid cyclopropane synthetase; InterP	99.7
PRK01683	258	trans-aconitate 2-methyltransferase; Provisional	99.69
smart00828	224	PKS_MT Methyltransferase in polyketide synthase (P	99.69
PF07021	193	MetW: Methionine biosynthesis protein MetW; InterP	99.68
TIGR02072	240	BioC biotin biosynthesis protein BioC. This enzyme	99.66
PRK06202	232	hypothetical protein; Provisional	99.65
PRK11207	197	tellurite resistance protein TehB; Provisional	99.65
TIGR00477	195	tehB tellurite resistance protein TehB. Part of a	99.65
KOG4300	252	consensus Predicted methyltransferase [General fun	99.64
PF13847	152	Methyltransf_31: Methyltransferase domain; PDB: 3T	99.64
PRK05134	233	bifunctional 3-demethylubiquinone-9 3-methyltransf	99.63
PF08242	99	Methyltransf_12: Methyltransferase domain; InterPr	99.62
TIGR02716	306	C20_methyl_CrtF C-20 methyltransferase BchU. Membe	99.61
PF12847	112	Methyltransf_18: Methyltransferase domain; PDB: 3G	99.6
PRK12335	287	tellurite resistance protein TehB; Provisional	99.59
PLN02585	315	magnesium protoporphyrin IX methyltransferase	99.59
TIGR02081	194	metW methionine biosynthesis protein MetW. This pr	99.59
TIGR01983	224	UbiG ubiquinone biosynthesis O-methyltransferase.	99.58
TIGR02021	219	BchM-ChlM magnesium protoporphyrin O-methyltransfe	99.57
PRK08287	187	cobalt-precorrin-6Y C(15)-methyltransferase; Valid	99.56
PRK00107	187	gidB 16S rRNA methyltransferase GidB; Reviewed	99.55
PRK11705	383	cyclopropane fatty acyl phospholipid synthase; Pro	99.54
PRK00517	250	prmA ribosomal protein L11 methyltransferase; Revi	99.54
PLN02336	475	phosphoethanolamine N-methyltransferase	99.53
TIGR00537	179	hemK_rel_arch HemK-related putative methylase. The	99.53
PRK07580	230	Mg-protoporphyrin IX methyl transferase; Validated	99.52
PRK04266	226	fibrillarin; Provisional	99.49
TIGR03840	213	TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d	99.48
TIGR00138	181	gidB 16S rRNA methyltransferase GidB. GidB (glucos	99.47
PLN02232	160	ubiquinone biosynthesis methyltransferase	99.46
TIGR03587	204	Pse_Me-ase pseudaminic acid biosynthesis-associate	99.46
COG4106	257	Tam Trans-aconitate methyltransferase [General fun	99.45
COG2264	300	PrmA Ribosomal protein L11 methylase [Translation,	99.45
COG4976	287	Predicted methyltransferase (contains TPR repeat)	99.44
PRK06922	677	hypothetical protein; Provisional	99.44
PF05401	201	NodS: Nodulation protein S (NodS); InterPro: IPR00	99.43
PRK14967	223	putative methyltransferase; Provisional	99.43
PRK14968	188	putative methyltransferase; Provisional	99.43
PF06325	295	PrmA: Ribosomal protein L11 methyltransferase (Prm	99.42
TIGR02469	124	CbiT precorrin-6Y C5,15-methyltransferase (decarbo	99.42
PRK09489	342	rsmC 16S ribosomal RNA m2G1207 methyltransferase;	99.42
PLN03075	296	nicotianamine synthase; Provisional	99.42
PRK00377	198	cbiT cobalt-precorrin-6Y C(15)-methyltransferase;	99.41
PRK00121	202	trmB tRNA (guanine-N(7)-)-methyltransferase; Revie	99.41
KOG2361	264	consensus Predicted methyltransferase [General fun	99.41
PRK13255	218	thiopurine S-methyltransferase; Reviewed	99.4
PF03848	192	TehB: Tellurite resistance protein TehB; InterPro:	99.4
PF13649	101	Methyltransf_25: Methyltransferase domain; PDB: 3B	99.4
smart00138	264	MeTrc Methyltransferase, chemotaxis proteins. Meth	99.37
PRK15001	378	SAM-dependent 23S ribosomal RNA mG1835 methyltrans	99.35
PTZ00146	293	fibrillarin; Provisional	99.35
TIGR00406	288	prmA ribosomal protein L11 methyltransferase. Ribo	99.35
COG2242	187	CobL Precorrin-6B methylase 2 [Coenzyme metabolism	99.34
PRK13944	205	protein-L-isoaspartate O-methyltransferase; Provis	99.34
TIGR03534	251	RF_mod_PrmC protein-(glutamine-N5) methyltransfera	99.33
PF06080	204	DUF938: Protein of unknown function (DUF938); Inte	99.33
PRK14121	390	tRNA (guanine-N(7)-)-methyltransferase; Provisiona	99.31
PF05175	170	MTS: Methyltransferase small domain; InterPro: IPR	99.31
TIGR03438	301	probable methyltransferase. This model represents	99.3
PF00891	241	Methyltransf_2: O-methyltransferase; InterPro: IPR	99.28
PRK13942	212	protein-L-isoaspartate O-methyltransferase; Provis	99.28
PRK11188	209	rrmJ 23S rRNA methyltransferase J; Provisional	99.28
TIGR00091	194	tRNA (guanine-N(7)-)-methyltransferase. In E. coli	99.27
KOG1541	270	consensus Predicted protein carboxyl methylase [Ge	99.27
PRK07402	196	precorrin-6B methylase; Provisional	99.27
TIGR03533	284	L3_gln_methyl protein-(glutamine-N5) methyltransfe	99.26
PRK09328	275	N5-glutamine S-adenosyl-L-methionine-dependent met	99.26
TIGR00536	284	hemK_fam HemK family putative methylases. The gene	99.25
TIGR00080	215	pimt protein-L-isoaspartate(D-aspartate) O-methylt	99.24
TIGR01177	329	conserved hypothetical protein TIGR01177. This fam	99.23
KOG1271	227	consensus Methyltransferases [General function pre	99.22
KOG3010	261	consensus Methyltransferase [General function pred	99.22
COG2813	300	RsmC 16S RNA G1207 methylase RsmC [Translation, ri	99.21
PF13659	117	Methyltransf_26: Methyltransferase domain; PDB: 3G	99.21
PF05148	219	Methyltransf_8: Hypothetical methyltransferase; In	99.2
PRK00312	212	pcm protein-L-isoaspartate O-methyltransferase; Re	99.19
PRK11805	307	N5-glutamine S-adenosyl-L-methionine-dependent met	99.18
COG2519	256	GCD14 tRNA(1-methyladenosine) methyltransferase an	99.18
PF05219	265	DREV: DREV methyltransferase; InterPro: IPR007884	99.17
PF05891	218	Methyltransf_PK: AdoMet dependent proline di-methy	99.17
PHA03411	279	putative methyltransferase; Provisional	99.17
PRK14966	423	unknown domain/N5-glutamine S-adenosyl-L-methionin	99.15
COG4123	248	Predicted O-methyltransferase [General function pr	99.14
PF05724	218	TPMT: Thiopurine S-methyltransferase (TPMT); Inter	99.13
PRK13256	226	thiopurine S-methyltransferase; Reviewed	99.12
COG2518	209	Pcm Protein-L-isoaspartate carboxylmethyltransfera	99.11
PF03291	331	Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971	99.1
TIGR03704	251	PrmC_rel_meth putative protein-(glutamine-N5) meth	99.1
PF08704	247	GCD14: tRNA methyltransferase complex GCD14 subuni	99.1
PRK01544	506	bifunctional N5-glutamine S-adenosyl-L-methionine-	99.09
PF01135	209	PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl	99.06
cd02440	107	AdoMet_MTases S-adenosylmethionine-dependent methy	99.05
COG2890	280	HemK Methylase of polypeptide chain release factor	99.03
KOG3178	342	consensus Hydroxyindole-O-methyltransferase and re	99.02
KOG3045	325	consensus Predicted RNA methylase involved in rRNA	99.02
KOG2899	288	consensus Predicted methyltransferase [General fun	99.0
PRK00811	283	spermidine synthase; Provisional	99.0
TIGR00563	426	rsmB ribosomal RNA small subunit methyltransferase	99.0
PRK10901	427	16S rRNA methyltransferase B; Provisional	98.99
KOG1975	389	consensus mRNA cap methyltransferase [RNA processi	98.98
PRK01581	374	speE spermidine synthase; Validated	98.98
TIGR00417	270	speE spermidine synthase. the SpeE subunit of sper	98.98
PRK13943	322	protein-L-isoaspartate O-methyltransferase; Provis	98.97
PRK04457	262	spermidine synthase; Provisional	98.95
TIGR00438	188	rrmJ cell division protein FtsJ.	98.95
PF12147	311	Methyltransf_20: Putative methyltransferase; Inter	98.92
PRK14901	434	16S rRNA methyltransferase B; Provisional	98.91
PF11968	219	DUF3321: Putative methyltransferase (DUF3321); Int	98.88
PF02390	195	Methyltransf_4: Putative methyltransferase ; Inter	98.88
PF07942	270	N2227: N2227-like protein; InterPro: IPR012901 Thi	98.85
PRK14903	431	16S rRNA methyltransferase B; Provisional	98.83
TIGR00446	264	nop2p NOL1/NOP2/sun family putative RNA methylase.	98.82
KOG2940	325	consensus Predicted methyltransferase [General fun	98.82
PLN02366	308	spermidine synthase	98.82
PRK14902	444	16S rRNA methyltransferase B; Provisional	98.82
PRK14904	445	16S rRNA methyltransferase B; Provisional	98.79
PLN02781	234	Probable caffeoyl-CoA O-methyltransferase	98.79
PRK03612	521	spermidine synthase; Provisional	98.79
PF03141	506	Methyltransf_29: Putative S-adenosyl-L-methionine-	98.79
COG0220	227	Predicted S-adenosylmethionine-dependent methyltra	98.77
smart00650	169	rADc Ribosomal RNA adenine dimethylases.	98.73
COG2521	287	Predicted archaeal methyltransferase [General func	98.71
PRK11783	702	rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi	98.7
PRK15128	396	23S rRNA m(5)C1962 methyltransferase; Provisional	98.65
PHA03412	241	putative methyltransferase; Provisional	98.64
PRK13168	443	rumA 23S rRNA m(5)U1939 methyltransferase; Reviewe	98.64
PLN02672	1082	methionine S-methyltransferase	98.64
COG4122	219	Predicted O-methyltransferase [General function pr	98.63
KOG2904	328	consensus Predicted methyltransferase [General fun	98.62
PF10294	173	Methyltransf_16: Putative methyltransferase; Inter	98.61
PF01739	196	CheR: CheR methyltransferase, SAM binding domain;	98.61
PRK11727	321	23S rRNA mA1618 methyltransferase; Provisional	98.59
TIGR00479	431	rumA 23S rRNA (uracil-5-)-methyltransferase RumA.	98.58
PF01234	256	NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: I	98.57
PF01596	205	Methyltransf_3: O-methyltransferase; InterPro: IPR	98.56
PLN02476	278	O-methyltransferase	98.54
PRK10909	199	rsmD 16S rRNA m(2)G966-methyltransferase; Provisio	98.51
PRK10611	287	chemotaxis methyltransferase CheR; Provisional	98.5
KOG1331	293	consensus Predicted methyltransferase [General fun	98.48
KOG1269	364	consensus SAM-dependent methyltransferases [Lipid	98.47
COG1041	347	Predicted DNA modification methylase [DNA replicat	98.47
PRK01544	506	bifunctional N5-glutamine S-adenosyl-L-methionine-	98.46
PRK03522	315	rumB 23S rRNA methyluridine methyltransferase; Rev	98.45
COG2263	198	Predicted RNA methylase [Translation, ribosomal st	98.4
KOG1499	346	consensus Protein arginine N-methyltransferase PRM	98.39
PF09243	274	Rsm22: Mitochondrial small ribosomal subunit Rsm22	98.37
PRK00536	262	speE spermidine synthase; Provisional	98.36
KOG1661	237	consensus Protein-L-isoaspartate(D-aspartate) O-me	98.35
KOG3191	209	consensus Predicted N6-DNA-methyltransferase [Tran	98.34
COG3963	194	Phospholipid N-methyltransferase [Lipid metabolism	98.33
PRK14896	258	ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1	98.31
COG1352	268	CheR Methylase of chemotaxis methyl-accepting prot	98.3
KOG3987	288	consensus Uncharacterized conserved protein DREV/C	98.29
TIGR00478	228	tly hemolysin TlyA family protein. Hemolysins are	98.28
PLN02589	247	caffeoyl-CoA O-methyltransferase	98.28
COG0421	282	SpeE Spermidine synthase [Amino acid transport and	98.27
PRK04338	382	N(2),N(2)-dimethylguanosine tRNA methyltransferase	98.25
TIGR02085	374	meth_trns_rumB 23S rRNA (uracil-5-)-methyltransfer	98.24
PLN02823	336	spermine synthase	98.23
PRK00274	272	ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1	98.23
PRK04148	134	hypothetical protein; Provisional	98.21
KOG2915	314	consensus tRNA(1-methyladenosine) methyltransferas	98.21
PTZ00338	294	dimethyladenosine transferase-like protein; Provis	98.2
PF04672	267	Methyltransf_19: S-adenosyl methyltransferase; Int	98.19
KOG3201	201	consensus Uncharacterized conserved protein [Funct	98.18
PF05185	448	PRMT5: PRMT5 arginine-N-methyltransferase; InterPr	98.15
PF02384	311	N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 T	98.14
TIGR00755	253	ksgA dimethyladenosine transferase. Alternate name	98.14
PF01564	246	Spermine_synth: Spermine/spermidine synthase; Inte	98.11
PF01728	181	FtsJ: FtsJ-like methyltransferase; InterPro: IPR00	98.06
PF01170	179	UPF0020: Putative RNA methylase family UPF0020; In	98.05
TIGR00095	189	RNA methyltransferase, RsmD family. This model rep	98.05
KOG2798	369	consensus Putative trehalase [Carbohydrate transpo	98.04
PF02527	184	GidB: rRNA small subunit methyltransferase G; Inte	98.02
COG4627	185	Uncharacterized protein conserved in bacteria [Fun	97.98
TIGR03439	319	methyl_EasF probable methyltransferase domain, Eas	97.91
PRK11933	470	yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF;	97.91
PF02475	200	Met_10: Met-10+ like-protein; InterPro: IPR003402	97.9
COG0500	257	SmtA SAM-dependent methyltransferases [Secondary m	97.89
COG1092	393	Predicted SAM-dependent methyltransferases [Genera	97.88
TIGR02987	524	met_A_Alw26 type II restriction m6 adenine DNA met	97.88
PF03602	183	Cons_hypoth95: Conserved hypothetical protein 95;	97.84
KOG1663	237	consensus O-methyltransferase [Secondary metabolit	97.83
COG0293	205	FtsJ 23S rRNA methylase [Translation, ribosomal st	97.82
PF04816	205	DUF633: Family of unknown function (DUF633) ; Inte	97.81
COG4798	238	Predicted methyltransferase [General function pred	97.75
PF01269	229	Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibr	97.73
PRK00050	296	16S rRNA m(4)C1402 methyltranserfase; Provisional	97.71
PF08123	205	DOT1: Histone methylation protein DOT1 ; InterPro:	97.65
KOG3420	185	consensus Predicted RNA methylase [Translation, ri	97.65
COG0357	215	GidB Predicted S-adenosylmethionine-dependent meth	97.64
KOG0820	315	consensus Ribosomal RNA adenine dimethylase [RNA p	97.64
KOG3115	249	consensus Methyltransferase-like protein [General	97.63
COG0030	259	KsgA Dimethyladenosine transferase (rRNA methylati	97.61
KOG1500	517	consensus Protein arginine N-methyltransferase CAR	97.61
COG2520	341	Predicted methyltransferase [General function pred	97.61
PF10672	286	Methyltrans_SAM: S-adenosylmethionine-dependent me	97.59
COG0742	187	N6-adenine-specific methylase [DNA replication, re	97.49
PF13679	141	Methyltransf_32: Methyltransferase domain	97.47
KOG2352	482	consensus Predicted spermine/spermidine synthase [	97.45
COG2265	432	TrmA SAM-dependent methyltransferases related to t	97.45
TIGR00308	374	TRM1 tRNA(guanine-26,N2-N2) methyltransferase. Thi	97.43
PF03269	177	DUF268: Caenorhabditis protein of unknown function	97.43
KOG1709	271	consensus Guanidinoacetate methyltransferase and r	97.43
COG0144	355	Sun tRNA and rRNA cytosine-C5-methylases [Translat	97.41
COG4262	508	Predicted spermidine synthase with an N-terminal m	97.39
KOG4589	232	consensus Cell division protein FtsJ [Cell cycle c	97.38
COG2835	60	Uncharacterized conserved protein [Function unknow	97.37
PRK11827	60	hypothetical protein; Provisional	97.36
PF03141	506	Methyltransf_29: Putative S-adenosyl-L-methionine-	97.35
TIGR02143	353	trmA_only tRNA (uracil-5-)-methyltransferase. This	97.35
TIGR01444	143	fkbM_fam methyltransferase, FkbM family. Members o	97.34
COG3897	218	Predicted methyltransferase [General function pred	97.32
PF07091	251	FmrO: Ribosomal RNA methyltransferase (FmrO); PDB:	97.26
PRK05031	362	tRNA (uracil-5-)-methyltransferase; Validated	97.24
PRK11760	357	putative 23S rRNA C2498 ribose 2'-O-ribose methylt	97.21
PF03059	276	NAS: Nicotianamine synthase protein; InterPro: IPR	97.19
COG1189	245	Predicted rRNA methylase [Translation, ribosomal s	97.15
COG1889	231	NOP1 Fibrillarin-like rRNA methylase [Translation,	97.13
PLN02668	386	indole-3-acetate carboxyl methyltransferase	97.13
PF03492	334	Methyltransf_7: SAM dependent carboxyl methyltrans	97.06
PF00398	262	RrnaAD: Ribosomal RNA adenine dimethylase; InterPr	97.04
PRK11783	702	rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi	97.03
PF01189	283	Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR	97.01
PF05958	352	tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferas	96.92
COG5459	484	Predicted rRNA methylase [Translation, ribosomal s	96.88
TIGR00006	305	S-adenosyl-methyltransferase MraW. Genetics paper	96.79
COG2384	226	Predicted SAM-dependent methyltransferase [General	96.78
KOG2187	534	consensus tRNA uracil-5-methyltransferase and rela	96.44
PF03966	68	Trm112p: Trm112p-like protein; InterPro: IPR005651	96.43
PF09445	163	Methyltransf_15: RNA cap guanine-N2 methyltransfer	96.3
PF06859	110	Bin3: Bicoid-interacting protein 3 (Bin3); InterPr	95.92
COG4076	252	Predicted RNA methylase [General function predicti	95.91
COG0116	381	Predicted N6-adenine-specific DNA methylase [DNA r	95.83
COG1063	350	Tdh Threonine dehydrogenase and related Zn-depende	95.83
PF07757	112	AdoMet_MTase: Predicted AdoMet-dependent methyltra	95.79
COG0286	489	HsdM Type I restriction-modification system methyl	95.73
KOG4058	199	consensus Uncharacterized conserved protein [Funct	95.71
PF13578	106	Methyltransf_24: Methyltransferase domain; PDB: 3S	95.7
PF01795	310	Methyltransf_5: MraW methylase family; InterPro: I	95.7
KOG2793	248	consensus Putative N2,N2-dimethylguanosine tRNA me	95.7
PF13719	37	zinc_ribbon_5: zinc-ribbon domain	95.68
PF05971	299	Methyltransf_10: Protein of unknown function (DUF8	95.6
COG1064	339	AdhP Zn-dependent alcohol dehydrogenases [General	95.6
KOG2539	491	consensus Mitochondrial/chloroplast ribosome small	95.34
PRK11524	284	putative methyltransferase; Provisional	95.31
KOG2730	263	consensus Methylase [General function prediction o	95.07
PF01555	231	N6_N4_Mtase: DNA methylase; InterPro: IPR002941 Th	95.02
COG3809	88	Uncharacterized protein conserved in bacteria [Fun	95.0
TIGR00027	260	mthyl_TIGR00027 methyltransferase, putative, TIGR0	94.98
PRK13699	227	putative methylase; Provisional	94.74
cd08283	386	FDH_like_1 Glutathione-dependent formaldehyde dehy	94.71
PF13717	36	zinc_ribbon_4: zinc-ribbon domain	94.7
PF06962	140	rRNA_methylase: Putative rRNA methylase; InterPro:	94.54
PRK00420	112	hypothetical protein; Validated	94.41
KOG1122	460	consensus tRNA and rRNA cytosine-C5-methylase (nuc	94.19
PRK09424	509	pntA NAD(P) transhydrogenase subunit alpha; Provis	94.1
KOG1099	294	consensus SAM-dependent methyltransferase/cell div	94.04
KOG0024	354	consensus Sorbitol dehydrogenase [Secondary metabo	93.99
PF01861	243	DUF43: Protein of unknown function DUF43; InterPro	93.96
TIGR02098	38	MJ0042_CXXC MJ0042 family finger-like domain. This	93.87
PF14803	34	Nudix_N_2: Nudix N-terminal; PDB: 3CNG_C.	93.77
KOG1596	317	consensus Fibrillarin and related nucleolar RNA-bi	93.74
PF04989	206	CmcI: Cephalosporin hydroxylase; InterPro: IPR0070	93.69
PHA01634	156	hypothetical protein	93.57
PF05430	124	Methyltransf_30: S-adenosyl-L-methionine-dependent	93.56
KOG1562	337	consensus Spermidine synthase [Amino acid transpor	93.47
KOG2920	282	consensus Predicted methyltransferase [General fun	93.43
COG0275	314	Predicted S-adenosylmethionine-dependent methyltra	93.39
PF03514	374	GRAS: GRAS domain family; InterPro: IPR005202 Sequ	93.3
PF10571	26	UPF0547: Uncharacterised protein family UPF0547; I	93.17
TIGR01206	54	lysW lysine biosynthesis protein LysW. This very s	92.87
COG1997	89	RPL43A Ribosomal protein L37AE/L43A [Translation,	92.73
PF02636	252	Methyltransf_28: Putative S-adenosyl-L-methionine-	92.6
PRK09678	72	DNA-binding transcriptional regulator; Provisional	92.59
KOG1098	780	consensus Putative SAM-dependent rRNA methyltransf	92.23
PF11599	246	AviRa: RRNA methyltransferase AviRa; InterPro: IPR	92.19
COG2888	61	Predicted Zn-ribbon RNA-binding protein with a fun	92.11
PHA00626	59	hypothetical protein	92.1
PF08274	30	PhnA_Zn_Ribbon: PhnA Zinc-Ribbon ; InterPro: IPR01	92.09
PF08271	43	TF_Zn_Ribbon: TFIIB zinc-binding; InterPro: IPR013	92.09
COG1565	370	Uncharacterized conserved protein [Function unknow	91.98
PF09297	32	zf-NADH-PPase: NADH pyrophosphatase zinc ribbon do	91.92
PRK01747	662	mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltrans	91.88
COG3129	292	Predicted SAM-dependent methyltransferase [General	91.75
COG1645	131	Uncharacterized Zn-finger containing protein [Gene	91.62
KOG2198	375	consensus tRNA cytosine-5-methylases and related e	91.49
PF14353	128	CpXC: CpXC protein	91.33
KOG2352	482	consensus Predicted spermine/spermidine synthase [	91.27
PF14446	54	Prok-RING_1: Prokaryotic RING finger family 1	91.23
cd05188	271	MDR Medium chain reductase/dehydrogenase (MDR)/zin	91.14
PF09862	113	DUF2089: Protein of unknown function (DUF2089); In	90.93
PF10354	166	DUF2431: Domain of unknown function (DUF2431); Int	90.82
KOG2651	476	consensus rRNA adenine N-6-methyltransferase [RNA	90.79
COG1656	165	Uncharacterized conserved protein [Function unknow	90.75
COG1198	730	PriA Primosomal protein N' (replication factor Y)	90.63
PF13453	41	zf-TFIIB: Transcription factor zinc-finger	90.62
PRK10742	250	putative methyltransferase; Provisional	90.56
PF01927	147	Mut7-C: Mut7-C RNAse domain; InterPro: IPR002782 T	90.31
COG4301	321	Uncharacterized conserved protein [Function unknow	90.29
PRK09880	343	L-idonate 5-dehydrogenase; Provisional	89.87
PF11781	36	RRN7: RNA polymerase I-specific transcription init	89.62
cd08237	341	ribitol-5-phosphate_DH ribitol-5-phosphate dehydro	89.51
PRK13699	227	putative methylase; Provisional	89.24
PF01780	90	Ribosomal_L37ae: Ribosomal L37ae protein family; I	89.13
KOG1501	636	consensus Arginine N-methyltransferase [General fu	89.12
PF01096	39	TFIIS_C: Transcription factor S-II (TFIIS); InterP	89.05
PRK00398	46	rpoP DNA-directed RNA polymerase subunit P; Provis	88.99
cd08254	338	hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carbo	88.96
TIGR02822	329	adh_fam_2 zinc-binding alcohol dehydrogenase famil	88.79
TIGR01202	308	bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyl	88.52
PF07652	148	Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR	88.41
PF00107	130	ADH_zinc_N: Zinc-binding dehydrogenase; InterPro:	88.29
PRK00464	154	nrdR transcriptional regulator NrdR; Validated	87.88
COG3510	237	CmcI Cephalosporin hydroxylase [Defense mechanisms	87.78
PF11253	127	DUF3052: Protein of unknown function (DUF3052); In	87.48
TIGR00561	511	pntA NAD(P) transhydrogenase, alpha subunit. In so	87.28
PF14354	61	Lar_restr_allev: Restriction alleviation protein L	87.2
PRK14890	59	putative Zn-ribbon RNA-binding protein; Provisiona	87.12
PF07191	70	zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807	87.07
PF13240	23	zinc_ribbon_2: zinc-ribbon domain	87.05
TIGR00686	109	phnA alkylphosphonate utilization operon protein P	86.98
TIGR03655	53	anti_R_Lar restriction alleviation protein, Lar fa	86.96
PRK10220	111	hypothetical protein; Provisional	86.93
smart00440	40	ZnF_C2C2 C2C2 Zinc finger. Nucleic-acid-binding mo	86.83
TIGR00595	505	priA primosomal protein N'. All proteins in this f	86.76
TIGR03831	46	YgiT_finger YgiT-type zinc finger domain. This dom	86.64
PF13248	26	zf-ribbon_3: zinc-ribbon domain	86.55
PF03119	28	DNA_ligase_ZBD: NAD-dependent DNA ligase C4 zinc f	86.46
PRK05580	679	primosome assembly protein PriA; Validated	86.43
cd00315	275	Cyt_C5_DNA_methylase Cytosine-C5 specific DNA meth	86.39
COG1867	380	TRM1 N2,N2-dimethylguanosine tRNA methyltransferas	86.35
smart00661	52	RPOL9 RNA polymerase subunit 9.	86.31
PTZ00255	90	60S ribosomal protein L37a; Provisional	86.27
COG1326	201	Uncharacterized archaeal Zn-finger protein [Genera	86.24
PF08792	33	A2L_zn_ribbon: A2L zinc ribbon domain; InterPro: I	86.2
PF14740	289	DUF4471: Domain of unknown function (DUF4471)	86.16
PF02005	377	TRM: N2,N2-dimethylguanosine tRNA methyltransferas	85.96
TIGR00280	91	L37a ribosomal protein L37a. This model finds euka	85.92
PF04445	234	SAM_MT: Putative SAM-dependent methyltransferase;	85.27
PRK00432	50	30S ribosomal protein S27ae; Validated	84.79
cd05213	311	NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain	84.48
PRK03976	90	rpl37ae 50S ribosomal protein L37Ae; Reviewed	84.47
smart00659	44	RPOLCX RNA polymerase subunit CX. present in RNA p	84.36
KOG3507	62	consensus DNA-directed RNA polymerase, subunit RPB	84.2
PF11899	380	DUF3419: Protein of unknown function (DUF3419); In	84.18
cd08230	355	glucose_DH Glucose dehydrogenase. Glucose dehydrog	84.14
TIGR03451	358	mycoS_dep_FDH mycothiol-dependent formaldehyde deh	83.39
KOG1253	525	consensus tRNA methyltransferase [Translation, rib	83.08
PF06677	41	Auto_anti-p27: Sjogren's syndrome/scleroderma auto	82.96
KOG1227	351	consensus Putative methyltransferase [General func	82.93
PRK00415	59	rps27e 30S ribosomal protein S27e; Reviewed	82.77
PF03604	32	DNA_RNApol_7kD: DNA directed RNA polymerase, 7 kDa	82.68
KOG1088	124	consensus Uncharacterized conserved protein [Funct	82.33
TIGR03366	280	HpnZ_proposed putative phosphonate catabolism asso	82.0
PF09538	108	FYDLN_acid: Protein of unknown function (FYDLN_aci	81.81
KOG2782	303	consensus Putative SAM dependent methyltransferase	81.44
COG4306	160	Uncharacterized protein conserved in bacteria [Fun	81.42
PF03811	36	Zn_Tnp_IS1: InsA N-terminal domain; InterPro: IPR0	81.34
cd00401	413	AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado	81.25
PF09986	214	DUF2225: Uncharacterized protein conserved in bact	81.24
cd08281	371	liver_ADH_like1 Zinc-dependent alcohol dehydrogena	80.86
PF05206	259	TRM13: Methyltransferase TRM13; InterPro: IPR00787	80.75
PF05129	81	Elf1: Transcription elongation factor Elf1 like; I	80.44
PF14205	55	Cys_rich_KTR: Cysteine-rich KTR	80.41
KOG2918	335	consensus Carboxymethyl transferase [Posttranslati	80.39
COG3877	122	Uncharacterized protein conserved in bacteria [Fun	80.25

>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]

Probab=99.93  E-value=2.1e-24  Score=187.63  Aligned_cols=193  Identities=24%  Similarity=0.348  Sum_probs=152.1

Q ss_pred             ccccccCCCCCcCcccccchhhccCchhHHHHHHhHHHhhHhcCCCCcHHHHHHHHcccCCCCCCcEEEECCCcCHHHHH
Q 019861          115 FDMTAASGSKDYGELMSPATEFFRMPFMSFIYERGWRQNFVWGGFPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRI  194 (334)
Q Consensus       115 ~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~  194 (334)
                      +..+++.....|+.+         |+++|++.++.|++...               ..+...+|.+|||||||||.++..
T Consensus        13 v~~vF~~ia~~YD~~---------n~~~S~g~~~~Wr~~~i---------------~~~~~~~g~~vLDva~GTGd~a~~   68 (238)
T COG2226          13 VQKVFDKVAKKYDLM---------NDLMSFGLHRLWRRALI---------------SLLGIKPGDKVLDVACGTGDMALL   68 (238)
T ss_pred             HHHHHHhhHHHHHhh---------cccccCcchHHHHHHHH---------------HhhCCCCCCEEEEecCCccHHHHH
Confidence            344555666677777         89999999999998654               233334789999999999999999


Q ss_pred             HHHcCCCCeEEEEeCCHHHHHHHHHHHhcC--------------CCCCCCCceEEEeCccccCCCCHHHHHHHHHHcccC
Q 019861          195 FAKSGLFSLVVALDYSENMLKQCYEFVQQE--------------SNFPKDSIDAVHAGAAIHCWSSPSTGVAEISRVLRP  260 (334)
Q Consensus       195 l~~~~~~~~v~giD~s~~~~~~a~~~~~~~--------------~~~~~~~fD~V~~~~vl~h~~d~~~~L~~i~r~Lkp  260 (334)
                      +++....++++|+|+|+.|++.++++....              .||+|++||+|++.+.|++++|+..+|+|++|+|||
T Consensus        69 ~~k~~g~g~v~~~D~s~~ML~~a~~k~~~~~~~~i~fv~~dAe~LPf~D~sFD~vt~~fglrnv~d~~~aL~E~~RVlKp  148 (238)
T COG2226          69 LAKSVGTGEVVGLDISESMLEVAREKLKKKGVQNVEFVVGDAENLPFPDNSFDAVTISFGLRNVTDIDKALKEMYRVLKP  148 (238)
T ss_pred             HHHhcCCceEEEEECCHHHHHHHHHHhhccCccceEEEEechhhCCCCCCccCEEEeeehhhcCCCHHHHHHHHHHhhcC
Confidence            999866789999999999999999987752              389999999999999999999999999999999999


Q ss_pred             CcEEEEEEeccCCCCCchHHHHHHHHH-hhhh----------------cCccCCCCHHHHHHHHHhCCCcEEE--EeecC
Q 019861          261 GGVFVGTTYIVDGPFNLIPFSRLLRQN-MMQI----------------SGSYTFLSEREIEDLCRACGLVDFK--CTRNR  321 (334)
Q Consensus       261 gG~lii~~~~~~~~~~~~~~~~~~~~~-~~~~----------------~~~~~~~t~~~l~~ll~~~Gf~~v~--~~~~g  321 (334)
                      ||++++.+............+..+... ....                .....+.+.+++.++++++||+.+.  ....|
T Consensus       149 gG~~~vle~~~p~~~~~~~~~~~~~~~~v~P~~g~~~~~~~~~y~yL~eSi~~~p~~~~l~~~~~~~gf~~i~~~~~~~G  228 (238)
T COG2226         149 GGRLLVLEFSKPDNPVLRKAYILYYFKYVLPLIGKLVAKDAEAYEYLAESIRRFPDQEELKQMIEKAGFEEVRYENLTFG  228 (238)
T ss_pred             CeEEEEEEcCCCCchhhHHHHHHHHHHhHhhhhceeeecChHHHHHHHHHHHhCCCHHHHHHHHHhcCceEEeeEeeeee
Confidence            999999888875432332222221111 1110                1123477899999999999998766  66789


Q ss_pred             cEEEEEEEcC
Q 019861          322 GFVMFTATKP  331 (334)
Q Consensus       322 ~~~~~~a~K~  331 (334)
                      ...++++.|+
T Consensus       229 ~~~l~~g~K~  238 (238)
T COG2226         229 IVALHRGYKP  238 (238)
T ss_pred             eEEEEEEecC
Confidence            9999999885

>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []

Probab=99.92  E-value=3.2e-25  Score=194.60  Aligned_cols=193  Identities=23%  Similarity=0.354  Sum_probs=82.4

Q ss_pred             cccccccCCCCCcCcccccchhhccCchhHHHHHHhHHHhhHhcCCCCcHHHHHHHHcccCCCCCCcEEEECCCcCHHHH
Q 019861          114 HFDMTAASGSKDYGELMSPATEFFRMPFMSFIYERGWRQNFVWGGFPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSR  193 (334)
Q Consensus       114 ~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~  193 (334)
                      .+..+++.....|+..         |.+++++.++.|++...               +.+...++.+|||+|||+|.++.
T Consensus         8 ~v~~~Fd~ia~~YD~~---------n~~ls~g~~~~wr~~~~---------------~~~~~~~g~~vLDv~~GtG~~~~   63 (233)
T PF01209_consen    8 YVRKMFDRIAPRYDRM---------NDLLSFGQDRRWRRKLI---------------KLLGLRPGDRVLDVACGTGDVTR   63 (233)
T ss_dssp             --------------------------------------SHHH---------------HHHT--S--EEEEET-TTSHHHH
T ss_pred             HHHHHHHHHHHHhCCC---------ccccCCcHHHHHHHHHH---------------hccCCCCCCEEEEeCCChHHHHH
Confidence            3445666667777777         88899999999997543               23445668899999999999999


Q ss_pred             HHHHc-CCCCeEEEEeCCHHHHHHHHHHHhcC--------------CCCCCCCceEEEeCccccCCCCHHHHHHHHHHcc
Q 019861          194 IFAKS-GLFSLVVALDYSENMLKQCYEFVQQE--------------SNFPKDSIDAVHAGAAIHCWSSPSTGVAEISRVL  258 (334)
Q Consensus       194 ~l~~~-~~~~~v~giD~s~~~~~~a~~~~~~~--------------~~~~~~~fD~V~~~~vl~h~~d~~~~L~~i~r~L  258 (334)
                      .+++. ++..+|+|+|+|+.|++.|+++....              .|+++++||+|++.+.|++++|+..+|+|++|+|
T Consensus        64 ~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~~i~~v~~da~~lp~~d~sfD~v~~~fglrn~~d~~~~l~E~~RVL  143 (233)
T PF01209_consen   64 ELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQNIEFVQGDAEDLPFPDNSFDAVTCSFGLRNFPDRERALREMYRVL  143 (233)
T ss_dssp             HHGGGSS---EEEEEES-HHHHHHHHHHHHHTT--SEEEEE-BTTB--S-TT-EEEEEEES-GGG-SSHHHHHHHHHHHE
T ss_pred             HHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCCCeeEEEcCHHHhcCCCCceeEEEHHhhHHhhCCHHHHHHHHHHHc
Confidence            99876 55679999999999999999886532              3788999999999999999999999999999999


Q ss_pred             cCCcEEEEEEeccCCCCCchHHHHHHHHHhhh----------------hcCccCCCCHHHHHHHHHhCCCcEEE--Eeec
Q 019861          259 RPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQ----------------ISGSYTFLSEREIEDLCRACGLVDFK--CTRN  320 (334)
Q Consensus       259 kpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~t~~~l~~ll~~~Gf~~v~--~~~~  320 (334)
                      ||||++++.+...........+...+...+..                ......+.+.+++.++++++||+.++  ....
T Consensus       144 kPGG~l~ile~~~p~~~~~~~~~~~y~~~ilP~~g~l~~~~~~~Y~yL~~Si~~f~~~~~~~~~l~~~Gf~~v~~~~~~~  223 (233)
T PF01209_consen  144 KPGGRLVILEFSKPRNPLLRALYKFYFKYILPLIGRLLSGDREAYRYLPESIRRFPSPEELKELLEEAGFKNVEYRPLTF  223 (233)
T ss_dssp             EEEEEEEEEEEEB-SSHHHHHHHHH-------------------------------------------------------
T ss_pred             CCCeEEEEeeccCCCCchhhceeeeeeccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            99999999998875431111111111111100                01233567899999999999999776  5678


Q ss_pred             CcEEEEEEEc
Q 019861          321 RGFVMFTATK  330 (334)
Q Consensus       321 g~~~~~~a~K  330 (334)
                      |...++++.|
T Consensus       224 G~~~i~~g~K  233 (233)
T PF01209_consen  224 GIVTIHVGTK  233 (233)
T ss_dssp             ----------
T ss_pred             ccccccccCC
Confidence            8888888876

Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.

>PLN02233 ubiquinone biosynthesis methyltransferase

Probab=99.89  E-value=4.9e-22  Score=178.09  Aligned_cols=159  Identities=20%  Similarity=0.277  Sum_probs=118.0

Q ss_pred             ccCCCCCCcEEEECCCcCHHHHHHHHc-CCCCeEEEEeCCHHHHHHHHHHHh-----------------cCCCCCCCCce
Q 019861          172 YLKPVLGGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQ-----------------QESNFPKDSID  233 (334)
Q Consensus       172 ~l~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~~v~giD~s~~~~~~a~~~~~-----------------~~~~~~~~~fD  233 (334)
                      .+...++.+|||+|||+|.++..+++. ++..+++|+|+|+.|++.|+++..                 ...++++++||
T Consensus        68 ~~~~~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp~~~~sfD  147 (261)
T PLN02233         68 WSGAKMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDLPFDDCYFD  147 (261)
T ss_pred             HhCCCCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccCCCCCCCEe
Confidence            344456789999999999999988876 455699999999999999986542                 01257788999


Q ss_pred             EEEeCccccCCCCHHHHHHHHHHcccCCcEEEEEEeccCCCCCchHHHHHHHHH----hh---h--------hcCccCCC
Q 019861          234 AVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQN----MM---Q--------ISGSYTFL  298 (334)
Q Consensus       234 ~V~~~~vl~h~~d~~~~L~~i~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~----~~---~--------~~~~~~~~  298 (334)
                      +|++.++++|++|+..+|++++|+|||||.+++.++.........+....+...    ..   .        .....+++
T Consensus       148 ~V~~~~~l~~~~d~~~~l~ei~rvLkpGG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~l~~s~~~f~  227 (261)
T PLN02233        148 AITMGYGLRNVVDRLKAMQEMYRVLKPGSRVSILDFNKSTQPFTTSMQEWMIDNVVVPVATGYGLAKEYEYLKSSINEYL  227 (261)
T ss_pred             EEEEecccccCCCHHHHHHHHHHHcCcCcEEEEEECCCCCcHHHHHHHHHHHhhhhhHHHHHhCChHHHHHHHHHHHhcC
Confidence            999999999999999999999999999999999988765321111111111000    00   0        00123578


Q ss_pred             CHHHHHHHHHhCCCcEEEE--eecCcEEEEEEEc
Q 019861          299 SEREIEDLCRACGLVDFKC--TRNRGFVMFTATK  330 (334)
Q Consensus       299 t~~~l~~ll~~~Gf~~v~~--~~~g~~~~~~a~K  330 (334)
                      +.+++.++++++||++++.  ...|...++++++
T Consensus       228 s~~el~~ll~~aGF~~~~~~~~~~g~~~~~~~~~  261 (261)
T PLN02233        228 TGEELEKLALEAGFSSAKHYEISGGLMGNLVATR  261 (261)
T ss_pred             CHHHHHHHHHHCCCCEEEEEEcCCCeeEEEEEeC
Confidence            9999999999999998874  3456667777654

>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase

Probab=99.85  E-value=3.8e-20  Score=163.28  Aligned_cols=163  Identities=22%  Similarity=0.258  Sum_probs=121.5

Q ss_pred             HHHcccCCCCCCcEEEECCCcCHHHHHHHHc-CCCCeEEEEeCCHHHHHHHHHHHhcC--------------CCCCCCCc
Q 019861          168 LMKGYLKPVLGGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQQE--------------SNFPKDSI  232 (334)
Q Consensus       168 ~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~~v~giD~s~~~~~~a~~~~~~~--------------~~~~~~~f  232 (334)
                      .+...+...++.+|||+|||+|.++..+++. ++..+++|+|+++.+++.++++....              .++++++|
T Consensus        36 ~~l~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~f  115 (231)
T TIGR02752        36 DTMKRMNVQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGLHNVELVHGNAMELPFDDNSF  115 (231)
T ss_pred             HHHHhcCCCCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEechhcCCCCCCCc
Confidence            4445566667889999999999999999876 45569999999999999999876421              13567899


Q ss_pred             eEEEeCccccCCCCHHHHHHHHHHcccCCcEEEEEEeccCCCCCch-----------HHHHHHH-----HHhhhhcCccC
Q 019861          233 DAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLI-----------PFSRLLR-----QNMMQISGSYT  296 (334)
Q Consensus       233 D~V~~~~vl~h~~d~~~~L~~i~r~LkpgG~lii~~~~~~~~~~~~-----------~~~~~~~-----~~~~~~~~~~~  296 (334)
                      |+|++..+++|++++..+|+++.++|+|||++++.+..........           +......     ...........
T Consensus       116 D~V~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~  195 (231)
T TIGR02752       116 DYVTIGFGLRNVPDYMQVLREMYRVVKPGGKVVCLETSQPTIPGFKQLYFFYFKYIMPLFGKLFAKSYKEYSWLQESTRD  195 (231)
T ss_pred             cEEEEecccccCCCHHHHHHHHHHHcCcCeEEEEEECCCCCChHHHHHHHHHHcChhHHhhHHhcCCHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999998876543221111           1100000     00000012346


Q ss_pred             CCCHHHHHHHHHhCCCcEEE--EeecCcEEEEEEEc
Q 019861          297 FLSEREIEDLCRACGLVDFK--CTRNRGFVMFTATK  330 (334)
Q Consensus       297 ~~t~~~l~~ll~~~Gf~~v~--~~~~g~~~~~~a~K  330 (334)
                      +++.+++.++++++||++++  ....|...++++.|
T Consensus       196 ~~~~~~l~~~l~~aGf~~~~~~~~~~g~~~~~~~~~  231 (231)
T TIGR02752       196 FPGMDELAEMFQEAGFKDVEVKSYTGGVAAMHMGFK  231 (231)
T ss_pred             cCCHHHHHHHHHHcCCCeeEEEEcccceEEEEEEEC
Confidence            78999999999999999876  44568888888876

MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.

>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional

Probab=99.84  E-value=1.1e-20  Score=170.58  Aligned_cols=170  Identities=22%  Similarity=0.314  Sum_probs=116.9

Q ss_pred             ceeCCCCCCCccccCCCCcccccccCCcccccccccccccccCcccccccCCCCCcCcccccchhhccCchhHHHHHHhH
Q 019861           71 VLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSGVGTHFDMTAASGSKDYGELMSPATEFFRMPFMSFIYERGW  150 (334)
Q Consensus        71 ~l~CPiC~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~w  150 (334)
                      .|.||+|+.++....           ..++|+++|+++..++||+++++............  .+         ....  
T Consensus         2 ~~~CP~C~~~l~~~~-----------~~~~C~~~h~fd~a~~Gy~~ll~~~~~~~~~~~d~--~~---------~~~a--   57 (272)
T PRK11088          2 SYQCPLCHQPLTLEE-----------NSWICPQNHQFDCAKEGYVNLLPVQHKRSKDPGDN--KE---------MMQA--   57 (272)
T ss_pred             cccCCCCCcchhcCC-----------CEEEcCCCCCCccccCceEEeccccccCCCCCCcC--HH---------HHHH--
Confidence            489999999986533           56999999999999999999997432222111100  00         0011  


Q ss_pred             HHhhHhcCCCCcH--HHHHHHHcccCCCCCCcEEEECCCcCHHHHHHHHcCCC---CeEEEEeCCHHHHHHHHHHHhc--
Q 019861          151 RQNFVWGGFPGPE--KEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLF---SLVVALDYSENMLKQCYEFVQQ--  223 (334)
Q Consensus       151 ~~~~~~~~~~~~~--~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~---~~v~giD~s~~~~~~a~~~~~~--  223 (334)
                      |+.+.+.+++.+.  ...+.+.+.+. ....+|||+|||+|.++..+++..+.   ..++|+|+|+.+++.|+++...  
T Consensus        58 r~~fl~~g~y~~l~~~i~~~l~~~l~-~~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~~~~~  136 (272)
T PRK11088         58 RRAFLDAGHYQPLRDAVANLLAERLD-EKATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRYPQVT  136 (272)
T ss_pred             HHHHHHCCChHHHHHHHHHHHHHhcC-CCCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhCCCCe
Confidence            2334444443221  22233444443 24578999999999999999876432   3789999999999999876432  


Q ss_pred             -------CCCCCCCCceEEEeCccccCCCCHHHHHHHHHHcccCCcEEEEEEeccC
Q 019861          224 -------ESNFPKDSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVD  272 (334)
Q Consensus       224 -------~~~~~~~~fD~V~~~~vl~h~~d~~~~L~~i~r~LkpgG~lii~~~~~~  272 (334)
                             ..++++++||+|++...-       ..++++.|+|||||++++.++...
T Consensus       137 ~~~~d~~~lp~~~~sfD~I~~~~~~-------~~~~e~~rvLkpgG~li~~~p~~~  185 (272)
T PRK11088        137 FCVASSHRLPFADQSLDAIIRIYAP-------CKAEELARVVKPGGIVITVTPGPR  185 (272)
T ss_pred             EEEeecccCCCcCCceeEEEEecCC-------CCHHHHHhhccCCCEEEEEeCCCc
Confidence                   226778999999987641       236899999999999999888754

>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C

Probab=99.84  E-value=1.3e-20  Score=156.32  Aligned_cols=133  Identities=28%  Similarity=0.453  Sum_probs=106.2

Q ss_pred             CCCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhc------CCCCCCCCceEEEeCccccCCCCHH
Q 019861          175 PVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQ------ESNFPKDSIDAVHAGAAIHCWSSPS  248 (334)
Q Consensus       175 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~------~~~~~~~~fD~V~~~~vl~h~~d~~  248 (334)
                      ..++.+|||||||+|.++..+++.+.  +++|+|+++.+++.  .....      ....++++||+|+++.+|+|++|+.
T Consensus        20 ~~~~~~vLDiGcG~G~~~~~l~~~~~--~~~g~D~~~~~~~~--~~~~~~~~~~~~~~~~~~~fD~i~~~~~l~~~~d~~   95 (161)
T PF13489_consen   20 LKPGKRVLDIGCGTGSFLRALAKRGF--EVTGVDISPQMIEK--RNVVFDNFDAQDPPFPDGSFDLIICNDVLEHLPDPE   95 (161)
T ss_dssp             TTTTSEEEEESSTTSHHHHHHHHTTS--EEEEEESSHHHHHH--TTSEEEEEECHTHHCHSSSEEEEEEESSGGGSSHHH
T ss_pred             cCCCCEEEEEcCCCCHHHHHHHHhCC--EEEEEECCHHHHhh--hhhhhhhhhhhhhhccccchhhHhhHHHHhhcccHH
Confidence            35578999999999999999988887  99999999999887  11000      1135678999999999999999999


Q ss_pred             HHHHHHHHcccCCcEEEEEEeccCCCCCchHHHHHHHHH-h-hhhcCccCCCCHHHHHHHHHhCCCcEEE
Q 019861          249 TGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQN-M-MQISGSYTFLSEREIEDLCRACGLVDFK  316 (334)
Q Consensus       249 ~~L~~i~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~t~~~l~~ll~~~Gf~~v~  316 (334)
                      .+|+++.++|||||++++.+++...     .....+..+ + .....|..+++.+++.++++++||++++
T Consensus        96 ~~l~~l~~~LkpgG~l~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~G~~iv~  160 (161)
T PF13489_consen   96 EFLKELSRLLKPGGYLVISDPNRDD-----PSPRSFLKWRYDRPYGGHVHFFSPDELRQLLEQAGFEIVE  160 (161)
T ss_dssp             HHHHHHHHCEEEEEEEEEEEEBTTS-----HHHHHHHHCCGTCHHTTTTEEBBHHHHHHHHHHTTEEEEE
T ss_pred             HHHHHHHHhcCCCCEEEEEEcCCcc-----hhhhHHHhcCCcCccCceeccCCHHHHHHHHHHCCCEEEE
Confidence            9999999999999999999998642     111111111 1 1112578899999999999999999886

...

>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]

Probab=99.83  E-value=6.1e-20  Score=156.94  Aligned_cols=191  Identities=21%  Similarity=0.228  Sum_probs=144.3

Q ss_pred             cccccCCCCCcCcccccchhhccCchhHHHHHHhHHHhhHhcCCCCcHHHHHHHHcccCCCCCCcEEEECCCcCHHHHHH
Q 019861          116 DMTAASGSKDYGELMSPATEFFRMPFMSFIYERGWRQNFVWGGFPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIF  195 (334)
Q Consensus       116 ~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l  195 (334)
                      ..+++.....|+.+         |+.++.+.++.|+..+.               ..+.+.++.++||++||+|..+..+
T Consensus        63 ~~vF~~vA~~YD~m---------ND~mSlGiHRlWKd~~v---------------~~L~p~~~m~~lDvaGGTGDiaFri  118 (296)
T KOG1540|consen   63 HHVFESVAKKYDIM---------NDAMSLGIHRLWKDMFV---------------SKLGPGKGMKVLDVAGGTGDIAFRI  118 (296)
T ss_pred             HHHHHHHHHHHHHH---------HHHhhcchhHHHHHHhh---------------hccCCCCCCeEEEecCCcchhHHHH
Confidence            34555566667777         88999999999976554               4577778899999999999998888


Q ss_pred             HHcCCC------CeEEEEeCCHHHHHHHHHHHhc-----------------CCCCCCCCceEEEeCccccCCCCHHHHHH
Q 019861          196 AKSGLF------SLVVALDYSENMLKQCYEFVQQ-----------------ESNFPKDSIDAVHAGAAIHCWSSPSTGVA  252 (334)
Q Consensus       196 ~~~~~~------~~v~giD~s~~~~~~a~~~~~~-----------------~~~~~~~~fD~V~~~~vl~h~~d~~~~L~  252 (334)
                      .+.-..      .+|++.|+|+.|+..++++...                 +.||++++||..++.+.|..++++..+|+
T Consensus       119 l~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dAE~LpFdd~s~D~yTiafGIRN~th~~k~l~  198 (296)
T KOG1540|consen  119 LRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGDAEDLPFDDDSFDAYTIAFGIRNVTHIQKALR  198 (296)
T ss_pred             HHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeCCcccCCCCCCcceeEEEecceecCCCHHHHHH
Confidence            776433      6899999999999999987632                 23799999999999999999999999999


Q ss_pred             HHHHcccCCcEEEEEEeccCCCCCchHHHHHHH--------HHhhhh--------cCccCCCCHHHHHHHHHhCCCcEEE
Q 019861          253 EISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLR--------QNMMQI--------SGSYTFLSEREIEDLCRACGLVDFK  316 (334)
Q Consensus       253 ~i~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~--------~~~~~~--------~~~~~~~t~~~l~~ll~~~Gf~~v~  316 (334)
                      +++|+|||||++.+.++..........+...+.        ..+...        ....++.+.+++..+.+++||..+.
T Consensus       199 EAYRVLKpGGrf~cLeFskv~~~~l~~fy~~ysf~VlpvlG~~iagd~~sYqYLveSI~rfp~qe~f~~miedaGF~~~~  278 (296)
T KOG1540|consen  199 EAYRVLKPGGRFSCLEFSKVENEPLKWFYDQYSFDVLPVLGEIIAGDRKSYQYLVESIRRFPPQEEFASMIEDAGFSSVN  278 (296)
T ss_pred             HHHHhcCCCcEEEEEEccccccHHHHHHHHhhhhhhhchhhHhhhhhHhhhhhHHhhhhcCCCHHHHHHHHHHcCCcccc
Confidence            999999999999998887654222222221111        111111        1234678899999999999998875


Q ss_pred             ---EeecCcEEEEEEEc
Q 019861          317 ---CTRNRGFVMFTATK  330 (334)
Q Consensus       317 ---~~~~g~~~~~~a~K  330 (334)
                         ..+.|...++.+-|
T Consensus       279 ~ye~lt~Gv~aIH~giK  295 (296)
T KOG1540|consen  279 GYENLTFGVVAIHSGIK  295 (296)
T ss_pred             ccccceeeeeeeehhcc
Confidence               44556666655544

>PLN02244 tocopherol O-methyltransferase

Probab=99.83  E-value=7.3e-19  Score=163.42  Aligned_cols=143  Identities=21%  Similarity=0.209  Sum_probs=108.5

Q ss_pred             CCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcC---------------CCCCCCCceEEEeCcc
Q 019861          176 VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQE---------------SNFPKDSIDAVHAGAA  240 (334)
Q Consensus       176 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~---------------~~~~~~~fD~V~~~~v  240 (334)
                      .++.+|||||||+|.++..+++.. ..+|+|+|+++.+++.++++....               .++++++||+|++..+
T Consensus       117 ~~~~~VLDiGCG~G~~~~~La~~~-g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~FD~V~s~~~  195 (340)
T PLN02244        117 KRPKRIVDVGCGIGGSSRYLARKY-GANVKGITLSPVQAARANALAAAQGLSDKVSFQVADALNQPFEDGQFDLVWSMES  195 (340)
T ss_pred             CCCCeEEEecCCCCHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCcccCCCCCCCccEEEECCc
Confidence            567899999999999999999875 459999999999999998765421               1567889999999999


Q ss_pred             ccCCCCHHHHHHHHHHcccCCcEEEEEEeccCCCC----CchHHHHHHHHHhhhhcCccCCCCHHHHHHHHHhCCCcEEE
Q 019861          241 IHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPF----NLIPFSRLLRQNMMQISGSYTFLSEREIEDLCRACGLVDFK  316 (334)
Q Consensus       241 l~h~~d~~~~L~~i~r~LkpgG~lii~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~t~~~l~~ll~~~Gf~~v~  316 (334)
                      ++|++|+..+++++.++|||||++++.++......    ...+........+........+.+.+++.++++++||++++
T Consensus       196 ~~h~~d~~~~l~e~~rvLkpGG~lvi~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~p~~~s~~~~~~~l~~aGf~~v~  275 (340)
T PLN02244        196 GEHMPDKRKFVQELARVAAPGGRIIIVTWCHRDLEPGETSLKPDEQKLLDKICAAYYLPAWCSTSDYVKLAESLGLQDIK  275 (340)
T ss_pred             hhccCCHHHHHHHHHHHcCCCcEEEEEEecccccccccccCCHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHCCCCeeE
Confidence            99999999999999999999999999887543221    11111111111111111133456899999999999999987


Q ss_pred             Eee
Q 019861          317 CTR  319 (334)
Q Consensus       317 ~~~  319 (334)
                      ...
T Consensus       276 ~~d  278 (340)
T PLN02244        276 TED  278 (340)
T ss_pred             eee
Confidence            543

>PLN02396 hexaprenyldihydroxybenzoate methyltransferase

Probab=99.81  E-value=4.5e-19  Score=162.33  Aligned_cols=140  Identities=18%  Similarity=0.164  Sum_probs=106.1

Q ss_pred             CCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcC---------------CCCCCCCceEEEeCcc
Q 019861          176 VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQE---------------SNFPKDSIDAVHAGAA  240 (334)
Q Consensus       176 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~---------------~~~~~~~fD~V~~~~v  240 (334)
                      .++.+|||||||+|.++..+++.+.  +|+|+|+++.+++.|+++....               .++++++||+|++.++
T Consensus       130 ~~g~~ILDIGCG~G~~s~~La~~g~--~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~~~~~~FD~Vi~~~v  207 (322)
T PLN02396        130 FEGLKFIDIGCGGGLLSEPLARMGA--TVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLADEGRKFDAVLSLEV  207 (322)
T ss_pred             CCCCEEEEeeCCCCHHHHHHHHcCC--EEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhhhccCCCCEEEEhhH
Confidence            3567999999999999999988765  9999999999999999765321               1345679999999999


Q ss_pred             ccCCCCHHHHHHHHHHcccCCcEEEEEEeccCCCCCchHH-HHHHHHHhhhhcCc--cCCCCHHHHHHHHHhCCCcEEEE
Q 019861          241 IHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPF-SRLLRQNMMQISGS--YTFLSEREIEDLCRACGLVDFKC  317 (334)
Q Consensus       241 l~h~~d~~~~L~~i~r~LkpgG~lii~~~~~~~~~~~~~~-~~~~~~~~~~~~~~--~~~~t~~~l~~ll~~~Gf~~v~~  317 (334)
                      |||+.|+..+|+++.++|||||.+++.+++.......... ...+...+.....|  ..+++++++.++++++||++++.
T Consensus       208 LeHv~d~~~~L~~l~r~LkPGG~liist~nr~~~~~~~~i~~~eyi~~~lp~gth~~~~f~tp~eL~~lL~~aGf~i~~~  287 (322)
T PLN02396        208 IEHVANPAEFCKSLSALTIPNGATVLSTINRTMRAYASTIVGAEYILRWLPKGTHQWSSFVTPEELSMILQRASVDVKEM  287 (322)
T ss_pred             HHhcCCHHHHHHHHHHHcCCCcEEEEEECCcCHHHHHHhhhhHHHHHhcCCCCCcCccCCCCHHHHHHHHHHcCCeEEEE
Confidence            9999999999999999999999999999886421000000 00011111111112  35789999999999999998874

>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]

Probab=99.80  E-value=2.8e-19  Score=153.06  Aligned_cols=135  Identities=16%  Similarity=0.239  Sum_probs=107.1

Q ss_pred             CCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCC-------------CCCCCCceEEEeCcccc
Q 019861          176 VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES-------------NFPKDSIDAVHAGAAIH  242 (334)
Q Consensus       176 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~-------------~~~~~~fD~V~~~~vl~  242 (334)
                      .++.+|||||||.|.++..+++.|.  .|+|+|+++.+++.|+.+....+             ....++||+|+|..|||
T Consensus        58 l~g~~vLDvGCGgG~Lse~mAr~Ga--~VtgiD~se~~I~~Ak~ha~e~gv~i~y~~~~~edl~~~~~~FDvV~cmEVlE  135 (243)
T COG2227          58 LPGLRVLDVGCGGGILSEPLARLGA--SVTGIDASEKPIEVAKLHALESGVNIDYRQATVEDLASAGGQFDVVTCMEVLE  135 (243)
T ss_pred             CCCCeEEEecCCccHhhHHHHHCCC--eeEEecCChHHHHHHHHhhhhccccccchhhhHHHHHhcCCCccEEEEhhHHH
Confidence            4689999999999999999999996  99999999999999997755433             12237999999999999


Q ss_pred             CCCCHHHHHHHHHHcccCCcEEEEEEeccCCCCCchHHHHH--HHHHhh---hhcC--ccCCCCHHHHHHHHHhCCCcEE
Q 019861          243 CWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRL--LRQNMM---QISG--SYTFLSEREIEDLCRACGLVDF  315 (334)
Q Consensus       243 h~~d~~~~L~~i~r~LkpgG~lii~~~~~~~~~~~~~~~~~--~~~~~~---~~~~--~~~~~t~~~l~~ll~~~Gf~~v  315 (334)
                      |++||..+++.+.+++||||.++++++++..    ..++..  ...++.   ....  ...+.-++++..++...|+++.
T Consensus       136 Hv~dp~~~~~~c~~lvkP~G~lf~STinrt~----ka~~~~i~~ae~vl~~vP~gTH~~~k~irp~El~~~~~~~~~~~~  211 (243)
T COG2227         136 HVPDPESFLRACAKLVKPGGILFLSTINRTL----KAYLLAIIGAEYVLRIVPKGTHDYRKFIKPAELIRWLLGANLKII  211 (243)
T ss_pred             ccCCHHHHHHHHHHHcCCCcEEEEeccccCH----HHHHHHHHHHHHHHHhcCCcchhHHHhcCHHHHHHhcccCCceEE
Confidence            9999999999999999999999999999742    222111  111111   1111  2347889999999999999877


Q ss_pred             E
Q 019861          316 K  316 (334)
Q Consensus       316 ~  316 (334)
                      +
T Consensus       212 ~  212 (243)
T COG2227         212 D  212 (243)
T ss_pred             e
Confidence            6

>PRK05785 hypothetical protein; Provisional

Probab=99.80  E-value=9.6e-19  Score=153.43  Aligned_cols=151  Identities=19%  Similarity=0.123  Sum_probs=108.2

Q ss_pred             CCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHh------cCCCCCCCCceEEEeCccccCCCCHHHHH
Q 019861          178 GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQ------QESNFPKDSIDAVHAGAAIHCWSSPSTGV  251 (334)
Q Consensus       178 ~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~------~~~~~~~~~fD~V~~~~vl~h~~d~~~~L  251 (334)
                      +.+|||+|||+|.++..+++.. ..+++|+|+|++|++.|+++..      ...|+++++||+|++..+|+|++|+..+|
T Consensus        52 ~~~VLDlGcGtG~~~~~l~~~~-~~~v~gvD~S~~Ml~~a~~~~~~~~~d~~~lp~~d~sfD~v~~~~~l~~~~d~~~~l  130 (226)
T PRK05785         52 PKKVLDVAAGKGELSYHFKKVF-KYYVVALDYAENMLKMNLVADDKVVGSFEALPFRDKSFDVVMSSFALHASDNIEKVI  130 (226)
T ss_pred             CCeEEEEcCCCCHHHHHHHHhc-CCEEEEECCCHHHHHHHHhccceEEechhhCCCCCCCEEEEEecChhhccCCHHHHH
Confidence            6799999999999999999885 3499999999999999987532      12378899999999999999999999999


Q ss_pred             HHHHHcccCCcEEEEEEeccCCCCCchHHHHHHHHHh--------hh--------hcCccCCCCHHHHHHHHHhC-CCcE
Q 019861          252 AEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNM--------MQ--------ISGSYTFLSEREIEDLCRAC-GLVD  314 (334)
Q Consensus       252 ~~i~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~--------~~--------~~~~~~~~t~~~l~~ll~~~-Gf~~  314 (334)
                      ++++|+|||.+ .++.....+.. ....+...+....        ..        ......+.+.+++.++++++ ++..
T Consensus       131 ~e~~RvLkp~~-~ile~~~p~~~-~~~~~~~~y~~~~~P~~~~~~~~~~~~Y~yl~~si~~f~~~~~~~~~~~~~~~~~~  208 (226)
T PRK05785        131 AEFTRVSRKQV-GFIAMGKPDNV-IKRKYLSFYLRYIMPYIACLAGAKCRDYKYIYYIYERLPTNSFHREIFEKYADIKV  208 (226)
T ss_pred             HHHHHHhcCce-EEEEeCCCCcH-HHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCHHHHHHHHHHHhCceE
Confidence            99999999942 22222221111 1111111111000        00        11233577899999999995 4444


Q ss_pred             EEEeecCcEEEEEEEcC
Q 019861          315 FKCTRNRGFVMFTATKP  331 (334)
Q Consensus       315 v~~~~~g~~~~~~a~K~  331 (334)
                      .+..+.|...+++++|.
T Consensus       209 ~~~~~~G~~~~~~~~k~  225 (226)
T PRK05785        209 YEERGLGLVYFVVGSSR  225 (226)
T ss_pred             EEEccccEEEEEEEeeC
Confidence            55678899999999884

>TIGR00452 methyltransferase, putative

Probab=99.79  E-value=3.9e-18  Score=155.53  Aligned_cols=146  Identities=21%  Similarity=0.326  Sum_probs=108.9

Q ss_pred             HHHcccCCCCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHH---HHhcCC----------CC-CCCCce
Q 019861          168 LMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYE---FVQQES----------NF-PKDSID  233 (334)
Q Consensus       168 ~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~---~~~~~~----------~~-~~~~fD  233 (334)
                      .+...+...++++|||||||+|.++..++..+. ..|+|+|+|+.|+.+++.   ......          .+ ...+||
T Consensus       112 ~~l~~l~~~~g~~VLDvGCG~G~~~~~~~~~g~-~~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~lp~~~~FD  190 (314)
T TIGR00452       112 RVLPHLSPLKGRTILDVGCGSGYHMWRMLGHGA-KSLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQLHELYAFD  190 (314)
T ss_pred             HHHHhcCCCCCCEEEEeccCCcHHHHHHHHcCC-CEEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHHHCCCCCCcC
Confidence            455566666788999999999999999988875 479999999999876432   211110          11 135899


Q ss_pred             EEEeCccccCCCCHHHHHHHHHHcccCCcEEEEEEeccCCCCCc--hHHHHHHHHHhhhhcCccCCCCHHHHHHHHHhCC
Q 019861          234 AVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNL--IPFSRLLRQNMMQISGSYTFLSEREIEDLCRACG  311 (334)
Q Consensus       234 ~V~~~~vl~h~~d~~~~L~~i~r~LkpgG~lii~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~t~~~l~~ll~~~G  311 (334)
                      +|++..+|+|+++|..+|++++++|+|||.+++.+...++....  .+.     ..+......+..++.+++..+|+++|
T Consensus       191 ~V~s~gvL~H~~dp~~~L~el~r~LkpGG~Lvletl~i~g~~~~~l~p~-----~ry~k~~nv~flpS~~~L~~~L~~aG  265 (314)
T TIGR00452       191 TVFSMGVLYHRKSPLEHLKQLKHQLVIKGELVLETLVIDGDLNTVLVPK-----DRYAKMKNVYFIPSVSALKNWLEKVG  265 (314)
T ss_pred             EEEEcchhhccCCHHHHHHHHHHhcCCCCEEEEEEEEecCccccccCch-----HHHHhccccccCCCHHHHHHHHHHCC
Confidence            99999999999999999999999999999999988766543211  111     11122223445679999999999999


Q ss_pred             CcEEEEee
Q 019861          312 LVDFKCTR  319 (334)
Q Consensus       312 f~~v~~~~  319 (334)
                      |++++...
T Consensus       266 F~~V~i~~  273 (314)
T TIGR00452       266 FENFRILD  273 (314)
T ss_pred             CeEEEEEe
Confidence            99998654

Known examples to date are restricted to the proteobacteria.

>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional

Probab=99.78  E-value=1.2e-17  Score=149.83  Aligned_cols=150  Identities=17%  Similarity=0.261  Sum_probs=115.6

Q ss_pred             HHHHHHHcccCCCCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcC------------CCCCCCC
Q 019861          164 KEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQE------------SNFPKDS  231 (334)
Q Consensus       164 ~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~------------~~~~~~~  231 (334)
                      +....+...+...++.+|||||||+|..+..++... ..+|+|+|+++.+++.++++....            .++++++
T Consensus        39 ~~~~~~l~~l~l~~~~~VLDiGcG~G~~a~~la~~~-~~~v~giD~s~~~~~~a~~~~~~~~~i~~~~~D~~~~~~~~~~  117 (263)
T PTZ00098         39 EATTKILSDIELNENSKVLDIGSGLGGGCKYINEKY-GAHVHGVDICEKMVNIAKLRNSDKNKIEFEANDILKKDFPENT  117 (263)
T ss_pred             HHHHHHHHhCCCCCCCEEEEEcCCCChhhHHHHhhc-CCEEEEEECCHHHHHHHHHHcCcCCceEEEECCcccCCCCCCC
Confidence            334556666777788999999999999998887753 359999999999999999875421            2467789


Q ss_pred             ceEEEeCccccCCC--CHHHHHHHHHHcccCCcEEEEEEeccCCCCCchHHHHHHHHHhhhhcCccCCCCHHHHHHHHHh
Q 019861          232 IDAVHAGAAIHCWS--SPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLCRA  309 (334)
Q Consensus       232 fD~V~~~~vl~h~~--d~~~~L~~i~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~l~~ll~~  309 (334)
                      ||+|++..+++|++  ++..+|++++++|||||++++.++.......   +..........  ....+.+.+++.++|++
T Consensus       118 FD~V~s~~~l~h~~~~d~~~~l~~i~r~LkPGG~lvi~d~~~~~~~~---~~~~~~~~~~~--~~~~~~~~~~~~~~l~~  192 (263)
T PTZ00098        118 FDMIYSRDAILHLSYADKKKLFEKCYKWLKPNGILLITDYCADKIEN---WDEEFKAYIKK--RKYTLIPIQEYGDLIKS  192 (263)
T ss_pred             eEEEEEhhhHHhCCHHHHHHHHHHHHHHcCCCcEEEEEEeccccccC---cHHHHHHHHHh--cCCCCCCHHHHHHHHHH
Confidence            99999999999987  7889999999999999999999886543211   11111111111  23456799999999999


Q ss_pred             CCCcEEEEee
Q 019861          310 CGLVDFKCTR  319 (334)
Q Consensus       310 ~Gf~~v~~~~  319 (334)
                      +||++++...
T Consensus       193 aGF~~v~~~d  202 (263)
T PTZ00098        193 CNFQNVVAKD  202 (263)
T ss_pred             CCCCeeeEEe
Confidence            9999988654

>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=99.78  E-value=4.1e-18  Score=152.50  Aligned_cols=152  Identities=18%  Similarity=0.222  Sum_probs=110.9

Q ss_pred             HHcccCCCCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCC----------------CCCCCCc
Q 019861          169 MKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES----------------NFPKDSI  232 (334)
Q Consensus       169 l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~----------------~~~~~~f  232 (334)
                      +...+. .++.+|||+|||+|.++..+++.+.  +|+|+|+|+.+++.|+++.....                ++.+++|
T Consensus        37 ~l~~l~-~~~~~vLDiGcG~G~~a~~la~~g~--~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~~~~~~f  113 (255)
T PRK11036         37 LLAELP-PRPLRVLDAGGGEGQTAIKLAELGH--QVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQHLETPV  113 (255)
T ss_pred             HHHhcC-CCCCEEEEeCCCchHHHHHHHHcCC--EEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhhhcCCCC
Confidence            344444 3467999999999999999999876  99999999999999998764321                2446799


Q ss_pred             eEEEeCccccCCCCHHHHHHHHHHcccCCcEEEEEEeccCCCCCchHHHH----HHHHHhhh----hcCccCCCCHHHHH
Q 019861          233 DAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSR----LLRQNMMQ----ISGSYTFLSEREIE  304 (334)
Q Consensus       233 D~V~~~~vl~h~~d~~~~L~~i~r~LkpgG~lii~~~~~~~~~~~~~~~~----~~~~~~~~----~~~~~~~~t~~~l~  304 (334)
                      |+|++..+++|+.+|..+|+++.++|||||++++..++.+... ....+.    ........    .......++++++.
T Consensus       114 D~V~~~~vl~~~~~~~~~l~~~~~~LkpgG~l~i~~~n~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~  192 (255)
T PRK11036        114 DLILFHAVLEWVADPKSVLQTLWSVLRPGGALSLMFYNANGLL-MHNMVAGNFDYVQAGMPKRKKRTLSPDYPLDPEQVY  192 (255)
T ss_pred             CEEEehhHHHhhCCHHHHHHHHHHHcCCCeEEEEEEECccHHH-HHHHHccChHHHHhcCccccccCCCCCCCCCHHHHH
Confidence            9999999999999999999999999999999999888764210 000000    00000000    00112457899999


Q ss_pred             HHHHhCCCcEEEEeecCcEE
Q 019861          305 DLCRACGLVDFKCTRNRGFV  324 (334)
Q Consensus       305 ~ll~~~Gf~~v~~~~~g~~~  324 (334)
                      ++++++||+++.....+.+.
T Consensus       193 ~~l~~aGf~~~~~~gi~~~~  212 (255)
T PRK11036        193 QWLEEAGWQIMGKTGVRVFH  212 (255)
T ss_pred             HHHHHCCCeEeeeeeEEEEe
Confidence            99999999998755443343

>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional

Probab=99.78  E-value=7.3e-18  Score=155.24  Aligned_cols=149  Identities=21%  Similarity=0.323  Sum_probs=110.3

Q ss_pred             HHHHcccCCCCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHH--Hhc-C------------CCCCCCC
Q 019861          167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEF--VQQ-E------------SNFPKDS  231 (334)
Q Consensus       167 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~--~~~-~------------~~~~~~~  231 (334)
                      +.+...+.+..+.+|||||||+|.++..++..++ ..|+|+|+|+.++..++..  ... .            .++ +++
T Consensus       112 ~~l~~~l~~l~g~~VLDIGCG~G~~~~~la~~g~-~~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp~-~~~  189 (322)
T PRK15068        112 DRVLPHLSPLKGRTVLDVGCGNGYHMWRMLGAGA-KLVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLPA-LKA  189 (322)
T ss_pred             HHHHHhhCCCCCCEEEEeccCCcHHHHHHHHcCC-CEEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHCCC-cCC
Confidence            3555566666788999999999999999999875 3699999999988764432  211 1            133 678


Q ss_pred             ceEEEeCccccCCCCHHHHHHHHHHcccCCcEEEEEEeccCCCCCchHHHHHHHHHhhhhcCccCCCCHHHHHHHHHhCC
Q 019861          232 IDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLCRACG  311 (334)
Q Consensus       232 fD~V~~~~vl~h~~d~~~~L~~i~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~l~~ll~~~G  311 (334)
                      ||+|++..+++|+.+|..+|++++++|+|||.+++.+...++......+-   ...+......+...+.+++..+|+++|
T Consensus       190 FD~V~s~~vl~H~~dp~~~L~~l~~~LkpGG~lvl~~~~i~~~~~~~l~p---~~~y~~~~~~~~lps~~~l~~~L~~aG  266 (322)
T PRK15068        190 FDTVFSMGVLYHRRSPLDHLKQLKDQLVPGGELVLETLVIDGDENTVLVP---GDRYAKMRNVYFIPSVPALKNWLERAG  266 (322)
T ss_pred             cCEEEECChhhccCCHHHHHHHHHHhcCCCcEEEEEEEEecCCCccccCc---hhHHhcCccceeCCCHHHHHHHHHHcC
Confidence            99999999999999999999999999999999999877654332111100   011222223344569999999999999


Q ss_pred             CcEEEEeec
Q 019861          312 LVDFKCTRN  320 (334)
Q Consensus       312 f~~v~~~~~  320 (334)
                      |++++....
T Consensus       267 F~~i~~~~~  275 (322)
T PRK15068        267 FKDVRIVDV  275 (322)
T ss_pred             CceEEEEeC
Confidence            999886543

>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=99.78  E-value=2.1e-18  Score=152.79  Aligned_cols=150  Identities=21%  Similarity=0.335  Sum_probs=117.6

Q ss_pred             HHHHcccCCCCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHH---HHHhcCC------------CCCCCC
Q 019861          167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCY---EFVQQES------------NFPKDS  231 (334)
Q Consensus       167 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~---~~~~~~~------------~~~~~~  231 (334)
                      +.+...+....|++|||||||.|+++..++..|+ ..|+|+|++.....+..   +.+....            +. .+.
T Consensus       105 ~rl~p~l~~L~gk~VLDIGC~nGY~~frM~~~GA-~~ViGiDP~~lf~~QF~~i~~~lg~~~~~~~lplgvE~Lp~-~~~  182 (315)
T PF08003_consen  105 DRLLPHLPDLKGKRVLDIGCNNGYYSFRMLGRGA-KSVIGIDPSPLFYLQFEAIKHFLGQDPPVFELPLGVEDLPN-LGA  182 (315)
T ss_pred             HHHHhhhCCcCCCEEEEecCCCcHHHHHHhhcCC-CEEEEECCChHHHHHHHHHHHHhCCCccEEEcCcchhhccc-cCC
Confidence            4667777777899999999999999999999986 57999999987665432   3332211            22 578


Q ss_pred             ceEEEeCccccCCCCHHHHHHHHHHcccCCcEEEEEEeccCCCCCchHHHHHHHHHhhhhcCccCCCCHHHHHHHHHhCC
Q 019861          232 IDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLCRACG  311 (334)
Q Consensus       232 fD~V~~~~vl~h~~d~~~~L~~i~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~l~~ll~~~G  311 (334)
                      ||+|++..||.|..+|...|++++..|+|||.+++.+...++.....-.   -...+..+.+.+...|...+..+|+++|
T Consensus       183 FDtVF~MGVLYHrr~Pl~~L~~Lk~~L~~gGeLvLETlvi~g~~~~~L~---P~~rYa~m~nv~FiPs~~~L~~wl~r~g  259 (315)
T PF08003_consen  183 FDTVFSMGVLYHRRSPLDHLKQLKDSLRPGGELVLETLVIDGDENTVLV---PEDRYAKMRNVWFIPSVAALKNWLERAG  259 (315)
T ss_pred             cCEEEEeeehhccCCHHHHHHHHHHhhCCCCEEEEEEeeecCCCceEEc---cCCcccCCCceEEeCCHHHHHHHHHHcC
Confidence            9999999999999999999999999999999999999988765332211   1123445555667789999999999999


Q ss_pred             CcEEEEeecC
Q 019861          312 LVDFKCTRNR  321 (334)
Q Consensus       312 f~~v~~~~~g  321 (334)
                      |+.++.....
T Consensus       260 F~~v~~v~~~  269 (315)
T PF08003_consen  260 FKDVRCVDVS  269 (315)
T ss_pred             CceEEEecCc
Confidence            9999866543

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification

>PRK14103 trans-aconitate 2-methyltransferase; Provisional

Probab=99.77  E-value=8.9e-18  Score=150.35  Aligned_cols=148  Identities=18%  Similarity=0.121  Sum_probs=107.9

Q ss_pred             HHHcccCCCCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhc----C--CCCCCCCceEEEeCccc
Q 019861          168 LMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQ----E--SNFPKDSIDAVHAGAAI  241 (334)
Q Consensus       168 ~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~----~--~~~~~~~fD~V~~~~vl  241 (334)
                      .+...+...++.+|||||||+|.++..+++..+..+++|+|+|+.|++.+++....    +  ...++++||+|++..++
T Consensus        20 ~ll~~l~~~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~~~~~~~~~d~~~~~~~~~fD~v~~~~~l   99 (255)
T PRK14103         20 DLLARVGAERARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARERGVDARTGDVRDWKPKPDTDVVVSNAAL   99 (255)
T ss_pred             HHHHhCCCCCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHhcCCcEEEcChhhCCCCCCceEEEEehhh
Confidence            44555666678899999999999999999987667999999999999999864110    0  01346789999999999


Q ss_pred             cCCCCHHHHHHHHHHcccCCcEEEEEEeccCCCCCchHHHHHH-----HHH-hhhh--cCccCCCCHHHHHHHHHhCCCc
Q 019861          242 HCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLL-----RQN-MMQI--SGSYTFLSEREIEDLCRACGLV  313 (334)
Q Consensus       242 ~h~~d~~~~L~~i~r~LkpgG~lii~~~~~~~~~~~~~~~~~~-----~~~-~~~~--~~~~~~~t~~~l~~ll~~~Gf~  313 (334)
                      ||++++..++++++++|||||.+++..+..... .........     +.. ....  .....+.+.+++.++|+++||+
T Consensus       100 ~~~~d~~~~l~~~~~~LkpgG~l~~~~~~~~~~-~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~  178 (255)
T PRK14103        100 QWVPEHADLLVRWVDELAPGSWIAVQVPGNFDA-PSHAAVRALARREPWAKLLRDIPFRVGAVVQTPAGYAELLTDAGCK  178 (255)
T ss_pred             hhCCCHHHHHHHHHHhCCCCcEEEEEcCCCcCC-hhHHHHHHHhccCchhHHhcccccccCcCCCCHHHHHHHHHhCCCe
Confidence            999999999999999999999999986643111 111111111     111 1111  1123467999999999999997


Q ss_pred             EEE
Q 019861          314 DFK  316 (334)
Q Consensus       314 ~v~  316 (334)
                      +..
T Consensus       179 v~~  181 (255)
T PRK14103        179 VDA  181 (255)
T ss_pred             EEE
Confidence            543

>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed

Probab=99.76  E-value=8.4e-17  Score=142.27  Aligned_cols=164  Identities=23%  Similarity=0.299  Sum_probs=120.9

Q ss_pred             HHHcccCCCCCCcEEEECCCcCHHHHHHHHcCC-CCeEEEEeCCHHHHHHHHHHHhcC---------------CCCCCCC
Q 019861          168 LMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGL-FSLVVALDYSENMLKQCYEFVQQE---------------SNFPKDS  231 (334)
Q Consensus       168 ~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~-~~~v~giD~s~~~~~~a~~~~~~~---------------~~~~~~~  231 (334)
                      .+...+...++.+|||+|||+|.++..++..++ ..+++|+|+++.+++.+++++...               .++++++
T Consensus        42 ~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  121 (239)
T PRK00216         42 KTIKWLGVRPGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALPFPDNS  121 (239)
T ss_pred             HHHHHhCCCCCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccCCCCCCC
Confidence            334444444678999999999999999998875 579999999999999999876431               1234578


Q ss_pred             ceEEEeCccccCCCCHHHHHHHHHHcccCCcEEEEEEeccCCCCCchHHHHHHHHH----hhhh------------cCcc
Q 019861          232 IDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQN----MMQI------------SGSY  295 (334)
Q Consensus       232 fD~V~~~~vl~h~~d~~~~L~~i~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~----~~~~------------~~~~  295 (334)
                      ||+|++.++++|+.++..+|+++.++|+|||.+++.+...............+...    ....            ....
T Consensus       122 ~D~I~~~~~l~~~~~~~~~l~~~~~~L~~gG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  201 (239)
T PRK00216        122 FDAVTIAFGLRNVPDIDKALREMYRVLKPGGRLVILEFSKPTNPPLKKAYDFYLFKVLPLIGKLISKNAEAYSYLAESIR  201 (239)
T ss_pred             ccEEEEecccccCCCHHHHHHHHHHhccCCcEEEEEEecCCCchHHHHHHHHHHHhhhHHHHHHHcCCcHHHHHHHHHHH
Confidence            99999999999999999999999999999999998877654321111111100000    0000            0013


Q ss_pred             CCCCHHHHHHHHHhCCCcEEEEe--ecCcEEEEEEEcC
Q 019861          296 TFLSEREIEDLCRACGLVDFKCT--RNRGFVMFTATKP  331 (334)
Q Consensus       296 ~~~t~~~l~~ll~~~Gf~~v~~~--~~g~~~~~~a~K~  331 (334)
                      .+++.+++.++++++||++++..  ..|.+.++.+.||
T Consensus       202 ~~~~~~~~~~~l~~aGf~~~~~~~~~~~~~~~~~~~~~  239 (239)
T PRK00216        202 AFPDQEELAAMLEEAGFERVRYRNLTGGIVALHVGYKP  239 (239)
T ss_pred             hCCCHHHHHHHHHhCCCceeeeeeeecCcEEEEEEecC
Confidence            46789999999999999988854  4588999999986

>PRK10258 biotin biosynthesis protein BioC; Provisional

Probab=99.75  E-value=7.2e-17  Score=144.17  Aligned_cols=143  Identities=26%  Similarity=0.317  Sum_probs=112.1

Q ss_pred             HHHHHcccCCCCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhc---------CCCCCCCCceEEE
Q 019861          166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQ---------ESNFPKDSIDAVH  236 (334)
Q Consensus       166 ~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~---------~~~~~~~~fD~V~  236 (334)
                      .+.+.+.+...++.+|||+|||+|.++..++..+.  +++|+|+|+.+++.++++...         ..++++++||+|+
T Consensus        31 a~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~--~v~~~D~s~~~l~~a~~~~~~~~~~~~d~~~~~~~~~~fD~V~  108 (251)
T PRK10258         31 ADALLAMLPQRKFTHVLDAGCGPGWMSRYWRERGS--QVTALDLSPPMLAQARQKDAADHYLAGDIESLPLATATFDLAW  108 (251)
T ss_pred             HHHHHHhcCccCCCeEEEeeCCCCHHHHHHHHcCC--eEEEEECCHHHHHHHHhhCCCCCEEEcCcccCcCCCCcEEEEE
Confidence            34555666655678999999999999999988764  999999999999999987432         1256778999999


Q ss_pred             eCccccCCCCHHHHHHHHHHcccCCcEEEEEEeccCCCCCchHHHHHHHHHhhhhcCccCCCCHHHHHHHHHhCCCcE
Q 019861          237 AGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLCRACGLVD  314 (334)
Q Consensus       237 ~~~vl~h~~d~~~~L~~i~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~l~~ll~~~Gf~~  314 (334)
                      ++.++++..|+..+|.++.++|+|||.++++++.....    +.+...+...........+++.+++.+++...|+..
T Consensus       109 s~~~l~~~~d~~~~l~~~~~~Lk~gG~l~~~~~~~~~~----~el~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~  182 (251)
T PRK10258        109 SNLAVQWCGNLSTALRELYRVVRPGGVVAFTTLVQGSL----PELHQAWQAVDERPHANRFLPPDAIEQALNGWRYQH  182 (251)
T ss_pred             ECchhhhcCCHHHHHHHHHHHcCCCeEEEEEeCCCCch----HHHHHHHHHhccCCccccCCCHHHHHHHHHhCCcee
Confidence            99999999999999999999999999999998876432    222222222222233457889999999999988864

>PLN02336 phosphoethanolamine N-methyltransferase

Probab=99.75  E-value=8.3e-17  Score=156.66  Aligned_cols=146  Identities=19%  Similarity=0.237  Sum_probs=113.1

Q ss_pred             HHHHHcccCCCCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcC-------------CCCCCCCc
Q 019861          166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQE-------------SNFPKDSI  232 (334)
Q Consensus       166 ~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~-------------~~~~~~~f  232 (334)
                      .+.+.+.+...++.+|||||||+|..+..++... ..+++|+|+|+.+++.|+++....             .++++++|
T Consensus       255 te~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~-~~~v~gvDiS~~~l~~A~~~~~~~~~~v~~~~~d~~~~~~~~~~f  333 (475)
T PLN02336        255 TKEFVDKLDLKPGQKVLDVGCGIGGGDFYMAENF-DVHVVGIDLSVNMISFALERAIGRKCSVEFEVADCTKKTYPDNSF  333 (475)
T ss_pred             HHHHHHhcCCCCCCEEEEEeccCCHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHhhcCCCceEEEEcCcccCCCCCCCE
Confidence            4455555555667899999999999998888764 459999999999999998765321             14567889


Q ss_pred             eEEEeCccccCCCCHHHHHHHHHHcccCCcEEEEEEeccCCCCCchHHHHHHHHHhhhhcCccCCCCHHHHHHHHHhCCC
Q 019861          233 DAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLCRACGL  312 (334)
Q Consensus       233 D~V~~~~vl~h~~d~~~~L~~i~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~l~~ll~~~Gf  312 (334)
                      |+|++..+++|++|+..+|++++++|+|||.+++.++..........+    ...+..  .....++.+++.++++++||
T Consensus       334 D~I~s~~~l~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~----~~~~~~--~g~~~~~~~~~~~~l~~aGF  407 (475)
T PLN02336        334 DVIYSRDTILHIQDKPALFRSFFKWLKPGGKVLISDYCRSPGTPSPEF----AEYIKQ--RGYDLHDVQAYGQMLKDAGF  407 (475)
T ss_pred             EEEEECCcccccCCHHHHHHHHHHHcCCCeEEEEEEeccCCCCCcHHH----HHHHHh--cCCCCCCHHHHHHHHHHCCC
Confidence            999999999999999999999999999999999998876432222221    111111  13457799999999999999


Q ss_pred             cEEEEe
Q 019861          313 VDFKCT  318 (334)
Q Consensus       313 ~~v~~~  318 (334)
                      +++...
T Consensus       408 ~~i~~~  413 (475)
T PLN02336        408 DDVIAE  413 (475)
T ss_pred             eeeeee
Confidence            988654

>PLN02490 MPBQ/MSBQ methyltransferase

Probab=99.75  E-value=1.5e-16  Score=146.27  Aligned_cols=133  Identities=23%  Similarity=0.256  Sum_probs=103.8

Q ss_pred             CCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcC-----------CCCCCCCceEEEeCccccCCC
Q 019861          177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQE-----------SNFPKDSIDAVHAGAAIHCWS  245 (334)
Q Consensus       177 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~-----------~~~~~~~fD~V~~~~vl~h~~  245 (334)
                      ++.+|||||||+|.++..+++..+..+++++|+++.+++.++++....           .++++++||+|++..+++|++
T Consensus       113 ~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~~~~i~~i~gD~e~lp~~~~sFDvVIs~~~L~~~~  192 (340)
T PLN02490        113 RNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIIEGDAEDLPFPTDYADRYVSAGSIEYWP  192 (340)
T ss_pred             CCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhhccCCeEEeccHHhCCCCCCceeEEEEcChhhhCC
Confidence            467999999999999888887654569999999999999998865321           246678999999999999999


Q ss_pred             CHHHHHHHHHHcccCCcEEEEEEeccCCCCCchHHHHHHHHHhhhhcCccCCCCHHHHHHHHHhCCCcEEEEee
Q 019861          246 SPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLCRACGLVDFKCTR  319 (334)
Q Consensus       246 d~~~~L~~i~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~l~~ll~~~Gf~~v~~~~  319 (334)
                      ++..+|+++.++|+|||++++..+....     .+....   +..  ....+.+.+++.++++++||+.++...
T Consensus       193 d~~~~L~e~~rvLkPGG~LvIi~~~~p~-----~~~~r~---~~~--~~~~~~t~eEl~~lL~~aGF~~V~i~~  256 (340)
T PLN02490        193 DPQRGIKEAYRVLKIGGKACLIGPVHPT-----FWLSRF---FAD--VWMLFPKEEEYIEWFTKAGFKDVKLKR  256 (340)
T ss_pred             CHHHHHHHHHHhcCCCcEEEEEEecCcc-----hhHHHH---hhh--hhccCCCHHHHHHHHHHCCCeEEEEEE
Confidence            9999999999999999999887654321     111111   000  011246899999999999999888554

>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional

Probab=99.74  E-value=1.2e-17  Score=148.78  Aligned_cols=156  Identities=13%  Similarity=0.138  Sum_probs=113.1

Q ss_pred             CCCcEEEECCCcCHHHHHHHHc--CCCCeEEEEeCCHHHHHHHHHHHhcCC-------------CCCCCCceEEEeCccc
Q 019861          177 LGGNIIDASCGSGLFSRIFAKS--GLFSLVVALDYSENMLKQCYEFVQQES-------------NFPKDSIDAVHAGAAI  241 (334)
Q Consensus       177 ~~~~vLDiGcG~G~~~~~l~~~--~~~~~v~giD~s~~~~~~a~~~~~~~~-------------~~~~~~fD~V~~~~vl  241 (334)
                      ++.+|||||||+|..+..+++.  .+..+++|+|+|+.|++.|++++....             ..+...+|+|++..++
T Consensus        56 ~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~~~~~D~vv~~~~l  135 (247)
T PRK15451         56 PGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAIENASMVVLNFTL  135 (247)
T ss_pred             CCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCCCCCCCEEehhhHH
Confidence            4689999999999998888773  456799999999999999999875321             1233569999999999


Q ss_pred             cCCCCH--HHHHHHHHHcccCCcEEEEEEeccCCCCCchHHHHHHHHHhh---h------------hcCccCCCCHHHHH
Q 019861          242 HCWSSP--STGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMM---Q------------ISGSYTFLSEREIE  304 (334)
Q Consensus       242 ~h~~d~--~~~L~~i~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~---~------------~~~~~~~~t~~~l~  304 (334)
                      +|+++.  ..++++++++|+|||.+++.+..........+.....+..+.   +            ..+.....+.++..
T Consensus       136 ~~l~~~~~~~~l~~i~~~LkpGG~l~l~e~~~~~~~~~~~~~~~~~~~~~~~~g~s~~ei~~~~~~~~~~~~~~~~~~~~  215 (247)
T PRK15451        136 QFLEPSERQALLDKIYQGLNPGGALVLSEKFSFEDAKVGELLFNMHHDFKRANGYSELEISQKRSMLENVMLTDSVETHK  215 (247)
T ss_pred             HhCCHHHHHHHHHHHHHhcCCCCEEEEEEecCCCcchhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhhcccCCHHHHH
Confidence            999743  579999999999999999988665433223332222111111   0            11133457999999


Q ss_pred             HHHHhCCCcEEEEee-cCcEEEEEEEcCC
Q 019861          305 DLCRACGLVDFKCTR-NRGFVMFTATKPS  332 (334)
Q Consensus       305 ~ll~~~Gf~~v~~~~-~g~~~~~~a~K~~  332 (334)
                      ++|+++||+.++... ...+..+.+.|++
T Consensus       216 ~~L~~aGF~~v~~~~~~~~f~~~~a~k~~  244 (247)
T PRK15451        216 ARLHKAGFEHSELWFQCFNFGSLVALKAE  244 (247)
T ss_pred             HHHHHcCchhHHHHHHHHhHHHHhheecc
Confidence            999999998887543 3456667777754

>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]

Probab=99.73  E-value=1.3e-17  Score=143.67  Aligned_cols=137  Identities=22%  Similarity=0.285  Sum_probs=105.2

Q ss_pred             CCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCCC----------C-------CCCCceEEEeCcc
Q 019861          178 GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESN----------F-------PKDSIDAVHAGAA  240 (334)
Q Consensus       178 ~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~----------~-------~~~~fD~V~~~~v  240 (334)
                      |.+|||+|||+|.++..|++.|.  .|+|+|+++.+++.|++....+..          +       ..+.||+|+|..+
T Consensus        90 g~~ilDvGCGgGLLSepLArlga--~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~~~~fDaVvcsev  167 (282)
T KOG1270|consen   90 GMKILDVGCGGGLLSEPLARLGA--QVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGLTGKFDAVVCSEV  167 (282)
T ss_pred             CceEEEeccCccccchhhHhhCC--eeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhcccccceeeeHHH
Confidence            47899999999999999999986  999999999999999988332221          1       1356999999999


Q ss_pred             ccCCCCHHHHHHHHHHcccCCcEEEEEEeccCCCCCchH-HHHHHHHHhhhhcCc--cCCCCHHHHHHHHHhCCCcEEE
Q 019861          241 IHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIP-FSRLLRQNMMQISGS--YTFLSEREIEDLCRACGLVDFK  316 (334)
Q Consensus       241 l~h~~d~~~~L~~i~r~LkpgG~lii~~~~~~~~~~~~~-~~~~~~~~~~~~~~~--~~~~t~~~l~~ll~~~Gf~~v~  316 (334)
                      +||+.||..++..+.+.|||||.+++++.++........ ++...-..+.....|  ..+.+++++..+++..|+++..
T Consensus       168 leHV~dp~~~l~~l~~~lkP~G~lfittinrt~lS~~~~i~~~E~vl~ivp~Gth~~ekfi~p~e~~~~l~~~~~~v~~  246 (282)
T KOG1270|consen  168 LEHVKDPQEFLNCLSALLKPNGRLFITTINRTILSFAGTIFLAEIVLRIVPKGTHTWEKFINPEELTSILNANGAQVND  246 (282)
T ss_pred             HHHHhCHHHHHHHHHHHhCCCCceEeeehhhhHHHhhccccHHHHHHHhcCCCCcCHHHcCCHHHHHHHHHhcCcchhh
Confidence            999999999999999999999999999999853321111 111111111111112  3588999999999999998765

>TIGR00740 methyltransferase, putative

Probab=99.73  E-value=3.2e-17  Score=145.40  Aligned_cols=153  Identities=13%  Similarity=0.123  Sum_probs=110.1

Q ss_pred             CCCcEEEECCCcCHHHHHHHHcC--CCCeEEEEeCCHHHHHHHHHHHhcCC-------------CCCCCCceEEEeCccc
Q 019861          177 LGGNIIDASCGSGLFSRIFAKSG--LFSLVVALDYSENMLKQCYEFVQQES-------------NFPKDSIDAVHAGAAI  241 (334)
Q Consensus       177 ~~~~vLDiGcG~G~~~~~l~~~~--~~~~v~giD~s~~~~~~a~~~~~~~~-------------~~~~~~fD~V~~~~vl  241 (334)
                      ++.+|||+|||+|.++..+++..  +..+++|+|+|+.|++.|++++....             .++...+|+|++..++
T Consensus        53 ~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~d~v~~~~~l  132 (239)
T TIGR00740        53 PDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEIKNASMVILNFTL  132 (239)
T ss_pred             CCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCCCCCCEEeeecch
Confidence            46799999999999999998763  46799999999999999998765421             1233468999999999


Q ss_pred             cCCCC--HHHHHHHHHHcccCCcEEEEEEeccCCCCCchHHHHHHHHHhh---------------hhcCccCCCCHHHHH
Q 019861          242 HCWSS--PSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMM---------------QISGSYTFLSEREIE  304 (334)
Q Consensus       242 ~h~~d--~~~~L~~i~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~t~~~l~  304 (334)
                      +|+++  +..+|++++++|+|||.+++.++.........+.+...+..+.               ...++...++.+++.
T Consensus       133 ~~~~~~~~~~~l~~i~~~LkpgG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~~~~~  212 (239)
T TIGR00740       133 QFLPPEDRIALLTKIYEGLNPNGVLVLSEKFRFEDTKINHLLIDLHHQFKRANGYSELEISQKRTALENVMRTDSIETHK  212 (239)
T ss_pred             hhCCHHHHHHHHHHHHHhcCCCeEEEEeecccCCCHhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhccCCCCCHHHHH
Confidence            99974  4789999999999999999998765432222222222211111               112245678999999


Q ss_pred             HHHHhCCCcEEEEe-ecCcEEEEEEE
Q 019861          305 DLCRACGLVDFKCT-RNRGFVMFTAT  329 (334)
Q Consensus       305 ~ll~~~Gf~~v~~~-~~g~~~~~~a~  329 (334)
                      ++++++||+.++.. ..+.+..++++
T Consensus       213 ~~l~~aGF~~~~~~~~~~~~~~~~~~  238 (239)
T TIGR00740       213 ARLKNVGFSHVELWFQCFNFGSLVAV  238 (239)
T ss_pred             HHHHHcCCchHHHHHHHHhHhHHhee
Confidence            99999999877643 22334444444

A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.

>PRK08317 hypothetical protein; Provisional

Probab=99.72  E-value=3.3e-16  Score=138.33  Aligned_cols=151  Identities=28%  Similarity=0.305  Sum_probs=112.9

Q ss_pred             HHHHcccCCCCCCcEEEECCCcCHHHHHHHHcC-CCCeEEEEeCCHHHHHHHHHHHhcC-------------CCCCCCCc
Q 019861          167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSG-LFSLVVALDYSENMLKQCYEFVQQE-------------SNFPKDSI  232 (334)
Q Consensus       167 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~~v~giD~s~~~~~~a~~~~~~~-------------~~~~~~~f  232 (334)
                      +.+.+.+...++.+|||+|||+|.++..++... +..+++|+|+++.+++.++++....             .++++++|
T Consensus         9 ~~~~~~~~~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~   88 (241)
T PRK08317          9 ARTFELLAVQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGLGPNVEFVRGDADGLPFPDGSF   88 (241)
T ss_pred             HHHHHHcCCCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCCCCceEEEecccccCCCCCCCc
Confidence            445566666778899999999999999998875 5679999999999999998872211             13556899


Q ss_pred             eEEEeCccccCCCCHHHHHHHHHHcccCCcEEEEEEeccCCCC---CchHHHHHHHHHhhhhcCccCCCCHHHHHHHHHh
Q 019861          233 DAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPF---NLIPFSRLLRQNMMQISGSYTFLSEREIEDLCRA  309 (334)
Q Consensus       233 D~V~~~~vl~h~~d~~~~L~~i~r~LkpgG~lii~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~t~~~l~~ll~~  309 (334)
                      |+|++..+++|+.++..+++++.++|+|||.+++.++......   ............+..  .....++...+.+++++
T Consensus        89 D~v~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~  166 (241)
T PRK08317         89 DAVRSDRVLQHLEDPARALAEIARVLRPGGRVVVLDTDWDTLVWHSGDRALMRKILNFWSD--HFADPWLGRRLPGLFRE  166 (241)
T ss_pred             eEEEEechhhccCCHHHHHHHHHHHhcCCcEEEEEecCCCceeecCCChHHHHHHHHHHHh--cCCCCcHHHHHHHHHHH
Confidence            9999999999999999999999999999999999887543211   111122222222221  12345567899999999


Q ss_pred             CCCcEEEEee
Q 019861          310 CGLVDFKCTR  319 (334)
Q Consensus       310 ~Gf~~v~~~~  319 (334)
                      +||++++...
T Consensus       167 aGf~~~~~~~  176 (241)
T PRK08317        167 AGLTDIEVEP  176 (241)
T ss_pred             cCCCceeEEE
Confidence            9998876433

>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases

Probab=99.72  E-value=8e-16  Score=134.55  Aligned_cols=160  Identities=21%  Similarity=0.311  Sum_probs=115.9

Q ss_pred             cccCCCCCCcEEEECCCcCHHHHHHHHcCCC-CeEEEEeCCHHHHHHHHHHHhcC------------CCCCCCCceEEEe
Q 019861          171 GYLKPVLGGNIIDASCGSGLFSRIFAKSGLF-SLVVALDYSENMLKQCYEFVQQE------------SNFPKDSIDAVHA  237 (334)
Q Consensus       171 ~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~-~~v~giD~s~~~~~~a~~~~~~~------------~~~~~~~fD~V~~  237 (334)
                      ..+...++.+|||+|||+|.++..+++.++. .+++|+|+++.+++.++++....            .++++++||+|++
T Consensus        33 ~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~i~~  112 (223)
T TIGR01934        33 KLIGVFKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSELPLNIEFIQADAEALPFEDNSFDAVTI  112 (223)
T ss_pred             HHhccCCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhccCCCceEEecchhcCCCCCCcEEEEEE
Confidence            3344446789999999999999999988764 68999999999999998875411            1345678999999


Q ss_pred             CccccCCCCHHHHHHHHHHcccCCcEEEEEEeccCCCCCchHHHHHHHHHhh----h----h--------cCccCCCCHH
Q 019861          238 GAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMM----Q----I--------SGSYTFLSER  301 (334)
Q Consensus       238 ~~vl~h~~d~~~~L~~i~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~----~----~--------~~~~~~~t~~  301 (334)
                      ..+++|+.++..+++++.+.|+|||++++.+...............+...+.    .    .        .....+++.+
T Consensus       113 ~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  192 (223)
T TIGR01934       113 AFGLRNVTDIQKALREMYRVLKPGGRLVILEFSKPANALLKKFYKFYLKNVLPSIGGLISKNAEAYTYLPESIRAFPSQE  192 (223)
T ss_pred             eeeeCCcccHHHHHHHHHHHcCCCcEEEEEEecCCCchhhHHHHHHHHHHhhhhhhhhhcCCchhhHHHHHHHHhCCCHH
Confidence            9999999999999999999999999999987754332111111111111000    0    0        0113467899


Q ss_pred             HHHHHHHhCCCcEEE--EeecCcEEEEEEEc
Q 019861          302 EIEDLCRACGLVDFK--CTRNRGFVMFTATK  330 (334)
Q Consensus       302 ~l~~ll~~~Gf~~v~--~~~~g~~~~~~a~K  330 (334)
                      ++.++|+++||+++.  ....+...+++++|
T Consensus       193 ~~~~~l~~aGf~~~~~~~~~~~~~~~~~~~~  223 (223)
T TIGR01934       193 ELAAMLKEAGFEEVRYRSLTFGVAAIHVGKK  223 (223)
T ss_pred             HHHHHHHHcCCccceeeeeecceeeEEEecC
Confidence            999999999998766  44556566777665

Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.

>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed

Probab=99.71  E-value=1.1e-15  Score=138.24  Aligned_cols=140  Identities=21%  Similarity=0.272  Sum_probs=105.2

Q ss_pred             CCCCCCcEEEECCCcCHHHHHHHHc-CCCCeEEEEeCCHHHHHHHHHHHhcC--------------CCCCCCCceEEEeC
Q 019861          174 KPVLGGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQQE--------------SNFPKDSIDAVHAG  238 (334)
Q Consensus       174 ~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~~v~giD~s~~~~~~a~~~~~~~--------------~~~~~~~fD~V~~~  238 (334)
                      ...++.+|||+|||+|..+..++.. ++..+++|+|+++.+++.++++....              .++++++||+|++.
T Consensus        74 ~~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~~v~~~~~d~~~l~~~~~~fD~Vi~~  153 (272)
T PRK11873         74 ELKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYTNVEFRLGEIEALPVADNSVDVIISN  153 (272)
T ss_pred             cCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCCCEEEEEcchhhCCCCCCceeEEEEc
Confidence            3456889999999999887766654 55568999999999999999865421              14557799999999


Q ss_pred             ccccCCCCHHHHHHHHHHcccCCcEEEEEEeccCCCCCchHHHHHHHHHhhhhcCccCCCCHHHHHHHHHhCCCcEEEE
Q 019861          239 AAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLCRACGLVDFKC  317 (334)
Q Consensus       239 ~vl~h~~d~~~~L~~i~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~l~~ll~~~Gf~~v~~  317 (334)
                      .+++|++++..+++++.++|||||++++.+......  ...........+.  ......++.+++.++++++||..++.
T Consensus       154 ~v~~~~~d~~~~l~~~~r~LkpGG~l~i~~~~~~~~--~~~~~~~~~~~~~--~~~~~~~~~~e~~~~l~~aGf~~v~i  228 (272)
T PRK11873        154 CVINLSPDKERVFKEAFRVLKPGGRFAISDVVLRGE--LPEEIRNDAELYA--GCVAGALQEEEYLAMLAEAGFVDITI  228 (272)
T ss_pred             CcccCCCCHHHHHHHHHHHcCCCcEEEEEEeeccCC--CCHHHHHhHHHHh--ccccCCCCHHHHHHHHHHCCCCceEE
Confidence            999999999999999999999999999988765432  1111111111111  11234568899999999999988764

>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]

Probab=99.71  E-value=1.8e-16  Score=140.43  Aligned_cols=152  Identities=17%  Similarity=0.172  Sum_probs=119.8

Q ss_pred             HHHHHcccCCCCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCC------------CCCCCCce
Q 019861          166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES------------NFPKDSID  233 (334)
Q Consensus       166 ~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~------------~~~~~~fD  233 (334)
                      .+.+.+.++..+|.+|||||||.|.++..+++.+ +++|+|+++|+++.+.+++++...+            ....+.||
T Consensus        61 ~~~~~~kl~L~~G~~lLDiGCGWG~l~~~aA~~y-~v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~rd~~e~fD  139 (283)
T COG2230          61 LDLILEKLGLKPGMTLLDIGCGWGGLAIYAAEEY-GVTVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYRDFEEPFD  139 (283)
T ss_pred             HHHHHHhcCCCCCCEEEEeCCChhHHHHHHHHHc-CCEEEEeeCCHHHHHHHHHHHHHcCCCcccEEEeccccccccccc
Confidence            4677788888999999999999999999999997 5799999999999999999766443            12245599


Q ss_pred             EEEeCccccCCCC--HHHHHHHHHHcccCCcEEEEEEeccCCCCCchHHHHHHHHHhhhhcCccCCCCHHHHHHHHHhCC
Q 019861          234 AVHAGAAIHCWSS--PSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLCRACG  311 (334)
Q Consensus       234 ~V~~~~vl~h~~d--~~~~L~~i~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~l~~ll~~~G  311 (334)
                      -|++..++||+..  ...+++.++++|+|||.+++.+......... ....+...++.+   .....+...+.+..+++|
T Consensus       140 rIvSvgmfEhvg~~~~~~ff~~~~~~L~~~G~~llh~I~~~~~~~~-~~~~~i~~yiFP---gG~lPs~~~i~~~~~~~~  215 (283)
T COG2230         140 RIVSVGMFEHVGKENYDDFFKKVYALLKPGGRMLLHSITGPDQEFR-RFPDFIDKYIFP---GGELPSISEILELASEAG  215 (283)
T ss_pred             eeeehhhHHHhCcccHHHHHHHHHhhcCCCceEEEEEecCCCcccc-cchHHHHHhCCC---CCcCCCHHHHHHHHHhcC
Confidence            9999999999985  7899999999999999999988876543221 111222223222   445668899999999999


Q ss_pred             CcEEEEeecCc
Q 019861          312 LVDFKCTRNRG  322 (334)
Q Consensus       312 f~~v~~~~~g~  322 (334)
                      |.+.+....+.
T Consensus       216 ~~v~~~~~~~~  226 (283)
T COG2230         216 FVVLDVESLRP  226 (283)
T ss_pred             cEEehHhhhcH
Confidence            99988666554

>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=99.70  E-value=5.8e-17  Score=121.99  Aligned_cols=84  Identities=37%  Similarity=0.614  Sum_probs=73.3

Q ss_pred             EEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcC-----------CCCCCCCceEEEeCccccCCCCHHHH
Q 019861          182 IDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQE-----------SNFPKDSIDAVHAGAAIHCWSSPSTG  250 (334)
Q Consensus       182 LDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~-----------~~~~~~~fD~V~~~~vl~h~~d~~~~  250 (334)
                      ||+|||+|..+..+++. +..+++|+|+++.+++.++++....           .++++++||+|++..+++|++++..+
T Consensus         1 LdiG~G~G~~~~~l~~~-~~~~v~~~D~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~sfD~v~~~~~~~~~~~~~~~   79 (95)
T PF08241_consen    1 LDIGCGTGRFAAALAKR-GGASVTGIDISEEMLEQARKRLKNEGVSFRQGDAEDLPFPDNSFDVVFSNSVLHHLEDPEAA   79 (95)
T ss_dssp             EEET-TTSHHHHHHHHT-TTCEEEEEES-HHHHHHHHHHTTTSTEEEEESBTTSSSS-TT-EEEEEEESHGGGSSHHHHH
T ss_pred             CEecCcCCHHHHHHHhc-cCCEEEEEeCCHHHHHHHHhcccccCchheeehHHhCccccccccccccccceeeccCHHHH
Confidence            89999999999999999 3459999999999999999987643           26889999999999999999999999


Q ss_pred             HHHHHHcccCCcEEEE
Q 019861          251 VAEISRVLRPGGVFVG  266 (334)
Q Consensus       251 L~~i~r~LkpgG~lii  266 (334)
                      ++++.|+|||||++++
T Consensus        80 l~e~~rvLk~gG~l~~   95 (95)
T PF08241_consen   80 LREIYRVLKPGGRLVI   95 (95)
T ss_dssp             HHHHHHHEEEEEEEEE
T ss_pred             HHHHHHHcCcCeEEeC
Confidence            9999999999999986

The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....

>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4)

Probab=99.70  E-value=1.6e-16  Score=142.66  Aligned_cols=152  Identities=20%  Similarity=0.193  Sum_probs=105.1

Q ss_pred             HHHHHHcccCCCCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCC-------------CCCCCC
Q 019861          165 EFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES-------------NFPKDS  231 (334)
Q Consensus       165 ~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~-------------~~~~~~  231 (334)
                      ..+.+.+.+...+|.+|||||||.|.++..+++.+ .++|+|+.+|++..+.+++++...+             .+ +.+
T Consensus        50 k~~~~~~~~~l~~G~~vLDiGcGwG~~~~~~a~~~-g~~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~~-~~~  127 (273)
T PF02353_consen   50 KLDLLCEKLGLKPGDRVLDIGCGWGGLAIYAAERY-GCHVTGITLSEEQAEYARERIREAGLEDRVEVRLQDYRDL-PGK  127 (273)
T ss_dssp             HHHHHHTTTT--TT-EEEEES-TTSHHHHHHHHHH---EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG----S
T ss_pred             HHHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHc-CcEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeecccc-CCC
Confidence            34677788888899999999999999999999995 4699999999999999999877543             12 349


Q ss_pred             ceEEEeCccccCCC--CHHHHHHHHHHcccCCcEEEEEEeccCCCCCchHH---HHHHHHHhhhhcCccCCCCHHHHHHH
Q 019861          232 IDAVHAGAAIHCWS--SPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPF---SRLLRQNMMQISGSYTFLSEREIEDL  306 (334)
Q Consensus       232 fD~V~~~~vl~h~~--d~~~~L~~i~r~LkpgG~lii~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~t~~~l~~l  306 (334)
                      ||.|++..++||+.  +...+++++.++|+|||++++..............   ...+..++.   +.....+..++...
T Consensus       128 fD~IvSi~~~Ehvg~~~~~~~f~~~~~~LkpgG~~~lq~i~~~~~~~~~~~~~~~~~i~kyiF---Pgg~lps~~~~~~~  204 (273)
T PF02353_consen  128 FDRIVSIEMFEHVGRKNYPAFFRKISRLLKPGGRLVLQTITHRDPPYHAERRSSSDFIRKYIF---PGGYLPSLSEILRA  204 (273)
T ss_dssp             -SEEEEESEGGGTCGGGHHHHHHHHHHHSETTEEEEEEEEEE--HHHHHCTTCCCHHHHHHTS---TTS---BHHHHHHH
T ss_pred             CCEEEEEechhhcChhHHHHHHHHHHHhcCCCcEEEEEecccccccchhhcCCCceEEEEeeC---CCCCCCCHHHHHHH
Confidence            99999999999995  56799999999999999999887765321100000   011222222   23456688999999


Q ss_pred             HHhCCCcEEEEeecC
Q 019861          307 CRACGLVDFKCTRNR  321 (334)
Q Consensus       307 l~~~Gf~~v~~~~~g  321 (334)
                      +++.||++.+....+
T Consensus       205 ~~~~~l~v~~~~~~~  219 (273)
T PF02353_consen  205 AEDAGLEVEDVENLG  219 (273)
T ss_dssp             HHHTT-EEEEEEE-H
T ss_pred             HhcCCEEEEEEEEcC
Confidence            999999988876554

All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....

>PRK01683 trans-aconitate 2-methyltransferase; Provisional

Probab=99.69  E-value=5e-16  Score=139.29  Aligned_cols=147  Identities=14%  Similarity=0.116  Sum_probs=107.0

Q ss_pred             HHHHcccCCCCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCC--------CCCCCCceEEEeC
Q 019861          167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES--------NFPKDSIDAVHAG  238 (334)
Q Consensus       167 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~--------~~~~~~fD~V~~~  238 (334)
                      +.+...+...++.+|||||||+|.++..+++..+..+++|+|+|+.+++.++++.....        ..++++||+|+++
T Consensus        21 ~~ll~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~~~~~~~~~d~~~~~~~~~fD~v~~~  100 (258)
T PRK01683         21 RDLLARVPLENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRLPDCQFVEADIASWQPPQALDLIFAN  100 (258)
T ss_pred             HHHHhhCCCcCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhCCCCeEEECchhccCCCCCccEEEEc
Confidence            34555566667889999999999999999988766799999999999999998754211        1245689999999


Q ss_pred             ccccCCCCHHHHHHHHHHcccCCcEEEEEEeccCCCCCchHHHHH------HHHHhhhhc-CccCCCCHHHHHHHHHhCC
Q 019861          239 AAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRL------LRQNMMQIS-GSYTFLSEREIEDLCRACG  311 (334)
Q Consensus       239 ~vl~h~~d~~~~L~~i~r~LkpgG~lii~~~~~~~~~~~~~~~~~------~~~~~~~~~-~~~~~~t~~~l~~ll~~~G  311 (334)
                      .+++|++|+..+++++.++|+|||.+++..+....... ......      +...+.... ....+.+.+++.+++.++|
T Consensus       101 ~~l~~~~d~~~~l~~~~~~LkpgG~~~~~~~~~~~~~~-~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~~~g  179 (258)
T PRK01683        101 ASLQWLPDHLELFPRLVSLLAPGGVLAVQMPDNLDEPS-HVLMREVAENGPWEQNLPDRGARRAPLPPPHAYYDALAPAA  179 (258)
T ss_pred             cChhhCCCHHHHHHHHHHhcCCCcEEEEECCCCCCCHH-HHHHHHHHccCchHHHhccccccCcCCCCHHHHHHHHHhCC
Confidence            99999999999999999999999999997654211100 000110      011111100 1234568889999999999


Q ss_pred             CcE
Q 019861          312 LVD  314 (334)
Q Consensus       312 f~~  314 (334)
                      +.+
T Consensus       180 ~~v  182 (258)
T PRK01683        180 CRV  182 (258)
T ss_pred             Cce
Confidence            864

>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes

Probab=99.69  E-value=5.3e-16  Score=136.15  Aligned_cols=131  Identities=18%  Similarity=0.159  Sum_probs=103.8

Q ss_pred             CcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCC---------------CCCCCCceEEEeCccccC
Q 019861          179 GNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES---------------NFPKDSIDAVHAGAAIHC  243 (334)
Q Consensus       179 ~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~---------------~~~~~~fD~V~~~~vl~h  243 (334)
                      ++|||||||+|.++..+++.++..+++|+|+|+.+++.+++++...+               ++ .++||+|++..+++|
T Consensus         1 ~~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~~~-~~~fD~I~~~~~l~~   79 (224)
T smart00828        1 KRVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKDPF-PDTYDLVFGFEVIHH   79 (224)
T ss_pred             CeEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccCCC-CCCCCEeehHHHHHh
Confidence            37999999999999999988766799999999999999998764311               12 358999999999999


Q ss_pred             CCCHHHHHHHHHHcccCCcEEEEEEeccCCCCCchHHHHHHHHHhhhhcCccCCCCHHHHHHHHHhCCCcEEEEeecC
Q 019861          244 WSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLCRACGLVDFKCTRNR  321 (334)
Q Consensus       244 ~~d~~~~L~~i~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~l~~ll~~~Gf~~v~~~~~g  321 (334)
                      +.++..++++++++|+|||++++.++..+.....           ........+.+.++|.++++++||++++....+
T Consensus        80 ~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~-----------~~~~~~~~~~s~~~~~~~l~~~Gf~~~~~~~~~  146 (224)
T smart00828       80 IKDKMDLFSNISRHLKDGGHLVLADFIANLLSAI-----------EHEETTSYLVTREEWAELLARNNLRVVEGVDAS  146 (224)
T ss_pred             CCCHHHHHHHHHHHcCCCCEEEEEEcccccCccc-----------cccccccccCCHHHHHHHHHHCCCeEEEeEECc
Confidence            9999999999999999999999988754321000           000012236789999999999999998866544

>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins

Probab=99.68  E-value=1.7e-16  Score=132.21  Aligned_cols=146  Identities=17%  Similarity=0.264  Sum_probs=109.4

Q ss_pred             HHHHcccCCCCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHh---------cCCCCCCCCceEEEe
Q 019861          167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQ---------QESNFPKDSIDAVHA  237 (334)
Q Consensus       167 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~---------~~~~~~~~~fD~V~~  237 (334)
                      +.|.+++.+  +.+|||+|||.|.++..|.+.- .+..+|+|++++.+..+.++--         +...|++++||.|++
T Consensus         5 ~~I~~~I~p--gsrVLDLGCGdG~LL~~L~~~k-~v~g~GvEid~~~v~~cv~rGv~Viq~Dld~gL~~f~d~sFD~VIl   81 (193)
T PF07021_consen    5 QIIAEWIEP--GSRVLDLGCGDGELLAYLKDEK-QVDGYGVEIDPDNVAACVARGVSVIQGDLDEGLADFPDQSFDYVIL   81 (193)
T ss_pred             HHHHHHcCC--CCEEEecCCCchHHHHHHHHhc-CCeEEEEecCHHHHHHHHHcCCCEEECCHHHhHhhCCCCCccEEeh
Confidence            456666666  8999999999999999999863 5799999999999888876521         123589999999999


Q ss_pred             CccccCCCCHHHHHHHHHHcccCCcEEEEEEeccCCCCCchHHH--------HHHHHHhhhhcCccCCCCHHHHHHHHHh
Q 019861          238 GAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFS--------RLLRQNMMQISGSYTFLSEREIEDLCRA  309 (334)
Q Consensus       238 ~~vl~h~~d~~~~L~~i~r~LkpgG~lii~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~t~~~l~~ll~~  309 (334)
                      +.+|+++.+|..+|+++.|+   |...+++.||...+......+        ..+...+. .....+++|..++++++++
T Consensus        82 sqtLQ~~~~P~~vL~EmlRV---gr~~IVsFPNFg~W~~R~~l~~~GrmPvt~~lPy~WY-dTPNih~~Ti~DFe~lc~~  157 (193)
T PF07021_consen   82 SQTLQAVRRPDEVLEEMLRV---GRRAIVSFPNFGHWRNRLQLLLRGRMPVTKALPYEWY-DTPNIHLCTIKDFEDLCRE  157 (193)
T ss_pred             HhHHHhHhHHHHHHHHHHHh---cCeEEEEecChHHHHHHHHHHhcCCCCCCCCCCCccc-CCCCcccccHHHHHHHHHH
Confidence            99999999999999998665   678899999864221111110        00000000 1346678999999999999


Q ss_pred             CCCcEEEEee
Q 019861          310 CGLVDFKCTR  319 (334)
Q Consensus       310 ~Gf~~v~~~~  319 (334)
                      .|+++++...
T Consensus       158 ~~i~I~~~~~  167 (193)
T PF07021_consen  158 LGIRIEERVF  167 (193)
T ss_pred             CCCEEEEEEE
Confidence            9999988543

Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].

>TIGR02072 BioC biotin biosynthesis protein BioC

Probab=99.66  E-value=1.8e-15  Score=133.61  Aligned_cols=131  Identities=25%  Similarity=0.381  Sum_probs=105.0

Q ss_pred             CCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhc----------CCCCCCCCceEEEeCccccCCCC
Q 019861          177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQ----------ESNFPKDSIDAVHAGAAIHCWSS  246 (334)
Q Consensus       177 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~----------~~~~~~~~fD~V~~~~vl~h~~d  246 (334)
                      .+.+|||+|||+|.++..+++.++..+++|+|+++.+++.+++....          ..++++++||+|++.++++|+.+
T Consensus        34 ~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~vi~~~~l~~~~~  113 (240)
T TIGR02072        34 IPASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLSENVQFICGDAEKLPLEDSSFDLIVSNLALQWCDD  113 (240)
T ss_pred             CCCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcCCCCeEEecchhhCCCCCCceeEEEEhhhhhhccC
Confidence            35789999999999999999998877899999999999999887542          12456789999999999999999


Q ss_pred             HHHHHHHHHHcccCCcEEEEEEeccCCCCCchHHHHHHHHHhhhhcCccCCCCHHHHHHHHHhCCCcEEEE
Q 019861          247 PSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLCRACGLVDFKC  317 (334)
Q Consensus       247 ~~~~L~~i~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~l~~ll~~~Gf~~v~~  317 (334)
                      +..+|+++.++|+|||.+++.++.....   ..    .......  ....+++.+++.++++++ |+.+..
T Consensus       114 ~~~~l~~~~~~L~~~G~l~~~~~~~~~~---~~----~~~~~~~--~~~~~~~~~~~~~~l~~~-f~~~~~  174 (240)
T TIGR02072       114 LSQALSELARVLKPGGLLAFSTFGPGTL---HE----LRQSFGQ--HGLRYLSLDELKALLKNS-FELLTL  174 (240)
T ss_pred             HHHHHHHHHHHcCCCcEEEEEeCCccCH---HH----HHHHHHH--hccCCCCHHHHHHHHHHh-cCCcEE
Confidence            9999999999999999999998765431   11    1111111  245678999999999998 876553

This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.

>PRK06202 hypothetical protein; Provisional

Probab=99.65  E-value=2.1e-15  Score=133.15  Aligned_cols=144  Identities=15%  Similarity=0.081  Sum_probs=101.7

Q ss_pred             CCCCCCcEEEECCCcCHHHHHHHH----cCCCCeEEEEeCCHHHHHHHHHHHhcC-----------CCCCCCCceEEEeC
Q 019861          174 KPVLGGNIIDASCGSGLFSRIFAK----SGLFSLVVALDYSENMLKQCYEFVQQE-----------SNFPKDSIDAVHAG  238 (334)
Q Consensus       174 ~~~~~~~vLDiGcG~G~~~~~l~~----~~~~~~v~giD~s~~~~~~a~~~~~~~-----------~~~~~~~fD~V~~~  238 (334)
                      ...++.+|||+|||+|.++..+++    .++..+++|+|+++.+++.|+++....           .+.++++||+|+++
T Consensus        57 ~~~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~l~~~~~~fD~V~~~  136 (232)
T PRK06202         57 SADRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRPGVTFRQAVSDELVAEGERFDVVTSN  136 (232)
T ss_pred             CCCCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccCCCeEEEEecccccccCCCccEEEEC
Confidence            334567999999999998888765    355569999999999999998875321           13456899999999


Q ss_pred             ccccCCCCH--HHHHHHHHHcccCCcEEEEEEeccCCCCCchHHHHHHHHHh-------hhhcCccCCCCHHHHHHHHHh
Q 019861          239 AAIHCWSSP--STGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNM-------MQISGSYTFLSEREIEDLCRA  309 (334)
Q Consensus       239 ~vl~h~~d~--~~~L~~i~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~t~~~l~~ll~~  309 (334)
                      ++|||++++  ..+|+++.++++  |.+++.+........ ...........       .....+.++|+.+++.+++++
T Consensus       137 ~~lhh~~d~~~~~~l~~~~r~~~--~~~~i~dl~~~~~~~-~~~~~~~~~~~~~~~~~~d~~~s~~~~~~~~el~~ll~~  213 (232)
T PRK06202        137 HFLHHLDDAEVVRLLADSAALAR--RLVLHNDLIRSRLAY-ALFWAGTRLLSRSSFVHTDGLLSVRRSYTPAELAALAPQ  213 (232)
T ss_pred             CeeecCChHHHHHHHHHHHHhcC--eeEEEeccccCHHHH-HHHHHHHHHhccCceeeccchHHHHhhcCHHHHHHHhhC
Confidence            999999986  479999999998  666776666532100 00000011110       011224578999999999999


Q ss_pred             CCCcEEEEeecC
Q 019861          310 CGLVDFKCTRNR  321 (334)
Q Consensus       310 ~Gf~~v~~~~~g  321 (334)
                       ||++...+...
T Consensus       214 -Gf~~~~~~~~~  224 (232)
T PRK06202        214 -GWRVERQWPFR  224 (232)
T ss_pred             -CCeEEecccee
Confidence             99987755443

>PRK11207 tellurite resistance protein TehB; Provisional

Probab=99.65  E-value=4.5e-15  Score=127.63  Aligned_cols=130  Identities=20%  Similarity=0.220  Sum_probs=97.2

Q ss_pred             HHcccCCCCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCC--------------CCCCCCceE
Q 019861          169 MKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES--------------NFPKDSIDA  234 (334)
Q Consensus       169 l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~--------------~~~~~~fD~  234 (334)
                      +.+.+...++.+|||+|||+|.++..+++.+.  +|+|+|+|+.+++.++++.....              ++ +++||+
T Consensus        22 l~~~l~~~~~~~vLDiGcG~G~~a~~La~~g~--~V~gvD~S~~~i~~a~~~~~~~~~~~v~~~~~d~~~~~~-~~~fD~   98 (197)
T PRK11207         22 VLEAVKVVKPGKTLDLGCGNGRNSLYLAANGF--DVTAWDKNPMSIANLERIKAAENLDNLHTAVVDLNNLTF-DGEYDF   98 (197)
T ss_pred             HHHhcccCCCCcEEEECCCCCHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHHcCCCcceEEecChhhCCc-CCCcCE
Confidence            34444455678999999999999999999876  99999999999999987654321              12 457999


Q ss_pred             EEeCccccCCC--CHHHHHHHHHHcccCCcEEEEEEec-cCCCCCchHHHHHHHHHhhhhcCccCCCCHHHHHHHHHhCC
Q 019861          235 VHAGAAIHCWS--SPSTGVAEISRVLRPGGVFVGTTYI-VDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLCRACG  311 (334)
Q Consensus       235 V~~~~vl~h~~--d~~~~L~~i~r~LkpgG~lii~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~l~~ll~~~G  311 (334)
                      |++..+++|++  +...+++++.++|+|||++++.... .+....              ..+....++.+++.++++  |
T Consensus        99 I~~~~~~~~~~~~~~~~~l~~i~~~LkpgG~~~~~~~~~~~~~~~--------------~~~~~~~~~~~el~~~~~--~  162 (197)
T PRK11207         99 ILSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLIVAAMDTADYPC--------------TVGFPFAFKEGELRRYYE--G  162 (197)
T ss_pred             EEEecchhhCCHHHHHHHHHHHHHHcCCCcEEEEEEEecCCCCCC--------------CCCCCCccCHHHHHHHhC--C
Confidence            99999999886  4568999999999999996654433 221100              001124578999999997  8


Q ss_pred             CcEEEE
Q 019861          312 LVDFKC  317 (334)
Q Consensus       312 f~~v~~  317 (334)
                      |+++..
T Consensus       163 ~~~~~~  168 (197)
T PRK11207        163 WEMVKY  168 (197)
T ss_pred             CeEEEe
Confidence            988774

>TIGR00477 tehB tellurite resistance protein TehB

Probab=99.65  E-value=3.6e-15  Score=128.00  Aligned_cols=133  Identities=16%  Similarity=0.194  Sum_probs=97.8

Q ss_pred             HHHcccCCCCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCC-------------CCCCCCceE
Q 019861          168 LMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES-------------NFPKDSIDA  234 (334)
Q Consensus       168 ~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~-------------~~~~~~fD~  234 (334)
                      .+.+.+...++.+|||+|||+|.++..+++.+.  +|+|+|+|+.+++.++++.....             ++ +++||+
T Consensus        21 ~l~~~~~~~~~~~vLDiGcG~G~~a~~la~~g~--~V~~iD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~-~~~fD~   97 (195)
T TIGR00477        21 AVREAVKTVAPCKTLDLGCGQGRNSLYLSLAGY--DVRAWDHNPASIASVLDMKARENLPLRTDAYDINAAAL-NEDYDF   97 (195)
T ss_pred             HHHHHhccCCCCcEEEeCCCCCHHHHHHHHCCC--eEEEEECCHHHHHHHHHHHHHhCCCceeEeccchhccc-cCCCCE
Confidence            344455555578999999999999999999875  99999999999999887654211             12 357999


Q ss_pred             EEeCccccCCC--CHHHHHHHHHHcccCCcEEEEEEeccCCCCCchHHHHHHHHHhhhhcCccCCCCHHHHHHHHHhCCC
Q 019861          235 VHAGAAIHCWS--SPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLCRACGL  312 (334)
Q Consensus       235 V~~~~vl~h~~--d~~~~L~~i~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~l~~ll~~~Gf  312 (334)
                      |++..+++|+.  +...++++++++|+|||++++.+.........            . ......++++++.++++  +|
T Consensus        98 I~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lli~~~~~~~~~~~------------~-~~~~~~~~~~el~~~f~--~~  162 (195)
T TIGR00477        98 IFSTVVFMFLQAGRVPEIIANMQAHTRPGGYNLIVAAMDTADYPC------------H-MPFSFTFKEDELRQYYA--DW  162 (195)
T ss_pred             EEEecccccCCHHHHHHHHHHHHHHhCCCcEEEEEEecccCCCCC------------C-CCcCccCCHHHHHHHhC--CC
Confidence            99999999986  34689999999999999976655432211000            0 11224679999999996  58


Q ss_pred             cEEEEe
Q 019861          313 VDFKCT  318 (334)
Q Consensus       313 ~~v~~~  318 (334)
                      +++...
T Consensus       163 ~~~~~~  168 (195)
T TIGR00477       163 ELLKYN  168 (195)
T ss_pred             eEEEee
Confidence            777643

Part of a tellurite-reducing operon tehA and tehB

>KOG4300 consensus Predicted methyltransferase [General function prediction only]

Probab=99.64  E-value=2.7e-15  Score=124.65  Aligned_cols=155  Identities=17%  Similarity=0.229  Sum_probs=110.8

Q ss_pred             HHHcccCCCCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCC----------------CCCCCC
Q 019861          168 LMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES----------------NFPKDS  231 (334)
Q Consensus       168 ~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~----------------~~~~~~  231 (334)
                      .+..++.......|||||||+|..-.++... +...|+++|+++.|-+.+.+.+.+..                .+++++
T Consensus        67 ~i~~~~gk~~K~~vLEvgcGtG~Nfkfy~~~-p~~svt~lDpn~~mee~~~ks~~E~k~~~~~~fvva~ge~l~~l~d~s  145 (252)
T KOG4300|consen   67 GIYYFLGKSGKGDVLEVGCGTGANFKFYPWK-PINSVTCLDPNEKMEEIADKSAAEKKPLQVERFVVADGENLPQLADGS  145 (252)
T ss_pred             hhHHHhcccCccceEEecccCCCCcccccCC-CCceEEEeCCcHHHHHHHHHHHhhccCcceEEEEeechhcCcccccCC
Confidence            3344555544567899999999887766543 34699999999999999987765432                257899


Q ss_pred             ceEEEeCccccCCCCHHHHHHHHHHcccCCcEEEEEEeccCCCCCchHHHHHHHHHhhhh----cCccCCCCHHHHHHHH
Q 019861          232 IDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQI----SGSYTFLSEREIEDLC  307 (334)
Q Consensus       232 fD~V~~~~vl~h~~d~~~~L~~i~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~t~~~l~~ll  307 (334)
                      +|+|++..+|....||...|+++.|+|+|||++++.+......    .+..++++.....    ......++.+ ..+.|
T Consensus       146 ~DtVV~TlvLCSve~~~k~L~e~~rlLRpgG~iifiEHva~~y----~~~n~i~q~v~ep~~~~~~dGC~ltrd-~~e~L  220 (252)
T KOG4300|consen  146 YDTVVCTLVLCSVEDPVKQLNEVRRLLRPGGRIIFIEHVAGEY----GFWNRILQQVAEPLWHLESDGCVLTRD-TGELL  220 (252)
T ss_pred             eeeEEEEEEEeccCCHHHHHHHHHHhcCCCcEEEEEecccccc----hHHHHHHHHHhchhhheeccceEEehh-HHHHh
Confidence            9999999999999999999999999999999999999887543    2223333322221    1111234444 45778


Q ss_pred             HhCCCcEEEE--eecCcEEEEEE
Q 019861          308 RACGLVDFKC--TRNRGFVMFTA  328 (334)
Q Consensus       308 ~~~Gf~~v~~--~~~g~~~~~~a  328 (334)
                      +++-|...+.  ...|..+++++
T Consensus       221 eda~f~~~~~kr~~~~ttw~~V~  243 (252)
T KOG4300|consen  221 EDAEFSIDSCKRFNFGTTWVIVE  243 (252)
T ss_pred             hhcccccchhhcccCCceEEEEe
Confidence            8999988773  44565555444

>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A

Probab=99.64  E-value=1.2e-15  Score=125.83  Aligned_cols=132  Identities=19%  Similarity=0.328  Sum_probs=95.5

Q ss_pred             CCCcEEEECCCcCHHHHHHH-HcCCCCeEEEEeCCHHHHHHHHHHHhcCC------------CCC---CCCceEEEeCcc
Q 019861          177 LGGNIIDASCGSGLFSRIFA-KSGLFSLVVALDYSENMLKQCYEFVQQES------------NFP---KDSIDAVHAGAA  240 (334)
Q Consensus       177 ~~~~vLDiGcG~G~~~~~l~-~~~~~~~v~giD~s~~~~~~a~~~~~~~~------------~~~---~~~fD~V~~~~v  240 (334)
                      .+.+|||+|||+|.++..++ ..++..+++|+|+++.+++.|++++....            .++   .+.||+|++..+
T Consensus         3 ~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~ni~~~~~d~~~l~~~~~~~~D~I~~~~~   82 (152)
T PF13847_consen    3 SNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLDNIEFIQGDIEDLPQELEEKFDIIISNGV   82 (152)
T ss_dssp             TTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTSTTEEEEESBTTCGCGCSSTTEEEEEEEST
T ss_pred             CCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhcccccccccccceEEeehhccccccCCCeeEEEEcCc
Confidence            46799999999999999999 55667799999999999999999754321            122   168999999999


Q ss_pred             ccCCCCHHHHHHHHHHcccCCcEEEEEEeccCCCCCchHHHHHHHHHhhhhc-Ccc-CCCCHHHHHHHHHhCC
Q 019861          241 IHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQIS-GSY-TFLSEREIEDLCRACG  311 (334)
Q Consensus       241 l~h~~d~~~~L~~i~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~t~~~l~~ll~~~G  311 (334)
                      ++|+.++..+++++.+.|++||.+++.++....  .....+........... .+. .. +.+++..+++++|
T Consensus        83 l~~~~~~~~~l~~~~~~lk~~G~~i~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ag  152 (152)
T PF13847_consen   83 LHHFPDPEKVLKNIIRLLKPGGILIISDPNHND--ELPEQLEELMNLYSEVWSMIYIGN-DKEEWKYILEEAG  152 (152)
T ss_dssp             GGGTSHHHHHHHHHHHHEEEEEEEEEEEEEHSH--HHHHHHHHHHHHHHHHHHHCC----CCCGHHHHHHHTT
T ss_pred             hhhccCHHHHHHHHHHHcCCCcEEEEEECChHH--HHHHHHHHHHHHHHHHhhhhhccc-CHHHHHHHHHhcC
Confidence            999999999999999999999999999988211  00011111111001100 011 12 7889999999988

...

>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional

Probab=99.63  E-value=9.4e-15  Score=129.01  Aligned_cols=150  Identities=18%  Similarity=0.265  Sum_probs=109.3

Q ss_pred             HHHHcccCCCCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCC-----------C---CCCCCc
Q 019861          167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES-----------N---FPKDSI  232 (334)
Q Consensus       167 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~-----------~---~~~~~f  232 (334)
                      +.+...+...++.+|||||||+|.++..+.+.+.  +++++|+++.+++.++++.....           .   ..++.|
T Consensus        38 ~~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~--~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~f  115 (233)
T PRK05134         38 NYIREHAGGLFGKRVLDVGCGGGILSESMARLGA--DVTGIDASEENIEVARLHALESGLKIDYRQTTAEELAAEHPGQF  115 (233)
T ss_pred             HHHHHhccCCCCCeEEEeCCCCCHHHHHHHHcCC--eEEEEcCCHHHHHHHHHHHHHcCCceEEEecCHHHhhhhcCCCc
Confidence            3455555556688999999999999999988764  89999999999999987654221           1   235789


Q ss_pred             eEEEeCccccCCCCHHHHHHHHHHcccCCcEEEEEEeccCCCCCchHHH-HHH-HHHhhh-hcCccCCCCHHHHHHHHHh
Q 019861          233 DAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFS-RLL-RQNMMQ-ISGSYTFLSEREIEDLCRA  309 (334)
Q Consensus       233 D~V~~~~vl~h~~d~~~~L~~i~r~LkpgG~lii~~~~~~~~~~~~~~~-~~~-~~~~~~-~~~~~~~~t~~~l~~ll~~  309 (334)
                      |+|++.++++|+.++..+|+.+.+.|+|||.+++..+............ ... ...... ...+..+++.+++.+++++
T Consensus       116 D~Ii~~~~l~~~~~~~~~l~~~~~~L~~gG~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  195 (233)
T PRK05134        116 DVVTCMEMLEHVPDPASFVRACAKLVKPGGLVFFSTLNRNLKSYLLAIVGAEYVLRMLPKGTHDYKKFIKPSELAAWLRQ  195 (233)
T ss_pred             cEEEEhhHhhccCCHHHHHHHHHHHcCCCcEEEEEecCCChHHHHHHHhhHHHHhhhcCcccCchhhcCCHHHHHHHHHH
Confidence            9999999999999999999999999999999999877532110000000 000 000001 1123467899999999999


Q ss_pred             CCCcEEEEe
Q 019861          310 CGLVDFKCT  318 (334)
Q Consensus       310 ~Gf~~v~~~  318 (334)
                      +||++++..
T Consensus       196 ~Gf~~v~~~  204 (233)
T PRK05134        196 AGLEVQDIT  204 (233)
T ss_pred             CCCeEeeee
Confidence            999988753

>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=99.62  E-value=8.3e-17  Score=122.77  Aligned_cols=83  Identities=27%  Similarity=0.418  Sum_probs=61.1

Q ss_pred             EEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCC----------------CCCCCCceEEEeCccccCCC
Q 019861          182 IDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES----------------NFPKDSIDAVHAGAAIHCWS  245 (334)
Q Consensus       182 LDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~----------------~~~~~~fD~V~~~~vl~h~~  245 (334)
                      ||||||+|.++..+.+..+..+++|+|+|+.+++.+++++....                ....++||+|++..++||++
T Consensus         1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~vl~~l~   80 (99)
T PF08242_consen    1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELGNDNFERLRFDVLDLFDYDPPESFDLVVASNVLHHLE   80 (99)
T ss_dssp             -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE--SSS---CCC----SEEEEE-TTS--S
T ss_pred             CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeecCChhhcccccccceehhhhhHhhhh
Confidence            79999999999999999777899999999999987776655432                11125999999999999999


Q ss_pred             CHHHHHHHHHHcccCCcEE
Q 019861          246 SPSTGVAEISRVLRPGGVF  264 (334)
Q Consensus       246 d~~~~L~~i~r~LkpgG~l  264 (334)
                      ++..+|+.++++|+|||+|
T Consensus        81 ~~~~~l~~~~~~L~pgG~l   99 (99)
T PF08242_consen   81 DIEAVLRNIYRLLKPGGIL   99 (99)
T ss_dssp             -HHHHHHHHTTT-TSS-EE
T ss_pred             hHHHHHHHHHHHcCCCCCC
Confidence            9999999999999999986

The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.

>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU

Probab=99.61  E-value=3.7e-14  Score=130.37  Aligned_cols=148  Identities=16%  Similarity=0.129  Sum_probs=107.4

Q ss_pred             HHHHcccCCCCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCC----------C-C--CCCCce
Q 019861          167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES----------N-F--PKDSID  233 (334)
Q Consensus       167 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~----------~-~--~~~~fD  233 (334)
                      +.+.+.+...++.+|||||||+|.++..+++.+|..+++++|. +.+++.++++.....          . +  +-..+|
T Consensus       139 ~~l~~~~~~~~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~-~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~~~~~~D  217 (306)
T TIGR02716       139 QLLLEEAKLDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKESYPEAD  217 (306)
T ss_pred             HHHHHHcCCCCCCEEEEeCCchhHHHHHHHHHCCCCEEEEEec-HHHHHHHHHHHHhCCccceEEEEecCccCCCCCCCC
Confidence            4455555556678999999999999999999998889999997 789999887655321          1 1  123479


Q ss_pred             EEEeCccccCCCCH--HHHHHHHHHcccCCcEEEEEEeccCCCCCchHHHHHHHHHhhhh---cCccCCCCHHHHHHHHH
Q 019861          234 AVHAGAAIHCWSSP--STGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQI---SGSYTFLSEREIEDLCR  308 (334)
Q Consensus       234 ~V~~~~vl~h~~d~--~~~L~~i~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~t~~~l~~ll~  308 (334)
                      +|++.+++|++.+.  ..+|++++++|+|||++++.+...+...  .+....+.......   .....+.+.+++.++|+
T Consensus       218 ~v~~~~~lh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~ll~  295 (306)
T TIGR02716       218 AVLFCRILYSANEQLSTIMCKKAFDAMRSGGRLLILDMVIDDPE--NPNFDYLSHYILGAGMPFSVLGFKEQARYKEILE  295 (306)
T ss_pred             EEEeEhhhhcCChHHHHHHHHHHHHhcCCCCEEEEEEeccCCCC--CchhhHHHHHHHHcccccccccCCCHHHHHHHHH
Confidence            99999999999765  4799999999999999999988664322  22222222211110   11223456899999999


Q ss_pred             hCCCcEEEE
Q 019861          309 ACGLVDFKC  317 (334)
Q Consensus       309 ~~Gf~~v~~  317 (334)
                      ++||+.++.
T Consensus       296 ~aGf~~v~~  304 (306)
T TIGR02716       296 SLGYKDVTM  304 (306)
T ss_pred             HcCCCeeEe
Confidence            999998764

Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.

>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A

Probab=99.60  E-value=4.4e-15  Score=115.65  Aligned_cols=92  Identities=29%  Similarity=0.409  Sum_probs=75.8

Q ss_pred             CCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCC----------CC-----CCCCceEEEeCc-c
Q 019861          177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES----------NF-----PKDSIDAVHAGA-A  240 (334)
Q Consensus       177 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~----------~~-----~~~~fD~V~~~~-v  240 (334)
                      |+.+|||||||+|.++..+++..+..+++|+|+|+.+++.++++.....          .+     ..+.||+|++.. .
T Consensus         1 p~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~~   80 (112)
T PF12847_consen    1 PGGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDAEFDPDFLEPFDLVICSGFT   80 (112)
T ss_dssp             TTCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCCHGGTTTSSCEEEEEECSGS
T ss_pred             CCCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECccccCcccCCCCCEEEECCCc
Confidence            4789999999999999999996556799999999999999999883211          12     235799999999 5


Q ss_pred             ccCCC---CHHHHHHHHHHcccCCcEEEEEE
Q 019861          241 IHCWS---SPSTGVAEISRVLRPGGVFVGTT  268 (334)
Q Consensus       241 l~h~~---d~~~~L~~i~r~LkpgG~lii~~  268 (334)
                      ++++.   +...+|+++.+.|+|||++++.+
T Consensus        81 ~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~~  111 (112)
T PF12847_consen   81 LHFLLPLDERRRVLERIRRLLKPGGRLVINT  111 (112)
T ss_dssp             GGGCCHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             cccccchhHHHHHHHHHHHhcCCCcEEEEEE
Confidence            55443   45789999999999999999976

...

>PRK12335 tellurite resistance protein TehB; Provisional

Probab=99.59  E-value=3.2e-14  Score=129.50  Aligned_cols=124  Identities=18%  Similarity=0.197  Sum_probs=94.6

Q ss_pred             CCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCC------------CCCCCCceEEEeCccccCC
Q 019861          177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES------------NFPKDSIDAVHAGAAIHCW  244 (334)
Q Consensus       177 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~------------~~~~~~fD~V~~~~vl~h~  244 (334)
                      ++++|||+|||+|.++..++..+.  +|+|+|+|+.+++.++++.....            ...+++||+|++..+++|+
T Consensus       120 ~~~~vLDlGcG~G~~~~~la~~g~--~V~avD~s~~ai~~~~~~~~~~~l~v~~~~~D~~~~~~~~~fD~I~~~~vl~~l  197 (287)
T PRK12335        120 KPGKALDLGCGQGRNSLYLALLGF--DVTAVDINQQSLENLQEIAEKENLNIRTGLYDINSASIQEEYDFILSTVVLMFL  197 (287)
T ss_pred             CCCCEEEeCCCCCHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHHcCCceEEEEechhcccccCCccEEEEcchhhhC
Confidence            356999999999999999999875  99999999999999987755321            1125789999999999998


Q ss_pred             C--CHHHHHHHHHHcccCCcEEEEEEeccCCCCCchHHHHHHHHHhhhhcCccCCCCHHHHHHHHHhCCCcEEEE
Q 019861          245 S--SPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLCRACGLVDFKC  317 (334)
Q Consensus       245 ~--d~~~~L~~i~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~l~~ll~~~Gf~~v~~  317 (334)
                      .  +...+++++.++|+|||++++..+.......             ........++.+++.++++.  |++++.
T Consensus       198 ~~~~~~~~l~~~~~~LkpgG~~l~v~~~~~~~~~-------------~~~p~~~~~~~~el~~~~~~--~~i~~~  257 (287)
T PRK12335        198 NRERIPAIIKNMQEHTNPGGYNLIVCAMDTEDYP-------------CPMPFSFTFKEGELKDYYQD--WEIVKY  257 (287)
T ss_pred             CHHHHHHHHHHHHHhcCCCcEEEEEEecccccCC-------------CCCCCCcccCHHHHHHHhCC--CEEEEE
Confidence            6  4468999999999999997776554321100             00112356889999999964  888764

>PLN02585 magnesium protoporphyrin IX methyltransferase

Probab=99.59  E-value=4.1e-14  Score=129.33  Aligned_cols=149  Identities=15%  Similarity=0.174  Sum_probs=98.1

Q ss_pred             HHHHHHHHcccCC---CCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcC-------C-------
Q 019861          163 EKEFELMKGYLKP---VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQE-------S-------  225 (334)
Q Consensus       163 ~~~~~~l~~~l~~---~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~-------~-------  225 (334)
                      +...+.+.+++..   .++.+|||+|||+|.++..+++.+.  +|+|+|+|+.|++.++++....       .       
T Consensus       127 ~~~v~~~l~~l~~~~~~~~~~VLDlGcGtG~~a~~la~~g~--~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~  204 (315)
T PLN02585        127 AQTVEKVLLWLAEDGSLAGVTVCDAGCGTGSLAIPLALEGA--IVSASDISAAMVAEAERRAKEALAALPPEVLPKFEAN  204 (315)
T ss_pred             HHHHHHHHHHHHhcCCCCCCEEEEecCCCCHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcccccccccceEEEEc
Confidence            3334444445432   3578999999999999999999875  9999999999999999886532       0       


Q ss_pred             C--CCCCCceEEEeCccccCCCCHH--HHHHHHHHcccCCcEEEEEEeccCCCCCchHHHHHHHHHhhhhcCc--cCCCC
Q 019861          226 N--FPKDSIDAVHAGAAIHCWSSPS--TGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGS--YTFLS  299 (334)
Q Consensus       226 ~--~~~~~fD~V~~~~vl~h~~d~~--~~L~~i~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~t  299 (334)
                      .  ..+++||+|++..+++|+++..  .+++.+.+ +.+||.++...+..    .....+......+.....+  ..+++
T Consensus       205 Dl~~l~~~fD~Vv~~~vL~H~p~~~~~~ll~~l~~-l~~g~liIs~~p~~----~~~~~l~~~g~~~~g~~~~~r~y~~s  279 (315)
T PLN02585        205 DLESLSGKYDTVTCLDVLIHYPQDKADGMIAHLAS-LAEKRLIISFAPKT----LYYDILKRIGELFPGPSKATRAYLHA  279 (315)
T ss_pred             chhhcCCCcCEEEEcCEEEecCHHHHHHHHHHHHh-hcCCEEEEEeCCcc----hHHHHHHHHHhhcCCCCcCceeeeCC
Confidence            1  1257899999999999998653  45666664 45555544322221    1111122222222221111  23458


Q ss_pred             HHHHHHHHHhCCCcEEEEe
Q 019861          300 EREIEDLCRACGLVDFKCT  318 (334)
Q Consensus       300 ~~~l~~ll~~~Gf~~v~~~  318 (334)
                      .++++++++++||++....
T Consensus       280 ~eel~~lL~~AGf~v~~~~  298 (315)
T PLN02585        280 EADVERALKKAGWKVARRE  298 (315)
T ss_pred             HHHHHHHHHHCCCEEEEEE
Confidence            9999999999999987743

>TIGR02081 metW methionine biosynthesis protein MetW

Probab=99.59  E-value=1.8e-14  Score=123.70  Aligned_cols=146  Identities=15%  Similarity=0.152  Sum_probs=99.1

Q ss_pred             HHHcccCCCCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHH--------hcC-CCCCCCCceEEEeC
Q 019861          168 LMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFV--------QQE-SNFPKDSIDAVHAG  238 (334)
Q Consensus       168 ~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~--------~~~-~~~~~~~fD~V~~~  238 (334)
                      .+.+.++  ++.+|||+|||+|.++..+++.. ...++|+|+++.+++.+++.-        ... .++++++||+|++.
T Consensus         6 ~i~~~i~--~~~~iLDiGcG~G~~~~~l~~~~-~~~~~giD~s~~~i~~a~~~~~~~~~~d~~~~l~~~~~~sfD~Vi~~   82 (194)
T TIGR02081         6 SILNLIP--PGSRVLDLGCGDGELLALLRDEK-QVRGYGIEIDQDGVLACVARGVNVIQGDLDEGLEAFPDKSFDYVILS   82 (194)
T ss_pred             HHHHhcC--CCCEEEEeCCCCCHHHHHHHhcc-CCcEEEEeCCHHHHHHHHHcCCeEEEEEhhhcccccCCCCcCEEEEh
Confidence            4444544  36799999999999999887664 347899999999999887531        111 13567899999999


Q ss_pred             ccccCCCCHHHHHHHHHHcccCCcEEEEEEeccCCCCCchHHHHH-HHHHh------hhhcCccCCCCHHHHHHHHHhCC
Q 019861          239 AAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRL-LRQNM------MQISGSYTFLSEREIEDLCRACG  311 (334)
Q Consensus       239 ~vl~h~~d~~~~L~~i~r~LkpgG~lii~~~~~~~~~~~~~~~~~-~~~~~------~~~~~~~~~~t~~~l~~ll~~~G  311 (334)
                      ++++|+.|+..+|+++.+.++   .+++..++............. .....      .....+.++++.+++.++++++|
T Consensus        83 ~~l~~~~d~~~~l~e~~r~~~---~~ii~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ll~~~G  159 (194)
T TIGR02081        83 QTLQATRNPEEILDEMLRVGR---HAIVSFPNFGYWRVRWSILTKGRMPVTGELPYDWYNTPNIHFCTIADFEDLCGELN  159 (194)
T ss_pred             hHhHcCcCHHHHHHHHHHhCC---eEEEEcCChhHHHHHHHHHhCCccccCCCCCccccCCCCcccCcHHHHHHHHHHCC
Confidence            999999999999999888765   455655553211000000000 00000      00112456899999999999999


Q ss_pred             CcEEEEee
Q 019861          312 LVDFKCTR  319 (334)
Q Consensus       312 f~~v~~~~  319 (334)
                      |++++...
T Consensus       160 f~v~~~~~  167 (194)
T TIGR02081       160 LRILDRAA  167 (194)
T ss_pred             CEEEEEEE
Confidence            99988543

This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.

>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase

Probab=99.58  E-value=9.7e-14  Score=121.70  Aligned_cols=137  Identities=19%  Similarity=0.300  Sum_probs=103.3

Q ss_pred             CCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCC--------------CCC-CCCceEEEeCccc
Q 019861          177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES--------------NFP-KDSIDAVHAGAAI  241 (334)
Q Consensus       177 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~--------------~~~-~~~fD~V~~~~vl  241 (334)
                      .+.+|||+|||+|.++..+++.+.  .++|+|+++.+++.++++.....              +.. .++||+|++.+++
T Consensus        45 ~~~~vLdlG~G~G~~~~~l~~~~~--~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~i~~~~~l  122 (224)
T TIGR01983        45 FGLRVLDVGCGGGLLSEPLARLGA--NVTGIDASEENIEVAKLHAKKDPLLKIEYRCTSVEDLAEKGAKSFDVVTCMEVL  122 (224)
T ss_pred             CCCeEEEECCCCCHHHHHHHhcCC--eEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhcCCCCCccEEEehhHH
Confidence            467999999999999999988765  79999999999999988654321              111 3689999999999


Q ss_pred             cCCCCHHHHHHHHHHcccCCcEEEEEEeccCCCCCchHHHHHHHH-Hh---h-h-hcCccCCCCHHHHHHHHHhCCCcEE
Q 019861          242 HCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQ-NM---M-Q-ISGSYTFLSEREIEDLCRACGLVDF  315 (334)
Q Consensus       242 ~h~~d~~~~L~~i~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~-~~---~-~-~~~~~~~~t~~~l~~ll~~~Gf~~v  315 (334)
                      +|+.++..+|+++.++|+|||.+++.+++....   ..+...... ..   . . ......+++.+++.++++++||+++
T Consensus       123 ~~~~~~~~~l~~~~~~L~~gG~l~i~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~G~~i~  199 (224)
T TIGR01983       123 EHVPDPQAFIRACAQLLKPGGILFFSTINRTPK---SYLLAIVGAEYILRIVPKGTHDWEKFIKPSELTSWLESAGLRVK  199 (224)
T ss_pred             HhCCCHHHHHHHHHHhcCCCcEEEEEecCCCch---HHHHHHHhhhhhhhcCCCCcCChhhcCCHHHHHHHHHHcCCeee
Confidence            999999999999999999999999988764321   111110000 01   0 0 0112357799999999999999998


Q ss_pred             EEe
Q 019861          316 KCT  318 (334)
Q Consensus       316 ~~~  318 (334)
                      +..
T Consensus       200 ~~~  202 (224)
T TIGR01983       200 DVK  202 (224)
T ss_pred             eee
Confidence            754

This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.

>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase

Probab=99.57  E-value=4.9e-14  Score=123.28  Aligned_cols=145  Identities=19%  Similarity=0.272  Sum_probs=101.3

Q ss_pred             HHHHcccC--CCCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCC----------C--CCCCCc
Q 019861          167 ELMKGYLK--PVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES----------N--FPKDSI  232 (334)
Q Consensus       167 ~~l~~~l~--~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~----------~--~~~~~f  232 (334)
                      +.+.+++.  ..++.+|||+|||+|.++..++..+.  +++|+|+++.+++.|++++....          .  ...++|
T Consensus        43 ~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~~~--~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~f  120 (219)
T TIGR02021        43 RKLLDWLPKDPLKGKRVLDAGCGTGLLSIELAKRGA--IVKAVDISEQMVQMARNRAQGRDVAGNVEFEVNDLLSLCGEF  120 (219)
T ss_pred             HHHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChhhCCCCc
Confidence            34444444  34578999999999999999998765  99999999999999998765321          0  112789


Q ss_pred             eEEEeCccccCCCC--HHHHHHHHHHcccCCcEEEEEEeccCCCCCchHHHHHHHHHhhh--hcCccCCCCHHHHHHHHH
Q 019861          233 DAVHAGAAIHCWSS--PSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQ--ISGSYTFLSEREIEDLCR  308 (334)
Q Consensus       233 D~V~~~~vl~h~~d--~~~~L~~i~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~t~~~l~~ll~  308 (334)
                      |+|++..+++|++.  ...+++++.+++++++.+.+....     ........+...+..  ...+..+++.+++.++++
T Consensus       121 D~ii~~~~l~~~~~~~~~~~l~~i~~~~~~~~~i~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  195 (219)
T TIGR02021       121 DIVVCMDVLIHYPASDMAKALGHLASLTKERVIFTFAPKT-----AWLAFLKMIGELFPGSSRATSAYLHPMTDLERALG  195 (219)
T ss_pred             CEEEEhhHHHhCCHHHHHHHHHHHHHHhCCCEEEEECCCc-----hHHHHHHHHHhhCcCcccccceEEecHHHHHHHHH
Confidence            99999999999864  467899999998876555442111     111111111111111  122456789999999999


Q ss_pred             hCCCcEEEEe
Q 019861          309 ACGLVDFKCT  318 (334)
Q Consensus       309 ~~Gf~~v~~~  318 (334)
                      ++||+++...
T Consensus       196 ~~Gf~v~~~~  205 (219)
T TIGR02021       196 ELGWKIVREG  205 (219)
T ss_pred             HcCceeeeee
Confidence            9999998754

This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.

>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated

Probab=99.56  E-value=2.4e-13  Score=115.98  Aligned_cols=121  Identities=20%  Similarity=0.129  Sum_probs=93.5

Q ss_pred             HHHHcccCCCCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCC------------CCCCCCceE
Q 019861          167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES------------NFPKDSIDA  234 (334)
Q Consensus       167 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~------------~~~~~~fD~  234 (334)
                      ..+...+...++.+|||+|||+|.++..++..++..+++++|+++.+++.++++.....            ....++||+
T Consensus        21 ~~~~~~l~~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~~~~i~~~~~d~~~~~~~~~D~  100 (187)
T PRK08287         21 ALALSKLELHRAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFGCGNIDIIPGEAPIELPGKADA  100 (187)
T ss_pred             HHHHHhcCCCCCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCCeEEEecCchhhcCcCCCE
Confidence            44455666667889999999999999999988777799999999999999988654321            011357999


Q ss_pred             EEeCccccCCCCHHHHHHHHHHcccCCcEEEEEEeccCCCCCchHHHHHHHHHhhhhcCccCCCCHHHHHHHHHhCCCcE
Q 019861          235 VHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLCRACGLVD  314 (334)
Q Consensus       235 V~~~~vl~h~~d~~~~L~~i~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~l~~ll~~~Gf~~  314 (334)
                      |++....++   ...+++.+.+.|+|||++++.....                          -+.+++.+++++.||+.
T Consensus       101 v~~~~~~~~---~~~~l~~~~~~Lk~gG~lv~~~~~~--------------------------~~~~~~~~~l~~~g~~~  151 (187)
T PRK08287        101 IFIGGSGGN---LTAIIDWSLAHLHPGGRLVLTFILL--------------------------ENLHSALAHLEKCGVSE  151 (187)
T ss_pred             EEECCCccC---HHHHHHHHHHhcCCCeEEEEEEecH--------------------------hhHHHHHHHHHHCCCCc
Confidence            999876543   4668999999999999998865432                          13567788999999976


Q ss_pred             EE
Q 019861          315 FK  316 (334)
Q Consensus       315 v~  316 (334)
                      ++
T Consensus       152 ~~  153 (187)
T PRK08287        152 LD  153 (187)
T ss_pred             ce
Confidence            55

>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed

Probab=99.55  E-value=6.5e-13  Score=112.78  Aligned_cols=109  Identities=23%  Similarity=0.202  Sum_probs=88.3

Q ss_pred             CCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCC--------------CCCCCCceEEEeCccccC
Q 019861          178 GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES--------------NFPKDSIDAVHAGAAIHC  243 (334)
Q Consensus       178 ~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~--------------~~~~~~fD~V~~~~vl~h  243 (334)
                      +.+|||+|||+|..+..++...+..+|+|+|+++.+++.++++.....              +. +++||+|++..    
T Consensus        46 g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~l~~i~~~~~d~~~~~~-~~~fDlV~~~~----  120 (187)
T PRK00107         46 GERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELGLKNVTVVHGRAEEFGQ-EEKFDVVTSRA----  120 (187)
T ss_pred             CCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcCCCCEEEEeccHhhCCC-CCCccEEEEcc----
Confidence            789999999999999999887667799999999999999998765432              12 56899999975    


Q ss_pred             CCCHHHHHHHHHHcccCCcEEEEEEeccCCCCCchHHHHHHHHHhhhhcCccCCCCHHHHHHHHHhCCCcEEEEe
Q 019861          244 WSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLCRACGLVDFKCT  318 (334)
Q Consensus       244 ~~d~~~~L~~i~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~l~~ll~~~Gf~~v~~~  318 (334)
                      +.++..+++++++.|+|||++++.....                           ...++.++.+..|+.+.+.+
T Consensus       121 ~~~~~~~l~~~~~~LkpGG~lv~~~~~~---------------------------~~~~l~~~~~~~~~~~~~~~  168 (187)
T PRK00107        121 VASLSDLVELCLPLLKPGGRFLALKGRD---------------------------PEEEIAELPKALGGKVEEVI  168 (187)
T ss_pred             ccCHHHHHHHHHHhcCCCeEEEEEeCCC---------------------------hHHHHHHHHHhcCceEeeeE
Confidence            4578889999999999999999875431                           24467888888899866633

>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional

Probab=99.54  E-value=6.1e-14  Score=132.10  Aligned_cols=149  Identities=19%  Similarity=0.173  Sum_probs=107.9

Q ss_pred             HHHHHcccCCCCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCC------CC--CCCCceEEEe
Q 019861          166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES------NF--PKDSIDAVHA  237 (334)
Q Consensus       166 ~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~------~~--~~~~fD~V~~  237 (334)
                      .+.+.+.+...++.+|||||||+|.++..+++.. ..+|+|+|+|+.+++.++++.....      .+  .+++||+|++
T Consensus       156 ~~~l~~~l~l~~g~rVLDIGcG~G~~a~~la~~~-g~~V~giDlS~~~l~~A~~~~~~l~v~~~~~D~~~l~~~fD~Ivs  234 (383)
T PRK11705        156 LDLICRKLQLKPGMRVLDIGCGWGGLARYAAEHY-GVSVVGVTISAEQQKLAQERCAGLPVEIRLQDYRDLNGQFDRIVS  234 (383)
T ss_pred             HHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHhccCeEEEEECchhhcCCCCCEEEE
Confidence            3455666677778999999999999999998764 3599999999999999998764321      11  1478999999


Q ss_pred             CccccCCCC--HHHHHHHHHHcccCCcEEEEEEeccCCCC-CchHHHHHHHHHhhhhcCccCCCCHHHHHHHHHhCCCcE
Q 019861          238 GAAIHCWSS--PSTGVAEISRVLRPGGVFVGTTYIVDGPF-NLIPFSRLLRQNMMQISGSYTFLSEREIEDLCRACGLVD  314 (334)
Q Consensus       238 ~~vl~h~~d--~~~~L~~i~r~LkpgG~lii~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~t~~~l~~ll~~~Gf~~  314 (334)
                      ..+++|+.+  +..+++++.++|||||.+++.+...+... ....++.   .++  ++ .....+.+++.+.++ .||.+
T Consensus       235 ~~~~ehvg~~~~~~~l~~i~r~LkpGG~lvl~~i~~~~~~~~~~~~i~---~yi--fp-~g~lps~~~i~~~~~-~~~~v  307 (383)
T PRK11705        235 VGMFEHVGPKNYRTYFEVVRRCLKPDGLFLLHTIGSNKTDTNVDPWIN---KYI--FP-NGCLPSVRQIAQASE-GLFVM  307 (383)
T ss_pred             eCchhhCChHHHHHHHHHHHHHcCCCcEEEEEEccCCCCCCCCCCCce---eee--cC-CCcCCCHHHHHHHHH-CCcEE
Confidence            999999964  57899999999999999999877654221 1112211   111  11 223557888888766 58988


Q ss_pred             EEEeecCc
Q 019861          315 FKCTRNRG  322 (334)
Q Consensus       315 v~~~~~g~  322 (334)
                      .+....+.
T Consensus       308 ~d~~~~~~  315 (383)
T PRK11705        308 EDWHNFGA  315 (383)
T ss_pred             EEEecChh
Confidence            77665543

>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed

Probab=99.54  E-value=2.3e-13  Score=121.35  Aligned_cols=125  Identities=20%  Similarity=0.344  Sum_probs=99.8

Q ss_pred             CCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCCC-----CCCC--CceEEEeCccccCCCCHHH
Q 019861          177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESN-----FPKD--SIDAVHAGAAIHCWSSPST  249 (334)
Q Consensus       177 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~-----~~~~--~fD~V~~~~vl~h~~d~~~  249 (334)
                      ++.+|||+|||+|.++..+++.+. .+++|+|+++.+++.|+++.....-     +..+  +||+|+++...+.   ...
T Consensus       119 ~~~~VLDiGcGsG~l~i~~~~~g~-~~v~giDis~~~l~~A~~n~~~~~~~~~~~~~~~~~~fD~Vvani~~~~---~~~  194 (250)
T PRK00517        119 PGKTVLDVGCGSGILAIAAAKLGA-KKVLAVDIDPQAVEAARENAELNGVELNVYLPQGDLKADVIVANILANP---LLE  194 (250)
T ss_pred             CCCEEEEeCCcHHHHHHHHHHcCC-CeEEEEECCHHHHHHHHHHHHHcCCCceEEEccCCCCcCEEEEcCcHHH---HHH
Confidence            478999999999999988888775 3699999999999999988764331     2222  7999998754322   346


Q ss_pred             HHHHHHHcccCCcEEEEEEeccCCCCCchHHHHHHHHHhhhhcCccCCCCHHHHHHHHHhCCCcEEEEeecCcEEEEEEE
Q 019861          250 GVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLCRACGLVDFKCTRNRGFVMFTAT  329 (334)
Q Consensus       250 ~L~~i~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~l~~ll~~~Gf~~v~~~~~g~~~~~~a~  329 (334)
                      ++.++.++|+|||+++++.....                          ..+++.+.+++.||++++....+.|..++++
T Consensus       195 l~~~~~~~LkpgG~lilsgi~~~--------------------------~~~~v~~~l~~~Gf~~~~~~~~~~W~~~~~~  248 (250)
T PRK00517        195 LAPDLARLLKPGGRLILSGILEE--------------------------QADEVLEAYEEAGFTLDEVLERGEWVALVGK  248 (250)
T ss_pred             HHHHHHHhcCCCcEEEEEECcHh--------------------------hHHHHHHHHHHCCCEEEEEEEeCCEEEEEEE
Confidence            78999999999999999755321                          3567889999999999998888889888888


Q ss_pred             cC
Q 019861          330 KP  331 (334)
Q Consensus       330 K~  331 (334)
                      |+
T Consensus       249 ~~  250 (250)
T PRK00517        249 KK  250 (250)
T ss_pred             eC
Confidence            74

>PLN02336 phosphoethanolamine N-methyltransferase

Probab=99.53  E-value=1.1e-13  Score=134.90  Aligned_cols=136  Identities=18%  Similarity=0.241  Sum_probs=103.0

Q ss_pred             HHHcccCCCCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhc--------------CCCCCCCCce
Q 019861          168 LMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQ--------------ESNFPKDSID  233 (334)
Q Consensus       168 ~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~--------------~~~~~~~~fD  233 (334)
                      .+...+...++.+|||||||+|.++..+++.+.  +++|+|+++.+++.+++....              ..++++++||
T Consensus        28 ~il~~l~~~~~~~vLDlGcG~G~~~~~la~~~~--~v~giD~s~~~l~~a~~~~~~~~~i~~~~~d~~~~~~~~~~~~fD  105 (475)
T PLN02336         28 EILSLLPPYEGKSVLELGAGIGRFTGELAKKAG--QVIALDFIESVIKKNESINGHYKNVKFMCADVTSPDLNISDGSVD  105 (475)
T ss_pred             HHHhhcCccCCCEEEEeCCCcCHHHHHHHhhCC--EEEEEeCCHHHHHHHHHHhccCCceEEEEecccccccCCCCCCEE
Confidence            445556655678999999999999999998865  999999999999987653221              1245678999


Q ss_pred             EEEeCccccCCCCH--HHHHHHHHHcccCCcEEEEEEeccCCCCCchHHHHHHHHHhhhhcCccCCCCHHHHHHHHHhCC
Q 019861          234 AVHAGAAIHCWSSP--STGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLCRACG  311 (334)
Q Consensus       234 ~V~~~~vl~h~~d~--~~~L~~i~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~l~~ll~~~G  311 (334)
                      +|++..+++|+++.  ..++++++++|+|||++++.+.........           ........+.+...+.+++.++|
T Consensus       106 ~I~~~~~l~~l~~~~~~~~l~~~~r~Lk~gG~l~~~d~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~f~~~~  174 (475)
T PLN02336        106 LIFSNWLLMYLSDKEVENLAERMVKWLKVGGYIFFRESCFHQSGDS-----------KRKNNPTHYREPRFYTKVFKECH  174 (475)
T ss_pred             EEehhhhHHhCCHHHHHHHHHHHHHhcCCCeEEEEEeccCCCCCcc-----------cccCCCCeecChHHHHHHHHHhe
Confidence            99999999999874  689999999999999999987653211000           00111233456889999999999


Q ss_pred             CcEEE
Q 019861          312 LVDFK  316 (334)
Q Consensus       312 f~~v~  316 (334)
                      |....
T Consensus       175 ~~~~~  179 (475)
T PLN02336        175 TRDED  179 (475)
T ss_pred             eccCC
Confidence            97664

>TIGR00537 hemK_rel_arch HemK-related putative methylase

Probab=99.53  E-value=3.8e-13  Score=113.95  Aligned_cols=126  Identities=13%  Similarity=0.144  Sum_probs=98.0

Q ss_pred             HHcccCCCCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCC-----------CCCCCCceEEEe
Q 019861          169 MKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES-----------NFPKDSIDAVHA  237 (334)
Q Consensus       169 l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~-----------~~~~~~fD~V~~  237 (334)
                      +...+...++.+|||+|||+|.++..++..++  +++|+|+++.+++.++++.....           ....++||+|++
T Consensus        11 l~~~l~~~~~~~vLdlG~G~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~fD~Vi~   88 (179)
T TIGR00537        11 LEANLRELKPDDVLEIGAGTGLVAIRLKGKGK--CILTTDINPFAVKELRENAKLNNVGLDVVMTDLFKGVRGKFDVILF   88 (179)
T ss_pred             HHHHHHhcCCCeEEEeCCChhHHHHHHHhcCC--EEEEEECCHHHHHHHHHHHHHcCCceEEEEcccccccCCcccEEEE
Confidence            33444445567999999999999999999886  99999999999999998764321           123568999999


Q ss_pred             CccccCCCC---------------------HHHHHHHHHHcccCCcEEEEEEeccCCCCCchHHHHHHHHHhhhhcCccC
Q 019861          238 GAAIHCWSS---------------------PSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYT  296 (334)
Q Consensus       238 ~~vl~h~~d---------------------~~~~L~~i~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  296 (334)
                      +-.+++..+                     ...+++++.++|+|||.+++......                        
T Consensus        89 n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~~~------------------------  144 (179)
T TIGR00537        89 NPPYLPLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSSLN------------------------  144 (179)
T ss_pred             CCCCCCCcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEeccC------------------------
Confidence            987766653                     24579999999999999999775431                        


Q ss_pred             CCCHHHHHHHHHhCCCcEEEEeecCc
Q 019861          297 FLSEREIEDLCRACGLVDFKCTRNRG  322 (334)
Q Consensus       297 ~~t~~~l~~ll~~~Gf~~v~~~~~g~  322 (334)
                        ...++.+++++.||+.......|.
T Consensus       145 --~~~~~~~~l~~~gf~~~~~~~~~~  168 (179)
T TIGR00537       145 --GEPDTFDKLDERGFRYEIVAERGL  168 (179)
T ss_pred             --ChHHHHHHHHhCCCeEEEEEEeec
Confidence              256888999999998877665553

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.

>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated

Probab=99.52  E-value=2.9e-13  Score=119.14  Aligned_cols=137  Identities=20%  Similarity=0.213  Sum_probs=95.4

Q ss_pred             CCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCC------------CCCCCCceEEEeCccccC
Q 019861          176 VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES------------NFPKDSIDAVHAGAAIHC  243 (334)
Q Consensus       176 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~------------~~~~~~fD~V~~~~vl~h  243 (334)
                      .++.+|||||||+|.++..+++.+.  .|+|+|+++.+++.++++.....            +..+++||+|++..+++|
T Consensus        62 ~~~~~vLDvGcG~G~~~~~l~~~~~--~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~fD~v~~~~~l~~  139 (230)
T PRK07580         62 LTGLRILDAGCGVGSLSIPLARRGA--KVVASDISPQMVEEARERAPEAGLAGNITFEVGDLESLLGRFDTVVCLDVLIH  139 (230)
T ss_pred             CCCCEEEEEeCCCCHHHHHHHHcCC--EEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcCchhccCCcCEEEEcchhhc
Confidence            4577999999999999999998876  79999999999999998765321            123578999999999999


Q ss_pred             CCCH--HHHHHHHHHcccCCcEEEEEEeccCCCCCchHHHHHHHHHhh--hhcCccCCCCHHHHHHHHHhCCCcEEEEee
Q 019861          244 WSSP--STGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMM--QISGSYTFLSEREIEDLCRACGLVDFKCTR  319 (334)
Q Consensus       244 ~~d~--~~~L~~i~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~t~~~l~~ll~~~Gf~~v~~~~  319 (334)
                      ++++  ..+++++.+.+++++. +...+ ..   ............+.  ....+...++.+++.++++++||++.+...
T Consensus       140 ~~~~~~~~~l~~l~~~~~~~~~-i~~~~-~~---~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~  214 (230)
T PRK07580        140 YPQEDAARMLAHLASLTRGSLI-FTFAP-YT---PLLALLHWIGGLFPGPSRTTRIYPHREKGIRRALAAAGFKVVRTER  214 (230)
T ss_pred             CCHHHHHHHHHHHHhhcCCeEE-EEECC-cc---HHHHHHHHhccccCCccCCCCccccCHHHHHHHHHHCCCceEeeee
Confidence            8855  4678888887654443 33221 11   11111111111111  112234567899999999999999887543

>PRK04266 fibrillarin; Provisional

Probab=99.49  E-value=1.3e-12  Score=114.28  Aligned_cols=137  Identities=11%  Similarity=0.087  Sum_probs=93.9

Q ss_pred             ccCCCCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCC---------CC------CCCCceEEE
Q 019861          172 YLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES---------NF------PKDSIDAVH  236 (334)
Q Consensus       172 ~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~---------~~------~~~~fD~V~  236 (334)
                      .+...++.+|||+|||+|.++..+++..+...|+|+|+++.|++.+.++.....         ..      -.++||+|+
T Consensus        67 ~l~i~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~~~nv~~i~~D~~~~~~~~~l~~~~D~i~  146 (226)
T PRK04266         67 NFPIKKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEERKNIIPILADARKPERYAHVVEKVDVIY  146 (226)
T ss_pred             hCCCCCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhhcCCcEEEECCCCCcchhhhccccCCEEE
Confidence            466677899999999999999999987544689999999999886655433211         00      024689988


Q ss_pred             eCccccCCCCH---HHHHHHHHHcccCCcEEEEEEeccCCCCCchHHHHHHHHHhhhhcCccCCCCHHHHHHHHHhCCCc
Q 019861          237 AGAAIHCWSSP---STGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLCRACGLV  313 (334)
Q Consensus       237 ~~~vl~h~~d~---~~~L~~i~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~l~~ll~~~Gf~  313 (334)
                      +.     +.+|   ..+|+++.++|||||.+++..+-.. ......              +...  .++..++++++||+
T Consensus       147 ~d-----~~~p~~~~~~L~~~~r~LKpGG~lvI~v~~~~-~d~~~~--------------~~~~--~~~~~~~l~~aGF~  204 (226)
T PRK04266        147 QD-----VAQPNQAEIAIDNAEFFLKDGGYLLLAIKARS-IDVTKD--------------PKEI--FKEEIRKLEEGGFE  204 (226)
T ss_pred             EC-----CCChhHHHHHHHHHHHhcCCCcEEEEEEeccc-ccCcCC--------------HHHH--HHHHHHHHHHcCCe
Confidence            53     3444   3468999999999999999754321 000000              0011  13445999999999


Q ss_pred             EEEEeecC----cEEEEEEEc
Q 019861          314 DFKCTRNR----GFVMFTATK  330 (334)
Q Consensus       314 ~v~~~~~g----~~~~~~a~K  330 (334)
                      +++....+    .++++++++
T Consensus       205 ~i~~~~l~p~~~~h~~~v~~~  225 (226)
T PRK04266        205 ILEVVDLEPYHKDHAAVVARK  225 (226)
T ss_pred             EEEEEcCCCCcCCeEEEEEEc
Confidence            99876654    357776665

>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family

Probab=99.48  E-value=8.8e-13  Score=114.41  Aligned_cols=122  Identities=21%  Similarity=0.182  Sum_probs=90.2

Q ss_pred             CCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhc---------------C------C---CCC---
Q 019861          176 VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQ---------------E------S---NFP---  228 (334)
Q Consensus       176 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~---------------~------~---~~~---  228 (334)
                      .++.+|||+|||.|..+..|+++|.  +|+|+|+|+.+++.+.+....               .      .   .++   
T Consensus        33 ~~~~rvLd~GCG~G~da~~LA~~G~--~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~  110 (213)
T TIGR03840        33 PAGARVFVPLCGKSLDLAWLAEQGH--RVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTAAD  110 (213)
T ss_pred             CCCCeEEEeCCCchhHHHHHHhCCC--eEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCCCccc
Confidence            3567999999999999999999998  999999999999986432110               0      0   111   


Q ss_pred             CCCceEEEeCccccCCCCH--HHHHHHHHHcccCCcEEEEEEeccCCCCCchHHHHHHHHHhhhhcCccCCCCHHHHHHH
Q 019861          229 KDSIDAVHAGAAIHCWSSP--STGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDL  306 (334)
Q Consensus       229 ~~~fD~V~~~~vl~h~~d~--~~~L~~i~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~l~~l  306 (334)
                      .+.||.|+...+++|++..  ...++.+.++|+|||++++.+........               .+....++.+++.++
T Consensus       111 ~~~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkpgG~~ll~~~~~~~~~~---------------~gpp~~~~~~eL~~~  175 (213)
T TIGR03840       111 LGPVDAVYDRAALIALPEEMRQRYAAHLLALLPPGARQLLITLDYDQSEM---------------AGPPFSVSPAEVEAL  175 (213)
T ss_pred             CCCcCEEEechhhccCCHHHHHHHHHHHHHHcCCCCeEEEEEEEcCCCCC---------------CCcCCCCCHHHHHHH
Confidence            3579999999999999743  46899999999999998887776532110               112245799999998


Q ss_pred             HHhCCCcEE
Q 019861          307 CRACGLVDF  315 (334)
Q Consensus       307 l~~~Gf~~v  315 (334)
                      +.. +|.+.
T Consensus       176 f~~-~~~i~  183 (213)
T TIGR03840       176 YGG-HYEIE  183 (213)
T ss_pred             hcC-CceEE
Confidence            863 44433

Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.

>TIGR00138 gidB 16S rRNA methyltransferase GidB

Probab=99.47  E-value=1.4e-12  Score=110.41  Aligned_cols=88  Identities=17%  Similarity=0.191  Sum_probs=71.2

Q ss_pred             CCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCC------------C-CCCCCceEEEeCccccC
Q 019861          177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES------------N-FPKDSIDAVHAGAAIHC  243 (334)
Q Consensus       177 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~------------~-~~~~~fD~V~~~~vl~h  243 (334)
                      ++.+|||+|||+|.++..++..++..+|+|+|+++.+++.++++.....            . ..+++||+|++..    
T Consensus        42 ~~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~~~~i~~i~~d~~~~~~~~~fD~I~s~~----  117 (181)
T TIGR00138        42 DGKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELGLNNVEIVNGRAEDFQHEEQFDVITSRA----  117 (181)
T ss_pred             CCCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhCCCCeEEEecchhhccccCCccEEEehh----
Confidence            3789999999999999998887776789999999999998887654321            1 1357899999976    


Q ss_pred             CCCHHHHHHHHHHcccCCcEEEEEE
Q 019861          244 WSSPSTGVAEISRVLRPGGVFVGTT  268 (334)
Q Consensus       244 ~~d~~~~L~~i~r~LkpgG~lii~~  268 (334)
                      +.+...+++.+.++|+|||.+++..
T Consensus       118 ~~~~~~~~~~~~~~LkpgG~lvi~~  142 (181)
T TIGR00138       118 LASLNVLLELTLNLLKVGGYFLAYK  142 (181)
T ss_pred             hhCHHHHHHHHHHhcCCCCEEEEEc
Confidence            3456677889999999999999753

GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.

>PLN02232 ubiquinone biosynthesis methyltransferase

Probab=99.46  E-value=4.5e-13  Score=111.32  Aligned_cols=125  Identities=17%  Similarity=0.158  Sum_probs=87.8

Q ss_pred             EEEeCCHHHHHHHHHHHhc-----------------CCCCCCCCceEEEeCccccCCCCHHHHHHHHHHcccCCcEEEEE
Q 019861          205 VALDYSENMLKQCYEFVQQ-----------------ESNFPKDSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGT  267 (334)
Q Consensus       205 ~giD~s~~~~~~a~~~~~~-----------------~~~~~~~~fD~V~~~~vl~h~~d~~~~L~~i~r~LkpgG~lii~  267 (334)
                      +|+|+|++|++.|+++...                 ..++++++||+|++..+++|++|+..+|++++|+|||||.+++.
T Consensus         1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~v~~~~~l~~~~d~~~~l~ei~rvLkpGG~l~i~   80 (160)
T PLN02232          1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDLPFDDCEFDAVTMGYGLRNVVDRLRAMKEMYRVLKPGSRVSIL   80 (160)
T ss_pred             CeEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhCCCCCCCeeEEEecchhhcCCCHHHHHHHHHHHcCcCeEEEEE
Confidence            4899999999999765431                 11567889999999999999999999999999999999999999


Q ss_pred             EeccCCCCCchHHHHHHH-------HHhhh----h----cCccCCCCHHHHHHHHHhCCCcEEEE--eecCcEEEEEEE
Q 019861          268 TYIVDGPFNLIPFSRLLR-------QNMMQ----I----SGSYTFLSEREIEDLCRACGLVDFKC--TRNRGFVMFTAT  329 (334)
Q Consensus       268 ~~~~~~~~~~~~~~~~~~-------~~~~~----~----~~~~~~~t~~~l~~ll~~~Gf~~v~~--~~~g~~~~~~a~  329 (334)
                      +.................       .....    +    .....+.+.+++.++|+++||+.++.  ...|...++++-
T Consensus        81 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~yl~~si~~f~~~~el~~ll~~aGF~~~~~~~~~~g~~~~~~~~  159 (160)
T PLN02232         81 DFNKSNQSVTTFMQGWMIDNVVVPVATVYDLAKEYEYLKYSINGYLTGEELETLALEAGFSSACHYEISGGFMGNLVAM  159 (160)
T ss_pred             ECCCCChHHHHHHHHHHccchHhhhhHHhCChHHHHhHHHHHHHCcCHHHHHHHHHHcCCCcceEEECcchHhHeeEee
Confidence            887543211100000000       00000    0    11235779999999999999987774  455666666654

>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase

Probab=99.46  E-value=9.4e-13  Score=113.63  Aligned_cols=94  Identities=12%  Similarity=0.149  Sum_probs=76.7

Q ss_pred             CCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcC--------CCCCCCCceEEEeCccccCCC--C
Q 019861          177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQE--------SNFPKDSIDAVHAGAAIHCWS--S  246 (334)
Q Consensus       177 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~--------~~~~~~~fD~V~~~~vl~h~~--d  246 (334)
                      ++.+|||||||+|.++..++...+..+++|+|+|+.+++.|+++....        .++++++||+|++..+|+|++  +
T Consensus        43 ~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~~~~~~~~~d~~~~~~~~sfD~V~~~~vL~hl~p~~  122 (204)
T TIGR03587        43 KIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYLPNINIIQGSLFDPFKDNFFDLVLTKGVLIHINPDN  122 (204)
T ss_pred             CCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhCCCCcEEEeeccCCCCCCCEEEEEECChhhhCCHHH
Confidence            467899999999999999988755569999999999999999864321        256788999999999999996  2


Q ss_pred             HHHHHHHHHHcccCCcEEEEEEeccC
Q 019861          247 PSTGVAEISRVLRPGGVFVGTTYIVD  272 (334)
Q Consensus       247 ~~~~L~~i~r~LkpgG~lii~~~~~~  272 (334)
                      ...+++++.+++  ++.+++.+...+
T Consensus       123 ~~~~l~el~r~~--~~~v~i~e~~~~  146 (204)
T TIGR03587       123 LPTAYRELYRCS--NRYILIAEYYNP  146 (204)
T ss_pred             HHHHHHHHHhhc--CcEEEEEEeeCC
Confidence            357888888887  567777776544

Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme

>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]

Probab=99.45  E-value=3.3e-13  Score=113.18  Aligned_cols=105  Identities=17%  Similarity=0.232  Sum_probs=92.8

Q ss_pred             HHHHcccCCCCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCC--------CCCCCCceEEEeC
Q 019861          167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES--------NFPKDSIDAVHAG  238 (334)
Q Consensus       167 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~--------~~~~~~fD~V~~~  238 (334)
                      ..+...++..+..+|.|+|||+|..+..|+++.|.+.++|+|-|++|++.|++++....        --++...|+++++
T Consensus        20 ~dLla~Vp~~~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~rlp~~~f~~aDl~~w~p~~~~dllfaN   99 (257)
T COG4106          20 RDLLARVPLERPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQRLPDATFEEADLRTWKPEQPTDLLFAN   99 (257)
T ss_pred             HHHHhhCCccccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHhCCCCceecccHhhcCCCCccchhhhh
Confidence            35566677778899999999999999999999999999999999999999988765432        2346789999999


Q ss_pred             ccccCCCCHHHHHHHHHHcccCCcEEEEEEecc
Q 019861          239 AAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIV  271 (334)
Q Consensus       239 ~vl~h~~d~~~~L~~i~r~LkpgG~lii~~~~~  271 (334)
                      .+|+.++|-...|..+...|.|||+|.+..|+.
T Consensus       100 AvlqWlpdH~~ll~rL~~~L~Pgg~LAVQmPdN  132 (257)
T COG4106         100 AVLQWLPDHPELLPRLVSQLAPGGVLAVQMPDN  132 (257)
T ss_pred             hhhhhccccHHHHHHHHHhhCCCceEEEECCCc
Confidence            999999999999999999999999999998875

>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]

Probab=99.45  E-value=3.2e-12  Score=114.48  Aligned_cols=133  Identities=21%  Similarity=0.395  Sum_probs=106.5

Q ss_pred             HHHHHcccCCCCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCC-------------CCC-CCC
Q 019861          166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES-------------NFP-KDS  231 (334)
Q Consensus       166 ~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~-------------~~~-~~~  231 (334)
                      .+.+.+++.  ++.+|||+|||+|-++..+++.|. ..++|+|+++.+++.++++.....             ..+ .++
T Consensus       153 L~~Le~~~~--~g~~vlDvGcGSGILaIAa~kLGA-~~v~g~DiDp~AV~aa~eNa~~N~v~~~~~~~~~~~~~~~~~~~  229 (300)
T COG2264         153 LEALEKLLK--KGKTVLDVGCGSGILAIAAAKLGA-KKVVGVDIDPQAVEAARENARLNGVELLVQAKGFLLLEVPENGP  229 (300)
T ss_pred             HHHHHHhhc--CCCEEEEecCChhHHHHHHHHcCC-ceEEEecCCHHHHHHHHHHHHHcCCchhhhcccccchhhcccCc
Confidence            344555554  488999999999999999999985 579999999999999999866432             122 369


Q ss_pred             ceEEEeCccccCCCCH-HHHHHHHHHcccCCcEEEEEEeccCCCCCchHHHHHHHHHhhhhcCccCCCCHHHHHHHHHhC
Q 019861          232 IDAVHAGAAIHCWSSP-STGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLCRAC  310 (334)
Q Consensus       232 fD~V~~~~vl~h~~d~-~~~L~~i~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~l~~ll~~~  310 (334)
                      ||+|+++-    +.++ ..+..++.+.|+|||+++++-...+                          -.+.+.+.++++
T Consensus       230 ~DvIVANI----LA~vl~~La~~~~~~lkpgg~lIlSGIl~~--------------------------q~~~V~~a~~~~  279 (300)
T COG2264         230 FDVIVANI----LAEVLVELAPDIKRLLKPGGRLILSGILED--------------------------QAESVAEAYEQA  279 (300)
T ss_pred             ccEEEehh----hHHHHHHHHHHHHHHcCCCceEEEEeehHh--------------------------HHHHHHHHHHhC
Confidence            99999985    2344 3677889999999999999775421                          156788999999


Q ss_pred             CCcEEEEeecCcEEEEEEEcC
Q 019861          311 GLVDFKCTRNRGFVMFTATKP  331 (334)
Q Consensus       311 Gf~~v~~~~~g~~~~~~a~K~  331 (334)
                      ||++++....+-|..+.++|.
T Consensus       280 gf~v~~~~~~~eW~~i~~kr~  300 (300)
T COG2264         280 GFEVVEVLEREEWVAIVGKRK  300 (300)
T ss_pred             CCeEeEEEecCCEEEEEEEcC
Confidence            999999988898999998874

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=99.44  E-value=8.1e-13  Score=111.73  Aligned_cols=149  Identities=21%  Similarity=0.215  Sum_probs=113.8

Q ss_pred             HhcCCCCcHHHHHHHHcccCCCCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcC----------
Q 019861          155 VWGGFPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQE----------  224 (334)
Q Consensus       155 ~~~~~~~~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~----------  224 (334)
                      .+-+|..|+.+.++|...- ..+-.++||+|||||.++..+...-.  ..+|+|+|.+|++.|.++-.-+          
T Consensus       104 dkL~Y~vP~~l~emI~~~~-~g~F~~~lDLGCGTGL~G~~lR~~a~--~ltGvDiS~nMl~kA~eKg~YD~L~~Aea~~F  180 (287)
T COG4976         104 DKLGYSVPELLAEMIGKAD-LGPFRRMLDLGCGTGLTGEALRDMAD--RLTGVDISENMLAKAHEKGLYDTLYVAEAVLF  180 (287)
T ss_pred             HHhcCccHHHHHHHHHhcc-CCccceeeecccCcCcccHhHHHHHh--hccCCchhHHHHHHHHhccchHHHHHHHHHHH
Confidence            3457777777777776543 33357999999999999999988865  8999999999999998752111          


Q ss_pred             C-CCCCCCceEEEeCccccCCCCHHHHHHHHHHcccCCcEEEEEEeccCCCCCchHHHHHHHHHhhhhcCccC-CCCHHH
Q 019861          225 S-NFPKDSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYT-FLSERE  302 (334)
Q Consensus       225 ~-~~~~~~fD~V~~~~vl~h~~d~~~~L~~i~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~t~~~  302 (334)
                      . ...+.+||+|++..||-++.+.+.++.-+...|+|||.+.++.-.......   +.       .  ..+.+ -.+..-
T Consensus       181 l~~~~~er~DLi~AaDVl~YlG~Le~~~~~aa~~L~~gGlfaFSvE~l~~~~~---f~-------l--~ps~RyAH~~~Y  248 (287)
T COG4976         181 LEDLTQERFDLIVAADVLPYLGALEGLFAGAAGLLAPGGLFAFSVETLPDDGG---FV-------L--GPSQRYAHSESY  248 (287)
T ss_pred             hhhccCCcccchhhhhHHHhhcchhhHHHHHHHhcCCCceEEEEecccCCCCC---ee-------c--chhhhhccchHH
Confidence            1 245688999999999999999999999999999999999998887654311   10       0  01111 235678


Q ss_pred             HHHHHHhCCCcEEEEe
Q 019861          303 IEDLCRACGLVDFKCT  318 (334)
Q Consensus       303 l~~ll~~~Gf~~v~~~  318 (334)
                      ++.+++..||+++++.
T Consensus       249 Vr~~l~~~Gl~~i~~~  264 (287)
T COG4976         249 VRALLAASGLEVIAIE  264 (287)
T ss_pred             HHHHHHhcCceEEEee
Confidence            9999999999998843

>PRK06922 hypothetical protein; Provisional

Probab=99.44  E-value=1.4e-12  Score=127.36  Aligned_cols=95  Identities=24%  Similarity=0.375  Sum_probs=80.4

Q ss_pred             CCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcC-------------CC--CCCCCceEEEeCccc
Q 019861          177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQE-------------SN--FPKDSIDAVHAGAAI  241 (334)
Q Consensus       177 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~-------------~~--~~~~~fD~V~~~~vl  241 (334)
                      ++.+|||||||+|.++..++...+..+++|+|+|+.|++.|+++....             .+  +++++||+|+++.++
T Consensus       418 ~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl~~~g~~ie~I~gDa~dLp~~fedeSFDvVVsn~vL  497 (677)
T PRK06922        418 KGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKKQNEGRSWNVIKGDAINLSSSFEKESVDTIVYSSIL  497 (677)
T ss_pred             CCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCCeEEEEcchHhCccccCCCCEEEEEEchHH
Confidence            478999999999999999988877889999999999999998764321             12  567899999999999


Q ss_pred             cCCC-------------CHHHHHHHHHHcccCCcEEEEEEecc
Q 019861          242 HCWS-------------SPSTGVAEISRVLRPGGVFVGTTYIV  271 (334)
Q Consensus       242 ~h~~-------------d~~~~L~~i~r~LkpgG~lii~~~~~  271 (334)
                      ||+.             ++..+|++++++|||||.+++.+...
T Consensus       498 H~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D~v~  540 (677)
T PRK06922        498 HELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRDGIM  540 (677)
T ss_pred             HhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEeCcc
Confidence            8762             45789999999999999999987643

>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins

Probab=99.43  E-value=4.9e-12  Score=105.86  Aligned_cols=141  Identities=13%  Similarity=0.157  Sum_probs=97.2

Q ss_pred             ccCCCCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCC-----------CCCCCCceEEEeCcc
Q 019861          172 YLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES-----------NFPKDSIDAVHAGAA  240 (334)
Q Consensus       172 ~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~-----------~~~~~~fD~V~~~~v  240 (334)
                      .++...-.++||+|||.|.++..|+....  .++++|+++.+++.|++++....           ..|+++||+|+++.+
T Consensus        38 aLp~~ry~~alEvGCs~G~lT~~LA~rCd--~LlavDis~~Al~~Ar~Rl~~~~~V~~~~~dvp~~~P~~~FDLIV~SEV  115 (201)
T PF05401_consen   38 ALPRRRYRRALEVGCSIGVLTERLAPRCD--RLLAVDISPRALARARERLAGLPHVEWIQADVPEFWPEGRFDLIVLSEV  115 (201)
T ss_dssp             HHTTSSEEEEEEE--TTSHHHHHHGGGEE--EEEEEES-HHHHHHHHHHTTT-SSEEEEES-TTT---SS-EEEEEEES-
T ss_pred             hcCccccceeEecCCCccHHHHHHHHhhC--ceEEEeCCHHHHHHHHHhcCCCCCeEEEECcCCCCCCCCCeeEEEEehH
Confidence            45555567999999999999999999975  99999999999999999987643           356899999999999


Q ss_pred             ccCCCCH---HHHHHHHHHcccCCcEEEEEEeccCCCCCchHHHHHHHHHhhhhcCccCCCCHHHHHHHHHhCCCcEEE-
Q 019861          241 IHCWSSP---STGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLCRACGLVDFK-  316 (334)
Q Consensus       241 l~h~~d~---~~~L~~i~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~l~~ll~~~Gf~~v~-  316 (334)
                      ++++.+.   ..+++.+.+.|+|||.+++......       .       ...   ..+.+..+.+.++|.+. |..++ 
T Consensus       116 lYYL~~~~~L~~~l~~l~~~L~pgG~LV~g~~rd~-------~-------c~~---wgh~~ga~tv~~~~~~~-~~~~~~  177 (201)
T PF05401_consen  116 LYYLDDAEDLRAALDRLVAALAPGGHLVFGHARDA-------N-------CRR---WGHAAGAETVLEMLQEH-LTEVER  177 (201)
T ss_dssp             GGGSSSHHHHHHHHHHHHHTEEEEEEEEEEEE-HH-------H-------HHH---TT-S--HHHHHHHHHHH-SEEEEE
T ss_pred             hHcCCCHHHHHHHHHHHHHHhCCCCEEEEEEecCC-------c-------ccc---cCcccchHHHHHHHHHH-hhheeE
Confidence            9999864   4689999999999999999776310       0       001   12445899999999887 44444 


Q ss_pred             Eee-----cCcEEEEEEEcCC
Q 019861          317 CTR-----NRGFVMFTATKPS  332 (334)
Q Consensus       317 ~~~-----~g~~~~~~a~K~~  332 (334)
                      ..-     +....+...+||.
T Consensus       178 ~~~~~~~~~~~~~~~~~~~~~  198 (201)
T PF05401_consen  178 VECRGGSPNEDCLLARFRNPV  198 (201)
T ss_dssp             EEEE-SSTTSEEEEEEEE--S
T ss_pred             EEEcCCCCCCceEeeeecCCc
Confidence            221     2235666666663

The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.

>PRK14967 putative methyltransferase; Provisional

Probab=99.43  E-value=3.3e-12  Score=112.00  Aligned_cols=152  Identities=17%  Similarity=0.147  Sum_probs=99.0

Q ss_pred             CCCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCC------------CCCCCCceEEEeCcccc
Q 019861          175 PVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES------------NFPKDSIDAVHAGAAIH  242 (334)
Q Consensus       175 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~------------~~~~~~fD~V~~~~vl~  242 (334)
                      ..++.+|||+|||+|.++..++..+ ..+++++|+++.+++.++++.....            .+++++||+|+++--..
T Consensus        34 ~~~~~~vLDlGcG~G~~~~~la~~~-~~~v~~vD~s~~~l~~a~~n~~~~~~~~~~~~~d~~~~~~~~~fD~Vi~npPy~  112 (223)
T PRK14967         34 LGPGRRVLDLCTGSGALAVAAAAAG-AGSVTAVDISRRAVRSARLNALLAGVDVDVRRGDWARAVEFRPFDVVVSNPPYV  112 (223)
T ss_pred             cCCCCeEEEecCCHHHHHHHHHHcC-CCeEEEEECCHHHHHHHHHHHHHhCCeeEEEECchhhhccCCCeeEEEECCCCC
Confidence            3457899999999999999988875 3589999999999999888654321            23567899999973211


Q ss_pred             CC-C--------------------CHHHHHHHHHHcccCCcEEEEEEeccCCCCCchHHHHHHHHHh---hhhcCccCCC
Q 019861          243 CW-S--------------------SPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNM---MQISGSYTFL  298 (334)
Q Consensus       243 h~-~--------------------d~~~~L~~i~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~  298 (334)
                      .- .                    ....+++++.++|+|||++++.......   .......+...-   .....+...|
T Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~~~~~~---~~~~~~~l~~~g~~~~~~~~~~~~~  189 (223)
T PRK14967        113 PAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQSELSG---VERTLTRLSEAGLDAEVVASQWIPF  189 (223)
T ss_pred             CCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEEecccC---HHHHHHHHHHCCCCeEEEEeeccCc
Confidence            11 0                    0245788999999999999987665422   122222222111   0111122234


Q ss_pred             CHHH--HHHHHHhCCCcEEEEeecCcEEEEEEEcC
Q 019861          299 SERE--IEDLCRACGLVDFKCTRNRGFVMFTATKP  331 (334)
Q Consensus       299 t~~~--l~~ll~~~Gf~~v~~~~~g~~~~~~a~K~  331 (334)
                      ....  ...++++.||-.. -......++++++||
T Consensus       190 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~  223 (223)
T PRK14967        190 GPVLRARAAWLERRGLLPP-GQREEELVVIRADKP  223 (223)
T ss_pred             cHHHHHHHHHHHHcCCCCC-CCceEEEEEEEeecC
Confidence            4333  4478899999754 344455678888886

>PRK14968 putative methyltransferase; Provisional

Probab=99.43  E-value=6.9e-12  Score=106.72  Aligned_cols=122  Identities=19%  Similarity=0.236  Sum_probs=90.2

Q ss_pred             HHHcccCCCCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCC---------------CCCCCCc
Q 019861          168 LMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES---------------NFPKDSI  232 (334)
Q Consensus       168 ~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~---------------~~~~~~f  232 (334)
                      .+...+...++.+|||+|||+|.++..++..+  .+++|+|+++.+++.+++++....               .+.+++|
T Consensus        14 ~l~~~~~~~~~~~vLd~G~G~G~~~~~l~~~~--~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~   91 (188)
T PRK14968         14 LLAENAVDKKGDRVLEVGTGSGIVAIVAAKNG--KKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFEPFRGDKF   91 (188)
T ss_pred             HHHHhhhccCCCEEEEEccccCHHHHHHHhhc--ceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEeccccccccccCc
Confidence            33444444567899999999999999999885  499999999999999987654211               2334589


Q ss_pred             eEEEeCccccCC-----------------CC----HHHHHHHHHHcccCCcEEEEEEeccCCCCCchHHHHHHHHHhhhh
Q 019861          233 DAVHAGAAIHCW-----------------SS----PSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQI  291 (334)
Q Consensus       233 D~V~~~~vl~h~-----------------~d----~~~~L~~i~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~  291 (334)
                      |+|+++..+.+.                 .+    ...+++++.++|+|||.+++..+..                    
T Consensus        92 d~vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~~~--------------------  151 (188)
T PRK14968         92 DVILFNPPYLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQSSL--------------------  151 (188)
T ss_pred             eEEEECCCcCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEccc--------------------
Confidence            999987543321                 11    3467999999999999988865431                    


Q ss_pred             cCccCCCCHHHHHHHHHhCCCcEEEE
Q 019861          292 SGSYTFLSEREIEDLCRACGLVDFKC  317 (334)
Q Consensus       292 ~~~~~~~t~~~l~~ll~~~Gf~~v~~  317 (334)
                            ...+++.++++++||++...
T Consensus       152 ------~~~~~l~~~~~~~g~~~~~~  171 (188)
T PRK14968        152 ------TGEDEVLEYLEKLGFEAEVV  171 (188)
T ss_pred             ------CCHHHHHHHHHHCCCeeeee
Confidence                  23567889999999987663

>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences

Probab=99.42  E-value=2.5e-12  Score=116.21  Aligned_cols=132  Identities=23%  Similarity=0.378  Sum_probs=102.0

Q ss_pred             HHHHcccCCCCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCC-----------CCCCCCceEE
Q 019861          167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES-----------NFPKDSIDAV  235 (334)
Q Consensus       167 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~-----------~~~~~~fD~V  235 (334)
                      +.+.++..  ++.+|||+|||+|-++...++.|. .+|+|+|+++.+++.|+++.....           ....++||+|
T Consensus       153 ~~l~~~~~--~g~~vLDvG~GSGILaiaA~klGA-~~v~a~DiDp~Av~~a~~N~~~N~~~~~~~v~~~~~~~~~~~dlv  229 (295)
T PF06325_consen  153 ELLEKYVK--PGKRVLDVGCGSGILAIAAAKLGA-KKVVAIDIDPLAVEAARENAELNGVEDRIEVSLSEDLVEGKFDLV  229 (295)
T ss_dssp             HHHHHHSS--TTSEEEEES-TTSHHHHHHHHTTB-SEEEEEESSCHHHHHHHHHHHHTT-TTCEEESCTSCTCCS-EEEE
T ss_pred             HHHHHhcc--CCCEEEEeCCcHHHHHHHHHHcCC-CeEEEecCCHHHHHHHHHHHHHcCCCeeEEEEEecccccccCCEE
Confidence            44445543  478999999999999999999985 589999999999999999866432           2345899999


Q ss_pred             EeCccccCCCCHHHHHHHHHHcccCCcEEEEEEeccCCCCCchHHHHHHHHHhhhhcCccCCCCHHHHHHHHHhCCCcEE
Q 019861          236 HAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLCRACGLVDF  315 (334)
Q Consensus       236 ~~~~vl~h~~d~~~~L~~i~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~l~~ll~~~Gf~~v  315 (334)
                      +++-..+-   ...++..+.++|+|||+++++-....                          ..+++.+.+++ ||+++
T Consensus       230 vANI~~~v---L~~l~~~~~~~l~~~G~lIlSGIl~~--------------------------~~~~v~~a~~~-g~~~~  279 (295)
T PF06325_consen  230 VANILADV---LLELAPDIASLLKPGGYLILSGILEE--------------------------QEDEVIEAYKQ-GFELV  279 (295)
T ss_dssp             EEES-HHH---HHHHHHHCHHHEEEEEEEEEEEEEGG--------------------------GHHHHHHHHHT-TEEEE
T ss_pred             EECCCHHH---HHHHHHHHHHhhCCCCEEEEccccHH--------------------------HHHHHHHHHHC-CCEEE
Confidence            98754321   13567788999999999999776532                          35678888877 99999


Q ss_pred             EEeecCcEEEEEEEcC
Q 019861          316 KCTRNRGFVMFTATKP  331 (334)
Q Consensus       316 ~~~~~g~~~~~~a~K~  331 (334)
                      +....+.|..+.++|+
T Consensus       280 ~~~~~~~W~~l~~~Kk  295 (295)
T PF06325_consen  280 EEREEGEWVALVFKKK  295 (295)
T ss_dssp             EEEEETTEEEEEEEE-
T ss_pred             EEEEECCEEEEEEEeC
Confidence            9999999999998884

Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....

>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit

Probab=99.42  E-value=2.7e-12  Score=101.44  Aligned_cols=99  Identities=22%  Similarity=0.148  Sum_probs=77.6

Q ss_pred             HHHcccCCCCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCC---------------CCCCCCc
Q 019861          168 LMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES---------------NFPKDSI  232 (334)
Q Consensus       168 ~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~---------------~~~~~~f  232 (334)
                      .+...+...++.+|||+|||+|.++..+++..+..+++++|+++.+++.++++.....               +...++|
T Consensus        10 ~~~~~~~~~~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   89 (124)
T TIGR02469        10 LTLSKLRLRPGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGVSNIVIVEGDAPEALEDSLPEP   89 (124)
T ss_pred             HHHHHcCCCCCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCCCceEEEeccccccChhhcCCC
Confidence            3444455555779999999999999999998766799999999999999987654321               1123589


Q ss_pred             eEEEeCccccCCCCHHHHHHHHHHcccCCcEEEEEEe
Q 019861          233 DAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTY  269 (334)
Q Consensus       233 D~V~~~~vl~h~~d~~~~L~~i~r~LkpgG~lii~~~  269 (334)
                      |+|++....++   ...+++++.+.|+|||.+++...
T Consensus        90 D~v~~~~~~~~---~~~~l~~~~~~Lk~gG~li~~~~  123 (124)
T TIGR02469        90 DRVFIGGSGGL---LQEILEAIWRRLRPGGRIVLNAI  123 (124)
T ss_pred             CEEEECCcchh---HHHHHHHHHHHcCCCCEEEEEec
Confidence            99999876543   35889999999999999998653

This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.

>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional

Probab=99.42  E-value=9.4e-12  Score=115.41  Aligned_cols=104  Identities=20%  Similarity=0.275  Sum_probs=82.8

Q ss_pred             HHHHcccCCCCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCC-----------CCCCCCceEE
Q 019861          167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES-----------NFPKDSIDAV  235 (334)
Q Consensus       167 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~-----------~~~~~~fD~V  235 (334)
                      +.+...+.....++|||+|||+|.++..+++.++..+++++|+++.+++.+++++....           ...+++||+|
T Consensus       186 ~lLl~~l~~~~~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~~n~l~~~~~~~D~~~~~~~~fDlI  265 (342)
T PRK09489        186 QLLLSTLTPHTKGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLAANGLEGEVFASNVFSDIKGRFDMI  265 (342)
T ss_pred             HHHHHhccccCCCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCEEEEcccccccCCCccEE
Confidence            44555555444568999999999999999998877899999999999999998765432           1125789999


Q ss_pred             EeCccccCCC-----CHHHHHHHHHHcccCCcEEEEEEec
Q 019861          236 HAGAAIHCWS-----SPSTGVAEISRVLRPGGVFVGTTYI  270 (334)
Q Consensus       236 ~~~~vl~h~~-----d~~~~L~~i~r~LkpgG~lii~~~~  270 (334)
                      +++-.+|+..     ....+++++.++|+|||.+++....
T Consensus       266 vsNPPFH~g~~~~~~~~~~~i~~a~~~LkpgG~L~iVan~  305 (342)
T PRK09489        266 ISNPPFHDGIQTSLDAAQTLIRGAVRHLNSGGELRIVANA  305 (342)
T ss_pred             EECCCccCCccccHHHHHHHHHHHHHhcCcCCEEEEEEeC
Confidence            9998777633     3468999999999999999986653

>PLN03075 nicotianamine synthase; Provisional

Probab=99.42  E-value=5.2e-12  Score=113.49  Aligned_cols=130  Identities=12%  Similarity=0.127  Sum_probs=93.3

Q ss_pred             CCCcEEEECCCcCHHHHH--HHHcCCCCeEEEEeCCHHHHHHHHHHHhcCC--------------C-C-CCCCceEEEeC
Q 019861          177 LGGNIIDASCGSGLFSRI--FAKSGLFSLVVALDYSENMLKQCYEFVQQES--------------N-F-PKDSIDAVHAG  238 (334)
Q Consensus       177 ~~~~vLDiGcG~G~~~~~--l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~--------------~-~-~~~~fD~V~~~  238 (334)
                      ++.+|+|||||.|.++..  ++...+.+.++|+|+++.+++.|++.+....              . . ..+.||+|++.
T Consensus       123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~~l~~FDlVF~~  202 (296)
T PLN03075        123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTESLKEYDVVFLA  202 (296)
T ss_pred             CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhcccccCCcCEEEEe
Confidence            678999999998844333  3445777899999999999999999874311              1 1 23689999999


Q ss_pred             ccccCC--CCHHHHHHHHHHcccCCcEEEEEEeccCCCCCchHHHHHHHHHhhhhcCccCCCCHHHHHHHHHhCCCcEEE
Q 019861          239 AAIHCW--SSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLCRACGLVDFK  316 (334)
Q Consensus       239 ~vl~h~--~d~~~~L~~i~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~l~~ll~~~Gf~~v~  316 (334)
                       +++++  .++..+|+.+++.|+|||.+++.....  .   ..+             -+...++++++      ||++..
T Consensus       203 -ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr~~~G--~---r~~-------------LYp~v~~~~~~------gf~~~~  257 (296)
T PLN03075        203 -ALVGMDKEEKVKVIEHLGKHMAPGALLMLRSAHG--A---RAF-------------LYPVVDPCDLR------GFEVLS  257 (296)
T ss_pred             -cccccccccHHHHHHHHHHhcCCCcEEEEecccc--h---Hhh-------------cCCCCChhhCC------CeEEEE
Confidence             99998  588999999999999999999976321  1   111             22334555543      998877


Q ss_pred             Eeec-C--cEEEEEEEcC
Q 019861          317 CTRN-R--GFVMFTATKP  331 (334)
Q Consensus       317 ~~~~-g--~~~~~~a~K~  331 (334)
                      .... +  .-.+++++|+
T Consensus       258 ~~~P~~~v~Nsvi~~r~~  275 (296)
T PLN03075        258 VFHPTDEVINSVIIARKP  275 (296)
T ss_pred             EECCCCCceeeEEEEEee
Confidence            5532 2  3456666664

>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional

Probab=99.41  E-value=2e-11  Score=105.13  Aligned_cols=99  Identities=18%  Similarity=0.210  Sum_probs=77.2

Q ss_pred             HHHcccCCCCCCcEEEECCCcCHHHHHHHHc-CCCCeEEEEeCCHHHHHHHHHHHhcCC----------C------CCCC
Q 019861          168 LMKGYLKPVLGGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQQES----------N------FPKD  230 (334)
Q Consensus       168 ~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~~v~giD~s~~~~~~a~~~~~~~~----------~------~~~~  230 (334)
                      .....+...++.+|||+|||+|.++..++.. ++..+++++|+++.+++.++++.....          .      ...+
T Consensus        31 ~~l~~l~~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~l~~~~~  110 (198)
T PRK00377         31 LALSKLRLRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEILFTINE  110 (198)
T ss_pred             HHHHHcCCCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhhHhhcCC
Confidence            4445667777899999999999999888765 445699999999999999987754321          0      1136


Q ss_pred             CceEEEeCccccCCCCHHHHHHHHHHcccCCcEEEEEEe
Q 019861          231 SIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTY  269 (334)
Q Consensus       231 ~fD~V~~~~vl~h~~d~~~~L~~i~r~LkpgG~lii~~~  269 (334)
                      .||+|++..   ...++..+++++.++|+|||++++...
T Consensus       111 ~~D~V~~~~---~~~~~~~~l~~~~~~LkpgG~lv~~~~  146 (198)
T PRK00377        111 KFDRIFIGG---GSEKLKEIISASWEIIKKGGRIVIDAI  146 (198)
T ss_pred             CCCEEEECC---CcccHHHHHHHHHHHcCCCcEEEEEee
Confidence            799999864   345778899999999999999987554

>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed

Probab=99.41  E-value=2.4e-12  Score=111.08  Aligned_cols=95  Identities=19%  Similarity=0.155  Sum_probs=75.9

Q ss_pred             CCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCC---------------C--CCCCCceEEEeCc
Q 019861          177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES---------------N--FPKDSIDAVHAGA  239 (334)
Q Consensus       177 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~---------------~--~~~~~fD~V~~~~  239 (334)
                      ++.+|||+|||+|.++..+++..+..+++|+|+++.+++.++++.....               +  +++++||+|++.+
T Consensus        40 ~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~D~V~~~~  119 (202)
T PRK00121         40 DAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEGLTNLRLLCGDAVEVLLDMFPDGSLDRIYLNF  119 (202)
T ss_pred             CCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcCCCCEEEEecCHHHHHHHHcCccccceEEEEC
Confidence            4679999999999999999888776789999999999999987654211               1  4577899999876


Q ss_pred             cccCCC--------CHHHHHHHHHHcccCCcEEEEEEecc
Q 019861          240 AIHCWS--------SPSTGVAEISRVLRPGGVFVGTTYIV  271 (334)
Q Consensus       240 vl~h~~--------d~~~~L~~i~r~LkpgG~lii~~~~~  271 (334)
                      ...+..        ....+|+++.++|+|||.+++.+.+.
T Consensus       120 ~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~~~~  159 (202)
T PRK00121        120 PDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFATDWE  159 (202)
T ss_pred             CCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEcCCH
Confidence            543221        13678999999999999999977653

>KOG2361 consensus Predicted methyltransferase [General function prediction only]

Probab=99.41  E-value=1.4e-12  Score=111.33  Aligned_cols=134  Identities=16%  Similarity=0.215  Sum_probs=102.1

Q ss_pred             CcEEEECCCcCHHHHHHHHcCCC--CeEEEEeCCHHHHHHHHHHHhcC-----------------CCCCCCCceEEEeCc
Q 019861          179 GNIIDASCGSGLFSRIFAKSGLF--SLVVALDYSENMLKQCYEFVQQE-----------------SNFPKDSIDAVHAGA  239 (334)
Q Consensus       179 ~~vLDiGcG~G~~~~~l~~~~~~--~~v~giD~s~~~~~~a~~~~~~~-----------------~~~~~~~fD~V~~~~  239 (334)
                      .+|||||||.|....-+.+..++  ..+++.|.|+.+++..+++....                 .+...+++|+|++.+
T Consensus        73 ~~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~e~~~~afv~Dlt~~~~~~~~~~~svD~it~IF  152 (264)
T KOG2361|consen   73 ETILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYDESRVEAFVWDLTSPSLKEPPEEGSVDIITLIF  152 (264)
T ss_pred             hhheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccchhhhcccceeccchhccCCCCcCccceEEEEE
Confidence            38999999999998888887665  78999999999999988753321                 245678999999999


Q ss_pred             cccCCC--CHHHHHHHHHHcccCCcEEEEEEeccCCCCCchHHHHHHH-------HHhhhhcCccCCCCHHHHHHHHHhC
Q 019861          240 AIHCWS--SPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLR-------QNMMQISGSYTFLSEREIEDLCRAC  310 (334)
Q Consensus       240 vl~h~~--d~~~~L~~i~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~t~~~l~~ll~~~  310 (334)
                      ||.-++  ....++..++++|||||.+++-+......    ..++...       .+..++.....+|+.+++..++..+
T Consensus       153 vLSAi~pek~~~a~~nl~~llKPGG~llfrDYg~~Dl----aqlRF~~~~~i~~nfYVRgDGT~~YfF~~eeL~~~f~~a  228 (264)
T KOG2361|consen  153 VLSAIHPEKMQSVIKNLRTLLKPGGSLLFRDYGRYDL----AQLRFKKGQCISENFYVRGDGTRAYFFTEEELDELFTKA  228 (264)
T ss_pred             EEeccChHHHHHHHHHHHHHhCCCcEEEEeecccchH----HHHhccCCceeecceEEccCCceeeeccHHHHHHHHHhc
Confidence            998775  34589999999999999999998876432    1111110       0111122234689999999999999


Q ss_pred             CCcEEE
Q 019861          311 GLVDFK  316 (334)
Q Consensus       311 Gf~~v~  316 (334)
                      ||..++
T Consensus       229 gf~~~~  234 (264)
T KOG2361|consen  229 GFEEVQ  234 (264)
T ss_pred             ccchhc
Confidence            998776

>PRK13255 thiopurine S-methyltransferase; Reviewed

Probab=99.40  E-value=5e-12  Score=110.07  Aligned_cols=123  Identities=20%  Similarity=0.151  Sum_probs=89.6

Q ss_pred             CCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhc---------------C------C---CC---C
Q 019861          176 VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQ---------------E------S---NF---P  228 (334)
Q Consensus       176 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~---------------~------~---~~---~  228 (334)
                      .++.+|||+|||.|..+..|++.|.  +|+|+|+|+.+++.+......               .      .   .+   .
T Consensus        36 ~~~~rvL~~gCG~G~da~~LA~~G~--~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~~~  113 (218)
T PRK13255         36 PAGSRVLVPLCGKSLDMLWLAEQGH--EVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTAAD  113 (218)
T ss_pred             CCCCeEEEeCCCChHhHHHHHhCCC--eEEEEccCHHHHHHHHHHcCCCccccccccccccccCceEEEECcccCCCccc
Confidence            3567999999999999999999988  999999999999986432110               0      0   11   2


Q ss_pred             CCCceEEEeCccccCCCCH--HHHHHHHHHcccCCcEEEEEEeccCCCCCchHHHHHHHHHhhhhcCccCCCCHHHHHHH
Q 019861          229 KDSIDAVHAGAAIHCWSSP--STGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDL  306 (334)
Q Consensus       229 ~~~fD~V~~~~vl~h~~d~--~~~L~~i~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~l~~l  306 (334)
                      .+.||+|+...+++|++..  ...++.+.++|+|||++++.+........               .+....++.+++.++
T Consensus       114 ~~~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~pgG~~~l~~~~~~~~~~---------------~gPp~~~~~~el~~~  178 (218)
T PRK13255        114 LADVDAVYDRAALIALPEEMRERYVQQLAALLPAGCRGLLVTLDYPQEEL---------------AGPPFSVSDEEVEAL  178 (218)
T ss_pred             CCCeeEEEehHhHhhCCHHHHHHHHHHHHHHcCCCCeEEEEEEEeCCccC---------------CCCCCCCCHHHHHHH
Confidence            3589999999999999743  47899999999999986665554421100               112246799999999


Q ss_pred             HHhCCCcEEE
Q 019861          307 CRACGLVDFK  316 (334)
Q Consensus       307 l~~~Gf~~v~  316 (334)
                      +.. +|++..
T Consensus       179 ~~~-~~~i~~  187 (218)
T PRK13255        179 YAG-CFEIEL  187 (218)
T ss_pred             hcC-CceEEE
Confidence            964 254443

>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB

Probab=99.40  E-value=3e-12  Score=108.18  Aligned_cols=130  Identities=19%  Similarity=0.273  Sum_probs=90.3

Q ss_pred             HHcccCCCCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCC-------------CCCCCCceEE
Q 019861          169 MKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES-------------NFPKDSIDAV  235 (334)
Q Consensus       169 l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~-------------~~~~~~fD~V  235 (334)
                      +.+.++..+++++||+|||.|..+.+|++.|.  .|+++|.|+..++.+.+......             .+ ++.||+|
T Consensus        22 v~~a~~~~~~g~~LDlgcG~GRNalyLA~~G~--~VtAvD~s~~al~~l~~~a~~~~l~i~~~~~Dl~~~~~-~~~yD~I   98 (192)
T PF03848_consen   22 VLEAVPLLKPGKALDLGCGEGRNALYLASQGF--DVTAVDISPVALEKLQRLAEEEGLDIRTRVADLNDFDF-PEEYDFI   98 (192)
T ss_dssp             HHHHCTTS-SSEEEEES-TTSHHHHHHHHTT---EEEEEESSHHHHHHHHHHHHHTT-TEEEEE-BGCCBS--TTTEEEE
T ss_pred             HHHHHhhcCCCcEEEcCCCCcHHHHHHHHCCC--eEEEEECCHHHHHHHHHHHhhcCceeEEEEecchhccc-cCCcCEE
Confidence            33444555678999999999999999999998  99999999999998877654322             23 4689999


Q ss_pred             EeCccccCCCCH--HHHHHHHHHcccCCcEEEEEEeccCCCCCchHHHHHHHHHhhhhcCccCCCCHHHHHHHHHhCCCc
Q 019861          236 HAGAAIHCWSSP--STGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLCRACGLV  313 (334)
Q Consensus       236 ~~~~vl~h~~d~--~~~L~~i~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~l~~ll~~~Gf~  313 (334)
                      ++..|++|++.+  ..+++.+...++|||++++.+.... .....+            ......+.+.++.+.+.  ||+
T Consensus        99 ~st~v~~fL~~~~~~~i~~~m~~~~~pGG~~li~~~~~~-~d~p~~------------~~~~f~~~~~EL~~~y~--dW~  163 (192)
T PF03848_consen   99 VSTVVFMFLQRELRPQIIENMKAATKPGGYNLIVTFMET-PDYPCP------------SPFPFLLKPGELREYYA--DWE  163 (192)
T ss_dssp             EEESSGGGS-GGGHHHHHHHHHHTEEEEEEEEEEEEB---SSS--S------------S--S--B-TTHHHHHTT--TSE
T ss_pred             EEEEEeccCCHHHHHHHHHHHHhhcCCcEEEEEEEeccc-CCCCCC------------CCCCcccCHHHHHHHhC--CCe
Confidence            999999998744  4789999999999999888766432 111000            11223456678888874  787


Q ss_pred             EEE
Q 019861          314 DFK  316 (334)
Q Consensus       314 ~v~  316 (334)
                      +++
T Consensus       164 il~  166 (192)
T PF03848_consen  164 ILK  166 (192)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            766

When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.

>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A

Probab=99.40  E-value=4.8e-13  Score=102.31  Aligned_cols=82  Identities=30%  Similarity=0.503  Sum_probs=64.8

Q ss_pred             EEEECCCcCHHHHHHHHcC---CCCeEEEEeCCHHHHHHHHHHHhcCC-------------CCCCCCceEEEeC-ccccC
Q 019861          181 IIDASCGSGLFSRIFAKSG---LFSLVVALDYSENMLKQCYEFVQQES-------------NFPKDSIDAVHAG-AAIHC  243 (334)
Q Consensus       181 vLDiGcG~G~~~~~l~~~~---~~~~v~giD~s~~~~~~a~~~~~~~~-------------~~~~~~fD~V~~~-~vl~h  243 (334)
                      |||+|||+|..+..+.+..   +..+++|+|+|+.+++.++++.....             ++.+++||+|++. .+++|
T Consensus         1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~~~~~~~~D~~~l~~~~~~~D~v~~~~~~~~~   80 (101)
T PF13649_consen    1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGPKVRFVQADARDLPFSDGKFDLVVCSGLSLHH   80 (101)
T ss_dssp             -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTTTSEEEESCTTCHHHHSSSEEEEEE-TTGGGG
T ss_pred             CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCCceEEEECCHhHCcccCCCeeEEEEcCCccCC
Confidence            7999999999999999874   34699999999999999999875432             2336799999995 55999


Q ss_pred             CCCH--HHHHHHHHHcccCCc
Q 019861          244 WSSP--STGVAEISRVLRPGG  262 (334)
Q Consensus       244 ~~d~--~~~L~~i~r~LkpgG  262 (334)
                      +.+.  ..+++++.++|+|||
T Consensus        81 ~~~~~~~~ll~~~~~~l~pgG  101 (101)
T PF13649_consen   81 LSPEELEALLRRIARLLRPGG  101 (101)
T ss_dssp             SSHHHHHHHHHHHHHTEEEEE
T ss_pred             CCHHHHHHHHHHHHHHhCCCC
Confidence            8754  589999999999998

>smart00138 MeTrc Methyltransferase, chemotaxis proteins

Probab=99.37  E-value=2.9e-12  Score=114.97  Aligned_cols=92  Identities=16%  Similarity=0.253  Sum_probs=72.2

Q ss_pred             CCCcEEEECCCcCH----HHHHHHHcCC-----CCeEEEEeCCHHHHHHHHHHHh-------------------------
Q 019861          177 LGGNIIDASCGSGL----FSRIFAKSGL-----FSLVVALDYSENMLKQCYEFVQ-------------------------  222 (334)
Q Consensus       177 ~~~~vLDiGcG~G~----~~~~l~~~~~-----~~~v~giD~s~~~~~~a~~~~~-------------------------  222 (334)
                      ++.+|+|+|||+|.    ++..+++.++     ..+++|+|+|+.+++.|++..-                         
T Consensus        99 ~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~~  178 (264)
T smart00138       99 RRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKYR  178 (264)
T ss_pred             CCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeEE
Confidence            45799999999996    4445555432     4589999999999999987420                         


Q ss_pred             ------c----------CCCCCCCCceEEEeCccccCCCCH--HHHHHHHHHcccCCcEEEEEE
Q 019861          223 ------Q----------ESNFPKDSIDAVHAGAAIHCWSSP--STGVAEISRVLRPGGVFVGTT  268 (334)
Q Consensus       223 ------~----------~~~~~~~~fD~V~~~~vl~h~~d~--~~~L~~i~r~LkpgG~lii~~  268 (334)
                            .          ..++++++||+|+|.++|+|++++  ..++++++++|+|||++++..
T Consensus       179 v~~~ir~~V~F~~~dl~~~~~~~~~fD~I~crnvl~yf~~~~~~~~l~~l~~~L~pGG~L~lg~  242 (264)
T smart00138      179 VKPELKERVRFAKHNLLAESPPLGDFDLIFCRNVLIYFDEPTQRKLLNRFAEALKPGGYLFLGH  242 (264)
T ss_pred             EChHHhCcCEEeeccCCCCCCccCCCCEEEechhHHhCCHHHHHHHHHHHHHHhCCCeEEEEEC
Confidence                  0          012347889999999999999755  479999999999999999843

Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.

>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional

Probab=99.35  E-value=2.6e-11  Score=113.28  Aligned_cols=103  Identities=18%  Similarity=0.194  Sum_probs=81.2

Q ss_pred             HHHHHcccCCCCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCC----------------CCCC
Q 019861          166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES----------------NFPK  229 (334)
Q Consensus       166 ~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~----------------~~~~  229 (334)
                      .+.+++.++...+.+|||+|||+|.++..+++.+|..+++++|.|+.+++.+++++....                .+++
T Consensus       217 trllL~~lp~~~~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~~~~~  296 (378)
T PRK15001        217 ARFFMQHLPENLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSGVEP  296 (378)
T ss_pred             HHHHHHhCCcccCCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEccccccCCC
Confidence            345667776655679999999999999999999888899999999999999998764221                1334


Q ss_pred             CCceEEEeCccccC---CCC--HHHHHHHHHHcccCCcEEEEEE
Q 019861          230 DSIDAVHAGAAIHC---WSS--PSTGVAEISRVLRPGGVFVGTT  268 (334)
Q Consensus       230 ~~fD~V~~~~vl~h---~~d--~~~~L~~i~r~LkpgG~lii~~  268 (334)
                      ++||+|+++--+|.   +.+  ...++++++++|+|||.+++..
T Consensus       297 ~~fDlIlsNPPfh~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV~  340 (378)
T PRK15001        297 FRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIVA  340 (378)
T ss_pred             CCEEEEEECcCcccCccCCHHHHHHHHHHHHHhcccCCEEEEEE
Confidence            58999999754443   222  2478999999999999999975

>PTZ00146 fibrillarin; Provisional

Probab=99.35  E-value=7.5e-11  Score=105.64  Aligned_cols=139  Identities=12%  Similarity=0.078  Sum_probs=88.4

Q ss_pred             cCCCCCCcEEEECCCcCHHHHHHHHc-CCCCeEEEEeCCHHHH----HHHHHHHh-----cCC--C----CCCCCceEEE
Q 019861          173 LKPVLGGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENML----KQCYEFVQ-----QES--N----FPKDSIDAVH  236 (334)
Q Consensus       173 l~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~~v~giD~s~~~~----~~a~~~~~-----~~~--~----~~~~~fD~V~  236 (334)
                      +...++.+|||+|||+|.++..+++. ++...|+++|+++.+.    +.++++..     .+.  +    ...+++|+|+
T Consensus       128 l~IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r~NI~~I~~Da~~p~~y~~~~~~vDvV~  207 (293)
T PTZ00146        128 IPIKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKRPNIVPIIEDARYPQKYRMLVPMVDVIF  207 (293)
T ss_pred             eccCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhcCCCEEEECCccChhhhhcccCCCCEEE
Confidence            34567889999999999999999987 3456899999998754    44432210     010  1    1235799999


Q ss_pred             eCccccCCCCHHHHHHHHHHcccCCcEEEEEEeccCCCCCchHHHHHHHHHhhhhcCccCCCCHHHHHHHHHhCCCcEEE
Q 019861          237 AGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLCRACGLVDFK  316 (334)
Q Consensus       237 ~~~vl~h~~d~~~~L~~i~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~l~~ll~~~Gf~~v~  316 (334)
                      +...  ...+...++.++.++|||||.+++........ ...+              ....|. +++ ++|+++||+.++
T Consensus       208 ~Dva--~pdq~~il~~na~r~LKpGG~~vI~ika~~id-~g~~--------------pe~~f~-~ev-~~L~~~GF~~~e  268 (293)
T PTZ00146        208 ADVA--QPDQARIVALNAQYFLKNGGHFIISIKANCID-STAK--------------PEVVFA-SEV-QKLKKEGLKPKE  268 (293)
T ss_pred             EeCC--CcchHHHHHHHHHHhccCCCEEEEEEeccccc-cCCC--------------HHHHHH-HHH-HHHHHcCCceEE
Confidence            9874  22233466678999999999999953322110 0000              001122 344 889999999888


Q ss_pred             EeecC----cEEEEEEEc
Q 019861          317 CTRNR----GFVMFTATK  330 (334)
Q Consensus       317 ~~~~g----~~~~~~a~K  330 (334)
                      .....    .+.++++++
T Consensus       269 ~v~L~Py~~~h~~v~~~~  286 (293)
T PTZ00146        269 QLTLEPFERDHAVVIGVY  286 (293)
T ss_pred             EEecCCccCCcEEEEEEE
Confidence            66543    344555443

>TIGR00406 prmA ribosomal protein L11 methyltransferase

Probab=99.35  E-value=1.3e-11  Score=112.30  Aligned_cols=115  Identities=18%  Similarity=0.259  Sum_probs=88.0

Q ss_pred             CCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCC-------------CCCCCCceEEEeCccccC
Q 019861          177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES-------------NFPKDSIDAVHAGAAIHC  243 (334)
Q Consensus       177 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~-------------~~~~~~fD~V~~~~vl~h  243 (334)
                      ++.+|||+|||+|.++..++..+ ..+++|+|+++.+++.++++.....             ...+++||+|+++...++
T Consensus       159 ~g~~VLDvGcGsG~lai~aa~~g-~~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~~~~~~~~fDlVvan~~~~~  237 (288)
T TIGR00406       159 KDKNVIDVGCGSGILSIAALKLG-AAKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYLEQPIEGKADVIVANILAEV  237 (288)
T ss_pred             CCCEEEEeCCChhHHHHHHHHcC-CCeEEEEECCHHHHHHHHHHHHHcCCCcceEEEecccccccCCCceEEEEecCHHH
Confidence            47899999999999998888776 3589999999999999998765321             223568999999765433


Q ss_pred             CCCHHHHHHHHHHcccCCcEEEEEEeccCCCCCchHHHHHHHHHhhhhcCccCCCCHHHHHHHHHhCCCcEEEEeecCc
Q 019861          244 WSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLCRACGLVDFKCTRNRG  322 (334)
Q Consensus       244 ~~d~~~~L~~i~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~l~~ll~~~Gf~~v~~~~~g~  322 (334)
                         ...++.++.++|+|||.++++.....                          ..+++.+.+++. |++++....+.
T Consensus       238 ---l~~ll~~~~~~LkpgG~li~sgi~~~--------------------------~~~~v~~~~~~~-f~~~~~~~~~~  286 (288)
T TIGR00406       238 ---IKELYPQFSRLVKPGGWLILSGILET--------------------------QAQSVCDAYEQG-FTVVEIRQREE  286 (288)
T ss_pred             ---HHHHHHHHHHHcCCCcEEEEEeCcHh--------------------------HHHHHHHHHHcc-CceeeEeccCC
Confidence               35788999999999999999765421                          245677777766 88877655443

Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.

>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]

Probab=99.34  E-value=1e-10  Score=97.15  Aligned_cols=138  Identities=20%  Similarity=0.243  Sum_probs=105.2

Q ss_pred             HHHHHHHcccCCCCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCC-------------CCCCC
Q 019861          164 KEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES-------------NFPKD  230 (334)
Q Consensus       164 ~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~-------------~~~~~  230 (334)
                      +.....+..|.+.++.+++|||||+|..+..++..++.++++++|-++++++..+++.....             .+++-
T Consensus        21 EIRal~ls~L~~~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g~Ap~~L~~~  100 (187)
T COG2242          21 EIRALTLSKLRPRPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFGVDNLEVVEGDAPEALPDL  100 (187)
T ss_pred             HHHHHHHHhhCCCCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCCcEEEEeccchHhhcCC
Confidence            34456667788889999999999999999999988999999999999999999888765432             12222


Q ss_pred             -CceEEEeCccccCCCCHHHHHHHHHHcccCCcEEEEEEeccCCCCCchHHHHHHHHHhhhhcCccCCCCHHHHHHHHHh
Q 019861          231 -SIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLCRA  309 (334)
Q Consensus       231 -~fD~V~~~~vl~h~~d~~~~L~~i~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~l~~ll~~  309 (334)
                       ++|.|+....    .+...+|+.+...|||||++++.....+                          +.....+.+++
T Consensus       101 ~~~daiFIGGg----~~i~~ile~~~~~l~~ggrlV~naitlE--------------------------~~~~a~~~~~~  150 (187)
T COG2242         101 PSPDAIFIGGG----GNIEEILEAAWERLKPGGRLVANAITLE--------------------------TLAKALEALEQ  150 (187)
T ss_pred             CCCCEEEECCC----CCHHHHHHHHHHHcCcCCeEEEEeecHH--------------------------HHHHHHHHHHH
Confidence             7999999887    3567789999999999999998665432                          34466788889


Q ss_pred             CCC-cEEEEee-----cCcEEEEEEEcC
Q 019861          310 CGL-VDFKCTR-----NRGFVMFTATKP  331 (334)
Q Consensus       310 ~Gf-~~v~~~~-----~g~~~~~~a~K~  331 (334)
                      .|+ ++++...     .+.+.++....|
T Consensus       151 ~g~~ei~~v~is~~~~lg~~~~~~~~nP  178 (187)
T COG2242         151 LGGREIVQVQISRGKPLGGGTMFRPVNP  178 (187)
T ss_pred             cCCceEEEEEeecceeccCeeEeecCCC
Confidence            999 6666332     244555555444

>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=99.34  E-value=1.6e-11  Score=106.19  Aligned_cols=96  Identities=20%  Similarity=0.252  Sum_probs=76.0

Q ss_pred             HHHHcccCCCCCCcEEEECCCcCHHHHHHHHcC-CCCeEEEEeCCHHHHHHHHHHHhcCC---------------CCCCC
Q 019861          167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSG-LFSLVVALDYSENMLKQCYEFVQQES---------------NFPKD  230 (334)
Q Consensus       167 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~~v~giD~s~~~~~~a~~~~~~~~---------------~~~~~  230 (334)
                      ..+.+.+...++.+|||||||+|..+..+++.. ...+|+++|+++.+++.+++++....               ....+
T Consensus        62 ~~~~~~l~~~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~~~~~  141 (205)
T PRK13944         62 AMMCELIEPRPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGLEKHA  141 (205)
T ss_pred             HHHHHhcCCCCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccCCccCC
Confidence            455566666678899999999999998888763 24589999999999999998765321               12246


Q ss_pred             CceEEEeCccccCCCCHHHHHHHHHHcccCCcEEEEEE
Q 019861          231 SIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTT  268 (334)
Q Consensus       231 ~fD~V~~~~vl~h~~d~~~~L~~i~r~LkpgG~lii~~  268 (334)
                      +||+|++..+++|++      .++.+.|+|||++++..
T Consensus       142 ~fD~Ii~~~~~~~~~------~~l~~~L~~gG~lvi~~  173 (205)
T PRK13944        142 PFDAIIVTAAASTIP------SALVRQLKDGGVLVIPV  173 (205)
T ss_pred             CccEEEEccCcchhh------HHHHHhcCcCcEEEEEE
Confidence            899999999988775      46889999999998854

>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific

Probab=99.33  E-value=4e-11  Score=106.86  Aligned_cols=126  Identities=22%  Similarity=0.259  Sum_probs=92.1

Q ss_pred             HHHHHHcccCCCCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCC-------------CCCCCC
Q 019861          165 EFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES-------------NFPKDS  231 (334)
Q Consensus       165 ~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~-------------~~~~~~  231 (334)
                      ..+.+...+.. .+.+|||+|||+|.++..++...+..+++|+|+++.+++.++++.....             .+++++
T Consensus        76 l~~~~l~~~~~-~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~  154 (251)
T TIGR03534        76 LVEAALERLKK-GPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARLGLDNVTFLQSDWFEPLPGGK  154 (251)
T ss_pred             HHHHHHHhccc-CCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhccCcCCc
Confidence            33444444432 3468999999999999999998777799999999999999998764321             345678


Q ss_pred             ceEEEeCcc------ccCCC------C--------------HHHHHHHHHHcccCCcEEEEEEeccCCCCCchHHHHHHH
Q 019861          232 IDAVHAGAA------IHCWS------S--------------PSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLR  285 (334)
Q Consensus       232 fD~V~~~~v------l~h~~------d--------------~~~~L~~i~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~  285 (334)
                      ||+|+++--      ++++.      +              ...+++++.++|+|||.+++...                
T Consensus       155 fD~Vi~npPy~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~~----------------  218 (251)
T TIGR03534       155 FDLIVSNPPYIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEIG----------------  218 (251)
T ss_pred             eeEEEECCCCCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEEC----------------
Confidence            999998421      11111      0              13578999999999999988432                


Q ss_pred             HHhhhhcCccCCCCHHHHHHHHHhCCCcEEEEe
Q 019861          286 QNMMQISGSYTFLSEREIEDLCRACGLVDFKCT  318 (334)
Q Consensus       286 ~~~~~~~~~~~~~t~~~l~~ll~~~Gf~~v~~~  318 (334)
                                 +...+++.++++++||+.++..
T Consensus       219 -----------~~~~~~~~~~l~~~gf~~v~~~  240 (251)
T TIGR03534       219 -----------YDQGEAVRALFEAAGFADVETR  240 (251)
T ss_pred             -----------ccHHHHHHHHHHhCCCCceEEE
Confidence                       1235688999999999877643

Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.

>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes

Probab=99.33  E-value=6.4e-11  Score=100.37  Aligned_cols=153  Identities=17%  Similarity=0.198  Sum_probs=112.7

Q ss_pred             HHHHHcccCCCCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCC-----------------C--
Q 019861          166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES-----------------N--  226 (334)
Q Consensus       166 ~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~-----------------~--  226 (334)
                      .+.+.++++.. +.+|||||||+|....++++..|.....-.|+++..+...+.......                 +  
T Consensus        15 l~vL~~~l~~~-~~~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~~w~~~   93 (204)
T PF06080_consen   15 LEVLKQYLPDS-GTRVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSAPPWPWE   93 (204)
T ss_pred             HHHHHHHhCcc-CceEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCCCCCccc
Confidence            45666666552 225999999999999999999998888889999887654444322211                 1  


Q ss_pred             ----CCCCCceEEEeCccccCCCC--HHHHHHHHHHcccCCcEEEEEEeccCCCCCchHHHHHHHHHhhhhcCccCCCCH
Q 019861          227 ----FPKDSIDAVHAGAAIHCWSS--PSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSE  300 (334)
Q Consensus       227 ----~~~~~fD~V~~~~vl~h~~d--~~~~L~~i~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~  300 (334)
                          +..++||+|++.+++|-++-  -..+++.+.++|++||.|++.-|.........+.-..+..........+-+.+.
T Consensus        94 ~~~~~~~~~~D~i~~~N~lHI~p~~~~~~lf~~a~~~L~~gG~L~~YGPF~~~G~~ts~SN~~FD~sLr~rdp~~GiRD~  173 (204)
T PF06080_consen   94 LPAPLSPESFDAIFCINMLHISPWSAVEGLFAGAARLLKPGGLLFLYGPFNRDGKFTSESNAAFDASLRSRDPEWGIRDI  173 (204)
T ss_pred             cccccCCCCcceeeehhHHHhcCHHHHHHHHHHHHHhCCCCCEEEEeCCcccCCEeCCcHHHHHHHHHhcCCCCcCccCH
Confidence                12458999999999998873  358899999999999999999887754433334344444444443446678899


Q ss_pred             HHHHHHHHhCCCcEEEEee
Q 019861          301 REIEDLCRACGLVDFKCTR  319 (334)
Q Consensus       301 ~~l~~ll~~~Gf~~v~~~~  319 (334)
                      +++.++.+++||+..+.+.
T Consensus       174 e~v~~lA~~~GL~l~~~~~  192 (204)
T PF06080_consen  174 EDVEALAAAHGLELEEDID  192 (204)
T ss_pred             HHHHHHHHHCCCccCcccc
Confidence            9999999999998877553

The function of this family is unknown.

>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional

Probab=99.31  E-value=2.6e-11  Score=112.93  Aligned_cols=103  Identities=18%  Similarity=0.243  Sum_probs=80.4

Q ss_pred             HHcccCCCCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCC----------------CCCCCCc
Q 019861          169 MKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES----------------NFPKDSI  232 (334)
Q Consensus       169 l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~----------------~~~~~~f  232 (334)
                      +...+....+..+||||||+|.++..++...|...++|+|+++.+++.+.++.....                .++++++
T Consensus       114 ~~~~~~~~~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~gL~NV~~i~~DA~~ll~~~~~~s~  193 (390)
T PRK14121        114 FLDFISKNQEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLNLKNLLIINYDARLLLELLPSNSV  193 (390)
T ss_pred             HHHHhcCCCCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHhhhhCCCCce
Confidence            344444455679999999999999999999988899999999999999987754321                3678899


Q ss_pred             eEEEeCccccCCCCH------HHHHHHHHHcccCCcEEEEEEecc
Q 019861          233 DAVHAGAAIHCWSSP------STGVAEISRVLRPGGVFVGTTYIV  271 (334)
Q Consensus       233 D~V~~~~vl~h~~d~------~~~L~~i~r~LkpgG~lii~~~~~  271 (334)
                      |.|++.+...+...+      ..+|++++|+|+|||.+.+.+-..
T Consensus       194 D~I~lnFPdPW~KkrHRRlv~~~fL~e~~RvLkpGG~l~l~TD~~  238 (390)
T PRK14121        194 EKIFVHFPVPWDKKPHRRVISEDFLNEALRVLKPGGTLELRTDSE  238 (390)
T ss_pred             eEEEEeCCCCccccchhhccHHHHHHHHHHHcCCCcEEEEEEECH
Confidence            999975432221111      579999999999999999977654

>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases

Probab=99.31  E-value=1.3e-11  Score=103.55  Aligned_cols=104  Identities=24%  Similarity=0.384  Sum_probs=80.2

Q ss_pred             HHHHcccCCCCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCC-------------CCCCCCce
Q 019861          167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES-------------NFPKDSID  233 (334)
Q Consensus       167 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~-------------~~~~~~fD  233 (334)
                      +.+.+.+...+..+|||+|||+|..+..++..++..+++++|+++.+++.+++++....             ..++++||
T Consensus        21 ~lL~~~l~~~~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~n~~~~v~~~~~d~~~~~~~~~fD  100 (170)
T PF05175_consen   21 RLLLDNLPKHKGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAERNGLENVEVVQSDLFEALPDGKFD  100 (170)
T ss_dssp             HHHHHHHHHHTTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHHTTCTTEEEEESSTTTTCCTTCEE
T ss_pred             HHHHHHHhhccCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCcccccccccccccccccccee
Confidence            34455554446789999999999999999999987779999999999999998766432             34468999


Q ss_pred             EEEeCccccCCCC-----HHHHHHHHHHcccCCcEEEEEEec
Q 019861          234 AVHAGAAIHCWSS-----PSTGVAEISRVLRPGGVFVGTTYI  270 (334)
Q Consensus       234 ~V~~~~vl~h~~d-----~~~~L~~i~r~LkpgG~lii~~~~  270 (334)
                      +|+++-=++.-.+     ...++++..++|+|||.+++....
T Consensus       101 ~Iv~NPP~~~~~~~~~~~~~~~i~~a~~~Lk~~G~l~lv~~~  142 (170)
T PF05175_consen  101 LIVSNPPFHAGGDDGLDLLRDFIEQARRYLKPGGRLFLVINS  142 (170)
T ss_dssp             EEEE---SBTTSHCHHHHHHHHHHHHHHHEEEEEEEEEEEET
T ss_pred             EEEEccchhcccccchhhHHHHHHHHHHhccCCCEEEEEeec
Confidence            9999865443333     357899999999999999875553

; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....

>TIGR03438 probable methyltransferase

Probab=99.30  E-value=1.2e-10  Score=106.76  Aligned_cols=93  Identities=18%  Similarity=0.271  Sum_probs=70.2

Q ss_pred             CCCcEEEECCCcCHHHHHHHHcCC-CCeEEEEeCCHHHHHHHHHHHhcCC----------------CCCCC----CceEE
Q 019861          177 LGGNIIDASCGSGLFSRIFAKSGL-FSLVVALDYSENMLKQCYEFVQQES----------------NFPKD----SIDAV  235 (334)
Q Consensus       177 ~~~~vLDiGcG~G~~~~~l~~~~~-~~~v~giD~s~~~~~~a~~~~~~~~----------------~~~~~----~fD~V  235 (334)
                      ++.+|||+|||+|..+..+.+... ..+|+|+|+|+.|++.+++++....                +++..    ...++
T Consensus        63 ~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~~~~~~~~~~~~~~~  142 (301)
T TIGR03438        63 AGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGICADFTQPLALPPEPAAGRRLGF  142 (301)
T ss_pred             CCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccchhhhhcccccCCeEEE
Confidence            367999999999999999988854 3589999999999999988754321                11111    23345


Q ss_pred             EeCccccCCCC--HHHHHHHHHHcccCCcEEEEEEe
Q 019861          236 HAGAAIHCWSS--PSTGVAEISRVLRPGGVFVGTTY  269 (334)
Q Consensus       236 ~~~~vl~h~~d--~~~~L~~i~r~LkpgG~lii~~~  269 (334)
                      ++...+.|++.  ...+|++++++|+|||.+++...
T Consensus       143 ~~gs~~~~~~~~e~~~~L~~i~~~L~pgG~~lig~d  178 (301)
T TIGR03438       143 FPGSTIGNFTPEEAVAFLRRIRQLLGPGGGLLIGVD  178 (301)
T ss_pred             EecccccCCCHHHHHHHHHHHHHhcCCCCEEEEecc
Confidence            55567888763  35789999999999999997554

This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases

>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=99.28  E-value=6.1e-11  Score=105.26  Aligned_cols=136  Identities=20%  Similarity=0.260  Sum_probs=97.5

Q ss_pred             HHHcccCCCCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhc--------CCCCCCCCceEEEeCc
Q 019861          168 LMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQ--------ESNFPKDSIDAVHAGA  239 (334)
Q Consensus       168 ~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~--------~~~~~~~~fD~V~~~~  239 (334)
                      .+.......+..+|||||+|.|.++..+++++|..+++.+|. +..++.+++ ...        ..++|.  +|+|++.+
T Consensus        91 ~~~~~~d~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~~~~-~~rv~~~~gd~f~~~P~--~D~~~l~~  166 (241)
T PF00891_consen   91 ILLEAFDFSGFKTVVDVGGGSGHFAIALARAYPNLRATVFDL-PEVIEQAKE-ADRVEFVPGDFFDPLPV--ADVYLLRH  166 (241)
T ss_dssp             HHHHHSTTTTSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE--HHHHCCHHH-TTTEEEEES-TTTCCSS--ESEEEEES
T ss_pred             hhhccccccCccEEEeccCcchHHHHHHHHHCCCCcceeecc-Hhhhhcccc-ccccccccccHHhhhcc--ccceeeeh
Confidence            344444555567999999999999999999999999999998 888888887 111        024455  99999999


Q ss_pred             cccCCCCHH--HHHHHHHHcccCC--cEEEEEEeccCCCCCchHHH---HHHHHHhhhhcCccCCCCHHHHHHHHH
Q 019861          240 AIHCWSSPS--TGVAEISRVLRPG--GVFVGTTYIVDGPFNLIPFS---RLLRQNMMQISGSYTFLSEREIEDLCR  308 (334)
Q Consensus       240 vl~h~~d~~--~~L~~i~r~Lkpg--G~lii~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~t~~~l~~ll~  308 (334)
                      +||+++|..  .+|+++++.|+||  |+|+|.+...+.........   ..+.-.+....+ ...+|.++|++||+
T Consensus       167 vLh~~~d~~~~~iL~~~~~al~pg~~g~llI~e~~~~~~~~~~~~~~~~~~~dl~ml~~~~-G~~rt~~e~~~ll~  241 (241)
T PF00891_consen  167 VLHDWSDEDCVKILRNAAAALKPGKDGRLLIIEMVLPDDRTGPPSAEMDALFDLNMLVLTG-GKERTEEEWEALLK  241 (241)
T ss_dssp             SGGGS-HHHHHHHHHHHHHHSEECTTEEEEEEEEEECSSSSSHHHHHHHHHHHHHHHHHHS-SS-EEHHHHHHHHH
T ss_pred             hhhhcchHHHHHHHHHHHHHhCCCCCCeEEEEeeccCCCCCCchHHHHHHHHHHHHHHhcC-CCCcCHHHHHHHhC
Confidence            999999764  7899999999999  99999999876543333322   122222222222 56679999999874

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....

>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=99.28  E-value=4.6e-11  Score=103.87  Aligned_cols=97  Identities=18%  Similarity=0.216  Sum_probs=76.2

Q ss_pred             HHHHHcccCCCCCCcEEEECCCcCHHHHHHHHc-CCCCeEEEEeCCHHHHHHHHHHHhcCC--------------CCCCC
Q 019861          166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQQES--------------NFPKD  230 (334)
Q Consensus       166 ~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~~v~giD~s~~~~~~a~~~~~~~~--------------~~~~~  230 (334)
                      ...+.+.+...++.+|||||||+|.++..+++. +...+|+++|+++.+++.+++++....              ..+.+
T Consensus        65 ~~~~~~~l~~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~~v~~~~gd~~~~~~~~~  144 (212)
T PRK13942         65 VAIMCELLDLKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYDNVEVIVGDGTLGYEENA  144 (212)
T ss_pred             HHHHHHHcCCCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCCCcCC
Confidence            345556666777899999999999999888876 344699999999999999998865321              12457


Q ss_pred             CceEEEeCccccCCCCHHHHHHHHHHcccCCcEEEEEE
Q 019861          231 SIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTT  268 (334)
Q Consensus       231 ~fD~V~~~~vl~h~~d~~~~L~~i~r~LkpgG~lii~~  268 (334)
                      .||+|++...+++++      ..+.+.|+|||++++..
T Consensus       145 ~fD~I~~~~~~~~~~------~~l~~~LkpgG~lvi~~  176 (212)
T PRK13942        145 PYDRIYVTAAGPDIP------KPLIEQLKDGGIMVIPV  176 (212)
T ss_pred             CcCEEEECCCcccch------HHHHHhhCCCcEEEEEE
Confidence            899999988776653      45777899999988854

>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional

Probab=99.28  E-value=8.3e-11  Score=101.94  Aligned_cols=95  Identities=19%  Similarity=0.158  Sum_probs=68.2

Q ss_pred             CCCCcEEEECCCcCHHHHHHHHcC-CCCeEEEEeCCHHHHHHHHHH-HhcC-----------CCCCCCCceEEEeCcccc
Q 019861          176 VLGGNIIDASCGSGLFSRIFAKSG-LFSLVVALDYSENMLKQCYEF-VQQE-----------SNFPKDSIDAVHAGAAIH  242 (334)
Q Consensus       176 ~~~~~vLDiGcG~G~~~~~l~~~~-~~~~v~giD~s~~~~~~a~~~-~~~~-----------~~~~~~~fD~V~~~~vl~  242 (334)
                      .++.+|||+|||+|.++..+++.. +...|+|+|+++. .....-. +..+           .++.+++||+|++..+.+
T Consensus        50 ~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~~-~~~~~v~~i~~D~~~~~~~~~i~~~~~~~~~D~V~S~~~~~  128 (209)
T PRK11188         50 KPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILPM-DPIVGVDFLQGDFRDELVLKALLERVGDSKVQVVMSDMAPN  128 (209)
T ss_pred             CCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEecccc-cCCCCcEEEecCCCChHHHHHHHHHhCCCCCCEEecCCCCc
Confidence            457899999999999999888874 4469999999871 1000000 0000           024567899999988776


Q ss_pred             CCCCH-----------HHHHHHHHHcccCCcEEEEEEecc
Q 019861          243 CWSSP-----------STGVAEISRVLRPGGVFVGTTYIV  271 (334)
Q Consensus       243 h~~d~-----------~~~L~~i~r~LkpgG~lii~~~~~  271 (334)
                      +..++           ..+|+++.++|+|||.+++.++..
T Consensus       129 ~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~~~  168 (209)
T PRK11188        129 MSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVFQG  168 (209)
T ss_pred             cCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEecC
Confidence            65543           358999999999999999977654

>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase

Probab=99.27  E-value=3.6e-11  Score=103.14  Aligned_cols=94  Identities=18%  Similarity=0.160  Sum_probs=74.7

Q ss_pred             CCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCC-----------------CCCCCCceEEEeCcc
Q 019861          178 GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES-----------------NFPKDSIDAVHAGAA  240 (334)
Q Consensus       178 ~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~-----------------~~~~~~fD~V~~~~v  240 (334)
                      ..+|||||||+|.++..++...+..+++|+|+++.+++.|+++.....                 .++++++|.|++...
T Consensus        17 ~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~l~ni~~i~~d~~~~~~~~~~~~~~d~v~~~~p   96 (194)
T TIGR00091        17 APLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLGLKNLHVLCGDANELLDKFFPDGSLSKVFLNFP   96 (194)
T ss_pred             CceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhCCCCEEEEccCHHHHHHhhCCCCceeEEEEECC
Confidence            569999999999999999999888899999999999999987654321                 134568999988754


Q ss_pred             ccCCCCH--------HHHHHHHHHcccCCcEEEEEEecc
Q 019861          241 IHCWSSP--------STGVAEISRVLRPGGVFVGTTYIV  271 (334)
Q Consensus       241 l~h~~d~--------~~~L~~i~r~LkpgG~lii~~~~~  271 (334)
                      ..+....        ..+++++.++|||||.+++.+...
T Consensus        97 dpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~td~~  135 (194)
T TIGR00091        97 DPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKTDNE  135 (194)
T ss_pred             CcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEeCCH
Confidence            3322211        468999999999999999987654

In E. coli, this protein flanks the DNA repair protein MutY, also called micA.

>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]

Probab=99.27  E-value=2.4e-11  Score=102.39  Aligned_cols=92  Identities=27%  Similarity=0.390  Sum_probs=75.4

Q ss_pred             CCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHH-HhcC---------CCCCCCCceEEEeCccccCCC-
Q 019861          177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEF-VQQE---------SNFPKDSIDAVHAGAAIHCWS-  245 (334)
Q Consensus       177 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~-~~~~---------~~~~~~~fD~V~~~~vl~h~~-  245 (334)
                      .+.-|||||||+|..+..+.+.|.  .++|+|+|+.|++.|.+. ++.+         .||+.++||.+|+..++.++- 
T Consensus        50 ~~~~iLDIGCGsGLSg~vL~~~Gh--~wiGvDiSpsML~~a~~~e~egdlil~DMG~GlpfrpGtFDg~ISISAvQWLcn  127 (270)
T KOG1541|consen   50 KSGLILDIGCGSGLSGSVLSDSGH--QWIGVDISPSMLEQAVERELEGDLILCDMGEGLPFRPGTFDGVISISAVQWLCN  127 (270)
T ss_pred             CCcEEEEeccCCCcchheeccCCc--eEEeecCCHHHHHHHHHhhhhcCeeeeecCCCCCCCCCccceEEEeeeeeeecc
Confidence            467899999999999999999987  999999999999999953 3322         379999999999977665542 


Q ss_pred             ------CHH----HHHHHHHHcccCCcEEEEEEec
Q 019861          246 ------SPS----TGVAEISRVLRPGGVFVGTTYI  270 (334)
Q Consensus       246 ------d~~----~~L~~i~r~LkpgG~lii~~~~  270 (334)
                            +|.    .++..++.+|++|++.++...-
T Consensus       128 A~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~QfYp  162 (270)
T KOG1541|consen  128 ADKSLHVPKKRLLRFFGTLYSCLKRGARAVLQFYP  162 (270)
T ss_pred             cCccccChHHHHHHHhhhhhhhhccCceeEEEecc
Confidence                  343    5788899999999999986543

>PRK07402 precorrin-6B methylase; Provisional

Probab=99.27  E-value=1.2e-10  Score=100.05  Aligned_cols=101  Identities=16%  Similarity=0.111  Sum_probs=76.3

Q ss_pred             HHHHHcccCCCCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCC---------CC----C--CC
Q 019861          166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES---------NF----P--KD  230 (334)
Q Consensus       166 ~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~---------~~----~--~~  230 (334)
                      ...+...+...++.+|||+|||+|.++..++...+..+++++|+++.+++.+++++....         ..    +  ..
T Consensus        29 ~~~l~~~l~~~~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~  108 (196)
T PRK07402         29 RLLLISQLRLEPDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFGVKNVEVIEGSAPECLAQLAP  108 (196)
T ss_pred             HHHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCeEEEECchHHHHhhCCC
Confidence            345666777667889999999999999999877666799999999999999998764321         00    0  12


Q ss_pred             CceEEEeCccccCCCCHHHHHHHHHHcccCCcEEEEEEec
Q 019861          231 SIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYI  270 (334)
Q Consensus       231 ~fD~V~~~~vl~h~~d~~~~L~~i~r~LkpgG~lii~~~~  270 (334)
                      .+|.|+...    ..+...+++++.++|+|||++++..++
T Consensus       109 ~~d~v~~~~----~~~~~~~l~~~~~~LkpgG~li~~~~~  144 (196)
T PRK07402        109 APDRVCIEG----GRPIKEILQAVWQYLKPGGRLVATASS  144 (196)
T ss_pred             CCCEEEEEC----CcCHHHHHHHHHHhcCCCeEEEEEeec
Confidence            346655432    235578999999999999999998765

>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific

Probab=99.26  E-value=3.5e-10  Score=102.67  Aligned_cols=117  Identities=19%  Similarity=0.141  Sum_probs=86.4

Q ss_pred             CCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCC--------------CCCCCCceEEEeC---
Q 019861          176 VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES--------------NFPKDSIDAVHAG---  238 (334)
Q Consensus       176 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~--------------~~~~~~fD~V~~~---  238 (334)
                      .++.+|||+|||+|.++..++...+..+++|+|+|+.+++.|+++.....              .+++++||+|+++   
T Consensus       120 ~~~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~~~~~~~fD~Iv~NPPy  199 (284)
T TIGR03533       120 EPVKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFAALPGRKYDLIVSNPPY  199 (284)
T ss_pred             CCCCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhccCCCCccEEEECCCC
Confidence            34578999999999999999998777799999999999999998765321              2345689999986   


Q ss_pred             ---ccccCC-----CCH--------------HHHHHHHHHcccCCcEEEEEEeccCCCCCchHHHHHHHHHhhhhcCccC
Q 019861          239 ---AAIHCW-----SSP--------------STGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYT  296 (334)
Q Consensus       239 ---~vl~h~-----~d~--------------~~~L~~i~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  296 (334)
                         ..+.++     .+|              ..+++++.++|+|||++++....                          
T Consensus       200 ~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e~g~--------------------------  253 (284)
T TIGR03533       200 VDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVEVGN--------------------------  253 (284)
T ss_pred             CCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECc--------------------------
Confidence               111111     122              45688899999999999885542                          


Q ss_pred             CCCHHHHHHHHHhCCCcEEEEeec
Q 019861          297 FLSEREIEDLCRACGLVDFKCTRN  320 (334)
Q Consensus       297 ~~t~~~l~~ll~~~Gf~~v~~~~~  320 (334)
                        +.+.+.+++...||.-......
T Consensus       254 --~~~~v~~~~~~~~~~~~~~~~~  275 (284)
T TIGR03533       254 --SMEALEEAYPDVPFTWLEFENG  275 (284)
T ss_pred             --CHHHHHHHHHhCCCceeeecCC
Confidence              2346788888888866554433

Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.

>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=99.26  E-value=2.5e-10  Score=103.22  Aligned_cols=127  Identities=20%  Similarity=0.185  Sum_probs=91.6

Q ss_pred             HHHHHHHcccCCCCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHh-cCC------------CCCCC
Q 019861          164 KEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQ-QES------------NFPKD  230 (334)
Q Consensus       164 ~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~-~~~------------~~~~~  230 (334)
                      .+.+.+.......++.+|||+|||+|.++..++...+..+++|+|+++.+++.++++.. ...            +++++
T Consensus        95 ~l~~~~~~~~~~~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~~~~~~~i~~~~~d~~~~~~~~  174 (275)
T PRK09328         95 ELVEWALEALLLKEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAKHGLGARVEFLQGDWFEPLPGG  174 (275)
T ss_pred             HHHHHHHHhccccCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhCCCCcEEEEEccccCcCCCC
Confidence            34444444444456789999999999999999998877799999999999999998865 110            22346


Q ss_pred             CceEEEeCcc------cc--------CC------------CCHHHHHHHHHHcccCCcEEEEEEeccCCCCCchHHHHHH
Q 019861          231 SIDAVHAGAA------IH--------CW------------SSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLL  284 (334)
Q Consensus       231 ~fD~V~~~~v------l~--------h~------------~d~~~~L~~i~r~LkpgG~lii~~~~~~~~~~~~~~~~~~  284 (334)
                      +||+|+++--      ++        |-            .....+++++.++|+|||++++....              
T Consensus       175 ~fD~Iv~npPy~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e~g~--------------  240 (275)
T PRK09328        175 RFDLIVSNPPYIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLEIGY--------------  240 (275)
T ss_pred             ceeEEEECCCcCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEEECc--------------
Confidence            8999998521      11        11            11246788888999999999984311              


Q ss_pred             HHHhhhhcCccCCCCHHHHHHHHHhCCCcEEEE
Q 019861          285 RQNMMQISGSYTFLSEREIEDLCRACGLVDFKC  317 (334)
Q Consensus       285 ~~~~~~~~~~~~~~t~~~l~~ll~~~Gf~~v~~  317 (334)
                                   ...+.+.+++++.||..++.
T Consensus       241 -------------~~~~~~~~~l~~~gf~~v~~  260 (275)
T PRK09328        241 -------------DQGEAVRALLAAAGFADVET  260 (275)
T ss_pred             -------------hHHHHHHHHHHhCCCceeEE
Confidence                         12456889999999987664

>TIGR00536 hemK_fam HemK family putative methylases

Probab=99.25  E-value=3.3e-10  Score=103.00  Aligned_cols=112  Identities=19%  Similarity=0.200  Sum_probs=84.5

Q ss_pred             CcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCC--------------CCCCCCceEEEeC------
Q 019861          179 GNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES--------------NFPKDSIDAVHAG------  238 (334)
Q Consensus       179 ~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~--------------~~~~~~fD~V~~~------  238 (334)
                      .+|||+|||+|.++..++...+..+++|+|+|+.+++.|+++.....              ++++++||+|+++      
T Consensus       116 ~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~~~~~~~~fDlIvsNPPyi~~  195 (284)
T TIGR00536       116 LHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLFEPLAGQKIDIIVSNPPYIDE  195 (284)
T ss_pred             CEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhccCcCCCccEEEECCCCCCc
Confidence            68999999999999999998777799999999999999998765321              2334489999986      


Q ss_pred             -------ccccCCC------------CHHHHHHHHHHcccCCcEEEEEEeccCCCCCchHHHHHHHHHhhhhcCccCCCC
Q 019861          239 -------AAIHCWS------------SPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLS  299 (334)
Q Consensus       239 -------~vl~h~~------------d~~~~L~~i~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t  299 (334)
                             .++.|-+            ....+++++.++|+|||++++.....                           .
T Consensus       196 ~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e~g~~---------------------------q  248 (284)
T TIGR00536       196 EDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCEIGNW---------------------------Q  248 (284)
T ss_pred             chhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEEECcc---------------------------H
Confidence                   2333332            23467889999999999998866532                           2


Q ss_pred             HHHHHHHHH-hCCCcEEEE
Q 019861          300 EREIEDLCR-ACGLVDFKC  317 (334)
Q Consensus       300 ~~~l~~ll~-~~Gf~~v~~  317 (334)
                      .+.+.+++. ..||..++.
T Consensus       249 ~~~~~~~~~~~~~~~~~~~  267 (284)
T TIGR00536       249 QKSLKELLRIKFTWYDVEN  267 (284)
T ss_pred             HHHHHHHHHhcCCCceeEE
Confidence            446777777 468876554

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.

>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase

Probab=99.24  E-value=9.6e-11  Score=102.17  Aligned_cols=96  Identities=19%  Similarity=0.207  Sum_probs=75.4

Q ss_pred             HHHHcccCCCCCCcEEEECCCcCHHHHHHHHcCC-CCeEEEEeCCHHHHHHHHHHHhcCC--------------CCCCCC
Q 019861          167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGL-FSLVVALDYSENMLKQCYEFVQQES--------------NFPKDS  231 (334)
Q Consensus       167 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~-~~~v~giD~s~~~~~~a~~~~~~~~--------------~~~~~~  231 (334)
                      ..+.+.+...++.+|||||||+|.++..+++... ..+|+++|+++.+++.|++++....              .....+
T Consensus        67 ~~~~~~l~~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~~v~~~~~d~~~~~~~~~~  146 (215)
T TIGR00080        67 AMMTELLELKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLDNVIVIVGDGTQGWEPLAP  146 (215)
T ss_pred             HHHHHHhCCCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCeEEEECCcccCCcccCC
Confidence            4555666677789999999999999999988743 3569999999999999998865431              112458


Q ss_pred             ceEEEeCccccCCCCHHHHHHHHHHcccCCcEEEEEE
Q 019861          232 IDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTT  268 (334)
Q Consensus       232 fD~V~~~~vl~h~~d~~~~L~~i~r~LkpgG~lii~~  268 (334)
                      ||+|++.....++      ...+.+.|+|||++++..
T Consensus       147 fD~Ii~~~~~~~~------~~~~~~~L~~gG~lv~~~  177 (215)
T TIGR00080       147 YDRIYVTAAGPKI------PEALIDQLKEGGILVMPV  177 (215)
T ss_pred             CCEEEEcCCcccc------cHHHHHhcCcCcEEEEEE
Confidence            9999998776655      356788999999998854

Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.

>TIGR01177 conserved hypothetical protein TIGR01177

Probab=99.23  E-value=1.8e-10  Score=106.88  Aligned_cols=121  Identities=19%  Similarity=0.190  Sum_probs=89.1

Q ss_pred             HHHHHHcccCCCCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCC--------------CCCCC
Q 019861          165 EFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES--------------NFPKD  230 (334)
Q Consensus       165 ~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~--------------~~~~~  230 (334)
                      +...+.......++.+|||+|||+|.++..++..+.  .++|+|+++.|++.++.++...+              +++++
T Consensus       170 la~~~~~l~~~~~g~~vLDp~cGtG~~lieaa~~~~--~v~g~Di~~~~~~~a~~nl~~~g~~~i~~~~~D~~~l~~~~~  247 (329)
T TIGR01177       170 LARAMVNLARVTEGDRVLDPFCGTGGFLIEAGLMGA--KVIGCDIDWKMVAGARINLEHYGIEDFFVKRGDATKLPLSSE  247 (329)
T ss_pred             HHHHHHHHhCCCCcCEEEECCCCCCHHHHHHHHhCC--eEEEEcCCHHHHHHHHHHHHHhCCCCCeEEecchhcCCcccC
Confidence            344444555556688999999999999888777654  99999999999999988764321              33467


Q ss_pred             CceEEEeCcc------cc-C-CCC-HHHHHHHHHHcccCCcEEEEEEeccCCCCCchHHHHHHHHHhhhhcCccCCCCHH
Q 019861          231 SIDAVHAGAA------IH-C-WSS-PSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSER  301 (334)
Q Consensus       231 ~fD~V~~~~v------l~-h-~~d-~~~~L~~i~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~  301 (334)
                      +||+|++.--      .. + ..+ ...+|+++.++|+|||++++..+..                             .
T Consensus       248 ~~D~Iv~dPPyg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~~~-----------------------------~  298 (329)
T TIGR01177       248 SVDAIATDPPYGRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYAVPTR-----------------------------I  298 (329)
T ss_pred             CCCEEEECCCCcCcccccCCchHHHHHHHHHHHHHHccCCcEEEEEEcCC-----------------------------C
Confidence            8999999521      11 1 111 3689999999999999999877653                             1


Q ss_pred             HHHHHHHhCCCcEEEE
Q 019861          302 EIEDLCRACGLVDFKC  317 (334)
Q Consensus       302 ~l~~ll~~~Gf~~v~~  317 (334)
                      ++.++++++|| ++..
T Consensus       299 ~~~~~~~~~g~-i~~~  313 (329)
T TIGR01177       299 DLESLAEDAFR-VVKR  313 (329)
T ss_pred             CHHHHHhhcCc-chhe
Confidence            45577889999 7663

This family is found exclusively in the Archaea.

>KOG1271 consensus Methyltransferases [General function prediction only]

Probab=99.22  E-value=1.5e-10  Score=94.78  Aligned_cols=113  Identities=20%  Similarity=0.360  Sum_probs=89.0

Q ss_pred             CcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCC---------------CCCCCCceEEEeCccccC
Q 019861          179 GNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES---------------NFPKDSIDAVHAGAAIHC  243 (334)
Q Consensus       179 ~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~---------------~~~~~~fD~V~~~~vl~h  243 (334)
                      .+|||+|||.|.++..|++.+.....+|+|+|+.+++.|+...+...               .+..+.||+|+--..+.-
T Consensus        69 ~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~DI~~~~~~~~qfdlvlDKGT~DA  148 (227)
T KOG1271|consen   69 DRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQNIAERDGFSNEIRFQQLDITDPDFLSGQFDLVLDKGTLDA  148 (227)
T ss_pred             cceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHhcCCCcceeEEEeeccCCcccccceeEEeecCceee
Confidence            49999999999999999999877779999999999999887655332               233567888876554433


Q ss_pred             CC--------CHHHHHHHHHHcccCCcEEEEEEeccCCCCCchHHHHHHHHHhhhhcCccCCCCHHHHHHHHHhCCCcEE
Q 019861          244 WS--------SPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLCRACGLVDF  315 (334)
Q Consensus       244 ~~--------d~~~~L~~i~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~l~~ll~~~Gf~~v  315 (334)
                      +.        .+...+..+.+.|+|||+++|..-|                           ||.+++.+.++..||+..
T Consensus       149 isLs~d~~~~r~~~Y~d~v~~ll~~~gifvItSCN---------------------------~T~dELv~~f~~~~f~~~  201 (227)
T KOG1271|consen  149 ISLSPDGPVGRLVVYLDSVEKLLSPGGIFVITSCN---------------------------FTKDELVEEFENFNFEYL  201 (227)
T ss_pred             eecCCCCcccceeeehhhHhhccCCCcEEEEEecC---------------------------ccHHHHHHHHhcCCeEEE
Confidence            32        1245688899999999999996554                           488899999999999887


Q ss_pred             EEe
Q 019861          316 KCT  318 (334)
Q Consensus       316 ~~~  318 (334)
                      ..+
T Consensus       202 ~tv  204 (227)
T KOG1271|consen  202 STV  204 (227)
T ss_pred             Eee
Confidence            744

>KOG3010 consensus Methyltransferase [General function prediction only]

Probab=99.22  E-value=1.3e-10  Score=99.47  Aligned_cols=89  Identities=27%  Similarity=0.275  Sum_probs=70.8

Q ss_pred             CcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcC-------------CCCC--CCCceEEEeCccccC
Q 019861          179 GNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQE-------------SNFP--KDSIDAVHAGAAIHC  243 (334)
Q Consensus       179 ~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~-------------~~~~--~~~fD~V~~~~vl~h  243 (334)
                      ..++|+|||+|..++.++....  +|+|+|+|+.|++.+++.....             .++.  +++.|+|++...+|+
T Consensus        35 ~~a~DvG~G~Gqa~~~iae~~k--~VIatD~s~~mL~~a~k~~~~~y~~t~~~ms~~~~v~L~g~e~SVDlI~~Aqa~HW  112 (261)
T KOG3010|consen   35 RLAWDVGTGNGQAARGIAEHYK--EVIATDVSEAMLKVAKKHPPVTYCHTPSTMSSDEMVDLLGGEESVDLITAAQAVHW  112 (261)
T ss_pred             ceEEEeccCCCcchHHHHHhhh--hheeecCCHHHHHHhhcCCCcccccCCccccccccccccCCCcceeeehhhhhHHh
Confidence            3899999999988888888765  9999999999999998754321             1222  789999999999887


Q ss_pred             CCCHHHHHHHHHHcccCCcEEEEEEec
Q 019861          244 WSSPSTGVAEISRVLRPGGVFVGTTYI  270 (334)
Q Consensus       244 ~~d~~~~L~~i~r~LkpgG~lii~~~~  270 (334)
                      + |.+.+.++++|+||++|-++.....
T Consensus       113 F-dle~fy~~~~rvLRk~Gg~iavW~Y  138 (261)
T KOG3010|consen  113 F-DLERFYKEAYRVLRKDGGLIAVWNY  138 (261)
T ss_pred             h-chHHHHHHHHHHcCCCCCEEEEEEc
Confidence            6 6678899999999987744443333

>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]

Probab=99.21  E-value=7.6e-10  Score=98.78  Aligned_cols=103  Identities=20%  Similarity=0.356  Sum_probs=84.8

Q ss_pred             HHHHHcccCCCCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCC-------------CCCCCCc
Q 019861          166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES-------------NFPKDSI  232 (334)
Q Consensus       166 ~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~-------------~~~~~~f  232 (334)
                      .+.+++.++...+.+|||+|||.|.++..+++..|..+++-+|.|..+++.+++++....             +. .++|
T Consensus       147 S~lLl~~l~~~~~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~N~~~~~~v~~s~~~~~v-~~kf  225 (300)
T COG2813         147 SRLLLETLPPDLGGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAANGVENTEVWASNLYEPV-EGKF  225 (300)
T ss_pred             HHHHHHhCCccCCCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHHHcCCCccEEEEecccccc-cccc
Confidence            457777787776779999999999999999999999999999999999999999877542             12 2489


Q ss_pred             eEEEeCccccCCCCH-----HHHHHHHHHcccCCcEEEEEEe
Q 019861          233 DAVHAGAAIHCWSSP-----STGVAEISRVLRPGGVFVGTTY  269 (334)
Q Consensus       233 D~V~~~~vl~h~~d~-----~~~L~~i~r~LkpgG~lii~~~  269 (334)
                      |+|+++==+|-=.+.     .+++++..+.|++||.|.+...
T Consensus       226 d~IisNPPfh~G~~v~~~~~~~~i~~A~~~L~~gGeL~iVan  267 (300)
T COG2813         226 DLIISNPPFHAGKAVVHSLAQEIIAAAARHLKPGGELWIVAN  267 (300)
T ss_pred             cEEEeCCCccCCcchhHHHHHHHHHHHHHhhccCCEEEEEEc
Confidence            999998655532222     3789999999999999998766

>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A

Probab=99.21  E-value=1.4e-10  Score=90.87  Aligned_cols=92  Identities=24%  Similarity=0.367  Sum_probs=73.6

Q ss_pred             CCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCC-----------------CCCCCCceEEEeCcc
Q 019861          178 GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES-----------------NFPKDSIDAVHAGAA  240 (334)
Q Consensus       178 ~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~-----------------~~~~~~fD~V~~~~v  240 (334)
                      |.+|||+|||+|.++..+.+.+ ..+++|+|+++..++.++.++....                 .+++++||+|+++--
T Consensus         1 g~~vlD~~~G~G~~~~~~~~~~-~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~D~Iv~npP   79 (117)
T PF13659_consen    1 GDRVLDPGCGSGTFLLAALRRG-AARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEPLPDGKFDLIVTNPP   79 (117)
T ss_dssp             TEEEEEETSTTCHHHHHHHHHC-TCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTCTTT-EEEEEE--S
T ss_pred             CCEEEEcCcchHHHHHHHHHHC-CCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhhccCceeEEEEECCC
Confidence            4689999999999999999998 5699999999999999998766432                 367899999999754


Q ss_pred             ccCCC--------CHHHHHHHHHHcccCCcEEEEEEec
Q 019861          241 IHCWS--------SPSTGVAEISRVLRPGGVFVGTTYI  270 (334)
Q Consensus       241 l~h~~--------d~~~~L~~i~r~LkpgG~lii~~~~  270 (334)
                      .....        ....+++++.++|+|||.+++..++
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~~~~  117 (117)
T PF13659_consen   80 YGPRSGDKAALRRLYSRFLEAAARLLKPGGVLVFITPA  117 (117)
T ss_dssp             TTSBTT----GGCHHHHHHHHHHHHEEEEEEEEEEEEG
T ss_pred             CccccccchhhHHHHHHHHHHHHHHcCCCeEEEEEeCC
Confidence            43211        1257899999999999999998764

...

>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases

Probab=99.20  E-value=1.3e-10  Score=98.09  Aligned_cols=160  Identities=19%  Similarity=0.227  Sum_probs=96.9

Q ss_pred             chhHHHHHHhHHHhhHhcCCCCcHHHHHHHHcccCCCC-CCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHH
Q 019861          140 PFMSFIYERGWRQNFVWGGFPGPEKEFELMKGYLKPVL-GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCY  218 (334)
Q Consensus       140 ~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~l~~~~-~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~  218 (334)
                      +-+-..|+.++++....   | |..-.+.+.+++...+ ...|.|+|||.+.++..+... .  .|.-+|+-+..-....
T Consensus        38 P~~F~~YH~Gfr~Qv~~---W-P~nPvd~iI~~l~~~~~~~viaD~GCGdA~la~~~~~~-~--~V~SfDLva~n~~Vta  110 (219)
T PF05148_consen   38 PELFDIYHEGFRQQVKK---W-PVNPVDVIIEWLKKRPKSLVIADFGCGDAKLAKAVPNK-H--KVHSFDLVAPNPRVTA  110 (219)
T ss_dssp             HHHHHHHHHHHHHHHCT---S-SS-HHHHHHHHHCTS-TTS-EEEES-TT-HHHHH--S------EEEEESS-SSTTEEE
T ss_pred             HHHHHHHHHHHHHHHhc---C-CCCcHHHHHHHHHhcCCCEEEEECCCchHHHHHhcccC-c--eEEEeeccCCCCCEEE
Confidence            33445677777755432   1 2333456666665444 468999999999998776532 2  6888887543110000


Q ss_pred             HHHhcCCCCCCCCceEEEeCccccCCCCHHHHHHHHHHcccCCcEEEEEEeccCCCCCchHHHHHHHHHhhhhcCccCCC
Q 019861          219 EFVQQESNFPKDSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFL  298 (334)
Q Consensus       219 ~~~~~~~~~~~~~fD~V~~~~vl~h~~d~~~~L~~i~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  298 (334)
                      -. -...|+++++.|+++++-+|.- .|...+|.|..|+|||||.|.|.+...                        ++-
T Consensus       111 cd-ia~vPL~~~svDv~VfcLSLMG-Tn~~~fi~EA~RvLK~~G~L~IAEV~S------------------------Rf~  164 (219)
T PF05148_consen  111 CD-IANVPLEDESVDVAVFCLSLMG-TNWPDFIREANRVLKPGGILKIAEVKS------------------------RFE  164 (219)
T ss_dssp             S--TTS-S--TT-EEEEEEES---S-S-HHHHHHHHHHHEEEEEEEEEEEEGG------------------------G-S
T ss_pred             ec-CccCcCCCCceeEEEEEhhhhC-CCcHHHHHHHHheeccCcEEEEEEecc------------------------cCc
Confidence            00 1334788999999999988775 488899999999999999999988753                        233


Q ss_pred             CHHHHHHHHHhCCCcEEEE-eecCcEEEEEEEcCC
Q 019861          299 SEREIEDLCRACGLVDFKC-TRNRGFVMFTATKPS  332 (334)
Q Consensus       299 t~~~l~~ll~~~Gf~~v~~-~~~g~~~~~~a~K~~  332 (334)
                      +.+.+.+.++..||+.... ..+..|.++..+|..
T Consensus       165 ~~~~F~~~~~~~GF~~~~~d~~n~~F~~f~F~K~~  199 (219)
T PF05148_consen  165 NVKQFIKALKKLGFKLKSKDESNKHFVLFEFKKIR  199 (219)
T ss_dssp             -HHHHHHHHHCTTEEEEEEE--STTEEEEEEEE-S
T ss_pred             CHHHHHHHHHHCCCeEEecccCCCeEEEEEEEEcC
Confidence            6788999999999998874 456678888888754

; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.

>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed

Probab=99.19  E-value=2.7e-10  Score=99.09  Aligned_cols=96  Identities=17%  Similarity=0.210  Sum_probs=76.1

Q ss_pred             HHHHHcccCCCCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCC-------------CC-CCCC
Q 019861          166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES-------------NF-PKDS  231 (334)
Q Consensus       166 ~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~-------------~~-~~~~  231 (334)
                      ...+...+...++.+|||+|||+|.++..++....  +++++|+++.+++.+++++....             .+ +.++
T Consensus        67 ~~~l~~~l~~~~~~~VLeiG~GsG~~t~~la~~~~--~v~~vd~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~  144 (212)
T PRK00312         67 VARMTELLELKPGDRVLEIGTGSGYQAAVLAHLVR--RVFSVERIKTLQWEAKRRLKQLGLHNVSVRHGDGWKGWPAYAP  144 (212)
T ss_pred             HHHHHHhcCCCCCCEEEEECCCccHHHHHHHHHhC--EEEEEeCCHHHHHHHHHHHHHCCCCceEEEECCcccCCCcCCC
Confidence            34555666777789999999999999988887754  89999999999999998765321             11 2378


Q ss_pred             ceEEEeCccccCCCCHHHHHHHHHHcccCCcEEEEEEe
Q 019861          232 IDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTY  269 (334)
Q Consensus       232 fD~V~~~~vl~h~~d~~~~L~~i~r~LkpgG~lii~~~  269 (334)
                      ||+|++...++++      .+.+.+.|+|||++++...
T Consensus       145 fD~I~~~~~~~~~------~~~l~~~L~~gG~lv~~~~  176 (212)
T PRK00312        145 FDRILVTAAAPEI------PRALLEQLKEGGILVAPVG  176 (212)
T ss_pred             cCEEEEccCchhh------hHHHHHhcCCCcEEEEEEc
Confidence            9999998877665      3567889999999998765

>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=99.18  E-value=1.1e-09  Score=100.48  Aligned_cols=125  Identities=19%  Similarity=0.134  Sum_probs=88.7

Q ss_pred             CCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCC--------------CCCCCCceEEEeCc----
Q 019861          178 GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES--------------NFPKDSIDAVHAGA----  239 (334)
Q Consensus       178 ~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~--------------~~~~~~fD~V~~~~----  239 (334)
                      ..+|||+|||+|.++..++...+..+++|+|+|+.+++.|+++.....              .+++++||+|+++-    
T Consensus       134 ~~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~l~~~~fDlIvsNPPyi~  213 (307)
T PRK11805        134 VTRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIERHGLEDRVTLIESDLFAALPGRRYDLIVSNPPYVD  213 (307)
T ss_pred             CCEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhhhCCCCCccEEEECCCCCC
Confidence            368999999999999999998777899999999999999998865321              23456899999861    


Q ss_pred             --c-------ccCCCC------------HHHHHHHHHHcccCCcEEEEEEeccCCCCCchHHHHHHHHHhhhhcCccCCC
Q 019861          240 --A-------IHCWSS------------PSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFL  298 (334)
Q Consensus       240 --v-------l~h~~d------------~~~~L~~i~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  298 (334)
                        .       ++|-+.            ...+++++.++|+|||.+++....                            
T Consensus       214 ~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E~g~----------------------------  265 (307)
T PRK11805        214 AEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVEVGN----------------------------  265 (307)
T ss_pred             ccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEEECc----------------------------
Confidence              1       122221            146789999999999999985432                            


Q ss_pred             CHHHHHHHHHhCCCcEEEEeecCcEEEEEEEcC
Q 019861          299 SEREIEDLCRACGLVDFKCTRNRGFVMFTATKP  331 (334)
Q Consensus       299 t~~~l~~ll~~~Gf~~v~~~~~g~~~~~~a~K~  331 (334)
                      +.+.+.+++...||.-...... ...++.+.+.
T Consensus       266 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~  297 (307)
T PRK11805        266 SRVHLEEAYPDVPFTWLEFENG-GDGVFLLTRE  297 (307)
T ss_pred             CHHHHHHHHhhCCCEEEEecCC-CceEEEEEHH
Confidence            1235667777778765544433 3445555443

>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]

Probab=99.18  E-value=3.5e-10  Score=98.07  Aligned_cols=103  Identities=24%  Similarity=0.365  Sum_probs=87.8

Q ss_pred             HHHHHHHcccCCCCCCcEEEECCCcCHHHHHHHHc-CCCCeEEEEeCCHHHHHHHHHHHhcCC--------------CCC
Q 019861          164 KEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQQES--------------NFP  228 (334)
Q Consensus       164 ~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~~v~giD~s~~~~~~a~~~~~~~~--------------~~~  228 (334)
                      +-..+|..+++..++.+|||.|.|+|.++..|+.. ++.++++.+|+.++..+.|++++....              ...
T Consensus        81 KD~~~I~~~~gi~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~~~~~  160 (256)
T COG2519          81 KDAGYIVARLGISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVTLKLGDVREGID  160 (256)
T ss_pred             CCHHHHHHHcCCCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccccceEEEecccccccc
Confidence            33457888888999999999999999999999964 777899999999999999999987532              122


Q ss_pred             CCCceEEEeCccccCCCCHHHHHHHHHHcccCCcEEEEEEecc
Q 019861          229 KDSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIV  271 (334)
Q Consensus       229 ~~~fD~V~~~~vl~h~~d~~~~L~~i~r~LkpgG~lii~~~~~  271 (334)
                      .+.||+|+..     +++|..+|..++++|+|||.+++..|+.
T Consensus       161 ~~~vDav~LD-----mp~PW~~le~~~~~Lkpgg~~~~y~P~v  198 (256)
T COG2519         161 EEDVDAVFLD-----LPDPWNVLEHVSDALKPGGVVVVYSPTV  198 (256)
T ss_pred             ccccCEEEEc-----CCChHHHHHHHHHHhCCCcEEEEEcCCH
Confidence            3489998875     6999999999999999999999988875

>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes

Probab=99.17  E-value=2.2e-10  Score=99.87  Aligned_cols=93  Identities=17%  Similarity=0.140  Sum_probs=76.8

Q ss_pred             CCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhc-----CCCCCCCCceEEEeCccccCCCCHHHHH
Q 019861          177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQ-----ESNFPKDSIDAVHAGAAIHCWSSPSTGV  251 (334)
Q Consensus       177 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~-----~~~~~~~~fD~V~~~~vl~h~~d~~~~L  251 (334)
                      ...++||||+|.|..+..++....  +|++.|.|+.|....+++--.     +..-.+.+||+|.|.++|..-.+|..+|
T Consensus        94 ~~~~lLDlGAGdG~VT~~l~~~f~--~v~aTE~S~~Mr~rL~~kg~~vl~~~~w~~~~~~fDvIscLNvLDRc~~P~~LL  171 (265)
T PF05219_consen   94 KDKSLLDLGAGDGEVTERLAPLFK--EVYATEASPPMRWRLSKKGFTVLDIDDWQQTDFKFDVISCLNVLDRCDRPLTLL  171 (265)
T ss_pred             cCCceEEecCCCcHHHHHHHhhcc--eEEeecCCHHHHHHHHhCCCeEEehhhhhccCCceEEEeehhhhhccCCHHHHH
Confidence            456899999999999999998866  999999999998777653100     0111246899999999999999999999


Q ss_pred             HHHHHcccCCcEEEEEEecc
Q 019861          252 AEISRVLRPGGVFVGTTYIV  271 (334)
Q Consensus       252 ~~i~r~LkpgG~lii~~~~~  271 (334)
                      ++|++.|+|+|++++.....
T Consensus       172 ~~i~~~l~p~G~lilAvVlP  191 (265)
T PF05219_consen  172 RDIRRALKPNGRLILAVVLP  191 (265)
T ss_pred             HHHHHHhCCCCEEEEEEEec
Confidence            99999999999998866543

The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.

>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like

Probab=99.17  E-value=2.1e-10  Score=97.74  Aligned_cols=130  Identities=17%  Similarity=0.223  Sum_probs=93.0

Q ss_pred             CCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCC--------------CCCCCCceEEEeCcccc
Q 019861          177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES--------------NFPKDSIDAVHAGAAIH  242 (334)
Q Consensus       177 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~--------------~~~~~~fD~V~~~~vl~  242 (334)
                      ...+.||.|+|.|..+..+.-.. +.+|..+|+.+..++.|++.+....              ..+.++||+|++.+++-
T Consensus        55 ~~~~alDcGAGIGRVTk~lLl~~-f~~VDlVEp~~~Fl~~a~~~l~~~~~~v~~~~~~gLQ~f~P~~~~YDlIW~QW~lg  133 (218)
T PF05891_consen   55 KFNRALDCGAGIGRVTKGLLLPV-FDEVDLVEPVEKFLEQAKEYLGKDNPRVGEFYCVGLQDFTPEEGKYDLIWIQWCLG  133 (218)
T ss_dssp             --SEEEEET-TTTHHHHHTCCCC--SEEEEEES-HHHHHHHHHHTCCGGCCEEEEEES-GGG----TT-EEEEEEES-GG
T ss_pred             CcceEEecccccchhHHHHHHHh-cCEeEEeccCHHHHHHHHHHhcccCCCcceEEecCHhhccCCCCcEeEEEehHhhc
Confidence            35699999999999998775544 4599999999999999998766521              12247999999999999


Q ss_pred             CCCCH--HHHHHHHHHcccCCcEEEEEEeccCCCCCchHHHHHHHHHhhhhcCccCCCCHHHHHHHHHhCCCcEEEEe
Q 019861          243 CWSSP--STGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLCRACGLVDFKCT  318 (334)
Q Consensus       243 h~~d~--~~~L~~i~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~l~~ll~~~Gf~~v~~~  318 (334)
                      |+.|.  ..+|++++..|+|+|.+++-+........          .+.. ....-..+.+.++++++++|+++++..
T Consensus       134 hLTD~dlv~fL~RCk~~L~~~G~IvvKEN~~~~~~~----------~~D~-~DsSvTRs~~~~~~lF~~AGl~~v~~~  200 (218)
T PF05891_consen  134 HLTDEDLVAFLKRCKQALKPNGVIVVKENVSSSGFD----------EFDE-EDSSVTRSDEHFRELFKQAGLRLVKEE  200 (218)
T ss_dssp             GS-HHHHHHHHHHHHHHEEEEEEEEEEEEEESSSEE----------EEET-TTTEEEEEHHHHHHHHHHCT-EEEEEE
T ss_pred             cCCHHHHHHHHHHHHHhCcCCcEEEEEecCCCCCCc----------ccCC-ccCeeecCHHHHHHHHHHcCCEEEEec
Confidence            99966  58999999999999999998887643210          0001 112223478999999999999998843

; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.

>PHA03411 putative methyltransferase; Provisional

Probab=99.17  E-value=8.9e-10  Score=97.75  Aligned_cols=136  Identities=14%  Similarity=0.165  Sum_probs=94.6

Q ss_pred             cCCCCcHHHHHHHHcccCCCCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCC--------CCC
Q 019861          157 GGFPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES--------NFP  228 (334)
Q Consensus       157 ~~~~~~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~--------~~~  228 (334)
                      +.|..|......+.  +......+|||+|||+|.++..++...+..+++|+|+++.+++.+++++....        ...
T Consensus        46 G~FfTP~~i~~~f~--~~~~~~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n~~~v~~v~~D~~e~~~  123 (279)
T PHA03411         46 GAFFTPEGLAWDFT--IDAHCTGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLLPEAEWITSDVFEFES  123 (279)
T ss_pred             eeEcCCHHHHHHHH--hccccCCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhCcCCEEEECchhhhcc
Confidence            44555665553332  22334579999999999998888776444699999999999999998643211        123


Q ss_pred             CCCceEEEeCccccCCCC--------------------HHHHHHHHHHcccCCcEEEEEEeccCCCCCchHHHHHHHHHh
Q 019861          229 KDSIDAVHAGAAIHCWSS--------------------PSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNM  288 (334)
Q Consensus       229 ~~~fD~V~~~~vl~h~~d--------------------~~~~L~~i~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~  288 (334)
                      +++||+|+++--+.|...                    ...+++....+|+|+|.+++..-..       +.       +
T Consensus       124 ~~kFDlIIsNPPF~~l~~~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~yss~-------~~-------y  189 (279)
T PHA03411        124 NEKFDVVISNPPFGKINTTDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFAYSGR-------PY-------Y  189 (279)
T ss_pred             cCCCcEEEEcCCccccCchhhhhhhhhccCccccccccHHHHHhhhHheecCCceEEEEEecc-------cc-------c
Confidence            568999999877776532                    1356777888999999777652221       11       0


Q ss_pred             hhhcCccCCCCHHHHHHHHHhCCCcE
Q 019861          289 MQISGSYTFLSEREIEDLCRACGLVD  314 (334)
Q Consensus       289 ~~~~~~~~~~t~~~l~~ll~~~Gf~~  314 (334)
                           | .-++.++.+++|+++||..
T Consensus       190 -----~-~sl~~~~y~~~l~~~g~~~  209 (279)
T PHA03411        190 -----D-GTMKSNKYLKWSKQTGLVT  209 (279)
T ss_pred             -----c-ccCCHHHHHHHHHhcCcEe
Confidence                 1 2358999999999999954

>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional

Probab=99.15  E-value=2e-09  Score=101.08  Aligned_cols=139  Identities=14%  Similarity=0.081  Sum_probs=94.4

Q ss_pred             HHHHHHHcccCCCCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCC-------------CC-CC
Q 019861          164 KEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES-------------NF-PK  229 (334)
Q Consensus       164 ~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~-------------~~-~~  229 (334)
                      .+.+.+...+.  ++.+|||+|||+|.++..++...+..+++|+|+|+.+++.++++.....             .+ .+
T Consensus       240 ~LVe~aL~~l~--~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa~~~g~rV~fi~gDl~e~~l~~~  317 (423)
T PRK14966        240 HLVEAVLARLP--ENGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNAADLGARVEFAHGSWFDTDMPSE  317 (423)
T ss_pred             HHHHHhhhccC--CCCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCcEEEEEcchhccccccC
Confidence            34444444443  3569999999999999999887767799999999999999998865321             11 23


Q ss_pred             CCceEEEeCcc---------c----cC--------CCC----HHHHHHHHHHcccCCcEEEEEEeccCCCCCchHHHHHH
Q 019861          230 DSIDAVHAGAA---------I----HC--------WSS----PSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLL  284 (334)
Q Consensus       230 ~~fD~V~~~~v---------l----~h--------~~d----~~~~L~~i~r~LkpgG~lii~~~~~~~~~~~~~~~~~~  284 (334)
                      ++||+|+++--         +    .|        -.|    ...+++.+.+.|+|||.+++....              
T Consensus       318 ~~FDLIVSNPPYI~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lilEiG~--------------  383 (423)
T PRK14966        318 GKWDIIVSNPPYIENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLLEHGF--------------  383 (423)
T ss_pred             CCccEEEECCCCCCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEEEECc--------------
Confidence            57999999521         0    00        001    125666777899999998874432              


Q ss_pred             HHHhhhhcCccCCCCHHHHHHHHHhCCCcEEEEe--ecCcEEEEEEEcC
Q 019861          285 RQNMMQISGSYTFLSEREIEDLCRACGLVDFKCT--RNRGFVMFTATKP  331 (334)
Q Consensus       285 ~~~~~~~~~~~~~~t~~~l~~ll~~~Gf~~v~~~--~~g~~~~~~a~K~  331 (334)
                                   -..+.+.+++++.||..++..  ..|.--++.+++.
T Consensus       384 -------------~Q~e~V~~ll~~~Gf~~v~v~kDl~G~dR~v~~~~~  419 (423)
T PRK14966        384 -------------DQGAAVRGVLAENGFSGVETLPDLAGLDRVTLGKYM  419 (423)
T ss_pred             -------------cHHHHHHHHHHHCCCcEEEEEEcCCCCcEEEEEEEh
Confidence                         135688999999999876643  3344444445543

>COG4123 Predicted O-methyltransferase [General function prediction only]

Probab=99.14  E-value=2.1e-09  Score=94.05  Aligned_cols=124  Identities=16%  Similarity=0.194  Sum_probs=94.4

Q ss_pred             HHHcccCCCCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCC-----------------CCCCC
Q 019861          168 LMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES-----------------NFPKD  230 (334)
Q Consensus       168 ~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~-----------------~~~~~  230 (334)
                      ++..+......++|||+|||+|..+..++++...++++|+|+.+.+.+.|+++++...                 .....
T Consensus        35 LL~~~~~~~~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~~~~~  114 (248)
T COG4123          35 LLAAFAPVPKKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKALVFA  114 (248)
T ss_pred             HHHhhcccccCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhhccccc
Confidence            4445555556789999999999999999999666899999999999999999876532                 23345


Q ss_pred             CceEEEeCc------cc----------cCC--CCHHHHHHHHHHcccCCcEEEEEEeccCCCCCchHHHHHHHHHhhhhc
Q 019861          231 SIDAVHAGA------AI----------HCW--SSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQIS  292 (334)
Q Consensus       231 ~fD~V~~~~------vl----------~h~--~d~~~~L~~i~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~  292 (334)
                      +||+|+|+=      .-          +|.  .+.+..++...++|||||.+.+.-+..                     
T Consensus       115 ~fD~Ii~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V~r~e---------------------  173 (248)
T COG4123         115 SFDLIICNPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFVHRPE---------------------  173 (248)
T ss_pred             ccCEEEeCCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEEecHH---------------------
Confidence            799999961      11          111  134678999999999999999866532                     


Q ss_pred             CccCCCCHHHHHHHHHhCCCcEEEEe
Q 019861          293 GSYTFLSEREIEDLCRACGLVDFKCT  318 (334)
Q Consensus       293 ~~~~~~t~~~l~~ll~~~Gf~~v~~~  318 (334)
                            ...+|.+++++.+|...+..
T Consensus       174 ------rl~ei~~~l~~~~~~~k~i~  193 (248)
T COG4123         174 ------RLAEIIELLKSYNLEPKRIQ  193 (248)
T ss_pred             ------HHHHHHHHHHhcCCCceEEE
Confidence                  34588899999999776643

>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes

Probab=99.13  E-value=5.7e-10  Score=97.04  Aligned_cols=127  Identities=20%  Similarity=0.246  Sum_probs=90.2

Q ss_pred             cCCCCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhc--C----C---------------C-CC--
Q 019861          173 LKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQ--E----S---------------N-FP--  228 (334)
Q Consensus       173 l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~--~----~---------------~-~~--  228 (334)
                      +...++.+||..|||.|.-+..|++.|.  +|+|+|+|+.+++.+.+....  .    .               . |.  
T Consensus        33 l~~~~~~rvLvPgCG~g~D~~~La~~G~--~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~l~  110 (218)
T PF05724_consen   33 LALKPGGRVLVPGCGKGYDMLWLAEQGH--DVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDFFELP  110 (218)
T ss_dssp             HTTSTSEEEEETTTTTSCHHHHHHHTTE--EEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-TTTGG
T ss_pred             cCCCCCCeEEEeCCCChHHHHHHHHCCC--eEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEEcccccCC
Confidence            5556678999999999999999999997  999999999999998543221  0    0               1 11  


Q ss_pred             ---CCCceEEEeCccccCCC--CHHHHHHHHHHcccCCcEEEEEEeccCCCCCchHHHHHHHHHhhhhcCccCCCCHHHH
Q 019861          229 ---KDSIDAVHAGAAIHCWS--SPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREI  303 (334)
Q Consensus       229 ---~~~fD~V~~~~vl~h~~--d~~~~L~~i~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~l  303 (334)
                         .++||+|+-...|.-++  ......+.+.++|+|||.+++.+...+....               .+.....+.+++
T Consensus       111 ~~~~g~fD~iyDr~~l~Alpp~~R~~Ya~~l~~ll~p~g~~lLi~l~~~~~~~---------------~GPPf~v~~~ev  175 (218)
T PF05724_consen  111 PEDVGKFDLIYDRTFLCALPPEMRERYAQQLASLLKPGGRGLLITLEYPQGEM---------------EGPPFSVTEEEV  175 (218)
T ss_dssp             GSCHHSEEEEEECSSTTTS-GGGHHHHHHHHHHCEEEEEEEEEEEEES-CSCS---------------SSSS----HHHH
T ss_pred             hhhcCCceEEEEecccccCCHHHHHHHHHHHHHHhCCCCcEEEEEEEcCCcCC---------------CCcCCCCCHHHH
Confidence               24799999999888776  3357899999999999996666655432111               122334688999


Q ss_pred             HHHHHhCCCcEEEE
Q 019861          304 EDLCRACGLVDFKC  317 (334)
Q Consensus       304 ~~ll~~~Gf~~v~~  317 (334)
                      .+++. .+|++...
T Consensus       176 ~~l~~-~~f~i~~l  188 (218)
T PF05724_consen  176 RELFG-PGFEIEEL  188 (218)
T ss_dssp             HHHHT-TTEEEEEE
T ss_pred             HHHhc-CCcEEEEE
Confidence            99998 88877653

Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.

>PRK13256 thiopurine S-methyltransferase; Reviewed

Probab=99.12  E-value=1.6e-09  Score=94.16  Aligned_cols=118  Identities=13%  Similarity=0.086  Sum_probs=87.9

Q ss_pred             CCCCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHh---------------cCC---------CCC-
Q 019861          174 KPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQ---------------QES---------NFP-  228 (334)
Q Consensus       174 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~---------------~~~---------~~~-  228 (334)
                      ...++.+||+.|||.|..+.+|+..|.  +|+|+|+|+..++.+.+...               ...         .++ 
T Consensus        40 ~~~~~~rvLvPgCGkg~D~~~LA~~G~--~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~  117 (226)
T PRK13256         40 NINDSSVCLIPMCGCSIDMLFFLSKGV--KVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLPK  117 (226)
T ss_pred             CCCCCCeEEEeCCCChHHHHHHHhCCC--cEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCCCc
Confidence            333568999999999999999999998  89999999999999865311               000         111 


Q ss_pred             ----CCCceEEEeCccccCCCCH--HHHHHHHHHcccCCcEEEEEEeccCCCCCchHHHHHHHHHhhhhcCccCCCCHHH
Q 019861          229 ----KDSIDAVHAGAAIHCWSSP--STGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSERE  302 (334)
Q Consensus       229 ----~~~fD~V~~~~vl~h~~d~--~~~L~~i~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~  302 (334)
                          .+.||+|+-...|.+++..  ....+.+.++|+|||.+++.+...+....                +.....+.++
T Consensus       118 ~~~~~~~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~pgg~llll~~~~~~~~~----------------GPPf~v~~~e  181 (226)
T PRK13256        118 IANNLPVFDIWYDRGAYIALPNDLRTNYAKMMLEVCSNNTQILLLVMEHDKKSQ----------------TPPYSVTQAE  181 (226)
T ss_pred             cccccCCcCeeeeehhHhcCCHHHHHHHHHHHHHHhCCCcEEEEEEEecCCCCC----------------CCCCcCCHHH
Confidence                2579999999999999743  47899999999999999988875432111                1122356778


Q ss_pred             HHHHHHh
Q 019861          303 IEDLCRA  309 (334)
Q Consensus       303 l~~ll~~  309 (334)
                      +++++..
T Consensus       182 ~~~lf~~  188 (226)
T PRK13256        182 LIKNFSA  188 (226)
T ss_pred             HHHhccC
Confidence            8777754

>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=99.11  E-value=7.3e-10  Score=94.07  Aligned_cols=97  Identities=20%  Similarity=0.225  Sum_probs=82.2

Q ss_pred             HHHHHHcccCCCCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCCC-------------C-CCC
Q 019861          165 EFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESN-------------F-PKD  230 (334)
Q Consensus       165 ~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~-------------~-~~~  230 (334)
                      ....+.+.+...++.+|||||||+|+.+..|++...  +|+.+|..+...+.|++++...+-             . +..
T Consensus        60 ~vA~m~~~L~~~~g~~VLEIGtGsGY~aAvla~l~~--~V~siEr~~~L~~~A~~~L~~lg~~nV~v~~gDG~~G~~~~a  137 (209)
T COG2518          60 MVARMLQLLELKPGDRVLEIGTGSGYQAAVLARLVG--RVVSIERIEELAEQARRNLETLGYENVTVRHGDGSKGWPEEA  137 (209)
T ss_pred             HHHHHHHHhCCCCCCeEEEECCCchHHHHHHHHHhC--eEEEEEEcHHHHHHHHHHHHHcCCCceEEEECCcccCCCCCC
Confidence            345677788888999999999999999999999875  999999999999999998775431             2 347


Q ss_pred             CceEEEeCccccCCCCHHHHHHHHHHcccCCcEEEEEEe
Q 019861          231 SIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTY  269 (334)
Q Consensus       231 ~fD~V~~~~vl~h~~d~~~~L~~i~r~LkpgG~lii~~~  269 (334)
                      +||.|+.......+|++      +.+.|++||++++-.-
T Consensus       138 PyD~I~Vtaaa~~vP~~------Ll~QL~~gGrlv~PvG  170 (209)
T COG2518         138 PYDRIIVTAAAPEVPEA------LLDQLKPGGRLVIPVG  170 (209)
T ss_pred             CcCEEEEeeccCCCCHH------HHHhcccCCEEEEEEc
Confidence            99999999998887655      6778999999999665

>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes

Probab=99.10  E-value=4.4e-10  Score=103.52  Aligned_cols=95  Identities=28%  Similarity=0.425  Sum_probs=71.7

Q ss_pred             CCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhc--------CC--------------------CCC
Q 019861          177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQ--------ES--------------------NFP  228 (334)
Q Consensus       177 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~--------~~--------------------~~~  228 (334)
                      ++.+|||+|||-|.-+.-+...+ -..++|+|++...++.|++++..        ..                    .++
T Consensus        62 ~~~~VLDl~CGkGGDL~Kw~~~~-i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~~  140 (331)
T PF03291_consen   62 PGLTVLDLCCGKGGDLQKWQKAK-IKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKLP  140 (331)
T ss_dssp             TT-EEEEET-TTTTTHHHHHHTT--SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTSS
T ss_pred             CCCeEEEecCCCchhHHHHHhcC-CCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhcc
Confidence            57899999999988777777765 35999999999999999998821        00                    123


Q ss_pred             C--CCceEEEeCccccCCCCH----HHHHHHHHHcccCCcEEEEEEeccC
Q 019861          229 K--DSIDAVHAGAAIHCWSSP----STGVAEISRVLRPGGVFVGTTYIVD  272 (334)
Q Consensus       229 ~--~~fD~V~~~~vl~h~~d~----~~~L~~i~r~LkpgG~lii~~~~~~  272 (334)
                      +  ..||+|.|.+.||+.=..    ..+|+.+.+.|+|||+++.++|+.+
T Consensus       141 ~~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT~~d~~  190 (331)
T PF03291_consen  141 PRSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFIGTTPDSD  190 (331)
T ss_dssp             STTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE-HH
T ss_pred             ccCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEEEecCHH
Confidence            3  499999999999987433    3689999999999999999999863

The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.

>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific

Probab=99.10  E-value=4.2e-09  Score=93.84  Aligned_cols=117  Identities=19%  Similarity=0.176  Sum_probs=84.0

Q ss_pred             CCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCC----------CCC---CCCceEEEeCc-----
Q 019861          178 GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES----------NFP---KDSIDAVHAGA-----  239 (334)
Q Consensus       178 ~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~----------~~~---~~~fD~V~~~~-----  239 (334)
                      +.+|||+|||+|.++..++...+..+++|+|+|+.+++.++++.....          .++   .++||+|+++-     
T Consensus        87 ~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~~~~~~~~~~~D~~~~l~~~~~~~fDlVv~NPPy~~~  166 (251)
T TIGR03704        87 TLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNLADAGGTVHEGDLYDALPTALRGRVDILAANAPYVPT  166 (251)
T ss_pred             CCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCEEEEeechhhcchhcCCCEeEEEECCCCCCc
Confidence            458999999999999999887666689999999999999998865321          111   25799999862     


Q ss_pred             -ccc--------CCC--------C----HHHHHHHHHHcccCCcEEEEEEeccCCCCCchHHHHHHHHHhhhhcCccCCC
Q 019861          240 -AIH--------CWS--------S----PSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFL  298 (334)
Q Consensus       240 -vl~--------h~~--------d----~~~~L~~i~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  298 (334)
                       .+.        |.+        |    ...+++.+.++|+|||++++.....                           
T Consensus       167 ~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~~~~~---------------------------  219 (251)
T TIGR03704       167 DAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVETSER---------------------------  219 (251)
T ss_pred             hhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECcc---------------------------
Confidence             111        110        1    1367777889999999999865421                           


Q ss_pred             CHHHHHHHHHhCCCcEEEEeecC
Q 019861          299 SEREIEDLCRACGLVDFKCTRNR  321 (334)
Q Consensus       299 t~~~l~~ll~~~Gf~~v~~~~~g  321 (334)
                      ..+++..++++.||+..-.....
T Consensus       220 ~~~~v~~~l~~~g~~~~~~~~~~  242 (251)
T TIGR03704       220 QAPLAVEAFARAGLIARVASSEE  242 (251)
T ss_pred             hHHHHHHHHHHCCCCceeeEccc
Confidence            24578888999999654443333

This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.

>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []

Probab=99.10  E-value=1.3e-09  Score=95.95  Aligned_cols=127  Identities=19%  Similarity=0.327  Sum_probs=95.9

Q ss_pred             CCcHHHHHHHHcccCCCCCCcEEEECCCcCHHHHHHHHc-CCCCeEEEEeCCHHHHHHHHHHHhcCC-------------
Q 019861          160 PGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQQES-------------  225 (334)
Q Consensus       160 ~~~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~~v~giD~s~~~~~~a~~~~~~~~-------------  225 (334)
                      ....+-...|..++...||.+|||.|.|+|.++..|+.. ++.++|+.+|+.+...+.|++++....             
T Consensus        23 IiYpkD~~~I~~~l~i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv~  102 (247)
T PF08704_consen   23 IIYPKDISYILMRLDIRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLDDNVTVHHRDVC  102 (247)
T ss_dssp             ---HHHHHHHHHHTT--TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCCTTEEEEES-GG
T ss_pred             eeeCchHHHHHHHcCCCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCCCCceeEeccee
Confidence            334455668888899999999999999999999999975 778899999999999999999887543             


Q ss_pred             --CCC---CCCceEEEeCccccCCCCHHHHHHHHHHcc-cCCcEEEEEEeccCCCCCchHHHHHHHHHhhhhcCccCCCC
Q 019861          226 --NFP---KDSIDAVHAGAAIHCWSSPSTGVAEISRVL-RPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLS  299 (334)
Q Consensus       226 --~~~---~~~fD~V~~~~vl~h~~d~~~~L~~i~r~L-kpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t  299 (334)
                        .|+   +..+|+|+..     +++|..++..+.++| ++||++.+-.|+.+                          -
T Consensus       103 ~~g~~~~~~~~~DavfLD-----lp~Pw~~i~~~~~~L~~~gG~i~~fsP~ie--------------------------Q  151 (247)
T PF08704_consen  103 EEGFDEELESDFDAVFLD-----LPDPWEAIPHAKRALKKPGGRICCFSPCIE--------------------------Q  151 (247)
T ss_dssp             CG--STT-TTSEEEEEEE-----SSSGGGGHHHHHHHE-EEEEEEEEEESSHH--------------------------H
T ss_pred             cccccccccCcccEEEEe-----CCCHHHHHHHHHHHHhcCCceEEEECCCHH--------------------------H
Confidence              132   2568888765     689999999999999 89999999888742                          1


Q ss_pred             HHHHHHHHHhCCCcEEEE
Q 019861          300 EREIEDLCRACGLVDFKC  317 (334)
Q Consensus       300 ~~~l~~ll~~~Gf~~v~~  317 (334)
                      .....+.|++.||..++.
T Consensus       152 v~~~~~~L~~~gf~~i~~  169 (247)
T PF08704_consen  152 VQKTVEALREHGFTDIET  169 (247)
T ss_dssp             HHHHHHHHHHTTEEEEEE
T ss_pred             HHHHHHHHHHCCCeeeEE
Confidence            234566778889977763

; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.

>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed

Probab=99.09  E-value=1.9e-09  Score=105.21  Aligned_cols=113  Identities=16%  Similarity=0.098  Sum_probs=83.7

Q ss_pred             CCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCC--------------CCCCCCceEEEeCc----
Q 019861          178 GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES--------------NFPKDSIDAVHAGA----  239 (334)
Q Consensus       178 ~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~--------------~~~~~~fD~V~~~~----  239 (334)
                      +.+|||+|||+|.++..++...+..+++++|+|+.+++.|+++.....              .+++++||+|+++-    
T Consensus       139 ~~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~~~~~~~fDlIvsNPPYi~  218 (506)
T PRK01544        139 FLNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFENIEKQKFDFIVSNPPYIS  218 (506)
T ss_pred             CCEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCCccceeeeecchhhhCcCCCccEEEECCCCCC
Confidence            468999999999999999887667799999999999999998765321              13346899999841    


Q ss_pred             ----------cccCCC--------C----HHHHHHHHHHcccCCcEEEEEEeccCCCCCchHHHHHHHHHhhhhcCccCC
Q 019861          240 ----------AIHCWS--------S----PSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTF  297 (334)
Q Consensus       240 ----------vl~h~~--------d----~~~~L~~i~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  297 (334)
                                ++.|-+        |    ...+++++.++|+|||.+++....                           
T Consensus       219 ~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~lEig~---------------------------  271 (506)
T PRK01544        219 HSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIILEIGF---------------------------  271 (506)
T ss_pred             chhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEEEECC---------------------------
Confidence                      222221        1    134677888999999999875321                           


Q ss_pred             CCHHHHHHHHHhCCCcEEEE
Q 019861          298 LSEREIEDLCRACGLVDFKC  317 (334)
Q Consensus       298 ~t~~~l~~ll~~~Gf~~v~~  317 (334)
                      -..+.+.+++++.||..++.
T Consensus       272 ~q~~~v~~~~~~~g~~~~~~  291 (506)
T PRK01544        272 KQEEAVTQIFLDHGYNIESV  291 (506)
T ss_pred             chHHHHHHHHHhcCCCceEE
Confidence            13567888899999976653

>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2

Probab=99.06  E-value=5.3e-10  Score=96.46  Aligned_cols=99  Identities=18%  Similarity=0.236  Sum_probs=74.3

Q ss_pred             HHHHHcccCCCCCCcEEEECCCcCHHHHHHHHc-CCCCeEEEEeCCHHHHHHHHHHHhcCC--------------CCCCC
Q 019861          166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQQES--------------NFPKD  230 (334)
Q Consensus       166 ~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~~v~giD~s~~~~~~a~~~~~~~~--------------~~~~~  230 (334)
                      ...+.+++...++.+|||||||+|+++..++.. ++...|+++|.++...+.|++++....              .-...
T Consensus        61 ~a~~l~~L~l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~nv~~~~gdg~~g~~~~a  140 (209)
T PF01135_consen   61 VARMLEALDLKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGIDNVEVVVGDGSEGWPEEA  140 (209)
T ss_dssp             HHHHHHHTTC-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTHSEEEEES-GGGTTGGG-
T ss_pred             HHHHHHHHhcCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccCceeEEEcchhhccccCC
Confidence            346667777888999999999999999999887 544579999999999999999877432              11346


Q ss_pred             CceEEEeCccccCCCCHHHHHHHHHHcccCCcEEEEEEec
Q 019861          231 SIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYI  270 (334)
Q Consensus       231 ~fD~V~~~~vl~h~~d~~~~L~~i~r~LkpgG~lii~~~~  270 (334)
                      .||.|++......++.      .+.+.|++||++++-...
T Consensus       141 pfD~I~v~~a~~~ip~------~l~~qL~~gGrLV~pi~~  174 (209)
T PF01135_consen  141 PFDRIIVTAAVPEIPE------ALLEQLKPGGRLVAPIGQ  174 (209)
T ss_dssp             SEEEEEESSBBSS--H------HHHHTEEEEEEEEEEESS
T ss_pred             CcCEEEEeeccchHHH------HHHHhcCCCcEEEEEEcc
Confidence            8999999998876542      367789999999985543

1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....

>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)

Probab=99.05  E-value=2.2e-09  Score=80.83  Aligned_cols=87  Identities=25%  Similarity=0.369  Sum_probs=71.2

Q ss_pred             cEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCC--------------C-CCCCCceEEEeCccccC-
Q 019861          180 NIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES--------------N-FPKDSIDAVHAGAAIHC-  243 (334)
Q Consensus       180 ~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~--------------~-~~~~~fD~V~~~~vl~h-  243 (334)
                      +|||+|||.|.++..+.. ....+++++|+++..++.+++......              . ...++||+|++..++++ 
T Consensus         1 ~ildig~G~G~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~~   79 (107)
T cd02440           1 RVLDLGCGTGALALALAS-GPGARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELPPEADESFDVIISDPPLHHL   79 (107)
T ss_pred             CeEEEcCCccHHHHHHhc-CCCCEEEEEeCCHHHHHHHHHHHhcccccceEEEEcChhhhccccCCceEEEEEccceeeh
Confidence            589999999999999888 335699999999999988874322111              1 13568999999999999 


Q ss_pred             CCCHHHHHHHHHHcccCCcEEEEE
Q 019861          244 WSSPSTGVAEISRVLRPGGVFVGT  267 (334)
Q Consensus       244 ~~d~~~~L~~i~r~LkpgG~lii~  267 (334)
                      ..+...+++.+.+.|+|||.+++.
T Consensus        80 ~~~~~~~l~~~~~~l~~~g~~~~~  103 (107)
T cd02440          80 VEDLARFLEEARRLLKPGGVLVLT  103 (107)
T ss_pred             hhHHHHHHHHHHHHcCCCCEEEEE
Confidence            778889999999999999999876

There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).

>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]

Probab=99.03  E-value=1.1e-08  Score=92.36  Aligned_cols=125  Identities=21%  Similarity=0.242  Sum_probs=92.1

Q ss_pred             cEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCC----------CCC--CCCceEEEeC--cc---cc
Q 019861          180 NIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES----------NFP--KDSIDAVHAG--AA---IH  242 (334)
Q Consensus       180 ~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~----------~~~--~~~fD~V~~~--~v---l~  242 (334)
                      +|||+|||+|..+..++...+...|+|+|+|+.+++.|+++....+          -|.  .++||+|+++  ++   ..
T Consensus       113 ~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~~~~l~~~~~~~~dlf~~~~~~fDlIVsNPPYip~~~~  192 (280)
T COG2890         113 RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAERNGLVRVLVVQSDLFEPLRGKFDLIVSNPPYIPAEDP  192 (280)
T ss_pred             cEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHHHHHcCCccEEEEeeecccccCCceeEEEeCCCCCCCccc
Confidence            7999999999999999999988899999999999999998876543          022  3489999986  11   11


Q ss_pred             CC-C-----CH--------------HHHHHHHHHcccCCcEEEEEEeccCCCCCchHHHHHHHHHhhhhcCccCCCCHHH
Q 019861          243 CW-S-----SP--------------STGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSERE  302 (334)
Q Consensus       243 h~-~-----d~--------------~~~L~~i~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~  302 (334)
                      +. +     +|              ..++.++.+.|+|||.+++..-.                           -..+.
T Consensus       193 ~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le~g~---------------------------~q~~~  245 (280)
T COG2890         193 ELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILEIGL---------------------------TQGEA  245 (280)
T ss_pred             ccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEEEECC---------------------------CcHHH
Confidence            11 1     22              35788899999999988885432                           24678


Q ss_pred             HHHHHHhCC-CcEEEEe--ecCcEEEEEEEcC
Q 019861          303 IEDLCRACG-LVDFKCT--RNRGFVMFTATKP  331 (334)
Q Consensus       303 l~~ll~~~G-f~~v~~~--~~g~~~~~~a~K~  331 (334)
                      +.+++++.| |..+...  ..|...++.+++.
T Consensus       246 v~~~~~~~~~~~~v~~~~d~~g~~rv~~~~~~  277 (280)
T COG2890         246 VKALFEDTGFFEIVETLKDLFGRDRVVLAKLR  277 (280)
T ss_pred             HHHHHHhcCCceEEEEEecCCCceEEEEEEec
Confidence            999999999 6655533  3455555555543

>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]

Probab=99.02  E-value=3e-09  Score=96.39  Aligned_cols=149  Identities=11%  Similarity=0.144  Sum_probs=106.1

Q ss_pred             CcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHh-cCC-----CCC-CCCceEEEeCccccCCCCH--HH
Q 019861          179 GNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQ-QES-----NFP-KDSIDAVHAGAAIHCWSSP--ST  249 (334)
Q Consensus       179 ~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~-~~~-----~~~-~~~fD~V~~~~vl~h~~d~--~~  249 (334)
                      ...+|+|.|.|..+..+...++  ++-|++++...+..++..+. +-.     .|. -.+-|+|++.++||||.|-  ..
T Consensus       179 ~~avDvGgGiG~v~k~ll~~fp--~ik~infdlp~v~~~a~~~~~gV~~v~gdmfq~~P~~daI~mkWiLhdwtDedcvk  256 (342)
T KOG3178|consen  179 NVAVDVGGGIGRVLKNLLSKYP--HIKGINFDLPFVLAAAPYLAPGVEHVAGDMFQDTPKGDAIWMKWILHDWTDEDCVK  256 (342)
T ss_pred             ceEEEcCCcHhHHHHHHHHhCC--CCceeecCHHHHHhhhhhhcCCcceecccccccCCCcCeEEEEeecccCChHHHHH
Confidence            6899999999999999999877  89999999998888887773 211     111 2345799999999999976  58


Q ss_pred             HHHHHHHcccCCcEEEEEEeccCCCCCc----hHHHHHHHHHhhhhcCccCCCCHHHHHHHHHhCCCcEEEEeec-CcEE
Q 019861          250 GVAEISRVLRPGGVFVGTTYIVDGPFNL----IPFSRLLRQNMMQISGSYTFLSEREIEDLCRACGLVDFKCTRN-RGFV  324 (334)
Q Consensus       250 ~L~~i~r~LkpgG~lii~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~t~~~l~~ll~~~Gf~~v~~~~~-g~~~  324 (334)
                      +|++++..|+|||.+++.+...+.-...    ...................-.+.++++.++.++||.+....-. ..+.
T Consensus       257 iLknC~~sL~~~GkIiv~E~V~p~e~~~dd~~s~v~~~~d~lm~~~~~~Gkert~~e~q~l~~~~gF~~~~~~~~~~~~~  336 (342)
T KOG3178|consen  257 ILKNCKKSLPPGGKIIVVENVTPEEDKFDDIDSSVTRDMDLLMLTQTSGGKERTLKEFQALLPEEGFPVCMVALTAYSYS  336 (342)
T ss_pred             HHHHHHHhCCCCCEEEEEeccCCCCCCccccccceeehhHHHHHHHhccceeccHHHHHhcchhhcCceeEEEeccCccc
Confidence            9999999999999999998865431111    1111112222222222344568999999999999999886543 3444


Q ss_pred             EEEEE
Q 019861          325 MFTAT  329 (334)
Q Consensus       325 ~~~a~  329 (334)
                      ++.++
T Consensus       337 ~Ie~~  341 (342)
T KOG3178|consen  337 VIEFH  341 (342)
T ss_pred             hheeC
Confidence            44433

>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]

Probab=99.02  E-value=4.7e-09  Score=90.67  Aligned_cols=165  Identities=17%  Similarity=0.202  Sum_probs=108.8

Q ss_pred             chhhccCc-hhHHHHHHhHHHhhHhcCCCCcHHHHHHHHcccCCC-CCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCC
Q 019861          133 ATEFFRMP-FMSFIYERGWRQNFVWGGFPGPEKEFELMKGYLKPV-LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYS  210 (334)
Q Consensus       133 ~~~~~~~~-~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~l~~~-~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s  210 (334)
                      ...+|..+ -.-..|+.+++......    |..-.+.+.+.+... ....|.|+|||.+.++.   ..  .-.|+.+|+.
T Consensus       138 A~~lfkedp~afdlYH~gfr~QV~kW----P~nPld~ii~~ik~r~~~~vIaD~GCGEakiA~---~~--~~kV~SfDL~  208 (325)
T KOG3045|consen  138 AFDLFKEDPTAFDLYHAGFRSQVKKW----PENPLDVIIRKIKRRPKNIVIADFGCGEAKIAS---SE--RHKVHSFDLV  208 (325)
T ss_pred             HHHHHhcCcHHHHHHHHHHHHHHHhC----CCChHHHHHHHHHhCcCceEEEecccchhhhhh---cc--ccceeeeeee
Confidence            33444333 33346777777554321    222234555555433 34689999999997765   11  1267777764


Q ss_pred             HHHHHHHHHHHhcCCCCCCCCceEEEeCccccCCCCHHHHHHHHHHcccCCcEEEEEEeccCCCCCchHHHHHHHHHhhh
Q 019861          211 ENMLKQCYEFVQQESNFPKDSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQ  290 (334)
Q Consensus       211 ~~~~~~a~~~~~~~~~~~~~~fD~V~~~~vl~h~~d~~~~L~~i~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~  290 (334)
                      +..-....-.+ ...|+++++.|+++.+-+|.- .|...++.++.|+|++||.++|.+...                   
T Consensus       209 a~~~~V~~cDm-~~vPl~d~svDvaV~CLSLMg-tn~~df~kEa~RiLk~gG~l~IAEv~S-------------------  267 (325)
T KOG3045|consen  209 AVNERVIACDM-RNVPLEDESVDVAVFCLSLMG-TNLADFIKEANRILKPGGLLYIAEVKS-------------------  267 (325)
T ss_pred             cCCCceeeccc-cCCcCccCcccEEEeeHhhhc-ccHHHHHHHHHHHhccCceEEEEehhh-------------------
Confidence            32111000000 225788999999999887764 588899999999999999999977532                   


Q ss_pred             hcCccCCCCHHHHHHHHHhCCCcEEEE-eecCcEEEEEEEcCC
Q 019861          291 ISGSYTFLSEREIEDLCRACGLVDFKC-TRNRGFVMFTATKPS  332 (334)
Q Consensus       291 ~~~~~~~~t~~~l~~ll~~~Gf~~v~~-~~~g~~~~~~a~K~~  332 (334)
                           ++-+...+.+.+...||.+... ..+..|.++..+|+.
T Consensus       268 -----Rf~dv~~f~r~l~~lGF~~~~~d~~n~~F~lfefkK~~  305 (325)
T KOG3045|consen  268 -----RFSDVKGFVRALTKLGFDVKHKDVSNKYFTLFEFKKTP  305 (325)
T ss_pred             -----hcccHHHHHHHHHHcCCeeeehhhhcceEEEEEEecCC
Confidence                 3457778999999999998774 456678888888764

>KOG2899 consensus Predicted methyltransferase [General function prediction only]

Probab=99.00  E-value=1.9e-09  Score=92.30  Aligned_cols=135  Identities=16%  Similarity=0.186  Sum_probs=92.4

Q ss_pred             CCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCC-------------------------------
Q 019861          177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES-------------------------------  225 (334)
Q Consensus       177 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~-------------------------------  225 (334)
                      .+..+|||||..|.++..+++......+.|+|+++..++.|++++.--.                               
T Consensus        58 ~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~~a~~a~  137 (288)
T KOG2899|consen   58 EPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRNEADRAF  137 (288)
T ss_pred             CcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhccccccccccccCCCccccccccccccccccccccc
Confidence            3678999999999999999998656789999999999999998643110                               


Q ss_pred             -----------------------CCCCCCceEEEeCcccc--CCC--C--HHHHHHHHHHcccCCcEEEEEEeccCCCCC
Q 019861          226 -----------------------NFPKDSIDAVHAGAAIH--CWS--S--PSTGVAEISRVLRPGGVFVGTTYIVDGPFN  276 (334)
Q Consensus       226 -----------------------~~~~~~fD~V~~~~vl~--h~~--d--~~~~L~~i~r~LkpgG~lii~~~~~~~~~~  276 (334)
                                             .+....||+|+|..+-.  |+.  |  ...++++|.++|.|||+|++.-..+++...
T Consensus       138 t~~~p~n~~f~~~n~vle~~dfl~~~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pgGiLvvEPQpWksY~k  217 (288)
T KOG2899|consen  138 TTDFPDNVWFQKENYVLESDDFLDMIQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPGGILVVEPQPWKSYKK  217 (288)
T ss_pred             cccCCcchhcccccEEEecchhhhhccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCcCcEEEEcCCchHHHHH
Confidence                                   01245799999965422  222  2  368999999999999999985544432211


Q ss_pred             chHHHHHHHHHhhhhcCccCCCCHHHHHHHHHhC--CCcEEE
Q 019861          277 LIPFSRLLRQNMMQISGSYTFLSEREIEDLCRAC--GLVDFK  316 (334)
Q Consensus       277 ~~~~~~~~~~~~~~~~~~~~~~t~~~l~~ll~~~--Gf~~v~  316 (334)
                      ...    ....... .....++.++.+..++.+.  ||+-++
T Consensus       218 aar----~~e~~~~-ny~~i~lkp~~f~~~l~q~~vgle~~e  254 (288)
T KOG2899|consen  218 AAR----RSEKLAA-NYFKIFLKPEDFEDWLNQIVVGLESVE  254 (288)
T ss_pred             HHH----HHHHhhc-CccceecCHHHHHhhhhhhhhheeeec
Confidence            111    1111111 1123467889999999887  675544

>PRK00811 spermidine synthase; Provisional

Probab=99.00  E-value=7.7e-09  Score=93.84  Aligned_cols=92  Identities=14%  Similarity=0.230  Sum_probs=70.4

Q ss_pred             CCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhc-------CC-------------CCCCCCceEEE
Q 019861          177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQ-------ES-------------NFPKDSIDAVH  236 (334)
Q Consensus       177 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~-------~~-------------~~~~~~fD~V~  236 (334)
                      .+.+||+||||.|..+..+.+.....+++++|+++.+++.|++.+..       +.             ...+++||+|+
T Consensus        76 ~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvIi  155 (283)
T PRK00811         76 NPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFDVII  155 (283)
T ss_pred             CCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCcccEEE
Confidence            35799999999999999998764446899999999999999987642       11             11256899999


Q ss_pred             eCccccCCCC----HHHHHHHHHHcccCCcEEEEEE
Q 019861          237 AGAAIHCWSS----PSTGVAEISRVLRPGGVFVGTT  268 (334)
Q Consensus       237 ~~~vl~h~~d----~~~~L~~i~r~LkpgG~lii~~  268 (334)
                      +...-.+.+.    ...+++.+++.|+|||++++..
T Consensus       156 ~D~~dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~~~  191 (283)
T PRK00811        156 VDSTDPVGPAEGLFTKEFYENCKRALKEDGIFVAQS  191 (283)
T ss_pred             ECCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEeC
Confidence            8653222221    1567899999999999988753

>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB

Probab=99.00  E-value=3.8e-09  Score=101.44  Aligned_cols=107  Identities=24%  Similarity=0.274  Sum_probs=84.0

Q ss_pred             HHHHHcccCCCCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCC---------------CC--C
Q 019861          166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES---------------NF--P  228 (334)
Q Consensus       166 ~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~---------------~~--~  228 (334)
                      ...+...+.+.++.+|||+|||+|..+..++...+.++++++|+++.+++.+++++...+               +.  +
T Consensus       227 s~~~~~~L~~~~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~~~~~~~  306 (426)
T TIGR00563       227 AQWVATWLAPQNEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDGRGPSQWAE  306 (426)
T ss_pred             HHHHHHHhCCCCCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecccccccccccc
Confidence            345556667778899999999999999999887545799999999999999988765321               11  3


Q ss_pred             CCCceEEEeC------ccccCCCC----------------HHHHHHHHHHcccCCcEEEEEEeccC
Q 019861          229 KDSIDAVHAG------AAIHCWSS----------------PSTGVAEISRVLRPGGVFVGTTYIVD  272 (334)
Q Consensus       229 ~~~fD~V~~~------~vl~h~~d----------------~~~~L~~i~r~LkpgG~lii~~~~~~  272 (334)
                      .++||.|++.      .++.+.++                ...+|.++.++|||||.++.++-...
T Consensus       307 ~~~fD~VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystcs~~  372 (426)
T TIGR00563       307 NEQFDRILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATCSVL  372 (426)
T ss_pred             ccccCEEEEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCC
Confidence            4679999963      45666554                25789999999999999999888764

The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.

>PRK10901 16S rRNA methyltransferase B; Provisional

Probab=98.99  E-value=9.7e-09  Score=98.63  Aligned_cols=104  Identities=24%  Similarity=0.320  Sum_probs=78.7

Q ss_pred             HHHcccCCCCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCC-----------C----CCCCCc
Q 019861          168 LMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES-----------N----FPKDSI  232 (334)
Q Consensus       168 ~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~-----------~----~~~~~f  232 (334)
                      .+...+.+.++.+|||+|||+|..+..++..++...++++|+++.+++.+++++...+           .    ++.++|
T Consensus       235 ~~~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~g~~~~~~~~D~~~~~~~~~~~~f  314 (427)
T PRK10901        235 LAATLLAPQNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRLGLKATVIVGDARDPAQWWDGQPF  314 (427)
T ss_pred             HHHHHcCCCCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEcCcccchhhcccCCC
Confidence            4445566777899999999999999999988655699999999999999998865421           0    234679


Q ss_pred             eEEEeCc------cccCCC------CH----------HHHHHHHHHcccCCcEEEEEEecc
Q 019861          233 DAVHAGA------AIHCWS------SP----------STGVAEISRVLRPGGVFVGTTYIV  271 (334)
Q Consensus       233 D~V~~~~------vl~h~~------d~----------~~~L~~i~r~LkpgG~lii~~~~~  271 (334)
                      |.|++..      ++.+-+      .+          ..+|+.+.+.|||||++++++-..
T Consensus       315 D~Vl~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystcs~  375 (427)
T PRK10901        315 DRILLDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATCSI  375 (427)
T ss_pred             CEEEECCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence            9999532      222211      22          368999999999999999988654

>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]

Probab=98.98  E-value=1.4e-09  Score=96.69  Aligned_cols=95  Identities=26%  Similarity=0.442  Sum_probs=77.7

Q ss_pred             CCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCC--------------------------CCCCC
Q 019861          177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES--------------------------NFPKD  230 (334)
Q Consensus       177 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~--------------------------~~~~~  230 (334)
                      ++..++|+|||-|.-+.-+-+++. ..++|+|+....++.|++++....                          ++++.
T Consensus       117 ~~~~~~~LgCGKGGDLlKw~kAgI-~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~~e~~dp  195 (389)
T KOG1975|consen  117 RGDDVLDLGCGKGGDLLKWDKAGI-GEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDLLEFKDP  195 (389)
T ss_pred             cccccceeccCCcccHhHhhhhcc-cceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHhccCCCC
Confidence            477899999999988888877764 589999999999999998765321                          23456


Q ss_pred             CceEEEeCccccCCC----CHHHHHHHHHHcccCCcEEEEEEeccC
Q 019861          231 SIDAVHAGAAIHCWS----SPSTGVAEISRVLRPGGVFVGTTYIVD  272 (334)
Q Consensus       231 ~fD~V~~~~vl~h~~----d~~~~L~~i~r~LkpgG~lii~~~~~~  272 (334)
                      +||+|-|.+++|.-=    ....+|+.+.+.|+|||+++-+.|+.+
T Consensus       196 ~fDivScQF~~HYaFetee~ar~~l~Nva~~LkpGG~FIgTiPdsd  241 (389)
T KOG1975|consen  196 RFDIVSCQFAFHYAFETEESARIALRNVAKCLKPGGVFIGTIPDSD  241 (389)
T ss_pred             CcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCcEEEEecCcHH
Confidence            699999999988642    234689999999999999999999874

>PRK01581 speE spermidine synthase; Validated

Probab=98.98  E-value=7.2e-09  Score=95.43  Aligned_cols=132  Identities=17%  Similarity=0.113  Sum_probs=89.0

Q ss_pred             CCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHH--Hh---c----CC-------------CCCCCCceEE
Q 019861          178 GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEF--VQ---Q----ES-------------NFPKDSIDAV  235 (334)
Q Consensus       178 ~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~--~~---~----~~-------------~~~~~~fD~V  235 (334)
                      +.+||+||||+|..+..+.+..+..+++++|+++.+++.|++.  +.   .    ..             ...++.||+|
T Consensus       151 PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~~~YDVI  230 (374)
T PRK01581        151 PKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPSSLYDVI  230 (374)
T ss_pred             CCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcCCCccEE
Confidence            5799999999999999888876556999999999999999962  11   0    00             1124689999


Q ss_pred             EeCccc--cC-CC--CHHHHHHHHHHcccCCcEEEEEEeccCCCCCchHHHHHHHHHhhhhcCccCCCCHHHHHHHHHhC
Q 019861          236 HAGAAI--HC-WS--SPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLCRAC  310 (334)
Q Consensus       236 ~~~~vl--~h-~~--d~~~~L~~i~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~l~~ll~~~  310 (334)
                      ++...-  .. ..  --..+++.+++.|+|||++++.....        +...   .           -...+.+.++++
T Consensus       231 IvDl~DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Qs~sp--------~~~~---~-----------~~~~i~~tL~~a  288 (374)
T PRK01581        231 IIDFPDPATELLSTLYTSELFARIATFLTEDGAFVCQSNSP--------ADAP---L-----------VYWSIGNTIEHA  288 (374)
T ss_pred             EEcCCCccccchhhhhHHHHHHHHHHhcCCCcEEEEecCCh--------hhhH---H-----------HHHHHHHHHHHh
Confidence            987321  00 00  01468999999999999988763221        1000   0           012367889999


Q ss_pred             CCcEEEEee-----cCcEEEEEEEcC
Q 019861          311 GLVDFKCTR-----NRGFVMFTATKP  331 (334)
Q Consensus       311 Gf~~v~~~~-----~g~~~~~~a~K~  331 (334)
                      ||.+.....     ++.|.+.+|.|.
T Consensus       289 f~~v~~y~t~vPsyg~~WgF~~as~~  314 (374)
T PRK01581        289 GLTVKSYHTIVPSFGTDWGFHIAANS  314 (374)
T ss_pred             CCceEEEEEecCCCCCceEEEEEeCC
Confidence            998776332     344777777663

>TIGR00417 speE spermidine synthase

Probab=98.98  E-value=1.5e-08  Score=91.36  Aligned_cols=90  Identities=13%  Similarity=0.183  Sum_probs=69.4

Q ss_pred             CCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCC------C-------------CCCCCceEEEeC
Q 019861          178 GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES------N-------------FPKDSIDAVHAG  238 (334)
Q Consensus       178 ~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~------~-------------~~~~~fD~V~~~  238 (334)
                      +.+||+||||+|.++..+.+..+..+++++|+++.+++.+++.+....      .             ..+++||+|++.
T Consensus        73 p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yDvIi~D  152 (270)
T TIGR00417        73 PKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFDVIIVD  152 (270)
T ss_pred             CCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCccEEEEe
Confidence            459999999999999988877645689999999999999998764311      0             014689999986


Q ss_pred             ccccCCC--C--HHHHHHHHHHcccCCcEEEEE
Q 019861          239 AAIHCWS--S--PSTGVAEISRVLRPGGVFVGT  267 (334)
Q Consensus       239 ~vl~h~~--d--~~~~L~~i~r~LkpgG~lii~  267 (334)
                      .....-+  +  ...+++.+++.|+|||++++.
T Consensus       153 ~~~~~~~~~~l~~~ef~~~~~~~L~pgG~lv~~  185 (270)
T TIGR00417       153 STDPVGPAETLFTKEFYELLKKALNEDGIFVAQ  185 (270)
T ss_pred             CCCCCCcccchhHHHHHHHHHHHhCCCcEEEEc
Confidence            5422111  1  357889999999999999986

the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.

>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=98.97  E-value=6.7e-09  Score=95.40  Aligned_cols=95  Identities=15%  Similarity=0.187  Sum_probs=72.1

Q ss_pred             HHHcccCCCCCCcEEEECCCcCHHHHHHHHcCC-CCeEEEEeCCHHHHHHHHHHHhcCC--------------CCCCCCc
Q 019861          168 LMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGL-FSLVVALDYSENMLKQCYEFVQQES--------------NFPKDSI  232 (334)
Q Consensus       168 ~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~-~~~v~giD~s~~~~~~a~~~~~~~~--------------~~~~~~f  232 (334)
                      .+.+.+...++.+|||||||+|.++..+++... ...|+++|+++.+++.|++++...+              ....++|
T Consensus        71 ~ll~~L~i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~nV~~i~gD~~~~~~~~~~f  150 (322)
T PRK13943         71 LFMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIENVIFVCGDGYYGVPEFAPY  150 (322)
T ss_pred             HHHHhcCCCCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCChhhcccccCCc
Confidence            444555666788999999999999999988653 2479999999999999998765321              1123579


Q ss_pred             eEEEeCccccCCCCHHHHHHHHHHcccCCcEEEEEE
Q 019861          233 DAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTT  268 (334)
Q Consensus       233 D~V~~~~vl~h~~d~~~~L~~i~r~LkpgG~lii~~  268 (334)
                      |+|++...+++++      ..+.+.|+|||++++..
T Consensus       151 D~Ii~~~g~~~ip------~~~~~~LkpgG~Lvv~~  180 (322)
T PRK13943        151 DVIFVTVGVDEVP------ETWFTQLKEGGRVIVPI  180 (322)
T ss_pred             cEEEECCchHHhH------HHHHHhcCCCCEEEEEe
Confidence            9999987766542      34678999999988854

>PRK04457 spermidine synthase; Provisional

Probab=98.95  E-value=9.9e-09  Score=92.03  Aligned_cols=94  Identities=11%  Similarity=0.116  Sum_probs=72.7

Q ss_pred             CCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCC---C-------------CCCCCceEEEeCcc
Q 019861          177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES---N-------------FPKDSIDAVHAGAA  240 (334)
Q Consensus       177 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~---~-------------~~~~~fD~V~~~~v  240 (334)
                      ++.+|||||||+|.++..++...+..+++++|+++.+++.|++.+....   .             -..++||+|++...
T Consensus        66 ~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~~~~yD~I~~D~~  145 (262)
T PRK04457         66 RPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAVHRHSTDVILVDGF  145 (262)
T ss_pred             CCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHhCCCCCCEEEEeCC
Confidence            4678999999999999999988877899999999999999998865321   0             11357999998531


Q ss_pred             c-cCCC---CHHHHHHHHHHcccCCcEEEEEEec
Q 019861          241 I-HCWS---SPSTGVAEISRVLRPGGVFVGTTYI  270 (334)
Q Consensus       241 l-~h~~---d~~~~L~~i~r~LkpgG~lii~~~~  270 (334)
                      - ...+   ....+++++++.|+|||++++....
T Consensus       146 ~~~~~~~~l~t~efl~~~~~~L~pgGvlvin~~~  179 (262)
T PRK04457        146 DGEGIIDALCTQPFFDDCRNALSSDGIFVVNLWS  179 (262)
T ss_pred             CCCCCccccCcHHHHHHHHHhcCCCcEEEEEcCC
Confidence            1 1111   1258999999999999999986543

>TIGR00438 rrmJ cell division protein FtsJ

Probab=98.95  E-value=3.7e-09  Score=90.20  Aligned_cols=101  Identities=21%  Similarity=0.243  Sum_probs=68.7

Q ss_pred             HHHHcccCCCCCCcEEEECCCcCHHHHHHHHcC-CCCeEEEEeCCHHHHHHHHHHHh---cC---C--------CCCCCC
Q 019861          167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSG-LFSLVVALDYSENMLKQCYEFVQ---QE---S--------NFPKDS  231 (334)
Q Consensus       167 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~~v~giD~s~~~~~~a~~~~~---~~---~--------~~~~~~  231 (334)
                      +....+....++.+|||+|||+|.++..++... ...+++|+|+++.+ . . ..+.   .+   .        .+++++
T Consensus        22 ~~~~~~~~i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~-~-~-~~i~~~~~d~~~~~~~~~l~~~~~~~~   98 (188)
T TIGR00438        22 QLNQKFKLIKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK-P-I-ENVDFIRGDFTDEEVLNKIRERVGDDK   98 (188)
T ss_pred             HHHHHhcccCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc-c-C-CCceEEEeeCCChhHHHHHHHHhCCCC
Confidence            344444455668899999999999999888774 34579999999854 0 0 0000   00   0        134568


Q ss_pred             ceEEEeCccc--------cCCC---CHHHHHHHHHHcccCCcEEEEEEec
Q 019861          232 IDAVHAGAAI--------HCWS---SPSTGVAEISRVLRPGGVFVGTTYI  270 (334)
Q Consensus       232 fD~V~~~~vl--------~h~~---d~~~~L~~i~r~LkpgG~lii~~~~  270 (334)
                      ||+|++....        +|..   +...+|+.+.++|+|||++++..+.
T Consensus        99 ~D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~~~  148 (188)
T TIGR00438        99 VDVVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKVFQ  148 (188)
T ss_pred             ccEEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEEcc
Confidence            9999986432        2211   1257899999999999999997544

>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length

Probab=98.92  E-value=6.1e-08  Score=85.78  Aligned_cols=153  Identities=14%  Similarity=0.138  Sum_probs=109.6

Q ss_pred             CCCCCcEEEECCCcCHHHHHHHHcCCC--CeEEEEeCCHHHHHHHHHHHhcCC-----------CCC-------CCCceE
Q 019861          175 PVLGGNIIDASCGSGLFSRIFAKSGLF--SLVVALDYSENMLKQCYEFVQQES-----------NFP-------KDSIDA  234 (334)
Q Consensus       175 ~~~~~~vLDiGcG~G~~~~~l~~~~~~--~~v~giD~s~~~~~~a~~~~~~~~-----------~~~-------~~~fD~  234 (334)
                      ...+-+||||.||.|..........+.  .++.-.|+++..++..++.++..+           .|.       +...++
T Consensus       133 ~g~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~~~l~~l~p~P~l  212 (311)
T PF12147_consen  133 QGRPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFDRDSLAALDPAPTL  212 (311)
T ss_pred             cCCceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCHhHhhccCCCCCE
Confidence            345679999999999988877777654  689999999999999998766532           111       345799


Q ss_pred             EEeCccccCCCCHH---HHHHHHHHcccCCcEEEEEEeccCCCCCchHHHHHHHHH-hhhhcCccCCCCHHHHHHHHHhC
Q 019861          235 VHAGAAIHCWSSPS---TGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQN-MMQISGSYTFLSEREIEDLCRAC  310 (334)
Q Consensus       235 V~~~~vl~h~~d~~---~~L~~i~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~t~~~l~~ll~~~  310 (334)
                      ++.+.++|.++|-.   ..|+.+.+.|.|||.++.+...+.   +...+..+.-.. -.......+..|..++.++.+.+
T Consensus       213 ~iVsGL~ElF~Dn~lv~~sl~gl~~al~pgG~lIyTgQPwH---PQle~IAr~LtsHr~g~~WvMRrRsq~EmD~Lv~~a  289 (311)
T PF12147_consen  213 AIVSGLYELFPDNDLVRRSLAGLARALEPGGYLIYTGQPWH---PQLEMIARVLTSHRDGKAWVMRRRSQAEMDQLVEAA  289 (311)
T ss_pred             EEEecchhhCCcHHHHHHHHHHHHHHhCCCcEEEEcCCCCC---cchHHHHHHHhcccCCCceEEEecCHHHHHHHHHHc
Confidence            99999999999853   578999999999999988654322   222222221111 01011234567999999999999


Q ss_pred             CCcEEE--EeecCcEEEEEEEc
Q 019861          311 GLVDFK--CTRNRGFVMFTATK  330 (334)
Q Consensus       311 Gf~~v~--~~~~g~~~~~~a~K  330 (334)
                      ||+.++  +-..|.|.|-.|+|
T Consensus       290 GF~K~~q~ID~~GIFTVSlA~r  311 (311)
T PF12147_consen  290 GFEKIDQRIDEWGIFTVSLARR  311 (311)
T ss_pred             CCchhhheeccCCceEEEeecC
Confidence            998766  34567787777765

It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.

>PRK14901 16S rRNA methyltransferase B; Provisional

Probab=98.91  E-value=1.1e-08  Score=98.43  Aligned_cols=107  Identities=22%  Similarity=0.234  Sum_probs=81.4

Q ss_pred             HHHHHHcccCCCCCCcEEEECCCcCHHHHHHHHcC-CCCeEEEEeCCHHHHHHHHHHHhcCC--------------C---
Q 019861          165 EFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSG-LFSLVVALDYSENMLKQCYEFVQQES--------------N---  226 (334)
Q Consensus       165 ~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~~v~giD~s~~~~~~a~~~~~~~~--------------~---  226 (334)
                      ....+...+.+.++.+|||+|||+|..+..++... ..++++++|+++.+++.+++++...+              +   
T Consensus       240 ~s~l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~~v~~~~~D~~~~~~~~  319 (434)
T PRK14901        240 SAQLVAPLLDPQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLKSIKILAADSRNLLELK  319 (434)
T ss_pred             HHHHHHHHhCCCCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCeEEEEeCChhhccccc
Confidence            33445556677778999999999999999888763 34689999999999999988765322              1   


Q ss_pred             -CCCCCceEEEeC------ccccCCCC----------------HHHHHHHHHHcccCCcEEEEEEecc
Q 019861          227 -FPKDSIDAVHAG------AAIHCWSS----------------PSTGVAEISRVLRPGGVFVGTTYIV  271 (334)
Q Consensus       227 -~~~~~fD~V~~~------~vl~h~~d----------------~~~~L~~i~r~LkpgG~lii~~~~~  271 (334)
                       ...++||.|++.      .++.+-++                ...+|.++.++|||||+++.++-..
T Consensus       320 ~~~~~~fD~Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystcsi  387 (434)
T PRK14901        320 PQWRGYFDRILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATCTL  387 (434)
T ss_pred             ccccccCCEEEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence             224689999973      35555444                2477999999999999999877654

>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein

Probab=98.88  E-value=1.3e-08  Score=86.47  Aligned_cols=129  Identities=11%  Similarity=0.169  Sum_probs=92.5

Q ss_pred             CcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCCCC---CCCCceEEEeCccccCCCCHH---HHHH
Q 019861          179 GNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNF---PKDSIDAVHAGAAIHCWSSPS---TGVA  252 (334)
Q Consensus       179 ~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~---~~~~fD~V~~~~vl~h~~d~~---~~L~  252 (334)
                      .++|||||=+......  ..+. ..|+.||+++..-...+.-+-. .|+   ++++||+|.++-||+++++|.   .+|+
T Consensus        53 lrlLEVGals~~N~~s--~~~~-fdvt~IDLns~~~~I~qqDFm~-rplp~~~~e~FdvIs~SLVLNfVP~p~~RG~Ml~  128 (219)
T PF11968_consen   53 LRLLEVGALSTDNACS--TSGW-FDVTRIDLNSQHPGILQQDFME-RPLPKNESEKFDVISLSLVLNFVPDPKQRGEMLR  128 (219)
T ss_pred             ceEEeecccCCCCccc--ccCc-eeeEEeecCCCCCCceeecccc-CCCCCCcccceeEEEEEEEEeeCCCHHHHHHHHH
Confidence            6999999976544332  2232 3699999987432222211111 123   467999999999999999996   7999


Q ss_pred             HHHHcccCCcE-----EEEEEeccCCCCCchHHHHHHHHHhhhhcCccCCCCHHHHHHHHHhCCCcEEEEeecCcEEEEE
Q 019861          253 EISRVLRPGGV-----FVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLCRACGLVDFKCTRNRGFVMFT  327 (334)
Q Consensus       253 ~i~r~LkpgG~-----lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~l~~ll~~~Gf~~v~~~~~g~~~~~~  327 (334)
                      .+.+.|+|+|.     ++++.|..-                   ....+|++.+.|.++++..||..++.........+.
T Consensus       129 r~~~fL~~~g~~~~~~LFlVlP~~C-------------------v~NSRy~~~~~l~~im~~LGf~~~~~~~~~Kl~y~l  189 (219)
T PF11968_consen  129 RAHKFLKPPGLSLFPSLFLVLPLPC-------------------VTNSRYMTEERLREIMESLGFTRVKYKKSKKLAYWL  189 (219)
T ss_pred             HHHHHhCCCCccCcceEEEEeCchH-------------------hhcccccCHHHHHHHHHhCCcEEEEEEecCeEEEEE
Confidence            99999999999     888887631                   125678999999999999999999876555433333


Q ss_pred             EEc
Q 019861          328 ATK  330 (334)
Q Consensus       328 a~K  330 (334)
                      .+|
T Consensus       190 ~r~  192 (219)
T PF11968_consen  190 FRK  192 (219)
T ss_pred             Eee
Confidence            333

>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2

Probab=98.88  E-value=1.1e-08  Score=87.52  Aligned_cols=87  Identities=22%  Similarity=0.359  Sum_probs=69.4

Q ss_pred             cEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCC-----------------CCCCCCceEEEeCcccc
Q 019861          180 NIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES-----------------NFPKDSIDAVHAGAAIH  242 (334)
Q Consensus       180 ~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~-----------------~~~~~~fD~V~~~~vl~  242 (334)
                      .+||||||.|.++..++...|+..++|+|+....+..+.++.....                 -++++++|.|...+   
T Consensus        20 l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~l~Nv~~~~~da~~~l~~~~~~~~v~~i~i~F---   96 (195)
T PF02390_consen   20 LILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRGLKNVRFLRGDARELLRRLFPPGSVDRIYINF---   96 (195)
T ss_dssp             EEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHTTSSEEEEES-CTTHHHHHSTTTSEEEEEEES---
T ss_pred             eEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhcccceEEEEccHHHHHhhcccCCchheEEEeC---
Confidence            8999999999999999999999999999999999988887655322                 14568999998765   


Q ss_pred             CCCCH-------------HHHHHHHHHcccCCcEEEEEEecc
Q 019861          243 CWSSP-------------STGVAEISRVLRPGGVFVGTTYIV  271 (334)
Q Consensus       243 h~~d~-------------~~~L~~i~r~LkpgG~lii~~~~~  271 (334)
                        |||             ..+|..+.++|+|||.+.+.+-..
T Consensus        97 --PDPWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~TD~~  136 (195)
T PF02390_consen   97 --PDPWPKKRHHKRRLVNPEFLELLARVLKPGGELYFATDVE  136 (195)
T ss_dssp             -------SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEES-H
T ss_pred             --CCCCcccchhhhhcCCchHHHHHHHHcCCCCEEEEEeCCH
Confidence              555             478999999999999999977654

1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....

>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT)

Probab=98.85  E-value=7.7e-08  Score=85.60  Aligned_cols=130  Identities=21%  Similarity=0.177  Sum_probs=95.8

Q ss_pred             CCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhc---CC--------------------------C-
Q 019861          177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQ---ES--------------------------N-  226 (334)
Q Consensus       177 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~---~~--------------------------~-  226 (334)
                      ...+||--|||-|+++..++..|.  .+.|.|.|--|+-...-.+..   ..                          | 
T Consensus        56 ~~~~VLVPGsGLGRLa~Eia~~G~--~~~gnE~S~~Mll~s~fiLn~~~~~~~~~I~Pf~~~~sn~~~~~dqlr~v~iPD  133 (270)
T PF07942_consen   56 SKIRVLVPGSGLGRLAWEIAKLGY--AVQGNEFSYFMLLASNFILNHCSQPNQFTIYPFVHSFSNQKSREDQLRPVRIPD  133 (270)
T ss_pred             CccEEEEcCCCcchHHHHHhhccc--eEEEEEchHHHHHHHHHHHcccCCCCcEEEecceecccCCCCHHHhCCceEeCC
Confidence            456999999999999999999987  999999999887654432221   00                          0 


Q ss_pred             -----------------------C-C---CCCceEEEeCccccCCCCHHHHHHHHHHcccCCcEEEEEEeccCCCCCchH
Q 019861          227 -----------------------F-P---KDSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIP  279 (334)
Q Consensus       227 -----------------------~-~---~~~fD~V~~~~vl~h~~d~~~~L~~i~r~LkpgG~lii~~~~~~~~~~~~~  279 (334)
                                             + +   .++||+|+..+.|.-.+|....|+.|.++|||||..+=.-|..-...... 
T Consensus       134 v~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~FFIDTA~Ni~~Yi~tI~~lLkpgG~WIN~GPLlyh~~~~~-  212 (270)
T PF07942_consen  134 VDPSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTCFFIDTAENIIEYIETIEHLLKPGGYWINFGPLLYHFEPMS-  212 (270)
T ss_pred             cCcccccCCCCceeEecCccEEecCCcccCCcccEEEEEEEeechHHHHHHHHHHHHHhccCCEEEecCCccccCCCCC-
Confidence                                   0 1   26899999999999888999999999999999997776555443221100 


Q ss_pred             HHHHHHHHhhhhcCccCCCCHHHHHHHHHhCCCcEEEEee
Q 019861          280 FSRLLRQNMMQISGSYTFLSEREIEDLCRACGLVDFKCTR  319 (334)
Q Consensus       280 ~~~~~~~~~~~~~~~~~~~t~~~l~~ll~~~Gf~~v~~~~  319 (334)
                                ...+..--++.+++.++++..||++++...
T Consensus       213 ----------~~~~~sveLs~eEi~~l~~~~GF~~~~~~~  242 (270)
T PF07942_consen  213 ----------IPNEMSVELSLEEIKELIEKLGFEIEKEES  242 (270)
T ss_pred             ----------CCCCcccCCCHHHHHHHHHHCCCEEEEEEE
Confidence                      000112357899999999999999887443

This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].

>PRK14903 16S rRNA methyltransferase B; Provisional

Probab=98.83  E-value=3.1e-08  Score=95.09  Aligned_cols=106  Identities=14%  Similarity=0.200  Sum_probs=79.3

Q ss_pred             HHHHcccCCCCCCcEEEECCCcCHHHHHHHHcC-CCCeEEEEeCCHHHHHHHHHHHhcCC------------C---CCCC
Q 019861          167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSG-LFSLVVALDYSENMLKQCYEFVQQES------------N---FPKD  230 (334)
Q Consensus       167 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~~v~giD~s~~~~~~a~~~~~~~~------------~---~~~~  230 (334)
                      ..+...+.+.++.+|||+|||+|..+..++... ...+++++|+++.+++.+++++...+            .   +.++
T Consensus       227 ~~~~~~l~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~~v~~~~~Da~~l~~~~~~  306 (431)
T PRK14903        227 QIVPLLMELEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLSSIEIKIADAERLTEYVQD  306 (431)
T ss_pred             HHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhhhhhhhhc
Confidence            344455677778999999999999998888763 34699999999999999998866432            1   2256


Q ss_pred             CceEEEeC------ccccCCCC----------------HHHHHHHHHHcccCCcEEEEEEeccC
Q 019861          231 SIDAVHAG------AAIHCWSS----------------PSTGVAEISRVLRPGGVFVGTTYIVD  272 (334)
Q Consensus       231 ~fD~V~~~------~vl~h~~d----------------~~~~L~~i~r~LkpgG~lii~~~~~~  272 (334)
                      +||.|++.      .++.+-++                ...+|.++.+.|||||.++.++-...
T Consensus       307 ~fD~Vl~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~~  370 (431)
T PRK14903        307 TFDRILVDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCTVT  370 (431)
T ss_pred             cCCEEEECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCC
Confidence            89999973      22322221                14568999999999999999888754

>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase

Probab=98.82  E-value=4.3e-08  Score=88.11  Aligned_cols=102  Identities=19%  Similarity=0.163  Sum_probs=75.3

Q ss_pred             cccCCCCCCcEEEECCCcCHHHHHHHHcC-CCCeEEEEeCCHHHHHHHHHHHhcCC--------------CCCCCCceEE
Q 019861          171 GYLKPVLGGNIIDASCGSGLFSRIFAKSG-LFSLVVALDYSENMLKQCYEFVQQES--------------NFPKDSIDAV  235 (334)
Q Consensus       171 ~~l~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~~v~giD~s~~~~~~a~~~~~~~~--------------~~~~~~fD~V  235 (334)
                      ..+.+.++.+|||+|||+|..+..++... ..+.++++|+++.+++.+++++....              +...+.||.|
T Consensus        65 ~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~~fD~V  144 (264)
T TIGR00446        65 LALEPDPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVLNVAVTNFDGRVFGAAVPKFDAI  144 (264)
T ss_pred             HHhCCCCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEecCCHHHhhhhccCCCEE
Confidence            34566678899999999999998887763 23589999999999999998765432              1123569999


Q ss_pred             EeC------ccccCCCC----------------HHHHHHHHHHcccCCcEEEEEEeccC
Q 019861          236 HAG------AAIHCWSS----------------PSTGVAEISRVLRPGGVFVGTTYIVD  272 (334)
Q Consensus       236 ~~~------~vl~h~~d----------------~~~~L~~i~r~LkpgG~lii~~~~~~  272 (334)
                      ++.      .++.+-++                ...+|+.+.+.|||||+++.++-...
T Consensus       145 l~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstcs~~  203 (264)
T TIGR00446       145 LLDAPCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTCSLE  203 (264)
T ss_pred             EEcCCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCC
Confidence            973      22322221                13589999999999999998876543

>KOG2940 consensus Predicted methyltransferase [General function prediction only]

Probab=98.82  E-value=5.1e-09  Score=88.91  Aligned_cols=138  Identities=20%  Similarity=0.298  Sum_probs=102.3

Q ss_pred             CCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHh------------cCCCCCCCCceEEEeCccccCCC
Q 019861          178 GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQ------------QESNFPKDSIDAVHAGAAIHCWS  245 (334)
Q Consensus       178 ~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~------------~~~~~~~~~fD~V~~~~vl~h~~  245 (334)
                      -..++||||+-|.....+...+ -.+++-+|.|..|++.++..-.            +..+|.++++|+|+++..+|+..
T Consensus        73 fp~a~diGcs~G~v~rhl~~e~-vekli~~DtS~~M~~s~~~~qdp~i~~~~~v~DEE~Ldf~ens~DLiisSlslHW~N  151 (325)
T KOG2940|consen   73 FPTAFDIGCSLGAVKRHLRGEG-VEKLIMMDTSYDMIKSCRDAQDPSIETSYFVGDEEFLDFKENSVDLIISSLSLHWTN  151 (325)
T ss_pred             CcceeecccchhhhhHHHHhcc-hhheeeeecchHHHHHhhccCCCceEEEEEecchhcccccccchhhhhhhhhhhhhc
Confidence            3589999999999999999987 4589999999999999986411            12368899999999999999999


Q ss_pred             CHHHHHHHHHHcccCCcEEEEEEeccCCCCCchHHHHHH-HHHhhhhcCccCCC-CHHHHHHHHHhCCCcEEE
Q 019861          246 SPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLL-RQNMMQISGSYTFL-SEREIEDLCRACGLVDFK  316 (334)
Q Consensus       246 d~~~~L~~i~r~LkpgG~lii~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-t~~~l~~ll~~~Gf~~v~  316 (334)
                      |...-+.+++..|||+|.++.+....+......-.+... -....+...|...| -..++-.+|.++||....
T Consensus       152 dLPg~m~~ck~~lKPDg~FiasmlggdTLyELR~slqLAelER~GGiSphiSPf~qvrDiG~LL~rAGF~m~t  224 (325)
T KOG2940|consen  152 DLPGSMIQCKLALKPDGLFIASMLGGDTLYELRCSLQLAELEREGGISPHISPFTQVRDIGNLLTRAGFSMLT  224 (325)
T ss_pred             cCchHHHHHHHhcCCCccchhHHhccccHHHHHHHhhHHHHHhccCCCCCcChhhhhhhhhhHHhhcCcccce
Confidence            988999999999999999998877765321111111100 01111223354443 458899999999997654

>PLN02366 spermidine synthase

Probab=98.82  E-value=1.2e-07  Score=86.71  Aligned_cols=92  Identities=17%  Similarity=0.244  Sum_probs=70.1

Q ss_pred             CCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcC-----C---------------CCCCCCceEEE
Q 019861          177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQE-----S---------------NFPKDSIDAVH  236 (334)
Q Consensus       177 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~-----~---------------~~~~~~fD~V~  236 (334)
                      .+++||+||||.|..+..+.+.....+++.+|+++.+++.+++.+...     .               ..++++||+|+
T Consensus        91 ~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~yDvIi  170 (308)
T PLN02366         91 NPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTYDAII  170 (308)
T ss_pred             CCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCCCEEE
Confidence            367999999999999999988743458999999999999999976431     0               12246899999


Q ss_pred             eCccccCCCC----HHHHHHHHHHcccCCcEEEEEE
Q 019861          237 AGAAIHCWSS----PSTGVAEISRVLRPGGVFVGTT  268 (334)
Q Consensus       237 ~~~vl~h~~d----~~~~L~~i~r~LkpgG~lii~~  268 (334)
                      +...-.+.+.    ...+++.+++.|+|||+++...
T Consensus       171 ~D~~dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~q~  206 (308)
T PLN02366        171 VDSSDPVGPAQELFEKPFFESVARALRPGGVVCTQA  206 (308)
T ss_pred             EcCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEECc
Confidence            8654322221    1368999999999999987643

>PRK14902 16S rRNA methyltransferase B; Provisional

Probab=98.82  E-value=3.3e-08  Score=95.53  Aligned_cols=105  Identities=24%  Similarity=0.257  Sum_probs=77.2

Q ss_pred             HHHHcccCCCCCCcEEEECCCcCHHHHHHHHcC-CCCeEEEEeCCHHHHHHHHHHHhcCC------------CCC---CC
Q 019861          167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSG-LFSLVVALDYSENMLKQCYEFVQQES------------NFP---KD  230 (334)
Q Consensus       167 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~~v~giD~s~~~~~~a~~~~~~~~------------~~~---~~  230 (334)
                      ..+...+...++.+|||+|||+|..+..+++.. +.++++++|+++.+++.+++++...+            .+.   .+
T Consensus       240 ~lv~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~~  319 (444)
T PRK14902        240 MLVAPALDPKGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLTNIETKALDARKVHEKFAE  319 (444)
T ss_pred             HHHHHHhCCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCCcccccchhcc
Confidence            344556666678899999999999999988763 45699999999999999998765322            111   26


Q ss_pred             CceEEEeCc------cccCCCC----------------HHHHHHHHHHcccCCcEEEEEEecc
Q 019861          231 SIDAVHAGA------AIHCWSS----------------PSTGVAEISRVLRPGGVFVGTTYIV  271 (334)
Q Consensus       231 ~fD~V~~~~------vl~h~~d----------------~~~~L~~i~r~LkpgG~lii~~~~~  271 (334)
                      +||+|++..      ++.+-++                ...+|+.+.++|||||.++.++-..
T Consensus       320 ~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvystcs~  382 (444)
T PRK14902        320 KFDKILVDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYSTCTI  382 (444)
T ss_pred             cCCEEEEcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCCC
Confidence            799999742      2222221                1357999999999999999776544

>PRK14904 16S rRNA methyltransferase B; Provisional

Probab=98.79  E-value=5.6e-08  Score=93.91  Aligned_cols=105  Identities=20%  Similarity=0.244  Sum_probs=77.0

Q ss_pred             HHHcccCCCCCCcEEEECCCcCHHHHHHHHcC-CCCeEEEEeCCHHHHHHHHHHHhcCC-------------CCCCCCce
Q 019861          168 LMKGYLKPVLGGNIIDASCGSGLFSRIFAKSG-LFSLVVALDYSENMLKQCYEFVQQES-------------NFPKDSID  233 (334)
Q Consensus       168 ~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~~v~giD~s~~~~~~a~~~~~~~~-------------~~~~~~fD  233 (334)
                      .....+...++.+|||+|||+|..+..+++.. ...+++++|+++.+++.+++++...+             ..++++||
T Consensus       241 l~~~~l~~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~v~~~~~Da~~~~~~~~fD  320 (445)
T PRK14904        241 LACLLLNPQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGITIIETIEGDARSFSPEEQPD  320 (445)
T ss_pred             HHHHhcCCCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCCCeEEEEeCcccccccCCCCC
Confidence            34445566678899999999999888887653 23589999999999999998765422             12356799


Q ss_pred             EEEeC------ccccCCC------C----------HHHHHHHHHHcccCCcEEEEEEeccC
Q 019861          234 AVHAG------AAIHCWS------S----------PSTGVAEISRVLRPGGVFVGTTYIVD  272 (334)
Q Consensus       234 ~V~~~------~vl~h~~------d----------~~~~L~~i~r~LkpgG~lii~~~~~~  272 (334)
                      +|++.      .++..-+      +          ...+|.++.+.|+|||+++.++-...
T Consensus       321 ~Vl~D~Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystcs~~  381 (445)
T PRK14904        321 AILLDAPCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATCSIE  381 (445)
T ss_pred             EEEEcCCCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCC
Confidence            99963      1221111      1          23589999999999999999887764

>PLN02781 Probable caffeoyl-CoA O-methyltransferase

Probab=98.79  E-value=6.3e-08  Score=85.41  Aligned_cols=101  Identities=14%  Similarity=0.135  Sum_probs=75.2

Q ss_pred             HHHcccCCCCCCcEEEECCCcCHHHHHHHHc-CCCCeEEEEeCCHHHHHHHHHHHhcCCC--------------------
Q 019861          168 LMKGYLKPVLGGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQQESN--------------------  226 (334)
Q Consensus       168 ~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~~v~giD~s~~~~~~a~~~~~~~~~--------------------  226 (334)
                      .+...+...++++|||||||+|..+..++.. ...++++++|+++.+++.|++++...+-                    
T Consensus        59 ~L~~l~~~~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~~l~~  138 (234)
T PLN02781         59 FLSMLVKIMNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALDQLLN  138 (234)
T ss_pred             HHHHHHHHhCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHh
Confidence            3434444455789999999999988888765 3357999999999999999998764321                    


Q ss_pred             -CCCCCceEEEeCccccCCCCHHHHHHHHHHcccCCcEEEEEEecc
Q 019861          227 -FPKDSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIV  271 (334)
Q Consensus       227 -~~~~~fD~V~~~~vl~h~~d~~~~L~~i~r~LkpgG~lii~~~~~  271 (334)
                       .+.++||+|+....=   ++....+..+.+.|+|||.+++....+
T Consensus       139 ~~~~~~fD~VfiDa~k---~~y~~~~~~~~~ll~~GG~ii~dn~l~  181 (234)
T PLN02781        139 NDPKPEFDFAFVDADK---PNYVHFHEQLLKLVKVGGIIAFDNTLW  181 (234)
T ss_pred             CCCCCCCCEEEECCCH---HHHHHHHHHHHHhcCCCeEEEEEcCCc
Confidence             114689999886431   234577899999999999988865544

>PRK03612 spermidine synthase; Provisional

Probab=98.79  E-value=5.4e-08  Score=95.60  Aligned_cols=132  Identities=15%  Similarity=0.053  Sum_probs=87.8

Q ss_pred             CCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHH--Hhc-------CC-------------CCCCCCceE
Q 019861          177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEF--VQQ-------ES-------------NFPKDSIDA  234 (334)
Q Consensus       177 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~--~~~-------~~-------------~~~~~~fD~  234 (334)
                      ++++|||||||+|..+..+.+.....+++++|+++++++.++++  +..       +.             ...+++||+
T Consensus       297 ~~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~fDv  376 (521)
T PRK03612        297 RPRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEKFDV  376 (521)
T ss_pred             CCCeEEEEcCCccHHHHHHHhCCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCCCCE
Confidence            46799999999999999988764336999999999999999983  211       11             012468999


Q ss_pred             EEeCccccCCCCH-----HHHHHHHHHcccCCcEEEEEEeccCCCCCchHHHHHHHHHhhhhcCccCCCCHHHHHHHHHh
Q 019861          235 VHAGAAIHCWSSP-----STGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLCRA  309 (334)
Q Consensus       235 V~~~~vl~h~~d~-----~~~L~~i~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~l~~ll~~  309 (334)
                      |++...-...+.+     ..+++.+++.|+|||++++......        .              +.-...++.+.+++
T Consensus       377 Ii~D~~~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~~~~~~--------~--------------~~~~~~~i~~~l~~  434 (521)
T PRK03612        377 IIVDLPDPSNPALGKLYSVEFYRLLKRRLAPDGLLVVQSTSPY--------F--------------APKAFWSIEATLEA  434 (521)
T ss_pred             EEEeCCCCCCcchhccchHHHHHHHHHhcCCCeEEEEecCCcc--------c--------------chHHHHHHHHHHHH
Confidence            9997543322221     3588999999999999988653211        0              00012367888999


Q ss_pred             CCCcEEEEe----ecCcEEEEEEEc
Q 019861          310 CGLVDFKCT----RNRGFVMFTATK  330 (334)
Q Consensus       310 ~Gf~~v~~~----~~g~~~~~~a~K  330 (334)
                      .||.+....    +.|.|....+.|
T Consensus       435 ~gf~v~~~~~~vps~g~w~f~~as~  459 (521)
T PRK03612        435 AGLATTPYHVNVPSFGEWGFVLAGA  459 (521)
T ss_pred             cCCEEEEEEeCCCCcchhHHHeeeC
Confidence            999433311    224444555544

>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases

Probab=98.79  E-value=6.6e-09  Score=98.17  Aligned_cols=107  Identities=23%  Similarity=0.362  Sum_probs=78.2

Q ss_pred             HHHHHHHHcccCC----CCCCcEEEECCCcCHHHHHHHHcCCCCeEEEE---eCCHHHHHHHHHHH---------hcCCC
Q 019861          163 EKEFELMKGYLKP----VLGGNIIDASCGSGLFSRIFAKSGLFSLVVAL---DYSENMLKQCYEFV---------QQESN  226 (334)
Q Consensus       163 ~~~~~~l~~~l~~----~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gi---D~s~~~~~~a~~~~---------~~~~~  226 (334)
                      ....+.|.+.++.    ..-..+||||||+|.|+..|.+.+-  ....+   |-.+..++.|.++-         ....|
T Consensus        99 ~~Yid~i~~~~~~~~~~g~iR~~LDvGcG~aSF~a~l~~r~V--~t~s~a~~d~~~~qvqfaleRGvpa~~~~~~s~rLP  176 (506)
T PF03141_consen   99 DHYIDQIAEMIPLIKWGGGIRTALDVGCGVASFGAYLLERNV--TTMSFAPNDEHEAQVQFALERGVPAMIGVLGSQRLP  176 (506)
T ss_pred             HHHHHHHHHHhhccccCCceEEEEeccceeehhHHHHhhCCc--eEEEcccccCCchhhhhhhhcCcchhhhhhcccccc
Confidence            3445555555544    2224789999999999999999863  33333   44456677776641         23458


Q ss_pred             CCCCCceEEEeCccccCCC-CHHHHHHHHHHcccCCcEEEEEEecc
Q 019861          227 FPKDSIDAVHAGAAIHCWS-SPSTGVAEISRVLRPGGVFVGTTYIV  271 (334)
Q Consensus       227 ~~~~~fD~V~~~~vl~h~~-d~~~~L~~i~r~LkpgG~lii~~~~~  271 (334)
                      |++++||+|+|...+..+. +-..+|-++.|+|+|||+++++.+-.
T Consensus       177 fp~~~fDmvHcsrc~i~W~~~~g~~l~evdRvLRpGGyfv~S~ppv  222 (506)
T PF03141_consen  177 FPSNAFDMVHCSRCLIPWHPNDGFLLFEVDRVLRPGGYFVLSGPPV  222 (506)
T ss_pred             CCccchhhhhcccccccchhcccceeehhhhhhccCceEEecCCcc
Confidence            9999999999999987765 33568899999999999999987754

; GO: 0008168 methyltransferase activity

>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]

Probab=98.77  E-value=7.9e-08  Score=83.78  Aligned_cols=88  Identities=18%  Similarity=0.219  Sum_probs=74.0

Q ss_pred             CcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCC-----------------CCCCCCceEEEeCccc
Q 019861          179 GNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES-----------------NFPKDSIDAVHAGAAI  241 (334)
Q Consensus       179 ~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~-----------------~~~~~~fD~V~~~~vl  241 (334)
                      ..+||||||.|.++..+++..|...++|||+....+..+.+++....                 -+++++.|-|..++  
T Consensus        50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~l~Nlri~~~DA~~~l~~~~~~~sl~~I~i~F--  127 (227)
T COG0220          50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELGLKNLRLLCGDAVEVLDYLIPDGSLDKIYINF--  127 (227)
T ss_pred             cEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHhcCCCCCeeEEEEEC--
Confidence            58999999999999999999999999999999998888887765432                 13456999998775  


Q ss_pred             cCCCCH-------------HHHHHHHHHcccCCcEEEEEEecc
Q 019861          242 HCWSSP-------------STGVAEISRVLRPGGVFVGTTYIV  271 (334)
Q Consensus       242 ~h~~d~-------------~~~L~~i~r~LkpgG~lii~~~~~  271 (334)
                         |||             ..+|+.+.++|+|||.+.+.+-+.
T Consensus       128 ---PDPWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~aTD~~  167 (227)
T COG0220         128 ---PDPWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFATDNE  167 (227)
T ss_pred             ---CCCCCCccccccccCCHHHHHHHHHHccCCCEEEEEecCH
Confidence               555             478999999999999999987654

>smart00650 rADc Ribosomal RNA adenine dimethylases

Probab=98.73  E-value=1.8e-07  Score=78.39  Aligned_cols=99  Identities=11%  Similarity=0.081  Sum_probs=69.9

Q ss_pred             HHHcccCCCCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCC------------CCCCCCceEE
Q 019861          168 LMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES------------NFPKDSIDAV  235 (334)
Q Consensus       168 ~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~------------~~~~~~fD~V  235 (334)
                      .+.+.+...++.+|||+|||+|.++..+++.+.  +++++|+++.+++.+++++....            ++++..||.|
T Consensus         4 ~i~~~~~~~~~~~vLEiG~G~G~lt~~l~~~~~--~v~~vE~~~~~~~~~~~~~~~~~~v~ii~~D~~~~~~~~~~~d~v   81 (169)
T smart00650        4 KIVRAANLRPGDTVLEIGPGKGALTEELLERAA--RVTAIEIDPRLAPRLREKFAAADNLTVIHGDALKFDLPKLQPYKV   81 (169)
T ss_pred             HHHHhcCCCCcCEEEEECCCccHHHHHHHhcCC--eEEEEECCHHHHHHHHHHhccCCCEEEEECchhcCCccccCCCEE
Confidence            445556666678999999999999999998854  99999999999999998865321            2344568999


Q ss_pred             EeCccccCCCCHHHHHHHHHHc--ccCCcEEEEEEecc
Q 019861          236 HAGAAIHCWSSPSTGVAEISRV--LRPGGVFVGTTYIV  271 (334)
Q Consensus       236 ~~~~vl~h~~d~~~~L~~i~r~--LkpgG~lii~~~~~  271 (334)
                      +++-- .|+.  ...+..+.+.  +.++|.+++.....
T Consensus        82 i~n~P-y~~~--~~~i~~~l~~~~~~~~~~l~~q~e~a  116 (169)
T smart00650       82 VGNLP-YNIS--TPILFKLLEEPPAFRDAVLMVQKEVA  116 (169)
T ss_pred             EECCC-cccH--HHHHHHHHhcCCCcceEEEEEEHHHh
Confidence            88643 3332  3344444443  34778887755443

>COG2521 Predicted archaeal methyltransferase [General function prediction only]

Probab=98.71  E-value=1.5e-07  Score=80.36  Aligned_cols=130  Identities=18%  Similarity=0.193  Sum_probs=93.7

Q ss_pred             cccCCCCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHH-----Hhc-------------CCCCCCCCc
Q 019861          171 GYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEF-----VQQ-------------ESNFPKDSI  232 (334)
Q Consensus       171 ~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~-----~~~-------------~~~~~~~~f  232 (334)
                      ..++...+.+|||...|-|+++....++|. .+|+-++.++..++.|+-+     +..             -..|+|.+|
T Consensus       128 ~~V~~~~G~rVLDtC~GLGYtAi~a~~rGA-~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~e~V~~~~D~sf  206 (287)
T COG2521         128 ELVKVKRGERVLDTCTGLGYTAIEALERGA-IHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAYEVVKDFDDESF  206 (287)
T ss_pred             heeccccCCEeeeeccCccHHHHHHHHcCC-cEEEEEeeCCCeEEeeccCCCCccccccccEEecccHHHHHhcCCcccc
Confidence            345566789999999999999999999984 5899999999988887632     110             125889999


Q ss_pred             eEEEeC---ccccCCCCHHHHHHHHHHcccCCcEEEEEEeccCCCCCchHHHHHHHHHhhhhcCccCCC-CHHHHHHHHH
Q 019861          233 DAVHAG---AAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFL-SEREIEDLCR  308 (334)
Q Consensus       233 D~V~~~---~vl~h~~d~~~~L~~i~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-t~~~l~~ll~  308 (334)
                      |+|+..   +++.-----..+-++++|+|+|||.++-.+-+...-                    ++-. -...+.+.|+
T Consensus       207 DaIiHDPPRfS~AgeLYseefY~El~RiLkrgGrlFHYvG~Pg~r--------------------yrG~d~~~gVa~RLr  266 (287)
T COG2521         207 DAIIHDPPRFSLAGELYSEEFYRELYRILKRGGRLFHYVGNPGKR--------------------YRGLDLPKGVAERLR  266 (287)
T ss_pred             ceEeeCCCccchhhhHhHHHHHHHHHHHcCcCCcEEEEeCCCCcc--------------------cccCChhHHHHHHHH
Confidence            999863   221110123578999999999999999877664310                    1111 2467889999


Q ss_pred             hCCCcEEEEeecC
Q 019861          309 ACGLVDFKCTRNR  321 (334)
Q Consensus       309 ~~Gf~~v~~~~~g  321 (334)
                      ++||++++.....
T Consensus       267 ~vGF~~v~~~~~~  279 (287)
T COG2521         267 RVGFEVVKKVREA  279 (287)
T ss_pred             hcCceeeeeehhc
Confidence            9999988765443

>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional

Probab=98.70  E-value=2e-07  Score=94.74  Aligned_cols=92  Identities=16%  Similarity=0.216  Sum_probs=70.0

Q ss_pred             CCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCCC---------------C--CCCCceEEEeCc
Q 019861          177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESN---------------F--PKDSIDAVHAGA  239 (334)
Q Consensus       177 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~---------------~--~~~~fD~V~~~~  239 (334)
                      ++.+|||+|||+|.++..++..|. .+|+++|+|+.+++.+++++.....               +  ..++||+|++.-
T Consensus       538 ~g~rVLDlf~gtG~~sl~aa~~Ga-~~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~l~~~~~~fDlIilDP  616 (702)
T PRK11783        538 KGKDFLNLFAYTGTASVHAALGGA-KSTTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAWLKEAREQFDLIFIDP  616 (702)
T ss_pred             CCCeEEEcCCCCCHHHHHHHHCCC-CEEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHHHHHcCCCcCEEEECC
Confidence            368999999999999999998763 4799999999999999998753210               0  145899999841


Q ss_pred             -----------cccCCCCHHHHHHHHHHcccCCcEEEEEEe
Q 019861          240 -----------AIHCWSSPSTGVAEISRVLRPGGVFVGTTY  269 (334)
Q Consensus       240 -----------vl~h~~d~~~~L~~i~r~LkpgG~lii~~~  269 (334)
                                 +.....+...++..+.++|+|||.+++...
T Consensus       617 P~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~~  657 (702)
T PRK11783        617 PTFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSNN  657 (702)
T ss_pred             CCCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEeC
Confidence                       111122345678889999999999887543

>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional

Probab=98.65  E-value=3.1e-07  Score=87.00  Aligned_cols=92  Identities=16%  Similarity=0.213  Sum_probs=66.2

Q ss_pred             CCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCC----C--------------C--CCCCceEEE
Q 019861          177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES----N--------------F--PKDSIDAVH  236 (334)
Q Consensus       177 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~----~--------------~--~~~~fD~V~  236 (334)
                      ++.+|||+|||+|.++..++..+ ..+++++|+|+.+++.+++++....    .              +  ..++||+|+
T Consensus       220 ~g~rVLDlfsgtG~~~l~aa~~g-a~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~~~~~fDlVi  298 (396)
T PRK15128        220 ENKRVLNCFSYTGGFAVSALMGG-CSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIV  298 (396)
T ss_pred             CCCeEEEeccCCCHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHHhcCCCCCEEE
Confidence            36899999999999987766554 3589999999999999998865321    0              1  135899999


Q ss_pred             eCccc--c-------CCCCHHHHHHHHHHcccCCcEEEEEEe
Q 019861          237 AGAAI--H-------CWSSPSTGVAEISRVLRPGGVFVGTTY  269 (334)
Q Consensus       237 ~~~vl--~-------h~~d~~~~L~~i~r~LkpgG~lii~~~  269 (334)
                      +.-=-  .       ...+...++..+.++|+|||.+++..-
T Consensus       299 lDPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~sc  340 (396)
T PRK15128        299 MDPPKFVENKSQLMGACRGYKDINMLAIQLLNPGGILLTFSC  340 (396)
T ss_pred             ECCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence            86211  0       001223455677899999999987654

>PHA03412 putative methyltransferase; Provisional

Probab=98.64  E-value=3.9e-07  Score=79.29  Aligned_cols=143  Identities=14%  Similarity=0.110  Sum_probs=85.4

Q ss_pred             cCCCCcHHHHHHHHcccCCCCCCcEEEECCCcCHHHHHHHHcC---CCCeEEEEeCCHHHHHHHHHHHhcCC--------
Q 019861          157 GGFPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSG---LFSLVVALDYSENMLKQCYEFVQQES--------  225 (334)
Q Consensus       157 ~~~~~~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~---~~~~v~giD~s~~~~~~a~~~~~~~~--------  225 (334)
                      +.|.-|......+...  ...+.+|||+|||+|.++..++...   +..+++++|+++.+++.|+++.....        
T Consensus        31 GqFfTP~~iAr~~~i~--~~~~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~~~~~~~~~D~~~  108 (241)
T PHA03412         31 GAFFTPIGLARDFTID--ACTSGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIVPEATWINADALT  108 (241)
T ss_pred             CccCCCHHHHHHHHHh--ccCCCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhccCCEEEEcchhc
Confidence            4455566655554322  2236799999999999999888752   24589999999999999998753211        


Q ss_pred             CCCCCCceEEEeCcc---cc--CC-----C-C-HHHHHHHHHHcccCCcEEEEEEeccCCCCCchHHHHHHHHHhhhhcC
Q 019861          226 NFPKDSIDAVHAGAA---IH--CW-----S-S-PSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISG  293 (334)
Q Consensus       226 ~~~~~~fD~V~~~~v---l~--h~-----~-d-~~~~L~~i~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~  293 (334)
                      ...+++||+|+++==   +.  +.     . . ...+++.+.+++++|+ +++  |..     ..++.    .....+..
T Consensus       109 ~~~~~~FDlIIsNPPY~~~~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~-~IL--P~~-----~~~~~----y~~~~~~~  176 (241)
T PHA03412        109 TEFDTLFDMAISNPPFGKIKTSDFKGKYTGAEFEYKVIERASQIARQGT-FII--PQM-----SANFR----YSGTHYFR  176 (241)
T ss_pred             ccccCCccEEEECCCCCCccccccCCcccccHHHHHHHHHHHHHcCCCE-EEe--Ccc-----cccCc----ccCcccee
Confidence            112468999999621   11  11     0 1 3468888888666666 433  211     11110    00000000


Q ss_pred             ccCCCCHHHHHHHHHhCCCc
Q 019861          294 SYTFLSEREIEDLCRACGLV  313 (334)
Q Consensus       294 ~~~~~t~~~l~~ll~~~Gf~  313 (334)
                      ...-.+.....+++++-|+.
T Consensus       177 ~~~~~~~~~~~~~~~~~~~~  196 (241)
T PHA03412        177 QDESTTSSKCKKFLDETGLE  196 (241)
T ss_pred             eccCcccHHHHHHHHhcCee
Confidence            11224567788888888874

>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed

Probab=98.64  E-value=4.2e-07  Score=87.80  Aligned_cols=100  Identities=19%  Similarity=0.298  Sum_probs=71.8

Q ss_pred             HHHHHHHcccCCCCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCC------------------
Q 019861          164 KEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES------------------  225 (334)
Q Consensus       164 ~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~------------------  225 (334)
                      .+.+.+.+++...++.+|||+|||+|.++..++..+.  +++|+|+|+.+++.|+++.....                  
T Consensus       284 ~l~~~vl~~l~~~~~~~VLDlgcGtG~~sl~la~~~~--~V~gvD~s~~al~~A~~n~~~~~~~~v~~~~~d~~~~l~~~  361 (443)
T PRK13168        284 KMVARALEWLDPQPGDRVLDLFCGLGNFTLPLARQAA--EVVGVEGVEAMVERARENARRNGLDNVTFYHANLEEDFTDQ  361 (443)
T ss_pred             HHHHHHHHHhcCCCCCEEEEEeccCCHHHHHHHHhCC--EEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeChHHhhhhh
Confidence            4455566666666678999999999999999998864  99999999999999998764321                  


Q ss_pred             CCCCCCceEEEeCccccCCCCHHHHHHHHHHcccCCcEEEEEEe
Q 019861          226 NFPKDSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTY  269 (334)
Q Consensus       226 ~~~~~~fD~V~~~~vl~h~~d~~~~L~~i~r~LkpgG~lii~~~  269 (334)
                      ++.+++||+|++.---.   .....++.+.+ ++|++.++++..
T Consensus       362 ~~~~~~fD~Vi~dPPr~---g~~~~~~~l~~-~~~~~ivyvSCn  401 (443)
T PRK13168        362 PWALGGFDKVLLDPPRA---GAAEVMQALAK-LGPKRIVYVSCN  401 (443)
T ss_pred             hhhcCCCCEEEECcCCc---ChHHHHHHHHh-cCCCeEEEEEeC
Confidence            12245799998742111   12244555555 688898888653

>PLN02672 methionine S-methyltransferase

Probab=98.64  E-value=5e-07  Score=94.21  Aligned_cols=115  Identities=17%  Similarity=0.141  Sum_probs=83.2

Q ss_pred             CCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcC-------------------C----------CCC
Q 019861          178 GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQE-------------------S----------NFP  228 (334)
Q Consensus       178 ~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~-------------------~----------~~~  228 (334)
                      +.+|||+|||+|..+..++...+..+++|+|+|+.+++.|+++....                   .          .+.
T Consensus       119 ~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~~  198 (1082)
T PLN02672        119 DKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYCR  198 (1082)
T ss_pred             CCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhhhcc
Confidence            46899999999999999999887679999999999999998876531                   0          122


Q ss_pred             C--CCceEEEeC--c------------cccCC--------------------CCH----HHHHHHHHHcccCCcEEEEEE
Q 019861          229 K--DSIDAVHAG--A------------AIHCW--------------------SSP----STGVAEISRVLRPGGVFVGTT  268 (334)
Q Consensus       229 ~--~~fD~V~~~--~------------vl~h~--------------------~d~----~~~L~~i~r~LkpgG~lii~~  268 (334)
                      +  ..||+|+++  +            |.+|-                    .|-    ..++.++.++|+|||.+++..
T Consensus       199 ~~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dGL~~yr~i~~~a~~~L~pgG~l~lEi  278 (1082)
T PLN02672        199 DNNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGISVIKPMGIMIFNM  278 (1082)
T ss_pred             ccCCceEEEEECCCcCCCcchhhcChhhhhccccccccccCccccccCCCCCCcHHHHHHHHHHHHHHhccCCCEEEEEE
Confidence            2  269999986  1            22111                    111    467788888999999988855


Q ss_pred             eccCCCCCchHHHHHHHHHhhhhcCccCCCCHHHHH-HHHHhCCCcEEEEee
Q 019861          269 YIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIE-DLCRACGLVDFKCTR  319 (334)
Q Consensus       269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~l~-~ll~~~Gf~~v~~~~  319 (334)
                      ...                           ..+.+. +++++.||+.+..+.
T Consensus       279 G~~---------------------------q~~~v~~~l~~~~gf~~~~~~~  303 (1082)
T PLN02672        279 GGR---------------------------PGQAVCERLFERRGFRITKLWQ  303 (1082)
T ss_pred             Ccc---------------------------HHHHHHHHHHHHCCCCeeEEee
Confidence            432                           244666 588888887766443

>COG4122 Predicted O-methyltransferase [General function prediction only]

Probab=98.63  E-value=3.3e-07  Score=79.10  Aligned_cols=104  Identities=16%  Similarity=0.179  Sum_probs=81.1

Q ss_pred             HHHHcccCCCCCCcEEEECCCcCHHHHHHHHcCC-CCeEEEEeCCHHHHHHHHHHHhcCC------------------CC
Q 019861          167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGL-FSLVVALDYSENMLKQCYEFVQQES------------------NF  227 (334)
Q Consensus       167 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~-~~~v~giD~s~~~~~~a~~~~~~~~------------------~~  227 (334)
                      ..+...+....+++|||||.+.|+.+.+++...+ +.+++.+|+++++.+.|++++...+                  ..
T Consensus        49 ~~L~~L~~~~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~l~~~  128 (219)
T COG4122          49 ALLRLLARLSGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDALDVLSRL  128 (219)
T ss_pred             HHHHHHHHhcCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHHHHHHhc
Confidence            3344444445678999999999999999999876 7899999999999999999877543                  12


Q ss_pred             CCCCceEEEeCccccCCCCHHHHHHHHHHcccCCcEEEEEEeccCC
Q 019861          228 PKDSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDG  273 (334)
Q Consensus       228 ~~~~fD~V~~~~vl~h~~d~~~~L~~i~r~LkpgG~lii~~~~~~~  273 (334)
                      ..++||+|+....=   .+...++..+.+.|+|||.+++-.....+
T Consensus       129 ~~~~fDliFIDadK---~~yp~~le~~~~lLr~GGliv~DNvl~~G  171 (219)
T COG4122         129 LDGSFDLVFIDADK---ADYPEYLERALPLLRPGGLIVADNVLFGG  171 (219)
T ss_pred             cCCCccEEEEeCCh---hhCHHHHHHHHHHhCCCcEEEEeecccCC
Confidence            35899999976531   14467899999999999999886665543

>KOG2904 consensus Predicted methyltransferase [General function prediction only]

Probab=98.62  E-value=2.6e-07  Score=80.72  Aligned_cols=109  Identities=21%  Similarity=0.129  Sum_probs=79.4

Q ss_pred             HHHHHHHHcccCCC---CCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCC--------------
Q 019861          163 EKEFELMKGYLKPV---LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES--------------  225 (334)
Q Consensus       163 ~~~~~~l~~~l~~~---~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~--------------  225 (334)
                      ++..+.+.+.++..   .+..|||+|||+|..+..+....+.+.++++|.|+.++..|.++.....              
T Consensus       131 EE~V~~Vid~~~~~~~~~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~v~~~~me~  210 (328)
T KOG2904|consen  131 EEWVEAVIDALNNSEHSKHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQRLKLSGRIEVIHNIMES  210 (328)
T ss_pred             HHHHHHHHHHHhhhhhcccceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHHHHHHhhcCceEEEeccccc
Confidence            45555555555332   3457999999999999999999888999999999999999998755321              


Q ss_pred             ------CCCCCCceEEEeCc--cc----cCC--------------------CCHHHHHHHHHHcccCCcEEEEEEecc
Q 019861          226 ------NFPKDSIDAVHAGA--AI----HCW--------------------SSPSTGVAEISRVLRPGGVFVGTTYIV  271 (334)
Q Consensus       226 ------~~~~~~fD~V~~~~--vl----~h~--------------------~d~~~~L~~i~r~LkpgG~lii~~~~~  271 (334)
                            +..++++|+++++=  +.    ..+                    .....++.-+.|.|+|||.+.+.....
T Consensus       211 d~~~~~~l~~~~~dllvsNPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~~le~~~~  288 (328)
T KOG2904|consen  211 DASDEHPLLEGKIDLLVSNPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGFEQLELVER  288 (328)
T ss_pred             ccccccccccCceeEEecCCCcccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcccCCeEEEEeccc
Confidence                  34568999999862  11    100                    111245677889999999999987754

>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases

Probab=98.61  E-value=2.1e-07  Score=78.23  Aligned_cols=96  Identities=21%  Similarity=0.188  Sum_probs=69.4

Q ss_pred             CCCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCC----------------C-----CCCCCce
Q 019861          175 PVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES----------------N-----FPKDSID  233 (334)
Q Consensus       175 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~----------------~-----~~~~~fD  233 (334)
                      ...+.+|||+|||+|..+..++......+|+..|.++ .++..+.++....                +     ....+||
T Consensus        43 ~~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~-~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~~~~~~D  121 (173)
T PF10294_consen   43 LFRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNE-VLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLLEPHSFD  121 (173)
T ss_dssp             GTTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S--HHHHHHHHHHTT--------EEEE--TTS-HHHHHHS-SSBS
T ss_pred             hcCCceEEEECCccchhHHHHHhccCCceEEEeccch-hhHHHHHHHHhccccccccccCcEEEecCcccccccccccCC
Confidence            3457899999999999999998883346999999998 8888887765432                0     2245899


Q ss_pred             EEEeCccccCCCCHHHHHHHHHHcccCCcEEEEEEecc
Q 019861          234 AVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIV  271 (334)
Q Consensus       234 ~V~~~~vl~h~~d~~~~L~~i~r~LkpgG~lii~~~~~  271 (334)
                      +|++..++..-.....+++-+.++|+++|.+++....+
T Consensus       122 ~IlasDv~Y~~~~~~~L~~tl~~ll~~~~~vl~~~~~R  159 (173)
T PF10294_consen  122 VILASDVLYDEELFEPLVRTLKRLLKPNGKVLLAYKRR  159 (173)
T ss_dssp             EEEEES--S-GGGHHHHHHHHHHHBTT-TTEEEEEE-S
T ss_pred             EEEEecccchHHHHHHHHHHHHHHhCCCCEEEEEeCEe
Confidence            99999999987677789999999999999988877765

They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.

>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=98.61  E-value=9.9e-08  Score=81.52  Aligned_cols=91  Identities=18%  Similarity=0.281  Sum_probs=61.3

Q ss_pred             CCCcEEEECCCcCH----HHHHHHHc-----CCCCeEEEEeCCHHHHHHHHHH------Hh-------------cCC---
Q 019861          177 LGGNIIDASCGSGL----FSRIFAKS-----GLFSLVVALDYSENMLKQCYEF------VQ-------------QES---  225 (334)
Q Consensus       177 ~~~~vLDiGcG~G~----~~~~l~~~-----~~~~~v~giD~s~~~~~~a~~~------~~-------------~~~---  225 (334)
                      +.-+|+.+||++|.    ++..+.+.     ....+++|+|+|+.+++.|++-      +.             ...   
T Consensus        31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~  110 (196)
T PF01739_consen   31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGY  110 (196)
T ss_dssp             S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCT
T ss_pred             CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCce
Confidence            45699999999994    34444441     2246899999999999999852      00             000   


Q ss_pred             --------------------CCCCCCceEEEeCccccCCCCH--HHHHHHHHHcccCCcEEEEE
Q 019861          226 --------------------NFPKDSIDAVHAGAAIHCWSSP--STGVAEISRVLRPGGVFVGT  267 (334)
Q Consensus       226 --------------------~~~~~~fD~V~~~~vl~h~~d~--~~~L~~i~r~LkpgG~lii~  267 (334)
                                          +.+.+.||+|+|.+||-++.+.  ..+++.+++.|+|||+|++.
T Consensus       111 ~v~~~lr~~V~F~~~NL~~~~~~~~~fD~I~CRNVlIYF~~~~~~~vl~~l~~~L~pgG~L~lG  174 (196)
T PF01739_consen  111 RVKPELRKMVRFRRHNLLDPDPPFGRFDLIFCRNVLIYFDPETQQRVLRRLHRSLKPGGYLFLG  174 (196)
T ss_dssp             TE-HHHHTTEEEEE--TT-S------EEEEEE-SSGGGS-HHHHHHHHHHHGGGEEEEEEEEE-
T ss_pred             eEChHHcCceEEEecccCCCCcccCCccEEEecCEEEEeCHHHHHHHHHHHHHHcCCCCEEEEe
Confidence                                1235789999999999999865  58999999999999999983

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.

>PRK11727 23S rRNA mA1618 methyltransferase; Provisional

Probab=98.59  E-value=1.9e-06  Score=79.05  Aligned_cols=136  Identities=10%  Similarity=0.115  Sum_probs=81.6

Q ss_pred             CCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCC-C--------------------CCCCCceEE
Q 019861          177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES-N--------------------FPKDSIDAV  235 (334)
Q Consensus       177 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~-~--------------------~~~~~fD~V  235 (334)
                      .+.++||||||+|.....++...+..+++|+|+++.+++.|++++.... -                    .+++.||+|
T Consensus       114 ~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~~~i~~~i~~~~~~fDli  193 (321)
T PRK11727        114 ANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANPGLNGAIRLRLQKDSKAIFKGIIHKNERFDAT  193 (321)
T ss_pred             CCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhccCCcCcEEEEEccchhhhhhcccccCCceEEE
Confidence            4679999999999888777776556699999999999999998876541 0                    124589999


Q ss_pred             EeCccccCCCC-----HHHHHHH----------------HHHcccCCcEEEEEEeccCCCCCchHHHHHHHHHhhhhcCc
Q 019861          236 HAGAAIHCWSS-----PSTGVAE----------------ISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGS  294 (334)
Q Consensus       236 ~~~~vl~h~~d-----~~~~L~~----------------i~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~  294 (334)
                      +|+==++--.+     ...-.+.                ..+++.+||.+-+..+.....   ..+... ..++...  .
T Consensus       194 vcNPPf~~s~~ea~~~~~rk~r~~ar~~~~~~~l~f~g~~~EL~~~GGe~~fi~~mi~eS---~~~~~~-~gwftsm--v  267 (321)
T PRK11727        194 LCNPPFHASAAEARAGSQRKLRNLGLNKDKKKVLNFGGQQAELWCEGGEVAFIKRMIEES---KAFAKQ-VLWFTSL--V  267 (321)
T ss_pred             EeCCCCcCcchhhccchhhHHhhhhccCCCccccCCcchhhheeeCCcEeeeehHhhHHH---HHHHhh-CcEEEEE--e
Confidence            99732221111     1111222                234455677765544433210   000000 0011111  1


Q ss_pred             cCCCCHHHHHHHHHhCCCcEEEEe
Q 019861          295 YTFLSEREIEDLCRACGLVDFKCT  318 (334)
Q Consensus       295 ~~~~t~~~l~~ll~~~Gf~~v~~~  318 (334)
                      ...-+.+.+.+.|++.|...+.+.
T Consensus       268 ~kk~~l~~l~~~L~~~~~~~~~~~  291 (321)
T PRK11727        268 SKKENLPPLYRALKKVGAVEVKTI  291 (321)
T ss_pred             eccCCHHHHHHHHHHcCCceEEEE
Confidence            123378999999999999666543

>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA

Probab=98.58  E-value=1.2e-06  Score=84.56  Aligned_cols=98  Identities=15%  Similarity=0.189  Sum_probs=68.5

Q ss_pred             HHHHHHcccCCCCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCC------------------C
Q 019861          165 EFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES------------------N  226 (334)
Q Consensus       165 ~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~------------------~  226 (334)
                      +.+.+.+++...++.+|||+|||+|.++..+++...  +|+|+|+++.+++.|++++....                  .
T Consensus       280 l~~~~~~~l~~~~~~~vLDl~cG~G~~sl~la~~~~--~V~~vE~~~~av~~a~~n~~~~~~~nv~~~~~d~~~~l~~~~  357 (431)
T TIGR00479       280 LVDRALEALELQGEELVVDAYCGVGTFTLPLAKQAK--SVVGIEVVPESVEKAQQNAELNGIANVEFLAGTLETVLPKQP  357 (431)
T ss_pred             HHHHHHHHhccCCCCEEEEcCCCcCHHHHHHHHhCC--EEEEEEcCHHHHHHHHHHHHHhCCCceEEEeCCHHHHHHHHH
Confidence            445556666655678999999999999999998765  89999999999999998765321                  0


Q ss_pred             CCCCCceEEEeCccccCCCCHHHHHHHHHHcccCCcEEEEE
Q 019861          227 FPKDSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGT  267 (334)
Q Consensus       227 ~~~~~fD~V~~~~vl~h~~d~~~~L~~i~r~LkpgG~lii~  267 (334)
                      +.+++||+|++.--=.  .-...+++.+.+ |+|++.++++
T Consensus       358 ~~~~~~D~vi~dPPr~--G~~~~~l~~l~~-l~~~~ivyvs  395 (431)
T TIGR00479       358 WAGQIPDVLLLDPPRK--GCAAEVLRTIIE-LKPERIVYVS  395 (431)
T ss_pred             hcCCCCCEEEECcCCC--CCCHHHHHHHHh-cCCCEEEEEc
Confidence            1234688888642210  112455666554 7888877764

This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.

>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=98.57  E-value=1.9e-07  Score=82.62  Aligned_cols=143  Identities=17%  Similarity=0.276  Sum_probs=88.8

Q ss_pred             CCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCC------------------------------
Q 019861          176 VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES------------------------------  225 (334)
Q Consensus       176 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~------------------------------  225 (334)
                      .++.++||||||.-..- .+...-...+++..|+.+..++..++-+....                              
T Consensus        55 ~~g~~llDiGsGPtiy~-~lsa~~~f~~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~~lEg~~~~~~e~e~~lR~  133 (256)
T PF01234_consen   55 VKGETLLDIGSGPTIYQ-LLSACEWFEEIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVCELEGKREKWEEKEEKLRR  133 (256)
T ss_dssp             S-EEEEEEES-TT--GG-GTTGGGTEEEEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHHHHTTSSSGHHHHHHHHHH
T ss_pred             cCCCEEEEeCCCcHHHh-hhhHHHhhcceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHHhccCCcchhhhHHHHHHH
Confidence            35679999999985432 22222223489999999988876665333211                              


Q ss_pred             --------------CCCC-----CCceEEEeCccccCCC-CH---HHHHHHHHHcccCCcEEEEEEeccCCCCCchHHHH
Q 019861          226 --------------NFPK-----DSIDAVHAGAAIHCWS-SP---STGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSR  282 (334)
Q Consensus       226 --------------~~~~-----~~fD~V~~~~vl~h~~-d~---~~~L~~i~r~LkpgG~lii~~~~~~~~~~~~~~~~  282 (334)
                                    ++..     ..||+|++...||... |.   ..+++++.++|||||.|++...........     
T Consensus       134 ~Vk~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Lil~~~l~~t~Y~v-----  208 (256)
T PF01234_consen  134 AVKQVVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHLILAGVLGSTYYMV-----  208 (256)
T ss_dssp             HEEEEEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEEEEESS-SEEEE-----
T ss_pred             hhceEEEeeccCCCCCCccccCccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEEEEEEcCceeEEE-----
Confidence                          2322     2599999999999775 44   478999999999999999977755321000     


Q ss_pred             HHHHHhhhhcCccCCCCHHHHHHHHHhCCCcEEEEee------cCcEEEEEEEc
Q 019861          283 LLRQNMMQISGSYTFLSEREIEDLCRACGLVDFKCTR------NRGFVMFTATK  330 (334)
Q Consensus       283 ~~~~~~~~~~~~~~~~t~~~l~~ll~~~Gf~~v~~~~------~g~~~~~~a~K  330 (334)
                            ....-..-..+.+.+++.++++||.+.+...      ......++|+|
T Consensus       209 ------G~~~F~~l~l~ee~v~~al~~aG~~i~~~~~~~~~~d~~~~~f~~a~K  256 (256)
T PF01234_consen  209 ------GGHKFPCLPLNEEFVREALEEAGFDIEDLEKQSKVSDYEGMFFLVARK  256 (256)
T ss_dssp             ------TTEEEE---B-HHHHHHHHHHTTEEEEEEEG-TTTB---EEEEEEEEE
T ss_pred             ------CCEecccccCCHHHHHHHHHHcCCEEEecccccCcCCCCcEEEEEEeC
Confidence                  0000122357899999999999998887543      12345555655

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....

>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases

Probab=98.56  E-value=4.4e-07  Score=78.17  Aligned_cols=93  Identities=13%  Similarity=0.125  Sum_probs=72.8

Q ss_pred             CCCCcEEEECCCcCHHHHHHHHcCC-CCeEEEEeCCHHHHHHHHHHHhcCC---------------------CCCCCCce
Q 019861          176 VLGGNIIDASCGSGLFSRIFAKSGL-FSLVVALDYSENMLKQCYEFVQQES---------------------NFPKDSID  233 (334)
Q Consensus       176 ~~~~~vLDiGcG~G~~~~~l~~~~~-~~~v~giD~s~~~~~~a~~~~~~~~---------------------~~~~~~fD  233 (334)
                      ...++|||||+++|+.+.+++...+ .++++.+|+++...+.|++.+...+                     ..+.+.||
T Consensus        44 ~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~l~~l~~~~~~~~fD  123 (205)
T PF01596_consen   44 TRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALEVLPELANDGEEGQFD  123 (205)
T ss_dssp             HT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHHHHHHHHHTTTTTSEE
T ss_pred             cCCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHhhHHHHHhccCCCcee
Confidence            3467999999999999999998754 5799999999999999998876432                     01235899


Q ss_pred             EEEeCccccCCCCHHHHHHHHHHcccCCcEEEEEEecc
Q 019861          234 AVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIV  271 (334)
Q Consensus       234 ~V~~~~vl~h~~d~~~~L~~i~r~LkpgG~lii~~~~~  271 (334)
                      +|+....=   .+....+..+.+.|+|||.+++-....
T Consensus       124 ~VFiDa~K---~~y~~y~~~~~~ll~~ggvii~DN~l~  158 (205)
T PF01596_consen  124 FVFIDADK---RNYLEYFEKALPLLRPGGVIIADNVLW  158 (205)
T ss_dssp             EEEEESTG---GGHHHHHHHHHHHEEEEEEEEEETTTG
T ss_pred             EEEEcccc---cchhhHHHHHhhhccCCeEEEEccccc
Confidence            99987632   245677888999999999988855543

The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....

>PLN02476 O-methyltransferase

Probab=98.54  E-value=1.1e-06  Score=78.74  Aligned_cols=103  Identities=17%  Similarity=0.102  Sum_probs=77.0

Q ss_pred             HHHHcccCCCCCCcEEEECCCcCHHHHHHHHcC-CCCeEEEEeCCHHHHHHHHHHHhcCCC-----------------C-
Q 019861          167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSG-LFSLVVALDYSENMLKQCYEFVQQESN-----------------F-  227 (334)
Q Consensus       167 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~~v~giD~s~~~~~~a~~~~~~~~~-----------------~-  227 (334)
                      ..+...+...++++|||||+++|..+.+++... +.+.++.+|.++...+.|+++++..+-                 + 
T Consensus       108 ~lL~~L~~~~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~L~~l~  187 (278)
T PLN02476        108 QLLAMLVQILGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAESLKSMI  187 (278)
T ss_pred             HHHHHHHHhcCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHH
Confidence            334444444557899999999999999998763 356899999999999999998765431                 1 


Q ss_pred             ---CCCCceEEEeCccccCCCCHHHHHHHHHHcccCCcEEEEEEeccC
Q 019861          228 ---PKDSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVD  272 (334)
Q Consensus       228 ---~~~~fD~V~~~~vl~h~~d~~~~L~~i~r~LkpgG~lii~~~~~~  272 (334)
                         ..++||+|+...-   -.+....++.+.+.|+|||.+++-...+.
T Consensus       188 ~~~~~~~FD~VFIDa~---K~~Y~~y~e~~l~lL~~GGvIV~DNvL~~  232 (278)
T PLN02476        188 QNGEGSSYDFAFVDAD---KRMYQDYFELLLQLVRVGGVIVMDNVLWH  232 (278)
T ss_pred             hcccCCCCCEEEECCC---HHHHHHHHHHHHHhcCCCcEEEEecCccC
Confidence               1358999998753   12446788999999999999888555443

>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional

Probab=98.51  E-value=2.3e-06  Score=73.40  Aligned_cols=104  Identities=12%  Similarity=0.120  Sum_probs=68.2

Q ss_pred             HHHHHHcccCC-CCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCCC-------------C--C
Q 019861          165 EFELMKGYLKP-VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESN-------------F--P  228 (334)
Q Consensus       165 ~~~~l~~~l~~-~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~-------------~--~  228 (334)
                      ..+.+...+.. .++.+|||+|||+|.++..+...+. .+++++|.++.+++.+++++.....             +  .
T Consensus        40 v~e~l~~~l~~~~~~~~vLDl~~GsG~l~l~~lsr~a-~~V~~vE~~~~a~~~a~~Nl~~~~~~~v~~~~~D~~~~l~~~  118 (199)
T PRK10909         40 VRETLFNWLAPVIVDARCLDCFAGSGALGLEALSRYA-AGATLLEMDRAVAQQLIKNLATLKAGNARVVNTNALSFLAQP  118 (199)
T ss_pred             HHHHHHHHHhhhcCCCEEEEcCCCccHHHHHHHHcCC-CEEEEEECCHHHHHHHHHHHHHhCCCcEEEEEchHHHHHhhc
Confidence            33344444422 3467999999999999987655553 5999999999999999987654320             1  1


Q ss_pred             CCCceEEEeCccccCCCCHHHHHHHHHHc--ccCCcEEEEEEec
Q 019861          229 KDSIDAVHAGAAIHCWSSPSTGVAEISRV--LRPGGVFVGTTYI  270 (334)
Q Consensus       229 ~~~fD~V~~~~vl~h~~d~~~~L~~i~r~--LkpgG~lii~~~~  270 (334)
                      .++||+|++.==.. -.-...+++.+...  |+|+|.++++...
T Consensus       119 ~~~fDlV~~DPPy~-~g~~~~~l~~l~~~~~l~~~~iv~ve~~~  161 (199)
T PRK10909        119 GTPHNVVFVDPPFR-KGLLEETINLLEDNGWLADEALIYVESEV  161 (199)
T ss_pred             CCCceEEEECCCCC-CChHHHHHHHHHHCCCcCCCcEEEEEecC
Confidence            34689998764311 11123455555553  7888888886554

>PRK10611 chemotaxis methyltransferase CheR; Provisional

Probab=98.50  E-value=5.8e-07  Score=81.16  Aligned_cols=90  Identities=13%  Similarity=0.184  Sum_probs=67.6

Q ss_pred             CCcEEEECCCcCH----HHHHHHHcC----CCCeEEEEeCCHHHHHHHHHH------------------Hhc----C-C-
Q 019861          178 GGNIIDASCGSGL----FSRIFAKSG----LFSLVVALDYSENMLKQCYEF------------------VQQ----E-S-  225 (334)
Q Consensus       178 ~~~vLDiGcG~G~----~~~~l~~~~----~~~~v~giD~s~~~~~~a~~~------------------~~~----~-~-  225 (334)
                      .-+|+..||++|.    ++..+.+..    ...+++|+|+|+.+++.|++-                  +..    . + 
T Consensus       116 ~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~~  195 (287)
T PRK10611        116 EYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEGL  195 (287)
T ss_pred             CEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCce
Confidence            3699999999994    334444432    135899999999999999852                  100    0 0 


Q ss_pred             ---------------------CCC-CCCceEEEeCccccCCCC--HHHHHHHHHHcccCCcEEEEE
Q 019861          226 ---------------------NFP-KDSIDAVHAGAAIHCWSS--PSTGVAEISRVLRPGGVFVGT  267 (334)
Q Consensus       226 ---------------------~~~-~~~fD~V~~~~vl~h~~d--~~~~L~~i~r~LkpgG~lii~  267 (334)
                                           +++ .+.||+|+|.++|.|+.+  ...+++++.+.|+|||+|++.
T Consensus       196 ~~v~~~lr~~V~F~~~NL~~~~~~~~~~fD~I~cRNvliyF~~~~~~~vl~~l~~~L~pgG~L~lG  261 (287)
T PRK10611        196 VRVRQELANYVDFQQLNLLAKQWAVPGPFDAIFCRNVMIYFDKTTQERILRRFVPLLKPDGLLFAG  261 (287)
T ss_pred             EEEChHHHccCEEEcccCCCCCCccCCCcceeeHhhHHhcCCHHHHHHHHHHHHHHhCCCcEEEEe
Confidence                                 122 478999999999999965  468999999999999988773

>KOG1331 consensus Predicted methyltransferase [General function prediction only]

Probab=98.48  E-value=2.6e-07  Score=81.42  Aligned_cols=90  Identities=27%  Similarity=0.418  Sum_probs=72.5

Q ss_pred             CCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhc--------CCCCCCCCceEEEeCccccCCCCH--
Q 019861          178 GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQ--------ESNFPKDSIDAVHAGAAIHCWSSP--  247 (334)
Q Consensus       178 ~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~--------~~~~~~~~fD~V~~~~vl~h~~d~--  247 (334)
                      +..++|+|||.|..+.    ..|.+.++|.|++...+..+++.-..        ..|+++.+||.+++..|+||+...  
T Consensus        46 gsv~~d~gCGngky~~----~~p~~~~ig~D~c~~l~~~ak~~~~~~~~~ad~l~~p~~~~s~d~~lsiavihhlsT~~R  121 (293)
T KOG1331|consen   46 GSVGLDVGCGNGKYLG----VNPLCLIIGCDLCTGLLGGAKRSGGDNVCRADALKLPFREESFDAALSIAVIHHLSTRER  121 (293)
T ss_pred             cceeeecccCCcccCc----CCCcceeeecchhhhhccccccCCCceeehhhhhcCCCCCCccccchhhhhhhhhhhHHH
Confidence            7899999999995442    22556899999999988888764331        237889999999999999999854  


Q ss_pred             -HHHHHHHHHcccCCcEEEEEEecc
Q 019861          248 -STGVAEISRVLRPGGVFVGTTYIV  271 (334)
Q Consensus       248 -~~~L~~i~r~LkpgG~lii~~~~~  271 (334)
                       ..+++++.++|+|||..++..+..
T Consensus       122 R~~~l~e~~r~lrpgg~~lvyvwa~  146 (293)
T KOG1331|consen  122 RERALEELLRVLRPGGNALVYVWAL  146 (293)
T ss_pred             HHHHHHHHHHHhcCCCceEEEEehh
Confidence             579999999999999988866654

>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]

Probab=98.47  E-value=4.2e-07  Score=84.57  Aligned_cols=95  Identities=27%  Similarity=0.336  Sum_probs=80.7

Q ss_pred             CCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHh---------------cCCCCCCCCceEEEeCcc
Q 019861          176 VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQ---------------QESNFPKDSIDAVHAGAA  240 (334)
Q Consensus       176 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~---------------~~~~~~~~~fD~V~~~~v  240 (334)
                      .++..++|+|||.|.....++... ...++|+|.++..+..+.....               ...+++++.||.+-+..+
T Consensus       109 ~~~~~~~~~~~g~~~~~~~i~~f~-~~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~~~~~fedn~fd~v~~ld~  187 (364)
T KOG1269|consen  109 FPGSKVLDVGTGVGGPSRYIAVFK-KAGVVGLDNNAYEAFRANELAKKAYLDNKCNFVVADFGKMPFEDNTFDGVRFLEV  187 (364)
T ss_pred             cccccccccCcCcCchhHHHHHhc-cCCccCCCcCHHHHHHHHHHHHHHHhhhhcceehhhhhcCCCCccccCcEEEEee
Confidence            446789999999999999998875 4689999999987776654322               123789999999999999


Q ss_pred             ccCCCCHHHHHHHHHHcccCCcEEEEEEecc
Q 019861          241 IHCWSSPSTGVAEISRVLRPGGVFVGTTYIV  271 (334)
Q Consensus       241 l~h~~d~~~~L~~i~r~LkpgG~lii~~~~~  271 (334)
                      ..|.+++..+++|++++++|||.++..++..
T Consensus       188 ~~~~~~~~~~y~Ei~rv~kpGG~~i~~e~i~  218 (364)
T KOG1269|consen  188 VCHAPDLEKVYAEIYRVLKPGGLFIVKEWIK  218 (364)
T ss_pred             cccCCcHHHHHHHHhcccCCCceEEeHHHHH
Confidence            9999999999999999999999999977765

>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]

Probab=98.47  E-value=2e-06  Score=78.53  Aligned_cols=104  Identities=21%  Similarity=0.251  Sum_probs=81.6

Q ss_pred             HHHHHHHcccCCCCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCC---------------CCC
Q 019861          164 KEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES---------------NFP  228 (334)
Q Consensus       164 ~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~---------------~~~  228 (334)
                      ++...+..+....+|..|||-=||||.++..+.-.|.  +++|.|++..|++.++.++....               +++
T Consensus       184 ~lAR~mVNLa~v~~G~~vlDPFcGTGgiLiEagl~G~--~viG~Did~~mv~gak~Nl~~y~i~~~~~~~~~Da~~lpl~  261 (347)
T COG1041         184 RLARAMVNLARVKRGELVLDPFCGTGGILIEAGLMGA--RVIGSDIDERMVRGAKINLEYYGIEDYPVLKVLDATNLPLR  261 (347)
T ss_pred             HHHHHHHHHhccccCCEeecCcCCccHHHHhhhhcCc--eEeecchHHHHHhhhhhhhhhhCcCceeEEEecccccCCCC
Confidence            4455566666667789999999999999999998876  99999999999999998876432               577


Q ss_pred             CCCceEEEeCc------cccCC--CC-HHHHHHHHHHcccCCcEEEEEEe
Q 019861          229 KDSIDAVHAGA------AIHCW--SS-PSTGVAEISRVLRPGGVFVGTTY  269 (334)
Q Consensus       229 ~~~fD~V~~~~------vl~h~--~d-~~~~L~~i~r~LkpgG~lii~~~  269 (334)
                      +.++|+|++.-      ...-.  .+ ...+|+.+.++|++||++++..+
T Consensus       262 ~~~vdaIatDPPYGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~p  311 (347)
T COG1041         262 DNSVDAIATDPPYGRSTKIKGEGLDELYEEALESASEVLKPGGRIVFAAP  311 (347)
T ss_pred             CCccceEEecCCCCcccccccccHHHHHHHHHHHHHHHhhcCcEEEEecC
Confidence            77899999741      11111  11 25789999999999999999776

>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed

Probab=98.46  E-value=1e-06  Score=86.22  Aligned_cols=89  Identities=16%  Similarity=0.194  Sum_probs=72.8

Q ss_pred             CCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCC----------------CCCCCCceEEEeCcc
Q 019861          177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES----------------NFPKDSIDAVHAGAA  240 (334)
Q Consensus       177 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~----------------~~~~~~fD~V~~~~v  240 (334)
                      .+..+||||||.|.++..++...|+..++|+|+....+..+.++.....                .++++++|.|+..+ 
T Consensus       347 ~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~~~l~N~~~~~~~~~~~~~~~~~~sv~~i~i~F-  425 (506)
T PRK01544        347 KRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGEQNITNFLLFPNNLDLILNDLPNNSLDGIYILF-  425 (506)
T ss_pred             CCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHhcCcccccEEEEEC-
Confidence            3568999999999999999999999999999999988777766543321                25678888888765 


Q ss_pred             ccCCCCH-------------HHHHHHHHHcccCCcEEEEEEec
Q 019861          241 IHCWSSP-------------STGVAEISRVLRPGGVFVGTTYI  270 (334)
Q Consensus       241 l~h~~d~-------------~~~L~~i~r~LkpgG~lii~~~~  270 (334)
                          |||             ..+|+.++++|+|||.+.+.+-.
T Consensus       426 ----PDPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~TD~  464 (506)
T PRK01544        426 ----PDPWIKNKQKKKRIFNKERLKILQDKLKDNGNLVFASDI  464 (506)
T ss_pred             ----CCCCCCCCCccccccCHHHHHHHHHhcCCCCEEEEEcCC
Confidence                444             47899999999999999987654

>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed

Probab=98.45  E-value=1.8e-06  Score=79.64  Aligned_cols=99  Identities=11%  Similarity=0.154  Sum_probs=64.6

Q ss_pred             HHHHHHcccCCCCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCCC---------------CCC
Q 019861          165 EFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESN---------------FPK  229 (334)
Q Consensus       165 ~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~---------------~~~  229 (334)
                      +.+.+.+++...++.+|||+|||+|.++..++..+.  +|+|+|+++.+++.|+++.....-               ...
T Consensus       161 l~~~v~~~l~~~~~~~VLDl~cG~G~~sl~la~~~~--~V~gvD~s~~av~~A~~n~~~~~l~~v~~~~~D~~~~~~~~~  238 (315)
T PRK03522        161 LYATARDWVRELPPRSMWDLFCGVGGFGLHCATPGM--QLTGIEISAEAIACAKQSAAELGLTNVQFQALDSTQFATAQG  238 (315)
T ss_pred             HHHHHHHHHHhcCCCEEEEccCCCCHHHHHHHhcCC--EEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCHHHHHHhcC
Confidence            334445555444568999999999999999999764  999999999999999987654320               123


Q ss_pred             CCceEEEeCccccCCCCHHHHHHHHHHcccCCcEEEEEE
Q 019861          230 DSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTT  268 (334)
Q Consensus       230 ~~fD~V~~~~vl~h~~d~~~~L~~i~r~LkpgG~lii~~  268 (334)
                      +.||+|++.---.  .-...++ ++...++|++.++++.
T Consensus       239 ~~~D~Vv~dPPr~--G~~~~~~-~~l~~~~~~~ivyvsc  274 (315)
T PRK03522        239 EVPDLVLVNPPRR--GIGKELC-DYLSQMAPRFILYSSC  274 (315)
T ss_pred             CCCeEEEECCCCC--CccHHHH-HHHHHcCCCeEEEEEC
Confidence            4688888762100  0011222 3333366777666644

>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]

Probab=98.40  E-value=1.5e-05  Score=66.47  Aligned_cols=49  Identities=22%  Similarity=0.304  Sum_probs=43.3

Q ss_pred             CCCCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhc
Q 019861          174 KPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQ  223 (334)
Q Consensus       174 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~  223 (334)
                      ....+.+|+|+|||+|.++...+-.|+ ..|+|+|+++++++.++++...
T Consensus        42 g~l~g~~V~DlG~GTG~La~ga~~lGa-~~V~~vdiD~~a~ei~r~N~~~   90 (198)
T COG2263          42 GDLEGKTVLDLGAGTGILAIGAALLGA-SRVLAVDIDPEALEIARANAEE   90 (198)
T ss_pred             CCcCCCEEEEcCCCcCHHHHHHHhcCC-cEEEEEecCHHHHHHHHHHHHh
Confidence            344577899999999999999999885 5999999999999999998775

>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]

Probab=98.39  E-value=1.4e-06  Score=79.22  Aligned_cols=89  Identities=20%  Similarity=0.319  Sum_probs=67.0

Q ss_pred             CCCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCC---------------CCCCCCceEEEeCc
Q 019861          175 PVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES---------------NFPKDSIDAVHAGA  239 (334)
Q Consensus       175 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~---------------~~~~~~fD~V~~~~  239 (334)
                      ..+++.|||+|||+|-++...+++| ..+|+++|.|.-+ +.|.+.+....               .+|..+.|+|++-+
T Consensus        58 lf~dK~VlDVGcGtGILS~F~akAG-A~~V~aVe~S~ia-~~a~~iv~~N~~~~ii~vi~gkvEdi~LP~eKVDiIvSEW  135 (346)
T KOG1499|consen   58 LFKDKTVLDVGCGTGILSMFAAKAG-ARKVYAVEASSIA-DFARKIVKDNGLEDVITVIKGKVEDIELPVEKVDIIVSEW  135 (346)
T ss_pred             hcCCCEEEEcCCCccHHHHHHHHhC-cceEEEEechHHH-HHHHHHHHhcCccceEEEeecceEEEecCccceeEEeehh
Confidence            4568899999999999999999999 4799999976544 77777655432               35678899999854


Q ss_pred             c---ccCCCCHHHHHHHHHHcccCCcEEE
Q 019861          240 A---IHCWSSPSTGVAEISRVLRPGGVFV  265 (334)
Q Consensus       240 v---l~h~~d~~~~L~~i~r~LkpgG~li  265 (334)
                      .   |-+-.-...+|-.=-+.|+|||.++
T Consensus       136 MGy~Ll~EsMldsVl~ARdkwL~~~G~i~  164 (346)
T KOG1499|consen  136 MGYFLLYESMLDSVLYARDKWLKEGGLIY  164 (346)
T ss_pred             hhHHHHHhhhhhhhhhhhhhccCCCceEc
Confidence            3   2222233456777778999999775

>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=98.37  E-value=4.1e-06  Score=75.62  Aligned_cols=106  Identities=17%  Similarity=0.114  Sum_probs=74.3

Q ss_pred             HHHHHHcccCCCCCCcEEEECCCcCHHHHHHHHcCC-CCeEEEEeCCHHHHHHHHHHHhcCCC--------------CCC
Q 019861          165 EFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGL-FSLVVALDYSENMLKQCYEFVQQESN--------------FPK  229 (334)
Q Consensus       165 ~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~-~~~v~giD~s~~~~~~a~~~~~~~~~--------------~~~  229 (334)
                      .+..+...++...+.+|||+|+|.|..+..+.+..+ ..+++++|.|+.|++.++..+.....              .+-
T Consensus        21 vl~El~~r~p~f~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~  100 (274)
T PF09243_consen   21 VLSELRKRLPDFRPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAGPNNRNAEWRRVLYRDFLPF  100 (274)
T ss_pred             HHHHHHHhCcCCCCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhcccccccchhhhhhhcccccC
Confidence            334455555555678999999999987766665432 34899999999999998876553321              112


Q ss_pred             CCceEEEeCccccCCCCH--HHHHHHHHHcccCCcEEEEEEeccC
Q 019861          230 DSIDAVHAGAAIHCWSSP--STGVAEISRVLRPGGVFVGTTYIVD  272 (334)
Q Consensus       230 ~~fD~V~~~~vl~h~~d~--~~~L~~i~r~LkpgG~lii~~~~~~  272 (334)
                      ...|+|++.++|..+++.  ..+++.+.+.+.+  .|++.++...
T Consensus       101 ~~~DLvi~s~~L~EL~~~~r~~lv~~LW~~~~~--~LVlVEpGt~  143 (274)
T PF09243_consen  101 PPDDLVIASYVLNELPSAARAELVRSLWNKTAP--VLVLVEPGTP  143 (274)
T ss_pred             CCCcEEEEehhhhcCCchHHHHHHHHHHHhccC--cEEEEcCCCh
Confidence            234999999999999872  2455666555554  8888888753

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation

>PRK00536 speE spermidine synthase; Provisional

Probab=98.36  E-value=2.6e-06  Score=75.81  Aligned_cols=86  Identities=13%  Similarity=0.110  Sum_probs=69.4

Q ss_pred             CCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCC------------CC---CCCCceEEEeCccc
Q 019861          177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES------------NF---PKDSIDAVHAGAAI  241 (334)
Q Consensus       177 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~------------~~---~~~~fD~V~~~~vl  241 (334)
                      .+++||=||.|.|..++.+.+.-.  +|+-+|+++.+++.+++.+....            .+   ..++||+|+.... 
T Consensus        72 ~pk~VLIiGGGDGg~~REvLkh~~--~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~~~~~~~~~~fDVIIvDs~-  148 (262)
T PRK00536         72 ELKEVLIVDGFDLELAHQLFKYDT--HVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQLLDLDIKKYDLIICLQE-  148 (262)
T ss_pred             CCCeEEEEcCCchHHHHHHHCcCC--eeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEeehhhhccCCcCCEEEEcCC-
Confidence            358999999999999999999853  99999999999999998654311            11   2368999998742 


Q ss_pred             cCCCCHHHHHHHHHHcccCCcEEEEEEe
Q 019861          242 HCWSSPSTGVAEISRVLRPGGVFVGTTY  269 (334)
Q Consensus       242 ~h~~d~~~~L~~i~r~LkpgG~lii~~~  269 (334)
                          .+..+.+.+++.|+|||.++....
T Consensus       149 ----~~~~fy~~~~~~L~~~Gi~v~Qs~  172 (262)
T PRK00536        149 ----PDIHKIDGLKRMLKEDGVFISVAK  172 (262)
T ss_pred             ----CChHHHHHHHHhcCCCcEEEECCC
Confidence                446778999999999999998543

>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=98.35  E-value=2.4e-06  Score=71.98  Aligned_cols=96  Identities=22%  Similarity=0.324  Sum_probs=70.4

Q ss_pred             HHHHHcccCCCCCCcEEEECCCcCHHHHHHHHc--CCCCeEEEEeCCHHHHHHHHHHHhcCC------------------
Q 019861          166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKS--GLFSLVVALDYSENMLKQCYEFVQQES------------------  225 (334)
Q Consensus       166 ~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~--~~~~~v~giD~s~~~~~~a~~~~~~~~------------------  225 (334)
                      ++.+...+  .+|.+.||+|.|+|+++..++..  .++...+|||.-++.++.+++++....                  
T Consensus        73 le~L~~~L--~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivv  150 (237)
T KOG1661|consen   73 LEYLDDHL--QPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVV  150 (237)
T ss_pred             HHHHHHhh--ccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEEe
Confidence            34444444  45899999999999998888743  223356999999999999998876432                  


Q ss_pred             ------CCCCCCceEEEeCccccCCCCHHHHHHHHHHcccCCcEEEEEEe
Q 019861          226 ------NFPKDSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTY  269 (334)
Q Consensus       226 ------~~~~~~fD~V~~~~vl~h~~d~~~~L~~i~r~LkpgG~lii~~~  269 (334)
                            .-+..+||.|++...-.      ...+++...|++||.+++...
T Consensus       151 GDgr~g~~e~a~YDaIhvGAaa~------~~pq~l~dqL~~gGrllip~~  194 (237)
T KOG1661|consen  151 GDGRKGYAEQAPYDAIHVGAAAS------ELPQELLDQLKPGGRLLIPVG  194 (237)
T ss_pred             CCccccCCccCCcceEEEccCcc------ccHHHHHHhhccCCeEEEeec
Confidence                  12356899999985433      346678889999999998544

>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=98.34  E-value=4.5e-05  Score=63.02  Aligned_cols=115  Identities=19%  Similarity=0.247  Sum_probs=80.7

Q ss_pred             CCCCcEEEECCCcCHHHHHHHHc-CCCCeEEEEeCCHHHHHHHHHHHhcCC------------CCCCCCceEEEeCc--c
Q 019861          176 VLGGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQQES------------NFPKDSIDAVHAGA--A  240 (334)
Q Consensus       176 ~~~~~vLDiGcG~G~~~~~l~~~-~~~~~v~giD~s~~~~~~a~~~~~~~~------------~~~~~~fD~V~~~~--v  240 (334)
                      .....+||||||+|..+.+++.. ++++.+.++|+|+.+++..++....+.            .+..++.|+++.+-  |
T Consensus        42 ~~~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~~~~~V~tdl~~~l~~~~VDvLvfNPPYV  121 (209)
T KOG3191|consen   42 HNPEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRVHIDVVRTDLLSGLRNESVDVLVFNPPYV  121 (209)
T ss_pred             cCceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCCccceeehhHHhhhccCCccEEEECCCcC
Confidence            33678999999999998888776 677889999999999988776544332            13347888888752  2


Q ss_pred             c---cCC------------CC----HHHHHHHHHHcccCCcEEEEEEeccCCCCCchHHHHHHHHHhhhhcCccCCCCHH
Q 019861          241 I---HCW------------SS----PSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSER  301 (334)
Q Consensus       241 l---~h~------------~d----~~~~L~~i~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~  301 (334)
                      .   +.+            .|    ...+|..+-.+|.|.|++++...-.+                          .++
T Consensus       122 pt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~~~~N--------------------------~p~  175 (209)
T KOG3191|consen  122 PTSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLVALRAN--------------------------KPK  175 (209)
T ss_pred             cCCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEeeehhhc--------------------------CHH
Confidence            1   111            11    13456667778889999888655432                          366


Q ss_pred             HHHHHHHhCCCcEEE
Q 019861          302 EIEDLCRACGLVDFK  316 (334)
Q Consensus       302 ~l~~ll~~~Gf~~v~  316 (334)
                      ++.++++..||.+..
T Consensus       176 ei~k~l~~~g~~~~~  190 (209)
T KOG3191|consen  176 EILKILEKKGYGVRI  190 (209)
T ss_pred             HHHHHHhhcccceeE
Confidence            888899999996644

>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]

Probab=98.33  E-value=2.1e-05  Score=64.04  Aligned_cols=125  Identities=18%  Similarity=0.297  Sum_probs=97.3

Q ss_pred             HHHhHHHh--hHhcCCCCcHHHHHHHHcccCCCCCCcEEEECCCcCHHHHHHHHcCC-CCeEEEEeCCHHHHHHHHHHHh
Q 019861          146 YERGWRQN--FVWGGFPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGL-FSLVVALDYSENMLKQCYEFVQ  222 (334)
Q Consensus       146 ~~~~w~~~--~~~~~~~~~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~-~~~v~giD~s~~~~~~a~~~~~  222 (334)
                      +-++|-..  ......+......+.+..-+.+..+.-|||+|.|+|-++..+...+. ...++.+|.+++......+.+.
T Consensus        15 F~k~wi~~PrtVGaI~PsSs~lA~~M~s~I~pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~p   94 (194)
T COG3963          15 FFKGWIDNPRTVGAILPSSSILARKMASVIDPESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLYP   94 (194)
T ss_pred             HHHHHhcCCceeeeecCCcHHHHHHHHhccCcccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhCC
Confidence            33445432  23344555667778888888888899999999999999999998863 4689999999999999988766


Q ss_pred             cCC--------------CCCCCCceEEEeCccccCCCC--HHHHHHHHHHcccCCcEEEEEEec
Q 019861          223 QES--------------NFPKDSIDAVHAGAAIHCWSS--PSTGVAEISRVLRPGGVFVGTTYI  270 (334)
Q Consensus       223 ~~~--------------~~~~~~fD~V~~~~vl~h~~d--~~~~L~~i~r~LkpgG~lii~~~~  270 (334)
                      +..              ...+..||.|++.--+-.++-  ..+.|+++...|..||.++..+..
T Consensus        95 ~~~ii~gda~~l~~~l~e~~gq~~D~viS~lPll~~P~~~~iaile~~~~rl~~gg~lvqftYg  158 (194)
T COG3963          95 GVNIINGDAFDLRTTLGEHKGQFFDSVISGLPLLNFPMHRRIAILESLLYRLPAGGPLVQFTYG  158 (194)
T ss_pred             CccccccchhhHHHHHhhcCCCeeeeEEeccccccCcHHHHHHHHHHHHHhcCCCCeEEEEEec
Confidence            542              345678999999877766663  357899999999999999887766

>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional

Probab=98.31  E-value=3.8e-06  Score=75.26  Aligned_cols=74  Identities=12%  Similarity=0.163  Sum_probs=57.0

Q ss_pred             HHHHHHHcccCCCCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCC----------CCCCCCce
Q 019861          164 KEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES----------NFPKDSID  233 (334)
Q Consensus       164 ~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~----------~~~~~~fD  233 (334)
                      ...+.+.+.+...++.+|||||||+|.++..+++.+.  +++|+|+++.+++.+++++....          .++...||
T Consensus        16 ~~~~~iv~~~~~~~~~~VLEIG~G~G~lt~~L~~~~~--~v~~vEid~~~~~~l~~~~~~~~~v~ii~~D~~~~~~~~~d   93 (258)
T PRK14896         16 RVVDRIVEYAEDTDGDPVLEIGPGKGALTDELAKRAK--KVYAIELDPRLAEFLRDDEIAAGNVEIIEGDALKVDLPEFN   93 (258)
T ss_pred             HHHHHHHHhcCCCCcCeEEEEeCccCHHHHHHHHhCC--EEEEEECCHHHHHHHHHHhccCCCEEEEEeccccCCchhce
Confidence            3445666666666788999999999999999999865  99999999999999998765321          12234578


Q ss_pred             EEEeCc
Q 019861          234 AVHAGA  239 (334)
Q Consensus       234 ~V~~~~  239 (334)
                      .|+++-
T Consensus        94 ~Vv~Nl   99 (258)
T PRK14896         94 KVVSNL   99 (258)
T ss_pred             EEEEcC
Confidence            888764

>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]

Probab=98.30  E-value=4.8e-06  Score=74.35  Aligned_cols=90  Identities=13%  Similarity=0.172  Sum_probs=69.3

Q ss_pred             CCcEEEECCCcCH----HHHHHHHcCC-----CCeEEEEeCCHHHHHHHHHH------H-hcC--------------C--
Q 019861          178 GGNIIDASCGSGL----FSRIFAKSGL-----FSLVVALDYSENMLKQCYEF------V-QQE--------------S--  225 (334)
Q Consensus       178 ~~~vLDiGcG~G~----~~~~l~~~~~-----~~~v~giD~s~~~~~~a~~~------~-~~~--------------~--  225 (334)
                      .-+|+-+||++|.    ++..+.+.++     ..+++|+|+|..+++.|+.-      . ...              +  
T Consensus        97 ~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~y  176 (268)
T COG1352          97 PIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGSY  176 (268)
T ss_pred             ceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCcE
Confidence            5699999999993    4555555542     47899999999999999842      1 100              0  


Q ss_pred             --------------------CCCCCCceEEEeCccccCCCCH--HHHHHHHHHcccCCcEEEEE
Q 019861          226 --------------------NFPKDSIDAVHAGAAIHCWSSP--STGVAEISRVLRPGGVFVGT  267 (334)
Q Consensus       226 --------------------~~~~~~fD~V~~~~vl~h~~d~--~~~L~~i~r~LkpgG~lii~  267 (334)
                                          ....+.||+|+|.+||-.+..+  ..++..++..|+|||+|++.
T Consensus       177 ~v~~~ir~~V~F~~~NLl~~~~~~~~fD~IfCRNVLIYFd~~~q~~il~~f~~~L~~gG~LflG  240 (268)
T COG1352         177 RVKEELRKMVRFRRHNLLDDSPFLGKFDLIFCRNVLIYFDEETQERILRRFADSLKPGGLLFLG  240 (268)
T ss_pred             EEChHHhcccEEeecCCCCCccccCCCCEEEEcceEEeeCHHHHHHHHHHHHHHhCCCCEEEEc
Confidence                                1134569999999999999866  47999999999999999983

>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]

Probab=98.29  E-value=2.7e-07  Score=77.32  Aligned_cols=90  Identities=17%  Similarity=0.070  Sum_probs=72.6

Q ss_pred             CCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHH-hcC----CCCCCCCceEEEeCccccCCCCHHHHHH
Q 019861          178 GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFV-QQE----SNFPKDSIDAVHAGAAIHCWSSPSTGVA  252 (334)
Q Consensus       178 ~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~-~~~----~~~~~~~fD~V~~~~vl~h~~d~~~~L~  252 (334)
                      +.++||+|+|.|..+..++....  +|++.+.|..|....+++- .-.    ..-.+-+||+|.|.++|.---+|-..|+
T Consensus       113 ~~~lLDlGAGdGeit~~m~p~fe--evyATElS~tMr~rL~kk~ynVl~~~ew~~t~~k~dli~clNlLDRc~~p~kLL~  190 (288)
T KOG3987|consen  113 PVTLLDLGAGDGEITLRMAPTFE--EVYATELSWTMRDRLKKKNYNVLTEIEWLQTDVKLDLILCLNLLDRCFDPFKLLE  190 (288)
T ss_pred             CeeEEeccCCCcchhhhhcchHH--HHHHHHhhHHHHHHHhhcCCceeeehhhhhcCceeehHHHHHHHHhhcChHHHHH
Confidence            46999999999999999998765  8999999999988777531 111    1122457999999999988889999999


Q ss_pred             HHHHcccC-CcEEEEEEe
Q 019861          253 EISRVLRP-GGVFVGTTY  269 (334)
Q Consensus       253 ~i~r~Lkp-gG~lii~~~  269 (334)
                      .|+.+|+| .|++++.-.
T Consensus       191 Di~~vl~psngrvivaLV  208 (288)
T KOG3987|consen  191 DIHLVLAPSNGRVIVALV  208 (288)
T ss_pred             HHHHHhccCCCcEEEEEE
Confidence            99999999 888776443

>TIGR00478 tly hemolysin TlyA family protein

Probab=98.28  E-value=5.6e-06  Score=72.42  Aligned_cols=123  Identities=15%  Similarity=0.122  Sum_probs=73.7

Q ss_pred             CCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHH-HHHHHh----cCCC--------C--CCCCceEEEeCcc
Q 019861          176 VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQ-CYEFVQ----QESN--------F--PKDSIDAVHAGAA  240 (334)
Q Consensus       176 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~-a~~~~~----~~~~--------~--~~~~fD~V~~~~v  240 (334)
                      .++.++||+|||+|.++..+++.| ..+|+|+|+++.++.. .++...    +..+        +  .-..+|+++.+..
T Consensus        74 ~~~~~vlDiG~gtG~~t~~l~~~g-a~~v~avD~~~~~l~~~l~~~~~v~~~~~~ni~~~~~~~~~~d~~~~DvsfiS~~  152 (228)
T TIGR00478        74 VKNKIVLDVGSSTGGFTDCALQKG-AKEVYGVDVGYNQLAEKLRQDERVKVLERTNIRYVTPADIFPDFATFDVSFISLI  152 (228)
T ss_pred             CCCCEEEEcccCCCHHHHHHHHcC-CCEEEEEeCCHHHHHHHHhcCCCeeEeecCCcccCCHhHcCCCceeeeEEEeehH
Confidence            457799999999999999999986 3589999999987775 332111    0011        1  1124565555543


Q ss_pred             ccCCCCHHHHHHHHHHcccCCcEEEE-EEeccCCCCCchHHHHHHHHHhhh--h--cCccCCCCHHHHHHHHHhCCCcEE
Q 019861          241 IHCWSSPSTGVAEISRVLRPGGVFVG-TTYIVDGPFNLIPFSRLLRQNMMQ--I--SGSYTFLSEREIEDLCRACGLVDF  315 (334)
Q Consensus       241 l~h~~d~~~~L~~i~r~LkpgG~lii-~~~~~~~~~~~~~~~~~~~~~~~~--~--~~~~~~~t~~~l~~ll~~~Gf~~v  315 (334)
                      +        +|..+.+.|+| |.+++ .-|-.+-          .......  .  ....+..-.+++...+.+.||++.
T Consensus       153 ~--------~l~~i~~~l~~-~~~~~L~KPqFE~----------~~~~~~~~giv~~~~~~~~~~~~~~~~~~~~~~~~~  213 (228)
T TIGR00478       153 S--------ILPELDLLLNP-NDLTLLFKPQFEA----------GREKKNKKGVVRDKEAIALALHKVIDKGESPDFQEK  213 (228)
T ss_pred             h--------HHHHHHHHhCc-CeEEEEcChHhhh----------cHhhcCcCCeecCHHHHHHHHHHHHHHHHcCCCeEe
Confidence            2        48889999999 76554 3232211          0000000  0  001122235677788888999876


Q ss_pred             EEe
Q 019861          316 KCT  318 (334)
Q Consensus       316 ~~~  318 (334)
                      ...
T Consensus       214 ~~~  216 (228)
T TIGR00478       214 KII  216 (228)
T ss_pred             eEE
Confidence            643

Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).

>PLN02589 caffeoyl-CoA O-methyltransferase

Probab=98.28  E-value=7.2e-06  Score=72.60  Aligned_cols=102  Identities=13%  Similarity=0.092  Sum_probs=75.3

Q ss_pred             HHHHcccCCCCCCcEEEECCCcCHHHHHHHHcC-CCCeEEEEeCCHHHHHHHHHHHhcCCC-----------------C-
Q 019861          167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSG-LFSLVVALDYSENMLKQCYEFVQQESN-----------------F-  227 (334)
Q Consensus       167 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~~v~giD~s~~~~~~a~~~~~~~~~-----------------~-  227 (334)
                      .++...+...+.++|||||+++|+.+.+++... +.++++.+|.++...+.|++.+...+-                 + 
T Consensus        69 ~lL~~l~~~~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e~L~~l~  148 (247)
T PLN02589         69 QFLNMLLKLINAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDQMI  148 (247)
T ss_pred             HHHHHHHHHhCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHHHHHHHH
Confidence            334444444456799999999999999888763 457999999999999999998765430                 1 


Q ss_pred             ----CCCCceEEEeCccccCCCCHHHHHHHHHHcccCCcEEEEEEecc
Q 019861          228 ----PKDSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIV  271 (334)
Q Consensus       228 ----~~~~fD~V~~~~vl~h~~d~~~~L~~i~r~LkpgG~lii~~~~~  271 (334)
                          ..++||+|+...-=   .+....+..+.+.|+|||.+++-...+
T Consensus       149 ~~~~~~~~fD~iFiDadK---~~Y~~y~~~~l~ll~~GGviv~DNvl~  193 (247)
T PLN02589        149 EDGKYHGTFDFIFVDADK---DNYINYHKRLIDLVKVGGVIGYDNTLW  193 (247)
T ss_pred             hccccCCcccEEEecCCH---HHhHHHHHHHHHhcCCCeEEEEcCCCC
Confidence                12689999987541   134567888899999999988744443

>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]

Probab=98.27  E-value=1.1e-05  Score=72.79  Aligned_cols=92  Identities=14%  Similarity=0.190  Sum_probs=73.0

Q ss_pred             CCCCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCC--CC-----------------CCCCceE
Q 019861          174 KPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES--NF-----------------PKDSIDA  234 (334)
Q Consensus       174 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~--~~-----------------~~~~fD~  234 (334)
                      .+.+ ++||-||.|.|.+++.+.+..+..+++.+|+++..++.+++.+....  .+                 ...+||+
T Consensus        74 h~~p-k~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~~~fDv  152 (282)
T COG0421          74 HPNP-KRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCEEKFDV  152 (282)
T ss_pred             CCCC-CeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhCCCcCCE
Confidence            3433 69999999999999999999877799999999999999999866432  11                 1237999


Q ss_pred             EEeCccccCCCCH------HHHHHHHHHcccCCcEEEEEE
Q 019861          235 VHAGAAIHCWSSP------STGVAEISRVLRPGGVFVGTT  268 (334)
Q Consensus       235 V~~~~vl~h~~d~------~~~L~~i~r~LkpgG~lii~~  268 (334)
                      |++.-.=. . .|      ..+++.+++.|+++|+++...
T Consensus       153 Ii~D~tdp-~-gp~~~Lft~eFy~~~~~~L~~~Gi~v~q~  190 (282)
T COG0421         153 IIVDSTDP-V-GPAEALFTEEFYEGCRRALKEDGIFVAQA  190 (282)
T ss_pred             EEEcCCCC-C-CcccccCCHHHHHHHHHhcCCCcEEEEec
Confidence            99865321 1 22      689999999999999999873

>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional

Probab=98.25  E-value=1.2e-05  Score=75.98  Aligned_cols=87  Identities=17%  Similarity=0.226  Sum_probs=68.5

Q ss_pred             CCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCC-------------CCC-CCCceEEEeCccccC
Q 019861          178 GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES-------------NFP-KDSIDAVHAGAAIHC  243 (334)
Q Consensus       178 ~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~-------------~~~-~~~fD~V~~~~vl~h  243 (334)
                      +.+|||++||+|.++..++.......|+++|+++.+++.+++++....             .+. .+.||+|++.=    
T Consensus        58 ~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~~~~~~v~~~Da~~~l~~~~~fD~V~lDP----  133 (382)
T PRK04338         58 RESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELNGLENEKVFNKDANALLHEERKFDVVDIDP----  133 (382)
T ss_pred             CCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCceEEEhhhHHHHHhhcCCCCEEEECC----
Confidence            468999999999999999876444589999999999999998764321             012 45799999853    


Q ss_pred             CCCHHHHHHHHHHcccCCcEEEEEE
Q 019861          244 WSSPSTGVAEISRVLRPGGVFVGTT  268 (334)
Q Consensus       244 ~~d~~~~L~~i~r~LkpgG~lii~~  268 (334)
                      ...+..+|....+.+++||.++++.
T Consensus       134 ~Gs~~~~l~~al~~~~~~gilyvSA  158 (382)
T PRK04338        134 FGSPAPFLDSAIRSVKRGGLLCVTA  158 (382)
T ss_pred             CCCcHHHHHHHHHHhcCCCEEEEEe
Confidence            1456778888788899999999983

>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB

Probab=98.24  E-value=1.1e-05  Score=76.23  Aligned_cols=98  Identities=10%  Similarity=0.106  Sum_probs=66.0

Q ss_pred             HHHHHcccCCCCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCCC-------------C--CCC
Q 019861          166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESN-------------F--PKD  230 (334)
Q Consensus       166 ~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~-------------~--~~~  230 (334)
                      ++.+..++...++.+|||+|||+|.++..++..+.  .++|+|+++.+++.|+++......             .  ..+
T Consensus       222 ~~~~~~~l~~~~~~~vLDL~cG~G~~~l~la~~~~--~v~~vE~~~~av~~a~~N~~~~~~~~~~~~~~d~~~~~~~~~~  299 (374)
T TIGR02085       222 YATARQWVREIPVTQMWDLFCGVGGFGLHCAGPDT--QLTGIEIESEAIACAQQSAQMLGLDNLSFAALDSAKFATAQMS  299 (374)
T ss_pred             HHHHHHHHHhcCCCEEEEccCCccHHHHHHhhcCC--eEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHHhcCC
Confidence            34444554434567999999999999999997764  999999999999999987654320             1  113


Q ss_pred             CceEEEeCccccCCCCHHHHHHHHHHcccCCcEEEEEE
Q 019861          231 SIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTT  268 (334)
Q Consensus       231 ~fD~V~~~~vl~h~~d~~~~L~~i~r~LkpgG~lii~~  268 (334)
                      .||+|++.==-..  -...+++.+. .++|++.++++.
T Consensus       300 ~~D~vi~DPPr~G--~~~~~l~~l~-~~~p~~ivyvsc  334 (374)
T TIGR02085       300 APELVLVNPPRRG--IGKELCDYLS-QMAPKFILYSSC  334 (374)
T ss_pred             CCCEEEECCCCCC--CcHHHHHHHH-hcCCCeEEEEEe
Confidence            5888877521111  1134455554 478888888754

This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.

>PLN02823 spermine synthase

Probab=98.23  E-value=9.8e-06  Score=75.00  Aligned_cols=90  Identities=17%  Similarity=0.244  Sum_probs=67.8

Q ss_pred             CCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcC------C-------------CCCCCCceEEEeC
Q 019861          178 GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQE------S-------------NFPKDSIDAVHAG  238 (334)
Q Consensus       178 ~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~------~-------------~~~~~~fD~V~~~  238 (334)
                      +.+||.||+|.|..+..+.+..+..+++.+|+++.+++.+++.+...      .             ...+++||+|++.
T Consensus       104 pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~~~~yDvIi~D  183 (336)
T PLN02823        104 PKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKRDEKFDVIIGD  183 (336)
T ss_pred             CCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhCCCCccEEEec
Confidence            57999999999999998888654568999999999999999886421      1             1124689999987


Q ss_pred             ccccCCC-C------HHHHHH-HHHHcccCCcEEEEEE
Q 019861          239 AAIHCWS-S------PSTGVA-EISRVLRPGGVFVGTT  268 (334)
Q Consensus       239 ~vl~h~~-d------~~~~L~-~i~r~LkpgG~lii~~  268 (334)
                      .. .... .      ...+++ .+++.|+|||++++..
T Consensus       184 ~~-dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q~  220 (336)
T PLN02823        184 LA-DPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVTQA  220 (336)
T ss_pred             CC-CccccCcchhhccHHHHHHHHHHhcCCCcEEEEec
Confidence            32 1110 1      135777 8999999999987743

>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed

Probab=98.23  E-value=3.9e-06  Score=75.79  Aligned_cols=58  Identities=16%  Similarity=0.230  Sum_probs=49.2

Q ss_pred             HHHHHHHHcccCCCCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHh
Q 019861          163 EKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQ  222 (334)
Q Consensus       163 ~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~  222 (334)
                      ....+.+.+.+...++.+|||||||+|.++..+++.+.  +++|+|+++.+++.+++++.
T Consensus        28 ~~i~~~i~~~l~~~~~~~VLEiG~G~G~lt~~L~~~~~--~v~avE~d~~~~~~~~~~~~   85 (272)
T PRK00274         28 ENILDKIVDAAGPQPGDNVLEIGPGLGALTEPLLERAA--KVTAVEIDRDLAPILAETFA   85 (272)
T ss_pred             HHHHHHHHHhcCCCCcCeEEEeCCCccHHHHHHHHhCC--cEEEEECCHHHHHHHHHhhc
Confidence            34455666667767788999999999999999999976  99999999999999988764

>PRK04148 hypothetical protein; Provisional

Probab=98.21  E-value=9.3e-06  Score=64.54  Aligned_cols=99  Identities=11%  Similarity=0.119  Sum_probs=64.2

Q ss_pred             HHHHHcccCCCCCCcEEEECCCcCH-HHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcC---CCCC-----CCCceEEE
Q 019861          166 FELMKGYLKPVLGGNIIDASCGSGL-FSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQE---SNFP-----KDSIDAVH  236 (334)
Q Consensus       166 ~~~l~~~l~~~~~~~vLDiGcG~G~-~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~---~~~~-----~~~fD~V~  236 (334)
                      .+.+.+.+...++.+|||||||+|. ++..|++.|.  .|+++|+++..++.+++.....   .-|.     -+.+|+|.
T Consensus         5 ~~~l~~~~~~~~~~kileIG~GfG~~vA~~L~~~G~--~ViaIDi~~~aV~~a~~~~~~~v~dDlf~p~~~~y~~a~liy   82 (134)
T PRK04148          5 AEFIAENYEKGKNKKIVELGIGFYFKVAKKLKESGF--DVIVIDINEKAVEKAKKLGLNAFVDDLFNPNLEIYKNAKLIY   82 (134)
T ss_pred             HHHHHHhcccccCCEEEEEEecCCHHHHHHHHHCCC--EEEEEECCHHHHHHHHHhCCeEEECcCCCCCHHHHhcCCEEE
Confidence            3455565655567899999999996 8888998886  9999999999999888763211   1111     24578887


Q ss_pred             eCccccCCCCHHHHHHHHHHcccC-CcEEEEEEeccC
Q 019861          237 AGAAIHCWSSPSTGVAEISRVLRP-GGVFVGTTYIVD  272 (334)
Q Consensus       237 ~~~vl~h~~d~~~~L~~i~r~Lkp-gG~lii~~~~~~  272 (334)
                      +..      -|..+..-+.++-+. |.-+++.....+
T Consensus        83 sir------pp~el~~~~~~la~~~~~~~~i~~l~~e  113 (134)
T PRK04148         83 SIR------PPRDLQPFILELAKKINVPLIIKPLSGE  113 (134)
T ss_pred             EeC------CCHHHHHHHHHHHHHcCCCEEEEcCCCC
Confidence            764      233333333333332 455666665554

>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]

Probab=98.21  E-value=1.5e-05  Score=69.85  Aligned_cols=100  Identities=15%  Similarity=0.257  Sum_probs=79.8

Q ss_pred             HHHHHcccCCCCCCcEEEECCCcCHHHHHHHHc-CCCCeEEEEeCCHHHHHHHHHHHhcCC-----------------CC
Q 019861          166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQQES-----------------NF  227 (334)
Q Consensus       166 ~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~~v~giD~s~~~~~~a~~~~~~~~-----------------~~  227 (334)
                      ..+|...+...||.+|||-|.|+|.++.++++. +|.++++-+|+...-.+.|++.+...+                 ..
T Consensus        94 ia~I~~~L~i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi~~~vt~~hrDVc~~GF~~  173 (314)
T KOG2915|consen   94 IAMILSMLEIRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGIGDNVTVTHRDVCGSGFLI  173 (314)
T ss_pred             HHHHHHHhcCCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCCCcceEEEEeecccCCccc
Confidence            457788888889999999999999999999887 677899999999999999998887654                 12


Q ss_pred             CCCCceEEEeCccccCCCCHHHHHHHHHHcccCCc-EEEEEEec
Q 019861          228 PKDSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGG-VFVGTTYI  270 (334)
Q Consensus       228 ~~~~fD~V~~~~vl~h~~d~~~~L~~i~r~LkpgG-~lii~~~~  270 (334)
                      .+..+|+|+.     .++.|..++-.++++||.+| ++.--.|.
T Consensus       174 ks~~aDaVFL-----DlPaPw~AiPha~~~lk~~g~r~csFSPC  212 (314)
T KOG2915|consen  174 KSLKADAVFL-----DLPAPWEAIPHAAKILKDEGGRLCSFSPC  212 (314)
T ss_pred             cccccceEEE-----cCCChhhhhhhhHHHhhhcCceEEeccHH
Confidence            2455666665     46899999999999999877 55544443

>PTZ00338 dimethyladenosine transferase-like protein; Provisional

Probab=98.20  E-value=6.9e-06  Score=74.80  Aligned_cols=73  Identities=11%  Similarity=0.101  Sum_probs=56.5

Q ss_pred             HHHHHHHcccCCCCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCC-------------CCCCC
Q 019861          164 KEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES-------------NFPKD  230 (334)
Q Consensus       164 ~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~-------------~~~~~  230 (334)
                      ...+.+.+.+...++.+|||||||+|.++..+.+.+.  +++++|+++.+++.+++++....             ..+..
T Consensus        23 ~i~~~Iv~~~~~~~~~~VLEIG~G~G~LT~~Ll~~~~--~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~Dal~~~~~  100 (294)
T PTZ00338         23 LVLDKIVEKAAIKPTDTVLEIGPGTGNLTEKLLQLAK--KVIAIEIDPRMVAELKKRFQNSPLASKLEVIEGDALKTEFP  100 (294)
T ss_pred             HHHHHHHHhcCCCCcCEEEEecCchHHHHHHHHHhCC--cEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECCHhhhccc
Confidence            3445666666666788999999999999999998865  89999999999999998775321             12234


Q ss_pred             CceEEEeC
Q 019861          231 SIDAVHAG  238 (334)
Q Consensus       231 ~fD~V~~~  238 (334)
                      .||.|+++
T Consensus       101 ~~d~VvaN  108 (294)
T PTZ00338        101 YFDVCVAN  108 (294)
T ss_pred             ccCEEEec
Confidence            68888864

>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins

Probab=98.19  E-value=2.4e-05  Score=69.36  Aligned_cols=133  Identities=20%  Similarity=0.144  Sum_probs=82.1

Q ss_pred             CcEEEECCCcC--HHHHHHHH-cCCCCeEEEEeCCHHHHHHHHHHHhcCCC-------------------------CCCC
Q 019861          179 GNIIDASCGSG--LFSRIFAK-SGLFSLVVALDYSENMLKQCYEFVQQESN-------------------------FPKD  230 (334)
Q Consensus       179 ~~vLDiGcG~G--~~~~~l~~-~~~~~~v~giD~s~~~~~~a~~~~~~~~~-------------------------~~~~  230 (334)
                      ...||||||--  .....+++ ..|.++|+.+|.++..+..++..+.....                         +.-.
T Consensus        70 rQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~~g~t~~v~aD~r~p~~iL~~p~~~~~lD~~  149 (267)
T PF04672_consen   70 RQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNPRGRTAYVQADLRDPEAILAHPEVRGLLDFD  149 (267)
T ss_dssp             -EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-TTSEEEEEE--TT-HHHHHCSHHHHCC--TT
T ss_pred             ceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCCCccEEEEeCCCCCHHHHhcCHHHHhcCCCC
Confidence            58999999953  34444444 46788999999999999999887665431                         1122


Q ss_pred             CceEEEeCccccCCCC---HHHHHHHHHHcccCCcEEEEEEeccCCCCCchHHHHHHHHHhhhhcCccCCCCHHHHHHHH
Q 019861          231 SIDAVHAGAAIHCWSS---PSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLC  307 (334)
Q Consensus       231 ~fD~V~~~~vl~h~~d---~~~~L~~i~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~l~~ll  307 (334)
                      .-=.|++..+|||++|   |..+++.+++.|.||.+|+++....+...   .........+.......+..|.+++..+|
T Consensus       150 rPVavll~~vLh~v~D~~dp~~iv~~l~d~lapGS~L~ish~t~d~~p---~~~~~~~~~~~~~~~~~~~Rs~~ei~~~f  226 (267)
T PF04672_consen  150 RPVAVLLVAVLHFVPDDDDPAGIVARLRDALAPGSYLAISHATDDGAP---ERAEALEAVYAQAGSPGRPRSREEIAAFF  226 (267)
T ss_dssp             S--EEEECT-GGGS-CGCTHHHHHHHHHCCS-TT-EEEEEEEB-TTSH---HHHHHHHHHHHHCCS----B-HHHHHHCC
T ss_pred             CCeeeeeeeeeccCCCccCHHHHHHHHHHhCCCCceEEEEecCCCCCH---HHHHHHHHHHHcCCCCceecCHHHHHHHc
Confidence            3347888999999974   78999999999999999999998875431   11233334444444566778999999999


Q ss_pred             HhCCCcEEE
Q 019861          308 RACGLVDFK  316 (334)
Q Consensus       308 ~~~Gf~~v~  316 (334)
                      .  ||+.++
T Consensus       227 ~--g~elve  233 (267)
T PF04672_consen  227 D--GLELVE  233 (267)
T ss_dssp             T--TSEE-T
T ss_pred             C--CCccCC
Confidence            6  888776

; PDB: 3GIW_A 3GO4_A 2QE6_A.

>KOG3201 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.18  E-value=3.8e-06  Score=67.84  Aligned_cols=110  Identities=15%  Similarity=0.068  Sum_probs=79.4

Q ss_pred             cHHHHHHHHcccCCCCCCcEEEECCCcCHH-HHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCC---------------
Q 019861          162 PEKEFELMKGYLKPVLGGNIIDASCGSGLF-SRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES---------------  225 (334)
Q Consensus       162 ~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~-~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~---------------  225 (334)
                      .+.+.-.+++......+.+|||+|.|.-.+ +..++...+...|...|=++..++..++......               
T Consensus        14 eeala~~~l~~~n~~rg~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n~~s~~tsc~vlrw~~~   93 (201)
T KOG3201|consen   14 EEALAWTILRDPNKIRGRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNMASSLTSCCVLRWLIW   93 (201)
T ss_pred             HHHHHHHHHhchhHHhHHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhcccccccceehhhHHHHh
Confidence            344444555555556678999999996444 4555556667799999999998888776543321               


Q ss_pred             ----CCCCCCceEEEeCccccCCCCHHHHHHHHHHcccCCcEEEEEEecc
Q 019861          226 ----NFPKDSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIV  271 (334)
Q Consensus       226 ----~~~~~~fD~V~~~~vl~h~~d~~~~L~~i~r~LkpgG~lii~~~~~  271 (334)
                          ......||.|++...+..-..-...++.|+..|+|.|..++..|-+
T Consensus        94 ~aqsq~eq~tFDiIlaADClFfdE~h~sLvdtIk~lL~p~g~Al~fsPRR  143 (201)
T KOG3201|consen   94 GAQSQQEQHTFDIILAADCLFFDEHHESLVDTIKSLLRPSGRALLFSPRR  143 (201)
T ss_pred             hhHHHHhhCcccEEEeccchhHHHHHHHHHHHHHHHhCcccceeEecCcc
Confidence                1224589999999887654445678899999999999988877765

>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []

Probab=98.15  E-value=2.1e-05  Score=75.58  Aligned_cols=88  Identities=16%  Similarity=0.240  Sum_probs=57.6

Q ss_pred             CCcEEEECCCcCHHHHHHHHcC----CCCeEEEEeCCHHHHHHHHHHHhcCC-------------CC-CCCCceEEEeCc
Q 019861          178 GGNIIDASCGSGLFSRIFAKSG----LFSLVVALDYSENMLKQCYEFVQQES-------------NF-PKDSIDAVHAGA  239 (334)
Q Consensus       178 ~~~vLDiGcG~G~~~~~l~~~~----~~~~v~giD~s~~~~~~a~~~~~~~~-------------~~-~~~~fD~V~~~~  239 (334)
                      +..|||||||+|-++...++++    ...+|+++|-|+.+....++++....             .+ ...++|+|++-.
T Consensus       187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w~~~V~vi~~d~r~v~lpekvDIIVSEl  266 (448)
T PF05185_consen  187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGWGDKVTVIHGDMREVELPEKVDIIVSEL  266 (448)
T ss_dssp             T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTTTTTEEEEES-TTTSCHSS-EEEEEE--
T ss_pred             ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCCCCeEEEEeCcccCCCCCCceeEEEEec
Confidence            5789999999999987776654    34699999999988877665533221             11 134899999832


Q ss_pred             --cccCCCCHHHHHHHHHHcccCCcEEE
Q 019861          240 --AIHCWSSPSTGVAEISRVLRPGGVFV  265 (334)
Q Consensus       240 --vl~h~~d~~~~L~~i~r~LkpgG~li  265 (334)
                        .+-.-.--...|....|.|||||.++
T Consensus       267 LGsfg~nEl~pE~Lda~~rfLkp~Gi~I  294 (448)
T PF05185_consen  267 LGSFGDNELSPECLDAADRFLKPDGIMI  294 (448)
T ss_dssp             -BTTBTTTSHHHHHHHGGGGEEEEEEEE
T ss_pred             cCCccccccCHHHHHHHHhhcCCCCEEe
Confidence              21111122346888999999999765

These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....

>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2

Probab=98.14  E-value=1.3e-05  Score=73.88  Aligned_cols=114  Identities=18%  Similarity=0.215  Sum_probs=78.3

Q ss_pred             cCCCCcHHHHHHHHcccCCCCCCcEEEECCCcCHHHHHHHHc-------CCCCeEEEEeCCHHHHHHHHHHHhcCC----
Q 019861          157 GGFPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKS-------GLFSLVVALDYSENMLKQCYEFVQQES----  225 (334)
Q Consensus       157 ~~~~~~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~-------~~~~~v~giD~s~~~~~~a~~~~~~~~----  225 (334)
                      +.|.-|....+++...+.+.++.+|+|..||+|.++..+.+.       .....++|+|+++.++..++-++.-..    
T Consensus        26 G~~~TP~~i~~l~~~~~~~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~~~  105 (311)
T PF02384_consen   26 GQFYTPREIVDLMVKLLNPKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGIDNS  105 (311)
T ss_dssp             GGC---HHHHHHHHHHHTT-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHHCB
T ss_pred             ceeehHHHHHHHHHhhhhccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhccccc
Confidence            457778888999999998877889999999999998888763       234689999999999988876532111    


Q ss_pred             -------------CCC-CCCceEEEeC--cccc-C----C-CC-------------HHHHHHHHHHcccCCcEEEEEEec
Q 019861          226 -------------NFP-KDSIDAVHAG--AAIH-C----W-SS-------------PSTGVAEISRVLRPGGVFVGTTYI  270 (334)
Q Consensus       226 -------------~~~-~~~fD~V~~~--~vl~-h----~-~d-------------~~~~L~~i~r~LkpgG~lii~~~~  270 (334)
                                   ... ...||+|+++  +... +    . .+             ...++..+.+.|++||++.+..|.
T Consensus       106 ~~~i~~~d~l~~~~~~~~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~~~Ilp~  185 (311)
T PF02384_consen  106 NINIIQGDSLENDKFIKNQKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGRAAIILPN  185 (311)
T ss_dssp             GCEEEES-TTTSHSCTST--EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEEEEEEEEH
T ss_pred             cccccccccccccccccccccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhcccccceeEEecc
Confidence                         111 4689999985  1111 0    0 01             126889999999999999998886

1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.

>TIGR00755 ksgA dimethyladenosine transferase

Probab=98.14  E-value=3.6e-05  Score=68.77  Aligned_cols=57  Identities=11%  Similarity=0.166  Sum_probs=48.4

Q ss_pred             HHHHHHHcccCCCCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHh
Q 019861          164 KEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQ  222 (334)
Q Consensus       164 ~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~  222 (334)
                      ...+.+.+.+...++.+|||||||+|.++..+++.+.  .++++|+++.+++.+++++.
T Consensus        16 ~i~~~i~~~~~~~~~~~VLEiG~G~G~lt~~L~~~~~--~v~~iE~d~~~~~~l~~~~~   72 (253)
T TIGR00755        16 SVIQKIVEAANVLEGDVVLEIGPGLGALTEPLLKRAK--KVTAIEIDPRLAEILRKLLS   72 (253)
T ss_pred             HHHHHHHHhcCCCCcCEEEEeCCCCCHHHHHHHHhCC--cEEEEECCHHHHHHHHHHhC
Confidence            3445666666666788999999999999999999986  79999999999999998764

Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase

>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2

Probab=98.11  E-value=4.1e-05  Score=68.04  Aligned_cols=94  Identities=12%  Similarity=0.087  Sum_probs=69.0

Q ss_pred             CCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcC------CC-------------CCCC-CceEEE
Q 019861          177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQE------SN-------------FPKD-SIDAVH  236 (334)
Q Consensus       177 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~------~~-------------~~~~-~fD~V~  236 (334)
                      .+.+||-||.|.|..+..+.+..+..+++.+|+++.+++.+++.+...      ..             -..+ +||+|+
T Consensus        76 ~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~~~yDvIi  155 (246)
T PF01564_consen   76 NPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQEEKYDVII  155 (246)
T ss_dssp             ST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSSST-EEEEE
T ss_pred             CcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhccCCcccEEE
Confidence            468999999999999999998765569999999999999999875421      10             1123 899999


Q ss_pred             eCccccCCCC----HHHHHHHHHHcccCCcEEEEEEec
Q 019861          237 AGAAIHCWSS----PSTGVAEISRVLRPGGVFVGTTYI  270 (334)
Q Consensus       237 ~~~vl~h~~d----~~~~L~~i~r~LkpgG~lii~~~~  270 (334)
                      ....-...+.    -..+++.+++.|+|||++++....
T Consensus       156 ~D~~dp~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~~~~  193 (246)
T PF01564_consen  156 VDLTDPDGPAPNLFTREFYQLCKRRLKPDGVLVLQAGS  193 (246)
T ss_dssp             EESSSTTSCGGGGSSHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred             EeCCCCCCCcccccCHHHHHHHHhhcCCCcEEEEEccC
Confidence            8543222222    147899999999999999987744

5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....

>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes

Probab=98.06  E-value=1.1e-05  Score=68.28  Aligned_cols=95  Identities=20%  Similarity=0.214  Sum_probs=58.4

Q ss_pred             CCCcEEEECCCcCHHHHHHHHcC-CCCeEEEEeCCHHHHHH-------------HHHHHhcCCCCCCCCceEEEeCcccc
Q 019861          177 LGGNIIDASCGSGLFSRIFAKSG-LFSLVVALDYSENMLKQ-------------CYEFVQQESNFPKDSIDAVHAGAAIH  242 (334)
Q Consensus       177 ~~~~vLDiGcG~G~~~~~l~~~~-~~~~v~giD~s~~~~~~-------------a~~~~~~~~~~~~~~fD~V~~~~vl~  242 (334)
                      ++.++||+||++|.|+..+...+ +...|+|+|+.+...-.             ..+.+.....-..+.+|+|++.....
T Consensus        23 ~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~~~~~~~~~i~~d~~~~~~~~~i~~~~~~~~~~~dlv~~D~~~~  102 (181)
T PF01728_consen   23 KGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPMDPLQNVSFIQGDITNPENIKDIRKLLPESGEKFDLVLSDMAPN  102 (181)
T ss_dssp             TTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSSTGS-TTEEBTTGGGEEEEHSHHGGGSHGTTTCSESEEEE-----
T ss_pred             cccEEEEcCCcccceeeeeeecccccceEEEEeccccccccceeeeecccchhhHHHhhhhhccccccCcceeccccccC
Confidence            45899999999999999999997 44699999998751000             00011111011226899999987443


Q ss_pred             CCCC----H-------HHHHHHHHHcccCCcEEEEEEecc
Q 019861          243 CWSS----P-------STGVAEISRVLRPGGVFVGTTYIV  271 (334)
Q Consensus       243 h~~d----~-------~~~L~~i~r~LkpgG~lii~~~~~  271 (334)
                      ...+    .       ...|.-+...|+|||.+++.....
T Consensus       103 ~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~~~~  142 (181)
T PF01728_consen  103 VSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIKVFKG  142 (181)
T ss_dssp             --SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEEESSS
T ss_pred             CCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEEeccC
Confidence            3322    1       234555667899999999877763

RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....

>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase

Probab=98.05  E-value=0.00013  Score=61.65  Aligned_cols=97  Identities=21%  Similarity=0.237  Sum_probs=66.0

Q ss_pred             HHHHHHHcccCCCCCCcEEEECCCcCHHHHHHHHcCCCCe---------EEEEeCCHHHHHHHHHHHhcCC---------
Q 019861          164 KEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSL---------VVALDYSENMLKQCYEFVQQES---------  225 (334)
Q Consensus       164 ~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~---------v~giD~s~~~~~~a~~~~~~~~---------  225 (334)
                      .+...+.......++..|||--||+|.++...+..+....         ++|.|+++.+++.+++++....         
T Consensus        15 ~lA~~ll~la~~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~~~i~~~~   94 (179)
T PF01170_consen   15 TLAAALLNLAGWRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVEDYIDFIQ   94 (179)
T ss_dssp             HHHHHHHHHTT--TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-CGGEEEEE
T ss_pred             HHHHHHHHHhCCCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccCCceEEEe
Confidence            3344555566666788999999999999988877655445         8899999999999999876432         


Q ss_pred             ------CCCCCCceEEEeCccccC-CCC-------HHHHHHHHHHcccC
Q 019861          226 ------NFPKDSIDAVHAGAAIHC-WSS-------PSTGVAEISRVLRP  260 (334)
Q Consensus       226 ------~~~~~~fD~V~~~~vl~h-~~d-------~~~~L~~i~r~Lkp  260 (334)
                            ++.++++|+|+++-=.-. +.+       ...+++++.++|++
T Consensus        95 ~D~~~l~~~~~~~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~  143 (179)
T PF01170_consen   95 WDARELPLPDGSVDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKP  143 (179)
T ss_dssp             --GGGGGGTTSBSCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTT
T ss_pred             cchhhcccccCCCCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCC
Confidence                  345678999998521110 011       13578889999998

It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.

>TIGR00095 RNA methyltransferase, RsmD family

Probab=98.05  E-value=0.0001  Score=62.86  Aligned_cols=92  Identities=12%  Similarity=0.068  Sum_probs=61.1

Q ss_pred             CCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCCC-----------------C-CCC-CceEEEe
Q 019861          177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESN-----------------F-PKD-SIDAVHA  237 (334)
Q Consensus       177 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~-----------------~-~~~-~fD~V~~  237 (334)
                      .+.++||++||+|.++..++.+|. ..++++|.++.+++.+++++....-                 + ... .||+|+.
T Consensus        49 ~g~~vLDLfaGsG~lglea~srga-~~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~l~~~~~~~~~~dvv~~  127 (189)
T TIGR00095        49 QGAHLLDVFAGSGLLGEEALSRGA-KVAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALRALKFLAKKPTFDNVIYL  127 (189)
T ss_pred             CCCEEEEecCCCcHHHHHHHhCCC-CEEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHHHHHHhhccCCCceEEEE
Confidence            468999999999999999999985 5899999999999999887643210                 1 112 3666666


Q ss_pred             CccccCCCCHHHHHHHHH--HcccCCcEEEEEEec
Q 019861          238 GAAIHCWSSPSTGVAEIS--RVLRPGGVFVGTTYI  270 (334)
Q Consensus       238 ~~vl~h~~d~~~~L~~i~--r~LkpgG~lii~~~~  270 (334)
                      .=-.. .......+..+.  .+|+++|.+++....
T Consensus       128 DPPy~-~~~~~~~l~~l~~~~~l~~~~iiv~E~~~  161 (189)
T TIGR00095       128 DPPFF-NGALQALLELCENNWILEDTVLIVVEEDR  161 (189)
T ss_pred             CcCCC-CCcHHHHHHHHHHCCCCCCCeEEEEEecC
Confidence            32111 112233444443  357788877776543

This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.

>KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism]

Probab=98.04  E-value=6.2e-05  Score=67.32  Aligned_cols=142  Identities=18%  Similarity=0.131  Sum_probs=98.3

Q ss_pred             HHHHHHHcccCC----CCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHH---hcCC-----------
Q 019861          164 KEFELMKGYLKP----VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFV---QQES-----------  225 (334)
Q Consensus       164 ~~~~~l~~~l~~----~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~---~~~~-----------  225 (334)
                      ...+.+..+.+.    ...-+||--|||.|.++..++..|+  .+.|-++|--|+--..=.+   ....           
T Consensus       133 pii~~l~~lfp~~~~~r~ki~iLvPGaGlGRLa~dla~~G~--~~qGNEfSy~Mli~S~FiLN~~~~~nq~~IYPfIh~~  210 (369)
T KOG2798|consen  133 PIIEELNSLFPSRGKERTKIRILVPGAGLGRLAYDLACLGF--KCQGNEFSYFMLICSSFILNYCKQENQFTIYPFIHQY  210 (369)
T ss_pred             hHHHHHHhhCCCccccccCceEEecCCCchhHHHHHHHhcc--cccccHHHHHHHHHHHHHHHhhccCCcEEEEeeeecc
Confidence            344555555543    2346899999999999999999998  7888888877664322111   1000           


Q ss_pred             ----------------------------CC---------------CCCCceEEEeCccccCCCCHHHHHHHHHHcccCCc
Q 019861          226 ----------------------------NF---------------PKDSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGG  262 (334)
Q Consensus       226 ----------------------------~~---------------~~~~fD~V~~~~vl~h~~d~~~~L~~i~r~LkpgG  262 (334)
                                                  +|               ..+.||+|+.++.+..-.|....|+.|..+|||||
T Consensus       211 sn~~~~dDQlrpi~~PD~~p~~~~~~~~~fsicaGDF~evy~~s~~~~~~d~VvTcfFIDTa~NileYi~tI~~iLk~GG  290 (369)
T KOG2798|consen  211 SNSLSRDDQLRPISIPDIHPASSNGNTGSFSICAGDFLEVYGTSSGAGSYDVVVTCFFIDTAHNILEYIDTIYKILKPGG  290 (369)
T ss_pred             ccccccccccccccCccccccccCCCCCCccccccceeEEecCcCCCCccceEEEEEEeechHHHHHHHHHHHHhccCCc
Confidence                                        01               12469999999988888888999999999999999


Q ss_pred             EEEEEEeccCCCCCchHHHHHHHHHhhhhcCccCCCCHHHHHHHHHhCCCcEEEE
Q 019861          263 VFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLCRACGLVDFKC  317 (334)
Q Consensus       263 ~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~l~~ll~~~Gf~~v~~  317 (334)
                      +.+=..|..-........          .....--++.+++..+.+..||++++.
T Consensus       291 vWiNlGPLlYHF~d~~g~----------~~~~siEls~edl~~v~~~~GF~~~ke  335 (369)
T KOG2798|consen  291 VWINLGPLLYHFEDTHGV----------ENEMSIELSLEDLKRVASHRGFEVEKE  335 (369)
T ss_pred             EEEeccceeeeccCCCCC----------cccccccccHHHHHHHHHhcCcEEEEe
Confidence            988766654322111000          011223578999999999999998874

>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G

Probab=98.02  E-value=0.00011  Score=62.13  Aligned_cols=85  Identities=18%  Similarity=0.172  Sum_probs=66.0

Q ss_pred             cEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHH---HHhcCC----------CCCCCCceEEEeCccccCCCC
Q 019861          180 NIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYE---FVQQES----------NFPKDSIDAVHAGAAIHCWSS  246 (334)
Q Consensus       180 ~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~---~~~~~~----------~~~~~~fD~V~~~~vl~h~~d  246 (334)
                      +++|||+|.|.-+..++-..|..+++.+|.+..-+...+.   .+.-..          .....+||+|++..+    ..
T Consensus        51 ~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L~L~nv~v~~~R~E~~~~~~~fd~v~aRAv----~~  126 (184)
T PF02527_consen   51 KVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVRELGLSNVEVINGRAEEPEYRESFDVVTARAV----AP  126 (184)
T ss_dssp             EEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHHT-SSEEEEES-HHHTTTTT-EEEEEEESS----SS
T ss_pred             eEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHhCCCCEEEEEeeecccccCCCccEEEeehh----cC
Confidence            7999999999999999988888899999999865555443   332211          245688999999986    45


Q ss_pred             HHHHHHHHHHcccCCcEEEEEE
Q 019861          247 PSTGVAEISRVLRPGGVFVGTT  268 (334)
Q Consensus       247 ~~~~L~~i~r~LkpgG~lii~~  268 (334)
                      ...++.-+...|++||.+++.-
T Consensus       127 l~~l~~~~~~~l~~~G~~l~~K  148 (184)
T PF02527_consen  127 LDKLLELARPLLKPGGRLLAYK  148 (184)
T ss_dssp             HHHHHHHHGGGEEEEEEEEEEE
T ss_pred             HHHHHHHHHHhcCCCCEEEEEc
Confidence            6788889999999999988854

Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.

>COG4627 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.98  E-value=8e-07  Score=71.14  Aligned_cols=50  Identities=28%  Similarity=0.389  Sum_probs=44.2

Q ss_pred             cCCCCCCCCceEEEeCccccCCCC--HHHHHHHHHHcccCCcEEEEEEeccC
Q 019861          223 QESNFPKDSIDAVHAGAAIHCWSS--PSTGVAEISRVLRPGGVFVGTTYIVD  272 (334)
Q Consensus       223 ~~~~~~~~~fD~V~~~~vl~h~~d--~~~~L~~i~r~LkpgG~lii~~~~~~  272 (334)
                      ....|.+++.|+|.+.+|+||+.-  -..+++++++.|||||+|-+..|...
T Consensus        39 ~e~~F~dns~d~iyaeHvlEHlt~~Eg~~alkechr~Lrp~G~LriAvPdl~   90 (185)
T COG4627          39 NESMFEDNSVDAIYAEHVLEHLTYDEGTSALKECHRFLRPGGKLRIAVPDLK   90 (185)
T ss_pred             hhccCCCcchHHHHHHHHHHHHhHHHHHHHHHHHHHHhCcCcEEEEEcCCcc
Confidence            345789999999999999999984  35889999999999999999999874

>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family

Probab=97.91  E-value=0.00041  Score=63.79  Aligned_cols=99  Identities=15%  Similarity=0.124  Sum_probs=68.8

Q ss_pred             HHHcccCCCCCCcEEEECCCcCHHHHHHHH----cCCCCeEEEEeCCHHHHHHHHHHHh-cCCC----------------
Q 019861          168 LMKGYLKPVLGGNIIDASCGSGLFSRIFAK----SGLFSLVVALDYSENMLKQCYEFVQ-QESN----------------  226 (334)
Q Consensus       168 ~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~----~~~~~~v~giD~s~~~~~~a~~~~~-~~~~----------------  226 (334)
                      .|...++.  +..|+|+|||+|.=+..|.+    .+....|+++|+|..+++.+.+++. ..-|                
T Consensus        69 ~Ia~~i~~--~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~p~l~v~~l~gdy~~~l~  146 (319)
T TIGR03439        69 DIAASIPS--GSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNFSHVRCAGLLGTYDDGLA  146 (319)
T ss_pred             HHHHhcCC--CCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccCCCeEEEEEEecHHHHHh
Confidence            34444443  56899999999975444433    3334589999999999999998877 3211                


Q ss_pred             -CCC----CCceEEEeC-ccccCCCCHH--HHHHHHHH-cccCCcEEEEEE
Q 019861          227 -FPK----DSIDAVHAG-AAIHCWSSPS--TGVAEISR-VLRPGGVFVGTT  268 (334)
Q Consensus       227 -~~~----~~fD~V~~~-~vl~h~~d~~--~~L~~i~r-~LkpgG~lii~~  268 (334)
                       ++.    ....+|+.. .+|-++...+  .+|+++++ .|+|||.+++..
T Consensus       147 ~l~~~~~~~~~r~~~flGSsiGNf~~~ea~~fL~~~~~~~l~~~d~lLiG~  197 (319)
T TIGR03439       147 WLKRPENRSRPTTILWLGSSIGNFSRPEAAAFLAGFLATALSPSDSFLIGL  197 (319)
T ss_pred             hcccccccCCccEEEEeCccccCCCHHHHHHHHHHHHHhhCCCCCEEEEec
Confidence             111    234555554 4777776554  78999999 999999988854

This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).

>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed

Probab=97.91  E-value=0.00011  Score=71.05  Aligned_cols=98  Identities=16%  Similarity=0.163  Sum_probs=72.5

Q ss_pred             CCCCCCcEEEECCCcCHHHHHHHHcC-CCCeEEEEeCCHHHHHHHHHHHhcCCC---------------CCCCCceEEEe
Q 019861          174 KPVLGGNIIDASCGSGLFSRIFAKSG-LFSLVVALDYSENMLKQCYEFVQQESN---------------FPKDSIDAVHA  237 (334)
Q Consensus       174 ~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~~v~giD~s~~~~~~a~~~~~~~~~---------------~~~~~fD~V~~  237 (334)
                      .+.++.+|||+++|.|.=+.+++... ..+.+++.|+++.-++..++++...+-               ...+.||.|+.
T Consensus       110 ~~~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~~nv~v~~~D~~~~~~~~~~~fD~ILv  189 (470)
T PRK11933        110 DDNAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGVSNVALTHFDGRVFGAALPETFDAILL  189 (470)
T ss_pred             CCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCchhhhhhhchhhcCeEEE
Confidence            56778999999999999888888763 245899999999999999887764320               11356999994


Q ss_pred             ----C--ccccCCCCH----------------HHHHHHHHHcccCCcEEEEEEecc
Q 019861          238 ----G--AAIHCWSSP----------------STGVAEISRVLRPGGVFVGTTYIV  271 (334)
Q Consensus       238 ----~--~vl~h~~d~----------------~~~L~~i~r~LkpgG~lii~~~~~  271 (334)
                          +  .++..-++.                ..+|..+.+.|||||+|+-+|-..
T Consensus       190 DaPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTCT~  245 (470)
T PRK11933        190 DAPCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYSTCTL  245 (470)
T ss_pred             cCCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECCCC
Confidence                3  223322211                467899999999999998777654

>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family

Probab=97.90  E-value=4.8e-05  Score=65.19  Aligned_cols=92  Identities=24%  Similarity=0.322  Sum_probs=63.2

Q ss_pred             HHHcccCCCCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCC-------------CC-CCCCce
Q 019861          168 LMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES-------------NF-PKDSID  233 (334)
Q Consensus       168 ~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~-------------~~-~~~~fD  233 (334)
                      .+.+.+.  ++..|||+-||.|.++..+++.+....|+++|+++.+++.++++.....             .+ +.+.+|
T Consensus        94 Ri~~~v~--~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~~~~~~~~~~d  171 (200)
T PF02475_consen   94 RIANLVK--PGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLNKVENRIEVINGDAREFLPEGKFD  171 (200)
T ss_dssp             HHHTC----TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHTT-TTTEEEEES-GGG---TT-EE
T ss_pred             HHHhcCC--cceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHcCCCCeEEEEcCCHHHhcCccccC
Confidence            3444444  4789999999999999999985555689999999999999998765432             12 267899


Q ss_pred             EEEeCccccCCCCHHHHHHHHHHcccCCcEEE
Q 019861          234 AVHAGAAIHCWSSPSTGVAEISRVLRPGGVFV  265 (334)
Q Consensus       234 ~V~~~~vl~h~~d~~~~L~~i~r~LkpgG~li  265 (334)
                      -|+|..-    ..-..+|..+.+++++||++-
T Consensus       172 rvim~lp----~~~~~fl~~~~~~~~~~g~ih  199 (200)
T PF02475_consen  172 RVIMNLP----ESSLEFLDAALSLLKEGGIIH  199 (200)
T ss_dssp             EEEE--T----SSGGGGHHHHHHHEEEEEEEE
T ss_pred             EEEECCh----HHHHHHHHHHHHHhcCCcEEE
Confidence            8888642    122357888999999998763

Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.

>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]

Probab=97.89  E-value=0.00018  Score=57.81  Aligned_cols=91  Identities=30%  Similarity=0.488  Sum_probs=65.4

Q ss_pred             EEEECCCcCHHHHHHHHcCCC-CeEEEEeCCHHHHHHHHHHHhc--C--------------CCCCC-CCceEEEeCcccc
Q 019861          181 IIDASCGSGLFSRIFAKSGLF-SLVVALDYSENMLKQCYEFVQQ--E--------------SNFPK-DSIDAVHAGAAIH  242 (334)
Q Consensus       181 vLDiGcG~G~~~~~l~~~~~~-~~v~giD~s~~~~~~a~~~~~~--~--------------~~~~~-~~fD~V~~~~vl~  242 (334)
                      ++|+|||+|... .+...... ..++|+|+++.++..++.....  .              .++.. ..||++ ......
T Consensus        52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~-~~~~~~  129 (257)
T COG0500          52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEGAGLGLVDFVVADALGGVLPFEDSASFDLV-ISLLVL  129 (257)
T ss_pred             eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhhcCCCceEEEEeccccCCCCCCCCCceeEE-eeeeeh
Confidence            999999999866 33333221 3789999999988886554311  0              23344 479999 555544


Q ss_pred             CCCCHHHHHHHHHHcccCCcEEEEEEeccCC
Q 019861          243 CWSSPSTGVAEISRVLRPGGVFVGTTYIVDG  273 (334)
Q Consensus       243 h~~d~~~~L~~i~r~LkpgG~lii~~~~~~~  273 (334)
                      |..++...+.++.+.|+|+|.+++.......
T Consensus       130 ~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~  160 (257)
T COG0500         130 HLLPPAKALRELLRVLKPGGRLVLSDLLRDG  160 (257)
T ss_pred             hcCCHHHHHHHHHHhcCCCcEEEEEeccCCC
Confidence            4444889999999999999999998887653

>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]

Probab=97.88  E-value=8.8e-05  Score=69.72  Aligned_cols=93  Identities=20%  Similarity=0.184  Sum_probs=73.6

Q ss_pred             CCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCCC--------------------CCCCCceEEEe
Q 019861          178 GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESN--------------------FPKDSIDAVHA  237 (334)
Q Consensus       178 ~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~--------------------~~~~~fD~V~~  237 (334)
                      |++|||+=|=||.++..++..|. .+|+++|.|...++.|++++.-.+-                    -...+||+|++
T Consensus       218 GkrvLNlFsYTGgfSv~Aa~gGA-~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~l~~~~~~g~~fDlIil  296 (393)
T COG1092         218 GKRVLNLFSYTGGFSVHAALGGA-SEVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVFKWLRKAERRGEKFDLIIL  296 (393)
T ss_pred             CCeEEEecccCcHHHHHHHhcCC-CceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhHHHHHHHHHhcCCcccEEEE
Confidence            88999999999999999999874 5999999999999999998765431                    11358999997


Q ss_pred             C---------ccccCCCCHHHHHHHHHHcccCCcEEEEEEecc
Q 019861          238 G---------AAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIV  271 (334)
Q Consensus       238 ~---------~vl~h~~d~~~~L~~i~r~LkpgG~lii~~~~~  271 (334)
                      .         ....-..+-..++..+.++|+|||.+++.+...
T Consensus       297 DPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s~~~  339 (393)
T COG1092         297 DPPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSSCSR  339 (393)
T ss_pred             CCcccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEecCC
Confidence            3         111111244578899999999999999977654

>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family

Probab=97.88  E-value=8.5e-05  Score=73.44  Aligned_cols=64  Identities=22%  Similarity=0.259  Sum_probs=45.2

Q ss_pred             CCCcHHHHHHHHcccCCC-------CCCcEEEECCCcCHHHHHHHHcCC--------CCeEEEEeCCHHHHHHHHHHHh
Q 019861          159 FPGPEKEFELMKGYLKPV-------LGGNIIDASCGSGLFSRIFAKSGL--------FSLVVALDYSENMLKQCYEFVQ  222 (334)
Q Consensus       159 ~~~~~~~~~~l~~~l~~~-------~~~~vLDiGcG~G~~~~~l~~~~~--------~~~v~giD~s~~~~~~a~~~~~  222 (334)
                      |.-|....+.+...+...       ...+|||.|||+|.++..+.....        ...++|+|+++..+..++.++.
T Consensus         6 fyTP~~ia~~mv~~~~~~~~~~~~~~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~   84 (524)
T TIGR02987         6 FFTPPDIAKAMVANLVNEIGKNDKSTKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLG   84 (524)
T ss_pred             cCCcHHHHHHHHHHHhhhcchhhcccceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHh
Confidence            344555555555544211       345899999999999988876532        2578999999999999987654

Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.

>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH

Probab=97.84  E-value=5.4e-05  Score=64.10  Aligned_cols=106  Identities=14%  Similarity=0.176  Sum_probs=71.4

Q ss_pred             HHHHHHHcccCC--CCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCC----------------
Q 019861          164 KEFELMKGYLKP--VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES----------------  225 (334)
Q Consensus       164 ~~~~~l~~~l~~--~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~----------------  225 (334)
                      +..+.+...+..  ..+.++||+-||+|.++..+..+|. .+|+.+|.++..++..+++++...                
T Consensus        27 rvrealFniL~~~~~~g~~vLDLFaGSGalGlEALSRGA-~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~~~~l  105 (183)
T PF03602_consen   27 RVREALFNILQPRNLEGARVLDLFAGSGALGLEALSRGA-KSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDAFKFL  105 (183)
T ss_dssp             HHHHHHHHHHHCH-HTT-EEEETT-TTSHHHHHHHHTT--SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSHHHHH
T ss_pred             HHHHHHHHHhcccccCCCeEEEcCCccCccHHHHHhcCC-CeEEEEECCHHHHHHHHHHHHHhCCCcceeeeccCHHHHH
Confidence            333444444432  3578999999999999999999884 599999999999999998766322                


Q ss_pred             -CC--CCCCceEEEeCccccCCCC-HHHHHHHHH--HcccCCcEEEEEEecc
Q 019861          226 -NF--PKDSIDAVHAGAAIHCWSS-PSTGVAEIS--RVLRPGGVFVGTTYIV  271 (334)
Q Consensus       226 -~~--~~~~fD~V~~~~vl~h~~d-~~~~L~~i~--r~LkpgG~lii~~~~~  271 (334)
                       ..  ....||+|++.==.. ... ...++..+.  .+|+++|.+++.....
T Consensus       106 ~~~~~~~~~fDiIflDPPY~-~~~~~~~~l~~l~~~~~l~~~~~ii~E~~~~  156 (183)
T PF03602_consen  106 LKLAKKGEKFDIIFLDPPYA-KGLYYEELLELLAENNLLNEDGLIIIEHSKK  156 (183)
T ss_dssp             HHHHHCTS-EEEEEE--STT-SCHHHHHHHHHHHHTTSEEEEEEEEEEEETT
T ss_pred             HhhcccCCCceEEEECCCcc-cchHHHHHHHHHHHCCCCCCCEEEEEEecCC
Confidence             01  367899999852111 112 256677776  7899999999987764

They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.

>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=97.83  E-value=0.00018  Score=61.79  Aligned_cols=100  Identities=17%  Similarity=0.149  Sum_probs=74.5

Q ss_pred             HHHcccCCCCCCcEEEECCCcCHHHHHHHHcCC-CCeEEEEeCCHHHHHHHHHHHhcCC---------------------
Q 019861          168 LMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGL-FSLVVALDYSENMLKQCYEFVQQES---------------------  225 (334)
Q Consensus       168 ~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~-~~~v~giD~s~~~~~~a~~~~~~~~---------------------  225 (334)
                      ++...+....+++.||||.=+|+.+..++...| .++|+++|+++...+.+.+..+..+                     
T Consensus        64 fl~~li~~~~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a~esLd~l~~  143 (237)
T KOG1663|consen   64 FLQMLIRLLNAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGPALESLDELLA  143 (237)
T ss_pred             HHHHHHHHhCCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccccceeeeeecchhhhHHHHHh
Confidence            444444445568999999999998888887754 4799999999999999877654322                     


Q ss_pred             CCCCCCceEEEeCccccCCC-CHHHHHHHHHHcccCCcEEEEEEecc
Q 019861          226 NFPKDSIDAVHAGAAIHCWS-SPSTGVAEISRVLRPGGVFVGTTYIV  271 (334)
Q Consensus       226 ~~~~~~fD~V~~~~vl~h~~-d~~~~L~~i~r~LkpgG~lii~~~~~  271 (334)
                      ..+.++||+++..+    +. +-.....++.++||+||++++--...
T Consensus       144 ~~~~~tfDfaFvDa----dK~nY~~y~e~~l~Llr~GGvi~~DNvl~  186 (237)
T KOG1663|consen  144 DGESGTFDFAFVDA----DKDNYSNYYERLLRLLRVGGVIVVDNVLW  186 (237)
T ss_pred             cCCCCceeEEEEcc----chHHHHHHHHHHHhhcccccEEEEecccc
Confidence            23468999998653    33 33477889999999999998854333

>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=97.82  E-value=0.00033  Score=59.75  Aligned_cols=107  Identities=22%  Similarity=0.212  Sum_probs=67.1

Q ss_pred             HHHHcccCCCCCCcEEEECCCcCHHHHHHHHcC-CCCeEEEEeCCHHHHHHHHHHHhcC-----------CCCCCCCceE
Q 019861          167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSG-LFSLVVALDYSENMLKQCYEFVQQE-----------SNFPKDSIDA  234 (334)
Q Consensus       167 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~~v~giD~s~~~~~~a~~~~~~~-----------~~~~~~~fD~  234 (334)
                      +...++--..++.+|+|+|+..|.|+..+++.. ....|+|+|+.+--.-..-..++.+           ..+....+|+
T Consensus        35 el~~k~~i~~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~~~~~V~~iq~d~~~~~~~~~l~~~l~~~~~Dv  114 (205)
T COG0293          35 ELNEKFKLFKPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMKPIPGVIFLQGDITDEDTLEKLLEALGGAPVDV  114 (205)
T ss_pred             HHHHhcCeecCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECcccccCCCceEEeeeccCccHHHHHHHHcCCCCcce
Confidence            333333223457899999999999999998873 3346999998773221111111100           0233455899


Q ss_pred             EEeCccc--------cCCCC---HHHHHHHHHHcccCCcEEEEEEeccCC
Q 019861          235 VHAGAAI--------HCWSS---PSTGVAEISRVLRPGGVFVGTTYIVDG  273 (334)
Q Consensus       235 V~~~~vl--------~h~~d---~~~~L~~i~r~LkpgG~lii~~~~~~~  273 (334)
                      |++...-        .|...   -..++.-+..+|+|||.+++-.+-.+.
T Consensus       115 V~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K~fqg~~  164 (205)
T COG0293         115 VLSDMAPNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFVAKVFQGED  164 (205)
T ss_pred             EEecCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeEEEEEEeCCC
Confidence            9975432        22211   135677788899999999998887653

>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins

Probab=97.81  E-value=0.0004  Score=59.83  Aligned_cols=121  Identities=12%  Similarity=0.073  Sum_probs=74.1

Q ss_pred             EEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCCC--------------CCCCC-ceEEEeCccccCCC
Q 019861          181 IIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESN--------------FPKDS-IDAVHAGAAIHCWS  245 (334)
Q Consensus       181 vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~--------------~~~~~-fD~V~~~~vl~h~~  245 (334)
                      |.||||-.|++...|.+.+.-..++++|+++..++.|++++.....              ++.+. .|+|+...+=-.  
T Consensus         1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL~~l~~~e~~d~ivIAGMGG~--   78 (205)
T PF04816_consen    1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDGLEVLKPGEDVDTIVIAGMGGE--   78 (205)
T ss_dssp             EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SGGGG--GGG---EEEEEEE-HH--
T ss_pred             CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCcccccCCCCCCCEEEEecCCHH--
Confidence            6899999999999999998766899999999999999998876431              22222 445444332000  


Q ss_pred             CHHHHHHHHHHcccCCcEEEEEEeccCCCCCchHHHHHHHHHhhhhcCccCCCCHHHHHHHHHhCCCcEEEE---eecCc
Q 019861          246 SPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLCRACGLVDFKC---TRNRG  322 (334)
Q Consensus       246 d~~~~L~~i~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~l~~ll~~~Gf~~v~~---~~~g~  322 (334)
                      -...+|.+....++....+++. |+                           -....++++|.+.||..++.   ...+.
T Consensus        79 lI~~ILe~~~~~~~~~~~lILq-P~---------------------------~~~~~LR~~L~~~gf~I~~E~lv~e~~~  130 (205)
T PF04816_consen   79 LIIEILEAGPEKLSSAKRLILQ-PN---------------------------THAYELRRWLYENGFEIIDEDLVEENGR  130 (205)
T ss_dssp             HHHHHHHHTGGGGTT--EEEEE-ES---------------------------S-HHHHHHHHHHTTEEEEEEEEEEETTE
T ss_pred             HHHHHHHhhHHHhccCCeEEEe-CC---------------------------CChHHHHHHHHHCCCEEEEeEEEeECCE
Confidence            0123444444444443444442 22                           24678999999999998883   34454


Q ss_pred             -EEEEEEEcC
Q 019861          323 -FVMFTATKP  331 (334)
Q Consensus       323 -~~~~~a~K~  331 (334)
                       +-++.+.+.
T Consensus       131 ~YeIi~~~~~  140 (205)
T PF04816_consen  131 FYEIIVAERG  140 (205)
T ss_dssp             EEEEEEEEES
T ss_pred             EEEEEEEEeC
Confidence             445555443

; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.

>COG4798 Predicted methyltransferase [General function prediction only]

Probab=97.75  E-value=0.00042  Score=57.94  Aligned_cols=135  Identities=21%  Similarity=0.180  Sum_probs=87.5

Q ss_pred             HcccCCCCCCcEEEECCCcCHHHHHHHHc-CCCCeEEEEeCCHHH----------HHHHHHHHhcC---------CCCCC
Q 019861          170 KGYLKPVLGGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENM----------LKQCYEFVQQE---------SNFPK  229 (334)
Q Consensus       170 ~~~l~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~~v~giD~s~~~----------~~~a~~~~~~~---------~~~~~  229 (334)
                      +.....+++.+|+|+=.|.|+|++.++.. ++.+.|+++-+.+..          -..+++....+         ...+.
T Consensus        41 L~FaGlkpg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~~~aN~e~~~~~~~A~~~p  120 (238)
T COG4798          41 LAFAGLKPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAAREPVYANVEVIGKPLVALGAP  120 (238)
T ss_pred             eEEeccCCCCEEEEEecCCccHhhhhchhcCCceeEEEecchhhcccccchhhhhhhhhhhhhhhhhhhhCCcccccCCC
Confidence            44556778999999999999999999887 666788887554431          11111110000         01244


Q ss_pred             CCceEEEeCcccc--CCC-----CHHHHHHHHHHcccCCcEEEEEEeccCCCCCchHHHHHHHHHhhhhcCccCCCCHHH
Q 019861          230 DSIDAVHAGAAIH--CWS-----SPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSERE  302 (334)
Q Consensus       230 ~~fD~V~~~~vl~--h~~-----d~~~~L~~i~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~  302 (334)
                      +..|++.....-|  |..     .-..+-+++.+.|||||++++.+...+......            .....++.+...
T Consensus       121 q~~d~~~~~~~yhdmh~k~i~~~~A~~vna~vf~~LKPGGv~~V~dH~a~pG~~~~------------dt~~~~ri~~a~  188 (238)
T COG4798         121 QKLDLVPTAQNYHDMHNKNIHPATAAKVNAAVFKALKPGGVYLVEDHRADPGSGLS------------DTITLHRIDPAV  188 (238)
T ss_pred             CcccccccchhhhhhhccccCcchHHHHHHHHHHhcCCCcEEEEEeccccCCCChh------------hhhhhcccChHH
Confidence            5667776532222  111     235788999999999999999888764321111            112446778999


Q ss_pred             HHHHHHhCCCcEEE
Q 019861          303 IEDLCRACGLVDFK  316 (334)
Q Consensus       303 l~~ll~~~Gf~~v~  316 (334)
                      +.+..+.+||+..-
T Consensus       189 V~a~veaaGFkl~a  202 (238)
T COG4798         189 VIAEVEAAGFKLEA  202 (238)
T ss_pred             HHHHHHhhcceeee
Confidence            99999999997654

>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]

Probab=97.73  E-value=0.0026  Score=54.75  Aligned_cols=137  Identities=12%  Similarity=0.142  Sum_probs=84.1

Q ss_pred             cCCCCCCcEEEECCCcCHHHHHHHHc-CCCCeEEEEeCCHHHHHHHHHHHhcCC----------------CCCCCCceEE
Q 019861          173 LKPVLGGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQQES----------------NFPKDSIDAV  235 (334)
Q Consensus       173 l~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~~v~giD~s~~~~~~a~~~~~~~~----------------~~~~~~fD~V  235 (334)
                      +...++.+||-+|.++|....++++- ++.+.|+++++++...+..-...+...                .+ -+.+|+|
T Consensus        69 ~~ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R~NIiPIl~DAr~P~~Y~~l-v~~VDvI  147 (229)
T PF01269_consen   69 IPIKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKRPNIIPILEDARHPEKYRML-VEMVDVI  147 (229)
T ss_dssp             -S--TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHSTTEEEEES-TTSGGGGTTT-S--EEEE
T ss_pred             cCCCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccCCceeeeeccCCChHHhhcc-cccccEE
Confidence            45667899999999999999999887 557799999999965544432222111                12 2479999


Q ss_pred             EeCccccCCCCH-HHHHHHHHHcccCCcEEEEEEeccCCCCCchHHHHHHHHHhhhhcCccCCCCHHHHHHHHHhCCCcE
Q 019861          236 HAGAAIHCWSSP-STGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLCRACGLVD  314 (334)
Q Consensus       236 ~~~~vl~h~~d~-~~~L~~i~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~l~~ll~~~Gf~~  314 (334)
                      ++.-.   -++. .-++..+...||+||.++++.-.........+- .                .-.+-.+.|++.||+.
T Consensus       148 ~~DVa---Qp~Qa~I~~~Na~~fLk~gG~~~i~iKa~siD~t~~p~-~----------------vf~~e~~~L~~~~~~~  207 (229)
T PF01269_consen  148 FQDVA---QPDQARIAALNARHFLKPGGHLIISIKARSIDSTADPE-E----------------VFAEEVKKLKEEGFKP  207 (229)
T ss_dssp             EEE-S---STTHHHHHHHHHHHHEEEEEEEEEEEEHHHH-SSSSHH-H----------------HHHHHHHHHHCTTCEE
T ss_pred             EecCC---ChHHHHHHHHHHHhhccCCcEEEEEEecCcccCcCCHH-H----------------HHHHHHHHHHHcCCCh
Confidence            87643   1333 456777888999999999876543111011110 0                0123345678899999


Q ss_pred             EEEeecC----cEEEEEEEc
Q 019861          315 FKCTRNR----GFVMFTATK  330 (334)
Q Consensus       315 v~~~~~g----~~~~~~a~K  330 (334)
                      .+.....    .+.+++++.
T Consensus       208 ~e~i~LePy~~dH~~vv~~y  227 (229)
T PF01269_consen  208 LEQITLEPYERDHAMVVGRY  227 (229)
T ss_dssp             EEEEE-TTTSTTEEEEEEEE
T ss_pred             heEeccCCCCCCcEEEEEEe
Confidence            9877553    366666654

It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....

>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional

Probab=97.71  E-value=0.00013  Score=66.12  Aligned_cols=58  Identities=16%  Similarity=0.167  Sum_probs=48.8

Q ss_pred             HHHHHcccCCCCCCcEEEECCCcCHHHHHHHHcCC-CCeEEEEeCCHHHHHHHHHHHhc
Q 019861          166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGL-FSLVVALDYSENMLKQCYEFVQQ  223 (334)
Q Consensus       166 ~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~-~~~v~giD~s~~~~~~a~~~~~~  223 (334)
                      .+.+.+.+.+.++..+||.+||.|..+..+++..+ ...|+|+|.++.+++.+++++..
T Consensus         8 l~Evl~~L~~~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~   66 (296)
T PRK00050          8 LDEVVDALAIKPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKP   66 (296)
T ss_pred             HHHHHHhhCCCCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhcc
Confidence            34556666667788999999999999999999864 57999999999999999987744

>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []

Probab=97.65  E-value=0.00021  Score=61.55  Aligned_cols=101  Identities=16%  Similarity=0.144  Sum_probs=59.0

Q ss_pred             HHHcccCCCCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhc------------------CCCCCC
Q 019861          168 LMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQ------------------ESNFPK  229 (334)
Q Consensus       168 ~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~------------------~~~~~~  229 (334)
                      .+.+.++..++...+|+|||.|....+++........+|||+.+...+.|......                  ...|-+
T Consensus        33 ~il~~~~l~~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~gdfl~  112 (205)
T PF08123_consen   33 KILDELNLTPDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIHGDFLD  112 (205)
T ss_dssp             HHHHHTT--TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEECS-TTT
T ss_pred             HHHHHhCCCCCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeeccCccc
Confidence            34455666778899999999999887777665445799999999888777643221                  011221


Q ss_pred             --------CCceEEEeCccccCCCCHHHHHHHHHHcccCCcEEEEEEe
Q 019861          230 --------DSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTY  269 (334)
Q Consensus       230 --------~~fD~V~~~~vl~h~~d~~~~L~~i~r~LkpgG~lii~~~  269 (334)
                              ...|+|+++...- -++....|.++...||+|.+++...+
T Consensus       113 ~~~~~~~~s~AdvVf~Nn~~F-~~~l~~~L~~~~~~lk~G~~IIs~~~  159 (205)
T PF08123_consen  113 PDFVKDIWSDADVVFVNNTCF-DPDLNLALAELLLELKPGARIISTKP  159 (205)
T ss_dssp             HHHHHHHGHC-SEEEE--TTT--HHHHHHHHHHHTTS-TT-EEEESS-
T ss_pred             cHhHhhhhcCCCEEEEecccc-CHHHHHHHHHHHhcCCCCCEEEECCC
Confidence                    2469999987642 12345667888888999888765433

H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....

>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]

Probab=97.65  E-value=0.00011  Score=58.43  Aligned_cols=56  Identities=18%  Similarity=0.299  Sum_probs=43.4

Q ss_pred             HHHHcccCCCCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhc
Q 019861          167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQ  223 (334)
Q Consensus       167 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~  223 (334)
                      ..+-...+...|+.++|+|||.|.+.....-.+ ...++|+|+++++++.++.+...
T Consensus        38 ~~Ih~TygdiEgkkl~DLgcgcGmLs~a~sm~~-~e~vlGfDIdpeALEIf~rNaeE   93 (185)
T KOG3420|consen   38 YTIHNTYGDIEGKKLKDLGCGCGMLSIAFSMPK-NESVLGFDIDPEALEIFTRNAEE   93 (185)
T ss_pred             HHHHhhhccccCcchhhhcCchhhhHHHhhcCC-CceEEeeecCHHHHHHHhhchHH
Confidence            344455555678999999999999985555544 35899999999999999987654

>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]

Probab=97.64  E-value=0.0018  Score=55.98  Aligned_cols=113  Identities=18%  Similarity=0.086  Sum_probs=76.5

Q ss_pred             CCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHH---HHHhcCC---------CCCC-CC-ceEEEeCccccC
Q 019861          178 GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCY---EFVQQES---------NFPK-DS-IDAVHAGAAIHC  243 (334)
Q Consensus       178 ~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~---~~~~~~~---------~~~~-~~-fD~V~~~~vl~h  243 (334)
                      +.+++|||+|.|.-+.-++-..|..+++-+|....-+...+   ..+.-..         .+.. .. ||+|++..+   
T Consensus        68 ~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~eL~L~nv~i~~~RaE~~~~~~~~~D~vtsRAv---  144 (215)
T COG0357          68 AKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKELGLENVEIVHGRAEEFGQEKKQYDVVTSRAV---  144 (215)
T ss_pred             CCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHHHHHHHHHHhCCCCeEEehhhHhhcccccccCcEEEeehc---
Confidence            57999999999999999887778889999998875544444   3333221         1221 23 999999886   


Q ss_pred             CCCHHHHHHHHHHcccCCcEEEEEEeccCCCCCchHHHHHHHHHhhhhcCccCCCCHHHHHHHHHhCCCcEEEEe
Q 019861          244 WSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLCRACGLVDFKCT  318 (334)
Q Consensus       244 ~~d~~~~L~~i~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~l~~ll~~~Gf~~v~~~  318 (334)
                       .+...++.-+...+++||.+++.-...                ...        -..+.+......|+.+.++.
T Consensus       145 -a~L~~l~e~~~pllk~~g~~~~~k~~~----------------~~~--------e~~e~~~a~~~~~~~~~~~~  194 (215)
T COG0357         145 -ASLNVLLELCLPLLKVGGGFLAYKGLA----------------GKD--------ELPEAEKAILPLGGQVEKVF  194 (215)
T ss_pred             -cchHHHHHHHHHhcccCCcchhhhHHh----------------hhh--------hHHHHHHHHHhhcCcEEEEE
Confidence             445556777888999999876522110                000        13466777788888777744

>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]

Probab=97.64  E-value=0.0003  Score=61.91  Aligned_cols=71  Identities=14%  Similarity=0.156  Sum_probs=57.6

Q ss_pred             HHHHHcccCCCCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCC-------------CCCCCCc
Q 019861          166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES-------------NFPKDSI  232 (334)
Q Consensus       166 ~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~-------------~~~~~~f  232 (334)
                      .+.|.......++..|||||.|+|.++..|.+.+.  +|+++|+++.|+....+++.+..             ..+...|
T Consensus        47 ~~~I~~ka~~k~tD~VLEvGPGTGnLT~~lLe~~k--kVvA~E~Dprmvael~krv~gtp~~~kLqV~~gD~lK~d~P~f  124 (315)
T KOG0820|consen   47 IDQIVEKADLKPTDVVLEVGPGTGNLTVKLLEAGK--KVVAVEIDPRMVAELEKRVQGTPKSGKLQVLHGDFLKTDLPRF  124 (315)
T ss_pred             HHHHHhccCCCCCCEEEEeCCCCCHHHHHHHHhcC--eEEEEecCcHHHHHHHHHhcCCCccceeeEEecccccCCCccc
Confidence            44556666777889999999999999999999987  99999999999999998877543             1223568


Q ss_pred             eEEEeC
Q 019861          233 DAVHAG  238 (334)
Q Consensus       233 D~V~~~  238 (334)
                      |.++++
T Consensus       125 d~cVsN  130 (315)
T KOG0820|consen  125 DGCVSN  130 (315)
T ss_pred             ceeecc
Confidence            888873

>KOG3115 consensus Methyltransferase-like protein [General function prediction only]

Probab=97.63  E-value=0.00012  Score=61.52  Aligned_cols=94  Identities=19%  Similarity=0.241  Sum_probs=66.8

Q ss_pred             CCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCCCCCC-------------------CCceEEEeC
Q 019861          178 GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPK-------------------DSIDAVHAG  238 (334)
Q Consensus       178 ~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~-------------------~~fD~V~~~  238 (334)
                      .-.+.|||||.|.++..|+...|+-.+.|+++--...++.++++.....-+.                   +-|.---.+
T Consensus        61 kvefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr~namk~lpn~f~kgqLs  140 (249)
T KOG3115|consen   61 KVEFADIGCGYGGLLMKLAPKFPDTLILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISVLRTNAMKFLPNFFEKGQLS  140 (249)
T ss_pred             cceEEeeccCccchhhhccccCccceeeeehhhHHHHHHHHHHHHHHhccccccccccceeeeccchhhccchhhhcccc
Confidence            3579999999999999999999988999999998888888887664431111                   111111122


Q ss_pred             ccccCCCCH-------------HHHHHHHHHcccCCcEEEEEEecc
Q 019861          239 AAIHCWSSP-------------STGVAEISRVLRPGGVFVGTTYIV  271 (334)
Q Consensus       239 ~vl~h~~d~-------------~~~L~~i~r~LkpgG~lii~~~~~  271 (334)
                      -.+..++||             ...+.+..-+|++||.++..+-..
T Consensus       141 kmff~fpdpHfk~~khk~rii~~~l~~eyay~l~~gg~~ytitDv~  186 (249)
T KOG3115|consen  141 KMFFLFPDPHFKARKHKWRIITSTLLSEYAYVLREGGILYTITDVK  186 (249)
T ss_pred             cceeecCChhHhhhhccceeechhHHHHHHhhhhcCceEEEEeeHH
Confidence            223444555             256888899999999999876554

>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]

Probab=97.61  E-value=0.00035  Score=61.93  Aligned_cols=57  Identities=12%  Similarity=0.163  Sum_probs=50.3

Q ss_pred             HHHHHHHcccCCCCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHh
Q 019861          164 KEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQ  222 (334)
Q Consensus       164 ~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~  222 (334)
                      ...+.+.+.....++..|||||+|.|.++..|.+.+.  .|+++|+++.+++..++.+.
T Consensus        17 ~v~~kIv~~a~~~~~d~VlEIGpG~GaLT~~Ll~~~~--~v~aiEiD~~l~~~L~~~~~   73 (259)
T COG0030          17 NVIDKIVEAANISPGDNVLEIGPGLGALTEPLLERAA--RVTAIEIDRRLAEVLKERFA   73 (259)
T ss_pred             HHHHHHHHhcCCCCCCeEEEECCCCCHHHHHHHhhcC--eEEEEEeCHHHHHHHHHhcc
Confidence            3456777777777788999999999999999999987  89999999999999998875

>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]

Probab=97.61  E-value=0.00038  Score=62.91  Aligned_cols=90  Identities=18%  Similarity=0.282  Sum_probs=62.7

Q ss_pred             CCCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCC---------------CCCCCCceEEEeCc
Q 019861          175 PVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES---------------NFPKDSIDAVHAGA  239 (334)
Q Consensus       175 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~---------------~~~~~~fD~V~~~~  239 (334)
                      ...++.|||+|||+|.++...+.+|. .+|++++. .+|.++|++.++...               .+ .++.|+|++--
T Consensus       175 DF~~kiVlDVGaGSGILS~FAaqAGA-~~vYAvEA-S~MAqyA~~Lv~~N~~~~rItVI~GKiEdieL-PEk~DviISEP  251 (517)
T KOG1500|consen  175 DFQDKIVLDVGAGSGILSFFAAQAGA-KKVYAVEA-SEMAQYARKLVASNNLADRITVIPGKIEDIEL-PEKVDVIISEP  251 (517)
T ss_pred             ccCCcEEEEecCCccHHHHHHHHhCc-ceEEEEeh-hHHHHHHHHHHhcCCccceEEEccCccccccC-chhccEEEecc
Confidence            34578999999999999999999984 69999996 568888888766542               12 35789999732


Q ss_pred             ---cccCCCCHHHHHHHHHHcccCCcEEEEEE
Q 019861          240 ---AIHCWSSPSTGVAEISRVLRPGGVFVGTT  268 (334)
Q Consensus       240 ---vl~h~~d~~~~L~~i~r~LkpgG~lii~~  268 (334)
                         .|-.-.-.+. .-..++.|+|.|.++=..
T Consensus       252 MG~mL~NERMLEs-Yl~Ark~l~P~GkMfPT~  282 (517)
T KOG1500|consen  252 MGYMLVNERMLES-YLHARKWLKPNGKMFPTV  282 (517)
T ss_pred             chhhhhhHHHHHH-HHHHHhhcCCCCcccCcc
Confidence               2221111122 223569999999877533

>COG2520 Predicted methyltransferase [General function prediction only]

Probab=97.61  E-value=0.0013  Score=60.62  Aligned_cols=99  Identities=21%  Similarity=0.289  Sum_probs=77.8

Q ss_pred             HHHHcccCCCCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCC------C--------CCC-CC
Q 019861          167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES------N--------FPK-DS  231 (334)
Q Consensus       167 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~------~--------~~~-~~  231 (334)
                      ..+......  |.+|||+=+|.|.++..++..+.. .|+++|+|+.+++..++++....      +        .+. +.
T Consensus       180 ~Rva~~v~~--GE~V~DmFAGVGpfsi~~Ak~g~~-~V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~rev~~~~~~  256 (341)
T COG2520         180 ARVAELVKE--GETVLDMFAGVGPFSIPIAKKGRP-KVYAIDINPDAVEYLKENIRLNKVEGRVEPILGDAREVAPELGV  256 (341)
T ss_pred             HHHHhhhcC--CCEEEEccCCcccchhhhhhcCCc-eEEEEecCHHHHHHHHHHHHhcCccceeeEEeccHHHhhhcccc
Confidence            344555554  889999999999999999999862 49999999999999999876442      0        112 67


Q ss_pred             ceEEEeCccccCCCCHHHHHHHHHHcccCCcEEEEEEeccC
Q 019861          232 IDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVD  272 (334)
Q Consensus       232 fD~V~~~~vl~h~~d~~~~L~~i~r~LkpgG~lii~~~~~~  272 (334)
                      +|-|+|...    .+-..++....+.+++||++...+...+
T Consensus       257 aDrIim~~p----~~a~~fl~~A~~~~k~~g~iHyy~~~~e  293 (341)
T COG2520         257 ADRIIMGLP----KSAHEFLPLALELLKDGGIIHYYEFVPE  293 (341)
T ss_pred             CCEEEeCCC----CcchhhHHHHHHHhhcCcEEEEEeccch
Confidence            999998864    3445678889999999999998877654

>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species

Probab=97.59  E-value=0.00044  Score=62.52  Aligned_cols=93  Identities=19%  Similarity=0.191  Sum_probs=66.5

Q ss_pred             CCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCCC-------------------CCCCCceEEEe
Q 019861          177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESN-------------------FPKDSIDAVHA  237 (334)
Q Consensus       177 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~-------------------~~~~~fD~V~~  237 (334)
                      .+++|||+=|=+|.++.+++..|. .+|+.+|.|..+++.+++++....-                   -..++||+|++
T Consensus       123 ~gkrvLnlFsYTGgfsv~Aa~gGA-~~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf~~l~~~~~~~~fD~IIl  201 (286)
T PF10672_consen  123 KGKRVLNLFSYTGGFSVAAAAGGA-KEVVSVDSSKRALEWAKENAALNGLDLDRHRFIQGDVFKFLKRLKKGGRFDLIIL  201 (286)
T ss_dssp             TTCEEEEET-TTTHHHHHHHHTTE-SEEEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES-HHHHHHHHHHTT-EEEEEE
T ss_pred             CCCceEEecCCCCHHHHHHHHCCC-CEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHHHhcCCCCCEEEE
Confidence            378999999999999999888763 5899999999999999998764430                   01468999997


Q ss_pred             C---cc---ccCCCCHHHHHHHHHHcccCCcEEEEEEec
Q 019861          238 G---AA---IHCWSSPSTGVAEISRVLRPGGVFVGTTYI  270 (334)
Q Consensus       238 ~---~v---l~h~~d~~~~L~~i~r~LkpgG~lii~~~~  270 (334)
                      .   +.   ..-..+...++..+.++|+|||.+++..-.
T Consensus       202 DPPsF~k~~~~~~~~y~~L~~~a~~ll~~gG~l~~~scs  240 (286)
T PF10672_consen  202 DPPSFAKSKFDLERDYKKLLRRAMKLLKPGGLLLTCSCS  240 (286)
T ss_dssp             --SSEESSTCEHHHHHHHHHHHHHHTEEEEEEEEEEE--
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEcCC
Confidence            3   11   110124457888999999999998876654

The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.

>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]

Probab=97.49  E-value=0.0027  Score=53.43  Aligned_cols=109  Identities=17%  Similarity=0.192  Sum_probs=77.3

Q ss_pred             cHHHHHHHHcccCC--CCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCC--------------
Q 019861          162 PEKEFELMKGYLKP--VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES--------------  225 (334)
Q Consensus       162 ~~~~~~~l~~~l~~--~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~--------------  225 (334)
                      ..+..+.+...+.+  ..+.++||+=+|+|.++.....+|. ..++.+|.+.......++++....              
T Consensus        26 ~drVREalFNil~~~~i~g~~~LDlFAGSGaLGlEAlSRGA-~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~~  104 (187)
T COG0742          26 TDRVREALFNILAPDEIEGARVLDLFAGSGALGLEALSRGA-ARVVFVEKDRKAVKILKENLKALGLEGEARVLRNDALR  104 (187)
T ss_pred             chHHHHHHHHhccccccCCCEEEEecCCccHhHHHHHhCCC-ceEEEEecCHHHHHHHHHHHHHhCCccceEEEeecHHH
Confidence            34455566666654  5789999999999999999999984 699999999999999998865432              


Q ss_pred             ---CCCC-CCceEEEeCcccc-CCCCHHHHHHH--HHHcccCCcEEEEEEecc
Q 019861          226 ---NFPK-DSIDAVHAGAAIH-CWSSPSTGVAE--ISRVLRPGGVFVGTTYIV  271 (334)
Q Consensus       226 ---~~~~-~~fD~V~~~~vl~-h~~d~~~~L~~--i~r~LkpgG~lii~~~~~  271 (334)
                         .... +.||+|+..==.+ .+.++...+..  -...|+|+|.+++.....
T Consensus       105 ~L~~~~~~~~FDlVflDPPy~~~l~~~~~~~~~~~~~~~L~~~~~iv~E~~~~  157 (187)
T COG0742         105 ALKQLGTREPFDLVFLDPPYAKGLLDKELALLLLEENGWLKPGALIVVEHDKD  157 (187)
T ss_pred             HHHhcCCCCcccEEEeCCCCccchhhHHHHHHHHHhcCCcCCCcEEEEEeCCC
Confidence               1122 2499999853322 22233333433  456799999999977653

>PF13679 Methyltransf_32: Methyltransferase domain

Probab=97.47  E-value=0.00038  Score=56.36  Aligned_cols=46  Identities=24%  Similarity=0.312  Sum_probs=39.6

Q ss_pred             CCCCcEEEECCCcCHHHHHHHH-----cCCCCeEEEEeCCHHHHHHHHHHHh
Q 019861          176 VLGGNIIDASCGSGLFSRIFAK-----SGLFSLVVALDYSENMLKQCYEFVQ  222 (334)
Q Consensus       176 ~~~~~vLDiGcG~G~~~~~l~~-----~~~~~~v~giD~s~~~~~~a~~~~~  222 (334)
                      .+..+|+|+|||.|+++..++.     . +...|+|+|.++..++.+.++..
T Consensus        24 ~~~~~vvD~GsG~GyLs~~La~~l~~~~-~~~~v~~iD~~~~~~~~a~~~~~   74 (141)
T PF13679_consen   24 KRCITVVDLGSGKGYLSRALAHLLCNSS-PNLRVLGIDCNESLVESAQKRAQ   74 (141)
T ss_pred             CCCCEEEEeCCChhHHHHHHHHHHHhcC-CCCeEEEEECCcHHHHHHHHHHH
Confidence            5578999999999999999998     4 56799999999999888887644

>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]

Probab=97.45  E-value=0.00044  Score=65.76  Aligned_cols=90  Identities=27%  Similarity=0.401  Sum_probs=74.3

Q ss_pred             CcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCC-------------CCCCCCceEEEeCccccCCC
Q 019861          179 GNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES-------------NFPKDSIDAVHAGAAIHCWS  245 (334)
Q Consensus       179 ~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~-------------~~~~~~fD~V~~~~vl~h~~  245 (334)
                      .++|-+|||.-.+...+.+.| +..++-+|+|+..++..........             .|++++||+|+.-..++++-
T Consensus        50 ~~~l~lGCGNS~l~e~ly~~G-~~dI~~iD~S~V~V~~m~~~~~~~~~~~~~~~~d~~~l~fedESFdiVIdkGtlDal~  128 (482)
T KOG2352|consen   50 FKILQLGCGNSELSEHLYKNG-FEDITNIDSSSVVVAAMQVRNAKERPEMQMVEMDMDQLVFEDESFDIVIDKGTLDALF  128 (482)
T ss_pred             ceeEeecCCCCHHHHHHHhcC-CCCceeccccHHHHHHHHhccccCCcceEEEEecchhccCCCcceeEEEecCcccccc
Confidence            399999999999999999987 4689999999999888776553222             58899999999999888874


Q ss_pred             CH----------HHHHHHHHHcccCCcEEEEEEe
Q 019861          246 SP----------STGVAEISRVLRPGGVFVGTTY  269 (334)
Q Consensus       246 d~----------~~~L~~i~r~LkpgG~lii~~~  269 (334)
                      .+          ...+.++.++|++||+.+..+.
T Consensus       129 ~de~a~~~~~~v~~~~~eVsrvl~~~gk~~svtl  162 (482)
T KOG2352|consen  129 EDEDALLNTAHVSNMLDEVSRVLAPGGKYISVTL  162 (482)
T ss_pred             CCchhhhhhHHhhHHHhhHHHHhccCCEEEEEEe
Confidence            22          2457899999999999887776

>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=97.45  E-value=0.0019  Score=61.85  Aligned_cols=60  Identities=25%  Similarity=0.331  Sum_probs=52.2

Q ss_pred             HHHHHHHHcccCCCCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcC
Q 019861          163 EKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQE  224 (334)
Q Consensus       163 ~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~  224 (334)
                      +.+.+...+++...++.++||+=||.|.|+..+++...  +|+|+|+++.+++.|+++.+..
T Consensus       279 ekl~~~a~~~~~~~~~~~vlDlYCGvG~f~l~lA~~~~--~V~gvEi~~~aV~~A~~NA~~n  338 (432)
T COG2265         279 EKLYETALEWLELAGGERVLDLYCGVGTFGLPLAKRVK--KVHGVEISPEAVEAAQENAAAN  338 (432)
T ss_pred             HHHHHHHHHHHhhcCCCEEEEeccCCChhhhhhcccCC--EEEEEecCHHHHHHHHHHHHHc
Confidence            45667777888877788999999999999999998765  9999999999999999987654

>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase

Probab=97.43  E-value=0.0035  Score=59.09  Aligned_cols=89  Identities=18%  Similarity=0.149  Sum_probs=69.9

Q ss_pred             CCcEEEECCCcCHHHHHHHHcCC-CCeEEEEeCCHHHHHHHHHHHhcCCC---------------CCCCCceEEEeCccc
Q 019861          178 GGNIIDASCGSGLFSRIFAKSGL-FSLVVALDYSENMLKQCYEFVQQESN---------------FPKDSIDAVHAGAAI  241 (334)
Q Consensus       178 ~~~vLDiGcG~G~~~~~l~~~~~-~~~v~giD~s~~~~~~a~~~~~~~~~---------------~~~~~fD~V~~~~vl  241 (334)
                      +.+|||+.||+|..+..++...+ ...|+++|+++..++.++++++....               .....||+|...=  
T Consensus        45 ~~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~~~~~v~~~Da~~~l~~~~~~fDvIdlDP--  122 (374)
T TIGR00308        45 YINIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSVENIEVPNEDAANVLRYRNRKFHVIDIDP--  122 (374)
T ss_pred             CCEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEchhHHHHHHHhCCCCCEEEeCC--
Confidence            45899999999999999988731 25899999999999999988754320               1125799998854  


Q ss_pred             cCCCCHHHHHHHHHHcccCCcEEEEEEec
Q 019861          242 HCWSSPSTGVAEISRVLRPGGVFVGTTYI  270 (334)
Q Consensus       242 ~h~~d~~~~L~~i~r~LkpgG~lii~~~~  270 (334)
                        ...|..++..+.+.+++||.+.++--.
T Consensus       123 --fGs~~~fld~al~~~~~~glL~vTaTD  149 (374)
T TIGR00308       123 --FGTPAPFVDSAIQASAERGLLLVTATD  149 (374)
T ss_pred             --CCCcHHHHHHHHHhcccCCEEEEEecc
Confidence              245667999999999999999997443

This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.

>PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species

Probab=97.43  E-value=0.00057  Score=55.49  Aligned_cols=124  Identities=14%  Similarity=0.185  Sum_probs=75.3

Q ss_pred             CCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHH-HHHHHHhcCC--------CCCCCCceEEEeCccccCCC---
Q 019861          178 GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLK-QCYEFVQQES--------NFPKDSIDAVHAGAAIHCWS---  245 (334)
Q Consensus       178 ~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~-~a~~~~~~~~--------~~~~~~fD~V~~~~vl~h~~---  245 (334)
                      +++.+-+|+..-..-......| ..++..+|.++--++ ..++++....        .--.++||.+.+.+++||+.   
T Consensus         2 ~~~g~V~GS~~PwvEv~aL~~G-A~~iltveyn~L~i~~~~~dr~ssi~p~df~~~~~~y~~~fD~~as~~siEh~GLGR   80 (177)
T PF03269_consen    2 GKSGLVVGSMQPWVEVMALQHG-AAKILTVEYNKLEIQEEFRDRLSSILPVDFAKNWQKYAGSFDFAASFSSIEHFGLGR   80 (177)
T ss_pred             CceEEEEecCCchhhHHHHHcC-CceEEEEeecccccCcccccccccccHHHHHHHHHHhhccchhhheechhccccccc
Confidence            4678888887554433334444 357888887642211 1111111111        01146799999999999983   


Q ss_pred             --CH------HHHHHHHHHcccCCcEEEEEEeccCCCCCchHHHHHHHHHhhhhcCccCCCCHHHHHHHHHhCCCcEEEE
Q 019861          246 --SP------STGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLCRACGLVDFKC  317 (334)
Q Consensus       246 --d~------~~~L~~i~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~l~~ll~~~Gf~~v~~  317 (334)
                        ||      ...+.++.++|||||.+++..|.....   ..+            +..+.|....+..++  .||+.+..
T Consensus        81 YGDPidp~Gdl~~m~~i~~vLK~GG~L~l~vPvG~d~---i~f------------NahRiYg~~rL~mm~--~gfe~i~t  143 (177)
T PF03269_consen   81 YGDPIDPIGDLRAMAKIKCVLKPGGLLFLGVPVGTDA---IQF------------NAHRIYGPIRLAMMF--YGFEWIDT  143 (177)
T ss_pred             cCCCCCccccHHHHHHHHHhhccCCeEEEEeecCCcc---eEE------------ecceeecHhHHHHHh--CCcEEEee
Confidence              33      367899999999999999999987421   111            122344555555444  67777665


Q ss_pred             ee
Q 019861          318 TR  319 (334)
Q Consensus       318 ~~  319 (334)
                      .+
T Consensus       144 fs  145 (177)
T PF03269_consen  144 FS  145 (177)
T ss_pred             ec
Confidence            43

>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]

Probab=97.43  E-value=0.0008  Score=57.24  Aligned_cols=90  Identities=17%  Similarity=0.304  Sum_probs=73.3

Q ss_pred             CCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcC---------------CCCCCCCceEEEeCcc
Q 019861          176 VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQE---------------SNFPKDSIDAVHAGAA  240 (334)
Q Consensus       176 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~---------------~~~~~~~fD~V~~~~v  240 (334)
                      .+|++||.||-|-|.....+.++-|. +=+-++..+..++..++.--.+               ..++++.||.|.-...
T Consensus       100 tkggrvLnVGFGMgIidT~iQe~~p~-~H~IiE~hp~V~krmr~~gw~ek~nViil~g~WeDvl~~L~d~~FDGI~yDTy  178 (271)
T KOG1709|consen  100 TKGGRVLNVGFGMGIIDTFIQEAPPD-EHWIIEAHPDVLKRMRDWGWREKENVIILEGRWEDVLNTLPDKHFDGIYYDTY  178 (271)
T ss_pred             hCCceEEEeccchHHHHHHHhhcCCc-ceEEEecCHHHHHHHHhcccccccceEEEecchHhhhccccccCcceeEeech
Confidence            46899999999999888888888764 4557899999998888642111               2478899999998877


Q ss_pred             ccCCCCHHHHHHHHHHcccCCcEEEE
Q 019861          241 IHCWSSPSTGVAEISRVLRPGGVFVG  266 (334)
Q Consensus       241 l~h~~d~~~~L~~i~r~LkpgG~lii  266 (334)
                      -+|..|...+-+.+.++|||+|++-.
T Consensus       179 ~e~yEdl~~~hqh~~rLLkP~gv~Sy  204 (271)
T KOG1709|consen  179 SELYEDLRHFHQHVVRLLKPEGVFSY  204 (271)
T ss_pred             hhHHHHHHHHHHHHhhhcCCCceEEE
Confidence            78888888899999999999998765

>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]

Probab=97.41  E-value=0.002  Score=60.42  Aligned_cols=106  Identities=25%  Similarity=0.291  Sum_probs=78.0

Q ss_pred             HHHHcccCCCCCCcEEEECCCcCHHHHHHHHcCCC--CeEEEEeCCHHHHHHHHHHHhcCCC----------------CC
Q 019861          167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLF--SLVVALDYSENMLKQCYEFVQQESN----------------FP  228 (334)
Q Consensus       167 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~--~~v~giD~s~~~~~~a~~~~~~~~~----------------~~  228 (334)
                      ......+.+.++.+|||+.++.|.=+.++++...+  ..|+++|.++.-++..++++...+-                .+
T Consensus       146 ~l~a~~L~p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~nv~~~~~d~~~~~~~~~  225 (355)
T COG0144         146 QLPALVLDPKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVRNVIVVNKDARRLAELLP  225 (355)
T ss_pred             HHHHHHcCCCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCCceEEEeccccccccccc
Confidence            34556678889999999999999888788777542  3579999999999888887664331                11


Q ss_pred             C-CCceEEEeC------ccccCCCC----------------HHHHHHHHHHcccCCcEEEEEEeccC
Q 019861          229 K-DSIDAVHAG------AAIHCWSS----------------PSTGVAEISRVLRPGGVFVGTTYIVD  272 (334)
Q Consensus       229 ~-~~fD~V~~~------~vl~h~~d----------------~~~~L~~i~r~LkpgG~lii~~~~~~  272 (334)
                      . +.||.|+..      .++.--++                ...+|....+.|||||.|+-++=...
T Consensus       226 ~~~~fD~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTCS~~  292 (355)
T COG0144         226 GGEKFDRILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYSTCSLT  292 (355)
T ss_pred             ccCcCcEEEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEccCCc
Confidence            2 259999973      34432222                13689999999999999999887653

>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]

Probab=97.39  E-value=0.0026  Score=58.31  Aligned_cols=127  Identities=17%  Similarity=0.177  Sum_probs=87.9

Q ss_pred             CCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHH--Hhc--CCCCC------------------CCCceEE
Q 019861          178 GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEF--VQQ--ESNFP------------------KDSIDAV  235 (334)
Q Consensus       178 ~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~--~~~--~~~~~------------------~~~fD~V  235 (334)
                      ..++|-+|.|.|..++.+.+.-...+++-+|++|.|++.++..  +..  .+.+.                  .+.||+|
T Consensus       290 a~~vLvlGGGDGLAlRellkyP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a~~~fD~v  369 (508)
T COG4262         290 ARSVLVLGGGDGLALRELLKYPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTAADMFDVV  369 (508)
T ss_pred             cceEEEEcCCchHHHHHHHhCCCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhhcccccEE
Confidence            4689999999999999998874356999999999999999843  221  11111                  3478888


Q ss_pred             EeCccccCCCCH----------HHHHHHHHHcccCCcEEEEEEeccCCCCCchHHHHHHHHHhhhhcCccCCCCHHHHHH
Q 019861          236 HAGAAIHCWSSP----------STGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIED  305 (334)
Q Consensus       236 ~~~~vl~h~~d~----------~~~L~~i~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~l~~  305 (334)
                      +..     ++||          ..+-.-+++.|+++|.+++..-..-..                   ...++   .+.+
T Consensus       370 IVD-----l~DP~tps~~rlYS~eFY~ll~~~l~e~Gl~VvQags~y~t-------------------p~vfw---~i~a  422 (508)
T COG4262         370 IVD-----LPDPSTPSIGRLYSVEFYRLLSRHLAETGLMVVQAGSPYFT-------------------PRVFW---RIDA  422 (508)
T ss_pred             EEe-----CCCCCCcchhhhhhHHHHHHHHHhcCcCceEEEecCCCccC-------------------Cceee---eehh
Confidence            865     3555          356788899999999999865442110                   00111   3556


Q ss_pred             HHHhCCCcEEE----EeecCcEEEEEEEcC
Q 019861          306 LCRACGLVDFK----CTRNRGFVMFTATKP  331 (334)
Q Consensus       306 ll~~~Gf~~v~----~~~~g~~~~~~a~K~  331 (334)
                      -++++||.+.-    +-+.|-|-+..+.+.
T Consensus       423 Tik~AG~~~~Pyhv~VPTFGeWGf~l~~~~  452 (508)
T COG4262         423 TIKSAGYRVWPYHVHVPTFGEWGFILAAPG  452 (508)
T ss_pred             HHHhCcceeeeeEEecCcccccceeecccc
Confidence            78889997755    335677777777664

>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]

Probab=97.38  E-value=0.00071  Score=56.27  Aligned_cols=95  Identities=16%  Similarity=0.230  Sum_probs=62.9

Q ss_pred             CCCCCcEEEECCCcCHHHHHHHHc-CCCCeEEEEeCCHHHH-HHH--------------HHHHhcCCCCCCCCceEEEeC
Q 019861          175 PVLGGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENML-KQC--------------YEFVQQESNFPKDSIDAVHAG  238 (334)
Q Consensus       175 ~~~~~~vLDiGcG~G~~~~~l~~~-~~~~~v~giD~s~~~~-~~a--------------~~~~~~~~~~~~~~fD~V~~~  238 (334)
                      ..|+.+|||+||..|.|+....+. +|.+.+.|+|+-.-.. +.+              ++.++   .+|+...|+|++.
T Consensus        67 l~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh~~p~~Ga~~i~~~dvtdp~~~~ki~e---~lp~r~VdvVlSD  143 (232)
T KOG4589|consen   67 LRPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLHIEPPEGATIIQGNDVTDPETYRKIFE---ALPNRPVDVVLSD  143 (232)
T ss_pred             cCCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeeeccCCCCcccccccccCCHHHHHHHHH---hCCCCcccEEEec
Confidence            346899999999999999999887 5888999999743111 000              11111   2467889999986


Q ss_pred             ccc--------cCCCCH---HHHHHHHHHcccCCcEEEEEEeccC
Q 019861          239 AAI--------HCWSSP---STGVAEISRVLRPGGVFVGTTYIVD  272 (334)
Q Consensus       239 ~vl--------~h~~d~---~~~L~~i~r~LkpgG~lii~~~~~~  272 (334)
                      ..-        .|..-.   ..+|.-....++|+|.++.-.+..+
T Consensus       144 MapnaTGvr~~Dh~~~i~LC~s~l~~al~~~~p~g~fvcK~w~g~  188 (232)
T KOG4589|consen  144 MAPNATGVRIRDHYRSIELCDSALLFALTLLIPNGSFVCKLWDGS  188 (232)
T ss_pred             cCCCCcCcchhhHHHHHHHHHHHHHHhhhhcCCCcEEEEEEecCC
Confidence            542        221111   1344445567789999999888764

>COG2835 Uncharacterized conserved protein [Function unknown]

Probab=97.37  E-value=0.0001  Score=49.17  Aligned_cols=45  Identities=27%  Similarity=0.511  Sum_probs=37.8

Q ss_pred             CCceeCCCCCCCccccCCCCcccccccCCcccccccccccccccCcccccccCC
Q 019861           69 KNVLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSGVGTHFDMTAASG  122 (334)
Q Consensus        69 ~~~l~CPiC~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~~~~~~~~~~~~~~~  122 (334)
                      ++.++||.|.++|....         ..+.+.|+.|+..|+.++|++.++.+..
T Consensus         6 LeiLaCP~~kg~L~~~~---------~~~~L~c~~~~~aYpI~dGIPvlL~~ea   50 (60)
T COG2835           6 LEILACPVCKGPLVYDE---------EKQELICPRCKLAYPIRDGIPVLLPDEA   50 (60)
T ss_pred             heeeeccCcCCcceEec---------cCCEEEecccCceeecccCccccCchhh
Confidence            46899999999987655         2358999999999999999999987643

>PRK11827 hypothetical protein; Provisional

Probab=97.36  E-value=9.3e-05  Score=49.86  Aligned_cols=45  Identities=16%  Similarity=0.290  Sum_probs=36.5

Q ss_pred             CCceeCCCCCCCccccCCCCcccccccCCcccccccccccccccCcccccccCC
Q 019861           69 KNVLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSGVGTHFDMTAASG  122 (334)
Q Consensus        69 ~~~l~CPiC~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~~~~~~~~~~~~~~~  122 (334)
                      ++.++||.|++++....         ..+.+.|..|+..|+.++|++.++.+..
T Consensus         6 LeILaCP~ckg~L~~~~---------~~~~Lic~~~~laYPI~dgIPVlL~deA   50 (60)
T PRK11827          6 LEIIACPVCNGKLWYNQ---------EKQELICKLDNLAFPLRDGIPVLLETEA   50 (60)
T ss_pred             HhheECCCCCCcCeEcC---------CCCeEECCccCeeccccCCccccCHHHh
Confidence            45799999999987643         2256899999999999999999887643

>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases

Probab=97.35  E-value=0.0013  Score=62.89  Aligned_cols=112  Identities=19%  Similarity=0.243  Sum_probs=74.6

Q ss_pred             CCCCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCH----HHHHHHHHH--HhcC----CCCC--CCCceEEEeCccc
Q 019861          174 KPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSE----NMLKQCYEF--VQQE----SNFP--KDSIDAVHAGAAI  241 (334)
Q Consensus       174 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~----~~~~~a~~~--~~~~----~~~~--~~~fD~V~~~~vl  241 (334)
                      ....-..|+|+..|.|.|+.+|.+..    |..+...+    +.+....++  +.-.    .+|+  ..+||+|++.+++
T Consensus       362 ~~~~iRNVMDMnAg~GGFAAAL~~~~----VWVMNVVP~~~~ntL~vIydRGLIG~yhDWCE~fsTYPRTYDLlHA~~lf  437 (506)
T PF03141_consen  362 KWGRIRNVMDMNAGYGGFAAALIDDP----VWVMNVVPVSGPNTLPVIYDRGLIGVYHDWCEAFSTYPRTYDLLHADGLF  437 (506)
T ss_pred             cccceeeeeeecccccHHHHHhccCC----ceEEEecccCCCCcchhhhhcccchhccchhhccCCCCcchhheehhhhh
Confidence            33334589999999999999998753    33333222    222222221  1100    1233  5899999999998


Q ss_pred             cCCC---CHHHHHHHHHHcccCCcEEEEEEeccCCCCCchHHHHHHHHHhhhhcCccCCCCHHHHHHHHHhCCCcEEE
Q 019861          242 HCWS---SPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLCRACGLVDFK  316 (334)
Q Consensus       242 ~h~~---d~~~~L~~i~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~l~~ll~~~Gf~~v~  316 (334)
                      .+..   +...+|-|+.|+|+|||.++|.+-..                           ..++++.++++..++...
T Consensus       438 s~~~~rC~~~~illEmDRILRP~G~~iiRD~~~---------------------------vl~~v~~i~~~lrW~~~~  488 (506)
T PF03141_consen  438 SLYKDRCEMEDILLEMDRILRPGGWVIIRDTVD---------------------------VLEKVKKIAKSLRWEVRI  488 (506)
T ss_pred             hhhcccccHHHHHHHhHhhcCCCceEEEeccHH---------------------------HHHHHHHHHHhCcceEEE
Confidence            8776   45789999999999999999955431                           245677777777776544

; GO: 0008168 methyltransferase activity

>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase

Probab=97.35  E-value=0.0006  Score=63.91  Aligned_cols=58  Identities=19%  Similarity=0.257  Sum_probs=45.6

Q ss_pred             HHHHHHHcccCCCCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcC
Q 019861          164 KEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQE  224 (334)
Q Consensus       164 ~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~  224 (334)
                      .+.+.+.+++... +.+|||++||+|.++..+++...  +|+|+|+++.+++.++++....
T Consensus       185 ~l~~~v~~~~~~~-~~~vlDl~~G~G~~sl~la~~~~--~v~~vE~~~~av~~a~~n~~~~  242 (353)
T TIGR02143       185 KMLEWACEVTQGS-KGDLLELYCGNGNFSLALAQNFR--RVLATEIAKPSVNAAQYNIAAN  242 (353)
T ss_pred             HHHHHHHHHhhcC-CCcEEEEeccccHHHHHHHHhCC--EEEEEECCHHHHHHHHHHHHHc
Confidence            3344555555432 24799999999999999988764  9999999999999999987643

This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.

>TIGR01444 fkbM_fam methyltransferase, FkbM family

Probab=97.34  E-value=0.00053  Score=55.33  Aligned_cols=45  Identities=24%  Similarity=0.224  Sum_probs=40.3

Q ss_pred             cEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcC
Q 019861          180 NIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQE  224 (334)
Q Consensus       180 ~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~  224 (334)
                      ++||||||.|.++..++..++..+++++|+++.+.+.+++++...
T Consensus         1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~~~~n   45 (143)
T TIGR01444         1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEENVKLN   45 (143)
T ss_pred             CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHHHHHHc
Confidence            489999999999999999987678999999999999999887643

Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.

>COG3897 Predicted methyltransferase [General function prediction only]

Probab=97.32  E-value=0.00082  Score=56.40  Aligned_cols=104  Identities=17%  Similarity=0.132  Sum_probs=73.0

Q ss_pred             HHHHcccCCCCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCC----------CCCCCCceEEE
Q 019861          167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES----------NFPKDSIDAVH  236 (334)
Q Consensus       167 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~----------~~~~~~fD~V~  236 (334)
                      +.+...-....+++|||+|+|+|.-+...+..|. ..|+..|+.+......+-+.+...          ..++..||+|+
T Consensus        69 R~i~~~PetVrgkrVLd~gagsgLvaIAaa~aGA-~~v~a~d~~P~~~~ai~lNa~angv~i~~~~~d~~g~~~~~Dl~L  147 (218)
T COG3897          69 RYIDDHPETVRGKRVLDLGAGSGLVAIAAARAGA-AEVVAADIDPWLEQAIRLNAAANGVSILFTHADLIGSPPAFDLLL  147 (218)
T ss_pred             HHHhcCccccccceeeecccccChHHHHHHHhhh-HHHHhcCCChHHHHHhhcchhhccceeEEeeccccCCCcceeEEE
Confidence            3444444455689999999999999999988884 588899999877766665544332          23677899999


Q ss_pred             eCccccCCCCHHHHHHHHHHccc-CCcEEEEEEeccC
Q 019861          237 AGAAIHCWSSPSTGVAEISRVLR-PGGVFVGTTYIVD  272 (334)
Q Consensus       237 ~~~vl~h~~d~~~~L~~i~r~Lk-pgG~lii~~~~~~  272 (334)
                      ...++..-+.-..++. ..+.|+ .|-.+++-+|.+.
T Consensus       148 agDlfy~~~~a~~l~~-~~~~l~~~g~~vlvgdp~R~  183 (218)
T COG3897         148 AGDLFYNHTEADRLIP-WKDRLAEAGAAVLVGDPGRA  183 (218)
T ss_pred             eeceecCchHHHHHHH-HHHHHHhCCCEEEEeCCCCC
Confidence            9998775444456666 555555 4555666666553

>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A

Probab=97.26  E-value=0.0019  Score=56.59  Aligned_cols=149  Identities=15%  Similarity=0.171  Sum_probs=87.8

Q ss_pred             CCCCcHHHHHHHHcccCCCCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCC------------
Q 019861          158 GFPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES------------  225 (334)
Q Consensus       158 ~~~~~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~------------  225 (334)
                      ..+..+...+.+...++.  ..+|+|||||---++..+....+...|+|+|++..+++.....+....            
T Consensus        88 Rl~~Ld~fY~~if~~~~~--p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l~~l~~~~~~~v~Dl~~  165 (251)
T PF07091_consen   88 RLPNLDEFYDEIFGRIPP--PDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFLAVLGVPHDARVRDLLS  165 (251)
T ss_dssp             CGGGHHHHHHHHCCCS-----SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHHHHTT-CEEEEEE-TTT
T ss_pred             hhhhHHHHHHHHHhcCCC--CchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHHHhhCCCcceeEeeeec
Confidence            344455666666665544  789999999999998888877767799999999999999887655432            


Q ss_pred             CCCCCCceEEEeCccccCCCCHH-HHHHHHHHcccCCcEEEEEEeccCCCCCchHHHHHHHHHhhhhcCccCCCCHHHHH
Q 019861          226 NFPKDSIDAVHAGAAIHCWSSPS-TGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIE  304 (334)
Q Consensus       226 ~~~~~~fD~V~~~~vl~h~~d~~-~~L~~i~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~l~  304 (334)
                      ..+....|+.++.=+++.+.... ...-++.+.++ .-.++++.|...-. .       ....+..       .-...++
T Consensus       166 ~~~~~~~DlaLllK~lp~le~q~~g~g~~ll~~~~-~~~~vVSfPtrSL~-g-------R~~gm~~-------~y~~~fe  229 (251)
T PF07091_consen  166 DPPKEPADLALLLKTLPCLERQRRGAGLELLDALR-SPHVVVSFPTRSLG-G-------RNKGMEQ-------TYSAWFE  229 (251)
T ss_dssp             SHTTSEESEEEEET-HHHHHHHSTTHHHHHHHHSC-ESEEEEEEES---------------TTHHH-------CHHHHHH
T ss_pred             cCCCCCcchhhHHHHHHHHHHHhcchHHHHHHHhC-CCeEEEeccccccc-c-------Ccccccc-------CHHHHHH
Confidence            23467799999998887765332 12122333332 23566677765311 1       0011111       1134677


Q ss_pred             HHHHhCCCcEEEEeecCcEEE
Q 019861          305 DLCRACGLVDFKCTRNRGFVM  325 (334)
Q Consensus       305 ~ll~~~Gf~~v~~~~~g~~~~  325 (334)
                      .++..-|+. ++....+.=.+
T Consensus       230 ~~~~~~~~~-~~~~~~~~Elv  249 (251)
T PF07091_consen  230 ALAAERGWI-VDRLTFGNELV  249 (251)
T ss_dssp             HHCCTTCEE-EEEEEETTEEE
T ss_pred             HhcccCCce-eeeeeccccee
Confidence            788888887 45444443343

>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated

Probab=97.24  E-value=0.0009  Score=62.98  Aligned_cols=58  Identities=21%  Similarity=0.272  Sum_probs=45.9

Q ss_pred             HHHHHHHcccCCCCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcC
Q 019861          164 KEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQE  224 (334)
Q Consensus       164 ~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~  224 (334)
                      .+.+.+..++... +.++||++||+|.++..+++...  +|+|+|.++.+++.++++....
T Consensus       194 ~l~~~v~~~~~~~-~~~vLDl~~G~G~~sl~la~~~~--~v~~vE~~~~ai~~a~~N~~~~  251 (362)
T PRK05031        194 KMLEWALDATKGS-KGDLLELYCGNGNFTLALARNFR--RVLATEISKPSVAAAQYNIAAN  251 (362)
T ss_pred             HHHHHHHHHhhcC-CCeEEEEeccccHHHHHHHhhCC--EEEEEECCHHHHHHHHHHHHHh
Confidence            4455555555432 35799999999999998888765  9999999999999999887543

>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional

Probab=97.21  E-value=0.0025  Score=58.52  Aligned_cols=79  Identities=15%  Similarity=0.276  Sum_probs=57.1

Q ss_pred             CCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHH-----HhcC--CCCC-CCCceEEEeCccccCCCCH
Q 019861          176 VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEF-----VQQE--SNFP-KDSIDAVHAGAAIHCWSSP  247 (334)
Q Consensus       176 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~-----~~~~--~~~~-~~~fD~V~~~~vl~h~~d~  247 (334)
                      .++.++||+||++|.|+..+.+.|.  .|++||..+-. ......     ....  ...+ .+.+|.|+|..+    ..|
T Consensus       210 ~~g~~vlDLGAsPGGWT~~L~~rG~--~V~AVD~g~l~-~~L~~~~~V~h~~~d~fr~~p~~~~vDwvVcDmv----e~P  282 (357)
T PRK11760        210 APGMRAVDLGAAPGGWTYQLVRRGM--FVTAVDNGPMA-QSLMDTGQVEHLRADGFKFRPPRKNVDWLVCDMV----EKP  282 (357)
T ss_pred             CCCCEEEEeCCCCcHHHHHHHHcCC--EEEEEechhcC-HhhhCCCCEEEEeccCcccCCCCCCCCEEEEecc----cCH
Confidence            4688999999999999999999986  99999965422 111110     0000  0122 567999999876    568


Q ss_pred             HHHHHHHHHcccCC
Q 019861          248 STGVAEISRVLRPG  261 (334)
Q Consensus       248 ~~~L~~i~r~Lkpg  261 (334)
                      ..+++-+.+.|..|
T Consensus       283 ~rva~lm~~Wl~~g  296 (357)
T PRK11760        283 ARVAELMAQWLVNG  296 (357)
T ss_pred             HHHHHHHHHHHhcC
Confidence            88888899999776

>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2

Probab=97.19  E-value=0.0053  Score=55.12  Aligned_cols=93  Identities=14%  Similarity=0.156  Sum_probs=54.0

Q ss_pred             CCcEEEECCCcCHHHH-HHHHc-CCCCeEEEEeCCHHHHHHHHHHHhcCC----------------CCCCCCceEEEeCc
Q 019861          178 GGNIIDASCGSGLFSR-IFAKS-GLFSLVVALDYSENMLKQCYEFVQQES----------------NFPKDSIDAVHAGA  239 (334)
Q Consensus       178 ~~~vLDiGcG~G~~~~-~l~~~-~~~~~v~giD~s~~~~~~a~~~~~~~~----------------~~~~~~fD~V~~~~  239 (334)
                      +.+|+=||+|.=-++. .+++. +....++++|+++.+.+.+++......                ...-..||+|+...
T Consensus       121 p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~dl~~~DvV~lAa  200 (276)
T PF03059_consen  121 PSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVTYDLKEYDVVFLAA  200 (276)
T ss_dssp             --EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-GG----SEEEE-T
T ss_pred             cceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhccccccccCCEEEEhh
Confidence            4599999999865544 44433 445689999999999999987665211                11235799998876


Q ss_pred             cccCCC-CHHHHHHHHHHcccCCcEEEEEEec
Q 019861          240 AIHCWS-SPSTGVAEISRVLRPGGVFVGTTYI  270 (334)
Q Consensus       240 vl~h~~-d~~~~L~~i~r~LkpgG~lii~~~~  270 (334)
                      ...--. +-..+|..+.+.++||..++.-...
T Consensus       201 lVg~~~e~K~~Il~~l~~~m~~ga~l~~Rsa~  232 (276)
T PF03059_consen  201 LVGMDAEPKEEILEHLAKHMAPGARLVVRSAH  232 (276)
T ss_dssp             T-S----SHHHHHHHHHHHS-TTSEEEEEE--
T ss_pred             hcccccchHHHHHHHHHhhCCCCcEEEEecch
Confidence            554222 5578999999999999999886443

5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.

>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=97.15  E-value=0.0039  Score=54.12  Aligned_cols=130  Identities=16%  Similarity=0.146  Sum_probs=83.4

Q ss_pred             CCCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhc-----CC--------CCCCCCceEEEeCccc
Q 019861          175 PVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQ-----ES--------NFPKDSIDAVHAGAAI  241 (334)
Q Consensus       175 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~-----~~--------~~~~~~fD~V~~~~vl  241 (334)
                      ..++..+||||+.||.|+..+.+.|. .+|+++|..-..+..--+.-..     ..        .+ .+..|++++.-++
T Consensus        77 ~~k~kv~LDiGsSTGGFTd~lLq~gA-k~VyavDVG~~Ql~~kLR~d~rV~~~E~tN~r~l~~~~~-~~~~d~~v~DvSF  154 (245)
T COG1189          77 DVKGKVVLDIGSSTGGFTDVLLQRGA-KHVYAVDVGYGQLHWKLRNDPRVIVLERTNVRYLTPEDF-TEKPDLIVIDVSF  154 (245)
T ss_pred             CCCCCEEEEecCCCccHHHHHHHcCC-cEEEEEEccCCccCHhHhcCCcEEEEecCChhhCCHHHc-ccCCCeEEEEeeh
Confidence            34678999999999999999999984 6999999987666543322110     00        12 2367899987665


Q ss_pred             cCCCCHHHHHHHHHHcccCCcEEEEEEeccCCCCCchHHHHHHHHHhhh----hcCccCCCCHHHHHHHHHhCCCcEEEE
Q 019861          242 HCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQ----ISGSYTFLSEREIEDLCRACGLVDFKC  317 (334)
Q Consensus       242 ~h~~d~~~~L~~i~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~t~~~l~~ll~~~Gf~~v~~  317 (334)
                      .   ....+|-.+..+|+++|.++...--         -+.........    .....+.--...+.+++++.||++...
T Consensus       155 I---SL~~iLp~l~~l~~~~~~~v~LvKP---------QFEagr~~v~kkGvv~d~~~~~~v~~~i~~~~~~~g~~~~gl  222 (245)
T COG1189         155 I---SLKLILPALLLLLKDGGDLVLLVKP---------QFEAGREQVGKKGVVRDPKLHAEVLSKIENFAKELGFQVKGL  222 (245)
T ss_pred             h---hHHHHHHHHHHhcCCCceEEEEecc---------hhhhhhhhcCcCceecCcchHHHHHHHHHHHHhhcCcEEeee
Confidence            5   3456788999999999876663321         11111111110    000112224568889999999988774


Q ss_pred             e
Q 019861          318 T  318 (334)
Q Consensus       318 ~  318 (334)
                      .
T Consensus       223 ~  223 (245)
T COG1189         223 I  223 (245)
T ss_pred             E
Confidence            3

>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=97.13  E-value=0.044  Score=46.49  Aligned_cols=136  Identities=11%  Similarity=0.105  Sum_probs=88.2

Q ss_pred             cCCCCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCC---------CCC------CCCceEEEe
Q 019861          173 LKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES---------NFP------KDSIDAVHA  237 (334)
Q Consensus       173 l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~---------~~~------~~~fD~V~~  237 (334)
                      ++..++.+||=+|..+|....++++--..+.++++++++......-.......         ..|      -+..|+|..
T Consensus        72 ~pi~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl~~a~~R~Ni~PIL~DA~~P~~Y~~~Ve~VDviy~  151 (231)
T COG1889          72 FPIKEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELLDVAEKRPNIIPILEDARKPEKYRHLVEKVDVIYQ  151 (231)
T ss_pred             CCcCCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHHHHHHhCCCceeeecccCCcHHhhhhcccccEEEE
Confidence            45667899999999999999999987556789999999977665544333221         122      135788775


Q ss_pred             CccccCCCCHH---HHHHHHHHcccCCcEEEEEEeccCCCCCchHHHHHHHHHhhhhcCccCCCCHHHHHHHHHhCCCcE
Q 019861          238 GAAIHCWSSPS---TGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLCRACGLVD  314 (334)
Q Consensus       238 ~~vl~h~~d~~---~~L~~i~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~l~~ll~~~Gf~~  314 (334)
                      .     +..|.   -+..++...||+||.++++.-.........+- .                --++-.+.|++.||++
T Consensus       152 D-----VAQp~Qa~I~~~Na~~FLk~~G~~~i~iKArSIdvT~dp~-~----------------vf~~ev~kL~~~~f~i  209 (231)
T COG1889         152 D-----VAQPNQAEILADNAEFFLKKGGYVVIAIKARSIDVTADPE-E----------------VFKDEVEKLEEGGFEI  209 (231)
T ss_pred             e-----cCCchHHHHHHHHHHHhcccCCeEEEEEEeecccccCCHH-H----------------HHHHHHHHHHhcCcee
Confidence            4     33443   45677899999999777766544321111111 0                0112335678899999


Q ss_pred             EEEeecC----cEEEEEEEc
Q 019861          315 FKCTRNR----GFVMFTATK  330 (334)
Q Consensus       315 v~~~~~g----~~~~~~a~K  330 (334)
                      .+.....    -+.++++++
T Consensus       210 ~e~~~LePye~DH~~i~~~~  229 (231)
T COG1889         210 LEVVDLEPYEKDHALIVAKY  229 (231)
T ss_pred             eEEeccCCcccceEEEEEee
Confidence            9877653    356666654

>PLN02668 indole-3-acetate carboxyl methyltransferase

Probab=97.13  E-value=0.0088  Score=56.26  Aligned_cols=87  Identities=17%  Similarity=0.187  Sum_probs=55.6

Q ss_pred             CCCCCCceEEEeCccccCCCC-H-------------------------------------HHHHHHHHHcccCCcEEEEE
Q 019861          226 NFPKDSIDAVHAGAAIHCWSS-P-------------------------------------STGVAEISRVLRPGGVFVGT  267 (334)
Q Consensus       226 ~~~~~~fD~V~~~~vl~h~~d-~-------------------------------------~~~L~~i~r~LkpgG~lii~  267 (334)
                      -||.++.+++++...||++.. |                                     ..+|+.=.+-|.|||++++.
T Consensus       157 LfP~~Slh~~~Ss~slHWLS~vP~~l~d~~s~~~Nkg~iyi~~~s~~v~~aY~~Qf~~D~~~FL~~Ra~ELvpGG~mvl~  236 (386)
T PLN02668        157 LFPARSIDVFHSAFSLHWLSQVPESVTDKRSAAYNKGRVFIHGASESTANAYKRQFQADLAGFLRARAQEMKRGGAMFLV  236 (386)
T ss_pred             ccCCCceEEEEeeccceecccCchhhccCCcccccCCceEecCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCcEEEEE
Confidence            378999999999999998862 1                                     13455556678999999999


Q ss_pred             EeccCCCCCc------hHH---HHHHHHHh-----------hhhcCccCCCCHHHHHHHHHhCCC
Q 019861          268 TYIVDGPFNL------IPF---SRLLRQNM-----------MQISGSYTFLSEREIEDLCRACGL  312 (334)
Q Consensus       268 ~~~~~~~~~~------~~~---~~~~~~~~-----------~~~~~~~~~~t~~~l~~ll~~~Gf  312 (334)
                      ...+.+....      ..|   +...+..+           ..+.-...+.+.+++++++++.|.
T Consensus       237 ~~Gr~~~~~~~~~~~~~~~~~~l~~al~dlv~eGlI~eek~dsFniP~Y~ps~eEv~~~Ie~~gs  301 (386)
T PLN02668        237 CLGRTSVDPTDQGGAGLLFGTHFQDAWDDLVQEGLVTSEKRDSFNIPVYAPSLQDFKEVVEANGS  301 (386)
T ss_pred             EecCCCCCcccCCchhHHHHHHHHHHHHHHHHcCCCCHHHHhcccCcccCCCHHHHHHHHhhcCC
Confidence            8887532111      111   11111111           011123356789999999999884

>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine

Probab=97.06  E-value=0.012  Score=54.61  Aligned_cols=138  Identities=22%  Similarity=0.190  Sum_probs=73.4

Q ss_pred             CCCcEEEECCCcCHHHHHHHHc------------C----CCCeEEEEeCCHHHHHHHHHH-------HhcC---------
Q 019861          177 LGGNIIDASCGSGLFSRIFAKS------------G----LFSLVVALDYSENMLKQCYEF-------VQQE---------  224 (334)
Q Consensus       177 ~~~~vLDiGcG~G~~~~~l~~~------------~----~~~~v~giD~s~~~~~~a~~~-------~~~~---------  224 (334)
                      ..-+|+|+||..|..+..+...            +    +..+|+--|+-.+--...-+.       ....         
T Consensus        16 ~~~~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~e~~v~~nDlP~NDFn~lF~~l~~~~~~~~~~~~~f~~gvp   95 (334)
T PF03492_consen   16 KPFRIADLGCSSGPNSLLAVSNIIDAIRERCRSSNNQPPPEFQVFFNDLPSNDFNTLFKSLPSFQQSLKKFRNYFVSGVP   95 (334)
T ss_dssp             TEEEEEEES--SSHHHHHHHHHHHHHHHHHHHCTT-SS--EEEEEEEE-TTS-HHHHHHCHHHHHHHHHHTTSEEEEEEE
T ss_pred             CceEEEecCCCCCccHHHHHHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCccHHHHHHhChhhhhccCCCceEEEEecC
Confidence            3569999999999887666432            1    224677778654322221111       1111         


Q ss_pred             -----CCCCCCCceEEEeCccccCCCC-H--------------------------------------HHHHHHHHHcccC
Q 019861          225 -----SNFPKDSIDAVHAGAAIHCWSS-P--------------------------------------STGVAEISRVLRP  260 (334)
Q Consensus       225 -----~~~~~~~fD~V~~~~vl~h~~d-~--------------------------------------~~~L~~i~r~Lkp  260 (334)
                           .-+|+++.|+++++..||++.. |                                      ..+|+.=++-|+|
T Consensus        96 gSFy~rLfP~~Svh~~~Ss~alHWLS~vP~~l~~~~~~~~Nkg~i~~~~~~~~~v~~ay~~Qf~~D~~~FL~~Ra~ELv~  175 (334)
T PF03492_consen   96 GSFYGRLFPSNSVHFGHSSYALHWLSQVPEELVDKSSPAWNKGNIYISRTSPPEVAKAYAKQFQKDFSSFLKARAEELVP  175 (334)
T ss_dssp             S-TTS--S-TT-EEEEEEES-TTB-SSS-CCCCTTTSTTTSTTTSSSSTTS-HHHHHHHHHHHHHHHHHHHHHHHHHEEE
T ss_pred             chhhhccCCCCceEEEEEechhhhcccCCcccccccccccccCcEEEecCCCHHHHHHHHHHHHHHHHHHHHHhhheecc
Confidence                 1388999999999999998752 0                                      1345555667889


Q ss_pred             CcEEEEEEeccCCCCC-------chHHHHHHHHHhhh-----------hcCccCCCCHHHHHHHHHhCC-CcE
Q 019861          261 GGVFVGTTYIVDGPFN-------LIPFSRLLRQNMMQ-----------ISGSYTFLSEREIEDLCRACG-LVD  314 (334)
Q Consensus       261 gG~lii~~~~~~~~~~-------~~~~~~~~~~~~~~-----------~~~~~~~~t~~~l~~ll~~~G-f~~  314 (334)
                      ||++++..+..+....       ....+...+..+..           +.-...+.+.+++++.+++.| |++
T Consensus       176 GG~mvl~~~gr~~~~~~~~~~~~~~~~l~~~l~dMv~eGlI~~ek~dsfniP~Y~ps~eEv~~~I~~~gsF~I  248 (334)
T PF03492_consen  176 GGRMVLTFLGRDEEDPSSTGSCMLWDLLADALRDMVAEGLISEEKVDSFNIPIYFPSPEEVRAIIEEEGSFEI  248 (334)
T ss_dssp             EEEEEEEEEE-STSSTTSTTCCCHHHHHHHHHHHHHHTTSS-HCCCCTG--SBB---HHHHHHHHHHHTSEEE
T ss_pred             CcEEEEEEeeccccccccCCcchHHHHHHHHHHHHHHcCCcCHHHhhceeCCccCCCHHHHHHHHhcCCCEEE
Confidence            9999999998876211       11222222222211           111235678999999999987 443

Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.

>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e

Probab=97.04  E-value=0.0022  Score=57.63  Aligned_cols=58  Identities=19%  Similarity=0.271  Sum_probs=50.0

Q ss_pred             HHHHHHHHcccCCCCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHh
Q 019861          163 EKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQ  222 (334)
Q Consensus       163 ~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~  222 (334)
                      ....+.+.+.+...++..|||||+|.|.++..+.+.+.  +++++|+++.+.+..++.+.
T Consensus        16 ~~~~~~Iv~~~~~~~~~~VlEiGpG~G~lT~~L~~~~~--~v~~vE~d~~~~~~L~~~~~   73 (262)
T PF00398_consen   16 PNIADKIVDALDLSEGDTVLEIGPGPGALTRELLKRGK--RVIAVEIDPDLAKHLKERFA   73 (262)
T ss_dssp             HHHHHHHHHHHTCGTTSEEEEESSTTSCCHHHHHHHSS--EEEEEESSHHHHHHHHHHCT
T ss_pred             HHHHHHHHHhcCCCCCCEEEEeCCCCccchhhHhcccC--cceeecCcHhHHHHHHHHhh
Confidence            34456677777776789999999999999999999985  99999999999999998765

g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....

>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional

Probab=97.03  E-value=0.0056  Score=62.66  Aligned_cols=110  Identities=14%  Similarity=0.033  Sum_probs=68.8

Q ss_pred             cHHHHHHHHcccCC-CCCCcEEEECCCcCHHHHHHHHcC-----------------------------------------
Q 019861          162 PEKEFELMKGYLKP-VLGGNIIDASCGSGLFSRIFAKSG-----------------------------------------  199 (334)
Q Consensus       162 ~~~~~~~l~~~l~~-~~~~~vLDiGcG~G~~~~~l~~~~-----------------------------------------  199 (334)
                      .+.++..++...+. .++..++|.+||+|.++...+...                                         
T Consensus       174 ~etlAaa~l~~a~w~~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~  253 (702)
T PRK11783        174 KENLAAAILLRSGWPQEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGLA  253 (702)
T ss_pred             cHHHHHHHHHHcCCCCCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhccc
Confidence            34445555554443 457899999999999987775420                                         


Q ss_pred             -CCCeEEEEeCCHHHHHHHHHHHhcCC---------------C--CCCCCceEEEeCccc-cCCC---CHHHHHHHH---
Q 019861          200 -LFSLVVALDYSENMLKQCYEFVQQES---------------N--FPKDSIDAVHAGAAI-HCWS---SPSTGVAEI---  254 (334)
Q Consensus       200 -~~~~v~giD~s~~~~~~a~~~~~~~~---------------~--~~~~~fD~V~~~~vl-~h~~---d~~~~L~~i---  254 (334)
                       ...+++|+|+++.+++.|++++...+               +  ...++||+|+++==. +-+.   +...+.+++   
T Consensus       254 ~~~~~i~G~Did~~av~~A~~N~~~~g~~~~i~~~~~D~~~~~~~~~~~~~d~IvtNPPYg~r~~~~~~l~~lY~~lg~~  333 (702)
T PRK11783        254 ELPSKFYGSDIDPRVIQAARKNARRAGVAELITFEVKDVADLKNPLPKGPTGLVISNPPYGERLGEEPALIALYSQLGRR  333 (702)
T ss_pred             ccCceEEEEECCHHHHHHHHHHHHHcCCCcceEEEeCChhhcccccccCCCCEEEECCCCcCccCchHHHHHHHHHHHHH
Confidence             01268999999999999999876432               1  112469999997211 1222   222333333   


Q ss_pred             HHcccCCcEEEEEEecc
Q 019861          255 SRVLRPGGVFVGTTYIV  271 (334)
Q Consensus       255 ~r~LkpgG~lii~~~~~  271 (334)
                      .+.+.+|+.+++.++..
T Consensus       334 lk~~~~g~~~~llt~~~  350 (702)
T PRK11783        334 LKQQFGGWNAALFSSSP  350 (702)
T ss_pred             HHHhCCCCeEEEEeCCH
Confidence            33334888888877654

>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins

Probab=97.01  E-value=0.0054  Score=55.68  Aligned_cols=104  Identities=23%  Similarity=0.235  Sum_probs=77.6

Q ss_pred             HHHcccCCCCCCcEEEECCCcCHHHHHHHHcCC-CCeEEEEeCCHHHHHHHHHHHhcCCC----------------CCCC
Q 019861          168 LMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGL-FSLVVALDYSENMLKQCYEFVQQESN----------------FPKD  230 (334)
Q Consensus       168 ~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~-~~~v~giD~s~~~~~~a~~~~~~~~~----------------~~~~  230 (334)
                      .....+.+.++.+|||+.+|.|.=+..+++... .+.+++.|++..-+...++++...+.                ....
T Consensus        76 l~~~~L~~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~D~~~~~~~~~~~  155 (283)
T PF01189_consen   76 LVALALDPQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGVFNVIVINADARKLDPKKPES  155 (283)
T ss_dssp             HHHHHHTTTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-SSEEEEESHHHHHHHHHHTT
T ss_pred             cccccccccccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCCceEEEEeecccccccccccc
Confidence            344456777889999999999998888877743 57999999999999988887665431                1234


Q ss_pred             CceEEEeC------ccccCCCCH----------------HHHHHHHHHcc----cCCcEEEEEEecc
Q 019861          231 SIDAVHAG------AAIHCWSSP----------------STGVAEISRVL----RPGGVFVGTTYIV  271 (334)
Q Consensus       231 ~fD~V~~~------~vl~h~~d~----------------~~~L~~i~r~L----kpgG~lii~~~~~  271 (334)
                      .||.|+..      .++..-++.                ..+|+.+.+.+    +|||+++-++=..
T Consensus       156 ~fd~VlvDaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsTCS~  222 (283)
T PF01189_consen  156 KFDRVLVDAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYSTCSL  222 (283)
T ss_dssp             TEEEEEEECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEESHH
T ss_pred             ccchhhcCCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEeccH
Confidence            69999973      334433331                36799999999    9999999877653

In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....

>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2

Probab=96.92  E-value=0.0022  Score=60.17  Aligned_cols=59  Identities=27%  Similarity=0.427  Sum_probs=47.5

Q ss_pred             HHHHHHHHcccCCCCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcC
Q 019861          163 EKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQE  224 (334)
Q Consensus       163 ~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~  224 (334)
                      +.+.+.+.++++..++ .|||+=||.|.++..+++...  +|+|+|.++.+++.|+++....
T Consensus       183 ~~l~~~~~~~l~~~~~-~vlDlycG~G~fsl~la~~~~--~V~gvE~~~~av~~A~~Na~~N  241 (352)
T PF05958_consen  183 EKLYEQALEWLDLSKG-DVLDLYCGVGTFSLPLAKKAK--KVIGVEIVEEAVEDARENAKLN  241 (352)
T ss_dssp             HHHHHHHHHHCTT-TT-EEEEES-TTTCCHHHHHCCSS--EEEEEES-HHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHhhcCCC-cEEEEeecCCHHHHHHHhhCC--eEEEeeCCHHHHHHHHHHHHHc
Confidence            3556677777876655 899999999999999999876  9999999999999999887653

1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.

>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=96.88  E-value=0.0037  Score=57.03  Aligned_cols=106  Identities=15%  Similarity=0.102  Sum_probs=70.3

Q ss_pred             HHHHcccCCCCCCcEEEECCCcCHHHHHHHHcCCC-CeEEEEeCCHHHHHHHHHHHhcCC----------------CCC-
Q 019861          167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLF-SLVVALDYSENMLKQCYEFVQQES----------------NFP-  228 (334)
Q Consensus       167 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~-~~v~giD~s~~~~~~a~~~~~~~~----------------~~~-  228 (334)
                      +.+..........+|||+|.|.|.-+.++..-.|. ..++-++.|+..-+..........                +++ 
T Consensus       103 ~~L~~~~~dfapqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl~~nv~t~~td~r~s~vt~dRl~lp~  182 (484)
T COG5459         103 DELQKRVPDFAPQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGDTLAENVSTEKTDWRASDVTEDRLSLPA  182 (484)
T ss_pred             HHHHHhCCCcCcchhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHHHHHHhhcccccCCCCCCccchhccCCCc
Confidence            34444445556788999999999888777776653 246667777765555443322110                122 


Q ss_pred             CCCceEEEeCccccCCCCHH---HHHHHHHHcccCCcEEEEEEeccC
Q 019861          229 KDSIDAVHAGAAIHCWSSPS---TGVAEISRVLRPGGVFVGTTYIVD  272 (334)
Q Consensus       229 ~~~fD~V~~~~vl~h~~d~~---~~L~~i~r~LkpgG~lii~~~~~~  272 (334)
                      .+.|++|+..+-|-|..++.   ..++.+..++.|||.++|.++...
T Consensus       183 ad~ytl~i~~~eLl~d~~ek~i~~~ie~lw~l~~~gg~lVivErGtp  229 (484)
T COG5459         183 ADLYTLAIVLDELLPDGNEKPIQVNIERLWNLLAPGGHLVIVERGTP  229 (484)
T ss_pred             cceeehhhhhhhhccccCcchHHHHHHHHHHhccCCCeEEEEeCCCc
Confidence            34567777666666655442   478899999999999999998753

>TIGR00006 S-adenosyl-methyltransferase MraW

Probab=96.79  E-value=0.0093  Score=54.38  Aligned_cols=59  Identities=15%  Similarity=0.091  Sum_probs=49.8

Q ss_pred             HHHHHHcccCCCCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhc
Q 019861          165 EFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQ  223 (334)
Q Consensus       165 ~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~  223 (334)
                      +.+.+.+.+...+++.++|.-+|.|..+..+.+..+.+.++|+|.++.+++.+++++..
T Consensus         8 ll~Evl~~L~~~~ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L~~   66 (305)
T TIGR00006         8 LLDEVVEGLNIKPDGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERLSD   66 (305)
T ss_pred             hHHHHHHhcCcCCCCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHhh
Confidence            34566667777778899999999999999999875457999999999999999988754

Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.

>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]

Probab=96.78  E-value=0.074  Score=45.76  Aligned_cols=119  Identities=14%  Similarity=0.083  Sum_probs=81.9

Q ss_pred             HHHHHcccCCCCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCC--------------CCC-CC
Q 019861          166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES--------------NFP-KD  230 (334)
Q Consensus       166 ~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~--------------~~~-~~  230 (334)
                      ...+..+++.  +.++.||||-.|++..+|.+.++...+++.|+++..++.|.+++....              ++. ++
T Consensus         7 L~~va~~V~~--~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~~l~~~i~vr~~dgl~~l~~~d   84 (226)
T COG2384           7 LTTVANLVKQ--GARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKNNLSERIDVRLGDGLAVLELED   84 (226)
T ss_pred             HHHHHHHHHc--CCceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhcCCcceEEEeccCCccccCccC
Confidence            3455666655  556999999999999999999988899999999999999998877543              122 33


Q ss_pred             CceEEEeCccccCCCCHHHHHHHHHHcccCCcEEEEEEeccCCCCCchHHHHHHHHHhhhhcCccCCCCHHHHHHHHHhC
Q 019861          231 SIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLCRAC  310 (334)
Q Consensus       231 ~fD~V~~~~vl~h~~d~~~~L~~i~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~l~~ll~~~  310 (334)
                      .+|+|+...+=-  .-...+|++-.+.|+.--++++. |+                           -...+++++|...
T Consensus        85 ~~d~ivIAGMGG--~lI~~ILee~~~~l~~~~rlILQ-Pn---------------------------~~~~~LR~~L~~~  134 (226)
T COG2384          85 EIDVIVIAGMGG--TLIREILEEGKEKLKGVERLILQ-PN---------------------------IHTYELREWLSAN  134 (226)
T ss_pred             CcCEEEEeCCcH--HHHHHHHHHhhhhhcCcceEEEC-CC---------------------------CCHHHHHHHHHhC
Confidence            677777544200  01134555555555533334431 11                           1466899999999


Q ss_pred             CCcEEE
Q 019861          311 GLVDFK  316 (334)
Q Consensus       311 Gf~~v~  316 (334)
                      +|..+.
T Consensus       135 ~~~I~~  140 (226)
T COG2384         135 SYEIKA  140 (226)
T ss_pred             Cceeee
Confidence            998876

>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]

Probab=96.44  E-value=0.0051  Score=58.95  Aligned_cols=60  Identities=15%  Similarity=0.274  Sum_probs=50.6

Q ss_pred             HHHHHHHHcccCCCCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcC
Q 019861          163 EKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQE  224 (334)
Q Consensus       163 ~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~  224 (334)
                      +.+...+.+++....+..+||+-||+|.++..+++...  .|+|+++++..++.|+.+....
T Consensus       369 evLys~i~e~~~l~~~k~llDv~CGTG~iglala~~~~--~ViGvEi~~~aV~dA~~nA~~N  428 (534)
T KOG2187|consen  369 EVLYSTIGEWAGLPADKTLLDVCCGTGTIGLALARGVK--RVIGVEISPDAVEDAEKNAQIN  428 (534)
T ss_pred             HHHHHHHHHHhCCCCCcEEEEEeecCCceehhhhcccc--ceeeeecChhhcchhhhcchhc
Confidence            44456677777777788999999999999999998765  9999999999999999876544

>PF03966 Trm112p: Trm112p-like protein; InterPro: IPR005651 This family of short proteins have no known function

Probab=96.43  E-value=0.0014  Score=45.86  Aligned_cols=47  Identities=30%  Similarity=0.560  Sum_probs=30.2

Q ss_pred             cCCCceeCCCCCCCccccCCC-------------------CcccccccCCcccccccccccccccC
Q 019861           67 TSKNVLACPICYKPLTWIGDS-------------------SLSIESAAGSSLQCNTCKKTYSGVGT  113 (334)
Q Consensus        67 ~~~~~l~CPiC~~~l~~~~~~-------------------~~~~~~~~~~~~~C~~C~~~~~~~~~  113 (334)
                      ...++|+||.|+++|.+..-.                   ..-...+..+.+.|++|+..|+..+|
T Consensus         3 ~llniL~Cp~ck~pL~~~~l~~~~~~~~~~lp~~~~~~~~~l~~~~i~eg~L~Cp~c~r~YPI~dG   68 (68)
T PF03966_consen    3 LLLNILACPVCKGPLDWEALVETAQLGLSELPKELPEDYHVLLEVEIVEGELICPECGREYPIRDG   68 (68)
T ss_dssp             GGCGTBB-TTTSSBEHHHHHHHHHHCCCCHCHHCHHCHCEHHCTEETTTTEEEETTTTEEEEEETT
T ss_pred             hHHhhhcCCCCCCcchHHHHHHHHHhCcccCCCCCccchhhhhcccccCCEEEcCCCCCEEeCCCC
Confidence            356789999999988211000                   00002346689999999999998764

The bacterial members are about 60-70 amino acids in length and the eukaryotic examples are about 120 amino acids in length. The C terminus contains the strongest conservation. The function of this family is uncertain. The bacterial members are about 60-70 amino acids in length and the eukaryotic examples are about 120 amino acids in length. The C terminus contains the strongest conservation. The entry contains 2 families: Trm112, which is required for tRNA methylation in Saccharomyces cerevisiae (Baker's yeast) and is found in complexes with 2 tRNA methylases (TRM9 and TRM11) also with putative methyltransferase YDR140W []. The zinc-finger protein Ynr046w is plurifunctional and a component of the eRF1 methyltransferase in yeast []. The crystal structure of Ynr046w has been determined to 1.7 A resolution. It comprises a zinc-binding domain built from both the N- and C-terminal sequences and an inserted domain, absent from bacterial and archaeal orthologs of the protein, composed of three alpha-helices []. UPF0434, which are proteins that are functionally uncharacterised. ; PDB: 3Q87_A 2KPI_A 2K5R_A 2HF1_A 2JS4_A 2J6A_A 2JR6_A 2PK7_A 2JNY_A.

>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]

Probab=96.30  E-value=0.0091  Score=49.33  Aligned_cols=43  Identities=26%  Similarity=0.291  Sum_probs=36.6

Q ss_pred             cEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcC
Q 019861          180 NIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQE  224 (334)
Q Consensus       180 ~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~  224 (334)
                      .|+|+.||.|..+.++++.+.  +|+++|+++..++.++.+..--
T Consensus         2 ~vlD~fcG~GGNtIqFA~~~~--~Viaidid~~~~~~a~hNa~vY   44 (163)
T PF09445_consen    2 TVLDAFCGVGGNTIQFARTFD--RVIAIDIDPERLECAKHNAEVY   44 (163)
T ss_dssp             EEEETT-TTSHHHHHHHHTT---EEEEEES-HHHHHHHHHHHHHT
T ss_pred             EEEEeccCcCHHHHHHHHhCC--eEEEEECCHHHHHHHHHHHHHc
Confidence            699999999999999999976  9999999999999999886643

Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.

>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3)

Probab=95.92  E-value=0.0021  Score=48.99  Aligned_cols=83  Identities=17%  Similarity=0.161  Sum_probs=44.5

Q ss_pred             CceEEEeCccccCC--C--C--HHHHHHHHHHcccCCcEEEEEEeccCCCCCchHHHHHHHHHhhhhcCccCCCCHHHHH
Q 019861          231 SIDAVHAGAAIHCW--S--S--PSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIE  304 (334)
Q Consensus       231 ~fD~V~~~~vl~h~--~--d--~~~~L~~i~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~l~  304 (334)
                      .||+|+|..|.-++  .  |  ...+++.+++.|+|||.+++......+..............+..    . -+.++++.
T Consensus         1 ~yDvilclSVtkWIHLn~GD~Gl~~~f~~~~~~L~pGG~lilEpQ~w~sY~~~~~~~~~~~~n~~~----i-~lrP~~F~   75 (110)
T PF06859_consen    1 QYDVILCLSVTKWIHLNWGDEGLKRFFRRIYSLLRPGGILILEPQPWKSYKKAKRLSEEIRENYKS----I-KLRPDQFE   75 (110)
T ss_dssp             -EEEEEEES-HHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE---HHHHHTTTTS-HHHHHHHHH---------GGGHH
T ss_pred             CccEEEEEEeeEEEEecCcCHHHHHHHHHHHHhhCCCCEEEEeCCCcHHHHHHhhhhHHHHhHHhc----e-EEChHHHH
Confidence            48999998885433  2  2  24789999999999999999766543221111112222222222    1 14566788


Q ss_pred             HHHHh--CCCcEEEEe
Q 019861          305 DLCRA--CGLVDFKCT  318 (334)
Q Consensus       305 ~ll~~--~Gf~~v~~~  318 (334)
                      +.|.+  .||..++..
T Consensus        76 ~~L~~~evGF~~~e~~   91 (110)
T PF06859_consen   76 DYLLEPEVGFSSVEEL   91 (110)
T ss_dssp             HHHTSTTT---EEEEE
T ss_pred             HHHHhcccceEEEEEc
Confidence            88877  699887743

Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.

>COG4076 Predicted RNA methylase [General function prediction only]

Probab=95.91  E-value=0.012  Score=49.16  Aligned_cols=86  Identities=15%  Similarity=0.179  Sum_probs=61.4

Q ss_pred             CcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCC------------CCCCCCceEEEeCcc--ccCC
Q 019861          179 GNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES------------NFPKDSIDAVHAGAA--IHCW  244 (334)
Q Consensus       179 ~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~------------~~~~~~fD~V~~~~v--l~h~  244 (334)
                      ..+.|+|.|+|-++...+.+..  +|++++.++.....|.+++.-.+            .+.-...|+|+|-..  .--.
T Consensus        34 d~~~DLGaGsGiLs~~Aa~~A~--rViAiE~dPk~a~~a~eN~~v~g~~n~evv~gDA~~y~fe~ADvvicEmlDTaLi~  111 (252)
T COG4076          34 DTFADLGAGSGILSVVAAHAAE--RVIAIEKDPKRARLAEENLHVPGDVNWEVVVGDARDYDFENADVVICEMLDTALIE  111 (252)
T ss_pred             hceeeccCCcchHHHHHHhhhc--eEEEEecCcHHHHHhhhcCCCCCCcceEEEecccccccccccceeHHHHhhHHhhc
Confidence            6899999999999988888765  99999999999999998853221            111245677877432  1111


Q ss_pred             CCHHHHHHHHHHcccCCcEEEE
Q 019861          245 SSPSTGVAEISRVLRPGGVFVG  266 (334)
Q Consensus       245 ~d~~~~L~~i~r~LkpgG~lii  266 (334)
                      .....++..+.+.|+-++.++=
T Consensus       112 E~qVpV~n~vleFLr~d~tiiP  133 (252)
T COG4076         112 EKQVPVINAVLEFLRYDPTIIP  133 (252)
T ss_pred             ccccHHHHHHHHHhhcCCcccc
Confidence            1234678888889999887764

>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]

Probab=95.83  E-value=0.043  Score=51.25  Aligned_cols=106  Identities=14%  Similarity=0.070  Sum_probs=70.2

Q ss_pred             HHHHHHHHcccCCCCCCcEEEECCCcCHHHHHHHHcCCC--------------------------------C-------e
Q 019861          163 EKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLF--------------------------------S-------L  203 (334)
Q Consensus       163 ~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~--------------------------------~-------~  203 (334)
                      +.++..+..+.+..++..++|--||+|.++...+..+.+                                .       .
T Consensus       177 etLAaAil~lagw~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~  256 (381)
T COG0116         177 ETLAAAILLLAGWKPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPI  256 (381)
T ss_pred             HHHHHHHHHHcCCCCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccce
Confidence            444555666666666789999999999998888766531                                1       2


Q ss_pred             EEEEeCCHHHHHHHHHHHhcCC-------------CCCC--CCceEEEeCc--cccCCCCH-------HHHHHHHHHccc
Q 019861          204 VVALDYSENMLKQCYEFVQQES-------------NFPK--DSIDAVHAGA--AIHCWSSP-------STGVAEISRVLR  259 (334)
Q Consensus       204 v~giD~s~~~~~~a~~~~~~~~-------------~~~~--~~fD~V~~~~--vl~h~~d~-------~~~L~~i~r~Lk  259 (334)
                      ++|+|+++.+++.|+.+....+             .+..  +.+|+|+++=  ... +.+.       ..+.+.+++.++
T Consensus       257 ~~G~Did~r~i~~Ak~NA~~AGv~d~I~f~~~d~~~l~~~~~~~gvvI~NPPYGeR-lg~~~~v~~LY~~fg~~lk~~~~  335 (381)
T COG0116         257 IYGSDIDPRHIEGAKANARAAGVGDLIEFKQADATDLKEPLEEYGVVISNPPYGER-LGSEALVAKLYREFGRTLKRLLA  335 (381)
T ss_pred             EEEecCCHHHHHHHHHHHHhcCCCceEEEEEcchhhCCCCCCcCCEEEeCCCcchh-cCChhhHHHHHHHHHHHHHHHhc
Confidence            7799999999999999876543             1222  5788988862  111 1111       234455666666


Q ss_pred             CCcEEEEEEe
Q 019861          260 PGGVFVGTTY  269 (334)
Q Consensus       260 pgG~lii~~~  269 (334)
                      ..+..++++.
T Consensus       336 ~ws~~v~tt~  345 (381)
T COG0116         336 GWSRYVFTTS  345 (381)
T ss_pred             CCceEEEEcc
Confidence            6666666544

>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]

Probab=95.83  E-value=0.14  Score=48.05  Aligned_cols=90  Identities=24%  Similarity=0.287  Sum_probs=65.4

Q ss_pred             CCCcEEEECCCc-CHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCCC--------------CC-CCCceEEEeCcc
Q 019861          177 LGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESN--------------FP-KDSIDAVHAGAA  240 (334)
Q Consensus       177 ~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~--------------~~-~~~fD~V~~~~v  240 (334)
                      ++.+|+=+|||. |.++..+++......++.+|.++.-++.|++.......              .. ...+|+|+-.-.
T Consensus       168 ~~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~~~~~~~~~~~~~~~~~~~t~g~g~D~vie~~G  247 (350)
T COG1063         168 PGGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGADVVVNPSEDDAGAEILELTGGRGADVVIEAVG  247 (350)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCCCeEeecCccccHHHHHHHHhCCCCCCEEEECCC
Confidence            345999999998 77766677665457999999999999999985543311              01 125888886544


Q ss_pred             ccCCCCHHHHHHHHHHcccCCcEEEEEEeccC
Q 019861          241 IHCWSSPSTGVAEISRVLRPGGVFVGTTYIVD  272 (334)
Q Consensus       241 l~h~~d~~~~L~~i~r~LkpgG~lii~~~~~~  272 (334)
                           . ..++..+.+++++||.+++.-....
T Consensus       248 -----~-~~~~~~ai~~~r~gG~v~~vGv~~~  273 (350)
T COG1063         248 -----S-PPALDQALEALRPGGTVVVVGVYGG  273 (350)
T ss_pred             -----C-HHHHHHHHHHhcCCCEEEEEeccCC
Confidence                 2 2368899999999999888666544

>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) []

Probab=95.79  E-value=0.015  Score=44.03  Aligned_cols=33  Identities=24%  Similarity=0.379  Sum_probs=28.3

Q ss_pred             CCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCC
Q 019861          176 VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYS  210 (334)
Q Consensus       176 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s  210 (334)
                      .+....+|||||+|.+...|...|.  .-.|+|.-
T Consensus        57 ~~~~~FVDlGCGNGLLV~IL~~EGy--~G~GiD~R   89 (112)
T PF07757_consen   57 QKFQGFVDLGCGNGLLVYILNSEGY--PGWGIDAR   89 (112)
T ss_pred             CCCCceEEccCCchHHHHHHHhCCC--Cccccccc
Confidence            3456899999999999999999987  78899963

; GO: 0008168 methyltransferase activity

>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]

Probab=95.73  E-value=0.12  Score=50.77  Aligned_cols=132  Identities=21%  Similarity=0.138  Sum_probs=90.4

Q ss_pred             chhHHHHHHhHHHhhH---h--cCCCCcHHHHHHHHcccCCCCCCcEEEECCCcCHHHHHHHHcCC----CCeEEEEeCC
Q 019861          140 PFMSFIYERGWRQNFV---W--GGFPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGL----FSLVVALDYS  210 (334)
Q Consensus       140 ~~~~~~~~~~w~~~~~---~--~~~~~~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~----~~~v~giD~s  210 (334)
                      +.+...|+...++...   .  +.+.-|....+.+.+.+.+.+..+|+|..||+|.++....+...    ...++|.|++
T Consensus       144 d~~G~~yE~ll~~fa~~~~k~~GEfyTP~~v~~liv~~l~~~~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~  223 (489)
T COG0286         144 DLFGDAYEYLLRKFAEAEGKEAGEFYTPREVSELIVELLDPEPRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEIN  223 (489)
T ss_pred             cchhHHHHHHHHHHHHhcCCCCCccCChHHHHHHHHHHcCCCCCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCC
Confidence            4455555544343222   1  55778889999999999877778999999999998777665421    2579999999


Q ss_pred             HHHHHHHHHHHhcCC---------------C-C----CCCCceEEEeCccc---c-------CCC--------------C
Q 019861          211 ENMLKQCYEFVQQES---------------N-F----PKDSIDAVHAGAAI---H-------CWS--------------S  246 (334)
Q Consensus       211 ~~~~~~a~~~~~~~~---------------~-~----~~~~fD~V~~~~vl---~-------h~~--------------d  246 (334)
                      +.....++.++--++               + .    ..+.||+|+++-=+   .       +..              .
T Consensus       224 ~~t~~l~~mN~~lhgi~~~~~i~~~dtl~~~~~~~~~~~~~~D~viaNPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  303 (489)
T COG0286         224 DTTYRLAKMNLILHGIEGDANIRHGDTLSNPKHDDKDDKGKFDFVIANPPFSGKGWGGDLLESEQDERFFFYGVFPTKNS  303 (489)
T ss_pred             HHHHHHHHHHHHHhCCCccccccccccccCCcccccCCccceeEEEeCCCCCccccccccccccccccccccCCCCCCCc
Confidence            999998887533111               1 1    23679999875211   1       110              0


Q ss_pred             H-HHHHHHHHHcccCCcEEEEEEecc
Q 019861          247 P-STGVAEISRVLRPGGVFVGTTYIV  271 (334)
Q Consensus       247 ~-~~~L~~i~r~LkpgG~lii~~~~~  271 (334)
                      . .++++.+...|+|||+..+..+..
T Consensus       304 ~~~af~~h~~~~l~~~g~aaivl~~g  329 (489)
T COG0286         304 ADLAFLQHILYKLKPGGRAAIVLPDG  329 (489)
T ss_pred             hHHHHHHHHHHhcCCCceEEEEecCC
Confidence            1 478999999999999777776654

>KOG4058 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.71  E-value=0.059  Score=43.31  Aligned_cols=109  Identities=14%  Similarity=0.127  Sum_probs=72.4

Q ss_pred             CCCCcHHHHHHHHcccCCCCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcC-------------
Q 019861          158 GFPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQE-------------  224 (334)
Q Consensus       158 ~~~~~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~-------------  224 (334)
                      ..+...+..+.++.++...+.++.+|+|+|.|....+.++.+. ...+|+++++-.+.+++-..-..             
T Consensus        53 YVpAtteQv~nVLSll~~n~~GklvDlGSGDGRiVlaaar~g~-~~a~GvELNpwLVaysrl~a~R~g~~k~trf~Rkdl  131 (199)
T KOG4058|consen   53 YVPATTEQVENVLSLLRGNPKGKLVDLGSGDGRIVLAAARCGL-RPAVGVELNPWLVAYSRLHAWRAGCAKSTRFRRKDL  131 (199)
T ss_pred             ccCccHHHHHHHHHHccCCCCCcEEeccCCCceeehhhhhhCC-CcCCceeccHHHHHHHHHHHHHHhcccchhhhhhhh
Confidence            3444566677777888777778999999999999999988872 47899999999888876432211             


Q ss_pred             CCCCCCCceEEEeCccccCCCCHHHHHHHHHHcccCCcEEEEEEec
Q 019861          225 SNFPKDSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYI  270 (334)
Q Consensus       225 ~~~~~~~fD~V~~~~vl~h~~d~~~~L~~i~r~LkpgG~lii~~~~  270 (334)
                      ..+.-..|..|+.+.+-.-++|.+   .++..-|..+..++..-+-
T Consensus       132 wK~dl~dy~~vviFgaes~m~dLe---~KL~~E~p~nt~vvacRFP  174 (199)
T KOG4058|consen  132 WKVDLRDYRNVVIFGAESVMPDLE---DKLRTELPANTRVVACRFP  174 (199)
T ss_pred             hhccccccceEEEeehHHHHhhhH---HHHHhhCcCCCeEEEEecC
Confidence            123334556666555433344432   3455567777777664443

>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D

Probab=95.70  E-value=0.0029  Score=48.24  Aligned_cols=86  Identities=16%  Similarity=0.189  Sum_probs=32.2

Q ss_pred             EEECCCcCHHHHHHHHcCCC---CeEEEEeCCHH---HHHHHHHH-HhcC-----C-------CCCCCCceEEEeCcccc
Q 019861          182 IDASCGSGLFSRIFAKSGLF---SLVVALDYSEN---MLKQCYEF-VQQE-----S-------NFPKDSIDAVHAGAAIH  242 (334)
Q Consensus       182 LDiGcG~G~~~~~l~~~~~~---~~v~giD~s~~---~~~~a~~~-~~~~-----~-------~~~~~~fD~V~~~~vl~  242 (334)
                      ||||+..|..+..+++....   .+++++|+.+.   ..+..++. +...     .       .++.+++|+|+.... |
T Consensus         1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~l~~~~~~~~dli~iDg~-H   79 (106)
T PF13578_consen    1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPGDEQAQEIIKKAGLSDRVEFIQGDSPDFLPSLPDGPIDLIFIDGD-H   79 (106)
T ss_dssp             --------------------------EEEESS------------GGG-BTEEEEES-THHHHHHHHH--EEEEEEES---
T ss_pred             CccccccccccccccccccccccCCEEEEECCCcccccchhhhhcCCCCeEEEEEcCcHHHHHHcCCCCEEEEEECCC-C
Confidence            68999999888777765322   37999999984   33333321 1110     0       122478999998752 1


Q ss_pred             CCCCHHHHHHHHHHcccCCcEEEEEE
Q 019861          243 CWSSPSTGVAEISRVLRPGGVFVGTT  268 (334)
Q Consensus       243 h~~d~~~~L~~i~r~LkpgG~lii~~  268 (334)
                      ..+.....++.+.+.|+|||++++-+
T Consensus        80 ~~~~~~~dl~~~~~~l~~ggviv~dD  105 (106)
T PF13578_consen   80 SYEAVLRDLENALPRLAPGGVIVFDD  105 (106)
T ss_dssp             -HHHHHHHHHHHGGGEEEEEEEEEE-
T ss_pred             CHHHHHHHHHHHHHHcCCCeEEEEeC
Confidence            11233466888999999999998753

>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria

Probab=95.70  E-value=0.024  Score=51.75  Aligned_cols=69  Identities=19%  Similarity=0.243  Sum_probs=49.9

Q ss_pred             HHHHcccCCCCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCCCCCCCCceEEEeCc
Q 019861          167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKDSIDAVHAGA  239 (334)
Q Consensus       167 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~fD~V~~~~  239 (334)
                      +.+.+.+.+.+++.+||.--|.|..+..+.+..+.+.++|+|.++.+++.+++++...    ++.|.++...+
T Consensus        10 ~Evl~~L~~~~~g~~vD~T~G~GGHS~aiL~~~~~~~li~~DrD~~a~~~a~~~l~~~----~~r~~~~~~~F   78 (310)
T PF01795_consen   10 KEVLEALNPKPGGIYVDCTFGGGGHSKAILEKLPNGRLIGIDRDPEALERAKERLKKF----DDRFIFIHGNF   78 (310)
T ss_dssp             HHHHHHHT--TT-EEEETT-TTSHHHHHHHHT-TT-EEEEEES-HHHHHHHHCCTCCC----CTTEEEEES-G
T ss_pred             HHHHHhhCcCCCceEEeecCCcHHHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHhhc----cceEEEEeccH
Confidence            4555666677889999999999999999999877789999999999999998766532    46677777664

The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.

>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]

Probab=95.70  E-value=0.066  Score=47.29  Aligned_cols=94  Identities=17%  Similarity=0.080  Sum_probs=65.1

Q ss_pred             CCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHH--HHHH----HHhc---CC-------------CCCCCC-ceE
Q 019861          178 GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLK--QCYE----FVQQ---ES-------------NFPKDS-IDA  234 (334)
Q Consensus       178 ~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~--~a~~----~~~~---~~-------------~~~~~~-fD~  234 (334)
                      ..+|||+|+|+|.-+..++... ..+|.-.|+......  ..+.    ....   ..             .+.... +|+
T Consensus        87 ~~~vlELGsGtglvG~~aa~~~-~~~v~ltD~~~~~~~L~~~~~~~~~~l~~~g~~v~v~~L~Wg~~~~~~~~~~~~~Dl  165 (248)
T KOG2793|consen   87 YINVLELGSGTGLVGILAALLL-GAEVVLTDLPKVVENLKFNRDKNNIALNQLGGSVIVAILVWGNALDVSFRLPNPFDL  165 (248)
T ss_pred             ceeEEEecCCccHHHHHHHHHh-cceeccCCchhhHHHHHHhhhhhhhhhhhcCCceeEEEEecCCcccHhhccCCcccE
Confidence            5679999999996666666643 358888886543222  2211    1111   10             011233 999


Q ss_pred             EEeCccccCCCCHHHHHHHHHHcccCCcEEEEEEeccC
Q 019861          235 VHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVD  272 (334)
Q Consensus       235 V~~~~vl~h~~d~~~~L~~i~r~LkpgG~lii~~~~~~  272 (334)
                      |++..++.+-..+..++.-++..|..+|.+++.++.++
T Consensus       166 ilasDvvy~~~~~e~Lv~tla~ll~~~~~i~l~~~lr~  203 (248)
T KOG2793|consen  166 ILASDVVYEEESFEGLVKTLAFLLAKDGTIFLAYPLRR  203 (248)
T ss_pred             EEEeeeeecCCcchhHHHHHHHHHhcCCeEEEEEeccc
Confidence            99999999988899999999999999998888887764

>PF13719 zinc_ribbon_5: zinc-ribbon domain

Probab=95.68  E-value=0.0059  Score=37.13  Aligned_cols=36  Identities=22%  Similarity=0.610  Sum_probs=24.7

Q ss_pred             CceeCCCCCCCccccCCCCcccccccCCcccccccccccc
Q 019861           70 NVLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYS  109 (334)
Q Consensus        70 ~~l~CPiC~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~~  109 (334)
                      +...||.|+........    .-......++|+.|+++|.
T Consensus         1 M~i~CP~C~~~f~v~~~----~l~~~~~~vrC~~C~~~f~   36 (37)
T PF13719_consen    1 MIITCPNCQTRFRVPDD----KLPAGGRKVRCPKCGHVFR   36 (37)
T ss_pred             CEEECCCCCceEEcCHH----HcccCCcEEECCCCCcEee
Confidence            35789999997655431    1112346899999999874

>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes

Probab=95.60  E-value=0.028  Score=51.02  Aligned_cols=63  Identities=19%  Similarity=0.224  Sum_probs=37.7

Q ss_pred             CCcEEEECCCcCHHHHHH--HHcCCCCeEEEEeCCHHHHHHHHHHHhcCCC---------------------CCCCCceE
Q 019861          178 GGNIIDASCGSGLFSRIF--AKSGLFSLVVALDYSENMLKQCYEFVQQESN---------------------FPKDSIDA  234 (334)
Q Consensus       178 ~~~vLDiGcG~G~~~~~l--~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~---------------------~~~~~fD~  234 (334)
                      .-++||||+|....-..|  ...++  +++|+|+++..++.|++++.....                     .+++.||+
T Consensus       103 ~v~glDIGTGAscIYpLLg~~~~~W--~fvaTdID~~sl~~A~~nv~~N~~L~~~I~l~~~~~~~~i~~~i~~~~e~~df  180 (299)
T PF05971_consen  103 KVRGLDIGTGASCIYPLLGAKLYGW--SFVATDIDPKSLESARENVERNPNLESRIELRKQKNPDNIFDGIIQPNERFDF  180 (299)
T ss_dssp             --EEEEES-TTTTHHHHHHHHHH----EEEEEES-HHHHHHHHHHHHHT-T-TTTEEEEE--ST-SSTTTSTT--S-EEE
T ss_pred             ceEeecCCccHHHHHHHHhhhhcCC--eEEEecCCHHHHHHHHHHHHhccccccceEEEEcCCccccchhhhcccceeeE
Confidence            358999999998553333  33355  999999999999999998775510                     12357999


Q ss_pred             EEeCcccc
Q 019861          235 VHAGAAIH  242 (334)
Q Consensus       235 V~~~~vl~  242 (334)
                      .+|+==++
T Consensus       181 tmCNPPFy  188 (299)
T PF05971_consen  181 TMCNPPFY  188 (299)
T ss_dssp             EEE-----
T ss_pred             EecCCccc
Confidence            99975444

The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.

>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]

Probab=95.60  E-value=0.1  Score=48.22  Aligned_cols=89  Identities=20%  Similarity=0.204  Sum_probs=63.5

Q ss_pred             CCCCCCcEEEECCC-cCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcC-------CCCC--CCCceEEEeCccccC
Q 019861          174 KPVLGGNIIDASCG-SGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQE-------SNFP--KDSIDAVHAGAAIHC  243 (334)
Q Consensus       174 ~~~~~~~vLDiGcG-~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~-------~~~~--~~~fD~V~~~~vl~h  243 (334)
                      +..++.+|+=+|+| -|..+.++++.- ..+|+++|.+++-.+.|++.-...       ...+  .+.||+|+..-. . 
T Consensus       163 ~~~pG~~V~I~G~GGlGh~avQ~Aka~-ga~Via~~~~~~K~e~a~~lGAd~~i~~~~~~~~~~~~~~~d~ii~tv~-~-  239 (339)
T COG1064         163 NVKPGKWVAVVGAGGLGHMAVQYAKAM-GAEVIAITRSEEKLELAKKLGADHVINSSDSDALEAVKEIADAIIDTVG-P-  239 (339)
T ss_pred             CCCCCCEEEEECCcHHHHHHHHHHHHc-CCeEEEEeCChHHHHHHHHhCCcEEEEcCCchhhHHhHhhCcEEEECCC-h-
Confidence            45678999999988 245666777743 269999999999999998753221       1111  123898887754 3 


Q ss_pred             CCCHHHHHHHHHHcccCCcEEEEEEec
Q 019861          244 WSSPSTGVAEISRVLRPGGVFVGTTYI  270 (334)
Q Consensus       244 ~~d~~~~L~~i~r~LkpgG~lii~~~~  270 (334)
                           ..+....+.|++||.+++.-..
T Consensus       240 -----~~~~~~l~~l~~~G~~v~vG~~  261 (339)
T COG1064         240 -----ATLEPSLKALRRGGTLVLVGLP  261 (339)
T ss_pred             -----hhHHHHHHHHhcCCEEEEECCC
Confidence                 3478888999999999987665

>KOG2539 consensus Mitochondrial/chloroplast ribosome small subunit component [Translation, ribosomal structure and biogenesis]

Probab=95.34  E-value=0.038  Score=52.51  Aligned_cols=106  Identities=17%  Similarity=0.016  Sum_probs=70.9

Q ss_pred             HHHHcccCCCCCCcEEEECCCcCHHHHHHHHc--CCCCeEEEEeCCHHHHHHHHHHHhcCC-----------------CC
Q 019861          167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKS--GLFSLVVALDYSENMLKQCYEFVQQES-----------------NF  227 (334)
Q Consensus       167 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~--~~~~~v~giD~s~~~~~~a~~~~~~~~-----------------~~  227 (334)
                      ..+...-.......++|+|.|.|.-...+...  .-...++.||.+..|.......+....                 |.
T Consensus       190 ~e~~~~~p~f~pd~~~dfgsg~~~~~~a~~~lwr~t~~~~~~Vdrs~~~~~~~e~~lr~~~~~g~~~v~~~~~~r~~~pi  269 (491)
T KOG2539|consen  190 KEINMRSPKFRPDLLRDFGSGAGNGGWAAVLLWRQTKREYSLVDRSRAMLKQSEKNLRDGSHIGEPIVRKLVFHRQRLPI  269 (491)
T ss_pred             HHHhhcCcccChHHHHHHHhhcccchhhhhhhcccccceeEeeccchHHHHHHHHhhcChhhcCchhccccchhcccCCC
Confidence            33433344445678999998877543333322  223478999999999998887655410                 22


Q ss_pred             C-CCCceEEEeCccccCCCCHH---HHHHH-HHHcccCCcEEEEEEeccC
Q 019861          228 P-KDSIDAVHAGAAIHCWSSPS---TGVAE-ISRVLRPGGVFVGTTYIVD  272 (334)
Q Consensus       228 ~-~~~fD~V~~~~vl~h~~d~~---~~L~~-i~r~LkpgG~lii~~~~~~  272 (334)
                      + ...||+|++.+.++++.++.   .+.++ .++..++||.+++......
T Consensus       270 ~~~~~yDlvi~ah~l~~~~s~~~R~~v~~s~~r~~~r~g~~lViIe~g~~  319 (491)
T KOG2539|consen  270 DIKNGYDLVICAHKLHELGSKFSRLDVPESLWRKTDRSGYFLVIIEKGTT  319 (491)
T ss_pred             CcccceeeEEeeeeeeccCCchhhhhhhHHHHHhccCCCceEEEEecCCc
Confidence            2 34599999999999998764   33344 4556788999998877653

>PRK11524 putative methyltransferase; Provisional

Probab=95.31  E-value=0.061  Score=48.88  Aligned_cols=59  Identities=15%  Similarity=0.143  Sum_probs=49.6

Q ss_pred             cHHHHHHHHcccCCCCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhc
Q 019861          162 PEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQ  223 (334)
Q Consensus       162 ~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~  223 (334)
                      |.++.+.+..... .+|..|||-=+|+|..+.+..+.+.  +++|+|++++..+.|++++..
T Consensus       194 P~~L~erlI~~~S-~~GD~VLDPF~GSGTT~~AA~~lgR--~~IG~Ei~~~Y~~~a~~Rl~~  252 (284)
T PRK11524        194 PEALLKRIILASS-NPGDIVLDPFAGSFTTGAVAKASGR--KFIGIEINSEYIKMGLRRLDV  252 (284)
T ss_pred             hHHHHHHHHHHhC-CCCCEEEECCCCCcHHHHHHHHcCC--CEEEEeCCHHHHHHHHHHHHh
Confidence            4566666665554 3588999999999999999999887  999999999999999999764

>KOG2730 consensus Methylase [General function prediction only]

Probab=95.07  E-value=0.039  Score=47.35  Aligned_cols=60  Identities=27%  Similarity=0.298  Sum_probs=46.9

Q ss_pred             cHHHHHHHHcccCC-CCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhc
Q 019861          162 PEKEFELMKGYLKP-VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQ  223 (334)
Q Consensus       162 ~~~~~~~l~~~l~~-~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~  223 (334)
                      ++.....++..... .....|+|.-||.|.....++..++  .|+++|+++.-+..|+.+++-
T Consensus        78 pe~ia~~iA~~v~~~~~~~~iidaf~g~gGntiqfa~~~~--~VisIdiDPikIa~AkhNaei  138 (263)
T KOG2730|consen   78 PEKIAEHIANRVVACMNAEVIVDAFCGVGGNTIQFALQGP--YVIAIDIDPVKIACARHNAEV  138 (263)
T ss_pred             cHHHHHHHHHHHHHhcCcchhhhhhhcCCchHHHHHHhCC--eEEEEeccHHHHHHHhcccee
Confidence            44445555544321 1456999999999999999999998  999999999999999987654

>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases

Probab=95.02  E-value=0.068  Score=46.25  Aligned_cols=58  Identities=16%  Similarity=0.154  Sum_probs=43.9

Q ss_pred             CCCcHHHHHHHHcccCCCCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHH
Q 019861          159 FPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYE  219 (334)
Q Consensus       159 ~~~~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~  219 (334)
                      ...|.++.+.+.+.... ++..|||.=||+|..+.+....+.  +++|+|+++...+.|++
T Consensus       174 ~~kP~~l~~~lI~~~t~-~gdiVlDpF~GSGTT~~aa~~l~R--~~ig~E~~~~y~~~a~~  231 (231)
T PF01555_consen  174 TQKPVELIERLIKASTN-PGDIVLDPFAGSGTTAVAAEELGR--RYIGIEIDEEYCEIAKK  231 (231)
T ss_dssp             T-S-HHHHHHHHHHHS--TT-EEEETT-TTTHHHHHHHHTT---EEEEEESSHHHHHHHHH
T ss_pred             ecCCHHHHHHHHHhhhc-cceeeehhhhccChHHHHHHHcCC--eEEEEeCCHHHHHHhcC
Confidence            34456777777766543 488999999999999999999987  99999999999998864

In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....

>COG3809 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=95.00  E-value=0.011  Score=41.55  Aligned_cols=40  Identities=25%  Similarity=0.413  Sum_probs=29.2

Q ss_pred             ceeCCCCCCCccccCCCCcccccccCCcccccccccccccccCcccc
Q 019861           71 VLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSGVGTHFDM  117 (334)
Q Consensus        71 ~l~CPiC~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~~~~~~~~~~  117 (334)
                      ++-||+|+-.+......+       .++-.|+.|+-++..+...-.+
T Consensus         1 ~llCP~C~v~l~~~~rs~-------vEiD~CPrCrGVWLDrGELdKl   40 (88)
T COG3809           1 MLLCPICGVELVMSVRSG-------VEIDYCPRCRGVWLDRGELDKL   40 (88)
T ss_pred             CcccCcCCceeeeeeecC-------ceeeeCCccccEeecchhHHHH
Confidence            367999999886655332       2688999999999887544333

>TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family

Probab=94.98  E-value=1  Score=40.32  Aligned_cols=147  Identities=9%  Similarity=-0.053  Sum_probs=82.9

Q ss_pred             HHHcccCCCCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCC----------------------
Q 019861          168 LMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES----------------------  225 (334)
Q Consensus       168 ~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~----------------------  225 (334)
                      .+.+.+... ...|+.+|||-=.....+.. .....++=+|. ++.++.-++.+....                      
T Consensus        73 ~i~~~~~~g-~~qvV~LGaGlDTr~~Rl~~-~~~~~~~EvD~-P~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~~w~~~L  149 (260)
T TIGR00027        73 FLLAAVAAG-IRQVVILGAGLDTRAYRLPW-PDGTRVFEVDQ-PAVLAFKEKVLAELGAEPPAHRRAVPVDLRQDWPAAL  149 (260)
T ss_pred             HHHHHHhcC-CcEEEEeCCccccHHHhcCC-CCCCeEEECCC-hHHHHHHHHHHHHcCCCCCCceEEeccCchhhHHHHH
Confidence            334444432 34799999997655544432 22234555553 445554444444211                      


Q ss_pred             ---CCCCCCceEEEeCccccCCCCH--HHHHHHHHHcccCCcEEEEEEeccCCCCCchHHHHHHHHHh--hhhcCccCCC
Q 019861          226 ---NFPKDSIDAVHAGAAIHCWSSP--STGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNM--MQISGSYTFL  298 (334)
Q Consensus       226 ---~~~~~~fD~V~~~~vl~h~~d~--~~~L~~i~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~  298 (334)
                         .+..+.--++++-.++.+++..  ..+|+.+.+...||+.+++.....-................  .........+
T Consensus       150 ~~~gfd~~~ptl~i~EGvl~YL~~~~v~~ll~~i~~~~~~gs~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (260)
T TIGR00027       150 AAAGFDPTAPTAWLWEGLLMYLTEEAVDALLAFIAELSAPGSRLAFDYVRPLDGEWRAGMRAPVYHAARGVDGSGLVFGI  229 (260)
T ss_pred             HhCCCCCCCCeeeeecchhhcCCHHHHHHHHHHHHHhCCCCcEEEEEeccccchhHHHHHHHHHHHhhhcccccccccCC
Confidence               1222344577778888888754  47899999888899998886655311101101111111111  1112234457


Q ss_pred             CHHHHHHHHHhCCCcEEEE
Q 019861          299 SEREIEDLCRACGLVDFKC  317 (334)
Q Consensus       299 t~~~l~~ll~~~Gf~~v~~  317 (334)
                      +.+++.++|+..||++...
T Consensus       230 ~~~~~~~~l~~~Gw~~~~~  248 (260)
T TIGR00027       230 DRADVAEWLAERGWRASEH  248 (260)
T ss_pred             ChhhHHHHHHHCCCeeecC
Confidence            8999999999999998764

This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants.

>PRK13699 putative methylase; Provisional

Probab=94.74  E-value=0.13  Score=45.12  Aligned_cols=61  Identities=13%  Similarity=0.144  Sum_probs=49.6

Q ss_pred             CCcHHHHHHHHcccCCCCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhc
Q 019861          160 PGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQ  223 (334)
Q Consensus       160 ~~~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~  223 (334)
                      ..|.++.+.+..... .++..|||.=||+|..+.+..+.+.  +++|+|+++...+.+.+++..
T Consensus       147 ~kP~~l~~~~i~~~s-~~g~~vlDpf~Gsgtt~~aa~~~~r--~~~g~e~~~~y~~~~~~r~~~  207 (227)
T PRK13699        147 EKPVTSLQPLIESFT-HPNAIVLDPFAGSGSTCVAALQSGR--RYIGIELLEQYHRAGQQRLAA  207 (227)
T ss_pred             CCcHHHHHHHHHHhC-CCCCEEEeCCCCCCHHHHHHHHcCC--CEEEEecCHHHHHHHHHHHHH
Confidence            345666666665444 3588999999999999999998877  999999999999999887654

>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1

Probab=94.71  E-value=0.33  Score=45.98  Aligned_cols=96  Identities=19%  Similarity=0.198  Sum_probs=66.1

Q ss_pred             CCCCCCcEEEECCCc-CHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhc-----CC---------CC-CCCCceEEEe
Q 019861          174 KPVLGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQ-----ES---------NF-PKDSIDAVHA  237 (334)
Q Consensus       174 ~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~-----~~---------~~-~~~~fD~V~~  237 (334)
                      ...++.+||.+|+|. |..+..+++......++++|.++...+.+++....     ..         .+ ....+|+|+-
T Consensus       181 ~~~~g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~l~~~~~~~~~D~vld  260 (386)
T cd08283         181 EVKPGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEMARSHLGAETINFEEVDDVVEALRELTGGRGPDVCID  260 (386)
T ss_pred             cCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCCcEEEcCCcchHHHHHHHHHcCCCCCCEEEE
Confidence            445678999999987 77877777775323699999999988888765111     00         01 1236898887


Q ss_pred             Ccc-----------ccCC----CCHHHHHHHHHHcccCCcEEEEEEe
Q 019861          238 GAA-----------IHCW----SSPSTGVAEISRVLRPGGVFVGTTY  269 (334)
Q Consensus       238 ~~v-----------l~h~----~d~~~~L~~i~r~LkpgG~lii~~~  269 (334)
                      .-.           +.|.    .++...+.++.+.|+++|.+++...
T Consensus       261 ~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~g~  307 (386)
T cd08283         261 AVGMEAHGSPLHKAEQALLKLETDRPDALREAIQAVRKGGTVSIIGV  307 (386)
T ss_pred             CCCCcccccccccccccccccccCchHHHHHHHHHhccCCEEEEEcC
Confidence            431           1122    4566789999999999999988653

Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T

>PF13717 zinc_ribbon_4: zinc-ribbon domain

Probab=94.70  E-value=0.018  Score=34.73  Aligned_cols=35  Identities=20%  Similarity=0.660  Sum_probs=23.9

Q ss_pred             CceeCCCCCCCccccCCCCcccccccCCccccccccccc
Q 019861           70 NVLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTY  108 (334)
Q Consensus        70 ~~l~CPiC~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~  108 (334)
                      +.+.||.|+........   .. ......++|+.|+++|
T Consensus         1 M~i~Cp~C~~~y~i~d~---~i-p~~g~~v~C~~C~~~f   35 (36)
T PF13717_consen    1 MIITCPNCQAKYEIDDE---KI-PPKGRKVRCSKCGHVF   35 (36)
T ss_pred             CEEECCCCCCEEeCCHH---HC-CCCCcEEECCCCCCEe
Confidence            35789999997655431   11 1233579999999876

>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases

Probab=94.54  E-value=0.16  Score=40.84  Aligned_cols=69  Identities=20%  Similarity=0.341  Sum_probs=45.7

Q ss_pred             eEEEEeCCHHHHHHHHHHHhcCC-----------------CCCCCCceEEEeCcc-cc-----CCCCH---HHHHHHHHH
Q 019861          203 LVVALDYSENMLKQCYEFVQQES-----------------NFPKDSIDAVHAGAA-IH-----CWSSP---STGVAEISR  256 (334)
Q Consensus       203 ~v~giD~s~~~~~~a~~~~~~~~-----------------~~~~~~fD~V~~~~v-l~-----h~~d~---~~~L~~i~r  256 (334)
                      +|+|+|+-+.+++..++++....                 -.+.+++|+|+.+.. |-     ....+   ..+|+.+.+
T Consensus         1 kVyaFDIQ~~Ai~~T~~rL~~~~~~~~v~li~~sHe~l~~~i~~~~v~~~iFNLGYLPggDk~i~T~~~TTl~Al~~al~   80 (140)
T PF06962_consen    1 KVYAFDIQEEAIENTRERLEEAGLEDRVTLILDSHENLDEYIPEGPVDAAIFNLGYLPGGDKSITTKPETTLKALEAALE   80 (140)
T ss_dssp             EEEEEES-HHHHHHHHHHHHHTT-GSGEEEEES-GGGGGGT--S--EEEEEEEESB-CTS-TTSB--HHHHHHHHHHHHH
T ss_pred             CEEEEECHHHHHHHHHHHHHhcCCCCcEEEEECCHHHHHhhCccCCcCEEEEECCcCCCCCCCCCcCcHHHHHHHHHHHH
Confidence            58999999999999999887653                 123358999887632 11     11223   368899999


Q ss_pred             cccCCcEEEEEEecc
Q 019861          257 VLRPGGVFVGTTYIV  271 (334)
Q Consensus       257 ~LkpgG~lii~~~~~  271 (334)
                      .|+|||.+.+.....
T Consensus        81 lL~~gG~i~iv~Y~G   95 (140)
T PF06962_consen   81 LLKPGGIITIVVYPG   95 (140)
T ss_dssp             HEEEEEEEEEEE--S
T ss_pred             hhccCCEEEEEEeCC
Confidence            999999998877654

; PDB: 3EEY_H 3LBY_A 3MTI_A.

>PRK00420 hypothetical protein; Validated

Probab=94.41  E-value=0.022  Score=43.70  Aligned_cols=30  Identities=27%  Similarity=0.500  Sum_probs=23.3

Q ss_pred             eeCCCCCCCccccCCCCcccccccCCcccccccccccccc
Q 019861           72 LACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSGV  111 (334)
Q Consensus        72 l~CPiC~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~~~~  111 (334)
                      -.||.||.++...-          .+..+|+.||..+...
T Consensus        24 ~~CP~Cg~pLf~lk----------~g~~~Cp~Cg~~~~v~   53 (112)
T PRK00420         24 KHCPVCGLPLFELK----------DGEVVCPVHGKVYIVK   53 (112)
T ss_pred             CCCCCCCCcceecC----------CCceECCCCCCeeeec
Confidence            57999999988622          1679999999877554

>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]

Probab=94.19  E-value=0.23  Score=46.78  Aligned_cols=100  Identities=24%  Similarity=0.261  Sum_probs=68.7

Q ss_pred             ccCCCCCCcEEEECCCcCHHHHHHHHc-CCCCeEEEEeCCHHHHHHHHHHHhcCC------------CCC----CCCceE
Q 019861          172 YLKPVLGGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQQES------------NFP----KDSIDA  234 (334)
Q Consensus       172 ~l~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~~v~giD~s~~~~~~a~~~~~~~~------------~~~----~~~fD~  234 (334)
                      .+.+.++.+|||+.+..|.=+.+++.. ...+.+++.|.+..-++....++...+            .|+    .++||-
T Consensus       236 aL~Pq~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlGv~ntiv~n~D~~ef~~~~~~~~fDR  315 (460)
T KOG1122|consen  236 ALDPQPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLGVTNTIVSNYDGREFPEKEFPGSFDR  315 (460)
T ss_pred             ecCCCCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHhCCCceEEEccCcccccccccCcccce
Confidence            346778999999999999655554443 223589999999998888887765432            122    127999


Q ss_pred             EEeC----c--cccC------CC---C-------HHHHHHHHHHcccCCcEEEEEEecc
Q 019861          235 VHAG----A--AIHC------WS---S-------PSTGVAEISRVLRPGGVFVGTTYIV  271 (334)
Q Consensus       235 V~~~----~--vl~h------~~---d-------~~~~L~~i~r~LkpgG~lii~~~~~  271 (334)
                      |+..    .  ++.-      +.   +       ..++|......+++||+|+-++=..
T Consensus       316 VLLDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLVYSTCSI  374 (460)
T KOG1122|consen  316 VLLDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLVYSTCSI  374 (460)
T ss_pred             eeecCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccCCcEEEEEeeec
Confidence            9853    2  2211      11   0       1367788889999999999887665

>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional

Probab=94.10  E-value=0.28  Score=48.20  Aligned_cols=94  Identities=22%  Similarity=0.221  Sum_probs=66.3

Q ss_pred             CCCCCcEEEECCCc-CHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCC--------------------C-------
Q 019861          175 PVLGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES--------------------N-------  226 (334)
Q Consensus       175 ~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~--------------------~-------  226 (334)
                      ..++.+|+=+|+|. |..+...++.. .+.|+++|.+++.++.+++.-....                    .       
T Consensus       162 ~~pg~kVlViGaG~iGL~Ai~~Ak~l-GA~V~a~D~~~~rle~aeslGA~~v~i~~~e~~~~~~gya~~~s~~~~~~~~~  240 (509)
T PRK09424        162 KVPPAKVLVIGAGVAGLAAIGAAGSL-GAIVRAFDTRPEVAEQVESMGAEFLELDFEEEGGSGDGYAKVMSEEFIKAEMA  240 (509)
T ss_pred             CcCCCEEEEECCcHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHcCCeEEEeccccccccccchhhhcchhHHHHHHH
Confidence            45689999999998 55555555442 3489999999999998886311100                    0       


Q ss_pred             -CCC--CCceEEEeCccccCCCCHHHHHHHHHHcccCCcEEEEEEe
Q 019861          227 -FPK--DSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTY  269 (334)
Q Consensus       227 -~~~--~~fD~V~~~~vl~h~~d~~~~L~~i~r~LkpgG~lii~~~  269 (334)
                       +.+  +.+|+|+.......-+.|..+.++..+.+||||+++....
T Consensus       241 ~~~~~~~gaDVVIetag~pg~~aP~lit~~~v~~mkpGgvIVdvg~  286 (509)
T PRK09424        241 LFAEQAKEVDIIITTALIPGKPAPKLITAEMVASMKPGSVIVDLAA  286 (509)
T ss_pred             HHHhccCCCCEEEECCCCCcccCcchHHHHHHHhcCCCCEEEEEcc
Confidence             001  3589999887765555676667999999999999877554

>KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=94.04  E-value=0.036  Score=47.82  Aligned_cols=95  Identities=20%  Similarity=0.282  Sum_probs=60.5

Q ss_pred             CCcEEEECCCcCHHHHHHHHcCCC---------CeEEEEeCCHHHHHHHHHHHhcC-----------CCCCCCCceEEEe
Q 019861          178 GGNIIDASCGSGLFSRIFAKSGLF---------SLVVALDYSENMLKQCYEFVQQE-----------SNFPKDSIDAVHA  237 (334)
Q Consensus       178 ~~~vLDiGcG~G~~~~~l~~~~~~---------~~v~giD~s~~~~~~a~~~~~~~-----------~~~~~~~fD~V~~  237 (334)
                      -.+++|+....|.|+..|.++...         ..++++|+-+..--..--.++.+           ..|...+.|+|+|
T Consensus        42 v~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~MaPI~GV~qlq~DIT~~stae~Ii~hfggekAdlVvc  121 (294)
T KOG1099|consen   42 VKRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPMAPIEGVIQLQGDITSASTAEAIIEHFGGEKADLVVC  121 (294)
T ss_pred             hhHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEecccCCccCceEEeecccCCHhHHHHHHHHhCCCCccEEEe
Confidence            368999999999999999876211         13899997552110000000000           0244568999999


Q ss_pred             Ccc-----ccCCCCH------HHHHHHHHHcccCCcEEEEEEeccC
Q 019861          238 GAA-----IHCWSSP------STGVAEISRVLRPGGVFVGTTYIVD  272 (334)
Q Consensus       238 ~~v-----l~h~~d~------~~~L~~i~r~LkpgG~lii~~~~~~  272 (334)
                      ...     ||.+.+.      .++|.-...+|+|||.++.-.+-..
T Consensus       122 DGAPDvTGlHd~DEy~Q~qLllaAl~i~t~Vlk~Gg~FVaKifRg~  167 (294)
T KOG1099|consen  122 DGAPDVTGLHDLDEYVQAQLLLAALNIATCVLKPGGSFVAKIFRGR  167 (294)
T ss_pred             CCCCCccccccHHHHHHHHHHHHHHHHHhheecCCCeeehhhhccC
Confidence            754     5544432      2567777889999999998666543

>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=93.99  E-value=0.53  Score=43.03  Aligned_cols=94  Identities=19%  Similarity=0.178  Sum_probs=66.9

Q ss_pred             ccCCCCCCcEEEECCCc-CHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCC-------------------CCCCCC
Q 019861          172 YLKPVLGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES-------------------NFPKDS  231 (334)
Q Consensus       172 ~l~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~-------------------~~~~~~  231 (334)
                      ...-.++.+||-+|+|. |..+...++..--.+|+.+|+++..++.|++ +....                   .+.+..
T Consensus       164 ~~~vk~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~-~Ga~~~~~~~~~~~~~~~~~~v~~~~g~~~  242 (354)
T KOG0024|consen  164 RAGVKKGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKK-FGATVTDPSSHKSSPQELAELVEKALGKKQ  242 (354)
T ss_pred             hcCcccCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHH-hCCeEEeeccccccHHHHHHHHHhhccccC
Confidence            33455689999999997 6555555665435799999999999999998 33211                   122345


Q ss_pred             ceEEEeCccccCCCCHHHHHHHHHHcccCCcEEEEEEeccC
Q 019861          232 IDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVD  272 (334)
Q Consensus       232 fD~V~~~~vl~h~~d~~~~L~~i~r~LkpgG~lii~~~~~~  272 (334)
                      +|+.+-...++      ..++.....++.||.+++......
T Consensus       243 ~d~~~dCsG~~------~~~~aai~a~r~gGt~vlvg~g~~  277 (354)
T KOG0024|consen  243 PDVTFDCSGAE------VTIRAAIKATRSGGTVVLVGMGAE  277 (354)
T ss_pred             CCeEEEccCch------HHHHHHHHHhccCCEEEEeccCCC
Confidence            88888765544      346677889999999888776554

>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised

Probab=93.96  E-value=2.3  Score=37.36  Aligned_cols=90  Identities=16%  Similarity=0.088  Sum_probs=50.6

Q ss_pred             CCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCC------------CCC---CCCceEEEeCccc
Q 019861          177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES------------NFP---KDSIDAVHAGAAI  241 (334)
Q Consensus       177 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~------------~~~---~~~fD~V~~~~vl  241 (334)
                      .|++||-+|=..- .+.+++-.+...+++.+|+++..++..++.....+            ++|   .++||+++..=. 
T Consensus        44 ~gk~il~lGDDDL-tSlA~al~~~~~~I~VvDiDeRll~fI~~~a~~~gl~i~~~~~DlR~~LP~~~~~~fD~f~TDPP-  121 (243)
T PF01861_consen   44 EGKRILFLGDDDL-TSLALALTGLPKRITVVDIDERLLDFINRVAEEEGLPIEAVHYDLRDPLPEELRGKFDVFFTDPP-  121 (243)
T ss_dssp             TT-EEEEES-TT--HHHHHHHHT--SEEEEE-S-HHHHHHHHHHHHHHT--EEEE---TTS---TTTSS-BSEEEE----
T ss_pred             cCCEEEEEcCCcH-HHHHHHhhCCCCeEEEEEcCHHHHHHHHHHHHHcCCceEEEEecccccCCHHHhcCCCEEEeCCC-
Confidence            5789999995543 33444444555799999999999998887654322            444   479999987421 


Q ss_pred             cCCCCHHHHHHHHHHcccCCc-EEEEEE
Q 019861          242 HCWSSPSTGVAEISRVLRPGG-VFVGTT  268 (334)
Q Consensus       242 ~h~~d~~~~L~~i~r~LkpgG-~lii~~  268 (334)
                      +-..-...++......||..| ..++..
T Consensus       122 yT~~G~~LFlsRgi~~Lk~~g~~gy~~~  149 (243)
T PF01861_consen  122 YTPEGLKLFLSRGIEALKGEGCAGYFGF  149 (243)
T ss_dssp             SSHHHHHHHHHHHHHTB-STT-EEEEEE
T ss_pred             CCHHHHHHHHHHHHHHhCCCCceEEEEE
Confidence            000122468888899998766 544433

All the members are 350-400 amino acids long.; PDB: 2QM3_A.

>TIGR02098 MJ0042_CXXC MJ0042 family finger-like domain

Probab=93.87  E-value=0.031  Score=34.05  Aligned_cols=35  Identities=20%  Similarity=0.675  Sum_probs=22.6

Q ss_pred             ceeCCCCCCCccccCCCCcccccccCCcccccccccccc
Q 019861           71 VLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYS  109 (334)
Q Consensus        71 ~l~CPiC~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~~  109 (334)
                      .+.||.|+........   .. ......++|++||..+.
T Consensus         2 ~~~CP~C~~~~~v~~~---~~-~~~~~~v~C~~C~~~~~   36 (38)
T TIGR02098         2 RIQCPNCKTSFRVVDS---QL-GANGGKVRCGKCGHVWY   36 (38)
T ss_pred             EEECCCCCCEEEeCHH---Hc-CCCCCEEECCCCCCEEE
Confidence            5789999997654331   01 11223699999998763

This domain contains a CXXCX(19)CXXC motif suggestive of both zinc fingers and thioredoxin, usually found at the N-terminus of prokaryotic proteins. One partially characterized gene, agmX, is among a large set in Myxococcus whose interruption affects adventurous gliding motility.

>PF14803 Nudix_N_2: Nudix N-terminal; PDB: 3CNG_C

Probab=93.77  E-value=0.029  Score=33.29  Aligned_cols=30  Identities=27%  Similarity=0.478  Sum_probs=16.2

Q ss_pred             CCCCCCCccccCCCCcccccccCCccccccccccc
Q 019861           74 CPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTY  108 (334)
Q Consensus        74 CPiC~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~  108 (334)
                      ||.||.++......+     +...-+.|+.||.+.
T Consensus         3 C~~CG~~l~~~ip~g-----d~r~R~vC~~Cg~Ih   32 (34)
T PF14803_consen    3 CPQCGGPLERRIPEG-----DDRERLVCPACGFIH   32 (34)
T ss_dssp             -TTT--B-EEE--TT------SS-EEEETTTTEEE
T ss_pred             cccccChhhhhcCCC-----CCccceECCCCCCEE
Confidence            999999986654311     134679999999764

>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]

Probab=93.74  E-value=0.19  Score=43.87  Aligned_cols=92  Identities=16%  Similarity=0.172  Sum_probs=61.5

Q ss_pred             CCCCCCcEEEECCCcCHHHHHHHHc-CCCCeEEEEeCCHHH----HHHHHHHHhcCCCCC-----------CCCceEEEe
Q 019861          174 KPVLGGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENM----LKQCYEFVQQESNFP-----------KDSIDAVHA  237 (334)
Q Consensus       174 ~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~~v~giD~s~~~----~~~a~~~~~~~~~~~-----------~~~fD~V~~  237 (334)
                      ...++.+||-+|+++|.......+- +|..-|+++|+|...    +..|+++..-....+           -+-.|+|++
T Consensus       153 hikpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAkkRtNiiPIiEDArhP~KYRmlVgmVDvIFa  232 (317)
T KOG1596|consen  153 HIKPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAKKRTNIIPIIEDARHPAKYRMLVGMVDVIFA  232 (317)
T ss_pred             eecCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhhccCCceeeeccCCCchheeeeeeeEEEEec
Confidence            4567999999999999998888886 777889999999853    444444322111111           134677665


Q ss_pred             CccccCCCCHH---HHHHHHHHcccCCcEEEEEEec
Q 019861          238 GAAIHCWSSPS---TGVAEISRVLRPGGVFVGTTYI  270 (334)
Q Consensus       238 ~~vl~h~~d~~---~~L~~i~r~LkpgG~lii~~~~  270 (334)
                      .     +..|.   .+.-+..-.||+||.++++.-.
T Consensus       233 D-----vaqpdq~RivaLNA~~FLk~gGhfvisika  263 (317)
T KOG1596|consen  233 D-----VAQPDQARIVALNAQYFLKNGGHFVISIKA  263 (317)
T ss_pred             c-----CCCchhhhhhhhhhhhhhccCCeEEEEEec
Confidence            4     33343   2344567789999998886654

>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []

Probab=93.69  E-value=0.24  Score=42.47  Aligned_cols=94  Identities=16%  Similarity=0.153  Sum_probs=47.4

Q ss_pred             CCCcEEEECCCcCHHHHHHHHc----CCCCeEEEEeCCHHHHHH-HHHH---------HhcCC----------CC-CCCC
Q 019861          177 LGGNIIDASCGSGLFSRIFAKS----GLFSLVVALDYSENMLKQ-CYEF---------VQQES----------NF-PKDS  231 (334)
Q Consensus       177 ~~~~vLDiGcG~G~~~~~l~~~----~~~~~v~giD~s~~~~~~-a~~~---------~~~~~----------~~-~~~~  231 (334)
                      ++..|+|+|.-.|..+..++..    +..++|+|+|++...... +.+.         +++..          .. ....
T Consensus        32 kPd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~~a~e~hp~~~rI~~i~Gds~d~~~~~~v~~~~~~~~  111 (206)
T PF04989_consen   32 KPDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNRKAIESHPMSPRITFIQGDSIDPEIVDQVRELASPPH  111 (206)
T ss_dssp             --SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S-GGGG----TTEEEEES-SSSTHHHHTSGSS----S
T ss_pred             CCCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhchHHHhhccccCceEEEECCCCCHHHHHHHHHhhccCC
Confidence            3579999999999877666542    456799999996543321 1111         00000          01 1223


Q ss_pred             ceEEEeCccccCCCCHHHHHHHHHHcccCCcEEEEEEecc
Q 019861          232 IDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIV  271 (334)
Q Consensus       232 fD~V~~~~vl~h~~d~~~~L~~i~r~LkpgG~lii~~~~~  271 (334)
                      ..+|+.. +-|...+..+.|+.....+++|+++++.+...
T Consensus       112 ~vlVilD-s~H~~~hvl~eL~~y~plv~~G~Y~IVeDt~~  150 (206)
T PF04989_consen  112 PVLVILD-SSHTHEHVLAELEAYAPLVSPGSYLIVEDTII  150 (206)
T ss_dssp             SEEEEES-S----SSHHHHHHHHHHT--TT-EEEETSHHH
T ss_pred             ceEEEEC-CCccHHHHHHHHHHhCccCCCCCEEEEEeccc
Confidence            4455543 33334466788999999999999999976654

Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.

>PHA01634 hypothetical protein

Probab=93.57  E-value=0.21  Score=39.20  Aligned_cols=46  Identities=22%  Similarity=0.192  Sum_probs=40.3

Q ss_pred             CCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhc
Q 019861          177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQ  223 (334)
Q Consensus       177 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~  223 (334)
                      .+++|+|||.+-|..+..++-.|. ..|+++++++...+..++....
T Consensus        28 k~KtV~dIGA~iGdSaiYF~l~GA-K~Vva~E~~~kl~k~~een~k~   73 (156)
T PHA01634         28 YQRTIQIVGADCGSSALYFLLRGA-SFVVQYEKEEKLRKKWEEVCAY   73 (156)
T ss_pred             cCCEEEEecCCccchhhHHhhcCc-cEEEEeccCHHHHHHHHHHhhh
Confidence            578999999999999999998884 6899999999999998886553

>PF05430 Methyltransf_30: S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR008471 This entry contains several uncharacterised bacterial proteins with no known function

Probab=93.56  E-value=0.24  Score=39.07  Aligned_cols=71  Identities=21%  Similarity=0.247  Sum_probs=49.5

Q ss_pred             CCceEEEeCccccCCCCH----HHHHHHHHHcccCCcEEEEEEeccCCCCCchHHHHHHHHHhhhhcCccCCCCHHHHHH
Q 019861          230 DSIDAVHAGAAIHCWSSP----STGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIED  305 (334)
Q Consensus       230 ~~fD~V~~~~vl~h~~d~----~~~L~~i~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~l~~  305 (334)
                      ..+|+|+.... ---.||    ..++++++++++|||.+...+                              ....+++
T Consensus        49 ~~~Da~ylDgF-sP~~nPelWs~e~~~~l~~~~~~~~~l~Tys------------------------------~a~~Vr~   97 (124)
T PF05430_consen   49 ARFDAWYLDGF-SPAKNPELWSEELFKKLARLSKPGGTLATYS------------------------------SAGAVRR   97 (124)
T ss_dssp             T-EEEEEE-SS--TTTSGGGSSHHHHHHHHHHEEEEEEEEES--------------------------------BHHHHH
T ss_pred             ccCCEEEecCC-CCcCCcccCCHHHHHHHHHHhCCCcEEEEee------------------------------chHHHHH
Confidence            56888887642 222355    479999999999999776521                              2346899


Q ss_pred             HHHhCCCcEEEEe-ecCcEEEEEEEcC
Q 019861          306 LCRACGLVDFKCT-RNRGFVMFTATKP  331 (334)
Q Consensus       306 ll~~~Gf~~v~~~-~~g~~~~~~a~K~  331 (334)
                      .|.++||.+.+.- .++.--|++|.||
T Consensus        98 ~L~~aGF~v~~~~g~g~Kr~~~~a~~~  124 (124)
T PF05430_consen   98 ALQQAGFEVEKVPGFGRKREMLRAVKP  124 (124)
T ss_dssp             HHHHCTEEEEEEE-STTSSEEEEEEC-
T ss_pred             HHHHcCCEEEEcCCCCCcchheEEEcC
Confidence            9999999987754 4567788888875

; GO: 0016645 oxidoreductase activity, acting on the CH-NH group of donors, 0055114 oxidation-reduction process; PDB: 2E58_D 3SGL_A 3PVC_A 3AWI_D 3PS9_A 2QY6_A.

>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]

Probab=93.47  E-value=0.22  Score=44.78  Aligned_cols=89  Identities=13%  Similarity=0.209  Sum_probs=67.6

Q ss_pred             CCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCC--------------------CCCCCCceEEE
Q 019861          177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES--------------------NFPKDSIDAVH  236 (334)
Q Consensus       177 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~--------------------~~~~~~fD~V~  236 (334)
                      ..+++|-||.|.|..++.....-...++.-+|++...++..++.+....                    ....++||+|+
T Consensus       121 npkkvlVVgggDggvlrevikH~~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~~~~~~dVii  200 (337)
T KOG1562|consen  121 NPKKVLVVGGGDGGVLREVIKHKSVENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDLKENPFDVII  200 (337)
T ss_pred             CCCeEEEEecCCccceeeeeccccccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHHHHhccCCceEEE
Confidence            4679999999999999888877434578889999999988887655321                    24478999998


Q ss_pred             eCccccCCCCH---------HHHHHHHHHcccCCcEEEEEEec
Q 019861          237 AGAAIHCWSSP---------STGVAEISRVLRPGGVFVGTTYI  270 (334)
Q Consensus       237 ~~~vl~h~~d~---------~~~L~~i~r~LkpgG~lii~~~~  270 (334)
                      .--     .||         ......+.+.||+||+++...-+
T Consensus       201 ~ds-----sdpvgpa~~lf~~~~~~~v~~aLk~dgv~~~q~ec  238 (337)
T KOG1562|consen  201 TDS-----SDPVGPACALFQKPYFGLVLDALKGDGVVCTQGEC  238 (337)
T ss_pred             Eec-----CCccchHHHHHHHHHHHHHHHhhCCCcEEEEecce
Confidence            753     233         35678899999999999886543

>KOG2920 consensus Predicted methyltransferase [General function prediction only]

Probab=93.43  E-value=0.069  Score=47.73  Aligned_cols=89  Identities=18%  Similarity=0.263  Sum_probs=57.5

Q ss_pred             CCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHH-------HHh----cCC---C----------C-CCC-
Q 019861          177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYE-------FVQ----QES---N----------F-PKD-  230 (334)
Q Consensus       177 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~-------~~~----~~~---~----------~-~~~-  230 (334)
                      .+++|||+|||.|.....+...+. ..+...|++...++...-       ...    +..   +          + -.+ 
T Consensus       116 ~~k~vLELgCg~~Lp~i~~~~~~~-~~~~fqD~na~vl~~~t~pn~~~~~~~~~~~~e~~~~~~i~~s~l~dg~~~~t~~  194 (282)
T KOG2920|consen  116 SGKRVLELGCGAALPGIFAFVKGA-VSVHFQDFNAEVLRLVTLPNILVNSHAGVEEKENHKVDEILNSLLSDGVFNHTER  194 (282)
T ss_pred             cCceeEecCCcccccchhhhhhcc-ceeeeEecchhheeeecccceecchhhhhhhhhcccceeccccccccchhhhccc
Confidence            478999999999988888877762 588888988877732110       000    000   0          0 012 


Q ss_pred             -CceEEEeCccccCCCCHHHH-HHHHHHcccCCcEEEE
Q 019861          231 -SIDAVHAGAAIHCWSSPSTG-VAEISRVLRPGGVFVG  266 (334)
Q Consensus       231 -~fD~V~~~~vl~h~~d~~~~-L~~i~r~LkpgG~lii  266 (334)
                       .||+|.++..+....+...+ +......++++|+++.
T Consensus       195 ~~ydlIlsSetiy~~~~~~~~~~~~r~~l~~~D~~~~~  232 (282)
T KOG2920|consen  195 THYDLILSSETIYSIDSLAVLYLLHRPCLLKTDGVFYV  232 (282)
T ss_pred             cchhhhhhhhhhhCcchhhhhHhhhhhhcCCccchhhh
Confidence             68888888777665544444 5566667788887665

>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]

Probab=93.39  E-value=0.64  Score=42.09  Aligned_cols=60  Identities=18%  Similarity=0.189  Sum_probs=50.8

Q ss_pred             HHHHHHHcccCCCCCCcEEEECCCcCHHHHHHHHcCCC-CeEEEEeCCHHHHHHHHHHHhc
Q 019861          164 KEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLF-SLVVALDYSENMLKQCYEFVQQ  223 (334)
Q Consensus       164 ~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~-~~v~giD~s~~~~~~a~~~~~~  223 (334)
                      -+.+.....+.+.+++..||.--|.|..+..+.+.++. ++++|+|.++.+++.|++.+..
T Consensus        10 VLl~E~i~~L~~~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~   70 (314)
T COG0275          10 VLLNEVVELLAPKPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKE   70 (314)
T ss_pred             hHHHHHHHhcccCCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhc
Confidence            34456667778888899999999999999999998753 5699999999999999998764

>PF03514 GRAS: GRAS domain family; InterPro: IPR005202 Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable N terminus and a highly conserved C terminus that contains five recognizable motifs []

Probab=93.30  E-value=2.8  Score=39.71  Aligned_cols=103  Identities=17%  Similarity=0.110  Sum_probs=61.5

Q ss_pred             HHHHcccCCCCCCcEEEECCCcCHH----HHHHHHc--C-CCCeEEEEeC----CHHHHHHHHHHHhcCC----------
Q 019861          167 ELMKGYLKPVLGGNIIDASCGSGLF----SRIFAKS--G-LFSLVVALDY----SENMLKQCYEFVQQES----------  225 (334)
Q Consensus       167 ~~l~~~l~~~~~~~vLDiGcG~G~~----~~~l~~~--~-~~~~v~giD~----s~~~~~~a~~~~~~~~----------  225 (334)
                      ..|++.+.....-+|+|+|-|.|.-    ...|+.+  + |..+++||+.    +...++.+.+++....          
T Consensus       100 qaIleA~~g~~~vHIID~~i~~G~QW~~LiqaLa~R~~gpp~LrIT~i~~~~~~~~~~l~~~g~rL~~fA~~lgv~fef~  179 (374)
T PF03514_consen  100 QAILEAFEGERRVHIIDFGIGFGVQWPSLIQALASRPGGPPSLRITGIGPPNSGSADELQETGRRLAEFARSLGVPFEFH  179 (374)
T ss_pred             HHHHHHhccCcceEEEeccCCcchHHHHHHHHHhcCCCCCCeEEEEeccCCCCCcHHHHHHHHHHHHHHHHHcCccEEEE
Confidence            3555556555667999999999954    4444443  2 4568999999    7777777666543211          


Q ss_pred             ---------------CCCCCCceEEEeCccccCCCC-------HH-HHHHHHHHcccCCcEEEEEEecc
Q 019861          226 ---------------NFPKDSIDAVHAGAAIHCWSS-------PS-TGVAEISRVLRPGGVFVGTTYIV  271 (334)
Q Consensus       226 ---------------~~~~~~fD~V~~~~vl~h~~d-------~~-~~L~~i~r~LkpgG~lii~~~~~  271 (334)
                                     ...++..=+|-+...|||+.+       |. .+|+.+ +.|+|.-++ +.+...
T Consensus       180 ~v~~~~~e~l~~~~l~~~~~E~laVn~~~~Lh~l~~~~~~~~~~~~~~L~~i-r~L~P~vvv-~~E~ea  246 (374)
T PF03514_consen  180 PVVVESLEDLDPSMLRLRPGEALAVNCMFQLHHLLDESGALENPRDAFLRVI-RSLNPKVVV-LVEQEA  246 (374)
T ss_pred             ecccCchhhCCHHHhCccCCcEEEEEeehhhhhhccccccccchHHHHHHHH-HhcCCCEEE-EEeecC
Confidence                           112333334445666888862       33 355544 468997544 444444

Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction []. GRAS proteins contain a conserved region of about 350 amino acids that can be divided in 5 motifs, found in the following order: leucine heptad repeat I, the VHIID motif, leucine heptad repeat II, the PFYRE motif and the SAW motif [, ]. Plant specific GRAS proteins have parallels in their motif structure to the animal Signal Transducers and Activators of Transcription (STAT) family of proteins [] which suggests also some parallels in their functions.

>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines

Probab=93.17  E-value=0.059  Score=29.91  Aligned_cols=24  Identities=25%  Similarity=0.607  Sum_probs=18.5

Q ss_pred             eCCCCCCCccccCCCCcccccccCCcccccccccccc
Q 019861           73 ACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYS  109 (334)
Q Consensus        73 ~CPiC~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~~  109 (334)
                      .||.|+.....             ....|+.||+.|.
T Consensus         2 ~CP~C~~~V~~-------------~~~~Cp~CG~~F~   25 (26)
T PF10571_consen    2 TCPECGAEVPE-------------SAKFCPHCGYDFE   25 (26)
T ss_pred             cCCCCcCCchh-------------hcCcCCCCCCCCc
Confidence            59999997543             4578999998764

Several members are annotated as putative helicases.

>TIGR01206 lysW lysine biosynthesis protein LysW

Probab=92.87  E-value=0.064  Score=35.47  Aligned_cols=33  Identities=18%  Similarity=0.429  Sum_probs=23.7

Q ss_pred             ceeCCCCCCCccccCCCCcccccccCCccccccccccccc
Q 019861           71 VLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSG  110 (334)
Q Consensus        71 ~l~CPiC~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~~~  110 (334)
                      ++.||.||..+.....  .     ...++.|+.||..+-.
T Consensus         2 ~~~CP~CG~~iev~~~--~-----~GeiV~Cp~CGaeleV   34 (54)
T TIGR01206         2 QFECPDCGAEIELENP--E-----LGELVICDECGAELEV   34 (54)
T ss_pred             ccCCCCCCCEEecCCC--c-----cCCEEeCCCCCCEEEE
Confidence            4689999998765431  1     1358899999986644

This very small, poorly characterized protein has been shown essential in Thermus thermophilus for an unusual pathway of Lys biosynthesis from aspartate by way of alpha-aminoadipate (AAA) rather than diaminopimelate. It is found also in Deinococcus radiodurans and Pyrococcus horikoshii, which appear to share the AAA pathway.

>COG1997 RPL43A Ribosomal protein L37AE/L43A [Translation, ribosomal structure and biogenesis]

Probab=92.73  E-value=0.061  Score=38.80  Aligned_cols=32  Identities=22%  Similarity=0.533  Sum_probs=23.5

Q ss_pred             ceeCCCCCCCccccCCCCcccccccCCcccccccccccccc
Q 019861           71 VLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSGV  111 (334)
Q Consensus        71 ~l~CPiC~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~~~~  111 (334)
                      ...||.|+.+-...         +..++|+|..||..+...
T Consensus        35 ~~~Cp~C~~~~VkR---------~a~GIW~C~kCg~~fAGg   66 (89)
T COG1997          35 KHVCPFCGRTTVKR---------IATGIWKCRKCGAKFAGG   66 (89)
T ss_pred             CCcCCCCCCcceee---------eccCeEEcCCCCCeeccc
Confidence            47899999973322         245899999999877443

>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function

Probab=92.60  E-value=0.31  Score=43.43  Aligned_cols=46  Identities=13%  Similarity=0.072  Sum_probs=35.1

Q ss_pred             CCcEEEECCCcCHHHHHHHHcC--------CCCeEEEEeCCHHHHHHHHHHHhc
Q 019861          178 GGNIIDASCGSGLFSRIFAKSG--------LFSLVVALDYSENMLKQCYEFVQQ  223 (334)
Q Consensus       178 ~~~vLDiGcG~G~~~~~l~~~~--------~~~~v~giD~s~~~~~~a~~~~~~  223 (334)
                      ..+|+|+|+|.|.++..+.+..        ...+++-+|+|+.+.+.-++++..
T Consensus        19 ~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~~~Q~~~L~~   72 (252)
T PF02636_consen   19 PLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLRERQKERLSE   72 (252)
T ss_dssp             -EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCHHHHHHHCCC
T ss_pred             CcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHHHHHHHHhhh
Confidence            4699999999999988876642        135899999999998888887665

; PDB: 4F3N_A 1ZKD_B.

>PRK09678 DNA-binding transcriptional regulator; Provisional

Probab=92.59  E-value=0.072  Score=37.46  Aligned_cols=49  Identities=14%  Similarity=0.324  Sum_probs=32.5

Q ss_pred             ceeCCCCCCCccccCCCCcccccccCCccccc--ccccccccccCccccccc
Q 019861           71 VLACPICYKPLTWIGDSSLSIESAAGSSLQCN--TCKKTYSGVGTHFDMTAA  120 (334)
Q Consensus        71 ~l~CPiC~~~l~~~~~~~~~~~~~~~~~~~C~--~C~~~~~~~~~~~~~~~~  120 (334)
                      ++.||.||...........+. .....+.+|.  +||+.|.....+...+..
T Consensus         1 mm~CP~Cg~~a~irtSr~~s~-~~~~~Y~qC~N~eCg~tF~t~es~s~tis~   51 (72)
T PRK09678          1 MFHCPLCQHAAHARTSRYITD-TTKERYHQCQNVNCSATFITYESVQRYIVK   51 (72)
T ss_pred             CccCCCCCCccEEEEChhcCh-hhheeeeecCCCCCCCEEEEEEEEEEEEcC
Confidence            468999999763332222222 2455799999  999999887666555443

>KOG1098 consensus Putative SAM-dependent rRNA methyltransferase SPB1 [RNA processing and modification; General function prediction only]

Probab=92.23  E-value=1.4  Score=43.55  Aligned_cols=101  Identities=19%  Similarity=0.184  Sum_probs=58.6

Q ss_pred             HHHcccCCCCCCcEEEECCCcCHHHHHHHHcCC-CCeEEEEeCCHH-----HH--------HHHHHHHhcCCCCCCCCce
Q 019861          168 LMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGL-FSLVVALDYSEN-----ML--------KQCYEFVQQESNFPKDSID  233 (334)
Q Consensus       168 ~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~-~~~v~giD~s~~-----~~--------~~a~~~~~~~~~~~~~~fD  233 (334)
                      +-..|--..++..|||+||..|.|+..+.+.-| .+.|+|+|+-+-     ..        +.++..+...  ...-..|
T Consensus        35 ln~ky~fl~~a~~vlDLcaAPG~W~QVA~q~~pv~slivGvDl~pikp~~~c~t~v~dIttd~cr~~l~k~--l~t~~ad  112 (780)
T KOG1098|consen   35 LNKKYKFLEKAHVVLDLCAAPGGWLQVASQSMPVGSLIVGVDLVPIKPIPNCDTLVEDITTDECRSKLRKI--LKTWKAD  112 (780)
T ss_pred             HHHHhccccccchheeeccCCcHHHHHHHHhCCCCceEEEeeeeecccCCccchhhhhhhHHHHHHHHHHH--HHhCCCc
Confidence            333343345578999999999999999988744 457899998762     11        1111111111  1122348


Q ss_pred             EEEeCccc----cCCCCH-------HHHHHHHHHcccCCcEEEEEEec
Q 019861          234 AVHAGAAI----HCWSSP-------STGVAEISRVLRPGGVFVGTTYI  270 (334)
Q Consensus       234 ~V~~~~vl----~h~~d~-------~~~L~~i~r~LkpgG~lii~~~~  270 (334)
                      +|+....-    .+..|-       ..+|+-....|+.||.++--.+-
T Consensus       113 vVLhDgapnVg~~w~~DA~~q~~L~l~al~LA~~~l~~~g~fvtkvfr  160 (780)
T KOG1098|consen  113 VVLHDGAPNVGGNWVQDAFQQACLTLRALKLATEFLAKGGTFVTKVFR  160 (780)
T ss_pred             EEeecCCCccchhHHHHHHHhhHHHHHHHHHHHHHHHhcCcccccccc
Confidence            88765431    111111       24566677888999995554443

>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes

Probab=92.19  E-value=0.42  Score=41.07  Aligned_cols=55  Identities=22%  Similarity=0.242  Sum_probs=37.4

Q ss_pred             HHHcccCCCCCCcEEEECCCcCHHHHHHHHcCC--CCeEEEEeCCHHHHHHHHHHHh
Q 019861          168 LMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGL--FSLVVALDYSENMLKQCYEFVQ  222 (334)
Q Consensus       168 ~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~--~~~v~giD~s~~~~~~a~~~~~  222 (334)
                      .-..++....+-++.|-.||.|+++-.+.-...  -..++|.|+++.+++.|++++.
T Consensus        42 R~l~~l~~~~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL~   98 (246)
T PF11599_consen   42 RALHYLEGKGPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNLS   98 (246)
T ss_dssp             HHHCTSSS-S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHHH
T ss_pred             HHHHhhcCCCCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhhh
Confidence            334455444567999999999998766543321  2379999999999999998754

This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.

>COG2888 Predicted Zn-ribbon RNA-binding protein with a function in translation [Translation, ribosomal structure and biogenesis]

Probab=92.11  E-value=0.072  Score=35.45  Aligned_cols=38  Identities=16%  Similarity=0.364  Sum_probs=23.8

Q ss_pred             ccCCCceeCCCCCCCccccCCCCcccccccCCcccccccccc
Q 019861           66 STSKNVLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKT  107 (334)
Q Consensus        66 ~~~~~~l~CPiC~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~  107 (334)
                      ..+.-.+.||.||.........    -......++|++||+.
T Consensus        22 ~e~~v~F~CPnCGe~~I~Rc~~----CRk~g~~Y~Cp~CGF~   59 (61)
T COG2888          22 GETAVKFPCPNCGEVEIYRCAK----CRKLGNPYRCPKCGFE   59 (61)
T ss_pred             CCceeEeeCCCCCceeeehhhh----HHHcCCceECCCcCcc
Confidence            4455679999999765443211    0112357899999864

>PHA00626 hypothetical protein

Probab=92.10  E-value=0.087  Score=34.56  Aligned_cols=33  Identities=18%  Similarity=0.268  Sum_probs=21.5

Q ss_pred             eCCCCCCCc-cccCCCCcccccccCCccccccccccccc
Q 019861           73 ACPICYKPL-TWIGDSSLSIESAAGSSLQCNTCKKTYSG  110 (334)
Q Consensus        73 ~CPiC~~~l-~~~~~~~~~~~~~~~~~~~C~~C~~~~~~  110 (334)
                      .||.||+.. .....-.     ...+.+.|+.||..|..
T Consensus         2 ~CP~CGS~~Ivrcg~cr-----~~snrYkCkdCGY~ft~   35 (59)
T PHA00626          2 SCPKCGSGNIAKEKTMR-----GWSDDYVCCDCGYNDSK   35 (59)
T ss_pred             CCCCCCCceeeeeceec-----ccCcceEcCCCCCeech
Confidence            699999953 3322100     02367999999988855

>PF08274 PhnA_Zn_Ribbon: PhnA Zinc-Ribbon ; InterPro: IPR013987 The PhnA protein family includes the uncharacterised Escherichia coli protein PhnA and its homologues

Probab=92.09  E-value=0.07  Score=30.67  Aligned_cols=26  Identities=31%  Similarity=0.837  Sum_probs=14.2

Q ss_pred             eCCCCCCCccccCCCCcccccccCCccccccccccc
Q 019861           73 ACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTY  108 (334)
Q Consensus        73 ~CPiC~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~  108 (334)
                      .||.|++......          ...+.|+.|++.+
T Consensus         4 ~Cp~C~se~~y~D----------~~~~vCp~C~~ew   29 (30)
T PF08274_consen    4 KCPLCGSEYTYED----------GELLVCPECGHEW   29 (30)
T ss_dssp             --TTT-----EE-----------SSSEEETTTTEEE
T ss_pred             CCCCCCCcceecc----------CCEEeCCcccccC
Confidence            6999999765532          2689999999764

The E. coli phnA gene is part of a large operon associated with alkylphosphonate uptake and carbon-phosphorus bond cleavage []. The protein is not related to the characterised phosphonoacetate hydrolase designated PhnA []. This entry represents the N-terminal domain of PhnA, which is predicted to form a zinc-ribbon.; PDB: 2AKL_A.

>PF08271 TF_Zn_Ribbon: TFIIB zinc-binding; InterPro: IPR013137 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=92.09  E-value=0.083  Score=33.19  Aligned_cols=30  Identities=20%  Similarity=0.476  Sum_probs=19.8

Q ss_pred             eeCCCCCCCccccCCCCcccccccCCcccccccccccc
Q 019861           72 LACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYS  109 (334)
Q Consensus        72 l~CPiC~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~~  109 (334)
                      +.||.|++......        ...+.+.|+.||.+..
T Consensus         1 m~Cp~Cg~~~~~~D--------~~~g~~vC~~CG~Vl~   30 (43)
T PF08271_consen    1 MKCPNCGSKEIVFD--------PERGELVCPNCGLVLE   30 (43)
T ss_dssp             ESBTTTSSSEEEEE--------TTTTEEEETTT-BBEE
T ss_pred             CCCcCCcCCceEEc--------CCCCeEECCCCCCEee
Confidence            47999999753222        1336789999997653

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a zinc finger motif found in transcription factor IIB (TFIIB). In eukaryotes the initiation of transcription of protein encoding genes by the polymerase II complexe (Pol II) is modulated by general and specific transcription factors. The general transcription factors operate through common promoters elements (such as the TATA box). At least seven different proteins associate to form the general transcription factors: TFIIA, -IIB, -IID, -IIE, -IIF, -IIG, and -IIH []. TFIIB and TFIID are responsible for promoter recognition and interaction with pol II; together with Pol II, they form a minimal initiation complex capable of transcription under certain conditions. The TATA box of a Pol II promoter is bound in the initiation complex by the TBP subunit of TFIID, which bends the DNA around the C-terminal domain of TFIIB whereas the N-terminal zinc finger of TFIIB interacts with Pol II [, ]. The TFIIB zinc finger adopts a zinc ribbon fold characterised by two beta-hairpins forming two structurally similar zinc-binding sub-sites []. The zinc finger contacts the rbp1 subunit of Pol II through its dock domain, a conserved region of about 70 amino acids located close to the polymerase active site []. In the Pol II complex this surface is located near the RNA exit groove. Interestingly this sequence is best conserved in the three polymerases that utilise a TFIIB-like general transcription factor (Pol II, Pol III, and archaeal RNA polymerase) but not in Pol I []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1VD4_A 1PFT_A 3K1F_M 3K7A_M 1RO4_A 1RLY_A 1DL6_A.

>COG1565 Uncharacterized conserved protein [Function unknown]

Probab=91.98  E-value=1  Score=41.88  Aligned_cols=48  Identities=8%  Similarity=0.057  Sum_probs=37.8

Q ss_pred             CCCcEEEECCCcCHHHHHHHHc----CC----CCeEEEEeCCHHHHHHHHHHHhcC
Q 019861          177 LGGNIIDASCGSGLFSRIFAKS----GL----FSLVVALDYSENMLKQCYEFVQQE  224 (334)
Q Consensus       177 ~~~~vLDiGcG~G~~~~~l~~~----~~----~~~v~giD~s~~~~~~a~~~~~~~  224 (334)
                      ....++|||.|.|.++..+.+.    .|    ..++.-+|+|++..+.-++.++..
T Consensus        77 ~~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L~~~Qk~~L~~~  132 (370)
T COG1565          77 APLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPELRARQKETLKAT  132 (370)
T ss_pred             CCceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHHHHHHHHHHhcc
Confidence            4568999999999988777654    22    468999999999888877776654

>PF09297 zf-NADH-PPase: NADH pyrophosphatase zinc ribbon domain; InterPro: IPR015376 This domain has a zinc ribbon structure and is often found between two NUDIX domains

Probab=91.92  E-value=0.084  Score=30.86  Aligned_cols=27  Identities=22%  Similarity=0.449  Sum_probs=15.6

Q ss_pred             eCCCCCCCccccCCCCcccccccCCccccccccccc
Q 019861           73 ACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTY  108 (334)
Q Consensus        73 ~CPiC~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~  108 (334)
                      =||.||++.....         .....+|+.|++.+
T Consensus         5 fC~~CG~~t~~~~---------~g~~r~C~~Cg~~~   31 (32)
T PF09297_consen    5 FCGRCGAPTKPAP---------GGWARRCPSCGHEH   31 (32)
T ss_dssp             B-TTT--BEEE-S---------SSS-EEESSSS-EE
T ss_pred             ccCcCCccccCCC---------CcCEeECCCCcCEe
Confidence            4999999876544         33679999999754

; GO: 0016787 hydrolase activity, 0046872 metal ion binding; PDB: 1VK6_A 2GB5_A.

>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed

Probab=91.88  E-value=1.2  Score=45.61  Aligned_cols=40  Identities=18%  Similarity=0.208  Sum_probs=29.0

Q ss_pred             HHHHHHHHHcccCCcEEEEEEeccCCCCCchHHHHHHHHHhhhhcCccCCCCHHHHHHHHHhCCCcEEEE
Q 019861          248 STGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLCRACGLVDFKC  317 (334)
Q Consensus       248 ~~~L~~i~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~l~~ll~~~Gf~~v~~  317 (334)
                      ..+++.++++++|||.+.-.                              -....+++-|.++||++.+.
T Consensus       186 ~~~~~~l~~~~~~~~~~~t~------------------------------t~a~~vr~~l~~~GF~v~~~  225 (662)
T PRK01747        186 PNLFNALARLARPGATLATF------------------------------TSAGFVRRGLQEAGFTVRKV  225 (662)
T ss_pred             HHHHHHHHHHhCCCCEEEEe------------------------------ehHHHHHHHHHHcCCeeeec
Confidence            36777888888887776642                              23457888899999987764

>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]

Probab=91.75  E-value=0.36  Score=41.89  Aligned_cols=83  Identities=16%  Similarity=0.203  Sum_probs=55.6

Q ss_pred             CCCCcHHHHHHHHcccCC------CCCCcEEEECCCcCHH--HHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCC----
Q 019861          158 GFPGPEKEFELMKGYLKP------VLGGNIIDASCGSGLF--SRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES----  225 (334)
Q Consensus       158 ~~~~~~~~~~~l~~~l~~------~~~~~vLDiGcG~G~~--~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~----  225 (334)
                      ..|+.......+.+++..      .+..++||||.|.--.  +.-..+.|+  ..+|.|+++..++.|+..+....    
T Consensus        53 pvPgRAdYih~laDLL~s~~g~~~~~~i~~LDIGvGAnCIYPliG~~eYgw--rfvGseid~~sl~sA~~ii~~N~~l~~  130 (292)
T COG3129          53 PVPGRADYIHHLADLLASTSGQIPGKNIRILDIGVGANCIYPLIGVHEYGW--RFVGSEIDSQSLSSAKAIISANPGLER  130 (292)
T ss_pred             CCCChhHHHHHHHHHHHhcCCCCCcCceEEEeeccCcccccccccceeecc--eeecCccCHHHHHHHHHHHHcCcchhh
Confidence            344555555566665532      2345889999987643  222344566  99999999999999998766542    


Q ss_pred             ------------CCC-----CCCceEEEeCcccc
Q 019861          226 ------------NFP-----KDSIDAVHAGAAIH  242 (334)
Q Consensus       226 ------------~~~-----~~~fD~V~~~~vl~  242 (334)
                                  .|+     .+.||+++|+--+|
T Consensus       131 ~I~lr~qk~~~~if~giig~nE~yd~tlCNPPFh  164 (292)
T COG3129         131 AIRLRRQKDSDAIFNGIIGKNERYDATLCNPPFH  164 (292)
T ss_pred             heeEEeccCccccccccccccceeeeEecCCCcc
Confidence                        122     56899999986655

>COG1645 Uncharacterized Zn-finger containing protein [General function prediction only]

Probab=91.62  E-value=0.089  Score=41.35  Aligned_cols=24  Identities=29%  Similarity=0.642  Sum_probs=20.7

Q ss_pred             eeCCCCCCCccccCCCCcccccccCCccccccccc
Q 019861           72 LACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKK  106 (334)
Q Consensus        72 l~CPiC~~~l~~~~~~~~~~~~~~~~~~~C~~C~~  106 (334)
                      ..||.||.+|+...           +.+.||.|+.
T Consensus        29 ~hCp~Cg~PLF~Kd-----------G~v~CPvC~~   52 (131)
T COG1645          29 KHCPKCGTPLFRKD-----------GEVFCPVCGY   52 (131)
T ss_pred             hhCcccCCcceeeC-----------CeEECCCCCc
Confidence            46999999999854           7899999995

>KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis]

Probab=91.49  E-value=1.6  Score=40.71  Aligned_cols=100  Identities=17%  Similarity=0.121  Sum_probs=68.4

Q ss_pred             cCCCCCCcEEEECCCcCHHHHHHHHcCCC----CeEEEEeCCHHHHHHHHHHHhcCC-----------------------
Q 019861          173 LKPVLGGNIIDASCGSGLFSRIFAKSGLF----SLVVALDYSENMLKQCYEFVQQES-----------------------  225 (334)
Q Consensus       173 l~~~~~~~vLDiGcG~G~~~~~l~~~~~~----~~v~giD~s~~~~~~a~~~~~~~~-----------------------  225 (334)
                      +...++.+|||+.+..|.=+..+.+....    ..+++-|.+..-+...........                       
T Consensus       151 L~v~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l~~~~~~v~~~~~~~~p~~~~~~~~  230 (375)
T KOG2198|consen  151 LGVKPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRLPSPNLLVTNHDASLFPNIYLKDGN  230 (375)
T ss_pred             cccCCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhccCCcceeeecccceeccccccccCc
Confidence            45667999999999999888777776432    278999999876666555432111                       


Q ss_pred             CCCCCCceEEEeC------ccccCCCCH-----------------HHHHHHHHHcccCCcEEEEEEeccC
Q 019861          226 NFPKDSIDAVHAG------AAIHCWSSP-----------------STGVAEISRVLRPGGVFVGTTYIVD  272 (334)
Q Consensus       226 ~~~~~~fD~V~~~------~vl~h~~d~-----------------~~~L~~i~r~LkpgG~lii~~~~~~  272 (334)
                      +.....||-|++.      ..+.+-++.                 ..+|..-.++||+||.++-++=...
T Consensus       231 ~~~~~~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~rgl~lLk~GG~lVYSTCSLn  300 (375)
T KOG2198|consen  231 DKEQLKFDRVLVDVPCSGDGTLRKNPNIWKEGWKTQRALGLHALQLRILRRGLRLLKVGGRLVYSTCSLN  300 (375)
T ss_pred             hhhhhhcceeEEecccCCCcccccCchHhhhhhhhhhccCChHHHHHHHHHHHHHhcCCCEEEEeccCCC
Confidence            0122468888863      233333221                 2568888999999999999887654

>PF14353 CpXC: CpXC protein

Probab=91.33  E-value=0.093  Score=41.58  Aligned_cols=40  Identities=18%  Similarity=0.438  Sum_probs=25.9

Q ss_pred             eeCCCCCCCccccCCCCcccc----------cccCCcccccccccccccc
Q 019861           72 LACPICYKPLTWIGDSSLSIE----------SAAGSSLQCNTCKKTYSGV  111 (334)
Q Consensus        72 l~CPiC~~~l~~~~~~~~~~~----------~~~~~~~~C~~C~~~~~~~  111 (334)
                      +.||.|+..........++..          ......+.|++||+.+...
T Consensus         2 itCP~C~~~~~~~v~~~I~~~~~p~l~e~il~g~l~~~~CP~Cg~~~~~~   51 (128)
T PF14353_consen    2 ITCPHCGHEFEFEVWTSINADEDPELKEKILDGSLFSFTCPSCGHKFRLE   51 (128)
T ss_pred             cCCCCCCCeeEEEEEeEEcCcCCHHHHHHHHcCCcCEEECCCCCCceecC
Confidence            689999996644332222211          2255689999999887654

>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]

Probab=91.27  E-value=0.75  Score=44.30  Aligned_cols=97  Identities=15%  Similarity=0.217  Sum_probs=74.2

Q ss_pred             CCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCC---------------------CCCCCCceEE
Q 019861          177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES---------------------NFPKDSIDAV  235 (334)
Q Consensus       177 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~---------------------~~~~~~fD~V  235 (334)
                      .+..+|-+|-|.|.+...+....+...++++++++.+++.++..+.-..                     .-.+..||++
T Consensus       295 ~~~~~lvvg~ggG~l~sfl~~~~p~~~i~~ve~dP~~l~va~q~f~f~q~~r~~V~i~dGl~~~~~~~k~~~~~~~~dvl  374 (482)
T KOG2352|consen  295 TGGKQLVVGLGGGGLPSFLHMSLPKFQITAVEIDPEMLEVATQYFGFMQSDRNKVHIADGLDFLQRTAKSQQEDICPDVL  374 (482)
T ss_pred             ccCcEEEEecCCCccccceeeecCccceeEEEEChhHhhccHhhhchhhhhhhhhhHhhchHHHHHHhhccccccCCcEE
Confidence            3578999999999999999999888899999999999999987643110                     1245689998


Q ss_pred             EeC----ccccCCCCH------HHHHHHHHHcccCCcEEEEEEeccCCC
Q 019861          236 HAG----AAIHCWSSP------STGVAEISRVLRPGGVFVGTTYIVDGP  274 (334)
Q Consensus       236 ~~~----~vl~h~~d~------~~~L~~i~r~LkpgG~lii~~~~~~~~  274 (334)
                      ...    . .|-+.-|      ..+|..++..|.|.|.+++....++..
T Consensus       375 ~~dvds~d-~~g~~~pp~~fva~~~l~~~k~~l~p~g~f~inlv~r~~~  422 (482)
T KOG2352|consen  375 MVDVDSKD-SHGMQCPPPAFVAQVALQPVKMILPPRGMFIINLVTRNSS  422 (482)
T ss_pred             EEECCCCC-cccCcCCchHHHHHHHHHHHhhccCccceEEEEEecCCcc
Confidence            862    2 3334322      367899999999999998877776543

>PF14446 Prok-RING_1: Prokaryotic RING finger family 1

Probab=91.23  E-value=0.11  Score=34.14  Aligned_cols=29  Identities=24%  Similarity=0.527  Sum_probs=22.9

Q ss_pred             ceeCCCCCCCccccCCCCcccccccCCccccccccccccc
Q 019861           71 VLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSG  110 (334)
Q Consensus        71 ~l~CPiC~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~~~  110 (334)
                      .-.|++||.++....           .+++|+.|+..|..
T Consensus         5 ~~~C~~Cg~~~~~~d-----------DiVvCp~CgapyHR   33 (54)
T PF14446_consen    5 GCKCPVCGKKFKDGD-----------DIVVCPECGAPYHR   33 (54)
T ss_pred             CccChhhCCcccCCC-----------CEEECCCCCCcccH
Confidence            357999999876444           68999999988755

>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=91.14  E-value=6  Score=34.57  Aligned_cols=88  Identities=25%  Similarity=0.336  Sum_probs=57.8

Q ss_pred             CCCCcEEEECCCc-CHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcC-----C-C-------CCCCCceEEEeCccc
Q 019861          176 VLGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQE-----S-N-------FPKDSIDAVHAGAAI  241 (334)
Q Consensus       176 ~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~-----~-~-------~~~~~fD~V~~~~vl  241 (334)
                      .++.+||..|+|. |..+..+++.. ..++++++.++...+.+++.-...     . .       ...+.+|+|+.... 
T Consensus       133 ~~~~~vli~g~~~~G~~~~~~a~~~-g~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~~-  210 (271)
T cd05188         133 KPGDTVLVLGAGGVGLLAAQLAKAA-GARVIVTDRSDEKLELAKELGADHVIDYKEEDLEEELRLTGGGGADVVIDAVG-  210 (271)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHc-CCeEEEEcCCHHHHHHHHHhCCceeccCCcCCHHHHHHHhcCCCCCEEEECCC-
Confidence            4678999999986 65555555553 258999999987777765431100     0 0       12356888885432 


Q ss_pred             cCCCCHHHHHHHHHHcccCCcEEEEEEec
Q 019861          242 HCWSSPSTGVAEISRVLRPGGVFVGTTYI  270 (334)
Q Consensus       242 ~h~~d~~~~L~~i~r~LkpgG~lii~~~~  270 (334)
                          .+ ..+..+.+.|+++|.++.....
T Consensus       211 ----~~-~~~~~~~~~l~~~G~~v~~~~~  234 (271)
T cd05188         211 ----GP-ETLAQALRLLRPGGRIVVVGGT  234 (271)
T ss_pred             ----CH-HHHHHHHHhcccCCEEEEEccC
Confidence                21 3577788899999998875543

The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro

>PF09862 DUF2089: Protein of unknown function (DUF2089); InterPro: IPR018658 This family consists of various hypothetical prokaryotic proteins

Probab=90.93  E-value=0.098  Score=40.22  Aligned_cols=25  Identities=32%  Similarity=0.812  Sum_probs=20.2

Q ss_pred             CCCCCCCccccCCCCcccccccCCcccccccccccccc
Q 019861           74 CPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSGV  111 (334)
Q Consensus        74 CPiC~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~~~~  111 (334)
                      ||+||+++.+.             -+.|++|+......
T Consensus         1 CPvCg~~l~vt-------------~l~C~~C~t~i~G~   25 (113)
T PF09862_consen    1 CPVCGGELVVT-------------RLKCPSCGTEIEGE   25 (113)
T ss_pred             CCCCCCceEEE-------------EEEcCCCCCEEEee
Confidence            99999998874             58999999766444

>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known

Probab=90.82  E-value=4.1  Score=33.83  Aligned_cols=112  Identities=19%  Similarity=0.130  Sum_probs=70.9

Q ss_pred             EECCCcCHHHHHHHHcCC-CCeEEEEeCCH--HHHHHHH---HHHh---cCC----------------CCCCCCceEEEe
Q 019861          183 DASCGSGLFSRIFAKSGL-FSLVVALDYSE--NMLKQCY---EFVQ---QES----------------NFPKDSIDAVHA  237 (334)
Q Consensus       183 DiGcG~G~~~~~l~~~~~-~~~v~giD~s~--~~~~~a~---~~~~---~~~----------------~~~~~~fD~V~~  237 (334)
                      =||=|.=.|+..|++... ...+++.-++.  +..+...   +++.   ..+                ....+.||.|+.
T Consensus         2 lvGeGdfSFs~sL~~~~~~~~~l~ATs~ds~~~l~~kY~~~~~nl~~L~~~g~~V~~~VDat~l~~~~~~~~~~FDrIiF   81 (166)
T PF10354_consen    2 LVGEGDFSFSLSLARAFGSATNLVATSYDSEEELLQKYPDAEENLEELRELGVTVLHGVDATKLHKHFRLKNQRFDRIIF   81 (166)
T ss_pred             eeeccchHHHHHHHHHcCCCCeEEEeecCchHHHHHhcccHHHHHHHHhhcCCccccCCCCCcccccccccCCcCCEEEE
Confidence            366677778888887743 45666654443  2222221   2211   111                235688999998


Q ss_pred             CccccCCC--------C-------HHHHHHHHHHcccCCcEEEEEEeccCCCCCchHHHHHHHHHhhhhcCccCCCCHHH
Q 019861          238 GAAIHCWS--------S-------PSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSERE  302 (334)
Q Consensus       238 ~~vl~h~~--------d-------~~~~L~~i~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~  302 (334)
                      ++  -|..        +       ...+++.+..+|+++|.+.++......                        |+.-.
T Consensus        82 NF--PH~G~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~~G~IhVTl~~~~p------------------------y~~W~  135 (166)
T PF10354_consen   82 NF--PHVGGGSEDGKRNIRLNRELLRGFFKSASQLLKPDGEIHVTLKDGQP------------------------YDSWN  135 (166)
T ss_pred             eC--CCCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCC------------------------Ccccc
Confidence            75  2333        0       136789999999999999997765431                        34557


Q ss_pred             HHHHHHhCCCcEEEEeec
Q 019861          303 IEDLCRACGLVDFKCTRN  320 (334)
Q Consensus       303 l~~ll~~~Gf~~v~~~~~  320 (334)
                      +.++.+++||..++....
T Consensus       136 i~~lA~~~gl~l~~~~~F  153 (166)
T PF10354_consen  136 IEELAAEAGLVLVRKVPF  153 (166)
T ss_pred             HHHHHHhcCCEEEEEecC
Confidence            778999999988876543

>KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification]

Probab=90.79  E-value=0.68  Score=43.15  Aligned_cols=43  Identities=19%  Similarity=0.230  Sum_probs=35.3

Q ss_pred             CCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHH
Q 019861          176 VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYE  219 (334)
Q Consensus       176 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~  219 (334)
                      .+-..++|+|.|.|+++..+.-.+ +..|.+||-|....+.|++
T Consensus       152 ~gi~~vvD~GaG~G~LSr~lSl~y-~lsV~aIegsq~~~~ra~r  194 (476)
T KOG2651|consen  152 TGIDQVVDVGAGQGHLSRFLSLGY-GLSVKAIEGSQRLVERAQR  194 (476)
T ss_pred             cCCCeeEEcCCCchHHHHHHhhcc-CceEEEeccchHHHHHHHH
Confidence            344689999999999999998765 4699999999877777664

>COG1656 Uncharacterized conserved protein [Function unknown]

Probab=90.75  E-value=0.088  Score=43.01  Aligned_cols=39  Identities=21%  Similarity=0.483  Sum_probs=24.4

Q ss_pred             CceeCCCCCCCccccCCCCcc------cccccCCccccccccccc
Q 019861           70 NVLACPICYKPLTWIGDSSLS------IESAAGSSLQCNTCKKTY  108 (334)
Q Consensus        70 ~~l~CPiC~~~l~~~~~~~~~------~~~~~~~~~~C~~C~~~~  108 (334)
                      ..-.||.|+.++.........      ........++|++||.+|
T Consensus        96 e~~RCp~CN~~L~~vs~eev~~~Vp~~~~~~~~~f~~C~~CgkiY  140 (165)
T COG1656          96 EFSRCPECNGELEKVSREEVKEKVPEKVYRNYEEFYRCPKCGKIY  140 (165)
T ss_pred             ccccCcccCCEeccCcHHHHhhccchhhhhcccceeECCCCcccc
Confidence            356799999987543321110      111134578899999988

>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]

Probab=90.63  E-value=3.9  Score=42.02  Aligned_cols=95  Identities=13%  Similarity=0.055  Sum_probs=59.7

Q ss_pred             CcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHH----HHHhc--------------CCCCCCCCceEEEeCcc
Q 019861          179 GNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCY----EFVQQ--------------ESNFPKDSIDAVHAGAA  240 (334)
Q Consensus       179 ~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~----~~~~~--------------~~~~~~~~fD~V~~~~v  240 (334)
                      ..+.-.|.|+=.....+.+..|...++-+|-+...-+.+.    ..+..              ...||+-+.=.|+..+.
T Consensus       484 ~~L~~~G~GterieeeL~~~FP~~rv~r~d~Dtt~~k~~~~~~l~~~~~ge~dILiGTQmiaKG~~fp~vtLVgvl~aD~  563 (730)
T COG1198         484 EHLRAVGPGTERIEEELKRLFPGARIIRIDSDTTRRKGALEDLLDQFANGEADILIGTQMIAKGHDFPNVTLVGVLDADT  563 (730)
T ss_pred             CeeEEecccHHHHHHHHHHHCCCCcEEEEccccccchhhHHHHHHHHhCCCCCeeecchhhhcCCCcccceEEEEEechh
Confidence            3678888888889999999999889999987765433222    11211              12355555556666666


Q ss_pred             ccCCCCHH---HHHHHHHHcc---c---CCcEEEEEEeccCC
Q 019861          241 IHCWSSPS---TGVAEISRVL---R---PGGVFVGTTYIVDG  273 (334)
Q Consensus       241 l~h~~d~~---~~L~~i~r~L---k---pgG~lii~~~~~~~  273 (334)
                      .-+.+|..   .+++-+..+.   .   ..|.+++.+.+.+.
T Consensus       564 ~L~~~DfRA~Er~fqll~QvaGRAgR~~~~G~VvIQT~~P~h  605 (730)
T COG1198         564 GLGSPDFRASERTFQLLMQVAGRAGRAGKPGEVVIQTYNPDH  605 (730)
T ss_pred             hhcCCCcchHHHHHHHHHHHHhhhccCCCCCeEEEEeCCCCc
Confidence            66777763   3333333333   1   34678888888764

>PF13453 zf-TFIIB: Transcription factor zinc-finger

Probab=90.62  E-value=0.052  Score=33.74  Aligned_cols=34  Identities=21%  Similarity=0.384  Sum_probs=24.1

Q ss_pred             eCCCCCCCccccCCCCcccccccCCcccccccccccccccC
Q 019861           73 ACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSGVGT  113 (334)
Q Consensus        73 ~CPiC~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~~~~~~  113 (334)
                      .||.|+..+.....       ....+.+|++|+-++.....
T Consensus         1 ~CP~C~~~l~~~~~-------~~~~id~C~~C~G~W~d~~e   34 (41)
T PF13453_consen    1 KCPRCGTELEPVRL-------GDVEIDVCPSCGGIWFDAGE   34 (41)
T ss_pred             CcCCCCcccceEEE-------CCEEEEECCCCCeEEccHHH
Confidence            49999997654321       23478999999988866543

>PRK10742 putative methyltransferase; Provisional

Probab=90.56  E-value=0.94  Score=40.05  Aligned_cols=55  Identities=16%  Similarity=0.100  Sum_probs=45.5

Q ss_pred             HHHHcccCCCCCC--cEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhc
Q 019861          167 ELMKGYLKPVLGG--NIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQ  223 (334)
Q Consensus       167 ~~l~~~l~~~~~~--~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~  223 (334)
                      +.+.+.++..++.  +|||.-+|.|..+..++..|.  .|+++|-++......++.+..
T Consensus        76 ~~l~kAvglk~g~~p~VLD~TAGlG~Da~~las~G~--~V~~vEr~p~vaalL~dgL~r  132 (250)
T PRK10742         76 EAVAKAVGIKGDYLPDVVDATAGLGRDAFVLASVGC--RVRMLERNPVVAALLDDGLAR  132 (250)
T ss_pred             cHHHHHhCCCCCCCCEEEECCCCccHHHHHHHHcCC--EEEEEECCHHHHHHHHHHHHH
Confidence            3556666655666  899999999999999999976  799999999988888877654

>PF01927 Mut7-C: Mut7-C RNAse domain; InterPro: IPR002782 This prokaryotic family of proteins have no known function

Probab=90.31  E-value=0.15  Score=41.46  Aligned_cols=39  Identities=23%  Similarity=0.500  Sum_probs=24.8

Q ss_pred             ceeCCCCCCCccccCCCCc------ccccccCCcccccccccccc
Q 019861           71 VLACPICYKPLTWIGDSSL------SIESAAGSSLQCNTCKKTYS  109 (334)
Q Consensus        71 ~l~CPiC~~~l~~~~~~~~------~~~~~~~~~~~C~~C~~~~~  109 (334)
                      .-.||.|++.+........      ........+++|+.||.+|-
T Consensus        91 ~sRC~~CN~~L~~v~~~~v~~~vp~~v~~~~~~f~~C~~C~kiyW  135 (147)
T PF01927_consen   91 FSRCPKCNGPLRPVSKEEVKDRVPPYVYETYDEFWRCPGCGKIYW  135 (147)
T ss_pred             CCccCCCCcEeeechhhccccccCccccccCCeEEECCCCCCEec
Confidence            4579999997744332211      11122445899999999883

The proteins contain four conserved cysteines that may be involved in metal binding or disulphide bridges.

>COG4301 Uncharacterized conserved protein [Function unknown]

Probab=90.29  E-value=6.1  Score=34.93  Aligned_cols=94  Identities=18%  Similarity=0.307  Sum_probs=62.1

Q ss_pred             CCCcEEEECCCcCHHHHHHHH----cCCCCeEEEEeCCHHHHHHHHHHHhcCC-----------------CCCCCCce-E
Q 019861          177 LGGNIIDASCGSGLFSRIFAK----SGLFSLVVALDYSENMLKQCYEFVQQES-----------------NFPKDSID-A  234 (334)
Q Consensus       177 ~~~~vLDiGcG~G~~~~~l~~----~~~~~~v~giD~s~~~~~~a~~~~~~~~-----------------~~~~~~fD-~  234 (334)
                      .+...+|+|+|+..=++.+.+    .+.-..++-+|++...++...+.+...-                 ..+...-- .
T Consensus        78 g~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai~~~y~~l~v~~l~~~~~~~La~~~~~~~Rl~  157 (321)
T COG4301          78 GACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATATAILREYPGLEVNALCGDYELALAELPRGGRRLF  157 (321)
T ss_pred             CcceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHHHHHHhCCCCeEeehhhhHHHHHhcccCCCeEEE
Confidence            357999999999865555544    3444689999999998887665443221                 12222222 2


Q ss_pred             EEeCccccCCC-CH-HHHHHHHHHcccCCcEEEEEEec
Q 019861          235 VHAGAAIHCWS-SP-STGVAEISRVLRPGGVFVGTTYI  270 (334)
Q Consensus       235 V~~~~vl~h~~-d~-~~~L~~i~r~LkpgG~lii~~~~  270 (334)
                      ++....|-.+. ++ ..+|..++..|+||-.+++.+-.
T Consensus       158 ~flGStlGN~tp~e~~~Fl~~l~~a~~pGd~~LlGvDl  195 (321)
T COG4301         158 VFLGSTLGNLTPGECAVFLTQLRGALRPGDYFLLGVDL  195 (321)
T ss_pred             EEecccccCCChHHHHHHHHHHHhcCCCcceEEEeccc
Confidence            33344565554 22 47899999999999998885543

>PRK09880 L-idonate 5-dehydrogenase; Provisional

Probab=89.87  E-value=2.8  Score=38.87  Aligned_cols=87  Identities=20%  Similarity=0.222  Sum_probs=56.1

Q ss_pred             CCCCcEEEECCCc-CHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCC-------CC-----CCCCceEEEeCcccc
Q 019861          176 VLGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES-------NF-----PKDSIDAVHAGAAIH  242 (334)
Q Consensus       176 ~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~-------~~-----~~~~fD~V~~~~vl~  242 (334)
                      .++.+||=+|+|. |.++..+++.....+++++|.++..++.+++. ....       .+     ..+.+|+|+-.    
T Consensus       168 ~~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~l-Ga~~vi~~~~~~~~~~~~~~g~~D~vid~----  242 (343)
T PRK09880        168 LQGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLAREM-GADKLVNPQNDDLDHYKAEKGYFDVSFEV----  242 (343)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHHc-CCcEEecCCcccHHHHhccCCCCCEEEEC----
Confidence            3578899898864 45555566553223689999999988888763 2111       00     01236776543    


Q ss_pred             CCCCHHHHHHHHHHcccCCcEEEEEEe
Q 019861          243 CWSSPSTGVAEISRVLRPGGVFVGTTY  269 (334)
Q Consensus       243 h~~d~~~~L~~i~r~LkpgG~lii~~~  269 (334)
                       ...+ ..++...+.|++||++++...
T Consensus       243 -~G~~-~~~~~~~~~l~~~G~iv~~G~  267 (343)
T PRK09880        243 -SGHP-SSINTCLEVTRAKGVMVQVGM  267 (343)
T ss_pred             -CCCH-HHHHHHHHHhhcCCEEEEEcc
Confidence             3333 357788899999999887654

>PF11781 RRN7: RNA polymerase I-specific transcription initiation factor Rrn7; InterPro: IPR021752 Rrn7 is a transcription binding factor that associates strongly with both Rrn6 and Rrn11 to form a complex which itself binds the TATA-binding protein and is required for transcription by the core domain of the RNA PolI promoter [],[]

Probab=89.62  E-value=0.18  Score=30.34  Aligned_cols=28  Identities=18%  Similarity=0.511  Sum_probs=20.6

Q ss_pred             CceeCCCCCCCccccCCCCcccccccCCcccccccccc
Q 019861           70 NVLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKT  107 (334)
Q Consensus        70 ~~l~CPiC~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~  107 (334)
                      ...+|+.|++.....          ..+.+.|..||++
T Consensus         7 ~~~~C~~C~~~~~~~----------~dG~~yC~~cG~~   34 (36)
T PF11781_consen    7 PNEPCPVCGSRWFYS----------DDGFYYCDRCGHQ   34 (36)
T ss_pred             CCCcCCCCCCeEeEc----------cCCEEEhhhCceE
Confidence            446799999984332          2378999999975

>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase

Probab=89.51  E-value=1.6  Score=40.49  Aligned_cols=91  Identities=14%  Similarity=0.099  Sum_probs=56.5

Q ss_pred             CCCCCcEEEECCCc-CHHHHHHHHc-CCCCeEEEEeCCHHHHHHHHHHHhcCC---CCCC-CCceEEEeCccccCCCCHH
Q 019861          175 PVLGGNIIDASCGS-GLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQQES---NFPK-DSIDAVHAGAAIHCWSSPS  248 (334)
Q Consensus       175 ~~~~~~vLDiGcG~-G~~~~~l~~~-~~~~~v~giD~s~~~~~~a~~~~~~~~---~~~~-~~fD~V~~~~vl~h~~d~~  248 (334)
                      ..++.+||-+|+|. |.++..++++ ....+++++|.++.-++.+++ .....   ...+ ..+|+|+-.-.-   ..-.
T Consensus       161 ~~~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~-~~~~~~~~~~~~~~g~d~viD~~G~---~~~~  236 (341)
T cd08237         161 HKDRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSF-ADETYLIDDIPEDLAVDHAFECVGG---RGSQ  236 (341)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhh-cCceeehhhhhhccCCcEEEECCCC---CccH
Confidence            34588999999875 4455555553 223479999999888887764 21111   1111 247777643220   0023


Q ss_pred             HHHHHHHHcccCCcEEEEEEe
Q 019861          249 TGVAEISRVLRPGGVFVGTTY  269 (334)
Q Consensus       249 ~~L~~i~r~LkpgG~lii~~~  269 (334)
                      ..+....+.|++||++++.-.
T Consensus       237 ~~~~~~~~~l~~~G~iv~~G~  257 (341)
T cd08237         237 SAINQIIDYIRPQGTIGLMGV  257 (341)
T ss_pred             HHHHHHHHhCcCCcEEEEEee
Confidence            468888999999999887543

NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (

>PRK13699 putative methylase; Provisional

Probab=89.24  E-value=1.3  Score=38.83  Aligned_cols=19  Identities=26%  Similarity=0.469  Sum_probs=16.6

Q ss_pred             HHHHHHHHHcccCCcEEEE
Q 019861          248 STGVAEISRVLRPGGVFVG  266 (334)
Q Consensus       248 ~~~L~~i~r~LkpgG~lii  266 (334)
                      ...+.+++|+|||||.+++
T Consensus        52 ~~~l~E~~RVLKpgg~l~i   70 (227)
T PRK13699         52 QPACNEMYRVLKKDALMVS   70 (227)
T ss_pred             HHHHHHHHHHcCCCCEEEE
Confidence            4678999999999998876

>PF01780 Ribosomal_L37ae: Ribosomal L37ae protein family; InterPro: IPR002674 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=89.13  E-value=0.17  Score=37.10  Aligned_cols=32  Identities=28%  Similarity=0.603  Sum_probs=22.6

Q ss_pred             CceeCCCCCCCccccCCCCcccccccCCccccccccccccc
Q 019861           70 NVLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSG  110 (334)
Q Consensus        70 ~~l~CPiC~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~~~  110 (334)
                      ..+.||.|+.......         ..++|.|..|+..+..
T Consensus        34 ~ky~Cp~Cgk~~vkR~---------a~GIW~C~~C~~~~AG   65 (90)
T PF01780_consen   34 AKYTCPFCGKTSVKRV---------ATGIWKCKKCGKKFAG   65 (90)
T ss_dssp             S-BEESSSSSSEEEEE---------ETTEEEETTTTEEEE-
T ss_pred             CCCcCCCCCCceeEEe---------eeEEeecCCCCCEEeC
Confidence            4588999999653322         3479999999987643

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This ribosomal protein is found in archaebacteria and eukaryotes []. Ribosomal protein L37 has a single zinc finger-like motif of the C2-C2 type [].; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 4A1E_Y 4A17_Y 4A1C_Y 4A1A_Y 3O58_g 3IZS_m 3O5H_g 1S1I_9 3IZR_m 1YSH_D ....

>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]

Probab=89.12  E-value=0.68  Score=43.92  Aligned_cols=45  Identities=20%  Similarity=0.349  Sum_probs=39.0

Q ss_pred             CcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcC
Q 019861          179 GNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQE  224 (334)
Q Consensus       179 ~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~  224 (334)
                      ..+||||.|+|.++..+..+|. ..|++++.-..|.+.|++.....
T Consensus        68 v~vLdigtGTGLLSmMAvraga-D~vtA~EvfkPM~d~arkI~~kn  112 (636)
T KOG1501|consen   68 VFVLDIGTGTGLLSMMAVRAGA-DSVTACEVFKPMVDLARKIMHKN  112 (636)
T ss_pred             EEEEEccCCccHHHHHHHHhcC-CeEEeehhhchHHHHHHHHHhcC
Confidence            3689999999999999999884 47999999999999999876554

>PF01096 TFIIS_C: Transcription factor S-II (TFIIS); InterPro: IPR001222 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=89.05  E-value=0.12  Score=31.83  Aligned_cols=37  Identities=16%  Similarity=0.339  Sum_probs=19.3

Q ss_pred             eeCCCCCCCccccCCC-CcccccccCCccccccccccc
Q 019861           72 LACPICYKPLTWIGDS-SLSIESAAGSSLQCNTCKKTY  108 (334)
Q Consensus        72 l~CPiC~~~l~~~~~~-~~~~~~~~~~~~~C~~C~~~~  108 (334)
                      +.||.||+........ .-+.+....-++.|.+|++.+
T Consensus         1 ~~Cp~Cg~~~a~~~~~Q~rsaDE~~T~fy~C~~C~~~w   38 (39)
T PF01096_consen    1 IKCPKCGHNEAVFFQIQTRSADEPMTLFYVCCNCGHRW   38 (39)
T ss_dssp             S--SSS-SSEEEEEEESSSSSSSSSEEEEEESSSTEEE
T ss_pred             CCCcCCCCCeEEEEEeeccCCCCCCeEEEEeCCCCCee
Confidence            3699999965332211 111122234579999999865

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a zinc finger motif found in transcription factor IIs (TFIIS). In eukaryotes the initiation of transcription of protein encoding genes by polymerase II (Pol II) is modulated by general and specific transcription factors. The general transcription factors operate through common promoters elements (such as the TATA box). At least eight different proteins associate to form the general transcription factors: TFIIA, -IIB, -IID, -IIE, -IIF, -IIG, -IIH and -IIS []. During mRNA elongation, Pol II can encounter DNA sequences that cause reverse movement of the enzyme. Such backtracking involves extrusion of the RNA 3'-end into the pore, and can lead to transcriptional arrest. Escape from arrest requires cleavage of the extruded RNA with the help of TFIIS, which induces mRNA cleavage by enhancing the intrinsic nuclease activity of RNA polymerase (Pol) II, past template-encoded pause sites []. TFIIS extends from the polymerase surface via a pore to the internal active site. Two essential and invariant acidic residues in a TFIIS loop complement the Pol II active site and could position a metal ion and a water molecule for hydrolytic RNA cleavage. TFIIS also induces extensive structural changes in Pol II that would realign nucleic acids in the active centre. TFIIS is a protein of about 300 amino acids. It contains three regions: a variable N-terminal domain not required for TFIIS activity; a conserved central domain required for Pol II binding; and a conserved C-terminal C4-type zinc finger essential for RNA cleavage. The zinc finger folds in a conformation termed a zinc ribbon [] characterised by a three-stranded antiparallel beta-sheet and two beta-hairpins. A backbone model for Pol II-TFIIS complex was obtained from X-ray analysis. It shows that a beta hairpin protrudes from the zinc finger and complements the pol II active site []. Some viral proteins also contain the TFIIS zinc ribbon C-terminal domain. The Vaccinia virus protein, unlike its eukaryotic homologue, is an integral RNA polymerase subunit rather than a readily separable transcription factor []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003676 nucleic acid binding, 0008270 zinc ion binding, 0006351 transcription, DNA-dependent; PDB: 3M4O_I 3S14_I 2E2J_I 4A3J_I 3HOZ_I 1TWA_I 3S1Q_I 3S1N_I 1TWG_I 3I4M_I ....

>PRK00398 rpoP DNA-directed RNA polymerase subunit P; Provisional

Probab=88.99  E-value=0.28  Score=31.22  Aligned_cols=29  Identities=17%  Similarity=0.441  Sum_probs=21.0

Q ss_pred             ceeCCCCCCCccccCCCCcccccccCCccccccccccc
Q 019861           71 VLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTY  108 (334)
Q Consensus        71 ~l~CPiC~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~  108 (334)
                      .+.||.||..+.....         ....+|+.||.-.
T Consensus         3 ~y~C~~CG~~~~~~~~---------~~~~~Cp~CG~~~   31 (46)
T PRK00398          3 EYKCARCGREVELDEY---------GTGVRCPYCGYRI   31 (46)
T ss_pred             EEECCCCCCEEEECCC---------CCceECCCCCCeE
Confidence            4789999997765431         1368999999744

>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members

Probab=88.96  E-value=4  Score=37.32  Aligned_cols=88  Identities=19%  Similarity=0.214  Sum_probs=58.3

Q ss_pred             CCCCCcEEEECCCc-CHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhc-----CC--------CCCCCCceEEEeCcc
Q 019861          175 PVLGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQ-----ES--------NFPKDSIDAVHAGAA  240 (334)
Q Consensus       175 ~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~-----~~--------~~~~~~fD~V~~~~v  240 (334)
                      ..++.+||..|+|. |..+..+++.. ..++++++.++...+.+++.-..     ..        ....+.+|+|+....
T Consensus       163 ~~~~~~vli~g~g~vG~~~~~la~~~-G~~V~~~~~s~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~D~vid~~g  241 (338)
T cd08254         163 VKPGETVLVIGLGGLGLNAVQIAKAM-GAAVIAVDIKEEKLELAKELGADEVLNSLDDSPKDKKAAGLGGGFDVIFDFVG  241 (338)
T ss_pred             CCCCCEEEEECCcHHHHHHHHHHHHc-CCEEEEEcCCHHHHHHHHHhCCCEEEcCCCcCHHHHHHHhcCCCceEEEECCC
Confidence            44577888888763 66666666653 24799999999888877542110     00        122456888875421


Q ss_pred             ccCCCCHHHHHHHHHHcccCCcEEEEEEe
Q 019861          241 IHCWSSPSTGVAEISRVLRPGGVFVGTTY  269 (334)
Q Consensus       241 l~h~~d~~~~L~~i~r~LkpgG~lii~~~  269 (334)
                            ....++++.+.|+++|.++....
T Consensus       242 ------~~~~~~~~~~~l~~~G~~v~~g~  264 (338)
T cd08254         242 ------TQPTFEDAQKAVKPGGRIVVVGL  264 (338)
T ss_pred             ------CHHHHHHHHHHhhcCCEEEEECC
Confidence                  13468889999999999887643

This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio

>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein

Probab=88.79  E-value=5.3  Score=36.88  Aligned_cols=90  Identities=16%  Similarity=0.089  Sum_probs=57.8

Q ss_pred             cCCCCCCcEEEECCCc-CHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcC----CCCCCCCceEEEeCccccCCCCH
Q 019861          173 LKPVLGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQE----SNFPKDSIDAVHAGAAIHCWSSP  247 (334)
Q Consensus       173 l~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~----~~~~~~~fD~V~~~~vl~h~~d~  247 (334)
                      .+..++.+||=.|+|. |.++..+++.. ..++++++.++.-.+.+++.-...    .....+.+|+++....     .+
T Consensus       161 ~~~~~g~~VlV~G~g~iG~~a~~~a~~~-G~~vi~~~~~~~~~~~a~~~Ga~~vi~~~~~~~~~~d~~i~~~~-----~~  234 (329)
T TIGR02822       161 ASLPPGGRLGLYGFGGSAHLTAQVALAQ-GATVHVMTRGAAARRLALALGAASAGGAYDTPPEPLDAAILFAP-----AG  234 (329)
T ss_pred             cCCCCCCEEEEEcCCHHHHHHHHHHHHC-CCeEEEEeCChHHHHHHHHhCCceeccccccCcccceEEEECCC-----cH
Confidence            3445688999999753 44445555543 348999999988888877642211    0111245787654332     22


Q ss_pred             HHHHHHHHHcccCCcEEEEEEe
Q 019861          248 STGVAEISRVLRPGGVFVGTTY  269 (334)
Q Consensus       248 ~~~L~~i~r~LkpgG~lii~~~  269 (334)
                       ..+....+.|++||++++.-.
T Consensus       235 -~~~~~~~~~l~~~G~~v~~G~  255 (329)
T TIGR02822       235 -GLVPPALEALDRGGVLAVAGI  255 (329)
T ss_pred             -HHHHHHHHhhCCCcEEEEEec
Confidence             368888899999999987554

Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.

>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase

Probab=88.52  E-value=3  Score=38.10  Aligned_cols=87  Identities=14%  Similarity=0.111  Sum_probs=54.7

Q ss_pred             CCCcEEEECCCc-CHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCC-CCCCCCceEEEeCccccCCCCHHHHHHHH
Q 019861          177 LGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES-NFPKDSIDAVHAGAAIHCWSSPSTGVAEI  254 (334)
Q Consensus       177 ~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~-~~~~~~fD~V~~~~vl~h~~d~~~~L~~i  254 (334)
                      ++.++|=+|+|. |.++..+++......+.++|.++..++.+.....-+. ......+|+|+-.-     ..+ ..+..+
T Consensus       144 ~~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~~~rl~~a~~~~~i~~~~~~~~g~Dvvid~~-----G~~-~~~~~~  217 (308)
T TIGR01202       144 KVLPDLIVGHGTLGRLLARLTKAAGGSPPAVWETNPRRRDGATGYEVLDPEKDPRRDYRAIYDAS-----GDP-SLIDTL  217 (308)
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHhhhhccccChhhccCCCCCEEEECC-----CCH-HHHHHH
Confidence            466888889875 6666666665322347778988877776654211000 00123578777543     333 357888


Q ss_pred             HHcccCCcEEEEEEe
Q 019861          255 SRVLRPGGVFVGTTY  269 (334)
Q Consensus       255 ~r~LkpgG~lii~~~  269 (334)
                      .+.|+++|++++.-.
T Consensus       218 ~~~l~~~G~iv~~G~  232 (308)
T TIGR01202       218 VRRLAKGGEIVLAGF  232 (308)
T ss_pred             HHhhhcCcEEEEEee
Confidence            899999999987554

>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain

Probab=88.41  E-value=9  Score=31.02  Aligned_cols=91  Identities=19%  Similarity=0.222  Sum_probs=53.6

Q ss_pred             CcEEEECCCcCHHHHHH-------HHcCCCCeEEEEeCCHHHHHHHHHHHhcCC--------------------------
Q 019861          179 GNIIDASCGSGLFSRIF-------AKSGLFSLVVALDYSENMLKQCYEFVQQES--------------------------  225 (334)
Q Consensus       179 ~~vLDiGcG~G~~~~~l-------~~~~~~~~v~giD~s~~~~~~a~~~~~~~~--------------------------  225 (334)
                      .++||+-+|.|-.-..+       .+++.  ++..+.+.....+...+.+.+..                          
T Consensus         6 ~~~~d~hpGaGKTr~vlp~~~~~~i~~~~--rvLvL~PTRvva~em~~aL~~~~~~~~t~~~~~~~~g~~~i~vMc~at~   83 (148)
T PF07652_consen    6 LTVLDLHPGAGKTRRVLPEIVREAIKRRL--RVLVLAPTRVVAEEMYEALKGLPVRFHTNARMRTHFGSSIIDVMCHATY   83 (148)
T ss_dssp             EEEEE--TTSSTTTTHHHHHHHHHHHTT----EEEEESSHHHHHHHHHHTTTSSEEEESTTSS----SSSSEEEEEHHHH
T ss_pred             eeEEecCCCCCCcccccHHHHHHHHHccC--eEEEecccHHHHHHHHHHHhcCCcccCceeeeccccCCCcccccccHHH
Confidence            48999999999543322       22343  89999999988888877765432                          


Q ss_pred             ------CCCCCCceEEEeCccccCCCCHHHH-HHHHHHcccCCc--EEEEEEeccCC
Q 019861          226 ------NFPKDSIDAVHAGAAIHCWSSPSTG-VAEISRVLRPGG--VFVGTTYIVDG  273 (334)
Q Consensus       226 ------~~~~~~fD~V~~~~vl~h~~d~~~~-L~~i~r~LkpgG--~lii~~~~~~~  273 (334)
                            +..-..||+||+..  .|+.||..+ .+...+.+...|  .+++.+....+
T Consensus        84 ~~~~~~p~~~~~yd~II~DE--cH~~Dp~sIA~rg~l~~~~~~g~~~~i~mTATPPG  138 (148)
T PF07652_consen   84 GHFLLNPCRLKNYDVIIMDE--CHFTDPTSIAARGYLRELAESGEAKVIFMTATPPG  138 (148)
T ss_dssp             HHHHHTSSCTTS-SEEEECT--TT--SHHHHHHHHHHHHHHHTTS-EEEEEESS-TT
T ss_pred             HHHhcCcccccCccEEEEec--cccCCHHHHhhheeHHHhhhccCeeEEEEeCCCCC
Confidence                  22345799999998  488899743 233333344444  66666666543

The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....

>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1

Probab=88.29  E-value=1  Score=35.16  Aligned_cols=78  Identities=28%  Similarity=0.287  Sum_probs=55.6

Q ss_pred             CcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcC------C--------CCCCCCceEEEeCccccCCCCHHHHHH
Q 019861          187 GSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQE------S--------NFPKDSIDAVHAGAAIHCWSSPSTGVA  252 (334)
Q Consensus       187 G~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~------~--------~~~~~~fD~V~~~~vl~h~~d~~~~L~  252 (334)
                      |.|.++..+++... .+++++|.++.-++.+++.-...      .        ......+|+|+-.-.     . ...++
T Consensus         1 ~vG~~a~q~ak~~G-~~vi~~~~~~~k~~~~~~~Ga~~~~~~~~~~~~~~i~~~~~~~~~d~vid~~g-----~-~~~~~   73 (130)
T PF00107_consen    1 GVGLMAIQLAKAMG-AKVIATDRSEEKLELAKELGADHVIDYSDDDFVEQIRELTGGRGVDVVIDCVG-----S-GDTLQ   73 (130)
T ss_dssp             HHHHHHHHHHHHTT-SEEEEEESSHHHHHHHHHTTESEEEETTTSSHHHHHHHHTTTSSEEEEEESSS-----S-HHHHH
T ss_pred             ChHHHHHHHHHHcC-CEEEEEECCHHHHHHHHhhcccccccccccccccccccccccccceEEEEecC-----c-HHHHH
Confidence            35777777777643 69999999999998888642111      0        122357999886532     2 35789


Q ss_pred             HHHHcccCCcEEEEEEecc
Q 019861          253 EISRVLRPGGVFVGTTYIV  271 (334)
Q Consensus       253 ~i~r~LkpgG~lii~~~~~  271 (334)
                      ....+|+++|.+++.....
T Consensus        74 ~~~~~l~~~G~~v~vg~~~   92 (130)
T PF00107_consen   74 EAIKLLRPGGRIVVVGVYG   92 (130)
T ss_dssp             HHHHHEEEEEEEEEESSTS
T ss_pred             HHHHHhccCCEEEEEEccC
Confidence            9999999999999876664

1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....

>PRK00464 nrdR transcriptional regulator NrdR; Validated

Probab=87.88  E-value=0.28  Score=40.10  Aligned_cols=42  Identities=24%  Similarity=0.491  Sum_probs=23.4

Q ss_pred             eeCCCCCCCccc-cCCCCcccccccCCcccccccccccccccC
Q 019861           72 LACPICYKPLTW-IGDSSLSIESAAGSSLQCNTCKKTYSGVGT  113 (334)
Q Consensus        72 l~CPiC~~~l~~-~~~~~~~~~~~~~~~~~C~~C~~~~~~~~~  113 (334)
                      ..||-||++... .....++.+-......+|++||..|..-+.
T Consensus         1 m~cp~c~~~~~~~~~s~~~~~~~~~~~~~~c~~c~~~f~~~e~   43 (154)
T PRK00464          1 MRCPFCGHPDTRVIDSRPAEDGNAIRRRRECLACGKRFTTFER   43 (154)
T ss_pred             CcCCCCCCCCCEeEeccccCCCCceeeeeeccccCCcceEeEe
Confidence            369999996522 111111111112234899999998866543

>COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms]

Probab=87.78  E-value=1.7  Score=36.72  Aligned_cols=99  Identities=15%  Similarity=0.059  Sum_probs=65.1

Q ss_pred             CCCcEEEECCCcCHHHHHHHH----cCCCCeEEEEeCCHHHHHHHHHHHhcC------C----------CCCCCCceEEE
Q 019861          177 LGGNIIDASCGSGLFSRIFAK----SGLFSLVVALDYSENMLKQCYEFVQQE------S----------NFPKDSIDAVH  236 (334)
Q Consensus       177 ~~~~vLDiGcG~G~~~~~l~~----~~~~~~v~giD~s~~~~~~a~~~~~~~------~----------~~~~~~fD~V~  236 (334)
                      .+..|+|+|...|..+...+.    .|...+|+++|++-..+..+.......      .          ....+.--+.+
T Consensus        69 ~P~lvIE~Gs~~GGSal~fA~~m~s~Gq~~kvl~vdIdi~~~~p~a~e~p~i~f~egss~dpai~eqi~~~~~~y~kIfv  148 (237)
T COG3510          69 QPSLVIEFGSRHGGSALFFANMMISIGQPFKVLGVDIDIKPLDPAAREVPDILFIEGSSTDPAIAEQIRRLKNEYPKIFV  148 (237)
T ss_pred             CCceeEeeccccCchhhhhhHhHHhcCCCceEEEEecccCcCChhhhcCCCeEEEeCCCCCHHHHHHHHHHhcCCCcEEE
Confidence            357999999999976655544    354469999998876544433321110      0          01122224445


Q ss_pred             eCccccCCCCHHHHHHHHHHcccCCcEEEEEEeccCCCC
Q 019861          237 AGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPF  275 (334)
Q Consensus       237 ~~~vl~h~~d~~~~L~~i~r~LkpgG~lii~~~~~~~~~  275 (334)
                      +-.+-||.....+.|+...++|.-|-++++.+-+.++..
T Consensus       149 ilDsdHs~~hvLAel~~~~pllsaG~Y~vVeDs~v~dlp  187 (237)
T COG3510         149 ILDSDHSMEHVLAELKLLAPLLSAGDYLVVEDSNVNDLP  187 (237)
T ss_pred             EecCCchHHHHHHHHHHhhhHhhcCceEEEecccccCCC
Confidence            555666666667788888999999999999988887653

>PF11253 DUF3052: Protein of unknown function (DUF3052); InterPro: IPR021412 This family of proteins with unknown function appears to be restricted to Actinobacteria

Probab=87.48  E-value=12  Score=29.34  Aligned_cols=72  Identities=17%  Similarity=0.090  Sum_probs=56.3

Q ss_pred             CCCceEEEeCccccCCCCHHHHHHHHHHcccCCcEEEEEEeccCCCCCchHHHHHHHHHhhhhcCccCCCCHHHHHHHHH
Q 019861          229 KDSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLCR  308 (334)
Q Consensus       229 ~~~fD~V~~~~vl~h~~d~~~~L~~i~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~l~~ll~  308 (334)
                      ++-.|+|+.++--+. .+....|-.+.+.|..+|.+.+.+|-..                     ...+.++.++.+...
T Consensus        43 ddvvD~vllWwR~~D-gDL~D~LvDa~~~L~d~G~IWvltPK~g---------------------r~g~V~~~~I~eaA~  100 (127)
T PF11253_consen   43 DDVVDVVLLWWRDDD-GDLVDALVDARTNLADDGVIWVLTPKAG---------------------RPGHVEPSDIREAAP  100 (127)
T ss_pred             cccccEEEEEEECCc-chHHHHHHHHHhhhcCCCEEEEEccCCC---------------------CCCCCCHHHHHHHHh
Confidence            567899998775433 2667788889999999999999998753                     234568889999999


Q ss_pred             hCCCcEEEEeecCc
Q 019861          309 ACGLVDFKCTRNRG  322 (334)
Q Consensus       309 ~~Gf~~v~~~~~g~  322 (334)
                      -+|+...+....+.
T Consensus       101 taGL~~t~~~~v~~  114 (127)
T PF11253_consen  101 TAGLVQTKSCAVGD  114 (127)
T ss_pred             hcCCeeeeeeccCC
Confidence            99998888666543

>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit

Probab=87.28  E-value=2.2  Score=41.94  Aligned_cols=89  Identities=22%  Similarity=0.240  Sum_probs=63.0

Q ss_pred             CCCCcEEEECCCc-CHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCC---------------------C-------
Q 019861          176 VLGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES---------------------N-------  226 (334)
Q Consensus       176 ~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~---------------------~-------  226 (334)
                      .++.++|=+|+|. |..+..++... ...++++|.++..++.+++. ....                     +       
T Consensus       162 vp~akVlViGaG~iGl~Aa~~ak~l-GA~V~v~d~~~~rle~a~~l-Ga~~v~v~~~e~g~~~~gYa~~~s~~~~~~~~~  239 (511)
T TIGR00561       162 VPPAKVLVIGAGVAGLAAIGAANSL-GAIVRAFDTRPEVKEQVQSM-GAEFLELDFKEEGGSGDGYAKVMSEEFIAAEME  239 (511)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHc-CCeEEeccccccccccccceeecCHHHHHHHHH
Confidence            4578999999997 44444444432 34899999999988887752 1110                     0       


Q ss_pred             -CC--CCCceEEEeCccccCCCCHHHHHHHHHHcccCCcEEEE
Q 019861          227 -FP--KDSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVG  266 (334)
Q Consensus       227 -~~--~~~fD~V~~~~vl~h~~d~~~~L~~i~r~LkpgG~lii  266 (334)
                       ++  -..+|+|+..-.+..-+.|.-+.++..+.+|||++++-
T Consensus       240 ~~~e~~~~~DIVI~TalipG~~aP~Lit~emv~~MKpGsvIVD  282 (511)
T TIGR00561       240 LFAAQAKEVDIIITTALIPGKPAPKLITEEMVDSMKAGSVIVD  282 (511)
T ss_pred             HHHHHhCCCCEEEECcccCCCCCCeeehHHHHhhCCCCCEEEE
Confidence             11  24699998888777767777788899999999998764

In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.

>PF14354 Lar_restr_allev: Restriction alleviation protein Lar

Probab=87.20  E-value=0.35  Score=32.77  Aligned_cols=36  Identities=17%  Similarity=0.406  Sum_probs=19.3

Q ss_pred             CceeCCCCCCCccccCCCCcccccccCCccccccccc
Q 019861           70 NVLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKK  106 (334)
Q Consensus        70 ~~l~CPiC~~~l~~~~~~~~~~~~~~~~~~~C~~C~~  106 (334)
                      ....||.||.+......... ......-++.|..||.
T Consensus         2 ~LkPCPFCG~~~~~~~~~~~-~~~~~~~~V~C~~Cga   37 (61)
T PF14354_consen    2 ELKPCPFCGSADVLIRQDEG-FDYGMYYYVECTDCGA   37 (61)
T ss_pred             CCcCCCCCCCcceEeecccC-CCCCCEEEEEcCCCCC
Confidence            45789999875433221000 0000004578999987

>PRK14890 putative Zn-ribbon RNA-binding protein; Provisional

Probab=87.12  E-value=0.3  Score=32.64  Aligned_cols=35  Identities=14%  Similarity=0.382  Sum_probs=21.0

Q ss_pred             CCceeCCCCCCCccccCCCCcccccccCCcccccccccc
Q 019861           69 KNVLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKT  107 (334)
Q Consensus        69 ~~~l~CPiC~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~  107 (334)
                      ...|.||.||..+...-..    =......+.|++||+.
T Consensus        23 ~~~F~CPnCG~~~I~RC~~----CRk~~~~Y~CP~CGF~   57 (59)
T PRK14890         23 AVKFLCPNCGEVIIYRCEK----CRKQSNPYTCPKCGFE   57 (59)
T ss_pred             cCEeeCCCCCCeeEeechh----HHhcCCceECCCCCCc
Confidence            4568999999874432210    0112256888888864

>PF07191 zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807 This family consists of several short, hypothetical bacterial proteins of around 70 residues in length

Probab=87.07  E-value=0.28  Score=34.09  Aligned_cols=28  Identities=36%  Similarity=1.018  Sum_probs=17.1

Q ss_pred             eeCCCCCCCccccCCCCcccccccCCccccccccccccc
Q 019861           72 LACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSG  110 (334)
Q Consensus        72 l~CPiC~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~~~  110 (334)
                      +.||.|+.+|.+.+           +.+.|..|+.-|..
T Consensus         2 ~~CP~C~~~L~~~~-----------~~~~C~~C~~~~~~   29 (70)
T PF07191_consen    2 NTCPKCQQELEWQG-----------GHYHCEACQKDYKK   29 (70)
T ss_dssp             -B-SSS-SBEEEET-----------TEEEETTT--EEEE
T ss_pred             CcCCCCCCccEEeC-----------CEEECcccccccee
Confidence            57999999988866           56777777765544

Members of this family 8 highly conserved cysteine residues. The function of the family is unknown.; PDB: 2JRP_A 2JNE_A.

>PF13240 zinc_ribbon_2: zinc-ribbon domain

Probab=87.05  E-value=0.34  Score=25.96  Aligned_cols=20  Identities=25%  Similarity=0.577  Sum_probs=14.8

Q ss_pred             CCCCCCCccccCCCCcccccccCCccccccccc
Q 019861           74 CPICYKPLTWIGDSSLSIESAAGSSLQCNTCKK  106 (334)
Q Consensus        74 CPiC~~~l~~~~~~~~~~~~~~~~~~~C~~C~~  106 (334)
                      ||.||..+...             ...|+.||.
T Consensus         2 Cp~CG~~~~~~-------------~~fC~~CG~   21 (23)
T PF13240_consen    2 CPNCGAEIEDD-------------AKFCPNCGT   21 (23)
T ss_pred             CcccCCCCCCc-------------CcchhhhCC
Confidence            89999976542             355999985

>TIGR00686 phnA alkylphosphonate utilization operon protein PhnA

Probab=86.98  E-value=0.39  Score=36.27  Aligned_cols=31  Identities=26%  Similarity=0.646  Sum_probs=23.8

Q ss_pred             eeCCCCCCCccccCCCCcccccccCCccccccccccccccc
Q 019861           72 LACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSGVG  112 (334)
Q Consensus        72 l~CPiC~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~~~~~  112 (334)
                      -.||.|++...-..          ...+.|+.|++.|....
T Consensus         3 p~CP~C~seytY~d----------g~~~iCpeC~~EW~~~~   33 (109)
T TIGR00686         3 PPCPKCNSEYTYHD----------GTQLICPSCLYEWNENE   33 (109)
T ss_pred             CcCCcCCCcceEec----------CCeeECccccccccccc
Confidence            46999999765433          25799999999997654

The protein family includes an uncharacterized member designated phnA in Escherichia coli, part of a large operon associated with alkylphosphonate uptake and carbon-phosphorus bond cleavage. This protein is not related to the characterized phosphonoacetate hydrolase designated PhnA by Kulakova, et al. (2001, 1997).

>TIGR03655 anti_R_Lar restriction alleviation protein, Lar family

Probab=86.96  E-value=0.44  Score=31.40  Aligned_cols=37  Identities=16%  Similarity=0.385  Sum_probs=20.7

Q ss_pred             eeCCCCCCCccccCCCCcccccccCCccccccccccccc
Q 019861           72 LACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSG  110 (334)
Q Consensus        72 l~CPiC~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~~~  110 (334)
                      .+||.||+.-..... .. .......++.|.+|+...+.
T Consensus         2 kPCPfCGg~~~~~~~-~~-~~~~~~~~~~C~~Cga~~~~   38 (53)
T TIGR03655         2 KPCPFCGGADVYLRR-GF-DPLDLSHYFECSTCGASGPV   38 (53)
T ss_pred             CCCCCCCCcceeeEe-cc-CCCCCEEEEECCCCCCCccc
Confidence            579999995431110 00 11112245689999977654

Restriction alleviation proteins provide a countermeasure to host cell restriction enzyme defense against foreign DNA such as phage or plasmids. This family consists of homologs to the phage antirestriction protein Lar, and most members belong to phage genomes or prophage regions of bacterial genomes.

>PRK10220 hypothetical protein; Provisional

Probab=86.93  E-value=0.42  Score=36.11  Aligned_cols=31  Identities=19%  Similarity=0.555  Sum_probs=23.9

Q ss_pred             eeCCCCCCCccccCCCCcccccccCCccccccccccccccc
Q 019861           72 LACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSGVG  112 (334)
Q Consensus        72 l~CPiC~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~~~~~  112 (334)
                      -.||.|++...-..          ...+.|+.|++.|...+
T Consensus         4 P~CP~C~seytY~d----------~~~~vCpeC~hEW~~~~   34 (111)
T PRK10220          4 PHCPKCNSEYTYED----------NGMYICPECAHEWNDAE   34 (111)
T ss_pred             CcCCCCCCcceEcC----------CCeEECCcccCcCCccc
Confidence            46999999765433          25799999999997664

>smart00440 ZnF_C2C2 C2C2 Zinc finger

Probab=86.83  E-value=0.27  Score=30.33  Aligned_cols=37  Identities=16%  Similarity=0.328  Sum_probs=21.7

Q ss_pred             eeCCCCCCCccccCCC-CcccccccCCccccccccccc
Q 019861           72 LACPICYKPLTWIGDS-SLSIESAAGSSLQCNTCKKTY  108 (334)
Q Consensus        72 l~CPiC~~~l~~~~~~-~~~~~~~~~~~~~C~~C~~~~  108 (334)
                      ..||.|++........ .-+.+....-++.|.+|++.+
T Consensus         1 ~~Cp~C~~~~a~~~q~Q~RsaDE~mT~fy~C~~C~~~w   38 (40)
T smart00440        1 APCPKCGNREATFFQLQTRSADEPMTVFYVCTKCGHRW   38 (40)
T ss_pred             CcCCCCCCCeEEEEEEcccCCCCCCeEEEEeCCCCCEe
Confidence            3699999865332211 111112234579999999865

Nucleic-acid-binding motif in transcriptional elongation factor TFIIS and RNA polymerases.

>TIGR00595 priA primosomal protein N'

Probab=86.76  E-value=14  Score=36.54  Aligned_cols=15  Identities=20%  Similarity=0.189  Sum_probs=10.8

Q ss_pred             cCCcEEEEEEeccCC
Q 019861          259 RPGGVFVGTTYIVDG  273 (334)
Q Consensus       259 kpgG~lii~~~~~~~  273 (334)
                      ..+|.+++.+.+.+.
T Consensus       369 ~~~g~viiqt~~p~~  383 (505)
T TIGR00595       369 EDPGQVIIQTYNPNH  383 (505)
T ss_pred             CCCCEEEEEeCCCCC
Confidence            356889988877654

All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>TIGR03831 YgiT_finger YgiT-type zinc finger domain

Probab=86.64  E-value=0.37  Score=30.39  Aligned_cols=16  Identities=25%  Similarity=0.590  Sum_probs=12.0

Q ss_pred             cCCccccccccccccc
Q 019861           95 AGSSLQCNTCKKTYSG  110 (334)
Q Consensus        95 ~~~~~~C~~C~~~~~~  110 (334)
                      ....+.|++||..+..
T Consensus        29 ~vp~~~C~~CGE~~~~   44 (46)
T TIGR03831        29 NVPALVCPQCGEEYLD   44 (46)
T ss_pred             CCCccccccCCCEeeC
Confidence            4467889999987644

This domain model describes a small domain with two copies of a putative zinc-binding motif CXXC (usually CXXCG). Most member proteins consist largely of this domain or else carry an additional C-terminal helix-turn-helix domain, resembling that of the phage protein Cro and modeled by pfam01381.

>PF13248 zf-ribbon_3: zinc-ribbon domain

Probab=86.55  E-value=0.39  Score=26.57  Aligned_cols=23  Identities=22%  Similarity=0.541  Sum_probs=16.7

Q ss_pred             ceeCCCCCCCccccCCCCcccccccCCccccccccc
Q 019861           71 VLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKK  106 (334)
Q Consensus        71 ~l~CPiC~~~l~~~~~~~~~~~~~~~~~~~C~~C~~  106 (334)
                      ...||.||..+..             +...|++||.
T Consensus         2 ~~~Cp~Cg~~~~~-------------~~~fC~~CG~   24 (26)
T PF13248_consen    2 EMFCPNCGAEIDP-------------DAKFCPNCGA   24 (26)
T ss_pred             cCCCcccCCcCCc-------------ccccChhhCC
Confidence            3579999995432             4578999985

>PF03119 DNA_ligase_ZBD: NAD-dependent DNA ligase C4 zinc finger domain; InterPro: IPR004149 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=86.46  E-value=0.34  Score=27.37  Aligned_cols=13  Identities=31%  Similarity=0.736  Sum_probs=6.9

Q ss_pred             eCCCCCCCccccC
Q 019861           73 ACPICYKPLTWIG   85 (334)
Q Consensus        73 ~CPiC~~~l~~~~   85 (334)
                      .||+|++.+....
T Consensus         1 ~CP~C~s~l~~~~   13 (28)
T PF03119_consen    1 TCPVCGSKLVREE   13 (28)
T ss_dssp             B-TTT--BEEE-C
T ss_pred             CcCCCCCEeEcCC
Confidence            4999999987544

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the zinc finger domain found in NAD-dependent DNA ligases. DNA ligases catalyse the crucial step of joining the breaks in duplex DNA during DNA replication, repair and recombination, utilizing either ATP or NAD(+) as a cofactor []. This domain is a small zinc binding motif that is presumably DNA binding. It is found only in NAD-dependent DNA ligases. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003911 DNA ligase (NAD+) activity, 0006260 DNA replication, 0006281 DNA repair; PDB: 1DGS_A 1V9P_B 2OWO_A.

>PRK05580 primosome assembly protein PriA; Validated

Probab=86.43  E-value=13  Score=38.26  Aligned_cols=14  Identities=21%  Similarity=0.223  Sum_probs=10.6

Q ss_pred             cCCcEEEEEEeccC
Q 019861          259 RPGGVFVGTTYIVD  272 (334)
Q Consensus       259 kpgG~lii~~~~~~  272 (334)
                      ..+|.+++.+.+.+
T Consensus       537 ~~~g~viiqT~~p~  550 (679)
T PRK05580        537 EKPGEVLIQTYHPE  550 (679)
T ss_pred             CCCCEEEEEeCCCC
Confidence            35789999887764

>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology

Probab=86.39  E-value=2.7  Score=37.98  Aligned_cols=59  Identities=20%  Similarity=0.240  Sum_probs=45.7

Q ss_pred             cEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCC---------CCC-CCCceEEEeCc
Q 019861          180 NIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES---------NFP-KDSIDAVHAGA  239 (334)
Q Consensus       180 ~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~---------~~~-~~~fD~V~~~~  239 (334)
                      +++|+-||.|.+...+...|. ..+.++|+++.+++..+.++....         ... ...+|+|+...
T Consensus         2 ~v~dLFsG~Gg~~~gl~~~G~-~~v~a~e~~~~a~~~~~~N~~~~~~~~Di~~~~~~~~~~~~D~l~~gp   70 (275)
T cd00315           2 RVIDLFAGIGGFRLGLEKAGF-EIVAANEIDKSAAETYEANFPNKLIEGDITKIDEKDFIPDIDLLTGGF   70 (275)
T ss_pred             cEEEEccCcchHHHHHHHcCC-EEEEEEeCCHHHHHHHHHhCCCCCccCccccCchhhcCCCCCEEEeCC
Confidence            689999999999999998874 467899999999998888764321         111 34689999754

Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.

>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=86.35  E-value=17  Score=34.02  Aligned_cols=91  Identities=21%  Similarity=0.220  Sum_probs=67.4

Q ss_pred             CCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCCC-----CC----------CCCceEEEeCcccc
Q 019861          178 GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESN-----FP----------KDSIDAVHAGAAIH  242 (334)
Q Consensus       178 ~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~-----~~----------~~~fD~V~~~~vl~  242 (334)
                      ..+|||.=+|+|.=+..++...+..+++.-|+|+.+++.+++++.....     +.          ...||+|=.    .
T Consensus        53 ~~~v~DalsatGiRgIRya~E~~~~~v~lNDisp~Avelik~Nv~~N~~~~~~v~n~DAN~lm~~~~~~fd~IDi----D  128 (380)
T COG1867          53 PKRVLDALSATGIRGIRYAVETGVVKVVLNDISPKAVELIKENVRLNSGEDAEVINKDANALLHELHRAFDVIDI----D  128 (380)
T ss_pred             CeEEeecccccchhHhhhhhhcCccEEEEccCCHHHHHHHHHHHHhcCcccceeecchHHHHHHhcCCCccEEec----C
Confidence            6799999999998877777766555899999999999999998775511     00          134444421    2


Q ss_pred             CCCCHHHHHHHHHHcccCCcEEEEEEeccC
Q 019861          243 CWSSPSTGVAEISRVLRPGGVFVGTTYIVD  272 (334)
Q Consensus       243 h~~d~~~~L~~i~r~LkpgG~lii~~~~~~  272 (334)
                      =+..|..++....+.++.||.+-++--...
T Consensus       129 PFGSPaPFlDaA~~s~~~~G~l~vTATD~a  158 (380)
T COG1867         129 PFGSPAPFLDAALRSVRRGGLLCVTATDTA  158 (380)
T ss_pred             CCCCCchHHHHHHHHhhcCCEEEEEecccc
Confidence            234577899999999999999888665543

>smart00661 RPOL9 RNA polymerase subunit 9

Probab=86.31  E-value=0.58  Score=30.44  Aligned_cols=34  Identities=18%  Similarity=0.255  Sum_probs=22.5

Q ss_pred             eCCCCCCCccccCCCCcccccccCCcccccccccccccccC
Q 019861           73 ACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSGVGT  113 (334)
Q Consensus        73 ~CPiC~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~~~~~~  113 (334)
                      -||.||..+......       ....+.|+.||..+.....
T Consensus         2 FCp~Cg~~l~~~~~~-------~~~~~vC~~Cg~~~~~~~~   35 (52)
T smart00661        2 FCPKCGNMLIPKEGK-------EKRRFVCRKCGYEEPIEQK   35 (52)
T ss_pred             CCCCCCCccccccCC-------CCCEEECCcCCCeEECCCc
Confidence            399999976554210       1137899999987765533

>PTZ00255 60S ribosomal protein L37a; Provisional

Probab=86.27  E-value=0.35  Score=35.47  Aligned_cols=32  Identities=34%  Similarity=0.563  Sum_probs=23.1

Q ss_pred             CceeCCCCCCCccccCCCCcccccccCCccccccccccccc
Q 019861           70 NVLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSG  110 (334)
Q Consensus        70 ~~l~CPiC~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~~~  110 (334)
                      ....||.|+.......         ..++|.|..|+..+..
T Consensus        35 a~y~CpfCgk~~vkR~---------a~GIW~C~~C~~~~AG   66 (90)
T PTZ00255         35 AKYFCPFCGKHAVKRQ---------AVGIWRCKGCKKTVAG   66 (90)
T ss_pred             CCccCCCCCCCceeee---------eeEEEEcCCCCCEEeC
Confidence            4588999998543322         3379999999987743

>COG1326 Uncharacterized archaeal Zn-finger protein [General function prediction only]

Probab=86.24  E-value=0.29  Score=41.00  Aligned_cols=37  Identities=16%  Similarity=0.471  Sum_probs=22.5

Q ss_pred             ceeCCCCCCCccccCCCCcccc-cccCCcccccccccccccc
Q 019861           71 VLACPICYKPLTWIGDSSLSIE-SAAGSSLQCNTCKKTYSGV  111 (334)
Q Consensus        71 ~l~CPiC~~~l~~~~~~~~~~~-~~~~~~~~C~~C~~~~~~~  111 (334)
                      -+.||.|+.. .....   -.. ......++|.+||.+++..
T Consensus         6 y~~Cp~Cg~e-ev~hE---Vik~~g~~~lvrC~eCG~V~~~~   43 (201)
T COG1326           6 YIECPSCGSE-EVSHE---VIKERGREPLVRCEECGTVHPAI   43 (201)
T ss_pred             EEECCCCCcc-hhhHH---HHHhcCCceEEEccCCCcEeece
Confidence            4789999942 22110   011 1123579999999999664

>PF08792 A2L_zn_ribbon: A2L zinc ribbon domain; InterPro: IPR014900 This zinc ribbon protein is found associated with some viral A2L transcription factors []

Probab=86.20  E-value=0.51  Score=27.77  Aligned_cols=30  Identities=13%  Similarity=0.241  Sum_probs=22.8

Q ss_pred             ceeCCCCCCCccccCCCCcccccccCCcccccccccccc
Q 019861           71 VLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYS  109 (334)
Q Consensus        71 ~l~CPiC~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~~  109 (334)
                      ...|+.|++++....         ...+..|..|+..++
T Consensus         3 ~~~C~~C~~~~i~~~---------~~~~~~C~~Cg~~~~   32 (33)
T PF08792_consen    3 LKKCSKCGGNGIVNK---------EDDYEVCIFCGSSFP   32 (33)
T ss_pred             ceEcCCCCCCeEEEe---------cCCeEEcccCCcEee
Confidence            357999999876633         226899999998774

>PF14740 DUF4471: Domain of unknown function (DUF4471)

Probab=86.16  E-value=1.4  Score=39.87  Aligned_cols=67  Identities=16%  Similarity=0.349  Sum_probs=45.9

Q ss_pred             CCCceEEEeCccccCCCCHHHHHHHHHHcccCCcEEEEEEeccCCCCCchHHHHHHHHHhhhhcCccCCCCHHHHHHHHH
Q 019861          229 KDSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLCR  308 (334)
Q Consensus       229 ~~~fD~V~~~~vl~h~~d~~~~L~~i~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~l~~ll~  308 (334)
                      .+.||+|+.....-|+-.|.     +.++++|||.|++.+.-.     +......-...+           .+.+.++++
T Consensus       220 ~~~Fd~ifvs~s~vh~L~p~-----l~~~~a~~A~LvvEtaKf-----mvdLrKEq~~~F-----------~~kv~eLA~  278 (289)
T PF14740_consen  220 QNFFDLIFVSCSMVHFLKPE-----LFQALAPDAVLVVETAKF-----MVDLRKEQLQEF-----------VKKVKELAK  278 (289)
T ss_pred             cCCCCEEEEhhhhHhhcchH-----HHHHhCCCCEEEEEcchh-----heeCCHHHHHHH-----------HHHHHHHHH
Confidence            36799999988777766664     777899999999988632     111111111221           457899999


Q ss_pred             hCCCcEEE
Q 019861          309 ACGLVDFK  316 (334)
Q Consensus       309 ~~Gf~~v~  316 (334)
                      ++||+.+.
T Consensus       279 ~aG~~p~~  286 (289)
T PF14740_consen  279 AAGFKPVT  286 (289)
T ss_pred             HCCCcccc
Confidence            99998654

>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2

Probab=85.96  E-value=3.7  Score=38.88  Aligned_cols=90  Identities=18%  Similarity=0.203  Sum_probs=60.9

Q ss_pred             CCcEEEECCCcCHHHHHHHHc-CCCCeEEEEeCCHHHHHHHHHHHhcCCC---------------C--CCCCceEEEeCc
Q 019861          178 GGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQQESN---------------F--PKDSIDAVHAGA  239 (334)
Q Consensus       178 ~~~vLDiGcG~G~~~~~l~~~-~~~~~v~giD~s~~~~~~a~~~~~~~~~---------------~--~~~~fD~V~~~~  239 (334)
                      +.++||.=+|+|-=+..++.. .....|+.-|+|+.+++..++++.....               +  ....||+|=.. 
T Consensus        50 ~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N~~~~~~~~v~~~DAn~ll~~~~~~fD~IDlD-  128 (377)
T PF02005_consen   50 PIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELNGLEDERIEVSNMDANVLLYSRQERFDVIDLD-  128 (377)
T ss_dssp             -EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHCT-SGCCEEEEES-HHHHHCHSTT-EEEEEE--
T ss_pred             CceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhccccCceEEEehhhHHHHhhhccccCCEEEeC-
Confidence            468999999999766666655 3235899999999999999988653321               1  34567766532 


Q ss_pred             cccCCCCHHHHHHHHHHcccCCcEEEEEEecc
Q 019861          240 AIHCWSSPSTGVAEISRVLRPGGVFVGTTYIV  271 (334)
Q Consensus       240 vl~h~~d~~~~L~~i~r~LkpgG~lii~~~~~  271 (334)
                         -+..|..+|..+.+.++.||.|.++.-..
T Consensus       129 ---PfGSp~pfldsA~~~v~~gGll~vTaTD~  157 (377)
T PF02005_consen  129 ---PFGSPAPFLDSALQAVKDGGLLCVTATDT  157 (377)
T ss_dssp             ----SS--HHHHHHHHHHEEEEEEEEEEE--H
T ss_pred             ---CCCCccHhHHHHHHHhhcCCEEEEecccc
Confidence               23467899999999999999999876543

1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.

>TIGR00280 L37a ribosomal protein L37a

Probab=85.92  E-value=0.33  Score=35.63  Aligned_cols=32  Identities=25%  Similarity=0.630  Sum_probs=23.1

Q ss_pred             CceeCCCCCCCccccCCCCcccccccCCccccccccccccc
Q 019861           70 NVLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSG  110 (334)
Q Consensus        70 ~~l~CPiC~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~~~  110 (334)
                      ....||.|+.......         ..++|.|..|+..+..
T Consensus        34 a~y~CpfCgk~~vkR~---------a~GIW~C~~C~~~~AG   65 (91)
T TIGR00280        34 AKYVCPFCGKKTVKRG---------STGIWTCRKCGAKFAG   65 (91)
T ss_pred             cCccCCCCCCCceEEE---------eeEEEEcCCCCCEEeC
Confidence            4588999998543322         3479999999987743

This model finds eukaryotic ribosomal protein L37a and its archaeal orthologs. The nomeclature is tricky because eukaryotes have proteins called both L37 and L37a.

>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised

Probab=85.27  E-value=1.5  Score=38.40  Aligned_cols=49  Identities=20%  Similarity=0.185  Sum_probs=31.2

Q ss_pred             HHHcccCCCCC--CcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHH
Q 019861          168 LMKGYLKPVLG--GNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCY  218 (334)
Q Consensus       168 ~l~~~l~~~~~--~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~  218 (334)
                      .+.+.++..++  .+|||.-+|-|.-+..++..|.  +|+++|-|+.+....+
T Consensus        64 ~l~kA~Glk~~~~~~VLDaTaGLG~Da~vlA~~G~--~V~~lErspvia~Ll~  114 (234)
T PF04445_consen   64 PLAKAVGLKPGMRPSVLDATAGLGRDAFVLASLGC--KVTGLERSPVIAALLK  114 (234)
T ss_dssp             HHHHHTT-BTTB---EEETT-TTSHHHHHHHHHT----EEEEE--HHHHHHHH
T ss_pred             HHHHHhCCCCCCCCEEEECCCcchHHHHHHHccCC--eEEEEECCHHHHHHHH
Confidence            45555554444  4899999999999998888775  9999999996555444

; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.

>PRK00432 30S ribosomal protein S27ae; Validated

Probab=84.79  E-value=0.54  Score=30.58  Aligned_cols=27  Identities=22%  Similarity=0.362  Sum_probs=18.8

Q ss_pred             eeCCCCCCCccccCCCCcccccccCCccccccccccc
Q 019861           72 LACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTY  108 (334)
Q Consensus        72 l~CPiC~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~  108 (334)
                      --||.||+. ....         ....+.|..||..+
T Consensus        21 ~fCP~Cg~~-~m~~---------~~~r~~C~~Cgyt~   47 (50)
T PRK00432         21 KFCPRCGSG-FMAE---------HLDRWHCGKCGYTE   47 (50)
T ss_pred             CcCcCCCcc-hhec---------cCCcEECCCcCCEE
Confidence            369999986 2222         12679999999765

>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase

Probab=84.48  E-value=14  Score=33.88  Aligned_cols=126  Identities=8%  Similarity=0.087  Sum_probs=66.3

Q ss_pred             HHcccCCCCCCcEEEECCCc-CHHH-HHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCC-CC---C--CCCceEEEeCcc
Q 019861          169 MKGYLKPVLGGNIIDASCGS-GLFS-RIFAKSGLFSLVVALDYSENMLKQCYEFVQQES-NF---P--KDSIDAVHAGAA  240 (334)
Q Consensus       169 l~~~l~~~~~~~vLDiGcG~-G~~~-~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~-~~---~--~~~fD~V~~~~v  240 (334)
                      ....++..++.+|+-+|+|. |... ..+...+ ...++.+|.++...+...+.+.... ++   .  -...|+|+..-.
T Consensus       169 a~~~~~~l~~~~V~ViGaG~iG~~~a~~L~~~g-~~~V~v~~r~~~ra~~la~~~g~~~~~~~~~~~~l~~aDvVi~at~  247 (311)
T cd05213         169 AEKIFGNLKGKKVLVIGAGEMGELAAKHLAAKG-VAEITIANRTYERAEELAKELGGNAVPLDELLELLNEADVVISATG  247 (311)
T ss_pred             HHHHhCCccCCEEEEECcHHHHHHHHHHHHHcC-CCEEEEEeCCHHHHHHHHHHcCCeEEeHHHHHHHHhcCCEEEECCC
Confidence            33333445688999999976 4332 3333333 2478999999775543333332210 11   0  135799998765


Q ss_pred             ccCCCCHHHHHHHHHHcccCCcEEEEEEeccCCCCCchHHHHHHHHHhhhhcCccCCCCHHHHHHHHHh
Q 019861          241 IHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLCRA  309 (334)
Q Consensus       241 l~h~~d~~~~L~~i~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~l~~ll~~  309 (334)
                      -.+.   ...+..+.+....+|.+++-..+....   .+..       .. ......++.++|+++.++
T Consensus       248 ~~~~---~~~~~~~~~~~~~~~~~viDlavPrdi---~~~v-------~~-l~~v~l~~vDdl~~~~~~  302 (311)
T cd05213         248 APHY---AKIVERAMKKRSGKPRLIVDLAVPRDI---EPEV-------GE-LEGVRLYTIDDLEEVVEE  302 (311)
T ss_pred             CCch---HHHHHHHHhhCCCCCeEEEEeCCCCCC---chhh-------cc-CCCcEEEEHHHhHHHHHH
Confidence            4432   333444433333346666644443222   1110       00 124567888999888765

Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,

>PRK03976 rpl37ae 50S ribosomal protein L37Ae; Reviewed

Probab=84.47  E-value=0.43  Score=35.03  Aligned_cols=32  Identities=22%  Similarity=0.612  Sum_probs=23.0

Q ss_pred             CceeCCCCCCCccccCCCCcccccccCCccccccccccccc
Q 019861           70 NVLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSG  110 (334)
Q Consensus        70 ~~l~CPiC~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~~~  110 (334)
                      ....||.|+.......         ..++|.|..|+..+..
T Consensus        35 a~y~CpfCgk~~vkR~---------a~GIW~C~~C~~~~AG   66 (90)
T PRK03976         35 AKHVCPVCGRPKVKRV---------GTGIWECRKCGAKFAG   66 (90)
T ss_pred             cCccCCCCCCCceEEE---------EEEEEEcCCCCCEEeC
Confidence            4588999987543322         3379999999987743

>smart00659 RPOLCX RNA polymerase subunit CX

Probab=84.36  E-value=0.77  Score=28.99  Aligned_cols=28  Identities=14%  Similarity=0.399  Sum_probs=20.5

Q ss_pred             ceeCCCCCCCccccCCCCcccccccCCccccccccccc
Q 019861           71 VLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTY  108 (334)
Q Consensus        71 ~l~CPiC~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~  108 (334)
                      .+.|..||.......          ....+|+.||+--
T Consensus         2 ~Y~C~~Cg~~~~~~~----------~~~irC~~CG~rI   29 (44)
T smart00659        2 IYICGECGRENEIKS----------KDVVRCRECGYRI   29 (44)
T ss_pred             EEECCCCCCEeecCC----------CCceECCCCCceE
Confidence            478999999755432          2579999999754

present in RNA polymerase I, II and III

>KOG3507 consensus DNA-directed RNA polymerase, subunit RPB7

Probab=84.20  E-value=1.1  Score=29.80  Aligned_cols=32  Identities=19%  Similarity=0.388  Sum_probs=24.7

Q ss_pred             cCCCceeCCCCCCCccccCCCCcccccccCCccccccccccc
Q 019861           67 TSKNVLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTY  108 (334)
Q Consensus        67 ~~~~~l~CPiC~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~  108 (334)
                      +....+.|--|+..+.....          ...+|..||+..
T Consensus        16 ~~~miYiCgdC~~en~lk~~----------D~irCReCG~RI   47 (62)
T KOG3507|consen   16 TATMIYICGDCGQENTLKRG----------DVIRCRECGYRI   47 (62)
T ss_pred             cccEEEEeccccccccccCC----------CcEehhhcchHH
Confidence            34567899999998766542          689999999754

0 [Transcription]

>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised

Probab=84.18  E-value=1.5  Score=41.48  Aligned_cols=55  Identities=7%  Similarity=-0.111  Sum_probs=39.6

Q ss_pred             HHHcccCCCCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcC
Q 019861          168 LMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQE  224 (334)
Q Consensus       168 ~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~  224 (334)
                      ...+.++..++.+||-|.+|.-..+.. ...+| .+|++||+|+......+-++...
T Consensus        26 vD~~aL~i~~~d~vl~ItSaG~N~L~y-L~~~P-~~I~aVDlNp~Q~aLleLKlAai   80 (380)
T PF11899_consen   26 VDMEALNIGPDDRVLTITSAGCNALDY-LLAGP-KRIHAVDLNPAQNALLELKLAAI   80 (380)
T ss_pred             HHHHHhCCCCCCeEEEEccCCchHHHH-HhcCC-ceEEEEeCCHHHHHHHHHHHHHH
Confidence            345566777889999998875554544 55554 59999999998887776555443

This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.

>cd08230 glucose_DH Glucose dehydrogenase

Probab=84.14  E-value=10  Score=35.31  Aligned_cols=87  Identities=15%  Similarity=0.088  Sum_probs=53.6

Q ss_pred             CCCCcEEEECCCc-CHHHHHHHHcCCCCeEEEEeC---CHHHHHHHHHHHhcCC-----CC----CCCCceEEEeCcccc
Q 019861          176 VLGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDY---SENMLKQCYEFVQQES-----NF----PKDSIDAVHAGAAIH  242 (334)
Q Consensus       176 ~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~giD~---s~~~~~~a~~~~~~~~-----~~----~~~~fD~V~~~~vl~  242 (334)
                      .++.+||=+|+|. |.++..+++.. ..++++++.   ++.-++.+++.-....     .+    ..+.+|+|+-.-   
T Consensus       171 ~~g~~vlI~G~G~vG~~a~q~ak~~-G~~vi~~~~~~~~~~~~~~~~~~Ga~~v~~~~~~~~~~~~~~~~d~vid~~---  246 (355)
T cd08230         171 WNPRRALVLGAGPIGLLAALLLRLR-GFEVYVLNRRDPPDPKADIVEELGATYVNSSKTPVAEVKLVGEFDLIIEAT---  246 (355)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHc-CCeEEEEecCCCCHHHHHHHHHcCCEEecCCccchhhhhhcCCCCEEEECc---
Confidence            4578999999865 55566666553 348999986   5666666654211100     00    113467666543   


Q ss_pred             CCCCHHHHHHHHHHcccCCcEEEEEEe
Q 019861          243 CWSSPSTGVAEISRVLRPGGVFVGTTY  269 (334)
Q Consensus       243 h~~d~~~~L~~i~r~LkpgG~lii~~~  269 (334)
                        ..+ ..+.+..+.|++||.+++...
T Consensus       247 --g~~-~~~~~~~~~l~~~G~~v~~G~  270 (355)
T cd08230         247 --GVP-PLAFEALPALAPNGVVILFGV  270 (355)
T ss_pred             --CCH-HHHHHHHHHccCCcEEEEEec
Confidence              222 367888999999999876543

Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai

>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase

Probab=83.39  E-value=11  Score=34.99  Aligned_cols=90  Identities=18%  Similarity=0.104  Sum_probs=56.1

Q ss_pred             CCCCCCcEEEECCCc-CHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcC-----C-C--------CCCCCceEEEeC
Q 019861          174 KPVLGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQE-----S-N--------FPKDSIDAVHAG  238 (334)
Q Consensus       174 ~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~-----~-~--------~~~~~fD~V~~~  238 (334)
                      ...++.+||-.|+|. |..+..+++.....+++++|.++...+.+++.-...     . .        .....+|+|+-.
T Consensus       173 ~~~~g~~VlV~G~g~vG~~a~~~ak~~G~~~Vi~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~i~~~~~~~g~d~vid~  252 (358)
T TIGR03451       173 GVKRGDSVAVIGCGGVGDAAIAGAALAGASKIIAVDIDDRKLEWAREFGATHTVNSSGTDPVEAIRALTGGFGADVVIDA  252 (358)
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCceEEcCCCcCHHHHHHHHhCCCCCCEEEEC
Confidence            345678999998754 455555665532225999999998888876531100     0 0        112347877643


Q ss_pred             ccccCCCCHHHHHHHHHHcccCCcEEEEEEe
Q 019861          239 AAIHCWSSPSTGVAEISRVLRPGGVFVGTTY  269 (334)
Q Consensus       239 ~vl~h~~d~~~~L~~i~r~LkpgG~lii~~~  269 (334)
                           ...+ ..+....+.|++||++++.-.
T Consensus       253 -----~g~~-~~~~~~~~~~~~~G~iv~~G~  277 (358)
T TIGR03451       253 -----VGRP-ETYKQAFYARDLAGTVVLVGV  277 (358)
T ss_pred             -----CCCH-HHHHHHHHHhccCCEEEEECC
Confidence                 3333 357778889999999887543

Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.

>KOG1253 consensus tRNA methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=83.08  E-value=2  Score=41.53  Aligned_cols=92  Identities=23%  Similarity=0.228  Sum_probs=68.3

Q ss_pred             CCCCcEEEECCCcCHHHHHHHHcCC-CCeEEEEeCCHHHHHHHHHHHhcCC-------------------CCCCCCceEE
Q 019861          176 VLGGNIIDASCGSGLFSRIFAKSGL-FSLVVALDYSENMLKQCYEFVQQES-------------------NFPKDSIDAV  235 (334)
Q Consensus       176 ~~~~~vLDiGcG~G~~~~~l~~~~~-~~~v~giD~s~~~~~~a~~~~~~~~-------------------~~~~~~fD~V  235 (334)
                      .++.+|||.=|++|.-+...+...+ -..+++.|.++..++..+++.....                   +-....||+|
T Consensus       108 ~~~l~vLealsAtGlrslRya~El~~v~~v~AnD~~~~aV~~i~~Nv~~N~v~~ive~~~~DA~~lM~~~~~~~~~FDvI  187 (525)
T KOG1253|consen  108 EKSLRVLEALSATGLRSLRYAKELPGVRQVVANDLNENAVTSIQRNVELNGVEDIVEPHHSDANVLMYEHPMVAKFFDVI  187 (525)
T ss_pred             cCcchHHHHhhhhhHHHHHHHHHhcchhhhcccCCCHHHHHHHHhhhhhcCchhhcccccchHHHHHHhccccccccceE
Confidence            3467999999999987776666543 3578999999999998887765431                   1224678888


Q ss_pred             EeCccccCCCCHHHHHHHHHHcccCCcEEEEEEecc
Q 019861          236 HAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIV  271 (334)
Q Consensus       236 ~~~~vl~h~~d~~~~L~~i~r~LkpgG~lii~~~~~  271 (334)
                      -..    -+..+..+|+...+.++.||.|.++.-..
T Consensus       188 DLD----PyGs~s~FLDsAvqav~~gGLL~vT~TD~  219 (525)
T KOG1253|consen  188 DLD----PYGSPSPFLDSAVQAVRDGGLLCVTCTDM  219 (525)
T ss_pred             ecC----CCCCccHHHHHHHHHhhcCCEEEEEecch
Confidence            642    23456789999999999999999866543

>PF06677 Auto_anti-p27: Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27); InterPro: IPR009563 The proteins in this entry are functionally uncharacterised and include several proteins that characterise Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27)

Probab=82.96  E-value=0.76  Score=28.52  Aligned_cols=24  Identities=33%  Similarity=0.713  Sum_probs=17.7

Q ss_pred             eeCCCCCCCccccCCCCcccccccCCcccccccc
Q 019861           72 LACPICYKPLTWIGDSSLSIESAAGSSLQCNTCK  105 (334)
Q Consensus        72 l~CPiC~~~l~~~~~~~~~~~~~~~~~~~C~~C~  105 (334)
                      -.||.|+.++.....          +...|+.|+
T Consensus        18 ~~Cp~C~~PL~~~k~----------g~~~Cv~C~   41 (41)
T PF06677_consen   18 EHCPDCGTPLMRDKD----------GKIYCVSCG   41 (41)
T ss_pred             CccCCCCCeeEEecC----------CCEECCCCC
Confidence            469999999887321          457898885

It is thought that the potential association of anti-p27 with anti-centromere antibodies suggests that autoantigen p27 might play a role in mitosis [].

>KOG1227 consensus Putative methyltransferase [General function prediction only]

Probab=82.93  E-value=1.5  Score=39.66  Aligned_cols=88  Identities=20%  Similarity=0.330  Sum_probs=61.4

Q ss_pred             CCcEEEECCCcCHHHH-HHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCC--------------CCCCCCceEEEeCcccc
Q 019861          178 GGNIIDASCGSGLFSR-IFAKSGLFSLVVALDYSENMLKQCYEFVQQES--------------NFPKDSIDAVHAGAAIH  242 (334)
Q Consensus       178 ~~~vLDiGcG~G~~~~-~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~--------------~~~~~~fD~V~~~~vl~  242 (334)
                      +..|+|+=+|-|+|+. .+..++. ..|+++|.++..++..++.++...              +-++...|-|....   
T Consensus       195 ~eviVDLYAGIGYFTlpflV~agA-k~V~A~EwNp~svEaLrR~~~~N~V~~r~~i~~gd~R~~~~~~~AdrVnLGL---  270 (351)
T KOG1227|consen  195 GEVIVDLYAGIGYFTLPFLVTAGA-KTVFACEWNPWSVEALRRNAEANNVMDRCRITEGDNRNPKPRLRADRVNLGL---  270 (351)
T ss_pred             cchhhhhhcccceEEeehhhccCc-cEEEEEecCHHHHHHHHHHHHhcchHHHHHhhhccccccCccccchheeecc---
Confidence            4799999999999988 7777774 689999999999999887765432              23456667666554   


Q ss_pred             CCCCHHHHHHHHHHcccCC-c-EEEEEEec
Q 019861          243 CWSSPSTGVAEISRVLRPG-G-VFVGTTYI  270 (334)
Q Consensus       243 h~~d~~~~L~~i~r~Lkpg-G-~lii~~~~  270 (334)
                       +|.-++-+-....+|+|. | .+-+....
T Consensus       271 -lPSse~~W~~A~k~Lk~eggsilHIHenV  299 (351)
T KOG1227|consen  271 -LPSSEQGWPTAIKALKPEGGSILHIHENV  299 (351)
T ss_pred             -ccccccchHHHHHHhhhcCCcEEEEeccc
Confidence             344444455566778774 4 44444433

>PRK00415 rps27e 30S ribosomal protein S27e; Reviewed

Probab=82.77  E-value=0.89  Score=30.51  Aligned_cols=40  Identities=20%  Similarity=0.357  Sum_probs=29.0

Q ss_pred             ccCCCceeCCCCCCCccccCCCCcccccccCCcccccccccccccccC
Q 019861           66 STSKNVLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSGVGT  113 (334)
Q Consensus        66 ~~~~~~l~CPiC~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~~~~~~  113 (334)
                      .+......||-|+......++        ....+.|..||..-..+.|
T Consensus         6 ~S~F~~VkCp~C~n~q~vFsh--------a~t~V~C~~Cg~~L~~PtG   45 (59)
T PRK00415          6 RSRFLKVKCPDCGNEQVVFSH--------ASTVVRCLVCGKTLAEPTG   45 (59)
T ss_pred             CCeEEEEECCCCCCeEEEEec--------CCcEEECcccCCCcccCCC
Confidence            345566889999997665553        3367999999988766644

>PF03604 DNA_RNApol_7kD: DNA directed RNA polymerase, 7 kDa subunit; InterPro: IPR006591 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates

Probab=82.68  E-value=1.1  Score=26.08  Aligned_cols=26  Identities=19%  Similarity=0.548  Sum_probs=16.6

Q ss_pred             eCCCCCCCccccCCCCcccccccCCccccccccccc
Q 019861           73 ACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTY  108 (334)
Q Consensus        73 ~CPiC~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~  108 (334)
                      .|..||.......          ....+|+.||+-.
T Consensus         2 ~C~~Cg~~~~~~~----------~~~irC~~CG~RI   27 (32)
T PF03604_consen    2 ICGECGAEVELKP----------GDPIRCPECGHRI   27 (32)
T ss_dssp             BESSSSSSE-BST----------SSTSSBSSSS-SE
T ss_pred             CCCcCCCeeEcCC----------CCcEECCcCCCeE
Confidence            5888888655332          2568999998744

Each class of RNA polymerase is assembled from 9 to 15 different polypeptides. Rbp10 (RNA polymerase CX) is a domain found in RNA polymerase subunit 10; present in RNA polymerase I, II and III.; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 2PMZ_Z 3HKZ_X 2NVX_L 3S1Q_L 2JA6_L 3S17_L 3HOW_L 3HOV_L 3PO2_L 3HOZ_L ....

>KOG1088 consensus Uncharacterized conserved protein [Function unknown]

Probab=82.33  E-value=0.61  Score=35.66  Aligned_cols=26  Identities=12%  Similarity=0.146  Sum_probs=23.1

Q ss_pred             cCCcccccccccccccccCccccccc
Q 019861           95 AGSSLQCNTCKKTYSGVGTHFDMTAA  120 (334)
Q Consensus        95 ~~~~~~C~~C~~~~~~~~~~~~~~~~  120 (334)
                      ..+.+.|+.||++|+..+|++|.+-.
T Consensus        95 ~EG~l~CpetG~vfpI~~GIPNMLL~  120 (124)
T KOG1088|consen   95 IEGELVCPETGRVFPISDGIPNMLLS  120 (124)
T ss_pred             ccceEecCCCCcEeecccCCcccccC
Confidence            55789999999999999999998754

>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase

Probab=82.00  E-value=13  Score=33.27  Aligned_cols=88  Identities=19%  Similarity=0.123  Sum_probs=54.3

Q ss_pred             CCCCcEEEECCCc-CHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcC----CC--------CCCCCceEEEeCcccc
Q 019861          176 VLGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQE----SN--------FPKDSIDAVHAGAAIH  242 (334)
Q Consensus       176 ~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~----~~--------~~~~~fD~V~~~~vl~  242 (334)
                      .++.+||=+|+|. |.++..+++......++++|.++.-++.+++.-...    ..        .....+|+|+-.    
T Consensus       119 ~~g~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~~~~~r~~~a~~~Ga~~~i~~~~~~~~~~~~~~~~g~d~vid~----  194 (280)
T TIGR03366       119 LKGRRVLVVGAGMLGLTAAAAAAAAGAARVVAADPSPDRRELALSFGATALAEPEVLAERQGGLQNGRGVDVALEF----  194 (280)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCCcEecCchhhHHHHHHHhCCCCCCEEEEC----
Confidence            4678999998864 445555555532224888998888777776531100    00        012347777643    


Q ss_pred             CCCCHHHHHHHHHHcccCCcEEEEEEe
Q 019861          243 CWSSPSTGVAEISRVLRPGGVFVGTTY  269 (334)
Q Consensus       243 h~~d~~~~L~~i~r~LkpgG~lii~~~  269 (334)
                       ...+ ..++...+.|+++|++++.-.
T Consensus       195 -~G~~-~~~~~~~~~l~~~G~iv~~G~  219 (280)
T TIGR03366       195 -SGAT-AAVRACLESLDVGGTAVLAGS  219 (280)
T ss_pred             -CCCh-HHHHHHHHHhcCCCEEEEecc
Confidence             2223 357788999999999887653

This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.

>PF09538 FYDLN_acid: Protein of unknown function (FYDLN_acid); InterPro: IPR012644 Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues

Probab=81.81  E-value=0.91  Score=34.75  Aligned_cols=32  Identities=16%  Similarity=0.452  Sum_probs=22.9

Q ss_pred             CceeCCCCCCCccccCCCCcccccccCCcccccccccccccc
Q 019861           70 NVLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSGV  111 (334)
Q Consensus        70 ~~l~CPiC~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~~~~  111 (334)
                      .+..||.||....-..          ..-..||.||..|...
T Consensus         8 tKR~Cp~CG~kFYDLn----------k~PivCP~CG~~~~~~   39 (108)
T PF09538_consen    8 TKRTCPSCGAKFYDLN----------KDPIVCPKCGTEFPPE   39 (108)
T ss_pred             CcccCCCCcchhccCC----------CCCccCCCCCCccCcc
Confidence            3568999999753222          1347799999998776

The function of members of this family is unknown.

>KOG2782 consensus Putative SAM dependent methyltransferases [General function prediction only]

Probab=81.44  E-value=3.4  Score=35.69  Aligned_cols=85  Identities=15%  Similarity=0.144  Sum_probs=64.7

Q ss_pred             HHHHHHcccCCCCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcC--------------------
Q 019861          165 EFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQE--------------------  224 (334)
Q Consensus       165 ~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~--------------------  224 (334)
                      +.+....++.+.++...+|+--|.|..+..+.++.+...++++|-+|-+.+.|.....+.                    
T Consensus        31 m~devl~~lspv~g~sf~DmTfGagGHt~~ilqk~se~k~yalDrDP~A~~La~~~s~el~~~~l~a~Lg~Fs~~~~l~~  110 (303)
T KOG2782|consen   31 MLDEVLDILSPVRGRSFVDMTFGAGGHTSSILQKHSELKNYALDRDPVARKLAHFHSDELMHPTLKAVLGNFSYIKSLIA  110 (303)
T ss_pred             ehhhHHHHcCCCCCceEEEEeccCCcchHHHHHhCcHhhhhhhccChHHHHHHHHhhHhhcchhHHHHHhhhHHHHHHHH
Confidence            345677888889999999999999999999999988888999999998877776543211                    


Q ss_pred             -CCCCCCCceEEEeCccccCC--CCHHH
Q 019861          225 -SNFPKDSIDAVHAGAAIHCW--SSPST  249 (334)
Q Consensus       225 -~~~~~~~fD~V~~~~vl~h~--~d~~~  249 (334)
                       ..+.+..+|.|++......+  .+|+.
T Consensus       111 ~~gl~~~~vDGiLmDlGcSSMQ~d~peR  138 (303)
T KOG2782|consen  111 DTGLLDVGVDGILMDLGCSSMQVDNPER  138 (303)
T ss_pred             HhCCCcCCcceEEeecCccccccCCccc
Confidence             13567899999987655443  35543

>COG4306 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=81.42  E-value=0.83  Score=35.35  Aligned_cols=44  Identities=16%  Similarity=0.395  Sum_probs=27.7

Q ss_pred             CceeCCCCCCCcccc--CCCCcccccccCCcccccccccccccccC
Q 019861           70 NVLACPICYKPLTWI--GDSSLSIESAAGSSLQCNTCKKTYSGVGT  113 (334)
Q Consensus        70 ~~l~CPiC~~~l~~~--~~~~~~~~~~~~~~~~C~~C~~~~~~~~~  113 (334)
                      ....||+|..+..-.  .+.-+..+-....--.|.+||+.|++.+.
T Consensus        38 ti~qcp~csasirgd~~vegvlglg~dye~psfchncgs~fpwter   83 (160)
T COG4306          38 TITQCPICSASIRGDYYVEGVLGLGGDYEPPSFCHNCGSRFPWTER   83 (160)
T ss_pred             HHhcCCccCCcccccceeeeeeccCCCCCCcchhhcCCCCCCcHHH
Confidence            467899999865322  21122233334455789999999988643

>PF03811 Zn_Tnp_IS1: InsA N-terminal domain; InterPro: IPR003220 Insertion elements are mobile elements in DNA, usually encoding proteins required for transposition, for example transposases

Probab=81.34  E-value=1.3  Score=26.66  Aligned_cols=29  Identities=21%  Similarity=0.628  Sum_probs=19.0

Q ss_pred             eeCCCCCCCc--cccCCCCcccccccCCcccccccc
Q 019861           72 LACPICYKPL--TWIGDSSLSIESAAGSSLQCNTCK  105 (334)
Q Consensus        72 l~CPiC~~~l--~~~~~~~~~~~~~~~~~~~C~~C~  105 (334)
                      +.||.|++..  ...+.     .....+.++|..|+
T Consensus         6 v~CP~C~s~~~v~k~G~-----~~~G~qryrC~~C~   36 (36)
T PF03811_consen    6 VHCPRCQSTEGVKKNGK-----SPSGHQRYRCKDCR   36 (36)
T ss_pred             eeCCCCCCCCcceeCCC-----CCCCCEeEecCcCC
Confidence            6799999965  33331     11244689999885

Protein InsA is absolutely required for transposition of insertion element 1. This entry represents a short zinc binding domain found in IS1 InsA family protein. It is found at the N terminus of the protein and may be a DNA-binding domain.; GO: 0006313 transposition, DNA-mediated

>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy)

Probab=81.25  E-value=12  Score=35.92  Aligned_cols=87  Identities=10%  Similarity=-0.008  Sum_probs=54.1

Q ss_pred             CCCCcEEEECCCc-CHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCCCCC--CCCceEEEeCccccCCCCHHHHHH
Q 019861          176 VLGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFP--KDSIDAVHAGAAIHCWSSPSTGVA  252 (334)
Q Consensus       176 ~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~--~~~fD~V~~~~vl~h~~d~~~~L~  252 (334)
                      .++.+|+=+|+|. |......++.. ..+|+++|.++...+.|+..-.......  -..+|+|+..-     ..+..+-.
T Consensus       200 l~GktVvViG~G~IG~~va~~ak~~-Ga~ViV~d~d~~R~~~A~~~G~~~~~~~e~v~~aDVVI~at-----G~~~~i~~  273 (413)
T cd00401         200 IAGKVAVVAGYGDVGKGCAQSLRGQ-GARVIVTEVDPICALQAAMEGYEVMTMEEAVKEGDIFVTTT-----GNKDIITG  273 (413)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHC-CCEEEEEECChhhHHHHHhcCCEEccHHHHHcCCCEEEECC-----CCHHHHHH
Confidence            4688999999997 55444444332 3489999999887777664211000000  13468887642     34443333


Q ss_pred             HHHHcccCCcEEEEEE
Q 019861          253 EISRVLRPGGVFVGTT  268 (334)
Q Consensus       253 ~i~r~LkpgG~lii~~  268 (334)
                      +..+.+++||+++...
T Consensus       274 ~~l~~mk~GgilvnvG  289 (413)
T cd00401         274 EHFEQMKDGAIVCNIG  289 (413)
T ss_pred             HHHhcCCCCcEEEEeC
Confidence            4588999999987655

The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.

>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function

Probab=81.24  E-value=0.68  Score=40.17  Aligned_cols=17  Identities=12%  Similarity=0.046  Sum_probs=12.4

Q ss_pred             cCCcccccccccccccc
Q 019861           95 AGSSLQCNTCKKTYSGV  111 (334)
Q Consensus        95 ~~~~~~C~~C~~~~~~~  111 (334)
                      ...++.||+||......
T Consensus        45 ~Y~V~vCP~CgyA~~~~   61 (214)
T PF09986_consen   45 FYEVWVCPHCGYAAFEE   61 (214)
T ss_pred             eeeEEECCCCCCccccc
Confidence            44679999999766443

>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase)

Probab=80.86  E-value=13  Score=34.82  Aligned_cols=89  Identities=24%  Similarity=0.221  Sum_probs=55.2

Q ss_pred             CCCCCCcEEEECCCc-CHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcC-----C-C-------CCCCCceEEEeCc
Q 019861          174 KPVLGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQE-----S-N-------FPKDSIDAVHAGA  239 (334)
Q Consensus       174 ~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~-----~-~-------~~~~~fD~V~~~~  239 (334)
                      ...++.+||=.|+|. |.++..+++.....+++++|.++..++.+++.-...     . .       ...+.+|+|+-.-
T Consensus       188 ~i~~g~~VlV~G~G~vG~~a~~lak~~G~~~Vi~~~~~~~r~~~a~~~Ga~~~i~~~~~~~~~~i~~~~~~g~d~vid~~  267 (371)
T cd08281         188 GVRPGQSVAVVGLGGVGLSALLGAVAAGASQVVAVDLNEDKLALARELGATATVNAGDPNAVEQVRELTGGGVDYAFEMA  267 (371)
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHHHcCCceEeCCCchhHHHHHHHHhCCCCCEEEECC
Confidence            445678888898764 455555555532226999999998888876531100     0 0       1122577776432


Q ss_pred             cccCCCCHHHHHHHHHHcccCCcEEEEEE
Q 019861          240 AIHCWSSPSTGVAEISRVLRPGGVFVGTT  268 (334)
Q Consensus       240 vl~h~~d~~~~L~~i~r~LkpgG~lii~~  268 (334)
                           ..+ ..+....+.|+++|.+++..
T Consensus       268 -----G~~-~~~~~~~~~l~~~G~iv~~G  290 (371)
T cd08281         268 -----GSV-PALETAYEITRRGGTTVTAG  290 (371)
T ss_pred             -----CCh-HHHHHHHHHHhcCCEEEEEc
Confidence                 222 35777888999999988754

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd

>PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures []

Probab=80.75  E-value=4.2  Score=36.39  Aligned_cols=36  Identities=22%  Similarity=0.203  Sum_probs=29.6

Q ss_pred             CCCCcEEEECCCcCHHHHHHHHcC-----CCCeEEEEeCCH
Q 019861          176 VLGGNIIDASCGSGLFSRIFAKSG-----LFSLVVALDYSE  211 (334)
Q Consensus       176 ~~~~~vLDiGcG~G~~~~~l~~~~-----~~~~v~giD~s~  211 (334)
                      .+...++|+|||.|.++.+++...     ....++.||-..
T Consensus        17 ~~~~~~vEfGaGrg~LS~~v~~~~~~~~~~~~~~~lIDR~~   57 (259)
T PF05206_consen   17 NPDSCFVEFGAGRGELSRWVAQALQEDKPSNSRFVLIDRAS   57 (259)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHhhhcccCCccEEEEecCc
Confidence            456799999999999999998875     345888999754

The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing

>PF05129 Elf1: Transcription elongation factor Elf1 like; InterPro: IPR007808 This family of uncharacterised, mostly short, proteins contain a putative zinc binding domain with four conserved cysteines

Probab=80.44  E-value=0.47  Score=34.33  Aligned_cols=39  Identities=18%  Similarity=0.431  Sum_probs=18.0

Q ss_pred             CceeCCCCCCCccccCCCCcccccccCCcccccccccccccc
Q 019861           70 NVLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSGV  111 (334)
Q Consensus        70 ~~l~CPiC~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~~~~  111 (334)
                      ..|.||.|+........-   ........+.|..||..|...
T Consensus        21 ~~F~CPfC~~~~sV~v~i---dkk~~~~~~~C~~Cg~~~~~~   59 (81)
T PF05129_consen   21 KVFDCPFCNHEKSVSVKI---DKKEGIGILSCRVCGESFQTK   59 (81)
T ss_dssp             S----TTT--SS-EEEEE---ETTTTEEEEEESSS--EEEEE
T ss_pred             ceEcCCcCCCCCeEEEEE---EccCCEEEEEecCCCCeEEEc
Confidence            468999999754333210   112345689999999887555

; PDB: 1WII_A.

>PF14205 Cys_rich_KTR: Cysteine-rich KTR

Probab=80.41  E-value=1.3  Score=29.06  Aligned_cols=37  Identities=22%  Similarity=0.340  Sum_probs=20.5

Q ss_pred             ceeCCCCCCCccccCCCCcccccc-cCCcccccccccccccc
Q 019861           71 VLACPICYKPLTWIGDSSLSIESA-AGSSLQCNTCKKTYSGV  111 (334)
Q Consensus        71 ~l~CPiC~~~l~~~~~~~~~~~~~-~~~~~~C~~C~~~~~~~  111 (334)
                      =+.||+||+.-.....    .+.. ..--+.|+.|.+.....
T Consensus         4 Wi~CP~CgnKTR~kir----~DT~LkNfPlyCpKCK~EtlI~   41 (55)
T PF14205_consen    4 WILCPICGNKTRLKIR----EDTVLKNFPLYCPKCKQETLID   41 (55)
T ss_pred             EEECCCCCCccceeee----cCceeccccccCCCCCceEEEE
Confidence            3679999984321110    0011 11248999998765443

>KOG2918 consensus Carboxymethyl transferase [Posttranslational modification, protein turnover, chaperones]

Probab=80.39  E-value=35  Score=31.31  Aligned_cols=40  Identities=15%  Similarity=0.189  Sum_probs=30.8

Q ss_pred             CCcEEEECCCcCHHHHHHHHcC--CCCeEEEEeCCHHHHHHH
Q 019861          178 GGNIIDASCGSGLFSRIFAKSG--LFSLVVALDYSENMLKQC  217 (334)
Q Consensus       178 ~~~vLDiGcG~G~~~~~l~~~~--~~~~v~giD~s~~~~~~a  217 (334)
                      ...|+.+|||.-.+...|...+  ....++-+|+++......
T Consensus        88 ~~qivnLGcG~D~l~frL~s~~~~~~~~fievDfp~~~~rKi  129 (335)
T KOG2918|consen   88 KKQIVNLGAGFDTLYFRLLSSGELDRVKFIEVDFPEVVERKI  129 (335)
T ss_pred             ceEEEEcCCCccchhhhhhccCCCCcceEEEecCcHHHHHHH
Confidence            4689999999998888888876  445677778776655555

>COG3877 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=80.25  E-value=0.89  Score=34.08  Aligned_cols=29  Identities=31%  Similarity=0.786  Sum_probs=22.1

Q ss_pred             CceeCCCCCCCccccCCCCcccccccCCcccccccccccccc
Q 019861           70 NVLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSGV  111 (334)
Q Consensus        70 ~~l~CPiC~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~~~~  111 (334)
                      ....||+||..+.+             ..++|++|+......
T Consensus         5 ~~~~cPvcg~~~iV-------------TeL~c~~~etTVrg~   33 (122)
T COG3877           5 VINRCPVCGRKLIV-------------TELKCSNCETTVRGN   33 (122)
T ss_pred             CCCCCCccccccee-------------EEEecCCCCceEecc
Confidence            34679999998765             469999998765444

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	334
4hg2_A	257	The Structure Of A Putative Type Ii Methyltransfera		1e-05
3bkw_A	243	Crystal Structure Of S-Adenosylmethionine Dependent		5e-05
3ccf_A	279	Crystal Structure Of Putative Methyltransferase (Yp		7e-05

>pdb|4HG2|A Chain A, The Structure Of A Putative Type Ii Methyltransferase From Anaeromyxobacter Dehalogenans. Length = 257

Iteration: 1
 Score = 47.0 bits (110), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 32/99 (32%), Positives = 44/99 (44%), Gaps = 11/99 (11%)
Query: 179 GNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQ--------QESNFPKD 230
           G+ +D  CGSG  S   A+   F  V A+D  E  ++Q     +        +++  P  
Sbjct: 41  GDALDCGCGSGQASLGLAE--FFERVHAVDPGEAQIRQALRHPRVTYAVAPAEDTGLPPA 98
Query: 231 SIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTY 269
           S+D   A  A H W       AE+ RV RPG VF   TY
Sbjct: 99  SVDVAIAAQAXH-WFDLDRFWAELRRVARPGAVFAAVTY 136

>pdb|3BKW|A Chain A, Crystal Structure Of S-Adenosylmethionine Dependent Methyltransferase (Np_104914.1) From Mesorhizobium Loti At 1.60 A Resolution Length = 243

Iteration: 1
 Score = 45.4 bits (106), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 34/115 (29%), Positives = 51/115 (44%), Gaps = 12/115 (10%)
Query: 165 EFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQC------- 217
           E+  ++  L  V G  I+D  CG G F R   + G  S V+ LD SE  L +        
Sbjct: 31  EWPALRAXLPEVGGLRIVDLGCGFGWFCRWAHEHGA-SYVLGLDLSEKXLARARAAGPDT 89
Query: 218 ---YEFVQQES-NFPKDSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTT 268
              YE    +  + P+DS D  ++  A+H     +     + + L PGG FV +T
Sbjct: 90  GITYERADLDKLHLPQDSFDLAYSSLALHYVEDVARLFRTVHQALSPGGHFVFST 144

>pdb|3CCF|A Chain A, Crystal Structure Of Putative Methyltransferase (Yp_321342.1) From Anabaena Variabilis Atcc 29413 At 1.90 A Resolution Length = 279

Iteration: 1
 Score = 44.7 bits (104), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 37/143 (25%), Positives = 62/143 (43%), Gaps = 24/143 (16%)
Query: 151 RQNFVWGGFPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYS 210
           + +FVW       +  E +   L P  G  I+D  CG+G  +   A+SG  + V+  D +
Sbjct: 38  KHSFVW-------QYGEDLLQLLNPQPGEFILDLGCGTGQLTEKIAQSG--AEVLGTDNA 88
Query: 211 ENMLKQCYEF-------VQQESNFPKDS-IDAVHAGAAIHCWSSPSTGVAEISRVLRPGG 262
              +++  +        V    NF  D  +DAV + A +H    P   +A I + L+ GG
Sbjct: 89  ATXIEKARQNYPHLHFDVADARNFRVDKPLDAVFSNAXLHWVKEPEAAIASIHQALKSGG 148
Query: 263 VFVG-------TTYIVDGPFNLI 278
            FV          YI++  +N +
Sbjct: 149 RFVAEFGGKGNIKYILEALYNAL 171

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	334
3ege_A	261	Putative methyltransferase from antibiotic biosyn	2e-21
3l8d_A	242	Methyltransferase; structural genomics, PSI, nysgr	4e-21
3i9f_A	170	Putative type 11 methyltransferase; structural gen	3e-20
3dlc_A	219	Putative S-adenosyl-L-methionine-dependent methylt	4e-19
3mgg_A	276	Methyltransferase; NYSGXRC, PSI-II, protein struct	4e-19
3hnr_A	220	Probable methyltransferase BT9727_4108; structural	6e-19
1vl5_A	260	Unknown conserved protein BH2331; putative methylt	8e-19
2yqz_A	263	Hypothetical protein TTHA0223; RNA methyltransfera	1e-18
1vlm_A	219	SAM-dependent methyltransferase; possible histamin	4e-18
3e23_A	211	Uncharacterized protein RPA2492; alpha-beta protei	6e-18
3e8s_A	227	Putative SAM dependent methyltransferase; NP_74470	1e-17
3bkw_A	243	MLL3908 protein, S-adenosylmethionine dependent me	2e-17
2p8j_A	209	S-adenosylmethionine-dependent methyltransferase;	3e-17
1ve3_A	227	Hypothetical protein PH0226; dimer, riken structur	3e-17
3g5l_A	253	Putative S-adenosylmethionine dependent methyltran	5e-17
3h2b_A	203	SAM-dependent methyltransferase; alpha-beta protei	7e-17
1xxl_A	239	YCGJ protein; structural genomics, protein structu	4e-16
2avn_A	260	Ubiquinone/menaquinone biosynthesis methyltransfe	6e-16
3ccf_A	279	Cyclopropane-fatty-acyl-phospholipid synthase; YP_	7e-16
2gs9_A	211	Hypothetical protein TT1324; methyl transferase, s	1e-15
3ou2_A	218	SAM-dependent methyltransferase; O-methyltransfera	2e-15
3dtn_A	234	Putative methyltransferase MM_2633; structural gen	3e-15
3bus_A	273	REBM, methyltransferase; rebeccamycin synthesis; H	5e-15
3g5t_A	299	Trans-aconitate 3-methyltransferase; structural ge	4e-14
3cgg_A	195	SAM-dependent methyltransferase; NP_600671.1, meth	4e-14
3m33_A	226	Uncharacterized protein; structural genomics, PSI-	7e-14
3gu3_A	284	Methyltransferase; alpha-beta protein, structural	1e-13
3f4k_A	257	Putative methyltransferase; structural genomics, P	2e-13
3kkz_A	267	Uncharacterized protein Q5LES9; putative methyltra	3e-13
3dh0_A	219	SAM dependent methyltransferase; cystal structure,	4e-13
3ujc_A	266	Phosphoethanolamine N-methyltransferase; parasite;	7e-13
4fsd_A	383	Arsenic methyltransferase; rossmann fold; 1.75A {C	4e-12
1xtp_A	254	LMAJ004091AAA; SGPP, structural genomics, PSI, pro	5e-12
2o57_A	297	Putative sarcosine dimethylglycine methyltransfera	1e-11
3sm3_A	235	SAM-dependent methyltransferases; NESG, structural	1e-11
1p91_A	269	Ribosomal RNA large subunit methyltransferase A; R	1e-11
2p35_A	259	Trans-aconitate 2-methyltransferase; SAM dependent	3e-11
2kw5_A	202	SLR1183 protein; structural genomics, northeast st	6e-11
2ex4_A	241	Adrenal gland protein AD-003; methyltransferase, s	3e-10
3ggd_A	245	SAM-dependent methyltransferase; YP_325210.1, stru	3e-10
3ofk_A	216	Nodulation protein S; NODS, N-methyltransferase, S	7e-10
3cc8_A	230	Putative methyltransferase; structural genomics, j	7e-10
2pxx_A	215	Uncharacterized protein MGC2408; structural genomi	9e-10
2xvm_A	199	Tellurite resistance protein TEHB; antibiotic resi	1e-09
3ocj_A	305	Putative exported protein; structural genomics, PS	3e-09
1y8c_A	246	S-adenosylmethionine-dependent methyltransferase;	3e-09
3dli_A	240	Methyltransferase; PSI-II, NYSGXRC, structural gen	4e-09
3thr_A	293	Glycine N-methyltransferase; GNMT, folate, methylt	7e-09
3bxo_A	239	N,N-dimethyltransferase; desosamine, sugar, carboh	9e-09
3eey_A	197	Putative rRNA methylase; rRNA methylation, S-adeno	1e-08
3pfg_A	263	N-methyltransferase; N,N-dimethyltransferase, SAM	1e-08
1wzn_A	252	SAM-dependent methyltransferase; structural genomi	1e-08
3d2l_A	243	SAM-dependent methyltransferase; ZP_00538691.1, st	2e-08
1ri5_A	298	MRNA capping enzyme; methyltransferase, M7G, messe	6e-08
3g2m_A	299	PCZA361.24; SAM-dependent methyltransferase, glyco	7e-08
2aot_A	292	HMT, histamine N-methyltransferase; classic methyl	8e-08
3vc1_A	312	Geranyl diphosphate 2-C-methyltransferase; rossman	9e-08
3m70_A	286	Tellurite resistance protein TEHB homolog; structu	9e-08
3mti_A	185	RRNA methylase; SAM-dependent, PSI, MCSG, structur	2e-07
3jwg_A	219	HEN1, methyltransferase type 12; 1.90A {Clostridiu	4e-07
2p7i_A	250	Hypothetical protein; putative methyltransferase,	4e-07
3lcc_A	235	Putative methyl chloride transferase; halide methy	9e-07
3jwh_A	217	HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena	2e-06
2vdw_A	302	Vaccinia virus capping enzyme D1 subunit; nucleoti	1e-05
3bkx_A	275	SAM-dependent methyltransferase; YP_807781.1, cycl	3e-05
2zfu_A	215	Nucleomethylin, cerebral protein 1; nucleolar prot	3e-05
4dcm_A	375	Ribosomal RNA large subunit methyltransferase G; 2	6e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-05
3htx_A	950	HEN1; HEN1, small RNA methyltransferase, protein-R	5e-04
1x19_A	359	CRTF-related protein; methyltransferase, bacterioc	6e-04
1nkv_A	256	Hypothetical protein YJHP; structural genomics, PS	7e-04

>3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413} Length = 261

 Score = 90.7 bits (225), Expect = 2e-21
 Identities = 32/152 (21%), Positives = 55/152 (36%), Gaps = 13/152 (8%)

Query: 158 GFPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQC 217
                 +    +   L    G  I D   G+G +S   A  GLF  V A++ S  M +Q 
Sbjct: 15  TRVPDIRIVNAIINLLNLPKGSVIADIGAGTGGYSVALANQGLF--VYAVEPSIVMRQQA 72

Query: 218 -----YEFVQ---QESNFPKDSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTY 269
                 E+     +    P  S+D V +  AIH +S       E+ R++R G + +    
Sbjct: 73  VVHPQVEWFTGYAENLALPDKSVDGVISILAIHHFSHLEKSFQEMQRIIRDGTIVL---L 129

Query: 270 IVDGPFNLIPFSRLLRQNMMQISGSYTFLSER 301
             D       +       + + +  +  L E+
Sbjct: 130 TFDIRLAQRIWLYDYFPFLWEDALRFLPLDEQ 161

>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.70A {Bacillus thuringiensis} Length = 242

 Score = 89.6 bits (222), Expect = 4e-21
 Identities = 32/186 (17%), Positives = 62/186 (33%), Gaps = 27/186 (14%)

Query: 140 PFMSFIYERGWRQNFVWGGFPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSG 199
            F +   +  W                   + Y+K      ++D  CG G  +   +++G
Sbjct: 25  EFWNQNSQEMWDSGSR-------STIIPFFEQYVKK--EAEVLDVGCGDGYGTYKLSRTG 75

Query: 200 LFSLVVALDYSENMLKQCYE--------FVQ---QESNFPKDSIDAVHAGAAIHCWSSPS 248
                V +D SE M+++  E        F++       F  +  +A+ A  ++     P 
Sbjct: 76  --YKAVGVDISEVMIQKGKERGEGPDLSFIKGDLSSLPFENEQFEAIMAINSLEWTEEPL 133

Query: 249 TGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLCR 308
             + EI RVL+  G                 + RL  ++++        +   E E L +
Sbjct: 134 RALNEIKRVLKSDGYACIAILGPTAKPRENSYPRLYGKDVV-----CNTMMPWEFEQLVK 188

Query: 309 ACGLVD 314
             G   
Sbjct: 189 EQGFKV 194

>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus} Length = 170

 Score = 85.1 bits (211), Expect = 3e-20
 Identities = 28/148 (18%), Positives = 55/148 (37%), Gaps = 25/148 (16%)

Query: 173 LKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQC---YEFVQQES---N 226
           +     G I+D  CG+G + +   +    + +  +D +   LK+    ++ V   S    
Sbjct: 13  IFEGKKGVIVDYGCGNGFYCKYLLEFA--TKLYCIDINVIALKEVKEKFDSVITLSDPKE 70

Query: 227 FPKDSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVD--------GPFNLI 278
            P +S+D +    + H        ++E+ R+L+  G  +    I+D        GP   I
Sbjct: 71  IPDNSVDFILFANSFHDMDDKQHVISEVKRILKDDGRVI----IIDWRKENTGIGPPLSI 126

Query: 279 PFSRLLRQNMMQISGSYTFLSEREIEDL 306
                 +  M   S    F+ E+     
Sbjct: 127 RMDE--KDYMGWFSN---FVVEKRFNPT 149

>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis} Length = 219

 Score = 83.7 bits (207), Expect = 4e-19
 Identities = 30/173 (17%), Positives = 64/173 (36%), Gaps = 21/173 (12%)

Query: 178 GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQE--SN--------- 226
            G  ID   G G  S   AK   FS + ALD+S++M +   + +     ++         
Sbjct: 44  AGTCIDIGSGPGALSIALAKQSDFS-IRALDFSKHMNEIALKNIADANLNDRIQIVQGDV 102

Query: 227 ----FPKDSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSR 282
                  +  D + +  ++  W   +T   EI R+L+ GG         +        + 
Sbjct: 103 HNIPIEDNYADLIVSRGSVFFWEDVATAFREIYRILKSGGKTYIGGGFGNKELRDSISAE 162

Query: 283 LLRQN---MMQISGSYTFLSEREIEDLCRACGLVDFKCTRNR-GF-VMFTATK 330
           ++R+N         + +  +    +++    G+  ++      GF ++ + T 
Sbjct: 163 MIRKNPDWKEFNRKNISQENVERFQNVLDEIGISSYEIILGDEGFWIIISKTD 215

>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} Length = 276

 Score = 84.6 bits (209), Expect = 4e-19
 Identities = 31/170 (18%), Positives = 57/170 (33%), Gaps = 22/170 (12%)

Query: 164 KEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQ 223
           ++         P  G  +++A CG G  + I AK+   + + ++D S   L++  E  ++
Sbjct: 26  EKLLHHDTVYPP--GAKVLEAGCGIGAQTVILAKNNPDAEITSIDISPESLEKARENTEK 83

Query: 224 E--SN------------FPKDSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTY 269
               N            F   S D +     +    SP   +  + +VL+PGG       
Sbjct: 84  NGIKNVKFLQANIFSLPFEDSSFDHIFVCFVLEHLQSPEEALKSLKKVLKPGGTITVIEG 143

Query: 270 IVDGPFNLIPFSRLLRQNMMQISGSYT-----FLSEREIEDLCRACGLVD 314
              G     P  +   +    +           L  R+I  L +  G   
Sbjct: 144 -DHGSCYFHPEGKKAIEAWNCLIRVQAYMKGNSLVGRQIYPLLQESGFEK 192

>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian} Length = 220

 Score = 83.0 bits (205), Expect = 6e-19
 Identities = 38/204 (18%), Positives = 70/204 (34%), Gaps = 30/204 (14%)

Query: 154 FVWGGFPGPEKEFELMKGYLKPVL---GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYS 210
           FV G     ++ F   +  L+ V+    GN+++   G+G  +     +G    V  ++ S
Sbjct: 19  FVQGEDIQYKEVFAHYEDILEDVVNKSFGNVLEFGVGTGNLTNKLLLAGRT--VYGIEPS 76

Query: 211 ENMLKQC-------YEFVQQE-SNFP-KDSIDAVHAGAAIHCWSSPSTGVA--EISRVLR 259
             M           +   + +  +F    SID + +  A H  +     VA  + S++L 
Sbjct: 77  REMRMIAKEKLPKEFSITEGDFLSFEVPTSIDTIVSTYAFHHLTDDEKNVAIAKYSQLLN 136

Query: 260 PGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYT--------FLSEREIEDLCRACG 311
            GG  V      D  F          +   Q              +     ++ +    G
Sbjct: 137 KGGKIV----FADTIFADQDAYDKTVEAAKQRGFHQLANDLQTEYYTRIPVMQTIFENNG 192

Query: 312 L-VDFKCTRNRGFVMFTATKPSQN 334
             V F    +  +VM  ATK  ++
Sbjct: 193 FHVTFTRLNHFVWVM-EATKQLEH 215

>1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41 Length = 260

 Score = 83.7 bits (207), Expect = 8e-19
 Identities = 31/181 (17%), Positives = 61/181 (33%), Gaps = 22/181 (12%)

Query: 164 KEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQ------- 216
            +   +           ++D + G G  +  FA       VVA D +E++LK        
Sbjct: 24  SDLAKLMQIAALKGNEEVLDVATGGGHVANAFAPFV--KKVVAFDLTEDILKVARAFIEG 81

Query: 217 ----CYEFVQ---QESNFPKDSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTY 269
                 E+VQ   ++  F  +    V    A H + +P++ V+E  RVL+ GG  +    
Sbjct: 82  NGHQQVEYVQGDAEQMPFTDERFHIVTCRIAAHHFPNPASFVSEAYRVLKKGGQLL---- 137

Query: 270 IVDGPFNLIPFSRLLRQNMMQI--SGSYTFLSEREIEDLCRACGLVDFKCTRNRGFVMFT 327
           +VD          +    + +      +    + +   +    G    +        +F 
Sbjct: 138 LVDNSAPENDAFDVFYNYVEKERDYSHHRAWKKSDWLKMLEEAGFELEELHCFHKTFIFE 197

Query: 328 A 328
            
Sbjct: 198 D 198

>2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A Length = 263

 Score = 83.1 bits (205), Expect = 1e-18
 Identities = 31/204 (15%), Positives = 52/204 (25%), Gaps = 33/204 (16%)

Query: 140 PFMSFIYERGWRQNFVWGGFPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSG 199
                +  +            G                    ++   G+G  +      G
Sbjct: 17  AHPPEVAGQIATAMASAVHPKGE---------------EPVFLELGVGTGRIALPLIARG 61

Query: 200 LFSLVVALDYSENMLKQ----------CYEFVQ---QESNFPKDSIDAVHAGAAIHCWSS 246
                +ALD    ML+             + VQ   +    P +S+  V      H    
Sbjct: 62  YR--YIALDADAAMLEVFRQKIAGVDRKVQVVQADARAIPLPDESVHGVIVVHLWHLVPD 119

Query: 247 PSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQ---ISGSYTFLSEREI 303
               +AE  RVL+PGG  +      +         R       +   +         +E+
Sbjct: 120 WPKVLAEAIRVLKPGGALLEGWDQAEASPEWTLQERWRAFAAEEGFPVERGLHAKRLKEV 179

Query: 304 EDLCRACGLVDFKCTRNRGFVMFT 327
           E+  R  GL        R     T
Sbjct: 180 EEALRRLGLKPRTREVARWREERT 203

>1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41 Length = 219

 Score = 80.6 bits (199), Expect = 4e-18
 Identities = 27/151 (17%), Positives = 50/151 (33%), Gaps = 20/151 (13%)

Query: 178 GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQC----YEFVQ---QESNFPKD 230
            G  ++   G+G F+            + ++ SE M +         ++   +      +
Sbjct: 48  EGRGVEIGVGTGRFAVPLKI------KIGVEPSERMAEIARKRGVFVLKGTAENLPLKDE 101

Query: 231 SIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQ 290
           S D       I     P   + E  R+L+ GG  +    +           R   +N  +
Sbjct: 102 SFDFALMVTTICFVDDPERALKEAYRILKKGGYLI----VGIVDRES-FLGREYEKNKEK 156

Query: 291 IS--GSYTFLSEREIEDLCRACGLVDFKCTR 319
                +  F S  E+ DL R  G  +FK  +
Sbjct: 157 SVFYKNARFFSTEELMDLMRKAGFEEFKVVQ 187

>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris} Length = 211

 Score = 80.3 bits (198), Expect = 6e-18
 Identities = 37/180 (20%), Positives = 61/180 (33%), Gaps = 35/180 (19%)

Query: 171 GYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQ------- 223
           G L    G  I++  CG+G  +     +G    V A D S  +  +    + +       
Sbjct: 39  GELPA--GAKILELGCGAGYQAEAMLAAGFD--VDATDGSPELAAEASRRLGRPVRTMLF 94

Query: 224 ESNFPKDSIDAVHAGAAIHCWSSPSTG--VAEISRVLRPGGVFVGTTYIVDGPFNLIPFS 281
                 D+ DAV A A +           +  I R L+PGG+F  +    +G        
Sbjct: 95  HQLDAIDAYDAVWAHACLLHVPRDELADVLKLIWRALKPGGLFYASYKSGEGE----GRD 150

Query: 282 RLLRQNMMQISGSYTFLSEREIEDLCRACGL---VDFKCTRNRG-------FVMFTATKP 331
           +L R         Y + SE  +       G    V  + +  +G       F+  +  KP
Sbjct: 151 KLARY--------YNYPSEEWLRARYAEAGTWASVAVESSEGKGFDQELAQFLHVSVRKP 202

>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440} Length = 227

 Score = 79.5 bits (196), Expect = 1e-17
 Identities = 26/182 (14%), Positives = 47/182 (25%), Gaps = 21/182 (11%)

Query: 150 WRQNFVWGGFPG-PEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALD 208
           W      G      +   + +   +       ++D  CG G   R  A  G     V +D
Sbjct: 24  WIDAVRHGAIESRRQVTDQAILLAILGRQPERVLDLGCGEGWLLRALADRG--IEAVGVD 81

Query: 209 YSENMLKQ----------CYEFVQQESN--FPKDSIDAVHAGAAIHCWSSPSTGVAEISR 256
               ++               + Q            D + A  A+         ++ +  
Sbjct: 82  GDRTLVDAARAAGAGEVHLASYAQLAEAKVPVGKDYDLICANFALL-HQDIIELLSAMRT 140

Query: 257 VLRPGGVFVGTT----YIVDGP-FNLIPFSRLLRQNMMQISGSYTFLSEREIEDLCRACG 311
           +L PGG  V  T     + DG   +                  + F +     +     G
Sbjct: 141 LLVPGGALVIQTLHPWSVADGDYQDGWREESFAGFAGDWQPMPWYFRTLASWLNALDMAG 200

Query: 312 LV 313
           L 
Sbjct: 201 LR 202

>3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti} Length = 243

 Score = 79.5 bits (196), Expect = 2e-17
 Identities = 33/115 (28%), Positives = 52/115 (45%), Gaps = 12/115 (10%)

Query: 165 EFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQ-------- 216
           E+  ++  L  V G  I+D  CG G F R   + G  S V+ LD SE ML +        
Sbjct: 31  EWPALRAMLPEVGGLRIVDLGCGFGWFCRWAHEHG-ASYVLGLDLSEKMLARARAAGPDT 89

Query: 217 CYEFVQ---QESNFPKDSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTT 268
              + +    + + P+DS D  ++  A+H     +     + + L PGG FV +T
Sbjct: 90  GITYERADLDKLHLPQDSFDLAYSSLALHYVEDVARLFRTVHQALSPGGHFVFST 144

>2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum} Length = 209

 Score = 78.4 bits (193), Expect = 3e-17
 Identities = 30/208 (14%), Positives = 68/208 (32%), Gaps = 32/208 (15%)

Query: 156 WGGFPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLK 215
                 P+     +K   +  L   ++D   G  L          +     ++ S+  LK
Sbjct: 3   KTIIRQPQLY-RFLKYCNESNLDKTVLDCGAGGDLPPLSIFVEDGYK-TYGIEISDLQLK 60

Query: 216 QCYEFVQQESN-------------FPKDSIDAVHAGAAIHCWSSP--STGVAEISRVLRP 260
           +   F ++ +              F  +S+  V++   I           + EI RVL+P
Sbjct: 61  KAENFSRENNFKLNISKGDIRKLPFKDESMSFVYSYGTIFHMRKNDVKEAIDEIKRVLKP 120

Query: 261 GGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGS----YTFLSEREIEDLCRACGLVDFK 316
           GG+                  ++     +Q+       ++++S  E +   +   ++  +
Sbjct: 121 GGLACINFLTTKDE-RYNKGEKIGEGEFLQLERGEKVIHSYVSLEEADKYFKDMKVLFKE 179

Query: 317 ----------CTRNRGFVMFTATKPSQN 334
                         +G+V + A K S++
Sbjct: 180 DRVVERINDGLKIKQGYVDYIAEKFSKS 207

>1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43 Length = 227

 Score = 78.4 bits (193), Expect = 3e-17
 Identities = 32/136 (23%), Positives = 57/136 (41%), Gaps = 19/136 (13%)

Query: 167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYE------- 219
            L+  Y+K    G ++D +CG G FS +    G    VV +D SE+M+++  E       
Sbjct: 30  PLLMKYMKK--RGKVLDLACGVGGFSFLLEDYGFE--VVGVDISEDMIRKAREYAKSRES 85

Query: 220 ---FVQQ---ESNFPKDSIDAVHAGAAIHCWSS--PSTGVAEISRVLRPGGVFVGTTYIV 271
              F+     + +F   + D V    +I  +     +    E+ RVL+P G F+     +
Sbjct: 86  NVEFIVGDARKLSFEDKTFDYVIFIDSIVHFEPLELNQVFKEVRRVLKPSGKFIMYFTDL 145

Query: 272 DGPFNLIPFSRLLRQN 287
                 +  S ++ Q 
Sbjct: 146 RELLPRLKESLVVGQK 161

>3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str} Length = 253

 Score = 78.4 bits (193), Expect = 5e-17
 Identities = 24/117 (20%), Positives = 45/117 (38%), Gaps = 12/117 (10%)

Query: 163 EKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYE--- 219
             E+  +K  L       ++D  CG G      A+ G    V+ +D SE ML +      
Sbjct: 30  AGEWHELKKMLPDFNQKTVLDLGCGFGWHCIYAAEHG-AKKVLGIDLSERMLTEAKRKTT 88

Query: 220 -----FVQ---QESNFPKDSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTT 268
                + Q   ++     D+ + V +  A+H  +S      ++   L+  G F+ + 
Sbjct: 89  SPVVCYEQKAIEDIAIEPDAYNVVLSSLALHYIASFDDICKKVYINLKSSGSFIFSV 145

>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032} Length = 203

 Score = 77.1 bits (190), Expect = 7e-17
 Identities = 17/169 (10%), Positives = 45/169 (26%), Gaps = 24/169 (14%)

Query: 156 WGGFPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLK 215
            G     E    ++       + G I+D   G+G ++   A  G    +  L+ +  +++
Sbjct: 20  LGTVISAEDPDRVLIEPWATGVDGVILDVGSGTGRWTGHLASLGH--QIEGLEPATRLVE 77

Query: 216 QCYE------FVQ---QESNFPKDSIDAVHAGAAIHC--WSSPSTGVAEISRVLRPGGVF 264
              +      F      + +        + A  ++           +  +   +  GG  
Sbjct: 78  LARQTHPSVTFHHGTITDLSDSPKRWAGLLAWYSLIHMGPGELPDALVALRMAVEDGGGL 137

Query: 265 VGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLCRACGLV 313
           + + +                + M     +       E+       G  
Sbjct: 138 LMSFFSGPSL-----------EPMYHPVATAYRWPLPELAQALETAGFQ 175

>1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A* Length = 239

 Score = 75.6 bits (186), Expect = 4e-16
 Identities = 30/167 (17%), Positives = 59/167 (35%), Gaps = 22/167 (13%)

Query: 178 GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQ-----------CYEFVQ---Q 223
              ++D   G+G  +  F+        + +D ++ M++               F Q   +
Sbjct: 22  EHRVLDIGAGAGHTALAFSPYV--QECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAE 79

Query: 224 ESNFPKDSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRL 283
              FP DS D +    A H +S     V E++RVL+  G F+    +VD      P    
Sbjct: 80  SLPFPDDSFDIITCRYAAHHFSDVRKAVREVARVLKQDGRFL----LVDHYAPEDPVLDE 135

Query: 284 LRQNMMQI--SGSYTFLSEREIEDLCRACGLVDFKCTRNRGFVMFTA 328
              ++ ++         S  E + +  A  L      +    + + +
Sbjct: 136 FVNHLNRLRDPSHVRESSLSEWQAMFSANQLAYQDIQKWNLPIQYDS 182

>2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41 Length = 260

 Score = 75.3 bits (185), Expect = 6e-16
 Identities = 28/108 (25%), Positives = 48/108 (44%), Gaps = 13/108 (12%)

Query: 167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQ-----CYEFV 221
             ++ YLK      ++D   G+G +S    + G    VV +D S+ ML+          V
Sbjct: 46  SFLEEYLKN--PCRVLDLGGGTGKWSLFLQERGFE--VVLVDPSKEMLEVAREKGVKNVV 101

Query: 222 QQES---NFPKDSIDAVHA-GAAIHCWSSPSTGVAEISRVLRPGGVFV 265
           + ++    FP  + +AV A G  +    +     +EI RVL P G+ +
Sbjct: 102 EAKAEDLPFPSGAFEAVLALGDVLSYVENKDKAFSEIRRVLVPDGLLI 149

>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413} Length = 279

 Score = 75.6 bits (186), Expect = 7e-16
 Identities = 35/157 (22%), Positives = 58/157 (36%), Gaps = 20/157 (12%)

Query: 173 LKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQC------YEFVQQ--E 224
           L P  G  I+D  CG+G  +   A+SG  + V+  D +  M+++         F      
Sbjct: 53  LNPQPGEFILDLGCGTGQLTEKIAQSG--AEVLGTDNAATMIEKARQNYPHLHFDVADAR 110

Query: 225 SNFPKDSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLL 284
           +      +DAV + A +H    P   +A I + L+ GG FV       G  N+      L
Sbjct: 111 NFRVDKPLDAVFSNAMLHWVKEPEAAIASIHQALKSGGRFVAEFG---GKGNIKYILEAL 167

Query: 285 RQNMMQIS-------GSYTFLSEREIEDLCRACGLVD 314
              +  +          + F S  E  ++    G   
Sbjct: 168 YNALETLGIHNPQALNPWYFPSIGEYVNILEKQGFDV 204

>2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus} Length = 211

 Score = 73.7 bits (181), Expect = 1e-15
 Identities = 35/153 (22%), Positives = 61/153 (39%), Gaps = 17/153 (11%)

Query: 163 EKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYE--- 219
            +E   +KG L P  G ++++   G+G + R           V ++ SE ML        
Sbjct: 24  AEEERALKGLLPP--GESLLEVGAGTGYWLRRLPYPQ----KVGVEPSEAMLAVGRRRAP 77

Query: 220 ---FVQ---QESNFPKDSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDG 273
              +V+   +   FP +S D V     +         + E  RVLRPGG  V        
Sbjct: 78  EATWVRAWGEALPFPGESFDVVLLFTTLEFVEDVERVLLEARRVLRPGGALVVGVLEALS 137

Query: 274 PFNLIPFSRLLRQNMMQISGSYTFLSEREIEDL 306
           P+    + RL  + ++  +    FL+  +++ L
Sbjct: 138 PW-AALYRRLGEKGVLPWAQ-ARFLAREDLKAL 168

>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A* Length = 218

 Score = 73.0 bits (179), Expect = 2e-15
 Identities = 32/182 (17%), Positives = 55/182 (30%), Gaps = 22/182 (12%)

Query: 167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQC-------YE 219
             ++      + G++++ + G+G ++R  +       V ALD S  M+ +         E
Sbjct: 36  AALERLRAGNIRGDVLELASGTGYWTRHLSGLADR--VTALDGSAEMIAEAGRHGLDNVE 93

Query: 220 FVQQ--ESNFPKDSIDAVHAGAAIHCWSSPSTG--VAEISRVLRPGGVFVGTTYIVDGPF 275
           F QQ      P    DAV     +              +   + PGGV            
Sbjct: 94  FRQQDLFDWTPDRQWDAVFFAHWLAHVPDDRFEAFWESVRSAVAPGGVVEFVDVTDHERR 153

Query: 276 NL--------IPFSRLLRQNMMQISGSYTFLSEREIEDLCRACGLVDFKCTRNRGFVMFT 327
                     +   R L+           F S  E+ +   A G        + GF+  T
Sbjct: 154 LEQQDDSEPEVAVRRTLQDG-RSFRIVKVFRSPAELTERLTALGWSCSVDEVHPGFLYAT 212

Query: 328 AT 329
             
Sbjct: 213 CR 214

>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei} Length = 234

 Score = 72.9 bits (179), Expect = 3e-15
 Identities = 26/219 (11%), Positives = 65/219 (29%), Gaps = 43/219 (19%)

Query: 142 MSFIYERGWRQNFVWGGFPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLF 201
               ++  +  +                          +I+D   G+GL S    +    
Sbjct: 24  FIPCFDDFYGVSVSIASVDTE---------------NPDILDLGAGTGLLSAFLMEKYPE 68

Query: 202 SLVVALDYSENMLKQC---------YEFVQQE-SNFP-KDSIDAVHAGAAIHCWSSP--S 248
           +    +D SE ML+            ++++ + S +  ++  D V +  +IH        
Sbjct: 69  ATFTLVDMSEKMLEIAKNRFRGNLKVKYIEADYSKYDFEEKYDMVVSALSIHHLEDEDKK 128

Query: 249 TGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGS-------------- 294
                   +L+  G+F+    +      +   ++ + +  ++ SG               
Sbjct: 129 ELYKRSYSILKESGIFINADLVHGETAFIENLNKTIWRQYVENSGLTEEEIAAGYERSKL 188

Query: 295 YTFLSEREIEDLCRACGLVDFKCT-RNRGFVMFTATKPS 332
              +   +  +  +  G  D  C  +   F +    K  
Sbjct: 189 DKDIEMNQQLNWLKEAGFRDVSCIYKYYQFAVMFGRKTE 227

>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes} Length = 273

 Score = 72.9 bits (179), Expect = 5e-15
 Identities = 37/198 (18%), Positives = 61/198 (30%), Gaps = 34/198 (17%)

Query: 145 IYERGWRQNFVWG--GFPGPEKEFE----------LMKGYLKPVLGGNIIDASCGSGLFS 192
            + R W +N  +G     G +   +          +    ++   G  ++D  CG G  +
Sbjct: 19  PFARIWGENLHFGYWEDAGADVSVDDATDRLTDEMIALLDVRS--GDRVLDVGCGIGKPA 76

Query: 193 RIFAKSGLFSLVVALDYSENMLKQCYEFVQQE--SN-------------FPKDSIDAVHA 237
              A +     V  +  S   + Q          +N             F   S DAV A
Sbjct: 77  VRLATARDVR-VTGISISRPQVNQANARATAAGLANRVTFSYADAMDLPFEDASFDAVWA 135

Query: 238 -GAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYT 296
             +  H        + E++RVLRPGG      +++  P       +          G  +
Sbjct: 136 LESLHH-MPDRGRALREMARVLRPGGTVAIADFVLLAPVE--GAKKEAVDAFRAGGGVLS 192

Query: 297 FLSEREIEDLCRACGLVD 314
                E E   R   LV 
Sbjct: 193 LGGIDEYESDVRQAELVV 210

>3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae} Length = 299

 Score = 70.8 bits (173), Expect = 4e-14
 Identities = 29/161 (18%), Positives = 44/161 (27%), Gaps = 35/161 (21%)

Query: 133 ATEFFRMPFMSFIYERGWRQNFVWGGFPG-PEKEFELMKGYLKPVLGGNIIDASCGSGLF 191
           ++ F    F S  Y    R        P  P   ++++  Y        ++D  CG G  
Sbjct: 1   SSTFSASDFNSERYSSS-R--------PSYPSDFYKMIDEYH-DGERKLLVDVGCGPGTA 50

Query: 192 SRIFAKSG-LFSLVVALDYSENMLKQC-------------YEFVQ---------QESNFP 228
           +   A+    F  ++  D S  M+K                 F              +  
Sbjct: 51  TLQMAQELKPFEQIIGSDLSATMIKTAEVIKEGSPDTYKNVSFKISSSDDFKFLGADSVD 110

Query: 229 KDSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTY 269
           K  ID + A    H W             LR  G      Y
Sbjct: 111 KQKIDMITAVECAH-WFDFEKFQRSAYANLRKDGTIAIWGY 150

>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032} Length = 195

 Score = 69.0 bits (169), Expect = 4e-14
 Identities = 27/148 (18%), Positives = 45/148 (30%), Gaps = 22/148 (14%)

Query: 134 TEFFRM----PFMSFIYERGWRQNFVWGGFPGPEKEFELMKGYLKPVLGGNIIDASCGSG 189
           T +  +    P  S  Y + WR   +         E  L+        G  I+DA CG G
Sbjct: 3   TTWKELTDNNPAHSENYAQRWRN--LAAAGNDIYGEARLIDAMAPR--GAKILDAGCGQG 58

Query: 190 LFSRIFAKSGLFSLVVALDYSENMLKQC------YEFVQ---QESNFPKDSIDAVHAGAA 240
                 +K G    V+  D    ++           +V          +   D + +   
Sbjct: 59  RIGGYLSKQGHD--VLGTDLDPILIDYAKQDFPEARWVVGDLSVDQISETDFDLIVSAGN 116

Query: 241 IHCWSSPSTG---VAEISRVLRPGGVFV 265
           +  + +       +A I R L   G  V
Sbjct: 117 VMGFLAEDGREPALANIHRALGADGRAV 144

>3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans} Length = 226

 Score = 68.9 bits (168), Expect = 7e-14
 Identities = 24/184 (13%), Positives = 45/184 (24%), Gaps = 30/184 (16%)

Query: 146 YERGWRQNFVWGGFPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVV 205
           Y   W +     G          +   L P     +++A CG G  +  F          
Sbjct: 21  YRHPWARVLS--GPDPELTFDLWLSRLLTP--QTRVLEAGCGHGPDAARFGPQAAR--WA 74

Query: 206 ALDYSENMLKQC------YEFVQQESN----FPKDSI-DAVHAGAAIHCWSSPSTGVAEI 254
           A D+S  +LK         +  +            +    + +         P++ +  +
Sbjct: 75  AYDFSPELLKLARANAPHADVYEWNGKGELPAGLGAPFGLIVSRRG------PTSVILRL 128

Query: 255 SRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSERE---IEDLCRACG 311
             +  P   F+     V    N+      L      I               ED      
Sbjct: 129 PELAAPDAHFL----YVGPRLNVPEVPERLAAVGWDIVAEDHVSVLAHAPTWEDWQMRGE 184

Query: 312 LVDF 315
            +  
Sbjct: 185 FMGK 188

>3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} PDB: 2gh1_A Length = 284

 Score = 69.2 bits (169), Expect = 1e-13
 Identities = 28/177 (15%), Positives = 56/177 (31%), Gaps = 27/177 (15%)

Query: 168 LMKGYLKPVLGGNIIDASCGSGLFSRIFAK-SGLFSLVVALDYSENMLKQ---------- 216
           L+    K     +I+D  CG G    +        S    +D  E +L +          
Sbjct: 13  LVNTVWKITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPY 72

Query: 217 CYEFVQ---QESNFPKDSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFV-------- 265
             EF++    E     D  D     A +   ++P T + ++   ++ GG  +        
Sbjct: 73  DSEFLEGDATEIELN-DKYDIAICHAFLLHMTTPETMLQKMIHSVKKGGKIICFEPHWIS 131

Query: 266 -GTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSE---REIEDLCRACGLVDFKCT 318
              +Y++DG          + Q + +              +I       G+ + +C 
Sbjct: 132 NMASYLLDGEKQSEFIQLGVLQKLFESDTQRNGKDGNIGMKIPIYLSELGVKNIECR 188

>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A* Length = 257

 Score = 68.3 bits (167), Expect = 2e-13
 Identities = 26/146 (17%), Positives = 48/146 (32%), Gaps = 26/146 (17%)

Query: 137 FRMPFMSFIYERGWRQNFVWGGFPGPE--KEFELMKGYLKPVLGGNIIDASCGSGLFSRI 194
           F   F+   ++   RQ     G   PE  ++       L       I D  CG+G  +  
Sbjct: 11  FDFSFICNYFKLLKRQ-----GPGSPEATRKAVSFINELTD--DAKIADIGCGTGGQTLF 63

Query: 195 FAKSGLFSLVVALDYSENMLKQCYE------------FVQQESN---FPKDSIDAVHAGA 239
            A       +  +D   + ++   E             +    +   F  + +D + +  
Sbjct: 64  LADYVKGQ-ITGIDLFPDFIEIFNENAVKANCADRVKGITGSMDNLPFQNEELDLIWSEG 122

Query: 240 AIHCWSSPSTGVAEISRVLRPGGVFV 265
           AI+       G+ E S+ L+ GG   
Sbjct: 123 AIYN-IGFERGMNEWSKYLKKGGFIA 147

>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A* Length = 267

 Score = 67.6 bits (165), Expect = 3e-13
 Identities = 21/122 (17%), Positives = 39/122 (31%), Gaps = 18/122 (14%)

Query: 160 PGPEKEFELMKGYLKPVL-GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCY 218
           PG  +       ++  +     I D  CG+G  + + A       V  LD+    +    
Sbjct: 28  PGSPEVTLKALSFIDNLTEKSLIADIGCGTGGQTMVLAGHVTGQ-VTGLDFLSGFIDIFN 86

Query: 219 EFVQQES---------------NFPKDSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGV 263
              +Q                  F  + +D + +  AI+       G+ E  + L+ GG 
Sbjct: 87  RNARQSGLQNRVTGIVGSMDDLPFRNEELDLIWSEGAIYNIGFER-GLNEWRKYLKKGGY 145

Query: 264 FV 265
             
Sbjct: 146 LA 147

>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus} Length = 219

 Score = 66.6 bits (163), Expect = 4e-13
 Identities = 26/120 (21%), Positives = 44/120 (36%), Gaps = 19/120 (15%)

Query: 161 GPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAK-SGLFSLVVALDYSENMLKQC-- 217
            PEK  +     LK   G  ++D   G+G +    +K  G    V A+D  E M+     
Sbjct: 25  DPEKVLKEFG--LKE--GMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWE 80

Query: 218 ---------YEFVQ---QESNFPKDSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFV 265
                     E ++    +   P +++D +      H  S P   + E+ RV +P     
Sbjct: 81  KVNKLGLKNVEVLKSEENKIPLPDNTVDFIFMAFTFHELSEPLKFLEELKRVAKPFAYLA 140

>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A* Length = 266

 Score = 66.7 bits (163), Expect = 7e-13
 Identities = 33/186 (17%), Positives = 64/186 (34%), Gaps = 27/186 (14%)

Query: 145 IYERGWRQNFV-WGGFPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSL 203
           +YE  + +N++  GG      +  L    L       ++D   G G       +      
Sbjct: 26  VYEFIFGENYISSGGLE--ATKKILSDIELNE--NSKVLDIGSGLGGGCMYINEKYGAH- 80

Query: 204 VVALDYSENMLKQCYEFVQQESN------------FPKDSIDAVHAGAAIHCWSSP--ST 249
              +D   N++    E V   +             FP+++ D +++  AI   S    + 
Sbjct: 81  THGIDICSNIVNMANERVSGNNKIIFEANDILTKEFPENNFDLIYSRDAILALSLENKNK 140

Query: 250 GVAEISRVLRPGGVFVGTTY-IVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLCR 308
              +  + L+P G  + T Y   +       F   ++Q        YT ++  E  D+  
Sbjct: 141 LFQKCYKWLKPTGTLLITDYCATEKENWDDEFKEYVKQRK------YTLITVEEYADILT 194

Query: 309 ACGLVD 314
           AC   +
Sbjct: 195 ACNFKN 200

>4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A Length = 383

 Score = 65.5 bits (159), Expect = 4e-12
 Identities = 41/265 (15%), Positives = 72/265 (27%), Gaps = 49/265 (18%)

Query: 90  SIESAAGSSLQCNTCKKTYSGVGTHFDMTAASGSKDYGELMSPATEFFR--MPFMSFIYE 147
           S  S    S    +       V  ++  T  S +         A          ++ I +
Sbjct: 4   SCASGCQKSKNGGSTPSIRDHVADYYGKTLQSSADLKTSACKLAAAVPESHRKILADIAD 63

Query: 148 RGWRQNFVWG-GFPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAK-SGLFSLVV 205
                   +G G         L         G  ++D  CG+G    + +K  G    V+
Sbjct: 64  EVL--EKFYGCGST-------LPADGSLE--GATVLDLGCGTGRDVYLASKLVGEHGKVI 112

Query: 206 ALDYSENMLKQCY-------------------EFVQ---------QESNFPKDSIDAVHA 237
            +D  +N L+                       F++         +    P  S+D V +
Sbjct: 113 GVDMLDNQLEVARKYVEYHAEKFFGSPSRSNVRFLKGFIENLATAEPEGVPDSSVDIVIS 172

Query: 238 GAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGS-YT 296
               +  ++      EI RVLR GG            +     S   +Q+ +        
Sbjct: 173 NCVCNLSTNKLALFKEIHRVLRDGGELY-----FSDVYADRRLSEAAQQDPILYGECLGG 227

Query: 297 FLSEREIEDLCRACGLVDFKCTRNR 321
            L   +   L    G  D +     
Sbjct: 228 ALYLEDFRRLVAEAGFRDVRLVSVG 252

>1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42 Length = 254

 Score = 63.9 bits (155), Expect = 5e-12
 Identities = 36/265 (13%), Positives = 73/265 (27%), Gaps = 50/265 (18%)

Query: 85  GDSSLSIESAAGSSLQCNTCKKTYSGVGTHFDMTAASGSKDYGELMSPATEFFRMPFMSF 144
           G  S+  + A+  +L  +          +  +M  A  + D  +   P   +        
Sbjct: 1   GPGSMPSKEASSRNLPISGRDTNGKTYRSTDEMWKAELTGDLYD---PEKGW-------- 49

Query: 145 IYERG---WRQ-----NFVWGGF---PGPEKEF-ELMKGYLKPVLGGNIIDASCGSGLFS 192
            Y +    WR      + V GG       + E        L        +D   G G  +
Sbjct: 50  -YGKALEYWRTVPATVSGVLGGMDHVHDVDIEGSRNFIASLPGHGTSRALDCGAGIGRIT 108

Query: 193 RIFAKSGLFSLVVALDYSENMLKQCYE---------FVQ---QESNFPKDSIDAVHAGAA 240
           +       ++    L+  ++ML++            F+    + +  P ++ D +     
Sbjct: 109 KNLLTKL-YATTDLLEPVKHMLEEAKRELAGMPVGKFILASMETATLPPNTYDLIVIQWT 167

Query: 241 IHCWSSP--STGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFL 298
               +            + L P G          G           R  + +   S T  
Sbjct: 168 AIYLTDADFVKFFKHCQQALTPNGYIFFKENCSTGD----------RFLVDKEDSSLTR- 216

Query: 299 SEREIEDLCRACGLVDFKCTRNRGF 323
           S+   + L    G+   K      +
Sbjct: 217 SDIHYKRLFNESGVRVVKEAFQEEW 241

>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18 Length = 297

 Score = 63.7 bits (155), Expect = 1e-11
 Identities = 42/259 (16%), Positives = 77/259 (29%), Gaps = 64/259 (24%)

Query: 91  IESAAGSSLQCNTCKKTYSGVGTHFDMTAASGSKDYGELMSPATEFFRMPFMSFIYERGW 150
           +E++ G S    T K        ++D   +                         Y   W
Sbjct: 3   VENSNGQSQPAATSKTVKDNAEIYYDDDDSDR----------------------FYFHVW 40

Query: 151 -RQNFVWGGFPGPEKEFEL----------------MKGYLKPVLGGNIIDASCGSGLFSR 193
             ++   G +  P  + E+                M G L+       +D   G G  +R
Sbjct: 41  GGEDIHVGLYKEPVDQDEIREASLRTDEWLASELAMTGVLQR--QAKGLDLGAGYGGAAR 98

Query: 194 IFAKSGLFSLVVALDYSENMLKQCYEFVQQES---------------NFPKDSIDAVHA- 237
              +    S +  L+ +    K+  E+  Q                     +S D + + 
Sbjct: 99  FLVRKFGVS-IDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEIPCEDNSYDFIWSQ 157

Query: 238 GAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTF 297
            A +H          E +RVL+P GV   T  + +   +      +L +  +     +  
Sbjct: 158 DAFLHS-PDKLKVFQECARVLKPRGVMAITDPMKEDGIDKSSIQPILDRIKL-----HDM 211

Query: 298 LSEREIEDLCRACGLVDFK 316
            S      L + CGLV  +
Sbjct: 212 GSLGLYRSLAKECGLVTLR 230

>3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei} Length = 235

 Score = 62.9 bits (153), Expect = 1e-11
 Identities = 31/144 (21%), Positives = 47/144 (32%), Gaps = 29/144 (20%)

Query: 145 IYERGWRQNFVWGGF-PGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSL 203
           + E  W +  V G   P     + ++  YL+      I+D  CGSG  S   A  G    
Sbjct: 1   MPESYWEK--VSGKNIPSSLDLYPIIHNYLQE--DDEILDIGCGSGKISLELASKG--YS 54

Query: 204 VVALDYSENMLK----------------QCYEFVQ---QESNFPKDSIDAVHAGAAI-HC 243
           V  +D +   ++                   EF        +F   S D     A +   
Sbjct: 55  VTGIDINSEAIRLAETAARSPGLNQKTGGKAEFKVENASSLSFHDSSFDFAVMQAFLTSV 114

Query: 244 --WSSPSTGVAEISRVLRPGGVFV 265
                 S  + E+ RVL+PG    
Sbjct: 115 PDPKERSRIIKEVFRVLKPGAYLY 138

>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33 Length = 269

 Score = 63.0 bits (153), Expect = 1e-11
 Identities = 41/212 (19%), Positives = 71/212 (33%), Gaps = 51/212 (24%)

Query: 72  LACPICYKPLTWIGDSSLSIESAAGSSLQCNTC------KKTYSGVGTHFDMTAASGSKD 125
            +CP+C++PL+              +S  C         K+ Y     +        S+D
Sbjct: 3   FSCPLCHQPLSR-----------EKNSYICPQRHQFDMAKEGY----VNLLPVQHKRSRD 47

Query: 126 YGELMSPATEFFRMPFMSFIYERGWRQNFVWGGFPGPEKEFELMKGYLKPVLGGNIIDAS 185
            G+  S      R  F+   + +  R   V             ++  L       ++D  
Sbjct: 48  PGD--SAEMMQARRAFLDAGHYQPLRDAIV-----------AQLRERL-DDKATAVLDIG 93

Query: 186 CGSGLFSRIFAKSGLFSLVVALDYSENMLKQC------YEFVQ---QESNFPKDSIDAVH 236
           CG G ++  FA +        LD S+  +K          F         F   S+DA+ 
Sbjct: 94  CGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRYPQVTFCVASSHRLPFSDTSMDAI- 152

Query: 237 AGAAIHCWSSPSTGVAEISRVLRPGGVFVGTT 268
                    +P     E++RV++PGG  +  T
Sbjct: 153 -----IRIYAPCK-AEELARVVKPGGWVITAT 178

>2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str} Length = 259

 Score = 61.8 bits (150), Expect = 3e-11
 Identities = 20/161 (12%), Positives = 43/161 (26%), Gaps = 23/161 (14%)

Query: 173 LKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQC------YEFVQQ--E 224
           +      N  D  CG G  + +       +++  +D  ++ML++         F +    
Sbjct: 29  VPLERVLNGYDLGCGPGNSTELLTDRYGVNVITGIDSDDDMLEKAADRLPNTNFGKADLA 88

Query: 225 SNFPKDSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLL 284
           +  P    D ++A A           ++++   L  GGV               P    +
Sbjct: 89  TWKPAQKADLLYANAVFQWVPDHLAVLSQLMDQLESGGVLAVQMP---DNLQE-PTHIAM 144

Query: 285 RQNMMQ----------ISGSYTFLSEREIEDLCRACGL-VD 314
            +                         +  +        VD
Sbjct: 145 HETADGGPWKDAFSGGGLRRKPLPPPSDYFNALSPKSSRVD 185

>2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A Length = 202

 Score = 59.9 bits (145), Expect = 6e-11
 Identities = 25/135 (18%), Positives = 49/135 (36%), Gaps = 26/135 (19%)

Query: 151 RQNFVWGGFPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYS 210
           +  +V+G  P        +      +  G I+  + G G  +   A  G    V A+D S
Sbjct: 8   QSEYVYGTEPND-----FLVSVANQIPQGKILCLAEGEGRNACFLASLGYE--VTAVDQS 60

Query: 211 ENMLKQCYEFVQQES-------------NFPKDSIDAVHAGAAIHCWSSPS---TGVAEI 254
              L +  +  Q++              +   D+ + +    +I C    S       ++
Sbjct: 61  SVGLAKAKQLAQEKGVKITTVQSNLADFDIVADAWEGI---VSIFCHLPSSLRQQLYPKV 117

Query: 255 SRVLRPGGVFVGTTY 269
            + L+PGGVF+   +
Sbjct: 118 YQGLKPGGVFILEGF 132

>2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42 Length = 241

 Score = 58.5 bits (141), Expect = 3e-10
 Identities = 25/173 (14%), Positives = 44/173 (25%), Gaps = 29/173 (16%)

Query: 167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQC--------- 217
             ++           +D   G G  ++      LF  V  +D +E+ L Q          
Sbjct: 69  RFLREGPNKTGTSCALDCGAGIGRITKRLL-LPLFREVDMVDITEDFLVQAKTYLGEEGK 127

Query: 218 --YEFVQ---QESNFPKDSIDAVHAGAAIHCWSSP--STGVAEISRVLRPGGVFVGTTYI 270
               +     Q+     DS D +     I   +    +  +      LRP G+ V    +
Sbjct: 128 RVRNYFCCGLQDFTPEPDSYDVIWIQWVIGHLTDQHLAEFLRRCKGSLRPNGIIVIKDNM 187

Query: 271 VDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLCRACGLVDFKCTRNRGF 323
                 L                S        +  +  + GL      R    
Sbjct: 188 AQEGVILDDV------------DSSVCRDLDVVRRIICSAGLSLLAEERQENL 228

>3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413} Length = 245

 Score = 58.9 bits (142), Expect = 3e-10
 Identities = 22/144 (15%), Positives = 47/144 (32%), Gaps = 26/144 (18%)

Query: 146 YERGWRQNFVWGGFP----GPEKEFELMKGYLKPVL--GGNIIDASCGSGLFSRIFAKSG 199
           +E+ W +  V           E+   +     + +      +ID +CG+G  ++  ++  
Sbjct: 19  WEQYWNKTLVNSTPVLWDANVERAVVVDLPRFELLFNPELPLIDFACGNGTQTKFLSQ-- 76

Query: 200 LFSLVVALDYSENMLKQC----------YEFVQ-----QESNFPKDSIDA-VHAGAAIHC 243
            F  V+ LD S++ L+            Y  +      Q +    +  DA ++     H 
Sbjct: 77  FFPRVIGLDVSKSALEIAAKENTAANISYRLLDGLVPEQAAQIHSEIGDANIYMRTGFHH 136

Query: 244 WSSP--STGVAEISRVLRPGGVFV 265
                       +  +L   G   
Sbjct: 137 IPVEKRELLGQSLRILLGKQGAMY 160

>3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A* Length = 216

 Score = 57.1 bits (138), Expect = 7e-10
 Identities = 19/155 (12%), Positives = 49/155 (31%), Gaps = 21/155 (13%)

Query: 128 ELMSPATEFFRMPFMSFIYERGWRQNFVWGGFPGPEKEFELMKGYLKPVLGGNIIDASCG 187
            ++S    +  +       +  WR +         E+  +L++  L      N ++  C 
Sbjct: 6   TMVSVDNTYQSLE-RELANDDPWRLDDNPFE---RERHTQLLRLSLSSGAVSNGLEIGCA 61

Query: 188 SGLFSRIFAKSGLFSLVVALDYSENMLKQC---------YEFVQQ--ESNFPKDSIDAVH 236
           +G F+   A       +  +D     + +            +           +  D + 
Sbjct: 62  AGAFTEKLAPHC--KRLTVIDVMPRAIGRACQRTKRWSHISWAATDILQFSTAELFDLIV 119

Query: 237 AGAAIHCWSSPS---TGVAEISRVLRPGG-VFVGT 267
               ++     +   T +  + ++L PGG +  G+
Sbjct: 120 VAEVLYYLEDMTQMRTAIDNMVKMLAPGGHLVFGS 154

>3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus} Length = 230

 Score = 57.4 bits (139), Expect = 7e-10
 Identities = 23/160 (14%), Positives = 48/160 (30%), Gaps = 26/160 (16%)

Query: 178 GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQC---------YEFVQQESNFP 228
              ++D  C SG       ++G  + V  ++      +Q           +    +  + 
Sbjct: 33  WKEVLDIGCSSGALGAAIKENG--TRVSGIEAFPEAAEQAKEKLDHVVLGDIETMDMPYE 90

Query: 229 KDSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLR--- 285
           ++  D V  G  +     P   + ++   ++  GV + +      P N+   S L     
Sbjct: 91  EEQFDCVIFGDVLEHLFDPWAVIEKVKPYIKQNGVILASI-----P-NVSHISVLAPLLA 144

Query: 286 -QNMMQISGSYT-----FLSEREIEDLCRACGLVDFKCTR 319
                   G        F +  E+  +    G    K  R
Sbjct: 145 GNWTYTEYGLLDKTHIRFFTFNEMLRMFLKAGYSISKVDR 184

>2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens} Length = 215

 Score = 57.0 bits (137), Expect = 9e-10
 Identities = 31/150 (20%), Positives = 50/150 (33%), Gaps = 32/150 (21%)

Query: 147 ERGWRQNFVWGGFPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVA 206
                  + W G         L++  L+P     I+   CG+   S      G F  V +
Sbjct: 16  GAADSAPYDWFG--DFSSFRALLEPELRP--EDRILVLGCGNSALSYELFLGG-FPNVTS 70

Query: 207 LDYSENMLKQCY---------EFVQ---QESNFPKDSIDAVHAGAAIHC--------WSS 246
           +DYS  ++              +     ++ +FP  S D V     +          W+ 
Sbjct: 71  VDYSSVVVAAMQACYAHVPQLRWETMDVRKLDFPSASFDVVLEKGTLDALLAGERDPWTV 130

Query: 247 PSTGVAEISRVL-------RPGGVFVGTTY 269
            S GV  + +VL        PGG F+  T 
Sbjct: 131 SSEGVHTVDQVLSEVSRVLVPGGRFISMTS 160

>2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A* Length = 199

 Score = 55.9 bits (135), Expect = 1e-09
 Identities = 23/162 (14%), Positives = 48/162 (29%), Gaps = 24/162 (14%)

Query: 142 MSFIYERGWRQNFVWGGFPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLF 201
           M    E  +   +            E+++  +K V  G  +D  CG+G  S   A +G  
Sbjct: 3   MVIRDENYFTDKYELTRTHS-----EVLE-AVKVVKPGKTLDLGCGNGRNSLYLAANGYD 56

Query: 202 SLVVALDYSENMLKQ-----------CYEFVQQ--ESNFPKDSIDAVHAGAAIHCWSSP- 247
             V A D +   +                       +       D + +   +    +  
Sbjct: 57  --VDAWDKNAMSIANVERIKSIENLDNLHTRVVDLNNLTFDRQYDFILSTVVLMFLEAKT 114

Query: 248 -STGVAEISRVLRPGGVFVGTTYIVDGPFNL-IPFSRLLRQN 287
               +A + R  +PGG  +    +    +   + F    ++ 
Sbjct: 115 IPGLIANMQRCTKPGGYNLIVAAMDTADYPCTVGFPFAFKEG 156

>3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis} Length = 305

 Score = 56.2 bits (135), Expect = 3e-09
 Identities = 31/200 (15%), Positives = 56/200 (28%), Gaps = 38/200 (19%)

Query: 167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSL-VVALDYSENMLKQC-------- 217
             ++ +L+P  G  +    CG          S    + +V +DY    L           
Sbjct: 110 RALQRHLRP--GCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLAAGHA 167

Query: 218 ----YEFVQQE-SNFP-KDSIDAVHAGAAIHCWSSPSTGVA---EISRVLRPGGVFVGTT 268
                   +Q+      ++  D + +          +          + L+PGG  V  T
Sbjct: 168 LAGQITLHRQDAWKLDTREGYDLLTSNGLNIYEPDDARVTELYRRFWQALKPGGALV--T 225

Query: 269 YIVDGPFNLIPFSRLLRQNMMQ-------------ISGSYT-FLSEREIEDLCRACGLVD 314
             +  P  L P S    Q +               I   +    +  +        G  D
Sbjct: 226 SFLTPPPALSPDSPWDMQAIDPHDLQLQQLVFTRLIQPRWNALRTHAQTRAQLEEAGFTD 285

Query: 315 FKCTRNRG--FVMFTATKPS 332
            +   +R   F    A KP+
Sbjct: 286 LRFEDDRARLFPTVIARKPA 305

>1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43 Length = 246

 Score = 55.9 bits (135), Expect = 3e-09
 Identities = 20/121 (16%), Positives = 40/121 (33%), Gaps = 20/121 (16%)

Query: 163 EKEFELMKGYLK--PVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYE- 219
           +K  + +        ++  + +D +CG+G  +             A+D S+ ML +    
Sbjct: 21  KKWSDFIIEKCVENNLVFDDYLDLACGTGNLTENLCPKFKN--TWAVDLSQEMLSEAENK 78

Query: 220 ---------FVQQE-SNFP-KDSIDAVH-AGAAIHCWSSPS---TGVAEISRVLRPGGVF 264
                       Q+ SN       D +     + +              +S  L+ GGVF
Sbjct: 79  FRSQGLKPRLACQDISNLNINRKFDLITCCLDSTNYIIDSDDLKKYFKAVSNHLKEGGVF 138

Query: 265 V 265
           +
Sbjct: 139 I 139

>3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus} Length = 240

 Score = 55.3 bits (133), Expect = 4e-09
 Identities = 27/166 (16%), Positives = 52/166 (31%), Gaps = 22/166 (13%)

Query: 164 KEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQC---YEF 220
                   Y K      ++D  CG G F  +  + G+    + +D +E+M+K C   +  
Sbjct: 30  ARLRRYIPYFKG--CRRVLDIGCGRGEFLELCKEEGIE--SIGVDINEDMIKFCEGKFNV 85

Query: 221 VQQE-----SNFPKDSIDAVHAGAAI-HCWS-SPSTGVAEISRVLRPGGVFVGTTYIVDG 273
           V+ +      + P   +D V     + H         ++     ++     V  +     
Sbjct: 86  VKSDAIEYLKSLPDKYLDGVMISHFVEHLDPERLFELLSLCYSKMKYSSYIVIES----- 140

Query: 274 PFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLCRACGLVDFKCTR 319
           P N  P S     N          +    ++ +    G  D K   
Sbjct: 141 P-N--PTSLYSLINFYIDPTHKKPVHPETLKFILEYLGFRDVKIEF 183

>3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A* Length = 293

 Score = 55.0 bits (132), Expect = 7e-09
 Identities = 28/158 (17%), Positives = 59/158 (37%), Gaps = 36/158 (22%)

Query: 137 FRMPFMSFIYERGWRQNFVWGGFPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFA 196
           +     + +++      ++        +    + G L+      ++D +CG+G+ S +  
Sbjct: 22  YADGEAARVWQL-----YIGDTRSRTAEYKAWLLGLLRQHGCHRVLDVACGTGVDSIMLV 76

Query: 197 KSGLFSLVVALDYSENMLKQCYE-------------FVQQESNF--------PKDSIDAV 235
           + G    V ++D S+ MLK   +             +V +E+N+          D  DAV
Sbjct: 77  EEGFS--VTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDVPAGDGFDAV 134

Query: 236 -HAGAAIHCWSSPSTG-------VAEISRVLRPGGVFV 265
              G +                 +  I+ ++RPGG+ V
Sbjct: 135 ICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLV 172

>3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae} Length = 239

 Score = 54.4 bits (131), Expect = 9e-09
 Identities = 25/122 (20%), Positives = 44/122 (36%), Gaps = 16/122 (13%)

Query: 167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYE------F 220
           +L++         +++D +CG+G     F K         L+ SE+ML    +       
Sbjct: 32  DLVRSRTPE--ASSLLDVACGTGTHLEHFTKEFGD--TAGLELSEDMLTHARKRLPDATL 87

Query: 221 VQQE-SNFP-KDSIDAVH-AGAAIHCWSSPS---TGVAEISRVLRPGGVFVGTTYIVDGP 274
            Q +  +F       AV    +++    +       VA  +  L PGGV V   +     
Sbjct: 88  HQGDMRDFRLGRKFSAVVSMFSSVGYLKTTEELGAAVASFAEHLEPGGVVVVEPWWFPET 147

Query: 275 FN 276
           F 
Sbjct: 148 FA 149

>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405} Length = 197

 Score = 53.4 bits (128), Expect = 1e-08
 Identities = 20/129 (15%), Positives = 39/129 (30%), Gaps = 28/129 (21%)

Query: 167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQC-------- 217
           + +K ++K   G  ++DA+CG+G  +   A   G    V   D  +  +           
Sbjct: 14  DYIKMFVKE--GDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLN 71

Query: 218 ----YEFVQQESNFPKDSIDAVHAGAAIHCWSSPSTG-------------VAEISRVLRP 260
                  ++         ID        +    PS               +++   +L  
Sbjct: 72  LIDRVTLIKDGHQNMDKYIDCPVKAVMFNLGYLPSGDHSISTRPETTIQALSKAMELLVT 131

Query: 261 GGVFVGTTY 269
           GG+     Y
Sbjct: 132 GGIITVVIY 140

>3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A* Length = 263

 Score = 54.1 bits (130), Expect = 1e-08
 Identities = 22/128 (17%), Positives = 44/128 (34%), Gaps = 16/128 (12%)

Query: 163 EKEFELMKGYLK--PVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYE- 219
            +E   +   ++       +++D +CG+G+  R  A S     V  L+ S +ML      
Sbjct: 34  HREAADLAALVRRHSPKAASLLDVACGTGMHLRHLADSFGT--VEGLELSADMLAIARRR 91

Query: 220 -----FVQQE-SNFP-KDSIDAVH-AGAAIHCWSSPS---TGVAEISRVLRPGGVFVGTT 268
                    +  +F       AV    ++I   +  +     +   +  + P GV V   
Sbjct: 92  NPDAVLHHGDMRDFSLGRRFSAVTCMFSSIGHLAGQAELDAALERFAAHVLPDGVVVVEP 151

Query: 269 YIVDGPFN 276
           +     F 
Sbjct: 152 WWFPENFT 159

>1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43 Length = 252

 Score = 53.7 bits (129), Expect = 1e-08
 Identities = 28/121 (23%), Positives = 51/121 (42%), Gaps = 20/121 (16%)

Query: 163 EKEFELMKGYLK---PVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYE 219
           + E + ++   K         ++D +CG+G+ +   A+ G    VV LD  E ML+    
Sbjct: 24  KAEIDFVEEIFKEDAKREVRRVLDLACGTGIPTLELAERGY--EVVGLDLHEEMLRVARR 81

Query: 220 ----------FVQQE-SNFP-KDSIDAVHA-GAAIHCWSSPS--TGVAEISRVLRPGGVF 264
                     F+Q +      K+  DAV    + I  +         ++++  L+PGGVF
Sbjct: 82  KAKERNLKIEFLQGDVLEIAFKNEFDAVTMFFSTIMYFDEEDLRKLFSKVAEALKPGGVF 141

Query: 265 V 265
           +
Sbjct: 142 I 142

>3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15} Length = 243

 Score = 53.2 bits (128), Expect = 2e-08
 Identities = 23/119 (19%), Positives = 42/119 (35%), Gaps = 21/119 (17%)

Query: 163 EKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYE--- 219
            +    +   ++P  G  I D  CG+G  + + A    +  V  +D SE ML+   E   
Sbjct: 21  PEWVAWVLEQVEP--GKRIADIGCGTGTATLLLADH--YE-VTGVDLSEEMLEIAQEKAM 75

Query: 220 -------FVQQ---ESNFPKDSIDAVHAGAAIHCWSSPS---TGVAEISRVLRPGGVFV 265
                  F  Q   E   P+          +++   + +         +R+L  GG  +
Sbjct: 76  ETNRHVDFWVQDMRELELPEPVDAITILCDSLNYLQTEADVKQTFDSAARLLTDGGKLL 134

>1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A* Length = 298

 Score = 52.4 bits (125), Expect = 6e-08
 Identities = 24/132 (18%), Positives = 40/132 (30%), Gaps = 23/132 (17%)

Query: 168 LMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYE-------- 219
           L++ Y K   G +++D  CG G     + ++G       +D +E  +             
Sbjct: 57  LIRLYTKR--GDSVLDLGCGKGGDLLKYERAG-IGEYYGVDIAEVSINDARVRARNMKRR 113

Query: 220 --------FVQQESNFPKDSIDAVHAGAAIHC----WSSPSTGVAEISRVLRPGGVFVGT 267
                                D + +  + H       S       I+R LRPGG F+ T
Sbjct: 114 FKVFFRAQDSYGRHMDLGKEFDVISSQFSFHYAFSTSESLDIAQRNIARHLRPGGYFIMT 173

Query: 268 TYIVDGPFNLIP 279
               D       
Sbjct: 174 VPSRDVILERYK 185

>3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A* Length = 299

 Score = 52.2 bits (125), Expect = 7e-08
 Identities = 20/108 (18%), Positives = 35/108 (32%), Gaps = 23/108 (21%)

Query: 178 GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKDSIDAVHA 237
            G +++ + G G  +  F   G    V AL+ S ++L    + + +     +D    V  
Sbjct: 83  SGPVLELAAGMGRLTFPFLDLGW--EVTALELSTSVLAAFRKRLAEAPADVRDRCTLVQG 140

Query: 238 GA----------AIHCWSSPSTG----------VAEISRVLRPGGVFV 265
                        +   S  S             A +   L PGG F+
Sbjct: 141 DMSAFALDKRFGTVVISSG-SINELDEADRRGLYASVREHLEPGGKFL 187

>2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A* Length = 292

 Score = 52.0 bits (124), Expect = 8e-08
 Identities = 15/164 (9%), Positives = 40/164 (24%), Gaps = 36/164 (21%)

Query: 180 NIIDASCGSGLFSRIFAK------SGLFSLVVALDYSENMLKQCYEFVQQESNF------ 227
            I+    G+G               G+      ++ S   + +  E V + SN       
Sbjct: 55  KILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKTSNLENVKFA 114

Query: 228 -----------------PKDSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYI 270
                                 D +H    ++        +     +L      +     
Sbjct: 115 WHKETSSEYQSRMLEKKELQKWDFIHMIQMLYYVKDIPATLKFFHSLLGTNAKMLIIVVS 174

Query: 271 VDGPFNLI--PFSRLLRQNMMQISGSYTFLSEREIEDLCRACGL 312
               ++ +   +     Q+         +++  ++  +    GL
Sbjct: 175 GSSGWDKLWKKYGSRFPQD-----DLCQYITSDDLTQMLDNLGL 213

>3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* Length = 312

 Score = 51.8 bits (124), Expect = 9e-08
 Identities = 33/212 (15%), Positives = 52/212 (24%), Gaps = 64/212 (30%)

Query: 144 FIYERGWRQNFV-WGGFPGPEKEFEL--------MKGYLKPVLGGNIIDASCGSGLFSRI 194
                G  ++              E           G   P     ++DA CG G    +
Sbjct: 77  DRAALGDPEHSEYEKKVIAELHRLESAQAEFLMDHLGQAGP--DDTLVDAGCGRGGSMVM 134

Query: 195 FAKSGLFSLVVALDYSENMLKQCYEFVQQES---------------NFPKDSIDAVHAGA 239
             +      V  +  S           ++                  F K ++ A     
Sbjct: 135 AHRRFGSR-VEGVTLSAAQADFGNRRARELRIDDHVRSRVCNMLDTPFDKGAVTAS---- 189

Query: 240 AIHCWSSPSTGVA-------EISRVLRPGGVFVGTTYIVDGPF----------------N 276
               W++ ST          E SR L+ GG +V  T   +  +                N
Sbjct: 190 ----WNNESTMYVDLHDLFSEHSRFLKVGGRYVTITGCWNPRYGQPSKWVSQINAHFECN 245

Query: 277 LIPFSRLLRQNMMQISGSYTFLSEREIEDLCR 308
           +      LR   M  +     L    I DL  
Sbjct: 246 IHSRREYLR--AMADNR----LVPHTIVDLTP 271

>3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae} Length = 286

 Score = 51.5 bits (123), Expect = 9e-08
 Identities = 23/180 (12%), Positives = 54/180 (30%), Gaps = 21/180 (11%)

Query: 130 MSPATEFFRMPFMS----FIYERGWRQNFVWGGFPGPEKEFELMKGYLKPVLGGNIIDAS 185
                 + R+  +S           ++   +            +    K +    ++D  
Sbjct: 69  FVEPQAWHRVEALSDDLECTLGFYCKKEDYFSKKYNTTAIHGDVVDAAKIISPCKVLDLG 128

Query: 186 CGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQE------------SNFPKDSID 233
           CG G  S   +  G    V + D++EN +    E  ++E            +   +++ D
Sbjct: 129 CGQGRNSLYLSLLGYD--VTSWDHNENSIAFLNETKEKENLNISTALYDINAANIQENYD 186

Query: 234 AVHAGAAIHCWSSPSTG--VAEISRVLRPGG-VFVGTTYIVDGPFNLIPFSRLLRQNMMQ 290
            + +       +       +  +      GG   +      D     +PFS    +N ++
Sbjct: 187 FIVSTVVFMFLNRERVPSIIKNMKEHTNVGGYNLIVAAMSTDDVPCPLPFSFTFAENELK 246

>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A* Length = 185

 Score = 49.5 bits (118), Expect = 2e-07
 Identities = 24/127 (18%), Positives = 39/127 (30%), Gaps = 28/127 (22%)

Query: 167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQC--------- 217
           + +   L       ++DA+ G+G  +   A  GL   V A D  E  L +          
Sbjct: 14  DFLAEVLDD--ESIVVDATMGNGNDTAFLA--GLSKKVYAFDVQEQALGKTSQRLSDLGI 69

Query: 218 --YEFVQQES----NFPKDSIDAVHA------GAAIHCWSSPSTGVAEIS---RVLRPGG 262
              E +        ++ ++ I A          A     + P T +  I      L  GG
Sbjct: 70  ENTELILDGHENLDHYVREPIRAAIFNLGYLPSADKSVITKPHTTLEAIEKILDRLEVGG 129

Query: 263 VFVGTTY 269
                 Y
Sbjct: 130 RLAIMIY 136

>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A Length = 219

 Score = 49.2 bits (117), Expect = 4e-07
 Identities = 21/117 (17%), Positives = 34/117 (29%), Gaps = 21/117 (17%)

Query: 172 YLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQ-------- 223
            LK V    +ID  CG G    +  K   F  +  +D S ++L++  + ++         
Sbjct: 24  VLKSVNAKKVIDLGCGEGNLLSLLLKDKSFEQITGVDVSYSVLERAKDRLKIDRLPEMQR 83

Query: 224 -----------ESNFPKDSIDAVHAGAAIHCWSSP--STGVAEISRVLRPGGVFVGT 267
                        +      DA      I              +    RP  V V T
Sbjct: 84  KRISLFQSSLVYRDKRFSGYDAATVIEVIEHLDENRLQAFEKVLFEFTRPQTVIVST 140

>2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A Length = 250

 Score = 49.5 bits (118), Expect = 4e-07
 Identities = 20/218 (9%), Positives = 55/218 (25%), Gaps = 38/218 (17%)

Query: 123 SKDYGELMSPATEFFRMPFMSFIYERGWRQNFVWGGFPGPEKEFELMKGYLKPVLGGNII 182
           S++Y + +            +F ++                    +++ +      GN++
Sbjct: 5   SRNYDQEIKDTAGH--KYAYNFDFDVMHP---------------FMVRAFTPFFRPGNLL 47

Query: 183 DASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKDSIDAVHAGA--- 239
           +     G F+    +    + +  ++ SE  +      ++    +     +         
Sbjct: 48  ELGSFKGDFTSRLQEHF--NDITCVEASEEAISHAQGRLKDGITYIHSRFEDAQLPRRYD 105

Query: 240 AIHCW------SSPSTGVAEI-SRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQIS 292
            I           P   +  I    L  GG         +     I     +  +   ++
Sbjct: 106 NIVLTHVLEHIDDPVALLKRINDDWLAEGGRLFLVCPNANAVSRQIAVKMGIISHNSAVT 165

Query: 293 GSYT------FLSEREIEDLCRACGLVDFKCTRNRGFV 324
            +          +   +E      G    + T   G  
Sbjct: 166 EAEFAHGHRCTYALDTLERDASRAG---LQVTYRSGIF 200

>3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana} Length = 235

 Score = 48.1 bits (114), Expect = 9e-07
 Identities = 26/150 (17%), Positives = 39/150 (26%), Gaps = 23/150 (15%)

Query: 150 WRQNFV-W-GGFPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVAL 207
           W +    W  G   P     +    L     G  +   CG G      A    F  VV L
Sbjct: 40  WEEEITPWDQGRATPLIVHLVDTSSLPL---GRALVPGCGGGHDVVAMASPERF--VVGL 94

Query: 208 DYSENMLKQCYEFVQQESN--------------FPKDSIDAVHAGAAIHCWSSP--STGV 251
           D SE+ L +  E                      P +  D +                  
Sbjct: 95  DISESALAKANETYGSSPKAEYFSFVKEDVFTWRPTELFDLIFDYVFFCAIEPEMRPAWA 154

Query: 252 AEISRVLRPGGVFVGTTYIVDGPFNLIPFS 281
             +  +L+P G  +   Y +       P+ 
Sbjct: 155 KSMYELLKPDGELITLMYPITDHVGGPPYK 184

>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A Length = 217

 Score = 47.2 bits (112), Expect = 2e-06
 Identities = 21/117 (17%), Positives = 31/117 (26%), Gaps = 21/117 (17%)

Query: 172 YLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQC-------------- 217
            LK      +ID  CG G   +I  K   F  +  +D S   L+                
Sbjct: 24  ALKQSNARRVIDLGCGQGNLLKILLKDSFFEQITGVDVSYRSLEIAQERLDRLRLPRNQW 83

Query: 218 --YEFVQQ---ESNFPKDSIDAVHAGAAIHCWSSP--STGVAEISRVLRPGGVFVGT 267
              + +Q      +      DA      I              +    +P  V V T
Sbjct: 84  ERLQLIQGALTYQDKRFHGYDAATVIEVIEHLDLSRLGAFERVLFEFAQPKIVIVTT 140

>2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus} Length = 302

 Score = 45.5 bits (107), Expect = 1e-05
 Identities = 19/131 (14%), Positives = 40/131 (30%), Gaps = 32/131 (24%)

Query: 170 KGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESN--- 226
           K +L       ++    G+G     +      +L+VA D   + + +  E   + ++   
Sbjct: 41  KTFLDDSNKRKVLAIDFGNGADLEKYFYGE-IALLVATDPDADAIARGNERYNKLNSGIK 99

Query: 227 -------------------------FPKDSIDAVHAGAAIH-CWSSP--STGVAEISRVL 258
                                    F     + +    AIH  +     +T +  +S + 
Sbjct: 100 TKYYKFDYIQETIRSDTFVSSVREVFYFGKFNIIDWQFAIHYSFHPRHYATVMNNLSELT 159

Query: 259 RPGGVFVGTTY 269
             GG  + TT 
Sbjct: 160 ASGGKVLITTM 170

>3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei} Length = 275

 Score = 44.2 bits (104), Expect = 3e-05
 Identities = 15/118 (12%), Positives = 28/118 (23%), Gaps = 27/118 (22%)

Query: 173 LKPVLGGNIIDASCGSGLFSRIFAK-SGLFSLVVALDYSENMLKQCY------------- 218
           +KP  G  I++  CG G  S + A   G    V  +D +                     
Sbjct: 41  VKP--GEKILEIGCGQGDLSAVLADQVGSSGHVTGIDIASPDYGAPLTLGQAWNHLLAGP 98

Query: 219 -----EFVQQESN------FPKDSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFV 265
                      +             D V    ++  ++S +        +        
Sbjct: 99  LGDRLTVHFNTNLSDDLGPIADQHFDRVVLAHSLWYFASANALALLFKNMAAVCDHVD 156

>2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens} Length = 215

 Score = 43.5 bits (102), Expect = 3e-05
 Identities = 15/118 (12%), Positives = 36/118 (30%), Gaps = 14/118 (11%)

Query: 152 QNFVWGGFPGPEKEFELMKGYLKPVLGG-NIIDASCGSGLFSRIFAKSGLFSLVVALDYS 210
           + F       P +  + +   L+       + D  CG    +                + 
Sbjct: 41  RGFQSQVKKWPLQPVDRIARDLRQRPASLVVADFGCGDCRLASSIRNPV---------HC 91

Query: 211 ENMLKQCYEFVQQESN---FPKDSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFV 265
            ++          +        +S+D      ++   ++    + E +RVL+PGG+  
Sbjct: 92  FDLASLDPRVTVCDMAQVPLEDESVDVAVFCLSLM-GTNIRDFLEEANRVLKPGGLLK 148

>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli} Length = 375

 Score = 43.3 bits (102), Expect = 6e-05
 Identities = 37/230 (16%), Positives = 59/230 (25%), Gaps = 62/230 (26%)

Query: 132 PATEFFRMPFMSFIYERGWRQNFVWGGFPGPEKEF--ELMKGYLKPVLGGNIIDASCGSG 189
           P            +    W  +     F     +        +L   L G I+D  CG+G
Sbjct: 175 PQLADAPQTVSWKLEGTDWTIHNHANVFSRTGLDIGARFFMQHLPENLEGEIVDLGCGNG 234

Query: 190 LFSRIFAKSGLFSLVVALDYSE------------NMLKQCY--EFVQQE--SNFPKDSID 233
           +           + VV +D S             NM +     EF+     S       +
Sbjct: 235 VIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSGVEPFRFN 294

Query: 234 AV------HAGAAIHCWSSPSTG---VAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLL 284
           AV      H   A+      +          R L+  G      YIV             
Sbjct: 295 AVLCNPPFHQQHALT----DNVAWEMFHHARRCLKINGEL----YIV------------- 333

Query: 285 RQNMMQISGSYTFLS-EREIEDLCRACGLVDFKCTRNRGFVMFTATKPSQ 333
                    +   L    +++ +   C  +      N  FV+  A K   
Sbjct: 334 ---------ANRHLDYFHKLKKIFGNCTTI----ATNNKFVVLKAVKLEH 370

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 43.7 bits (102), Expect = 7e-05
 Identities = 47/243 (19%), Positives = 73/243 (30%), Gaps = 80/243 (32%)

Query: 124 KDYGELMSPATEFFRMPFM---SFIYERG--WRQN--FVWGGFPGPEKEFELMKGY--LK 174
            +Y  LMSP     R P M    +I +R   +  N  F        +   +L +    L+
Sbjct: 89  INYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELR 148

Query: 175 PVLGGNI-IDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKDSID 233
           P    N+ ID   GSG       K+ + +L V L Y           VQ + +F      
Sbjct: 149 P--AKNVLIDGVLGSG-------KTWV-ALDVCLSYK----------VQCKMDFK----- 183

Query: 234 AVHAGAAIHCWSSPSTGVAEISRVLRPGGVF---VGTTYIVDGPFNLIP-FSRLLRQNMM 289
                  I  W +       +     P  V        Y +D  +      S  ++  + 
Sbjct: 184 -------IF-WLN-------LKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIH 228

Query: 290 QISGSY-TFLSEREIEDLCRACGLV-------------DFKC-----TRNRG---FVMFT 327
            I       L  +  E+    C LV             +  C     TR +    F+   
Sbjct: 229 SIQAELRRLLKSKPYEN----CLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAA 284

Query: 328 ATK 330
            T 
Sbjct: 285 TTT 287

>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana} Length = 950

 Score = 41.0 bits (95), Expect = 5e-04
 Identities = 15/119 (12%), Positives = 30/119 (25%), Gaps = 23/119 (19%)

Query: 172 YLKPVLGGNIIDASCGSGLFSRIFAK-SGLFSLVVALDYSENMLK--------------- 215
           +++      ++D  CGSG               ++ +D S   L                
Sbjct: 716 HIRESSASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVKLNKEAC 775

Query: 216 -----QCYEFVQQESNFPKDSIDAVHAGAAIHCWSSP--STGVAEISRVLRPGGVFVGT 267
                  Y+    E +     +D       I             ++  +  P  + V T
Sbjct: 776 NVKSATLYDGSILEFDSRLHDVDIGTCLEVIEHMEEDQACEFGEKVLSLFHPKLLIVST 834

>1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A* Length = 359

 Score = 40.1 bits (94), Expect = 6e-04
 Identities = 19/119 (15%), Positives = 39/119 (32%), Gaps = 20/119 (16%)

Query: 226 NFPKDSI---DAVHAGAAIHCWSSPSTG--VAEISRVLRPGGVFVGTTYIVD-------- 272
           +  K+S    DAV     ++  +   +     +    +R GG  +    I+D        
Sbjct: 248 DIYKESYPEADAVLFCRILYSANEQLSTIMCKKAFDAMRSGGRLL----ILDMVIDDPEN 303

Query: 273 GPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLCRACGLVDFKCTRNRGFVMFTATKP 331
             F+ +    L       + G      +   +++  + G  D    R    ++  A KP
Sbjct: 304 PNFDYLSHYILGAGMPFSVLGFKE---QARYKEILESLGYKDVTMVRKYDHLLVQAVKP 359

>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21 Length = 256

 Score = 39.4 bits (92), Expect = 7e-04
 Identities = 27/156 (17%), Positives = 50/156 (32%), Gaps = 24/156 (15%)

Query: 173 LKPVLGGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQQE------- 224
           +KP  G  I+D   GSG     +A+  G+      +D S     Q     ++        
Sbjct: 34  MKP--GTRILDLGSGSGEMLCTWARDHGI--TGTGIDMSSLFTAQAKRRAEELGVSERVH 89

Query: 225 -------SNFPKDSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNL 277
                       +  D      A       +     +++ L+PGG+ +    I +  +  
Sbjct: 90  FIHNDAAGYVANEKCDVAACVGATWIAGGFAGAEELLAQSLKPGGIML----IGEPYWRQ 145

Query: 278 IPFSRLLRQNMMQISGSYTFLSEREIEDLCRACGLV 313
           +P +  + Q     S S  FL+   +       G  
Sbjct: 146 LPATEEIAQACGVSSTSD-FLTLPGLVGAFDDLGYD 180

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	334
4e2x_A	416	TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s	99.92
4gek_A	261	TRNA (CMO5U34)-methyltransferase; structural genom	99.87
3dtn_A	234	Putative methyltransferase MM_2633; structural gen	99.86
3hnr_A	220	Probable methyltransferase BT9727_4108; structural	99.86
3dlc_A	219	Putative S-adenosyl-L-methionine-dependent methylt	99.85
3dh0_A	219	SAM dependent methyltransferase; cystal structure,	99.84
1vl5_A	260	Unknown conserved protein BH2331; putative methylt	99.84
3bus_A	273	REBM, methyltransferase; rebeccamycin synthesis; H	99.83
1xxl_A	239	YCGJ protein; structural genomics, protein structu	99.82
2p7i_A	250	Hypothetical protein; putative methyltransferase,	99.82
3e23_A	211	Uncharacterized protein RPA2492; alpha-beta protei	99.82
2o57_A	297	Putative sarcosine dimethylglycine methyltransfera	99.81
3dli_A	240	Methyltransferase; PSI-II, NYSGXRC, structural gen	99.81
3l8d_A	242	Methyltransferase; structural genomics, PSI, nysgr	99.81
3ujc_A	266	Phosphoethanolamine N-methyltransferase; parasite;	99.81
1nkv_A	256	Hypothetical protein YJHP; structural genomics, PS	99.81
3kkz_A	267	Uncharacterized protein Q5LES9; putative methyltra	99.81
3f4k_A	257	Putative methyltransferase; structural genomics, P	99.8
3mgg_A	276	Methyltransferase; NYSGXRC, PSI-II, protein struct	99.8
3mcz_A	352	O-methyltransferase; adomet_mtases, S-adenosylmeth	99.8
3h2b_A	203	SAM-dependent methyltransferase; alpha-beta protei	99.8
3ccf_A	279	Cyclopropane-fatty-acyl-phospholipid synthase; YP_	99.8
2aot_A	292	HMT, histamine N-methyltransferase; classic methyl	99.8
3i9f_A	170	Putative type 11 methyltransferase; structural gen	99.79
3g5l_A	253	Putative S-adenosylmethionine dependent methyltran	99.79
3vc1_A	312	Geranyl diphosphate 2-C-methyltransferase; rossman	99.79
4htf_A	285	S-adenosylmethionine-dependent methyltransferase;	99.79
3ocj_A	305	Putative exported protein; structural genomics, PS	99.79
3jwh_A	217	HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena	99.79
1kpg_A	287	CFA synthase;, cyclopropane-fatty-acyl-phospholipi	99.78
2a14_A	263	Indolethylamine N-methyltransferase; SGC,INMT, str	99.78
3ou2_A	218	SAM-dependent methyltransferase; O-methyltransfera	99.78
3sm3_A	235	SAM-dependent methyltransferases; NESG, structural	99.78
1y8c_A	246	S-adenosylmethionine-dependent methyltransferase;	99.78
3jwg_A	219	HEN1, methyltransferase type 12; 1.90A {Clostridiu	99.78
2p35_A	259	Trans-aconitate 2-methyltransferase; SAM dependent	99.78
3hem_A	302	Cyclopropane-fatty-acyl-phospholipid synthase 2; p	99.78
1p91_A	269	Ribosomal RNA large subunit methyltransferase A; R	99.77
3bkw_A	243	MLL3908 protein, S-adenosylmethionine dependent me	99.77
3gwz_A	369	MMCR; methyltransferase, mitomycin, S-adenosyl met	99.77
1xtp_A	254	LMAJ004091AAA; SGPP, structural genomics, PSI, pro	99.76
1vlm_A	219	SAM-dependent methyltransferase; possible histamin	99.76
1x19_A	359	CRTF-related protein; methyltransferase, bacterioc	99.76
3gu3_A	284	Methyltransferase; alpha-beta protein, structural	99.76
3cc8_A	230	Putative methyltransferase; structural genomics, j	99.76
3pfg_A	263	N-methyltransferase; N,N-dimethyltransferase, SAM	99.76
3ege_A	261	Putative methyltransferase from antibiotic biosyn	99.76
3thr_A	293	Glycine N-methyltransferase; GNMT, folate, methylt	99.76
2r3s_A	335	Uncharacterized protein; methyltransferase domain,	99.76
3i53_A	332	O-methyltransferase; CO-complex, rossmann-like fol	99.75
3lcc_A	235	Putative methyl chloride transferase; halide methy	99.75
3e8s_A	227	Putative SAM dependent methyltransferase; NP_74470	99.75
2yqz_A	263	Hypothetical protein TTHA0223; RNA methyltransfera	99.75
2ex4_A	241	Adrenal gland protein AD-003; methyltransferase, s	99.75
2fk8_A	318	Methoxy mycolic acid synthase 4; S-adenosylmethion	99.75
2xvm_A	199	Tellurite resistance protein TEHB; antibiotic resi	99.74
2gs9_A	211	Hypothetical protein TT1324; methyl transferase, s	99.74
4fsd_A	383	Arsenic methyltransferase; rossmann fold; 1.75A {C	99.74
3bkx_A	275	SAM-dependent methyltransferase; YP_807781.1, cycl	99.74
2i62_A	265	Nicotinamide N-methyltransferase; structural genom	99.74
1qzz_A	374	RDMB, aclacinomycin-10-hydroxylase; anthracycline,	99.74
1tw3_A	360	COMT, carminomycin 4-O-methyltransferase; anthracy	99.73
2g72_A	289	Phenylethanolamine N-methyltransferase; HET: SAM F	99.73
2ip2_A	334	Probable phenazine-specific methyltransferase; pyo	99.72
1pjz_A	203	Thiopurine S-methyltransferase; polymorphism, S-ad	99.72
3d2l_A	243	SAM-dependent methyltransferase; ZP_00538691.1, st	99.72
3bxo_A	239	N,N-dimethyltransferase; desosamine, sugar, carboh	99.72
3dp7_A	363	SAM-dependent methyltransferase; structural genomi	99.72
4a6d_A	353	Hydroxyindole O-methyltransferase; melatonin, circ	99.72
3cgg_A	195	SAM-dependent methyltransferase; NP_600671.1, meth	99.71
1ve3_A	227	Hypothetical protein PH0226; dimer, riken structur	99.7
3lst_A	348	CALO1 methyltransferase; calicheamicin, enediyne,	99.7
3g2m_A	299	PCZA361.24; SAM-dependent methyltransferase, glyco	99.69
3g5t_A	299	Trans-aconitate 3-methyltransferase; structural ge	99.69
4hg2_A	257	Methyltransferase type 11; structural genomics, PS	99.69
3reo_A	368	(ISO)eugenol O-methyltransferase; directed evoluti	99.69
3g07_A	292	7SK snRNA methylphosphate capping enzyme; structur	99.69
2gb4_A	252	Thiopurine S-methyltransferase; 18204406, thiopuri	99.69
2vdw_A	302	Vaccinia virus capping enzyme D1 subunit; nucleoti	99.68
1fp1_D	372	Isoliquiritigenin 2'-O-methyltransferase; protein-	99.67
2kw5_A	202	SLR1183 protein; structural genomics, northeast st	99.67
2qe6_A	274	Uncharacterized protein TFU_2867; putative methylt	99.67
3p9c_A	364	Caffeic acid O-methyltransferase; S-adenosylmethio	99.66
3m70_A	286	Tellurite resistance protein TEHB homolog; structu	99.66
1wzn_A	252	SAM-dependent methyltransferase; structural genomi	99.65
1ri5_A	298	MRNA capping enzyme; methyltransferase, M7G, messe	99.65
3grz_A	205	L11 mtase, ribosomal protein L11 methyltransferase	99.65
3ggd_A	245	SAM-dependent methyltransferase; YP_325210.1, stru	99.65
2p8j_A	209	S-adenosylmethionine-dependent methyltransferase;	99.65
2zfu_A	215	Nucleomethylin, cerebral protein 1; nucleolar prot	99.65
3ofk_A	216	Nodulation protein S; NODS, N-methyltransferase, S	99.64
3e05_A	204	Precorrin-6Y C5,15-methyltransferase (decarboxyla;	99.64
1fp2_A	352	Isoflavone O-methyltransferase; protein-product co	99.64
4df3_A	233	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	99.63
3orh_A	236	Guanidinoacetate N-methyltransferase; structura ge	99.63
1fbn_A	230	MJ fibrillarin homologue; MJ proteins, ribosomal R	99.62
2nxc_A	254	L11 mtase, ribosomal protein L11 methyltransferase	99.61
3htx_A	950	HEN1; HEN1, small RNA methyltransferase, protein-R	99.61
2pxx_A	215	Uncharacterized protein MGC2408; structural genomi	99.59
3hm2_A	178	Precorrin-6Y C5,15-methyltransferase; alpha-beta-s	99.59
1zg3_A	358	Isoflavanone 4'-O-methyltransferase; rossman fold,	99.59
1dus_A	194	MJ0882; hypothetical protein, methanococcus jannas	99.58
1l3i_A	192	Precorrin-6Y methyltransferase/putative decarboxyl	99.58
2avn_A	260	Ubiquinone/menaquinone biosynthesis methyltransfe	99.58
3fzg_A	200	16S rRNA methylase; methyltransferase, plasmid, tr	99.57
3njr_A	204	Precorrin-6Y methylase; methyltransferase, decarbo	99.56
2ld4_A	176	Anamorsin; methyltransferase-like fold, alpha/beta	99.56
2b3t_A	276	Protein methyltransferase HEMK; translation termin	99.55
1yb2_A	275	Hypothetical protein TA0852; structural genomics,	99.55
3iv6_A	261	Putative Zn-dependent alcohol dehydrogenase; alpha	99.55
3mq2_A	218	16S rRNA methyltransferase; methyltranferase, ribo	99.55
1zx0_A	236	Guanidinoacetate N-methyltransferase; structural g	99.55
1nt2_A	210	Fibrillarin-like PRE-rRNA processing protein; adeM	99.54
3q87_B	170	N6 adenine specific DNA methylase; SAM-methyltrans	99.54
3evz_A	230	Methyltransferase; NYSGXRC, NEW YORK SGX research	99.54
3m33_A	226	Uncharacterized protein; structural genomics, PSI-	99.53
2yxd_A	183	Probable cobalt-precorrin-6Y C(15)-methyltransfer	99.53
3mb5_A	255	SAM-dependent methyltransferase; RNA methyltransfe	99.53
3bgv_A	313	MRNA CAP guanine-N7 methyltransferase; alternative	99.52
3mti_A	185	RRNA methylase; SAM-dependent, PSI, MCSG, structur	99.52
3fpf_A	298	Mtnas, putative uncharacterized protein; thermonic	99.52
2pwy_A	258	TRNA (adenine-N(1)-)-methyltransferase; mtase, ado	99.52
3giw_A	277	Protein of unknown function DUF574; rossmann-fold	99.5
1xdz_A	240	Methyltransferase GIDB; MCSG, protein structure in	99.5
4dzr_A	215	Protein-(glutamine-N5) methyltransferase, release	99.5
3p2e_A	225	16S rRNA methylase; methyltransferase, transferase	99.49
3p9n_A	189	Possible methyltransferase (methylase); RV2966C, a	99.49
1yzh_A	214	TRNA (guanine-N(7)-)-methyltransferase; alpha-beta	99.48
3opn_A	232	Putative hemolysin; structural genomics, PSI-2, pr	99.47
3bzb_A	281	Uncharacterized protein; RED ALGA, protein structu	99.47
1o54_A	277	SAM-dependent O-methyltransferase; TM0748, structu	99.47
2ipx_A	233	RRNA 2'-O-methyltransferase fibrillarin; FBL, stru	99.46
3lbf_A	210	Protein-L-isoaspartate O-methyltransferase; modifi	99.46
3eey_A	197	Putative rRNA methylase; rRNA methylation, S-adeno	99.45
3lpm_A	259	Putative methyltransferase; structural genomics, p	99.45
2fca_A	213	TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac	99.45
3hp7_A	291	Hemolysin, putative; structural genomics, APC64019	99.45
3id6_C	232	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	99.44
3bwc_A	304	Spermidine synthase; SAM, SGPP, structura genomics	99.44
1g8a_A	227	Fibrillarin-like PRE-rRNA processing protein; rRNA	99.44
1jsx_A	207	Glucose-inhibited division protein B; methyltransf	99.44
2pjd_A	343	Ribosomal RNA small subunit methyltransferase C; g	99.44
4dcm_A	375	Ribosomal RNA large subunit methyltransferase G; 2	99.43
3dxy_A	218	TRNA (guanine-N(7)-)-methyltransferase; rossmann f	99.41
3kr9_A	225	SAM-dependent methyltransferase; class I rossmann-	99.4
3g89_A	249	Ribosomal RNA small subunit methyltransferase G; 1	99.4
2b25_A	336	Hypothetical protein; structural genomics, methyl	99.4
3lec_A	230	NADB-rossmann superfamily protein; PSI, MCSG, stru	99.39
2yxe_A	215	Protein-L-isoaspartate O-methyltransferase; rossma	99.39
1vbf_A	231	231AA long hypothetical protein-L-isoaspartate O-	99.39
1ws6_A	171	Methyltransferase; structural genomics, riken stru	99.39
2frn_A	278	Hypothetical protein PH0793; structural genomics,	99.38
1i9g_A	280	Hypothetical protein RV2118C; mtase, adoMet, cryst	99.38
3q7e_A	349	Protein arginine N-methyltransferase 1; HET: SAH;	99.38
3dmg_A	381	Probable ribosomal RNA small subunit methyltransf;	99.37
2fhp_A	187	Methylase, putative; alpha-beta-alpha sandwich, st	99.36
2fyt_A	340	Protein arginine N-methyltransferase 3; structural	99.36
1dl5_A	317	Protein-L-isoaspartate O-methyltransferase; isoasp	99.35
2esr_A	177	Methyltransferase; structural genomics, hypothetic	99.35
1ej0_A	180	FTSJ; methyltransferase, adoMet, adenosyl methioni	99.35
3ckk_A	235	TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-	99.34
2fpo_A	202	Methylase YHHF; structural genomics, putative meth	99.34
1af7_A	274	Chemotaxis receptor methyltransferase CHER; chemot	99.34
1jg1_A	235	PIMT;, protein-L-isoaspartate O-methyltransferase;	99.34
2ift_A	201	Putative methylase HI0767; NESG, Y767_haein, struc	99.34
3u81_A	221	Catechol O-methyltransferase; neurotransmitter deg	99.33
3gnl_A	244	Uncharacterized protein, DUF633, LMOF2365_1472; st	99.32
3tfw_A	248	Putative O-methyltransferase; PSI-biology, nysgrc,	99.32
2ozv_A	260	Hypothetical protein ATU0636; structural genomics,	99.32
3uwp_A	438	Histone-lysine N-methyltransferase, H3 lysine-79;	99.32
1u2z_A	433	Histone-lysine N-methyltransferase, H3 lysine-79 s	99.32
3ntv_A	232	MW1564 protein; rossmann fold, putative methyltran	99.32
3r0q_C	376	Probable protein arginine N-methyltransferase 4.2;	99.31
2h00_A	254	Methyltransferase 10 domain containing protein; st	99.3
3duw_A	223	OMT, O-methyltransferase, putative; alternating of	99.29
1o9g_A	250	RRNA methyltransferase; antibiotic resistance, Se-	99.29
1ixk_A	315	Methyltransferase; open beta sheet; 1.90A {Pyrococ	99.28
3dr5_A	221	Putative O-methyltransferase; Q8NRD3, CGL1119, PF0	99.28
2gpy_A	233	O-methyltransferase; structural genomics, PSI, pro	99.28
2yvl_A	248	TRMI protein, hypothetical protein; tRNA, methyltr	99.28
1g6q_1	328	HnRNP arginine N-methyltransferase; SAM-binding do	99.28
4azs_A	569	Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15	99.28
3gdh_A	241	Trimethylguanosine synthase homolog; M7G, CAP, dim	99.27
3lcv_B	281	Sisomicin-gentamicin resistance methylase SGM; ant	99.26
2y1w_A	348	Histone-arginine methyltransferase CARM1; histone	99.26
1i1n_A	226	Protein-L-isoaspartate O-methyltransferase; S-aden	99.26
2vdv_E	246	TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl	99.25
2igt_A	332	SAM dependent methyltransferase; alpha-beta sandwi	99.23
3c3p_A	210	Methyltransferase; NP_951602.1, structural genomic	99.23
3adn_A	294	Spermidine synthase; aminopropyltransferase, polya	99.23
1r18_A	227	Protein-L-isoaspartate(D-aspartate)-O-methyltrans;	99.23
2pbf_A	227	Protein-L-isoaspartate O-methyltransferase beta-A	99.23
3gjy_A	317	Spermidine synthase; APC62791, structural genomics	99.23
3tr6_A	225	O-methyltransferase; cellular processes; HET: SAH;	99.23
3r3h_A	242	O-methyltransferase, SAM-dependent; structural gen	99.21
2plw_A	201	Ribosomal RNA methyltransferase, putative; malaria	99.21
1iy9_A	275	Spermidine synthase; rossmann fold, structural gen	99.2
1nv8_A	284	HEMK protein; class I adoMet-dependent methyltrans	99.2
1inl_A	296	Spermidine synthase; beta-barrel, rossman fold, st	99.2
1uir_A	314	Polyamine aminopropyltransferase; spermidien synth	99.19
3tm4_A	373	TRNA (guanine N2-)-methyltransferase TRM14; rossma	99.19
1sui_A	247	Caffeoyl-COA O-methyltransferase; rossmann fold, p	99.18
3tma_A	354	Methyltransferase; thump domain; 2.05A {Thermus th	99.17
2hnk_A	239	SAM-dependent O-methyltransferase; modified rossma	99.17
2pt6_A	321	Spermidine synthase; transferase, structural genom	99.16
3a27_A	272	TYW2, uncharacterized protein MJ1557; wybutosine m	99.15
2yxl_A	450	PH0851 protein, 450AA long hypothetical FMU protei	99.15
3cbg_A	232	O-methyltransferase; cyanobacterium; HET: SAH FER	99.15
2nyu_A	196	Putative ribosomal RNA methyltransferase 2; SAM, s	99.15
3b3j_A	480	Histone-arginine methyltransferase CARM1; protein	99.14
2f8l_A	344	Hypothetical protein LMO1582; structural genomics,	99.14
3frh_A	253	16S rRNA methylase; methyltransferase domain, heli	99.13
3ajd_A	274	Putative methyltransferase MJ0026; tRNA, M5C, ross	99.12
2i7c_A	283	Spermidine synthase; transferase, structural genom	99.11
4hc4_A	376	Protein arginine N-methyltransferase 6; HRMT1L6, S	99.11
2avd_A	229	Catechol-O-methyltransferase; structural genomics,	99.11
1mjf_A	281	Spermidine synthase; spermidine synthetase, struct	99.11
2bm8_A	236	Cephalosporin hydroxylase CMCI; cephamycin biosynt	99.1
1sqg_A	429	SUN protein, FMU protein; rossmann-fold, mixed bet	99.1
2b2c_A	314	Spermidine synthase; beta-alpha, transferase; 2.50	99.1
3c3y_A	237	Pfomt, O-methyltransferase; plant secondary metabo	99.09
3dou_A	191	Ribosomal RNA large subunit methyltransferase J; c	99.09
1ne2_A	200	Hypothetical protein TA1320; structural genomics,	99.09
2oxt_A	265	Nucleoside-2'-O-methyltransferase; flavivirus, vir	99.09
3k6r_A	278	Putative transferase PH0793; structural genomics,	99.09
2wa2_A	276	Non-structural protein 5; transferase, S-adenosyl-	99.09
2cmg_A	262	Spermidine synthase; transferase, putrescine amino	99.08
1wy7_A	207	Hypothetical protein PH1948; seven-stranded beta s	99.08
1zq9_A	285	Probable dimethyladenosine transferase; SGC, struc	99.07
1xj5_A	334	Spermidine synthase 1; structural genomics, protei	99.06
3sso_A	419	Methyltransferase; macrolide, natural product, ros	99.06
2qm3_A	373	Predicted methyltransferase; putative methyltransf	99.05
2o07_A	304	Spermidine synthase; structural genomics, structur	99.04
3m6w_A	464	RRNA methylase; rRNA methyltransferase, 5-methylcy	99.02
3b5i_A	374	S-adenosyl-L-methionine:salicylic acid carboxyl me	99.02
2ih2_A	421	Modification methylase TAQI; DNA, DNA methyltransf	98.98
4dmg_A	393	Putative uncharacterized protein TTHA1493; rRNA, m	98.97
3m4x_A	456	NOL1/NOP2/SUN family protein; mtase domain, PUA do	98.97
2frx_A	479	Hypothetical protein YEBU; rossmann-type S-adenosy	98.94
2p41_A	305	Type II methyltransferase; vizier, viral enzymes i	98.93
2b78_A	385	Hypothetical protein SMU.776; structure genomics,	98.91
1qam_A	244	ERMC' methyltransferase; rRNA methyltransferase ER	98.91
2as0_A	396	Hypothetical protein PH1915; RNA methyltransferase	98.88
3c0k_A	396	UPF0064 protein YCCW; PUA domain, adoMet dependent	98.87
2okc_A	445	Type I restriction enzyme stysji M protein; NP_813	98.86
1wxx_A	382	TT1595, hypothetical protein TTHA1280; thermus the	98.86
2xyq_A	290	Putative 2'-O-methyl transferase; transferase-vira	98.85
2efj_A	384	3,7-dimethylxanthine methyltransferase; SAM-depend	98.85
3v97_A	703	Ribosomal RNA large subunit methyltransferase L; Y	98.83
1uwv_A	433	23S rRNA (uracil-5-)-methyltransferase RUMA; RNA m	98.78
1m6e_X	359	S-adenosyl-L-methionnine:salicylic acid carboxyl m	98.77
1yub_A	245	Ermam, rRNA methyltransferase; MLS antibiotics; NM	98.77
2h1r_A	299	Dimethyladenosine transferase, putative; SGC toron	98.76
2yx1_A	336	Hypothetical protein MJ0883; methyl transferase, t	98.74
2jjq_A	425	Uncharacterized RNA methyltransferase pyrab10780;	98.68
3gru_A	295	Dimethyladenosine transferase; rossman fold, ribos	98.61
2qfm_A	364	Spermine synthase; spermidine aminopropyltransfera	98.61
3k0b_A	393	Predicted N6-adenine-specific DNA methylase; methy	98.59
3ldu_A	385	Putative methylase; structural genomics, PSI-2, pr	98.58
3ldg_A	384	Putative uncharacterized protein SMU.472; YPSC, me	98.56
2ar0_A	541	M.ecoki, type I restriction enzyme ecoki M protein	98.54
3bt7_A	369	TRNA (uracil-5-)-methyltransferase; methyluridine,	98.5
3khk_A	544	Type I restriction-modification system methylation	98.48
2b9e_A	309	NOL1/NOP2/SUN domain family, member 5 isoform 2; m	98.46
3fut_A	271	Dimethyladenosine transferase; methyltransferase,	98.42
2dul_A	378	N(2),N(2)-dimethylguanosine tRNA methyltransferas;	98.41
3o4f_A	294	Spermidine synthase; aminopropyltransferase, polya	98.36
3lkd_A	542	Type I restriction-modification system methyltrans	98.35
3tqs_A	255	Ribosomal RNA small subunit methyltransferase A; p	98.3
3axs_A	392	Probable N(2),N(2)-dimethylguanosine tRNA methylt	98.3
3evf_A	277	RNA-directed RNA polymerase NS5; NS5 methyltransfe	98.3
2qy6_A	257	UPF0209 protein YFCK; structural genomics, unknown	98.27
2r6z_A	258	UPF0341 protein in RSP 3' region; alpha-beta prote	98.26
3v97_A	703	Ribosomal RNA large subunit methyltransferase L; Y	98.25
3uzu_A	279	Ribosomal RNA small subunit methyltransferase A; s	98.22
1m6y_A	301	S-adenosyl-methyltransferase MRAW; SAM-dependent m	98.21
3s1s_A	878	Restriction endonuclease bpusi; PD--(D/E)XK cataly	98.18
3gcz_A	282	Polyprotein; flavivirus, RNA capping, methyltransf	98.1
3ftd_A	249	Dimethyladenosine transferase; KSGA, rossmann-like	98.04
4gqb_A	637	Protein arginine N-methyltransferase 5; TIM barrel	98.03
1qyr_A	252	KSGA, high level kasugamycin resistance protein, S	98.0
3cvo_A	202	Methyltransferase-like protein of unknown functio;	97.97
3ua3_A	745	Protein arginine N-methyltransferase 5; TIM-barrel	97.89
2vz8_A	2512	Fatty acid synthase; transferase, phosphopantethei	97.86
2oyr_A	258	UPF0341 protein YHIQ; alpha-beta protein, structur	97.86
2jny_A	67	Uncharacterized BCR; structure, CGR1, NESG, struct	97.82
2jr6_A	68	UPF0434 protein NMA0874; solution, structural geno	97.82
3eld_A	300	Methyltransferase; flavivirus, RNA capping, guanyl	97.79
2js4_A	70	UPF0434 protein BB2007; NESG, northeast structural	97.78
2pk7_A	69	Uncharacterized protein; NESG, PLR1, putative tetr	97.77
3ufb_A	530	Type I restriction-modification system methyltran	97.77
2hf1_A	68	Tetraacyldisaccharide-1-P 4-kinase; LPXK, lipid A	97.75
3c6k_A	381	Spermine synthase; spermidine aminopropyltransfera	97.73
2zig_A	297	TTHA0409, putative modification methylase; methylt	97.71
4fzv_A	359	Putative methyltransferase NSUN4; mterf fold, meth	97.62
4auk_A	375	Ribosomal RNA large subunit methyltransferase M; Y	97.59
2k4m_A	153	TR8_protein, UPF0146 protein MTH_1000; alpha+beta,	97.56
3ll7_A	410	Putative methyltransferase; methytransferase, stru	97.53
2wk1_A	282	NOVP; transferase, O-methyltransferase, novobiocin	97.5
2kpi_A	56	Uncharacterized protein SCO3027; zinc finger, PSI-	97.48
2px2_A	269	Genome polyprotein [contains: capsid protein C (co	97.44
1wg8_A	285	Predicted S-adenosylmethionine-dependent methyltra	97.44
3lkz_A	321	Non-structural protein 5; flavivirus, methyltransf	97.38
1g60_A	260	Adenine-specific methyltransferase MBOIIA; structu	97.13
2k5r_A	97	Uncharacterized protein XF2673; solution structure	97.06
1rjd_A	334	PPM1P, carboxy methyl transferase for protein phos	97.06
3p8z_A	267	Mtase, non-structural protein 5; methyltransferase	97.05
3vyw_A	308	MNMC2; tRNA wobble uridine, modification enzyme, g	96.93
2uyo_A	310	Hypothetical protein ML2640; putative methyltransf	96.32
3tka_A	347	Ribosomal RNA small subunit methyltransferase H; H	96.14
1i4w_A	353	Mitochondrial replication protein MTF1; mitochondr	96.03
1pft_A	50	TFIIB, PFTFIIBN; N-terminal domain, transcription	95.6
3r24_A	344	NSP16, 2'-O-methyl transferase; methyltransferase,	95.53
1kol_A	398	Formaldehyde dehydrogenase; oxidoreductase; HET: N	95.04
1eg2_A	319	Modification methylase RSRI; rossmann fold, exocyc	94.88
1f8f_A	371	Benzyl alcohol dehydrogenase; rossmann fold, oxido	94.85
1boo_A	323	Protein (N-4 cytosine-specific methyltransferase P	94.76
2py6_A	409	Methyltransferase FKBM; YP_546752.1, structural ge	94.56
3iei_A	334	Leucine carboxyl methyltransferase 1; LCMT-1, S-ad	94.49
4ej6_A	370	Putative zinc-binding dehydrogenase; structural ge	94.49
3qv2_A	327	5-cytosine DNA methyltransferase; DNMT2, ehmeth; H	93.86
1pqw_A	198	Polyketide synthase; rossmann fold, dimer, structu	93.8
1pl8_A	356	Human sorbitol dehydrogenase; NAD, oxidoreductase;	93.79
3s2e_A	340	Zinc-containing alcohol dehydrogenase superfamily;	93.37
1v3u_A	333	Leukotriene B4 12- hydroxydehydrogenase/prostaglan	93.34
1vq8_Z	83	50S ribosomal protein L37AE; ribosome 50S, protein	93.18
2dph_A	398	Formaldehyde dismutase; dismutation of aldehydes,	93.17
4b7c_A	336	Probable oxidoreductase; NADP cofactor, rossmann f	92.71
3fpc_A	352	NADP-dependent alcohol dehydrogenase; oxydoreducta	92.68
1dl6_A	58	Transcription factor II B (TFIIB); zinc ribbon, ge	92.52
3uog_A	363	Alcohol dehydrogenase; structural genomics, protei	92.49
3j20_Y	50	30S ribosomal protein S27AE; archaea, archaeal, KI	92.38
3two_A	348	Mannitol dehydrogenase; cinnamyl-alcohol dehydroge	92.25
2oo3_A	283	Protein involved in catabolism of external DNA; st	92.14
3m6i_A	363	L-arabinitol 4-dehydrogenase; medium chain dehydro	92.12
1uuf_A	369	YAHK, zinc-type alcohol dehydrogenase-like protein	92.1
3ps9_A	676	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	91.73
1cdo_A	374	Alcohol dehydrogenase; oxidoreductase, oxidoreduct	91.7
3gms_A	340	Putative NADPH:quinone reductase; structural genom	91.57
1e3j_A	352	NADP(H)-dependent ketose reductase; oxidoreductase	91.57
2j3h_A	345	NADP-dependent oxidoreductase P1; double bond redu	91.51
2fzw_A	373	Alcohol dehydrogenase class III CHI chain; S-nitro	91.39
1e3i_A	376	Alcohol dehydrogenase, class II; HET: NAD; 2.08A {	91.34
3ip1_A	404	Alcohol dehydrogenase, zinc-containing; structural	91.26
3jyn_A	325	Quinone oxidoreductase; rossmann fold, protein-NAD	91.09
1p0f_A	373	NADP-dependent alcohol dehydrogenase; ADH topology	91.07
2jhf_A	374	Alcohol dehydrogenase E chain; oxidoreductase, met	91.02
3jv7_A	345	ADH-A; dehydrogenase, nucleotide binding, rossmann	90.82
3tos_A	257	CALS11; methyltransferase, calicheamicin, structur	90.81
2eih_A	343	Alcohol dehydrogenase; zinc ION binding protein, s	90.81
3jyw_9	72	60S ribosomal protein L43; eukaryotic ribosome, RA	90.75
3pvc_A	689	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	90.52
4dvj_A	363	Putative zinc-dependent alcohol dehydrogenase Pro;	90.48
3qwb_A	334	Probable quinone oxidoreductase; rossmann fold, qu	90.37
2jne_A	101	Hypothetical protein YFGJ; zinc fingers, two zinc,	90.17
3uko_A	378	Alcohol dehydrogenase class-3; alcohol dehydrogena	89.86
1vj0_A	380	Alcohol dehydrogenase, zinc-containing; TM0436, st	89.47
1yb5_A	351	Quinone oxidoreductase; medium-chain dehydrogenase	89.31
1rjw_A	339	ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD	89.28
4eye_A	342	Probable oxidoreductase; structural genomics, niai	89.22
1qor_A	327	Quinone oxidoreductase; HET: NAP; 2.20A {Escherich	89.22
2hcy_A	347	Alcohol dehydrogenase 1; tetramer of asymmetric di	89.13
3fbg_A	346	Putative arginate lyase; structural genomics, unkn	89.04
2j8z_A	354	Quinone oxidoreductase; medium-chain dehydrogenase	88.9
3goh_A	315	Alcohol dehydrogenase, zinc-containing; NP_718042.	88.86
2k5c_A	95	Uncharacterized protein PF0385; structural genomic	88.83
2d8a_A	348	PH0655, probable L-threonine 3-dehydrogenase; pyro	88.78
2c0c_A	362	Zinc binding alcohol dehydrogenase, domain contain	88.35
2dq4_A	343	L-threonine 3-dehydrogenase; NAD-dependent, oxidor	88.22
2h6e_A	344	ADH-4, D-arabinose 1-dehydrogenase; rossman fold,	88.22
3j21_i	83	50S ribosomal protein L37AE; archaea, archaeal, KI	88.17
1qyp_A	57	RNA polymerase II; transcription, RPB9, Zn ribbon,	88.13
2cf5_A	357	Atccad5, CAD, cinnamyl alcohol dehydrogenase; lign	88.08
2jrp_A	81	Putative cytoplasmic protein; two-zinc binding pro	88.06
1jvb_A	347	NAD(H)-dependent alcohol dehydrogenase; archaeon,	88.03
2zb4_A	357	Prostaglandin reductase 2; rossmann fold, alternat	87.94
3iz5_m	92	60S ribosomal protein L43 (L37AE); eukaryotic ribo	87.67
1wly_A	333	CAAR, 2-haloacrylate reductase; NADPH-dependent ox	87.57
3cc2_Z	116	50S ribosomal protein L37AE, 50S ribosomal protein	87.44
4dup_A	353	Quinone oxidoreductase; PSI-biology, structural ge	87.34
2zig_A	297	TTHA0409, putative modification methylase; methylt	87.25
4eez_A	348	Alcohol dehydrogenase 1; site-saturation mutagenes	87.02
3izc_m	92	60S ribosomal protein RPL43 (L37AE); eukaryotic ri	86.96
4dcm_A	375	Ribosomal RNA large subunit methyltransferase G; 2	86.81
1zkd_A	387	DUF185; NESG, RPR58, structural genomics, PSI, pro	86.3
4a17_Y	103	RPL37A, 60S ribosomal protein L32; eukaryotic ribo	86.05
2c7p_A	327	Modification methylase HHAI; DNA methyltransferase	85.97
1piw_A	360	Hypothetical zinc-type alcohol dehydrogenase- like	85.85
1ffk_W	73	Ribosomal protein L37AE; ribosome assembly, RNA-RN	85.76
4a2c_A	346	Galactitol-1-phosphate 5-dehydrogenase; oxidoreduc	85.71
1yqd_A	366	Sinapyl alcohol dehydrogenase; lignin, monolignol,	85.37
2akl_A	138	PHNA-like protein PA0128; two domains, Zn binding	85.12
1tfi_A	50	Transcriptional elongation factor SII; transcripti	84.38
1g55_A	343	DNA cytosine methyltransferase DNMT2; human DNA me	83.77
2k4x_A	55	30S ribosomal protein S27AE; metal-binding, ribonu	83.5
1iz0_A	302	Quinone oxidoreductase; APO-enzyme, riken structur	83.42
3nx4_A	324	Putative oxidoreductase; csgid, structural genomic	83.22
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	83.18
1twf_L	70	ABC10-alpha, DNA-directed RNA polymerases I, II, a	82.65
3q87_A	125	Putative uncharacterized protein ECU08_1170; SAM-m	82.43
3j21_g	51	50S ribosomal protein L40E; archaea, archaeal, KIN	82.29
1wii_A	85	Hypothetical UPF0222 protein MGC4549; domain of un	82.05
4f3n_A	432	Uncharacterized ACR, COG1565 superfamily; structur	81.96
1boo_A	323	Protein (N-4 cytosine-specific methyltransferase P	81.72
3po3_S	178	Transcription elongation factor S-II; RNA polymera	80.96
4h0n_A	333	DNMT2; SAH binding, transferase; HET: SAH; 2.71A {	80.43
1gh9_A	71	8.3 kDa protein (gene MTH1184); beta+alpha complex	80.15
3ga8_A	78	HTH-type transcriptional regulator MQSA (YGIT/B30;	80.09

>4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A*

Probab=99.92  E-value=1.8e-24  Score=205.59  Aligned_cols=203  Identities=13%  Similarity=0.146  Sum_probs=143.3

Q ss_pred             cCCcccccccccccccccCcccccccCCCCCcCcccccchhhccCchhHHHHHHhHHHhhHhcCCCCcHHHHHHHHcccC
Q 019861           95 AGSSLQCNTCKKTYSGVGTHFDMTAASGSKDYGELMSPATEFFRMPFMSFIYERGWRQNFVWGGFPGPEKEFELMKGYLK  174 (334)
Q Consensus        95 ~~~~~~C~~C~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~l~~~l~  174 (334)
                      .....+|.+|+.++.......+.+..   .+|......              ...|....        ....+.+...+.
T Consensus        50 ~l~~~~C~~Cg~v~~~~~~~~~~~y~---~~y~~~~~~--------------~~~~~~~~--------~~~~~~l~~~~~  104 (416)
T 4e2x_A           50 RLAVGRCDSCEMVQLTEEVPRDLMFH---EVYPYHSSG--------------SSVMREHF--------AMLARDFLATEL  104 (416)
T ss_dssp             EEEEEEETTTCCEEESSCCCHHHHSS---TTCCCCGGG--------------CHHHHHHH--------HHHHHHHHHTTT
T ss_pred             cceEEECCCCCceeecCcCCHHHhcc---CCccCcCcC--------------CHHHHHHH--------HHHHHHHHHHhC
Confidence            45678999999998776554433321   122221100              01122111        223345666666


Q ss_pred             CCCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcC-C-----------CCCCCCceEEEeCcccc
Q 019861          175 PVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQE-S-----------NFPKDSIDAVHAGAAIH  242 (334)
Q Consensus       175 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~-~-----------~~~~~~fD~V~~~~vl~  242 (334)
                      ..++.+|||||||+|.++..+++.+.  +++|+|+|+.+++.|+++.... .           ++++++||+|++.++||
T Consensus       105 ~~~~~~VLDiGcG~G~~~~~l~~~g~--~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~fD~I~~~~vl~  182 (416)
T 4e2x_A          105 TGPDPFIVEIGCNDGIMLRTIQEAGV--RHLGFEPSSGVAAKAREKGIRVRTDFFEKATADDVRRTEGPANVIYAANTLC  182 (416)
T ss_dssp             CSSSCEEEEETCTTTTTHHHHHHTTC--EEEEECCCHHHHHHHHTTTCCEECSCCSHHHHHHHHHHHCCEEEEEEESCGG
T ss_pred             CCCCCEEEEecCCCCHHHHHHHHcCC--cEEEECCCHHHHHHHHHcCCCcceeeechhhHhhcccCCCCEEEEEECChHH
Confidence            66788999999999999999999876  9999999999999998761110 0           23468999999999999


Q ss_pred             CCCCHHHHHHHHHHcccCCcEEEEEEeccCCCCCchHHHHHHHHHhhhhcCccCCCCHHHHHHHHHhCCCcEEEEee---
Q 019861          243 CWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLCRACGLVDFKCTR---  319 (334)
Q Consensus       243 h~~d~~~~L~~i~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~l~~ll~~~Gf~~v~~~~---  319 (334)
                      |++|+..+|++++++|||||++++.+++...      .. ...........|..+++.+++.++++++||++++...   
T Consensus       183 h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~------~~-~~~~~~~~~~~~~~~~s~~~l~~ll~~aGf~~~~~~~~~~  255 (416)
T 4e2x_A          183 HIPYVQSVLEGVDALLAPDGVFVFEDPYLGD------IV-AKTSFDQIFDEHFFLFSATSVQGMAQRCGFELVDVQRLPV  255 (416)
T ss_dssp             GCTTHHHHHHHHHHHEEEEEEEEEEEECHHH------HH-HHTCGGGCSTTCCEECCHHHHHHHHHHTTEEEEEEEEECG
T ss_pred             hcCCHHHHHHHHHHHcCCCeEEEEEeCChHH------hh-hhcchhhhhhhhhhcCCHHHHHHHHHHcCCEEEEEEEccC
Confidence            9999999999999999999999999887421      11 1111111124588899999999999999999988654   


Q ss_pred             -cCcEEEEEEEcC
Q 019861          320 -NRGFVMFTATKP  331 (334)
Q Consensus       320 -~g~~~~~~a~K~  331 (334)
                       .|...++.+++.
T Consensus       256 ~~g~l~~~~~~~~  268 (416)
T 4e2x_A          256 HGGEVRYTLARQG  268 (416)
T ss_dssp             GGSEEEEEEEETT
T ss_pred             CCCEEEEEEEeCC
Confidence             456666666553

>4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A*

Probab=99.87  E-value=4.8e-21  Score=170.67  Aligned_cols=158  Identities=13%  Similarity=0.126  Sum_probs=119.2

Q ss_pred             CCCCcEEEECCCcCHHHHHHHHcC--CCCeEEEEeCCHHHHHHHHHHHhcCC-------------CCCCCCceEEEeCcc
Q 019861          176 VLGGNIIDASCGSGLFSRIFAKSG--LFSLVVALDYSENMLKQCYEFVQQES-------------NFPKDSIDAVHAGAA  240 (334)
Q Consensus       176 ~~~~~vLDiGcG~G~~~~~l~~~~--~~~~v~giD~s~~~~~~a~~~~~~~~-------------~~~~~~fD~V~~~~v  240 (334)
                      .++.+|||+|||+|.++..+++..  +..+|+|+|+|+.|++.|++++....             .++.+.||+|++..+
T Consensus        69 ~~~~~vLDlGcGtG~~~~~la~~~~~~~~~v~gvD~s~~ml~~A~~~~~~~~~~~~v~~~~~D~~~~~~~~~d~v~~~~~  148 (261)
T 4gek_A           69 QPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAIENASMVVLNFT  148 (261)
T ss_dssp             CTTCEEEEETCTTTHHHHHHHHTCCSSSCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCTTTCCCCSEEEEEEESC
T ss_pred             CCCCEEEEEeCCCCHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHHHHhhccCceEEEeecccccccccccccceeeee
Confidence            358899999999999999998873  34689999999999999999876432             345578999999999


Q ss_pred             ccCCCCH--HHHHHHHHHcccCCcEEEEEEeccCCCCCchHHHHHHHHHhhh---h------------cCccCCCCHHHH
Q 019861          241 IHCWSSP--STGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQ---I------------SGSYTFLSEREI  303 (334)
Q Consensus       241 l~h~~d~--~~~L~~i~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~---~------------~~~~~~~t~~~l  303 (334)
                      |+|++++  ..+|++++++|||||++++.+...................+..   +            ......++.+++
T Consensus       149 l~~~~~~~~~~~l~~i~~~LkpGG~lii~e~~~~~~~~~~~~~~~~~~~~~~~~g~s~~ei~~~~~~l~~~~~~~s~~~~  228 (261)
T 4gek_A          149 LQFLEPSERQALLDKIYQGLNPGGALVLSEKFSFEDAKVGELLFNMHHDFKRANGYSELEISQKRSMLENVMLTDSVETH  228 (261)
T ss_dssp             GGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEBCCSSHHHHHHHHHHHHHHHHHTTGGGSTTHHHHHHHHHHCCCBCHHHH
T ss_pred             eeecCchhHhHHHHHHHHHcCCCcEEEEEeccCCCCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhhcccccCCCHHHH
Confidence            9999865  4789999999999999999988764332222222111111110   0            112345789999


Q ss_pred             HHHHHhCCCcEEEEee-cCcEEEEEEEcCCC
Q 019861          304 EDLCRACGLVDFKCTR-NRGFVMFTATKPSQ  333 (334)
Q Consensus       304 ~~ll~~~Gf~~v~~~~-~g~~~~~~a~K~~~  333 (334)
                      .++|+++||+.++.+. ...|..++|.|+.+
T Consensus       229 ~~~L~~AGF~~ve~~fq~~nF~~~iA~K~~~  259 (261)
T 4gek_A          229 KARLHKAGFEHSELWFQCFNFGSLVALKAED  259 (261)
T ss_dssp             HHHHHHHTCSEEEEEEEETTEEEEEEECCTT
T ss_pred             HHHHHHcCCCeEEEEEEeccEEEEEEEEcCC
Confidence            9999999999998653 45678899999876

>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei}

Probab=99.86  E-value=1.9e-20  Score=163.66  Aligned_cols=169  Identities=15%  Similarity=0.224  Sum_probs=127.1

Q ss_pred             HHHHHHHcccC-CCCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCC------------CCCCC
Q 019861          164 KEFELMKGYLK-PVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES------------NFPKD  230 (334)
Q Consensus       164 ~~~~~l~~~l~-~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~------------~~~~~  230 (334)
                      ...+.+...+. ..++.+|||||||+|.++..+++..+..+++|+|+++.+++.++++.....            +++ +
T Consensus        30 ~~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~-~  108 (234)
T 3dtn_A           30 DFYGVSVSIASVDTENPDILDLGAGTGLLSAFLMEKYPEATFTLVDMSEKMLEIAKNRFRGNLKVKYIEADYSKYDFE-E  108 (234)
T ss_dssp             HHHHHHHHTCCCSCSSCEEEEETCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTCSCTTEEEEESCTTTCCCC-S
T ss_pred             HHHHHHHHHhhcCCCCCeEEEecCCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHHhhccCCCEEEEeCchhccCCC-C
Confidence            33455555554 456789999999999999999999767799999999999999998865321            233 7


Q ss_pred             CceEEEeCccccCCCCHH--HHHHHHHHcccCCcEEEEEEeccCCCCCchHHHHHHHHHhh--------------hhcCc
Q 019861          231 SIDAVHAGAAIHCWSSPS--TGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMM--------------QISGS  294 (334)
Q Consensus       231 ~fD~V~~~~vl~h~~d~~--~~L~~i~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~  294 (334)
                      +||+|++..+++|++++.  .+|++++++|+|||++++.++...............+....              ....+
T Consensus       109 ~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (234)
T 3dtn_A          109 KYDMVVSALSIHHLEDEDKKELYKRSYSILKESGIFINADLVHGETAFIENLNKTIWRQYVENSGLTEEEIAAGYERSKL  188 (234)
T ss_dssp             CEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEECBCSSHHHHHHHHHHHHHHHHTSSCCHHHHHTTC----C
T ss_pred             CceEEEEeCccccCCHHHHHHHHHHHHHhcCCCcEEEEEEecCCCChhhhhHHHHHHHHHHHhcCCCHHHHHHHHHhccc
Confidence            899999999999998776  59999999999999999999887543222222222221110              11245


Q ss_pred             cCCCCHHHHHHHHHhCCCcEEEEe-ecCcEEEEEEEcCCC
Q 019861          295 YTFLSEREIEDLCRACGLVDFKCT-RNRGFVMFTATKPSQ  333 (334)
Q Consensus       295 ~~~~t~~~l~~ll~~~Gf~~v~~~-~~g~~~~~~a~K~~~  333 (334)
                      ...++.+++.++|+++||++++.. ....+.++.+.|+++
T Consensus       189 ~~~~~~~~~~~ll~~aGF~~v~~~~~~~~~~~~~~~~~~~  228 (234)
T 3dtn_A          189 DKDIEMNQQLNWLKEAGFRDVSCIYKYYQFAVMFGRKTEG  228 (234)
T ss_dssp             CCCCBHHHHHHHHHHTTCEEEEEEEEETTEEEEEEECC--
T ss_pred             ccccCHHHHHHHHHHcCCCceeeeeeecceeEEEEEeccc
Confidence            677899999999999999999854 456788999998875

>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian}

Probab=99.86  E-value=5.5e-21  Score=165.44  Aligned_cols=160  Identities=18%  Similarity=0.148  Sum_probs=122.3

Q ss_pred             cccCCCCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcC----------CCCCCCCceEEEeCcc
Q 019861          171 GYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQE----------SNFPKDSIDAVHAGAA  240 (334)
Q Consensus       171 ~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~----------~~~~~~~fD~V~~~~v  240 (334)
                      +.+...++.+|||+|||+|.++..+++.+.  +++|+|+++.+++.++++....          .+++ ++||+|++..+
T Consensus        39 ~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~~~~d~~~~~~~-~~fD~v~~~~~  115 (220)
T 3hnr_A           39 EDVVNKSFGNVLEFGVGTGNLTNKLLLAGR--TVYGIEPSREMRMIAKEKLPKEFSITEGDFLSFEVP-TSIDTIVSTYA  115 (220)
T ss_dssp             HHHHHTCCSEEEEECCTTSHHHHHHHHTTC--EEEEECSCHHHHHHHHHHSCTTCCEESCCSSSCCCC-SCCSEEEEESC
T ss_pred             HHhhccCCCeEEEeCCCCCHHHHHHHhCCC--eEEEEeCCHHHHHHHHHhCCCceEEEeCChhhcCCC-CCeEEEEECcc
Confidence            333334678999999999999999999865  9999999999999999886511          1344 89999999999


Q ss_pred             ccCCCCHHH--HHHHHHHcccCCcEEEEEEeccCCCCCchHHHHHHHHHh----hhhcCccCCCCHHHHHHHHHhCCCcE
Q 019861          241 IHCWSSPST--GVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNM----MQISGSYTFLSEREIEDLCRACGLVD  314 (334)
Q Consensus       241 l~h~~d~~~--~L~~i~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~t~~~l~~ll~~~Gf~~  314 (334)
                      ++|++++..  +|+++.++|||||.+++.+++..................    ........+++.+++.++++++||++
T Consensus       116 l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~v  195 (220)
T 3hnr_A          116 FHHLTDDEKNVAIAKYSQLLNKGGKIVFADTIFADQDAYDKTVEAAKQRGFHQLANDLQTEYYTRIPVMQTIFENNGFHV  195 (220)
T ss_dssp             GGGSCHHHHHHHHHHHHHHSCTTCEEEEEEECBSSHHHHHHHHHHHHHTTCHHHHHHHHHSCCCBHHHHHHHHHHTTEEE
T ss_pred             hhcCChHHHHHHHHHHHHhcCCCCEEEEEeccccChHHHHHHHHHHHhCCCccchhhcchhhcCCHHHHHHHHHHCCCEE
Confidence            999999977  999999999999999999987653221111111111100    11111335679999999999999999


Q ss_pred             EEEeecCcEEEEEEEcCCC
Q 019861          315 FKCTRNRGFVMFTATKPSQ  333 (334)
Q Consensus       315 v~~~~~g~~~~~~a~K~~~  333 (334)
                      +.....+..+++.++|+..
T Consensus       196 ~~~~~~~~~w~~~~~~~~~  214 (220)
T 3hnr_A          196 TFTRLNHFVWVMEATKQLE  214 (220)
T ss_dssp             EEEECSSSEEEEEEEECSC
T ss_pred             EEeeccceEEEEeehhhhh
Confidence            9888888888888888753

>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis}

Probab=99.85  E-value=8.5e-21  Score=163.58  Aligned_cols=166  Identities=17%  Similarity=0.162  Sum_probs=122.6

Q ss_pred             HHHHHHHcccCCCCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcC---------------CCCC
Q 019861          164 KEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQE---------------SNFP  228 (334)
Q Consensus       164 ~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~---------------~~~~  228 (334)
                      ...+.+.+.+...++ +|||+|||+|.++..+++. +..+++|+|+++.+++.+++++...               .+++
T Consensus        31 ~~~~~~~~~~~~~~~-~vLdiG~G~G~~~~~l~~~-~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~  108 (219)
T 3dlc_A           31 IIAENIINRFGITAG-TCIDIGSGPGALSIALAKQ-SDFSIRALDFSKHMNEIALKNIADANLNDRIQIVQGDVHNIPIE  108 (219)
T ss_dssp             HHHHHHHHHHCCCEE-EEEEETCTTSHHHHHHHHH-SEEEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECBTTBCSSC
T ss_pred             HHHHHHHHhcCCCCC-EEEEECCCCCHHHHHHHHc-CCCeEEEEECCHHHHHHHHHHHHhccccCceEEEEcCHHHCCCC
Confidence            344566666665555 9999999999999999988 4459999999999999999885432               1456


Q ss_pred             CCCceEEEeCccccCCCCHHHHHHHHHHcccCCcEEEEEEeccCCCCCchHH-HHHHHHH----hhhhcCccCCCCHHHH
Q 019861          229 KDSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPF-SRLLRQN----MMQISGSYTFLSEREI  303 (334)
Q Consensus       229 ~~~fD~V~~~~vl~h~~d~~~~L~~i~r~LkpgG~lii~~~~~~~~~~~~~~-~~~~~~~----~~~~~~~~~~~t~~~l  303 (334)
                      +++||+|++..+++|++++..+|++++++|+|||.+++.++.....  .... .......    ......+...++.+++
T Consensus       109 ~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (219)
T 3dlc_A          109 DNYADLIVSRGSVFFWEDVATAFREIYRILKSGGKTYIGGGFGNKE--LRDSISAEMIRKNPDWKEFNRKNISQENVERF  186 (219)
T ss_dssp             TTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEECCSSHH--HHHHHHHHHHHHCTTHHHHHHHHSSHHHHHHH
T ss_pred             cccccEEEECchHhhccCHHHHHHHHHHhCCCCCEEEEEeccCcHH--HHHHHHHHHHHhHHHHHhhhhhccccCCHHHH
Confidence            7899999999999999999999999999999999999987654320  1110 0111110    0001124566789999


Q ss_pred             HHHHHhCCCcEEEEeecCcEEEEEEEcCCC
Q 019861          304 EDLCRACGLVDFKCTRNRGFVMFTATKPSQ  333 (334)
Q Consensus       304 ~~ll~~~Gf~~v~~~~~g~~~~~~a~K~~~  333 (334)
                      .++|+++||++++........++..+|+.+
T Consensus       187 ~~~l~~aGf~~v~~~~~~~~~~~~~~k~~~  216 (219)
T 3dlc_A          187 QNVLDEIGISSYEIILGDEGFWIIISKTDQ  216 (219)
T ss_dssp             HHHHHHHTCSSEEEEEETTEEEEEEBCCSC
T ss_pred             HHHHHHcCCCeEEEEecCCceEEEEecccc
Confidence            999999999999877655555556666543

>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus}

Probab=99.84  E-value=3.5e-20  Score=160.26  Aligned_cols=152  Identities=18%  Similarity=0.169  Sum_probs=122.9

Q ss_pred             HHHcccCCCCCCcEEEECCCcCHHHHHHHHcC-CCCeEEEEeCCHHHHHHHHHHHhcC--------------CCCCCCCc
Q 019861          168 LMKGYLKPVLGGNIIDASCGSGLFSRIFAKSG-LFSLVVALDYSENMLKQCYEFVQQE--------------SNFPKDSI  232 (334)
Q Consensus       168 ~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~~v~giD~s~~~~~~a~~~~~~~--------------~~~~~~~f  232 (334)
                      .+...+...++.+|||+|||+|.++..+++.+ +..+++|+|+++.+++.++++....              .++++++|
T Consensus        28 ~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~f  107 (219)
T 3dh0_A           28 KVLKEFGLKEGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLGLKNVEVLKSEENKIPLPDNTV  107 (219)
T ss_dssp             HHHHHHTCCTTCEEEESSCTTCTTHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHHTCTTEEEEECBTTBCSSCSSCE
T ss_pred             HHHHHhCCCCCCEEEEEecCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCcEEEEecccccCCCCCCCe
Confidence            34444556668899999999999999999885 5569999999999999999876321              14567899


Q ss_pred             eEEEeCccccCCCCHHHHHHHHHHcccCCcEEEEEEeccCCCCCchHHHHHHHHHhhhhcCccCCCCHHHHHHHHHhCCC
Q 019861          233 DAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLCRACGL  312 (334)
Q Consensus       233 D~V~~~~vl~h~~d~~~~L~~i~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~l~~ll~~~Gf  312 (334)
                      |+|++..+++|++++..+|+++.++|+|||++++.++.......              ...+...++.+++.++++++||
T Consensus       108 D~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~--------------~~~~~~~~~~~~~~~~l~~~Gf  173 (219)
T 3dh0_A          108 DFIFMAFTFHELSEPLKFLEELKRVAKPFAYLAIIDWKKEERDK--------------GPPPEEVYSEWEVGLILEDAGI  173 (219)
T ss_dssp             EEEEEESCGGGCSSHHHHHHHHHHHEEEEEEEEEEEECSSCCSS--------------SCCGGGSCCHHHHHHHHHHTTC
T ss_pred             eEEEeehhhhhcCCHHHHHHHHHHHhCCCeEEEEEEeccccccc--------------CCchhcccCHHHHHHHHHHCCC
Confidence            99999999999999999999999999999999999887653211              1224567899999999999999


Q ss_pred             cEEEEee-cCcEEEEEEEcCCC
Q 019861          313 VDFKCTR-NRGFVMFTATKPSQ  333 (334)
Q Consensus       313 ~~v~~~~-~g~~~~~~a~K~~~  333 (334)
                      ++++... .+.+..++++|+.+
T Consensus       174 ~~~~~~~~~~~~~~~~~~k~~~  195 (219)
T 3dh0_A          174 RVGRVVEVGKYCFGVYAMIVKQ  195 (219)
T ss_dssp             EEEEEEEETTTEEEEEEECC--
T ss_pred             EEEEEEeeCCceEEEEEEeccc
Confidence            9988554 55777888888643

>1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41

Probab=99.84  E-value=4.6e-20  Score=163.94  Aligned_cols=147  Identities=18%  Similarity=0.199  Sum_probs=117.0

Q ss_pred             HHHHcccCCCCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcC--------------CCCCCCCc
Q 019861          167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQE--------------SNFPKDSI  232 (334)
Q Consensus       167 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~--------------~~~~~~~f  232 (334)
                      +.+.+.+...++.+|||||||+|.++..+++.+.  +++|+|+|+.+++.++++....              .++++++|
T Consensus        27 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~--~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~l~~~~~~f  104 (260)
T 1vl5_A           27 AKLMQIAALKGNEEVLDVATGGGHVANAFAPFVK--KVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQMPFTDERF  104 (260)
T ss_dssp             HHHHHHHTCCSCCEEEEETCTTCHHHHHHGGGSS--EEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC-CCCSCTTCE
T ss_pred             HHHHHHhCCCCCCEEEEEeCCCCHHHHHHHHhCC--EEEEEeCCHHHHHHHHHHHHhcCCCceEEEEecHHhCCCCCCCE
Confidence            3455556666788999999999999999999886  9999999999999999875321              25677899


Q ss_pred             eEEEeCccccCCCCHHHHHHHHHHcccCCcEEEEEEeccCCCCCchHHHHHHHHHh--hhhcCccCCCCHHHHHHHHHhC
Q 019861          233 DAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNM--MQISGSYTFLSEREIEDLCRAC  310 (334)
Q Consensus       233 D~V~~~~vl~h~~d~~~~L~~i~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~t~~~l~~ll~~~  310 (334)
                      |+|++..+++|++|+..+|++++++|+|||++++.++.....    +....+....  .....+..+++.+++.++|+++
T Consensus       105 D~V~~~~~l~~~~d~~~~l~~~~r~LkpgG~l~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a  180 (260)
T 1vl5_A          105 HIVTCRIAAHHFPNPASFVSEAYRVLKKGGQLLLVDNSAPEN----DAFDVFYNYVEKERDYSHHRAWKKSDWLKMLEEA  180 (260)
T ss_dssp             EEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEEEBCSS----HHHHHHHHHHHHHHCTTCCCCCBHHHHHHHHHHH
T ss_pred             EEEEEhhhhHhcCCHHHHHHHHHHHcCCCCEEEEEEcCCCCC----HHHHHHHHHHHHhcCccccCCCCHHHHHHHHHHC
Confidence            999999999999999999999999999999999988765432    2222221111  1123467789999999999999


Q ss_pred             CCcEEEEee
Q 019861          311 GLVDFKCTR  319 (334)
Q Consensus       311 Gf~~v~~~~  319 (334)
                      ||+++....
T Consensus       181 Gf~~~~~~~  189 (260)
T 1vl5_A          181 GFELEELHC  189 (260)
T ss_dssp             TCEEEEEEE
T ss_pred             CCeEEEEEE
Confidence            999877543

>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes}

Probab=99.83  E-value=3e-19  Score=159.63  Aligned_cols=151  Identities=22%  Similarity=0.258  Sum_probs=118.1

Q ss_pred             HHHHHcccCCCCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcC---------------CCCCCC
Q 019861          166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQE---------------SNFPKD  230 (334)
Q Consensus       166 ~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~---------------~~~~~~  230 (334)
                      .+.+.+.+...++.+|||||||+|.++..+++.. ..+++|+|+|+.+++.++++....               .+++++
T Consensus        50 ~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~  128 (273)
T 3bus_A           50 TDEMIALLDVRSGDRVLDVGCGIGKPAVRLATAR-DVRVTGISISRPQVNQANARATAAGLANRVTFSYADAMDLPFEDA  128 (273)
T ss_dssp             HHHHHHHSCCCTTCEEEEESCTTSHHHHHHHHHS-CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCSCTT
T ss_pred             HHHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHhc-CCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECccccCCCCCC
Confidence            3455666666778999999999999999998864 459999999999999999875421               145678


Q ss_pred             CceEEEeCccccCCCCHHHHHHHHHHcccCCcEEEEEEeccCCCCCchHHHHHHHHHhhhhcCccCCCCHHHHHHHHHhC
Q 019861          231 SIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLCRAC  310 (334)
Q Consensus       231 ~fD~V~~~~vl~h~~d~~~~L~~i~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~l~~ll~~~  310 (334)
                      +||+|++..+++|++++..+|+++.++|+|||++++.++.......  .........+.....+..+++.+++.++++++
T Consensus       129 ~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a  206 (273)
T 3bus_A          129 SFDAVWALESLHHMPDRGRALREMARVLRPGGTVAIADFVLLAPVE--GAKKEAVDAFRAGGGVLSLGGIDEYESDVRQA  206 (273)
T ss_dssp             CEEEEEEESCTTTSSCHHHHHHHHHTTEEEEEEEEEEEEEESSCCC--HHHHHHHHHHHHHHTCCCCCCHHHHHHHHHHT
T ss_pred             CccEEEEechhhhCCCHHHHHHHHHHHcCCCeEEEEEEeeccCCCC--hhHHHHHHHHHhhcCccCCCCHHHHHHHHHHc
Confidence            9999999999999999999999999999999999999987653211  11111111111223366789999999999999


Q ss_pred             CCcEEEEee
Q 019861          311 GLVDFKCTR  319 (334)
Q Consensus       311 Gf~~v~~~~  319 (334)
                      ||++++...
T Consensus       207 Gf~~~~~~~  215 (273)
T 3bus_A          207 ELVVTSTVD  215 (273)
T ss_dssp             TCEEEEEEE
T ss_pred             CCeEEEEEE
Confidence            999987654

>1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A*

Probab=99.82  E-value=2e-19  Score=157.97  Aligned_cols=146  Identities=21%  Similarity=0.255  Sum_probs=117.1

Q ss_pred             HHHcccCCCCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcC--------------CCCCCCCce
Q 019861          168 LMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQE--------------SNFPKDSID  233 (334)
Q Consensus       168 ~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~--------------~~~~~~~fD  233 (334)
                      .+...+...++.+|||||||+|.++..+++.+.  +++|+|+++.+++.++++....              .++++++||
T Consensus        12 ~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD   89 (239)
T 1xxl_A           12 LMIKTAECRAEHRVLDIGAGAGHTALAFSPYVQ--ECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAESLPFPDDSFD   89 (239)
T ss_dssp             HHHHHHTCCTTCEEEEESCTTSHHHHHHGGGSS--EEEEEESCHHHHHHHHHHHHHHTCCSEEEEECBTTBCCSCTTCEE
T ss_pred             hHHHHhCcCCCCEEEEEccCcCHHHHHHHHhCC--EEEEEECCHHHHHHHHHHHHHcCCCCeEEEecccccCCCCCCcEE
Confidence            445556667789999999999999999999886  9999999999999999875321              246678999


Q ss_pred             EEEeCccccCCCCHHHHHHHHHHcccCCcEEEEEEeccCCCCCchHHHHHHHHHh--hhhcCccCCCCHHHHHHHHHhCC
Q 019861          234 AVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNM--MQISGSYTFLSEREIEDLCRACG  311 (334)
Q Consensus       234 ~V~~~~vl~h~~d~~~~L~~i~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~t~~~l~~ll~~~G  311 (334)
                      +|++..+++|++++..+|++++++|+|||++++.++.....    +....+....  .....|.+.++.+++.++++++|
T Consensus        90 ~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aG  165 (239)
T 1xxl_A           90 IITCRYAAHHFSDVRKAVREVARVLKQDGRFLLVDHYAPED----PVLDEFVNHLNRLRDPSHVRESSLSEWQAMFSANQ  165 (239)
T ss_dssp             EEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEECBCSS----HHHHHHHHHHHHHHCTTCCCCCBHHHHHHHHHHTT
T ss_pred             EEEECCchhhccCHHHHHHHHHHHcCCCcEEEEEEcCCCCC----hhHHHHHHHHHHhccccccCCCCHHHHHHHHHHCC
Confidence            99999999999999999999999999999999988876432    2222222111  11245678899999999999999


Q ss_pred             CcEEEEee
Q 019861          312 LVDFKCTR  319 (334)
Q Consensus       312 f~~v~~~~  319 (334)
                      |++++...
T Consensus       166 f~~~~~~~  173 (239)
T 1xxl_A          166 LAYQDIQK  173 (239)
T ss_dssp             EEEEEEEE
T ss_pred             CcEEEEEe
Confidence            99877544

>2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A

Probab=99.82  E-value=3.7e-20  Score=162.66  Aligned_cols=137  Identities=12%  Similarity=0.050  Sum_probs=109.3

Q ss_pred             CCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcC---------CCCCCCCceEEEeCccccCCCCH
Q 019861          177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQE---------SNFPKDSIDAVHAGAAIHCWSSP  247 (334)
Q Consensus       177 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~---------~~~~~~~fD~V~~~~vl~h~~d~  247 (334)
                      ++.+|||||||+|.++..+++.++  +++|+|+|+.+++.++++....         ..+++++||+|++.++|||++|+
T Consensus        42 ~~~~vLDiGcG~G~~~~~l~~~~~--~v~gvD~s~~~~~~a~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~~l~~~~~~  119 (250)
T 2p7i_A           42 RPGNLLELGSFKGDFTSRLQEHFN--DITCVEASEEAISHAQGRLKDGITYIHSRFEDAQLPRRYDNIVLTHVLEHIDDP  119 (250)
T ss_dssp             CSSCEEEESCTTSHHHHHHTTTCS--CEEEEESCHHHHHHHHHHSCSCEEEEESCGGGCCCSSCEEEEEEESCGGGCSSH
T ss_pred             CCCcEEEECCCCCHHHHHHHHhCC--cEEEEeCCHHHHHHHHHhhhCCeEEEEccHHHcCcCCcccEEEEhhHHHhhcCH
Confidence            467999999999999999999887  8999999999999999876421         12467899999999999999999


Q ss_pred             HHHHHHHH-HcccCCcEEEEEEeccCCCCCchHHHHHHHH---------HhhhhcCccCCCCHHHHHHHHHhCCCcEEEE
Q 019861          248 STGVAEIS-RVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQ---------NMMQISGSYTFLSEREIEDLCRACGLVDFKC  317 (334)
Q Consensus       248 ~~~L~~i~-r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~t~~~l~~ll~~~Gf~~v~~  317 (334)
                      ..+|++++ ++|||||++++.+++....   .........         .......|.++++.+++.++++++||++++.
T Consensus       120 ~~~l~~~~~~~LkpgG~l~i~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~  196 (250)
T 2p7i_A          120 VALLKRINDDWLAEGGRLFLVCPNANAV---SRQIAVKMGIISHNSAVTEAEFAHGHRCTYALDTLERDASRAGLQVTYR  196 (250)
T ss_dssp             HHHHHHHHHTTEEEEEEEEEEEECTTCH---HHHHHHHTTSSSSTTCCCHHHHHTTCCCCCCHHHHHHHHHHTTCEEEEE
T ss_pred             HHHHHHHHHHhcCCCCEEEEEcCChHHH---HHHHHHHcCccccchhcccccccccccccCCHHHHHHHHHHCCCeEEEE
Confidence            99999999 9999999999999986431   110000000         0011234678899999999999999998875


Q ss_pred             e
Q 019861          318 T  318 (334)
Q Consensus       318 ~  318 (334)
                      .
T Consensus       197 ~  197 (250)
T 2p7i_A          197 S  197 (250)
T ss_dssp             E
T ss_pred             e
Confidence            4

>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris}

Probab=99.82  E-value=5.2e-19  Score=152.11  Aligned_cols=152  Identities=22%  Similarity=0.307  Sum_probs=118.6

Q ss_pred             HHHHHHcccCCCCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcC--------CCCCCCCceEEE
Q 019861          165 EFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQE--------SNFPKDSIDAVH  236 (334)
Q Consensus       165 ~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~--------~~~~~~~fD~V~  236 (334)
                      ....+...+.  ++.+|||||||+|.++..+++.+.  +++|+|+++.+++.++++....        .+ ++++||+|+
T Consensus        33 ~~~~~~~~~~--~~~~vLDiGcG~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~~d~~~~~-~~~~fD~v~  107 (211)
T 3e23_A           33 TLTKFLGELP--AGAKILELGCGAGYQAEAMLAAGF--DVDATDGSPELAAEASRRLGRPVRTMLFHQLD-AIDAYDAVW  107 (211)
T ss_dssp             HHHHHHTTSC--TTCEEEESSCTTSHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHTSCCEECCGGGCC-CCSCEEEEE
T ss_pred             HHHHHHHhcC--CCCcEEEECCCCCHHHHHHHHcCC--eEEEECCCHHHHHHHHHhcCCceEEeeeccCC-CCCcEEEEE
Confidence            3344444444  478999999999999999999865  9999999999999999875321        12 578999999


Q ss_pred             eCccccCCC--CHHHHHHHHHHcccCCcEEEEEEeccCCCCCchHHHHHHHHHhhhhcCccCCCCHHHHHHHHHhCC-Cc
Q 019861          237 AGAAIHCWS--SPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLCRACG-LV  313 (334)
Q Consensus       237 ~~~vl~h~~--d~~~~L~~i~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~l~~ll~~~G-f~  313 (334)
                      +..+++|++  ++..+|++++++|+|||++++..+.......            .....+..+++.+++.++++++| |+
T Consensus       108 ~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~l~~aG~f~  175 (211)
T 3e23_A          108 AHACLLHVPRDELADVLKLIWRALKPGGLFYASYKSGEGEGR------------DKLARYYNYPSEEWLRARYAEAGTWA  175 (211)
T ss_dssp             ECSCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEECCSSCEE------------CTTSCEECCCCHHHHHHHHHHHCCCS
T ss_pred             ecCchhhcCHHHHHHHHHHHHHhcCCCcEEEEEEcCCCcccc------------cccchhccCCCHHHHHHHHHhCCCcE
Confidence            999999999  7789999999999999999999876543211            11123567889999999999999 99


Q ss_pred             EEEEeec---------CcEEEEEEEcCCC
Q 019861          314 DFKCTRN---------RGFVMFTATKPSQ  333 (334)
Q Consensus       314 ~v~~~~~---------g~~~~~~a~K~~~  333 (334)
                      +++....         ..|+.++.+|++.
T Consensus       176 ~~~~~~~~~~~~~~~~~~wl~~~~~~~~~  204 (211)
T 3e23_A          176 SVAVESSEGKGFDQELAQFLHVSVRKPEL  204 (211)
T ss_dssp             EEEEEEEEEECTTSCEEEEEEEEEECCCC
T ss_pred             EEEEEeccCCCCCCCCceEEEEEEecCcc
Confidence            9885422         1266777777654

>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18

Probab=99.81  E-value=6.3e-19  Score=159.65  Aligned_cols=149  Identities=18%  Similarity=0.153  Sum_probs=115.5

Q ss_pred             HHHHHHccc----CCCCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcC---------------C
Q 019861          165 EFELMKGYL----KPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQE---------------S  225 (334)
Q Consensus       165 ~~~~l~~~l----~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~---------------~  225 (334)
                      ..+.+...+    ...++.+|||||||+|.++..+++.. ..+++|+|+++.+++.++++....               .
T Consensus        66 ~~~~l~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~  144 (297)
T 2o57_A           66 TDEWLASELAMTGVLQRQAKGLDLGAGYGGAARFLVRKF-GVSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEI  144 (297)
T ss_dssp             HHHHHHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTSC
T ss_pred             HHHHHHHHhhhccCCCCCCEEEEeCCCCCHHHHHHHHHh-CCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEEcCcccC
Confidence            344555566    55678899999999999999999873 239999999999999999875321               2


Q ss_pred             CCCCCCceEEEeCccccCCCCHHHHHHHHHHcccCCcEEEEEEeccCCCCCchHHHHHHHHHhhhhcCccCCCCHHHHHH
Q 019861          226 NFPKDSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIED  305 (334)
Q Consensus       226 ~~~~~~fD~V~~~~vl~h~~d~~~~L~~i~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~l~~  305 (334)
                      ++++++||+|++..+++|++++..+|++++++|||||++++.++..........+ ..+...+    ....+.+.+++.+
T Consensus       145 ~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~-~~~~~~~----~~~~~~~~~~~~~  219 (297)
T 2o57_A          145 PCEDNSYDFIWSQDAFLHSPDKLKVFQECARVLKPRGVMAITDPMKEDGIDKSSI-QPILDRI----KLHDMGSLGLYRS  219 (297)
T ss_dssp             SSCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEEEECTTCCGGGG-HHHHHHH----TCSSCCCHHHHHH
T ss_pred             CCCCCCEeEEEecchhhhcCCHHHHHHHHHHHcCCCeEEEEEEeccCCCCchHHH-HHHHHHh----cCCCCCCHHHHHH
Confidence            4667899999999999999999999999999999999999999886543222211 1111111    1334679999999


Q ss_pred             HHHhCCCcEEEEee
Q 019861          306 LCRACGLVDFKCTR  319 (334)
Q Consensus       306 ll~~~Gf~~v~~~~  319 (334)
                      +++++||++++...
T Consensus       220 ~l~~aGf~~~~~~~  233 (297)
T 2o57_A          220 LAKECGLVTLRTFS  233 (297)
T ss_dssp             HHHHTTEEEEEEEE
T ss_pred             HHHHCCCeEEEEEE
Confidence            99999999887643

>3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus}

Probab=99.81  E-value=3.9e-19  Score=156.12  Aligned_cols=147  Identities=14%  Similarity=0.135  Sum_probs=115.6

Q ss_pred             HHHHHHcccC-CCCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcC--------CCCCCCCceEE
Q 019861          165 EFELMKGYLK-PVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQE--------SNFPKDSIDAV  235 (334)
Q Consensus       165 ~~~~l~~~l~-~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~--------~~~~~~~fD~V  235 (334)
                      ..+.+..++. ..++.+|||||||+|.++..+++.+.  +++|+|+|+.+++.+++++.-.        .++++++||+|
T Consensus        28 ~~~~~~~~l~~~~~~~~vLDiGcG~G~~~~~l~~~~~--~v~gvD~s~~~~~~a~~~~~~~~~d~~~~~~~~~~~~fD~i  105 (240)
T 3dli_A           28 VKARLRRYIPYFKGCRRVLDIGCGRGEFLELCKEEGI--ESIGVDINEDMIKFCEGKFNVVKSDAIEYLKSLPDKYLDGV  105 (240)
T ss_dssp             HHHHHGGGGGGTTTCSCEEEETCTTTHHHHHHHHHTC--CEEEECSCHHHHHHHHTTSEEECSCHHHHHHTSCTTCBSEE
T ss_pred             HHHHHHHHHhhhcCCCeEEEEeCCCCHHHHHHHhCCC--cEEEEECCHHHHHHHHhhcceeeccHHHHhhhcCCCCeeEE
Confidence            3444544443 23468999999999999999999876  8999999999999998752210        15778999999


Q ss_pred             EeCccccCCCCH--HHHHHHHHHcccCCcEEEEEEeccCCCCCchHHHHHHHHHhhhhcCccCCCCHHHHHHHHHhCCCc
Q 019861          236 HAGAAIHCWSSP--STGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLCRACGLV  313 (334)
Q Consensus       236 ~~~~vl~h~~d~--~~~L~~i~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~l~~ll~~~Gf~  313 (334)
                      ++..+++|++++  ..+|+++.++|||||++++.+++....   ..    ....+ ....|..+++.+++.++++++||+
T Consensus       106 ~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~---~~----~~~~~-~~~~~~~~~~~~~l~~~l~~aGf~  177 (240)
T 3dli_A          106 MISHFVEHLDPERLFELLSLCYSKMKYSSYIVIESPNPTSL---YS----LINFY-IDPTHKKPVHPETLKFILEYLGFR  177 (240)
T ss_dssp             EEESCGGGSCGGGHHHHHHHHHHHBCTTCCEEEEEECTTSH---HH----HHHHT-TSTTCCSCCCHHHHHHHHHHHTCE
T ss_pred             EECCchhhCCcHHHHHHHHHHHHHcCCCcEEEEEeCCcchh---HH----HHHHh-cCccccccCCHHHHHHHHHHCCCe
Confidence            999999999966  899999999999999999999985421   11    11112 234577889999999999999999


Q ss_pred             EEEEeecC
Q 019861          314 DFKCTRNR  321 (334)
Q Consensus       314 ~v~~~~~g  321 (334)
                      +++....+
T Consensus       178 ~~~~~~~~  185 (240)
T 3dli_A          178 DVKIEFFE  185 (240)
T ss_dssp             EEEEEEEC
T ss_pred             EEEEEEec
Confidence            98866544

>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis}

Probab=99.81  E-value=3.3e-19  Score=156.39  Aligned_cols=145  Identities=19%  Similarity=0.255  Sum_probs=115.0

Q ss_pred             HHHHHHcccCCCCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcC-----------CCCCCCCce
Q 019861          165 EFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQE-----------SNFPKDSID  233 (334)
Q Consensus       165 ~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~-----------~~~~~~~fD  233 (334)
                      ..+.+...+.  ++.+|||||||+|.++..+++.+.  +++|+|+++.+++.++++....           .++++++||
T Consensus        43 ~~~~l~~~~~--~~~~vLDiG~G~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD  118 (242)
T 3l8d_A           43 IIPFFEQYVK--KEAEVLDVGCGDGYGTYKLSRTGY--KAVGVDISEVMIQKGKERGEGPDLSFIKGDLSSLPFENEQFE  118 (242)
T ss_dssp             HHHHHHHHSC--TTCEEEEETCTTSHHHHHHHHTTC--EEEEEESCHHHHHHHHTTTCBTTEEEEECBTTBCSSCTTCEE
T ss_pred             HHHHHHHHcC--CCCeEEEEcCCCCHHHHHHHHcCC--eEEEEECCHHHHHHHHhhcccCCceEEEcchhcCCCCCCCcc
Confidence            3455555555  478999999999999999999865  9999999999999999863221           246688999


Q ss_pred             EEEeCccccCCCCHHHHHHHHHHcccCCcEEEEEEeccCCCCCchHHHHHHHHHhhhhcCccCCCCHHHHHHHHHhCCCc
Q 019861          234 AVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLCRACGLV  313 (334)
Q Consensus       234 ~V~~~~vl~h~~d~~~~L~~i~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~l~~ll~~~Gf~  313 (334)
                      +|++.++++|++++..+|+++.++|+|||++++.++..........+     ........+.+.++.+++.++++++||+
T Consensus       119 ~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~l~~~Gf~  193 (242)
T 3l8d_A          119 AIMAINSLEWTEEPLRALNEIKRVLKSDGYACIAILGPTAKPRENSY-----PRLYGKDVVCNTMMPWEFEQLVKEQGFK  193 (242)
T ss_dssp             EEEEESCTTSSSCHHHHHHHHHHHEEEEEEEEEEEECTTCGGGGGGG-----GGGGTCCCSSCCCCHHHHHHHHHHTTEE
T ss_pred             EEEEcChHhhccCHHHHHHHHHHHhCCCeEEEEEEcCCcchhhhhhh-----hhhccccccccCCCHHHHHHHHHHcCCE
Confidence            99999999999999999999999999999999999876432111111     1112223466789999999999999999


Q ss_pred             EEEEe
Q 019861          314 DFKCT  318 (334)
Q Consensus       314 ~v~~~  318 (334)
                      +++..
T Consensus       194 ~~~~~  198 (242)
T 3l8d_A          194 VVDGI  198 (242)
T ss_dssp             EEEEE
T ss_pred             EEEee
Confidence            98854

>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A*

Probab=99.81  E-value=4.8e-19  Score=157.32  Aligned_cols=152  Identities=16%  Similarity=0.197  Sum_probs=120.9

Q ss_pred             cHHHHHHHHcccCCCCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcC------------CCCCC
Q 019861          162 PEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQE------------SNFPK  229 (334)
Q Consensus       162 ~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~------------~~~~~  229 (334)
                      .....+.+.+.+...++.+|||||||+|.++..+++.. ..+|+|+|+|+.+++.++++....            .++++
T Consensus        40 ~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~  118 (266)
T 3ujc_A           40 GLEATKKILSDIELNENSKVLDIGSGLGGGCMYINEKY-GAHTHGIDICSNIVNMANERVSGNNKIIFEANDILTKEFPE  118 (266)
T ss_dssp             HHHHHHHHTTTCCCCTTCEEEEETCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHTCCSCTTEEEEECCTTTCCCCT
T ss_pred             hHHHHHHHHHhcCCCCCCEEEEECCCCCHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHhhcCCCeEEEECccccCCCCC
Confidence            34556677777777788899999999999999999974 349999999999999999875431            24668


Q ss_pred             CCceEEEeCccccCC--CCHHHHHHHHHHcccCCcEEEEEEeccCCCCCchHHHHHHHHHhhhhcCccCCCCHHHHHHHH
Q 019861          230 DSIDAVHAGAAIHCW--SSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLC  307 (334)
Q Consensus       230 ~~fD~V~~~~vl~h~--~d~~~~L~~i~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~l~~ll  307 (334)
                      ++||+|++..+++|+  .++..+|+++.++|+|||++++.++.............   ....  ..+..+++.+++.+++
T Consensus       119 ~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~---~~~~--~~~~~~~~~~~~~~~l  193 (266)
T 3ujc_A          119 NNFDLIYSRDAILALSLENKNKLFQKCYKWLKPTGTLLITDYCATEKENWDDEFK---EYVK--QRKYTLITVEEYADIL  193 (266)
T ss_dssp             TCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEESCGGGCCHHHH---HHHH--HHTCCCCCHHHHHHHH
T ss_pred             CcEEEEeHHHHHHhcChHHHHHHHHHHHHHcCCCCEEEEEEeccCCcccchHHHH---HHHh--cCCCCCCCHHHHHHHH
Confidence            899999999999999  78899999999999999999999987654222222221   1111  1256788999999999


Q ss_pred             HhCCCcEEEEee
Q 019861          308 RACGLVDFKCTR  319 (334)
Q Consensus       308 ~~~Gf~~v~~~~  319 (334)
                      +++||++++...
T Consensus       194 ~~~Gf~~~~~~~  205 (266)
T 3ujc_A          194 TACNFKNVVSKD  205 (266)
T ss_dssp             HHTTCEEEEEEE
T ss_pred             HHcCCeEEEEEe
Confidence            999999888654

>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21

Probab=99.81  E-value=4.4e-19  Score=156.97  Aligned_cols=150  Identities=15%  Similarity=0.116  Sum_probs=118.0

Q ss_pred             cHHHHHHHHcccCCCCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCC---------------C
Q 019861          162 PEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES---------------N  226 (334)
Q Consensus       162 ~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~---------------~  226 (334)
                      .....+.+...+...++.+|||||||+|.++..+++.. ..+++|+|+++.+++.++++.....               +
T Consensus        21 ~~~~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~la~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~   99 (256)
T 1nkv_A           21 TEEKYATLGRVLRMKPGTRILDLGSGSGEMLCTWARDH-GITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGYV   99 (256)
T ss_dssp             CHHHHHHHHHHTCCCTTCEEEEETCTTCHHHHHHHHHT-CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTTCC
T ss_pred             CHHHHHHHHHhcCCCCCCEEEEECCCCCHHHHHHHHhc-CCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECChHhCC
Confidence            34455666777777778999999999999999999874 3499999999999999998764321               2


Q ss_pred             CCCCCceEEEeCccccCCCCHHHHHHHHHHcccCCcEEEEEEeccCCCCCchHHHHHHHHHhhhhcCccCCCCHHHHHHH
Q 019861          227 FPKDSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDL  306 (334)
Q Consensus       227 ~~~~~fD~V~~~~vl~h~~d~~~~L~~i~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~l~~l  306 (334)
                      + +++||+|++..+++|++++..+|++++++|||||++++.++..........+    ...+. ...+..+++.+++.++
T Consensus       100 ~-~~~fD~V~~~~~~~~~~~~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~----~~~~~-~~~~~~~~~~~~~~~~  173 (256)
T 1nkv_A          100 A-NEKCDVAACVGATWIAGGFAGAEELLAQSLKPGGIMLIGEPYWRQLPATEEI----AQACG-VSSTSDFLTLPGLVGA  173 (256)
T ss_dssp             C-SSCEEEEEEESCGGGTSSSHHHHHHHTTSEEEEEEEEEEEEEETTCCSSHHH----HHTTT-CSCGGGSCCHHHHHHH
T ss_pred             c-CCCCCEEEECCChHhcCCHHHHHHHHHHHcCCCeEEEEecCcccCCCChHHH----HHHHh-cccccccCCHHHHHHH
Confidence            3 6789999999999999999999999999999999999998876433222211    11111 2335578899999999


Q ss_pred             HHhCCCcEEEEe
Q 019861          307 CRACGLVDFKCT  318 (334)
Q Consensus       307 l~~~Gf~~v~~~  318 (334)
                      ++++||++++..
T Consensus       174 l~~aGf~~~~~~  185 (256)
T 1nkv_A          174 FDDLGYDVVEMV  185 (256)
T ss_dssp             HHTTTBCCCEEE
T ss_pred             HHHCCCeeEEEE
Confidence            999999987754

>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A*

Probab=99.81  E-value=1.4e-18  Score=155.00  Aligned_cols=151  Identities=14%  Similarity=0.123  Sum_probs=117.7

Q ss_pred             CcHHHHHHHHcccC-CCCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcC---------------
Q 019861          161 GPEKEFELMKGYLK-PVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQE---------------  224 (334)
Q Consensus       161 ~~~~~~~~l~~~l~-~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~---------------  224 (334)
                      ........+...+. ..++.+|||||||+|.++..+++. +..+++|+|+++.+++.++++....               
T Consensus        29 ~~~~~~~~~l~~l~~~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~  107 (267)
T 3kkz_A           29 GSPEVTLKALSFIDNLTEKSLIADIGCGTGGQTMVLAGH-VTGQVTGLDFLSGFIDIFNRNARQSGLQNRVTGIVGSMDD  107 (267)
T ss_dssp             CCHHHHHHHHTTCCCCCTTCEEEEETCTTCHHHHHHHTT-CSSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTS
T ss_pred             CCHHHHHHHHHhcccCCCCCEEEEeCCCCCHHHHHHHhc-cCCEEEEEeCCHHHHHHHHHHHHHcCCCcCcEEEEcChhh
Confidence            34455555666665 556889999999999999999998 4569999999999999999886432               


Q ss_pred             CCCCCCCceEEEeCccccCCCCHHHHHHHHHHcccCCcEEEEEEeccCCCCCchHHHHHHHHHhhhhcCccCCCCHHHHH
Q 019861          225 SNFPKDSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIE  304 (334)
Q Consensus       225 ~~~~~~~fD~V~~~~vl~h~~d~~~~L~~i~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~l~  304 (334)
                      .++++++||+|++..+++|+ ++..+|+++.++|+|||++++.++............. .+.  ..   ...+.+.+++.
T Consensus       108 ~~~~~~~fD~i~~~~~~~~~-~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~-~~~--~~---~~~~~~~~~~~  180 (267)
T 3kkz_A          108 LPFRNEELDLIWSEGAIYNI-GFERGLNEWRKYLKKGGYLAVSECSWFTDERPAEIND-FWM--DA---YPEIDTIPNQV  180 (267)
T ss_dssp             CCCCTTCEEEEEESSCGGGT-CHHHHHHHHGGGEEEEEEEEEEEEEESSSCCCHHHHH-HHH--HH---CTTCEEHHHHH
T ss_pred             CCCCCCCEEEEEEcCCceec-CHHHHHHHHHHHcCCCCEEEEEEeeecCCCChHHHHH-HHH--Hh---CCCCCCHHHHH
Confidence            14567899999999999999 8999999999999999999999987543322222221 211  11   23567899999


Q ss_pred             HHHHhCCCcEEEEee
Q 019861          305 DLCRACGLVDFKCTR  319 (334)
Q Consensus       305 ~ll~~~Gf~~v~~~~  319 (334)
                      ++++++||++++...
T Consensus       181 ~~l~~aGf~~v~~~~  195 (267)
T 3kkz_A          181 AKIHKAGYLPVATFI  195 (267)
T ss_dssp             HHHHHTTEEEEEEEE
T ss_pred             HHHHHCCCEEEEEEE
Confidence            999999999988654

>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A*

Probab=99.80  E-value=1.8e-18  Score=153.07  Aligned_cols=152  Identities=14%  Similarity=0.139  Sum_probs=117.5

Q ss_pred             CCcHHHHHHHHccc-CCCCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcC--------------
Q 019861          160 PGPEKEFELMKGYL-KPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQE--------------  224 (334)
Q Consensus       160 ~~~~~~~~~l~~~l-~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~--------------  224 (334)
                      +........+...+ ...++.+|||||||+|.++..+++.++ .+++|+|+++.+++.++++....              
T Consensus        28 ~~~~~~~~~~l~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~  106 (257)
T 3f4k_A           28 PGSPEATRKAVSFINELTDDAKIADIGCGTGGQTLFLADYVK-GQITGIDLFPDFIEIFNENAVKANCADRVKGITGSMD  106 (257)
T ss_dssp             SCCHHHHHHHHTTSCCCCTTCEEEEETCTTSHHHHHHHHHCC-SEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTT
T ss_pred             CCCHHHHHHHHHHHhcCCCCCeEEEeCCCCCHHHHHHHHhCC-CeEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChh
Confidence            33445555566665 445678999999999999999999975 49999999999999999876532              


Q ss_pred             -CCCCCCCceEEEeCccccCCCCHHHHHHHHHHcccCCcEEEEEEeccCCCCCchHHHHHHHHHhhhhcCccCCCCHHHH
Q 019861          225 -SNFPKDSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREI  303 (334)
Q Consensus       225 -~~~~~~~fD~V~~~~vl~h~~d~~~~L~~i~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~l  303 (334)
                       .++++++||+|++..+++|+ ++..+|+++.++|+|||++++.+++.............+..   .   ...+.+.+++
T Consensus       107 ~~~~~~~~fD~v~~~~~l~~~-~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~---~---~~~~~~~~~~  179 (257)
T 3f4k_A          107 NLPFQNEELDLIWSEGAIYNI-GFERGMNEWSKYLKKGGFIAVSEASWFTSERPAEIEDFWMD---A---YPEISVIPTC  179 (257)
T ss_dssp             SCSSCTTCEEEEEEESCSCCC-CHHHHHHHHHTTEEEEEEEEEEEEEESSSCCCHHHHHHHHH---H---CTTCCBHHHH
T ss_pred             hCCCCCCCEEEEEecChHhhc-CHHHHHHHHHHHcCCCcEEEEEEeeccCCCChHHHHHHHHH---h---CCCCCCHHHH
Confidence             14567899999999999999 89999999999999999999999875433222222222111   1   2336799999


Q ss_pred             HHHHHhCCCcEEEEee
Q 019861          304 EDLCRACGLVDFKCTR  319 (334)
Q Consensus       304 ~~ll~~~Gf~~v~~~~  319 (334)
                      .++++++||++++...
T Consensus       180 ~~~l~~aGf~~v~~~~  195 (257)
T 3f4k_A          180 IDKMERAGYTPTAHFI  195 (257)
T ss_dssp             HHHHHHTTEEEEEEEE
T ss_pred             HHHHHHCCCeEEEEEE
Confidence            9999999999988543

>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei}

Probab=99.80  E-value=9e-19  Score=156.89  Aligned_cols=153  Identities=18%  Similarity=0.233  Sum_probs=117.1

Q ss_pred             HHHHcccCCCCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcC--------------CCCCCCCc
Q 019861          167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQE--------------SNFPKDSI  232 (334)
Q Consensus       167 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~--------------~~~~~~~f  232 (334)
                      +.+.......++.+|||||||+|.++..+++.++..+++|+|+++.+++.+++++...              .++++++|
T Consensus        27 ~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~f  106 (276)
T 3mgg_A           27 KLLHHDTVYPPGAKVLEAGCGIGAQTVILAKNNPDAEITSIDISPESLEKARENTEKNGIKNVKFLQANIFSLPFEDSSF  106 (276)
T ss_dssp             HHHHTTCCCCTTCEEEETTCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGCCSCTTCE
T ss_pred             HHHhhcccCCCCCeEEEecCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEcccccCCCCCCCe
Confidence            4444555556788999999999999999999977789999999999999999876432              14567899


Q ss_pred             eEEEeCccccCCCCHHHHHHHHHHcccCCcEEEEEEeccCCCC--CchHHHHHHHHHhhh--hcCccCCCCHHHHHHHHH
Q 019861          233 DAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPF--NLIPFSRLLRQNMMQ--ISGSYTFLSEREIEDLCR  308 (334)
Q Consensus       233 D~V~~~~vl~h~~d~~~~L~~i~r~LkpgG~lii~~~~~~~~~--~~~~~~~~~~~~~~~--~~~~~~~~t~~~l~~ll~  308 (334)
                      |+|++..+++|++++..+|+++.++|+|||++++.++......  ...+.....+..+..  ...+...++.+++.++|+
T Consensus       107 D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~  186 (276)
T 3mgg_A          107 DHIFVCFVLEHLQSPEEALKSLKKVLKPGGTITVIEGDHGSCYFHPEGKKAIEAWNCLIRVQAYMKGNSLVGRQIYPLLQ  186 (276)
T ss_dssp             EEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEECGGGCEEESCCHHHHHHHHHHHHHHHHTTCCTTGGGGHHHHHH
T ss_pred             eEEEEechhhhcCCHHHHHHHHHHHcCCCcEEEEEEcCCCCceECCCcHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHH
Confidence            9999999999999999999999999999999999987653321  111222222211111  122445678899999999


Q ss_pred             hCCCcEEEEee
Q 019861          309 ACGLVDFKCTR  319 (334)
Q Consensus       309 ~~Gf~~v~~~~  319 (334)
                      ++||++++...
T Consensus       187 ~aGf~~v~~~~  197 (276)
T 3mgg_A          187 ESGFEKIRVEP  197 (276)
T ss_dssp             HTTCEEEEEEE
T ss_pred             HCCCCeEEEee
Confidence            99999988553

>3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis}

Probab=99.80  E-value=2.3e-18  Score=159.87  Aligned_cols=163  Identities=13%  Similarity=0.125  Sum_probs=124.3

Q ss_pred             HHHcccCCCC-CCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCC-------------CC---CCC
Q 019861          168 LMKGYLKPVL-GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES-------------NF---PKD  230 (334)
Q Consensus       168 ~l~~~l~~~~-~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~-------------~~---~~~  230 (334)
                      .+...+...+ +.+|||||||+|.++..+++.++..+++++|+ +.+++.++++.....             ..   ..+
T Consensus       169 ~~l~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~  247 (352)
T 3mcz_A          169 DVVSELGVFARARTVIDLAGGHGTYLAQVLRRHPQLTGQIWDL-PTTRDAARKTIHAHDLGGRVEFFEKNLLDARNFEGG  247 (352)
T ss_dssp             HHHHTCGGGTTCCEEEEETCTTCHHHHHHHHHCTTCEEEEEEC-GGGHHHHHHHHHHTTCGGGEEEEECCTTCGGGGTTC
T ss_pred             HHHHhCCCcCCCCEEEEeCCCcCHHHHHHHHhCCCCeEEEEEC-HHHHHHHHHHHHhcCCCCceEEEeCCcccCcccCCC
Confidence            3444444444 78999999999999999999988889999999 889999988754321             11   345


Q ss_pred             CceEEEeCccccCCCCH--HHHHHHHHHcccCCcEEEEEEeccCCCCCchHHHHHHH-HHhhhhcCccCCCCHHHHHHHH
Q 019861          231 SIDAVHAGAAIHCWSSP--STGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLR-QNMMQISGSYTFLSEREIEDLC  307 (334)
Q Consensus       231 ~fD~V~~~~vl~h~~d~--~~~L~~i~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~t~~~l~~ll  307 (334)
                      .||+|++.+++||++++  ..+|++++++|+|||++++.++..+.... .+...... ........+...++.++|.+++
T Consensus       248 ~~D~v~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll  326 (352)
T 3mcz_A          248 AADVVMLNDCLHYFDAREAREVIGHAAGLVKPGGALLILTMTMNDDRV-TPALSADFSLHMMVNTNHGELHPTPWIAGVV  326 (352)
T ss_dssp             CEEEEEEESCGGGSCHHHHHHHHHHHHHTEEEEEEEEEEEECCCTTSS-SSHHHHHHHHHHHHHSTTCCCCCHHHHHHHH
T ss_pred             CccEEEEecccccCCHHHHHHHHHHHHHHcCCCCEEEEEEeccCCCCC-CCchHHHhhHHHHhhCCCCCcCCHHHHHHHH
Confidence            69999999999999977  78999999999999999999987754322 12222221 1222122345678999999999


Q ss_pred             HhCCCcEEEEeecCcEEEEEEEcCCC
Q 019861          308 RACGLVDFKCTRNRGFVMFTATKPSQ  333 (334)
Q Consensus       308 ~~~Gf~~v~~~~~g~~~~~~a~K~~~  333 (334)
                      +++||++++. ..|.+.+++++||+-
T Consensus       327 ~~aGf~~~~~-~~g~~~l~~a~kp~~  351 (352)
T 3mcz_A          327 RDAGLAVGER-SIGRYTLLIGQRSSG  351 (352)
T ss_dssp             HHTTCEEEEE-EETTEEEEEEECCCC
T ss_pred             HHCCCceeee-ccCceEEEEEecCCC
Confidence            9999999985 456799999999863

>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=99.80  E-value=2.6e-19  Score=152.99  Aligned_cols=140  Identities=11%  Similarity=0.093  Sum_probs=112.5

Q ss_pred             CCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcC---------CCCCCCCceEEEeCccccCCC--C
Q 019861          178 GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQE---------SNFPKDSIDAVHAGAAIHCWS--S  246 (334)
Q Consensus       178 ~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~---------~~~~~~~fD~V~~~~vl~h~~--d  246 (334)
                      +.+|||+|||+|.++..++..+.  +++|+|+++.+++.++++....         .++++++||+|++..+++|++  +
T Consensus        42 ~~~vLDiGcG~G~~~~~l~~~~~--~v~gvD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~  119 (203)
T 3h2b_A           42 DGVILDVGSGTGRWTGHLASLGH--QIEGLEPATRLVELARQTHPSVTFHHGTITDLSDSPKRWAGLLAWYSLIHMGPGE  119 (203)
T ss_dssp             CSCEEEETCTTCHHHHHHHHTTC--CEEEECCCHHHHHHHHHHCTTSEEECCCGGGGGGSCCCEEEEEEESSSTTCCTTT
T ss_pred             CCeEEEecCCCCHHHHHHHhcCC--eEEEEeCCHHHHHHHHHhCCCCeEEeCcccccccCCCCeEEEEehhhHhcCCHHH
Confidence            67999999999999999999875  9999999999999999874321         145678999999999999997  8


Q ss_pred             HHHHHHHHHHcccCCcEEEEEEeccCCCCCchHHHHHHHHHhhhhcCccCCCCHHHHHHHHHhCCCcEEEEeec--CcEE
Q 019861          247 PSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLCRACGLVDFKCTRN--RGFV  324 (334)
Q Consensus       247 ~~~~L~~i~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~l~~ll~~~Gf~~v~~~~~--g~~~  324 (334)
                      +..+|+++.++|+|||++++.++.......           +.....+..+++.+++.++++++||++++....  ..+.
T Consensus       120 ~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~p~~  188 (203)
T 3h2b_A          120 LPDALVALRMAVEDGGGLLMSFFSGPSLEP-----------MYHPVATAYRWPLPELAQALETAGFQVTSSHWDPRFPHA  188 (203)
T ss_dssp             HHHHHHHHHHTEEEEEEEEEEEECCSSCEE-----------ECCSSSCEEECCHHHHHHHHHHTTEEEEEEEECTTSSEE
T ss_pred             HHHHHHHHHHHcCCCcEEEEEEccCCchhh-----------hhchhhhhccCCHHHHHHHHHHCCCcEEEEEecCCCcch
Confidence            899999999999999999999987654211           111123556789999999999999999885532  3455


Q ss_pred             EEEEEc
Q 019861          325 MFTATK  330 (334)
Q Consensus       325 ~~~a~K  330 (334)
                      .+...|
T Consensus       189 ~l~~~~  194 (203)
T 3h2b_A          189 YLTAEA  194 (203)
T ss_dssp             EEEEEE
T ss_pred             hhhhhh
Confidence            544444

>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413}

Probab=99.80  E-value=5.1e-19  Score=158.96  Aligned_cols=145  Identities=23%  Similarity=0.298  Sum_probs=111.4

Q ss_pred             HHHcccCCCCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcC---------CCCCCCCceEEEeC
Q 019861          168 LMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQE---------SNFPKDSIDAVHAG  238 (334)
Q Consensus       168 ~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~---------~~~~~~~fD~V~~~  238 (334)
                      .+.+.+...++.+|||||||+|.++..+++.+  .+|+|+|+|+.+++.++++....         .++ +++||+|++.
T Consensus        48 ~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~--~~v~gvD~s~~~~~~a~~~~~~~~~~~~d~~~~~~-~~~fD~v~~~  124 (279)
T 3ccf_A           48 DLLQLLNPQPGEFILDLGCGTGQLTEKIAQSG--AEVLGTDNAATMIEKARQNYPHLHFDVADARNFRV-DKPLDAVFSN  124 (279)
T ss_dssp             HHHHHHCCCTTCEEEEETCTTSHHHHHHHHTT--CEEEEEESCHHHHHHHHHHCTTSCEEECCTTTCCC-SSCEEEEEEE
T ss_pred             HHHHHhCCCCCCEEEEecCCCCHHHHHHHhCC--CeEEEEECCHHHHHHHHhhCCCCEEEECChhhCCc-CCCcCEEEEc
Confidence            33444555668899999999999999999854  49999999999999999874211         133 5789999999


Q ss_pred             ccccCCCCHHHHHHHHHHcccCCcEEEEEEeccCCCCCchHHHHHHHHHhh-------hhcCccCCCCHHHHHHHHHhCC
Q 019861          239 AAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMM-------QISGSYTFLSEREIEDLCRACG  311 (334)
Q Consensus       239 ~vl~h~~d~~~~L~~i~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~t~~~l~~ll~~~G  311 (334)
                      .+++|++|+..+|++++++|+|||++++.++.....   ..+...+.....       ....+..+++.+++.++|+++|
T Consensus       125 ~~l~~~~d~~~~l~~~~~~LkpgG~l~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aG  201 (279)
T 3ccf_A          125 AMLHWVKEPEAAIASIHQALKSGGRFVAEFGGKGNI---KYILEALYNALETLGIHNPQALNPWYFPSIGEYVNILEKQG  201 (279)
T ss_dssp             SCGGGCSCHHHHHHHHHHHEEEEEEEEEEEECTTTT---HHHHHHHHHHHHHHTCCCGGGGCCCCCCCHHHHHHHHHHHT
T ss_pred             chhhhCcCHHHHHHHHHHhcCCCcEEEEEecCCcch---HHHHHHHHHHHHhcCCccccCcCceeCCCHHHHHHHHHHcC
Confidence            999999999999999999999999999998875432   122222211111       1223456789999999999999


Q ss_pred             CcEEEEe
Q 019861          312 LVDFKCT  318 (334)
Q Consensus       312 f~~v~~~  318 (334)
                      |++++..
T Consensus       202 f~~~~~~  208 (279)
T 3ccf_A          202 FDVTYAA  208 (279)
T ss_dssp             EEEEEEE
T ss_pred             CEEEEEE
Confidence            9987754

>2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A*

Probab=99.80  E-value=1.7e-18  Score=156.64  Aligned_cols=137  Identities=9%  Similarity=0.044  Sum_probs=103.3

Q ss_pred             CCCCcEEEECCCcCHHHH----HHHHcCCCCeE--EEEeCCHHHHHHHHHHHhcCC-----------------------C
Q 019861          176 VLGGNIIDASCGSGLFSR----IFAKSGLFSLV--VALDYSENMLKQCYEFVQQES-----------------------N  226 (334)
Q Consensus       176 ~~~~~vLDiGcG~G~~~~----~l~~~~~~~~v--~giD~s~~~~~~a~~~~~~~~-----------------------~  226 (334)
                      .++.+|||||||+|.++.    .+...++...+  +|+|+|+.|++.++++.....                       +
T Consensus        51 ~~~~~VLDiG~GtG~~~~~~l~~l~~~~~~~~v~~~~vD~S~~ml~~a~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~  130 (292)
T 2aot_A           51 KSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKTSNLENVKFAWHKETSSEYQSRMLEK  130 (292)
T ss_dssp             CSEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECSCHHHHHHHHHHHHTCSSCTTEEEEEECSCHHHHHHHHHTT
T ss_pred             CCCCeEEEEcCCCCHHHHHHHHHHHhhCCCceeeEEEEeCCHHHHHHHHHHHHhccCCCcceEEEEecchhhhhhhhccc
Confidence            456799999999997544    34444455544  999999999999998864310                       1


Q ss_pred             CCCCCceEEEeCccccCCCCHHHHHHHHHHcccCCcEEEEEEeccCCCCCchHHHHHHHHHhhh--hcCccCCCCHHHHH
Q 019861          227 FPKDSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQ--ISGSYTFLSEREIE  304 (334)
Q Consensus       227 ~~~~~fD~V~~~~vl~h~~d~~~~L~~i~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~t~~~l~  304 (334)
                      +++++||+|++.++|||++|+..+|++++++|||||++++.....+.     .+...+......  ...+..+++.+++.
T Consensus       131 ~~~~~fD~V~~~~~l~~~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~  205 (292)
T 2aot_A          131 KELQKWDFIHMIQMLYYVKDIPATLKFFHSLLGTNAKMLIIVVSGSS-----GWDKLWKKYGSRFPQDDLCQYITSDDLT  205 (292)
T ss_dssp             TCCCCEEEEEEESCGGGCSCHHHHHHHHHHTEEEEEEEEEEEECTTS-----HHHHHHHHHGGGSCCCTTCCCCCHHHHH
T ss_pred             cCCCceeEEEEeeeeeecCCHHHHHHHHHHHcCCCcEEEEEEecCCc-----cHHHHHHHHHHhccCCCcccCCCHHHHH
Confidence            35789999999999999999999999999999999999998776432     222222121111  12256788999999


Q ss_pred             HHHHhCCCcEEEE
Q 019861          305 DLCRACGLVDFKC  317 (334)
Q Consensus       305 ~ll~~~Gf~~v~~  317 (334)
                      ++|+++||+++..
T Consensus       206 ~~l~~aGf~~~~~  218 (292)
T 2aot_A          206 QMLDNLGLKYECY  218 (292)
T ss_dssp             HHHHHHTCCEEEE
T ss_pred             HHHHHCCCceEEE
Confidence            9999999988763

>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus}

Probab=99.79  E-value=4e-19  Score=147.54  Aligned_cols=140  Identities=15%  Similarity=0.184  Sum_probs=113.4

Q ss_pred             CCCCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhc------CCCCCCCCceEEEeCccccCCCCH
Q 019861          174 KPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQ------ESNFPKDSIDAVHAGAAIHCWSSP  247 (334)
Q Consensus       174 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~------~~~~~~~~fD~V~~~~vl~h~~d~  247 (334)
                      ...++.+|||+|||+|.++..+++.+.  +++|+|+++.+++.++++...      +.++++++||+|++..+++|++++
T Consensus        14 ~~~~~~~vLDiG~G~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~v~~~~~d~~~~~~~~D~v~~~~~l~~~~~~   91 (170)
T 3i9f_A           14 FEGKKGVIVDYGCGNGFYCKYLLEFAT--KLYCIDINVIALKEVKEKFDSVITLSDPKEIPDNSVDFILFANSFHDMDDK   91 (170)
T ss_dssp             HSSCCEEEEEETCTTCTTHHHHHTTEE--EEEEECSCHHHHHHHHHHCTTSEEESSGGGSCTTCEEEEEEESCSTTCSCH
T ss_pred             CcCCCCeEEEECCCCCHHHHHHHhhcC--eEEEEeCCHHHHHHHHHhCCCcEEEeCCCCCCCCceEEEEEccchhcccCH
Confidence            345578999999999999999999875  999999999999999987221      135678899999999999999999


Q ss_pred             HHHHHHHHHcccCCcEEEEEEeccCCCCCchHHHHHHHHHhhhhcCccCCCCHHHHHHHHHhCCCcEEEEeecC-cEEEE
Q 019861          248 STGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLCRACGLVDFKCTRNR-GFVMF  326 (334)
Q Consensus       248 ~~~L~~i~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~l~~ll~~~Gf~~v~~~~~g-~~~~~  326 (334)
                      ..+++++.++|+|||++++.++........              ..+...++.+++.++++  ||++++....+ ..+.+
T Consensus        92 ~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~l~--Gf~~~~~~~~~~~~~~l  155 (170)
T 3i9f_A           92 QHVISEVKRILKDDGRVIIIDWRKENTGIG--------------PPLSIRMDEKDYMGWFS--NFVVEKRFNPTPYHFGL  155 (170)
T ss_dssp             HHHHHHHHHHEEEEEEEEEEEECSSCCSSS--------------SCGGGCCCHHHHHHHTT--TEEEEEEECSSTTEEEE
T ss_pred             HHHHHHHHHhcCCCCEEEEEEcCccccccC--------------chHhhhcCHHHHHHHHh--CcEEEEccCCCCceEEE
Confidence            999999999999999999998876532111              12445689999999999  99999876554 44555


Q ss_pred             EEEcC
Q 019861          327 TATKP  331 (334)
Q Consensus       327 ~a~K~  331 (334)
                      +++|+
T Consensus       156 ~~~~~  160 (170)
T 3i9f_A          156 VLKRK  160 (170)
T ss_dssp             EEEEC
T ss_pred             EEecC
Confidence            55543

>3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str}

Probab=99.79  E-value=1.7e-18  Score=153.06  Aligned_cols=151  Identities=17%  Similarity=0.143  Sum_probs=111.1

Q ss_pred             HHHHcccCCCCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcC-----------CCCCCCCceEE
Q 019861          167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQE-----------SNFPKDSIDAV  235 (334)
Q Consensus       167 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~-----------~~~~~~~fD~V  235 (334)
                      ..+...+...++.+|||||||+|.++..+++.+. .+++|+|+++.+++.++++....           .++++++||+|
T Consensus        34 ~~l~~~~~~~~~~~vLD~GcG~G~~~~~l~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~v  112 (253)
T 3g5l_A           34 HELKKMLPDFNQKTVLDLGCGFGWHCIYAAEHGA-KKVLGIDLSERMLTEAKRKTTSPVVCYEQKAIEDIAIEPDAYNVV  112 (253)
T ss_dssp             HHHHTTCCCCTTCEEEEETCTTCHHHHHHHHTTC-SEEEEEESCHHHHHHHHHHCCCTTEEEEECCGGGCCCCTTCEEEE
T ss_pred             HHHHHhhhccCCCEEEEECCCCCHHHHHHHHcCC-CEEEEEECCHHHHHHHHHhhccCCeEEEEcchhhCCCCCCCeEEE
Confidence            3556667766789999999999999999999874 48999999999999999876421           25667899999


Q ss_pred             EeCccccCCCCHHHHHHHHHHcccCCcEEEEEEeccCCCCCc--------------hHHHHHHHH-----HhhhhcCccC
Q 019861          236 HAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNL--------------IPFSRLLRQ-----NMMQISGSYT  296 (334)
Q Consensus       236 ~~~~vl~h~~d~~~~L~~i~r~LkpgG~lii~~~~~~~~~~~--------------~~~~~~~~~-----~~~~~~~~~~  296 (334)
                      ++..+++|+.++..+|++++++|+|||++++.+++.......              .++...+..     .+........
T Consensus       113 ~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  192 (253)
T 3g5l_A          113 LSSLALHYIASFDDICKKVYINLKSSGSFIFSVEHPVFTADGRQDWYTDETGNKLHWPVDRYFNESMRTSHFLGEDVQKY  192 (253)
T ss_dssp             EEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEECHHHHSSSSCSCEECSSCCEEEEEECCTTCCCEEEEEETTEEEEEE
T ss_pred             EEchhhhhhhhHHHHHHHHHHHcCCCcEEEEEeCCCccccCccccceeccCCceEEEEeccccccceEEEeeccccCccE
Confidence            999999999999999999999999999999987653100000              000000000     0000000112


Q ss_pred             CCCHHHHHHHHHhCCCcEEEEe
Q 019861          297 FLSEREIEDLCRACGLVDFKCT  318 (334)
Q Consensus       297 ~~t~~~l~~ll~~~Gf~~v~~~  318 (334)
                      .++.+++.++|+++||++++..
T Consensus       193 ~~t~~~~~~~l~~aGF~~~~~~  214 (253)
T 3g5l_A          193 HRTVTTYIQTLLKNGFQINSVI  214 (253)
T ss_dssp             CCCHHHHHHHHHHTTEEEEEEE
T ss_pred             ecCHHHHHHHHHHcCCeeeeee
Confidence            2399999999999999998865

>3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A*

Probab=99.79  E-value=3.4e-18  Score=156.12  Aligned_cols=146  Identities=18%  Similarity=0.146  Sum_probs=115.8

Q ss_pred             HHHHcccC-CCCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcC---------------CCCCCC
Q 019861          167 ELMKGYLK-PVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQE---------------SNFPKD  230 (334)
Q Consensus       167 ~~l~~~l~-~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~---------------~~~~~~  230 (334)
                      +.+.+.+. ..++.+|||||||+|.++..+++.. ..+|+|+|+++.+++.++++....               .+++++
T Consensus       106 ~~l~~~l~~~~~~~~vLDiGcG~G~~~~~la~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~  184 (312)
T 3vc1_A          106 EFLMDHLGQAGPDDTLVDAGCGRGGSMVMAHRRF-GSRVEGVTLSAAQADFGNRRARELRIDDHVRSRVCNMLDTPFDKG  184 (312)
T ss_dssp             HHHHTTSCCCCTTCEEEEESCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCCCTT
T ss_pred             HHHHHHhccCCCCCEEEEecCCCCHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChhcCCCCCC
Confidence            45666666 6678899999999999999999882 249999999999999999875532               145678


Q ss_pred             CceEEEeCccccCCCCHHHHHHHHHHcccCCcEEEEEEeccCCCC-CchHHHHHHHHHhhhhcCccCCCCHHHHHHHHHh
Q 019861          231 SIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPF-NLIPFSRLLRQNMMQISGSYTFLSEREIEDLCRA  309 (334)
Q Consensus       231 ~fD~V~~~~vl~h~~d~~~~L~~i~r~LkpgG~lii~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~t~~~l~~ll~~  309 (334)
                      +||+|++..+++|+ ++..+|+++.++|||||++++.++...... ....+.......+     ...+++.+++.+++++
T Consensus       185 ~fD~V~~~~~l~~~-~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~s~~~~~~~l~~  258 (312)
T 3vc1_A          185 AVTASWNNESTMYV-DLHDLFSEHSRFLKVGGRYVTITGCWNPRYGQPSKWVSQINAHF-----ECNIHSRREYLRAMAD  258 (312)
T ss_dssp             CEEEEEEESCGGGS-CHHHHHHHHHHHEEEEEEEEEEEEEECTTTCSCCHHHHHHHHHH-----TCCCCBHHHHHHHHHT
T ss_pred             CEeEEEECCchhhC-CHHHHHHHHHHHcCCCcEEEEEEccccccccchhHHHHHHHhhh-----cCCCCCHHHHHHHHHH
Confidence            99999999999999 699999999999999999999998876533 2223322222221     2357899999999999


Q ss_pred             CCCcEEEEee
Q 019861          310 CGLVDFKCTR  319 (334)
Q Consensus       310 ~Gf~~v~~~~  319 (334)
                      +||++++...
T Consensus       259 aGf~~~~~~~  268 (312)
T 3vc1_A          259 NRLVPHTIVD  268 (312)
T ss_dssp             TTEEEEEEEE
T ss_pred             CCCEEEEEEe
Confidence            9999888654

>4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli}

Probab=99.79  E-value=6.5e-19  Score=158.68  Aligned_cols=138  Identities=17%  Similarity=0.157  Sum_probs=106.8

Q ss_pred             CCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCC----------------CCCCCCceEEEeCccc
Q 019861          178 GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES----------------NFPKDSIDAVHAGAAI  241 (334)
Q Consensus       178 ~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~----------------~~~~~~fD~V~~~~vl  241 (334)
                      +.+|||||||+|.++..+++.+.  +++|+|+++.+++.+++++....                ++++++||+|++..++
T Consensus        69 ~~~vLDiGcG~G~~~~~l~~~~~--~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~~~~l  146 (285)
T 4htf_A           69 KLRVLDAGGGEGQTAIKMAERGH--QVILCDLSAQMIDRAKQAAEAKGVSDNMQFIHCAAQDVASHLETPVDLILFHAVL  146 (285)
T ss_dssp             CCEEEEETCTTCHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHC-CCGGGEEEEESCGGGTGGGCSSCEEEEEEESCG
T ss_pred             CCEEEEeCCcchHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcCCCcceEEEEcCHHHhhhhcCCCceEEEECchh
Confidence            67999999999999999999865  99999999999999998764321                1467899999999999


Q ss_pred             cCCCCHHHHHHHHHHcccCCcEEEEEEeccCCCCCchHHHHHHHHHhh--------hhcCccCCCCHHHHHHHHHhCCCc
Q 019861          242 HCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMM--------QISGSYTFLSEREIEDLCRACGLV  313 (334)
Q Consensus       242 ~h~~d~~~~L~~i~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~t~~~l~~ll~~~Gf~  313 (334)
                      +|++++..+|+++.++|+|||++++.+++.......... ...+....        ....+..+++.+++.++++++||+
T Consensus       147 ~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aGf~  225 (285)
T 4htf_A          147 EWVADPRSVLQTLWSVLRPGGVLSLMFYNAHGLLMHNMV-AGNFDYVQAGMPKKKKRTLSPDYPRDPTQVYLWLEEAGWQ  225 (285)
T ss_dssp             GGCSCHHHHHHHHHHTEEEEEEEEEEEEBHHHHHHHHHH-TTCHHHHHTTCCCC----CCCSCCBCHHHHHHHHHHTTCE
T ss_pred             hcccCHHHHHHHHHHHcCCCeEEEEEEeCCchHHHHHHH-hcCHHHHhhhccccccccCCCCCCCCHHHHHHHHHHCCCc
Confidence            999999999999999999999999999875321000000 00000110        112345788999999999999999


Q ss_pred             EEEEe
Q 019861          314 DFKCT  318 (334)
Q Consensus       314 ~v~~~  318 (334)
                      +++..
T Consensus       226 v~~~~  230 (285)
T 4htf_A          226 IMGKT  230 (285)
T ss_dssp             EEEEE
T ss_pred             eeeee
Confidence            88744

>3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis}

Probab=99.79  E-value=2.5e-18  Score=156.50  Aligned_cols=156  Identities=15%  Similarity=0.183  Sum_probs=116.8

Q ss_pred             CCCCcEEEECCCcCHHHHHHH-HcCCCCeEEEEeCCHHHHHHHHHHHhcCC---------------CCCCCCceEEEeCc
Q 019861          176 VLGGNIIDASCGSGLFSRIFA-KSGLFSLVVALDYSENMLKQCYEFVQQES---------------NFPKDSIDAVHAGA  239 (334)
Q Consensus       176 ~~~~~vLDiGcG~G~~~~~l~-~~~~~~~v~giD~s~~~~~~a~~~~~~~~---------------~~~~~~fD~V~~~~  239 (334)
                      .++.+|||||||+|.++..++ ...+..+++|+|+++.+++.++++.....               +++ ++||+|++..
T Consensus       117 ~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~-~~fD~v~~~~  195 (305)
T 3ocj_A          117 RPGCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLAAGHALAGQITLHRQDAWKLDTR-EGYDLLTSNG  195 (305)
T ss_dssp             CTTCEEEETTCTTCHHHHTSCCTTCTTCEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEECCGGGCCCC-SCEEEEECCS
T ss_pred             CCCCEEEEecCCCCHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHhcCCCCceEEEECchhcCCcc-CCeEEEEECC
Confidence            457899999999999999985 44556799999999999999999875321               344 8999999999


Q ss_pred             cccCCCCHHH---HHHHHHHcccCCcEEEEEEeccCCCCC---------chHHHHHHHHH-hhh--hcCccCCCCHHHHH
Q 019861          240 AIHCWSSPST---GVAEISRVLRPGGVFVGTTYIVDGPFN---------LIPFSRLLRQN-MMQ--ISGSYTFLSEREIE  304 (334)
Q Consensus       240 vl~h~~d~~~---~L~~i~r~LkpgG~lii~~~~~~~~~~---------~~~~~~~~~~~-~~~--~~~~~~~~t~~~l~  304 (334)
                      +++|++++..   +++++.++|+|||++++.+........         ..+........ +..  ......+++.+++.
T Consensus       196 ~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  275 (305)
T 3ocj_A          196 LNIYEPDDARVTELYRRFWQALKPGGALVTSFLTPPPALSPDSPWDMQAIDPHDLQLQQLVFTRLIQPRWNALRTHAQTR  275 (305)
T ss_dssp             SGGGCCCHHHHHHHHHHHHHHEEEEEEEEEECCCCCTTTCTTCCCCGGGSCHHHHHHHHHHHHHTTCCSCCCCCCHHHHH
T ss_pred             hhhhcCCHHHHHHHHHHHHHhcCCCeEEEEEecCCCCcccccccceeeccccchhhhhhhHHHHHHhhhhhccCCHHHHH
Confidence            9999999975   799999999999999998866532110         00100011111 111  11233568999999


Q ss_pred             HHHHhCCCcEEEEe--ecCcEEEEEEEcCC
Q 019861          305 DLCRACGLVDFKCT--RNRGFVMFTATKPS  332 (334)
Q Consensus       305 ~ll~~~Gf~~v~~~--~~g~~~~~~a~K~~  332 (334)
                      ++++++||++++..  ..+.+..++++||.
T Consensus       276 ~~l~~aGF~~v~~~~~~~~~~~~v~a~Kpa  305 (305)
T 3ocj_A          276 AQLEEAGFTDLRFEDDRARLFPTVIARKPA  305 (305)
T ss_dssp             HHHHHTTCEEEEEECCTTSSSCEEEEECCC
T ss_pred             HHHHHCCCEEEEEEcccCceeeEEEEecCC
Confidence            99999999998876  44567788889873

>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A

Probab=99.79  E-value=8e-19  Score=151.68  Aligned_cols=146  Identities=15%  Similarity=0.090  Sum_probs=105.4

Q ss_pred             HHHHcccCCCCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCC-------------------CC
Q 019861          167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES-------------------NF  227 (334)
Q Consensus       167 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~-------------------~~  227 (334)
                      +.+.+.+...++.+|||||||+|.++..+++.++..+++|+|+++.+++.+++++....                   +.
T Consensus        19 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~   98 (217)
T 3jwh_A           19 NGVVAALKQSNARRVIDLGCGQGNLLKILLKDSFFEQITGVDVSYRSLEIAQERLDRLRLPRNQWERLQLIQGALTYQDK   98 (217)
T ss_dssp             HHHHHHHHHTTCCEEEEETCTTCHHHHHHHHCTTCSEEEEEESCHHHHHHHHHHHTTCCCCHHHHTTEEEEECCTTSCCG
T ss_pred             HHHHHHHHhcCCCEEEEeCCCCCHHHHHHHhhCCCCEEEEEECCHHHHHHHHHHHHHhcCCcccCcceEEEeCCcccccc
Confidence            34455555456789999999999999999998866799999999999999998864211                   23


Q ss_pred             CCCCceEEEeCccccCCCCH--HHHHHHHHHcccCCcEEEEEEeccCCCCCchHHHHHHHHHhhhhcCccCCCCHHHHH-
Q 019861          228 PKDSIDAVHAGAAIHCWSSP--STGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIE-  304 (334)
Q Consensus       228 ~~~~fD~V~~~~vl~h~~d~--~~~L~~i~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~l~-  304 (334)
                      ++++||+|++..+++|++++  ..+|+++.++|+|||++++. ++..    .................|...++.+++. 
T Consensus        99 ~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~li~~-~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  173 (217)
T 3jwh_A           99 RFHGYDAATVIEVIEHLDLSRLGAFERVLFEFAQPKIVIVTT-PNIE----YNVKFANLPAGKLRHKDHRFEWTRSQFQN  173 (217)
T ss_dssp             GGCSCSEEEEESCGGGCCHHHHHHHHHHHHTTTCCSEEEEEE-EBHH----HHHHTC-----------CCSCBCHHHHHH
T ss_pred             cCCCcCEEeeHHHHHcCCHHHHHHHHHHHHHHcCCCEEEEEc-cCcc----cchhhcccccccccccccccccCHHHHHH
Confidence            34789999999999999977  79999999999999955554 4321    0000000111111223466778999999 


Q ss_pred             ---HHHHhCCCcEEEE
Q 019861          305 ---DLCRACGLVDFKC  317 (334)
Q Consensus       305 ---~ll~~~Gf~~v~~  317 (334)
                         ++++++||++...
T Consensus       174 ~~~~~~~~~Gf~v~~~  189 (217)
T 3jwh_A          174 WANKITERFAYNVQFQ  189 (217)
T ss_dssp             HHHHHHHHSSEEEEEC
T ss_pred             HHHHHHHHcCceEEEE
Confidence               9999999987653

>1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A*

Probab=99.78  E-value=5.1e-18  Score=152.90  Aligned_cols=153  Identities=18%  Similarity=0.146  Sum_probs=114.1

Q ss_pred             HHHHHcccCCCCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCC-------------CCCCCCc
Q 019861          166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES-------------NFPKDSI  232 (334)
Q Consensus       166 ~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~-------------~~~~~~f  232 (334)
                      .+.+.+.+...++.+|||||||+|.++..+++.. ..+|+|+|+|+.+++.++++.....             .++ ++|
T Consensus        53 ~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~gvd~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-~~f  130 (287)
T 1kpg_A           53 IDLALGKLGLQPGMTLLDVGCGWGATMMRAVEKY-DVNVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQFD-EPV  130 (287)
T ss_dssp             HHHHHTTTTCCTTCEEEEETCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGGCC-CCC
T ss_pred             HHHHHHHcCCCCcCEEEEECCcccHHHHHHHHHc-CCEEEEEECCHHHHHHHHHHHHhcCCCCCeEEEECChhhCC-CCe
Confidence            3455666666778899999999999999998543 2399999999999999998865321             234 789


Q ss_pred             eEEEeCccccCC--CCHHHHHHHHHHcccCCcEEEEEEeccCCCCC-------chHHHHHHHHHhhh-hcCccCCCCHHH
Q 019861          233 DAVHAGAAIHCW--SSPSTGVAEISRVLRPGGVFVGTTYIVDGPFN-------LIPFSRLLRQNMMQ-ISGSYTFLSERE  302 (334)
Q Consensus       233 D~V~~~~vl~h~--~d~~~~L~~i~r~LkpgG~lii~~~~~~~~~~-------~~~~~~~~~~~~~~-~~~~~~~~t~~~  302 (334)
                      |+|++..+++|+  .++..+|+++.++|||||++++.+++......       .............. ...+..+++.++
T Consensus       131 D~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~  210 (287)
T 1kpg_A          131 DRIVSIGAFEHFGHERYDAFFSLAHRLLPADGVMLLHTITGLHPKEIHERGLPMSFTFARFLKFIVTEIFPGGRLPSIPM  210 (287)
T ss_dssp             SEEEEESCGGGTCTTTHHHHHHHHHHHSCTTCEEEEEEEEECCHHHHTTTTCSCHHHHHHHHHHHHHHTSTTCCCCCHHH
T ss_pred             eEEEEeCchhhcChHHHHHHHHHHHHhcCCCCEEEEEEecCCCccccccccccccccccchhhhHHheeCCCCCCCCHHH
Confidence            999999999999  67899999999999999999999988643211       00000111111111 122446679999


Q ss_pred             HHHHHHhCCCcEEEEeec
Q 019861          303 IEDLCRACGLVDFKCTRN  320 (334)
Q Consensus       303 l~~ll~~~Gf~~v~~~~~  320 (334)
                      +.++++++||++++....
T Consensus       211 ~~~~l~~aGf~~~~~~~~  228 (287)
T 1kpg_A          211 VQECASANGFTVTRVQSL  228 (287)
T ss_dssp             HHHHHHTTTCEEEEEEEC
T ss_pred             HHHHHHhCCcEEEEEEeC
Confidence            999999999999886543

>2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15

Probab=99.78  E-value=4.6e-19  Score=158.09  Aligned_cols=147  Identities=17%  Similarity=0.250  Sum_probs=108.3

Q ss_pred             CCCCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcC-----------------------------
Q 019861          174 KPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQE-----------------------------  224 (334)
Q Consensus       174 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~-----------------------------  224 (334)
                      ...++.+|||||||+|.+...++..+. .+|+|+|+|+.|++.|++.+...                             
T Consensus        52 ~~~~g~~vLDiGCG~G~~~~~~~~~~~-~~v~g~D~s~~~l~~a~~~~~~~~~~~d~s~~~~~~~~~~~~~~~~~~~~~~  130 (263)
T 2a14_A           52 GGLQGDTLIDIGSGPTIYQVLAACDSF-QDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEK  130 (263)
T ss_dssp             TSCCEEEEEESSCTTCCGGGTTGGGTE-EEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHH
T ss_pred             CCCCCceEEEeCCCccHHHHHHHHhhh-cceeeccccHHHHHHHHHHHhcCCCcccchHHHHHHHhcCCCCcchhhHHHH
Confidence            445678999999999988777766653 37999999999999988654211                             


Q ss_pred             ----------------CCC---CCCCceEEEeCccccCC----CCHHHHHHHHHHcccCCcEEEEEEeccCCCCCchHHH
Q 019861          225 ----------------SNF---PKDSIDAVHAGAAIHCW----SSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFS  281 (334)
Q Consensus       225 ----------------~~~---~~~~fD~V~~~~vl~h~----~d~~~~L~~i~r~LkpgG~lii~~~~~~~~~~~~~~~  281 (334)
                                      .++   ..++||+|++..+|||+    ++...+|++++++|||||++++.+........     
T Consensus       131 ~~~~i~~~~~~D~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~i~r~LKPGG~li~~~~~~~~~~~-----  205 (263)
T 2a14_A          131 LRAAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVTTVTLRLPSYM-----  205 (263)
T ss_dssp             HHHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESSCCEEE-----
T ss_pred             HHhhhheEEeccccCCCCCCccccCCCCEeeehHHHHHhcCCHHHHHHHHHHHHHHcCCCcEEEEEEeecCccce-----
Confidence                            122   25789999999999986    34468999999999999999998765432100     


Q ss_pred             HHHHHHhhhhcCccCCCCHHHHHHHHHhCCCcEEEEeec-----------CcEEEEEEEcCC
Q 019861          282 RLLRQNMMQISGSYTFLSEREIEDLCRACGLVDFKCTRN-----------RGFVMFTATKPS  332 (334)
Q Consensus       282 ~~~~~~~~~~~~~~~~~t~~~l~~ll~~~Gf~~v~~~~~-----------g~~~~~~a~K~~  332 (334)
                            ..........++.+++.++|+++||++++....           ..+++++++|++
T Consensus       206 ------~g~~~~~~~~~~~~~l~~~l~~aGF~i~~~~~~~~~~~~~~~~~~~~~~~~a~K~~  261 (263)
T 2a14_A          206 ------VGKREFSCVALEKGEVEQAVLDAGFDIEQLLHSPQSYSVTNAANNGVCCIVARKKP  261 (263)
T ss_dssp             ------ETTEEEECCCCCHHHHHHHHHHTTEEEEEEEEECCCCCTTTCCCCCEEEEEEEECC
T ss_pred             ------eCCeEeeccccCHHHHHHHHHHCCCEEEEEeecccccccccCCCCceEEEEEEecC
Confidence                  000001223679999999999999998886542           256788888875

>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A*

Probab=99.78  E-value=3.3e-18  Score=147.37  Aligned_cols=152  Identities=18%  Similarity=0.140  Sum_probs=110.1

Q ss_pred             CCCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcC---------CCCCCCCceEEEeCccccCCC
Q 019861          175 PVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQE---------SNFPKDSIDAVHAGAAIHCWS  245 (334)
Q Consensus       175 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~---------~~~~~~~fD~V~~~~vl~h~~  245 (334)
                      ..++.+|||||||+|.++..+++.+.  +++|+|+++.+++.+++.-...         ..+++++||+|++..+++|++
T Consensus        44 ~~~~~~vLdiG~G~G~~~~~l~~~~~--~v~~~D~s~~~~~~a~~~~~~~~~~~~~d~~~~~~~~~~D~v~~~~~l~~~~  121 (218)
T 3ou2_A           44 GNIRGDVLELASGTGYWTRHLSGLAD--RVTALDGSAEMIAEAGRHGLDNVEFRQQDLFDWTPDRQWDAVFFAHWLAHVP  121 (218)
T ss_dssp             TTSCSEEEEESCTTSHHHHHHHHHSS--EEEEEESCHHHHHHHGGGCCTTEEEEECCTTSCCCSSCEEEEEEESCGGGSC
T ss_pred             CCCCCeEEEECCCCCHHHHHHHhcCC--eEEEEeCCHHHHHHHHhcCCCCeEEEecccccCCCCCceeEEEEechhhcCC
Confidence            44567999999999999999999865  9999999999999998721000         124678999999999999999


Q ss_pred             CH--HHHHHHHHHcccCCcEEEEEEeccCCCCCchHHHHH-HHHHhhh---hcC----ccCCCCHHHHHHHHHhCCCcEE
Q 019861          246 SP--STGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRL-LRQNMMQ---ISG----SYTFLSEREIEDLCRACGLVDF  315 (334)
Q Consensus       246 d~--~~~L~~i~r~LkpgG~lii~~~~~~~~~~~~~~~~~-~~~~~~~---~~~----~~~~~t~~~l~~ll~~~Gf~~v  315 (334)
                      ++  ..+|+++.++|+|||.+++.+++..... ....... .......   ...    +..+++.+++.++++++||++.
T Consensus       122 ~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~v~  200 (218)
T 3ou2_A          122 DDRFEAFWESVRSAVAPGGVVEFVDVTDHERR-LEQQDDSEPEVAVRRTLQDGRSFRIVKVFRSPAELTERLTALGWSCS  200 (218)
T ss_dssp             HHHHHHHHHHHHHHEEEEEEEEEEEECCCC-------------CEEEEECTTSCEEEEECCCCCHHHHHHHHHHTTEEEE
T ss_pred             HHHHHHHHHHHHHHcCCCeEEEEEeCCCCccc-cchhhhcccccceeeecCCcchhhHhhcCCCHHHHHHHHHHCCCEEE
Confidence            87  7899999999999999999998863211 1111000 0000000   011    2347899999999999999977


Q ss_pred             EEeecCcEEEEEEE
Q 019861          316 KCTRNRGFVMFTAT  329 (334)
Q Consensus       316 ~~~~~g~~~~~~a~  329 (334)
                      .....+.++..+++
T Consensus       201 ~~~~~~~~~~~~~~  214 (218)
T 3ou2_A          201 VDEVHPGFLYATCR  214 (218)
T ss_dssp             EEEEETTEEEEEEE
T ss_pred             eeeccccceEeecC
Confidence            66666655555544

>3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei}

Probab=99.78  E-value=4.3e-18  Score=148.26  Aligned_cols=138  Identities=19%  Similarity=0.247  Sum_probs=108.4

Q ss_pred             CCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCC-------------------CCCCCCceEEEe
Q 019861          177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES-------------------NFPKDSIDAVHA  237 (334)
Q Consensus       177 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~-------------------~~~~~~fD~V~~  237 (334)
                      ++.+|||+|||+|.++..++..+.  +++|+|+++.+++.++++.....                   ++++++||+|++
T Consensus        30 ~~~~vLdiG~G~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~  107 (235)
T 3sm3_A           30 EDDEILDIGCGSGKISLELASKGY--SVTGIDINSEAIRLAETAARSPGLNQKTGGKAEFKVENASSLSFHDSSFDFAVM  107 (235)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHTTC--EEEEEESCHHHHHHHHHHTTCCSCCSSSSCEEEEEECCTTSCCSCTTCEEEEEE
T ss_pred             CCCeEEEECCCCCHHHHHHHhCCC--eEEEEECCHHHHHHHHHHHHhcCCccccCcceEEEEecccccCCCCCceeEEEE
Confidence            478999999999999999999865  99999999999999998764311                   355789999999


Q ss_pred             CccccCCCCHH---HHHHHHHHcccCCcEEEEEEeccCCCCCchHHHHHHHHHhhhh----------------cCccCCC
Q 019861          238 GAAIHCWSSPS---TGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQI----------------SGSYTFL  298 (334)
Q Consensus       238 ~~vl~h~~d~~---~~L~~i~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~  298 (334)
                      ..+++|++++.   .+|+++.++|+|||++++.++.......  .+.......+...                ..+.+++
T Consensus       108 ~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  185 (235)
T 3sm3_A          108 QAFLTSVPDPKERSRIIKEVFRVLKPGAYLYLVEFGQNWHLK--LYRKRYLHDFPITKEEGSFLARDPETGETEFIAHHF  185 (235)
T ss_dssp             ESCGGGCCCHHHHHHHHHHHHHHEEEEEEEEEEEEBCCTTSH--HHHHHHHHHHHHHCSTTEEEEECTTTCCEEEEEECB
T ss_pred             cchhhcCCCHHHHHHHHHHHHHHcCCCeEEEEEECCcchhHH--HHHHHhhhhccchhhhcceEecccccCCcceeeEeC
Confidence            99999999998   8999999999999999999987643211  1111111111110                1134678


Q ss_pred             CHHHHHHHHHhCCCcEEEEe
Q 019861          299 SEREIEDLCRACGLVDFKCT  318 (334)
Q Consensus       299 t~~~l~~ll~~~Gf~~v~~~  318 (334)
                      +.+++.++++++||++++..
T Consensus       186 ~~~~l~~ll~~aGf~~~~~~  205 (235)
T 3sm3_A          186 TEKELVFLLTDCRFEIDYFR  205 (235)
T ss_dssp             CHHHHHHHHHTTTEEEEEEE
T ss_pred             CHHHHHHHHHHcCCEEEEEE
Confidence            99999999999999998844

>1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43

Probab=99.78  E-value=6.5e-18  Score=148.14  Aligned_cols=153  Identities=14%  Similarity=0.140  Sum_probs=112.9

Q ss_pred             CCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCC-------------CCCCCCceEEEeCc-ccc
Q 019861          177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES-------------NFPKDSIDAVHAGA-AIH  242 (334)
Q Consensus       177 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~-------------~~~~~~fD~V~~~~-vl~  242 (334)
                      ++.+|||+|||+|.++..+++.+.  +++|+|+++.+++.++++.....             +++ ++||+|++.. +++
T Consensus        37 ~~~~vLdiG~G~G~~~~~l~~~~~--~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~-~~fD~v~~~~~~l~  113 (246)
T 1y8c_A           37 VFDDYLDLACGTGNLTENLCPKFK--NTWAVDLSQEMLSEAENKFRSQGLKPRLACQDISNLNIN-RKFDLITCCLDSTN  113 (246)
T ss_dssp             CTTEEEEETCTTSTTHHHHGGGSS--EEEEECSCHHHHHHHHHHHHHTTCCCEEECCCGGGCCCS-CCEEEEEECTTGGG
T ss_pred             CCCeEEEeCCCCCHHHHHHHHCCC--cEEEEECCHHHHHHHHHHHhhcCCCeEEEecccccCCcc-CCceEEEEcCcccc
Confidence            578999999999999999999875  99999999999999998765321             233 7899999998 999


Q ss_pred             CC---CCHHHHHHHHHHcccCCcEEEEEEeccCCCCCchHHH---------HHHHHHh----------------------
Q 019861          243 CW---SSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFS---------RLLRQNM----------------------  288 (334)
Q Consensus       243 h~---~d~~~~L~~i~r~LkpgG~lii~~~~~~~~~~~~~~~---------~~~~~~~----------------------  288 (334)
                      |+   .++..+|++++++|+|||++++..++........+..         ...+...                      
T Consensus       114 ~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  193 (246)
T 1y8c_A          114 YIIDSDDLKKYFKAVSNHLKEGGVFIFDINSYYKLSQVLGNNDFNYDDDEVFYYWENQFEDDLVSMYISFFVRDGEFYKR  193 (246)
T ss_dssp             GCCSHHHHHHHHHHHHTTEEEEEEEEEEEECHHHHHTTTTTCCEEEEETTEEEEEEEEEETTEEEEEEEEEEECSSSEEE
T ss_pred             ccCCHHHHHHHHHHHHHhcCCCcEEEEEecCHHHHHhhcCcceEEecCCcEEEEEecccCCceEEEEEEEEEecCCcccc
Confidence            99   4567899999999999999999877642100000000         0000000                      


Q ss_pred             hhhcCccCCCCHHHHHHHHHhCCCcEEEEeec---------CcEEEEEEEcCC
Q 019861          289 MQISGSYTFLSEREIEDLCRACGLVDFKCTRN---------RGFVMFTATKPS  332 (334)
Q Consensus       289 ~~~~~~~~~~t~~~l~~ll~~~Gf~~v~~~~~---------g~~~~~~a~K~~  332 (334)
                      .....+.++++.+++.++|+++||++++....         ....+++++|+.
T Consensus       194 ~~~~~~~~~~~~~~l~~ll~~aGf~~~~~~~~~~~~~~~~~~~~~~~varK~~  246 (246)
T 1y8c_A          194 FDEEHEERAYKEEDIEKYLKHGQLNILDKVDCYSNKKVEKFTERITYLVKLGG  246 (246)
T ss_dssp             EEEEEEEECCCHHHHHHHHHHTTEEEEEEEESSSSCBCCTTCSEEEEEEEECC
T ss_pred             cEEEEEEEcCCHHHHHHHHHHCCCeEEEEEcccccCcCCCCceeEEEEEEecC
Confidence            00012357889999999999999999886532         356788898873

>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A

Probab=99.78  E-value=2.3e-18  Score=148.87  Aligned_cols=160  Identities=16%  Similarity=0.108  Sum_probs=114.1

Q ss_pred             HHHHcccCCCCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcC-------------------CCC
Q 019861          167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQE-------------------SNF  227 (334)
Q Consensus       167 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~-------------------~~~  227 (334)
                      +.+.+.+...++.+|||||||+|.++..+++.++..+++|+|+|+.+++.+++++...                   .++
T Consensus        19 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~   98 (219)
T 3jwg_A           19 GTVVAVLKSVNAKKVIDLGCGEGNLLSLLLKDKSFEQITGVDVSYSVLERAKDRLKIDRLPEMQRKRISLFQSSLVYRDK   98 (219)
T ss_dssp             HHHHHHHHHTTCCEEEEETCTTCHHHHHHHTSTTCCEEEEEESCHHHHHHHHHHHTGGGSCHHHHTTEEEEECCSSSCCG
T ss_pred             HHHHHHHhhcCCCEEEEecCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHhhccccccCcceEEEeCccccccc
Confidence            3444444445678999999999999999999886679999999999999999876421                   123


Q ss_pred             CCCCceEEEeCccccCCCCH--HHHHHHHHHcccCCcEEEEEEeccCCCCCchHHHHHHHHHhhhhcCccCCCCHHHHH-
Q 019861          228 PKDSIDAVHAGAAIHCWSSP--STGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIE-  304 (334)
Q Consensus       228 ~~~~fD~V~~~~vl~h~~d~--~~~L~~i~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~l~-  304 (334)
                      ++++||+|++..+++|++++  ..+|+++.++|+|||. ++.+++......... .   .........|...++.+++. 
T Consensus        99 ~~~~fD~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~-~i~~~~~~~~~~~~~-~---~~~~~~~~~~~~~~~~~~l~~  173 (219)
T 3jwg_A           99 RFSGYDAATVIEVIEHLDENRLQAFEKVLFEFTRPQTV-IVSTPNKEYNFHYGN-L---FEGNLRHRDHRFEWTRKEFQT  173 (219)
T ss_dssp             GGTTCSEEEEESCGGGCCHHHHHHHHHHHHTTTCCSEE-EEEEEBGGGGGCCCC-T--------GGGCCTTSBCHHHHHH
T ss_pred             ccCCCCEEEEHHHHHhCCHHHHHHHHHHHHHhhCCCEE-EEEccchhhhhhhcc-c---CcccccccCceeeecHHHHHH
Confidence            45789999999999999977  6899999999999994 455555422101000 0   01111224466778999999 


Q ss_pred             ---HHHHhCCCcEEEEe-------ecCcEEEEEEEcC
Q 019861          305 ---DLCRACGLVDFKCT-------RNRGFVMFTATKP  331 (334)
Q Consensus       305 ---~ll~~~Gf~~v~~~-------~~g~~~~~~a~K~  331 (334)
                         ++++++||++....       .+....+.+.+|.
T Consensus       174 ~~~~l~~~~Gf~v~~~~~g~~~~~~g~~~qi~~~~~~  210 (219)
T 3jwg_A          174 WAVKVAEKYGYSVRFLQIGEIDDEFGSPTQMGVFTLG  210 (219)
T ss_dssp             HHHHHHHHHTEEEEEEEESCCCTTSCCSEEEEEEEEC
T ss_pred             HHHHHHHHCCcEEEEEecCCccccCCCCeEEEEEecc
Confidence               88999999876542       2234566666664

>2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str}

Probab=99.78  E-value=3.6e-18  Score=151.26  Aligned_cols=146  Identities=11%  Similarity=0.026  Sum_probs=109.7

Q ss_pred             HHHcccCCCCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcC---------CCCCCCCceEEEeC
Q 019861          168 LMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQE---------SNFPKDSIDAVHAG  238 (334)
Q Consensus       168 ~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~---------~~~~~~~fD~V~~~  238 (334)
                      .+...+...++.+|||||||+|.++..+++..+..+++|+|+++.+++.++++....         .+ ++++||+|++.
T Consensus        24 ~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~d~~~~~-~~~~fD~v~~~  102 (259)
T 2p35_A           24 DLLAQVPLERVLNGYDLGCGPGNSTELLTDRYGVNVITGIDSDDDMLEKAADRLPNTNFGKADLATWK-PAQKADLLYAN  102 (259)
T ss_dssp             HHHTTCCCSCCSSEEEETCTTTHHHHHHHHHHCTTSEEEEESCHHHHHHHHHHSTTSEEEECCTTTCC-CSSCEEEEEEE
T ss_pred             HHHHhcCCCCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhCCCcEEEECChhhcC-ccCCcCEEEEe
Confidence            455556666788999999999999999999855569999999999999999873211         12 56789999999


Q ss_pred             ccccCCCCHHHHHHHHHHcccCCcEEEEEEeccCCCCCchHHHHHHHHH--hhhh-----cCccCCCCHHHHHHHHHhCC
Q 019861          239 AAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQN--MMQI-----SGSYTFLSEREIEDLCRACG  311 (334)
Q Consensus       239 ~vl~h~~d~~~~L~~i~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~--~~~~-----~~~~~~~t~~~l~~ll~~~G  311 (334)
                      .+++|++++..+|++++++|+|||++++.+++.... .....+......  +...     ..+..+++.+++.++|+++|
T Consensus       103 ~~l~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aG  181 (259)
T 2p35_A          103 AVFQWVPDHLAVLSQLMDQLESGGVLAVQMPDNLQE-PTHIAMHETADGGPWKDAFSGGGLRRKPLPPPSDYFNALSPKS  181 (259)
T ss_dssp             SCGGGSTTHHHHHHHHGGGEEEEEEEEEEEECCTTS-HHHHHHHHHHHHSTTGGGC-------CCCCCHHHHHHHHGGGE
T ss_pred             CchhhCCCHHHHHHHHHHhcCCCeEEEEEeCCCCCc-HHHHHHHHHhcCcchHHHhccccccccCCCCHHHHHHHHHhcC
Confidence            999999999999999999999999999999864321 111111111111  1110     22567899999999999999


Q ss_pred             CcEE
Q 019861          312 LVDF  315 (334)
Q Consensus       312 f~~v  315 (334)
                      |++.
T Consensus       182 f~v~  185 (259)
T 2p35_A          182 SRVD  185 (259)
T ss_dssp             EEEE
T ss_pred             CceE
Confidence            9743

>3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A*

Probab=99.78  E-value=6e-18  Score=153.71  Aligned_cols=154  Identities=14%  Similarity=0.094  Sum_probs=116.0

Q ss_pred             HHHHHcccCCCCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCC-------------CCCCCCc
Q 019861          166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES-------------NFPKDSI  232 (334)
Q Consensus       166 ~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~-------------~~~~~~f  232 (334)
                      .+.+...+...++.+|||||||+|.++..+++..+ .+|+|+|+|+.+++.++++.....             .+ +++|
T Consensus        61 ~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~-~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~~~f  138 (302)
T 3hem_A           61 RKLALDKLNLEPGMTLLDIGCGWGSTMRHAVAEYD-VNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWEEF-DEPV  138 (302)
T ss_dssp             HHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHHHC-CEEEEEECCHHHHHHHHHHHHHSCCSSCEEEEECCGGGC-CCCC
T ss_pred             HHHHHHHcCCCCcCEEEEeeccCcHHHHHHHHhCC-CEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECCHHHc-CCCc
Confidence            34566666777788999999999999999998832 599999999999999998865422             23 6899


Q ss_pred             eEEEeCccccCCCCH---------HHHHHHHHHcccCCcEEEEEEeccCCCCCchH-------HHHHHHHHhhh-hcCcc
Q 019861          233 DAVHAGAAIHCWSSP---------STGVAEISRVLRPGGVFVGTTYIVDGPFNLIP-------FSRLLRQNMMQ-ISGSY  295 (334)
Q Consensus       233 D~V~~~~vl~h~~d~---------~~~L~~i~r~LkpgG~lii~~~~~~~~~~~~~-------~~~~~~~~~~~-~~~~~  295 (334)
                      |+|++..+++|++||         ..+++++.++|||||++++.++..........       ....+..++.. .....
T Consensus       139 D~v~~~~~~~~~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~  218 (302)
T 3hem_A          139 DRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHTITIPDKEEAQELGLTSPMSLLRFIKFILTEIFPGG  218 (302)
T ss_dssp             SEEEEESCGGGTTCCSSCCCTTHHHHHHHHHHHSSCTTCEEEEEEEECCCHHHHHHHTCCCCHHHHHHHHHHHHHTCTTC
T ss_pred             cEEEEcchHHhcCccccccchhHHHHHHHHHHHhcCCCcEEEEEEEeccCccchhhccccccccccchHHHHHHhcCCCC
Confidence            999999999999887         79999999999999999999987653210000       00000111111 12234


Q ss_pred             CCCCHHHHHHHHHhCCCcEEEEeecC
Q 019861          296 TFLSEREIEDLCRACGLVDFKCTRNR  321 (334)
Q Consensus       296 ~~~t~~~l~~ll~~~Gf~~v~~~~~g  321 (334)
                      ...+.+++.++++++||++++....+
T Consensus       219 ~~~s~~~~~~~l~~aGf~~~~~~~~~  244 (302)
T 3hem_A          219 RLPRISQVDYYSSNAGWKVERYHRIG  244 (302)
T ss_dssp             CCCCHHHHHHHHHHHTCEEEEEEECG
T ss_pred             CCCCHHHHHHHHHhCCcEEEEEEeCc
Confidence            67789999999999999998876554

>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33

Probab=99.77  E-value=1.9e-18  Score=154.22  Aligned_cols=168  Identities=21%  Similarity=0.320  Sum_probs=115.9

Q ss_pred             ceeCCCCCCCccccCCCCcccccccCCcccccccccccccccCcccccccCCCCC--cCcccccchhhccCchhHHHHHH
Q 019861           71 VLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSGVGTHFDMTAASGSKD--YGELMSPATEFFRMPFMSFIYER  148 (334)
Q Consensus        71 ~l~CPiC~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~~~~~~~~~~~~~~~~~~--y~~~~~~~~~~~~~~~~~~~~~~  148 (334)
                      .+.||.|+..+....           ..++|.+|+.+.....+|++++.......  .......             +. 
T Consensus         2 ~~~Cp~C~~~~~~~~-----------~~~~C~~~~~~~~~~~Gy~~~~~~~~~~~~~~~~~~~~-------------~~-   56 (269)
T 1p91_A            2 SFSCPLCHQPLSREK-----------NSYICPQRHQFDMAKEGYVNLLPVQHKRSRDPGDSAEM-------------MQ-   56 (269)
T ss_dssp             CBBCTTTCCBCEEET-----------TEEECTTCCEEEBCTTSCEECSCSSSSCSCCCSSSHHH-------------HH-
T ss_pred             cccCCCCCccceeCC-----------CEEECCCCCcCCcCCCEEEEeecccccCCCCCCCCHHH-------------HH-
Confidence            378999998765533           57999999999988999998876533211  1111000             00 


Q ss_pred             hHHHhhHhcCCCCc--HHHHHHHHcccCCCCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhc---
Q 019861          149 GWRQNFVWGGFPGP--EKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQ---  223 (334)
Q Consensus       149 ~w~~~~~~~~~~~~--~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~---  223 (334)
                       .+..+...++..+  ....+.+...+. .++.+|||||||+|.++..+++..+..+++|+|+++.+++.++++...   
T Consensus        57 -~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~  134 (269)
T 1p91_A           57 -ARRAFLDAGHYQPLRDAIVAQLRERLD-DKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRYPQVTF  134 (269)
T ss_dssp             -HHHHHHTTTTTHHHHHHHHHHHHHHSC-TTCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHCTTSEE
T ss_pred             -HHHHHHhCCCcHHHHHHHHHHHHHhcC-CCCCEEEEECCCCCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHhCCCcEE
Confidence             0111222222211  122333444332 357899999999999999999985456999999999999999987532   


Q ss_pred             ------CCCCCCCCceEEEeCccccCCCCHHHHHHHHHHcccCCcEEEEEEeccC
Q 019861          224 ------ESNFPKDSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVD  272 (334)
Q Consensus       224 ------~~~~~~~~fD~V~~~~vl~h~~d~~~~L~~i~r~LkpgG~lii~~~~~~  272 (334)
                            ..++++++||+|++..+..       +++++.++|+|||++++.+++.+
T Consensus       135 ~~~d~~~~~~~~~~fD~v~~~~~~~-------~l~~~~~~L~pgG~l~~~~~~~~  182 (269)
T 1p91_A          135 CVASSHRLPFSDTSMDAIIRIYAPC-------KAEELARVVKPGGWVITATPGPR  182 (269)
T ss_dssp             EECCTTSCSBCTTCEEEEEEESCCC-------CHHHHHHHEEEEEEEEEEEECTT
T ss_pred             EEcchhhCCCCCCceeEEEEeCChh-------hHHHHHHhcCCCcEEEEEEcCHH
Confidence                  1245678999999977633       48999999999999999998864

>3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti}

Probab=99.77  E-value=4.4e-18  Score=149.20  Aligned_cols=151  Identities=24%  Similarity=0.274  Sum_probs=111.1

Q ss_pred             HHHcccCCCCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcC-----------CCCCCCCceEEE
Q 019861          168 LMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQE-----------SNFPKDSIDAVH  236 (334)
Q Consensus       168 ~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~-----------~~~~~~~fD~V~  236 (334)
                      .+...+...++.+|||||||+|.++..+++.+. .+++|+|+++.+++.++++....           .++++++||+|+
T Consensus        34 ~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~  112 (243)
T 3bkw_A           34 ALRAMLPEVGGLRIVDLGCGFGWFCRWAHEHGA-SYVLGLDLSEKMLARARAAGPDTGITYERADLDKLHLPQDSFDLAY  112 (243)
T ss_dssp             HHHHHSCCCTTCEEEEETCTTCHHHHHHHHTTC-SEEEEEESCHHHHHHHHHTSCSSSEEEEECCGGGCCCCTTCEEEEE
T ss_pred             HHHHhccccCCCEEEEEcCcCCHHHHHHHHCCC-CeEEEEcCCHHHHHHHHHhcccCCceEEEcChhhccCCCCCceEEE
Confidence            455566666788999999999999999998853 48999999999999999875421           245678999999


Q ss_pred             eCccccCCCCHHHHHHHHHHcccCCcEEEEEEeccCCCCCch-------------HHHHHH-----HHHhhhhcCccCCC
Q 019861          237 AGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLI-------------PFSRLL-----RQNMMQISGSYTFL  298 (334)
Q Consensus       237 ~~~vl~h~~d~~~~L~~i~r~LkpgG~lii~~~~~~~~~~~~-------------~~~~~~-----~~~~~~~~~~~~~~  298 (334)
                      +..+++|++++..+|++++++|+|||++++.+++........             +.....     ...+.....+...+
T Consensus       113 ~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  192 (243)
T 3bkw_A          113 SSLALHYVEDVARLFRTVHQALSPGGHFVFSTEHPIYMAPARPGWAIDAEGRRTWPIDRYLVEGPRKTDWLAKGVVKHHR  192 (243)
T ss_dssp             EESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEECHHHHCCSSCSCEECTTSCEEEEECCTTCCEEECTTHHHHSCCEEEC
T ss_pred             EeccccccchHHHHHHHHHHhcCcCcEEEEEeCCcccccCcCcceeecCCCceEEeecccccccceeeeeccCceEEEec
Confidence            999999999999999999999999999999887531000000             000000     00000011233447


Q ss_pred             CHHHHHHHHHhCCCcEEEEee
Q 019861          299 SEREIEDLCRACGLVDFKCTR  319 (334)
Q Consensus       299 t~~~l~~ll~~~Gf~~v~~~~  319 (334)
                      +.+++.++|+++||++++...
T Consensus       193 t~~~~~~~l~~aGF~~~~~~~  213 (243)
T 3bkw_A          193 TVGTTLNALIRSGFAIEHVEE  213 (243)
T ss_dssp             CHHHHHHHHHHTTCEEEEEEE
T ss_pred             cHHHHHHHHHHcCCEeeeecc
Confidence            999999999999999988553

>3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A*

Probab=99.77  E-value=2e-17  Score=154.61  Aligned_cols=159  Identities=11%  Similarity=0.090  Sum_probs=122.7

Q ss_pred             HHHHcccCCCCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCC--------------CCCCCCc
Q 019861          167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES--------------NFPKDSI  232 (334)
Q Consensus       167 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~--------------~~~~~~f  232 (334)
                      ..+...++..+..+|||||||+|.++..+++.++..+++++|+ +.+++.+++++....              +++. .|
T Consensus       192 ~~l~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~p~-~~  269 (369)
T 3gwz_A          192 GQVAAAYDFSGAATAVDIGGGRGSLMAAVLDAFPGLRGTLLER-PPVAEEARELLTGRGLADRCEILPGDFFETIPD-GA  269 (369)
T ss_dssp             HHHHHHSCCTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTTCCCS-SC
T ss_pred             HHHHHhCCCccCcEEEEeCCCccHHHHHHHHHCCCCeEEEEcC-HHHHHHHHHhhhhcCcCCceEEeccCCCCCCCC-Cc
Confidence            3455555555678999999999999999999988889999999 999999998764321              3344 79


Q ss_pred             eEEEeCccccCCCCHH--HHHHHHHHcccCCcEEEEEEeccCCCCCchHHHHHHHHHhhhhcCccCCCCHHHHHHHHHhC
Q 019861          233 DAVHAGAAIHCWSSPS--TGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLCRAC  310 (334)
Q Consensus       233 D~V~~~~vl~h~~d~~--~~L~~i~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~l~~ll~~~  310 (334)
                      |+|++.++|||++++.  .+|++++++|+|||++++.++..+....  +........+.. ..+...++.++|.++++++
T Consensus       270 D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~--~~~~~~d~~~~~-~~~g~~~t~~e~~~ll~~a  346 (369)
T 3gwz_A          270 DVYLIKHVLHDWDDDDVVRILRRIATAMKPDSRLLVIDNLIDERPA--ASTLFVDLLLLV-LVGGAERSESEFAALLEKS  346 (369)
T ss_dssp             SEEEEESCGGGSCHHHHHHHHHHHHTTCCTTCEEEEEEEBCCSSCC--HHHHHHHHHHHH-HHSCCCBCHHHHHHHHHTT
T ss_pred             eEEEhhhhhccCCHHHHHHHHHHHHHHcCCCCEEEEEEeccCCCCC--CchhHhhHHHHh-hcCCccCCHHHHHHHHHHC
Confidence            9999999999999886  7999999999999999999988754322  111111111111 1245678999999999999


Q ss_pred             CCcEEEEee--cCcEEEEEEEc
Q 019861          311 GLVDFKCTR--NRGFVMFTATK  330 (334)
Q Consensus       311 Gf~~v~~~~--~g~~~~~~a~K  330 (334)
                      ||++++...  .+.+.++.++|
T Consensus       347 Gf~~~~~~~~~~~~~svie~~~  368 (369)
T 3gwz_A          347 GLRVERSLPCGAGPVRIVEIRR  368 (369)
T ss_dssp             TEEEEEEEECSSSSEEEEEEEE
T ss_pred             CCeEEEEEECCCCCcEEEEEEe
Confidence            999999776  56777777765

>1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42

Probab=99.76  E-value=3e-18  Score=151.36  Aligned_cols=140  Identities=14%  Similarity=0.087  Sum_probs=110.3

Q ss_pred             HHHcccCCCCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcC------------CCCCCCCceEE
Q 019861          168 LMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQE------------SNFPKDSIDAV  235 (334)
Q Consensus       168 ~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~------------~~~~~~~fD~V  235 (334)
                      .+...+...++.+|||||||+|.++..++..+ ..+++|+|+++.+++.++++....            .++++++||+|
T Consensus        84 ~~l~~l~~~~~~~vLDiG~G~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v  162 (254)
T 1xtp_A           84 NFIASLPGHGTSRALDCGAGIGRITKNLLTKL-YATTDLLEPVKHMLEEAKRELAGMPVGKFILASMETATLPPNTYDLI  162 (254)
T ss_dssp             HHHHTSTTCCCSEEEEETCTTTHHHHHTHHHH-CSEEEEEESCHHHHHHHHHHTTTSSEEEEEESCGGGCCCCSSCEEEE
T ss_pred             HHHHhhcccCCCEEEEECCCcCHHHHHHHHhh-cCEEEEEeCCHHHHHHHHHHhccCCceEEEEccHHHCCCCCCCeEEE
Confidence            34445555568899999999999999998886 458999999999999999886421            24567899999


Q ss_pred             EeCccccCCC--CHHHHHHHHHHcccCCcEEEEEEeccCCCCCchHHHHHHHHHhhhhcCccCCCCHHHHHHHHHhCCCc
Q 019861          236 HAGAAIHCWS--SPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLCRACGLV  313 (334)
Q Consensus       236 ~~~~vl~h~~--d~~~~L~~i~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~l~~ll~~~Gf~  313 (334)
                      ++..+++|++  ++..+|+++.++|+|||++++.++........           .....+..+++.+++.++++++||+
T Consensus       163 ~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~l~~aGf~  231 (254)
T 1xtp_A          163 VIQWTAIYLTDADFVKFFKHCQQALTPNGYIFFKENCSTGDRFL-----------VDKEDSSLTRSDIHYKRLFNESGVR  231 (254)
T ss_dssp             EEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEBC--CCEE-----------EETTTTEEEBCHHHHHHHHHHHTCC
T ss_pred             EEcchhhhCCHHHHHHHHHHHHHhcCCCeEEEEEecCCCcccce-----------ecccCCcccCCHHHHHHHHHHCCCE
Confidence            9999999995  47899999999999999999999754322110           1112244567999999999999999


Q ss_pred             EEEEee
Q 019861          314 DFKCTR  319 (334)
Q Consensus       314 ~v~~~~  319 (334)
                      +++...
T Consensus       232 ~~~~~~  237 (254)
T 1xtp_A          232 VVKEAF  237 (254)
T ss_dssp             EEEEEE
T ss_pred             EEEeee
Confidence            988654

>1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41

Probab=99.76  E-value=1.8e-17  Score=143.43  Aligned_cols=143  Identities=22%  Similarity=0.311  Sum_probs=110.8

Q ss_pred             CCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHh-------cCCCCCCCCceEEEeCccccCCCCHHHH
Q 019861          178 GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQ-------QESNFPKDSIDAVHAGAAIHCWSSPSTG  250 (334)
Q Consensus       178 ~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~-------~~~~~~~~~fD~V~~~~vl~h~~d~~~~  250 (334)
                      +.+|||||||+|.++..++..      +|+|+++.+++.++++-.       ...++++++||+|++..+++|++++..+
T Consensus        48 ~~~vLDiG~G~G~~~~~l~~~------~~vD~s~~~~~~a~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~~~  121 (219)
T 1vlm_A           48 EGRGVEIGVGTGRFAVPLKIK------IGVEPSERMAEIARKRGVFVLKGTAENLPLKDESFDFALMVTTICFVDDPERA  121 (219)
T ss_dssp             SSCEEEETCTTSTTHHHHTCC------EEEESCHHHHHHHHHTTCEEEECBTTBCCSCTTCEEEEEEESCGGGSSCHHHH
T ss_pred             CCcEEEeCCCCCHHHHHHHHH------hccCCCHHHHHHHHhcCCEEEEcccccCCCCCCCeeEEEEcchHhhccCHHHH
Confidence            689999999999999888754      999999999999987510       1124567899999999999999999999


Q ss_pred             HHHHHHcccCCcEEEEEEeccCCCCCchHHHHHHHHHh--hhhcCccCCCCHHHHHHHHHhCCCcEEEEeec--------
Q 019861          251 VAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNM--MQISGSYTFLSEREIEDLCRACGLVDFKCTRN--------  320 (334)
Q Consensus       251 L~~i~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~t~~~l~~ll~~~Gf~~v~~~~~--------  320 (334)
                      |+++.++|+|||.+++.+++...     .+........  .....+.++++.+++.++++++||++++....        
T Consensus       122 l~~~~~~L~pgG~l~i~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gf~~~~~~~~~~~~p~~~  196 (219)
T 1vlm_A          122 LKEAYRILKKGGYLIVGIVDRES-----FLGREYEKNKEKSVFYKNARFFSTEELMDLMRKAGFEEFKVVQTLFKHPSEL  196 (219)
T ss_dssp             HHHHHHHEEEEEEEEEEEECSSS-----HHHHHHHHTTTC-CCSTTCCCCCHHHHHHHHHHTTCEEEEEEEECCSCGGGC
T ss_pred             HHHHHHHcCCCcEEEEEEeCCcc-----HHHHHHHHHhcCcchhcccccCCHHHHHHHHHHCCCeEEEEecccCCCCCcc
Confidence            99999999999999999987642     2211111110  11224567899999999999999998874422        


Q ss_pred             ------------CcEEEEEEEcC
Q 019861          321 ------------RGFVMFTATKP  331 (334)
Q Consensus       321 ------------g~~~~~~a~K~  331 (334)
                                  +.+++++|+|+
T Consensus       197 ~~~~~~~~~~~~~~~~~i~a~K~  219 (219)
T 1vlm_A          197 SEIEPVKEGYGEGAFVVIRGTKK  219 (219)
T ss_dssp             SSCCCCEESSSSSSEEEEEEECC
T ss_pred             ccchhhhcCCCCCeEEEEEecCC
Confidence                        14888888874

>1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A*

Probab=99.76  E-value=2.6e-17  Score=153.21  Aligned_cols=162  Identities=17%  Similarity=0.141  Sum_probs=121.3

Q ss_pred             HHHHcccCCCCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCC-------------CCCCCCce
Q 019861          167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES-------------NFPKDSID  233 (334)
Q Consensus       167 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~-------------~~~~~~fD  233 (334)
                      +.+.+.+...++.+|||||||+|.++..+++..+..+++++|+ +.+++.+++++....             ..+-..+|
T Consensus       180 ~~l~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~D  258 (359)
T 1x19_A          180 QLLLEEAKLDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKESYPEAD  258 (359)
T ss_dssp             HHHHHHCCCTTCCEEEEESCTTCHHHHHHHHHCTTCEEEEEEC-GGGHHHHHHHHHHTTCTTTEEEEECCTTTSCCCCCS
T ss_pred             HHHHHhcCCCCCCEEEEECCcccHHHHHHHHHCCCCeEEEEec-HHHHHHHHHHHHhcCCCCCEEEEeCccccCCCCCCC
Confidence            3455555556678999999999999999999987789999999 999999998754321             11223349


Q ss_pred             EEEeCccccCCCC--HHHHHHHHHHcccCCcEEEEEEeccCCCCCchHHHHHHHHHhhh---hcCccCCCCHHHHHHHHH
Q 019861          234 AVHAGAAIHCWSS--PSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQ---ISGSYTFLSEREIEDLCR  308 (334)
Q Consensus       234 ~V~~~~vl~h~~d--~~~~L~~i~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~t~~~l~~ll~  308 (334)
                      +|++..++||+++  ...+|++++++|+|||++++.++..+..  ..+........+..   ......+++.++|.++++
T Consensus       259 ~v~~~~vlh~~~d~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~--~~~~~~~~~~~~~~~~~g~~~~~~~t~~e~~~ll~  336 (359)
T 1x19_A          259 AVLFCRILYSANEQLSTIMCKKAFDAMRSGGRLLILDMVIDDP--ENPNFDYLSHYILGAGMPFSVLGFKEQARYKEILE  336 (359)
T ss_dssp             EEEEESCGGGSCHHHHHHHHHHHHTTCCTTCEEEEEEECCCCT--TSCCHHHHHHHGGGGGSSCCCCCCCCGGGHHHHHH
T ss_pred             EEEEechhccCCHHHHHHHHHHHHHhcCCCCEEEEEecccCCC--CCchHHHHHHHHHhcCCCCcccCCCCHHHHHHHHH
Confidence            9999999999998  6789999999999999999988776433  11222222111111   111234589999999999


Q ss_pred             hCCCcEEEEeecCcEEEEEEEcC
Q 019861          309 ACGLVDFKCTRNRGFVMFTATKP  331 (334)
Q Consensus       309 ~~Gf~~v~~~~~g~~~~~~a~K~  331 (334)
                      ++||++++....+...++.++||
T Consensus       337 ~aGf~~v~~~~~~~~~vi~a~kp  359 (359)
T 1x19_A          337 SLGYKDVTMVRKYDHLLVQAVKP  359 (359)
T ss_dssp             HHTCEEEEEEEETTEEEEEEECC
T ss_pred             HCCCceEEEEecCCceEEEEeCC
Confidence            99999988765557788888886

>3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A

Probab=99.76  E-value=2e-17  Score=149.07  Aligned_cols=147  Identities=16%  Similarity=0.144  Sum_probs=109.8

Q ss_pred             cCCCCCCcEEEECCCcCHHHHHHHHcCC-CCeEEEEeCCHHHHHHHHHHHhcCC-------------CCCCCCceEEEeC
Q 019861          173 LKPVLGGNIIDASCGSGLFSRIFAKSGL-FSLVVALDYSENMLKQCYEFVQQES-------------NFPKDSIDAVHAG  238 (334)
Q Consensus       173 l~~~~~~~vLDiGcG~G~~~~~l~~~~~-~~~v~giD~s~~~~~~a~~~~~~~~-------------~~~~~~fD~V~~~  238 (334)
                      ....++.+|||||||+|.++..+++..+ ..+++|+|+++.+++.++++.....             ++ +++||+|++.
T Consensus        18 ~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~-~~~fD~v~~~   96 (284)
T 3gu3_A           18 WKITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPYDSEFLEGDATEIEL-NDKYDIAICH   96 (284)
T ss_dssp             SCCCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEESCHHHHHHHHHHHHSSSSEEEEEESCTTTCCC-SSCEEEEEEE
T ss_pred             hccCCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHhcCCceEEEEcchhhcCc-CCCeeEEEEC
Confidence            3455688999999999999999999865 3699999999999999998865422             23 4689999999


Q ss_pred             ccccCCCCHHHHHHHHHHcccCCcEEEEEEecc-----CCC--CCchH-H--HHHHHHHhh--hhcCccCCCCHHHHHHH
Q 019861          239 AAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIV-----DGP--FNLIP-F--SRLLRQNMM--QISGSYTFLSEREIEDL  306 (334)
Q Consensus       239 ~vl~h~~d~~~~L~~i~r~LkpgG~lii~~~~~-----~~~--~~~~~-~--~~~~~~~~~--~~~~~~~~~t~~~l~~l  306 (334)
                      .+++|++++..+|++++++|+|||++++.+++.     ...  ....+ .  ...+...+.  .......+.+.+++.++
T Consensus        97 ~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  176 (284)
T 3gu3_A           97 AFLLHMTTPETMLQKMIHSVKKGGKIICFEPHWISNMASYLLDGEKQSEFIQLGVLQKLFESDTQRNGKDGNIGMKIPIY  176 (284)
T ss_dssp             SCGGGCSSHHHHHHHHHHTEEEEEEEEEEECCHHHHHHSEEETTSCHHHHCCHHHHHHHHHHHHHHTCCCTTGGGTHHHH
T ss_pred             ChhhcCCCHHHHHHHHHHHcCCCCEEEEEecchhcccccceecCcchhhccchHHHHHHHHHHhhhhcccccHHHHHHHH
Confidence            999999999999999999999999999999872     100  00000 0  111111111  11223456677899999


Q ss_pred             HHhCCCcEEEEeec
Q 019861          307 CRACGLVDFKCTRN  320 (334)
Q Consensus       307 l~~~Gf~~v~~~~~  320 (334)
                      |+++||++++....
T Consensus       177 l~~aGF~~v~~~~~  190 (284)
T 3gu3_A          177 LSELGVKNIECRVS  190 (284)
T ss_dssp             HHHTTCEEEEEEEC
T ss_pred             HHHcCCCeEEEEEc
Confidence            99999999876443

>3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus}

Probab=99.76  E-value=1.6e-18  Score=150.30  Aligned_cols=146  Identities=16%  Similarity=0.222  Sum_probs=112.1

Q ss_pred             HHHcccCCCCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhc---------CCCCCCCCceEEEeC
Q 019861          168 LMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQ---------ESNFPKDSIDAVHAG  238 (334)
Q Consensus       168 ~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~---------~~~~~~~~fD~V~~~  238 (334)
                      .+.+.+. .++.+|||+|||+|.++..+++.+  .+++|+|+++.+++.++++...         ..++++++||+|++.
T Consensus        24 ~l~~~~~-~~~~~vLdiG~G~G~~~~~l~~~~--~~~~~~D~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~v~~~  100 (230)
T 3cc8_A           24 NLLKHIK-KEWKEVLDIGCSSGALGAAIKENG--TRVSGIEAFPEAAEQAKEKLDHVVLGDIETMDMPYEEEQFDCVIFG  100 (230)
T ss_dssp             HHHTTCC-TTCSEEEEETCTTSHHHHHHHTTT--CEEEEEESSHHHHHHHHTTSSEEEESCTTTCCCCSCTTCEEEEEEE
T ss_pred             HHHHHhc-cCCCcEEEeCCCCCHHHHHHHhcC--CeEEEEeCCHHHHHHHHHhCCcEEEcchhhcCCCCCCCccCEEEEC
Confidence            3445554 467899999999999999999885  5999999999999999876421         134567899999999


Q ss_pred             ccccCCCCHHHHHHHHHHcccCCcEEEEEEeccCCCCCchHHHHHHHHHhh------hhcCccCCCCHHHHHHHHHhCCC
Q 019861          239 AAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMM------QISGSYTFLSEREIEDLCRACGL  312 (334)
Q Consensus       239 ~vl~h~~d~~~~L~~i~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~t~~~l~~ll~~~Gf  312 (334)
                      .+++|++++..+|+++.++|+|||.+++.+++....   ..........+.      ....|.++++.+++.++++++||
T Consensus       101 ~~l~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf  177 (230)
T 3cc8_A          101 DVLEHLFDPWAVIEKVKPYIKQNGVILASIPNVSHI---SVLAPLLAGNWTYTEYGLLDKTHIRFFTFNEMLRMFLKAGY  177 (230)
T ss_dssp             SCGGGSSCHHHHHHHTGGGEEEEEEEEEEEECTTSH---HHHHHHHTTCCCCBSSSTTBTTCCCCCCHHHHHHHHHHTTE
T ss_pred             ChhhhcCCHHHHHHHHHHHcCCCCEEEEEeCCcchH---HHHHHHhcCCceeccCCCCCcceEEEecHHHHHHHHHHcCC
Confidence            999999999999999999999999999999886431   111111100000      01235678999999999999999


Q ss_pred             cEEEEee
Q 019861          313 VDFKCTR  319 (334)
Q Consensus       313 ~~v~~~~  319 (334)
                      ++++...
T Consensus       178 ~~~~~~~  184 (230)
T 3cc8_A          178 SISKVDR  184 (230)
T ss_dssp             EEEEEEE
T ss_pred             eEEEEEe
Confidence            9887543

>3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A*

Probab=99.76  E-value=4.6e-18  Score=151.22  Aligned_cols=161  Identities=19%  Similarity=0.197  Sum_probs=113.8

Q ss_pred             HHHHcccCCCCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcC---------CCCCCCCceEEEe
Q 019861          167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQE---------SNFPKDSIDAVHA  237 (334)
Q Consensus       167 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~---------~~~~~~~fD~V~~  237 (334)
                      +.+...++  ++.+|||||||+|.++..+++.+.  +++|+|+|+.+++.++++....         .++ +++||+|++
T Consensus        42 ~~l~~~~~--~~~~vLDiGcG~G~~~~~l~~~~~--~v~gvD~s~~~~~~a~~~~~~~~~~~~d~~~~~~-~~~fD~v~~  116 (263)
T 3pfg_A           42 ALVRRHSP--KAASLLDVACGTGMHLRHLADSFG--TVEGLELSADMLAIARRRNPDAVLHHGDMRDFSL-GRRFSAVTC  116 (263)
T ss_dssp             HHHHHHCT--TCCEEEEETCTTSHHHHHHTTTSS--EEEEEESCHHHHHHHHHHCTTSEEEECCTTTCCC-SCCEEEEEE
T ss_pred             HHHHhhCC--CCCcEEEeCCcCCHHHHHHHHcCC--eEEEEECCHHHHHHHHhhCCCCEEEECChHHCCc-cCCcCEEEE
Confidence            34444433  368999999999999999999876  9999999999999999875421         122 688999999


Q ss_pred             Cc-cccCCC---CHHHHHHHHHHcccCCcEEEEEEeccCCCCCchHH-----------HHHHHH------------H---
Q 019861          238 GA-AIHCWS---SPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPF-----------SRLLRQ------------N---  287 (334)
Q Consensus       238 ~~-vl~h~~---d~~~~L~~i~r~LkpgG~lii~~~~~~~~~~~~~~-----------~~~~~~------------~---  287 (334)
                      .. +++|++   +...+|++++++|+|||++++.+............           ...++.            .   
T Consensus       117 ~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  196 (263)
T 3pfg_A          117 MFSSIGHLAGQAELDAALERFAAHVLPDGVVVVEPWWFPENFTPGYVAAGTVEAGGTTVTRVSHSSREGEATRIEVHYLV  196 (263)
T ss_dssp             CTTGGGGSCHHHHHHHHHHHHHHTEEEEEEEEECCCCCTTTCCTTEEEEEEEEETTEEEEEEEEEEEETTEEEEEEEEEE
T ss_pred             cCchhhhcCCHHHHHHHHHHHHHhcCCCcEEEEEeccChhhccccccccceeccCCceeEEEEEEEecCcEEEEEEEEEE
Confidence            98 999997   44588999999999999999975433211000000           000000            0   


Q ss_pred             ------hh--hhcCccCCCCHHHHHHHHHhCCCcEEEEee-cCcEEEEEEEcCC
Q 019861          288 ------MM--QISGSYTFLSEREIEDLCRACGLVDFKCTR-NRGFVMFTATKPS  332 (334)
Q Consensus       288 ------~~--~~~~~~~~~t~~~l~~ll~~~Gf~~v~~~~-~g~~~~~~a~K~~  332 (334)
                            +.  ....+.++|+.+++.++|+++||++++... .+...+++++||.
T Consensus       197 ~~~~~~~~~~~~~~~~~~~t~~el~~ll~~aGF~v~~~~~~~~~~~~~va~K~a  250 (263)
T 3pfg_A          197 AGPDRGITHHEESHRITLFTREQYERAFTAAGLSVEFMPGGPSGRGLFTGLPGA  250 (263)
T ss_dssp             EETTTEEEEEEEEEEEECCCHHHHHHHHHHTTEEEEEESSTTTSSCEEEEEECC
T ss_pred             ecCCCcEEEEEEEEEEEeecHHHHHHHHHHCCCEEEEeeCCCCCceeEEEecCC
Confidence                  00  001135688999999999999999988643 2445678888874

>3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413}

Probab=99.76  E-value=2.7e-18  Score=152.80  Aligned_cols=146  Identities=22%  Similarity=0.255  Sum_probs=111.3

Q ss_pred             HHHHHHcccCCCCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHh--------cCCCCCCCCceEEE
Q 019861          165 EFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQ--------QESNFPKDSIDAVH  236 (334)
Q Consensus       165 ~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~--------~~~~~~~~~fD~V~  236 (334)
                      ..+.+.+.+...++.+|||||||+|.++..+++.+  .+|+|+|+|+.+++.++++..        ...++++++||+|+
T Consensus        22 ~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~--~~v~gvD~s~~~~~~a~~~~~~~~~~~d~~~~~~~~~~fD~v~   99 (261)
T 3ege_A           22 IVNAIINLLNLPKGSVIADIGAGTGGYSVALANQG--LFVYAVEPSIVMRQQAVVHPQVEWFTGYAENLALPDKSVDGVI   99 (261)
T ss_dssp             HHHHHHHHHCCCTTCEEEEETCTTSHHHHHHHTTT--CEEEEECSCHHHHHSSCCCTTEEEECCCTTSCCSCTTCBSEEE
T ss_pred             HHHHHHHHhCCCCCCEEEEEcCcccHHHHHHHhCC--CEEEEEeCCHHHHHHHHhccCCEEEECchhhCCCCCCCEeEEE
Confidence            44566666766678999999999999999999855  499999999999987765431        11256788999999


Q ss_pred             eCccccCCCCHHHHHHHHHHcccCCcEEEEEEeccCCCCCch--HHHHHHHHHhhhhcCccCCCCHHHHHHHHHhCCCcE
Q 019861          237 AGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLI--PFSRLLRQNMMQISGSYTFLSEREIEDLCRACGLVD  314 (334)
Q Consensus       237 ~~~vl~h~~d~~~~L~~i~r~LkpgG~lii~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~t~~~l~~ll~~~Gf~~  314 (334)
                      +.++++|++++..+|++++++|| ||++++.++.........  ........     ..+..+.+.+++. +|+++||++
T Consensus       100 ~~~~l~~~~~~~~~l~~~~~~Lk-gG~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~-~l~~aGF~~  172 (261)
T 3ege_A          100 SILAIHHFSHLEKSFQEMQRIIR-DGTIVLLTFDIRLAQRIWLYDYFPFLWE-----DALRFLPLDEQIN-LLQENTKRR  172 (261)
T ss_dssp             EESCGGGCSSHHHHHHHHHHHBC-SSCEEEEEECGGGCCCCGGGGTCHHHHH-----HHHTSCCHHHHHH-HHHHHHCSE
T ss_pred             EcchHhhccCHHHHHHHHHHHhC-CcEEEEEEcCCchhHHHHHHHHHHHHhh-----hhhhhCCCHHHHH-HHHHcCCCc
Confidence            99999999999999999999999 999999888754332111  11111111     1245677888999 999999988


Q ss_pred             EEEee
Q 019861          315 FKCTR  319 (334)
Q Consensus       315 v~~~~  319 (334)
                      ++...
T Consensus       173 v~~~~  177 (261)
T 3ege_A          173 VEAIP  177 (261)
T ss_dssp             EEEEE
T ss_pred             eeEEE
Confidence            87543

>3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A*

Probab=99.76  E-value=2.9e-17  Score=148.27  Aligned_cols=108  Identities=22%  Similarity=0.325  Sum_probs=91.2

Q ss_pred             cHHHHHHHHcccCCCCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcC-------------C---
Q 019861          162 PEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQE-------------S---  225 (334)
Q Consensus       162 ~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~-------------~---  225 (334)
                      .....+.+...+...++.+|||||||+|.++..+++.+.  +|+|+|+|+.+++.++++....             .   
T Consensus        42 ~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~--~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~d~~  119 (293)
T 3thr_A           42 TAEYKAWLLGLLRQHGCHRVLDVACGTGVDSIMLVEEGF--SVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWL  119 (293)
T ss_dssp             CHHHHHHHHHHHHHTTCCEEEETTCTTSHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGG
T ss_pred             HHHHHHHHHHHhcccCCCEEEEecCCCCHHHHHHHHCCC--eEEEEECCHHHHHHHHHhhhhcccccccceeeEeecChh
Confidence            344556666666555678999999999999999999976  9999999999999998764211             0   


Q ss_pred             --C---CCCCCceEEEeC-ccccCCCC-------HHHHHHHHHHcccCCcEEEEEEecc
Q 019861          226 --N---FPKDSIDAVHAG-AAIHCWSS-------PSTGVAEISRVLRPGGVFVGTTYIV  271 (334)
Q Consensus       226 --~---~~~~~fD~V~~~-~vl~h~~d-------~~~~L~~i~r~LkpgG~lii~~~~~  271 (334)
                        +   +++++||+|++. .+++|+++       +..+|++++++|+|||++++..++.
T Consensus       120 ~~~~~~~~~~~fD~V~~~g~~l~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  178 (293)
T 3thr_A          120 TLDKDVPAGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDHRNY  178 (293)
T ss_dssp             GHHHHSCCTTCEEEEEECTTCGGGSCCSSSSSHHHHHHHHHHHHTEEEEEEEEEEEECH
T ss_pred             hCccccccCCCeEEEEEcChHHhhcCccccCHHHHHHHHHHHHHHcCCCeEEEEEeCCH
Confidence              2   567899999998 89999999       8999999999999999999998875

>2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme}

Probab=99.76  E-value=2.5e-17  Score=151.60  Aligned_cols=162  Identities=14%  Similarity=0.145  Sum_probs=118.6

Q ss_pred             HHHcccCC--CCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcC---------------CCCCCC
Q 019861          168 LMKGYLKP--VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQE---------------SNFPKD  230 (334)
Q Consensus       168 ~l~~~l~~--~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~---------------~~~~~~  230 (334)
                      .+...+..  .++.+|||||||+|.++..+++..+..+++++|++ .+++.+++++...               .++++ 
T Consensus       154 ~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~-  231 (335)
T 2r3s_A          154 LIAQLVNENKIEPLKVLDISASHGLFGIAVAQHNPNAEIFGVDWA-SVLEVAKENARIQGVASRYHTIAGSAFEVDYGN-  231 (335)
T ss_dssp             HHHHHHTC--CCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEECH-HHHHHHHHHHHHHTCGGGEEEEESCTTTSCCCS-
T ss_pred             HHHHhcccccCCCCEEEEECCCcCHHHHHHHHHCCCCeEEEEecH-HHHHHHHHHHHhcCCCcceEEEecccccCCCCC-
Confidence            44444444  56789999999999999999999777799999999 9999999875321               12333 


Q ss_pred             CceEEEeCccccCCCCH--HHHHHHHHHcccCCcEEEEEEeccCCCCCchHHHHHHHHHhhhhcCccCCCCHHHHHHHHH
Q 019861          231 SIDAVHAGAAIHCWSSP--STGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLCR  308 (334)
Q Consensus       231 ~fD~V~~~~vl~h~~d~--~~~L~~i~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~l~~ll~  308 (334)
                      .||+|++.+++||++++  ..+|++++++|+|||++++.++..............+.........+...++.+++.++++
T Consensus       232 ~~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~ll~  311 (335)
T 2r3s_A          232 DYDLVLLPNFLHHFDVATCEQLLRKIKTALAVEGKVIVFDFIPNSDRITPPDAAAFSLVMLATTPNGDAYTFAEYESMFS  311 (335)
T ss_dssp             CEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEECCCCTTSSCSHHHHHHHHHHHHHSSSCCCCCHHHHHHHHH
T ss_pred             CCcEEEEcchhccCCHHHHHHHHHHHHHhCCCCcEEEEEeecCCCCcCCchHHHHHHHHHHeeCCCCCcCCHHHHHHHHH
Confidence            49999999999999766  6899999999999999999998765432211111112222222223567889999999999


Q ss_pred             hCCCcEEEEeec-CcEEEEEEEcC
Q 019861          309 ACGLVDFKCTRN-RGFVMFTATKP  331 (334)
Q Consensus       309 ~~Gf~~v~~~~~-g~~~~~~a~K~  331 (334)
                      ++||++++.... +...++.+++|
T Consensus       312 ~aGf~~~~~~~~~~~~~~i~~~~~  335 (335)
T 2r3s_A          312 NAGFSHSQLHSLPTTQQQVIVAYK  335 (335)
T ss_dssp             HTTCSEEEEECCTTSSSEEEEEEC
T ss_pred             HCCCCeeeEEECCCCceeEEEecC
Confidence            999999986543 34455555543

>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A*

Probab=99.75  E-value=2.3e-17  Score=151.95  Aligned_cols=153  Identities=14%  Similarity=0.064  Sum_probs=115.8

Q ss_pred             cccCCCCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCC--------------CCCCCCceEEE
Q 019861          171 GYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES--------------NFPKDSIDAVH  236 (334)
Q Consensus       171 ~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~--------------~~~~~~fD~V~  236 (334)
                      ..+...+..+|||||||+|.++..+++..+..+++++|+ +.+++.+++++....              +++. .||+|+
T Consensus       163 ~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~p~-~~D~v~  240 (332)
T 3i53_A          163 AKYDWAALGHVVDVGGGSGGLLSALLTAHEDLSGTVLDL-QGPASAAHRRFLDTGLSGRAQVVVGSFFDPLPA-GAGGYV  240 (332)
T ss_dssp             GSSCCGGGSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTSCCCC-SCSEEE
T ss_pred             HhCCCCCCCEEEEeCCChhHHHHHHHHHCCCCeEEEecC-HHHHHHHHHhhhhcCcCcCeEEecCCCCCCCCC-CCcEEE
Confidence            334444567999999999999999999988889999999 999999998754321              2333 799999


Q ss_pred             eCccccCCCCH--HHHHHHHHHcccCCcEEEEEEeccCCCCCchHHHHHHHHHhhhhcCccCCCCHHHHHHHHHhCCCcE
Q 019861          237 AGAAIHCWSSP--STGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLCRACGLVD  314 (334)
Q Consensus       237 ~~~vl~h~~d~--~~~L~~i~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~l~~ll~~~Gf~~  314 (334)
                      +.++|||++++  ..+|++++++|+|||++++.++..+.. .......   ..... ..+...++.++|.++++++||++
T Consensus       241 ~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~-~~~~~~d---~~~~~-~~~~~~~t~~e~~~ll~~aGf~~  315 (332)
T 3i53_A          241 LSAVLHDWDDLSAVAILRRCAEAAGSGGVVLVIEAVAGDE-HAGTGMD---LRMLT-YFGGKERSLAELGELAAQAGLAV  315 (332)
T ss_dssp             EESCGGGSCHHHHHHHHHHHHHHHTTTCEEEEEECCCC----CCHHHH---HHHHH-HHSCCCCCHHHHHHHHHHTTEEE
T ss_pred             EehhhccCCHHHHHHHHHHHHHhcCCCCEEEEEeecCCCC-CccHHHH---HHHHh-hCCCCCCCHHHHHHHHHHCCCEE
Confidence            99999999987  789999999999999999998876543 1111111   11111 12446789999999999999999


Q ss_pred             EEEeecCcEEEEEEEc
Q 019861          315 FKCTRNRGFVMFTATK  330 (334)
Q Consensus       315 v~~~~~g~~~~~~a~K  330 (334)
                      ++....+.+.++.++|
T Consensus       316 ~~~~~~~~~~vie~r~  331 (332)
T 3i53_A          316 RAAHPISYVSIVEMTA  331 (332)
T ss_dssp             EEEEECSSSEEEEEEE
T ss_pred             EEEEECCCcEEEEEee
Confidence            9876554466666654

>3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana}

Probab=99.75  E-value=1.2e-17  Score=146.14  Aligned_cols=124  Identities=18%  Similarity=0.229  Sum_probs=102.8

Q ss_pred             CCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCC--------------CCCCCCceEEEeCccccC
Q 019861          178 GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES--------------NFPKDSIDAVHAGAAIHC  243 (334)
Q Consensus       178 ~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~--------------~~~~~~fD~V~~~~vl~h  243 (334)
                      +.+|||||||+|.++..++..+.  +|+|+|+++.+++.++++.....              ..++++||+|++..+++|
T Consensus        67 ~~~vLDiGcG~G~~~~~l~~~~~--~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~~l~~  144 (235)
T 3lcc_A           67 LGRALVPGCGGGHDVVAMASPER--FVVGLDISESALAKANETYGSSPKAEYFSFVKEDVFTWRPTELFDLIFDYVFFCA  144 (235)
T ss_dssp             CEEEEEETCTTCHHHHHHCBTTE--EEEEECSCHHHHHHHHHHHTTSGGGGGEEEECCCTTTCCCSSCEEEEEEESSTTT
T ss_pred             CCCEEEeCCCCCHHHHHHHhCCC--eEEEEECCHHHHHHHHHHhhccCCCcceEEEECchhcCCCCCCeeEEEEChhhhc
Confidence            45999999999999999988654  99999999999999999875421              124568999999999999


Q ss_pred             CC--CHHHHHHHHHHcccCCcEEEEEEeccCCCCCchHHHHHHHHHhhhhcCccCCCCHHHHHHHHHhCCCcEEEEee
Q 019861          244 WS--SPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLCRACGLVDFKCTR  319 (334)
Q Consensus       244 ~~--d~~~~L~~i~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~l~~ll~~~Gf~~v~~~~  319 (334)
                      ++  ++..+|+++.++|+|||++++.........                .+....++.+++.++++++||++++...
T Consensus       145 ~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~----------------~~~~~~~~~~~~~~~l~~~Gf~~~~~~~  206 (235)
T 3lcc_A          145 IEPEMRPAWAKSMYELLKPDGELITLMYPITDHV----------------GGPPYKVDVSTFEEVLVPIGFKAVSVEE  206 (235)
T ss_dssp             SCGGGHHHHHHHHHHHEEEEEEEEEEECCCSCCC----------------SCSSCCCCHHHHHHHHGGGTEEEEEEEE
T ss_pred             CCHHHHHHHHHHHHHHCCCCcEEEEEEecccccC----------------CCCCccCCHHHHHHHHHHcCCeEEEEEe
Confidence            99  888999999999999999999887654221                1233457999999999999999988553

>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440}

Probab=99.75  E-value=8.7e-18  Score=145.40  Aligned_cols=160  Identities=14%  Similarity=0.120  Sum_probs=114.3

Q ss_pred             HHHcccCCCCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcC-----------CC-CCCCCceEE
Q 019861          168 LMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQE-----------SN-FPKDSIDAV  235 (334)
Q Consensus       168 ~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~-----------~~-~~~~~fD~V  235 (334)
                      .+...+...++.+|||||||+|.++..+++.+.  +++|+|+++.+++.++++....           .+ .++.+||+|
T Consensus        43 ~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~fD~v  120 (227)
T 3e8s_A           43 AILLAILGRQPERVLDLGCGEGWLLRALADRGI--EAVGVDGDRTLVDAARAAGAGEVHLASYAQLAEAKVPVGKDYDLI  120 (227)
T ss_dssp             HHHHHHHHTCCSEEEEETCTTCHHHHHHHTTTC--EEEEEESCHHHHHHHHHTCSSCEEECCHHHHHTTCSCCCCCEEEE
T ss_pred             HHHHHhhcCCCCEEEEeCCCCCHHHHHHHHCCC--EEEEEcCCHHHHHHHHHhcccccchhhHHhhcccccccCCCccEE
Confidence            344444444568999999999999999999865  9999999999999999861110           12 234569999


Q ss_pred             EeCccccCCCCHHHHHHHHHHcccCCcEEEEEEeccCCCCCchHHHHHH----HHHhhh--hcCccCCCCHHHHHHHHHh
Q 019861          236 HAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLL----RQNMMQ--ISGSYTFLSEREIEDLCRA  309 (334)
Q Consensus       236 ~~~~vl~h~~d~~~~L~~i~r~LkpgG~lii~~~~~~~~~~~~~~~~~~----~~~~~~--~~~~~~~~t~~~l~~ll~~  309 (334)
                      ++..+++ ..++..+|++++++|+|||++++.+++....... .+...+    +..+..  ...+..+++.+++.++|++
T Consensus       121 ~~~~~l~-~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  198 (227)
T 3e8s_A          121 CANFALL-HQDIIELLSAMRTLLVPGGALVIQTLHPWSVADG-DYQDGWREESFAGFAGDWQPMPWYFRTLASWLNALDM  198 (227)
T ss_dssp             EEESCCC-SSCCHHHHHHHHHTEEEEEEEEEEECCTTTTCTT-CCSCEEEEECCTTSSSCCCCEEEEECCHHHHHHHHHH
T ss_pred             EECchhh-hhhHHHHHHHHHHHhCCCeEEEEEecCccccCcc-ccccccchhhhhccccCcccceEEEecHHHHHHHHHH
Confidence            9999999 7899999999999999999999999876432111 000000    000000  0123456799999999999


Q ss_pred             CCCcEEEEeec-------CcEEEEEEEcC
Q 019861          310 CGLVDFKCTRN-------RGFVMFTATKP  331 (334)
Q Consensus       310 ~Gf~~v~~~~~-------g~~~~~~a~K~  331 (334)
                      +||++++....       ....+++++||
T Consensus       199 aGf~~~~~~~~~~~~~~~~~~~~~va~k~  227 (227)
T 3e8s_A          199 AGLRLVSLQEPQHPQSAVPQSLLMVAERH  227 (227)
T ss_dssp             TTEEEEEEECCCCTTCSSCSCEEEEEEEC
T ss_pred             cCCeEEEEecCCCCCCCCceeEEEEeecC
Confidence            99999886541       12566667764

>2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A

Probab=99.75  E-value=2e-17  Score=146.71  Aligned_cols=141  Identities=18%  Similarity=0.166  Sum_probs=105.8

Q ss_pred             CCCCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhc-------------CCCCCCCCceEEEeCcc
Q 019861          174 KPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQ-------------ESNFPKDSIDAVHAGAA  240 (334)
Q Consensus       174 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~-------------~~~~~~~~fD~V~~~~v  240 (334)
                      ...++.+|||||||+|.++..+++.+.  +++|+|+|+.+++.++++...             ..++++++||+|++..+
T Consensus        36 ~~~~~~~vLDiG~G~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~  113 (263)
T 2yqz_A           36 PKGEEPVFLELGVGTGRIALPLIARGY--RYIALDADAAMLEVFRQKIAGVDRKVQVVQADARAIPLPDESVHGVIVVHL  113 (263)
T ss_dssp             CSSSCCEEEEETCTTSTTHHHHHTTTC--EEEEEESCHHHHHHHHHHTTTSCTTEEEEESCTTSCCSCTTCEEEEEEESC
T ss_pred             CCCCCCEEEEeCCcCCHHHHHHHHCCC--EEEEEECCHHHHHHHHHHhhccCCceEEEEcccccCCCCCCCeeEEEECCc
Confidence            345678999999999999999998864  999999999999999988521             11456789999999999


Q ss_pred             ccCCCCHHHHHHHHHHcccCCcEEEEEEeccCCCCCchHHHHHHHHHhhhh----cCccCCCCHHHHHHHHHhCCCcEEE
Q 019861          241 IHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQI----SGSYTFLSEREIEDLCRACGLVDFK  316 (334)
Q Consensus       241 l~h~~d~~~~L~~i~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~t~~~l~~ll~~~Gf~~v~  316 (334)
                      ++|++++..+++++.++|+|||++++.....+ ......+...+.......    ..+..+++.+++.++++++||+++.
T Consensus       114 l~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~  192 (263)
T 2yqz_A          114 WHLVPDWPKVLAEAIRVLKPGGALLEGWDQAE-ASPEWTLQERWRAFAAEEGFPVERGLHAKRLKEVEEALRRLGLKPRT  192 (263)
T ss_dssp             GGGCTTHHHHHHHHHHHEEEEEEEEEEEEEEC-CCHHHHHHHHHHHHHHHHTCCCCCCHHHHHHHHHHHHHHHTTCCCEE
T ss_pred             hhhcCCHHHHHHHHHHHCCCCcEEEEEecCCC-ccHHHHHHHHHHHHHHHhCCCcccccccCCHHHHHHHHHHcCCCcce
Confidence            99999999999999999999999998833321 111111222222211111    1144567899999999999999766


Q ss_pred             E
Q 019861          317 C  317 (334)
Q Consensus       317 ~  317 (334)
                      .
T Consensus       193 ~  193 (263)
T 2yqz_A          193 R  193 (263)
T ss_dssp             E
T ss_pred             E
Confidence            4

>2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42

Probab=99.75  E-value=8.9e-18  Score=147.52  Aligned_cols=130  Identities=18%  Similarity=0.165  Sum_probs=105.5

Q ss_pred             CCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcC--------------CCCCCCCceEEEeCcccc
Q 019861          177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQE--------------SNFPKDSIDAVHAGAAIH  242 (334)
Q Consensus       177 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~--------------~~~~~~~fD~V~~~~vl~  242 (334)
                      ++.+|||||||+|.++..++..+ ..+++|+|+++.+++.++++....              .++++++||+|++..+++
T Consensus        79 ~~~~vLDiGcG~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~  157 (241)
T 2ex4_A           79 GTSCALDCGAGIGRITKRLLLPL-FREVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDFTPEPDSYDVIWIQWVIG  157 (241)
T ss_dssp             CCSEEEEETCTTTHHHHHTTTTT-CSEEEEEESCHHHHHHHHHHTGGGGGGEEEEEECCGGGCCCCSSCEEEEEEESCGG
T ss_pred             CCCEEEEECCCCCHHHHHHHHhc-CCEEEEEeCCHHHHHHHHHHhhhcCCceEEEEEcChhhcCCCCCCEEEEEEcchhh
Confidence            57899999999999999998876 469999999999999999886542              135567899999999999


Q ss_pred             CCCCHH--HHHHHHHHcccCCcEEEEEEeccCCCCCchHHHHHHHHHhhhhcCccCCCCHHHHHHHHHhCCCcEEEEee
Q 019861          243 CWSSPS--TGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLCRACGLVDFKCTR  319 (334)
Q Consensus       243 h~~d~~--~~L~~i~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~l~~ll~~~Gf~~v~~~~  319 (334)
                      |++++.  .+|+++.++|+|||++++.++.....    .       .+ ....+...++.+++.++++++||++++...
T Consensus       158 ~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~----~-------~~-~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~  224 (241)
T 2ex4_A          158 HLTDQHLAEFLRRCKGSLRPNGIIVIKDNMAQEG----V-------IL-DDVDSSVCRDLDVVRRIICSAGLSLLAEER  224 (241)
T ss_dssp             GSCHHHHHHHHHHHHHHEEEEEEEEEEEEEBSSS----E-------EE-ETTTTEEEEBHHHHHHHHHHTTCCEEEEEE
T ss_pred             hCCHHHHHHHHHHHHHhcCCCeEEEEEEccCCCc----c-------ee-cccCCcccCCHHHHHHHHHHcCCeEEEeee
Confidence            999865  89999999999999999999876431    0       00 111233345899999999999999988653

>2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A*

Probab=99.75  E-value=2.5e-17  Score=150.67  Aligned_cols=151  Identities=14%  Similarity=0.190  Sum_probs=113.5

Q ss_pred             HHHHHcccCCCCCCcEEEECCCcCHHHHHHHHc-CCCCeEEEEeCCHHHHHHHHHHHhcCC-------------CCCCCC
Q 019861          166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQQES-------------NFPKDS  231 (334)
Q Consensus       166 ~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~~v~giD~s~~~~~~a~~~~~~~~-------------~~~~~~  231 (334)
                      .+.+.+.+...++.+|||||||+|.++..+++. +.  +|+|+|+|+.+++.++++.....             .++ ++
T Consensus        79 ~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~--~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-~~  155 (318)
T 2fk8_A           79 VDLNLDKLDLKPGMTLLDIGCGWGTTMRRAVERFDV--NVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWEDFA-EP  155 (318)
T ss_dssp             HHHHHTTSCCCTTCEEEEESCTTSHHHHHHHHHHCC--EEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGGCC-CC
T ss_pred             HHHHHHhcCCCCcCEEEEEcccchHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChHHCC-CC
Confidence            345666667677889999999999999999987 54  99999999999999998865421             123 78


Q ss_pred             ceEEEeCccccCC--CCHHHHHHHHHHcccCCcEEEEEEeccCCCCCc----hHH---HHHHHHHhhh-hcCccCCCCHH
Q 019861          232 IDAVHAGAAIHCW--SSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNL----IPF---SRLLRQNMMQ-ISGSYTFLSER  301 (334)
Q Consensus       232 fD~V~~~~vl~h~--~d~~~~L~~i~r~LkpgG~lii~~~~~~~~~~~----~~~---~~~~~~~~~~-~~~~~~~~t~~  301 (334)
                      ||+|++..+++|+  .++..+|+++.++|+|||++++.+++.......    .+.   .......+.. ......+.+.+
T Consensus       156 fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~  235 (318)
T 2fk8_A          156 VDRIVSIEAFEHFGHENYDDFFKRCFNIMPADGRMTVQSSVSYHPYEMAARGKKLSFETARFIKFIVTEIFPGGRLPSTE  235 (318)
T ss_dssp             CSEEEEESCGGGTCGGGHHHHHHHHHHHSCTTCEEEEEEEECCCHHHHHTTCHHHHHHHHHHHHHHHHHTSTTCCCCCHH
T ss_pred             cCEEEEeChHHhcCHHHHHHHHHHHHHhcCCCcEEEEEEeccCCchhhhhccccccccccchhhHHHHhcCCCCcCCCHH
Confidence            9999999999999  578899999999999999999999987532110    000   0001111111 11234567999


Q ss_pred             HHHHHHHhCCCcEEEEee
Q 019861          302 EIEDLCRACGLVDFKCTR  319 (334)
Q Consensus       302 ~l~~ll~~~Gf~~v~~~~  319 (334)
                      ++.++++++||++++...
T Consensus       236 ~~~~~l~~aGf~~~~~~~  253 (318)
T 2fk8_A          236 MMVEHGEKAGFTVPEPLS  253 (318)
T ss_dssp             HHHHHHHHTTCBCCCCEE
T ss_pred             HHHHHHHhCCCEEEEEEe
Confidence            999999999999887543

>2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A*

Probab=99.74  E-value=2.5e-17  Score=139.82  Aligned_cols=145  Identities=19%  Similarity=0.216  Sum_probs=111.2

Q ss_pred             HHcccCCCCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcC--------------CCCCCCCceE
Q 019861          169 MKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQE--------------SNFPKDSIDA  234 (334)
Q Consensus       169 l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~--------------~~~~~~~fD~  234 (334)
                      +.+.+...++.+|||+|||+|.++..+++.+.  +++|+|+++.+++.++++....              .++ +++||+
T Consensus        24 l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~-~~~~D~  100 (199)
T 2xvm_A           24 VLEAVKVVKPGKTLDLGCGNGRNSLYLAANGY--DVDAWDKNAMSIANVERIKSIENLDNLHTRVVDLNNLTF-DRQYDF  100 (199)
T ss_dssp             HHHHTTTSCSCEEEEETCTTSHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHHTCTTEEEEECCGGGCCC-CCCEEE
T ss_pred             HHHHhhccCCCeEEEEcCCCCHHHHHHHHCCC--eEEEEECCHHHHHHHHHHHHhCCCCCcEEEEcchhhCCC-CCCceE
Confidence            33444545678999999999999999999865  9999999999999999875421              133 678999


Q ss_pred             EEeCccccCCC--CHHHHHHHHHHcccCCcEEEEEEeccCCCCCchHHHHHHHHHhhhhcCccCCCCHHHHHHHHHhCCC
Q 019861          235 VHAGAAIHCWS--SPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLCRACGL  312 (334)
Q Consensus       235 V~~~~vl~h~~--d~~~~L~~i~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~l~~ll~~~Gf  312 (334)
                      |++..+++|++  ++..+++++.++|+|||++++.++.......             ....+...++.+++.+++++  |
T Consensus       101 v~~~~~l~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~-------------~~~~~~~~~~~~~l~~~~~~--f  165 (199)
T 2xvm_A          101 ILSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLIVAAMDTADYP-------------CTVGFPFAFKEGELRRYYEG--W  165 (199)
T ss_dssp             EEEESCGGGSCGGGHHHHHHHHHHTEEEEEEEEEEEEBCCSSSC-------------CCSCCSCCBCTTHHHHHTTT--S
T ss_pred             EEEcchhhhCCHHHHHHHHHHHHHhcCCCeEEEEEEeeccCCcC-------------CCCCCCCccCHHHHHHHhcC--C
Confidence            99999999998  7889999999999999998887765432111             01224456799999999987  9


Q ss_pred             cEEEEeec---------------CcEEEEEEEcC
Q 019861          313 VDFKCTRN---------------RGFVMFTATKP  331 (334)
Q Consensus       313 ~~v~~~~~---------------g~~~~~~a~K~  331 (334)
                      ++++....               ..+..++++||
T Consensus       166 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~arK~  199 (199)
T 2xvm_A          166 ERVKYNEDVGELHRTDANGNRIKLRFATMLARKK  199 (199)
T ss_dssp             EEEEEECCEEEEEEECTTSCEEEEEEEEEEEECC
T ss_pred             eEEEecccceEEEeecCCCCeeeEEEEEEEEecC
Confidence            88774321               13567788886

>2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus}

Probab=99.74  E-value=3.8e-17  Score=140.33  Aligned_cols=134  Identities=24%  Similarity=0.332  Sum_probs=101.3

Q ss_pred             HHHcccCCCCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhc---------CCCCCCCCceEEEeC
Q 019861          168 LMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQ---------ESNFPKDSIDAVHAG  238 (334)
Q Consensus       168 ~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~---------~~~~~~~~fD~V~~~  238 (334)
                      .+...+.  ++.+|||||||+|.++..+   + ..+++|+|+++.+++.++++...         ..++++++||+|++.
T Consensus        29 ~l~~~~~--~~~~vLdiG~G~G~~~~~l---~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~  102 (211)
T 2gs9_A           29 ALKGLLP--PGESLLEVGAGTGYWLRRL---P-YPQKVGVEPSEAMLAVGRRRAPEATWVRAWGEALPFPGESFDVVLLF  102 (211)
T ss_dssp             HHHTTCC--CCSEEEEETCTTCHHHHHC---C-CSEEEEECCCHHHHHHHHHHCTTSEEECCCTTSCCSCSSCEEEEEEE
T ss_pred             HHHHhcC--CCCeEEEECCCCCHhHHhC---C-CCeEEEEeCCHHHHHHHHHhCCCcEEEEcccccCCCCCCcEEEEEEc
Confidence            3444444  5789999999999998887   2 23899999999999999987421         124667899999999


Q ss_pred             ccccCCCCHHHHHHHHHHcccCCcEEEEEEeccCCCCCchHHHHHHHHHhhhhcCccCCCCHHHHHHHHHhCC
Q 019861          239 AAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLCRACG  311 (334)
Q Consensus       239 ~vl~h~~d~~~~L~~i~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~l~~ll~~~G  311 (334)
                      ++++|++++..+|+++.++|+|||.+++.+++....  .................|.++++.+++.++++  |
T Consensus       103 ~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~l~--G  171 (211)
T 2gs9_A          103 TTLEFVEDVERVLLEARRVLRPGGALVVGVLEALSP--WAALYRRLGEKGVLPWAQARFLAREDLKALLG--P  171 (211)
T ss_dssp             SCTTTCSCHHHHHHHHHHHEEEEEEEEEEEECTTSH--HHHHHHHHHHTTCTTGGGCCCCCHHHHHHHHC--S
T ss_pred             ChhhhcCCHHHHHHHHHHHcCCCCEEEEEecCCcCc--HHHHHHHHhhccCccccccccCCHHHHHHHhc--C
Confidence            999999999999999999999999999999986531  11111111111111234678899999999998  7

>4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A

Probab=99.74  E-value=1.7e-17  Score=155.90  Aligned_cols=140  Identities=20%  Similarity=0.232  Sum_probs=109.1

Q ss_pred             CCCCCcEEEECCCcCHHHHHHHHcC-CCCeEEEEeCCHHHHHHHHHHHhc----------------------CC------
Q 019861          175 PVLGGNIIDASCGSGLFSRIFAKSG-LFSLVVALDYSENMLKQCYEFVQQ----------------------ES------  225 (334)
Q Consensus       175 ~~~~~~vLDiGcG~G~~~~~l~~~~-~~~~v~giD~s~~~~~~a~~~~~~----------------------~~------  225 (334)
                      ..++.+|||||||+|.++..+++.. +..+|+|+|+++.+++.+++++..                      ..      
T Consensus        81 ~~~~~~VLDlGcG~G~~~~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~g~~~~~~v~~~~~d~~~l~~~~~~  160 (383)
T 4fsd_A           81 SLEGATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAEKFFGSPSRSNVRFLKGFIENLATAEPE  160 (383)
T ss_dssp             GGTTCEEEEESCTTSHHHHHHHHHHTTTCEEEEEECCHHHHHHHHHTHHHHHHHHHSSTTCCCEEEEESCTTCGGGCBSC
T ss_pred             CCCCCEEEEecCccCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhhhhcccccCCCceEEEEccHHHhhhcccC
Confidence            3467899999999999999998873 567999999999999999986421                      01      


Q ss_pred             CCCCCCceEEEeCccccCCCCHHHHHHHHHHcccCCcEEEEEEeccCCCCCchHHHHHHHHHhhhhcCccCCCCHHHHHH
Q 019861          226 NFPKDSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIED  305 (334)
Q Consensus       226 ~~~~~~fD~V~~~~vl~h~~d~~~~L~~i~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~l~~  305 (334)
                      ++++++||+|++..+++|++++..+|++++++|||||++++.++..+....  .........+  .......++.+++.+
T Consensus       161 ~~~~~~fD~V~~~~~l~~~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~--~~~~~~~~~~--~~~~~~~~~~~~~~~  236 (383)
T 4fsd_A          161 GVPDSSVDIVISNCVCNLSTNKLALFKEIHRVLRDGGELYFSDVYADRRLS--EAAQQDPILY--GECLGGALYLEDFRR  236 (383)
T ss_dssp             CCCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEEEESSCCC--HHHHHCHHHH--HTTCTTCCBHHHHHH
T ss_pred             CCCCCCEEEEEEccchhcCCCHHHHHHHHHHHcCCCCEEEEEEeccccccC--HhHhhhHHHh--hcccccCCCHHHHHH
Confidence            566789999999999999999999999999999999999999887653211  1111111111  122346788999999


Q ss_pred             HHHhCCCcEEEEe
Q 019861          306 LCRACGLVDFKCT  318 (334)
Q Consensus       306 ll~~~Gf~~v~~~  318 (334)
                      +|+++||++++..
T Consensus       237 ll~~aGF~~v~~~  249 (383)
T 4fsd_A          237 LVAEAGFRDVRLV  249 (383)
T ss_dssp             HHHHTTCCCEEEE
T ss_pred             HHHHCCCceEEEE
Confidence            9999999877643

>3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei}

Probab=99.74  E-value=8.5e-17  Score=143.82  Aligned_cols=152  Identities=13%  Similarity=0.145  Sum_probs=112.7

Q ss_pred             HHHcccCCCCCCcEEEECCCcCHHHHHHHHc-CCCCeEEEEeCCHH------HHHHHHHHHhcCC---------------
Q 019861          168 LMKGYLKPVLGGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSEN------MLKQCYEFVQQES---------------  225 (334)
Q Consensus       168 ~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~~v~giD~s~~------~~~~a~~~~~~~~---------------  225 (334)
                      .+...+...++.+|||||||+|.++..+++. ++..+++|+|+|+.      +++.+++++....               
T Consensus        34 ~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~g~~~~v~gvD~s~~~~~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~  113 (275)
T 3bkx_A           34 AIAEAWQVKPGEKILEIGCGQGDLSAVLADQVGSSGHVTGIDIASPDYGAPLTLGQAWNHLLAGPLGDRLTVHFNTNLSD  113 (275)
T ss_dssp             HHHHHHTCCTTCEEEEESCTTSHHHHHHHHHHCTTCEEEEECSSCTTCCSSSCHHHHHHHHHTSTTGGGEEEECSCCTTT
T ss_pred             HHHHHcCCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEECCccccccHHHHHHHHHHHHhcCCCCceEEEECChhhh
Confidence            4455556667889999999999999999988 45579999999997      8999988764211               


Q ss_pred             ---CCCCCCceEEEeCccccCCCCHHHHHHHHHHcccCCcEEEEEEeccCCCCCc-hHH-HHHHHH-Hh---h--hhcCc
Q 019861          226 ---NFPKDSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNL-IPF-SRLLRQ-NM---M--QISGS  294 (334)
Q Consensus       226 ---~~~~~~fD~V~~~~vl~h~~d~~~~L~~i~r~LkpgG~lii~~~~~~~~~~~-~~~-~~~~~~-~~---~--~~~~~  294 (334)
                         ++++++||+|++..+++|++++..+++.+.++++|||++++.+......... ... ...+.. .+   .  ....+
T Consensus       114 ~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~~~l~~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  193 (275)
T 3bkx_A          114 DLGPIADQHFDRVVLAHSLWYFASANALALLFKNMAAVCDHVDVAEWSMQPTALDQIGHLQAAMIQGLLYAIAPSDVANI  193 (275)
T ss_dssp             CCGGGTTCCCSEEEEESCGGGSSCHHHHHHHHHHHTTTCSEEEEEEECSSCSSGGGHHHHHHHHHHHHHHHHSCCTTCSC
T ss_pred             ccCCCCCCCEEEEEEccchhhCCCHHHHHHHHHHHhCCCCEEEEEEecCCCCchhhhhHHHHHHHHHHHhhccccccccc
Confidence               1245789999999999999999988888888888899999999877543211 111 111111 11   0  11234


Q ss_pred             cCCCCHHHHHHHHHhCCCcEEEEee
Q 019861          295 YTFLSEREIEDLCRACGLVDFKCTR  319 (334)
Q Consensus       295 ~~~~t~~~l~~ll~~~Gf~~v~~~~  319 (334)
                      ..+++.+++.++++++||++++...
T Consensus       194 ~~~~s~~~l~~~l~~aGf~~~~~~~  218 (275)
T 3bkx_A          194 RTLITPDTLAQIAHDNTWTYTAGTI  218 (275)
T ss_dssp             CCCCCHHHHHHHHHHHTCEEEECCC
T ss_pred             cccCCHHHHHHHHHHCCCeeEEEEE
Confidence            5689999999999999999987543

>2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A*

Probab=99.74  E-value=1.1e-17  Score=148.58  Aligned_cols=148  Identities=16%  Similarity=0.253  Sum_probs=112.8

Q ss_pred             CCCCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcC-----------------------------
Q 019861          174 KPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQE-----------------------------  224 (334)
Q Consensus       174 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~-----------------------------  224 (334)
                      ...++.+|||||||+|.++..++..+. .+|+|+|+|+.+++.+++++...                             
T Consensus        53 ~~~~~~~vLDlGcG~G~~~~~l~~~~~-~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  131 (265)
T 2i62_A           53 GAVKGELLIDIGSGPTIYQLLSACESF-TEIIVSDYTDQNLWELQKWLKKEPGAFDWSPVVTYVCDLEGNRMKGPEKEEK  131 (265)
T ss_dssp             SSCCEEEEEEESCTTCCGGGTTGGGTE-EEEEEEESCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHTTTCSCHHHHHHH
T ss_pred             cccCCCEEEEECCCccHHHHHHhhccc-CeEEEecCCHHHHHHHHHHHhcCCccccchhhhhhhhcccccccchHHHHHH
Confidence            345678999999999999999888764 58999999999999998765321                             


Q ss_pred             ----------------CCCCC---CCceEEEeCcccc----CCCCHHHHHHHHHHcccCCcEEEEEEeccCCCCCchHHH
Q 019861          225 ----------------SNFPK---DSIDAVHAGAAIH----CWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFS  281 (334)
Q Consensus       225 ----------------~~~~~---~~fD~V~~~~vl~----h~~d~~~~L~~i~r~LkpgG~lii~~~~~~~~~~~~~~~  281 (334)
                                      .++++   ++||+|++..+++    |+.++..+|+++.++|+|||++++.++........    
T Consensus       132 l~~~v~~~~~~d~~~~~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~~~~~~~----  207 (265)
T 2i62_A          132 LRRAIKQVLKCDVTQSQPLGGVSLPPADCLLSTLCLDAACPDLPAYRTALRNLGSLLKPGGFLVMVDALKSSYYMI----  207 (265)
T ss_dssp             HHHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESSCCEEEE----
T ss_pred             hhhhheeEEEeeeccCCCCCccccCCccEEEEhhhhhhhcCChHHHHHHHHHHHhhCCCCcEEEEEecCCCceEEc----
Confidence                            12234   7899999999999    66678899999999999999999988654321000    


Q ss_pred             HHHHHHhhhhcCccCCCCHHHHHHHHHhCCCcEEEEeecC-----------cEEEEEEEcCCC
Q 019861          282 RLLRQNMMQISGSYTFLSEREIEDLCRACGLVDFKCTRNR-----------GFVMFTATKPSQ  333 (334)
Q Consensus       282 ~~~~~~~~~~~~~~~~~t~~~l~~ll~~~Gf~~v~~~~~g-----------~~~~~~a~K~~~  333 (334)
                             .........++.+++.++++++||++++.....           ...+++++|+..
T Consensus       208 -------~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~~~~~~~~~~~~~~~~~~~~a~K~~~  263 (265)
T 2i62_A          208 -------GEQKFSSLPLGWETVRDAVEEAGYTIEQFEVISQNYSSTTSNNEGLFSLVGRKPGR  263 (265)
T ss_dssp             -------TTEEEECCCCCHHHHHHHHHHTTCEEEEEEEECCCCCTTTBCCCCEEEEEEECCC-
T ss_pred             -------CCccccccccCHHHHHHHHHHCCCEEEEEEEecccCCccccccceEEEEEeccccc
Confidence                   011113356799999999999999998865432           467888888753

>1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A*

Probab=99.74  E-value=6.9e-17  Score=151.05  Aligned_cols=162  Identities=16%  Similarity=0.100  Sum_probs=117.3

Q ss_pred             HHHHcccCCCCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCC--------------CCCCCCc
Q 019861          167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES--------------NFPKDSI  232 (334)
Q Consensus       167 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~--------------~~~~~~f  232 (334)
                      +.+.+.+...++.+|||||||+|.++..+++.++..+++++|+ +.+++.+++++....              +++. .|
T Consensus       172 ~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~-~~  249 (374)
T 1qzz_A          172 EAPADAYDWSAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVEL-AGPAERARRRFADAGLADRVTVAEGDFFKPLPV-TA  249 (374)
T ss_dssp             HHHHHTSCCTTCCEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTSCCSC-CE
T ss_pred             HHHHHhCCCCCCCEEEEECCCcCHHHHHHHHHCCCCEEEEEeC-HHHHHHHHHHHHhcCCCCceEEEeCCCCCcCCC-CC
Confidence            3444555555678999999999999999999987789999999 999999998764321              2333 49


Q ss_pred             eEEEeCccccCCCCHH--HHHHHHHHcccCCcEEEEEEe--ccCCCCCchHHHHHHHHHhhhhcCccCCCCHHHHHHHHH
Q 019861          233 DAVHAGAAIHCWSSPS--TGVAEISRVLRPGGVFVGTTY--IVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLCR  308 (334)
Q Consensus       233 D~V~~~~vl~h~~d~~--~~L~~i~r~LkpgG~lii~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~l~~ll~  308 (334)
                      |+|++.+++||++++.  .+|++++++|+|||++++.++  .....  ..+..............+...++.+++.++++
T Consensus       250 D~v~~~~vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~  327 (374)
T 1qzz_A          250 DVVLLSFVLLNWSDEDALTILRGCVRALEPGGRLLVLDRADVEGDG--ADRFFSTLLDLRMLTFMGGRVRTRDEVVDLAG  327 (374)
T ss_dssp             EEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEECCH---------HHHHHHHHHHHHHHHSCCCCCHHHHHHHHH
T ss_pred             CEEEEeccccCCCHHHHHHHHHHHHHhcCCCcEEEEEechhhcCCC--CCcchhhhcchHHHHhCCCcCCCHHHHHHHHH
Confidence            9999999999999885  899999999999999999888  43211  11111111111111111346789999999999


Q ss_pred             hCCCcEEEEeec-CcE-----EEEEEEcCC
Q 019861          309 ACGLVDFKCTRN-RGF-----VMFTATKPS  332 (334)
Q Consensus       309 ~~Gf~~v~~~~~-g~~-----~~~~a~K~~  332 (334)
                      ++||++++.... +.+     .++.++|+.
T Consensus       328 ~aGf~~~~~~~~~~~~~~~~~~~i~~~~~~  357 (374)
T 1qzz_A          328 SAGLALASERTSGSTTLPFDFSILEFTAVS  357 (374)
T ss_dssp             TTTEEEEEEEEECCSSCSSCEEEEEEEECC
T ss_pred             HCCCceEEEEECCCCcccCCcEEEEEEECc
Confidence            999999886543 334     677777753

>1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A*

Probab=99.73  E-value=1e-16  Score=149.16  Aligned_cols=161  Identities=13%  Similarity=0.173  Sum_probs=118.5

Q ss_pred             HHHcccCCCCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCC--------------CCCCCCce
Q 019861          168 LMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES--------------NFPKDSID  233 (334)
Q Consensus       168 ~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~--------------~~~~~~fD  233 (334)
                      .+.+.+...++.+|||||||+|.++..+++.++..+++++|+ +.+++.+++++....              +++. .||
T Consensus       174 ~l~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~-~~D  251 (360)
T 1tw3_A          174 APAAAYDWTNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEM-AGTVDTARSYLKDEGLSDRVDVVEGDFFEPLPR-KAD  251 (360)
T ss_dssp             HHHHHSCCTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-TTHHHHHHHHHHHTTCTTTEEEEECCTTSCCSS-CEE
T ss_pred             HHHHhCCCccCcEEEEeCCcCcHHHHHHHHhCCCCEEEEecC-HHHHHHHHHHHHhcCCCCceEEEeCCCCCCCCC-Ccc
Confidence            344455555678999999999999999999988789999999 999999998764321              2333 499


Q ss_pred             EEEeCccccCCCCH--HHHHHHHHHcccCCcEEEEEEec-cCCCCCchHHHHHHHHHhhhhcCccCCCCHHHHHHHHHhC
Q 019861          234 AVHAGAAIHCWSSP--STGVAEISRVLRPGGVFVGTTYI-VDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLCRAC  310 (334)
Q Consensus       234 ~V~~~~vl~h~~d~--~~~L~~i~r~LkpgG~lii~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~l~~ll~~~  310 (334)
                      +|++.+++||++++  ..+|++++++|+|||++++.++. .... ....+...+...... ..+...++.++|.++++++
T Consensus       252 ~v~~~~vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~t~~e~~~ll~~a  329 (360)
T 1tw3_A          252 AIILSFVLLNWPDHDAVRILTRCAEALEPGGRILIHERDDLHEN-SFNEQFTELDLRMLV-FLGGALRTREKWDGLAASA  329 (360)
T ss_dssp             EEEEESCGGGSCHHHHHHHHHHHHHTEEEEEEEEEEECCBCGGG-CCSHHHHHHHHHHHH-HHSCCCCBHHHHHHHHHHT
T ss_pred             EEEEcccccCCCHHHHHHHHHHHHHhcCCCcEEEEEEEeccCCC-CCcchhhhccHHHhh-hcCCcCCCHHHHHHHHHHC
Confidence            99999999999987  48999999999999999999877 3211 111111111111111 1135678999999999999


Q ss_pred             CCcEEEEeec-Cc-----EEEEEEEcCC
Q 019861          311 GLVDFKCTRN-RG-----FVMFTATKPS  332 (334)
Q Consensus       311 Gf~~v~~~~~-g~-----~~~~~a~K~~  332 (334)
                      ||++++.... +.     +.++.++|+.
T Consensus       330 Gf~~~~~~~~~~~~~~~~~~~i~~~~~~  357 (360)
T 1tw3_A          330 GLVVEEVRQLPSPTIPYDLSLLVLAPAA  357 (360)
T ss_dssp             TEEEEEEEEEECSSSSCEEEEEEEEEC-
T ss_pred             CCeEEEEEeCCCCcccCccEEEEEEeCC
Confidence            9999886543 33     6788888764

>2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ...

Probab=99.73  E-value=9e-18  Score=151.59  Aligned_cols=130  Identities=18%  Similarity=0.202  Sum_probs=96.2

Q ss_pred             CCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhc---------------------------------
Q 019861          177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQ---------------------------------  223 (334)
Q Consensus       177 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~---------------------------------  223 (334)
                      ++.+|||||||+|.+...++... ..+|+|+|+|+.|++.|++++..                                 
T Consensus        71 ~~~~vLDiGcG~G~~~~l~~~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~  149 (289)
T 2g72_A           71 SGRTLIDIGSGPTVYQLLSACSH-FEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQLRA  149 (289)
T ss_dssp             CCSEEEEETCTTCCGGGTTGGGG-CSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHHHH
T ss_pred             CCCeEEEECCCcChHHHHhhccC-CCeEEEeCCCHHHHHHHHHHHhhCcccccchhhhhHHHHhcCcccchhhhHHHHHh
Confidence            57899999999999554444332 34999999999999988874321                                 


Q ss_pred             --------C----CC-----CCCCCceEEEeCccccC----CCCHHHHHHHHHHcccCCcEEEEEEeccCCCCCchHHHH
Q 019861          224 --------E----SN-----FPKDSIDAVHAGAAIHC----WSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSR  282 (334)
Q Consensus       224 --------~----~~-----~~~~~fD~V~~~~vl~h----~~d~~~~L~~i~r~LkpgG~lii~~~~~~~~~~~~~~~~  282 (334)
                              +    .+     +++++||+|++..+|+|    ++++..+|++++++|||||++++...........     
T Consensus       150 ~~~~~~~~D~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~r~LkpGG~l~~~~~~~~~~~~~-----  224 (289)
T 2g72_A          150 RVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLLIGALEESWYLA-----  224 (289)
T ss_dssp             HEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEEESCCEEEE-----
T ss_pred             hhceEEecccCCCCCccccccCCCCCCEEEehhhhhhhcCCHHHHHHHHHHHHHhcCCCCEEEEEEecCcceEEc-----
Confidence                    1    12     33467999999999999    6678899999999999999999976543211000     


Q ss_pred             HHHHHhhhhcCccCCCCHHHHHHHHHhCCCcEEEEe
Q 019861          283 LLRQNMMQISGSYTFLSEREIEDLCRACGLVDFKCT  318 (334)
Q Consensus       283 ~~~~~~~~~~~~~~~~t~~~l~~ll~~~Gf~~v~~~  318 (334)
                            .....+..+++.+++.++|+++||++++..
T Consensus       225 ------~~~~~~~~~~~~~~l~~~l~~aGf~~~~~~  254 (289)
T 2g72_A          225 ------GEARLTVVPVSEEEVREALVRSGYKVRDLR  254 (289)
T ss_dssp             ------TTEEEECCCCCHHHHHHHHHHTTEEEEEEE
T ss_pred             ------CCeeeeeccCCHHHHHHHHHHcCCeEEEee
Confidence                  011113457899999999999999988743

>2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa}

Probab=99.72  E-value=9.8e-17  Score=147.75  Aligned_cols=159  Identities=14%  Similarity=0.100  Sum_probs=118.3

Q ss_pred             HHHHHcccCCCCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcC--------------CCCCCCC
Q 019861          166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQE--------------SNFPKDS  231 (334)
Q Consensus       166 ~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~--------------~~~~~~~  231 (334)
                      ...+...+...+ .+|||||||+|.++..+++..+..+++++|+ +.+++.+++++...              .+++ +.
T Consensus       157 ~~~~~~~~~~~~-~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~-~~  233 (334)
T 2ip2_A          157 FHEIPRLLDFRG-RSFVDVGGGSGELTKAILQAEPSARGVMLDR-EGSLGVARDNLSSLLAGERVSLVGGDMLQEVP-SN  233 (334)
T ss_dssp             HHHHHHHSCCTT-CEEEEETCTTCHHHHHHHHHCTTCEEEEEEC-TTCTHHHHHHTHHHHHTTSEEEEESCTTTCCC-SS
T ss_pred             HHHHHHhCCCCC-CEEEEeCCCchHHHHHHHHHCCCCEEEEeCc-HHHHHHHHHHHhhcCCCCcEEEecCCCCCCCC-CC
Confidence            344445554444 8999999999999999999987779999999 99999998764321              1333 57


Q ss_pred             ceEEEeCccccCCCCHH--HHHHHHHHcccCCcEEEEEEeccCCCCCchHHHHHHHH-HhhhhcCccCCCCHHHHHHHHH
Q 019861          232 IDAVHAGAAIHCWSSPS--TGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQ-NMMQISGSYTFLSEREIEDLCR  308 (334)
Q Consensus       232 fD~V~~~~vl~h~~d~~--~~L~~i~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~t~~~l~~ll~  308 (334)
                      ||+|++.+++||++++.  .+|++++++|+|||++++.+...+....  +....... ..... .....++.++|.++++
T Consensus       234 ~D~v~~~~vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~--~~~~~~~~~~~~~~-~~~~~~t~~e~~~ll~  310 (334)
T 2ip2_A          234 GDIYLLSRIIGDLDEAASLRLLGNCREAMAGDGRVVVIERTISASEP--SPMSVLWDVHLFMA-CAGRHRTTEEVVDLLG  310 (334)
T ss_dssp             CSEEEEESCGGGCCHHHHHHHHHHHHHHSCTTCEEEEEECCBCSSSC--CHHHHHHHHHHHHH-HSCCCCBHHHHHHHHH
T ss_pred             CCEEEEchhccCCCHHHHHHHHHHHHHhcCCCCEEEEEEeccCCCCC--cchhHHhhhHhHhh-CCCcCCCHHHHHHHHH
Confidence            99999999999999876  8999999999999999999887643221  11111111 11111 1245679999999999


Q ss_pred             hCCCcEEEEee-cCcEEEEEEEc
Q 019861          309 ACGLVDFKCTR-NRGFVMFTATK  330 (334)
Q Consensus       309 ~~Gf~~v~~~~-~g~~~~~~a~K  330 (334)
                      ++||++++... .+...++.++|
T Consensus       311 ~aGf~~~~~~~~~~~~~~i~~~~  333 (334)
T 2ip2_A          311 RGGFAVERIVDLPMETRMIVAAR  333 (334)
T ss_dssp             HTTEEEEEEEEETTTEEEEEEEE
T ss_pred             HCCCceeEEEECCCCCEEEEEEe
Confidence            99999988654 45677777776

>1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36

Probab=99.72  E-value=2.2e-17  Score=141.54  Aligned_cols=128  Identities=14%  Similarity=0.115  Sum_probs=98.3

Q ss_pred             cCCCCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhc--------------CC------------C
Q 019861          173 LKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQ--------------ES------------N  226 (334)
Q Consensus       173 l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~--------------~~------------~  226 (334)
                      +...++.+|||+|||+|..+..+++.+.  +|+|+|+|+.|++.|+++...              ..            +
T Consensus        18 l~~~~~~~vLD~GCG~G~~~~~la~~g~--~V~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~l~   95 (203)
T 1pjz_A           18 LNVVPGARVLVPLCGKSQDMSWLSGQGY--HVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFALT   95 (203)
T ss_dssp             HCCCTTCEEEETTTCCSHHHHHHHHHCC--EEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSSST
T ss_pred             cccCCCCEEEEeCCCCcHhHHHHHHCCC--eEEEEeCCHHHHHHHHHHccCCcccccccccccccCCccEEEECccccCC
Confidence            3445678999999999999999999876  999999999999999987542              11            1


Q ss_pred             CCC-CCceEEEeCccccCCCCH--HHHHHHHHHcccCCcEEEEEEeccCCCCCchHHHHHHHHHhhhhcCccCCCCHHHH
Q 019861          227 FPK-DSIDAVHAGAAIHCWSSP--STGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREI  303 (334)
Q Consensus       227 ~~~-~~fD~V~~~~vl~h~~d~--~~~L~~i~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~l  303 (334)
                      +++ ++||+|++..+++|+++.  ..++++++++|||||++++.+......               ...+....++.+++
T Consensus        96 ~~~~~~fD~v~~~~~l~~l~~~~~~~~l~~~~r~LkpgG~~~l~~~~~~~~---------------~~~~~~~~~~~~el  160 (203)
T 1pjz_A           96 ARDIGHCAAFYDRAAMIALPADMRERYVQHLEALMPQACSGLLITLEYDQA---------------LLEGPPFSVPQTWL  160 (203)
T ss_dssp             HHHHHSEEEEEEESCGGGSCHHHHHHHHHHHHHHSCSEEEEEEEEESSCSS---------------SSSSCCCCCCHHHH
T ss_pred             cccCCCEEEEEECcchhhCCHHHHHHHHHHHHHHcCCCcEEEEEEEecCcc---------------ccCCCCCCCCHHHH
Confidence            223 689999999999999744  468999999999999966665543211               01112234789999


Q ss_pred             HHHHHhCCCcEEEEe
Q 019861          304 EDLCRACGLVDFKCT  318 (334)
Q Consensus       304 ~~ll~~~Gf~~v~~~  318 (334)
                      .+++++ ||+++...
T Consensus       161 ~~~~~~-gf~i~~~~  174 (203)
T 1pjz_A          161 HRVMSG-NWEVTKVG  174 (203)
T ss_dssp             HHTSCS-SEEEEEEE
T ss_pred             HHHhcC-CcEEEEec
Confidence            999998 99877643

>3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15}

Probab=99.72  E-value=1.2e-16  Score=139.85  Aligned_cols=161  Identities=17%  Similarity=0.206  Sum_probs=113.8

Q ss_pred             HHHHHHcccCCCCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCC-------------CCCCCC
Q 019861          165 EFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES-------------NFPKDS  231 (334)
Q Consensus       165 ~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~-------------~~~~~~  231 (334)
                      ..+.+...+.+  +.+|||+|||+|.++..+++.   .+++|+|+++.+++.++++.....             ++ .++
T Consensus        23 ~~~~~~~~~~~--~~~vLdiG~G~G~~~~~l~~~---~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~-~~~   96 (243)
T 3d2l_A           23 WVAWVLEQVEP--GKRIADIGCGTGTATLLLADH---YEVTGVDLSEEMLEIAQEKAMETNRHVDFWVQDMRELEL-PEP   96 (243)
T ss_dssp             HHHHHHHHSCT--TCEEEEESCTTCHHHHHHTTT---SEEEEEESCHHHHHHHHHHHHHTTCCCEEEECCGGGCCC-SSC
T ss_pred             HHHHHHHHcCC--CCeEEEecCCCCHHHHHHhhC---CeEEEEECCHHHHHHHHHhhhhcCCceEEEEcChhhcCC-CCC
Confidence            34455555554  689999999999999999887   399999999999999998765321             23 378


Q ss_pred             ceEEEeCc-cccCCC---CHHHHHHHHHHcccCCcEEEEEEeccCCCCCc---hHHH------HHHHHHh----------
Q 019861          232 IDAVHAGA-AIHCWS---SPSTGVAEISRVLRPGGVFVGTTYIVDGPFNL---IPFS------RLLRQNM----------  288 (334)
Q Consensus       232 fD~V~~~~-vl~h~~---d~~~~L~~i~r~LkpgG~lii~~~~~~~~~~~---~~~~------~~~~~~~----------  288 (334)
                      ||+|++.. +++|+.   ++..+|+++.++|+|||++++..++.......   ..+.      ...|...          
T Consensus        97 fD~v~~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (243)
T 3d2l_A           97 VDAITILCDSLNYLQTEADVKQTFDSAARLLTDGGKLLFDVHSPYKMETLFNGKTYATHAEQSSYIWFADPGEEPLSVVH  176 (243)
T ss_dssp             EEEEEECTTGGGGCCSHHHHHHHHHHHHHHEEEEEEEEEEEECHHHHHTTTSSEEEEEECSSEEEEEEEEECSSTTEEEE
T ss_pred             cCEEEEeCCchhhcCCHHHHHHHHHHHHHhcCCCeEEEEEcCCHHHHHHhcCCcceeEECCCcEEEEEeecCccccEEEE
Confidence            99999986 999995   45689999999999999999977653210000   0000      0000000          


Q ss_pred             -------------hh--hcCccCCCCHHHHHHHHHhCCCcEEEEeec---------CcEEEEEEEcC
Q 019861          289 -------------MQ--ISGSYTFLSEREIEDLCRACGLVDFKCTRN---------RGFVMFTATKP  331 (334)
Q Consensus       289 -------------~~--~~~~~~~~t~~~l~~ll~~~Gf~~v~~~~~---------g~~~~~~a~K~  331 (334)
                                   ..  ...+.++++.+++.++|+++||++++....         ....+++++|+
T Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aGf~~~~~~~~~~~~~~~~~~~~~~~va~K~  243 (243)
T 3d2l_A          177 ELTFFIEGEDGRYDRVDETHHQRTYPPEQYITWLREAGFRVCAVTGDFKSDAPTETAERIFFVAEKI  243 (243)
T ss_dssp             EEEEEEECTTSCEEEEEEEEEEECCCHHHHHHHHHHTTEEEEEEEETTSSSCCCTTCSEEEEEEEEC
T ss_pred             EEEEEEEcCCCceEEEEEEEeEecCCHHHHHHHHHHCCCeEEEEecCcccCCCCCCceEEEEEEEeC
Confidence                         00  011346789999999999999999886532         35678888885

>3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae}

Probab=99.72  E-value=2.6e-17  Score=143.90  Aligned_cols=160  Identities=19%  Similarity=0.209  Sum_probs=113.3

Q ss_pred             HHHHcccCCCCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcC---------CCCCCCCceEEEe
Q 019861          167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQE---------SNFPKDSIDAVHA  237 (334)
Q Consensus       167 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~---------~~~~~~~fD~V~~  237 (334)
                      +.+...+  .++.+|||+|||+|.++..+++.++  +++|+|+++.+++.++++....         .++ +++||+|++
T Consensus        32 ~~l~~~~--~~~~~vLdiG~G~G~~~~~l~~~~~--~v~~~D~s~~~~~~a~~~~~~~~~~~~d~~~~~~-~~~~D~v~~  106 (239)
T 3bxo_A           32 DLVRSRT--PEASSLLDVACGTGTHLEHFTKEFG--DTAGLELSEDMLTHARKRLPDATLHQGDMRDFRL-GRKFSAVVS  106 (239)
T ss_dssp             HHHHHHC--TTCCEEEEETCTTSHHHHHHHHHHS--EEEEEESCHHHHHHHHHHCTTCEEEECCTTTCCC-SSCEEEEEE
T ss_pred             HHHHHhc--CCCCeEEEecccCCHHHHHHHHhCC--cEEEEeCCHHHHHHHHHhCCCCEEEECCHHHccc-CCCCcEEEE
Confidence            3444444  3478999999999999999999886  9999999999999999875321         123 578999995


Q ss_pred             -CccccCCCCH---HHHHHHHHHcccCCcEEEEEEeccCCCCCchHH-----------HH---------H---H-HHHh-
Q 019861          238 -GAAIHCWSSP---STGVAEISRVLRPGGVFVGTTYIVDGPFNLIPF-----------SR---------L---L-RQNM-  288 (334)
Q Consensus       238 -~~vl~h~~d~---~~~L~~i~r~LkpgG~lii~~~~~~~~~~~~~~-----------~~---------~---~-~~~~-  288 (334)
                       ..+++|+.++   ..+|++++++|+|||.+++.+++..........           ..         .   . .... 
T Consensus       107 ~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (239)
T 3bxo_A          107 MFSSVGYLKTTEELGAAVASFAEHLEPGGVVVVEPWWFPETFADGWVSADVVRRDGRTVARVSHSVREGNATRMEVHFTV  186 (239)
T ss_dssp             CTTGGGGCCSHHHHHHHHHHHHHTEEEEEEEEECCCCCTTTCCTTCEEEEEEEETTEEEEEEEEEEEETTEEEEEEEEEE
T ss_pred             cCchHhhcCCHHHHHHHHHHHHHhcCCCeEEEEEeccCcccccccceEeeEEecCCceEEEEEEEecCCCEEEEEEEEEE
Confidence             5599999654   689999999999999999987665322100000           00         0   0 0000 


Q ss_pred             hh---------hcCccCCCCHHHHHHHHHhCCCcEEEEee-cCcEEEEEEEcC
Q 019861          289 MQ---------ISGSYTFLSEREIEDLCRACGLVDFKCTR-NRGFVMFTATKP  331 (334)
Q Consensus       289 ~~---------~~~~~~~~t~~~l~~ll~~~Gf~~v~~~~-~g~~~~~~a~K~  331 (334)
                      ..         ...+.++++.+++.++|+++||+++.... .+...+++++||
T Consensus       187 ~~~~~~~~~~~~~~~~~~~t~~~~~~ll~~aGF~v~~~~~~~~~~~~~va~K~  239 (239)
T 3bxo_A          187 ADPGKGVRHFSDVHLITLFHQAEYEAAFTAAGLRVEYLEGGPSGRGLFVGVPA  239 (239)
T ss_dssp             EETTTEEEEEEEEEEEECCCHHHHHHHHHHTTEEEEEESSTTTSSCEEEEEEC
T ss_pred             ecCCCcceEEEEEEEeeecCHHHHHHHHHHCCCEEEEeEcCCCCceEEEEecC
Confidence            00         01134679999999999999997766543 345778888885

>3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus}

Probab=99.72  E-value=1.1e-16  Score=149.37  Aligned_cols=152  Identities=12%  Similarity=0.118  Sum_probs=113.4

Q ss_pred             CCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCC-----------------CCCCCCceEEEeCc
Q 019861          177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES-----------------NFPKDSIDAVHAGA  239 (334)
Q Consensus       177 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~-----------------~~~~~~fD~V~~~~  239 (334)
                      ...+|||||||+|.++..+++.++..+++++|+ +.+++.+++++....                 +++ ++||+|++.+
T Consensus       179 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~p-~~~D~v~~~~  256 (363)
T 3dp7_A          179 HPKRLLDIGGNTGKWATQCVQYNKEVEVTIVDL-PQQLEMMRKQTAGLSGSERIHGHGANLLDRDVPFP-TGFDAVWMSQ  256 (363)
T ss_dssp             CCSEEEEESCTTCHHHHHHHHHSTTCEEEEEEC-HHHHHHHHHHHTTCTTGGGEEEEECCCCSSSCCCC-CCCSEEEEES
T ss_pred             CCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeC-HHHHHHHHHHHHhcCcccceEEEEccccccCCCCC-CCcCEEEEec
Confidence            467999999999999999999988889999999 999999998754321                 133 6899999999


Q ss_pred             cccCCCCHH--HHHHHHHHcccCCcEEEEEEeccCCCCCchHHH--HHHHHHh-hhhcCccCCCCHHHHHHHHHhCCCcE
Q 019861          240 AIHCWSSPS--TGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFS--RLLRQNM-MQISGSYTFLSEREIEDLCRACGLVD  314 (334)
Q Consensus       240 vl~h~~d~~--~~L~~i~r~LkpgG~lii~~~~~~~~~~~~~~~--~~~~~~~-~~~~~~~~~~t~~~l~~ll~~~Gf~~  314 (334)
                      +|||++++.  .+|++++++|+|||++++.++..+.........  ......+ .........++.+++.++++++||++
T Consensus       257 vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~AGf~~  336 (363)
T 3dp7_A          257 FLDCFSEEEVISILTRVAQSIGKDSKVYIMETLWDRQRYETASYCLTQISLYFTAMANGNSKMFHSDDLIRCIENAGLEV  336 (363)
T ss_dssp             CSTTSCHHHHHHHHHHHHHHCCTTCEEEEEECCTTSCSSHHHHHHHHHHHHHHHHSSCSSCCSCCHHHHHHHHHTTTEEE
T ss_pred             hhhhCCHHHHHHHHHHHHHhcCCCcEEEEEeeccCCccccchhhHHHHhhhhHHhhhCCCCcccCHHHHHHHHHHcCCeE
Confidence            999999774  789999999999999999998765432221111  1111111 11123456789999999999999999


Q ss_pred             EEEe-ecC-cEEEEEEEc
Q 019861          315 FKCT-RNR-GFVMFTATK  330 (334)
Q Consensus       315 v~~~-~~g-~~~~~~a~K  330 (334)
                      ++.. ..| ...++.++|
T Consensus       337 v~~~~~~g~~~svi~~~~  354 (363)
T 3dp7_A          337 EEIQDNIGLGHSILQCRL  354 (363)
T ss_dssp             SCCCCCBTTTBEEEEEEE
T ss_pred             EEEEeCCCCCceEEEEee
Confidence            8865 233 355555554

>4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A*

Probab=99.72  E-value=3.2e-16  Score=145.59  Aligned_cols=162  Identities=14%  Similarity=0.131  Sum_probs=121.4

Q ss_pred             HHHcccCCCCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCC------------CCCCCCceEE
Q 019861          168 LMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES------------NFPKDSIDAV  235 (334)
Q Consensus       168 ~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~------------~~~~~~fD~V  235 (334)
                      .+...+......+|||||||+|.++..+++++|..+++..|. +.+++.++++.....            ..+...+|+|
T Consensus       170 ~~~~~~~~~~~~~v~DvGgG~G~~~~~l~~~~p~~~~~~~dl-p~v~~~a~~~~~~~~~~rv~~~~gD~~~~~~~~~D~~  248 (353)
T 4a6d_A          170 SVLTAFDLSVFPLMCDLGGGAGALAKECMSLYPGCKITVFDI-PEVVWTAKQHFSFQEEEQIDFQEGDFFKDPLPEADLY  248 (353)
T ss_dssp             HHHHSSCGGGCSEEEEETCTTSHHHHHHHHHCSSCEEEEEEC-HHHHHHHHHHSCC--CCSEEEEESCTTTSCCCCCSEE
T ss_pred             HHHHhcCcccCCeEEeeCCCCCHHHHHHHHhCCCceeEeccC-HHHHHHHHHhhhhcccCceeeecCccccCCCCCceEE
Confidence            444555555567999999999999999999999889999997 889999988754321            1123468999


Q ss_pred             EeCccccCCCCHH--HHHHHHHHcccCCcEEEEEEeccCCCCCchHHHHHHH-HHhhhhcCccCCCCHHHHHHHHHhCCC
Q 019861          236 HAGAAIHCWSSPS--TGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLR-QNMMQISGSYTFLSEREIEDLCRACGL  312 (334)
Q Consensus       236 ~~~~vl~h~~d~~--~~L~~i~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~t~~~l~~ll~~~Gf  312 (334)
                      ++.++||+|+|+.  .+|++++++|+|||++++.+...+.... .+...... -.+.. ......+|.++|+++++++||
T Consensus       249 ~~~~vlh~~~d~~~~~iL~~~~~al~pgg~lli~e~~~~~~~~-~~~~~~~~dl~ml~-~~~g~ert~~e~~~ll~~AGf  326 (353)
T 4a6d_A          249 ILARVLHDWADGKCSHLLERIYHTCKPGGGILVIESLLDEDRR-GPLLTQLYSLNMLV-QTEGQERTPTHYHMLLSSAGF  326 (353)
T ss_dssp             EEESSGGGSCHHHHHHHHHHHHHHCCTTCEEEEEECCCCTTSC-CCHHHHHHHHHHHH-SSSCCCCCHHHHHHHHHHHTC
T ss_pred             EeeeecccCCHHHHHHHHHHHHhhCCCCCEEEEEEeeeCCCCC-CCHHHHHHHHHHHH-hCCCcCCCHHHHHHHHHHCCC
Confidence            9999999999884  7899999999999999999987653322 22222222 12221 223456799999999999999


Q ss_pred             cEEEEeec-CcEEEEEEEcCC
Q 019861          313 VDFKCTRN-RGFVMFTATKPS  332 (334)
Q Consensus       313 ~~v~~~~~-g~~~~~~a~K~~  332 (334)
                      +++++... +.+.+++|+|.-
T Consensus       327 ~~v~v~~~~~~~~~i~ArKgt  347 (353)
T 4a6d_A          327 RDFQFKKTGAIYDAILARKGT  347 (353)
T ss_dssp             EEEEEECCSSSCEEEEEECCC
T ss_pred             ceEEEEEcCCceEEEEEEecC
Confidence            99997644 467889999963

>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=99.71  E-value=2.9e-16  Score=132.38  Aligned_cols=129  Identities=18%  Similarity=0.212  Sum_probs=106.6

Q ss_pred             CCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcC---------CCCCCCCceEEEeC-ccccCCCC
Q 019861          177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQE---------SNFPKDSIDAVHAG-AAIHCWSS  246 (334)
Q Consensus       177 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~---------~~~~~~~fD~V~~~-~vl~h~~d  246 (334)
                      ++.+|||+|||+|.++..++..+.  +++|+|+++.+++.++++....         .++++++||+|++. .+++|+.+
T Consensus        46 ~~~~vLdiG~G~G~~~~~l~~~~~--~v~~~D~~~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~~D~i~~~~~~~~~~~~  123 (195)
T 3cgg_A           46 RGAKILDAGCGQGRIGGYLSKQGH--DVLGTDLDPILIDYAKQDFPEARWVVGDLSVDQISETDFDLIVSAGNVMGFLAE  123 (195)
T ss_dssp             TTCEEEEETCTTTHHHHHHHHTTC--EEEEEESCHHHHHHHHHHCTTSEEEECCTTTSCCCCCCEEEEEECCCCGGGSCH
T ss_pred             CCCeEEEECCCCCHHHHHHHHCCC--cEEEEcCCHHHHHHHHHhCCCCcEEEcccccCCCCCCceeEEEECCcHHhhcCh
Confidence            478999999999999999999865  9999999999999999875421         14557899999998 78999853


Q ss_pred             --HHHHHHHHHHcccCCcEEEEEEeccCCCCCchHHHHHHHHHhhhhcCccCCCCHHHHHHHHHhCCCcEEEEeec----
Q 019861          247 --PSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLCRACGLVDFKCTRN----  320 (334)
Q Consensus       247 --~~~~L~~i~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~l~~ll~~~Gf~~v~~~~~----  320 (334)
                        ...+|+++.++|+|||.+++..+...                        .++.+++.++++++||++++....    
T Consensus       124 ~~~~~~l~~~~~~l~~~G~l~~~~~~~~------------------------~~~~~~~~~~l~~~Gf~~~~~~~~~~~~  179 (195)
T 3cgg_A          124 DGREPALANIHRALGADGRAVIGFGAGR------------------------GWVFGDFLEVAERVGLELENAFESWDLK  179 (195)
T ss_dssp             HHHHHHHHHHHHHEEEEEEEEEEEETTS------------------------SCCHHHHHHHHHHHTEEEEEEESSTTCC
T ss_pred             HHHHHHHHHHHHHhCCCCEEEEEeCCCC------------------------CcCHHHHHHHHHHcCCEEeeeecccccC
Confidence              47899999999999999999876532                        258899999999999998875432    


Q ss_pred             -----CcEEEEEEEcC
Q 019861          321 -----RGFVMFTATKP  331 (334)
Q Consensus       321 -----g~~~~~~a~K~  331 (334)
                           ..+.+++++|+
T Consensus       180 ~~~~~~~~~~~v~~k~  195 (195)
T 3cgg_A          180 PFVQGSEFLVAVFTKK  195 (195)
T ss_dssp             BCCTTCSEEEEEEEEC
T ss_pred             cCCCCCcEEEEEEecC
Confidence                 45777777774

>1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43

Probab=99.70  E-value=2.7e-16  Score=136.25  Aligned_cols=157  Identities=18%  Similarity=0.244  Sum_probs=108.7

Q ss_pred             HHHHcccCCCCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcC-------------CCCCCCCce
Q 019861          167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQE-------------SNFPKDSID  233 (334)
Q Consensus       167 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~-------------~~~~~~~fD  233 (334)
                      +.+...+..  +.+|||+|||+|.++..++..++  +++|+|+++.+++.++++....             .++++++||
T Consensus        30 ~~l~~~~~~--~~~vLDlG~G~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~D  105 (227)
T 1ve3_A           30 PLLMKYMKK--RGKVLDLACGVGGFSFLLEDYGF--EVVGVDISEDMIRKAREYAKSRESNVEFIVGDARKLSFEDKTFD  105 (227)
T ss_dssp             HHHHHSCCS--CCEEEEETCTTSHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTTCCCEEEECCTTSCCSCTTCEE
T ss_pred             HHHHHhcCC--CCeEEEEeccCCHHHHHHHHcCC--EEEEEECCHHHHHHHHHHHHhcCCCceEEECchhcCCCCCCcEE
Confidence            455555554  78999999999999999999987  9999999999999999876422             134567999


Q ss_pred             EEEeCcc--ccCCCCHHHHHHHHHHcccCCcEEEEEEeccCCCCCc-h---HHHHHHHHH-hhhh---------------
Q 019861          234 AVHAGAA--IHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNL-I---PFSRLLRQN-MMQI---------------  291 (334)
Q Consensus       234 ~V~~~~v--l~h~~d~~~~L~~i~r~LkpgG~lii~~~~~~~~~~~-~---~~~~~~~~~-~~~~---------------  291 (334)
                      +|++..+  ++|..++..+|+++.++|+|||++++.+++....... .   .....++.. ....               
T Consensus       106 ~v~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  185 (227)
T 1ve3_A          106 YVIFIDSIVHFEPLELNQVFKEVRRVLKPSGKFIMYFTDLRELLPRLKESLVVGQKYWISKVIPDQEERTVVIEFKSEQD  185 (227)
T ss_dssp             EEEEESCGGGCCHHHHHHHHHHHHHHEEEEEEEEEEEECHHHHGGGCCC---------CCEEEEETTTTEEEEEC-----
T ss_pred             EEEEcCchHhCCHHHHHHHHHHHHHHcCCCcEEEEEecChHHHHHHHHhhhhcccceeecccccCccccEEEEEeccchh
Confidence            9999999  5555678899999999999999999998874211000 0   000000000 0000               


Q ss_pred             --cCccCCCCHHHHHHHHHhCCCcEEEEeecCcE-EEEEE
Q 019861          292 --SGSYTFLSEREIEDLCRACGLVDFKCTRNRGF-VMFTA  328 (334)
Q Consensus       292 --~~~~~~~t~~~l~~ll~~~Gf~~v~~~~~g~~-~~~~a  328 (334)
                        ..+...+.. ++.++|+++||+.++....+.+ +++..
T Consensus       186 ~~~~~~~~w~~-~~~~~l~~~GF~~v~~~~~~~~~~~i~~  224 (227)
T 1ve3_A          186 SFRVRFNVWGK-TGVELLAKLYFTKEAEEKVGNYSYLTVY  224 (227)
T ss_dssp             CCEEEEECCCH-HHHHHHHTTTEEEEEEEEETTTEEEEEE
T ss_pred             hheeehhhhch-HHHHHHHHHhhhHHHHHHhCCceeEEee
Confidence              001223334 7899999999999997766644 44433

>3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora}

Probab=99.70  E-value=1.3e-16  Score=147.91  Aligned_cols=156  Identities=15%  Similarity=0.122  Sum_probs=111.4

Q ss_pred             HHHcccCCCCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhc------------C--CCCCCCCce
Q 019861          168 LMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQ------------E--SNFPKDSID  233 (334)
Q Consensus       168 ~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~------------~--~~~~~~~fD  233 (334)
                      .+.+.+...++.+|||||||+|.++..+++.++..+++++|+ +.++.  +++...            +  .+++  +||
T Consensus       175 ~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~--~~~~~~~~~~~~v~~~~~d~~~~~p--~~D  249 (348)
T 3lst_A          175 ILARAGDFPATGTVADVGGGRGGFLLTVLREHPGLQGVLLDR-AEVVA--RHRLDAPDVAGRWKVVEGDFLREVP--HAD  249 (348)
T ss_dssp             HHHHHSCCCSSEEEEEETCTTSHHHHHHHHHCTTEEEEEEEC-HHHHT--TCCCCCGGGTTSEEEEECCTTTCCC--CCS
T ss_pred             HHHHhCCccCCceEEEECCccCHHHHHHHHHCCCCEEEEecC-HHHhh--cccccccCCCCCeEEEecCCCCCCC--CCc
Confidence            444555555678999999999999999999988888999999 44444  211110            0  1233  899


Q ss_pred             EEEeCccccCCCCH--HHHHHHHHHcccCCcEEEEEEeccCCCCCchHHHHHHHHHhhhhcCccCCCCHHHHHHHHHhCC
Q 019861          234 AVHAGAAIHCWSSP--STGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLCRACG  311 (334)
Q Consensus       234 ~V~~~~vl~h~~d~--~~~L~~i~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~l~~ll~~~G  311 (334)
                      +|++.++|||++++  ..+|++++++|||||++++.+...+..... .....+...... ......++.++|.++++++|
T Consensus       250 ~v~~~~vlh~~~d~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~-~~~~~~d~~~~~-~~~~~~~t~~e~~~ll~~aG  327 (348)
T 3lst_A          250 VHVLKRILHNWGDEDSVRILTNCRRVMPAHGRVLVIDAVVPEGNDA-HQSKEMDFMMLA-ARTGQERTAAELEPLFTAAG  327 (348)
T ss_dssp             EEEEESCGGGSCHHHHHHHHHHHHHTCCTTCEEEEEECCBCSSSSC-CHHHHHHHHHHH-TTSCCCCBHHHHHHHHHHTT
T ss_pred             EEEEehhccCCCHHHHHHHHHHHHHhcCCCCEEEEEEeccCCCCCc-chhhhcChhhhh-cCCCcCCCHHHHHHHHHHCC
Confidence            99999999999988  699999999999999999998876543211 111111111111 23456789999999999999


Q ss_pred             CcEEEEeec-CcEEEEEEEc
Q 019861          312 LVDFKCTRN-RGFVMFTATK  330 (334)
Q Consensus       312 f~~v~~~~~-g~~~~~~a~K  330 (334)
                      |++++.... +...++.+++
T Consensus       328 f~~~~~~~~~~~~~vie~~p  347 (348)
T 3lst_A          328 LRLDRVVGTSSVMSIAVGVP  347 (348)
T ss_dssp             EEEEEEEECSSSCEEEEEEE
T ss_pred             CceEEEEECCCCcEEEEEEe
Confidence            999987654 4455665554

>3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A*

Probab=99.69  E-value=1.9e-16  Score=143.51  Aligned_cols=150  Identities=15%  Similarity=0.167  Sum_probs=105.9

Q ss_pred             HHHHHcccCCCCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCC-----------------CCC
Q 019861          166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES-----------------NFP  228 (334)
Q Consensus       166 ~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~-----------------~~~  228 (334)
                      ...+...+... +.+|||||||+|.++..+++.+.  +|+|+|+++.+++.++++.....                 ++ 
T Consensus        72 ~~~~~~~~~~~-~~~vLDlGcG~G~~~~~l~~~~~--~v~gvD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~-  147 (299)
T 3g2m_A           72 AREFATRTGPV-SGPVLELAAGMGRLTFPFLDLGW--EVTALELSTSVLAAFRKRLAEAPADVRDRCTLVQGDMSAFAL-  147 (299)
T ss_dssp             HHHHHHHHCCC-CSCEEEETCTTTTTHHHHHTTTC--CEEEEESCHHHHHHHHHHHHTSCHHHHTTEEEEECBTTBCCC-
T ss_pred             HHHHHHhhCCC-CCcEEEEeccCCHHHHHHHHcCC--eEEEEECCHHHHHHHHHHHhhcccccccceEEEeCchhcCCc-
Confidence            34445555443 44999999999999999999875  89999999999999998865421                 23 


Q ss_pred             CCCceEEEeC-ccccCCCC--HHHHHHHHHHcccCCcEEEEEEeccCCC-----CCchHHHHHHHH---Hhh--------
Q 019861          229 KDSIDAVHAG-AAIHCWSS--PSTGVAEISRVLRPGGVFVGTTYIVDGP-----FNLIPFSRLLRQ---NMM--------  289 (334)
Q Consensus       229 ~~~fD~V~~~-~vl~h~~d--~~~~L~~i~r~LkpgG~lii~~~~~~~~-----~~~~~~~~~~~~---~~~--------  289 (334)
                      +++||+|++. .+++|+++  ...+|++++++|+|||++++.+++.+..     .....+......   ...        
T Consensus       148 ~~~fD~v~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  227 (299)
T 3g2m_A          148 DKRFGTVVISSGSINELDEADRRGLYASVREHLEPGGKFLLSLAMSEAAESEPLERKQELPGRSGRRYVLHVRHLPAEEI  227 (299)
T ss_dssp             SCCEEEEEECHHHHTTSCHHHHHHHHHHHHHHEEEEEEEEEEEECCHHHHSCCCCC-------------CCEEEEEEEEE
T ss_pred             CCCcCEEEECCcccccCCHHHHHHHHHHHHHHcCCCcEEEEEeecCccccccchhccceeecCCCcEEEEEEEEeccccE
Confidence            6789999975 55666652  4789999999999999999999887421     000010000000   000        


Q ss_pred             ----------------hhcCccCCCCHHHHHHHHHhCCCcEEEEee
Q 019861          290 ----------------QISGSYTFLSEREIEDLCRACGLVDFKCTR  319 (334)
Q Consensus       290 ----------------~~~~~~~~~t~~~l~~ll~~~Gf~~v~~~~  319 (334)
                                      ....+.++|+.+++.++|+++||++++...
T Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~~~t~~el~~ll~~aGF~v~~~~~  273 (299)
T 3g2m_A          228 QEITIHPADETTDPFVVCTHRRRLLAPDQVVRELVRSGFDVIAQTP  273 (299)
T ss_dssp             EEEEEEESCC--CCCCEEEEEEEEECHHHHHHHHHHTTCEEEEEEE
T ss_pred             EEEEEEeccCCCCcEEEEEEEEEEeCHHHHHHHHHHCCCEEEEEEe
Confidence                            011234578999999999999999988643

>3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae}

Probab=99.69  E-value=3.8e-16  Score=141.54  Aligned_cols=149  Identities=15%  Similarity=0.176  Sum_probs=106.1

Q ss_pred             cHHHHHHHHcccCCCCCCcEEEECCCcCHHHHHHHHcC-CCCeEEEEeCCHHHHHHHHHHHhcC---C------------
Q 019861          162 PEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSG-LFSLVVALDYSENMLKQCYEFVQQE---S------------  225 (334)
Q Consensus       162 ~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~~v~giD~s~~~~~~a~~~~~~~---~------------  225 (334)
                      +....+.+..+.. .++.+|||||||+|.++..+++.. +..+|+|+|+|+.+++.++++....   .            
T Consensus        22 ~~~~~~~l~~~~~-~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~  100 (299)
T 3g5t_A           22 PSDFYKMIDEYHD-GERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKEGSPDTYKNVSFKISSSDD  100 (299)
T ss_dssp             CHHHHHHHHHHCC-SCCSEEEEETCTTTHHHHHHHHHSSCCSEEEEEESCHHHHHHHHHHHHHCC-CCTTEEEEECCTTC
T ss_pred             CHHHHHHHHHHhc-CCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHhccCCCCceEEEEcCHHh
Confidence            4556666666654 357899999999999999999753 5679999999999999999876442   1            


Q ss_pred             -CCCC------CCceEEEeCccccCCCCHHHHHHHHHHcccCCcEEEEEEec---cCCCCCchHHHHHHHHHhhhhcCcc
Q 019861          226 -NFPK------DSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYI---VDGPFNLIPFSRLLRQNMMQISGSY  295 (334)
Q Consensus       226 -~~~~------~~fD~V~~~~vl~h~~d~~~~L~~i~r~LkpgG~lii~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~  295 (334)
                       ++++      ++||+|++..+++|+ ++..+++++.++|+|||.+++.+..   .............+..........+
T Consensus       101 ~~~~~~~~~~~~~fD~V~~~~~l~~~-~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w  179 (299)
T 3g5t_A          101 FKFLGADSVDKQKIDMITAVECAHWF-DFEKFQRSAYANLRKDGTIAIWGYADPIFPDYPEFDDLMIEVPYGKQGLGPYW  179 (299)
T ss_dssp             CGGGCTTTTTSSCEEEEEEESCGGGS-CHHHHHHHHHHHEEEEEEEEEEEEEEEECTTCGGGTTHHHHHHHCTTTTGGGS
T ss_pred             CCccccccccCCCeeEEeHhhHHHHh-CHHHHHHHHHHhcCCCcEEEEEecCCccccCcHHHHHHHHHhccCcccccchh
Confidence             2334      799999999999999 9999999999999999999984433   2222222222222211100111111


Q ss_pred             CCCCHHHHHHHHHhCCC
Q 019861          296 TFLSEREIEDLCRACGL  312 (334)
Q Consensus       296 ~~~t~~~l~~ll~~~Gf  312 (334)
                      .....+.+.+++++.||
T Consensus       180 ~~p~~~~~~~~l~~~gf  196 (299)
T 3g5t_A          180 EQPGRSRLRNMLKDSHL  196 (299)
T ss_dssp             CTTHHHHHHTTTTTCCC
T ss_pred             hchhhHHHHHhhhccCC
Confidence            11356678999999999

>4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans}

Probab=99.69  E-value=4.9e-17  Score=144.29  Aligned_cols=106  Identities=30%  Similarity=0.436  Sum_probs=88.5

Q ss_pred             cHHHHHHHHcccCCCCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHh--------cCCCCCCCCce
Q 019861          162 PEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQ--------QESNFPKDSID  233 (334)
Q Consensus       162 ~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~--------~~~~~~~~~fD  233 (334)
                      |.++++.+..+.+.  +.+|||||||+|.++..|++.+.  +|+|+|+|+.|++.|++...        ...++++++||
T Consensus        26 p~~l~~~l~~~~~~--~~~vLDvGcGtG~~~~~l~~~~~--~v~gvD~s~~ml~~a~~~~~v~~~~~~~e~~~~~~~sfD  101 (257)
T 4hg2_A           26 PRALFRWLGEVAPA--RGDALDCGCGSGQASLGLAEFFE--RVHAVDPGEAQIRQALRHPRVTYAVAPAEDTGLPPASVD  101 (257)
T ss_dssp             CHHHHHHHHHHSSC--SSEEEEESCTTTTTHHHHHTTCS--EEEEEESCHHHHHTCCCCTTEEEEECCTTCCCCCSSCEE
T ss_pred             HHHHHHHHHHhcCC--CCCEEEEcCCCCHHHHHHHHhCC--EEEEEeCcHHhhhhhhhcCCceeehhhhhhhcccCCccc
Confidence            45666777776654  57999999999999999999876  99999999999998875311        12368899999


Q ss_pred             EEEeCccccCCCCHHHHHHHHHHcccCCcEEEEEEeccC
Q 019861          234 AVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVD  272 (334)
Q Consensus       234 ~V~~~~vl~h~~d~~~~L~~i~r~LkpgG~lii~~~~~~  272 (334)
                      +|++..++||+ ++..++++++|+|||||+|++......
T Consensus       102 ~v~~~~~~h~~-~~~~~~~e~~rvLkpgG~l~~~~~~~~  139 (257)
T 4hg2_A          102 VAIAAQAMHWF-DLDRFWAELRRVARPGAVFAAVTYGLT  139 (257)
T ss_dssp             EEEECSCCTTC-CHHHHHHHHHHHEEEEEEEEEEEECCC
T ss_pred             EEEEeeehhHh-hHHHHHHHHHHHcCCCCEEEEEECCCC
Confidence            99999999766 788999999999999999999887654

>3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A*

Probab=99.69  E-value=6.8e-16  Score=144.14  Aligned_cols=162  Identities=16%  Similarity=0.139  Sum_probs=115.9

Q ss_pred             HHHHcccC-CCCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHh-----c--CCCCCCCCceEEEeC
Q 019861          167 ELMKGYLK-PVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQ-----Q--ESNFPKDSIDAVHAG  238 (334)
Q Consensus       167 ~~l~~~l~-~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~-----~--~~~~~~~~fD~V~~~  238 (334)
                      ..+...+. ..+..+|||||||+|.++..+++.++..+++++|+ +.+++.+++.-.     .  ..+++++  |+|++.
T Consensus       192 ~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~d~~~~~p~~--D~v~~~  268 (368)
T 3reo_A          192 KKILEMYNGFEGLTTIVDVGGGTGAVASMIVAKYPSINAINFDL-PHVIQDAPAFSGVEHLGGDMFDGVPKG--DAIFIK  268 (368)
T ss_dssp             HHHHTTCCTTTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCCCTTEEEEECCTTTCCCCC--SEEEEE
T ss_pred             HHHHHhcccccCCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeh-HHHHHhhhhcCCCEEEecCCCCCCCCC--CEEEEe
Confidence            34444444 44568999999999999999999988889999999 888877764210     0  0145544  999999


Q ss_pred             ccccCCCCHH--HHHHHHHHcccCCcEEEEEEeccCCCCCchH--HHH-HHHHHhhhhcCccCCCCHHHHHHHHHhCCCc
Q 019861          239 AAIHCWSSPS--TGVAEISRVLRPGGVFVGTTYIVDGPFNLIP--FSR-LLRQNMMQISGSYTFLSEREIEDLCRACGLV  313 (334)
Q Consensus       239 ~vl~h~~d~~--~~L~~i~r~LkpgG~lii~~~~~~~~~~~~~--~~~-~~~~~~~~~~~~~~~~t~~~l~~ll~~~Gf~  313 (334)
                      ++|||++++.  .+|++++++|+|||++++.+...+.......  ... .+.............++.++|+++++++||+
T Consensus       269 ~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~rt~~e~~~ll~~AGF~  348 (368)
T 3reo_A          269 WICHDWSDEHCLKLLKNCYAALPDHGKVIVAEYILPPSPDPSIATKVVIHTDALMLAYNPGGKERTEKEFQALAMASGFR  348 (368)
T ss_dssp             SCGGGBCHHHHHHHHHHHHHHSCTTCEEEEEECCCCSSCCCCHHHHHHHHHHHHHHHHSSBCCCCCHHHHHHHHHHTTCC
T ss_pred             chhhcCCHHHHHHHHHHHHHHcCCCCEEEEEEeccCCCCCCchhhhHHHhhhHHHHhhcCCCccCCHHHHHHHHHHCCCe
Confidence            9999999765  7899999999999999999987653322111  111 1111122112245677999999999999999


Q ss_pred             EEEEee-cCcEEEEEEEcC
Q 019861          314 DFKCTR-NRGFVMFTATKP  331 (334)
Q Consensus       314 ~v~~~~-~g~~~~~~a~K~  331 (334)
                      +++... .+...++.+.|+
T Consensus       349 ~v~~~~~~~~~~vie~~k~  367 (368)
T 3reo_A          349 GFKVASCAFNTYVMEFLKT  367 (368)
T ss_dssp             EEEEEEEETTEEEEEEECC
T ss_pred             eeEEEEeCCCcEEEEEEeC
Confidence            998654 455666666664

>3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens}

Probab=99.69  E-value=1.8e-17  Score=149.98  Aligned_cols=137  Identities=16%  Similarity=0.178  Sum_probs=100.4

Q ss_pred             CCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCC-------------------------------
Q 019861          177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES-------------------------------  225 (334)
Q Consensus       177 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~-------------------------------  225 (334)
                      ++.+|||||||+|.++..++...+..+|+|+|+++.+++.|++++....                               
T Consensus        46 ~~~~VLDiGCG~G~~~~~la~~~~~~~v~gvDis~~~i~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  125 (292)
T 3g07_A           46 RGRDVLDLGCNVGHLTLSIACKWGPSRMVGLDIDSRLIHSARQNIRHYLSEELRLPPQTLEGDPGAEGEEGTTTVRKRSC  125 (292)
T ss_dssp             TTSEEEEESCTTCHHHHHHHHHTCCSEEEEEESCHHHHHHHHHTC-----------------------------------
T ss_pred             CCCcEEEeCCCCCHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHhhhhhhcccccccccccccccccccccccccccc
Confidence            5789999999999999999998656799999999999999997643210                               


Q ss_pred             ----------------------------------------------CCCCCCceEEEeCccccCCC------CHHHHHHH
Q 019861          226 ----------------------------------------------NFPKDSIDAVHAGAAIHCWS------SPSTGVAE  253 (334)
Q Consensus       226 ----------------------------------------------~~~~~~fD~V~~~~vl~h~~------d~~~~L~~  253 (334)
                                                                    ++.+++||+|++..+++|+.      ++..++++
T Consensus       126 ~p~~~~~~~g~~~~p~~~~~~~~~~~~p~~v~f~~~d~~~~~~~~~~~~~~~fD~I~~~~vl~~ihl~~~~~~~~~~l~~  205 (292)
T 3g07_A          126 FPASLTASRGPIAAPQVPLDGADTSVFPNNVVFVTGNYVLDRDDLVEAQTPEYDVVLCLSLTKWVHLNWGDEGLKRMFRR  205 (292)
T ss_dssp             ----------------CCSSTTCCSSTTTTEEEEECCCCCSSHHHHTTCCCCEEEEEEESCHHHHHHHHHHHHHHHHHHH
T ss_pred             ccchhhhccCccccccccccccccccccccceEEecccccCccccccccCCCcCEEEEChHHHHhhhcCCHHHHHHHHHH
Confidence                                                          13467999999999998875      67789999


Q ss_pred             HHHcccCCcEEEEEEeccCCCCCchHHHHHHHHHhhhhcCccCCCCHHHHHHHHHh--CCCcEEEEe
Q 019861          254 ISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLCRA--CGLVDFKCT  318 (334)
Q Consensus       254 i~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~l~~ll~~--~Gf~~v~~~  318 (334)
                      ++++|+|||++++.....................+.     ...+.++++.++|.+  +||+.++.+
T Consensus       206 ~~~~LkpGG~lil~~~~~~~y~~~~~~~~~~~~~~~-----~~~~~p~~~~~~L~~~~~GF~~~~~~  267 (292)
T 3g07_A          206 IYRHLRPGGILVLEPQPWSSYGKRKTLTETIYKNYY-----RIQLKPEQFSSYLTSPDVGFSSYELV  267 (292)
T ss_dssp             HHHHEEEEEEEEEECCCHHHHHTTTTSCHHHHHHHH-----HCCCCGGGHHHHHTSTTTCCCEEEEC
T ss_pred             HHHHhCCCcEEEEecCCchhhhhhhcccHHHHhhhh-----cEEEcHHHHHHHHHhcCCCceEEEEe
Confidence            999999999999976543211000000011111111     123458899999999  999887754

>2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A*

Probab=99.69  E-value=5e-16  Score=137.48  Aligned_cols=135  Identities=16%  Similarity=0.151  Sum_probs=100.9

Q ss_pred             HHHHHcccCCCCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhc-------------------CC-
Q 019861          166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQ-------------------ES-  225 (334)
Q Consensus       166 ~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~-------------------~~-  225 (334)
                      .+.+...+...++.+|||+|||+|..+..|++.|.  +|+|+|+|+.+++.|+++...                   .. 
T Consensus        57 ~~~~~~~~~~~~~~~vLD~GCG~G~~~~~La~~G~--~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~  134 (252)
T 2gb4_A           57 KKHLDTFLKGQSGLRVFFPLCGKAIEMKWFADRGH--TVVGVEISEIGIREFFAEQNLSYTEEPLAEIAGAKVFKSSSGS  134 (252)
T ss_dssp             HHHHHHHHTTCCSCEEEETTCTTCTHHHHHHHTTC--EEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSS
T ss_pred             HHHHHHhccCCCCCeEEEeCCCCcHHHHHHHHCCC--eEEEEECCHHHHHHHHHhcccccccccccccccccccccCCCc
Confidence            33443333334578999999999999999999987  999999999999999876531                   01 


Q ss_pred             -----------CCCC-CCceEEEeCccccCCCCH--HHHHHHHHHcccCCcEEEEEEeccCCCCCchHHHHHHHHHhhhh
Q 019861          226 -----------NFPK-DSIDAVHAGAAIHCWSSP--STGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQI  291 (334)
Q Consensus       226 -----------~~~~-~~fD~V~~~~vl~h~~d~--~~~L~~i~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~  291 (334)
                                 ++++ ++||+|++..+++|++.+  ..+++++.++|||||++++.+.......               .
T Consensus       135 i~~~~~D~~~l~~~~~~~FD~V~~~~~l~~l~~~~~~~~l~~~~~~LkpGG~l~l~~~~~~~~~---------------~  199 (252)
T 2gb4_A          135 ISLYCCSIFDLPRANIGKFDRIWDRGALVAINPGDHDRYADIILSLLRKEFQYLVAVLSYDPTK---------------H  199 (252)
T ss_dssp             EEEEESCTTTGGGGCCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEEEEEEEEEEEECCTTS---------------C
T ss_pred             eEEEECccccCCcccCCCEEEEEEhhhhhhCCHHHHHHHHHHHHHHcCCCeEEEEEEEecCCcc---------------C
Confidence                       1222 789999999999999743  5789999999999999987666543110               0


Q ss_pred             cCccCCCCHHHHHHHHHhCCCcEEEEe
Q 019861          292 SGSYTFLSEREIEDLCRACGLVDFKCT  318 (334)
Q Consensus       292 ~~~~~~~t~~~l~~ll~~~Gf~~v~~~  318 (334)
                      .+....++.+++.++++. +|+++...
T Consensus       200 ~g~~~~~~~~el~~~l~~-~f~v~~~~  225 (252)
T 2gb4_A          200 AGPPFYVPSAELKRLFGT-KCSMQCLE  225 (252)
T ss_dssp             CCSSCCCCHHHHHHHHTT-TEEEEEEE
T ss_pred             CCCCCCCCHHHHHHHhhC-CeEEEEEe
Confidence            112234799999999987 59887643

>2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus}

Probab=99.68  E-value=3.5e-17  Score=148.73  Aligned_cols=142  Identities=15%  Similarity=0.121  Sum_probs=99.9

Q ss_pred             CCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCC----------------------------CCC
Q 019861          177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES----------------------------NFP  228 (334)
Q Consensus       177 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~----------------------------~~~  228 (334)
                      ++.+|||||||+|..+..++..+ ..+|+|+|+|+.|++.|+++.....                            +++
T Consensus        48 ~~~~VLDlGCG~G~~l~~~~~~~-~~~v~GiD~S~~~l~~A~~~~~~~~~~~~~~~~~~~f~~~d~~~d~~~~~l~~~~~  126 (302)
T 2vdw_A           48 NKRKVLAIDFGNGADLEKYFYGE-IALLVATDPDADAIARGNERYNKLNSGIKTKYYKFDYIQETIRSDTFVSSVREVFY  126 (302)
T ss_dssp             SCCEEEETTCTTTTTHHHHHHTT-CSEEEEEESCHHHHHHHHHHHHHHCC----CCCEEEEEECCTTSSSHHHHHHTTCC
T ss_pred             CCCeEEEEecCCcHhHHHHHhcC-CCeEEEEECCHHHHHHHHHHHHhccccccccccccchhhhhcccchhhhhhhcccc
Confidence            46899999999998666665554 3499999999999999998754211                            245


Q ss_pred             CCCceEEEeCccccCC---CCHHHHHHHHHHcccCCcEEEEEEeccCCCCCchH-----HHHH--HHH-----------H
Q 019861          229 KDSIDAVHAGAAIHCW---SSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIP-----FSRL--LRQ-----------N  287 (334)
Q Consensus       229 ~~~fD~V~~~~vl~h~---~d~~~~L~~i~r~LkpgG~lii~~~~~~~~~~~~~-----~~~~--~~~-----------~  287 (334)
                      +++||+|+|..++||+   .+...+|++++++|||||++++.+++.+.......     ....  .+.           .
T Consensus       127 ~~~FD~V~~~~~lhy~~~~~~~~~~l~~~~r~LkpGG~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~  206 (302)
T 2vdw_A          127 FGKFNIIDWQFAIHYSFHPRHYATVMNNLSELTASGGKVLITTMDGDKLSKLTDKKTFIIHKNLPSSENYMSVEKIADDR  206 (302)
T ss_dssp             SSCEEEEEEESCGGGTCSTTTHHHHHHHHHHHEEEEEEEEEEEECHHHHTTCCSCEEEECCSSSCTTTSEEEECEEETTE
T ss_pred             CCCeeEEEECchHHHhCCHHHHHHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHhcCCcccccccccccceeeeccccccc
Confidence            6899999999999875   35579999999999999999999997532110000     0000  000           0


Q ss_pred             ---hhhh---cC-ccCCCCHHHHHHHHHhCCCcEEEEee
Q 019861          288 ---MMQI---SG-SYTFLSEREIEDLCRACGLVDFKCTR  319 (334)
Q Consensus       288 ---~~~~---~~-~~~~~t~~~l~~ll~~~Gf~~v~~~~  319 (334)
                         +...   .. ...+++.+++.++++++||++++...
T Consensus       207 ~~~~~~~~~~~~~~e~~v~~~el~~l~~~~Gl~lv~~~~  245 (302)
T 2vdw_A          207 IVVYNPSTMSTPMTEYIIKKNDIVRVFNEYGFVLVDNVD  245 (302)
T ss_dssp             EEEBCTTTBSSCEEEECCCHHHHHHHHHHTTEEEEEEEE
T ss_pred             cceeeccccCCCceeeeeEHHHHHHHHHHCCCEEEEecC
Confidence               0000   00 12367889999999999999988654

>1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A*

Probab=99.67  E-value=6.2e-16  Score=144.61  Aligned_cols=159  Identities=16%  Similarity=0.187  Sum_probs=113.0

Q ss_pred             HHHcccC-CCCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHh-----cC--CCCCCCCceEEEeCc
Q 019861          168 LMKGYLK-PVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQ-----QE--SNFPKDSIDAVHAGA  239 (334)
Q Consensus       168 ~l~~~l~-~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~-----~~--~~~~~~~fD~V~~~~  239 (334)
                      .+...+. ..++.+|||||||+|.++..+++.++...++++|+ +.+++.+++.-.     .+  .++++  ||+|++.+
T Consensus       199 ~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~v~~~~~d~~~~~~~--~D~v~~~~  275 (372)
T 1fp1_D          199 RMLEIYTGFEGISTLVDVGGGSGRNLELIISKYPLIKGINFDL-PQVIENAPPLSGIEHVGGDMFASVPQ--GDAMILKA  275 (372)
T ss_dssp             HHHHHCCTTTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCCCTTEEEEECCTTTCCCC--EEEEEEES
T ss_pred             HHHHHhhccCCCCEEEEeCCCCcHHHHHHHHHCCCCeEEEeCh-HHHHHhhhhcCCCEEEeCCcccCCCC--CCEEEEec
Confidence            3334443 34568999999999999999999988789999999 888887764210     00  13333  99999999


Q ss_pred             cccCCCCHH--HHHHHHHHcccCCcEEEEEEeccCCCCCch--H-HHHHHHHHhhhhcCccCCCCHHHHHHHHHhCCCcE
Q 019861          240 AIHCWSSPS--TGVAEISRVLRPGGVFVGTTYIVDGPFNLI--P-FSRLLRQNMMQISGSYTFLSEREIEDLCRACGLVD  314 (334)
Q Consensus       240 vl~h~~d~~--~~L~~i~r~LkpgG~lii~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~t~~~l~~ll~~~Gf~~  314 (334)
                      +|||++++.  .+|++++++|+|||++++.++..+......  . ....+...... ..+...++.++|.++++++||++
T Consensus       276 ~lh~~~d~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~~~t~~e~~~ll~~aGf~~  354 (372)
T 1fp1_D          276 VCHNWSDEKCIEFLSNCHKALSPNGKVIIVEFILPEEPNTSEESKLVSTLDNLMFI-TVGGRERTEKQYEKLSKLSGFSK  354 (372)
T ss_dssp             SGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEECSSCCSSHHHHHHHHHHHHHHH-HHSCCCEEHHHHHHHHHHTTCSE
T ss_pred             ccccCCHHHHHHHHHHHHHhcCCCCEEEEEEeccCCCCccchHHHHHHHhhHHHHh-ccCCccCCHHHHHHHHHHCCCce
Confidence            999999988  999999999999999999987764332111  0 11111111111 11235679999999999999999


Q ss_pred             EEEee--cCcEEEEEEEc
Q 019861          315 FKCTR--NRGFVMFTATK  330 (334)
Q Consensus       315 v~~~~--~g~~~~~~a~K  330 (334)
                      ++...  .+.+.++.++|
T Consensus       355 ~~~~~~~~~~~~vie~~~  372 (372)
T 1fp1_D          355 FQVACRAFNSLGVMEFYK  372 (372)
T ss_dssp             EEEEEEETTTEEEEEEEC
T ss_pred             EEEEEcCCCCeEEEEEeC
Confidence            88654  34356766654

>2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A

Probab=99.67  E-value=3.9e-17  Score=139.30  Aligned_cols=123  Identities=17%  Similarity=0.157  Sum_probs=97.5

Q ss_pred             CCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcC-------------CCCCCCCceEEEeCccccCC
Q 019861          178 GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQE-------------SNFPKDSIDAVHAGAAIHCW  244 (334)
Q Consensus       178 ~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~-------------~~~~~~~fD~V~~~~vl~h~  244 (334)
                      + +|||||||+|.++..+++.+.  +++|+|+++.+++.++++....             .++++++||+|++..  .|+
T Consensus        31 ~-~vLdiGcG~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~--~~~  105 (202)
T 2kw5_A           31 G-KILCLAEGEGRNACFLASLGY--EVTAVDQSSVGLAKAKQLAQEKGVKITTVQSNLADFDIVADAWEGIVSIF--CHL  105 (202)
T ss_dssp             S-EEEECCCSCTHHHHHHHTTTC--EEEEECSSHHHHHHHHHHHHHHTCCEEEECCBTTTBSCCTTTCSEEEEEC--CCC
T ss_pred             C-CEEEECCCCCHhHHHHHhCCC--eEEEEECCHHHHHHHHHHHHhcCCceEEEEcChhhcCCCcCCccEEEEEh--hcC
Confidence            5 999999999999999998865  9999999999999999876421             135578999999954  455


Q ss_pred             C--CHHHHHHHHHHcccCCcEEEEEEeccCCCCCchHHHHHHHHHhhhhcCccCCCCHHHHHHHHHhCCCcEEEE
Q 019861          245 S--SPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLCRACGLVDFKC  317 (334)
Q Consensus       245 ~--d~~~~L~~i~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~l~~ll~~~Gf~~v~~  317 (334)
                      .  ++..+|+++.++|+|||.+++.+++.....    +      .......+..+++.+++.++++  ||++++.
T Consensus       106 ~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~----~------~~~~~~~~~~~~~~~~l~~~l~--Gf~v~~~  168 (202)
T 2kw5_A          106 PSSLRQQLYPKVYQGLKPGGVFILEGFAPEQLQ----Y------NTGGPKDLDLLPKLETLQSELP--SLNWLIA  168 (202)
T ss_dssp             CHHHHHHHHHHHHTTCCSSEEEEEEEECTTTGG----G------TSCCSSSGGGCCCHHHHHHHCS--SSCEEEE
T ss_pred             CHHHHHHHHHHHHHhcCCCcEEEEEEecccccc----C------CCCCCCcceeecCHHHHHHHhc--CceEEEE
Confidence            3  667899999999999999999999865321    0      0111123567899999999999  9998873

>2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca}

Probab=99.67  E-value=1.9e-15  Score=135.35  Aligned_cols=134  Identities=16%  Similarity=0.113  Sum_probs=102.5

Q ss_pred             CCCcEEEECCCc---CHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCC-------C----------------CCCC
Q 019861          177 LGGNIIDASCGS---GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES-------N----------------FPKD  230 (334)
Q Consensus       177 ~~~~vLDiGcG~---G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~-------~----------------~~~~  230 (334)
                      ...+|||||||+   |.++..+.+..+..+|+|+|+|+.|++.+++++....       .                ++..
T Consensus        77 ~~~~vLDlGcG~pt~G~~~~~~~~~~p~~~v~~vD~sp~~l~~Ar~~~~~~~~v~~~~~D~~~~~~~~~~~~~~~~~d~~  156 (274)
T 2qe6_A           77 GISQFLDLGSGLPTVQNTHEVAQSVNPDARVVYVDIDPMVLTHGRALLAKDPNTAVFTADVRDPEYILNHPDVRRMIDFS  156 (274)
T ss_dssp             CCCEEEEETCCSCCSSCHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHTTCTTEEEEECCTTCHHHHHHSHHHHHHCCTT
T ss_pred             CCCEEEEECCCCCCCChHHHHHHHhCCCCEEEEEECChHHHHHHHHhcCCCCCeEEEEeeCCCchhhhccchhhccCCCC
Confidence            347999999999   9888877777777799999999999999998874321       1                2225


Q ss_pred             CceEEEeCccccCCCC--HHHHHHHHHHcccCCcEEEEEEeccCCCCCchHHHHHHHHHhhhhcCccCCCCHHHHHHHHH
Q 019861          231 SIDAVHAGAAIHCWSS--PSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLCR  308 (334)
Q Consensus       231 ~fD~V~~~~vl~h~~d--~~~~L~~i~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~l~~ll~  308 (334)
                      +||+|++..+|||+++  +..+|++++++|+|||+|++.+...+. .   .........+........+++.+++.+++ 
T Consensus       157 ~~d~v~~~~vlh~~~d~~~~~~l~~~~~~L~pGG~l~i~~~~~~~-~---~~~~~~~~~~~~~~~~~~~~s~~ei~~~l-  231 (274)
T 2qe6_A          157 RPAAIMLVGMLHYLSPDVVDRVVGAYRDALAPGSYLFMTSLVDTG-L---PAQQKLARITRENLGEGWARTPEEIERQF-  231 (274)
T ss_dssp             SCCEEEETTTGGGSCTTTHHHHHHHHHHHSCTTCEEEEEEEBCSS-C---HHHHHHHHHHHHHHSCCCCBCHHHHHHTT-
T ss_pred             CCEEEEEechhhhCCcHHHHHHHHHHHHhCCCCcEEEEEEecCcc-h---HHHHHHHHHHHhcCCCCccCCHHHHHHHh-
Confidence            7999999999999997  889999999999999999999988643 1   11112222222212245678999999999 


Q ss_pred             hCCCcEEE
Q 019861          309 ACGLVDFK  316 (334)
Q Consensus       309 ~~Gf~~v~  316 (334)
                       .||++++
T Consensus       232 -~G~~l~~  238 (274)
T 2qe6_A          232 -GDFELVE  238 (274)
T ss_dssp             -TTCEECT
T ss_pred             -CCCeEcc
Confidence             5998765

>3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A*

Probab=99.66  E-value=1.6e-15  Score=141.45  Aligned_cols=160  Identities=19%  Similarity=0.132  Sum_probs=114.3

Q ss_pred             HHHcccC-CCCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHh-----c--CCCCCCCCceEEEeCc
Q 019861          168 LMKGYLK-PVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQ-----Q--ESNFPKDSIDAVHAGA  239 (334)
Q Consensus       168 ~l~~~l~-~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~-----~--~~~~~~~~fD~V~~~~  239 (334)
                      .+...+. ..+..+|||||||+|.++..+++..+..+++++|+ +.+++.+++.-.     .  ..+++++  |+|++.+
T Consensus       191 ~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~D~~~~~p~~--D~v~~~~  267 (364)
T 3p9c_A          191 KLLELYHGFEGLGTLVDVGGGVGATVAAIAAHYPTIKGVNFDL-PHVISEAPQFPGVTHVGGDMFKEVPSG--DTILMKW  267 (364)
T ss_dssp             HHHHHCCTTTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCCCTTEEEEECCTTTCCCCC--SEEEEES
T ss_pred             HHHHhcccccCCCEEEEeCCCCCHHHHHHHHHCCCCeEEEecC-HHHHHhhhhcCCeEEEeCCcCCCCCCC--CEEEehH
Confidence            3444444 44568999999999999999999988889999999 888877764210     0  0145544  9999999


Q ss_pred             cccCCCCH--HHHHHHHHHcccCCcEEEEEEeccCCCCCchHH--H-HHHHHHhhhhcCccCCCCHHHHHHHHHhCCCcE
Q 019861          240 AIHCWSSP--STGVAEISRVLRPGGVFVGTTYIVDGPFNLIPF--S-RLLRQNMMQISGSYTFLSEREIEDLCRACGLVD  314 (334)
Q Consensus       240 vl~h~~d~--~~~L~~i~r~LkpgG~lii~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~t~~~l~~ll~~~Gf~~  314 (334)
                      +|||++++  ..+|++++++|+|||++++.+...+........  . ..+...+.........++.++|.++++++||++
T Consensus       268 vlh~~~d~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~g~~rt~~e~~~ll~~AGF~~  347 (364)
T 3p9c_A          268 ILHDWSDQHCATLLKNCYDALPAHGKVVLVQCILPVNPEANPSSQGVFHVDMIMLAHNPGGRERYEREFQALARGAGFTG  347 (364)
T ss_dssp             CGGGSCHHHHHHHHHHHHHHSCTTCEEEEEECCBCSSCCSSHHHHHHHHHHHHHHHHCSSCCCCBHHHHHHHHHHTTCCE
T ss_pred             HhccCCHHHHHHHHHHHHHHcCCCCEEEEEEeccCCCCCcchhhhhHHHhHHHHHhcccCCccCCHHHHHHHHHHCCCce
Confidence            99999866  488999999999999999998876543221111  1 111111221123456679999999999999999


Q ss_pred             EEEee-cCcEEEEEEEc
Q 019861          315 FKCTR-NRGFVMFTATK  330 (334)
Q Consensus       315 v~~~~-~g~~~~~~a~K  330 (334)
                      ++... .+...++.+.|
T Consensus       348 v~~~~~~~~~~vie~~k  364 (364)
T 3p9c_A          348 VKSTYIYANAWAIEFTK  364 (364)
T ss_dssp             EEEEEEETTEEEEEEEC
T ss_pred             EEEEEcCCceEEEEEeC
Confidence            98654 45566666654

>3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae}

Probab=99.66  E-value=9.5e-16  Score=137.94  Aligned_cols=137  Identities=16%  Similarity=0.173  Sum_probs=106.1

Q ss_pred             CCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCC-------------CCCCCCceEEEeCccccC
Q 019861          177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES-------------NFPKDSIDAVHAGAAIHC  243 (334)
Q Consensus       177 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~-------------~~~~~~fD~V~~~~vl~h  243 (334)
                      ++.+|||+|||+|.++..+++.+.  +|+|+|+++.+++.++++.....             ++ +++||+|++..+++|
T Consensus       120 ~~~~vLD~GcG~G~~~~~l~~~g~--~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~-~~~fD~i~~~~~~~~  196 (286)
T 3m70_A          120 SPCKVLDLGCGQGRNSLYLSLLGY--DVTSWDHNENSIAFLNETKEKENLNISTALYDINAANI-QENYDFIVSTVVFMF  196 (286)
T ss_dssp             CSCEEEEESCTTCHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCGGGCCC-CSCEEEEEECSSGGG
T ss_pred             CCCcEEEECCCCCHHHHHHHHCCC--eEEEEECCHHHHHHHHHHHHHcCCceEEEEeccccccc-cCCccEEEEccchhh
Confidence            578999999999999999999975  99999999999999998765332             12 678999999999999


Q ss_pred             CCCH--HHHHHHHHHcccCCcEEEEEEeccCCCCCchHHHHHHHHHhhhhcCccCCCCHHHHHHHHHhCCCcEEEEeec-
Q 019861          244 WSSP--STGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLCRACGLVDFKCTRN-  320 (334)
Q Consensus       244 ~~d~--~~~L~~i~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~l~~ll~~~Gf~~v~~~~~-  320 (334)
                      ++++  ..+|+++.++|+|||.+++...........             .......++.+++.++++.  |+++..... 
T Consensus       197 ~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~-------------~~~~~~~~~~~~l~~~~~~--~~~~~~~~~~  261 (286)
T 3m70_A          197 LNRERVPSIIKNMKEHTNVGGYNLIVAAMSTDDVPC-------------PLPFSFTFAENELKEYYKD--WEFLEYNENM  261 (286)
T ss_dssp             SCGGGHHHHHHHHHHTEEEEEEEEEEEEBCCSSSCC-------------SSCCSCCBCTTHHHHHTTT--SEEEEEECCE
T ss_pred             CCHHHHHHHHHHHHHhcCCCcEEEEEEecCCCCCCC-------------CCCccccCCHHHHHHHhcC--CEEEEEEccC
Confidence            9755  489999999999999988877654321111             1123457789999999865  877764211 


Q ss_pred             ---------C-----cEEEEEEEcC
Q 019861          321 ---------R-----GFVMFTATKP  331 (334)
Q Consensus       321 ---------g-----~~~~~~a~K~  331 (334)
                               |     .+..++|+||
T Consensus       262 ~~~~~~~~~g~~~~~~~~~l~arK~  286 (286)
T 3m70_A          262 GELHKTDENGNRIKMKFATMLARKK  286 (286)
T ss_dssp             EEEEEECSSCCEEEEEEEEEEEECC
T ss_pred             CeeeeccCCCCEEEEEEEEEEEecC
Confidence                     2     3667778886

>1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43

Probab=99.65  E-value=3.6e-15  Score=131.49  Aligned_cols=158  Identities=22%  Similarity=0.242  Sum_probs=108.9

Q ss_pred             cccCCCCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCC-------------CCCCCCceEEEe
Q 019861          171 GYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES-------------NFPKDSIDAVHA  237 (334)
Q Consensus       171 ~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~-------------~~~~~~fD~V~~  237 (334)
                      ......++.+|||+|||+|.++..+++.+.  +++|+|+|+.+++.++++.....             ++ .++||+|++
T Consensus        35 ~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~--~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~-~~~fD~v~~  111 (252)
T 1wzn_A           35 KEDAKREVRRVLDLACGTGIPTLELAERGY--EVVGLDLHEEMLRVARRKAKERNLKIEFLQGDVLEIAF-KNEFDAVTM  111 (252)
T ss_dssp             HHTCSSCCCEEEEETCTTCHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTTCCCEEEESCGGGCCC-CSCEEEEEE
T ss_pred             HHhcccCCCEEEEeCCCCCHHHHHHHHCCC--eEEEEECCHHHHHHHHHHHHhcCCceEEEECChhhccc-CCCccEEEE
Confidence            333444578999999999999999999865  99999999999999998765321             22 368999998


Q ss_pred             Cc-cccCCC--CHHHHHHHHHHcccCCcEEEEEEeccCCCC---C-------------------chHHHHHHH-----HH
Q 019861          238 GA-AIHCWS--SPSTGVAEISRVLRPGGVFVGTTYIVDGPF---N-------------------LIPFSRLLR-----QN  287 (334)
Q Consensus       238 ~~-vl~h~~--d~~~~L~~i~r~LkpgG~lii~~~~~~~~~---~-------------------~~~~~~~~~-----~~  287 (334)
                      .. +++|+.  ++..+|+++.++|+|||.+++..++.....   .                   ..+......     ..
T Consensus       112 ~~~~~~~~~~~~~~~~l~~~~~~L~pgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  191 (252)
T 1wzn_A          112 FFSTIMYFDEEDLRKLFSKVAEALKPGGVFITDFPCWFYGGRDGPVVWNEQKGEEKLVIMDWREVEPAVQKLRFKRLVQI  191 (252)
T ss_dssp             CSSGGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEC-------CCEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEEEE
T ss_pred             cCCchhcCCHHHHHHHHHHHHHHcCCCeEEEEeccchhcccCCCCeeeeccCCCeeEEEEeecccccccceeeheeeeee
Confidence            74 455554  456899999999999999999877631000   0                   000000000     00


Q ss_pred             hhh--------hcCccCCCCHHHHHHHHHhCCCcEEEEeec--------CcEEEEEEEcCC
Q 019861          288 MMQ--------ISGSYTFLSEREIEDLCRACGLVDFKCTRN--------RGFVMFTATKPS  332 (334)
Q Consensus       288 ~~~--------~~~~~~~~t~~~l~~ll~~~Gf~~v~~~~~--------g~~~~~~a~K~~  332 (334)
                      ...        ...+.++++.++++ +|+++||++++....        ...++++++|++
T Consensus       192 ~~~~g~~~~~~~~~~~~~~~~~e~~-~l~~aGF~~~~~~~~~~~~~~~~~~r~~~va~k~~  251 (252)
T 1wzn_A          192 LRPNGEVKAFLVDDELNIYTPREVR-LLAEKYFEKVKIYGNLKRELSPNDMRYWIVGIAKS  251 (252)
T ss_dssp             ECTTSCEEEEEEEEEEECCCHHHHH-HHHTTTSSEEEEEETTBSSCCTTCCEEEEEEECCC
T ss_pred             cccCCceeEEEEeeeeeeecHHHHH-HHHHhcCceeeeecccccccCCCCceEEEEEEeec
Confidence            000        01245789999997 899999999886432        357888888864

>1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A*

Probab=99.65  E-value=7.5e-16  Score=139.00  Aligned_cols=136  Identities=19%  Similarity=0.231  Sum_probs=103.7

Q ss_pred             CCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCC---------------CC-CCCCceEEEeCc
Q 019861          176 VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES---------------NF-PKDSIDAVHAGA  239 (334)
Q Consensus       176 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~---------------~~-~~~~fD~V~~~~  239 (334)
                      .++.+|||||||+|.++..++..+ ..+++|+|+++.+++.++++.....               ++ ++++||+|++..
T Consensus        63 ~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~~~  141 (298)
T 1ri5_A           63 KRGDSVLDLGCGKGGDLLKYERAG-IGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHMDLGKEFDVISSQF  141 (298)
T ss_dssp             CTTCEEEEETCTTTTTHHHHHHHT-CSEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSCCCCSSCEEEEEEES
T ss_pred             CCCCeEEEECCCCCHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHhcCCCccEEEEECCccccccCCCCCcCEEEECc
Confidence            347899999999999999888875 4599999999999999998865321               34 477899999999


Q ss_pred             cccC----CCCHHHHHHHHHHcccCCcEEEEEEeccCCCCCchHHHHHHHHH------------------------hh--
Q 019861          240 AIHC----WSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQN------------------------MM--  289 (334)
Q Consensus       240 vl~h----~~d~~~~L~~i~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~------------------------~~--  289 (334)
                      +++|    ..++..+|+++.++|+|||++++.+++...      ....+...                        +.  
T Consensus       142 ~l~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  215 (298)
T 1ri5_A          142 SFHYAFSTSESLDIAQRNIARHLRPGGYFIMTVPSRDV------ILERYKQGRMSNDFYKIELEKMEDVPMESVREYRFT  215 (298)
T ss_dssp             CGGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEECHHH------HHHHHHHTCCBCSSEEEECCCCSSCCTTTCCEEEEE
T ss_pred             hhhhhcCCHHHHHHHHHHHHHhcCCCCEEEEEECCHHH------HHHHHccCccCCeeEEEEeCccccccccccceEEEE
Confidence            9977    456789999999999999999999987521      11100000                        00  


Q ss_pred             --h--hcCccCCCCHHHHHHHHHhCCCcEEEEe
Q 019861          290 --Q--ISGSYTFLSEREIEDLCRACGLVDFKCT  318 (334)
Q Consensus       290 --~--~~~~~~~~t~~~l~~ll~~~Gf~~v~~~  318 (334)
                        .  ...+.++++.+++.++++++||++++..
T Consensus       216 l~~~~~~~~~~~~~~~~l~~ll~~aGf~~v~~~  248 (298)
T 1ri5_A          216 LLDSVNNCIEYFVDFTRMVDGFKRLGLSLVERK  248 (298)
T ss_dssp             ETTSCSSEEEECCCHHHHHHHHHTTTEEEEEEE
T ss_pred             EchhhcCCcccccCHHHHHHHHHHcCCEEEEec
Confidence              0  0012357899999999999999998854

>3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp}

Probab=99.65  E-value=1.3e-15  Score=130.17  Aligned_cols=125  Identities=14%  Similarity=0.077  Sum_probs=103.6

Q ss_pred             CCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCC------------CCCCCCceEEEeCccccCC
Q 019861          177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES------------NFPKDSIDAVHAGAAIHCW  244 (334)
Q Consensus       177 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~------------~~~~~~fD~V~~~~vl~h~  244 (334)
                      ++.+|||+|||+|.++..+++.+ ..+++|+|+++.+++.++++.....            .+.+++||+|++...++++
T Consensus        60 ~~~~vLDiG~G~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~fD~i~~~~~~~~~  138 (205)
T 3grz_A           60 KPLTVADVGTGSGILAIAAHKLG-AKSVLATDISDESMTAAEENAALNGIYDIALQKTSLLADVDGKFDLIVANILAEIL  138 (205)
T ss_dssp             SCCEEEEETCTTSHHHHHHHHTT-CSEEEEEESCHHHHHHHHHHHHHTTCCCCEEEESSTTTTCCSCEEEEEEESCHHHH
T ss_pred             CCCEEEEECCCCCHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHcCCCceEEEeccccccCCCCceEEEECCcHHHH
Confidence            47899999999999999988864 4699999999999999998865321            2446899999999888764


Q ss_pred             CCHHHHHHHHHHcccCCcEEEEEEeccCCCCCchHHHHHHHHHhhhhcCccCCCCHHHHHHHHHhCCCcEEEEeecCcEE
Q 019861          245 SSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLCRACGLVDFKCTRNRGFV  324 (334)
Q Consensus       245 ~d~~~~L~~i~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~l~~ll~~~Gf~~v~~~~~g~~~  324 (334)
                         ..+++++.++|+|||++++.+....                          +.+++.++++++||++++....+.|.
T Consensus       139 ---~~~l~~~~~~L~~gG~l~~~~~~~~--------------------------~~~~~~~~~~~~Gf~~~~~~~~~~w~  189 (205)
T 3grz_A          139 ---LDLIPQLDSHLNEDGQVIFSGIDYL--------------------------QLPKIEQALAENSFQIDLKMRAGRWI  189 (205)
T ss_dssp             ---HHHGGGSGGGEEEEEEEEEEEEEGG--------------------------GHHHHHHHHHHTTEEEEEEEEETTEE
T ss_pred             ---HHHHHHHHHhcCCCCEEEEEecCcc--------------------------cHHHHHHHHHHcCCceEEeeccCCEE
Confidence               6789999999999999999766532                          46789999999999999988777777


Q ss_pred             EEEEEcC
Q 019861          325 MFTATKP  331 (334)
Q Consensus       325 ~~~a~K~  331 (334)
                      .++.+++
T Consensus       190 ~~~~~~~  196 (205)
T 3grz_A          190 GLAISRK  196 (205)
T ss_dssp             EEEEEEC
T ss_pred             EEEEecc
Confidence            6666654

>3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413}

Probab=99.65  E-value=1.7e-15  Score=133.05  Aligned_cols=134  Identities=14%  Similarity=0.062  Sum_probs=101.9

Q ss_pred             CCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCC------CCCC----------CCceEEEeCc
Q 019861          176 VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES------NFPK----------DSIDAVHAGA  239 (334)
Q Consensus       176 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~------~~~~----------~~fD~V~~~~  239 (334)
                      .++.+|||||||+|.++..+++.++  +|+|+|+|+.+++.++++.....      .+.+          ..||+|++..
T Consensus        55 ~~~~~vLD~GcG~G~~~~~la~~~~--~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~d~v~~~~  132 (245)
T 3ggd_A           55 NPELPLIDFACGNGTQTKFLSQFFP--RVIGLDVSKSALEIAAKENTAANISYRLLDGLVPEQAAQIHSEIGDANIYMRT  132 (245)
T ss_dssp             CTTSCEEEETCTTSHHHHHHHHHSS--CEEEEESCHHHHHHHHHHSCCTTEEEEECCTTCHHHHHHHHHHHCSCEEEEES
T ss_pred             CCCCeEEEEcCCCCHHHHHHHHhCC--CEEEEECCHHHHHHHHHhCcccCceEEECcccccccccccccccCccEEEEcc
Confidence            4578999999999999999999987  99999999999999998764221      1111          2489999999


Q ss_pred             cccCCC--CHHHHHHHHHHcccCCcEEEEEEeccCCCCCchHHHHHHHHH----------hhhhcCccCCCCHHHHHHHH
Q 019861          240 AIHCWS--SPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQN----------MMQISGSYTFLSEREIEDLC  307 (334)
Q Consensus       240 vl~h~~--d~~~~L~~i~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~t~~~l~~ll  307 (334)
                      +++|++  ++..+|++++++|||||++++.++....    ..+.......          ..........++.+++.+++
T Consensus       133 ~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  208 (245)
T 3ggd_A          133 GFHHIPVEKRELLGQSLRILLGKQGAMYLIELGTGC----IDFFNSLLEKYGQLPYELLLVMEHGIRPGIFTAEDIELYF  208 (245)
T ss_dssp             SSTTSCGGGHHHHHHHHHHHHTTTCEEEEEEECTTH----HHHHHHHHHHHSSCCHHHHHHHTTTCCCCCCCHHHHHHHC
T ss_pred             hhhcCCHHHHHHHHHHHHHHcCCCCEEEEEeCCccc----cHHHHHHHhCCCCCchhhhhccccCCCCCccCHHHHHHHh
Confidence            999999  7889999999999999999998886532    1222111111          11111123457999999999


Q ss_pred             HhCCCcEEEE
Q 019861          308 RACGLVDFKC  317 (334)
Q Consensus       308 ~~~Gf~~v~~  317 (334)
                        +||++++.
T Consensus       209 --aGf~~~~~  216 (245)
T 3ggd_A          209 --PDFEILSQ  216 (245)
T ss_dssp             --TTEEEEEE
T ss_pred             --CCCEEEec
Confidence              99999874

>2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum}

Probab=99.65  E-value=3.7e-16  Score=133.73  Aligned_cols=139  Identities=18%  Similarity=0.219  Sum_probs=100.4

Q ss_pred             CCCCcEEEECCCcCHH-HHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcC-------------CCCCCCCceEEEeCccc
Q 019861          176 VLGGNIIDASCGSGLF-SRIFAKSGLFSLVVALDYSENMLKQCYEFVQQE-------------SNFPKDSIDAVHAGAAI  241 (334)
Q Consensus       176 ~~~~~vLDiGcG~G~~-~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~-------------~~~~~~~fD~V~~~~vl  241 (334)
                      .++.+|||+|||+|.+ ...++..+.  +++|+|+|+.+++.++++....             .++++++||+|++..++
T Consensus        22 ~~~~~vLDiGcG~G~~~~~~~~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l   99 (209)
T 2p8j_A           22 NLDKTVLDCGAGGDLPPLSIFVEDGY--KTYGIEISDLQLKKAENFSRENNFKLNISKGDIRKLPFKDESMSFVYSYGTI   99 (209)
T ss_dssp             SSCSEEEEESCCSSSCTHHHHHHTTC--EEEEEECCHHHHHHHHHHHHHHTCCCCEEECCTTSCCSCTTCEEEEEECSCG
T ss_pred             CCCCEEEEECCCCCHHHHHHHHhCCC--EEEEEECCHHHHHHHHHHHHhcCCceEEEECchhhCCCCCCceeEEEEcChH
Confidence            3468999999999987 555555554  9999999999999999875421             14557899999999999


Q ss_pred             cCC--CCHHHHHHHHHHcccCCcEEEEEEeccCCCCCc--hHHHHHHHHHhhh-hcCccCCCCHHHHHHHHHhCCCcEEE
Q 019861          242 HCW--SSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNL--IPFSRLLRQNMMQ-ISGSYTFLSEREIEDLCRACGLVDFK  316 (334)
Q Consensus       242 ~h~--~d~~~~L~~i~r~LkpgG~lii~~~~~~~~~~~--~~~~~~~~~~~~~-~~~~~~~~t~~~l~~ll~~~Gf~~v~  316 (334)
                      +|+  .++..+++++.++|+|||++++.+++.......  .++.......... .....++++.+++.+++++.||...+
T Consensus       100 ~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~g~~~~~  179 (209)
T 2p8j_A          100 FHMRKNDVKEAIDEIKRVLKPGGLACINFLTTKDERYNKGEKIGEGEFLQLERGEKVIHSYVSLEEADKYFKDMKVLFKE  179 (209)
T ss_dssp             GGSCHHHHHHHHHHHHHHEEEEEEEEEEEEETTSTTTTCSEEEETTEEEECC-CCCEEEEEECHHHHHHTTTTSEEEEEE
T ss_pred             HhCCHHHHHHHHHHHHHHcCCCcEEEEEEecccchhccchhhhccccceeccCCCceeEEecCHHHHHHHHhhcCceeee
Confidence            999  577899999999999999999999876432110  0000000000000 01123688999999999999997655

>2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens}

Probab=99.65  E-value=4.1e-16  Score=134.29  Aligned_cols=126  Identities=17%  Similarity=0.179  Sum_probs=97.3

Q ss_pred             CCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCCCCCCCCceEEEeCccccCCCCHHHHHHHHH
Q 019861          176 VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKDSIDAVHAGAAIHCWSSPSTGVAEIS  255 (334)
Q Consensus       176 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~fD~V~~~~vl~h~~d~~~~L~~i~  255 (334)
                      .++.+|||||||+|.++..+.     .+++|+|+++..+......+ ...++++++||+|++..++|| .++..+|+++.
T Consensus        66 ~~~~~vLDiG~G~G~~~~~l~-----~~v~~~D~s~~~~~~~~~d~-~~~~~~~~~fD~v~~~~~l~~-~~~~~~l~~~~  138 (215)
T 2zfu_A           66 PASLVVADFGCGDCRLASSIR-----NPVHCFDLASLDPRVTVCDM-AQVPLEDESVDVAVFCLSLMG-TNIRDFLEEAN  138 (215)
T ss_dssp             CTTSCEEEETCTTCHHHHHCC-----SCEEEEESSCSSTTEEESCT-TSCSCCTTCEEEEEEESCCCS-SCHHHHHHHHH
T ss_pred             CCCCeEEEECCcCCHHHHHhh-----ccEEEEeCCCCCceEEEecc-ccCCCCCCCEeEEEEehhccc-cCHHHHHHHHH
Confidence            456899999999999988773     38999999987111000000 112466789999999999964 89999999999


Q ss_pred             HcccCCcEEEEEEeccCCCCCchHHHHHHHHHhhhhcCccCCCCHHHHHHHHHhCCCcEEEEe-ecCcEEEEEEEcCC
Q 019861          256 RVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLCRACGLVDFKCT-RNRGFVMFTATKPS  332 (334)
Q Consensus       256 r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~l~~ll~~~Gf~~v~~~-~~g~~~~~~a~K~~  332 (334)
                      ++|+|||++++.++..                        .+.+.+++.++++++||++++.. ..+.+.+++++|..
T Consensus       139 ~~L~~gG~l~i~~~~~------------------------~~~~~~~~~~~l~~~Gf~~~~~~~~~~~~~~~~~~k~~  192 (215)
T 2zfu_A          139 RVLKPGGLLKVAEVSS------------------------RFEDVRTFLRAVTKLGFKIVSKDLTNSHFFLFDFQKTG  192 (215)
T ss_dssp             HHEEEEEEEEEEECGG------------------------GCSCHHHHHHHHHHTTEEEEEEECCSTTCEEEEEEECS
T ss_pred             HhCCCCeEEEEEEcCC------------------------CCCCHHHHHHHHHHCCCEEEEEecCCCeEEEEEEEecC
Confidence            9999999999987653                        12388999999999999998855 44567788888763

>3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A*

Probab=99.64  E-value=7.9e-16  Score=132.53  Aligned_cols=103  Identities=16%  Similarity=0.208  Sum_probs=87.5

Q ss_pred             HHHHcccCCCCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCC-----------CCCCCCceEE
Q 019861          167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES-----------NFPKDSIDAV  235 (334)
Q Consensus       167 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~-----------~~~~~~fD~V  235 (334)
                      ..+...+...++.+|||||||+|.++..+++.+.  +++|+|+++.+++.++++.....           ..++++||+|
T Consensus        41 ~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~fD~v  118 (216)
T 3ofk_A           41 QLLRLSLSSGAVSNGLEIGCAAGAFTEKLAPHCK--RLTVIDVMPRAIGRACQRTKRWSHISWAATDILQFSTAELFDLI  118 (216)
T ss_dssp             HHHHHHTTTSSEEEEEEECCTTSHHHHHHGGGEE--EEEEEESCHHHHHHHHHHTTTCSSEEEEECCTTTCCCSCCEEEE
T ss_pred             HHHHHHcccCCCCcEEEEcCCCCHHHHHHHHcCC--EEEEEECCHHHHHHHHHhcccCCCeEEEEcchhhCCCCCCccEE
Confidence            3455556666778999999999999999999875  99999999999999999865421           1246899999


Q ss_pred             EeCccccCCCCH---HHHHHHHHHcccCCcEEEEEEecc
Q 019861          236 HAGAAIHCWSSP---STGVAEISRVLRPGGVFVGTTYIV  271 (334)
Q Consensus       236 ~~~~vl~h~~d~---~~~L~~i~r~LkpgG~lii~~~~~  271 (334)
                      ++..+++|++++   ..+|+++.++|+|||++++.++..
T Consensus       119 ~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~  157 (216)
T 3ofk_A          119 VVAEVLYYLEDMTQMRTAIDNMVKMLAPGGHLVFGSARD  157 (216)
T ss_dssp             EEESCGGGSSSHHHHHHHHHHHHHTEEEEEEEEEEEECH
T ss_pred             EEccHHHhCCCHHHHHHHHHHHHHHcCCCCEEEEEecCC
Confidence            999999999998   467999999999999999988763

>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0

Probab=99.64  E-value=1.5e-14  Score=123.58  Aligned_cols=120  Identities=15%  Similarity=0.073  Sum_probs=97.8

Q ss_pred             HHHHHHHcccCCCCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCC-------------CC-CC
Q 019861          164 KEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES-------------NF-PK  229 (334)
Q Consensus       164 ~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~-------------~~-~~  229 (334)
                      .....+...+...++.+|||+|||+|.++..+++.++..+++|+|+++.+++.++++.....             .+ ..
T Consensus        27 ~i~~~~l~~l~~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~  106 (204)
T 3e05_A           27 EVRAVTLSKLRLQDDLVMWDIGAGSASVSIEASNLMPNGRIFALERNPQYLGFIRDNLKKFVARNVTLVEAFAPEGLDDL  106 (204)
T ss_dssp             HHHHHHHHHTTCCTTCEEEEETCTTCHHHHHHHHHCTTSEEEEEECCHHHHHHHHHHHHHHTCTTEEEEECCTTTTCTTS
T ss_pred             HHHHHHHHHcCCCCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeCChhhhhhcC
Confidence            33345666667777899999999999999999999877799999999999999998764211             11 23


Q ss_pred             CCceEEEeCccccCCCCHHHHHHHHHHcccCCcEEEEEEeccCCCCCchHHHHHHHHHhhhhcCccCCCCHHHHHHHHHh
Q 019861          230 DSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLCRA  309 (334)
Q Consensus       230 ~~fD~V~~~~vl~h~~d~~~~L~~i~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~l~~ll~~  309 (334)
                      ++||+|++..+++   ++..+++++.++|+|||++++.....+                          +.+++.+++++
T Consensus       107 ~~~D~i~~~~~~~---~~~~~l~~~~~~LkpgG~l~~~~~~~~--------------------------~~~~~~~~l~~  157 (204)
T 3e05_A          107 PDPDRVFIGGSGG---MLEEIIDAVDRRLKSEGVIVLNAVTLD--------------------------TLTKAVEFLED  157 (204)
T ss_dssp             CCCSEEEESCCTT---CHHHHHHHHHHHCCTTCEEEEEECBHH--------------------------HHHHHHHHHHH
T ss_pred             CCCCEEEECCCCc---CHHHHHHHHHHhcCCCeEEEEEecccc--------------------------cHHHHHHHHHH
Confidence            6799999998776   788999999999999999999776521                          35678899999


Q ss_pred             CCC
Q 019861          310 CGL  312 (334)
Q Consensus       310 ~Gf  312 (334)
                      +||
T Consensus       158 ~g~  160 (204)
T 3e05_A          158 HGY  160 (204)
T ss_dssp             TTC
T ss_pred             CCC
Confidence            998

>1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A*

Probab=99.64  E-value=2.2e-15  Score=139.86  Aligned_cols=149  Identities=15%  Similarity=0.166  Sum_probs=109.9

Q ss_pred             CCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHh-----cC--CCCCCCCceEEEeCccccCCCCHH-
Q 019861          177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQ-----QE--SNFPKDSIDAVHAGAAIHCWSSPS-  248 (334)
Q Consensus       177 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~-----~~--~~~~~~~fD~V~~~~vl~h~~d~~-  248 (334)
                      ++.+|||||||+|.++..+++..+..+++++|+ +.+++.+++.-.     .+  .+++  .||+|++.++|||++++. 
T Consensus       188 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~d~~~~~p--~~D~v~~~~~lh~~~d~~~  264 (352)
T 1fp2_A          188 GLESIVDVGGGTGTTAKIICETFPKLKCIVFDR-PQVVENLSGSNNLTYVGGDMFTSIP--NADAVLLKYILHNWTDKDC  264 (352)
T ss_dssp             TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCCBTTEEEEECCTTTCCC--CCSEEEEESCGGGSCHHHH
T ss_pred             cCceEEEeCCCccHHHHHHHHHCCCCeEEEeeC-HHHHhhcccCCCcEEEeccccCCCC--CccEEEeehhhccCCHHHH
Confidence            467999999999999999999987789999999 999887764210     00  1233  399999999999999887 


Q ss_pred             -HHHHHHHHcccC---CcEEEEEEeccCCCCCch--HHHHHHHH-HhhhhcCccCCCCHHHHHHHHHhCCCcEEEEee-c
Q 019861          249 -TGVAEISRVLRP---GGVFVGTTYIVDGPFNLI--PFSRLLRQ-NMMQISGSYTFLSEREIEDLCRACGLVDFKCTR-N  320 (334)
Q Consensus       249 -~~L~~i~r~Lkp---gG~lii~~~~~~~~~~~~--~~~~~~~~-~~~~~~~~~~~~t~~~l~~ll~~~Gf~~v~~~~-~  320 (334)
                       .+|++++++|+|   ||++++.++.........  ........ .... . ....++.++|.++++++||++++... .
T Consensus       265 ~~~l~~~~~~L~p~~~gG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~-~-~g~~~t~~e~~~ll~~aGf~~~~~~~~~  342 (352)
T 1fp2_A          265 LRILKKCKEAVTNDGKRGKVTIIDMVIDKKKDENQVTQIKLLMDVNMAC-L-NGKERNEEEWKKLFIEAGFQHYKISPLT  342 (352)
T ss_dssp             HHHHHHHHHHHSGGGCCCEEEEEECEECTTTSCHHHHHHHHHHHHHGGG-G-TCCCEEHHHHHHHHHHTTCCEEEEEEEE
T ss_pred             HHHHHHHHHhCCCCCCCcEEEEEEeecCCCCCccchhhhHhhccHHHHh-c-cCCCCCHHHHHHHHHHCCCCeeEEEecC
Confidence             999999999999   999999988765432210  11111111 1111 1 14557999999999999999988654 4


Q ss_pred             CcEEEEEEEc
Q 019861          321 RGFVMFTATK  330 (334)
Q Consensus       321 g~~~~~~a~K  330 (334)
                      +...++.+++
T Consensus       343 ~~~~vie~~~  352 (352)
T 1fp2_A          343 GFLSLIEIYP  352 (352)
T ss_dssp             TTEEEEEEEC
T ss_pred             CCcEEEEEeC
Confidence            5556666653

>4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix}

Probab=99.63  E-value=5.2e-15  Score=128.59  Aligned_cols=139  Identities=13%  Similarity=0.093  Sum_probs=102.8

Q ss_pred             ccCCCCCCcEEEECCCcCHHHHHHHHc-CCCCeEEEEeCCHHHHHHHHHHHhcCC---------------CCCCCCceEE
Q 019861          172 YLKPVLGGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQQES---------------NFPKDSIDAV  235 (334)
Q Consensus       172 ~l~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~~v~giD~s~~~~~~a~~~~~~~~---------------~~~~~~fD~V  235 (334)
                      .+...+|.+|||+|||+|.++..+++. |+.++|+|+|+++.|++.++++.....               ++..+++|+|
T Consensus        72 ~l~ikpG~~VldlG~G~G~~~~~la~~VG~~G~V~avD~s~~~~~~l~~~a~~~~ni~~V~~d~~~p~~~~~~~~~vDvV  151 (233)
T 4df3_A           72 ELPVKEGDRILYLGIASGTTASHMSDIIGPRGRIYGVEFAPRVMRDLLTVVRDRRNIFPILGDARFPEKYRHLVEGVDGL  151 (233)
T ss_dssp             CCCCCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEECCHHHHHHHHHHSTTCTTEEEEESCTTCGGGGTTTCCCEEEE
T ss_pred             hcCCCCCCEEEEecCcCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhHhhcCeeEEEEeccCccccccccceEEEE
Confidence            456788999999999999999999987 788899999999999999988765432               3456789999


Q ss_pred             EeCccccCCCCHHHHHHHHHHcccCCcEEEEEEeccCCCCCchHHHHHHHHHhhhhcCccCCCCHHHHHHHHHhCCCcEE
Q 019861          236 HAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLCRACGLVDF  315 (334)
Q Consensus       236 ~~~~vl~h~~d~~~~L~~i~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~l~~ll~~~Gf~~v  315 (334)
                      ++.  +.|..++..++.++++.|||||++++.......     ..        .. + ...  ..++..+.|+++||+.+
T Consensus       152 f~d--~~~~~~~~~~l~~~~r~LKpGG~lvI~ik~r~~-----d~--------~~-p-~~~--~~~~ev~~L~~~GF~l~  212 (233)
T 4df3_A          152 YAD--VAQPEQAAIVVRNARFFLRDGGYMLMAIKARSI-----DV--------TT-E-PSE--VYKREIKTLMDGGLEIK  212 (233)
T ss_dssp             EEC--CCCTTHHHHHHHHHHHHEEEEEEEEEEEECCHH-----HH--------HT-C-CCH--HHHHHHHHHHHTTCCEE
T ss_pred             EEe--ccCChhHHHHHHHHHHhccCCCEEEEEEecccC-----CC--------CC-C-hHH--HHHHHHHHHHHCCCEEE
Confidence            864  455567889999999999999999987643310     00        00 0 000  11334567889999999


Q ss_pred             EEeecC----cEEEEEEE
Q 019861          316 KCTRNR----GFVMFTAT  329 (334)
Q Consensus       316 ~~~~~g----~~~~~~a~  329 (334)
                      +.....    .+.+++++
T Consensus       213 e~i~L~pf~~~H~lv~~~  230 (233)
T 4df3_A          213 DVVHLDPFDRDHAMIYAV  230 (233)
T ss_dssp             EEEECTTTSTTEEEEEEC
T ss_pred             EEEccCCCCCceEEEEEE
Confidence            876553    36777665

>3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=99.63  E-value=1.4e-16  Score=139.78  Aligned_cols=91  Identities=12%  Similarity=0.268  Sum_probs=78.3

Q ss_pred             CCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCC---------------CCCCCCceEEEe---
Q 019861          176 VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES---------------NFPKDSIDAVHA---  237 (334)
Q Consensus       176 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~---------------~~~~~~fD~V~~---  237 (334)
                      .+|++|||||||+|..+..+++..+ .+++|+|+++.+++.|+++.....               .+++++||.|+.   
T Consensus        59 ~~G~rVLdiG~G~G~~~~~~~~~~~-~~v~~id~~~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~FD~i~~D~~  137 (236)
T 3orh_A           59 SKGGRVLEVGFGMAIAASKVQEAPI-DEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTLPDGHFDGILYDTY  137 (236)
T ss_dssp             TTCEEEEEECCTTSHHHHHHTTSCE-EEEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGGSCTTCEEEEEECCC
T ss_pred             cCCCeEEEECCCccHHHHHHHHhCC-cEEEEEeCCHHHHHHHHHHHhhCCCceEEEeehHHhhcccccccCCceEEEeee
Confidence            3588999999999999999988764 589999999999999998865432               467889999975   


Q ss_pred             --CccccCCCCHHHHHHHHHHcccCCcEEEEE
Q 019861          238 --GAAIHCWSSPSTGVAEISRVLRPGGVFVGT  267 (334)
Q Consensus       238 --~~vl~h~~d~~~~L~~i~r~LkpgG~lii~  267 (334)
                        ..+++|+.++..++++++|+|||||++++.
T Consensus       138 ~~~~~~~~~~~~~~~~~e~~rvLkPGG~l~f~  169 (236)
T 3orh_A          138 PLSEETWHTHQFNFIKNHAFRLLKPGGVLTYC  169 (236)
T ss_dssp             CCBGGGTTTHHHHHHHHTHHHHEEEEEEEEEC
T ss_pred             ecccchhhhcchhhhhhhhhheeCCCCEEEEE
Confidence              566788889999999999999999999874

>1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A

Probab=99.62  E-value=1.4e-14  Score=126.23  Aligned_cols=140  Identities=13%  Similarity=0.101  Sum_probs=101.4

Q ss_pred             HcccCCCCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCC----------------CCCCCCce
Q 019861          170 KGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES----------------NFPKDSID  233 (334)
Q Consensus       170 ~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~----------------~~~~~~fD  233 (334)
                      .+.+...++.+|||+|||+|.++..+++..+..+|+|+|+++.+++.++++.....                ++. ++||
T Consensus        67 l~~~~~~~~~~VLDlGcG~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~-~~~D  145 (230)
T 1fbn_A           67 LKVMPIKRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAERENIIPILGDANKPQEYANIV-EKVD  145 (230)
T ss_dssp             CCCCCCCTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTCTTEEEEECCTTCGGGGTTTS-CCEE
T ss_pred             ccccCCCCCCEEEEEcccCCHHHHHHHHHcCCcEEEEEECCHHHHHHHHHHhhcCCCeEEEECCCCCcccccccC-ccEE
Confidence            44455556889999999999999999988535699999999999999988754321                122 6799


Q ss_pred             EEEeCccccCCCCH---HHHHHHHHHcccCCcEEEEEEeccCCCCCchHHHHHHHHHhhhhcCccCCCCHHHHHHHHHhC
Q 019861          234 AVHAGAAIHCWSSP---STGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLCRAC  310 (334)
Q Consensus       234 ~V~~~~vl~h~~d~---~~~L~~i~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~l~~ll~~~  310 (334)
                      +|+     ++++++   ..+++++.++|+|||++++........ ...+..               .+..+++. +|+++
T Consensus       146 ~v~-----~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~-~~~~~~---------------~~~~~~l~-~l~~~  203 (230)
T 1fbn_A          146 VIY-----EDVAQPNQAEILIKNAKWFLKKGGYGMIAIKARSID-VTKDPK---------------EIFKEQKE-ILEAG  203 (230)
T ss_dssp             EEE-----ECCCSTTHHHHHHHHHHHHEEEEEEEEEEEEGGGTC-SSSCHH---------------HHHHHHHH-HHHHH
T ss_pred             EEE-----EecCChhHHHHHHHHHHHhCCCCcEEEEEEecCCCC-CCCCHH---------------HhhHHHHH-HHHHC
Confidence            998     556777   788999999999999999973221111 111110               11236787 89999


Q ss_pred             CCcEEEEeecCc----EEEEEEEcCC
Q 019861          311 GLVDFKCTRNRG----FVMFTATKPS  332 (334)
Q Consensus       311 Gf~~v~~~~~g~----~~~~~a~K~~  332 (334)
                      ||++++......    +.+++++|++
T Consensus       204 Gf~~~~~~~~~~~~~~~~~v~~~k~~  229 (230)
T 1fbn_A          204 GFKIVDEVDIEPFEKDHVMFVGIWEG  229 (230)
T ss_dssp             TEEEEEEEECTTTSTTEEEEEEEECC
T ss_pred             CCEEEEEEccCCCccceEEEEEEeCC
Confidence            999988765433    6788888765

>2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A*

Probab=99.61  E-value=1.2e-14  Score=128.67  Aligned_cols=124  Identities=17%  Similarity=0.233  Sum_probs=104.0

Q ss_pred             CCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCC------------CCCCCCceEEEeCccccC
Q 019861          176 VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES------------NFPKDSIDAVHAGAAIHC  243 (334)
Q Consensus       176 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~------------~~~~~~fD~V~~~~vl~h  243 (334)
                      .++.+|||+|||+|.++..+++.+.  +++|+|+++.+++.++++.....            .+++++||+|+++...++
T Consensus       119 ~~~~~VLDiGcG~G~l~~~la~~g~--~v~gvDi~~~~v~~a~~n~~~~~~~v~~~~~d~~~~~~~~~fD~Vv~n~~~~~  196 (254)
T 2nxc_A          119 RPGDKVLDLGTGSGVLAIAAEKLGG--KALGVDIDPMVLPQAEANAKRNGVRPRFLEGSLEAALPFGPFDLLVANLYAEL  196 (254)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHTTC--EEEEEESCGGGHHHHHHHHHHTTCCCEEEESCHHHHGGGCCEEEEEEECCHHH
T ss_pred             CCCCEEEEecCCCcHHHHHHHHhCC--eEEEEECCHHHHHHHHHHHHHcCCcEEEEECChhhcCcCCCCCEEEECCcHHH
Confidence            3478999999999999999999886  99999999999999998765332            144678999999766554


Q ss_pred             CCCHHHHHHHHHHcccCCcEEEEEEeccCCCCCchHHHHHHHHHhhhhcCccCCCCHHHHHHHHHhCCCcEEEEeecCcE
Q 019861          244 WSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLCRACGLVDFKCTRNRGF  323 (334)
Q Consensus       244 ~~d~~~~L~~i~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~l~~ll~~~Gf~~v~~~~~g~~  323 (334)
                         ...++.++.++|+|||+++++.....                          +.+++.++++++||++++....+.|
T Consensus       197 ---~~~~l~~~~~~LkpgG~lils~~~~~--------------------------~~~~v~~~l~~~Gf~~~~~~~~~~W  247 (254)
T 2nxc_A          197 ---HAALAPRYREALVPGGRALLTGILKD--------------------------RAPLVREAMAGAGFRPLEEAAEGEW  247 (254)
T ss_dssp             ---HHHHHHHHHHHEEEEEEEEEEEEEGG--------------------------GHHHHHHHHHHTTCEEEEEEEETTE
T ss_pred             ---HHHHHHHHHHHcCCCCEEEEEeeccC--------------------------CHHHHHHHHHHCCCEEEEEeccCCe
Confidence               46789999999999999999766431                          3678999999999999998888889


Q ss_pred             EEEEEEc
Q 019861          324 VMFTATK  330 (334)
Q Consensus       324 ~~~~a~K  330 (334)
                      ..++++|
T Consensus       248 ~~l~~~k  254 (254)
T 2nxc_A          248 VLLAYGR  254 (254)
T ss_dssp             EEEEEEC
T ss_pred             EEEEEEC
Confidence            8888876

>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana}

Probab=99.61  E-value=7e-15  Score=146.16  Aligned_cols=146  Identities=10%  Similarity=0.075  Sum_probs=109.0

Q ss_pred             HHHHHcccCCCCCCcEEEECCCcCHHHHHHHHcC-CCCeEEEEeCCHHHHHHHHHHHhc--------------------C
Q 019861          166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSG-LFSLVVALDYSENMLKQCYEFVQQ--------------------E  224 (334)
Q Consensus       166 ~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~~v~giD~s~~~~~~a~~~~~~--------------------~  224 (334)
                      .+.+.+.+...++.+|||||||+|.++..+++.+ +..+|+|+|+++.+++.|++++..                    .
T Consensus       710 le~LLelL~~~~g~rVLDVGCGTG~lai~LAr~g~p~a~VtGVDIS~emLe~AReRLa~~lnAkr~gl~nVefiqGDa~d  789 (950)
T 3htx_A          710 VEYALKHIRESSASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVKLNKEACNVKSATLYDGSILE  789 (950)
T ss_dssp             HHHHHHHHHHSCCSEEEEETCSSSHHHHHHTSSCCCCCEEEEEESCHHHHHHHHHHHHHHTTTTCSSCSEEEEEESCTTS
T ss_pred             HHHHHHHhcccCCCEEEEECCCCCHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhccchhhcCCCceEEEECchHh
Confidence            4445555554568899999999999999999987 446999999999999999885431                    1


Q ss_pred             CCCCCCCceEEEeCccccCCCCHH--HHHHHHHHcccCCcEEEEEEeccCCCCCchHHHHHH-------H-----HHhhh
Q 019861          225 SNFPKDSIDAVHAGAAIHCWSSPS--TGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLL-------R-----QNMMQ  290 (334)
Q Consensus       225 ~~~~~~~fD~V~~~~vl~h~~d~~--~~L~~i~r~LkpgG~lii~~~~~~~~~~~~~~~~~~-------~-----~~~~~  290 (334)
                      .++++++||+|++..+++|++++.  .+++++.++|+|| .+++.+++.+..    ..+..+       .     .....
T Consensus       790 Lp~~d~sFDlVV~~eVLeHL~dp~l~~~L~eI~RvLKPG-~LIISTPN~eyN----~lF~~Lnp~tr~~dPd~~~~~~fR  864 (950)
T 3htx_A          790 FDSRLHDVDIGTCLEVIEHMEEDQACEFGEKVLSLFHPK-LLIVSTPNYEFN----TILQRSTPETQEENNSEPQLPKFR  864 (950)
T ss_dssp             CCTTSCSCCEEEEESCGGGSCHHHHHHHHHHHHHTTCCS-EEEEEECBGGGH----HHHTCC------------CCSSCS
T ss_pred             CCcccCCeeEEEEeCchhhCChHHHHHHHHHHHHHcCCC-EEEEEecCchhh----hhhhhccccccccccccccccccc
Confidence            145568999999999999999876  5899999999999 999999886421    111100       0     01112


Q ss_pred             hcCccCCCCHHHHHH----HHHhCCCcEEE
Q 019861          291 ISGSYTFLSEREIED----LCRACGLVDFK  316 (334)
Q Consensus       291 ~~~~~~~~t~~~l~~----ll~~~Gf~~v~  316 (334)
                      ...|...++.++++.    ++++.||.+.-
T Consensus       865 h~DHrFEWTReEFr~Wae~LAer~GYsVef  894 (950)
T 3htx_A          865 NHDHKFEWTREQFNQWASKLGKRHNYSVEF  894 (950)
T ss_dssp             CSSCSCCBCHHHHHHHHHHHHHHTTEEEEE
T ss_pred             ccCcceeecHHHHHHHHHHHHHhcCcEEEE
Confidence            234566788999888    77788997654

>2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens}

Probab=99.59  E-value=1.3e-14  Score=124.39  Aligned_cols=106  Identities=25%  Similarity=0.362  Sum_probs=86.8

Q ss_pred             HHHHHHHHcccCCCCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcC------------CCCCCC
Q 019861          163 EKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQE------------SNFPKD  230 (334)
Q Consensus       163 ~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~------------~~~~~~  230 (334)
                      ....+.+..++.  ++.+|||+|||+|.++..+++.++ .+++|+|+++.+++.++++....            .+++++
T Consensus        30 ~~~~~~l~~~~~--~~~~vLdiGcG~G~~~~~l~~~~~-~~v~~~D~s~~~~~~a~~~~~~~~~i~~~~~d~~~~~~~~~  106 (215)
T 2pxx_A           30 SSFRALLEPELR--PEDRILVLGCGNSALSYELFLGGF-PNVTSVDYSSVVVAAMQACYAHVPQLRWETMDVRKLDFPSA  106 (215)
T ss_dssp             HHHHHHHGGGCC--TTCCEEEETCTTCSHHHHHHHTTC-CCEEEEESCHHHHHHHHHHTTTCTTCEEEECCTTSCCSCSS
T ss_pred             HHHHHHHHHhcC--CCCeEEEECCCCcHHHHHHHHcCC-CcEEEEeCCHHHHHHHHHhcccCCCcEEEEcchhcCCCCCC
Confidence            344556666653  478999999999999999999875 38999999999999999876431            145678


Q ss_pred             CceEEEeCccccCCC---------------CHHHHHHHHHHcccCCcEEEEEEecc
Q 019861          231 SIDAVHAGAAIHCWS---------------SPSTGVAEISRVLRPGGVFVGTTYIV  271 (334)
Q Consensus       231 ~fD~V~~~~vl~h~~---------------d~~~~L~~i~r~LkpgG~lii~~~~~  271 (334)
                      +||+|++..+++|+.               ++..+|+++.++|+|||++++.+++.
T Consensus       107 ~fD~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~  162 (215)
T 2pxx_A          107 SFDVVLEKGTLDALLAGERDPWTVSSEGVHTVDQVLSEVSRVLVPGGRFISMTSAA  162 (215)
T ss_dssp             CEEEEEEESHHHHHTTTCSCTTSCCHHHHHHHHHHHHHHHHHEEEEEEEEEEESCC
T ss_pred             cccEEEECcchhhhccccccccccccchhHHHHHHHHHHHHhCcCCCEEEEEeCCC
Confidence            999999999887765               56789999999999999999988764

>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae}

Probab=99.59  E-value=1.1e-14  Score=121.18  Aligned_cols=120  Identities=21%  Similarity=0.210  Sum_probs=94.7

Q ss_pred             HHHHcccCCCCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCC-------------CCCC--CC
Q 019861          167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES-------------NFPK--DS  231 (334)
Q Consensus       167 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~-------------~~~~--~~  231 (334)
                      ..+...+...++.+|||+|||+|.++..++...+..+++|+|+++.+++.+++++....             .+++  ++
T Consensus        15 ~~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~~   94 (178)
T 3hm2_A           15 ALAISALAPKPHETLWDIGGGSGSIAIEWLRSTPQTTAVCFEISEERRERILSNAINLGVSDRIAVQQGAPRAFDDVPDN   94 (178)
T ss_dssp             HHHHHHHCCCTTEEEEEESTTTTHHHHHHHTTSSSEEEEEECSCHHHHHHHHHHHHTTTCTTSEEEECCTTGGGGGCCSC
T ss_pred             HHHHHHhcccCCCeEEEeCCCCCHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHHHHhCCCCCEEEecchHhhhhccCCC
Confidence            44555566667889999999999999999998666799999999999999998754321             2233  78


Q ss_pred             ceEEEeCccccCCCCHHHHHHHHHHcccCCcEEEEEEeccCCCCCchHHHHHHHHHhhhhcCccCCCCHHHHHHHHHhCC
Q 019861          232 IDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLCRACG  311 (334)
Q Consensus       232 fD~V~~~~vl~h~~d~~~~L~~i~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~l~~ll~~~G  311 (334)
                      ||+|++..+++|    ..+++++.++|+|||++++.+...+                          +...+.+++++.|
T Consensus        95 ~D~i~~~~~~~~----~~~l~~~~~~L~~gG~l~~~~~~~~--------------------------~~~~~~~~~~~~~  144 (178)
T 3hm2_A           95 PDVIFIGGGLTA----PGVFAAAWKRLPVGGRLVANAVTVE--------------------------SEQMLWALRKQFG  144 (178)
T ss_dssp             CSEEEECC-TTC----TTHHHHHHHTCCTTCEEEEEECSHH--------------------------HHHHHHHHHHHHC
T ss_pred             CCEEEECCcccH----HHHHHHHHHhcCCCCEEEEEeeccc--------------------------cHHHHHHHHHHcC
Confidence            999999999988    6689999999999999999776531                          2346677788888


Q ss_pred             CcEEE
Q 019861          312 LVDFK  316 (334)
Q Consensus       312 f~~v~  316 (334)
                      +++..
T Consensus       145 ~~~~~  149 (178)
T 3hm2_A          145 GTISS  149 (178)
T ss_dssp             CEEEE
T ss_pred             CeeEE
Confidence            86655

>1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A*

Probab=99.59  E-value=8.4e-15  Score=136.20  Aligned_cols=151  Identities=14%  Similarity=0.096  Sum_probs=108.9

Q ss_pred             CCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHh-----cC--CCCCCCCceEEEeCccccCCCCHH-
Q 019861          177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQ-----QE--SNFPKDSIDAVHAGAAIHCWSSPS-  248 (334)
Q Consensus       177 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~-----~~--~~~~~~~fD~V~~~~vl~h~~d~~-  248 (334)
                      +..+|||||||+|.++..+++.++..+++++|+ +.+++.+++.-.     .+  .+++  .||+|++.++|||++|+. 
T Consensus       193 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~v~~~~~d~~~~~~--~~D~v~~~~vlh~~~d~~~  269 (358)
T 1zg3_A          193 GLESLVDVGGGTGGVTKLIHEIFPHLKCTVFDQ-PQVVGNLTGNENLNFVGGDMFKSIP--SADAVLLKWVLHDWNDEQS  269 (358)
T ss_dssp             TCSEEEEETCTTSHHHHHHHHHCTTSEEEEEEC-HHHHSSCCCCSSEEEEECCTTTCCC--CCSEEEEESCGGGSCHHHH
T ss_pred             CCCEEEEECCCcCHHHHHHHHHCCCCeEEEecc-HHHHhhcccCCCcEEEeCccCCCCC--CceEEEEcccccCCCHHHH
Confidence            457999999999999999999988789999999 788877664100     00  1233  499999999999999987 


Q ss_pred             -HHHHHHHHcccC---CcEEEEEEeccCCCCCc--hHHHHHHHHHhhhhcCccCCCCHHHHHHHHHhCCCcEEEEee-cC
Q 019861          249 -TGVAEISRVLRP---GGVFVGTTYIVDGPFNL--IPFSRLLRQNMMQISGSYTFLSEREIEDLCRACGLVDFKCTR-NR  321 (334)
Q Consensus       249 -~~L~~i~r~Lkp---gG~lii~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~t~~~l~~ll~~~Gf~~v~~~~-~g  321 (334)
                       .+|++++++|+|   ||++++.++........  ................+...++.++|.++++++||++++... .+
T Consensus       270 ~~~l~~~~~~L~p~~~gG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~g~~~t~~e~~~ll~~aGf~~~~~~~~~~  349 (358)
T 1zg3_A          270 LKILKNSKEAISHKGKDGKVIIIDISIDETSDDRGLTELQLDYDLVMLTMFLGKERTKQEWEKLIYDAGFSSYKITPISG  349 (358)
T ss_dssp             HHHHHHHHHHTGGGGGGCEEEEEECEECTTCSCHHHHHHHHHHHHHHHHHHSCCCEEHHHHHHHHHHTTCCEEEEEEETT
T ss_pred             HHHHHHHHHhCCCCCCCcEEEEEEeccCCCCccchhhhHHHhhCHHHhccCCCCCCCHHHHHHHHHHcCCCeeEEEecCC
Confidence             999999999999   99999988876433221  011111111111111134567999999999999999988654 45


Q ss_pred             cEEEEEEEc
Q 019861          322 GFVMFTATK  330 (334)
Q Consensus       322 ~~~~~~a~K  330 (334)
                      ...++.+++
T Consensus       350 ~~~vie~~~  358 (358)
T 1zg3_A          350 FKSLIEVYP  358 (358)
T ss_dssp             TEEEEEEEC
T ss_pred             CcEEEEEeC
Confidence            556666553

>1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4

Probab=99.58  E-value=2.2e-14  Score=120.63  Aligned_cols=138  Identities=13%  Similarity=0.191  Sum_probs=104.3

Q ss_pred             HHHHHHHcccCCCCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcC---------------CCCC
Q 019861          164 KEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQE---------------SNFP  228 (334)
Q Consensus       164 ~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~---------------~~~~  228 (334)
                      ...+.+.+.+...++.+|||+|||+|.++..+++.+  .+++|+|+++.+++.++++....               ..++
T Consensus        39 ~~~~~l~~~~~~~~~~~vLdiG~G~G~~~~~~~~~~--~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~  116 (194)
T 1dus_A           39 KGTKILVENVVVDKDDDILDLGCGYGVIGIALADEV--KSTTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYENVK  116 (194)
T ss_dssp             HHHHHHHHHCCCCTTCEEEEETCTTSHHHHHHGGGS--SEEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTTTCT
T ss_pred             hHHHHHHHHcccCCCCeEEEeCCCCCHHHHHHHHcC--CeEEEEECCHHHHHHHHHHHHHcCCCccceEEEECchhcccc
Confidence            344566666666678899999999999999999884  49999999999999999876421               1234


Q ss_pred             CCCceEEEeCccccC-CCCHHHHHHHHHHcccCCcEEEEEEeccCCCCCchHHHHHHHHHhhhhcCccCCCCHHHHHHHH
Q 019861          229 KDSIDAVHAGAAIHC-WSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLC  307 (334)
Q Consensus       229 ~~~fD~V~~~~vl~h-~~d~~~~L~~i~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~l~~ll  307 (334)
                      +++||+|++...++| ..+...+++++.++|+|||.+++.++...                          ..+++.+.+
T Consensus       117 ~~~~D~v~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~--------------------------~~~~~~~~l  170 (194)
T 1dus_A          117 DRKYNKIITNPPIRAGKEVLHRIIEEGKELLKDNGEIWVVIQTKQ--------------------------GAKSLAKYM  170 (194)
T ss_dssp             TSCEEEEEECCCSTTCHHHHHHHHHHHHHHEEEEEEEEEEEESTH--------------------------HHHHHHHHH
T ss_pred             cCCceEEEECCCcccchhHHHHHHHHHHHHcCCCCEEEEEECCCC--------------------------ChHHHHHHH
Confidence            678999999988887 34567899999999999999999988642                          123466666


Q ss_pred             HhCCCcEEE-EeecCcEEEEEEEc
Q 019861          308 RACGLVDFK-CTRNRGFVMFTATK  330 (334)
Q Consensus       308 ~~~Gf~~v~-~~~~g~~~~~~a~K  330 (334)
                      ++. |..++ ......+.++.++|
T Consensus       171 ~~~-~~~~~~~~~~~~~~~~~~~k  193 (194)
T 1dus_A          171 KDV-FGNVETVTIKGGYRVLKSKK  193 (194)
T ss_dssp             HHH-HSCCEEEEEETTEEEEEEEC
T ss_pred             HHH-hcceEEEecCCcEEEEEEee
Confidence            666 44444 33445677777776

>1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A*

Probab=99.58  E-value=2e-14  Score=120.69  Aligned_cols=121  Identities=20%  Similarity=0.203  Sum_probs=96.3

Q ss_pred             HHHHHHHHcccCCCCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCC--------------CCC
Q 019861          163 EKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES--------------NFP  228 (334)
Q Consensus       163 ~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~--------------~~~  228 (334)
                      ......+...+...++.+|||+|||+|.++..++..+  .+++|+|+++.+++.+++++....              .++
T Consensus        19 ~~~~~~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~~--~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~   96 (192)
T 1l3i_A           19 MEVRCLIMCLAEPGKNDVAVDVGCGTGGVTLELAGRV--RRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPEALC   96 (192)
T ss_dssp             HHHHHHHHHHHCCCTTCEEEEESCTTSHHHHHHHTTS--SEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHHHHT
T ss_pred             HHHHHHHHHhcCCCCCCEEEEECCCCCHHHHHHHHhc--CEEEEEECCHHHHHHHHHHHHHcCCCcceEEEecCHHHhcc
Confidence            4444556666666778899999999999999999887  499999999999999998764321              123


Q ss_pred             C-CCceEEEeCccccCCCCHHHHHHHHHHcccCCcEEEEEEeccCCCCCchHHHHHHHHHhhhhcCccCCCCHHHHHHHH
Q 019861          229 K-DSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLC  307 (334)
Q Consensus       229 ~-~~fD~V~~~~vl~h~~d~~~~L~~i~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~l~~ll  307 (334)
                      + +.||+|++..+++|   ...+++++.++|+|||.+++..+...                          +..++.+++
T Consensus        97 ~~~~~D~v~~~~~~~~---~~~~l~~~~~~l~~gG~l~~~~~~~~--------------------------~~~~~~~~l  147 (192)
T 1l3i_A           97 KIPDIDIAVVGGSGGE---LQEILRIIKDKLKPGGRIIVTAILLE--------------------------TKFEAMECL  147 (192)
T ss_dssp             TSCCEEEEEESCCTTC---HHHHHHHHHHTEEEEEEEEEEECBHH--------------------------HHHHHHHHH
T ss_pred             cCCCCCEEEECCchHH---HHHHHHHHHHhcCCCcEEEEEecCcc--------------------------hHHHHHHHH
Confidence            3 68999999988764   58899999999999999999876521                          245788899


Q ss_pred             HhCCCcE
Q 019861          308 RACGLVD  314 (334)
Q Consensus       308 ~~~Gf~~  314 (334)
                      ++.||.+
T Consensus       148 ~~~g~~~  154 (192)
T 1l3i_A          148 RDLGFDV  154 (192)
T ss_dssp             HHTTCCC
T ss_pred             HHCCCce
Confidence            9999943

>2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41

Probab=99.58  E-value=7.2e-15  Score=130.42  Aligned_cols=145  Identities=21%  Similarity=0.295  Sum_probs=104.0

Q ss_pred             HHHHcccCCCCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhc--------CCCCCCCCceEEEeC
Q 019861          167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQ--------ESNFPKDSIDAVHAG  238 (334)
Q Consensus       167 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~--------~~~~~~~~fD~V~~~  238 (334)
                      +.+..++.  ++.+|||||||+|.++..+++.+.  +++|+|+|+.+++.++++...        ..++++++||+|++.
T Consensus        46 ~~l~~~~~--~~~~vLDiGcG~G~~~~~l~~~~~--~v~gvD~s~~~l~~a~~~~~~~~~~~d~~~~~~~~~~fD~v~~~  121 (260)
T 2avn_A           46 SFLEEYLK--NPCRVLDLGGGTGKWSLFLQERGF--EVVLVDPSKEMLEVAREKGVKNVVEAKAEDLPFPSGAFEAVLAL  121 (260)
T ss_dssp             HHHHHHCC--SCCEEEEETCTTCHHHHHHHTTTC--EEEEEESCHHHHHHHHHHTCSCEEECCTTSCCSCTTCEEEEEEC
T ss_pred             HHHHHhcC--CCCeEEEeCCCcCHHHHHHHHcCC--eEEEEeCCHHHHHHHHhhcCCCEEECcHHHCCCCCCCEEEEEEc
Confidence            34444544  578999999999999999998865  999999999999999987541        124667899999999


Q ss_pred             ccccCC-CCHHHHHHHHHHcccCCcEEEEEEeccCCCCCc---hHHHHHHHHHhhhh--c--C-----ccCCCCHHHHHH
Q 019861          239 AAIHCW-SSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNL---IPFSRLLRQNMMQI--S--G-----SYTFLSEREIED  305 (334)
Q Consensus       239 ~vl~h~-~d~~~~L~~i~r~LkpgG~lii~~~~~~~~~~~---~~~~~~~~~~~~~~--~--~-----~~~~~t~~~l~~  305 (334)
                      .+++|+ +++..+|+++.++|+|||++++.+++.......   ..............  .  .     ...+++.+++.+
T Consensus       122 ~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  201 (260)
T 2avn_A          122 GDVLSYVENKDKAFSEIRRVLVPDGLLIATVDNFYTFLQQMIEKDAWDQITRFLKTQTTSVGTTLFSFNSYAFKPEDLDS  201 (260)
T ss_dssp             SSHHHHCSCHHHHHHHHHHHEEEEEEEEEEEEBHHHHHHHHHHTTCHHHHHHHHHHCEEEEECSSEEEEEECBCGGGGSS
T ss_pred             chhhhccccHHHHHHHHHHHcCCCeEEEEEeCChHHHHHHhhcchhHHHHHHHHhccccccCCCceeEEEeccCHHHHHH
Confidence            887776 789999999999999999999999875310000   00000000001000  0  0     113789999988


Q ss_pred             HHHhCCCcEEEEe
Q 019861          306 LCRACGLVDFKCT  318 (334)
Q Consensus       306 ll~~~Gf~~v~~~  318 (334)
                      +   +||++++..
T Consensus       202 l---aGf~~~~~~  211 (260)
T 2avn_A          202 L---EGFETVDIR  211 (260)
T ss_dssp             C---TTEEEEEEE
T ss_pred             h---cCceEEEEE
Confidence            8   999988754

>3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli}

Probab=99.57  E-value=5.9e-15  Score=123.02  Aligned_cols=153  Identities=8%  Similarity=0.021  Sum_probs=111.7

Q ss_pred             CCcHHHHHHHHcccCCCCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCC------------CC
Q 019861          160 PGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES------------NF  227 (334)
Q Consensus       160 ~~~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~------------~~  227 (334)
                      +..+.....+..++..  +.+|||+|||+|.++..++...|..+|+++|+|+.|++.+++++...+            ..
T Consensus        34 p~ld~fY~~~~~~l~~--~~~VLDlGCG~GplAl~l~~~~p~a~~~A~Di~~~~leiar~~~~~~g~~~~v~~~d~~~~~  111 (200)
T 3fzg_A           34 ATLNDFYTYVFGNIKH--VSSILDFGCGFNPLALYQWNENEKIIYHAYDIDRAEIAFLSSIIGKLKTTIKYRFLNKESDV  111 (200)
T ss_dssp             GGHHHHHHHHHHHSCC--CSEEEEETCTTHHHHHHHHCSSCCCEEEEECSCHHHHHHHHHHHHHSCCSSEEEEECCHHHH
T ss_pred             HhHHHHHHHHHhhcCC--CCeEEEecCCCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCccEEEecccccC
Confidence            3445556667777754  789999999999999999998888899999999999999999876533            13


Q ss_pred             CCCCceEEEeCccccCCCCHHHHHHHHHHcccCCcEEEEEEeccCCCCCchHHHHHHHHHhhhhcCccCCCCHHHHHHHH
Q 019861          228 PKDSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLC  307 (334)
Q Consensus       228 ~~~~fD~V~~~~vl~h~~d~~~~L~~i~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~l~~ll  307 (334)
                      +.++||+|++..+|||+.+....+.++.+.|+|||+++-- |... .....+              ...-.-.+.|++.+
T Consensus       112 ~~~~~DvVLa~k~LHlL~~~~~al~~v~~~L~pggvfISf-ptks-l~Gr~~--------------gm~~~Y~~~~~~~~  175 (200)
T 3fzg_A          112 YKGTYDVVFLLKMLPVLKQQDVNILDFLQLFHTQNFVISF-PIKS-LSGKEK--------------GMEENYQLWFESFT  175 (200)
T ss_dssp             TTSEEEEEEEETCHHHHHHTTCCHHHHHHTCEEEEEEEEE-ECCC-CC--CT--------------TCCCCHHHHHHHHT
T ss_pred             CCCCcChhhHhhHHHhhhhhHHHHHHHHHHhCCCCEEEEe-ChHH-hcCCCc--------------chhhhHHHHHHHhc
Confidence            4678999999999999977778888999999999866653 3221 100100              11111234566666


Q ss_pred             HhCCCcEEEEeecCcEEEEEEEcC
Q 019861          308 RACGLVDFKCTRNRGFVMFTATKP  331 (334)
Q Consensus       308 ~~~Gf~~v~~~~~g~~~~~~a~K~  331 (334)
                       ...+.+++....|.-.+++.+|.
T Consensus       176 -~~~~~~~~~~~~~nEl~y~~~~~  198 (200)
T 3fzg_A          176 -KGWIKILDSKVIGNELVYITSGF  198 (200)
T ss_dssp             -TTTSCEEEEEEETTEEEEEECCC
T ss_pred             -cCcceeeeeeeeCceEEEEEecc
Confidence             56677788877777777776664

>3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus}

Probab=99.56  E-value=1.3e-13  Score=117.99  Aligned_cols=119  Identities=18%  Similarity=0.189  Sum_probs=93.7

Q ss_pred             HHHHHcccCCCCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCC----------C----C-CCC
Q 019861          166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES----------N----F-PKD  230 (334)
Q Consensus       166 ~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~----------~----~-~~~  230 (334)
                      ...+...+...++.+|||+|||+|.++..+++.+  .+|+|+|+++.+++.|+++.....          .    + ...
T Consensus        44 ~~~~l~~l~~~~~~~vLDlGcG~G~~~~~la~~~--~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~  121 (204)
T 3njr_A           44 RALTLAALAPRRGELLWDIGGGSGSVSVEWCLAG--GRAITIEPRADRIENIQKNIDTYGLSPRMRAVQGTAPAALADLP  121 (204)
T ss_dssp             HHHHHHHHCCCTTCEEEEETCTTCHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCTTGGGTTSC
T ss_pred             HHHHHHhcCCCCCCEEEEecCCCCHHHHHHHHcC--CEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEeCchhhhcccCC
Confidence            3445556666778899999999999999999884  499999999999999998764221          1    1 234


Q ss_pred             CceEEEeCccccCCCCHHHHHHHHHHcccCCcEEEEEEeccCCCCCchHHHHHHHHHhhhhcCccCCCCHHHHHHHHHhC
Q 019861          231 SIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLCRAC  310 (334)
Q Consensus       231 ~fD~V~~~~vl~h~~d~~~~L~~i~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~l~~ll~~~  310 (334)
                      .||+|++...+    ++. +++++.++|+|||++++.....+                          +..++.+++++.
T Consensus       122 ~~D~v~~~~~~----~~~-~l~~~~~~LkpgG~lv~~~~~~~--------------------------~~~~~~~~l~~~  170 (204)
T 3njr_A          122 LPEAVFIGGGG----SQA-LYDRLWEWLAPGTRIVANAVTLE--------------------------SETLLTQLHARH  170 (204)
T ss_dssp             CCSEEEECSCC----CHH-HHHHHHHHSCTTCEEEEEECSHH--------------------------HHHHHHHHHHHH
T ss_pred             CCCEEEECCcc----cHH-HHHHHHHhcCCCcEEEEEecCcc--------------------------cHHHHHHHHHhC
Confidence            79999988754    566 99999999999999999776531                          345778889999


Q ss_pred             CCcEEEE
Q 019861          311 GLVDFKC  317 (334)
Q Consensus       311 Gf~~v~~  317 (334)
                      |+++...
T Consensus       171 g~~i~~i  177 (204)
T 3njr_A          171 GGQLLRI  177 (204)
T ss_dssp             CSEEEEE
T ss_pred             CCcEEEE
Confidence            9987663

>2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A

Probab=99.56  E-value=1.7e-14  Score=120.32  Aligned_cols=107  Identities=16%  Similarity=0.143  Sum_probs=85.9

Q ss_pred             cCCCCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcC----------CCC---CCCCceEEEeCc
Q 019861          173 LKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQE----------SNF---PKDSIDAVHAGA  239 (334)
Q Consensus       173 l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~----------~~~---~~~~fD~V~~~~  239 (334)
                      ++..++.+|||+|||.                +++|+|+.|++.|+++....          .++   ++++||+|++..
T Consensus         8 ~g~~~g~~vL~~~~g~----------------v~vD~s~~ml~~a~~~~~~~~~~~~~d~~~~~~~~~~~~~fD~V~~~~   71 (176)
T 2ld4_A            8 FGISAGQFVAVVWDKS----------------SPVEALKGLVDKLQALTGNEGRVSVENIKQLLQSAHKESSFDIILSGL   71 (176)
T ss_dssp             TTCCTTSEEEEEECTT----------------SCHHHHHHHHHHHHHHTTTTSEEEEEEGGGGGGGCCCSSCEEEEEECC
T ss_pred             cCCCCCCEEEEecCCc----------------eeeeCCHHHHHHHHHhcccCcEEEEechhcCccccCCCCCEeEEEECC
Confidence            3456689999999986                13999999999999876421          133   788999999999


Q ss_pred             cccCC-CCHHHHHHHHHHcccCCcEEEEEEeccCCCCCchHHHHHHHHHhhhhcCccCCCCHHHHHHHHHhCCC
Q 019861          240 AIHCW-SSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLCRACGL  312 (334)
Q Consensus       240 vl~h~-~d~~~~L~~i~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~l~~ll~~~Gf  312 (334)
                      +++|+ +++..+|++++++|||||++++..+......                 ......+.+++.++|+++||
T Consensus        72 ~l~~~~~~~~~~l~~~~r~LkpgG~l~~~~~~~~~~~-----------------~~~~~~~~~~~~~~l~~aGf  128 (176)
T 2ld4_A           72 VPGSTTLHSAEILAEIARILRPGGCLFLKEPVETAVD-----------------NNSKVKTASKLCSALTLSGL  128 (176)
T ss_dssp             STTCCCCCCHHHHHHHHHHEEEEEEEEEEEEEESSSC-----------------SSSSSCCHHHHHHHHHHTTC
T ss_pred             hhhhcccCHHHHHHHHHHHCCCCEEEEEEcccccccc-----------------cccccCCHHHHHHHHHHCCC
Confidence            99999 8999999999999999999999777543210                 02234578999999999999

>2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A*

Probab=99.55  E-value=5.1e-14  Score=126.16  Aligned_cols=139  Identities=11%  Similarity=0.068  Sum_probs=104.9

Q ss_pred             HHHHHHHcccCCCCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCC-------------CCCCC
Q 019861          164 KEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES-------------NFPKD  230 (334)
Q Consensus       164 ~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~-------------~~~~~  230 (334)
                      ...+.+...+. .++.+|||+|||+|.++..++...+..+++|+|+|+.+++.++++.....             +++++
T Consensus        97 ~l~~~~l~~~~-~~~~~vLDlG~GsG~~~~~la~~~~~~~v~~vD~s~~~l~~a~~n~~~~~~~~v~~~~~d~~~~~~~~  175 (276)
T 2b3t_A           97 CLVEQALARLP-EQPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLAIKNIHILQSDWFSALAGQ  175 (276)
T ss_dssp             HHHHHHHHHSC-SSCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCSTTGGGTTC
T ss_pred             HHHHHHHHhcc-cCCCEEEEecCCccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEcchhhhcccC
Confidence            34455555554 45679999999999999999988667799999999999999998764211             23367


Q ss_pred             CceEEEeC-------------ccccCCC------------CHHHHHHHHHHcccCCcEEEEEEeccCCCCCchHHHHHHH
Q 019861          231 SIDAVHAG-------------AAIHCWS------------SPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLR  285 (334)
Q Consensus       231 ~fD~V~~~-------------~vl~h~~------------d~~~~L~~i~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~  285 (334)
                      +||+|+++             .+++|.+            +...+++++.++|+|||++++...                
T Consensus       176 ~fD~Iv~npPy~~~~~~~l~~~v~~~~p~~al~~~~~g~~~~~~~l~~~~~~LkpgG~l~~~~~----------------  239 (276)
T 2b3t_A          176 QFAMIVSNPPYIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLEHG----------------  239 (276)
T ss_dssp             CEEEEEECCCCBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEEECC----------------
T ss_pred             CccEEEECCCCCCccccccChhhhhcCcHHHHcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEEC----------------
Confidence            89999998             4555544            346789999999999999998632                


Q ss_pred             HHhhhhcCccCCCCHHHHHHHHHhCCCcEEEEe--ecCcEEEEEEEc
Q 019861          286 QNMMQISGSYTFLSEREIEDLCRACGLVDFKCT--RNRGFVMFTATK  330 (334)
Q Consensus       286 ~~~~~~~~~~~~~t~~~l~~ll~~~Gf~~v~~~--~~g~~~~~~a~K  330 (334)
                                 +.+.+++.++++++||+.++..  ..|.--+++++|
T Consensus       240 -----------~~~~~~~~~~l~~~Gf~~v~~~~d~~g~~r~~~~~~  275 (276)
T 2b3t_A          240 -----------WQQGEAVRQAFILAGYHDVETCRDYGDNERVTLGRY  275 (276)
T ss_dssp             -----------SSCHHHHHHHHHHTTCTTCCEEECTTSSEEEEEEEC
T ss_pred             -----------chHHHHHHHHHHHCCCcEEEEEecCCCCCcEEEEEE
Confidence                       2357789999999999876643  345555666654

>1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13

Probab=99.55  E-value=2.5e-14  Score=128.11  Aligned_cols=121  Identities=18%  Similarity=0.167  Sum_probs=94.4

Q ss_pred             HHHHcccCCCCCCcEEEECCCcCHHHHHHHHc-CCCCeEEEEeCCHHHHHHHHHHHhcC-C-------------CCCCCC
Q 019861          167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQQE-S-------------NFPKDS  231 (334)
Q Consensus       167 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~~v~giD~s~~~~~~a~~~~~~~-~-------------~~~~~~  231 (334)
                      ..+...+...++.+|||+|||+|.++..+++. ++..+++|+|+++.+++.+++++... +             ++++++
T Consensus       100 ~~~~~~~~~~~~~~VLD~G~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~g~~~v~~~~~d~~~~~~~~~  179 (275)
T 1yb2_A          100 SYIIMRCGLRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIADFISDQM  179 (275)
T ss_dssp             ------CCCCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTTCCCSCC
T ss_pred             HHHHHHcCCCCcCEEEEecCCCCHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECchhccCcCCC
Confidence            35556666777889999999999999999987 55569999999999999999887543 1             245678


Q ss_pred             ceEEEeCccccCCCCHHHHHHHHHHcccCCcEEEEEEeccCCCCCchHHHHHHHHHhhhhcCccCCCCHHHHHHHHHhCC
Q 019861          232 IDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLCRACG  311 (334)
Q Consensus       232 fD~V~~~~vl~h~~d~~~~L~~i~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~l~~ll~~~G  311 (334)
                      ||+|++     |++++..+|+++.++|+|||++++.++...                          ..+++.+.+++.|
T Consensus       180 fD~Vi~-----~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~--------------------------~~~~~~~~l~~~G  228 (275)
T 1yb2_A          180 YDAVIA-----DIPDPWNHVQKIASMMKPGSVATFYLPNFD--------------------------QSEKTVLSLSASG  228 (275)
T ss_dssp             EEEEEE-----CCSCGGGSHHHHHHTEEEEEEEEEEESSHH--------------------------HHHHHHHHSGGGT
T ss_pred             ccEEEE-----cCcCHHHHHHHHHHHcCCCCEEEEEeCCHH--------------------------HHHHHHHHHHHCC
Confidence            999998     678899999999999999999999886521                          1346777788899


Q ss_pred             CcEEEEe
Q 019861          312 LVDFKCT  318 (334)
Q Consensus       312 f~~v~~~  318 (334)
                      |..++..
T Consensus       229 f~~~~~~  235 (275)
T 1yb2_A          229 MHHLETV  235 (275)
T ss_dssp             EEEEEEE
T ss_pred             CeEEEEE
Confidence            9877643

>3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides}

Probab=99.55  E-value=3.2e-14  Score=125.99  Aligned_cols=103  Identities=14%  Similarity=0.132  Sum_probs=86.1

Q ss_pred             HHHHHcccCCCCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCC--------CC--C---CCCc
Q 019861          166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES--------NF--P---KDSI  232 (334)
Q Consensus       166 ~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~--------~~--~---~~~f  232 (334)
                      .+.+...+...++.+|||||||+|.++..+++.+.  +|+|+|+|+.|++.++++.....        ..  +   +++|
T Consensus        34 ~~~il~~l~l~~g~~VLDlGcGtG~~a~~La~~g~--~V~gvD~S~~ml~~Ar~~~~~~~v~~~~~~~~~~~~~~~~~~f  111 (261)
T 3iv6_A           34 RENDIFLENIVPGSTVAVIGASTRFLIEKALERGA--SVTVFDFSQRMCDDLAEALADRCVTIDLLDITAEIPKELAGHF  111 (261)
T ss_dssp             HHHHHHTTTCCTTCEEEEECTTCHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHTSSSCCEEEECCTTSCCCGGGTTCC
T ss_pred             HHHHHHhcCCCCcCEEEEEeCcchHHHHHHHhcCC--EEEEEECCHHHHHHHHHHHHhccceeeeeecccccccccCCCc
Confidence            34556667777789999999999999999999876  99999999999999999865421        12  1   4689


Q ss_pred             eEEEeCccccCCCC--HHHHHHHHHHcccCCcEEEEEEecc
Q 019861          233 DAVHAGAAIHCWSS--PSTGVAEISRVLRPGGVFVGTTYIV  271 (334)
Q Consensus       233 D~V~~~~vl~h~~d--~~~~L~~i~r~LkpgG~lii~~~~~  271 (334)
                      |+|++..+++|+..  ...+++++.++| |||+++++....
T Consensus       112 D~Vv~~~~l~~~~~~~~~~~l~~l~~lL-PGG~l~lS~~~g  151 (261)
T 3iv6_A          112 DFVLNDRLINRFTTEEARRACLGMLSLV-GSGTVRASVKLG  151 (261)
T ss_dssp             SEEEEESCGGGSCHHHHHHHHHHHHHHH-TTSEEEEEEEBS
T ss_pred             cEEEEhhhhHhCCHHHHHHHHHHHHHhC-cCcEEEEEeccC
Confidence            99999999999864  457999999999 999999987653

>3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP}

Probab=99.55  E-value=9.9e-15  Score=125.92  Aligned_cols=136  Identities=15%  Similarity=0.131  Sum_probs=91.4

Q ss_pred             CCCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhc----C--------------CCCCCCCceEEE
Q 019861          175 PVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQ----E--------------SNFPKDSIDAVH  236 (334)
Q Consensus       175 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~----~--------------~~~~~~~fD~V~  236 (334)
                      ..++.+|||||||+|.++..+++.++..+|+|+|+|+.+++.+.+....    .              .+++++. |.|.
T Consensus        25 ~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~~~~~a~~~~~~~~~~~v~~~~~d~~~l~~~~~~-d~v~  103 (218)
T 3mq2_A           25 SQYDDVVLDVGTGDGKHPYKVARQNPSRLVVALDADKSRMEKISAKAAAKPAKGGLPNLLYLWATAERLPPLSGV-GELH  103 (218)
T ss_dssp             TTSSEEEEEESCTTCHHHHHHHHHCTTEEEEEEESCGGGGHHHHHHHTSCGGGTCCTTEEEEECCSTTCCSCCCE-EEEE
T ss_pred             ccCCCEEEEecCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhhhhcCCCceEEEecchhhCCCCCCC-CEEE
Confidence            4567899999999999999999997777999999999988864322211    1              1344444 6665


Q ss_pred             e---Cccc--cCCCCHHHHHHHHHHcccCCcEEEEEEeccCCCCCchHHHHHHHHHhhhhcCccCCCCHHHHHHHHHhCC
Q 019861          237 A---GAAI--HCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLCRACG  311 (334)
Q Consensus       237 ~---~~vl--~h~~d~~~~L~~i~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~l~~ll~~~G  311 (334)
                      .   +..+  +|++++..+|++++++|||||++++........... +.       ....+.....+..+.+..+++++|
T Consensus       104 ~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~-~~-------~~~~~~~~~~~~~~~l~~~l~~aG  175 (218)
T 3mq2_A          104 VLMPWGSLLRGVLGSSPEMLRGMAAVCRPGASFLVALNLHAWRPSV-PE-------VGEHPEPTPDSADEWLAPRYAEAG  175 (218)
T ss_dssp             EESCCHHHHHHHHTSSSHHHHHHHHTEEEEEEEEEEEEGGGBTTBC-GG-------GTTCCCCCHHHHHHHHHHHHHHTT
T ss_pred             EEccchhhhhhhhccHHHHHHHHHHHcCCCcEEEEEeccccccccc-cc-------cccCCccchHHHHHHHHHHHHHcC
Confidence            3   3334  388899999999999999999999966543211111 10       001011111122455888999999


Q ss_pred             CcEEEEee
Q 019861          312 LVDFKCTR  319 (334)
Q Consensus       312 f~~v~~~~  319 (334)
                      |++.+...
T Consensus       176 f~i~~~~~  183 (218)
T 3mq2_A          176 WKLADCRY  183 (218)
T ss_dssp             EEEEEEEE
T ss_pred             CCceeeec
Confidence            99887543

>1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=99.55  E-value=7.8e-15  Score=128.31  Aligned_cols=94  Identities=12%  Similarity=0.263  Sum_probs=74.5

Q ss_pred             CCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCC---------------CCCCCCceEEEe-Cc
Q 019861          176 VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES---------------NFPKDSIDAVHA-GA  239 (334)
Q Consensus       176 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~---------------~~~~~~fD~V~~-~~  239 (334)
                      .++.+|||||||+|.++..+++.+. .+++|+|+|+.+++.|+++.....               ++++++||+|++ .+
T Consensus        59 ~~~~~vLDiGcGtG~~~~~l~~~~~-~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~V~~d~~  137 (236)
T 1zx0_A           59 SKGGRVLEVGFGMAIAASKVQEAPI-DEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTLPDGHFDGILYDTY  137 (236)
T ss_dssp             TTCEEEEEECCTTSHHHHHHHTSCE-EEEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGGSCTTCEEEEEECCC
T ss_pred             CCCCeEEEEeccCCHHHHHHHhcCC-CeEEEEcCCHHHHHHHHHHHHhcCCCeEEEecCHHHhhcccCCCceEEEEECCc
Confidence            3578999999999999999977653 489999999999999999764321               567889999999 55


Q ss_pred             cc--c--CCCCHHHHHHHHHHcccCCcEEEEEEec
Q 019861          240 AI--H--CWSSPSTGVAEISRVLRPGGVFVGTTYI  270 (334)
Q Consensus       240 vl--~--h~~d~~~~L~~i~r~LkpgG~lii~~~~  270 (334)
                      .+  +  |..++..++++++++|||||++++.+..
T Consensus       138 ~~~~~~~~~~~~~~~l~~~~r~LkpgG~l~~~~~~  172 (236)
T 1zx0_A          138 PLSEETWHTHQFNFIKNHAFRLLKPGGVLTYCNLT  172 (236)
T ss_dssp             CCBGGGTTTHHHHHHHHTHHHHEEEEEEEEECCHH
T ss_pred             ccchhhhhhhhHHHHHHHHHHhcCCCeEEEEEecC
Confidence            53  1  2223447899999999999999986543

>1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3

Probab=99.54  E-value=1.4e-13  Score=118.32  Aligned_cols=133  Identities=14%  Similarity=0.072  Sum_probs=90.5

Q ss_pred             cCCCCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcC----------------CCCCCCCceEEE
Q 019861          173 LKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQE----------------SNFPKDSIDAVH  236 (334)
Q Consensus       173 l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~----------------~~~~~~~fD~V~  236 (334)
                      +...++.+|||+|||+|.++..+++..+..+|+|+|+|+.+++.+.+.....                .++ .++||+|+
T Consensus        53 ~~~~~g~~VLDlGcGtG~~~~~la~~~~~~~V~gvD~s~~~l~~~~~~a~~~~~v~~~~~d~~~~~~~~~~-~~~fD~V~  131 (210)
T 1nt2_A           53 LKLRGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRERNNIIPLLFDASKPWKYSGI-VEKVDLIY  131 (210)
T ss_dssp             CCCCSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHCSSEEEECSCTTCGGGTTTT-CCCEEEEE
T ss_pred             cCCCCCCEEEEECCcCCHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhcCCCeEEEEcCCCCchhhccc-ccceeEEE
Confidence            3445688999999999999999988754569999999998765544432211                122 37899999


Q ss_pred             eCccccCCCCHHHHHHHHHHcccCCcEEEEEEeccCCCCCchHHHHHHHHHhhhhcCccCCCCHHHHH----HHHHhCCC
Q 019861          237 AGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIE----DLCRACGL  312 (334)
Q Consensus       237 ~~~vl~h~~d~~~~L~~i~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~l~----~ll~~~Gf  312 (334)
                      +.. .++ .+...++++++++|||||++++......                     .....+.+++.    +.++++ |
T Consensus       132 ~~~-~~~-~~~~~~l~~~~r~LkpgG~l~i~~~~~~---------------------~~~~~~~~~~~~~~~~~l~~~-f  187 (210)
T 1nt2_A          132 QDI-AQK-NQIEILKANAEFFLKEKGEVVIMVKARS---------------------IDSTAEPEEVFKSVLKEMEGD-F  187 (210)
T ss_dssp             ECC-CST-THHHHHHHHHHHHEEEEEEEEEEEEHHH---------------------HCTTSCHHHHHHHHHHHHHTT-S
T ss_pred             Eec-cCh-hHHHHHHHHHHHHhCCCCEEEEEEecCC---------------------ccccCCHHHHHHHHHHHHHhh-c
Confidence            972 222 2334569999999999999999864320                     00112344432    237888 9


Q ss_pred             cEEEEeecC----cEEEEEEEc
Q 019861          313 VDFKCTRNR----GFVMFTATK  330 (334)
Q Consensus       313 ~~v~~~~~g----~~~~~~a~K  330 (334)
                      ++++.....    .+++++++|
T Consensus       188 ~~~~~~~~~p~~~~h~~~~~~~  209 (210)
T 1nt2_A          188 KIVKHGSLMPYHRDHIFIHAYR  209 (210)
T ss_dssp             EEEEEEECTTTCTTEEEEEEEE
T ss_pred             EEeeeecCCCCCCCcEEEEEEc
Confidence            999976552    456777765

>3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi}

Probab=99.54  E-value=9.4e-14  Score=115.35  Aligned_cols=112  Identities=12%  Similarity=0.048  Sum_probs=89.2

Q ss_pred             CCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHh---c--CCCCCCCCceEEEeCccccCCCCH---
Q 019861          176 VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQ---Q--ESNFPKDSIDAVHAGAAIHCWSSP---  247 (334)
Q Consensus       176 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~---~--~~~~~~~~fD~V~~~~vl~h~~d~---  247 (334)
                      .++.+|||+|||+|.++..+++.+   +++|+|+|+.+++. ..+..   .  ..++++++||+|+++..+++..++   
T Consensus        22 ~~~~~vLD~GcG~G~~~~~l~~~~---~v~gvD~s~~~~~~-~~~~~~~~~d~~~~~~~~~fD~i~~n~~~~~~~~~~~~   97 (170)
T 3q87_B           22 LEMKIVLDLGTSTGVITEQLRKRN---TVVSTDLNIRALES-HRGGNLVRADLLCSINQESVDVVVFNPPYVPDTDDPII   97 (170)
T ss_dssp             CCSCEEEEETCTTCHHHHHHTTTS---EEEEEESCHHHHHT-CSSSCEEECSTTTTBCGGGCSEEEECCCCBTTCCCTTT
T ss_pred             CCCCeEEEeccCccHHHHHHHhcC---cEEEEECCHHHHhc-ccCCeEEECChhhhcccCCCCEEEECCCCccCCccccc
Confidence            456799999999999999999887   99999999999987 11110   0  014456899999999888876655   


Q ss_pred             ------HHHHHHHHHcccCCcEEEEEEeccCCCCCchHHHHHHHHHhhhhcCccCCCCHHHHHHHHHhCCCcEEEEe
Q 019861          248 ------STGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLCRACGLVDFKCT  318 (334)
Q Consensus       248 ------~~~L~~i~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~l~~ll~~~Gf~~v~~~  318 (334)
                            ..+++++.+.| |||++++..+..                          ...+++.++++++||+.+...
T Consensus        98 ~~~~~~~~~~~~~~~~l-pgG~l~~~~~~~--------------------------~~~~~l~~~l~~~gf~~~~~~  147 (170)
T 3q87_B           98 GGGYLGREVIDRFVDAV-TVGMLYLLVIEA--------------------------NRPKEVLARLEERGYGTRILK  147 (170)
T ss_dssp             BCCGGGCHHHHHHHHHC-CSSEEEEEEEGG--------------------------GCHHHHHHHHHHTTCEEEEEE
T ss_pred             cCCcchHHHHHHHHhhC-CCCEEEEEEecC--------------------------CCHHHHHHHHHHCCCcEEEEE
Confidence                  57889999999 999999987653                          146789999999999877643

>3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus}

Probab=99.54  E-value=1.7e-13  Score=119.06  Aligned_cols=130  Identities=12%  Similarity=0.007  Sum_probs=96.3

Q ss_pred             CCCCcEEEECCC-cCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCC--------------CCCCCCceEEEeCcc
Q 019861          176 VLGGNIIDASCG-SGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES--------------NFPKDSIDAVHAGAA  240 (334)
Q Consensus       176 ~~~~~vLDiGcG-~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~--------------~~~~~~fD~V~~~~v  240 (334)
                      .++.+|||+||| +|.++..++... ..+|+|+|+++.+++.++++.....              ++++++||+|+++-.
T Consensus        54 ~~~~~vLDlG~G~~G~~~~~la~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~I~~npp  132 (230)
T 3evz_A           54 RGGEVALEIGTGHTAMMALMAEKFF-NCKVTATEVDEEFFEYARRNIERNNSNVRLVKSNGGIIKGVVEGTFDVIFSAPP  132 (230)
T ss_dssp             CSSCEEEEECCTTTCHHHHHHHHHH-CCEEEEEECCHHHHHHHHHHHHHTTCCCEEEECSSCSSTTTCCSCEEEEEECCC
T ss_pred             CCCCEEEEcCCCHHHHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHHHHhCCCcEEEeCCchhhhhcccCceeEEEECCC
Confidence            457899999999 999999999884 3499999999999999998765321              345689999999866


Q ss_pred             ccCCCC-------------------HHHHHHHHHHcccCCcEEEEEEeccCCCCCchHHHHHHHHHhhhhcCccCCCCHH
Q 019861          241 IHCWSS-------------------PSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSER  301 (334)
Q Consensus       241 l~h~~d-------------------~~~~L~~i~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~  301 (334)
                      +++..+                   ...+++++.++|+|||++++..+...                         ...+
T Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~-------------------------~~~~  187 (230)
T 3evz_A          133 YYDKPLGRVLTEREAIGGGKYGEEFSVKLLEEAFDHLNPGGKVALYLPDKE-------------------------KLLN  187 (230)
T ss_dssp             CC---------------CCSSSCHHHHHHHHHHGGGEEEEEEEEEEEESCH-------------------------HHHH
T ss_pred             CcCCccccccChhhhhccCccchHHHHHHHHHHHHHhCCCeEEEEEecccH-------------------------hHHH
Confidence            554433                   36789999999999999999876521                         1246


Q ss_pred             HHHHHHHhCCCcEEEEeec-C--cEEEEEEEcC
Q 019861          302 EIEDLCRACGLVDFKCTRN-R--GFVMFTATKP  331 (334)
Q Consensus       302 ~l~~ll~~~Gf~~v~~~~~-g--~~~~~~a~K~  331 (334)
                      ++.+++++.||++...... |  ...++..+|.
T Consensus       188 ~~~~~l~~~g~~~~~~~~~~g~~~~~~l~f~~~  220 (230)
T 3evz_A          188 VIKERGIKLGYSVKDIKFKVGTRWRHSLIFFKG  220 (230)
T ss_dssp             HHHHHHHHTTCEEEEEEECCCC-CEEEEEEECC
T ss_pred             HHHHHHHHcCCceEEEEecCCCeEEEEEEEecc
Confidence            8889999999976664322 2  3444444443

>3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans}

Probab=99.53  E-value=2.5e-14  Score=124.33  Aligned_cols=108  Identities=17%  Similarity=0.204  Sum_probs=87.7

Q ss_pred             CCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhc----------CCCCC-CCCceEEEeCccccCCC
Q 019861          177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQ----------ESNFP-KDSIDAVHAGAAIHCWS  245 (334)
Q Consensus       177 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~----------~~~~~-~~~fD~V~~~~vl~h~~  245 (334)
                      ++.+|||||||+|.++..+++.+.  +|+|+|+++.+++.++++...          ..+++ +++||+|++.      .
T Consensus        48 ~~~~vLDiGcG~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~~~fD~v~~~------~  119 (226)
T 3m33_A           48 PQTRVLEAGCGHGPDAARFGPQAA--RWAAYDFSPELLKLARANAPHADVYEWNGKGELPAGLGAPFGLIVSR------R  119 (226)
T ss_dssp             TTCEEEEESCTTSHHHHHHGGGSS--EEEEEESCHHHHHHHHHHCTTSEEEECCSCSSCCTTCCCCEEEEEEE------S
T ss_pred             CCCeEEEeCCCCCHHHHHHHHcCC--EEEEEECCHHHHHHHHHhCCCceEEEcchhhccCCcCCCCEEEEEeC------C
Confidence            478999999999999999999865  999999999999999987321          12455 7899999987      4


Q ss_pred             CHHHHHHHHHHcccCCcEEEEEEeccCCCCCchHHHHHHHHHhhhhcCccCCCCHHHHHHHHHhCCCcEEEEee
Q 019861          246 SPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLCRACGLVDFKCTR  319 (334)
Q Consensus       246 d~~~~L~~i~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~l~~ll~~~Gf~~v~~~~  319 (334)
                      ++..+|+++.++|||||+++  .                         .....+.+++.++++++||+++....
T Consensus       120 ~~~~~l~~~~~~LkpgG~l~--~-------------------------~~~~~~~~~~~~~l~~~Gf~~~~~~~  166 (226)
T 3m33_A          120 GPTSVILRLPELAAPDAHFL--Y-------------------------VGPRLNVPEVPERLAAVGWDIVAEDH  166 (226)
T ss_dssp             CCSGGGGGHHHHEEEEEEEE--E-------------------------EESSSCCTHHHHHHHHTTCEEEEEEE
T ss_pred             CHHHHHHHHHHHcCCCcEEE--E-------------------------eCCcCCHHHHHHHHHHCCCeEEEEEe
Confidence            67788999999999999999  1                         11234566888999999998876443

>2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii}

Probab=99.53  E-value=3.4e-13  Score=112.32  Aligned_cols=120  Identities=17%  Similarity=0.194  Sum_probs=95.4

Q ss_pred             HHHHHHHHcccCCCCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCC-------------CCCC
Q 019861          163 EKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES-------------NFPK  229 (334)
Q Consensus       163 ~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~-------------~~~~  229 (334)
                      ....+.+...+...++.+|||+|||+|.++..++..  ..+++|+|+++.+++.+++++....             ++++
T Consensus        21 ~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~   98 (183)
T 2yxd_A           21 EEIRAVSIGKLNLNKDDVVVDVGCGSGGMTVEIAKR--CKFVYAIDYLDGAIEVTKQNLAKFNIKNCQIIKGRAEDVLDK   98 (183)
T ss_dssp             HHHHHHHHHHHCCCTTCEEEEESCCCSHHHHHHHTT--SSEEEEEECSHHHHHHHHHHHHHTTCCSEEEEESCHHHHGGG
T ss_pred             HHHHHHHHHHcCCCCCCEEEEeCCCCCHHHHHHHhc--CCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEECCccccccC
Confidence            344455666666667889999999999999999983  4599999999999999998865321             2445


Q ss_pred             CCceEEEeCccccCCCCHHHHHHHHHHcccCCcEEEEEEeccCCCCCchHHHHHHHHHhhhhcCccCCCCHHHHHHHHHh
Q 019861          230 DSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLCRA  309 (334)
Q Consensus       230 ~~fD~V~~~~vl~h~~d~~~~L~~i~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~l~~ll~~  309 (334)
                      ++||+|++..+    .++..+++++.++  |||.+++.++..+                          +..++.+++++
T Consensus        99 ~~~D~i~~~~~----~~~~~~l~~~~~~--~gG~l~~~~~~~~--------------------------~~~~~~~~l~~  146 (183)
T 2yxd_A           99 LEFNKAFIGGT----KNIEKIIEILDKK--KINHIVANTIVLE--------------------------NAAKIINEFES  146 (183)
T ss_dssp             CCCSEEEECSC----SCHHHHHHHHHHT--TCCEEEEEESCHH--------------------------HHHHHHHHHHH
T ss_pred             CCCcEEEECCc----ccHHHHHHHHhhC--CCCEEEEEecccc--------------------------cHHHHHHHHHH
Confidence            78999999988    6788999999998  9999999886531                          24578889999


Q ss_pred             CCCcEEE
Q 019861          310 CGLVDFK  316 (334)
Q Consensus       310 ~Gf~~v~  316 (334)
                      +||.+..
T Consensus       147 ~g~~~~~  153 (183)
T 2yxd_A          147 RGYNVDA  153 (183)
T ss_dssp             TTCEEEE
T ss_pred             cCCeEEE
Confidence            9986543

>3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C*

Probab=99.53  E-value=6.2e-14  Score=123.82  Aligned_cols=123  Identities=23%  Similarity=0.351  Sum_probs=99.8

Q ss_pred             HHHHHHHHcccCCCCCCcEEEECCCcCHHHHHHHHc-CCCCeEEEEeCCHHHHHHHHHHHhcC--------------CCC
Q 019861          163 EKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQQE--------------SNF  227 (334)
Q Consensus       163 ~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~~v~giD~s~~~~~~a~~~~~~~--------------~~~  227 (334)
                      ......+...+...++.+|||+|||+|.++..++.. ++..+++++|+++.+++.|++++...              ..+
T Consensus        79 ~~~~~~i~~~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~  158 (255)
T 3mb5_A           79 PKDAALIVAYAGISPGDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAKLAWENIKWAGFDDRVTIKLKDIYEGI  158 (255)
T ss_dssp             HHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHTCTTTEEEECSCGGGCC
T ss_pred             HhHHHHHHHhhCCCCCCEEEEecCCchHHHHHHHHHhCCCeEEEEEecCHHHHHHHHHHHHHcCCCCceEEEECchhhcc
Confidence            444556777777778899999999999999999998 76779999999999999999876421              135


Q ss_pred             CCCCceEEEeCccccCCCCHHHHHHHHHHcccCCcEEEEEEeccCCCCCchHHHHHHHHHhhhhcCccCCCCHHHHHHHH
Q 019861          228 PKDSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLC  307 (334)
Q Consensus       228 ~~~~fD~V~~~~vl~h~~d~~~~L~~i~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~l~~ll  307 (334)
                      ++++||+|++     +.+++..+++++.++|+|||++++..+..+                          ..+++.+++
T Consensus       159 ~~~~~D~v~~-----~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~--------------------------~~~~~~~~l  207 (255)
T 3mb5_A          159 EEENVDHVIL-----DLPQPERVVEHAAKALKPGGFFVAYTPCSN--------------------------QVMRLHEKL  207 (255)
T ss_dssp             CCCSEEEEEE-----CSSCGGGGHHHHHHHEEEEEEEEEEESSHH--------------------------HHHHHHHHH
T ss_pred             CCCCcCEEEE-----CCCCHHHHHHHHHHHcCCCCEEEEEECCHH--------------------------HHHHHHHHH
Confidence            6788999998     567888999999999999999999876531                          244677888


Q ss_pred             HhCC--CcEEE
Q 019861          308 RACG--LVDFK  316 (334)
Q Consensus       308 ~~~G--f~~v~  316 (334)
                      ++.|  |..++
T Consensus       208 ~~~g~~f~~~~  218 (255)
T 3mb5_A          208 REFKDYFMKPR  218 (255)
T ss_dssp             HHTGGGBSCCE
T ss_pred             HHcCCCccccE
Confidence            8888  86665

>3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A*

Probab=99.52  E-value=1.9e-14  Score=131.27  Aligned_cols=136  Identities=17%  Similarity=0.203  Sum_probs=99.4

Q ss_pred             CCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcC---------------------CC----CC--C
Q 019861          177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQE---------------------SN----FP--K  229 (334)
Q Consensus       177 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~---------------------~~----~~--~  229 (334)
                      ++.+|||+|||+|.++..+++.+ ..+++|+|+++.+++.++++....                     .+    ++  +
T Consensus        34 ~~~~VLDlGcG~G~~~~~l~~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~  112 (313)
T 3bgv_A           34 RDITVLDLGCGKGGDLLKWKKGR-INKLVCTDIADVSVKQCQQRYEDMKNRRDSEYIFSAEFITADSSKELLIDKFRDPQ  112 (313)
T ss_dssp             -CCEEEEETCTTTTTHHHHHHTT-CSEEEEEESCHHHHHHHHHHHHHHHSSSCC-CCCEEEEEECCTTTSCSTTTCSSTT
T ss_pred             CCCEEEEECCCCcHHHHHHHhcC-CCEEEEEeCCHHHHHHHHHHHHHhhhcccccccceEEEEEecccccchhhhcccCC
Confidence            46799999999999999998753 469999999999999999875421                     01    32  4


Q ss_pred             CCceEEEeCccccCC-C---CHHHHHHHHHHcccCCcEEEEEEeccCCCCCchHHHHHHHHH-------------hhh--
Q 019861          230 DSIDAVHAGAAIHCW-S---SPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQN-------------MMQ--  290 (334)
Q Consensus       230 ~~fD~V~~~~vl~h~-~---d~~~~L~~i~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~-------------~~~--  290 (334)
                      ++||+|++..++||+ .   ++..+|+++.++|+|||.+++.+++.+.      +...+...             +..  
T Consensus       113 ~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~~~------l~~~~~~~~~~~~~~~~~~~~f~~~~  186 (313)
T 3bgv_A          113 MCFDICSCQFVCHYSFESYEQADMMLRNACERLSPGGYFIGTTPNSFE------LIRRLEASETESFGNEIYTVKFQKKG  186 (313)
T ss_dssp             CCEEEEEEETCGGGGGGSHHHHHHHHHHHHTTEEEEEEEEEEEECHHH------HHHHHTTSSSSEEECSSEEEEESCSS
T ss_pred             CCEEEEEEecchhhccCCHHHHHHHHHHHHHHhCCCcEEEEecCChHH------HHHHHHhhccCccCCeeEEEEeCCCC
Confidence            589999999999887 3   4568999999999999999999986421      11100000             000  


Q ss_pred             ----------------hcCccCCCCHHHHHHHHHhCCCcEEEEee
Q 019861          291 ----------------ISGSYTFLSEREIEDLCRACGLVDFKCTR  319 (334)
Q Consensus       291 ----------------~~~~~~~~t~~~l~~ll~~~Gf~~v~~~~  319 (334)
                                      .......++.+++.+++++.||+++....
T Consensus       187 ~~~~~~~~~~f~l~~~~~~~~~~~~~~~~~~l~~~~G~~~v~~~~  231 (313)
T 3bgv_A          187 DYPLFGCKYDFNLEGVVDVPEFLVYFPLLNEMAKKYNMKLVYKKT  231 (313)
T ss_dssp             CCCSSCCEEEEEEC---CCEEECCCHHHHHHHGGGGTEEEEEEEE
T ss_pred             CCCCccceEEEEECCcccCcceEEcHHHHHHHHHHcCcEEEEecC
Confidence                            00011246789999999999999988553

>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A*

Probab=99.52  E-value=9.7e-14  Score=116.45  Aligned_cols=92  Identities=18%  Similarity=0.218  Sum_probs=71.9

Q ss_pred             CCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCC---------------CCCCCCceEEEeC-cc
Q 019861          177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES---------------NFPKDSIDAVHAG-AA  240 (334)
Q Consensus       177 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~---------------~~~~~~fD~V~~~-~v  240 (334)
                      ++.+|||+|||+|.++..+++.+  .+|+|+|+|+.+++.|+++.....               .+.+++||+|++. ..
T Consensus        22 ~~~~vLDiGcG~G~~~~~la~~~--~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~~~~~l~~~~~~~fD~v~~~~~~   99 (185)
T 3mti_A           22 DESIVVDATMGNGNDTAFLAGLS--KKVYAFDVQEQALGKTSQRLSDLGIENTELILDGHENLDHYVREPIRAAIFNLGY   99 (185)
T ss_dssp             TTCEEEESCCTTSHHHHHHHTTS--SEEEEEESCHHHHHHHHHHHHHHTCCCEEEEESCGGGGGGTCCSCEEEEEEEEC-
T ss_pred             CCCEEEEEcCCCCHHHHHHHHhC--CEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCcHHHHHhhccCCcCEEEEeCCC
Confidence            47899999999999999999884  499999999999999998765311               1446789999987 33


Q ss_pred             ccC-------C-CCHHHHHHHHHHcccCCcEEEEEEec
Q 019861          241 IHC-------W-SSPSTGVAEISRVLRPGGVFVGTTYI  270 (334)
Q Consensus       241 l~h-------~-~d~~~~L~~i~r~LkpgG~lii~~~~  270 (334)
                      +++       . .+...+|+++.++|||||++++....
T Consensus       100 ~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~  137 (185)
T 3mti_A          100 LPSADKSVITKPHTTLEAIEKILDRLEVGGRLAIMIYY  137 (185)
T ss_dssp             ----------CHHHHHHHHHHHHHHEEEEEEEEEEEC-
T ss_pred             CCCcchhcccChhhHHHHHHHHHHhcCCCcEEEEEEeC
Confidence            332       1 23457899999999999999998764

>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A*

Probab=99.52  E-value=6.5e-14  Score=125.43  Aligned_cols=123  Identities=11%  Similarity=-0.000  Sum_probs=88.7

Q ss_pred             HHHHHhHHHhhHhc--------CCCCcHH---HHHHHHcccCCCCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHH
Q 019861          144 FIYERGWRQNFVWG--------GFPGPEK---EFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSEN  212 (334)
Q Consensus       144 ~~~~~~w~~~~~~~--------~~~~~~~---~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~  212 (334)
                      ..++..|.+.+..+        .++....   ..+.-...+...++.+|||||||+|.++..+....+.++|+|+|+++.
T Consensus        78 ~~~E~~wa~~l~~~~~p~~~l~~fpy~~~~~~l~~~E~~la~l~~g~rVLDIGcG~G~~ta~~lA~~~ga~V~gIDis~~  157 (298)
T 3fpf_A           78 MKLEMEKAQEVIESDSPWETLRSFYFYPRYLELLKNEAALGRFRRGERAVFIGGGPLPLTGILLSHVYGMRVNVVEIEPD  157 (298)
T ss_dssp             HHHHHHHHHHHHHCSSHHHHHHTSTTHHHHHHHHHHHHHHTTCCTTCEEEEECCCSSCHHHHHHHHTTCCEEEEEESSHH
T ss_pred             HHHHHHHHHHHhccCChHHhhccCCCcccHHHHHHHHHHHcCCCCcCEEEEECCCccHHHHHHHHHccCCEEEEEECCHH
Confidence            44677777766332        2222222   222222345667799999999999977655444434569999999999


Q ss_pred             HHHHHHHHHhcCC------------CCCCCCceEEEeCccccCCCCHHHHHHHHHHcccCCcEEEEEEe
Q 019861          213 MLKQCYEFVQQES------------NFPKDSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTY  269 (334)
Q Consensus       213 ~~~~a~~~~~~~~------------~~~~~~fD~V~~~~vl~h~~d~~~~L~~i~r~LkpgG~lii~~~  269 (334)
                      +++.|++++...+            .+++++||+|++...   .+++..+++++.++|||||++++...
T Consensus       158 ~l~~Ar~~~~~~gl~~v~~v~gDa~~l~d~~FDvV~~~a~---~~d~~~~l~el~r~LkPGG~Lvv~~~  223 (298)
T 3fpf_A          158 IAELSRKVIEGLGVDGVNVITGDETVIDGLEFDVLMVAAL---AEPKRRVFRNIHRYVDTETRIIYRTY  223 (298)
T ss_dssp             HHHHHHHHHHHHTCCSEEEEESCGGGGGGCCCSEEEECTT---CSCHHHHHHHHHHHCCTTCEEEEEEC
T ss_pred             HHHHHHHHHHhcCCCCeEEEECchhhCCCCCcCEEEECCC---ccCHHHHHHHHHHHcCCCcEEEEEcC
Confidence            9999998865321            244689999998665   57899999999999999999998764

>2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus}

Probab=99.52  E-value=1.8e-13  Score=120.91  Aligned_cols=123  Identities=19%  Similarity=0.176  Sum_probs=98.2

Q ss_pred             HHHHHHHHcccCCCCCCcEEEECCCcCHHHHHHHHc-CCCCeEEEEeCCHHHHHHHHHHHhcC---C------------C
Q 019861          163 EKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQQE---S------------N  226 (334)
Q Consensus       163 ~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~~v~giD~s~~~~~~a~~~~~~~---~------------~  226 (334)
                      ......+...+...++.+|||+|||+|.++..+++. ++..+++++|+++.+++.+++++...   .            +
T Consensus        82 ~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~g~~~v~~~~~d~~~~~  161 (258)
T 2pwy_A           82 PKDASAMVTLLDLAPGMRVLEAGTGSGGLTLFLARAVGEKGLVESYEARPHHLAQAERNVRAFWQVENVRFHLGKLEEAE  161 (258)
T ss_dssp             HHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCCCCEEEEESCGGGCC
T ss_pred             chHHHHHHHHcCCCCCCEEEEECCCcCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCEEEEECchhhcC
Confidence            334456666677777899999999999999999988 66679999999999999999876422   1            2


Q ss_pred             CCCCCceEEEeCccccCCCCHHHHHHHHHHcccCCcEEEEEEeccCCCCCchHHHHHHHHHhhhhcCccCCCCHHHHHHH
Q 019861          227 FPKDSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDL  306 (334)
Q Consensus       227 ~~~~~fD~V~~~~vl~h~~d~~~~L~~i~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~l~~l  306 (334)
                      +++++||+|++     +++++..+|+++.++|+|||++++.++...                          ...++.+.
T Consensus       162 ~~~~~~D~v~~-----~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~--------------------------~~~~~~~~  210 (258)
T 2pwy_A          162 LEEAAYDGVAL-----DLMEPWKVLEKAALALKPDRFLVAYLPNIT--------------------------QVLELVRA  210 (258)
T ss_dssp             CCTTCEEEEEE-----ESSCGGGGHHHHHHHEEEEEEEEEEESCHH--------------------------HHHHHHHH
T ss_pred             CCCCCcCEEEE-----CCcCHHHHHHHHHHhCCCCCEEEEEeCCHH--------------------------HHHHHHHH
Confidence            56678999998     467888999999999999999999886521                          13466677


Q ss_pred             HHhCCCcEEE
Q 019861          307 CRACGLVDFK  316 (334)
Q Consensus       307 l~~~Gf~~v~  316 (334)
                      +++.||..++
T Consensus       211 l~~~gf~~~~  220 (258)
T 2pwy_A          211 AEAHPFRLER  220 (258)
T ss_dssp             HTTTTEEEEE
T ss_pred             HHHCCCceEE
Confidence            8889997765

>3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A*

Probab=99.50  E-value=3e-13  Score=119.80  Aligned_cols=134  Identities=14%  Similarity=0.069  Sum_probs=97.5

Q ss_pred             CCcEEEECCCc--CHHHHH-HHHcCCCCeEEEEeCCHHHHHHHHHHHhcCC---------CCC-----------CCCce-
Q 019861          178 GGNIIDASCGS--GLFSRI-FAKSGLFSLVVALDYSENMLKQCYEFVQQES---------NFP-----------KDSID-  233 (334)
Q Consensus       178 ~~~vLDiGcG~--G~~~~~-l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~---------~~~-----------~~~fD-  233 (334)
                      ..+|||||||.  +.++.. +....+..+|+++|.|+.|++.|++++....         .+.           .+.|| 
T Consensus        79 ~~q~LDLGcG~pT~~~~~~la~~~~P~arVv~VD~sp~mLa~Ar~~l~~~~~~~~~~v~aD~~~~~~~l~~~~~~~~~D~  158 (277)
T 3giw_A           79 IRQFLDIGTGIPTSPNLHEIAQSVAPESRVVYVDNDPIVLTLSQGLLASTPEGRTAYVEADMLDPASILDAPELRDTLDL  158 (277)
T ss_dssp             CCEEEEESCCSCCSSCHHHHHHHHCTTCEEEEEECCHHHHHTTHHHHCCCSSSEEEEEECCTTCHHHHHTCHHHHTTCCT
T ss_pred             CCEEEEeCCCCCcccHHHHHHHHHCCCCEEEEEeCChHHHHHHHHHhccCCCCcEEEEEecccChhhhhcccccccccCc
Confidence            46899999997  334444 4445667899999999999999999876421         111           24466 


Q ss_pred             ----EEEeCccccCCCC---HHHHHHHHHHcccCCcEEEEEEeccCCCCCchHHHHHHHHHhhhhcCccCCCCHHHHHHH
Q 019861          234 ----AVHAGAAIHCWSS---PSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDL  306 (334)
Q Consensus       234 ----~V~~~~vl~h~~d---~~~~L~~i~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~l~~l  306 (334)
                          +|+++.+|||+++   |..+|+++++.|+|||+|++++...+...   .........+........+++.+++..+
T Consensus       159 ~~p~av~~~avLH~l~d~~~p~~~l~~l~~~L~PGG~Lvls~~~~d~~p---~~~~~~~~~~~~~g~p~~~rs~~ei~~~  235 (277)
T 3giw_A          159 TRPVALTVIAIVHFVLDEDDAVGIVRRLLEPLPSGSYLAMSIGTAEFAP---QEVGRVAREYAARNMPMRLRTHAEAEEF  235 (277)
T ss_dssp             TSCCEEEEESCGGGSCGGGCHHHHHHHHHTTSCTTCEEEEEEECCTTSH---HHHHHHHHHHHHTTCCCCCCCHHHHHHT
T ss_pred             CCcchHHhhhhHhcCCchhhHHHHHHHHHHhCCCCcEEEEEeccCCCCH---HHHHHHHHHHHhcCCCCccCCHHHHHHH
Confidence                6889999999997   57899999999999999999998765321   1122222333222224577899999999


Q ss_pred             HHhCCCcEEE
Q 019861          307 CRACGLVDFK  316 (334)
Q Consensus       307 l~~~Gf~~v~  316 (334)
                      |.  ||+.++
T Consensus       236 f~--Glelve  243 (277)
T 3giw_A          236 FE--GLELVE  243 (277)
T ss_dssp             TT--TSEECT
T ss_pred             hC--CCcccC
Confidence            94  998765

>1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20

Probab=99.50  E-value=1.9e-13  Score=119.78  Aligned_cols=128  Identities=14%  Similarity=0.005  Sum_probs=94.8

Q ss_pred             CCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCC--------------CCC---CCCceEEEeC
Q 019861          176 VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES--------------NFP---KDSIDAVHAG  238 (334)
Q Consensus       176 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~--------------~~~---~~~fD~V~~~  238 (334)
                      .++.+|||||||+|.++..++...+..+|+|+|+++.+++.++++.....              +++   +++||+|++.
T Consensus        69 ~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~V~~~  148 (240)
T 1xdz_A           69 NQVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQLENTTFCHDRAETFGQRKDVRESYDIVTAR  148 (240)
T ss_dssp             GGCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEESCHHHHTTCTTTTTCEEEEEEE
T ss_pred             CCCCEEEEecCCCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEeccHHHhcccccccCCccEEEEe
Confidence            35789999999999999999876666799999999999999988654211              222   5789999997


Q ss_pred             ccccCCCCHHHHHHHHHHcccCCcEEEEEEeccCCCCCchHHHHHHHHHhhhhcCccCCCCHHHHHHHHHhCCCcEEEEe
Q 019861          239 AAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLCRACGLVDFKCT  318 (334)
Q Consensus       239 ~vl~h~~d~~~~L~~i~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~l~~ll~~~Gf~~v~~~  318 (334)
                      .    +.++..+++++.++|+|||++++......     ..                   ..+++.+.+++.||++++..
T Consensus       149 ~----~~~~~~~l~~~~~~LkpgG~l~~~~g~~~-----~~-------------------~~~~~~~~l~~~g~~~~~~~  200 (240)
T 1xdz_A          149 A----VARLSVLSELCLPLVKKNGLFVALKAASA-----EE-------------------ELNAGKKAITTLGGELENIH  200 (240)
T ss_dssp             C----CSCHHHHHHHHGGGEEEEEEEEEEECC-C-----HH-------------------HHHHHHHHHHHTTEEEEEEE
T ss_pred             c----cCCHHHHHHHHHHhcCCCCEEEEEeCCCc-----hH-------------------HHHHHHHHHHHcCCeEeEEE
Confidence            6    46789999999999999999988632110     00                   13467788999999887643


Q ss_pred             e------cCcEEEEEEEcC
Q 019861          319 R------NRGFVMFTATKP  331 (334)
Q Consensus       319 ~------~g~~~~~~a~K~  331 (334)
                      .      .+...+++.+|.
T Consensus       201 ~~~~~~~~~~~~l~~~~k~  219 (240)
T 1xdz_A          201 SFKLPIEESDRNIMVIRKI  219 (240)
T ss_dssp             EEECTTTCCEEEEEEEEEC
T ss_pred             EEecCCCCCceEEEEEEec
Confidence            2      234455555553

>4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp}

Probab=99.50  E-value=3.6e-14  Score=121.41  Aligned_cols=139  Identities=17%  Similarity=0.034  Sum_probs=86.3

Q ss_pred             HHHHcccCC-CCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCC------------CCCC----
Q 019861          167 ELMKGYLKP-VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES------------NFPK----  229 (334)
Q Consensus       167 ~~l~~~l~~-~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~------------~~~~----  229 (334)
                      +.+.+.+.. .++.+|||+|||+|.++..+++.++..+++|+|+++.+++.+++++....            ++++    
T Consensus        19 ~~~~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~   98 (215)
T 4dzr_A           19 EEAIRFLKRMPSGTRVIDVGTGSGCIAVSIALACPGVSVTAVDLSMDALAVARRNAERFGAVVDWAAADGIEWLIERAER   98 (215)
T ss_dssp             HHHHHHHTTCCTTEEEEEEESSBCHHHHHHHHHCTTEEEEEEECC-------------------CCHHHHHHHHHHHHHT
T ss_pred             HHHHHHhhhcCCCCEEEEecCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhCCceEEEEcchHhhhhhhhhc
Confidence            344444443 56789999999999999999999776799999999999999988755321            2333    


Q ss_pred             -CCceEEEeCccc------cCCCCH--------------------HHHHHHHHHcccCCcEEEEEEeccCCCCCchHHHH
Q 019861          230 -DSIDAVHAGAAI------HCWSSP--------------------STGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSR  282 (334)
Q Consensus       230 -~~fD~V~~~~vl------~h~~d~--------------------~~~L~~i~r~LkpgG~lii~~~~~~~~~~~~~~~~  282 (334)
                       ++||+|+++..+      +|+...                    ..+++++.++|+|||++++.....           
T Consensus        99 ~~~fD~i~~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~-----------  167 (215)
T 4dzr_A           99 GRPWHAIVSNPPYIPTGEIDQLEPSVRDYEPRLALDGGEDGLQFYRRMAALPPYVLARGRAGVFLEVGH-----------  167 (215)
T ss_dssp             TCCBSEEEECCCCCC------------------------CTTHHHHHHHTCCGGGBCSSSEEEEEECTT-----------
T ss_pred             cCcccEEEECCCCCCCccccccChhhhccCccccccCCCcHHHHHHHHHHHHHHHhcCCCeEEEEEECC-----------
Confidence             899999996433      332211                    678899999999999944433321           


Q ss_pred             HHHHHhhhhcCccCCCCHHHHHHHHH--hCCCcEEEEe--ecCcEEEEEEEcC
Q 019861          283 LLRQNMMQISGSYTFLSEREIEDLCR--ACGLVDFKCT--RNRGFVMFTATKP  331 (334)
Q Consensus       283 ~~~~~~~~~~~~~~~~t~~~l~~ll~--~~Gf~~v~~~--~~g~~~~~~a~K~  331 (334)
                                     ...+.+.++++  +.||..++..  ..|...++.++|.
T Consensus       168 ---------------~~~~~~~~~l~~~~~gf~~~~~~~~~~~~~r~~~~~~~  205 (215)
T 4dzr_A          168 ---------------NQADEVARLFAPWRERGFRVRKVKDLRGIDRVIAVTRE  205 (215)
T ss_dssp             ---------------SCHHHHHHHTGGGGGGTEECCEEECTTSCEEEEEEEEC
T ss_pred             ---------------ccHHHHHHHHHHhhcCCceEEEEEecCCCEEEEEEEEc
Confidence                           24667888999  9999776643  3344455555543

>3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A*

Probab=99.49  E-value=1.4e-14  Score=126.04  Aligned_cols=138  Identities=11%  Similarity=0.093  Sum_probs=83.8

Q ss_pred             CCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCC-HHHHHHH---HHHHhcCC------------CCCCCCceEEEeCcc
Q 019861          177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYS-ENMLKQC---YEFVQQES------------NFPKDSIDAVHAGAA  240 (334)
Q Consensus       177 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s-~~~~~~a---~~~~~~~~------------~~~~~~fD~V~~~~v  240 (334)
                      ++.+|||||||+|.++..+++..+...|+|+|+| +.|++.|   +++.....            .+++..+|.|.+..+
T Consensus        24 ~~~~vLDiGCG~G~~~~~la~~~~~~~v~GvD~s~~~ml~~A~~A~~~~~~~~~~~v~~~~~d~~~l~~~~~d~v~~i~~  103 (225)
T 3p2e_A           24 FDRVHIDLGTGDGRNIYKLAINDQNTFYIGIDPVKENLFDISKKIIKKPSKGGLSNVVFVIAAAESLPFELKNIADSISI  103 (225)
T ss_dssp             CSEEEEEETCTTSHHHHHHHHTCTTEEEEEECSCCGGGHHHHHHHTSCGGGTCCSSEEEECCBTTBCCGGGTTCEEEEEE
T ss_pred             CCCEEEEEeccCcHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHHHHHcCCCCeEEEEcCHHHhhhhccCeEEEEEE
Confidence            4779999999999999999977667799999999 7777776   54433211            233222344444333


Q ss_pred             ccCC--------CCHHHHHHHHHHcccCCcEEEEEEeccCCCCCchHHHHHHHHHhhhhcCccCCCCHHHHHHHHHhCCC
Q 019861          241 IHCW--------SSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLCRACGL  312 (334)
Q Consensus       241 l~h~--------~d~~~~L~~i~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~l~~ll~~~Gf  312 (334)
                      ...+        .++..+|++++++|||||.+++.....+.. ...+....   ....  ....++..+++.++++++||
T Consensus       104 ~~~~~~~~~~~~~~~~~~l~~~~r~LkpGG~l~i~~~~~~~~-~~~~~~~~---~~~~--~~~~~~~~~el~~~l~~aGf  177 (225)
T 3p2e_A          104 LFPWGTLLEYVIKPNRDILSNVADLAKKEAHFEFVTTYSDSY-EEAEIKKR---GLPL--LSKAYFLSEQYKAELSNSGF  177 (225)
T ss_dssp             ESCCHHHHHHHHTTCHHHHHHHHTTEEEEEEEEEEECCCC--------------------CCHHHHHSHHHHHHHHHHTC
T ss_pred             eCCCcHHhhhhhcchHHHHHHHHHhcCCCcEEEEEEeccccc-hhchhhhc---CCCC--CChhhcchHHHHHHHHHcCC
Confidence            2211        234578999999999999999955433321 11110000   0000  01111222359999999999


Q ss_pred             cEEEEeec
Q 019861          313 VDFKCTRN  320 (334)
Q Consensus       313 ~~v~~~~~  320 (334)
                      ++.+....
T Consensus       178 ~v~~~~~~  185 (225)
T 3p2e_A          178 RIDDVKEL  185 (225)
T ss_dssp             EEEEEEEE
T ss_pred             Ceeeeeec
Confidence            98876543

>3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis}

Probab=99.49  E-value=1.8e-13  Score=115.41  Aligned_cols=96  Identities=16%  Similarity=0.099  Sum_probs=80.2

Q ss_pred             CCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCC----------------CCCCCCceEEEeCc
Q 019861          176 VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES----------------NFPKDSIDAVHAGA  239 (334)
Q Consensus       176 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~----------------~~~~~~fD~V~~~~  239 (334)
                      .++.+|||+|||+|.++..++..+ ..+|+|+|+++.+++.++++.....                .+++++||+|++..
T Consensus        43 ~~~~~vLDlgcG~G~~~~~~~~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~i~~~~  121 (189)
T 3p9n_A           43 LTGLAVLDLYAGSGALGLEALSRG-AASVLFVESDQRSAAVIARNIEALGLSGATLRRGAVAAVVAAGTTSPVDLVLADP  121 (189)
T ss_dssp             CTTCEEEEETCTTCHHHHHHHHTT-CSEEEEEECCHHHHHHHHHHHHHHTCSCEEEEESCHHHHHHHCCSSCCSEEEECC
T ss_pred             CCCCEEEEeCCCcCHHHHHHHHCC-CCeEEEEECCHHHHHHHHHHHHHcCCCceEEEEccHHHHHhhccCCCccEEEECC
Confidence            457899999999999999887765 3589999999999999998764321                13468999999998


Q ss_pred             cccCC-CCHHHHHHHHHH--cccCCcEEEEEEeccC
Q 019861          240 AIHCW-SSPSTGVAEISR--VLRPGGVFVGTTYIVD  272 (334)
Q Consensus       240 vl~h~-~d~~~~L~~i~r--~LkpgG~lii~~~~~~  272 (334)
                      .+++. .+...+++++.+  +|+|||++++..+...
T Consensus       122 p~~~~~~~~~~~l~~~~~~~~L~pgG~l~~~~~~~~  157 (189)
T 3p9n_A          122 PYNVDSADVDAILAALGTNGWTREGTVAVVERATTC  157 (189)
T ss_dssp             CTTSCHHHHHHHHHHHHHSSSCCTTCEEEEEEETTS
T ss_pred             CCCcchhhHHHHHHHHHhcCccCCCeEEEEEecCCC
Confidence            87775 577889999999  9999999999888754

>1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53

Probab=99.48  E-value=2.9e-13  Score=116.42  Aligned_cols=94  Identities=17%  Similarity=0.111  Sum_probs=76.3

Q ss_pred             CCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCC--------------C--CCCCCceEEEeCcc
Q 019861          177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES--------------N--FPKDSIDAVHAGAA  240 (334)
Q Consensus       177 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~--------------~--~~~~~fD~V~~~~v  240 (334)
                      ++.+|||||||+|.++..++...+..+++|+|+++.+++.|+++.....              +  +++++||+|++...
T Consensus        41 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~D~i~~~~~  120 (214)
T 1yzh_A           41 DNPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDGSDLTDYFEDGEIDRLYLNFS  120 (214)
T ss_dssp             CCCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCSSEEEEECCSSCGGGTSCTTCCSEEEEESC
T ss_pred             CCCeEEEEccCcCHHHHHHHHHCCCCCEEEEEcCHHHHHHHHHHHHHcCCCCEEEEeCCHHHHHhhcCCCCCCEEEEECC
Confidence            4679999999999999999999877799999999999999998764211              1  55778999999865


Q ss_pred             ccCCC--------CHHHHHHHHHHcccCCcEEEEEEec
Q 019861          241 IHCWS--------SPSTGVAEISRVLRPGGVFVGTTYI  270 (334)
Q Consensus       241 l~h~~--------d~~~~L~~i~r~LkpgG~lii~~~~  270 (334)
                      ..+..        ....+++++.++|+|||.+++.+..
T Consensus       121 ~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  158 (214)
T 1yzh_A          121 DPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKTDN  158 (214)
T ss_dssp             CCCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEESC
T ss_pred             CCccccchhhhccCCHHHHHHHHHHcCCCcEEEEEeCC
Confidence            43322        1257999999999999999997653

>3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp}

Probab=99.47  E-value=1e-13  Score=120.96  Aligned_cols=130  Identities=15%  Similarity=0.170  Sum_probs=89.5

Q ss_pred             CCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcC-------------CCCCCCCceEEEeCcccc
Q 019861          176 VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQE-------------SNFPKDSIDAVHAGAAIH  242 (334)
Q Consensus       176 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~-------------~~~~~~~fD~V~~~~vl~  242 (334)
                      .++.+|||||||+|.++..+++.+. .+|+|+|+|+.|++.++++....             ..++...+|.+.+..++.
T Consensus        36 ~~g~~VLDiGcGtG~~t~~la~~g~-~~V~gvDis~~ml~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~D~v~~  114 (232)
T 3opn_A           36 INGKTCLDIGSSTGGFTDVMLQNGA-KLVYALDVGTNQLAWKIRSDERVVVMEQFNFRNAVLADFEQGRPSFTSIDVSFI  114 (232)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHTTC-SEEEEECSSCCCCCHHHHTCTTEEEECSCCGGGCCGGGCCSCCCSEEEECCSSS
T ss_pred             CCCCEEEEEccCCCHHHHHHHhcCC-CEEEEEcCCHHHHHHHHHhCccccccccceEEEeCHhHcCcCCCCEEEEEEEhh
Confidence            3567999999999999999999863 49999999999999887643210             112222467777766665


Q ss_pred             CCCCHHHHHHHHHHcccCCcEEEEEEeccCCCCCchHHHHHHHHHhhh--h--cCccCCCCHHHHHHHHHhCCCcEEEEe
Q 019861          243 CWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQ--I--SGSYTFLSEREIEDLCRACGLVDFKCT  318 (334)
Q Consensus       243 h~~d~~~~L~~i~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~--~--~~~~~~~t~~~l~~ll~~~Gf~~v~~~  318 (334)
                      ++   ..+|++++++|||||.+++...         +.....+.....  .  ..+.+..+.+++.++++++||+++...
T Consensus       115 ~l---~~~l~~i~rvLkpgG~lv~~~~---------p~~e~~~~~~~~~G~~~d~~~~~~~~~~l~~~l~~aGf~v~~~~  182 (232)
T 3opn_A          115 SL---DLILPPLYEILEKNGEVAALIK---------PQFEAGREQVGKNGIIRDPKVHQMTIEKVLKTATQLGFSVKGLT  182 (232)
T ss_dssp             CG---GGTHHHHHHHSCTTCEEEEEEC---------HHHHSCHHHHC-CCCCCCHHHHHHHHHHHHHHHHHHTEEEEEEE
T ss_pred             hH---HHHHHHHHHhccCCCEEEEEEC---------cccccCHHHhCcCCeecCcchhHHHHHHHHHHHHHCCCEEEEEE
Confidence            54   6789999999999999998541         111111111100  0  012233478899999999999988754

>3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae}

Probab=99.47  E-value=5.4e-13  Score=119.84  Aligned_cols=132  Identities=17%  Similarity=0.132  Sum_probs=96.5

Q ss_pred             HHHHHHcccCCCCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeC-CHHHHHHHHHHH-----hcC--------C-----
Q 019861          165 EFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDY-SENMLKQCYEFV-----QQE--------S-----  225 (334)
Q Consensus       165 ~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~-s~~~~~~a~~~~-----~~~--------~-----  225 (334)
                      +.+.+.......++.+|||+|||+|.++..++..+ ..+|+|+|+ ++.+++.++++.     ...        .     
T Consensus        67 l~~~l~~~~~~~~~~~vLDlG~G~G~~~~~~a~~~-~~~v~~~D~s~~~~~~~a~~n~~~N~~~~~~~~~~~~~~v~~~~  145 (281)
T 3bzb_A           67 LADTLCWQPELIAGKTVCELGAGAGLVSIVAFLAG-ADQVVATDYPDPEILNSLESNIREHTANSCSSETVKRASPKVVP  145 (281)
T ss_dssp             HHHHHHHCGGGTTTCEEEETTCTTSHHHHHHHHTT-CSEEEEEECSCHHHHHHHHHHHHTTCC----------CCCEEEE
T ss_pred             HHHHHHhcchhcCCCeEEEecccccHHHHHHHHcC-CCEEEEEeCCCHHHHHHHHHHHHHhhhhhcccccCCCCCeEEEE
Confidence            34555555544567899999999999999998876 358999999 899999999887     211        0     


Q ss_pred             ----C----C----CCCCceEEEeCccccCCCCHHHHHHHHHHccc---C--CcEEEEEEeccCCCCCchHHHHHHHHHh
Q 019861          226 ----N----F----PKDSIDAVHAGAAIHCWSSPSTGVAEISRVLR---P--GGVFVGTTYIVDGPFNLIPFSRLLRQNM  288 (334)
Q Consensus       226 ----~----~----~~~~fD~V~~~~vl~h~~d~~~~L~~i~r~Lk---p--gG~lii~~~~~~~~~~~~~~~~~~~~~~  288 (334)
                          .    +    ++++||+|++..+++|.++...+++.+.++|+   |  ||++++......      +..       
T Consensus       146 ~~~~~~~~~~~~~~~~~~fD~Ii~~dvl~~~~~~~~ll~~l~~~Lk~~~p~~gG~l~v~~~~~~------~~~-------  212 (281)
T 3bzb_A          146 YRWGDSPDSLQRCTGLQRFQVVLLADLLSFHQAHDALLRSVKMLLALPANDPTAVALVTFTHHR------PHL-------  212 (281)
T ss_dssp             CCTTSCTHHHHHHHSCSSBSEEEEESCCSCGGGHHHHHHHHHHHBCCTTTCTTCEEEEEECC------------------
T ss_pred             ecCCCccHHHHhhccCCCCCEEEEeCcccChHHHHHHHHHHHHHhcccCCCCCCEEEEEEEeee------ccc-------
Confidence                0    1    25789999999999999999999999999999   9  998877433211      000       


Q ss_pred             hhhcCccCCCCHHHHHHHHHhCC-CcEEEEe
Q 019861          289 MQISGSYTFLSEREIEDLCRACG-LVDFKCT  318 (334)
Q Consensus       289 ~~~~~~~~~~t~~~l~~ll~~~G-f~~v~~~  318 (334)
                              ......+.+.+++.| |++....
T Consensus       213 --------~~~~~~~~~~l~~~G~f~v~~~~  235 (281)
T 3bzb_A          213 --------AERDLAFFRLVNADGALIAEPWL  235 (281)
T ss_dssp             -----------CTHHHHHHHHSTTEEEEEEE
T ss_pred             --------chhHHHHHHHHHhcCCEEEEEec
Confidence                    011246667888899 8877653

>1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13

Probab=99.47  E-value=5.1e-13  Score=119.64  Aligned_cols=122  Identities=20%  Similarity=0.260  Sum_probs=96.8

Q ss_pred             HHHHHHHcccCCCCCCcEEEECCCcCHHHHHHHHc-CCCCeEEEEeCCHHHHHHHHHHHhcCC--------------CCC
Q 019861          164 KEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQQES--------------NFP  228 (334)
Q Consensus       164 ~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~~v~giD~s~~~~~~a~~~~~~~~--------------~~~  228 (334)
                      .....+...+...++.+|||+|||+|.++..++.. ++..+++++|+++.+++.+++++....              .++
T Consensus        99 ~~~~~i~~~~~~~~~~~VLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~  178 (277)
T 1o54_A           99 KDSSFIAMMLDVKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISEGFD  178 (277)
T ss_dssp             HHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGGCCS
T ss_pred             HHHHHHHHHhCCCCCCEEEEECCcCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHccc
Confidence            33456666677777889999999999999999988 666799999999999999998764321              245


Q ss_pred             CCCceEEEeCccccCCCCHHHHHHHHHHcccCCcEEEEEEeccCCCCCchHHHHHHHHHhhhhcCccCCCCHHHHHHHHH
Q 019861          229 KDSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLCR  308 (334)
Q Consensus       229 ~~~fD~V~~~~vl~h~~d~~~~L~~i~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~l~~ll~  308 (334)
                      +++||+|++     +.+++..+++++.++|+|||++++.++...                          ...++.+.++
T Consensus       179 ~~~~D~V~~-----~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~--------------------------~~~~~~~~l~  227 (277)
T 1o54_A          179 EKDVDALFL-----DVPDPWNYIDKCWEALKGGGRFATVCPTTN--------------------------QVQETLKKLQ  227 (277)
T ss_dssp             CCSEEEEEE-----CCSCGGGTHHHHHHHEEEEEEEEEEESSHH--------------------------HHHHHHHHHH
T ss_pred             CCccCEEEE-----CCcCHHHHHHHHHHHcCCCCEEEEEeCCHH--------------------------HHHHHHHHHH
Confidence            678999998     457888999999999999999999886421                          1245667777


Q ss_pred             hCCCcEEE
Q 019861          309 ACGLVDFK  316 (334)
Q Consensus       309 ~~Gf~~v~  316 (334)
                      +.||..++
T Consensus       228 ~~gf~~~~  235 (277)
T 1o54_A          228 ELPFIRIE  235 (277)
T ss_dssp             HSSEEEEE
T ss_pred             HCCCceeE
Confidence            88887665

>2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens}

Probab=99.46  E-value=4.9e-13  Score=116.59  Aligned_cols=140  Identities=13%  Similarity=0.085  Sum_probs=93.6

Q ss_pred             ccCCCCCCcEEEECCCcCHHHHHHHHc-CCCCeEEEEeCCHHHHHHHHHHHhcCC---------------CCCCCCceEE
Q 019861          172 YLKPVLGGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQQES---------------NFPKDSIDAV  235 (334)
Q Consensus       172 ~l~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~~v~giD~s~~~~~~a~~~~~~~~---------------~~~~~~fD~V  235 (334)
                      .+...++.+|||+|||+|.++..+++. ++..+++|+|+++.+++.+.+......               ++.+++||+|
T Consensus        72 ~~~~~~~~~vLDlG~G~G~~~~~la~~~g~~~~v~gvD~s~~~i~~~~~~a~~~~~v~~~~~d~~~~~~~~~~~~~~D~V  151 (233)
T 2ipx_A           72 QIHIKPGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRDLINLAKKRTNIIPVIEDARHPHKYRMLIAMVDVI  151 (233)
T ss_dssp             CCCCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHCTTEEEECSCTTCGGGGGGGCCCEEEE
T ss_pred             eecCCCCCEEEEEcccCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHhhccCCeEEEEcccCChhhhcccCCcEEEE
Confidence            444556889999999999999999987 355699999999887666655433211               1235789999


Q ss_pred             EeCccccCCCCH-HHHHHHHHHcccCCcEEEEEEeccCCCCCchHHHHHHHHHhhhhcCccCCCCHHHHHHHHHhCCCcE
Q 019861          236 HAGAAIHCWSSP-STGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLCRACGLVD  314 (334)
Q Consensus       236 ~~~~vl~h~~d~-~~~L~~i~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~l~~ll~~~Gf~~  314 (334)
                      ++...   .++. ..++.++.++|+|||++++........... +.              ...+. ++ .++|+++||++
T Consensus       152 ~~~~~---~~~~~~~~~~~~~~~LkpgG~l~i~~~~~~~~~~~-~~--------------~~~~~-~~-~~~l~~~Gf~~  211 (233)
T 2ipx_A          152 FADVA---QPDQTRIVALNAHTFLRNGGHFVISIKANCIDSTA-SA--------------EAVFA-SE-VKKMQQENMKP  211 (233)
T ss_dssp             EECCC---CTTHHHHHHHHHHHHEEEEEEEEEEEEHHHHCSSS-CH--------------HHHHH-HH-HHTTGGGTEEE
T ss_pred             EEcCC---CccHHHHHHHHHHHHcCCCeEEEEEEcccccccCC-CH--------------HHHHH-HH-HHHHHHCCCce
Confidence            99554   2233 456889999999999999965542100000 00              00111 23 48889999999


Q ss_pred             EEEeecC----cEEEEEEEcC
Q 019861          315 FKCTRNR----GFVMFTATKP  331 (334)
Q Consensus       315 v~~~~~g----~~~~~~a~K~  331 (334)
                      ++.....    .+.+++++++
T Consensus       212 ~~~~~~~~~~~~~~~v~~~~~  232 (233)
T 2ipx_A          212 QEQLTLEPYERDHAVVVGVYR  232 (233)
T ss_dssp             EEEEECTTTSSSEEEEEEEEC
T ss_pred             EEEEecCCccCCcEEEEEEeC
Confidence            8855432    3677777664

>3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli}

Probab=99.46  E-value=3.5e-13  Score=115.37  Aligned_cols=97  Identities=18%  Similarity=0.157  Sum_probs=81.6

Q ss_pred             HHHHHcccCCCCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCC--------------CCCCCC
Q 019861          166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES--------------NFPKDS  231 (334)
Q Consensus       166 ~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~--------------~~~~~~  231 (334)
                      ...+.+.+...++.+|||||||+|.++..+++.+.  +++|+|+++.+++.+++++....              ..++++
T Consensus        66 ~~~~~~~l~~~~~~~vLdiG~G~G~~~~~la~~~~--~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~  143 (210)
T 3lbf_A           66 VARMTELLELTPQSRVLEIGTGSGYQTAILAHLVQ--HVCSVERIKGLQWQARRRLKNLDLHNVSTRHGDGWQGWQARAP  143 (210)
T ss_dssp             HHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHSS--EEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGCC
T ss_pred             HHHHHHhcCCCCCCEEEEEcCCCCHHHHHHHHhCC--EEEEEecCHHHHHHHHHHHHHcCCCceEEEECCcccCCccCCC
Confidence            44556666667789999999999999999999854  99999999999999998865321              123578


Q ss_pred             ceEEEeCccccCCCCHHHHHHHHHHcccCCcEEEEEEec
Q 019861          232 IDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYI  270 (334)
Q Consensus       232 fD~V~~~~vl~h~~d~~~~L~~i~r~LkpgG~lii~~~~  270 (334)
                      ||+|++..+++|+++      ++.++|+|||++++..+.
T Consensus       144 ~D~i~~~~~~~~~~~------~~~~~L~pgG~lv~~~~~  176 (210)
T 3lbf_A          144 FDAIIVTAAPPEIPT------ALMTQLDEGGILVLPVGE  176 (210)
T ss_dssp             EEEEEESSBCSSCCT------HHHHTEEEEEEEEEEECS
T ss_pred             ccEEEEccchhhhhH------HHHHhcccCcEEEEEEcC
Confidence            999999999999986      588999999999998876

>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405}

Probab=99.45  E-value=4.1e-13  Score=113.76  Aligned_cols=96  Identities=17%  Similarity=0.257  Sum_probs=76.1

Q ss_pred             CCCCcEEEECCCcCHHHHHHHHc-CCCCeEEEEeCCHHHHHHHHHHHhcCC----------------CCCCCCceEEEeC
Q 019861          176 VLGGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQQES----------------NFPKDSIDAVHAG  238 (334)
Q Consensus       176 ~~~~~vLDiGcG~G~~~~~l~~~-~~~~~v~giD~s~~~~~~a~~~~~~~~----------------~~~~~~fD~V~~~  238 (334)
                      .++.+|||+|||+|.++..+++. ++..+++|+|+++.+++.+++++....                .+.+++||+|++.
T Consensus        21 ~~~~~vLDlGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~~  100 (197)
T 3eey_A           21 KEGDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLNLIDRVTLIKDGHQNMDKYIDCPVKAVMFN  100 (197)
T ss_dssp             CTTCEEEESCCTTSHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHHHHTTCGGGEEEECSCGGGGGGTCCSCEEEEEEE
T ss_pred             CCCCEEEEcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHhhhccCCceEEEEc
Confidence            34789999999999999999887 345699999999999999998865421                1445789999987


Q ss_pred             ccc---------cCCCCHHHHHHHHHHcccCCcEEEEEEecc
Q 019861          239 AAI---------HCWSSPSTGVAEISRVLRPGGVFVGTTYIV  271 (334)
Q Consensus       239 ~vl---------~h~~d~~~~L~~i~r~LkpgG~lii~~~~~  271 (334)
                      ..+         .+..++..+++++.++|+|||++++..+..
T Consensus       101 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~  142 (197)
T 3eey_A          101 LGYLPSGDHSISTRPETTIQALSKAMELLVTGGIITVVIYYG  142 (197)
T ss_dssp             ESBCTTSCTTCBCCHHHHHHHHHHHHHHEEEEEEEEEEECCB
T ss_pred             CCcccCcccccccCcccHHHHHHHHHHhCcCCCEEEEEEccC
Confidence            654         111134579999999999999999987654

>3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes}

Probab=99.45  E-value=1.5e-12  Score=115.39  Aligned_cols=136  Identities=17%  Similarity=0.194  Sum_probs=98.9

Q ss_pred             HHHcccCCC-CCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCC-----------------CCCC
Q 019861          168 LMKGYLKPV-LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES-----------------NFPK  229 (334)
Q Consensus       168 ~l~~~l~~~-~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~-----------------~~~~  229 (334)
                      .+..++... ++.+|||+|||+|.++..++..++ .+++|+|+++.+++.|++++....                 .+++
T Consensus        39 ll~~~~~~~~~~~~vLDlG~G~G~~~~~la~~~~-~~v~gvDi~~~~~~~a~~n~~~~~~~~~v~~~~~D~~~~~~~~~~  117 (259)
T 3lpm_A           39 LLAKFSYLPIRKGKIIDLCSGNGIIPLLLSTRTK-AKIVGVEIQERLADMAKRSVAYNQLEDQIEIIEYDLKKITDLIPK  117 (259)
T ss_dssp             HHHHHCCCCSSCCEEEETTCTTTHHHHHHHTTCC-CEEEEECCSHHHHHHHHHHHHHTTCTTTEEEECSCGGGGGGTSCT
T ss_pred             HHHHHhcCCCCCCEEEEcCCchhHHHHHHHHhcC-CcEEEEECCHHHHHHHHHHHHHCCCcccEEEEECcHHHhhhhhcc
Confidence            344455555 688999999999999999999875 499999999999999998865321                 1447


Q ss_pred             CCceEEEeCccccC-----CC---------------CHHHHHHHHHHcccCCcEEEEEEeccCCCCCchHHHHHHHHHhh
Q 019861          230 DSIDAVHAGAAIHC-----WS---------------SPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMM  289 (334)
Q Consensus       230 ~~fD~V~~~~vl~h-----~~---------------d~~~~L~~i~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~  289 (334)
                      ++||+|+++-.+.+     ..               +...+++.+.++|+|||++++..+.                   
T Consensus       118 ~~fD~Ii~npPy~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~-------------------  178 (259)
T 3lpm_A          118 ERADIVTCNPPYFATPDTSLKNTNEHFRIARHEVMCTLEDTIRVAASLLKQGGKANFVHRP-------------------  178 (259)
T ss_dssp             TCEEEEEECCCC-----------------------HHHHHHHHHHHHHEEEEEEEEEEECT-------------------
T ss_pred             CCccEEEECCCCCCCccccCCCCchHHHhhhccccCCHHHHHHHHHHHccCCcEEEEEEcH-------------------
Confidence            89999999643322     21               2357899999999999999995432                   


Q ss_pred             hhcCccCCCCHHHHHHHHHhCCCcEEEEeec-------CcEEEEEEEcC
Q 019861          290 QISGSYTFLSEREIEDLCRACGLVDFKCTRN-------RGFVMFTATKP  331 (334)
Q Consensus       290 ~~~~~~~~~t~~~l~~ll~~~Gf~~v~~~~~-------g~~~~~~a~K~  331 (334)
                              ....++.+++++.||........       ....++.++|.
T Consensus       179 --------~~~~~~~~~l~~~~~~~~~~~~v~~~~~~~~~~~l~~~~k~  219 (259)
T 3lpm_A          179 --------ERLLDIIDIMRKYRLEPKRIQFVHPRSDREANTVLVEGIKD  219 (259)
T ss_dssp             --------TTHHHHHHHHHHTTEEEEEEEEEESSTTSCCSEEEEEEEET
T ss_pred             --------HHHHHHHHHHHHCCCceEEEEEeecCCCCCcEEEEEEEEeC
Confidence                    14567888899999987663321       23556666664

>2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53

Probab=99.45  E-value=6.1e-13  Score=114.57  Aligned_cols=94  Identities=15%  Similarity=0.066  Sum_probs=75.6

Q ss_pred             CCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCC----------------CCCCCCceEEEeCcc
Q 019861          177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES----------------NFPKDSIDAVHAGAA  240 (334)
Q Consensus       177 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~----------------~~~~~~fD~V~~~~v  240 (334)
                      ++.+|||||||+|.++..+++..+..+++|+|+++.+++.|+++.....                .+++++||.|++...
T Consensus        38 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~giD~s~~~l~~a~~~~~~~~~~nv~~~~~d~~~l~~~~~~~~~d~v~~~~~  117 (213)
T 2fca_A           38 DNPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDADTLTDVFEPGEVKRVYLNFS  117 (213)
T ss_dssp             CCCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSCCSSEEEECCCGGGHHHHCCTTSCCEEEEESC
T ss_pred             CCceEEEEecCCCHHHHHHHHHCCCCCEEEEEechHHHHHHHHHHHHcCCCCEEEEeCCHHHHHhhcCcCCcCEEEEECC
Confidence            4679999999999999999998777899999999999999998765321                156788999987654


Q ss_pred             ccCCCC--------HHHHHHHHHHcccCCcEEEEEEec
Q 019861          241 IHCWSS--------PSTGVAEISRVLRPGGVFVGTTYI  270 (334)
Q Consensus       241 l~h~~d--------~~~~L~~i~r~LkpgG~lii~~~~  270 (334)
                      ..+...        ...+|+++.++|+|||.+++.+.+
T Consensus       118 ~p~~~~~~~~~rl~~~~~l~~~~~~LkpgG~l~~~td~  155 (213)
T 2fca_A          118 DPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKTDN  155 (213)
T ss_dssp             CCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEESC
T ss_pred             CCCcCccccccccCcHHHHHHHHHHcCCCCEEEEEeCC
Confidence            322211        257899999999999999998754

>3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus}

Probab=99.45  E-value=1.1e-13  Score=123.96  Aligned_cols=133  Identities=14%  Similarity=0.125  Sum_probs=90.5

Q ss_pred             CCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhc-----CC--------CCCCCCceEEEeCcccc
Q 019861          176 VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQ-----ES--------NFPKDSIDAVHAGAAIH  242 (334)
Q Consensus       176 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~-----~~--------~~~~~~fD~V~~~~vl~  242 (334)
                      .++.+|||||||+|.++..+++.+ ..+|+|+|+++.|++.+.+....     ..        .++..+||+|++..+++
T Consensus        84 ~~g~~vLDiGcGTG~~t~~L~~~g-a~~V~aVDvs~~mL~~a~r~~~rv~~~~~~ni~~l~~~~l~~~~fD~v~~d~sf~  162 (291)
T 3hp7_A           84 VEDMITIDIGASTGGFTDVMLQNG-AKLVYAVDVGTNQLVWKLRQDDRVRSMEQYNFRYAEPVDFTEGLPSFASIDVSFI  162 (291)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHTT-CSEEEEECSSSSCSCHHHHTCTTEEEECSCCGGGCCGGGCTTCCCSEEEECCSSS
T ss_pred             ccccEEEecCCCccHHHHHHHhCC-CCEEEEEECCHHHHHHHHHhCcccceecccCceecchhhCCCCCCCEEEEEeeHh
Confidence            357799999999999999998885 35999999999999885442110     00        13445699999988877


Q ss_pred             CCCCHHHHHHHHHHcccCCcEEEEEEe-ccCCCCCchHHHHHHHHHhhhhcCccCCCCHHHHHHHHHhCCCcEEEEe
Q 019861          243 CWSSPSTGVAEISRVLRPGGVFVGTTY-IVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLCRACGLVDFKCT  318 (334)
Q Consensus       243 h~~d~~~~L~~i~r~LkpgG~lii~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~l~~ll~~~Gf~~v~~~  318 (334)
                      ++   ..+|.+++++|+|||.+++..- ..+..   ......  ..... ....+....+++.++++++||.+....
T Consensus       163 sl---~~vL~e~~rvLkpGG~lv~lvkPqfe~~---~~~~~~--~G~vr-d~~~~~~~~~~v~~~~~~~Gf~v~~~~  230 (291)
T 3hp7_A          163 SL---NLILPALAKILVDGGQVVALVKPQFEAG---REQIGK--NGIVR-ESSIHEKVLETVTAFAVDYGFSVKGLD  230 (291)
T ss_dssp             CG---GGTHHHHHHHSCTTCEEEEEECGGGTSC---GGGCC---CCCCC-CHHHHHHHHHHHHHHHHHTTEEEEEEE
T ss_pred             hH---HHHHHHHHHHcCcCCEEEEEECcccccC---hhhcCC--CCccC-CHHHHHHHHHHHHHHHHHCCCEEEEEE
Confidence            54   6789999999999999988632 11110   000000  00000 001233467899999999999987754

>3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E*

Probab=99.44  E-value=2.5e-12  Score=111.86  Aligned_cols=138  Identities=7%  Similarity=0.015  Sum_probs=91.3

Q ss_pred             CCCCCCcEEEECCCcCHHHHHHHHc-CCCCeEEEEeCCHHHHHHHHHHHhcCC---------------CCCCCCceEEEe
Q 019861          174 KPVLGGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQQES---------------NFPKDSIDAVHA  237 (334)
Q Consensus       174 ~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~~v~giD~s~~~~~~a~~~~~~~~---------------~~~~~~fD~V~~  237 (334)
                      ...++.+|||+|||+|.++..+++. ++.+.|+|+|+++.+++...+......               ....++||+|++
T Consensus        73 ~l~~g~~VLDlG~GtG~~t~~la~~v~~~G~V~avD~s~~~l~~l~~~a~~r~nv~~i~~Da~~~~~~~~~~~~~D~I~~  152 (232)
T 3id6_C           73 PIRKGTKVLYLGAASGTTISHVSDIIELNGKAYGVEFSPRVVRELLLVAQRRPNIFPLLADARFPQSYKSVVENVDVLYV  152 (232)
T ss_dssp             SCCTTCEEEEETCTTSHHHHHHHHHHTTTSEEEEEECCHHHHHHHHHHHHHCTTEEEEECCTTCGGGTTTTCCCEEEEEE
T ss_pred             CCCCCCEEEEEeecCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhcCCeEEEEcccccchhhhccccceEEEEe
Confidence            4677899999999999999999876 556799999999988654432221100               011468999999


Q ss_pred             CccccCCCCHHHHH-HHHHHcccCCcEEEEEEeccCCCCCchHHHHHHHHHhhhhcCccCCCCHHHHHHHHHhCCCcEEE
Q 019861          238 GAAIHCWSSPSTGV-AEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLCRACGLVDFK  316 (334)
Q Consensus       238 ~~vl~h~~d~~~~L-~~i~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~l~~ll~~~Gf~~v~  316 (334)
                      ....   ++....+ ..+.+.|||||+++++.......           ..  . ....   ..++..+.|+++||++++
T Consensus       153 d~a~---~~~~~il~~~~~~~LkpGG~lvisik~~~~d-----------~t--~-~~~e---~~~~~~~~L~~~gf~~~~  212 (232)
T 3id6_C          153 DIAQ---PDQTDIAIYNAKFFLKVNGDMLLVIKARSID-----------VT--K-DPKE---IYKTEVEKLENSNFETIQ  212 (232)
T ss_dssp             CCCC---TTHHHHHHHHHHHHEEEEEEEEEEEC--------------------C-CSSS---STTHHHHHHHHTTEEEEE
T ss_pred             cCCC---hhHHHHHHHHHHHhCCCCeEEEEEEccCCcc-----------cC--C-CHHH---HHHHHHHHHHHCCCEEEE
Confidence            8653   5555544 55666999999999985432100           00  0 0011   113456778899999999


Q ss_pred             EeecC----cEEEEEEEcC
Q 019861          317 CTRNR----GFVMFTATKP  331 (334)
Q Consensus       317 ~~~~g----~~~~~~a~K~  331 (334)
                      .....    .+++++++|.
T Consensus       213 ~~~l~p~~~~h~~v~~~~~  231 (232)
T 3id6_C          213 IINLDPYDKDHAIVLSKYK  231 (232)
T ss_dssp             EEECTTTCSSCEEEEEEEC
T ss_pred             EeccCCCcCceEEEEEEeC
Confidence            77653    4677777764

>3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A*

Probab=99.44  E-value=7.8e-13  Score=120.13  Aligned_cols=132  Identities=13%  Similarity=0.170  Sum_probs=96.2

Q ss_pred             CCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhc------CC--------------CCCCCCceEEE
Q 019861          177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQ------ES--------------NFPKDSIDAVH  236 (334)
Q Consensus       177 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~------~~--------------~~~~~~fD~V~  236 (334)
                      ++.+|||||||+|.++..+++..+..+++++|+++.+++.+++++..      ..              ..++++||+|+
T Consensus        95 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~fDvIi  174 (304)
T 3bwc_A           95 KPERVLIIGGGDGGVLREVLRHGTVEHCDLVDIDGEVMEQSKQHFPQISRSLADPRATVRVGDGLAFVRQTPDNTYDVVI  174 (304)
T ss_dssp             SCCEEEEEECTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHSSCTTCEEEEE
T ss_pred             CCCeEEEEcCCCCHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHHhccCCceeEEE
Confidence            46799999999999999999875556999999999999999987621      11              11467899999


Q ss_pred             eCccccCCCCH----HHHHHHHHHcccCCcEEEEEEeccCCCCCchHHHHHHHHHhhhhcCccCCCCHHHHHHHHHhCCC
Q 019861          237 AGAAIHCWSSP----STGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLCRACGL  312 (334)
Q Consensus       237 ~~~vl~h~~d~----~~~L~~i~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~l~~ll~~~Gf  312 (334)
                      +.....+.+..    ..++++++++|+|||++++...+...                      .....+++.+.++++||
T Consensus       175 ~d~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~~----------------------~~~~~~~~~~~l~~~GF  232 (304)
T 3bwc_A          175 IDTTDPAGPASKLFGEAFYKDVLRILKPDGICCNQGESIWL----------------------DLELIEKMSRFIRETGF  232 (304)
T ss_dssp             EECC---------CCHHHHHHHHHHEEEEEEEEEEECCTTT----------------------CHHHHHHHHHHHHHHTC
T ss_pred             ECCCCccccchhhhHHHHHHHHHHhcCCCcEEEEecCCccc----------------------chHHHHHHHHHHHhCCC
Confidence            97665554433    58899999999999999997654210                      01135678899999999


Q ss_pred             cEEEEee-------cCcEEEEEEEc
Q 019861          313 VDFKCTR-------NRGFVMFTATK  330 (334)
Q Consensus       313 ~~v~~~~-------~g~~~~~~a~K  330 (334)
                      ..+....       .|.+..+.+.|
T Consensus       233 ~~v~~~~~~vP~yp~g~w~f~~as~  257 (304)
T 3bwc_A          233 ASVQYALMHVPTYPCGSIGTLVCSK  257 (304)
T ss_dssp             SEEEEEECCCTTSTTSCCEEEEEES
T ss_pred             CcEEEEEeecccccCcceEEEEEeC
Confidence            8887542       35566666665

>1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A

Probab=99.44  E-value=3.2e-12  Score=110.77  Aligned_cols=138  Identities=11%  Similarity=0.094  Sum_probs=95.9

Q ss_pred             ccCCCCCCcEEEECCCcCHHHHHHHHc-CCCCeEEEEeCCHHHHHHHHHHHhcCC----------C-----CCCCCceEE
Q 019861          172 YLKPVLGGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQQES----------N-----FPKDSIDAV  235 (334)
Q Consensus       172 ~l~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~~v~giD~s~~~~~~a~~~~~~~~----------~-----~~~~~fD~V  235 (334)
                      .+...++.+|||+|||+|.++..+++. ++..+++|+|+++.+++.++++.....          .     ...++||+|
T Consensus        68 ~~~~~~~~~vLDlG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~D~v  147 (227)
T 1g8a_A           68 NFPIKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEERRNIVPILGDATKPEEYRALVPKVDVI  147 (227)
T ss_dssp             CCCCCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSCTTEEEEECCTTCGGGGTTTCCCEEEE
T ss_pred             hcCCCCCCEEEEEeccCCHHHHHHHHHhCCCeEEEEEECCHHHHHHHHHHHhccCCCEEEEccCCCcchhhcccCCceEE
Confidence            334556889999999999999999977 455699999999999998887764321          1     113579999


Q ss_pred             EeCccccCCCCH-HHHHHHHHHcccCCcEEEEEEeccCCCCCchHHHHHHHHHhhhhcCccCCCCHHHHHHHHHhCCCcE
Q 019861          236 HAGAAIHCWSSP-STGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLCRACGLVD  314 (334)
Q Consensus       236 ~~~~vl~h~~d~-~~~L~~i~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~l~~ll~~~Gf~~  314 (334)
                      ++...   .++. ..+++++.++|+|||++++.......... .+.               ..+..+++.++ +++ |++
T Consensus       148 ~~~~~---~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~-~~~---------------~~~~~~~l~~l-~~~-f~~  206 (227)
T 1g8a_A          148 FEDVA---QPTQAKILIDNAEVYLKRGGYGMIAVKSRSIDVT-KEP---------------EQVFREVEREL-SEY-FEV  206 (227)
T ss_dssp             EECCC---STTHHHHHHHHHHHHEEEEEEEEEEEEGGGTCTT-SCH---------------HHHHHHHHHHH-HTT-SEE
T ss_pred             EECCC---CHhHHHHHHHHHHHhcCCCCEEEEEEecCCCCCC-CCh---------------hhhhHHHHHHH-Hhh-cee
Confidence            98654   2333 34599999999999999998433211100 000               11245677777 777 999


Q ss_pred             EEEeecC----cEEEEEEEc
Q 019861          315 FKCTRNR----GFVMFTATK  330 (334)
Q Consensus       315 v~~~~~g----~~~~~~a~K  330 (334)
                      ++.....    .+.+++++|
T Consensus       207 ~~~~~~~~~~~~~~~~~~~~  226 (227)
T 1g8a_A          207 IERLNLEPYEKDHALFVVRK  226 (227)
T ss_dssp             EEEEECTTTSSSEEEEEEEC
T ss_pred             eeEeccCcccCCCEEEEEEe
Confidence            8866533    267777776

>1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20

Probab=99.44  E-value=3.8e-13  Score=114.78  Aligned_cols=122  Identities=16%  Similarity=0.055  Sum_probs=91.6

Q ss_pred             CCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCC-------------CCCCCCceEEEeCccccC
Q 019861          177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES-------------NFPKDSIDAVHAGAAIHC  243 (334)
Q Consensus       177 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~-------------~~~~~~fD~V~~~~vl~h  243 (334)
                      ++.+|||+|||+|.++..++...+..+++|+|+++.+++.++++.....             ..++++||+|++..    
T Consensus        65 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~i~~~~----  140 (207)
T 1jsx_A           65 QGERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELKLENIEPVQSRVEEFPSEPPFDGVISRA----  140 (207)
T ss_dssp             CSSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCSSEEEEECCTTTSCCCSCEEEEECSC----
T ss_pred             CCCeEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEecchhhCCccCCcCEEEEec----
Confidence            3679999999999999999988666799999999999999998754321             12357899999864    


Q ss_pred             CCCHHHHHHHHHHcccCCcEEEEEEeccCCCCCchHHHHHHHHHhhhhcCccCCCCHHHHHHHHHhCCCcEEEEe-----
Q 019861          244 WSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLCRACGLVDFKCT-----  318 (334)
Q Consensus       244 ~~d~~~~L~~i~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~l~~ll~~~Gf~~v~~~-----  318 (334)
                      +.++..+++++.++|+|||++++....                           ...+++.++++  ||+.++..     
T Consensus       141 ~~~~~~~l~~~~~~L~~gG~l~~~~~~---------------------------~~~~~~~~~~~--g~~~~~~~~~~~~  191 (207)
T 1jsx_A          141 FASLNDMVSWCHHLPGEQGRFYALKGQ---------------------------MPEDEIALLPE--EYQVESVVKLQVP  191 (207)
T ss_dssp             SSSHHHHHHHHTTSEEEEEEEEEEESS---------------------------CCHHHHHTSCT--TEEEEEEEEEECC
T ss_pred             cCCHHHHHHHHHHhcCCCcEEEEEeCC---------------------------CchHHHHHHhc--CCceeeeeeeccC
Confidence            356789999999999999999986321                           23556666655  99877622     


Q ss_pred             -ecCcEEEEEEEcC
Q 019861          319 -RNRGFVMFTATKP  331 (334)
Q Consensus       319 -~~g~~~~~~a~K~  331 (334)
                       ..+...++..+|.
T Consensus       192 ~~~~~~~~~~~~k~  205 (207)
T 1jsx_A          192 ALDGERHLVVIKAN  205 (207)
T ss_dssp             --CCEEEEEEEEEC
T ss_pred             CCCCceEEEEEEec
Confidence             1344555555554

>2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli}

Probab=99.44  E-value=3.6e-13  Score=124.43  Aligned_cols=107  Identities=20%  Similarity=0.269  Sum_probs=87.6

Q ss_pred             HHHHHHcccCCCCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCC-----------CCCCCCce
Q 019861          165 EFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES-----------NFPKDSID  233 (334)
Q Consensus       165 ~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~-----------~~~~~~fD  233 (334)
                      ..+.+.+.+...++.+|||+|||+|.++..+++.++..+++|+|+|+.+++.+++++....           .+.+++||
T Consensus       184 ~~~~ll~~l~~~~~~~VLDlGcG~G~~~~~la~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~d~~~~~~~~fD  263 (343)
T 2pjd_A          184 GSQLLLSTLTPHTKGKVLDVGCGAGVLSVAFARHSPKIRLTLCDVSAPAVEASRATLAANGVEGEVFASNVFSEVKGRFD  263 (343)
T ss_dssp             HHHHHHHHSCTTCCSBCCBTTCTTSHHHHHHHHHCTTCBCEEEESBHHHHHHHHHHHHHTTCCCEEEECSTTTTCCSCEE
T ss_pred             HHHHHHHhcCcCCCCeEEEecCccCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCCEEEEccccccccCCee
Confidence            3455666665555779999999999999999999876799999999999999998865321           23467899


Q ss_pred             EEEeCccccC-----CCCHHHHHHHHHHcccCCcEEEEEEecc
Q 019861          234 AVHAGAAIHC-----WSSPSTGVAEISRVLRPGGVFVGTTYIV  271 (334)
Q Consensus       234 ~V~~~~vl~h-----~~d~~~~L~~i~r~LkpgG~lii~~~~~  271 (334)
                      +|+++..+|+     ..+...+++++.++|+|||.+++..+..
T Consensus       264 ~Iv~~~~~~~g~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~  306 (343)
T 2pjd_A          264 MIISNPPFHDGMQTSLDAAQTLIRGAVRHLNSGGELRIVANAF  306 (343)
T ss_dssp             EEEECCCCCSSSHHHHHHHHHHHHHHGGGEEEEEEEEEEEETT
T ss_pred             EEEECCCcccCccCCHHHHHHHHHHHHHhCCCCcEEEEEEcCC
Confidence            9999998885     3355789999999999999999987653

>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli}

Probab=99.43  E-value=1.9e-12  Score=120.89  Aligned_cols=106  Identities=19%  Similarity=0.170  Sum_probs=84.6

Q ss_pred             HHHHHHcccCCCCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcC----------------CCCC
Q 019861          165 EFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQE----------------SNFP  228 (334)
Q Consensus       165 ~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~----------------~~~~  228 (334)
                      ..+.+.+.+...++.+|||+|||+|.++..+++.++..+|+|+|+++.+++.++++....                .+++
T Consensus       210 ~~~~ll~~l~~~~~~~VLDlGcG~G~~s~~la~~~p~~~V~gvD~s~~al~~Ar~n~~~ngl~~~~~v~~~~~D~~~~~~  289 (375)
T 4dcm_A          210 GARFFMQHLPENLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSGVE  289 (375)
T ss_dssp             HHHHHHHTCCCSCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGGGEEEEECSTTTTCC
T ss_pred             HHHHHHHhCcccCCCeEEEEeCcchHHHHHHHHHCCCCEEEEEECcHHHHHHHHHHHHHcCCCcCceEEEEechhhccCC
Confidence            344667777776778999999999999999999987789999999999999999876431                1355


Q ss_pred             CCCceEEEeCccccCCC---CH--HHHHHHHHHcccCCcEEEEEEec
Q 019861          229 KDSIDAVHAGAAIHCWS---SP--STGVAEISRVLRPGGVFVGTTYI  270 (334)
Q Consensus       229 ~~~fD~V~~~~vl~h~~---d~--~~~L~~i~r~LkpgG~lii~~~~  270 (334)
                      +++||+|+++-.+++..   +.  ..+++++.++|+|||++++....
T Consensus       290 ~~~fD~Ii~nppfh~~~~~~~~~~~~~l~~~~~~LkpgG~l~iv~n~  336 (375)
T 4dcm_A          290 PFRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIVANR  336 (375)
T ss_dssp             TTCEEEEEECCCC-------CCHHHHHHHHHHHHEEEEEEEEEEEET
T ss_pred             CCCeeEEEECCCcccCcccCHHHHHHHHHHHHHhCCCCcEEEEEEEC
Confidence            67999999998887632   22  36899999999999999997654

>3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A*

Probab=99.41  E-value=6e-13  Score=115.05  Aligned_cols=94  Identities=16%  Similarity=0.112  Sum_probs=76.7

Q ss_pred             CCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCC-----------------CCCCCCceEEEeCc
Q 019861          177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES-----------------NFPKDSIDAVHAGA  239 (334)
Q Consensus       177 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~-----------------~~~~~~fD~V~~~~  239 (334)
                      .+.+|||||||+|.++..+++..+...|+|+|+++.+++.|+++.....                 .+++++||.|++.+
T Consensus        34 ~~~~vLDiGcG~G~~~~~lA~~~p~~~v~giD~s~~~l~~a~~~~~~~~l~nv~~~~~Da~~~l~~~~~~~~~d~v~~~~  113 (218)
T 3dxy_A           34 EAPVTLEIGFGMGASLVAMAKDRPEQDFLGIEVHSPGVGACLASAHEEGLSNLRVMCHDAVEVLHKMIPDNSLRMVQLFF  113 (218)
T ss_dssp             CCCEEEEESCTTCHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHTTCSSEEEECSCHHHHHHHHSCTTCEEEEEEES
T ss_pred             CCCeEEEEeeeChHHHHHHHHHCCCCeEEEEEecHHHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHcCCCChheEEEeC
Confidence            4679999999999999999999887899999999999999998765321                 16788999999875


Q ss_pred             cccCCCCH--------HHHHHHHHHcccCCcEEEEEEec
Q 019861          240 AIHCWSSP--------STGVAEISRVLRPGGVFVGTTYI  270 (334)
Q Consensus       240 vl~h~~d~--------~~~L~~i~r~LkpgG~lii~~~~  270 (334)
                      ...+....        ..+++++.++|||||++++.+..
T Consensus       114 ~~p~~~~~~~~rr~~~~~~l~~~~r~LkpGG~l~i~td~  152 (218)
T 3dxy_A          114 PDPWHKARHNKRRIVQVPFAELVKSKLQLGGVFHMATDW  152 (218)
T ss_dssp             CCCCCSGGGGGGSSCSHHHHHHHHHHEEEEEEEEEEESC
T ss_pred             CCCccchhhhhhhhhhHHHHHHHHHHcCCCcEEEEEeCC
Confidence            43322211        25899999999999999998764

>3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A*

Probab=99.40  E-value=3.8e-12  Score=109.93  Aligned_cols=133  Identities=10%  Similarity=0.108  Sum_probs=99.6

Q ss_pred             HHHHHcccCCCCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCC--------------CCCCC-
Q 019861          166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES--------------NFPKD-  230 (334)
Q Consensus       166 ~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~--------------~~~~~-  230 (334)
                      .+.+..++++  +.+|||||||+|.++..++..++..+|+++|+++.+++.|+++....+              +++.+ 
T Consensus         6 L~~l~~~v~~--g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl~~~i~~~~~d~l~~l~~~~   83 (225)
T 3kr9_A            6 LELVASFVSQ--GAILLDVGSDHAYLPIELVERGQIKSAIAGEVVEGPYQSAVKNVEAHGLKEKIQVRLANGLAAFEETD   83 (225)
T ss_dssp             HHHHHTTSCT--TEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGGG
T ss_pred             HHHHHHhCCC--CCEEEEeCCCcHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEECchhhhcccCc
Confidence            3455666654  679999999999999999999877789999999999999999876432              23333 


Q ss_pred             CceEEEeCccccCCCCHHHHHHHHHHcccCCcEEEEEEeccCCCCCchHHHHHHHHHhhhhcCccCCCCHHHHHHHHHhC
Q 019861          231 SIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLCRAC  310 (334)
Q Consensus       231 ~fD~V~~~~vl~h~~d~~~~L~~i~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~l~~ll~~~  310 (334)
                      .||+|+....--.  -...+|.+..+.|+++|++++....                            ..+.++++|.+.
T Consensus        84 ~~D~IviaG~Gg~--~i~~Il~~~~~~L~~~~~lVlq~~~----------------------------~~~~vr~~L~~~  133 (225)
T 3kr9_A           84 QVSVITIAGMGGR--LIARILEEGLGKLANVERLILQPNN----------------------------REDDLRIWLQDH  133 (225)
T ss_dssp             CCCEEEEEEECHH--HHHHHHHHTGGGCTTCCEEEEEESS----------------------------CHHHHHHHHHHT
T ss_pred             CCCEEEEcCCChH--HHHHHHHHHHHHhCCCCEEEEECCC----------------------------CHHHHHHHHHHC
Confidence            6999887543211  1356799999999999998884321                            467899999999


Q ss_pred             CCcEEEEe---ecCc-EEEEEEEc
Q 019861          311 GLVDFKCT---RNRG-FVMFTATK  330 (334)
Q Consensus       311 Gf~~v~~~---~~g~-~~~~~a~K  330 (334)
                      ||.+++..   ..+. |-++.+.+
T Consensus       134 Gf~i~~e~lv~e~~~~Yeii~~~~  157 (225)
T 3kr9_A          134 GFQIVAESILEEAGKFYEILVVEA  157 (225)
T ss_dssp             TEEEEEEEEEEETTEEEEEEEEEE
T ss_pred             CCEEEEEEEEEECCEEEEEEEEEe
Confidence            99988843   3554 44555554

>3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A*

Probab=99.40  E-value=2.7e-12  Score=113.22  Aligned_cols=116  Identities=10%  Similarity=-0.078  Sum_probs=89.5

Q ss_pred             CCCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCC--------------CC---CCCCceEEEe
Q 019861          175 PVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES--------------NF---PKDSIDAVHA  237 (334)
Q Consensus       175 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~--------------~~---~~~~fD~V~~  237 (334)
                      ..++.+|||||||+|..+..++...+..+|+++|+++.+++.++++.....              +.   .+++||+|++
T Consensus        78 ~~~~~~vLDiG~G~G~~~i~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~l~~v~~~~~d~~~~~~~~~~~~~fD~I~s  157 (249)
T 3g89_A           78 WQGPLRVLDLGTGAGFPGLPLKIVRPELELVLVDATRKKVAFVERAIEVLGLKGARALWGRAEVLAREAGHREAYARAVA  157 (249)
T ss_dssp             CCSSCEEEEETCTTTTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEECCHHHHTTSTTTTTCEEEEEE
T ss_pred             cCCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCceEEEECcHHHhhcccccCCCceEEEE
Confidence            345789999999999999999988777899999999999999998765321              11   2478999999


Q ss_pred             CccccCCCCHHHHHHHHHHcccCCcEEEEEEeccCCCCCchHHHHHHHHHhhhhcCccCCCCHHHHHHHHHhCCCcEEEE
Q 019861          238 GAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLCRACGLVDFKC  317 (334)
Q Consensus       238 ~~vl~h~~d~~~~L~~i~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~l~~ll~~~Gf~~v~~  317 (334)
                      ..+    .+...+++.+.++|+|||++++......    . .                   ..+++.+.++..||++.+.
T Consensus       158 ~a~----~~~~~ll~~~~~~LkpgG~l~~~~g~~~----~-~-------------------e~~~~~~~l~~~G~~~~~~  209 (249)
T 3g89_A          158 RAV----APLCVLSELLLPFLEVGGAAVAMKGPRV----E-E-------------------ELAPLPPALERLGGRLGEV  209 (249)
T ss_dssp             ESS----CCHHHHHHHHGGGEEEEEEEEEEECSCC----H-H-------------------HHTTHHHHHHHHTEEEEEE
T ss_pred             CCc----CCHHHHHHHHHHHcCCCeEEEEEeCCCc----H-H-------------------HHHHHHHHHHHcCCeEEEE
Confidence            753    5678899999999999999988653210    0 0                   1235677788899988774


Q ss_pred             e
Q 019861          318 T  318 (334)
Q Consensus       318 ~  318 (334)
                      .
T Consensus       210 ~  210 (249)
T 3g89_A          210 L  210 (249)
T ss_dssp             E
T ss_pred             E
Confidence            4

>2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13

Probab=99.40  E-value=6.5e-13  Score=122.32  Aligned_cols=102  Identities=17%  Similarity=0.268  Sum_probs=79.1

Q ss_pred             HHHHHHcccCCCCCCcEEEECCCcCHHHHHHHHc-CCCCeEEEEeCCHHHHHHHHHHHhc--------------CC----
Q 019861          165 EFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQQ--------------ES----  225 (334)
Q Consensus       165 ~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~~v~giD~s~~~~~~a~~~~~~--------------~~----  225 (334)
                      ....+...+...++.+|||+|||+|.++..++.. ++..+++|+|+++.+++.|++++..              ..    
T Consensus        93 ~~~~~l~~l~~~~g~~VLDiG~G~G~~~~~la~~~g~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~ln~~~~~~~~v~~~  172 (336)
T 2b25_A           93 DINMILSMMDINPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFI  172 (336)
T ss_dssp             HHHHHHHHHTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEE
T ss_pred             HHHHHHHhcCCCCCCEEEEeCCCcCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhhcccccccccccCCceEEE
Confidence            3455566666777899999999999999999987 6667999999999999999987652              10    


Q ss_pred             ---------CCCCCCceEEEeCccccCCCCHHHHHHHHHHcccCCcEEEEEEecc
Q 019861          226 ---------NFPKDSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIV  271 (334)
Q Consensus       226 ---------~~~~~~fD~V~~~~vl~h~~d~~~~L~~i~r~LkpgG~lii~~~~~  271 (334)
                               ++++++||+|++.     .+++..+++++.++|+|||++++..+..
T Consensus       173 ~~d~~~~~~~~~~~~fD~V~~~-----~~~~~~~l~~~~~~LkpgG~lv~~~~~~  222 (336)
T 2b25_A          173 HKDISGATEDIKSLTFDAVALD-----MLNPHVTLPVFYPHLKHGGVCAVYVVNI  222 (336)
T ss_dssp             ESCTTCCC-------EEEEEEC-----SSSTTTTHHHHGGGEEEEEEEEEEESSH
T ss_pred             ECChHHcccccCCCCeeEEEEC-----CCCHHHHHHHHHHhcCCCcEEEEEeCCH
Confidence                     2345689999984     3566668999999999999999888754

>3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae}

Probab=99.39  E-value=6.4e-12  Score=108.72  Aligned_cols=133  Identities=11%  Similarity=0.145  Sum_probs=99.3

Q ss_pred             HHHHHcccCCCCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCC--------------CCCC-C
Q 019861          166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES--------------NFPK-D  230 (334)
Q Consensus       166 ~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~--------------~~~~-~  230 (334)
                      .+.+..++++  +.+|||||||+|.++..++..++..+|+++|+++.+++.|++++...+              .+.. +
T Consensus        12 L~~i~~~v~~--g~~VlDIGtGsG~l~i~la~~~~~~~V~AvDi~~~al~~A~~N~~~~gl~~~I~~~~gD~l~~~~~~~   89 (230)
T 3lec_A           12 LQKVANYVPK--GARLLDVGSDHAYLPIFLLQMGYCDFAIAGEVVNGPYQSALKNVSEHGLTSKIDVRLANGLSAFEEAD   89 (230)
T ss_dssp             HHHHHTTSCT--TEEEEEETCSTTHHHHHHHHTTCEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGGG
T ss_pred             HHHHHHhCCC--CCEEEEECCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhcccccc
Confidence            4466667665  689999999999999999999876789999999999999999876432              1222 3


Q ss_pred             CceEEEeCccccCCCCHHHHHHHHHHcccCCcEEEEEEeccCCCCCchHHHHHHHHHhhhhcCccCCCCHHHHHHHHHhC
Q 019861          231 SIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLCRAC  310 (334)
Q Consensus       231 ~fD~V~~~~vl~h~~d~~~~L~~i~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~l~~ll~~~  310 (334)
                      .||+|+.....-.  -...+|.+..+.|+++|+++++...                            ..+.++++|.+.
T Consensus        90 ~~D~IviaGmGg~--lI~~IL~~~~~~l~~~~~lIlqp~~----------------------------~~~~lr~~L~~~  139 (230)
T 3lec_A           90 NIDTITICGMGGR--LIADILNNDIDKLQHVKTLVLQPNN----------------------------REDDLRKWLAAN  139 (230)
T ss_dssp             CCCEEEEEEECHH--HHHHHHHHTGGGGTTCCEEEEEESS----------------------------CHHHHHHHHHHT
T ss_pred             ccCEEEEeCCchH--HHHHHHHHHHHHhCcCCEEEEECCC----------------------------ChHHHHHHHHHC
Confidence            7999886554221  1346788889999999998885532                            367899999999


Q ss_pred             CCcEEEEe---ecC-cEEEEEEEc
Q 019861          311 GLVDFKCT---RNR-GFVMFTATK  330 (334)
Q Consensus       311 Gf~~v~~~---~~g-~~~~~~a~K  330 (334)
                      ||.+++..   ..+ .|-++.+.+
T Consensus       140 Gf~i~~E~lv~e~~~~Yeii~~~~  163 (230)
T 3lec_A          140 DFEIVAEDILTENDKRYEILVVKH  163 (230)
T ss_dssp             TEEEEEEEEEEC--CEEEEEEEEE
T ss_pred             CCEEEEEEEEEECCEEEEEEEEEe
Confidence            99998844   234 455666554

>2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii}

Probab=99.39  E-value=1.6e-12  Score=111.68  Aligned_cols=99  Identities=16%  Similarity=0.167  Sum_probs=80.5

Q ss_pred             HHHHcccCCCCCCcEEEECCCcCHHHHHHHHcC-CCCeEEEEeCCHHHHHHHHHHHhcC-------------CCCC-CCC
Q 019861          167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSG-LFSLVVALDYSENMLKQCYEFVQQE-------------SNFP-KDS  231 (334)
Q Consensus       167 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~~v~giD~s~~~~~~a~~~~~~~-------------~~~~-~~~  231 (334)
                      ..+...+...++.+|||||||+|.++..+++.+ +..+++++|+++.+++.+++++...             ..++ +++
T Consensus        67 ~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~  146 (215)
T 2yxe_A           67 GMMCELLDLKPGMKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIPELAEKAERTLRKLGYDNVIVIVGDGTLGYEPLAP  146 (215)
T ss_dssp             HHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHTCTTEEEEESCGGGCCGGGCC
T ss_pred             HHHHHhhCCCCCCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCCCCCCC
Confidence            345555666678899999999999999998875 4469999999999999999875421             1233 568


Q ss_pred             ceEEEeCccccCCCCHHHHHHHHHHcccCCcEEEEEEecc
Q 019861          232 IDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIV  271 (334)
Q Consensus       232 fD~V~~~~vl~h~~d~~~~L~~i~r~LkpgG~lii~~~~~  271 (334)
                      ||+|++..+++|++      +++.++|+|||++++..+..
T Consensus       147 fD~v~~~~~~~~~~------~~~~~~L~pgG~lv~~~~~~  180 (215)
T 2yxe_A          147 YDRIYTTAAGPKIP------EPLIRQLKDGGKLLMPVGRY  180 (215)
T ss_dssp             EEEEEESSBBSSCC------HHHHHTEEEEEEEEEEESSS
T ss_pred             eeEEEECCchHHHH------HHHHHHcCCCcEEEEEECCC
Confidence            99999999999986      47899999999999988754

>1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7

Probab=99.39  E-value=2.2e-12  Score=112.07  Aligned_cols=98  Identities=16%  Similarity=0.207  Sum_probs=81.3

Q ss_pred             HHHHHcccCCCCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCC-----------CC-CCCCce
Q 019861          166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES-----------NF-PKDSID  233 (334)
Q Consensus       166 ~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~-----------~~-~~~~fD  233 (334)
                      .+.+...+...++.+|||||||+|.++..++..+.  +++|+|+++.+++.++++.....           .+ .+++||
T Consensus        59 ~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~--~v~~vD~~~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~fD  136 (231)
T 1vbf_A           59 GIFMLDELDLHKGQKVLEIGTGIGYYTALIAEIVD--KVVSVEINEKMYNYASKLLSYYNNIKLILGDGTLGYEEEKPYD  136 (231)
T ss_dssp             HHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHSS--EEEEEESCHHHHHHHHHHHTTCSSEEEEESCGGGCCGGGCCEE
T ss_pred             HHHHHHhcCCCCCCEEEEEcCCCCHHHHHHHHHcC--EEEEEeCCHHHHHHHHHHHhhcCCeEEEECCcccccccCCCcc
Confidence            44555666666788999999999999999999874  99999999999999998865321           12 357899


Q ss_pred             EEEeCccccCCCCHHHHHHHHHHcccCCcEEEEEEecc
Q 019861          234 AVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIV  271 (334)
Q Consensus       234 ~V~~~~vl~h~~d~~~~L~~i~r~LkpgG~lii~~~~~  271 (334)
                      +|++..+++|+.      .++.++|+|||++++..+..
T Consensus       137 ~v~~~~~~~~~~------~~~~~~L~pgG~l~~~~~~~  168 (231)
T 1vbf_A          137 RVVVWATAPTLL------CKPYEQLKEGGIMILPIGVG  168 (231)
T ss_dssp             EEEESSBBSSCC------HHHHHTEEEEEEEEEEECSS
T ss_pred             EEEECCcHHHHH------HHHHHHcCCCcEEEEEEcCC
Confidence            999999999986      36899999999999988764

>1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46

Probab=99.39  E-value=9.4e-13  Score=108.54  Aligned_cols=93  Identities=15%  Similarity=0.158  Sum_probs=75.4

Q ss_pred             CCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCC-C-----------C-----CCCCceEEEeCc
Q 019861          177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES-N-----------F-----PKDSIDAVHAGA  239 (334)
Q Consensus       177 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~-~-----------~-----~~~~fD~V~~~~  239 (334)
                      ++.+|||+|||+|.++..++..++  .++|+|+++.+++.++++..... .           .     ..++||+|++..
T Consensus        41 ~~~~vLD~GcG~G~~~~~l~~~~~--~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~i~~~~  118 (171)
T 1ws6_A           41 RRGRFLDPFAGSGAVGLEAASEGW--EAVLVEKDPEAVRLLKENVRRTGLGARVVALPVEVFLPEAKAQGERFTVAFMAP  118 (171)
T ss_dssp             TCCEEEEETCSSCHHHHHHHHTTC--EEEEECCCHHHHHHHHHHHHHHTCCCEEECSCHHHHHHHHHHTTCCEEEEEECC
T ss_pred             CCCeEEEeCCCcCHHHHHHHHCCC--eEEEEeCCHHHHHHHHHHHHHcCCceEEEeccHHHHHHhhhccCCceEEEEECC
Confidence            477999999999999999999987  69999999999999998765321 0           0     123799999997


Q ss_pred             cccCCCCHHHHHHHHH--HcccCCcEEEEEEeccCC
Q 019861          240 AIHCWSSPSTGVAEIS--RVLRPGGVFVGTTYIVDG  273 (334)
Q Consensus       240 vl~h~~d~~~~L~~i~--r~LkpgG~lii~~~~~~~  273 (334)
                      .++  .+...+++.+.  ++|+|||++++..+....
T Consensus       119 ~~~--~~~~~~~~~~~~~~~L~~gG~~~~~~~~~~~  152 (171)
T 1ws6_A          119 PYA--MDLAALFGELLASGLVEAGGLYVLQHPKDLY  152 (171)
T ss_dssp             CTT--SCTTHHHHHHHHHTCEEEEEEEEEEEETTSC
T ss_pred             CCc--hhHHHHHHHHHhhcccCCCcEEEEEeCCccC
Confidence            765  55566777777  999999999998887653

>2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A*

Probab=99.38  E-value=6.8e-12  Score=112.44  Aligned_cols=122  Identities=14%  Similarity=0.080  Sum_probs=92.8

Q ss_pred             HHHcccCCCCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCC--------------CCCCCCce
Q 019861          168 LMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES--------------NFPKDSID  233 (334)
Q Consensus       168 ~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~--------------~~~~~~fD  233 (334)
                      .+...+.  ++.+|||+|||+|.++..++..+.. +|+|+|+|+.+++.|+++.....              ...+++||
T Consensus       118 ~l~~~~~--~~~~VLDlgcG~G~~~~~la~~~~~-~V~~vD~s~~~~~~a~~n~~~n~~~~~v~~~~~D~~~~~~~~~fD  194 (278)
T 2frn_A          118 RMAKVAK--PDELVVDMFAGIGHLSLPIAVYGKA-KVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPGENIAD  194 (278)
T ss_dssp             HHHHHCC--TTCEEEETTCTTTTTHHHHHHHTCC-EEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCCCSCEE
T ss_pred             HHHHhCC--CCCEEEEecccCCHHHHHHHHhCCC-EEEEEECCHHHHHHHHHHHHHcCCCceEEEEECCHHHhcccCCcc
Confidence            3444443  4789999999999999999998863 79999999999999998765321              12257899


Q ss_pred             EEEeCccccCCCCHHHHHHHHHHcccCCcEEEEEEeccCCCCCchHHHHHHHHHhhhhcCccCCCCHHHHHHHHHhCCCc
Q 019861          234 AVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLCRACGLV  313 (334)
Q Consensus       234 ~V~~~~vl~h~~d~~~~L~~i~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~l~~ll~~~Gf~  313 (334)
                      +|++...    .+...++.++.++|+|||++++.+.....                    ....-..+.+.+.++++||+
T Consensus       195 ~Vi~~~p----~~~~~~l~~~~~~LkpgG~l~~~~~~~~~--------------------~~~~~~~~~i~~~~~~~G~~  250 (278)
T 2frn_A          195 RILMGYV----VRTHEFIPKALSIAKDGAIIHYHNTVPEK--------------------LMPREPFETFKRITKEYGYD  250 (278)
T ss_dssp             EEEECCC----SSGGGGHHHHHHHEEEEEEEEEEEEEEGG--------------------GTTTTTHHHHHHHHHHTTCE
T ss_pred             EEEECCc----hhHHHHHHHHHHHCCCCeEEEEEEeeccc--------------------cccccHHHHHHHHHHHcCCe
Confidence            9998543    34567899999999999999998876421                    11112467889999999997


Q ss_pred             EEE
Q 019861          314 DFK  316 (334)
Q Consensus       314 ~v~  316 (334)
                      +..
T Consensus       251 ~~~  253 (278)
T 2frn_A          251 VEK  253 (278)
T ss_dssp             EEE
T ss_pred             eEE
Confidence            654

>1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13

Probab=99.38  E-value=2.9e-12  Score=114.59  Aligned_cols=104  Identities=20%  Similarity=0.260  Sum_probs=85.0

Q ss_pred             HHHHHHHHcccCCCCCCcEEEECCCcCHHHHHHHHc-CCCCeEEEEeCCHHHHHHHHHHHhcC-----------------
Q 019861          163 EKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQQE-----------------  224 (334)
Q Consensus       163 ~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~~v~giD~s~~~~~~a~~~~~~~-----------------  224 (334)
                      ......+...+...++.+|||+|||+|.++..++.. ++..+++++|+++.+++.+++++...                 
T Consensus        85 ~~~~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~g~~~~~v~~~~~d~~~  164 (280)
T 1i9g_A           85 PKDAAQIVHEGDIFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLAD  164 (280)
T ss_dssp             HHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGG
T ss_pred             HHHHHHHHHHcCCCCCCEEEEEcccccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCCcEEEEECchHh
Confidence            334456666677777889999999999999999985 55669999999999999999876422                 


Q ss_pred             CCCCCCCceEEEeCccccCCCCHHHHHHHHHHcccCCcEEEEEEecc
Q 019861          225 SNFPKDSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIV  271 (334)
Q Consensus       225 ~~~~~~~fD~V~~~~vl~h~~d~~~~L~~i~r~LkpgG~lii~~~~~  271 (334)
                      .++++++||+|++     +++++..+|+++.++|+|||++++.++..
T Consensus       165 ~~~~~~~~D~v~~-----~~~~~~~~l~~~~~~L~pgG~l~~~~~~~  206 (280)
T 1i9g_A          165 SELPDGSVDRAVL-----DMLAPWEVLDAVSRLLVAGGVLMVYVATV  206 (280)
T ss_dssp             CCCCTTCEEEEEE-----ESSCGGGGHHHHHHHEEEEEEEEEEESSH
T ss_pred             cCCCCCceeEEEE-----CCcCHHHHHHHHHHhCCCCCEEEEEeCCH
Confidence            1245678999998     56788899999999999999999988753

>3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A*

Probab=99.38  E-value=1.4e-12  Score=120.69  Aligned_cols=93  Identities=17%  Similarity=0.283  Sum_probs=75.7

Q ss_pred             CCCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCC---------------CCCCCCceEEEeCc
Q 019861          175 PVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES---------------NFPKDSIDAVHAGA  239 (334)
Q Consensus       175 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~---------------~~~~~~fD~V~~~~  239 (334)
                      ..++.+|||||||+|.++..+++.+ ..+|+|+|+| .+++.|+++.....               ++++++||+|++..
T Consensus        64 ~~~~~~VLDvGcG~G~~~~~la~~g-~~~v~gvD~s-~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~Iis~~  141 (349)
T 3q7e_A           64 LFKDKVVLDVGSGTGILCMFAAKAG-ARKVIGIECS-SISDYAVKIVKANKLDHVVTIIKGKVEEVELPVEKVDIIISEW  141 (349)
T ss_dssp             HHTTCEEEEESCTTSHHHHHHHHTT-CSEEEEEECS-THHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSSCEEEEEECC
T ss_pred             cCCCCEEEEEeccchHHHHHHHHCC-CCEEEEECcH-HHHHHHHHHHHHcCCCCcEEEEECcHHHccCCCCceEEEEEcc
Confidence            3457899999999999999999985 4699999999 59999998765321               45678999999966


Q ss_pred             c---ccCCCCHHHHHHHHHHcccCCcEEEEEEe
Q 019861          240 A---IHCWSSPSTGVAEISRVLRPGGVFVGTTY  269 (334)
Q Consensus       240 v---l~h~~d~~~~L~~i~r~LkpgG~lii~~~  269 (334)
                      +   +.+..++..+++++.++|||||+++....
T Consensus       142 ~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~~~  174 (349)
T 3q7e_A          142 MGYCLFYESMLNTVLHARDKWLAPDGLIFPDRA  174 (349)
T ss_dssp             CBBTBTBTCCHHHHHHHHHHHEEEEEEEESCEE
T ss_pred             ccccccCchhHHHHHHHHHHhCCCCCEEccccc
Confidence            5   44557889999999999999999875433

>3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A*

Probab=99.37  E-value=3.3e-12  Score=119.37  Aligned_cols=93  Identities=20%  Similarity=0.268  Sum_probs=79.0

Q ss_pred             CCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCC-------------CCCCCCceEEEeCcccc
Q 019861          176 VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES-------------NFPKDSIDAVHAGAAIH  242 (334)
Q Consensus       176 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~-------------~~~~~~fD~V~~~~vl~  242 (334)
                      .++.+|||+|||+|.++..+++.+.  +|+|+|+|+.+++.+++++....             ..++++||+|+++..++
T Consensus       232 ~~~~~VLDlGcG~G~~~~~la~~g~--~V~gvDis~~al~~A~~n~~~~~~~v~~~~~D~~~~~~~~~~fD~Ii~npp~~  309 (381)
T 3dmg_A          232 VRGRQVLDLGAGYGALTLPLARMGA--EVVGVEDDLASVLSLQKGLEANALKAQALHSDVDEALTEEARFDIIVTNPPFH  309 (381)
T ss_dssp             TTTCEEEEETCTTSTTHHHHHHTTC--EEEEEESBHHHHHHHHHHHHHTTCCCEEEECSTTTTSCTTCCEEEEEECCCCC
T ss_pred             CCCCEEEEEeeeCCHHHHHHHHcCC--EEEEEECCHHHHHHHHHHHHHcCCCeEEEEcchhhccccCCCeEEEEECCchh
Confidence            3578999999999999999999865  99999999999999999875422             23347999999999988


Q ss_pred             C-----CCCHHHHHHHHHHcccCCcEEEEEEec
Q 019861          243 C-----WSSPSTGVAEISRVLRPGGVFVGTTYI  270 (334)
Q Consensus       243 h-----~~d~~~~L~~i~r~LkpgG~lii~~~~  270 (334)
                      +     ..+...+++++.++|+|||++++....
T Consensus       310 ~~~~~~~~~~~~~l~~~~~~LkpGG~l~iv~n~  342 (381)
T 3dmg_A          310 VGGAVILDVAQAFVNVAAARLRPGGVFFLVSNP  342 (381)
T ss_dssp             TTCSSCCHHHHHHHHHHHHHEEEEEEEEEEECT
T ss_pred             hcccccHHHHHHHHHHHHHhcCcCcEEEEEEcC
Confidence            8     345678999999999999999997654

>2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46

Probab=99.36  E-value=3.2e-12  Score=107.01  Aligned_cols=107  Identities=18%  Similarity=0.098  Sum_probs=81.4

Q ss_pred             HHHHHHHcccC-CCCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCC-----------------
Q 019861          164 KEFELMKGYLK-PVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES-----------------  225 (334)
Q Consensus       164 ~~~~~l~~~l~-~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~-----------------  225 (334)
                      ...+.+...+. ..++.+|||+|||+|.++..++..+ ..+++|+|+++.+++.++++.....                 
T Consensus        30 ~~~~~~~~~l~~~~~~~~vLD~GcG~G~~~~~~~~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~  108 (187)
T 2fhp_A           30 KVKESIFNMIGPYFDGGMALDLYSGSGGLAIEAVSRG-MDKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRALE  108 (187)
T ss_dssp             HHHHHHHHHHCSCCSSCEEEETTCTTCHHHHHHHHTT-CSEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHH
T ss_pred             HHHHHHHHHHHhhcCCCCEEEeCCccCHHHHHHHHcC-CCEEEEEECCHHHHHHHHHHHHHhCCCcceEEEECcHHHHHH
Confidence            33444444443 2457899999999999999888764 3599999999999999998764211                 


Q ss_pred             --CCCCCCceEEEeCccccCCCCHHHHHHHH--HHcccCCcEEEEEEeccC
Q 019861          226 --NFPKDSIDAVHAGAAIHCWSSPSTGVAEI--SRVLRPGGVFVGTTYIVD  272 (334)
Q Consensus       226 --~~~~~~fD~V~~~~vl~h~~d~~~~L~~i--~r~LkpgG~lii~~~~~~  272 (334)
                        +..+++||+|++...++ ..+....++.+  .++|+|||++++..+...
T Consensus       109 ~~~~~~~~fD~i~~~~~~~-~~~~~~~~~~l~~~~~L~~gG~l~~~~~~~~  158 (187)
T 2fhp_A          109 QFYEEKLQFDLVLLDPPYA-KQEIVSQLEKMLERQLLTNEAVIVCETDKTV  158 (187)
T ss_dssp             HHHHTTCCEEEEEECCCGG-GCCHHHHHHHHHHTTCEEEEEEEEEEEETTC
T ss_pred             HHHhcCCCCCEEEECCCCC-chhHHHHHHHHHHhcccCCCCEEEEEeCCcc
Confidence              01267899999987744 45677778888  889999999999888754

>2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A*

Probab=99.36  E-value=2.8e-12  Score=118.32  Aligned_cols=97  Identities=21%  Similarity=0.331  Sum_probs=78.5

Q ss_pred             HHHHcccCCCCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcC---------------CCCCCCC
Q 019861          167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQE---------------SNFPKDS  231 (334)
Q Consensus       167 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~---------------~~~~~~~  231 (334)
                      +.+.+.+...++.+|||||||+|.++..+++.+ ..+|+|+|+++ +++.|++++...               .++++++
T Consensus        54 ~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~g-~~~v~gvD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~  131 (340)
T 2fyt_A           54 DFIYQNPHIFKDKVVLDVGCGTGILSMFAAKAG-AKKVLGVDQSE-ILYQAMDIIRLNKLEDTITLIKGKIEEVHLPVEK  131 (340)
T ss_dssp             HHHHHCGGGTTTCEEEEETCTTSHHHHHHHHTT-CSEEEEEESST-HHHHHHHHHHHTTCTTTEEEEESCTTTSCCSCSC
T ss_pred             HHHHhhhhhcCCCEEEEeeccCcHHHHHHHHcC-CCEEEEEChHH-HHHHHHHHHHHcCCCCcEEEEEeeHHHhcCCCCc
Confidence            345555555668899999999999999999886 35999999996 999998876432               1355679


Q ss_pred             ceEEEeCc---cccCCCCHHHHHHHHHHcccCCcEEE
Q 019861          232 IDAVHAGA---AIHCWSSPSTGVAEISRVLRPGGVFV  265 (334)
Q Consensus       232 fD~V~~~~---vl~h~~d~~~~L~~i~r~LkpgG~li  265 (334)
                      ||+|++..   .+.|..++..+|+++.++|||||+++
T Consensus       132 ~D~Ivs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li  168 (340)
T 2fyt_A          132 VDVIISEWMGYFLLFESMLDSVLYAKNKYLAKGGSVY  168 (340)
T ss_dssp             EEEEEECCCBTTBTTTCHHHHHHHHHHHHEEEEEEEE
T ss_pred             EEEEEEcCchhhccCHHHHHHHHHHHHhhcCCCcEEE
Confidence            99999866   56676778889999999999999988

>1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1

Probab=99.35  E-value=2.9e-12  Score=117.07  Aligned_cols=100  Identities=14%  Similarity=0.186  Sum_probs=81.3

Q ss_pred             HHHHHcccCCCCCCcEEEECCCcCHHHHHHHHcCC-CCeEEEEeCCHHHHHHHHHHHhcCC--------------CCCCC
Q 019861          166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGL-FSLVVALDYSENMLKQCYEFVQQES--------------NFPKD  230 (334)
Q Consensus       166 ~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~-~~~v~giD~s~~~~~~a~~~~~~~~--------------~~~~~  230 (334)
                      ...+.+.+...++.+|||||||+|.++..+++.+. ..+|+|+|+++.+++.+++++....              ..+++
T Consensus        64 ~~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~g~~~v~~~~~d~~~~~~~~~  143 (317)
T 1dl5_A           64 MALFMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIENVIFVCGDGYYGVPEFS  143 (317)
T ss_dssp             HHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGC
T ss_pred             HHHHHHhcCCCCcCEEEEecCCchHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCCeEEEECChhhccccCC
Confidence            34555666667789999999999999999998866 3579999999999999998865321              12357


Q ss_pred             CceEEEeCccccCCCCHHHHHHHHHHcccCCcEEEEEEecc
Q 019861          231 SIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIV  271 (334)
Q Consensus       231 ~fD~V~~~~vl~h~~d~~~~L~~i~r~LkpgG~lii~~~~~  271 (334)
                      +||+|++..+++|+.      +++.+.|||||++++.....
T Consensus       144 ~fD~Iv~~~~~~~~~------~~~~~~LkpgG~lvi~~~~~  178 (317)
T 1dl5_A          144 PYDVIFVTVGVDEVP------ETWFTQLKEGGRVIVPINLK  178 (317)
T ss_dssp             CEEEEEECSBBSCCC------HHHHHHEEEEEEEEEEBCBG
T ss_pred             CeEEEEEcCCHHHHH------HHHHHhcCCCcEEEEEECCC
Confidence            899999999999987      57889999999999976543

>2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46

Probab=99.35  E-value=1.9e-12  Score=107.65  Aligned_cols=104  Identities=13%  Similarity=0.112  Sum_probs=79.0

Q ss_pred             HHHHcccC-CCCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCC----------------CCCC
Q 019861          167 ELMKGYLK-PVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES----------------NFPK  229 (334)
Q Consensus       167 ~~l~~~l~-~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~----------------~~~~  229 (334)
                      +.+...+. ..++.+|||+|||+|.++..++..+ ..+++|+|+++.+++.+++++....                +..+
T Consensus        20 ~~~~~~l~~~~~~~~vLDlGcG~G~~~~~l~~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~   98 (177)
T 2esr_A           20 GAIFNMIGPYFNGGRVLDLFAGSGGLAIEAVSRG-MSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAIDCLT   98 (177)
T ss_dssp             HHHHHHHCSCCCSCEEEEETCTTCHHHHHHHHTT-CCEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHHHBC
T ss_pred             HHHHHHHHhhcCCCeEEEeCCCCCHHHHHHHHcC-CCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcHHHhHHhhc
Confidence            34444444 3457899999999999999998874 4599999999999999998875431                1123


Q ss_pred             CCceEEEeCccccCCCCHHHHHHHHH--HcccCCcEEEEEEeccC
Q 019861          230 DSIDAVHAGAAIHCWSSPSTGVAEIS--RVLRPGGVFVGTTYIVD  272 (334)
Q Consensus       230 ~~fD~V~~~~vl~h~~d~~~~L~~i~--r~LkpgG~lii~~~~~~  272 (334)
                      +.||+|++...+++ .+...+++.+.  ++|+|||++++......
T Consensus        99 ~~fD~i~~~~~~~~-~~~~~~~~~l~~~~~L~~gG~l~~~~~~~~  142 (177)
T 2esr_A           99 GRFDLVFLDPPYAK-ETIVATIEALAAKNLLSEQVMVVCETDKTV  142 (177)
T ss_dssp             SCEEEEEECCSSHH-HHHHHHHHHHHHTTCEEEEEEEEEEEETTC
T ss_pred             CCCCEEEECCCCCc-chHHHHHHHHHhCCCcCCCcEEEEEECCcc
Confidence            67999999866532 34456777777  99999999999888754

>1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A*

Probab=99.35  E-value=2.8e-12  Score=105.90  Aligned_cols=96  Identities=20%  Similarity=0.194  Sum_probs=75.0

Q ss_pred             CCCCCcEEEECCCcCHHHHHHHHc-CCCCeEEEEeCCHHHHHHHHHHHhc-C---CC--------CCCCCceEEEeCccc
Q 019861          175 PVLGGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQQ-E---SN--------FPKDSIDAVHAGAAI  241 (334)
Q Consensus       175 ~~~~~~vLDiGcG~G~~~~~l~~~-~~~~~v~giD~s~~~~~~a~~~~~~-~---~~--------~~~~~fD~V~~~~vl  241 (334)
                      ..++.+|||+|||+|.++..+++. ++..+++|+|+++ +++..+-.+.. +   .+        +++++||+|++...+
T Consensus        20 ~~~~~~vLd~G~G~G~~~~~l~~~~~~~~~v~~~D~~~-~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~D~i~~~~~~   98 (180)
T 1ej0_A           20 FKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLP-MDPIVGVDFLQGDFRDELVMKALLERVGDSKVQVVMSDMAP   98 (180)
T ss_dssp             CCTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSC-CCCCTTEEEEESCTTSHHHHHHHHHHHTTCCEEEEEECCCC
T ss_pred             CCCCCeEEEeCCCCCHHHHHHHHHhCCCCeEEEEECcc-ccccCcEEEEEcccccchhhhhhhccCCCCceeEEEECCCc
Confidence            456789999999999999999988 5557999999998 65431100000 0   01        456789999999999


Q ss_pred             cCCCCH-----------HHHHHHHHHcccCCcEEEEEEecc
Q 019861          242 HCWSSP-----------STGVAEISRVLRPGGVFVGTTYIV  271 (334)
Q Consensus       242 ~h~~d~-----------~~~L~~i~r~LkpgG~lii~~~~~  271 (334)
                      ++..++           ..+++++.++|+|||.+++.++..
T Consensus        99 ~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~  139 (180)
T 1ej0_A           99 NMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVFQG  139 (180)
T ss_dssp             CCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEESS
T ss_pred             cccCCCccchHHHHHHHHHHHHHHHHHcCCCcEEEEEEecC
Confidence            988876           689999999999999999988764

>3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens}

Probab=99.34  E-value=2.8e-12  Score=112.09  Aligned_cols=94  Identities=18%  Similarity=0.158  Sum_probs=72.5

Q ss_pred             CCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhc--------CC-------------C--CCCCCce
Q 019861          177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQ--------ES-------------N--FPKDSID  233 (334)
Q Consensus       177 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~--------~~-------------~--~~~~~fD  233 (334)
                      ++.+|||||||+|.++..+++..+...++|+|+++.+++.|++++..        ..             +  +++++||
T Consensus        46 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~GiDis~~~l~~A~~~~~~l~~~~~~~~~nv~~~~~d~~~~l~~~~~~~~~D  125 (235)
T 3ckk_A           46 AQVEFADIGCGYGGLLVELSPLFPDTLILGLEIRVKVSDYVQDRIRALRAAPAGGFQNIACLRSNAMKHLPNFFYKGQLT  125 (235)
T ss_dssp             CCEEEEEETCTTCHHHHHHGGGSTTSEEEEEESCHHHHHHHHHHHHHHHHSTTCCCTTEEEEECCTTTCHHHHCCTTCEE
T ss_pred             CCCeEEEEccCCcHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHHHHHHhcCCCeEEEEECcHHHhhhhhCCCcCee
Confidence            45689999999999999999998778999999999999999876431        00             1  4578999


Q ss_pred             EEEeCccccCCCC--------HHHHHHHHHHcccCCcEEEEEEec
Q 019861          234 AVHAGAAIHCWSS--------PSTGVAEISRVLRPGGVFVGTTYI  270 (334)
Q Consensus       234 ~V~~~~vl~h~~d--------~~~~L~~i~r~LkpgG~lii~~~~  270 (334)
                      .|++.....+...        ...+|+++.++|+|||.+++.+..
T Consensus       126 ~v~~~~~dp~~k~~h~krr~~~~~~l~~~~~~LkpGG~l~~~td~  170 (235)
T 3ckk_A          126 KMFFLFPDPHFKRTKHKWRIISPTLLAEYAYVLRVGGLVYTITDV  170 (235)
T ss_dssp             EEEEESCC-----------CCCHHHHHHHHHHEEEEEEEEEEESC
T ss_pred             EEEEeCCCchhhhhhhhhhhhhHHHHHHHHHHCCCCCEEEEEeCC
Confidence            9987543222110        136899999999999999998765

>2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46

Probab=99.34  E-value=4.5e-12  Score=108.12  Aligned_cols=93  Identities=8%  Similarity=0.012  Sum_probs=75.4

Q ss_pred             CCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCC---------------CCCCCCceEEEeCccc
Q 019861          177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES---------------NFPKDSIDAVHAGAAI  241 (334)
Q Consensus       177 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~---------------~~~~~~fD~V~~~~vl  241 (334)
                      ++.+|||+|||+|.++..++..+. .+|+|+|+++.+++.++++.....               +..+++||+|++...+
T Consensus        54 ~~~~vLDlgcG~G~~~~~l~~~~~-~~V~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~D~~~~~~~~~~~fD~V~~~~p~  132 (202)
T 2fpo_A           54 VDAQCLDCFAGSGALGLEALSRYA-AGATLIEMDRAVSQQLIKNLATLKAGNARVVNSNAMSFLAQKGTPHNIVFVDPPF  132 (202)
T ss_dssp             TTCEEEETTCTTCHHHHHHHHTTC-SEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCHHHHHSSCCCCEEEEEECCSS
T ss_pred             CCCeEEEeCCCcCHHHHHHHhcCC-CEEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHhhcCCCCCEEEECCCC
Confidence            467999999999999998777763 489999999999999998765321               2345789999998773


Q ss_pred             cCCCCHHHHHHHHHH--cccCCcEEEEEEecc
Q 019861          242 HCWSSPSTGVAEISR--VLRPGGVFVGTTYIV  271 (334)
Q Consensus       242 ~h~~d~~~~L~~i~r--~LkpgG~lii~~~~~  271 (334)
                       |..+...+++.+.+  +|+|||++++.....
T Consensus       133 -~~~~~~~~l~~l~~~~~L~pgG~l~i~~~~~  163 (202)
T 2fpo_A          133 -RRGLLEETINLLEDNGWLADEALIYVESEVE  163 (202)
T ss_dssp             -STTTHHHHHHHHHHTTCEEEEEEEEEEEEGG
T ss_pred             -CCCcHHHHHHHHHhcCccCCCcEEEEEECCC
Confidence             45677888999876  599999999987764

>1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A*

Probab=99.34  E-value=1.9e-12  Score=115.53  Aligned_cols=90  Identities=16%  Similarity=0.258  Sum_probs=71.7

Q ss_pred             CCCcEEEECCCcCH----HHHHHHHc-CC---CCeEEEEeCCHHHHHHHHHHHh------------------------c-
Q 019861          177 LGGNIIDASCGSGL----FSRIFAKS-GL---FSLVVALDYSENMLKQCYEFVQ------------------------Q-  223 (334)
Q Consensus       177 ~~~~vLDiGcG~G~----~~~~l~~~-~~---~~~v~giD~s~~~~~~a~~~~~------------------------~-  223 (334)
                      ++.+|||+|||+|.    ++..+++. +.   ..+|+|+|+|+.+++.|++..-                        . 
T Consensus       105 ~~~rIld~GCgTGee~ysiAi~L~e~~~~~~~~~~I~atDis~~~L~~Ar~~~y~~~~~~~~~~~~~~~~f~~~~~~~~~  184 (274)
T 1af7_A          105 GEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHEG  184 (274)
T ss_dssp             SCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSCS
T ss_pred             CCcEEEEeeccCChhHHHHHHHHHHhcccCCCCeEEEEEECCHHHHHHHHhcCCchhhhhcCCHHHHHHHhhccccCCCC
Confidence            35799999999998    55556654 21   2489999999999999997530                        0 


Q ss_pred             --------------------CCCCC-CCCceEEEeCccccCCCCH--HHHHHHHHHcccCCcEEEE
Q 019861          224 --------------------ESNFP-KDSIDAVHAGAAIHCWSSP--STGVAEISRVLRPGGVFVG  266 (334)
Q Consensus       224 --------------------~~~~~-~~~fD~V~~~~vl~h~~d~--~~~L~~i~r~LkpgG~lii  266 (334)
                                          ..+++ .++||+|+|.++++|+.++  ..++++++++|+|||++++
T Consensus       185 ~~~v~~~lr~~V~F~~~dl~~~~~~~~~~fDlI~crnvliyf~~~~~~~vl~~~~~~L~pgG~L~l  250 (274)
T 1af7_A          185 LVRVRQELANYVEFSSVNLLEKQYNVPGPFDAIFCRNVMIYFDKTTQEDILRRFVPLLKPDGLLFA  250 (274)
T ss_dssp             EEEECHHHHTTEEEEECCTTCSSCCCCCCEEEEEECSSGGGSCHHHHHHHHHHHGGGEEEEEEEEE
T ss_pred             ceeechhhcccCeEEecccCCCCCCcCCCeeEEEECCchHhCCHHHHHHHHHHHHHHhCCCcEEEE
Confidence                                01243 4689999999999999866  6899999999999999988

>1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A*

Probab=99.34  E-value=3.8e-12  Score=111.04  Aligned_cols=99  Identities=15%  Similarity=0.190  Sum_probs=80.3

Q ss_pred             HHHHcccCCCCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCC-------------CCCC-CCc
Q 019861          167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES-------------NFPK-DSI  232 (334)
Q Consensus       167 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~-------------~~~~-~~f  232 (334)
                      ..+.+.+...++.+|||||||+|.++..+++.++ .+|+++|+++.+++.+++++....             ++++ ..|
T Consensus        81 ~~~~~~l~~~~~~~vLdiG~G~G~~~~~la~~~~-~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~f  159 (235)
T 1jg1_A           81 AIMLEIANLKPGMNILEVGTGSGWNAALISEIVK-TDVYTIERIPELVEFAKRNLERAGVKNVHVILGDGSKGFPPKAPY  159 (235)
T ss_dssp             HHHHHHHTCCTTCCEEEECCTTSHHHHHHHHHHC-SCEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGCCE
T ss_pred             HHHHHhcCCCCCCEEEEEeCCcCHHHHHHHHHhC-CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEECCcccCCCCCCCc
Confidence            3445555666788999999999999999999874 599999999999999998765321             2333 359


Q ss_pred             eEEEeCccccCCCCHHHHHHHHHHcccCCcEEEEEEeccC
Q 019861          233 DAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVD  272 (334)
Q Consensus       233 D~V~~~~vl~h~~d~~~~L~~i~r~LkpgG~lii~~~~~~  272 (334)
                      |+|++..+++++.+      ++.+.|+|||++++..+...
T Consensus       160 D~Ii~~~~~~~~~~------~~~~~L~pgG~lvi~~~~~~  193 (235)
T 1jg1_A          160 DVIIVTAGAPKIPE------PLIEQLKIGGKLIIPVGSYH  193 (235)
T ss_dssp             EEEEECSBBSSCCH------HHHHTEEEEEEEEEEECSSS
T ss_pred             cEEEECCcHHHHHH------HHHHhcCCCcEEEEEEecCC
Confidence            99999999998863      68899999999999888653

>2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46

Probab=99.34  E-value=2.5e-12  Score=109.70  Aligned_cols=93  Identities=15%  Similarity=0.160  Sum_probs=75.0

Q ss_pred             CCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCC-----------------C-CCCCC-ceEEEe
Q 019861          177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES-----------------N-FPKDS-IDAVHA  237 (334)
Q Consensus       177 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~-----------------~-~~~~~-fD~V~~  237 (334)
                      ++.+|||+|||+|.++..++..+. .+|+|+|+|+.+++.|++++....                 + +++++ ||+|++
T Consensus        53 ~~~~vLDlGcGtG~~~~~~~~~~~-~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~  131 (201)
T 2ift_A           53 HQSECLDGFAGSGSLGFEALSRQA-KKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFLKQPQNQPHFDVVFL  131 (201)
T ss_dssp             TTCEEEETTCTTCHHHHHHHHTTC-SEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHTTSCCSSCCEEEEEE
T ss_pred             CCCeEEEcCCccCHHHHHHHHccC-CEEEEEECCHHHHHHHHHHHHHhCCCccceEEEECCHHHHHHhhccCCCCCEEEE
Confidence            467999999999999998777763 589999999999999998764211                 1 12567 999999


Q ss_pred             CccccCCCCHHHHHHHH--HHcccCCcEEEEEEecc
Q 019861          238 GAAIHCWSSPSTGVAEI--SRVLRPGGVFVGTTYIV  271 (334)
Q Consensus       238 ~~vl~h~~d~~~~L~~i--~r~LkpgG~lii~~~~~  271 (334)
                      ...++ ..+...+++.+  .++|+|||.+++.....
T Consensus       132 ~~~~~-~~~~~~~l~~~~~~~~LkpgG~l~i~~~~~  166 (201)
T 2ift_A          132 DPPFH-FNLAEQAISLLCENNWLKPNALIYVETEKD  166 (201)
T ss_dssp             CCCSS-SCHHHHHHHHHHHTTCEEEEEEEEEEEESS
T ss_pred             CCCCC-CccHHHHHHHHHhcCccCCCcEEEEEECCC
Confidence            88743 56777889999  67899999999987764

>3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ...

Probab=99.33  E-value=1.7e-12  Score=112.28  Aligned_cols=103  Identities=12%  Similarity=0.149  Sum_probs=79.6

Q ss_pred             HHHcccCCCCCCcEEEECCCcCHHHHHHHHcC-CCCeEEEEeCCHHHHHHHHHHHhcCC-----------------CCC-
Q 019861          168 LMKGYLKPVLGGNIIDASCGSGLFSRIFAKSG-LFSLVVALDYSENMLKQCYEFVQQES-----------------NFP-  228 (334)
Q Consensus       168 ~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~~v~giD~s~~~~~~a~~~~~~~~-----------------~~~-  228 (334)
                      .+...+...++.+|||||||+|..+..+++.. +..+|+++|+++.+++.|++++....                 .+. 
T Consensus        49 ~l~~l~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~  128 (221)
T 3u81_A           49 IMDAVIREYSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEINPDCAAITQQMLNFAGLQDKVTILNGASQDLIPQLKK  128 (221)
T ss_dssp             HHHHHHHHHCCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHGGGTTT
T ss_pred             HHHHHHHhcCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHcCCCCceEEEECCHHHHHHHHHH
Confidence            33333333456899999999999999999863 35699999999999999998754311                 112 


Q ss_pred             ---CCCceEEEeCccccCCCCHHHHHHHHHHcccCCcEEEEEEecc
Q 019861          229 ---KDSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIV  271 (334)
Q Consensus       229 ---~~~fD~V~~~~vl~h~~d~~~~L~~i~r~LkpgG~lii~~~~~  271 (334)
                         .++||+|++....++..+...++..+ ++|+|||++++.+...
T Consensus       129 ~~~~~~fD~V~~d~~~~~~~~~~~~~~~~-~~LkpgG~lv~~~~~~  173 (221)
T 3u81_A          129 KYDVDTLDMVFLDHWKDRYLPDTLLLEKC-GLLRKGTVLLADNVIV  173 (221)
T ss_dssp             TSCCCCCSEEEECSCGGGHHHHHHHHHHT-TCCCTTCEEEESCCCC
T ss_pred             hcCCCceEEEEEcCCcccchHHHHHHHhc-cccCCCeEEEEeCCCC
Confidence               26899999999888877777778888 9999999999865543

>3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str}

Probab=99.32  E-value=1.2e-11  Score=107.97  Aligned_cols=134  Identities=11%  Similarity=0.096  Sum_probs=99.4

Q ss_pred             HHHHHcccCCCCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCC--------------CCCCC-
Q 019861          166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES--------------NFPKD-  230 (334)
Q Consensus       166 ~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~--------------~~~~~-  230 (334)
                      .+.+..++.+  +.+|||||||+|.++..++..++...|+++|+++.+++.|++++...+              .+..+ 
T Consensus        12 L~~i~~~v~~--g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl~~~I~v~~gD~l~~~~~~~   89 (244)
T 3gnl_A           12 LEKVASYITK--NERIADIGSDHAYLPCFAVKNQTASFAIAGEVVDGPFQSAQKQVRSSGLTEQIDVRKGNGLAVIEKKD   89 (244)
T ss_dssp             HHHHHTTCCS--SEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGGG
T ss_pred             HHHHHHhCCC--CCEEEEECCccHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEecchhhccCccc
Confidence            4466677665  689999999999999999999876689999999999999999876432              12233 


Q ss_pred             CceEEEeCccccCCCCHHHHHHHHHHcccCCcEEEEEEeccCCCCCchHHHHHHHHHhhhhcCccCCCCHHHHHHHHHhC
Q 019861          231 SIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLCRAC  310 (334)
Q Consensus       231 ~fD~V~~~~vl~h~~d~~~~L~~i~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~l~~ll~~~  310 (334)
                      .||+|+.....-.  -...+|.+..+.|+++|++++....                            ..+.++++|.+.
T Consensus        90 ~~D~IviagmGg~--lI~~IL~~~~~~L~~~~~lIlq~~~----------------------------~~~~lr~~L~~~  139 (244)
T 3gnl_A           90 AIDTIVIAGMGGT--LIRTILEEGAAKLAGVTKLILQPNI----------------------------AAWQLREWSEQN  139 (244)
T ss_dssp             CCCEEEEEEECHH--HHHHHHHHTGGGGTTCCEEEEEESS----------------------------CHHHHHHHHHHH
T ss_pred             cccEEEEeCCchH--HHHHHHHHHHHHhCCCCEEEEEcCC----------------------------ChHHHHHHHHHC
Confidence            5999886543221  1345788999999999998885431                            366899999999


Q ss_pred             CCcEEEEe---ecC-cEEEEEEEcC
Q 019861          311 GLVDFKCT---RNR-GFVMFTATKP  331 (334)
Q Consensus       311 Gf~~v~~~---~~g-~~~~~~a~K~  331 (334)
                      ||.+++..   ..+ .|-++.+.+.
T Consensus       140 Gf~i~~E~lv~e~~k~Yeii~~~~~  164 (244)
T 3gnl_A          140 NWLITSEAILREDNKVYEIMVLAPS  164 (244)
T ss_dssp             TEEEEEEEEEEETTEEEEEEEEEEC
T ss_pred             CCEEEEEEEEEECCEEEEEEEEEeC
Confidence            99987733   344 4445555543

>3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp}

Probab=99.32  E-value=2.2e-11  Score=107.18  Aligned_cols=95  Identities=14%  Similarity=0.133  Sum_probs=76.1

Q ss_pred             CCCCCCcEEEECCCcCHHHHHHHHcCC-CCeEEEEeCCHHHHHHHHHHHhcCC-----------------CC-CCCCceE
Q 019861          174 KPVLGGNIIDASCGSGLFSRIFAKSGL-FSLVVALDYSENMLKQCYEFVQQES-----------------NF-PKDSIDA  234 (334)
Q Consensus       174 ~~~~~~~vLDiGcG~G~~~~~l~~~~~-~~~v~giD~s~~~~~~a~~~~~~~~-----------------~~-~~~~fD~  234 (334)
                      ...++.+|||||||+|..+..+++..+ ..+|+++|+++.+++.|++++....                 .+ ..++||+
T Consensus        60 ~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~l~~~~~~~~fD~  139 (248)
T 3tfw_A           60 RLTQAKRILEIGTLGGYSTIWMARELPADGQLLTLEADAHHAQVARENLQLAGVDQRVTLREGPALQSLESLGECPAFDL  139 (248)
T ss_dssp             HHHTCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHTCCSCCCCSE
T ss_pred             hhcCCCEEEEecCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHhcCCCCCeEE
Confidence            334578999999999999999999855 5799999999999999998875321                 11 1348999


Q ss_pred             EEeCccccCCCCHHHHHHHHHHcccCCcEEEEEEecc
Q 019861          235 VHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIV  271 (334)
Q Consensus       235 V~~~~vl~h~~d~~~~L~~i~r~LkpgG~lii~~~~~  271 (334)
                      |++...   ..+...+++++.++|+|||++++.....
T Consensus       140 V~~d~~---~~~~~~~l~~~~~~LkpGG~lv~~~~~~  173 (248)
T 3tfw_A          140 IFIDAD---KPNNPHYLRWALRYSRPGTLIIGDNVVR  173 (248)
T ss_dssp             EEECSC---GGGHHHHHHHHHHTCCTTCEEEEECCSG
T ss_pred             EEECCc---hHHHHHHHHHHHHhcCCCeEEEEeCCCc
Confidence            998763   3355678999999999999999876654

>2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str}

Probab=99.32  E-value=3.6e-11  Score=106.62  Aligned_cols=102  Identities=14%  Similarity=0.101  Sum_probs=79.5

Q ss_pred             HHHcccCCCCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhc---CC-------------C-----
Q 019861          168 LMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQ---ES-------------N-----  226 (334)
Q Consensus       168 ~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~---~~-------------~-----  226 (334)
                      .+..++...++.+|||+|||+|.++..++..++..+++|+|+++.+++.|++++..   ..             .     
T Consensus        27 lL~~~~~~~~~~~VLDlG~G~G~~~l~la~~~~~~~v~gvDi~~~~~~~a~~n~~~~~~~~l~~~v~~~~~D~~~~~~~~  106 (260)
T 2ozv_A           27 LLASLVADDRACRIADLGAGAGAAGMAVAARLEKAEVTLYERSQEMAEFARRSLELPDNAAFSARIEVLEADVTLRAKAR  106 (260)
T ss_dssp             HHHHTCCCCSCEEEEECCSSSSHHHHHHHHHCTTEEEEEEESSHHHHHHHHHHTTSGGGTTTGGGEEEEECCTTCCHHHH
T ss_pred             HHHHHhcccCCCEEEEeCChHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHhhhhCCCcceEEEEeCCHHHHhhhh
Confidence            34455555667899999999999999999998767999999999999999998654   21             1     


Q ss_pred             ----CCCCCceEEEeCcccc----------------C--CCCHHHHHHHHHHcccCCcEEEEEEe
Q 019861          227 ----FPKDSIDAVHAGAAIH----------------C--WSSPSTGVAEISRVLRPGGVFVGTTY  269 (334)
Q Consensus       227 ----~~~~~fD~V~~~~vl~----------------h--~~d~~~~L~~i~r~LkpgG~lii~~~  269 (334)
                          +++++||+|+++--..                |  ..+...+++.+.++|+|||++++..+
T Consensus       107 ~~~~~~~~~fD~Vv~nPPy~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  171 (260)
T 2ozv_A          107 VEAGLPDEHFHHVIMNPPYNDAGDRRTPDALKAEAHAMTEGLFEDWIRTASAIMVSGGQLSLISR  171 (260)
T ss_dssp             HHTTCCTTCEEEEEECCCC---------------------CCHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred             hhhccCCCCcCEEEECCCCcCCCCCCCcCHHHHHHhhcCcCCHHHHHHHHHHHcCCCCEEEEEEc
Confidence                2467899999972211                1  12467889999999999999998654

>3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A*

Probab=99.32  E-value=2.3e-12  Score=119.75  Aligned_cols=108  Identities=10%  Similarity=0.057  Sum_probs=83.6

Q ss_pred             HHHHHHHcccCCCCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHh---------cC--C-------
Q 019861          164 KEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQ---------QE--S-------  225 (334)
Q Consensus       164 ~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~---------~~--~-------  225 (334)
                      .....+...+...++.+|||||||+|.++..++...+..+++|+|+++.+++.|+++..         +.  .       
T Consensus       160 ~~i~~il~~l~l~~gd~VLDLGCGtG~l~l~lA~~~g~~kVvGIDiS~~~lelAr~n~e~frkr~~~~Gl~~~rVefi~G  239 (438)
T 3uwp_A          160 DLVAQMIDEIKMTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERG  239 (438)
T ss_dssp             HHHHHHHHHHCCCTTCEEEEESCTTSHHHHHHHHHCCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHHTBCCCEEEEEEC
T ss_pred             HHHHHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEEEC
Confidence            34555666677778999999999999999999876544469999999999999886431         10  1       


Q ss_pred             C-----CCC--CCceEEEeCccccCCCCHHHHHHHHHHcccCCcEEEEEEeccC
Q 019861          226 N-----FPK--DSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVD  272 (334)
Q Consensus       226 ~-----~~~--~~fD~V~~~~vl~h~~d~~~~L~~i~r~LkpgG~lii~~~~~~  272 (334)
                      .     +++  ..||+|+++..+ +.++....|.++.++|||||+|++.+....
T Consensus       240 D~~~lp~~d~~~~aDVVf~Nn~~-F~pdl~~aL~Ei~RvLKPGGrIVssE~f~p  292 (438)
T 3uwp_A          240 DFLSEEWRERIANTSVIFVNNFA-FGPEVDHQLKERFANMKEGGRIVSSKPFAP  292 (438)
T ss_dssp             CTTSHHHHHHHHTCSEEEECCTT-CCHHHHHHHHHHHTTSCTTCEEEESSCSSC
T ss_pred             cccCCccccccCCccEEEEcccc-cCchHHHHHHHHHHcCCCCcEEEEeecccC
Confidence            1     111  479999998765 457888999999999999999999876653

>1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31

Probab=99.32  E-value=5.9e-12  Score=118.92  Aligned_cols=107  Identities=10%  Similarity=0.023  Sum_probs=83.3

Q ss_pred             HHHHHHHcccCCCCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHH-------HHHHhcCC-----------
Q 019861          164 KEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQC-------YEFVQQES-----------  225 (334)
Q Consensus       164 ~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a-------~~~~~~~~-----------  225 (334)
                      .....+.+.+...++.+|||||||+|.++..++...+..+|+|+|+++.+++.|       ++++...+           
T Consensus       229 ~~v~~ml~~l~l~~g~~VLDLGCGsG~la~~LA~~~g~~~V~GVDis~~~l~~A~~Ml~~ar~~~~~~Gl~~~nV~~i~g  308 (433)
T 1u2z_A          229 NFLSDVYQQCQLKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSLK  308 (433)
T ss_dssp             HHHHHHHHHTTCCTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEES
T ss_pred             HHHHHHHHhcCCCCCCEEEEeCCCcCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHhHHHHHHHHHHcCCCCCceEEEEc
Confidence            344556666677778999999999999999999875445899999999998888       66543211           


Q ss_pred             -CC--------CCCCceEEEeCccccCCCCHHHHHHHHHHcccCCcEEEEEEecc
Q 019861          226 -NF--------PKDSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIV  271 (334)
Q Consensus       226 -~~--------~~~~fD~V~~~~vl~h~~d~~~~L~~i~r~LkpgG~lii~~~~~  271 (334)
                       .+        ..++||+|+++.++ +.+++..+|+++.++|||||++++..+..
T Consensus       309 D~~~~~~~~~~~~~~FDvIvvn~~l-~~~d~~~~L~el~r~LKpGG~lVi~d~f~  362 (433)
T 1u2z_A          309 KSFVDNNRVAELIPQCDVILVNNFL-FDEDLNKKVEKILQTAKVGCKIISLKSLR  362 (433)
T ss_dssp             SCSTTCHHHHHHGGGCSEEEECCTT-CCHHHHHHHHHHHTTCCTTCEEEESSCSS
T ss_pred             CccccccccccccCCCCEEEEeCcc-ccccHHHHHHHHHHhCCCCeEEEEeeccC
Confidence             12        13679999998776 44677889999999999999999976544

>3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus}

Probab=99.32  E-value=1.3e-11  Score=107.48  Aligned_cols=103  Identities=17%  Similarity=0.189  Sum_probs=80.4

Q ss_pred             HHHHHcccCCCCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCC--------------CCC---
Q 019861          166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES--------------NFP---  228 (334)
Q Consensus       166 ~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~--------------~~~---  228 (334)
                      ...+...+...++.+|||||||+|..+..++...+..+|+++|+++.+++.|++++....              ..+   
T Consensus        60 ~~~l~~~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~  139 (232)
T 3ntv_A           60 LDLIKQLIRMNNVKNILEIGTAIGYSSMQFASISDDIHVTTIERNETMIQYAKQNLATYHFENQVRIIEGNALEQFENVN  139 (232)
T ss_dssp             HHHHHHHHHHHTCCEEEEECCSSSHHHHHHHTTCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCHHHHT
T ss_pred             HHHHHHHHhhcCCCEEEEEeCchhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhhc
Confidence            334444444445789999999999999999997667799999999999999998865321              122   


Q ss_pred             CCCceEEEeCccccCCCCHHHHHHHHHHcccCCcEEEEEEecc
Q 019861          229 KDSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIV  271 (334)
Q Consensus       229 ~~~fD~V~~~~vl~h~~d~~~~L~~i~r~LkpgG~lii~~~~~  271 (334)
                      +++||+|++...   ..+...+++++.++|+|||++++.....
T Consensus       140 ~~~fD~V~~~~~---~~~~~~~l~~~~~~LkpgG~lv~d~~~~  179 (232)
T 3ntv_A          140 DKVYDMIFIDAA---KAQSKKFFEIYTPLLKHQGLVITDNVLY  179 (232)
T ss_dssp             TSCEEEEEEETT---SSSHHHHHHHHGGGEEEEEEEEEECTTG
T ss_pred             cCCccEEEEcCc---HHHHHHHHHHHHHhcCCCeEEEEeeCCc
Confidence            578999997654   4456789999999999999998855544

>3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana}

Probab=99.31  E-value=7.9e-12  Score=116.85  Aligned_cols=101  Identities=19%  Similarity=0.263  Sum_probs=80.0

Q ss_pred             HHHHcccCCCCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCC---------------CCCCCC
Q 019861          167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES---------------NFPKDS  231 (334)
Q Consensus       167 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~---------------~~~~~~  231 (334)
                      +.+.......++.+|||||||+|.++..+++.+. .+|+|+|++ .+++.|++++....               +++ ++
T Consensus        53 ~~i~~~~~~~~~~~VLDlGcGtG~ls~~la~~g~-~~V~gvD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~-~~  129 (376)
T 3r0q_C           53 NAVFQNKHHFEGKTVLDVGTGSGILAIWSAQAGA-RKVYAVEAT-KMADHARALVKANNLDHIVEVIEGSVEDISLP-EK  129 (376)
T ss_dssp             HHHHTTTTTTTTCEEEEESCTTTHHHHHHHHTTC-SEEEEEESS-TTHHHHHHHHHHTTCTTTEEEEESCGGGCCCS-SC
T ss_pred             HHHHhccccCCCCEEEEeccCcCHHHHHHHhcCC-CEEEEEccH-HHHHHHHHHHHHcCCCCeEEEEECchhhcCcC-Cc
Confidence            4455555566788999999999999999999863 599999999 99999998765321               233 78


Q ss_pred             ceEEEeCccccCC---CCHHHHHHHHHHcccCCcEEEEEEec
Q 019861          232 IDAVHAGAAIHCW---SSPSTGVAEISRVLRPGGVFVGTTYI  270 (334)
Q Consensus       232 fD~V~~~~vl~h~---~d~~~~L~~i~r~LkpgG~lii~~~~  270 (334)
                      ||+|++..+.+++   .++..+++++.++|+|||++++....
T Consensus       130 ~D~Iv~~~~~~~l~~e~~~~~~l~~~~~~LkpgG~li~~~~~  171 (376)
T 3r0q_C          130 VDVIISEWMGYFLLRESMFDSVISARDRWLKPTGVMYPSHAR  171 (376)
T ss_dssp             EEEEEECCCBTTBTTTCTHHHHHHHHHHHEEEEEEEESSEEE
T ss_pred             ceEEEEcChhhcccchHHHHHHHHHHHhhCCCCeEEEEecCe
Confidence            9999996644444   56788999999999999999875543

>2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54

Probab=99.30  E-value=1.4e-12  Score=115.06  Aligned_cols=131  Identities=13%  Similarity=0.045  Sum_probs=84.4

Q ss_pred             CCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCC------------------CCC---CCCceEE
Q 019861          177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES------------------NFP---KDSIDAV  235 (334)
Q Consensus       177 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~------------------~~~---~~~fD~V  235 (334)
                      ++.+|||+|||+|.++..++...+..+++|+|+++.+++.|+++.....                  +++   +++||+|
T Consensus        65 ~~~~vLDlG~G~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD~i  144 (254)
T 2h00_A           65 TLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQKTLLMDALKEESEIIYDFC  144 (254)
T ss_dssp             CCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTCSSTTTSTTCCSCCBSEE
T ss_pred             CCCEEEEeCCChhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHcCCCccEEEEEcchhhhhhhhhhcccCCcccEE
Confidence            4679999999999999888877444699999999999999998764211                  233   2589999


Q ss_pred             EeCccccCCC--------------CH-HHHHHHHHHcccCCcEEEEEEeccCCCCCchHHHHHHHHHhhhh----cCccC
Q 019861          236 HAGAAIHCWS--------------SP-STGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQI----SGSYT  296 (334)
Q Consensus       236 ~~~~vl~h~~--------------d~-~~~L~~i~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~  296 (334)
                      +++-..++..              .| ..++.+++++|||||.+.+....          ...........    ..+..
T Consensus       145 ~~npp~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~LkpgG~l~~~~~~----------~~~~~~~l~~~g~~~~~~~~  214 (254)
T 2h00_A          145 MCNPPFFANQLEAKGVNSRNPRRPPPSSVNTGGITEIMAEGGELEFVKRI----------IHDSLQLKKRLRWYSCMLGK  214 (254)
T ss_dssp             EECCCCC-------------------------CTTTTHHHHTHHHHHHHH----------HHHHHHHGGGBSCEEEEESS
T ss_pred             EECCCCccCcchhcccccccccccCCHHHHhhhHHHHEecCCEEEEEHHH----------HHHHHhcccceEEEEECCCC
Confidence            9984443322              11 24578899999999987664321          11111111110    11222


Q ss_pred             CCCHHHHHHHHHhCCCcEEEE
Q 019861          297 FLSEREIEDLCRACGLVDFKC  317 (334)
Q Consensus       297 ~~t~~~l~~ll~~~Gf~~v~~  317 (334)
                      ..+.+++.++++++||+.++.
T Consensus       215 ~~~~~~~~~~l~~~Gf~~v~~  235 (254)
T 2h00_A          215 KCSLAPLKEELRIQGVPKVTY  235 (254)
T ss_dssp             TTSHHHHHHHHHHTTCSEEEE
T ss_pred             hhHHHHHHHHHHHcCCCceEE
Confidence            334588999999999988763

>3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A*

Probab=99.29  E-value=4.1e-11  Score=103.40  Aligned_cols=102  Identities=16%  Similarity=0.161  Sum_probs=78.5

Q ss_pred             HHHHcccCCCCCCcEEEECCCcCHHHHHHHHcCC-CCeEEEEeCCHHHHHHHHHHHhcCCC-----------------CC
Q 019861          167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGL-FSLVVALDYSENMLKQCYEFVQQESN-----------------FP  228 (334)
Q Consensus       167 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~-~~~v~giD~s~~~~~~a~~~~~~~~~-----------------~~  228 (334)
                      ..+...+...++.+|||||||+|..+..+++..+ ..+++++|+++.+++.+++++.....                 ++
T Consensus        48 ~~l~~l~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~  127 (223)
T 3duw_A           48 KFLQLLVQIQGARNILEIGTLGGYSTIWLARGLSSGGRVVTLEASEKHADIARSNIERANLNDRVEVRTGLALDSLQQIE  127 (223)
T ss_dssp             HHHHHHHHHHTCSEEEEECCTTSHHHHHHHTTCCSSCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHH
T ss_pred             HHHHHHHHhhCCCEEEEecCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHH
Confidence            3333333334578999999999999999999855 56999999999999999988753220                 00


Q ss_pred             ---CCCceEEEeCccccCCCCHHHHHHHHHHcccCCcEEEEEEecc
Q 019861          229 ---KDSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIV  271 (334)
Q Consensus       229 ---~~~fD~V~~~~vl~h~~d~~~~L~~i~r~LkpgG~lii~~~~~  271 (334)
                         .++||+|++.....   +...+++++.++|+|||++++.....
T Consensus       128 ~~~~~~fD~v~~d~~~~---~~~~~l~~~~~~L~pgG~lv~~~~~~  170 (223)
T 3duw_A          128 NEKYEPFDFIFIDADKQ---NNPAYFEWALKLSRPGTVIIGDNVVR  170 (223)
T ss_dssp             HTTCCCCSEEEECSCGG---GHHHHHHHHHHTCCTTCEEEEESCSG
T ss_pred             hcCCCCcCEEEEcCCcH---HHHHHHHHHHHhcCCCcEEEEeCCCc
Confidence               16799999876633   45688999999999999998876654

>1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A

Probab=99.29  E-value=1.3e-11  Score=108.68  Aligned_cols=103  Identities=15%  Similarity=0.057  Sum_probs=75.8

Q ss_pred             HHHcccCCCCCCcEEEECCCcCHHHHHHHHc--CCCCeEEEEeCCHHHHHHHHHHHhcC---------------------
Q 019861          168 LMKGYLKPVLGGNIIDASCGSGLFSRIFAKS--GLFSLVVALDYSENMLKQCYEFVQQE---------------------  224 (334)
Q Consensus       168 ~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~--~~~~~v~giD~s~~~~~~a~~~~~~~---------------------  224 (334)
                      .+...+...++.+|||+|||+|.++..++..  .+..+++|+|+|+.+++.|++++...                     
T Consensus        42 ~~l~~~~~~~~~~vLD~gcGsG~~~~~la~~~~~~~~~v~gvDis~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~  121 (250)
T 1o9g_A           42 RALARLPGDGPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAGLTARELERREQSERFGK  121 (250)
T ss_dssp             HHHHTSSCCSCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHCC
T ss_pred             HHHHhcccCCCCeEEECCCCCCHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHHHhhhccccccchhhhhhhhhccc
Confidence            3344444345679999999999999999887  44458999999999999998543211                     


Q ss_pred             ----------------------------------CCC------CCCCceEEEeCccccCCCC---------HHHHHHHHH
Q 019861          225 ----------------------------------SNF------PKDSIDAVHAGAAIHCWSS---------PSTGVAEIS  255 (334)
Q Consensus       225 ----------------------------------~~~------~~~~fD~V~~~~vl~h~~d---------~~~~L~~i~  255 (334)
                                                        ...      ..++||+|+++..+.+..+         ...+++++.
T Consensus       122 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~fD~Iv~npp~~~~~~~~~~~~~~~~~~~l~~~~  201 (250)
T 1o9g_A          122 PSYLEAAQAARRLRERLTAEGGALPCAIRTADVFDPRALSAVLAGSAPDVVLTDLPYGERTHWEGQVPGQPVAGLLRSLA  201 (250)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTSSCCEEEEECCTTCGGGHHHHHTTCCCSEEEEECCGGGSSSSSSCCCHHHHHHHHHHHH
T ss_pred             ccchhhhhhhhhhhhhccccccccccceeecccccccccccccCCCCceEEEeCCCeeccccccccccccHHHHHHHHHH
Confidence                                              012      2348999999866554433         348999999


Q ss_pred             HcccCCcEEEEEEec
Q 019861          256 RVLRPGGVFVGTTYI  270 (334)
Q Consensus       256 r~LkpgG~lii~~~~  270 (334)
                      ++|+|||++++....
T Consensus       202 ~~LkpgG~l~~~~~~  216 (250)
T 1o9g_A          202 SALPAHAVIAVTDRS  216 (250)
T ss_dssp             HHSCTTCEEEEEESS
T ss_pred             HhcCCCcEEEEeCcc
Confidence            999999999994443

>1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38

Probab=99.28  E-value=1.9e-11  Score=111.58  Aligned_cols=104  Identities=20%  Similarity=0.179  Sum_probs=77.8

Q ss_pred             HHHcccCCCCCCcEEEECCCcCHHHHHHHHcC-CCCeEEEEeCCHHHHHHHHHHHhcCC--------------CCCCCCc
Q 019861          168 LMKGYLKPVLGGNIIDASCGSGLFSRIFAKSG-LFSLVVALDYSENMLKQCYEFVQQES--------------NFPKDSI  232 (334)
Q Consensus       168 ~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~~v~giD~s~~~~~~a~~~~~~~~--------------~~~~~~f  232 (334)
                      .+...+...++.+|||+|||+|..+..+++.. ....++|+|+++.+++.+++++...+              +..+++|
T Consensus       109 l~~~~l~~~~g~~VLDlg~G~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~~~~~~g~~~v~~~~~D~~~~~~~~~~f  188 (315)
T 1ixk_A          109 YPPVALDPKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVLNVILFHSSSLHIGELNVEF  188 (315)
T ss_dssp             HHHHHHCCCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCCSEEEESSCGGGGGGGCCCE
T ss_pred             HHHHHhCCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHHhCCCeEEEEECChhhcccccccC
Confidence            34455566778899999999999999999874 34699999999999999998864321              1124689


Q ss_pred             eEEEeC------ccccCCCCH----------------HHHHHHHHHcccCCcEEEEEEecc
Q 019861          233 DAVHAG------AAIHCWSSP----------------STGVAEISRVLRPGGVFVGTTYIV  271 (334)
Q Consensus       233 D~V~~~------~vl~h~~d~----------------~~~L~~i~r~LkpgG~lii~~~~~  271 (334)
                      |+|++.      .++.+.++.                ..+|+++.++|||||++++++-..
T Consensus       189 D~Il~d~Pcsg~g~~~~~p~~~~~~~~~~~~~~~~~q~~~L~~~~~~LkpGG~lv~stcs~  249 (315)
T 1ixk_A          189 DKILLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTCSL  249 (315)
T ss_dssp             EEEEEECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCC
T ss_pred             CEEEEeCCCCCcccccCChhHhhcCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCCC
Confidence            999983      334443321                478999999999999999987654

>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum}

Probab=99.28  E-value=2.1e-11  Score=105.48  Aligned_cols=103  Identities=14%  Similarity=0.119  Sum_probs=78.8

Q ss_pred             HHHHHcccCCCCCCcEEEECCCcCHHHHHHHHcC-CCCeEEEEeCCHHHHHHHHHHHhcCC------------------C
Q 019861          166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSG-LFSLVVALDYSENMLKQCYEFVQQES------------------N  226 (334)
Q Consensus       166 ~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~~v~giD~s~~~~~~a~~~~~~~~------------------~  226 (334)
                      ...+....+..++.+|||||||+|..+..+++.. +..+++++|+++.+++.|++++...+                  .
T Consensus        45 l~~l~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~~i~~~~gda~~~l~~  124 (221)
T 3dr5_A           45 LTTLAATTNGNGSTGAIAITPAAGLVGLYILNGLADNTTLTCIDPESEHQRQAKALFREAGYSPSRVRFLLSRPLDVMSR  124 (221)
T ss_dssp             HHHHHHHSCCTTCCEEEEESTTHHHHHHHHHHHSCTTSEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHGGG
T ss_pred             HHHHHHhhCCCCCCCEEEEcCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCcCcEEEEEcCHHHHHHH
Confidence            3344444444445599999999999999999864 36799999999999999998875321                  1


Q ss_pred             CCCCCceEEEeCccccCCCCHHHHHHHHHHcccCCcEEEEEEecc
Q 019861          227 FPKDSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIV  271 (334)
Q Consensus       227 ~~~~~fD~V~~~~vl~h~~d~~~~L~~i~r~LkpgG~lii~~~~~  271 (334)
                      +++++||+|++....   .+...+++++.++|+|||++++.....
T Consensus       125 ~~~~~fD~V~~d~~~---~~~~~~l~~~~~~LkpGG~lv~dn~~~  166 (221)
T 3dr5_A          125 LANDSYQLVFGQVSP---MDLKALVDAAWPLLRRGGALVLADALL  166 (221)
T ss_dssp             SCTTCEEEEEECCCT---TTHHHHHHHHHHHEEEEEEEEETTTTG
T ss_pred             hcCCCcCeEEEcCcH---HHHHHHHHHHHHHcCCCcEEEEeCCCC
Confidence            336789999987643   356678999999999999999854443

>2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans}

Probab=99.28  E-value=2.5e-11  Score=105.62  Aligned_cols=105  Identities=16%  Similarity=0.157  Sum_probs=82.5

Q ss_pred             HHHHHHHcccCCCCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCC----------------CC
Q 019861          164 KEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES----------------NF  227 (334)
Q Consensus       164 ~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~----------------~~  227 (334)
                      .....+...+...++.+|||||||+|.++..+++..+..+++++|+++.+++.|++++....                +.
T Consensus        41 ~~~~~l~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~  120 (233)
T 2gpy_A           41 LGMESLLHLLKMAAPARILEIGTAIGYSAIRMAQALPEATIVSIERDERRYEEAHKHVKALGLESRIELLFGDALQLGEK  120 (233)
T ss_dssp             HHHHHHHHHHHHHCCSEEEEECCTTSHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCGGGSHHH
T ss_pred             HHHHHHHHHHhccCCCEEEEecCCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHh
Confidence            33444445444456789999999999999999998766799999999999999998865321                01


Q ss_pred             C--CCCceEEEeCccccCCCCHHHHHHHHHHcccCCcEEEEEEecc
Q 019861          228 P--KDSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIV  271 (334)
Q Consensus       228 ~--~~~fD~V~~~~vl~h~~d~~~~L~~i~r~LkpgG~lii~~~~~  271 (334)
                      .  +++||+|++....+   +...+++++.++|+|||++++.+...
T Consensus       121 ~~~~~~fD~I~~~~~~~---~~~~~l~~~~~~L~pgG~lv~~~~~~  163 (233)
T 2gpy_A          121 LELYPLFDVLFIDAAKG---QYRRFFDMYSPMVRPGGLILSDNVLF  163 (233)
T ss_dssp             HTTSCCEEEEEEEGGGS---CHHHHHHHHGGGEEEEEEEEEETTTC
T ss_pred             cccCCCccEEEECCCHH---HHHHHHHHHHHHcCCCeEEEEEcCCc
Confidence            1  46899999987754   77889999999999999999975543

>2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus}

Probab=99.28  E-value=3e-11  Score=105.79  Aligned_cols=98  Identities=12%  Similarity=0.076  Sum_probs=81.3

Q ss_pred             HHHHHcccCCCCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCC--------------CC-CCC
Q 019861          166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES--------------NF-PKD  230 (334)
Q Consensus       166 ~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~--------------~~-~~~  230 (334)
                      ...+...+...++.+|||+|||+|.++..+++.+  .+++++|+++.+++.++++.....              .+ +++
T Consensus        80 ~~~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~  157 (248)
T 2yvl_A           80 SFYIALKLNLNKEKRVLEFGTGSGALLAVLSEVA--GEVWTFEAVEEFYKTAQKNLKKFNLGKNVKFFNVDFKDAEVPEG  157 (248)
T ss_dssp             HHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHS--SEEEEECSCHHHHHHHHHHHHHTTCCTTEEEECSCTTTSCCCTT
T ss_pred             HHHHHHhcCCCCCCEEEEeCCCccHHHHHHHHhC--CEEEEEecCHHHHHHHHHHHHHcCCCCcEEEEEcChhhcccCCC
Confidence            3466666676778899999999999999999884  499999999999999998764321              22 556


Q ss_pred             CceEEEeCccccCCCCHHHHHHHHHHcccCCcEEEEEEec
Q 019861          231 SIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYI  270 (334)
Q Consensus       231 ~fD~V~~~~vl~h~~d~~~~L~~i~r~LkpgG~lii~~~~  270 (334)
                      .||+|++     +.+++..+++++.++|+|||++++..+.
T Consensus       158 ~~D~v~~-----~~~~~~~~l~~~~~~L~~gG~l~~~~~~  192 (248)
T 2yvl_A          158 IFHAAFV-----DVREPWHYLEKVHKSLMEGAPVGFLLPT  192 (248)
T ss_dssp             CBSEEEE-----CSSCGGGGHHHHHHHBCTTCEEEEEESS
T ss_pred             cccEEEE-----CCcCHHHHHHHHHHHcCCCCEEEEEeCC
Confidence            8999997     4568888999999999999999998875

>1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6

Probab=99.28  E-value=1.1e-11  Score=113.77  Aligned_cols=89  Identities=22%  Similarity=0.341  Sum_probs=72.8

Q ss_pred             CCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCC---------------CCCCCCceEEEeCc-
Q 019861          176 VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES---------------NFPKDSIDAVHAGA-  239 (334)
Q Consensus       176 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~---------------~~~~~~fD~V~~~~-  239 (334)
                      .++.+|||||||+|.++..+++.+ ..+|+|+|++ .+++.|++++....               ++++++||+|++.. 
T Consensus        37 ~~~~~VLDiGcGtG~ls~~la~~g-~~~v~~vD~s-~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Ivs~~~  114 (328)
T 1g6q_1           37 FKDKIVLDVGCGTGILSMFAAKHG-AKHVIGVDMS-SIIEMAKELVELNGFSDKITLLRGKLEDVHLPFPKVDIIISEWM  114 (328)
T ss_dssp             HTTCEEEEETCTTSHHHHHHHHTC-CSEEEEEESS-THHHHHHHHHHHTTCTTTEEEEESCTTTSCCSSSCEEEEEECCC
T ss_pred             cCCCEEEEecCccHHHHHHHHHCC-CCEEEEEChH-HHHHHHHHHHHHcCCCCCEEEEECchhhccCCCCcccEEEEeCc
Confidence            357899999999999999999885 3589999999 68999988764321               34557899999874 


Q ss_pred             --cccCCCCHHHHHHHHHHcccCCcEEEE
Q 019861          240 --AIHCWSSPSTGVAEISRVLRPGGVFVG  266 (334)
Q Consensus       240 --vl~h~~d~~~~L~~i~r~LkpgG~lii  266 (334)
                        .+.+..++..++.++.++|+|||+++.
T Consensus       115 ~~~l~~~~~~~~~l~~~~~~LkpgG~li~  143 (328)
T 1g6q_1          115 GYFLLYESMMDTVLYARDHYLVEGGLIFP  143 (328)
T ss_dssp             BTTBSTTCCHHHHHHHHHHHEEEEEEEES
T ss_pred             hhhcccHHHHHHHHHHHHhhcCCCeEEEE
Confidence              455666788999999999999999974

>4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A*

Probab=99.28  E-value=4.4e-12  Score=124.85  Aligned_cols=92  Identities=18%  Similarity=0.289  Sum_probs=77.2

Q ss_pred             CCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCC----------------CCCCCCceEEEeCccc
Q 019861          178 GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES----------------NFPKDSIDAVHAGAAI  241 (334)
Q Consensus       178 ~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~----------------~~~~~~fD~V~~~~vl  241 (334)
                      +.+|||||||.|.++..|++.|.  .|+|||+++.+++.|+......+                .+.+++||+|++..+|
T Consensus        67 ~~~vLDvGCG~G~~~~~la~~ga--~V~giD~~~~~i~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~fD~v~~~e~~  144 (569)
T 4azs_A           67 PLNVLDLGCAQGFFSLSLASKGA--TIVGIDFQQENINVCRALAEENPDFAAEFRVGRIEEVIAALEEGEFDLAIGLSVF  144 (569)
T ss_dssp             CCEEEEETCTTSHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHTSTTSEEEEEECCHHHHHHHCCTTSCSEEEEESCH
T ss_pred             CCeEEEECCCCcHHHHHHHhCCC--EEEEECCCHHHHHHHHHHHHhcCCCceEEEECCHHHHhhhccCCCccEEEECcch
Confidence            67999999999999999999987  99999999999999998766443                2456799999999999


Q ss_pred             cCCCCHH--HHHHHHHHcccCCcEEEEEEecc
Q 019861          242 HCWSSPS--TGVAEISRVLRPGGVFVGTTYIV  271 (334)
Q Consensus       242 ~h~~d~~--~~L~~i~r~LkpgG~lii~~~~~  271 (334)
                      ||++||.  ..+..+.+.|+++|..++.....
T Consensus       145 ehv~~~~~~~~~~~~~~tl~~~~~~~~~~~~~  176 (569)
T 4azs_A          145 HHIVHLHGIDEVKRLLSRLADVTQAVILELAV  176 (569)
T ss_dssp             HHHHHHHCHHHHHHHHHHHHHHSSEEEEECCC
T ss_pred             hcCCCHHHHHHHHHHHHHhccccceeeEEecc
Confidence            9999986  33567778888888777665544

>3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A*

Probab=99.27  E-value=4.1e-13  Score=117.52  Aligned_cols=129  Identities=16%  Similarity=0.076  Sum_probs=95.6

Q ss_pred             CCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCC--------------CCCCCCceEEEeCcccc
Q 019861          177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES--------------NFPKDSIDAVHAGAAIH  242 (334)
Q Consensus       177 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~--------------~~~~~~fD~V~~~~vl~  242 (334)
                      ++.+|||+|||+|.++..++..+.  +|+|+|+++.+++.+++++....              ..++++||+|++...++
T Consensus        78 ~~~~vLD~gcG~G~~~~~la~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~~~~~~  155 (241)
T 3gdh_A           78 KCDVVVDAFCGVGGNTIQFALTGM--RVIAIDIDPVKIALARNNAEVYGIADKIEFICGDFLLLASFLKADVVFLSPPWG  155 (241)
T ss_dssp             CCSEEEETTCTTSHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHGGGCCCSEEEECCCCS
T ss_pred             CCCEEEECccccCHHHHHHHHcCC--EEEEEECCHHHHHHHHHHHHHcCCCcCeEEEECChHHhcccCCCCEEEECCCcC
Confidence            578999999999999999999874  99999999999999998865322              12457999999999999


Q ss_pred             CCCCHHHHHHHHHHcccCCcEEEEEEeccCCCCCchHHHHHHHHHhhhhcCccCCCCHHHHHHHHHhCCCcEEEE-eecC
Q 019861          243 CWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLCRACGLVDFKC-TRNR  321 (334)
Q Consensus       243 h~~d~~~~L~~i~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~l~~ll~~~Gf~~v~~-~~~g  321 (334)
                      |..++...+.+++++|+|||.+++.......            .  ..........+.+++..++...|...+.. ...+
T Consensus       156 ~~~~~~~~~~~~~~~L~pgG~~i~~~~~~~~------------~--~~~~~lp~~~~~~~~~~~l~~~g~~~i~~~~~~~  221 (241)
T 3gdh_A          156 GPDYATAETFDIRTMMSPDGFEIFRLSKKIT------------N--NIVYFLPRNADIDQVASLAGPGGQVEIEQNFLNN  221 (241)
T ss_dssp             SGGGGGSSSBCTTTSCSSCHHHHHHHHHHHC------------S--CEEEEEETTBCHHHHHHTTCTTCCEEEEEEEETT
T ss_pred             CcchhhhHHHHHHhhcCCcceeHHHHHHhhC------------C--ceEEECCCCCCHHHHHHHhccCCCEEEEehhhcC
Confidence            9888877888999999999985543211100            0  00001224567888999998888765553 3344

>3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A*

Probab=99.26  E-value=1.6e-11  Score=107.02  Aligned_cols=150  Identities=11%  Similarity=0.098  Sum_probs=104.3

Q ss_pred             CcHHHHHHHHcccCCCCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCC------------CCC
Q 019861          161 GPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES------------NFP  228 (334)
Q Consensus       161 ~~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~------------~~~  228 (334)
                      ..+.+...+...+..  +.+|||||||.|-++..+....+...|+++|+++.+++.+++++...+            ..+
T Consensus       118 ~lD~fY~~i~~~i~~--p~~VLDLGCG~GpLAl~~~~~~p~a~y~a~DId~~~le~a~~~l~~~g~~~~~~v~D~~~~~p  195 (281)
T 3lcv_B          118 HLDEFYRELFRHLPR--PNTLRDLACGLNPLAAPWMGLPAETVYIASDIDARLVGFVDEALTRLNVPHRTNVADLLEDRL  195 (281)
T ss_dssp             GHHHHHHHHGGGSCC--CSEEEETTCTTGGGCCTTTTCCTTCEEEEEESBHHHHHHHHHHHHHTTCCEEEEECCTTTSCC
T ss_pred             hHHHHHHHHHhccCC--CceeeeeccCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCceEEEeeecccCC
Confidence            344555566666643  679999999999999999988788899999999999999999876532            345


Q ss_pred             CCCceEEEeCccccCCCCHH--HHHHHHHHcccCCcEEEEEEeccCCCCCchHHHHHHHHHhhhhcCccCCCCHHHHHHH
Q 019861          229 KDSIDAVHAGAAIHCWSSPS--TGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDL  306 (334)
Q Consensus       229 ~~~fD~V~~~~vl~h~~d~~--~~L~~i~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~l~~l  306 (334)
                      .+.||+|++.-+++|+.+..  ..+ ++.+.|+++|+++-- |... .....+.   +...+           .+.|++.
T Consensus       196 ~~~~DvaL~lkti~~Le~q~kg~g~-~ll~aL~~~~vvVSf-p~ks-l~Grs~g---m~~~Y-----------~~~~e~~  258 (281)
T 3lcv_B          196 DEPADVTLLLKTLPCLETQQRGSGW-EVIDIVNSPNIVVTF-PTKS-LGQRSKG---MFQNY-----------SQSFESQ  258 (281)
T ss_dssp             CSCCSEEEETTCHHHHHHHSTTHHH-HHHHHSSCSEEEEEE-ECC--------C---HHHHH-----------HHHHHHH
T ss_pred             CCCcchHHHHHHHHHhhhhhhHHHH-HHHHHhCCCCEEEec-cchh-hcCCCcc---hhhHH-----------HHHHHHH
Confidence            78899999999999997553  344 899999999876643 3311 1011111   11222           3478888


Q ss_pred             HHhCCCcEEEEeecCcEEEEEEEc
Q 019861          307 CRACGLVDFKCTRNRGFVMFTATK  330 (334)
Q Consensus       307 l~~~Gf~~v~~~~~g~~~~~~a~K  330 (334)
                      +.+.|.. ++....+.-.+++.+|
T Consensus       259 ~~~~g~~-~~~~~~~nEl~y~i~k  281 (281)
T 3lcv_B          259 ARERSCR-IQRLEIGNELIYVIQK  281 (281)
T ss_dssp             HHHHTCC-EEEEEETTEEEEEEC-
T ss_pred             HHhcCCc-eeeeeecCeeEEEecC
Confidence            9999994 5555555444554443

>2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A

Probab=99.26  E-value=1.3e-11  Score=114.23  Aligned_cols=101  Identities=17%  Similarity=0.222  Sum_probs=79.8

Q ss_pred             HHHHcccCCCCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCC---------------CCCCCC
Q 019861          167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES---------------NFPKDS  231 (334)
Q Consensus       167 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~---------------~~~~~~  231 (334)
                      +.+.+.+...++.+|||||||+|.++..+++.+ ..+|+|+|+++ +++.+++++....               ++ .++
T Consensus        40 ~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~g-~~~V~~vD~s~-~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~-~~~  116 (348)
T 2y1w_A           40 RAILQNHTDFKDKIVLDVGCGSGILSFFAAQAG-ARKIYAVEAST-MAQHAEVLVKSNNLTDRIVVIPGKVEEVSL-PEQ  116 (348)
T ss_dssp             HHHHHTGGGTTTCEEEEETCTTSHHHHHHHHTT-CSEEEEEECST-HHHHHHHHHHHTTCTTTEEEEESCTTTCCC-SSC
T ss_pred             HHHHhccccCCcCEEEEcCCCccHHHHHHHhCC-CCEEEEECCHH-HHHHHHHHHHHcCCCCcEEEEEcchhhCCC-CCc
Confidence            455555555678899999999999999999875 46999999996 8888887764321               12 257


Q ss_pred             ceEEEeCccccCCCC--HHHHHHHHHHcccCCcEEEEEEec
Q 019861          232 IDAVHAGAAIHCWSS--PSTGVAEISRVLRPGGVFVGTTYI  270 (334)
Q Consensus       232 fD~V~~~~vl~h~~d--~~~~L~~i~r~LkpgG~lii~~~~  270 (334)
                      ||+|++..+++|+.+  ....+.+++++|+|||.+++...+
T Consensus       117 ~D~Ivs~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~  157 (348)
T 2y1w_A          117 VDIIISEPMGYMLFNERMLESYLHAKKYLKPSGNMFPTIGD  157 (348)
T ss_dssp             EEEEEECCCBTTBTTTSHHHHHHHGGGGEEEEEEEESCEEE
T ss_pred             eeEEEEeCchhcCChHHHHHHHHHHHhhcCCCeEEEEecCc
Confidence            999999999988864  457888999999999999876544

>1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A*

Probab=99.26  E-value=2.5e-11  Score=105.02  Aligned_cols=91  Identities=23%  Similarity=0.371  Sum_probs=74.6

Q ss_pred             CCCCCcEEEECCCcCHHHHHHHHc-CCCCeEEEEeCCHHHHHHHHHHHhcC--------C-----------CCCCCCceE
Q 019861          175 PVLGGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQQE--------S-----------NFPKDSIDA  234 (334)
Q Consensus       175 ~~~~~~vLDiGcG~G~~~~~l~~~-~~~~~v~giD~s~~~~~~a~~~~~~~--------~-----------~~~~~~fD~  234 (334)
                      ..++.+|||||||+|.++..+++. ++..+|+|+|+++.+++.++++....        .           ...+++||+
T Consensus        75 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~  154 (226)
T 1i1n_A           75 LHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMGYAEEAPYDA  154 (226)
T ss_dssp             SCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGCCGGGCCEEE
T ss_pred             CCCCCEEEEEcCCcCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhcccccCCCcEEEEECCcccCcccCCCcCE
Confidence            446789999999999999999887 45569999999999999998875431        1           123568999


Q ss_pred             EEeCccccCCCCHHHHHHHHHHcccCCcEEEEEEecc
Q 019861          235 VHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIV  271 (334)
Q Consensus       235 V~~~~vl~h~~d~~~~L~~i~r~LkpgG~lii~~~~~  271 (334)
                      |++...++++      ++++.++|+|||++++.....
T Consensus       155 i~~~~~~~~~------~~~~~~~LkpgG~lv~~~~~~  185 (226)
T 1i1n_A          155 IHVGAAAPVV------PQALIDQLKPGGRLILPVGPA  185 (226)
T ss_dssp             EEECSBBSSC------CHHHHHTEEEEEEEEEEESCT
T ss_pred             EEECCchHHH------HHHHHHhcCCCcEEEEEEecC
Confidence            9999999886      468899999999999987653

>2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E

Probab=99.25  E-value=1.8e-11  Score=107.56  Aligned_cols=89  Identities=19%  Similarity=0.246  Sum_probs=71.7

Q ss_pred             CCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcC----------C-------------C--CCCCC
Q 019861          177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQE----------S-------------N--FPKDS  231 (334)
Q Consensus       177 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~----------~-------------~--~~~~~  231 (334)
                      ++.+|||||||+|.++..++..++...++|+|+++.+++.+++++...          .             +  +++++
T Consensus        49 ~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~nv~~~~~D~~~~l~~~~~~~~  128 (246)
T 2vdv_E           49 KKVTIADIGCGFGGLMIDLSPAFPEDLILGMEIRVQVTNYVEDRIIALRNNTASKHGFQNINVLRGNAMKFLPNFFEKGQ  128 (246)
T ss_dssp             CCEEEEEETCTTSHHHHHHHHHSTTSEEEEEESCHHHHHHHHHHHHHHHHTC-CCSTTTTEEEEECCTTSCGGGTSCTTC
T ss_pred             CCCEEEEEcCCCCHHHHHHHHhCCCCCEEEEEcCHHHHHHHHHHHHHHhhccccccCCCcEEEEeccHHHHHHHhccccc
Confidence            467999999999999999999987779999999999999998764321          1             1  44677


Q ss_pred             ceEEEeCccccCCCCH-------------HHHHHHHHHcccCCcEEEEEEec
Q 019861          232 IDAVHAGAAIHCWSSP-------------STGVAEISRVLRPGGVFVGTTYI  270 (334)
Q Consensus       232 fD~V~~~~vl~h~~d~-------------~~~L~~i~r~LkpgG~lii~~~~  270 (334)
                      +|.|+..     +++|             ..+++++.++|+|||++++.+..
T Consensus       129 ~d~v~~~-----~p~p~~k~~~~~~r~~~~~~l~~~~~~LkpgG~l~~~td~  175 (246)
T 2vdv_E          129 LSKMFFC-----FPDPHFKQRKHKARIITNTLLSEYAYVLKEGGVVYTITDV  175 (246)
T ss_dssp             EEEEEEE-----SCCCC------CSSCCCHHHHHHHHHHEEEEEEEEEEESC
T ss_pred             cCEEEEE-----CCCcccccchhHHhhccHHHHHHHHHHcCCCCEEEEEecc
Confidence            8888743     4555             47999999999999999996643

>2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51

Probab=99.23  E-value=5.6e-11  Score=109.11  Aligned_cols=102  Identities=13%  Similarity=0.073  Sum_probs=76.7

Q ss_pred             HHHcccC-CCCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCC-----------C----CC---
Q 019861          168 LMKGYLK-PVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES-----------N----FP---  228 (334)
Q Consensus       168 ~l~~~l~-~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~-----------~----~~---  228 (334)
                      .+.+.+. ..++.+|||+|||+|.++..++..+.  +|+++|+|+.+++.+++++....           .    .+   
T Consensus       143 ~l~~~~~~~~~~~~VLDlgcGtG~~sl~la~~ga--~V~~VD~s~~al~~a~~n~~~~gl~~~~v~~i~~D~~~~l~~~~  220 (332)
T 2igt_A          143 WLKNAVETADRPLKVLNLFGYTGVASLVAAAAGA--EVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFIQREE  220 (332)
T ss_dssp             HHHHHHHHSSSCCEEEEETCTTCHHHHHHHHTTC--EEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHHHHHH
T ss_pred             HHHHHHHhcCCCCcEEEcccccCHHHHHHHHcCC--EEEEEECCHHHHHHHHHHHHHcCCCccceEEEECcHHHHHHHHH
Confidence            3444442 23467999999999999999999876  99999999999999998764211           0    01   


Q ss_pred             --CCCceEEEeCc----------cccCCCCHHHHHHHHHHcccCCcEEEEEEecc
Q 019861          229 --KDSIDAVHAGA----------AIHCWSSPSTGVAEISRVLRPGGVFVGTTYIV  271 (334)
Q Consensus       229 --~~~fD~V~~~~----------vl~h~~d~~~~L~~i~r~LkpgG~lii~~~~~  271 (334)
                        +++||+|++.-          ++++..+...+++++.++|+|||.+++.....
T Consensus       221 ~~~~~fD~Ii~dPP~~~~~~~~~~~~~~~~~~~ll~~~~~~LkpgG~lli~~~~~  275 (332)
T 2igt_A          221 RRGSTYDIILTDPPKFGRGTHGEVWQLFDHLPLMLDICREILSPKALGLVLTAYS  275 (332)
T ss_dssp             HHTCCBSEEEECCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCTTCCEEEEEECC
T ss_pred             hcCCCceEEEECCccccCCchHHHHHHHHHHHHHHHHHHHhcCcCcEEEEEECCC
Confidence              46899999942          22334456789999999999999988776653

>3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca}

Probab=99.23  E-value=2.3e-11  Score=104.09  Aligned_cols=91  Identities=15%  Similarity=0.178  Sum_probs=73.5

Q ss_pred             CCCcEEEECCCcCHHHHHHHHcCC-CCeEEEEeCCHHHHHHHHHHHhcCC----------------CCCCCCceEEEeCc
Q 019861          177 LGGNIIDASCGSGLFSRIFAKSGL-FSLVVALDYSENMLKQCYEFVQQES----------------NFPKDSIDAVHAGA  239 (334)
Q Consensus       177 ~~~~vLDiGcG~G~~~~~l~~~~~-~~~v~giD~s~~~~~~a~~~~~~~~----------------~~~~~~fD~V~~~~  239 (334)
                      ++.+|||||||+|..+..++...+ ..+++++|+++.+++.+++++....                +..++ ||+|++..
T Consensus        56 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~-fD~v~~~~  134 (210)
T 3c3p_A           56 QPQLVVVPGDGLGCASWWFARAISISSRVVMIDPDRDNVEHARRMLHDNGLIDRVELQVGDPLGIAAGQRD-IDILFMDC  134 (210)
T ss_dssp             CCSEEEEESCGGGHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHSGGGGEEEEESCHHHHHTTCCS-EEEEEEET
T ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCceEEEEEecHHHHhccCCC-CCEEEEcC
Confidence            467999999999999999998754 5699999999999999998754211                22245 99999874


Q ss_pred             cccCCCCHHHHHHHHHHcccCCcEEEEEEecc
Q 019861          240 AIHCWSSPSTGVAEISRVLRPGGVFVGTTYIV  271 (334)
Q Consensus       240 vl~h~~d~~~~L~~i~r~LkpgG~lii~~~~~  271 (334)
                      .   ..+...+++++.++|+|||++++.+...
T Consensus       135 ~---~~~~~~~l~~~~~~LkpgG~lv~~~~~~  163 (210)
T 3c3p_A          135 D---VFNGADVLERMNRCLAKNALLIAVNALR  163 (210)
T ss_dssp             T---TSCHHHHHHHHGGGEEEEEEEEEESSSS
T ss_pred             C---hhhhHHHHHHHHHhcCCCeEEEEECccc
Confidence            3   3577889999999999999999866544

>1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7

Probab=99.23  E-value=1.9e-11  Score=106.00  Aligned_cols=90  Identities=20%  Similarity=0.327  Sum_probs=73.2

Q ss_pred             CCCCCcEEEECCCcCHHHHHHHHcCC------CCeEEEEeCCHHHHHHHHHHHhcC------------------CCCCC-
Q 019861          175 PVLGGNIIDASCGSGLFSRIFAKSGL------FSLVVALDYSENMLKQCYEFVQQE------------------SNFPK-  229 (334)
Q Consensus       175 ~~~~~~vLDiGcG~G~~~~~l~~~~~------~~~v~giD~s~~~~~~a~~~~~~~------------------~~~~~-  229 (334)
                      ..++.+|||||||+|.++..+++...      ..+|+++|+++.+++.+++++...                  ..+++ 
T Consensus        82 ~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~  161 (227)
T 1r18_A           82 LKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEGDGRKGYPPN  161 (227)
T ss_dssp             CCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEESCGGGCCGGG
T ss_pred             CCCCCEEEEECCCccHHHHHHHHhcccccCCccCEEEEEEcCHHHHHHHHHHHHhcCccccCCCceEEEECCcccCCCcC
Confidence            45578999999999999999887532      248999999999999998865321                  02344 


Q ss_pred             CCceEEEeCccccCCCCHHHHHHHHHHcccCCcEEEEEEec
Q 019861          230 DSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYI  270 (334)
Q Consensus       230 ~~fD~V~~~~vl~h~~d~~~~L~~i~r~LkpgG~lii~~~~  270 (334)
                      ++||+|++..+++|+.      +++.+.|+|||++++....
T Consensus       162 ~~fD~I~~~~~~~~~~------~~~~~~LkpgG~lvi~~~~  196 (227)
T 1r18_A          162 APYNAIHVGAAAPDTP------TELINQLASGGRLIVPVGP  196 (227)
T ss_dssp             CSEEEEEECSCBSSCC------HHHHHTEEEEEEEEEEESC
T ss_pred             CCccEEEECCchHHHH------HHHHHHhcCCCEEEEEEec
Confidence            7899999999999875      6899999999999998764

>2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum}

Probab=99.23  E-value=3e-11  Score=104.58  Aligned_cols=90  Identities=21%  Similarity=0.252  Sum_probs=74.3

Q ss_pred             CCCCCcEEEECCCcCHHHHHHHHcC-----CCCeEEEEeCCHHHHHHHHHHHhcCC-------------------C----
Q 019861          175 PVLGGNIIDASCGSGLFSRIFAKSG-----LFSLVVALDYSENMLKQCYEFVQQES-------------------N----  226 (334)
Q Consensus       175 ~~~~~~vLDiGcG~G~~~~~l~~~~-----~~~~v~giD~s~~~~~~a~~~~~~~~-------------------~----  226 (334)
                      ..++.+|||||||+|.++..+++..     +..+|+|+|+++.+++.+++++....                   .    
T Consensus        78 ~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~  157 (227)
T 2pbf_A           78 LKPGSRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENIKRDKPELLKIDNFKIIHKNIYQVNEEEK  157 (227)
T ss_dssp             SCTTCEEEEESCTTSHHHHHHHHHTTTTTCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGSSTTEEEEECCGGGCCHHHH
T ss_pred             CCCCCEEEEECCCCCHHHHHHHHHhcccCCCCCEEEEEeCCHHHHHHHHHHHHHcCccccccCCEEEEECChHhcccccC
Confidence            4457899999999999999999875     45699999999999999998754211                   1    


Q ss_pred             CCCCCceEEEeCccccCCCCHHHHHHHHHHcccCCcEEEEEEec
Q 019861          227 FPKDSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYI  270 (334)
Q Consensus       227 ~~~~~fD~V~~~~vl~h~~d~~~~L~~i~r~LkpgG~lii~~~~  270 (334)
                      ...++||+|++...++|+      ++++.++|+|||++++..+.
T Consensus       158 ~~~~~fD~I~~~~~~~~~------~~~~~~~LkpgG~lv~~~~~  195 (227)
T 2pbf_A          158 KELGLFDAIHVGASASEL------PEILVDLLAENGKLIIPIEE  195 (227)
T ss_dssp             HHHCCEEEEEECSBBSSC------CHHHHHHEEEEEEEEEEEEE
T ss_pred             ccCCCcCEEEECCchHHH------HHHHHHhcCCCcEEEEEEcc
Confidence            224679999999999886      47889999999999998775

>3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032}

Probab=99.23  E-value=1.6e-10  Score=104.63  Aligned_cols=92  Identities=17%  Similarity=0.181  Sum_probs=73.9

Q ss_pred             CcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCC----------------CCCCCCceEEEeCcccc
Q 019861          179 GNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES----------------NFPKDSIDAVHAGAAIH  242 (334)
Q Consensus       179 ~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~----------------~~~~~~fD~V~~~~vl~  242 (334)
                      .+|||||||+|.++..+++..+..+++++|+++.+++.|++++....                .+++++||+|++.....
T Consensus        91 ~rVLdIG~G~G~la~~la~~~p~~~v~~VEidp~vi~~Ar~~~~~~~~~rv~v~~~Da~~~l~~~~~~~fDvIi~D~~~~  170 (317)
T 3gjy_A           91 LRITHLGGGACTMARYFADVYPQSRNTVVELDAELARLSREWFDIPRAPRVKIRVDDARMVAESFTPASRDVIIRDVFAG  170 (317)
T ss_dssp             CEEEEESCGGGHHHHHHHHHSTTCEEEEEESCHHHHHHHHHHSCCCCTTTEEEEESCHHHHHHTCCTTCEEEEEECCSTT
T ss_pred             CEEEEEECCcCHHHHHHHHHCCCcEEEEEECCHHHHHHHHHhccccCCCceEEEECcHHHHHhhccCCCCCEEEECCCCc
Confidence            49999999999999999997667799999999999999999875321                23467899999864332


Q ss_pred             CCC----CHHHHHHHHHHcccCCcEEEEEEec
Q 019861          243 CWS----SPSTGVAEISRVLRPGGVFVGTTYI  270 (334)
Q Consensus       243 h~~----d~~~~L~~i~r~LkpgG~lii~~~~  270 (334)
                      ...    ....++++++++|+|||++++....
T Consensus       171 ~~~~~~L~t~efl~~~~r~LkpgGvlv~~~~~  202 (317)
T 3gjy_A          171 AITPQNFTTVEFFEHCHRGLAPGGLYVANCGD  202 (317)
T ss_dssp             SCCCGGGSBHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred             cccchhhhHHHHHHHHHHhcCCCcEEEEEecC
Confidence            211    1257899999999999999987764

>3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0

Probab=99.23  E-value=2.5e-11  Score=104.81  Aligned_cols=93  Identities=14%  Similarity=0.114  Sum_probs=75.0

Q ss_pred             CCCCcEEEECCCcCHHHHHHHHcCC-CCeEEEEeCCHHHHHHHHHHHhcCC----------C-------CCC----CCce
Q 019861          176 VLGGNIIDASCGSGLFSRIFAKSGL-FSLVVALDYSENMLKQCYEFVQQES----------N-------FPK----DSID  233 (334)
Q Consensus       176 ~~~~~vLDiGcG~G~~~~~l~~~~~-~~~v~giD~s~~~~~~a~~~~~~~~----------~-------~~~----~~fD  233 (334)
                      .++.+|||||||+|..+..++...+ ..+++++|+++.+++.+++++....          .       +..    ++||
T Consensus        63 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD  142 (225)
T 3tr6_A           63 MQAKKVIDIGTFTGYSAIAMGLALPKDGTLITCDVDEKSTALAKEYWEKAGLSDKIGLRLSPAKDTLAELIHAGQAWQYD  142 (225)
T ss_dssp             HTCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHTTTCTTCEE
T ss_pred             hCCCEEEEeCCcchHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeCCHHHHHHHhhhccCCCCcc
Confidence            4567999999999999999998754 5799999999999999998875322          0       111    7899


Q ss_pred             EEEeCccccCCCCHHHHHHHHHHcccCCcEEEEEEecc
Q 019861          234 AVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIV  271 (334)
Q Consensus       234 ~V~~~~vl~h~~d~~~~L~~i~r~LkpgG~lii~~~~~  271 (334)
                      +|++...   ..+...+++++.++|+|||++++.+...
T Consensus       143 ~v~~~~~---~~~~~~~l~~~~~~L~pgG~lv~~~~~~  177 (225)
T 3tr6_A          143 LIYIDAD---KANTDLYYEESLKLLREGGLIAVDNVLR  177 (225)
T ss_dssp             EEEECSC---GGGHHHHHHHHHHHEEEEEEEEEECSSG
T ss_pred             EEEECCC---HHHHHHHHHHHHHhcCCCcEEEEeCCCc
Confidence            9997654   2356788999999999999999876654

>3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp}

Probab=99.21  E-value=7.9e-12  Score=109.73  Aligned_cols=96  Identities=11%  Similarity=0.115  Sum_probs=76.4

Q ss_pred             CCCCCcEEEECCCcCHHHHHHHHcCC-CCeEEEEeCCHHHHHHHHHHHhcCCC--------------CC-------CCCc
Q 019861          175 PVLGGNIIDASCGSGLFSRIFAKSGL-FSLVVALDYSENMLKQCYEFVQQESN--------------FP-------KDSI  232 (334)
Q Consensus       175 ~~~~~~vLDiGcG~G~~~~~l~~~~~-~~~v~giD~s~~~~~~a~~~~~~~~~--------------~~-------~~~f  232 (334)
                      ..++.+|||||||+|..+..+++..+ ..+|+++|+++.+++.|++++.....              ++       +++|
T Consensus        58 ~~~~~~VLDiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~~~~~~~~~~f  137 (242)
T 3r3h_A           58 LTRAKKVLELGTFTGYSALAMSLALPDDGQVITCDINEGWTKHAHPYWREAKQEHKIKLRLGPALDTLHSLLNEGGEHQF  137 (242)
T ss_dssp             HHTCSEEEEEESCCSHHHHHHHHTSCTTCEEEEEECCCSSCCCSHHHHHHTTCTTTEEEEESCHHHHHHHHHHHHCSSCE
T ss_pred             hcCcCEEEEeeCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHhhccCCCCE
Confidence            34467999999999999999998753 57999999999999999887753320              11       4789


Q ss_pred             eEEEeCccccCCCCHHHHHHHHHHcccCCcEEEEEEeccCC
Q 019861          233 DAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDG  273 (334)
Q Consensus       233 D~V~~~~vl~h~~d~~~~L~~i~r~LkpgG~lii~~~~~~~  273 (334)
                      |+|++...   ..+...+++++.++|+|||++++.+....+
T Consensus       138 D~V~~d~~---~~~~~~~l~~~~~~LkpGG~lv~d~~~~~g  175 (242)
T 3r3h_A          138 DFIFIDAD---KTNYLNYYELALKLVTPKGLIAIDNIFWDG  175 (242)
T ss_dssp             EEEEEESC---GGGHHHHHHHHHHHEEEEEEEEEECSSSSS
T ss_pred             eEEEEcCC---hHHhHHHHHHHHHhcCCCeEEEEECCccCC
Confidence            99998765   335667899999999999999997766543

>2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum}

Probab=99.21  E-value=1.9e-11  Score=103.73  Aligned_cols=95  Identities=17%  Similarity=0.284  Sum_probs=67.3

Q ss_pred             CCCCcEEEECCCcCHHHHHHHHcCC--CCeEEEEeCCHHHHHHHHHHHhc---CCC------------------------
Q 019861          176 VLGGNIIDASCGSGLFSRIFAKSGL--FSLVVALDYSENMLKQCYEFVQQ---ESN------------------------  226 (334)
Q Consensus       176 ~~~~~vLDiGcG~G~~~~~l~~~~~--~~~v~giD~s~~~~~~a~~~~~~---~~~------------------------  226 (334)
                      .++.+|||+|||+|.++..+++..+  ..+++|+|+++......-+....   ..+                        
T Consensus        21 ~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~~~~~v~~~~~d~~~~~~~~~~~~~~i~~~~~~~~~~~~~~  100 (201)
T 2plw_A           21 KKNKIILDIGCYPGSWCQVILERTKNYKNKIIGIDKKIMDPIPNVYFIQGEIGKDNMNNIKNINYIDNMNNNSVDYKLKE  100 (201)
T ss_dssp             CTTEEEEEESCTTCHHHHHHHHHTTTSCEEEEEEESSCCCCCTTCEEEECCTTTTSSCCC-----------CHHHHHHHH
T ss_pred             CCCCEEEEeCCCCCHHHHHHHHHcCCCCceEEEEeCCccCCCCCceEEEccccchhhhhhccccccccccchhhHHHHHh
Confidence            4578999999999999999998865  57999999998421000000000   001                        


Q ss_pred             -CCCCCceEEEeCccccCCC----CHH-------HHHHHHHHcccCCcEEEEEEec
Q 019861          227 -FPKDSIDAVHAGAAIHCWS----SPS-------TGVAEISRVLRPGGVFVGTTYI  270 (334)
Q Consensus       227 -~~~~~fD~V~~~~vl~h~~----d~~-------~~L~~i~r~LkpgG~lii~~~~  270 (334)
                       +++++||+|++...+++..    +..       .+++++.++|+|||.+++..+.
T Consensus       101 ~~~~~~fD~v~~~~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~  156 (201)
T 2plw_A          101 ILQDKKIDIILSDAAVPCIGNKIDDHLNSCELTLSITHFMEQYINIGGTYIVKMYL  156 (201)
T ss_dssp             HHTTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             hcCCCcccEEEeCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEEeC
Confidence             3457899999988877642    221       3789999999999999987654

>1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17

Probab=99.20  E-value=1.4e-10  Score=103.77  Aligned_cols=131  Identities=12%  Similarity=0.080  Sum_probs=91.7

Q ss_pred             CCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhc------CC-------------CCCCCCceEEEe
Q 019861          177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQ------ES-------------NFPKDSIDAVHA  237 (334)
Q Consensus       177 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~------~~-------------~~~~~~fD~V~~  237 (334)
                      .+.+|||||||+|.++..+++..+..+++++|+++.+++.|++++..      ..             +..+++||+|++
T Consensus        75 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vEid~~~v~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~fD~Ii~  154 (275)
T 1iy9_A           75 NPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKSENQYDVIMV  154 (275)
T ss_dssp             SCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTCCSCEEEEEE
T ss_pred             CCCEEEEECCchHHHHHHHHhCCCCceEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCeeEEEE
Confidence            36799999999999999999874456999999999999999987632      11             112578999999


Q ss_pred             CccccCCCC----HHHHHHHHHHcccCCcEEEEEEeccCCCCCchHHHHHHHHHhhhhcCccCCCCHHHHHHHHHhCCCc
Q 019861          238 GAAIHCWSS----PSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLCRACGLV  313 (334)
Q Consensus       238 ~~vl~h~~d----~~~~L~~i~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~l~~ll~~~Gf~  313 (334)
                      .......+.    ...++++++++|+|||++++...+...   ...                   ....+.+.+++. |.
T Consensus       155 d~~~~~~~~~~l~~~~~~~~~~~~L~pgG~lv~~~~~~~~---~~~-------------------~~~~~~~~l~~~-F~  211 (275)
T 1iy9_A          155 DSTEPVGPAVNLFTKGFYAGIAKALKEDGIFVAQTDNPWF---TPE-------------------LITNVQRDVKEI-FP  211 (275)
T ss_dssp             SCSSCCSCCCCCSTTHHHHHHHHHEEEEEEEEEECCCTTT---CHH-------------------HHHHHHHHHHTT-CS
T ss_pred             CCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEcCCccc---cHH-------------------HHHHHHHHHHHh-CC
Confidence            654322211    257899999999999999986543210   000                   123455667666 76


Q ss_pred             EEEEee-------cCcEEEEEEEc
Q 019861          314 DFKCTR-------NRGFVMFTATK  330 (334)
Q Consensus       314 ~v~~~~-------~g~~~~~~a~K  330 (334)
                      .+....       .|.+.++.+.|
T Consensus       212 ~v~~~~~~vp~~~~g~w~~~~ask  235 (275)
T 1iy9_A          212 ITKLYTANIPTYPSGLWTFTIGSK  235 (275)
T ss_dssp             EEEEEEECCTTSGGGCEEEEEEES
T ss_pred             CeEEEEEecCcccCcceEEEEeeC
Confidence            666442       45677777776

>1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A*

Probab=99.20  E-value=6.3e-11  Score=106.46  Aligned_cols=104  Identities=16%  Similarity=0.115  Sum_probs=77.0

Q ss_pred             HHHHHHHcccCCCCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCC----------CC---CCC
Q 019861          164 KEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES----------NF---PKD  230 (334)
Q Consensus       164 ~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~----------~~---~~~  230 (334)
                      .+.+.+...+...++.+|||+|||+|.++..++.. +..+++|+|+|+.+++.|+++.....          .+   ..+
T Consensus       110 ~lv~~~l~~~~~~~~~~vLDlG~GsG~~~~~la~~-~~~~v~~vDis~~al~~A~~n~~~~~l~~~v~~~~~D~~~~~~~  188 (284)
T 1nv8_A          110 ELVELALELIRKYGIKTVADIGTGSGAIGVSVAKF-SDAIVFATDVSSKAVEIARKNAERHGVSDRFFVRKGEFLEPFKE  188 (284)
T ss_dssp             HHHHHHHHHHHHHTCCEEEEESCTTSHHHHHHHHH-SSCEEEEEESCHHHHHHHHHHHHHTTCTTSEEEEESSTTGGGGG
T ss_pred             HHHHHHHHHhcccCCCEEEEEeCchhHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcchhhccc
Confidence            34444554443334679999999999999999998 66799999999999999998865321          11   124


Q ss_pred             Cc---eEEEeC------------ccccCCC--------CHHHHHHHHH-HcccCCcEEEEEEe
Q 019861          231 SI---DAVHAG------------AAIHCWS--------SPSTGVAEIS-RVLRPGGVFVGTTY  269 (334)
Q Consensus       231 ~f---D~V~~~------------~vl~h~~--------d~~~~L~~i~-r~LkpgG~lii~~~  269 (334)
                      +|   |+|+++            .+. |.+        |...+++++. +.|+|||++++...
T Consensus       189 ~f~~~D~IvsnPPyi~~~~~l~~~v~-~ep~~al~~~~dgl~~~~~i~~~~l~pgG~l~~e~~  250 (284)
T 1nv8_A          189 KFASIEMILSNPPYVKSSAHLPKDVL-FEPPEALFGGEDGLDFYREFFGRYDTSGKIVLMEIG  250 (284)
T ss_dssp             GTTTCCEEEECCCCBCGGGSCTTSCC-CSCHHHHBCTTTSCHHHHHHHHHCCCTTCEEEEECC
T ss_pred             ccCCCCEEEEcCCCCCcccccChhhc-cCcHHHhcCCCcHHHHHHHHHHhcCCCCCEEEEEEC
Confidence            78   999997            233 332        2237899999 99999999998543

>1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A*

Probab=99.20  E-value=1.1e-10  Score=105.57  Aligned_cols=92  Identities=13%  Similarity=0.107  Sum_probs=70.6

Q ss_pred             CCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhc------CC-------------CCCCCCceEEEe
Q 019861          177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQ------ES-------------NFPKDSIDAVHA  237 (334)
Q Consensus       177 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~------~~-------------~~~~~~fD~V~~  237 (334)
                      .+.+|||||||+|.++..+++..+..+++++|+++.+++.+++++..      ..             +..+++||+|++
T Consensus        90 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~~~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii~  169 (296)
T 1inl_A           90 NPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFKNEFDVIII  169 (296)
T ss_dssp             SCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGCSSCEEEEEE
T ss_pred             CCCEEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCceEEEE
Confidence            35799999999999999999875557999999999999999987632      11             122568999998


Q ss_pred             CccccC-CC-----CHHHHHHHHHHcccCCcEEEEEEe
Q 019861          238 GAAIHC-WS-----SPSTGVAEISRVLRPGGVFVGTTY  269 (334)
Q Consensus       238 ~~vl~h-~~-----d~~~~L~~i~r~LkpgG~lii~~~  269 (334)
                      ... .+ +.     ....++++++++|+|||++++...
T Consensus       170 d~~-~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~  206 (296)
T 1inl_A          170 DST-DPTAGQGGHLFTEEFYQACYDALKEDGVFSAETE  206 (296)
T ss_dssp             EC-----------CCSHHHHHHHHHHEEEEEEEEEECC
T ss_pred             cCC-CcccCchhhhhHHHHHHHHHHhcCCCcEEEEEcc
Confidence            532 22 21     126889999999999999999654

>1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A*

Probab=99.19  E-value=1.8e-10  Score=105.00  Aligned_cols=94  Identities=15%  Similarity=0.119  Sum_probs=74.3

Q ss_pred             CCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhc-------CC-------------CCCCCCceEEE
Q 019861          177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQ-------ES-------------NFPKDSIDAVH  236 (334)
Q Consensus       177 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~-------~~-------------~~~~~~fD~V~  236 (334)
                      .+.+|||||||+|.++..+++..+..+++++|+++.+++.|++++..       ..             +..+++||+|+
T Consensus        77 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii  156 (314)
T 1uir_A           77 EPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERYDVVI  156 (314)
T ss_dssp             CCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCCEEEEE
T ss_pred             CCCeEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccccCCceEEEEchHHHHHHhcCCCccEEE
Confidence            35799999999999999999875556999999999999999987642       11             11357899999


Q ss_pred             eCccccC-CCC------HHHHHHHHHHcccCCcEEEEEEec
Q 019861          237 AGAAIHC-WSS------PSTGVAEISRVLRPGGVFVGTTYI  270 (334)
Q Consensus       237 ~~~vl~h-~~d------~~~~L~~i~r~LkpgG~lii~~~~  270 (334)
                      +....++ ...      ...++++++++|+|||++++....
T Consensus       157 ~d~~~~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~  197 (314)
T 1uir_A          157 IDLTDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQTGM  197 (314)
T ss_dssp             EECCCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEEEEE
T ss_pred             ECCCCcccccCcchhccHHHHHHHHHHhcCCCcEEEEEccC
Confidence            9765533 112      268899999999999999997544

>3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A*

Probab=99.19  E-value=4.6e-10  Score=104.74  Aligned_cols=123  Identities=17%  Similarity=0.118  Sum_probs=91.0

Q ss_pred             cHHHHHHHHcccCCCCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCC---------------C
Q 019861          162 PEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES---------------N  226 (334)
Q Consensus       162 ~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~---------------~  226 (334)
                      .+.....+.... ..++.+|||+|||+|.++..++..+...+++|+|+++.+++.|++++...+               +
T Consensus       203 ~~~la~~l~~~~-~~~~~~vLD~gCGsG~~~i~~a~~~~~~~v~g~Dis~~~l~~A~~n~~~~gl~~~i~~~~~D~~~~~  281 (373)
T 3tm4_A          203 KASIANAMIELA-ELDGGSVLDPMCGSGTILIELALRRYSGEIIGIEKYRKHLIGAEMNALAAGVLDKIKFIQGDATQLS  281 (373)
T ss_dssp             CHHHHHHHHHHH-TCCSCCEEETTCTTCHHHHHHHHTTCCSCEEEEESCHHHHHHHHHHHHHTTCGGGCEEEECCGGGGG
T ss_pred             cHHHHHHHHHhh-cCCCCEEEEccCcCcHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChhhCC
Confidence            344445555555 566889999999999999999998866689999999999999999875322               3


Q ss_pred             CCCCCceEEEeCccccC-------CCCH-HHHHHHHHHcccCCcEEEEEEeccCCCCCchHHHHHHHHHhhhhcCccCCC
Q 019861          227 FPKDSIDAVHAGAAIHC-------WSSP-STGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFL  298 (334)
Q Consensus       227 ~~~~~fD~V~~~~vl~h-------~~d~-~~~L~~i~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  298 (334)
                      +++++||+|+++-....       +.+. ..++++++++|  ||.+++.+.                             
T Consensus       282 ~~~~~fD~Ii~npPyg~r~~~~~~~~~ly~~~~~~l~r~l--~g~~~~i~~-----------------------------  330 (373)
T 3tm4_A          282 QYVDSVDFAISNLPYGLKIGKKSMIPDLYMKFFNELAKVL--EKRGVFITT-----------------------------  330 (373)
T ss_dssp             GTCSCEEEEEEECCCC------CCHHHHHHHHHHHHHHHE--EEEEEEEES-----------------------------
T ss_pred             cccCCcCEEEECCCCCcccCcchhHHHHHHHHHHHHHHHc--CCeEEEEEC-----------------------------
Confidence            44678999999643221       1111 56788999988  565555443                             


Q ss_pred             CHHHHHHHHHhCCCcEEE
Q 019861          299 SEREIEDLCRACGLVDFK  316 (334)
Q Consensus       299 t~~~l~~ll~~~Gf~~v~  316 (334)
                      +.+.+.+.+++.||+..+
T Consensus       331 ~~~~~~~~~~~~G~~~~~  348 (373)
T 3tm4_A          331 EKKAIEEAIAENGFEIIH  348 (373)
T ss_dssp             CHHHHHHHHHHTTEEEEE
T ss_pred             CHHHHHHHHHHcCCEEEE
Confidence            356778889999998876

>1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A*

Probab=99.18  E-value=6.2e-11  Score=104.33  Aligned_cols=93  Identities=12%  Similarity=0.084  Sum_probs=75.1

Q ss_pred             CCCCcEEEECCCcCHHHHHHHHcCC-CCeEEEEeCCHHHHHHHHHHHhcCC----------------C-C-----CCCCc
Q 019861          176 VLGGNIIDASCGSGLFSRIFAKSGL-FSLVVALDYSENMLKQCYEFVQQES----------------N-F-----PKDSI  232 (334)
Q Consensus       176 ~~~~~vLDiGcG~G~~~~~l~~~~~-~~~v~giD~s~~~~~~a~~~~~~~~----------------~-~-----~~~~f  232 (334)
                      .++.+|||||||+|..+..++...+ ..+++++|+++.+++.|++++....                + +     ++++|
T Consensus        78 ~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~f  157 (247)
T 1sui_A           78 INAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVLDEMIKDEKNHGSY  157 (247)
T ss_dssp             TTCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSGGGTTCB
T ss_pred             hCcCEEEEeCCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHHHHHHhccCCCCCE
Confidence            3467999999999999999998854 5699999999999999998765321                0 1     15789


Q ss_pred             eEEEeCccccCCCCHHHHHHHHHHcccCCcEEEEEEecc
Q 019861          233 DAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIV  271 (334)
Q Consensus       233 D~V~~~~vl~h~~d~~~~L~~i~r~LkpgG~lii~~~~~  271 (334)
                      |+|++...   ..+...+++++.++|+|||++++.....
T Consensus       158 D~V~~d~~---~~~~~~~l~~~~~~LkpGG~lv~d~~~~  193 (247)
T 1sui_A          158 DFIFVDAD---KDNYLNYHKRLIDLVKVGGVIGYDNTLW  193 (247)
T ss_dssp             SEEEECSC---STTHHHHHHHHHHHBCTTCCEEEECTTG
T ss_pred             EEEEEcCc---hHHHHHHHHHHHHhCCCCeEEEEecCCc
Confidence            99998754   3467789999999999999999865443

>3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus}

Probab=99.17  E-value=1.8e-10  Score=106.64  Aligned_cols=111  Identities=18%  Similarity=0.004  Sum_probs=85.0

Q ss_pred             CCcHHHHHHHHcccCCCCCCcEEEECCCcCHHHHHHHHcC-CCCeEEEEeCCHHHHHHHHHHHhcCC-------------
Q 019861          160 PGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSG-LFSLVVALDYSENMLKQCYEFVQQES-------------  225 (334)
Q Consensus       160 ~~~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~~v~giD~s~~~~~~a~~~~~~~~-------------  225 (334)
                      +..+.+...+.......++.+|||+|||+|.++..++..+ +...++|+|+++.+++.|++++...+             
T Consensus       186 ~l~~~la~~l~~~~~~~~~~~vLD~gcGsG~~~ie~a~~~~~~~~v~g~Di~~~~i~~a~~n~~~~g~~~i~~~~~D~~~  265 (354)
T 3tma_A          186 SLTPVLAQALLRLADARPGMRVLDPFTGSGTIALEAASTLGPTSPVYAGDLDEKRLGLAREAALASGLSWIRFLRADARH  265 (354)
T ss_dssp             SCCHHHHHHHHHHTTCCTTCCEEESSCTTSHHHHHHHHHHCTTSCEEEEESCHHHHHHHHHHHHHTTCTTCEEEECCGGG
T ss_pred             CcCHHHHHHHHHHhCCCCCCEEEeCCCCcCHHHHHHHHhhCCCceEEEEECCHHHHHHHHHHHHHcCCCceEEEeCChhh
Confidence            3345566667777777778899999999999999999875 56799999999999999999876332             


Q ss_pred             -CCCCCCceEEEeCccccCCC--------CHHHHHHHHHHcccCCcEEEEEEec
Q 019861          226 -NFPKDSIDAVHAGAAIHCWS--------SPSTGVAEISRVLRPGGVFVGTTYI  270 (334)
Q Consensus       226 -~~~~~~fD~V~~~~vl~h~~--------d~~~~L~~i~r~LkpgG~lii~~~~  270 (334)
                       +.+.+.||+|+++--.....        ....+++++.++|+|||.+++.+++
T Consensus       266 ~~~~~~~~D~Ii~npPyg~r~~~~~~~~~~~~~~~~~~~~~LkpgG~l~i~t~~  319 (354)
T 3tma_A          266 LPRFFPEVDRILANPPHGLRLGRKEGLFHLYWDFLRGALALLPPGGRVALLTLR  319 (354)
T ss_dssp             GGGTCCCCSEEEECCCSCC----CHHHHHHHHHHHHHHHHTSCTTCEEEEEESC
T ss_pred             CccccCCCCEEEECCCCcCccCCcccHHHHHHHHHHHHHHhcCCCcEEEEEeCC
Confidence             23356799999964322111        1257899999999999999998764

>2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans}

Probab=99.17  E-value=4e-11  Score=104.80  Aligned_cols=102  Identities=20%  Similarity=0.221  Sum_probs=78.7

Q ss_pred             HHHHcccCCCCCCcEEEECCCcCHHHHHHHHcCC-CCeEEEEeCCHHHHHHHHHHHhcCC----------------C---
Q 019861          167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGL-FSLVVALDYSENMLKQCYEFVQQES----------------N---  226 (334)
Q Consensus       167 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~-~~~v~giD~s~~~~~~a~~~~~~~~----------------~---  226 (334)
                      ..+...+...++.+|||||||+|..+..+++..+ ..+++++|+++.+++.+++++....                +   
T Consensus        50 ~~l~~l~~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~  129 (239)
T 2hnk_A           50 QFLNILTKISGAKRIIEIGTFTGYSSLCFASALPEDGKILCCDVSEEWTNVARKYWKENGLENKIFLKLGSALETLQVLI  129 (239)
T ss_dssp             HHHHHHHHHHTCSEEEEECCTTCHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHH
T ss_pred             HHHHHHHHhhCcCEEEEEeCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHHHHHHH
Confidence            3444444444578999999999999999998854 5699999999999999998764321                0   


Q ss_pred             -----------CCC--CCceEEEeCccccCCCCHHHHHHHHHHcccCCcEEEEEEecc
Q 019861          227 -----------FPK--DSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIV  271 (334)
Q Consensus       227 -----------~~~--~~fD~V~~~~vl~h~~d~~~~L~~i~r~LkpgG~lii~~~~~  271 (334)
                                 |++  ++||+|++....+   +...+++++.++|+|||++++.+...
T Consensus       130 ~~~~~~~~~~~f~~~~~~fD~I~~~~~~~---~~~~~l~~~~~~L~pgG~lv~~~~~~  184 (239)
T 2hnk_A          130 DSKSAPSWASDFAFGPSSIDLFFLDADKE---NYPNYYPLILKLLKPGGLLIADNVLW  184 (239)
T ss_dssp             HCSSCCGGGTTTCCSTTCEEEEEECSCGG---GHHHHHHHHHHHEEEEEEEEEECSSG
T ss_pred             hhcccccccccccCCCCCcCEEEEeCCHH---HHHHHHHHHHHHcCCCeEEEEEcccc
Confidence                       122  7899999986544   45678999999999999999976544

>2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A*

Probab=99.16  E-value=2.1e-10  Score=104.79  Aligned_cols=93  Identities=13%  Similarity=0.152  Sum_probs=73.0

Q ss_pred             CCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhc------CCC-------------CCCCCceEEEe
Q 019861          177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQ------ESN-------------FPKDSIDAVHA  237 (334)
Q Consensus       177 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~------~~~-------------~~~~~fD~V~~  237 (334)
                      .+.+|||||||+|.++..+++..+..+++++|+++.+++.|++++..      ...             ..+++||+|++
T Consensus       116 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDis~~~l~~ar~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fDvIi~  195 (321)
T 2pt6_A          116 EPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDVIIV  195 (321)
T ss_dssp             SCCEEEEEECTTCHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEEEEEE
T ss_pred             CCCEEEEEcCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEEccHHHHHhhcCCCceEEEE
Confidence            35799999999999999999875567999999999999999998653      110             12568999998


Q ss_pred             CccccCCC---C--HHHHHHHHHHcccCCcEEEEEEec
Q 019861          238 GAAIHCWS---S--PSTGVAEISRVLRPGGVFVGTTYI  270 (334)
Q Consensus       238 ~~vl~h~~---d--~~~~L~~i~r~LkpgG~lii~~~~  270 (334)
                      ... +++.   +  ...++++++++|+|||++++...+
T Consensus       196 d~~-~p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~  232 (321)
T 2pt6_A          196 DSS-DPIGPAETLFNQNFYEKIYNALKPNGYCVAQCES  232 (321)
T ss_dssp             ECC-CSSSGGGGGSSHHHHHHHHHHEEEEEEEEEEECC
T ss_pred             CCc-CCCCcchhhhHHHHHHHHHHhcCCCcEEEEEcCC
Confidence            643 2221   1  168899999999999999997544

>3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii}

Probab=99.15  E-value=1.8e-10  Score=102.81  Aligned_cols=92  Identities=20%  Similarity=0.182  Sum_probs=76.2

Q ss_pred             CCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCC------------CCC-CCCceEEEeCcccc
Q 019861          176 VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES------------NFP-KDSIDAVHAGAAIH  242 (334)
Q Consensus       176 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~------------~~~-~~~fD~V~~~~vl~  242 (334)
                      .++.+|||+|||+|.++..+++.++..+|+|+|+++.+++.++++.....            .++ .++||+|++.... 
T Consensus       118 ~~~~~VLDlgcG~G~~s~~la~~~~~~~V~~vD~s~~av~~a~~n~~~n~l~~~~~~~~d~~~~~~~~~~D~Vi~d~p~-  196 (272)
T 3a27_A          118 NENEVVVDMFAGIGYFTIPLAKYSKPKLVYAIEKNPTAYHYLCENIKLNKLNNVIPILADNRDVELKDVADRVIMGYVH-  196 (272)
T ss_dssp             CTTCEEEETTCTTTTTHHHHHHHTCCSEEEEEECCHHHHHHHHHHHHHTTCSSEEEEESCGGGCCCTTCEEEEEECCCS-
T ss_pred             CCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEECChHHcCccCCceEEEECCcc-
Confidence            45789999999999999999998656799999999999999998765321            111 4589999988653 


Q ss_pred             CCCCHHHHHHHHHHcccCCcEEEEEEecc
Q 019861          243 CWSSPSTGVAEISRVLRPGGVFVGTTYIV  271 (334)
Q Consensus       243 h~~d~~~~L~~i~r~LkpgG~lii~~~~~  271 (334)
                         +...++.++.+.|+|||+++++....
T Consensus       197 ---~~~~~l~~~~~~LkpgG~l~~s~~~~  222 (272)
T 3a27_A          197 ---KTHKFLDKTFEFLKDRGVIHYHETVA  222 (272)
T ss_dssp             ---SGGGGHHHHHHHEEEEEEEEEEEEEE
T ss_pred             ---cHHHHHHHHHHHcCCCCEEEEEEcCc
Confidence               66778999999999999999988765

>2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii}

Probab=99.15  E-value=3.2e-10  Score=108.36  Aligned_cols=105  Identities=19%  Similarity=0.236  Sum_probs=82.1

Q ss_pred             HHHHcccCCCCCCcEEEECCCcCHHHHHHHHcCCC-CeEEEEeCCHHHHHHHHHHHhcCC--------------C--CCC
Q 019861          167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLF-SLVVALDYSENMLKQCYEFVQQES--------------N--FPK  229 (334)
Q Consensus       167 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~-~~v~giD~s~~~~~~a~~~~~~~~--------------~--~~~  229 (334)
                      ..+...+...++.+|||+|||+|..+..++...+. ..++++|+++.+++.+++++...+              +  +++
T Consensus       249 ~l~~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~a~D~s~~~l~~~~~~~~~~g~~~v~~~~~D~~~~~~~~~~  328 (450)
T 2yxl_A          249 AVASIVLDPKPGETVVDLAAAPGGKTTHLAELMKNKGKIYAFDVDKMRMKRLKDFVKRMGIKIVKPLVKDARKAPEIIGE  328 (450)
T ss_dssp             HHHHHHHCCCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCTTCCSSSSCS
T ss_pred             HHHHHhcCCCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEEEcChhhcchhhcc
Confidence            34445566777889999999999999999987543 699999999999999998865321              1  333


Q ss_pred             CCceEEEe------CccccCCCCH----------------HHHHHHHHHcccCCcEEEEEEecc
Q 019861          230 DSIDAVHA------GAAIHCWSSP----------------STGVAEISRVLRPGGVFVGTTYIV  271 (334)
Q Consensus       230 ~~fD~V~~------~~vl~h~~d~----------------~~~L~~i~r~LkpgG~lii~~~~~  271 (334)
                      ++||+|++      ..++++.++.                ..+|+++.++|||||++++++...
T Consensus       329 ~~fD~Vl~D~Pcsg~g~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvy~tcs~  392 (450)
T 2yxl_A          329 EVADKVLLDAPCTSSGTIGKNPELRWRLREDKINEMSQLQRELLESAARLVKPGGRLLYTTCSI  392 (450)
T ss_dssp             SCEEEEEEECCCCCGGGTTTSTTHHHHCCTTSHHHHHHHHHHHHHHHHTTEEEEEEEEEEESCC
T ss_pred             CCCCEEEEcCCCCCCeeeccChhhhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCC
Confidence            78999996      3456655553                568999999999999999988764

>3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP}

Probab=99.15  E-value=6.1e-11  Score=103.29  Aligned_cols=93  Identities=15%  Similarity=0.076  Sum_probs=74.4

Q ss_pred             CCCCcEEEECCCcCHHHHHHHHcCC-CCeEEEEeCCHHHHHHHHHHHhcCC-------------------CCCC--CCce
Q 019861          176 VLGGNIIDASCGSGLFSRIFAKSGL-FSLVVALDYSENMLKQCYEFVQQES-------------------NFPK--DSID  233 (334)
Q Consensus       176 ~~~~~vLDiGcG~G~~~~~l~~~~~-~~~v~giD~s~~~~~~a~~~~~~~~-------------------~~~~--~~fD  233 (334)
                      .++.+|||||||+|..+..++...+ ..+++++|+++.+++.|++++....                   +..+  ++||
T Consensus        71 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~l~~l~~~~~~~~fD  150 (232)
T 3cbg_A           71 TGAKQVLEIGVFRGYSALAMALQLPPDGQIIACDQDPNATAIAKKYWQKAGVAEKISLRLGPALATLEQLTQGKPLPEFD  150 (232)
T ss_dssp             HTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHTSSSCCCEE
T ss_pred             cCCCEEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCCcC
Confidence            3467999999999999999998754 5699999999999999998764211                   1112  7899


Q ss_pred             EEEeCccccCCCCHHHHHHHHHHcccCCcEEEEEEecc
Q 019861          234 AVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIV  271 (334)
Q Consensus       234 ~V~~~~vl~h~~d~~~~L~~i~r~LkpgG~lii~~~~~  271 (334)
                      +|++....   .+...+++++.++|+|||++++.....
T Consensus       151 ~V~~d~~~---~~~~~~l~~~~~~LkpgG~lv~~~~~~  185 (232)
T 3cbg_A          151 LIFIDADK---RNYPRYYEIGLNLLRRGGLMVIDNVLW  185 (232)
T ss_dssp             EEEECSCG---GGHHHHHHHHHHTEEEEEEEEEECTTG
T ss_pred             EEEECCCH---HHHHHHHHHHHHHcCCCeEEEEeCCCc
Confidence            99987652   356788999999999999999976654

>2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens}

Probab=99.15  E-value=2e-11  Score=103.03  Aligned_cols=96  Identities=19%  Similarity=0.287  Sum_probs=67.3

Q ss_pred             CCCCCcEEEECCCcCHHHHHHHHcCCC---------CeEEEEeCCHHH-HHHHHHHH-hcCC-----------CCCCCCc
Q 019861          175 PVLGGNIIDASCGSGLFSRIFAKSGLF---------SLVVALDYSENM-LKQCYEFV-QQES-----------NFPKDSI  232 (334)
Q Consensus       175 ~~~~~~vLDiGcG~G~~~~~l~~~~~~---------~~v~giD~s~~~-~~~a~~~~-~~~~-----------~~~~~~f  232 (334)
                      ..++.+|||+|||+|.++..+++..+.         .+++|+|+++.. +..++ .. ..+.           .+++++|
T Consensus        20 ~~~~~~vLDlGcG~G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~~~~~~~~-~~~~~d~~~~~~~~~~~~~~~~~~f   98 (196)
T 2nyu_A           20 LRPGLRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIFPLEGAT-FLCPADVTDPRTSQRILEVLPGRRA   98 (196)
T ss_dssp             CCTTCEEEEETCCSCHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCCCCCTTCE-EECSCCTTSHHHHHHHHHHSGGGCE
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHHHhccccccccCCCceEEEEechhcccCCCCe-EEEeccCCCHHHHHHHHHhcCCCCC
Confidence            345789999999999999999988432         689999999843 11000 01 1110           1234689


Q ss_pred             eEEEeCccccCC----CCH-------HHHHHHHHHcccCCcEEEEEEecc
Q 019861          233 DAVHAGAAIHCW----SSP-------STGVAEISRVLRPGGVFVGTTYIV  271 (334)
Q Consensus       233 D~V~~~~vl~h~----~d~-------~~~L~~i~r~LkpgG~lii~~~~~  271 (334)
                      |+|++...++..    .++       ..+++++.++|+|||++++.++..
T Consensus        99 D~V~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~  148 (196)
T 2nyu_A           99 DVILSDMAPNATGFRDLDHDRLISLCLTLLSVTPDILQPGGTFLCKTWAG  148 (196)
T ss_dssp             EEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEECCS
T ss_pred             cEEEeCCCCCCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCEEEEEecCC
Confidence            999997654432    233       478999999999999999987653

>3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus}

Probab=99.14  E-value=7.9e-11  Score=113.27  Aligned_cols=100  Identities=17%  Similarity=0.251  Sum_probs=77.5

Q ss_pred             HHHHcccCCCCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCC-------------CCC-CCCc
Q 019861          167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES-------------NFP-KDSI  232 (334)
Q Consensus       167 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~-------------~~~-~~~f  232 (334)
                      +.+...+...++.+|||||||+|.++..+++.+ ..+|+|+|+++ +++.|++++....             .++ .++|
T Consensus       148 ~~il~~l~~~~~~~VLDiGcGtG~la~~la~~~-~~~V~gvD~s~-~l~~A~~~~~~~gl~~~v~~~~~d~~~~~~~~~f  225 (480)
T 3b3j_A          148 RAILQNHTDFKDKIVLDVGCGSGILSFFAAQAG-ARKIYAVEAST-MAQHAEVLVKSNNLTDRIVVIPGKVEEVSLPEQV  225 (480)
T ss_dssp             HHHHHTGGGTTTCEEEEESCSTTHHHHHHHHTT-CSEEEEEECHH-HHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSCE
T ss_pred             HHHHHhhhhcCCCEEEEecCcccHHHHHHHHcC-CCEEEEEEcHH-HHHHHHHHHHHcCCCCcEEEEECchhhCccCCCe
Confidence            445555555567899999999999999998864 46999999998 8999988754321             111 3589


Q ss_pred             eEEEeCccccCCCCH--HHHHHHHHHcccCCcEEEEEE
Q 019861          233 DAVHAGAAIHCWSSP--STGVAEISRVLRPGGVFVGTT  268 (334)
Q Consensus       233 D~V~~~~vl~h~~d~--~~~L~~i~r~LkpgG~lii~~  268 (334)
                      |+|++..+++|+.+.  ...+.+++++|+|||.+++..
T Consensus       226 D~Ivs~~~~~~~~~e~~~~~l~~~~~~LkpgG~li~~~  263 (480)
T 3b3j_A          226 DIIISEPMGYMLFNERMLESYLHAKKYLKPSGNMFPTI  263 (480)
T ss_dssp             EEEECCCCHHHHTCHHHHHHHHHGGGGEEEEEEEESCE
T ss_pred             EEEEEeCchHhcCcHHHHHHHHHHHHhcCCCCEEEEEe
Confidence            999999888888654  567788999999999998644

>2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45

Probab=99.14  E-value=4.9e-10  Score=103.40  Aligned_cols=114  Identities=13%  Similarity=0.123  Sum_probs=83.8

Q ss_pred             CCCCcHHHHHHHHccc----CCCCCCcEEEECCCcCHHHHHHHHcCCC-----CeEEEEeCCHHHHHHHHHHHhcC----
Q 019861          158 GFPGPEKEFELMKGYL----KPVLGGNIIDASCGSGLFSRIFAKSGLF-----SLVVALDYSENMLKQCYEFVQQE----  224 (334)
Q Consensus       158 ~~~~~~~~~~~l~~~l----~~~~~~~vLDiGcG~G~~~~~l~~~~~~-----~~v~giD~s~~~~~~a~~~~~~~----  224 (334)
                      .+..|......+...+    .+.++.+|||+|||+|.++..+++..+.     ..++|+|+++.+++.|+.++...    
T Consensus       107 ~~~TP~~i~~~~~~ll~~l~~~~~~~~VlDp~cGsG~~l~~~~~~~~~~~~~~~~v~GiDi~~~~~~~a~~n~~~~g~~~  186 (344)
T 2f8l_A          107 HQMTPDSIGFIVAYLLEKVIQKKKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQKM  186 (344)
T ss_dssp             GCCCCHHHHHHHHHHHHHHHTTCSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTCCC
T ss_pred             cCCChHHHHHHHHHHHHHhcCCCCCCEEEeCCCCccHHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHHHHhCCCCc
Confidence            3455665544433332    4445679999999999999988876532     58999999999999999875421    


Q ss_pred             --------CCCCCCCceEEEeCccccCCCCH------------------HHHHHHHHHcccCCcEEEEEEecc
Q 019861          225 --------SNFPKDSIDAVHAGAAIHCWSSP------------------STGVAEISRVLRPGGVFVGTTYIV  271 (334)
Q Consensus       225 --------~~~~~~~fD~V~~~~vl~h~~d~------------------~~~L~~i~r~LkpgG~lii~~~~~  271 (334)
                              .+...+.||+|+++--+.++++.                  ..+++++.+.|+|||++++..++.
T Consensus       187 ~i~~~D~l~~~~~~~fD~Ii~NPPfg~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~Lk~gG~~~~v~p~~  259 (344)
T 2f8l_A          187 TLLHQDGLANLLVDPVDVVISDLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFLVPDA  259 (344)
T ss_dssp             EEEESCTTSCCCCCCEEEEEEECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEEEEGG
T ss_pred             eEEECCCCCccccCCccEEEECCCCCCcCchhhhhhccccCCCCcchHHHHHHHHHHHHhCCCCEEEEEECch
Confidence                    12345789999998665555432                  257999999999999999999863

>3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A*

Probab=99.13  E-value=6.9e-10  Score=95.84  Aligned_cols=144  Identities=8%  Similarity=-0.032  Sum_probs=93.8

Q ss_pred             HHHHHHcccCCCCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCC------------CCCCCCc
Q 019861          165 EFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES------------NFPKDSI  232 (334)
Q Consensus       165 ~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~------------~~~~~~f  232 (334)
                      ....+...   .++.+|||||||.|.++..+.   +...|+|+|+++.+++.++++.....            ..+.++|
T Consensus        96 fY~~i~~~---~~p~~VLDlGCG~gpLal~~~---~~~~y~a~DId~~~i~~ar~~~~~~g~~~~~~v~D~~~~~~~~~~  169 (253)
T 3frh_A           96 LYDFIFSA---ETPRRVLDIACGLNPLALYER---GIASVWGCDIHQGLGDVITPFAREKDWDFTFALQDVLCAPPAEAG  169 (253)
T ss_dssp             HHHHHTSS---CCCSEEEEETCTTTHHHHHHT---TCSEEEEEESBHHHHHHHHHHHHHTTCEEEEEECCTTTSCCCCBC
T ss_pred             HHHHHhcC---CCCCeEEEecCCccHHHHHhc---cCCeEEEEeCCHHHHHHHHHHHHhcCCCceEEEeecccCCCCCCc
Confidence            33444444   457899999999999999888   45699999999999999999865422            2345689


Q ss_pred             eEEEeCccccCCCCH-HHHHHHHHHcccCCcEEEEEEeccCCCCCchHHHHHHHHHhhhhcCccCCCCHHHHHHHHHhCC
Q 019861          233 DAVHAGAAIHCWSSP-STGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLCRACG  311 (334)
Q Consensus       233 D~V~~~~vl~h~~d~-~~~L~~i~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~l~~ll~~~G  311 (334)
                      |+|++.-++||+.+. ...+-++.+.|+++|+++ +.|... .....+.   +..           .-.+.|++.+ ...
T Consensus       170 DvvLllk~lh~LE~q~~~~~~~ll~aL~~~~vvV-sfPtks-l~Gr~~g---m~~-----------~Y~~~~e~~~-~~~  232 (253)
T 3frh_A          170 DLALIFKLLPLLEREQAGSAMALLQSLNTPRMAV-SFPTRS-LGGRGKG---MEA-----------NYAAWFEGGL-PAE  232 (253)
T ss_dssp             SEEEEESCHHHHHHHSTTHHHHHHHHCBCSEEEE-EEECC--------------------------CHHHHHHHHS-CTT
T ss_pred             chHHHHHHHHHhhhhchhhHHHHHHHhcCCCEEE-EcChHH-hcCCCcc---hhh-----------HHHHHHHHHh-hcc
Confidence            999999888887533 223348888999987554 445321 1111111   101           1133555555 456


Q ss_pred             CcEEEEeecCcEEEEEEEcC
Q 019861          312 LVDFKCTRNRGFVMFTATKP  331 (334)
Q Consensus       312 f~~v~~~~~g~~~~~~a~K~  331 (334)
                      +.+++....|.-.+++.+|.
T Consensus       233 ~~~~~~~~~~nEl~~~i~~~  252 (253)
T 3frh_A          233 FEIEDKKTIGTELIYLIKKN  252 (253)
T ss_dssp             EEEEEEEEETTEEEEEEEEC
T ss_pred             chhhhheecCceEEEEEecC
Confidence            67788777777677766663

>3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A

Probab=99.12  E-value=1.7e-10  Score=103.13  Aligned_cols=103  Identities=16%  Similarity=0.079  Sum_probs=78.5

Q ss_pred             HcccCCCCCCcEEEECCCcCHHHHHHHHcCCC-CeEEEEeCCHHHHHHHHHHHhcCC--------------CC----CCC
Q 019861          170 KGYLKPVLGGNIIDASCGSGLFSRIFAKSGLF-SLVVALDYSENMLKQCYEFVQQES--------------NF----PKD  230 (334)
Q Consensus       170 ~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~-~~v~giD~s~~~~~~a~~~~~~~~--------------~~----~~~  230 (334)
                      ...+...++.+|||+|||+|..+..+++..+. .+|+|+|+++.+++.+++++...+              +.    .++
T Consensus        76 ~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avD~~~~~l~~~~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~  155 (274)
T 3ajd_A           76 PIVLNPREDDFILDMCAAPGGKTTHLAQLMKNKGTIVAVEISKTRTKALKSNINRMGVLNTIIINADMRKYKDYLLKNEI  155 (274)
T ss_dssp             HHHHCCCTTCEEEETTCTTCHHHHHHHHHTTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCHHHHHHHHHHTTC
T ss_pred             HHHhCCCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEECCCHHHHHHHHHHHHHhCCCcEEEEeCChHhcchhhhhccc
Confidence            34455667889999999999999999986433 699999999999999998865332              01    256


Q ss_pred             CceEEEeC------cccc------------CCCCHHHHHHHHHHcccCCcEEEEEEeccC
Q 019861          231 SIDAVHAG------AAIH------------CWSSPSTGVAEISRVLRPGGVFVGTTYIVD  272 (334)
Q Consensus       231 ~fD~V~~~------~vl~------------h~~d~~~~L~~i~r~LkpgG~lii~~~~~~  272 (334)
                      +||+|++.      .++.            +......+|+++.++|||||++++++....
T Consensus       156 ~fD~Vl~d~Pcs~~g~~~~~p~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~stcs~~  215 (274)
T 3ajd_A          156 FFDKILLDAPCSGNIIKDKNRNVSEEDIKYCSLRQKELIDIGIDLLKKDGELVYSTCSME  215 (274)
T ss_dssp             CEEEEEEEECCC------------HHHHTGGGTCHHHHHHHHHHHEEEEEEEEEEESCCC
T ss_pred             cCCEEEEcCCCCCCcccccCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEECCCC
Confidence            89999986      2222            123557899999999999999999887653

>2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A*

Probab=99.11  E-value=4e-10  Score=101.17  Aligned_cols=94  Identities=13%  Similarity=0.114  Sum_probs=73.7

Q ss_pred             CCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcC------C-------------CCCCCCceEEEe
Q 019861          177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQE------S-------------NFPKDSIDAVHA  237 (334)
Q Consensus       177 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~------~-------------~~~~~~fD~V~~  237 (334)
                      ++.+|||||||+|.++..+++..+..+++++|+++.+++.+++++...      .             ...+++||+|++
T Consensus        78 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii~  157 (283)
T 2i7c_A           78 EPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDVIIV  157 (283)
T ss_dssp             SCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEEEEEE
T ss_pred             CCCeEEEEeCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhccccCCCcEEEEECChHHHHHhCCCCceEEEE
Confidence            467999999999999999998765679999999999999999987531      1             012578999999


Q ss_pred             CccccCCCCH----HHHHHHHHHcccCCcEEEEEEec
Q 019861          238 GAAIHCWSSP----STGVAEISRVLRPGGVFVGTTYI  270 (334)
Q Consensus       238 ~~vl~h~~d~----~~~L~~i~r~LkpgG~lii~~~~  270 (334)
                      .....+.+..    ..++++++++|+|||++++...+
T Consensus       158 d~~~~~~~~~~l~~~~~l~~~~~~L~pgG~lv~~~~~  194 (283)
T 2i7c_A          158 DSSDPIGPAETLFNQNFYEKIYNALKPNGYCVAQCES  194 (283)
T ss_dssp             ECCCTTTGGGGGSSHHHHHHHHHHEEEEEEEEEECCC
T ss_pred             cCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEECCC
Confidence            6443222211    58999999999999999987543

>4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens}

Probab=99.11  E-value=1.6e-10  Score=107.25  Aligned_cols=88  Identities=24%  Similarity=0.403  Sum_probs=70.6

Q ss_pred             CCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCC---------------CCCCCCceEEEe---
Q 019861          176 VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES---------------NFPKDSIDAVHA---  237 (334)
Q Consensus       176 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~---------------~~~~~~fD~V~~---  237 (334)
                      .++++|||||||+|.++..+++.|. .+|+|+|.|+ +++.|++.+....               .+ .+++|+|++   
T Consensus        82 ~~~k~VLDvG~GtGiLs~~Aa~aGA-~~V~ave~s~-~~~~a~~~~~~n~~~~~i~~i~~~~~~~~l-pe~~DvivsE~~  158 (376)
T 4hc4_A           82 LRGKTVLDVGAGTGILSIFCAQAGA-RRVYAVEASA-IWQQAREVVRFNGLEDRVHVLPGPVETVEL-PEQVDAIVSEWM  158 (376)
T ss_dssp             HTTCEEEEETCTTSHHHHHHHHTTC-SEEEEEECST-THHHHHHHHHHTTCTTTEEEEESCTTTCCC-SSCEEEEECCCC
T ss_pred             cCCCEEEEeCCCccHHHHHHHHhCC-CEEEEEeChH-HHHHHHHHHHHcCCCceEEEEeeeeeeecC-CccccEEEeecc
Confidence            3578999999999999999998884 5899999986 7888887655432               23 368999998   


Q ss_pred             CccccCCCCHHHHHHHHHHcccCCcEEEE
Q 019861          238 GAAIHCWSSPSTGVAEISRVLRPGGVFVG  266 (334)
Q Consensus       238 ~~vl~h~~d~~~~L~~i~r~LkpgG~lii  266 (334)
                      ...|.+-.....++....+.|+|||.++-
T Consensus       159 ~~~l~~e~~l~~~l~a~~r~Lkp~G~~iP  187 (376)
T 4hc4_A          159 GYGLLHESMLSSVLHARTKWLKEGGLLLP  187 (376)
T ss_dssp             BTTBTTTCSHHHHHHHHHHHEEEEEEEES
T ss_pred             cccccccchhhhHHHHHHhhCCCCceECC
Confidence            45566666778899999999999998874

>2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1

Probab=99.11  E-value=1.3e-10  Score=100.62  Aligned_cols=101  Identities=15%  Similarity=0.112  Sum_probs=77.4

Q ss_pred             HHHcccCCCCCCcEEEECCCcCHHHHHHHHcCC-CCeEEEEeCCHHHHHHHHHHHhcCCC-----------------CCC
Q 019861          168 LMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGL-FSLVVALDYSENMLKQCYEFVQQESN-----------------FPK  229 (334)
Q Consensus       168 ~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~-~~~v~giD~s~~~~~~a~~~~~~~~~-----------------~~~  229 (334)
                      .+.......++.+|||||||+|.++..+++..+ ..+++++|+++.+++.+++++.....                 +.+
T Consensus        60 ~l~~l~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~~  139 (229)
T 2avd_A           60 LLANLARLIQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELLA  139 (229)
T ss_dssp             HHHHHHHHTTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHH
T ss_pred             HHHHHHHhcCCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCeEEEEEcCHHHHHHHHHh
Confidence            333333334578999999999999999998754 56999999999999999988653210                 111


Q ss_pred             ----CCceEEEeCccccCCCCHHHHHHHHHHcccCCcEEEEEEecc
Q 019861          230 ----DSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIV  271 (334)
Q Consensus       230 ----~~fD~V~~~~vl~h~~d~~~~L~~i~r~LkpgG~lii~~~~~  271 (334)
                          ++||+|++...   ..+...+++++.++|+|||++++.....
T Consensus       140 ~~~~~~~D~v~~d~~---~~~~~~~l~~~~~~L~pgG~lv~~~~~~  182 (229)
T 2avd_A          140 AGEAGTFDVAVVDAD---KENCSAYYERCLQLLRPGGILAVLRVLW  182 (229)
T ss_dssp             TTCTTCEEEEEECSC---STTHHHHHHHHHHHEEEEEEEEEECCSG
T ss_pred             cCCCCCccEEEECCC---HHHHHHHHHHHHHHcCCCeEEEEECCCc
Confidence                68999999754   3456788999999999999999866543

>1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A*

Probab=99.11  E-value=4.8e-10  Score=100.54  Aligned_cols=91  Identities=11%  Similarity=0.112  Sum_probs=71.5

Q ss_pred             CCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcC------------CC------------CC-CCC
Q 019861          177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQE------------SN------------FP-KDS  231 (334)
Q Consensus       177 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~------------~~------------~~-~~~  231 (334)
                      .+.+|||||||+|.++..+++. +..+++++|+++.+++.|++++ ..            .+            ++ +++
T Consensus        75 ~~~~VLdiG~G~G~~~~~l~~~-~~~~v~~vDid~~~i~~ar~~~-~~~~~l~~~~~~~~~~~v~~~~~D~~~~l~~~~~  152 (281)
T 1mjf_A           75 KPKRVLVIGGGDGGTVREVLQH-DVDEVIMVEIDEDVIMVSKDLI-KIDNGLLEAMLNGKHEKAKLTIGDGFEFIKNNRG  152 (281)
T ss_dssp             CCCEEEEEECTTSHHHHHHTTS-CCSEEEEEESCHHHHHHHHHHT-CTTTTHHHHHHTTCCSSEEEEESCHHHHHHHCCC
T ss_pred             CCCeEEEEcCCcCHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHH-hhccccccccccCCCCcEEEEECchHHHhcccCC
Confidence            4679999999999999999988 5679999999999999999887 21            10            00 468


Q ss_pred             ceEEEeCccccCCCC-----HHHHHHHHHHcccCCcEEEEEEec
Q 019861          232 IDAVHAGAAIHCWSS-----PSTGVAEISRVLRPGGVFVGTTYI  270 (334)
Q Consensus       232 fD~V~~~~vl~h~~d-----~~~~L~~i~r~LkpgG~lii~~~~  270 (334)
                      ||+|++.... ++..     ...++++++++|+|||++++....
T Consensus       153 fD~Ii~d~~~-~~~~~~~l~~~~~l~~~~~~L~pgG~lv~~~~~  195 (281)
T 1mjf_A          153 FDVIIADSTD-PVGPAKVLFSEEFYRYVYDALNNPGIYVTQAGS  195 (281)
T ss_dssp             EEEEEEECCC-CC-----TTSHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred             eeEEEECCCC-CCCcchhhhHHHHHHHHHHhcCCCcEEEEEcCC
Confidence            9999986543 2211     257899999999999999997544

>2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A*

Probab=99.10  E-value=7.7e-11  Score=102.98  Aligned_cols=90  Identities=12%  Similarity=0.062  Sum_probs=69.5

Q ss_pred             CCCcEEEECCCcCHHHHHHHHc----CCCCeEEEEeCCHHHHHHHHHHHh------cC-CC-----C-CCCCceEEEeCc
Q 019861          177 LGGNIIDASCGSGLFSRIFAKS----GLFSLVVALDYSENMLKQCYEFVQ------QE-SN-----F-PKDSIDAVHAGA  239 (334)
Q Consensus       177 ~~~~vLDiGcG~G~~~~~l~~~----~~~~~v~giD~s~~~~~~a~~~~~------~~-~~-----~-~~~~fD~V~~~~  239 (334)
                      ++.+|||||||+|..+..+++.    ++..+|+|+|+++.+++.|+....      .+ ..     . .+.+||+|++..
T Consensus        81 ~~~~VLDiG~GtG~~t~~la~~~~~~~~~~~V~gvD~s~~~l~~a~~~~~~v~~~~gD~~~~~~l~~~~~~~fD~I~~d~  160 (236)
T 2bm8_A           81 RPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPASDMENITLHQGDCSDLTTFEHLREMAHPLIFIDN  160 (236)
T ss_dssp             CCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCGGGCTTEEEEECCSSCSGGGGGGSSSCSSEEEEES
T ss_pred             CCCEEEEEeCCCCHHHHHHHHhhhhcCCCCEEEEEeCChHHHHHHhccCCceEEEECcchhHHHHHhhccCCCCEEEECC
Confidence            3579999999999999999886    556799999999999887763110      00 01     1 223799999876


Q ss_pred             cccCCCCHHHHHHHHHH-cccCCcEEEEEEe
Q 019861          240 AIHCWSSPSTGVAEISR-VLRPGGVFVGTTY  269 (334)
Q Consensus       240 vl~h~~d~~~~L~~i~r-~LkpgG~lii~~~  269 (334)
                      .  | .+...+|.++.+ +|+|||++++.+.
T Consensus       161 ~--~-~~~~~~l~~~~r~~LkpGG~lv~~d~  188 (236)
T 2bm8_A          161 A--H-ANTFNIMKWAVDHLLEEGDYFIIEDM  188 (236)
T ss_dssp             S--C-SSHHHHHHHHHHHTCCTTCEEEECSC
T ss_pred             c--h-HhHHHHHHHHHHhhCCCCCEEEEEeC
Confidence            5  4 377889999997 9999999999654

>1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A

Probab=99.10  E-value=4.3e-10  Score=106.85  Aligned_cols=106  Identities=22%  Similarity=0.228  Sum_probs=83.5

Q ss_pred             HHHHHcccCCCCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCC-----------C----CCCC
Q 019861          166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES-----------N----FPKD  230 (334)
Q Consensus       166 ~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~-----------~----~~~~  230 (334)
                      ...+...+...++.+|||+|||+|..+..+++.++...++|+|+++.+++.+++++...+           .    ++++
T Consensus       235 s~~~~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~~~~~l~~~~~~~~~~g~~~~~~~~D~~~~~~~~~~~  314 (429)
T 1sqg_A          235 AQGCMTWLAPQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGMKATVKQGDGRYPSQWCGEQ  314 (429)
T ss_dssp             HHTHHHHHCCCTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTTCCCEEEECCTTCTHHHHTTC
T ss_pred             HHHHHHHcCCCCcCeEEEECCCchHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHHcCCCeEEEeCchhhchhhcccC
Confidence            344455566777899999999999999999998766799999999999999998865321           1    2346


Q ss_pred             CceEEEe------CccccCCCCH----------------HHHHHHHHHcccCCcEEEEEEecc
Q 019861          231 SIDAVHA------GAAIHCWSSP----------------STGVAEISRVLRPGGVFVGTTYIV  271 (334)
Q Consensus       231 ~fD~V~~------~~vl~h~~d~----------------~~~L~~i~r~LkpgG~lii~~~~~  271 (334)
                      +||+|++      ..++++.++.                ..+|+++.++|||||++++++...
T Consensus       315 ~fD~Vl~D~Pcsg~g~~~~~p~~~~~~~~~~~~~l~~~q~~~L~~a~~~LkpGG~lvystcs~  377 (429)
T 1sqg_A          315 QFDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCSV  377 (429)
T ss_dssp             CEEEEEEECCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEESCC
T ss_pred             CCCEEEEeCCCCcccccCCCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCC
Confidence            8999996      2455555553                378999999999999999988654

>2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17

Probab=99.10  E-value=4.9e-10  Score=101.95  Aligned_cols=91  Identities=12%  Similarity=0.130  Sum_probs=69.8

Q ss_pred             CCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcC------C-------------CCCCCCceEEEe
Q 019861          177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQE------S-------------NFPKDSIDAVHA  237 (334)
Q Consensus       177 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~------~-------------~~~~~~fD~V~~  237 (334)
                      .+.+|||||||+|.++..+++..+..+++++|+++.+++.|++++...      .             +..+++||+|++
T Consensus       108 ~~~~VLdIG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~Ar~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii~  187 (314)
T 2b2c_A          108 DPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNHKNEFDVIIT  187 (314)
T ss_dssp             SCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHCTTCEEEEEE
T ss_pred             CCCEEEEEcCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHhccccCCCCEEEEEChHHHHHHhcCCCceEEEE
Confidence            357999999999999999998865679999999999999999987531      1             013578999998


Q ss_pred             CccccCCCCH-----HHHHHHHHHcccCCcEEEEEE
Q 019861          238 GAAIHCWSSP-----STGVAEISRVLRPGGVFVGTT  268 (334)
Q Consensus       238 ~~vl~h~~d~-----~~~L~~i~r~LkpgG~lii~~  268 (334)
                      ... +++..+     ..++++++++|+|||++++..
T Consensus       188 d~~-~~~~~~~~l~t~~~l~~~~~~LkpgG~lv~~~  222 (314)
T 2b2c_A          188 DSS-DPVGPAESLFGQSYYELLRDALKEDGILSSQG  222 (314)
T ss_dssp             CCC--------------HHHHHHHHEEEEEEEEEEC
T ss_pred             cCC-CCCCcchhhhHHHHHHHHHhhcCCCeEEEEEC
Confidence            653 333211     578999999999999999865

>3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum}

Probab=99.09  E-value=3.8e-10  Score=98.55  Aligned_cols=92  Identities=15%  Similarity=0.162  Sum_probs=73.8

Q ss_pred             CCCCcEEEECCCcCHHHHHHHHcCC-CCeEEEEeCCHHHHHHHHHHHhcCC-----------------CC-----CCCCc
Q 019861          176 VLGGNIIDASCGSGLFSRIFAKSGL-FSLVVALDYSENMLKQCYEFVQQES-----------------NF-----PKDSI  232 (334)
Q Consensus       176 ~~~~~vLDiGcG~G~~~~~l~~~~~-~~~v~giD~s~~~~~~a~~~~~~~~-----------------~~-----~~~~f  232 (334)
                      .++.+|||||||+|..+..+++..+ ..+++++|+++.+++.+++++...+                 .+     ++++|
T Consensus        69 ~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~f  148 (237)
T 3c3y_A           69 VNAKKTIEVGVFTGYSLLLTALSIPDDGKITAIDFDREAYEIGLPFIRKAGVEHKINFIESDAMLALDNLLQGQESEGSY  148 (237)
T ss_dssp             TTCCEEEEECCTTSHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSTTCTTCE
T ss_pred             hCCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhccCCCCCc
Confidence            3467999999999999999998754 5799999999999999998765321                 01     25789


Q ss_pred             eEEEeCccccCCCCHHHHHHHHHHcccCCcEEEEEEec
Q 019861          233 DAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYI  270 (334)
Q Consensus       233 D~V~~~~vl~h~~d~~~~L~~i~r~LkpgG~lii~~~~  270 (334)
                      |+|++....   .+...+++++.++|+|||++++....
T Consensus       149 D~I~~d~~~---~~~~~~l~~~~~~L~pGG~lv~d~~~  183 (237)
T 3c3y_A          149 DFGFVDADK---PNYIKYHERLMKLVKVGGIVAYDNTL  183 (237)
T ss_dssp             EEEEECSCG---GGHHHHHHHHHHHEEEEEEEEEECTT
T ss_pred             CEEEECCch---HHHHHHHHHHHHhcCCCeEEEEecCC
Confidence            999987532   35578899999999999999886543

>3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0

Probab=99.09  E-value=2e-10  Score=97.08  Aligned_cols=95  Identities=15%  Similarity=0.196  Sum_probs=63.6

Q ss_pred             CCCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCC-CC----------C---CCCceEEEeCcc
Q 019861          175 PVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES-NF----------P---KDSIDAVHAGAA  240 (334)
Q Consensus       175 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~-~~----------~---~~~fD~V~~~~v  240 (334)
                      ..++.+|||+|||+|.++..+++.+  ..|+|+|+++............+. ..          .   .++||+|++...
T Consensus        23 ~~~g~~VLDlG~G~G~~s~~la~~~--~~V~gvD~~~~~~~~~v~~~~~D~~~~~~~~~~~~~~~~~~~~~~D~Vlsd~~  100 (191)
T 3dou_A           23 VRKGDAVIEIGSSPGGWTQVLNSLA--RKIISIDLQEMEEIAGVRFIRCDIFKETIFDDIDRALREEGIEKVDDVVSDAM  100 (191)
T ss_dssp             SCTTCEEEEESCTTCHHHHHHTTTC--SEEEEEESSCCCCCTTCEEEECCTTSSSHHHHHHHHHHHHTCSSEEEEEECCC
T ss_pred             CCCCCEEEEEeecCCHHHHHHHHcC--CcEEEEeccccccCCCeEEEEccccCHHHHHHHHHHhhcccCCcceEEecCCC
Confidence            3468899999999999999999884  599999999742100000000000 00          0   148999999754


Q ss_pred             ccCCC----C-------HHHHHHHHHHcccCCcEEEEEEecc
Q 019861          241 IHCWS----S-------PSTGVAEISRVLRPGGVFVGTTYIV  271 (334)
Q Consensus       241 l~h~~----d-------~~~~L~~i~r~LkpgG~lii~~~~~  271 (334)
                      .....    |       ...+|+.+.++|||||.+++.....
T Consensus       101 ~~~~g~~~~d~~~~~~l~~~~l~~a~~~LkpGG~lv~k~~~~  142 (191)
T 3dou_A          101 AKVSGIPSRDHAVSYQIGQRVMEIAVRYLRNGGNVLLKQFQG  142 (191)
T ss_dssp             CCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEECS
T ss_pred             cCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEEcCC
Confidence            32211    1       2467889999999999999877653

>1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32

Probab=99.09  E-value=1e-09  Score=92.97  Aligned_cols=82  Identities=15%  Similarity=0.117  Sum_probs=63.1

Q ss_pred             CCCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcC-------CCCCCCCceEEEeCccccCCCC-
Q 019861          175 PVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQE-------SNFPKDSIDAVHAGAAIHCWSS-  246 (334)
Q Consensus       175 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~-------~~~~~~~fD~V~~~~vl~h~~d-  246 (334)
                      ..++.+|||+|||+|.++..++..+ ..+++|+|+++.+++.++++....       ..++ ++||+|+++..++|+.+ 
T Consensus        49 ~~~~~~vlD~gcG~G~~~~~l~~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~d~~~~~-~~~D~v~~~~p~~~~~~~  126 (200)
T 1ne2_A           49 NIGGRSVIDAGTGNGILACGSYLLG-AESVTAFDIDPDAIETAKRNCGGVNFMVADVSEIS-GKYDTWIMNPPFGSVVKH  126 (200)
T ss_dssp             SSBTSEEEEETCTTCHHHHHHHHTT-BSEEEEEESCHHHHHHHHHHCTTSEEEECCGGGCC-CCEEEEEECCCC------
T ss_pred             CCCCCEEEEEeCCccHHHHHHHHcC-CCEEEEEECCHHHHHHHHHhcCCCEEEECcHHHCC-CCeeEEEECCCchhccCc
Confidence            3457899999999999999999884 347999999999999999876411       1233 68999999999998865 


Q ss_pred             -HHHHHHHHHHcc
Q 019861          247 -PSTGVAEISRVL  258 (334)
Q Consensus       247 -~~~~L~~i~r~L  258 (334)
                       ...+++++.++|
T Consensus       127 ~~~~~l~~~~~~~  139 (200)
T 1ne2_A          127 SDRAFIDKAFETS  139 (200)
T ss_dssp             -CHHHHHHHHHHE
T ss_pred             hhHHHHHHHHHhc
Confidence             347899999998

>2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus}

Probab=99.09  E-value=5.7e-11  Score=105.54  Aligned_cols=91  Identities=16%  Similarity=0.147  Sum_probs=67.5

Q ss_pred             CCCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHH----------H---H--h-cCCCCCCCCceEEEeC
Q 019861          175 PVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYE----------F---V--Q-QESNFPKDSIDAVHAG  238 (334)
Q Consensus       175 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~----------~---~--~-~~~~~~~~~fD~V~~~  238 (334)
                      ..++.+|||+|||+|.++..+++.   .+|+|+|+++ ++..+++          .   +  . +...+++++||+|++.
T Consensus        72 ~~~g~~VLDlGcGtG~~s~~la~~---~~V~gvD~s~-m~~~a~~~~~~~~~~~~~v~~~~~~~D~~~l~~~~fD~V~sd  147 (265)
T 2oxt_A           72 VELTGRVVDLGCGRGGWSYYAASR---PHVMDVRAYT-LGVGGHEVPRITESYGWNIVKFKSRVDIHTLPVERTDVIMCD  147 (265)
T ss_dssp             CCCCEEEEEESCTTSHHHHHHHTS---TTEEEEEEEC-CCCSSCCCCCCCCBTTGGGEEEECSCCTTTSCCCCCSEEEEC
T ss_pred             CCCCCEEEEeCcCCCHHHHHHHHc---CcEEEEECch-hhhhhhhhhhhhhccCCCeEEEecccCHhHCCCCCCcEEEEe
Confidence            345789999999999999999887   3899999998 4222211          0   1  0 1113557799999998


Q ss_pred             ccccCCCCHH-------HHHHHHHHcccCCc--EEEEEEec
Q 019861          239 AAIHCWSSPS-------TGVAEISRVLRPGG--VFVGTTYI  270 (334)
Q Consensus       239 ~vl~h~~d~~-------~~L~~i~r~LkpgG--~lii~~~~  270 (334)
                      .+ ++..++.       .+|+.+.++|+|||  .+++.++.
T Consensus       148 ~~-~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~fv~kv~~  187 (265)
T 2oxt_A          148 VG-ESSPKWSVESERTIKILELLEKWKVKNPSADFVVKVLC  187 (265)
T ss_dssp             CC-CCCSCHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEESC
T ss_pred             Cc-ccCCccchhHHHHHHHHHHHHHHhccCCCeEEEEEeCC
Confidence            77 6555542       37899999999999  99997765

>3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A*

Probab=99.09  E-value=1.6e-09  Score=96.58  Aligned_cols=120  Identities=14%  Similarity=0.131  Sum_probs=89.1

Q ss_pred             HHHcccCCCCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCC-------------C-CCCCCce
Q 019861          168 LMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES-------------N-FPKDSID  233 (334)
Q Consensus       168 ~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~-------------~-~~~~~fD  233 (334)
                      .+...+.+  +.+|||+|||+|.++..++..+ ..+|+++|+|+.+++.+++++....             . .+.+.||
T Consensus       118 ri~~~~~~--g~~VlD~~aG~G~~~i~~a~~g-~~~V~avD~np~a~~~~~~N~~~N~v~~~v~~~~~D~~~~~~~~~~D  194 (278)
T 3k6r_A          118 RMAKVAKP--DELVVDMFAGIGHLSLPIAVYG-KAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPGENIAD  194 (278)
T ss_dssp             HHHHHCCT--TCEEEETTCTTTTTTHHHHHHT-CCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCCCSCEE
T ss_pred             HHHHhcCC--CCEEEEecCcCcHHHHHHHHhc-CCeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCcHHHhccccCCC
Confidence            34444444  8899999999999999998887 3589999999999999999876432             1 2357899


Q ss_pred             EEEeCccccCCCCHHHHHHHHHHcccCCcEEEEEEeccCCCCCchHHHHHHHHHhhhhcCccCCCCHHHHHHHHHhCCCc
Q 019861          234 AVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLCRACGLV  313 (334)
Q Consensus       234 ~V~~~~vl~h~~d~~~~L~~i~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~l~~ll~~~Gf~  313 (334)
                      .|++..-    +....+|..+.++|++||++.+.......                    .......+.++++++..|++
T Consensus       195 ~Vi~~~p----~~~~~~l~~a~~~lk~gG~ih~~~~~~e~--------------------~~~~~~~e~i~~~~~~~g~~  250 (278)
T 3k6r_A          195 RILMGYV----VRTHEFIPKALSIAKDGAIIHYHNTVPEK--------------------LMPREPFETFKRITKEYGYD  250 (278)
T ss_dssp             EEEECCC----SSGGGGHHHHHHHEEEEEEEEEEEEEEGG--------------------GTTTTTHHHHHHHHHHTTCE
T ss_pred             EEEECCC----CcHHHHHHHHHHHcCCCCEEEEEeeeccc--------------------ccchhHHHHHHHHHHHcCCc
Confidence            9998632    34456788999999999998876654321                    01112456788889999996


Q ss_pred             E
Q 019861          314 D  314 (334)
Q Consensus       314 ~  314 (334)
                      +
T Consensus       251 v  251 (278)
T 3k6r_A          251 V  251 (278)
T ss_dssp             E
T ss_pred             E
Confidence            5

>2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A*

Probab=99.09  E-value=4.6e-11  Score=106.75  Aligned_cols=91  Identities=20%  Similarity=0.160  Sum_probs=67.5

Q ss_pred             CCCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHH----------Hh-c--C---CCCCCCCceEEEeC
Q 019861          175 PVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEF----------VQ-Q--E---SNFPKDSIDAVHAG  238 (334)
Q Consensus       175 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~----------~~-~--~---~~~~~~~fD~V~~~  238 (334)
                      ..++.+|||+|||+|.++..+++.   .+|+|+|+++ ++..+++.          +. .  .   ..+++++||+|++.
T Consensus        80 ~~~g~~VLDlGcGtG~~s~~la~~---~~V~gVD~s~-m~~~a~~~~~~~~~~~~~v~~~~~~~D~~~l~~~~fD~Vvsd  155 (276)
T 2wa2_A           80 VELKGTVVDLGCGRGSWSYYAASQ---PNVREVKAYT-LGTSGHEKPRLVETFGWNLITFKSKVDVTKMEPFQADTVLCD  155 (276)
T ss_dssp             CCCCEEEEEESCTTCHHHHHHHTS---TTEEEEEEEC-CCCTTSCCCCCCCCTTGGGEEEECSCCGGGCCCCCCSEEEEC
T ss_pred             CCCCCEEEEeccCCCHHHHHHHHc---CCEEEEECch-hhhhhhhchhhhhhcCCCeEEEeccCcHhhCCCCCcCEEEEC
Confidence            346789999999999999999987   3899999998 43322111          00 0  1   12457899999998


Q ss_pred             ccccCCCCHH-------HHHHHHHHcccCCc--EEEEEEec
Q 019861          239 AAIHCWSSPS-------TGVAEISRVLRPGG--VFVGTTYI  270 (334)
Q Consensus       239 ~vl~h~~d~~-------~~L~~i~r~LkpgG--~lii~~~~  270 (334)
                      .+ ++..++.       .+|+++.++|+|||  .+++.++.
T Consensus       156 ~~-~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~~v~~~~~  195 (276)
T 2wa2_A          156 IG-ESNPTAAVEASRTLTVLNVISRWLEYNQGCGFCVKVLN  195 (276)
T ss_dssp             CC-CCCSCHHHHHHHHHHHHHHHHHHHHHSTTCEEEEEESC
T ss_pred             CC-cCCCchhhhHHHHHHHHHHHHHHhccCCCcEEEEEeCC
Confidence            87 5554432       37899999999999  99987765

>2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A

Probab=99.08  E-value=4.4e-10  Score=99.66  Aligned_cols=86  Identities=12%  Similarity=0.076  Sum_probs=70.7

Q ss_pred             CCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhc------CC----------CCCCCCceEEEeCcc
Q 019861          177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQ------ES----------NFPKDSIDAVHAGAA  240 (334)
Q Consensus       177 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~------~~----------~~~~~~fD~V~~~~v  240 (334)
                      .+.+|||||||+|.++..+.+. + .+++++|+++.+++.|++++..      ..          .+. ++||+|++.  
T Consensus        72 ~~~~VL~iG~G~G~~~~~ll~~-~-~~v~~veid~~~i~~ar~~~~~~~~~~~~~rv~~~~~D~~~~~-~~fD~Ii~d--  146 (262)
T 2cmg_A           72 ELKEVLIVDGFDLELAHQLFKY-D-THIDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQLLDLDI-KKYDLIFCL--  146 (262)
T ss_dssp             CCCEEEEESSCCHHHHHHHTTS-S-CEEEEECSCHHHHGGGTTTSTTHHHHHTCTTEEEESSGGGSCC-CCEEEEEES--
T ss_pred             CCCEEEEEeCCcCHHHHHHHhC-C-CEEEEEECCHHHHHHHHHHHHhhccccCCCeEEEEechHHHHH-hhCCEEEEC--
Confidence            3579999999999999999888 5 7999999999999999876532      11          122 679999986  


Q ss_pred             ccCCCCHHHHHHHHHHcccCCcEEEEEEec
Q 019861          241 IHCWSSPSTGVAEISRVLRPGGVFVGTTYI  270 (334)
Q Consensus       241 l~h~~d~~~~L~~i~r~LkpgG~lii~~~~  270 (334)
                         ..+|..++++++++|+|||++++...+
T Consensus       147 ---~~dp~~~~~~~~~~L~pgG~lv~~~~~  173 (262)
T 2cmg_A          147 ---QEPDIHRIDGLKRMLKEDGVFISVAKH  173 (262)
T ss_dssp             ---SCCCHHHHHHHHTTEEEEEEEEEEEEC
T ss_pred             ---CCChHHHHHHHHHhcCCCcEEEEEcCC
Confidence               367888999999999999999986543

>1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32

Probab=99.08  E-value=2.2e-09  Score=91.30  Aligned_cols=112  Identities=15%  Similarity=0.125  Sum_probs=81.9

Q ss_pred             CCCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCC-----------CCCCCCceEEEeCccccC
Q 019861          175 PVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES-----------NFPKDSIDAVHAGAAIHC  243 (334)
Q Consensus       175 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~-----------~~~~~~fD~V~~~~vl~h  243 (334)
                      ..++.+|||+|||+|.++..++..+. .+++|+|+++.+++.++++.....           .+ +++||+|+++-.+++
T Consensus        47 ~~~~~~vlD~g~G~G~~~~~l~~~~~-~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~-~~~~D~v~~~~p~~~  124 (207)
T 1wy7_A           47 DIEGKVVADLGAGTGVLSYGALLLGA-KEVICVEVDKEAVDVLIENLGEFKGKFKVFIGDVSEF-NSRVDIVIMNPPFGS  124 (207)
T ss_dssp             SSTTCEEEEETCTTCHHHHHHHHTTC-SEEEEEESCHHHHHHHHHHTGGGTTSEEEEESCGGGC-CCCCSEEEECCCCSS
T ss_pred             CCCcCEEEEeeCCCCHHHHHHHHcCC-CEEEEEECCHHHHHHHHHHHHHcCCCEEEEECchHHc-CCCCCEEEEcCCCcc
Confidence            44678999999999999999998863 489999999999999998865321           12 258999999887776


Q ss_pred             CC--CHHHHHHHHHHcccCCcEEEEEEeccCCCCCchHHHHHHHHHhhhhcCccCCCCHHHHHHHHHhCCCcEEE
Q 019861          244 WS--SPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLCRACGLVDFK  316 (334)
Q Consensus       244 ~~--d~~~~L~~i~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~l~~ll~~~Gf~~v~  316 (334)
                      ..  ....+++++.++|  ||.+++.....        .                  +.+.+.+++++.||++..
T Consensus       125 ~~~~~~~~~l~~~~~~l--~~~~~~~~~~~--------~------------------~~~~~~~~l~~~g~~~~~  171 (207)
T 1wy7_A          125 QRKHADRPFLLKAFEIS--DVVYSIHLAKP--------E------------------VRRFIEKFSWEHGFVVTH  171 (207)
T ss_dssp             SSTTTTHHHHHHHHHHC--SEEEEEEECCH--------H------------------HHHHHHHHHHHTTEEEEE
T ss_pred             ccCCchHHHHHHHHHhc--CcEEEEEeCCc--------C------------------CHHHHHHHHHHCCCeEEE
Confidence            64  3357889999998  55444331110        0                  234567788889986644

>1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24

Probab=99.07  E-value=9.2e-11  Score=105.44  Aligned_cols=100  Identities=13%  Similarity=0.089  Sum_probs=73.6

Q ss_pred             HHHHHHHcccCCCCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCC-------------CCCCC
Q 019861          164 KEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES-------------NFPKD  230 (334)
Q Consensus       164 ~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~-------------~~~~~  230 (334)
                      ...+.+.+.+...++.+|||||||+|.++..+++.+.  +++|+|+++.+++.++++.....             .++..
T Consensus        15 ~i~~~i~~~~~~~~~~~VLDiG~G~G~lt~~L~~~~~--~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~D~~~~~~~   92 (285)
T 1zq9_A           15 LIINSIIDKAALRPTDVVLEVGPGTGNMTVKLLEKAK--KVVACELDPRLVAELHKRVQGTPVASKLQVLVGDVLKTDLP   92 (285)
T ss_dssp             HHHHHHHHHTCCCTTCEEEEECCTTSTTHHHHHHHSS--EEEEEESCHHHHHHHHHHHTTSTTGGGEEEEESCTTTSCCC
T ss_pred             HHHHHHHHhcCCCCCCEEEEEcCcccHHHHHHHhhCC--EEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcceecccch
Confidence            4455666667777788999999999999999999876  99999999999999998764211             12334


Q ss_pred             CceEEEeC-----------ccccCCCCHHHHH----HHH--HHcccCCcEEE
Q 019861          231 SIDAVHAG-----------AAIHCWSSPSTGV----AEI--SRVLRPGGVFV  265 (334)
Q Consensus       231 ~fD~V~~~-----------~vl~h~~d~~~~L----~~i--~r~LkpgG~li  265 (334)
                      .||+|+++           .+|+|.+++..++    +++  +++|+|||.++
T Consensus        93 ~fD~vv~nlpy~~~~~~~~~~l~~~~~~~~~~~m~qkEva~r~vlkPGg~~y  144 (285)
T 1zq9_A           93 FFDTCVANLPYQISSPFVFKLLLHRPFFRCAILMFQREFALRLVAKPGDKLY  144 (285)
T ss_dssp             CCSEEEEECCGGGHHHHHHHHHHCSSCCSEEEEEEEHHHHHHHHCCTTCTTC
T ss_pred             hhcEEEEecCcccchHHHHHHHhcCcchhhhhhhhhHHHHHHHhcCCCCccc
Confidence            79999995           4566655543211    333  46899999653

>1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A

Probab=99.06  E-value=4.7e-10  Score=102.89  Aligned_cols=94  Identities=18%  Similarity=0.203  Sum_probs=73.3

Q ss_pred             CCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhc------CC--------------CCCCCCceEEE
Q 019861          177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQ------ES--------------NFPKDSIDAVH  236 (334)
Q Consensus       177 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~------~~--------------~~~~~~fD~V~  236 (334)
                      .+.+|||||||+|.++..+++..+..+++++|+++.+++.|++++..      ..              ..++++||+|+
T Consensus       120 ~~~~VLdIG~G~G~~a~~la~~~~~~~V~~VDis~~~l~~Ar~~~~~~~~gl~~~rv~~~~~D~~~~l~~~~~~~fDlIi  199 (334)
T 1xj5_A          120 NPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGSYDAVI  199 (334)
T ss_dssp             CCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCTTCEEEEE
T ss_pred             CCCEEEEECCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEECCHHHHHHhccCCCccEEE
Confidence            46799999999999999999886567999999999999999987642      11              12457899999


Q ss_pred             eCcccc-CCCC---HHHHHHHHHHcccCCcEEEEEEec
Q 019861          237 AGAAIH-CWSS---PSTGVAEISRVLRPGGVFVGTTYI  270 (334)
Q Consensus       237 ~~~vl~-h~~d---~~~~L~~i~r~LkpgG~lii~~~~  270 (334)
                      +..... +..+   ...++++++++|+|||++++...+
T Consensus       200 ~d~~~p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~  237 (334)
T 1xj5_A          200 VDSSDPIGPAKELFEKPFFQSVARALRPGGVVCTQAES  237 (334)
T ss_dssp             ECCCCTTSGGGGGGSHHHHHHHHHHEEEEEEEEEECCC
T ss_pred             ECCCCccCcchhhhHHHHHHHHHHhcCCCcEEEEecCC
Confidence            865421 1111   368899999999999999986443

>3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A*

Probab=99.06  E-value=1.1e-10  Score=108.12  Aligned_cols=105  Identities=16%  Similarity=0.114  Sum_probs=72.6

Q ss_pred             HHHHHHHcccCCCCCCcEEEECCC------cCHHHHHHHH-cCCCCeEEEEeCCHHHHHHHHHHHh---cC---CCCC--
Q 019861          164 KEFELMKGYLKPVLGGNIIDASCG------SGLFSRIFAK-SGLFSLVVALDYSENMLKQCYEFVQ---QE---SNFP--  228 (334)
Q Consensus       164 ~~~~~l~~~l~~~~~~~vLDiGcG------~G~~~~~l~~-~~~~~~v~giD~s~~~~~~a~~~~~---~~---~~~~--  228 (334)
                      ...+.+...+.. ++.+|||||||      +|..+..+.+ ..+.++|+|+|+++.|... ..++.   .+   .++.  
T Consensus       204 ~~Ye~lL~~l~~-~~~rVLDIGCG~~~~~~TGG~Sl~la~~~fP~a~V~GVDiSp~m~~~-~~rI~fv~GDa~dlpf~~~  281 (419)
T 3sso_A          204 PHYDRHFRDYRN-QQVRVLEIGVGGYKHPEWGGGSLRMWKSFFPRGQIYGLDIMDKSHVD-ELRIRTIQGDQNDAEFLDR  281 (419)
T ss_dssp             HHHHHHHGGGTT-SCCEEEEECCSCTTCSSCCCHHHHHHHHHCTTCEEEEEESSCCGGGC-BTTEEEEECCTTCHHHHHH
T ss_pred             HHHHHHHHhhcC-CCCEEEEEecCCCcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHhhc-CCCcEEEEecccccchhhh
Confidence            344454444433 36899999999      5555555544 4567899999999997310 00000   00   0123  


Q ss_pred             ----CCCceEEEeCccccCCCCHHHHHHHHHHcccCCcEEEEEEecc
Q 019861          229 ----KDSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIV  271 (334)
Q Consensus       229 ----~~~fD~V~~~~vl~h~~d~~~~L~~i~r~LkpgG~lii~~~~~  271 (334)
                          +++||+|++.. .+++.++..+|++++++|||||++++.+...
T Consensus       282 l~~~d~sFDlVisdg-sH~~~d~~~aL~el~rvLKPGGvlVi~Dl~t  327 (419)
T 3sso_A          282 IARRYGPFDIVIDDG-SHINAHVRTSFAALFPHVRPGGLYVIEDMWT  327 (419)
T ss_dssp             HHHHHCCEEEEEECS-CCCHHHHHHHHHHHGGGEEEEEEEEEECGGG
T ss_pred             hhcccCCccEEEECC-cccchhHHHHHHHHHHhcCCCeEEEEEeccc
Confidence                57899999875 4677788899999999999999999988763

>2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638}

Probab=99.05  E-value=3.3e-09  Score=98.91  Aligned_cols=92  Identities=15%  Similarity=0.030  Sum_probs=72.1

Q ss_pred             CCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCC-------------CCC---CCCceEEEeCc
Q 019861          176 VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES-------------NFP---KDSIDAVHAGA  239 (334)
Q Consensus       176 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~-------------~~~---~~~fD~V~~~~  239 (334)
                      .++.+|||+| |+|.++..++..++..+++|+|+++.+++.|+++....+             .++   +++||+|+++.
T Consensus       171 ~~~~~VLDlG-G~G~~~~~la~~~~~~~v~~vDi~~~~l~~a~~~~~~~g~~~v~~~~~D~~~~l~~~~~~~fD~Vi~~~  249 (373)
T 2qm3_A          171 LENKDIFVLG-DDDLTSIALMLSGLPKRIAVLDIDERLTKFIEKAANEIGYEDIEIFTFDLRKPLPDYALHKFDTFITDP  249 (373)
T ss_dssp             STTCEEEEES-CTTCHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHHHTCCCEEEECCCTTSCCCTTTSSCBSEEEECC
T ss_pred             CCCCEEEEEC-CCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCEEEEEChhhhhchhhccCCccEEEECC
Confidence            3578999999 999999999988766799999999999999998764211             133   35899999986


Q ss_pred             cccCCCCHHHHHHHHHHcccCCcEE-EEEEe
Q 019861          240 AIHCWSSPSTGVAEISRVLRPGGVF-VGTTY  269 (334)
Q Consensus       240 vl~h~~d~~~~L~~i~r~LkpgG~l-ii~~~  269 (334)
                      .+++. ....+++++.++|+|||++ ++...
T Consensus       250 p~~~~-~~~~~l~~~~~~LkpgG~~~~~~~~  279 (373)
T 2qm3_A          250 PETLE-AIRAFVGRGIATLKGPRCAGYFGIT  279 (373)
T ss_dssp             CSSHH-HHHHHHHHHHHTBCSTTCEEEEEEC
T ss_pred             CCchH-HHHHHHHHHHHHcccCCeEEEEEEe
Confidence            55433 2478899999999999954 55443

>2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A*

Probab=99.04  E-value=3.8e-10  Score=102.28  Aligned_cols=94  Identities=15%  Similarity=0.136  Sum_probs=72.1

Q ss_pred             CCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhc------CC-------------CCCCCCceEEEe
Q 019861          177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQ------ES-------------NFPKDSIDAVHA  237 (334)
Q Consensus       177 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~------~~-------------~~~~~~fD~V~~  237 (334)
                      .+.+|||||||+|.++..+++..+..+++++|+++.+++.|++++..      ..             +..+++||+|++
T Consensus        95 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~~fD~Ii~  174 (304)
T 2o07_A           95 NPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQDAFDVIIT  174 (304)
T ss_dssp             SCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTCSSCEEEEEE
T ss_pred             CCCEEEEECCCchHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHhhCCCCceEEEE
Confidence            46799999999999999999886567999999999999999987642      11             123578999998


Q ss_pred             CccccCCC----CHHHHHHHHHHcccCCcEEEEEEec
Q 019861          238 GAAIHCWS----SPSTGVAEISRVLRPGGVFVGTTYI  270 (334)
Q Consensus       238 ~~vl~h~~----d~~~~L~~i~r~LkpgG~lii~~~~  270 (334)
                      .......+    ....++++++++|+|||++++...+
T Consensus       175 d~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~  211 (304)
T 2o07_A          175 DSSDPMGPAESLFKESYYQLMKTALKEDGVLCCQGEC  211 (304)
T ss_dssp             ECC-----------CHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             CCCCCCCcchhhhHHHHHHHHHhccCCCeEEEEecCC
Confidence            64432211    1246899999999999999997654

>3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A*

Probab=99.02  E-value=5.9e-10  Score=106.26  Aligned_cols=104  Identities=20%  Similarity=0.175  Sum_probs=79.0

Q ss_pred             HHHcccCCCCCCcEEEECCCcCHHHHHHHHcCC-CCeEEEEeCCHHHHHHHHHHHhcCC--------------CCCCCCc
Q 019861          168 LMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGL-FSLVVALDYSENMLKQCYEFVQQES--------------NFPKDSI  232 (334)
Q Consensus       168 ~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~-~~~v~giD~s~~~~~~a~~~~~~~~--------------~~~~~~f  232 (334)
                      .+...+...++.+|||+|||+|..+..++.... .+.|+++|+++.+++.+++++...+              ...+++|
T Consensus        92 l~a~~L~~~~g~~VLDlgaGpG~kt~~LA~~~~~~g~V~AvDis~~~l~~a~~n~~r~G~~v~~~~~Da~~l~~~~~~~F  171 (464)
T 3m6w_A           92 AVGVLLDPKPGERVLDLAAAPGGKTTHLAARMGGKGLLLANEVDGKRVRGLLENVERWGAPLAVTQAPPRALAEAFGTYF  171 (464)
T ss_dssp             HHHHHHCCCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHCCCCEEECSCHHHHHHHHCSCE
T ss_pred             HHHHhcCcCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCeEEEEECCHHHhhhhccccC
Confidence            334455666789999999999999999998743 3689999999999999998865321              0125789


Q ss_pred             eEEEeC------ccccCCCCH----------------HHHHHHHHHcccCCcEEEEEEecc
Q 019861          233 DAVHAG------AAIHCWSSP----------------STGVAEISRVLRPGGVFVGTTYIV  271 (334)
Q Consensus       233 D~V~~~------~vl~h~~d~----------------~~~L~~i~r~LkpgG~lii~~~~~  271 (334)
                      |+|++.      .++.+-++.                ..+|+++.++|||||+++.++-..
T Consensus       172 D~Il~D~PcSg~G~~rr~pd~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvysTCs~  232 (464)
T 3m6w_A          172 HRVLLDAPCSGEGMFRKDREAARHWGPSAPKRMAEVQKALLAQASRLLGPGGVLVYSTCTF  232 (464)
T ss_dssp             EEEEEECCCCCGGGTTTCTTSGGGCCTTHHHHHHHHHHHHHHHHHTTEEEEEEEEEEESCC
T ss_pred             CEEEECCCcCCccccccChHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeccC
Confidence            999962      334433332                578999999999999999887654

>3b5i_A S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like protein; sabath family, indole-3-acetic acid, S-AD methionine; HET: SAH; 2.75A {Arabidopsis thaliana}

Probab=99.02  E-value=5e-09  Score=97.10  Aligned_cols=140  Identities=13%  Similarity=0.067  Sum_probs=94.4

Q ss_pred             CCcEEEECCCcCHHHHHHH--------Hc-------CCCCeEEEEeCCHHHHHHHHHHHhc-------------------
Q 019861          178 GGNIIDASCGSGLFSRIFA--------KS-------GLFSLVVALDYSENMLKQCYEFVQQ-------------------  223 (334)
Q Consensus       178 ~~~vLDiGcG~G~~~~~l~--------~~-------~~~~~v~giD~s~~~~~~a~~~~~~-------------------  223 (334)
                      ..+|+|+|||+|..+..+.        +.       .+..++..-|+-.+.....-+.+..                   
T Consensus        53 ~~~IaDlGCssG~Nt~~~v~~ii~~i~~~~~~~~~~~pe~~v~~nDLp~NDFn~lF~~L~~~~~~~~~~~~~~~~~~~~~  132 (374)
T 3b5i_A           53 PFTAVDLGCSSGANTVHIIDFIVKHISKRFDAAGIDPPEFTAFFSDLPSNDFNTLFQLLPPLVSNTCMEECLAADGNRSY  132 (374)
T ss_dssp             CEEEEEETCCSSHHHHHHHHHHHHHHHHHHHHTTCCCCCEEEEEEECTTSCHHHHHHHSCCBCCCC--CCC---CCCBCS
T ss_pred             ceEEEecCCCCChhHHHHHHHHHHHHHHHHhhcCCCCCceeEEecCCCccchHHHHhhhhhhhhhcchhhhccccCCCce
Confidence            4689999999999887762        12       1556888889877654433332221                   


Q ss_pred             ----------CCCCCCCCceEEEeCccccCCCC--------------------------------------HHHHHHHHH
Q 019861          224 ----------ESNFPKDSIDAVHAGAAIHCWSS--------------------------------------PSTGVAEIS  255 (334)
Q Consensus       224 ----------~~~~~~~~fD~V~~~~vl~h~~d--------------------------------------~~~~L~~i~  255 (334)
                                ...||+++||+|+++.+||++.+                                      ...+|+..+
T Consensus       133 f~~gvpgSFy~rlfP~~S~d~v~Ss~aLHWls~~p~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Qf~~D~~~fL~~ra  212 (374)
T 3b5i_A          133 FVAGVPGSFYRRLFPARTIDFFHSAFSLHWLSQVPESVTDRRSAAYNRGRVFIHGAGEKTTTAYKRQFQADLAEFLRARA  212 (374)
T ss_dssp             EEEEEESCTTSCCSCTTCEEEEEEESCTTBCSSCCGGGGCTTSTTCCTTTSSSSSCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEecChhhhcccCCCcceEEEEecceeeeeccCchhhhccccccccCCceEeCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence                      02478999999999999999872                                      234688999


Q ss_pred             HcccCCcEEEEEEeccCCCCCch---------HHHHHHHHHh-----------hhhcCccCCCCHHHHHHHHH-hCCCcE
Q 019861          256 RVLRPGGVFVGTTYIVDGPFNLI---------PFSRLLRQNM-----------MQISGSYTFLSEREIEDLCR-ACGLVD  314 (334)
Q Consensus       256 r~LkpgG~lii~~~~~~~~~~~~---------~~~~~~~~~~-----------~~~~~~~~~~t~~~l~~ll~-~~Gf~~  314 (334)
                      +.|+|||+++++...........         ..+...+..+           ....-...+.+.++++++++ +.||++
T Consensus       213 ~eL~pGG~mvl~~~gr~~~~~~~~~~~~~~~~~~l~~al~~l~~eG~i~~e~~d~f~~P~y~ps~~E~~~~l~~~~~F~I  292 (374)
T 3b5i_A          213 AEVKRGGAMFLVCLGRTSVDPTDQGGAGLLFGTHFQDAWDDLVREGLVAAEKRDGFNIPVYAPSLQDFKEVVDANGSFAI  292 (374)
T ss_dssp             HHEEEEEEEEEEEEECCCSSTTCCHHHHHHHSSHHHHHHHHTTSSSSSCHHHHSSCCCCBCCCCHHHHHHHHHHHCSEEE
T ss_pred             HHhCCCCEEEEEEecCCCCccccccchhhHHHHHHHHHHHHHHHhCCcchhhcccCCccccCCCHHHHHHHHHhcCCcEE
Confidence            99999999999999876432111         0111111111           00122345679999999998 599987


Q ss_pred             EEE
Q 019861          315 FKC  317 (334)
Q Consensus       315 v~~  317 (334)
                      ...
T Consensus       293 ~~l  295 (374)
T 3b5i_A          293 DKL  295 (374)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            664

>2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A*

Probab=98.98  E-value=2.6e-09  Score=100.98  Aligned_cols=114  Identities=18%  Similarity=0.318  Sum_probs=81.5

Q ss_pred             cCCCCcHHHHHHHHcccCCCCCCcEEEECCCcCHHHHHHHHcC-CCCeEEEEeCCHHHHHHHHHHHh---cC--CCCCCC
Q 019861          157 GGFPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSG-LFSLVVALDYSENMLKQCYEFVQ---QE--SNFPKD  230 (334)
Q Consensus       157 ~~~~~~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~~v~giD~s~~~~~~a~~~~~---~~--~~~~~~  230 (334)
                      +.+..+....+.+.+.+...++.+|||+|||+|.++..+++.. +..+++|+|+++.+++.|. ...   .+  ...+++
T Consensus        19 g~~~TP~~l~~~~~~~~~~~~~~~vLD~gcGtG~~~~~~~~~~~~~~~i~gvDi~~~~~~~a~-~~~~~~~D~~~~~~~~   97 (421)
T 2ih2_A           19 GRVETPPEVVDFMVSLAEAPRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLPP-WAEGILADFLLWEPGE   97 (421)
T ss_dssp             --CCCCHHHHHHHHHHCCCCTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCCT-TEEEEESCGGGCCCSS
T ss_pred             ceEeCCHHHHHHHHHhhccCCCCEEEECCCCChHHHHHHHHHhCCCCeEEEEECCHHHHHhCC-CCcEEeCChhhcCccC
Confidence            4556677788888888876556799999999999999998763 3469999999999987761 110   00  012346


Q ss_pred             CceEEEeC---cccc-------CCCCH-------------------HHHHHHHHHcccCCcEEEEEEecc
Q 019861          231 SIDAVHAG---AAIH-------CWSSP-------------------STGVAEISRVLRPGGVFVGTTYIV  271 (334)
Q Consensus       231 ~fD~V~~~---~vl~-------h~~d~-------------------~~~L~~i~r~LkpgG~lii~~~~~  271 (334)
                      .||+|+++   ....       |+.+.                   ..+++.+.++|+|||++++..+..
T Consensus        98 ~fD~Ii~NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~~G~~~~i~p~~  167 (421)
T 2ih2_A           98 AFDLILGNPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVFVVPAT  167 (421)
T ss_dssp             CEEEEEECCCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEEEEEGG
T ss_pred             CCCEEEECcCccCcccccccccccCHHHHHHHHHhhhcccCCccHHHHHHHHHHHHhCCCCEEEEEEChH
Confidence            89999995   1111       12211                   256899999999999999999863

>4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus}

Probab=98.97  E-value=2.4e-09  Score=100.32  Aligned_cols=100  Identities=16%  Similarity=0.133  Sum_probs=74.8

Q ss_pred             HHHHcccCCCCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCC---------------CCCCCC
Q 019861          167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES---------------NFPKDS  231 (334)
Q Consensus       167 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~---------------~~~~~~  231 (334)
                      ..+..++.  ++.+|||+|||+|.++..++..+.  .|+++|+|+.+++.+++++....               .+ .+.
T Consensus       206 ~~l~~~~~--~g~~VLDlg~GtG~~sl~~a~~ga--~V~avDis~~al~~a~~n~~~ng~~~~~~~~D~~~~l~~~-~~~  280 (393)
T 4dmg_A          206 RLFEAMVR--PGERVLDVYSYVGGFALRAARKGA--YALAVDKDLEALGVLDQAALRLGLRVDIRHGEALPTLRGL-EGP  280 (393)
T ss_dssp             HHHHTTCC--TTCEEEEESCTTTHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHHTCCCEEEESCHHHHHHTC-CCC
T ss_pred             HHHHHHhc--CCCeEEEcccchhHHHHHHHHcCC--eEEEEECCHHHHHHHHHHHHHhCCCCcEEEccHHHHHHHh-cCC
Confidence            34444433  478999999999999999999876  69999999999999998864321               12 334


Q ss_pred             ceEEEeCccccC---------CCCHHHHHHHHHHcccCCcEEEEEEecc
Q 019861          232 IDAVHAGAAIHC---------WSSPSTGVAEISRVLRPGGVFVGTTYIV  271 (334)
Q Consensus       232 fD~V~~~~vl~h---------~~d~~~~L~~i~r~LkpgG~lii~~~~~  271 (334)
                      ||+|++.--...         ..+...+++.+.++|+|||++++.+...
T Consensus       281 fD~Ii~dpP~f~~~~~~~~~~~~~~~~ll~~a~~~LkpGG~Lv~~s~s~  329 (393)
T 4dmg_A          281 FHHVLLDPPTLVKRPEELPAMKRHLVDLVREALRLLAEEGFLWLSSCSY  329 (393)
T ss_dssp             EEEEEECCCCCCSSGGGHHHHHHHHHHHHHHHHHTEEEEEEEEEEECCT
T ss_pred             CCEEEECCCcCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCC
Confidence            999998632211         1233578899999999999999777654

>3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium}

Probab=98.97  E-value=8.9e-10  Score=104.88  Aligned_cols=104  Identities=13%  Similarity=0.063  Sum_probs=77.1

Q ss_pred             HHHcccCCCCCCcEEEECCCcCHHHHHHHHcC-CCCeEEEEeCCHHHHHHHHHHHhcCC---------------CCCCCC
Q 019861          168 LMKGYLKPVLGGNIIDASCGSGLFSRIFAKSG-LFSLVVALDYSENMLKQCYEFVQQES---------------NFPKDS  231 (334)
Q Consensus       168 ~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~~v~giD~s~~~~~~a~~~~~~~~---------------~~~~~~  231 (334)
                      .+...+...++.+|||+|||+|..+..++... ..+.|+++|+++.+++.+++++...+               ...+++
T Consensus        96 l~~~~L~~~~g~~VLDlcaGpGgkt~~lA~~~~~~g~V~AvDis~~rl~~~~~n~~r~g~~nv~v~~~Da~~l~~~~~~~  175 (456)
T 3m4x_A           96 IVGTAAAAKPGEKVLDLCAAPGGKSTQLAAQMKGKGLLVTNEIFPKRAKILSENIERWGVSNAIVTNHAPAELVPHFSGF  175 (456)
T ss_dssp             HHHHHHCCCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHHTCSSEEEECCCHHHHHHHHTTC
T ss_pred             HHHHHcCCCCCCEEEEECCCcCHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhhhcccc
Confidence            34445566778999999999999999988763 23699999999999999998765322               012478


Q ss_pred             ceEEEeCc------cccCCCCH----------------HHHHHHHHHcccCCcEEEEEEecc
Q 019861          232 IDAVHAGA------AIHCWSSP----------------STGVAEISRVLRPGGVFVGTTYIV  271 (334)
Q Consensus       232 fD~V~~~~------vl~h~~d~----------------~~~L~~i~r~LkpgG~lii~~~~~  271 (334)
                      ||+|++..      ++.+-++.                ..+|+++.++|||||+++.++-..
T Consensus       176 FD~Il~DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~  237 (456)
T 3m4x_A          176 FDRIVVDAPCSGEGMFRKDPNAIKEWTEESPLYCQKRQQEILSSAIKMLKNKGQLIYSTCTF  237 (456)
T ss_dssp             EEEEEEECCCCCGGGTTTCHHHHHHCCTTHHHHHHHHHHHHHHHHHHTEEEEEEEEEEESCC
T ss_pred             CCEEEECCCCCCccccccCHHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEEeec
Confidence            99999742      23221111                267999999999999999887654

>2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli}

Probab=98.94  E-value=4.6e-09  Score=100.85  Aligned_cols=103  Identities=16%  Similarity=0.162  Sum_probs=77.7

Q ss_pred             HcccCCC--CCCcEEEECCCcCHHHHHHHHcC-CCCeEEEEeCCHHHHHHHHHHHhcCC------------CC---CCCC
Q 019861          170 KGYLKPV--LGGNIIDASCGSGLFSRIFAKSG-LFSLVVALDYSENMLKQCYEFVQQES------------NF---PKDS  231 (334)
Q Consensus       170 ~~~l~~~--~~~~vLDiGcG~G~~~~~l~~~~-~~~~v~giD~s~~~~~~a~~~~~~~~------------~~---~~~~  231 (334)
                      ...+...  ++.+|||+|||+|..+..++... ....|+++|+++.+++.+++++...+            .+   .+++
T Consensus       108 ~~~L~~~~~~g~~VLDl~aGpG~kt~~lA~~~~~~g~V~avDis~~~l~~~~~n~~r~g~~nv~~~~~D~~~~~~~~~~~  187 (479)
T 2frx_A          108 VAALFADGNAPQRVMDVAAAPGSKTTQISARMNNEGAILANEFSASRVKVLHANISRCGISNVALTHFDGRVFGAAVPEM  187 (479)
T ss_dssp             HHHHTTTTCCCSEEEESSCTTSHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCCSTTHHHHSTTC
T ss_pred             HHHhCcccCCCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCCHHHhhhhcccc
Confidence            3445555  78899999999999999998874 24699999999999999998865321            11   3468


Q ss_pred             ceEEEeC------ccccCCCC----------------HHHHHHHHHHcccCCcEEEEEEeccC
Q 019861          232 IDAVHAG------AAIHCWSS----------------PSTGVAEISRVLRPGGVFVGTTYIVD  272 (334)
Q Consensus       232 fD~V~~~------~vl~h~~d----------------~~~~L~~i~r~LkpgG~lii~~~~~~  272 (334)
                      ||.|++.      .++.+.++                ...+|+++.++|||||++++++-...
T Consensus       188 fD~Il~D~PcSg~G~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~LvysTcs~~  250 (479)
T 2frx_A          188 FDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPGGTLVYSTCTLN  250 (479)
T ss_dssp             EEEEEEECCCCCGGGGGTCTTSSSSCCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCCS
T ss_pred             CCEEEECCCcCCcccccCCHHHHhhcCHhHHHHHHHHHHHHHHHHHHhcCCCCEEEEecccCC
Confidence            9999982      33443332                13689999999999999999887653

>2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A*

Probab=98.93  E-value=3.5e-10  Score=102.50  Aligned_cols=93  Identities=12%  Similarity=0.060  Sum_probs=64.6

Q ss_pred             CCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeC----CHHHHHHHH-HHH--h--------cCCCCCCCCceEEEeCcc
Q 019861          176 VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDY----SENMLKQCY-EFV--Q--------QESNFPKDSIDAVHAGAA  240 (334)
Q Consensus       176 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~----s~~~~~~a~-~~~--~--------~~~~~~~~~fD~V~~~~v  240 (334)
                      .++.+|||+|||+|.++..+++.   .+|+|+|+    ++.+++... +..  .        +...++.++||+|++...
T Consensus        81 ~~g~~VLDlGcG~G~~s~~la~~---~~V~gvD~~~~~~~~~~~~~~~~~~~~~~v~~~~~~D~~~l~~~~fD~V~sd~~  157 (305)
T 2p41_A           81 TPEGKVVDLGCGRGGWSYYCGGL---KNVREVKGLTKGGPGHEEPIPMSTYGWNLVRLQSGVDVFFIPPERCDTLLCDIG  157 (305)
T ss_dssp             CCCEEEEEETCTTSHHHHHHHTS---TTEEEEEEECCCSTTSCCCCCCCSTTGGGEEEECSCCTTTSCCCCCSEEEECCC
T ss_pred             CCCCEEEEEcCCCCHHHHHHHhc---CCEEEEeccccCchhHHHHHHhhhcCCCCeEEEeccccccCCcCCCCEEEECCc
Confidence            45789999999999999999987   27999998    453332111 000  0        112345678999999776


Q ss_pred             cc---CCCCHH---HHHHHHHHcccCCcEEEEEEecc
Q 019861          241 IH---CWSSPS---TGVAEISRVLRPGGVFVGTTYIV  271 (334)
Q Consensus       241 l~---h~~d~~---~~L~~i~r~LkpgG~lii~~~~~  271 (334)
                      +.   +..+..   .+|..+.++|||||.+++.++..
T Consensus       158 ~~~g~~~~d~~~~l~~L~~~~~~LkpGG~~v~kv~~~  194 (305)
T 2p41_A          158 ESSPNPTVEAGRTLRVLNLVENWLSNNTQFCVKVLNP  194 (305)
T ss_dssp             CCCSSHHHHHHHHHHHHHHHHHHCCTTCEEEEEESCC
T ss_pred             cccCcchhhHHHHHHHHHHHHHHhCCCCEEEEEeCCC
Confidence            53   222222   47899999999999999876643

>2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A*

Probab=98.91  E-value=3.9e-09  Score=98.82  Aligned_cols=95  Identities=14%  Similarity=0.135  Sum_probs=71.7

Q ss_pred             CCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCC----C-----------C-----CCCCceEE
Q 019861          176 VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES----N-----------F-----PKDSIDAV  235 (334)
Q Consensus       176 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~----~-----------~-----~~~~fD~V  235 (334)
                      .++.+|||+|||+|.++..++..+ ..+|+|+|+|+.+++.|+++.....    .           +     ...+||+|
T Consensus       211 ~~~~~VLDl~cGtG~~sl~la~~g-a~~V~~vD~s~~al~~A~~N~~~n~~~~~~v~~~~~D~~~~l~~~~~~~~~fD~I  289 (385)
T 2b78_A          211 AAGKTVLNLFSYTAAFSVAAAMGG-AMATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDYFKYARRHHLTYDII  289 (385)
T ss_dssp             TBTCEEEEETCTTTHHHHHHHHTT-BSEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHHHHHHHHTTCCEEEE
T ss_pred             cCCCeEEEEeeccCHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHHhCCCccEE
Confidence            347899999999999999999865 2489999999999999998865332    1           0     13489999


Q ss_pred             EeCccc-----cCCCCH----HHHHHHHHHcccCCcEEEEEEecc
Q 019861          236 HAGAAI-----HCWSSP----STGVAEISRVLRPGGVFVGTTYIV  271 (334)
Q Consensus       236 ~~~~vl-----~h~~d~----~~~L~~i~r~LkpgG~lii~~~~~  271 (334)
                      ++.--.     .+..+.    ..+++.+.++|+|||.++++....
T Consensus       290 i~DPP~~~~~~~~~~~~~~~~~~ll~~~~~~L~pgG~l~~~~~~~  334 (385)
T 2b78_A          290 IIDPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIASTNAA  334 (385)
T ss_dssp             EECCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEECCT
T ss_pred             EECCCCCCCChhhHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCC
Confidence            984222     233333    456788899999999999887653

>1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A

Probab=98.91  E-value=9.4e-10  Score=96.55  Aligned_cols=100  Identities=14%  Similarity=0.185  Sum_probs=70.0

Q ss_pred             HHHHHHHHcccCCCCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCC------------CCCC-
Q 019861          163 EKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES------------NFPK-  229 (334)
Q Consensus       163 ~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~------------~~~~-  229 (334)
                      ....+.+.+.+...++.+|||||||+|.++..+++.+.  +++|+|+++.+++.+++++....            ++++ 
T Consensus        16 ~~~~~~i~~~~~~~~~~~VLDiG~G~G~lt~~l~~~~~--~v~~vD~~~~~~~~a~~~~~~~~~v~~~~~D~~~~~~~~~   93 (244)
T 1qam_A           16 KHNIDKIMTNIRLNEHDNIFEIGSGKGHFTLELVQRCN--FVTAIEIDHKLCKTTENKLVDHDNFQVLNKDILQFKFPKN   93 (244)
T ss_dssp             HHHHHHHHTTCCCCTTCEEEEECCTTSHHHHHHHHHSS--EEEEECSCHHHHHHHHHHTTTCCSEEEECCCGGGCCCCSS
T ss_pred             HHHHHHHHHhCCCCCCCEEEEEeCCchHHHHHHHHcCC--eEEEEECCHHHHHHHHHhhccCCCeEEEEChHHhCCcccC
Confidence            44556777777777788999999999999999999874  99999999999999998864321            3332 


Q ss_pred             CCceEEEe----------CccccCCCCHHHHH----HHHHHcccCCcEE
Q 019861          230 DSIDAVHA----------GAAIHCWSSPSTGV----AEISRVLRPGGVF  264 (334)
Q Consensus       230 ~~fD~V~~----------~~vl~h~~d~~~~L----~~i~r~LkpgG~l  264 (334)
                      ..|++|..          ...++|...+..++    +.+.|+|+++|.+
T Consensus        94 ~~~~vv~nlPy~~~~~~l~~~l~~~~~~~~~lm~q~e~a~rll~~~G~l  142 (244)
T 1qam_A           94 QSYKIFGNIPYNISTDIIRKIVFDSIADEIYLIVEYGFAKRLLNTKRSL  142 (244)
T ss_dssp             CCCEEEEECCGGGHHHHHHHHHHSCCCSEEEEEEEHHHHHHHTCTTSHH
T ss_pred             CCeEEEEeCCcccCHHHHHHHHhcCCCCeEEEEEEHHHHHHHhcCCcch
Confidence            34543321          23444544444444    4477778877743

>2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51

Probab=98.88  E-value=3.7e-09  Score=99.33  Aligned_cols=94  Identities=16%  Similarity=0.149  Sum_probs=74.2

Q ss_pred             CCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCC----------C----C-----CCCCceEEEe
Q 019861          177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES----------N----F-----PKDSIDAVHA  237 (334)
Q Consensus       177 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~----------~----~-----~~~~fD~V~~  237 (334)
                      ++.+|||+|||+|.++..++..+ ..+|+|+|+++.+++.+++++....          .    .     .+++||+|++
T Consensus       217 ~~~~VLDl~~G~G~~~~~la~~g-~~~v~~vD~s~~~l~~a~~n~~~n~~~~~v~~~~~d~~~~~~~~~~~~~~fD~Vi~  295 (396)
T 2as0_A          217 PGDRVLDVFTYTGGFAIHAAIAG-ADEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEMEKLQKKGEKFDIVVL  295 (396)
T ss_dssp             TTCEEEETTCTTTHHHHHHHHTT-CSEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHTTCCEEEEEE
T ss_pred             CCCeEEEecCCCCHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEECCHHHHHHHHHhhCCCCCEEEE
Confidence            57899999999999999999875 3599999999999999998865322          0    0     1468999999


Q ss_pred             Cc---------cccCCCCHHHHHHHHHHcccCCcEEEEEEecc
Q 019861          238 GA---------AIHCWSSPSTGVAEISRVLRPGGVFVGTTYIV  271 (334)
Q Consensus       238 ~~---------vl~h~~d~~~~L~~i~r~LkpgG~lii~~~~~  271 (334)
                      .-         +.++..+...++.++.++|+|||.+++.+.+.
T Consensus       296 dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~  338 (396)
T 2as0_A          296 DPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSCSQ  338 (396)
T ss_dssp             CCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEECCT
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEECCC
Confidence            53         22222445678999999999999999888764

>3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12}

Probab=98.87  E-value=1.1e-08  Score=96.13  Aligned_cols=94  Identities=15%  Similarity=0.156  Sum_probs=74.7

Q ss_pred             CCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCC----C-----------CC-----CCCceEEE
Q 019861          177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES----N-----------FP-----KDSIDAVH  236 (334)
Q Consensus       177 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~----~-----------~~-----~~~fD~V~  236 (334)
                      ++.+|||+|||+|.++..++..+ ..+|+|+|+++.+++.|++++....    .           .+     ..+||+|+
T Consensus       220 ~~~~VLDl~cG~G~~sl~la~~g-~~~V~~vD~s~~al~~a~~n~~~ngl~~~~v~~~~~D~~~~~~~~~~~~~~fD~Ii  298 (396)
T 3c0k_A          220 ENKRVLNCFSYTGGFAVSALMGG-CSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIV  298 (396)
T ss_dssp             TTCEEEEESCTTCSHHHHHHHTT-CSEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESCHHHHHHHHHHTTCCEEEEE
T ss_pred             CCCeEEEeeccCCHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHhcCCCCCEEE
Confidence            47899999999999999999986 4599999999999999998765221    0           01     35899999


Q ss_pred             eCc---------cccCCCCHHHHHHHHHHcccCCcEEEEEEecc
Q 019861          237 AGA---------AIHCWSSPSTGVAEISRVLRPGGVFVGTTYIV  271 (334)
Q Consensus       237 ~~~---------vl~h~~d~~~~L~~i~r~LkpgG~lii~~~~~  271 (334)
                      +.-         +.++..+...++.++.+.|+|||+++++....
T Consensus       299 ~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  342 (396)
T 3c0k_A          299 MDPPKFVENKSQLMGACRGYKDINMLAIQLLNEGGILLTFSCSG  342 (396)
T ss_dssp             ECCSSTTTCSSSSSCCCTHHHHHHHHHHHTEEEEEEEEEEECCT
T ss_pred             ECCCCCCCChhHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCC
Confidence            962         33334566788999999999999999977553

>2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45

Probab=98.86  E-value=7.6e-09  Score=98.73  Aligned_cols=131  Identities=16%  Similarity=0.153  Sum_probs=94.4

Q ss_pred             chhHHHHHHhHHHhh-----HhcCCCCcHHHHHHHHcccCCCCCCcEEEECCCcCHHHHHHHHcC-------------CC
Q 019861          140 PFMSFIYERGWRQNF-----VWGGFPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSG-------------LF  201 (334)
Q Consensus       140 ~~~~~~~~~~w~~~~-----~~~~~~~~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~-------------~~  201 (334)
                      ++++..|+....+..     ..+.+..|....+.+.+.+.+.++.+|||.|||+|.++..+.+..             ..
T Consensus       129 d~~G~~yE~ll~~~~~~~~~~~G~fyTP~~v~~~mv~~l~~~~~~~VlDpacGsG~fl~~~~~~l~~~~~~~~~~~~~~~  208 (445)
T 2okc_A          129 DVKGAIYESILEKNGQDKKSGAGQYFTPRPLIQAMVDCINPQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRD  208 (445)
T ss_dssp             HHHHHHHHHHHHHHHTCTTTCCGGGCCCHHHHHHHHHHHCCCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHhhccccCCcccCcHHHHHHHHHHhCCCCCCEEeccCCCcchHHHHHHHHHHHhcCCHHHHHhhcC
Confidence            445555655433322     123466788888888888888778899999999999998887642             12


Q ss_pred             CeEEEEeCCHHHHHHHHHHHhcCC---------------CCCCCCceEEEeCccccCCCC-----------------HHH
Q 019861          202 SLVVALDYSENMLKQCYEFVQQES---------------NFPKDSIDAVHAGAAIHCWSS-----------------PST  249 (334)
Q Consensus       202 ~~v~giD~s~~~~~~a~~~~~~~~---------------~~~~~~fD~V~~~~vl~h~~d-----------------~~~  249 (334)
                      ..++|+|+++.+++.|+.++...+               ....++||+|+++--+.+...                 ...
T Consensus       209 ~~i~G~Ei~~~~~~lA~~nl~l~g~~~~~~~i~~gD~l~~~~~~~fD~Iv~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~  288 (445)
T 2okc_A          209 KALHGVDNTPLVVTLASMNLYLHGIGTDRSPIVCEDSLEKEPSTLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLN  288 (445)
T ss_dssp             TTEEEEESCHHHHHHHHHHHHHTTCCSSCCSEEECCTTTSCCSSCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHH
T ss_pred             eEEEEEeCCHHHHHHHHHHHHHhCCCcCCCCEeeCCCCCCcccCCcCEEEECCCCCCcccccchhhHhhcCCCCcchHHH
Confidence            479999999999999987653211               011348999999754443221                 147


Q ss_pred             HHHHHHHcccCCcEEEEEEec
Q 019861          250 GVAEISRVLRPGGVFVGTTYI  270 (334)
Q Consensus       250 ~L~~i~r~LkpgG~lii~~~~  270 (334)
                      +++.+.+.|+|||++.+..|.
T Consensus       289 fl~~~~~~Lk~gG~~a~V~p~  309 (445)
T 2okc_A          289 FLQHMMLMLKTGGRAAVVLPD  309 (445)
T ss_dssp             HHHHHHHHEEEEEEEEEEEEH
T ss_pred             HHHHHHHHhccCCEEEEEECC
Confidence            899999999999999998886

>1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A*

Probab=98.86  E-value=2.7e-09  Score=99.84  Aligned_cols=93  Identities=18%  Similarity=0.188  Sum_probs=72.7

Q ss_pred             CCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCCC-------------C-----CCCCceEEEeC
Q 019861          177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESN-------------F-----PKDSIDAVHAG  238 (334)
Q Consensus       177 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~-------------~-----~~~~fD~V~~~  238 (334)
                      ++.+|||+|||+|.++..++...  .+|+|+|+++.+++.|++++.....             .     .+++||+|++.
T Consensus       209 ~~~~VLDlg~G~G~~~~~la~~~--~~v~~vD~s~~~~~~a~~n~~~n~~~~~~~~~~d~~~~~~~~~~~~~~fD~Ii~d  286 (382)
T 1wxx_A          209 RGERALDVFSYAGGFALHLALGF--REVVAVDSSAEALRRAEENARLNGLGNVRVLEANAFDLLRRLEKEGERFDLVVLD  286 (382)
T ss_dssp             CEEEEEEETCTTTHHHHHHHHHE--EEEEEEESCHHHHHHHHHHHHHTTCTTEEEEESCHHHHHHHHHHTTCCEEEEEEC
T ss_pred             CCCeEEEeeeccCHHHHHHHHhC--CEEEEEECCHHHHHHHHHHHHHcCCCCceEEECCHHHHHHHHHhcCCCeeEEEEC
Confidence            57899999999999999999873  4999999999999999988654320             0     14689999984


Q ss_pred             cc---------ccCCCCHHHHHHHHHHcccCCcEEEEEEecc
Q 019861          239 AA---------IHCWSSPSTGVAEISRVLRPGGVFVGTTYIV  271 (334)
Q Consensus       239 ~v---------l~h~~d~~~~L~~i~r~LkpgG~lii~~~~~  271 (334)
                      --         .....+...++.++.++|+|||.+++.+...
T Consensus       287 pP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  328 (382)
T 1wxx_A          287 PPAFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATASCSH  328 (382)
T ss_dssp             CCCSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEECCT
T ss_pred             CCCCCCChhHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCC
Confidence            21         1122334678999999999999999987654

>2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A*

Probab=98.85  E-value=1.5e-09  Score=97.30  Aligned_cols=116  Identities=13%  Similarity=0.017  Sum_probs=75.4

Q ss_pred             ccCCCCCCcEEEECCCc------CHHHHHHHHc-CCCCeEEEEeCCHHHHHHHHHH-HhcC---CCCCCCCceEEEeCcc
Q 019861          172 YLKPVLGGNIIDASCGS------GLFSRIFAKS-GLFSLVVALDYSENMLKQCYEF-VQQE---SNFPKDSIDAVHAGAA  240 (334)
Q Consensus       172 ~l~~~~~~~vLDiGcG~------G~~~~~l~~~-~~~~~v~giD~s~~~~~~a~~~-~~~~---~~~~~~~fD~V~~~~v  240 (334)
                      .+...++.+|||+|||+      |.  ..+++. ++..+|+|+|+++. +..+ +. ...+   .++ .++||+|++...
T Consensus        58 ~l~l~~g~~VLDLGcGsg~~~GpGs--~~~a~~~~~~~~V~gvDis~~-v~~v-~~~i~gD~~~~~~-~~~fD~Vvsn~~  132 (290)
T 2xyq_A           58 TLAVPYNMRVIHFGAGSDKGVAPGT--AVLRQWLPTGTLLVDSDLNDF-VSDA-DSTLIGDCATVHT-ANKWDLIISDMY  132 (290)
T ss_dssp             CCCCCTTCEEEEESCCCTTSBCHHH--HHHHHHSCTTCEEEEEESSCC-BCSS-SEEEESCGGGCCC-SSCEEEEEECCC
T ss_pred             hcCCCCCCEEEEeCCCCCCCCCcHH--HHHHHHcCCCCEEEEEECCCC-CCCC-EEEEECccccCCc-cCcccEEEEcCC
Confidence            34456688999999944      66  334443 33569999999998 2100 00 1111   122 368999999643


Q ss_pred             ccC--------C---CCHHHHHHHHHHcccCCcEEEEEEeccCCCCCchHHHHHHHHHhhhhcCccCCCCHHHHHHHHHh
Q 019861          241 IHC--------W---SSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLCRA  309 (334)
Q Consensus       241 l~h--------~---~d~~~~L~~i~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~l~~ll~~  309 (334)
                      .+.        .   .....+++++.++|||||++++.++...                          ..+++.+++++
T Consensus       133 ~~~~g~~~~d~~~~~~l~~~~l~~a~r~LkpGG~~v~~~~~~~--------------------------~~~~l~~~l~~  186 (290)
T 2xyq_A          133 DPRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVKITEHS--------------------------WNADLYKLMGH  186 (290)
T ss_dssp             CCC---CCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEEECSSS--------------------------CCHHHHHHHTT
T ss_pred             ccccccccccccchHHHHHHHHHHHHHhcCCCcEEEEEEeccC--------------------------CHHHHHHHHHH
Confidence            221        1   1124789999999999999999765421                          22478888999


Q ss_pred             CCCcEEEEe
Q 019861          310 CGLVDFKCT  318 (334)
Q Consensus       310 ~Gf~~v~~~  318 (334)
                      .||..++..
T Consensus       187 ~GF~~v~~~  195 (290)
T 2xyq_A          187 FSWWTAFVT  195 (290)
T ss_dssp             EEEEEEEEE
T ss_pred             cCCcEEEEE
Confidence            999877654

>2efj_A 3,7-dimethylxanthine methyltransferase; SAM-dependant methyltransferase, SAH, theobromine; HET: SAH 37T; 2.00A {Coffea canephora} PDB: 2eg5_A*

Probab=98.85  E-value=1.5e-08  Score=94.01  Aligned_cols=140  Identities=14%  Similarity=0.074  Sum_probs=92.5

Q ss_pred             CCcEEEECCCcCHHHHHHHHc-----------------CCCCeEEEEeCC-----------HHHHHHHHHHHhc------
Q 019861          178 GGNIIDASCGSGLFSRIFAKS-----------------GLFSLVVALDYS-----------ENMLKQCYEFVQQ------  223 (334)
Q Consensus       178 ~~~vLDiGcG~G~~~~~l~~~-----------------~~~~~v~giD~s-----------~~~~~~a~~~~~~------  223 (334)
                      ..+|+|+||++|..+..+...                 .|..+|+.-|+-           +.+.+.+++....      
T Consensus        53 ~~~IaDlGCssG~NT~~~v~~ii~~i~~~~~~~~~~~~~pe~~v~~nDLp~NDFN~lF~~L~~~~~~~~~~~g~~~~~~f  132 (384)
T 2efj_A           53 CFKVGDLGCASGPNTFSTVRDIVQSIDKVGQEKKNELERPTIQIFLNDLFQNDFNSVFKLLPSFYRNLEKENGRKIGSCL  132 (384)
T ss_dssp             EEEEEEETCCSSHHHHHHHHHHHHHHTCC----------CEEEEEEECCTTSCHHHHHHHHHHHHHHHHHHTCCCTTSEE
T ss_pred             ceEEEecCCCCCchHHHHHHHHHHHHHHHhhhcccCCCCCceEEEecCCCccchHHHHhhhhhhHhhhhhhccCCCCceE
Confidence            468999999999988777554                 244577888876           3333333222111      


Q ss_pred             ---------CCCCCCCCceEEEeCccccCCCCHH---------------------------------------HHHHHHH
Q 019861          224 ---------ESNFPKDSIDAVHAGAAIHCWSSPS---------------------------------------TGVAEIS  255 (334)
Q Consensus       224 ---------~~~~~~~~fD~V~~~~vl~h~~d~~---------------------------------------~~L~~i~  255 (334)
                               ...||++++|+|+++.+||++.+..                                       .+|+..+
T Consensus       133 ~~gvpgSFy~rlfp~~S~d~v~Ss~aLHWls~~p~~l~~~~s~~~nkg~i~i~~~sp~~v~~ay~~Qf~~D~~~FL~~Ra  212 (384)
T 2efj_A          133 IGAMPGSFYSRLFPEESMHFLHSCYCLHWLSQVPSGLVTELGISVNKGCIYSSKASRPPIQKAYLDQFTKDFTTFLRIHS  212 (384)
T ss_dssp             EEECCSCTTSCCSCTTCEEEEEEESCTTBCSSSCCC------CCCCTTCSSSCTTSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEecchhhhhccCCCCceEEEEecceeeecCCCchhhhccccccccCCceEecCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence                     1258899999999999999986432                                       1266669


Q ss_pred             HcccCCcEEEEEEeccCCC--CCc-hHHHHHHHHH-----------hhhhcCccCCCCHHHHHHHHHhCC-CcEEEE
Q 019861          256 RVLRPGGVFVGTTYIVDGP--FNL-IPFSRLLRQN-----------MMQISGSYTFLSEREIEDLCRACG-LVDFKC  317 (334)
Q Consensus       256 r~LkpgG~lii~~~~~~~~--~~~-~~~~~~~~~~-----------~~~~~~~~~~~t~~~l~~ll~~~G-f~~v~~  317 (334)
                      +.|+|||+++++.......  ... ...+...+..           +..+.....+.+.++++.++++.| |++...
T Consensus       213 ~eL~pGG~mvl~~~gr~~~~~~~~~~~~l~~al~~lv~eGli~~ek~dsf~~P~y~ps~~E~~~~le~~g~F~i~~l  289 (384)
T 2efj_A          213 EELISRGRMLLTFICKEDEFDHPNSMDLLEMSINDLVIEGHLEEEKLDSFNVPIYAPSTEEVKRIVEEEGSFEILYL  289 (384)
T ss_dssp             HHEEEEEEEEEEEECCCTTTCCCCHHHHHHHHHHHHHHHTSSCHHHHHTCCCSBCCCCHHHHHHHHHHHCSEEEEEE
T ss_pred             HHhccCCeEEEEEecCCCcccCcccHHHHHHHHHHHHHhCCcchhhhcccCCcccCCCHHHHHHHHHHcCCceEEEE
Confidence            9999999999999987654  211 0022222211           111222455689999999999975 776653

>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*

Probab=98.83  E-value=7.3e-09  Score=104.01  Aligned_cols=93  Identities=14%  Similarity=0.162  Sum_probs=74.4

Q ss_pred             CCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCCC-----------------CCCCCceEEEeCc
Q 019861          177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESN-----------------FPKDSIDAVHAGA  239 (334)
Q Consensus       177 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~-----------------~~~~~fD~V~~~~  239 (334)
                      ++.+|||+|||+|.++..++..+. .+|+++|+|+.+++.+++++.....                 ...++||+|++.-
T Consensus       539 ~g~~VLDlg~GtG~~sl~aa~~ga-~~V~aVD~s~~al~~a~~N~~~ngl~~~~v~~i~~D~~~~l~~~~~~fD~Ii~DP  617 (703)
T 3v97_A          539 KGKDFLNLFSYTGSATVHAGLGGA-RSTTTVDMSRTYLEWAERNLRLNGLTGRAHRLIQADCLAWLREANEQFDLIFIDP  617 (703)
T ss_dssp             TTCEEEEESCTTCHHHHHHHHTTC-SEEEEEESCHHHHHHHHHHHHHTTCCSTTEEEEESCHHHHHHHCCCCEEEEEECC
T ss_pred             CCCcEEEeeechhHHHHHHHHCCC-CEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHhcCCCccEEEECC
Confidence            478999999999999999988764 5799999999999999998654321                 1246899999853


Q ss_pred             -----------cccCCCCHHHHHHHHHHcccCCcEEEEEEec
Q 019861          240 -----------AIHCWSSPSTGVAEISRVLRPGGVFVGTTYI  270 (334)
Q Consensus       240 -----------vl~h~~d~~~~L~~i~r~LkpgG~lii~~~~  270 (334)
                                 ++++..+...++..+.++|+|||+++++...
T Consensus       618 P~f~~~~~~~~~~~~~~~~~~ll~~a~~~LkpgG~L~~s~~~  659 (703)
T 3v97_A          618 PTFSNSKRMEDAFDVQRDHLALMKDLKRLLRAGGTIMFSNNK  659 (703)
T ss_dssp             CSBC-------CCBHHHHHHHHHHHHHHHEEEEEEEEEEECC
T ss_pred             ccccCCccchhHHHHHHHHHHHHHHHHHhcCCCcEEEEEECC
Confidence                       2333445667899999999999999987765

>1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A*

Probab=98.78  E-value=5.1e-08  Score=92.61  Aligned_cols=98  Identities=16%  Similarity=0.207  Sum_probs=70.6

Q ss_pred             HHHHHHcccCCCCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCC------------------C
Q 019861          165 EFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES------------------N  226 (334)
Q Consensus       165 ~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~------------------~  226 (334)
                      +.+.+.+++...++.+|||+|||+|.++..++..+.  +|+|+|+|+.+++.|+++.....                  +
T Consensus       274 l~~~~~~~l~~~~~~~VLDlgcG~G~~~~~la~~~~--~V~gvD~s~~al~~A~~n~~~~~~~~v~f~~~d~~~~l~~~~  351 (433)
T 1uwv_A          274 MVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQAA--SVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQP  351 (433)
T ss_dssp             HHHHHHHHHTCCTTCEEEEESCTTTTTHHHHHTTSS--EEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCTTSCCSSSG
T ss_pred             HHHHHHHhhcCCCCCEEEECCCCCCHHHHHHHhhCC--EEEEEeCCHHHHHHHHHHHHHcCCCceEEEECCHHHHhhhhh
Confidence            445556666666678999999999999999998854  99999999999999998764321                  1


Q ss_pred             CCCCCceEEEeCccccCCCCHHHHHHHHHHcccCCcEEEEEE
Q 019861          227 FPKDSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTT  268 (334)
Q Consensus       227 ~~~~~fD~V~~~~vl~h~~d~~~~L~~i~r~LkpgG~lii~~  268 (334)
                      +++++||+|++.---..   ...+++.+.+ ++|++.++++.
T Consensus       352 ~~~~~fD~Vv~dPPr~g---~~~~~~~l~~-~~p~~ivyvsc  389 (433)
T 1uwv_A          352 WAKNGFDKVLLDPARAG---AAGVMQQIIK-LEPIRIVYVSC  389 (433)
T ss_dssp             GGTTCCSEEEECCCTTC---CHHHHHHHHH-HCCSEEEEEES
T ss_pred             hhcCCCCEEEECCCCcc---HHHHHHHHHh-cCCCeEEEEEC
Confidence            23468999998422111   1245555544 78988888743

>1m6e_X S-adenosyl-L-methionnine:salicylic acid carboxyl methyltransferase; rossmann fold, protein-small molecule complex; HET: SAH SAL; 3.00A {Clarkia breweri} SCOP: c.66.1.35

Probab=98.77  E-value=2.2e-08  Score=92.16  Aligned_cols=139  Identities=15%  Similarity=0.109  Sum_probs=97.6

Q ss_pred             CCcEEEECCCcCHHHHHHHHc----------------CCCCeEEEEeCCHHHHHHHHHHHhc----C-------------
Q 019861          178 GGNIIDASCGSGLFSRIFAKS----------------GLFSLVVALDYSENMLKQCYEFVQQ----E-------------  224 (334)
Q Consensus       178 ~~~vLDiGcG~G~~~~~l~~~----------------~~~~~v~giD~s~~~~~~a~~~~~~----~-------------  224 (334)
                      ..+|+|+||++|..+..+...                .|..+|+..|+..+.....-+.+..    .             
T Consensus        52 ~~~IaDlGCs~G~Nt~~~v~~ii~~i~~~~~~~~~~~~pe~~v~~nDLp~NDFntlF~~L~~~~~~~~~~f~~gvpgSFy  131 (359)
T 1m6e_X           52 RLAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIENDVDGVCFINGVPGSFY  131 (359)
T ss_dssp             EECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSCSCTTCEEEEEEESCSS
T ss_pred             ceEEEecCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCCceEEEecCCCchHHHHHHHhcchhcccCCCEEEEecchhhh
Confidence            468999999999776554333                3446788999988877777665542    1             


Q ss_pred             -CCCCCCCceEEEeCccccCCCCH---------------------------------HHHHHHHHHcccCCcEEEEEEec
Q 019861          225 -SNFPKDSIDAVHAGAAIHCWSSP---------------------------------STGVAEISRVLRPGGVFVGTTYI  270 (334)
Q Consensus       225 -~~~~~~~fD~V~~~~vl~h~~d~---------------------------------~~~L~~i~r~LkpgG~lii~~~~  270 (334)
                       ..||++++|+|+++.+||++.+.                                 ..+|+..++.|+|||++++....
T Consensus       132 ~rlfp~~S~d~v~Ss~aLHWls~~p~~l~~nkg~i~~~~~~p~~v~~ay~~Qf~~D~~~FL~~Ra~EL~pGG~mvl~~~g  211 (359)
T 1m6e_X          132 GRLFPRNTLHFIHSSYSLMWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVPGGRMVLTILG  211 (359)
T ss_dssp             SCCSCTTCBSCEEEESCTTBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBCTTCEEEEEEEE
T ss_pred             hccCCCCceEEEEehhhhhhcccCchhhhccCCceEecCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEEEec
Confidence             25889999999999999998642                                 13488999999999999999998


Q ss_pred             cCCCCC-------chHHHHHHHHHhh-----------hhcCccCCCCHHHHHHHHHhCCC-cEEE
Q 019861          271 VDGPFN-------LIPFSRLLRQNMM-----------QISGSYTFLSEREIEDLCRACGL-VDFK  316 (334)
Q Consensus       271 ~~~~~~-------~~~~~~~~~~~~~-----------~~~~~~~~~t~~~l~~ll~~~Gf-~~v~  316 (334)
                      ......       ....+...+..+.           .+.....+.+.++++.++++.|. ++..
T Consensus       212 r~~~~~~~~~~~~~~~~l~~al~~mv~eGli~~ek~d~f~~P~y~ps~~E~~~~ie~~G~F~i~~  276 (359)
T 1m6e_X          212 RRSEDRASTECCLIWQLLAMALNQMVSEGLIEEEKMDKFNIPQYTPSPTEVEAEILKEGSFLIDH  276 (359)
T ss_dssp             CSSSSSSSTTTSTTTHHHHHHHHHHHHTTCSCCSTTGGGCCCCBCCCSHHHHHHHHHTTTBCCEE
T ss_pred             CCCCCccccchHHHHHHHHHHHHHHHHccccchhhhhccCCCccCCCHHHHHHHHHHcCCceEEE
Confidence            765321       1222333332111           11224457789999999999965 5554

>1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24

Probab=98.77  E-value=4.7e-11  Score=104.93  Aligned_cols=101  Identities=12%  Similarity=0.115  Sum_probs=72.7

Q ss_pred             HHHHHcccCCCCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcC------------CCCC-CCCc
Q 019861          166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQE------------SNFP-KDSI  232 (334)
Q Consensus       166 ~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~------------~~~~-~~~f  232 (334)
                      .+.+.+.+...++.+|||||||+|.++..+++.+.  +++|+|+++.+++.++++....            .+++ +++|
T Consensus        18 ~~~i~~~~~~~~~~~VLDiG~G~G~~~~~l~~~~~--~v~~id~~~~~~~~a~~~~~~~~~v~~~~~D~~~~~~~~~~~f   95 (245)
T 1yub_A           18 LNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKISK--QVTSIELDSHLFNLSSEKLKLNTRVTLIHQDILQFQFPNKQRY   95 (245)
T ss_dssp             HHHHHHHCCCCSSEEEEECSCCCSSCSHHHHHHSS--EEEESSSSCSSSSSSSCTTTTCSEEEECCSCCTTTTCCCSSEE
T ss_pred             HHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHhCC--eEEEEECCHHHHHHHHHHhccCCceEEEECChhhcCcccCCCc
Confidence            34556666666788999999999999999999874  9999999999998887765311            1233 2567


Q ss_pred             eEEEeC-----------ccccCCCCHHHHH----HHHHHcccCCcEEEEEEe
Q 019861          233 DAVHAG-----------AAIHCWSSPSTGV----AEISRVLRPGGVFVGTTY  269 (334)
Q Consensus       233 D~V~~~-----------~vl~h~~d~~~~L----~~i~r~LkpgG~lii~~~  269 (334)
                       .|+++           .+++|..++..++    +.+.++|+|||.+.+...
T Consensus        96 -~vv~n~Py~~~~~~~~~~~~~~~~~~~~lm~q~e~a~rll~~~G~l~v~~~  146 (245)
T 1yub_A           96 -KIVGNIPYHLSTQIIKKVVFESRASDIYLIVEEGFYKRTLDIHRTLGLLLH  146 (245)
T ss_dssp             -EEEEECCSSSCHHHHHHHHHHCCCEEEEEEEESSHHHHHHCGGGSHHHHTT
T ss_pred             -EEEEeCCccccHHHHHHHHhCCCCCeEEEEeeHHHHHHHhCCCCchhhhhe
Confidence             55553           2244445555556    779999999998766443

>2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum}

Probab=98.76  E-value=7.4e-09  Score=93.58  Aligned_cols=96  Identities=17%  Similarity=0.153  Sum_probs=69.2

Q ss_pred             HHHHHHHcccCCCCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCC------------CCCCCC
Q 019861          164 KEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES------------NFPKDS  231 (334)
Q Consensus       164 ~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~------------~~~~~~  231 (334)
                      ...+.+.+.+...++.+|||||||+|.++..+++.+.  +|+|+|+++.+++.++++.....            .++..+
T Consensus        29 ~i~~~i~~~~~~~~~~~VLDiG~G~G~lt~~La~~~~--~v~~vDi~~~~~~~a~~~~~~~~~~~v~~~~~D~~~~~~~~  106 (299)
T 2h1r_A           29 GILDKIIYAAKIKSSDIVLEIGCGTGNLTVKLLPLAK--KVITIDIDSRMISEVKKRCLYEGYNNLEVYEGDAIKTVFPK  106 (299)
T ss_dssp             HHHHHHHHHHCCCTTCEEEEECCTTSTTHHHHTTTSS--EEEEECSCHHHHHHHHHHHHHTTCCCEEC----CCSSCCCC
T ss_pred             HHHHHHHHhcCCCCcCEEEEEcCcCcHHHHHHHhcCC--EEEEEECCHHHHHHHHHHHHHcCCCceEEEECchhhCCccc
Confidence            3445566666666788999999999999999998865  99999999999999998764211            233458


Q ss_pred             ceEEEeCccccCCCCHH--HHH---------------HHHHHcccCCc
Q 019861          232 IDAVHAGAAIHCWSSPS--TGV---------------AEISRVLRPGG  262 (334)
Q Consensus       232 fD~V~~~~vl~h~~d~~--~~L---------------~~i~r~LkpgG  262 (334)
                      ||+|+++-.. ++..+.  .+|               +.+.|+++++|
T Consensus       107 ~D~Vv~n~py-~~~~~~~~~ll~~~~~~~~~~l~~Q~e~a~rlla~~G  153 (299)
T 2h1r_A          107 FDVCTANIPY-KISSPLIFKLISHRPLFKCAVLMFQKEFAERMLANVG  153 (299)
T ss_dssp             CSEEEEECCG-GGHHHHHHHHHHCSSCCSEEEEEEEHHHHHHHTCCTT
T ss_pred             CCEEEEcCCc-ccccHHHHHHHhcCCccceeeehHHHHHHHHHhcCCC
Confidence            9999986432 333331  222               34668888877

>2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A*

Probab=98.74  E-value=7e-08  Score=88.57  Aligned_cols=87  Identities=16%  Similarity=0.143  Sum_probs=69.4

Q ss_pred             CCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCC-------------CCCCCCceEEEeCccccC
Q 019861          177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES-------------NFPKDSIDAVHAGAAIHC  243 (334)
Q Consensus       177 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~-------------~~~~~~fD~V~~~~vl~h  243 (334)
                      ++.+|||+|||+|.++.. +. + ..+|+|+|+|+.+++.+++++....             .+. ++||+|++.--   
T Consensus       195 ~~~~VLDlg~G~G~~~l~-a~-~-~~~V~~vD~s~~ai~~a~~n~~~n~l~~~v~~~~~D~~~~~-~~fD~Vi~dpP---  267 (336)
T 2yx1_A          195 LNDVVVDMFAGVGPFSIA-CK-N-AKKIYAIDINPHAIELLKKNIKLNKLEHKIIPILSDVREVD-VKGNRVIMNLP---  267 (336)
T ss_dssp             TTCEEEETTCTTSHHHHH-TT-T-SSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCC-CCEEEEEECCT---
T ss_pred             CCCEEEEccCccCHHHHh-cc-C-CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECChHHhc-CCCcEEEECCc---
Confidence            478999999999999999 76 3 4599999999999999998865432             122 68999998631   


Q ss_pred             CCCHHHHHHHHHHcccCCcEEEEEEecc
Q 019861          244 WSSPSTGVAEISRVLRPGGVFVGTTYIV  271 (334)
Q Consensus       244 ~~d~~~~L~~i~r~LkpgG~lii~~~~~  271 (334)
                       .....++..+.++|+|||.+++.+...
T Consensus       268 -~~~~~~l~~~~~~L~~gG~l~~~~~~~  294 (336)
T 2yx1_A          268 -KFAHKFIDKALDIVEEGGVIHYYTIGK  294 (336)
T ss_dssp             -TTGGGGHHHHHHHEEEEEEEEEEEEES
T ss_pred             -HhHHHHHHHHHHHcCCCCEEEEEEeec
Confidence             112367999999999999999988764

>2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A*

Probab=98.68  E-value=1.3e-07  Score=89.42  Aligned_cols=88  Identities=22%  Similarity=0.265  Sum_probs=65.6

Q ss_pred             CCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCC-----------CCCCCCceEEEeCccccCC
Q 019861          176 VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES-----------NFPKDSIDAVHAGAAIHCW  244 (334)
Q Consensus       176 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~-----------~~~~~~fD~V~~~~vl~h~  244 (334)
                      .++.+|||+|||+|.++..+++.+.  +|+|+|+++.+++.|+++.....           .+...+||+|++.---...
T Consensus       289 ~~~~~VLDlgcG~G~~sl~la~~~~--~V~gvD~s~~ai~~A~~n~~~ngl~v~~~~~d~~~~~~~~fD~Vv~dPPr~g~  366 (425)
T 2jjq_A          289 VEGEKILDMYSGVGTFGIYLAKRGF--NVKGFDSNEFAIEMARRNVEINNVDAEFEVASDREVSVKGFDTVIVDPPRAGL  366 (425)
T ss_dssp             CCSSEEEEETCTTTHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHHTCCEEEEECCTTTCCCTTCSEEEECCCTTCS
T ss_pred             CCCCEEEEeeccchHHHHHHHHcCC--EEEEEECCHHHHHHHHHHHHHcCCcEEEEECChHHcCccCCCEEEEcCCccch
Confidence            3478999999999999999998865  99999999999999998765311           1222379999985432111


Q ss_pred             CCHHHHHHHHHHcccCCcEEEEEE
Q 019861          245 SSPSTGVAEISRVLRPGGVFVGTT  268 (334)
Q Consensus       245 ~d~~~~L~~i~r~LkpgG~lii~~  268 (334)
                        ...+++.+. .|+|||.++++.
T Consensus       367 --~~~~~~~l~-~l~p~givyvsc  387 (425)
T 2jjq_A          367 --HPRLVKRLN-REKPGVIVYVSC  387 (425)
T ss_dssp             --CHHHHHHHH-HHCCSEEEEEES
T ss_pred             --HHHHHHHHH-hcCCCcEEEEEC
Confidence              134566665 499999998864

>3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A*

Probab=98.61  E-value=7.7e-08  Score=86.45  Aligned_cols=75  Identities=11%  Similarity=0.131  Sum_probs=60.4

Q ss_pred             HHHHHHHHcccCCCCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCC------------CCCCC
Q 019861          163 EKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES------------NFPKD  230 (334)
Q Consensus       163 ~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~------------~~~~~  230 (334)
                      ....+.+.+.+...++.+|||||||+|.++..+++.+.  +|+|+|+++.+++.+++++....            ++++.
T Consensus        36 ~~i~~~Iv~~l~~~~~~~VLEIG~G~G~lT~~La~~~~--~V~aVEid~~li~~a~~~~~~~~~v~vi~gD~l~~~~~~~  113 (295)
T 3gru_A           36 KNFVNKAVESANLTKDDVVLEIGLGKGILTEELAKNAK--KVYVIEIDKSLEPYANKLKELYNNIEIIWGDALKVDLNKL  113 (295)
T ss_dssp             HHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHSS--EEEEEESCGGGHHHHHHHHHHCSSEEEEESCTTTSCGGGS
T ss_pred             HHHHHHHHHhcCCCCcCEEEEECCCchHHHHHHHhcCC--EEEEEECCHHHHHHHHHHhccCCCeEEEECchhhCCcccC
Confidence            34456677777777788999999999999999999865  99999999999999998874211            34456


Q ss_pred             CceEEEeCc
Q 019861          231 SIDAVHAGA  239 (334)
Q Consensus       231 ~fD~V~~~~  239 (334)
                      +||+|+++.
T Consensus       114 ~fD~Iv~Nl  122 (295)
T 3gru_A          114 DFNKVVANL  122 (295)
T ss_dssp             CCSEEEEEC
T ss_pred             CccEEEEeC
Confidence            799999774

>3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str}

Probab=98.59  E-value=1.9e-07  Score=87.38  Aligned_cols=110  Identities=14%  Similarity=-0.013  Sum_probs=77.6

Q ss_pred             CcHHHHHHHHcccCCCCCCcEEEECCCcCHHHHHHHHcCCC--------------------------------------C
Q 019861          161 GPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLF--------------------------------------S  202 (334)
Q Consensus       161 ~~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~--------------------------------------~  202 (334)
                      ..+.+...+.......++..|||.+||+|.++..++..+..                                      .
T Consensus       185 l~e~lAa~ll~l~~~~~~~~vlDp~CGSGt~~ieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~  264 (393)
T 3k0b_A          185 IKETMAAALVLLTSWHPDRPFYDPVCGSGTIPIEAALIGQNIAPGFNREFVSETWDWMPKQVWADARQEAEDLANYDQPL  264 (393)
T ss_dssp             CCHHHHHHHHHHSCCCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCC
T ss_pred             CcHHHHHHHHHHhCCCCCCeEEEcCCCCCHHHHHHHHHhcCcCCCccccchhhccccCCHHHHHHHHHHHHHhhcccCCc
Confidence            34556666677777777889999999999998887765332                                      4


Q ss_pred             eEEEEeCCHHHHHHHHHHHhcCC--------------CCCCCCceEEEeC--ccccCCC---CHHHHHHHHHHcccC--C
Q 019861          203 LVVALDYSENMLKQCYEFVQQES--------------NFPKDSIDAVHAG--AAIHCWS---SPSTGVAEISRVLRP--G  261 (334)
Q Consensus       203 ~v~giD~s~~~~~~a~~~~~~~~--------------~~~~~~fD~V~~~--~vl~h~~---d~~~~L~~i~r~Lkp--g  261 (334)
                      .++|+|+++.+++.|+++....+              ....++||+|+++  +... +.   +...+.+++.+.|++  |
T Consensus       265 ~V~GvDid~~al~~Ar~Na~~~gl~~~I~~~~~D~~~~~~~~~fD~Iv~NPPYg~r-l~~~~~l~~ly~~lg~~lk~~~g  343 (393)
T 3k0b_A          265 NIIGGDIDARLIEIAKQNAVEAGLGDLITFRQLQVADFQTEDEYGVVVANPPYGER-LEDEEAVRQLYREMGIVYKRMPT  343 (393)
T ss_dssp             CEEEEESCHHHHHHHHHHHHHTTCTTCSEEEECCGGGCCCCCCSCEEEECCCCCCS-HHHHHHHHHHHHHHHHHHHTCTT
T ss_pred             eEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChHhCCCCCCCCEEEECCCCccc-cCCchhHHHHHHHHHHHHhcCCC
Confidence            69999999999999999875332              0123589999998  3221 21   223455666666665  9


Q ss_pred             cEEEEEEecc
Q 019861          262 GVFVGTTYIV  271 (334)
Q Consensus       262 G~lii~~~~~  271 (334)
                      |.+++.+.+.
T Consensus       344 ~~~~iit~~~  353 (393)
T 3k0b_A          344 WSVYVLTSYE  353 (393)
T ss_dssp             CEEEEEECCT
T ss_pred             CEEEEEECCH
Confidence            9998887754

>3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile}

Probab=98.58  E-value=1.7e-07  Score=87.64  Aligned_cols=110  Identities=15%  Similarity=0.058  Sum_probs=78.4

Q ss_pred             cHHHHHHHHcccCCCCCCcEEEECCCcCHHHHHHHHcCCC--------------------------------------Ce
Q 019861          162 PEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLF--------------------------------------SL  203 (334)
Q Consensus       162 ~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~--------------------------------------~~  203 (334)
                      .+.+...+.......++.+|||++||+|.++..++..+..                                      ..
T Consensus       180 ~e~lAa~ll~~~~~~~~~~vlDp~CGSGt~lieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~  259 (385)
T 3ldu_A          180 RETLAAGLIYLTPWKAGRVLVDPMCGSGTILIEAAMIGINMAPGLNREFISEKWRTLDKKIWWDVRKDAFNKIDNESKFK  259 (385)
T ss_dssp             CHHHHHHHHHTSCCCTTSCEEETTCTTCHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHSCCSCCCC
T ss_pred             cHHHHHHHHHhhCCCCCCeEEEcCCCCCHHHHHHHHHHhhhCCCcccccchhhcccCCHHHHHHHHHHHHHHhhccCCce
Confidence            4455666777777777889999999999999888765321                                      47


Q ss_pred             EEEEeCCHHHHHHHHHHHhcCC--------------CCCCCCceEEEeCccc-cCCC---CHHHHHHHHHHcccC--CcE
Q 019861          204 VVALDYSENMLKQCYEFVQQES--------------NFPKDSIDAVHAGAAI-HCWS---SPSTGVAEISRVLRP--GGV  263 (334)
Q Consensus       204 v~giD~s~~~~~~a~~~~~~~~--------------~~~~~~fD~V~~~~vl-~h~~---d~~~~L~~i~r~Lkp--gG~  263 (334)
                      ++|+|+++.+++.|+++....+              ....++||+|+++--. +.+.   +...+.+++.+.|++  ||.
T Consensus       260 V~GvDid~~ai~~Ar~Na~~~gl~~~i~~~~~D~~~l~~~~~~D~Iv~NPPyg~rl~~~~~l~~ly~~lg~~lk~~~g~~  339 (385)
T 3ldu_A          260 IYGYDIDEESIDIARENAEIAGVDEYIEFNVGDATQFKSEDEFGFIITNPPYGERLEDKDSVKQLYKELGYAFRKLKNWS  339 (385)
T ss_dssp             EEEEESCHHHHHHHHHHHHHHTCGGGEEEEECCGGGCCCSCBSCEEEECCCCCCSHHHHHHHHHHHHHHHHHHHTSBSCE
T ss_pred             EEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhcCcCCCCcEEEECCCCcCccCCHHHHHHHHHHHHHHHhhCCCCE
Confidence            9999999999999998765321              1124589999996332 1222   234566677777776  888


Q ss_pred             EEEEEecc
Q 019861          264 FVGTTYIV  271 (334)
Q Consensus       264 lii~~~~~  271 (334)
                      +++.+.+.
T Consensus       340 ~~iit~~~  347 (385)
T 3ldu_A          340 YYLITSYE  347 (385)
T ss_dssp             EEEEESCT
T ss_pred             EEEEECCH
Confidence            88877753

>3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans}

Probab=98.56  E-value=4e-07  Score=84.93  Aligned_cols=109  Identities=13%  Similarity=0.064  Sum_probs=78.2

Q ss_pred             cHHHHHHHHcccCCCCCCcEEEECCCcCHHHHHHHHcCCC--------------------------------------Ce
Q 019861          162 PEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLF--------------------------------------SL  203 (334)
Q Consensus       162 ~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~--------------------------------------~~  203 (334)
                      .+.+...+.......++..+||.+||+|.++..++..+..                                      ..
T Consensus       179 ~e~LAaall~l~~~~~~~~llDp~CGSGt~lIEAa~~a~~iapg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~  258 (384)
T 3ldg_A          179 KENMAAAIILLSNWFPDKPFVDPTCGSGTFCIEAAMIGMNIAPGFNRDFAFEEWPWVDEALVTRVRNEADEQADYDIQLD  258 (384)
T ss_dssp             CHHHHHHHHHHTTCCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCC
T ss_pred             cHHHHHHHHHHhCCCCCCeEEEeCCcCCHHHHHHHHHhcCcCCCccccchhhhhccCCHHHHHHHHHHHHHhhhccCCce
Confidence            3455566666666667889999999999998888765332                                      36


Q ss_pred             EEEEeCCHHHHHHHHHHHhcCC-------------C-CCCCCceEEEeC--ccccCCC---CHHHHHHHHHHcccC--Cc
Q 019861          204 VVALDYSENMLKQCYEFVQQES-------------N-FPKDSIDAVHAG--AAIHCWS---SPSTGVAEISRVLRP--GG  262 (334)
Q Consensus       204 v~giD~s~~~~~~a~~~~~~~~-------------~-~~~~~fD~V~~~--~vl~h~~---d~~~~L~~i~r~Lkp--gG  262 (334)
                      ++|+|+++.+++.|+++....+             . ...++||+|+++  +... +.   +...+.+++.+.|++  ||
T Consensus       259 v~GvDid~~al~~Ar~Na~~~gl~~~I~~~~~D~~~l~~~~~fD~Iv~NPPYG~r-l~~~~~l~~ly~~lg~~lk~~~g~  337 (384)
T 3ldg_A          259 ISGFDFDGRMVEIARKNAREVGLEDVVKLKQMRLQDFKTNKINGVLISNPPYGER-LLDDKAVDILYNEMGETFAPLKTW  337 (384)
T ss_dssp             EEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCGGGCCCCCCSCEEEECCCCTTT-TSCHHHHHHHHHHHHHHHTTCTTS
T ss_pred             EEEEECCHHHHHHHHHHHHHcCCCCceEEEECChHHCCccCCcCEEEECCchhhc-cCCHHHHHHHHHHHHHHHhhCCCc
Confidence            9999999999999999875432             0 123589999997  3322 22   234566667777776  99


Q ss_pred             EEEEEEecc
Q 019861          263 VFVGTTYIV  271 (334)
Q Consensus       263 ~lii~~~~~  271 (334)
                      .+++.+++.
T Consensus       338 ~~~iit~~~  346 (384)
T 3ldg_A          338 SQFILTNDT  346 (384)
T ss_dssp             EEEEEESCT
T ss_pred             EEEEEECCH
Confidence            999888753

>2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B*

Probab=98.54  E-value=3.3e-07  Score=89.32  Aligned_cols=115  Identities=13%  Similarity=0.061  Sum_probs=85.7

Q ss_pred             cCCCCcHHHHHHHHcccCCCCCCcEEEECCCcCHHHHHHHHcCC------------------CCeEEEEeCCHHHHHHHH
Q 019861          157 GGFPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGL------------------FSLVVALDYSENMLKQCY  218 (334)
Q Consensus       157 ~~~~~~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~------------------~~~v~giD~s~~~~~~a~  218 (334)
                      +.++.|....+.+.+.+.+.++.+|||.+||+|.++..+.+...                  ...++|+|+++.+++.|+
T Consensus       149 G~fyTP~~iv~~mv~~l~p~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~~~~i~GiEid~~~~~lA~  228 (541)
T 2ar0_A          149 GQYFTPRPLIKTIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLAL  228 (541)
T ss_dssp             -CCCCCHHHHHHHHHHHCCCTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHH
T ss_pred             CeeeCCHHHHHHHHHHhccCCCCeEecCCcccchHHHHHHHHHHHhhcccccCCHHHHhhhhcceEEEEcCCHHHHHHHH
Confidence            45777888888888888887788999999999999887765410                  137999999999999999


Q ss_pred             HHHhcCC---------------C-----CCCCCceEEEeCccccCCC-------------C-HHHHHHHHHHcccCCcEE
Q 019861          219 EFVQQES---------------N-----FPKDSIDAVHAGAAIHCWS-------------S-PSTGVAEISRVLRPGGVF  264 (334)
Q Consensus       219 ~~~~~~~---------------~-----~~~~~fD~V~~~~vl~h~~-------------d-~~~~L~~i~r~LkpgG~l  264 (334)
                      .++....               .     .+.+.||+|+++=-+....             + ...++..+.+.|+|||++
T Consensus       229 ~nl~l~gi~~~~~~~~~I~~gDtL~~~~~~~~~fD~Vv~NPPf~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~gGr~  308 (541)
T 2ar0_A          229 MNCLLHDIEGNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHPGGRA  308 (541)
T ss_dssp             HHHHTTTCCCBGGGTBSEEESCTTSHHHHTSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEEEEEEE
T ss_pred             HHHHHhCCCccccccCCeEeCCCcccccccccCCeEEEECCCcccccchhhHhhcCCCCCchHHHHHHHHHHHhCCCCEE
Confidence            7643211               0     1246899999963222111             1 237899999999999999


Q ss_pred             EEEEecc
Q 019861          265 VGTTYIV  271 (334)
Q Consensus       265 ii~~~~~  271 (334)
                      .+..|+.
T Consensus       309 a~V~p~~  315 (541)
T 2ar0_A          309 AVVVPDN  315 (541)
T ss_dssp             EEEEEHH
T ss_pred             EEEecCc
Confidence            9998863

>3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli}

Probab=98.50  E-value=2.6e-07  Score=85.90  Aligned_cols=98  Identities=13%  Similarity=0.127  Sum_probs=69.4

Q ss_pred             HHHHHHHcccCCCCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCCC----------------C
Q 019861          164 KEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESN----------------F  227 (334)
Q Consensus       164 ~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~----------------~  227 (334)
                      .+.+.+.+.+... +.+|||+|||+|.++..++....  +|+|+|+++.+++.|+++......                +
T Consensus       201 ~l~~~~~~~~~~~-~~~vLDl~cG~G~~~l~la~~~~--~V~gvd~~~~ai~~a~~n~~~ng~~~v~~~~~d~~~~~~~~  277 (369)
T 3bt7_A          201 QMLEWALDVTKGS-KGDLLELYCGNGNFSLALARNFD--RVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAM  277 (369)
T ss_dssp             HHHHHHHHHTTTC-CSEEEEESCTTSHHHHHHGGGSS--EEEEECCCHHHHHHHHHHHHHTTCCSEEEECCCSHHHHHHH
T ss_pred             HHHHHHHHHhhcC-CCEEEEccCCCCHHHHHHHhcCC--EEEEEECCHHHHHHHHHHHHHcCCCceEEEECCHHHHHHHH
Confidence            3344555555443 57899999999999999988654  999999999999999988653220                1


Q ss_pred             CC--------------CCceEEEeCccccCCCCHHHHHHHHHHcccCCcEEEEEEec
Q 019861          228 PK--------------DSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYI  270 (334)
Q Consensus       228 ~~--------------~~fD~V~~~~vl~h~~d~~~~L~~i~r~LkpgG~lii~~~~  270 (334)
                      .+              .+||+|++.---      ..+..++.+.|+++|.++...-+
T Consensus       278 ~~~~~~~~l~~~~~~~~~fD~Vv~dPPr------~g~~~~~~~~l~~~g~ivyvsc~  328 (369)
T 3bt7_A          278 NGVREFNRLQGIDLKSYQCETIFVDPPR------SGLDSETEKMVQAYPRILYISCN  328 (369)
T ss_dssp             SSCCCCTTGGGSCGGGCCEEEEEECCCT------TCCCHHHHHHHTTSSEEEEEESC
T ss_pred             hhccccccccccccccCCCCEEEECcCc------cccHHHHHHHHhCCCEEEEEECC
Confidence            11              379999864210      12345677778899988876654

>3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei}

Probab=98.48  E-value=7.7e-07  Score=86.67  Aligned_cols=132  Identities=17%  Similarity=0.070  Sum_probs=93.8

Q ss_pred             CchhHHHHHHhHHHhh-----HhcCCCCcHHHHHHHHcccCCCCCCcEEEECCCcCHHHHHHHHcCC-------------
Q 019861          139 MPFMSFIYERGWRQNF-----VWGGFPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGL-------------  200 (334)
Q Consensus       139 ~~~~~~~~~~~w~~~~-----~~~~~~~~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~-------------  200 (334)
                      .+++...|+....+..     ..+.|.-|....+.+.+.+.+.++ +|||.+||+|.++..+.+...             
T Consensus       202 ~D~lG~~yE~ll~~~a~~~~k~~G~fyTP~~Vv~lmv~ll~p~~~-~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~  280 (544)
T 3khk_A          202 KDILGHVYEYFLGQFALAEGKQGGQYYTPKSIVTLIVEMLEPYKG-RVYDPAMGSGGFFVSSDKFIEKHANVKHYNASEQ  280 (544)
T ss_dssp             CCSHHHHHHHHHHHHHHTTTCCSTTTCCCHHHHHHHHHHHCCCSE-EEEESSCTTCHHHHHHHHHHHHHHHHHTSCHHHH
T ss_pred             hhHHHHHHHHHHHHHHHhhCccCCeEeCCHHHHHHHHHHHhcCCC-eEeCcccCcCcHHHHHHHHHHHhccccccchHHH
Confidence            3566666775544322     224678889999999998887655 999999999999877654210             


Q ss_pred             --CCeEEEEeCCHHHHHHHHHHHhcCC----------------CCCCCCceEEEeC--ccccC-----------------
Q 019861          201 --FSLVVALDYSENMLKQCYEFVQQES----------------NFPKDSIDAVHAG--AAIHC-----------------  243 (334)
Q Consensus       201 --~~~v~giD~s~~~~~~a~~~~~~~~----------------~~~~~~fD~V~~~--~vl~h-----------------  243 (334)
                        ...++|+|+++.+++.|+.++...+                .+++..||+|+++  +....                 
T Consensus       281 ~~~~~i~G~Eid~~~~~lA~~Nl~l~gi~~~i~i~~gDtL~~~~~~~~~fD~Iv~NPPf~~~~~~~~~~~~d~r~~~g~~  360 (544)
T 3khk_A          281 KKQISVYGQESNPTTWKLAAMNMVIRGIDFNFGKKNADSFLDDQHPDLRADFVMTNPPFNMKDWWHEKLADDPRWTINTN  360 (544)
T ss_dssp             GGGEEEEECCCCHHHHHHHHHHHHHTTCCCBCCSSSCCTTTSCSCTTCCEEEEEECCCSSCCSCCCGGGTTCGGGEECCC
T ss_pred             hhhceEEEEeCCHHHHHHHHHHHHHhCCCcccceeccchhcCcccccccccEEEECCCcCCccccchhhhhhhhhhcCcc
Confidence              2489999999999999997653211                1235689999995  22111                 


Q ss_pred             ------CC---C-HHHHHHHHHHcccCCcEEEEEEecc
Q 019861          244 ------WS---S-PSTGVAEISRVLRPGGVFVGTTYIV  271 (334)
Q Consensus       244 ------~~---d-~~~~L~~i~r~LkpgG~lii~~~~~  271 (334)
                            ++   + ...+++.+.+.|+|||++.+..|+.
T Consensus       361 ~~~~~~~~~~~~~~~~Fl~~~l~~Lk~gGr~aiVlP~g  398 (544)
T 3khk_A          361 GEKRILTPPTGNANFAWMLHMLYHLAPTGSMALLLANG  398 (544)
T ss_dssp             --CEECCCCTTCTHHHHHHHHHHTEEEEEEEEEEEETH
T ss_pred             cccccccCCCcchhHHHHHHHHHHhccCceEEEEecch
Confidence                  11   1 1268999999999999999998863

>2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38

Probab=98.46  E-value=1.3e-06  Score=79.05  Aligned_cols=101  Identities=13%  Similarity=0.082  Sum_probs=70.0

Q ss_pred             HcccCCCCCCcEEEECCCcCHHHHHHHHc-CCCCeEEEEeCCHHHHHHHHHHHhcCC------------CCC--C---CC
Q 019861          170 KGYLKPVLGGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQQES------------NFP--K---DS  231 (334)
Q Consensus       170 ~~~l~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~~v~giD~s~~~~~~a~~~~~~~~------------~~~--~---~~  231 (334)
                      ...+...++.+|||+|||+|..+..++.. +....|+++|+++.+++.+++++...+            .+.  .   ++
T Consensus        95 ~~~l~~~~g~~VLDlcaG~G~kt~~la~~~~~~g~V~a~D~~~~~l~~~~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~~  174 (309)
T 2b9e_A           95 AMLLDPPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGVSCCELAEEDFLAVSPSDPRYHE  174 (309)
T ss_dssp             HHHHCCCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGSCTTCGGGTT
T ss_pred             HHHhCCCCCCEEEEeCCChhHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCChHhcCccccccCC
Confidence            34456677899999999999999998886 334699999999999999998876432            011  1   47


Q ss_pred             ceEEEeC------ccccCCC-----------CH-------HHHHHHHHHcccCCcEEEEEEecc
Q 019861          232 IDAVHAG------AAIHCWS-----------SP-------STGVAEISRVLRPGGVFVGTTYIV  271 (334)
Q Consensus       232 fD~V~~~------~vl~h~~-----------d~-------~~~L~~i~r~LkpgG~lii~~~~~  271 (334)
                      ||.|++.      .++..-+           +.       ..+|+.+.+.|+ ||+++.++-..
T Consensus       175 fD~Vl~D~PcSg~G~~~r~pd~~~~~~~~~~~~~~l~~~Q~~iL~~a~~~l~-gG~lvYsTCs~  237 (309)
T 2b9e_A          175 VHYILLDPSCSGSGMPSRQLEEPGAGTPSPVRLHALAGFQQRALCHALTFPS-LQRLVYSTCSL  237 (309)
T ss_dssp             EEEEEECCCCCC------------------CCHHHHHHHHHHHHHHHTTCTT-CCEEEEEESCC
T ss_pred             CCEEEEcCCcCCCCCCccCCChhhhccCCHHHHHHHHHHHHHHHHHHHhccC-CCEEEEECCCC
Confidence            9999972      2332211           11       245777777786 99888776554

>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*

Probab=98.42  E-value=4.5e-07  Score=80.48  Aligned_cols=58  Identities=17%  Similarity=0.268  Sum_probs=49.6

Q ss_pred             HHHHHHHHcccCCCCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhc
Q 019861          163 EKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQ  223 (334)
Q Consensus       163 ~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~  223 (334)
                      ....+.+.+.+...++ +|||||||+|.++..+++.+.  +|+|+|+++.+++.+++++..
T Consensus        33 ~~i~~~Iv~~~~~~~~-~VLEIG~G~G~lt~~L~~~~~--~V~avEid~~~~~~l~~~~~~   90 (271)
T 3fut_A           33 EAHLRRIVEAARPFTG-PVFEVGPGLGALTRALLEAGA--EVTAIEKDLRLRPVLEETLSG   90 (271)
T ss_dssp             HHHHHHHHHHHCCCCS-CEEEECCTTSHHHHHHHHTTC--CEEEEESCGGGHHHHHHHTTT
T ss_pred             HHHHHHHHHhcCCCCC-eEEEEeCchHHHHHHHHHcCC--EEEEEECCHHHHHHHHHhcCC
Confidence            3445667777777778 999999999999999999875  999999999999999988753

>2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A*

Probab=98.41  E-value=5.4e-07  Score=83.87  Aligned_cols=88  Identities=17%  Similarity=0.107  Sum_probs=69.2

Q ss_pred             CCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcC---------------CC--C------------
Q 019861          177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQE---------------SN--F------------  227 (334)
Q Consensus       177 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~---------------~~--~------------  227 (334)
                      ++.+|||+|||+|.++..++...+..+|+++|+++.+++.+++++...               ..  .            
T Consensus        47 ~~~~VLDl~aGtG~~~l~~a~~~~~~~V~avDi~~~av~~a~~N~~~n~~~~~~~~~~~~~~~gl~~i~v~~~Da~~~~~  126 (378)
T 2dul_A           47 NPKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLMA  126 (378)
T ss_dssp             CCSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHHHH
T ss_pred             CCCEEEECCCchhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhcccccccccccccccCCCceEEEcCcHHHHHH
Confidence            467999999999999999998854568999999999999999886543               10  0            


Q ss_pred             -CCCCceEEEeCccccCCCCHHHHHHHHHHcccCCcEEEEEE
Q 019861          228 -PKDSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTT  268 (334)
Q Consensus       228 -~~~~fD~V~~~~vl~h~~d~~~~L~~i~r~LkpgG~lii~~  268 (334)
                       ..+.||+|++.-    ...+..++..+.+.|++||.++++.
T Consensus       127 ~~~~~fD~I~lDP----~~~~~~~l~~a~~~lk~gG~l~vt~  164 (378)
T 2dul_A          127 ERHRYFHFIDLDP----FGSPMEFLDTALRSAKRRGILGVTA  164 (378)
T ss_dssp             HSTTCEEEEEECC----SSCCHHHHHHHHHHEEEEEEEEEEE
T ss_pred             hccCCCCEEEeCC----CCCHHHHHHHHHHhcCCCCEEEEEe
Confidence             124799999542    1244688999999999999887765

>3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli}

Probab=98.36  E-value=5.1e-06  Score=74.12  Aligned_cols=95  Identities=15%  Similarity=0.276  Sum_probs=72.4

Q ss_pred             CCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhc-------CC-------------CCCCCCceEEE
Q 019861          177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQ-------ES-------------NFPKDSIDAVH  236 (334)
Q Consensus       177 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~-------~~-------------~~~~~~fD~V~  236 (334)
                      .+++||-||.|.|..++.+.+..+..+++.+|+++.+++.+++.+..       +.             .-..++||+|+
T Consensus        83 ~pk~VLIiGgGdG~~~revlk~~~v~~v~~VEID~~Vv~~a~~~lp~~~~~~~~dpRv~v~~~Dg~~~l~~~~~~yDvIi  162 (294)
T 3o4f_A           83 HAKHVLIIGGGDGAMLREVTRHKNVESITMVEIDAGVVSFCRQYLPNHNAGSYDDPRFKLVIDDGVNFVNQTSQTFDVII  162 (294)
T ss_dssp             CCCEEEEESCTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCTTTTTSCSSCCEEEEE
T ss_pred             CCCeEEEECCCchHHHHHHHHcCCcceEEEEcCCHHHHHHHHhcCccccccccCCCcEEEEechHHHHHhhccccCCEEE
Confidence            36799999999999999999886667999999999999999987632       11             12357899999


Q ss_pred             eCccccCCC----CHHHHHHHHHHcccCCcEEEEEEecc
Q 019861          237 AGAAIHCWS----SPSTGVAEISRVLRPGGVFVGTTYIV  271 (334)
Q Consensus       237 ~~~vl~h~~----d~~~~L~~i~r~LkpgG~lii~~~~~  271 (334)
                      ....=..-+    -...+++.+++.|+|||+++....+.
T Consensus       163 ~D~~dp~~~~~~L~t~eFy~~~~~~L~p~Gv~v~q~~sp  201 (294)
T 3o4f_A          163 SDCTDPIGPGESLFTSAFYEGCKRCLNPGGIFVAQNGVC  201 (294)
T ss_dssp             ESCCCCCCTTCCSSCCHHHHHHHHTEEEEEEEEEEEEES
T ss_pred             EeCCCcCCCchhhcCHHHHHHHHHHhCCCCEEEEecCCc
Confidence            864211100    11468999999999999999876553

>3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus}

Probab=98.35  E-value=4.7e-06  Score=80.99  Aligned_cols=132  Identities=14%  Similarity=0.010  Sum_probs=93.8

Q ss_pred             chhHHHHHHhHHHhh-----HhcCCCCcHHHHHHHHcccC----CCCCCcEEEECCCcCHHHHHHHHcC---CCCeEEEE
Q 019861          140 PFMSFIYERGWRQNF-----VWGGFPGPEKEFELMKGYLK----PVLGGNIIDASCGSGLFSRIFAKSG---LFSLVVAL  207 (334)
Q Consensus       140 ~~~~~~~~~~w~~~~-----~~~~~~~~~~~~~~l~~~l~----~~~~~~vLDiGcG~G~~~~~l~~~~---~~~~v~gi  207 (334)
                      ++++..|+...++..     ..+.|+-|....+.+.+.+.    +.++.+|||.+||+|.++..+.+..   ....++|+
T Consensus       175 D~lG~~YE~ll~~~a~~~~k~~G~fyTP~~Vv~lmv~ll~~~~~~~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~i~G~  254 (542)
T 3lkd_A          175 DMLGDAYEYLIGQFATDSGKKAGEFYTPQPVAKLMTQIAFLGREDKQGFTLYDATMGSGSLLLNAKRYSRQPQTVVYFGQ  254 (542)
T ss_dssp             THHHHHHHHHHHHHHCC---CCSSCCCCHHHHHHHHHHHHTTCTTCTTCEEEETTCTTSTTGGGHHHHCSCTTTCEEEEE
T ss_pred             hHHHHHHHHHHHHHHHHhcccCCeecccHHHHHHHHHHHhcccCCCCCCEEeecccchhHHHHHHHHHHHhccCceEEEE
Confidence            456666666544322     23567788888888888775    4567899999999999988887762   24589999


Q ss_pred             eCCHHHHHHHHHHHhcCC------------------C-CCCCCceEEEeC--ccccC-----------------CC---C
Q 019861          208 DYSENMLKQCYEFVQQES------------------N-FPKDSIDAVHAG--AAIHC-----------------WS---S  246 (334)
Q Consensus       208 D~s~~~~~~a~~~~~~~~------------------~-~~~~~fD~V~~~--~vl~h-----------------~~---d  246 (334)
                      |+++.++..|+.++.-.+                  + .....||+|+++  +....                 ++   +
T Consensus       255 Eid~~~~~lA~~Nl~l~gi~~~~~~I~~gDtL~~d~p~~~~~~fD~IvaNPPf~~~~~~~~~~~~d~rf~~~G~~~~~s~  334 (542)
T 3lkd_A          255 ELNTSTYNLARMNMILHGVPIENQFLHNADTLDEDWPTQEPTNFDGVLMNPPYSAKWSASSGFMDDPRFSPFGKLAPKSK  334 (542)
T ss_dssp             ESCHHHHHHHHHHHHHTTCCGGGEEEEESCTTTSCSCCSSCCCBSEEEECCCTTCCCCCCGGGGGSTTTGGGSSCCCTTC
T ss_pred             ECcHHHHHHHHHHHHHcCCCcCccceEecceecccccccccccccEEEecCCcCCccccchhhhhhhhhhhhhhcCCCch
Confidence            999999999987643111                  1 235689999986  11100                 11   1


Q ss_pred             -HHHHHHHHHHccc-CCcEEEEEEecc
Q 019861          247 -PSTGVAEISRVLR-PGGVFVGTTYIV  271 (334)
Q Consensus       247 -~~~~L~~i~r~Lk-pgG~lii~~~~~  271 (334)
                       ...++..+.+.|+ |||++.+..|..
T Consensus       335 ~~~~Fl~~~l~~Lk~~gGr~a~VlP~g  361 (542)
T 3lkd_A          335 ADFAFLLHGYYHLKQDNGVMAIVLPHG  361 (542)
T ss_dssp             CHHHHHHHHHHTBCTTTCEEEEEEETH
T ss_pred             hhHHHHHHHHHHhCCCceeEEEEecch
Confidence             1358999999999 999999988863

>3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0

Probab=98.30  E-value=9e-07  Score=77.88  Aligned_cols=59  Identities=7%  Similarity=0.116  Sum_probs=50.6

Q ss_pred             HHHHHHHHcccCCCCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhc
Q 019861          163 EKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQ  223 (334)
Q Consensus       163 ~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~  223 (334)
                      ....+.+.+.+...++.+|||||||+|.++..+++.+.  +|+|+|+++.+++.+++++..
T Consensus        15 ~~i~~~iv~~~~~~~~~~VLEIG~G~G~lt~~La~~~~--~V~avEid~~~~~~~~~~~~~   73 (255)
T 3tqs_A           15 SFVLQKIVSAIHPQKTDTLVEIGPGRGALTDYLLTECD--NLALVEIDRDLVAFLQKKYNQ   73 (255)
T ss_dssp             HHHHHHHHHHHCCCTTCEEEEECCTTTTTHHHHTTTSS--EEEEEECCHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHhcCCCCcCEEEEEcccccHHHHHHHHhCC--EEEEEECCHHHHHHHHHHHhh
Confidence            34455677777777788999999999999999999874  999999999999999998753

>3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A*

Probab=98.30  E-value=1.8e-06  Score=80.45  Aligned_cols=88  Identities=16%  Similarity=0.116  Sum_probs=69.2

Q ss_pred             CCCcEEEECCCcCHHHHHHHHcCCC-CeEEEEeCCHHHHHHHHHHHhcCCC------------------CCCCCceEEEe
Q 019861          177 LGGNIIDASCGSGLFSRIFAKSGLF-SLVVALDYSENMLKQCYEFVQQESN------------------FPKDSIDAVHA  237 (334)
Q Consensus       177 ~~~~vLDiGcG~G~~~~~l~~~~~~-~~v~giD~s~~~~~~a~~~~~~~~~------------------~~~~~fD~V~~  237 (334)
                      ++.+|||++||+|.++..++..... .+|+++|+++.+++.++++++...-                  ...+.||+|++
T Consensus        52 ~g~~VLDlfaGtG~~sl~aa~~~~ga~~V~avDi~~~av~~~~~N~~~Ngl~~~~v~v~~~Da~~~l~~~~~~~fD~V~l  131 (392)
T 3axs_A           52 RPVKVADPLSASGIRAIRFLLETSCVEKAYANDISSKAIEIMKENFKLNNIPEDRYEIHGMEANFFLRKEWGFGFDYVDL  131 (392)
T ss_dssp             SCEEEEESSCTTSHHHHHHHHHCSCEEEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHHHSCCSSCEEEEEE
T ss_pred             CCCEEEECCCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHhCCCCceEEEEeCCHHHHHHHhhCCCCcEEEE
Confidence            4779999999999999999886322 4899999999999999988763220                  11347999998


Q ss_pred             CccccCCCCHHHHHHHHHHcccCCcEEEEEE
Q 019861          238 GAAIHCWSSPSTGVAEISRVLRPGGVFVGTT  268 (334)
Q Consensus       238 ~~vl~h~~d~~~~L~~i~r~LkpgG~lii~~  268 (334)
                      .-    ...+..++..+.+.|++||+++++.
T Consensus       132 DP----~g~~~~~l~~a~~~Lk~gGll~~t~  158 (392)
T 3axs_A          132 DP----FGTPVPFIESVALSMKRGGILSLTA  158 (392)
T ss_dssp             CC----SSCCHHHHHHHHHHEEEEEEEEEEE
T ss_pred             CC----CcCHHHHHHHHHHHhCCCCEEEEEe
Confidence            65    2334678999999999999888766

>3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP binding, binding, capsid protein; HET: GTA SAH; 1.45A {Yellow fever virus} SCOP: c.66.1.0 PDB: 3evb_A* 3evc_A* 3evd_A* 3eve_A* 3eva_A*

Probab=98.30  E-value=8.3e-07  Score=77.84  Aligned_cols=105  Identities=16%  Similarity=0.092  Sum_probs=69.1

Q ss_pred             HHHHHHHcccCCCCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHH------H---Hh---cCCCCCCCC
Q 019861          164 KEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYE------F---VQ---QESNFPKDS  231 (334)
Q Consensus       164 ~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~------~---~~---~~~~~~~~~  231 (334)
                      ++.+...+ ....++.+|||+|||+|.|+..++...+...+.|+|+...+......      .   +.   +...++++.
T Consensus        62 KL~ei~ek-~~l~~~~~VLDLGaAPGGWSQvAa~~~~~~~v~g~dVGvDl~~~pi~~~~~g~~ii~~~~~~dv~~l~~~~  140 (277)
T 3evf_A           62 KLRWFHER-GYVKLEGRVIDLGCGRGGWCYYAAAQKEVSGVKGFTLGRDGHEKPMNVQSLGWNIITFKDKTDIHRLEPVK  140 (277)
T ss_dssp             HHHHHHHT-TSSCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTCCCCCCCCBTTGGGEEEECSCCTTTSCCCC
T ss_pred             HHHHHHHh-CCCCCCCEEEEecCCCCHHHHHHHHhcCCCcceeEEEeccCcccccccCcCCCCeEEEeccceehhcCCCC
Confidence            33444444 44456789999999999999988876433467788876332100000      0   00   112466789


Q ss_pred             ceEEEeCccccCCCCH-------HHHHHHHHHcccCC-cEEEEEEec
Q 019861          232 IDAVHAGAAIHCWSSP-------STGVAEISRVLRPG-GVFVGTTYI  270 (334)
Q Consensus       232 fD~V~~~~vl~h~~d~-------~~~L~~i~r~Lkpg-G~lii~~~~  270 (334)
                      ||+|++..+.+ ....       ..+|+.+.++|+|| |.+++..+.
T Consensus       141 ~DlVlsD~apn-sG~~~~D~~rs~~LL~~a~~~LkpG~G~FV~KVf~  186 (277)
T 3evf_A          141 CDTLLCDIGES-SSSSVTEGERTVRVLDTVEKWLACGVDNFCVKVLA  186 (277)
T ss_dssp             CSEEEECCCCC-CSCHHHHHHHHHHHHHHHHHHHTTCCSEEEEEESC
T ss_pred             ccEEEecCccC-cCchHHHHHHHHHHHHHHHHHhCCCCCeEEEEecC
Confidence            99999987655 3332       13468889999999 999997776

>2qy6_A UPF0209 protein YFCK; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Escherichia coli}

Probab=98.27  E-value=2.8e-06  Score=74.81  Aligned_cols=125  Identities=14%  Similarity=0.097  Sum_probs=81.1

Q ss_pred             CCCcEEEECCCcCHHHHHHHHc-------CCC-----CeEEEEeCCH---HHHH-----------HHHHHHhc-------
Q 019861          177 LGGNIIDASCGSGLFSRIFAKS-------GLF-----SLVVALDYSE---NMLK-----------QCYEFVQQ-------  223 (334)
Q Consensus       177 ~~~~vLDiGcG~G~~~~~l~~~-------~~~-----~~v~giD~s~---~~~~-----------~a~~~~~~-------  223 (334)
                      ++.+|||||+|+|..+..+.+.       .+.     .+++++|..+   +.+.           .+++.+..       
T Consensus        60 ~~~~ILEiGfGtG~n~l~~~~~~~~~~~~~p~~~~~~l~~isiE~~p~~~~~l~~a~~~~p~l~~~a~~l~~~w~~~~~g  139 (257)
T 2qy6_A           60 PLFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLPG  139 (257)
T ss_dssp             SEEEEEESCCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCSCSE
T ss_pred             CCCEEEEECCChHHHHHHHHHHHHhhhhhCCCCCcceeEEEEEECCcCCHHHHHHHHhcChhHHHHHHHHHHhccccccc
Confidence            4579999999999987776543       442     4899999876   4443           44444332       


Q ss_pred             ------C-C----------------CCCC---CCceEEEeCc-cccCCCC--HHHHHHHHHHcccCCcEEEEEEeccCCC
Q 019861          224 ------E-S----------------NFPK---DSIDAVHAGA-AIHCWSS--PSTGVAEISRVLRPGGVFVGTTYIVDGP  274 (334)
Q Consensus       224 ------~-~----------------~~~~---~~fD~V~~~~-vl~h~~d--~~~~L~~i~r~LkpgG~lii~~~~~~~~  274 (334)
                            . .                ..++   ..||+|+... .-..-++  -..+++.+.++|+|||+++.  ...   
T Consensus       140 ~~r~~~~~~~~~l~l~~GDa~~~l~~~~~~~~~~~D~iflD~fsp~~~p~lw~~~~l~~l~~~L~pGG~l~t--ysa---  214 (257)
T 2qy6_A          140 CHRLLLDEGRVTLDLWFGDINELISQLDDSLNQKVDAWFLDGFAPAKNPDMWTQNLFNAMARLARPGGTLAT--FTS---  214 (257)
T ss_dssp             EEEEEEC--CEEEEEEESCHHHHGGGSCGGGTTCEEEEEECSSCTTTCGGGCCHHHHHHHHHHEEEEEEEEE--SCC---
T ss_pred             hhheeccCCceEEEEEECcHHHHHhhcccccCCeEEEEEECCCCcccChhhcCHHHHHHHHHHcCCCcEEEE--EeC---
Confidence                  0 0                0112   2799999853 2221122  24789999999999999885  211   


Q ss_pred             CCchHHHHHHHHHhhhhcCccCCCCHHHHHHHHHhCCCcEEEEeec-CcEEEEEEEcC
Q 019861          275 FNLIPFSRLLRQNMMQISGSYTFLSEREIEDLCRACGLVDFKCTRN-RGFVMFTATKP  331 (334)
Q Consensus       275 ~~~~~~~~~~~~~~~~~~~~~~~~t~~~l~~ll~~~Gf~~v~~~~~-g~~~~~~a~K~  331 (334)
                                               ...+++.|.++||++.+.... +..-|+++.|.
T Consensus       215 -------------------------a~~vrr~L~~aGF~v~~~~g~~~kr~m~~a~~~  247 (257)
T 2qy6_A          215 -------------------------AGFVRRGLQEAGFTMQKRKGFGRKREMLCGVME  247 (257)
T ss_dssp             -------------------------BHHHHHHHHHHTEEEEEECCSTTCCCEEEEEEC
T ss_pred             -------------------------CHHHHHHHHHCCCEEEeCCCCCCCCceEEEEec
Confidence                                     125778899999998765433 34566666664

>2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae}

Probab=98.26  E-value=1.2e-06  Score=77.18  Aligned_cols=68  Identities=19%  Similarity=0.152  Sum_probs=50.6

Q ss_pred             CCCCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCH-------HHHHHHHHHHhc----C-C------------CCCC
Q 019861          174 KPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSE-------NMLKQCYEFVQQ----E-S------------NFPK  229 (334)
Q Consensus       174 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~-------~~~~~a~~~~~~----~-~------------~~~~  229 (334)
                      ...++.+|||+|||+|.++..++..+.  +|+|+|+++       .+++.++++...    . .            .+++
T Consensus        80 ~~~~~~~VLDlgcG~G~~a~~lA~~g~--~V~~vD~s~~~~~ll~~~l~~a~~n~~~~~~~~ri~~~~~d~~~~l~~~~~  157 (258)
T 2r6z_A           80 NHTAHPTVWDATAGLGRDSFVLASLGL--TVTAFEQHPAVACLLSDGIRRALLNPETQDTAARINLHFGNAAEQMPALVK  157 (258)
T ss_dssp             TGGGCCCEEETTCTTCHHHHHHHHTTC--CEEEEECCHHHHHHHHHHHHHHHHSHHHHHHHTTEEEEESCHHHHHHHHHH
T ss_pred             CcCCcCeEEEeeCccCHHHHHHHHhCC--EEEEEECChhhhHHHHHHHHHHHhHHHhhCCccCeEEEECCHHHHHHhhhc
Confidence            444568999999999999999999864  999999999       888888764321    1 0            1223


Q ss_pred             --CCceEEEeCccccC
Q 019861          230 --DSIDAVHAGAAIHC  243 (334)
Q Consensus       230 --~~fD~V~~~~vl~h  243 (334)
                        ++||+|++.-.+.|
T Consensus       158 ~~~~fD~V~~dP~~~~  173 (258)
T 2r6z_A          158 TQGKPDIVYLDPMYPE  173 (258)
T ss_dssp             HHCCCSEEEECCCC--
T ss_pred             cCCCccEEEECCCCCC
Confidence              68999999765554

>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*

Probab=98.25  E-value=3.3e-06  Score=84.74  Aligned_cols=110  Identities=15%  Similarity=0.013  Sum_probs=75.2

Q ss_pred             cHHHHHHHHcccCCCCCCcEEEECCCcCHHHHHHHHcC------------------------------------------
Q 019861          162 PEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSG------------------------------------------  199 (334)
Q Consensus       162 ~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~------------------------------------------  199 (334)
                      .+.+...+.......++..|||.+||+|.++..++..+                                          
T Consensus       175 ~e~LAa~ll~~~~~~~~~~llDP~CGSGt~lIeAa~~a~~~apG~~R~~f~fe~w~~~~~~~w~~~~~ea~~~~~~~~~~  254 (703)
T 3v97_A          175 KETLAAAIVMRSGWQPGTPLLDPMCGSGTLLIEAAMLATDRAPGLHRGRWGFSGWAQHDEAIWQEVKAEAQTRARKGLAE  254 (703)
T ss_dssp             CHHHHHHHHHHTTCCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCCTTTTBTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHhhCCCCCCeEEecCCCCcHHHHHHHHHHhhcCCCCCccccchhhcccCCHHHHHHHHHHHHHHhhhcccc
Confidence            34555666666666678899999999999988776542                                          


Q ss_pred             CCCeEEEEeCCHHHHHHHHHHHhcCC-----------------CCCCCCceEEEeC--ccccCCC--CHHH---HHHHHH
Q 019861          200 LFSLVVALDYSENMLKQCYEFVQQES-----------------NFPKDSIDAVHAG--AAIHCWS--SPST---GVAEIS  255 (334)
Q Consensus       200 ~~~~v~giD~s~~~~~~a~~~~~~~~-----------------~~~~~~fD~V~~~--~vl~h~~--d~~~---~L~~i~  255 (334)
                      +...++|+|+++.+++.|+.++...+                 +..+++||+|+++  +....-.  +...   .|.++.
T Consensus       255 ~~~~i~G~Did~~av~~A~~N~~~agv~~~i~~~~~D~~~~~~~~~~~~~d~Iv~NPPYG~Rlg~~~~l~~ly~~l~~~l  334 (703)
T 3v97_A          255 YSSHFYGSDSDARVIQRARTNARLAGIGELITFEVKDVAQLTNPLPKGPYGTVLSNPPYGERLDSEPALIALHSLLGRIM  334 (703)
T ss_dssp             CCCCEEEEESCHHHHHHHHHHHHHTTCGGGEEEEECCGGGCCCSCTTCCCCEEEECCCCCC---CCHHHHHHHHHHHHHH
T ss_pred             CCccEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhCccccccCCCCEEEeCCCccccccchhHHHHHHHHHHHHH
Confidence            12479999999999999999865332                 1223389999997  3322111  1223   344555


Q ss_pred             HcccCCcEEEEEEecc
Q 019861          256 RVLRPGGVFVGTTYIV  271 (334)
Q Consensus       256 r~LkpgG~lii~~~~~  271 (334)
                      +.+.|||.+++.+++.
T Consensus       335 k~~~~g~~~~ilt~~~  350 (703)
T 3v97_A          335 KNQFGGWNLSLFSASP  350 (703)
T ss_dssp             HHHCTTCEEEEEESCH
T ss_pred             HhhCCCCeEEEEeCCH
Confidence            5566899999988765

>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}

Probab=98.22  E-value=1.5e-06  Score=77.51  Aligned_cols=58  Identities=10%  Similarity=0.170  Sum_probs=47.9

Q ss_pred             HHHHHHHcccCCCCCCcEEEECCCcCHHHHHHHHcCCC--CeEEEEeCCHHHHHHHHHHH
Q 019861          164 KEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLF--SLVVALDYSENMLKQCYEFV  221 (334)
Q Consensus       164 ~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~--~~v~giD~s~~~~~~a~~~~  221 (334)
                      ...+.+.+.+...++.+|||||||+|.++..+++.+..  .+|+|+|+++.+++.++++.
T Consensus        29 ~i~~~iv~~~~~~~~~~VLEIG~G~G~lt~~La~~~~~~~~~V~avDid~~~l~~a~~~~   88 (279)
T 3uzu_A           29 GVIDAIVAAIRPERGERMVEIGPGLGALTGPVIARLATPGSPLHAVELDRDLIGRLEQRF   88 (279)
T ss_dssp             HHHHHHHHHHCCCTTCEEEEECCTTSTTHHHHHHHHCBTTBCEEEEECCHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCCCCcCEEEEEccccHHHHHHHHHhCCCcCCeEEEEECCHHHHHHHHHhc
Confidence            34456667777777889999999999999999998751  23999999999999999873

>1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A*

Probab=98.21  E-value=2.7e-06  Score=76.60  Aligned_cols=58  Identities=21%  Similarity=0.275  Sum_probs=49.1

Q ss_pred             HHHHHcccCCCCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhc
Q 019861          166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQ  223 (334)
Q Consensus       166 ~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~  223 (334)
                      .+.+.+.+...++.+|||+|||+|.++..+++..+..+|+|+|+|+.+++.|++++..
T Consensus        15 l~e~l~~L~~~~g~~vLD~g~G~G~~s~~la~~~~~~~VigvD~d~~al~~A~~~~~~   72 (301)
T 1m6y_A           15 VREVIEFLKPEDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKE   72 (301)
T ss_dssp             HHHHHHHHCCCTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGG
T ss_pred             HHHHHHhcCCCCCCEEEEEeCCcCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHh
Confidence            3445556666678899999999999999999986556999999999999999998764

>3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif, gamma-N6M-adenosine methyltrans S-adenosyl-methionine binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus}

Probab=98.18  E-value=1.2e-05  Score=80.38  Aligned_cols=115  Identities=13%  Similarity=-0.033  Sum_probs=81.1

Q ss_pred             cCCCCcHHHHHHHHcc----cCC--CCCCcEEEECCCcCHHHHHHHHcCC---CCeEEEEeCCHHHHHHH--HHHHhc--
Q 019861          157 GGFPGPEKEFELMKGY----LKP--VLGGNIIDASCGSGLFSRIFAKSGL---FSLVVALDYSENMLKQC--YEFVQQ--  223 (334)
Q Consensus       157 ~~~~~~~~~~~~l~~~----l~~--~~~~~vLDiGcG~G~~~~~l~~~~~---~~~v~giD~s~~~~~~a--~~~~~~--  223 (334)
                      +.++-|....+.+...    ++.  .++.+|||.|||+|.++..++....   ...++|+|+++.+++.|  +.++..  
T Consensus       295 GqFYTP~eLA~lMVeLA~ill~~~l~~g~rVLDPaCGSG~FLIaaA~~l~ei~~~~IyGvEIDp~Al~LAK~RlNL~lN~  374 (878)
T 3s1s_A          295 GVVPTDIELGKVLSIISQHILGRPLTEDEVISDPAAGSGNLLATVSAGFNNVMPRQIWANDIETLFLELLSIRLGLLFPQ  374 (878)
T ss_dssp             BSSSCCHHHHHHHHHHHHHHHCSCCCTTCEEEETTCTTSHHHHHHHHTSTTCCGGGEEEECSCGGGHHHHHHHHHTTSTT
T ss_pred             ceEcCCHHHHHHHHHHHhhhccccCCCCCEEEECCCCccHHHHHHHHHhcccCCCeEEEEECCHHHHHHHHHHHHHHHhh
Confidence            4566777777777665    322  3477999999999999999988653   35799999999999999  433221  


Q ss_pred             --CC---------------CCCCCCceEEEeC--ccccC-C-------------------------CC-HHHHHHHHHHc
Q 019861          224 --ES---------------NFPKDSIDAVHAG--AAIHC-W-------------------------SS-PSTGVAEISRV  257 (334)
Q Consensus       224 --~~---------------~~~~~~fD~V~~~--~vl~h-~-------------------------~d-~~~~L~~i~r~  257 (334)
                        ..               ....+.||+|+++  ++... .                         .+ ...+++.+.+.
T Consensus       375 LlhGi~~~~I~~dD~L~~~~~~~~kFDVVIgNPPYg~~~~~~~e~kd~~~r~~~g~p~~p~s~~G~~DLy~aFIe~Al~l  454 (878)
T 3s1s_A          375 LVSSNNAPTITGEDVCSLNPEDFANVSVVVMNPPYVSGVTDPAIKRKFAHKIIQLTGNRPQTLFGQIGVEALFLELVTEL  454 (878)
T ss_dssp             TCBTTBCCEEECCCGGGCCGGGGTTEEEEEECCBCCSSCCCHHHHHHHHHHHHHHHSSCCSSCSSSCCHHHHHHHHHHHH
T ss_pred             hhcCCCcceEEecchhcccccccCCCCEEEECCCccccccchhhhhhHHHHhhhhccccccccccccchHHHHHHHHHHh
Confidence              00               1124689999995  21100 0                         01 23578889999


Q ss_pred             ccCCcEEEEEEecc
Q 019861          258 LRPGGVFVGTTYIV  271 (334)
Q Consensus       258 LkpgG~lii~~~~~  271 (334)
                      |++||++.+..|..
T Consensus       455 LKpGGrLAfIlP~s  468 (878)
T 3s1s_A          455 VQDGTVISAIMPKQ  468 (878)
T ss_dssp             SCTTCEEEEEEETH
T ss_pred             cCCCcEEEEEEChH
Confidence            99999999999873

>3gcz_A Polyprotein; flavivirus, RNA capping, methyltransferase, viral enzyme STR ATP-binding, nucleotide-binding, RNA replication, structura genomics; HET: SAM; 1.70A {Yokose virus}

Probab=98.10  E-value=1.7e-06  Score=76.04  Aligned_cols=105  Identities=15%  Similarity=0.005  Sum_probs=71.5

Q ss_pred             HHHHHHHcccCCCCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHH------H---Hh---cCCCCCCCC
Q 019861          164 KEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYE------F---VQ---QESNFPKDS  231 (334)
Q Consensus       164 ~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~------~---~~---~~~~~~~~~  231 (334)
                      ++.+...++ ...++.+|||+|||+|.|+..++...+...+.|+|+...+...+..      .   +.   ....++...
T Consensus        78 KL~ei~eK~-~Lk~~~~VLDLGaAPGGWsQvAa~~~gv~sV~GvdvG~d~~~~pi~~~~~g~~ii~~~~~~dv~~l~~~~  156 (282)
T 3gcz_A           78 KLRWMEERG-YVKPTGIVVDLGCGRGGWSYYAASLKNVKKVMAFTLGVQGHEKPIMRTTLGWNLIRFKDKTDVFNMEVIP  156 (282)
T ss_dssp             HHHHHHHTT-SCCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTSCCCCCCCBTTGGGEEEECSCCGGGSCCCC
T ss_pred             HHHHHHHhc-CCCCCCEEEEeCCCCCHHHHHHHHhcCCCeeeeEEeccCccccccccccCCCceEEeeCCcchhhcCCCC
Confidence            444555554 4557789999999999999998876544578899987543211110      0   00   001345688


Q ss_pred             ceEEEeCccccCCCCH-------HHHHHHHHHcccCC--cEEEEEEec
Q 019861          232 IDAVHAGAAIHCWSSP-------STGVAEISRVLRPG--GVFVGTTYI  270 (334)
Q Consensus       232 fD~V~~~~vl~h~~d~-------~~~L~~i~r~Lkpg--G~lii~~~~  270 (334)
                      +|+|++..... ....       ..+|+-+.++|+||  |.+++-.+.
T Consensus       157 ~DvVLSDmApn-sG~~~~D~~rs~~LL~~A~~~Lk~g~~G~Fv~KvF~  203 (282)
T 3gcz_A          157 GDTLLCDIGES-SPSIAVEEQRTLRVLNCAKQWLQEGNYTEFCIKVLC  203 (282)
T ss_dssp             CSEEEECCCCC-CSCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEESC
T ss_pred             cCEEEecCccC-CCChHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEec
Confidence            99999987766 4432       13567778999999  999998876

>3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B*

Probab=98.04  E-value=3.3e-06  Score=74.01  Aligned_cols=56  Identities=9%  Similarity=0.265  Sum_probs=47.5

Q ss_pred             HHHHHHHcccCCCCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHH
Q 019861          164 KEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEF  220 (334)
Q Consensus       164 ~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~  220 (334)
                      ...+.+.+.+...++.+|||||||+|.++..+++.+ ..+++|+|+++.+++.++++
T Consensus        18 ~i~~~iv~~~~~~~~~~VLDiG~G~G~lt~~L~~~~-~~~v~avEid~~~~~~~~~~   73 (249)
T 3ftd_A           18 GVLKKIAEELNIEEGNTVVEVGGGTGNLTKVLLQHP-LKKLYVIELDREMVENLKSI   73 (249)
T ss_dssp             HHHHHHHHHTTCCTTCEEEEEESCHHHHHHHHTTSC-CSEEEEECCCHHHHHHHTTS
T ss_pred             HHHHHHHHhcCCCCcCEEEEEcCchHHHHHHHHHcC-CCeEEEEECCHHHHHHHHhc
Confidence            344566677777778899999999999999999985 35999999999999999876

>4gqb_A Protein arginine N-methyltransferase 5; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} PDB: 4g56_A*

Probab=98.03  E-value=1.5e-05  Score=78.43  Aligned_cols=85  Identities=15%  Similarity=0.077  Sum_probs=54.9

Q ss_pred             CCcEEEECCCcCHHHHHHHHc----CCCCeEEEEeCCHHHHHHHHHHHhcCC---------------CCCCCCceEEEeC
Q 019861          178 GGNIIDASCGSGLFSRIFAKS----GLFSLVVALDYSENMLKQCYEFVQQES---------------NFPKDSIDAVHAG  238 (334)
Q Consensus       178 ~~~vLDiGcG~G~~~~~l~~~----~~~~~v~giD~s~~~~~~a~~~~~~~~---------------~~~~~~fD~V~~~  238 (334)
                      ...|||||||+|-+.....++    +...+|+++|-|+. ...+++......               .. .+++|+|++-
T Consensus       358 ~~vVldVGaGrGpLv~~al~A~a~~~~~vkVyAVEknp~-A~~a~~~v~~N~~~dkVtVI~gd~eev~L-PEKVDIIVSE  435 (637)
T 4gqb_A          358 VQVLMVLGAGRGPLVNASLRAAKQADRRIKLYAVEKNPN-AVVTLENWQFEEWGSQVTVVSSDMREWVA-PEKADIIVSE  435 (637)
T ss_dssp             EEEEEEESCTTSHHHHHHHHHHHHTTCEEEEEEEESCHH-HHHHHHHHHHHTTGGGEEEEESCTTTCCC-SSCEEEEECC
T ss_pred             CcEEEEECCCCcHHHHHHHHHHHhcCCCcEEEEEECCHH-HHHHHHHHHhccCCCeEEEEeCcceeccC-CcccCEEEEE
Confidence            457999999999884444333    22237899999974 445555443221               22 3689999983


Q ss_pred             c---cccCCCCHHHHHHHHHHcccCCcEEE
Q 019861          239 A---AIHCWSSPSTGVAEISRVLRPGGVFV  265 (334)
Q Consensus       239 ~---vl~h~~d~~~~L~~i~r~LkpgG~li  265 (334)
                      .   .+-+-.-+ .+|....|.|||||.++
T Consensus       436 wMG~fLl~E~ml-evL~Ardr~LKPgGimi  464 (637)
T 4gqb_A          436 LLGSFADNELSP-ECLDGAQHFLKDDGVSI  464 (637)
T ss_dssp             CCBTTBGGGCHH-HHHHHHGGGEEEEEEEE
T ss_pred             cCcccccccCCH-HHHHHHHHhcCCCcEEc
Confidence            2   12111224 57888899999999764

>1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A

Probab=98.00  E-value=4.9e-06  Score=73.02  Aligned_cols=56  Identities=5%  Similarity=0.137  Sum_probs=43.8

Q ss_pred             HHHHHHcccCCCCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHh
Q 019861          165 EFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQ  222 (334)
Q Consensus       165 ~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~  222 (334)
                      ..+.+.+.+...++.+|||||||+|.++. +.. +...+|+|+|+++.+++.+++++.
T Consensus         9 i~~~iv~~~~~~~~~~VLEIG~G~G~lt~-l~~-~~~~~v~avEid~~~~~~a~~~~~   64 (252)
T 1qyr_A            9 VIDSIVSAINPQKGQAMVEIGPGLAALTE-PVG-ERLDQLTVIELDRDLAARLQTHPF   64 (252)
T ss_dssp             HHHHHHHHHCCCTTCCEEEECCTTTTTHH-HHH-TTCSCEEEECCCHHHHHHHHTCTT
T ss_pred             HHHHHHHhcCCCCcCEEEEECCCCcHHHH-hhh-CCCCeEEEEECCHHHHHHHHHHhc
Confidence            34455666666678899999999999999 654 442239999999999999998654

>3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3}

Probab=97.97  E-value=5.4e-05  Score=63.84  Aligned_cols=83  Identities=7%  Similarity=-0.010  Sum_probs=61.0

Q ss_pred             CCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCC------------C------------------C
Q 019861          178 GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES------------N------------------F  227 (334)
Q Consensus       178 ~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~------------~------------------~  227 (334)
                      ..+|||||||  +.+..+++.. .++++.+|.++...+.+++++...+            +                  +
T Consensus        31 a~~VLEiGtG--ySTl~lA~~~-~g~VvtvE~d~~~~~~ar~~l~~~g~~~~~~I~~~~gda~~~~~wg~p~~~~~~~~l  107 (202)
T 3cvo_A           31 AEVILEYGSG--GSTVVAAELP-GKHVTSVESDRAWARMMKAWLAANPPAEGTEVNIVWTDIGPTGDWGHPVSDAKWRSY  107 (202)
T ss_dssp             CSEEEEESCS--HHHHHHHTST-TCEEEEEESCHHHHHHHHHHHHHSCCCTTCEEEEEECCCSSBCGGGCBSSSTTGGGT
T ss_pred             CCEEEEECch--HHHHHHHHcC-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCCceEEEEeCchhhhcccccccchhhhhH
Confidence            6799999985  5666666642 4699999999999999998775421            1                  1


Q ss_pred             -----------CCCCceEEEeCccccCCCCHHHHHHHHHHcccCCcEEEEEE
Q 019861          228 -----------PKDSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTT  268 (334)
Q Consensus       228 -----------~~~~fD~V~~~~vl~h~~d~~~~L~~i~r~LkpgG~lii~~  268 (334)
                                 ..++||+|+...-     .....+..+.+.|+|||++++-.
T Consensus       108 ~~~~~~i~~~~~~~~fDlIfIDg~-----k~~~~~~~~l~~l~~GG~Iv~DN  154 (202)
T 3cvo_A          108 PDYPLAVWRTEGFRHPDVVLVDGR-----FRVGCALATAFSITRPVTLLFDD  154 (202)
T ss_dssp             THHHHGGGGCTTCCCCSEEEECSS-----SHHHHHHHHHHHCSSCEEEEETT
T ss_pred             HHHhhhhhccccCCCCCEEEEeCC-----CchhHHHHHHHhcCCCeEEEEeC
Confidence                       1267999998763     22355666779999999996643

>3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold, beta-barrel, symmetric arginine dimethylase, SAM binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB: 3ua4_A

Probab=97.89  E-value=3.4e-05  Score=76.08  Aligned_cols=88  Identities=10%  Similarity=-0.007  Sum_probs=56.3

Q ss_pred             CCcEEEECCCcCHHHHHHHH----cC---------CCCeEEEEeCCHHHHHHHHHHHhcC-C-------------CCC--
Q 019861          178 GGNIIDASCGSGLFSRIFAK----SG---------LFSLVVALDYSENMLKQCYEFVQQE-S-------------NFP--  228 (334)
Q Consensus       178 ~~~vLDiGcG~G~~~~~l~~----~~---------~~~~v~giD~s~~~~~~a~~~~~~~-~-------------~~~--  228 (334)
                      +..|||||||+|-++.....    ++         ...+|+++|.++.+....+...... .             .++  
T Consensus       410 ~~VVldVGaGtGpLs~~al~A~~~a~~~~~~~~~~~~~kVyAVEknp~A~~~l~~~~~Ng~~d~VtVI~gd~eev~lp~~  489 (745)
T 3ua3_A          410 TVVIYLLGGGRGPIGTKILKSEREYNNTFRQGQESLKVKLYIVEKNPNAIVTLKYMNVRTWKRRVTIIESDMRSLPGIAK  489 (745)
T ss_dssp             EEEEEEESCTTCHHHHHHHHHHHHHHHHHSTTSCCCEEEEEEEECCHHHHHHHHHHHHHTTTTCSEEEESCGGGHHHHHH
T ss_pred             CcEEEEECCCCCHHHHHHHHHHHHhCccccccccccccEEEEEeCChHHHHHHHHHHhcCCCCeEEEEeCchhhcccccc
Confidence            45899999999998643211    22         2348999999997665555443211 1             122  


Q ss_pred             ---CCCceEEEeCccccCCC--CHHHHHHHHHHcccCCcEEE
Q 019861          229 ---KDSIDAVHAGAAIHCWS--SPSTGVAEISRVLRPGGVFV  265 (334)
Q Consensus       229 ---~~~fD~V~~~~vl~h~~--d~~~~L~~i~r~LkpgG~li  265 (334)
                         .+++|+|++-..=....  --...|..+.+.|||||.++
T Consensus       490 ~~~~ekVDIIVSElmGsfl~nEL~pe~Ld~v~r~Lkp~Gi~i  531 (745)
T 3ua3_A          490 DRGFEQPDIIVSELLGSFGDNELSPECLDGVTGFLKPTTISI  531 (745)
T ss_dssp             HTTCCCCSEEEECCCBTTBGGGSHHHHHHTTGGGSCTTCEEE
T ss_pred             cCCCCcccEEEEeccccccchhccHHHHHHHHHhCCCCcEEE
Confidence               46899999854311111  12357888889999999755

>2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A*

Probab=97.86  E-value=2e-06  Score=97.02  Aligned_cols=137  Identities=15%  Similarity=0.145  Sum_probs=65.6

Q ss_pred             CCCcEEEECCCcCHHHHHHHHcC---C--CCeEEEEeCCHHHHHHHHHHHhcC------------CCCCCCCceEEEeCc
Q 019861          177 LGGNIIDASCGSGLFSRIFAKSG---L--FSLVVALDYSENMLKQCYEFVQQE------------SNFPKDSIDAVHAGA  239 (334)
Q Consensus       177 ~~~~vLDiGcG~G~~~~~l~~~~---~--~~~v~giD~s~~~~~~a~~~~~~~------------~~~~~~~fD~V~~~~  239 (334)
                      +..+|||||.|+|..+..+.+..   +  ..+|+..|+|+...+.+++++...            .++....||+|++..
T Consensus      1240 ~~~~ilEigagtg~~t~~il~~l~~~~~~~~~yt~td~s~~~~~~a~~~f~~~di~~~~~d~~~~~~~~~~~ydlvia~~ 1319 (2512)
T 2vz8_A         1240 PKMKVVEVLAGDGQLYSRIPALLNTQPVMDLDYTATDRNPQALEAAQAKLEQLHVTQGQWDPANPAPGSLGKADLLVCNC 1319 (2512)
T ss_dssp             SEEEEEEESCSSSCCTTTHHHHTTTSSSCEEEEEEECSSSSSTTTTTTTHHHHTEEEECCCSSCCCC-----CCEEEEEC
T ss_pred             CCceEEEECCCccHHHHHHHHhhcccCcccceEEEecCChHHHHHHHHHhhhcccccccccccccccCCCCceeEEEEcc
Confidence            46799999999997655544331   1  347999999988877777664321            123456799999999


Q ss_pred             cccCCCCHHHHHHHHHHcccCCcEEEEEEeccCCCCCchHHHHHHHHHhhhhcCccCCCCHHHHHHHHHhCCCcEEEEe
Q 019861          240 AIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLCRACGLVDFKCT  318 (334)
Q Consensus       240 vl~h~~d~~~~L~~i~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~l~~ll~~~Gf~~v~~~  318 (334)
                      +||-.++....|++++++|||||++++.+..........+   .++.  ........+.+.++|.++|+.+||..+...
T Consensus      1320 vl~~t~~~~~~l~~~~~lL~p~G~l~~~e~~~~~~~g~~~---~~~~--~~~r~~~~~~~~~~w~~~l~~~gf~~~~~~ 1393 (2512)
T 2vz8_A         1320 ALATLGDPAVAVGNMAATLKEGGFLLLHTLLAGHPLGEMV---GFLT--SPEQGGRHLLSQDQWESLFAGASLHLVALK 1393 (2512)
T ss_dssp             C--------------------CCEEEEEEC-------------------------------CTTTTSSTTTTEEEEEEE
T ss_pred             cccccccHHHHHHHHHHhcCCCcEEEEEeccccccccccc---cccc--cccccCCcccCHHHHHHHHHhCCCceeeec
Confidence            9988888999999999999999999987654321100000   0000  000012235677888999999999887653

>2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A

Probab=97.86  E-value=1.8e-05  Score=69.50  Aligned_cols=91  Identities=14%  Similarity=0.071  Sum_probs=57.7

Q ss_pred             HHHcccCCCCC--CcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHh-------------cC--------
Q 019861          168 LMKGYLKPVLG--GNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQ-------------QE--------  224 (334)
Q Consensus       168 ~l~~~l~~~~~--~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~-------------~~--------  224 (334)
                      .+.+.+...++  .+|||+|||+|..+..++..+.  +|+++|.++.+.+.+++.+.             ..        
T Consensus        77 ~l~~al~l~~g~~~~VLDl~~G~G~dal~lA~~g~--~V~~vE~~~~~~~l~~~~l~~a~~~~~~~~~l~~~i~~~~~D~  154 (258)
T 2oyr_A           77 AVAKAVGIKGDYLPDVVDATAGLGRDAFVLASVGC--RVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASS  154 (258)
T ss_dssp             HHHHHTTCBTTBCCCEEETTCTTCHHHHHHHHHTC--CEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCH
T ss_pred             HHHHHhcccCCCCCEEEEcCCcCCHHHHHHHHcCC--EEEEEECCHHHHHHHHHHHHHHHhhHhhhhhhhcCEEEEECCH
Confidence            34444544455  8999999999999999999875  89999999976554443321             00        


Q ss_pred             ----CCCCCCCceEEEeCccccCCCCHHHHHHHHHHcccCCc
Q 019861          225 ----SNFPKDSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGG  262 (334)
Q Consensus       225 ----~~~~~~~fD~V~~~~vl~h~~d~~~~L~~i~r~LkpgG  262 (334)
                          ..++ ++||+|++.-...+ .....++++..+.|++.+
T Consensus       155 ~~~L~~~~-~~fDvV~lDP~y~~-~~~saavkk~~~~lr~l~  194 (258)
T 2oyr_A          155 LTALTDIT-PRPQVVYLDPMFPH-KQKSALVKKEMRVFQSLV  194 (258)
T ss_dssp             HHHSTTCS-SCCSEEEECCCCCC-CCC-----HHHHHHHHHS
T ss_pred             HHHHHhCc-ccCCEEEEcCCCCC-cccchHHHHHHHHHHHhh
Confidence                0122 36999999766655 322345566666665543

>2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: b.171.1.1

Probab=97.82  E-value=7.2e-06  Score=55.88  Aligned_cols=44  Identities=20%  Similarity=0.193  Sum_probs=37.3

Q ss_pred             CCceeCCCCCCCccccCCCCcccccccCCcccccccccccccccCcccccccC
Q 019861           69 KNVLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSGVGTHFDMTAAS  121 (334)
Q Consensus        69 ~~~l~CPiC~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~~~~~~~~~~~~~~  121 (334)
                      ++.|+||.|+++|....         ..+.+.|+.|+..|+.++|++.++.+.
T Consensus         8 LeiL~CP~ck~~L~~~~---------~~g~LvC~~c~~~YPI~dGIPvmL~~E   51 (67)
T 2jny_A            8 LEVLACPKDKGPLRYLE---------SEQLLVNERLNLAYRIDDGIPVLLIDE   51 (67)
T ss_dssp             TCCCBCTTTCCBCEEET---------TTTEEEETTTTEEEEEETTEECCCSSC
T ss_pred             HHHhCCCCCCCcCeEeC---------CCCEEEcCCCCccccCCCCEeeeChhH
Confidence            56799999999987654         236799999999999999999998764

>2jr6_A UPF0434 protein NMA0874; solution, structural genomics, PSI, structure initiative, northeast structural genomics consort NESG; NMR {Neisseria meningitidis}

Probab=97.82  E-value=7.5e-06  Score=56.06  Aligned_cols=44  Identities=18%  Similarity=0.212  Sum_probs=37.3

Q ss_pred             CCceeCCCCCCCccccCCCCcccccccCCcccccccccccccccCcccccccC
Q 019861           69 KNVLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSGVGTHFDMTAAS  121 (334)
Q Consensus        69 ~~~l~CPiC~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~~~~~~~~~~~~~~  121 (334)
                      ++.|+||.|+++|....         ..+.+.|+.|+..|+.++|++.++.+.
T Consensus         6 L~iL~CP~ck~~L~~~~---------~~~~LiC~~cg~~YPI~dGIPvmL~~E   49 (68)
T 2jr6_A            6 LDILVCPVTKGRLEYHQ---------DKQELWSRQAKLAYPIKDGIPYMLENE   49 (68)
T ss_dssp             SCCCBCSSSCCBCEEET---------TTTEEEETTTTEEEEEETTEECCCTTT
T ss_pred             hhheECCCCCCcCeEeC---------CCCEEEcCCCCcEecCCCCeeeeChhh
Confidence            56799999999987654         236799999999999999999998763

>3eld_A Methyltransferase; flavivirus, RNA capping, guanylyltransfer viral enzyme structure; HET: SFG; 1.90A {Wesselsbron virus} PDB: 3elu_A* 3elw_A* 3ely_A* 3emb_A* 3emd_A*

Probab=97.79  E-value=3.2e-05  Score=68.35  Aligned_cols=105  Identities=16%  Similarity=0.117  Sum_probs=68.9

Q ss_pred             HHHHHHHcccCCCCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHH-------HHH--h---cCCCCCCCC
Q 019861          164 KEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCY-------EFV--Q---QESNFPKDS  231 (334)
Q Consensus       164 ~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~-------~~~--~---~~~~~~~~~  231 (334)
                      ++.+...+ --..++.+|||+||++|.|+..+.+...-..|.|+|+...+.....       ...  .   ....+..+.
T Consensus        69 KL~ei~ek-~l~~~g~~vlDLGaaPGgWsqva~~~~gv~sV~Gvdlg~~~~~~P~~~~~~~~~iv~~~~~~di~~l~~~~  147 (300)
T 3eld_A           69 KIRWLHER-GYLRITGRVLDLGCGRGGWSYYAAAQKEVMSVKGYTLGIEGHEKPIHMQTLGWNIVKFKDKSNVFTMPTEP  147 (300)
T ss_dssp             HHHHHHHH-TSCCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTSCCCCCCCBTTGGGEEEECSCCTTTSCCCC
T ss_pred             HHHHHHHh-CCCCCCCEEEEcCCCCCHHHHHHHHhcCCceeeeEEeccccccccccccccCCceEEeecCceeeecCCCC
Confidence            33444444 2234688999999999999999998644457889998653211000       000  0   011345678


Q ss_pred             ceEEEeCccccCCCCH-------HHHHHHHHHcccCC-cEEEEEEec
Q 019861          232 IDAVHAGAAIHCWSSP-------STGVAEISRVLRPG-GVFVGTTYI  270 (334)
Q Consensus       232 fD~V~~~~vl~h~~d~-------~~~L~~i~r~Lkpg-G~lii~~~~  270 (334)
                      +|+|++...-. ...+       ..+|.-+.++|+|| |.+++-.+.
T Consensus       148 ~DlVlsD~APn-sG~~~~D~~rs~~LL~~A~~~LkpG~G~FV~KvF~  193 (300)
T 3eld_A          148 SDTLLCDIGES-SSNPLVERDRTMKVLENFERWKHVNTENFCVKVLA  193 (300)
T ss_dssp             CSEEEECCCCC-CSSHHHHHHHHHHHHHHHHHHCCTTCCEEEEEESS
T ss_pred             cCEEeecCcCC-CCCHHHHHHHHHHHHHHHHHHhcCCCCcEEEEecc
Confidence            99999976655 4433       24577778999999 999998776

>2js4_A UPF0434 protein BB2007; NESG, northeast structural genomics consortium, beta, PSI-2, protein structure initiative; NMR {Bordetella bronchiseptica RB50}

Probab=97.78  E-value=7.7e-06  Score=56.35  Aligned_cols=44  Identities=25%  Similarity=0.424  Sum_probs=37.4

Q ss_pred             CCceeCCCCCCCccccCCCCcccccccCCcccccccccccccccCcccccccC
Q 019861           69 KNVLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSGVGTHFDMTAAS  121 (334)
Q Consensus        69 ~~~l~CPiC~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~~~~~~~~~~~~~~  121 (334)
                      ++.|+||.|+++|....         ..+.+.|+.|+..|+.++|++.++.+.
T Consensus         6 L~iL~CP~ck~~L~~~~---------~~~~LiC~~cg~~YPI~dGIPvmL~~E   49 (70)
T 2js4_A            6 LDILVCPVCKGRLEFQR---------AQAELVCNADRLAFPVRDGVPIMLEAE   49 (70)
T ss_dssp             CCCCBCTTTCCBEEEET---------TTTEEEETTTTEEEEEETTEECCCGGG
T ss_pred             hhheECCCCCCcCEEeC---------CCCEEEcCCCCceecCCCCeeeeChhh
Confidence            56799999999987654         236799999999999999999998763

>2pk7_A Uncharacterized protein; NESG, PLR1, putative tetraacyldisaccharide-1-P 4-kinase, Q4K structural genomics, PSI-2; 2.20A {Pseudomonas fluorescens} SCOP: b.171.1.1

Probab=97.77  E-value=8.3e-06  Score=56.00  Aligned_cols=44  Identities=25%  Similarity=0.357  Sum_probs=37.1

Q ss_pred             CCceeCCCCCCCccccCCCCcccccccCCcccccccccccccccCcccccccC
Q 019861           69 KNVLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSGVGTHFDMTAAS  121 (334)
Q Consensus        69 ~~~l~CPiC~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~~~~~~~~~~~~~~  121 (334)
                      ++.|+||.|+++|....         ..+.+.|+.|+..|+.++|++.++.+.
T Consensus         6 LeiL~CP~ck~~L~~~~---------~~~~LiC~~cg~~YPI~dGIPvmL~~e   49 (69)
T 2pk7_A            6 LDILACPICKGPLKLSA---------DKTELISKGAGLAYPIRDGIPVMLESE   49 (69)
T ss_dssp             GGTCCCTTTCCCCEECT---------TSSEEEETTTTEEEEEETTEECCCGGG
T ss_pred             HhheeCCCCCCcCeEeC---------CCCEEEcCCCCcEecCcCCeeeeChhh
Confidence            46799999999987644         236799999999999999999998763

>3ufb_A Type I restriction-modification system methyltran subunit; methyltransferase activity, transferase; 1.80A {Vibrio vulnificus}

Probab=97.77  E-value=0.00014  Score=70.49  Aligned_cols=131  Identities=19%  Similarity=0.167  Sum_probs=91.5

Q ss_pred             chhHHHHHHhHHHhh----HhcCCCCcHHHHHHHHcccCCCCCCcEEEECCCcCHHHHHHHHc----C---------CCC
Q 019861          140 PFMSFIYERGWRQNF----VWGGFPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKS----G---------LFS  202 (334)
Q Consensus       140 ~~~~~~~~~~w~~~~----~~~~~~~~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~----~---------~~~  202 (334)
                      +.++..|+...++..    ..+.|.-|....+.+.+.+.+.++.+|+|-+||+|.|+..+.+.    .         ...
T Consensus       176 d~lG~~yE~ll~~~~~~~g~~GqfyTP~~Vv~lmv~l~~p~~~~~I~DPacGsGgfL~~a~~~l~~~~~~~~~~~~~~~~  255 (530)
T 3ufb_A          176 HTLSRLYETMLREMRDAAGDSGEFYTPRPVVRFMVEVMDPQLGESVLDPACGTGGFLVEAFEHLERQCKTVEDREVLQES  255 (530)
T ss_dssp             HHHHHHHHHHHHHHTTSSSSCCCCCCCHHHHHHHHHHHCCCTTCCEEETTCTTTHHHHHHHHHHHTTCCSHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHHHHHhcCcCceECCcHHHHHHHHHhhccCCCCEEEeCCCCcchHHHHHHHHHHHhccchhHHHHHhhh
Confidence            455666666544322    12458889999999999999888899999999999998776543    1         123


Q ss_pred             eEEEEeCCHHHHHHHHHHHhcCC--------------C----CCCCCceEEEeCccc--c-------CCC------CH-H
Q 019861          203 LVVALDYSENMLKQCYEFVQQES--------------N----FPKDSIDAVHAGAAI--H-------CWS------SP-S  248 (334)
Q Consensus       203 ~v~giD~s~~~~~~a~~~~~~~~--------------~----~~~~~fD~V~~~~vl--~-------h~~------d~-~  248 (334)
                      .++|+|+++.+...|+-++.-.+              +    .+...||+|+++==+  .       .++      +. .
T Consensus       256 ~i~G~E~~~~~~~la~mNl~lhg~~~~~I~~~dtL~~~~~~~~~~~~fD~Il~NPPf~~~~~~~~~~~~~~~~~~~~~~~  335 (530)
T 3ufb_A          256 SIFGGEAKSLPYLLVQMNLLLHGLEYPRIDPENSLRFPLREMGDKDRVDVILTNPPFGGEEEKGILGNFPEDMQTAETAM  335 (530)
T ss_dssp             CEEEECCSHHHHHHHHHHHHHHTCSCCEEECSCTTCSCGGGCCGGGCBSEEEECCCSSCBCCHHHHTTSCGGGCCCBHHH
T ss_pred             hhhhhhccHHHHHHHHHHHHhcCCccccccccccccCchhhhcccccceEEEecCCCCccccccccccCchhcccchhHH
Confidence            69999999999999886532111              0    123479999986211  1       111      11 2


Q ss_pred             HHHHHHHHccc-------CCcEEEEEEec
Q 019861          249 TGVAEISRVLR-------PGGVFVGTTYI  270 (334)
Q Consensus       249 ~~L~~i~r~Lk-------pgG~lii~~~~  270 (334)
                      .++..+.+.|+       +||++.+..|.
T Consensus       336 ~Fl~~~l~~Lk~~~~~l~~gGr~avVlP~  364 (530)
T 3ufb_A          336 LFLQLIMRKLKRPGHGSDNGGRAAVVVPN  364 (530)
T ss_dssp             HHHHHHHHHBCCTTSSSSSCCEEEEEEEH
T ss_pred             HHHHHHHHHhhhhhhccCCCceEEEEecc
Confidence            56788888886       79999999986

>2hf1_A Tetraacyldisaccharide-1-P 4-kinase; LPXK, lipid A biosynthes structural genomics, PSI-2, protein structure initiative; 1.90A {Chromobacterium violaceum} SCOP: b.171.1.1

Probab=97.75  E-value=7.1e-06  Score=56.19  Aligned_cols=44  Identities=20%  Similarity=0.396  Sum_probs=37.1

Q ss_pred             CCceeCCCCCCCccccCCCCcccccccCCcccccccccccccccCcccccccC
Q 019861           69 KNVLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSGVGTHFDMTAAS  121 (334)
Q Consensus        69 ~~~l~CPiC~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~~~~~~~~~~~~~~  121 (334)
                      ++.|+||.|+++|....         ..+.+.|+.|+..|+.++|++.++.+.
T Consensus         6 L~iL~CP~ck~~L~~~~---------~~~~LiC~~cg~~YPI~dGIPvmL~~E   49 (68)
T 2hf1_A            6 LEILVCPLCKGPLVFDK---------SKDELICKGDRLAFPIKDGIPMMLESE   49 (68)
T ss_dssp             EEECBCTTTCCBCEEET---------TTTEEEETTTTEEEEEETTEECCCGGG
T ss_pred             hhheECCCCCCcCeEeC---------CCCEEEcCCCCcEecCCCCeeeeChhh
Confidence            45789999999987654         236799999999999999999998764

>3c6k_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC, phosphoprotein; HET: SPD MTA; 1.95A {Homo sapiens} PDB: 3c6m_A*

Probab=97.73  E-value=9e-05  Score=68.19  Aligned_cols=93  Identities=14%  Similarity=0.170  Sum_probs=68.7

Q ss_pred             CCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCC------C--------------------CCCC
Q 019861          177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES------N--------------------FPKD  230 (334)
Q Consensus       177 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~------~--------------------~~~~  230 (334)
                      ++++||-||.|.|..++.+.+... .+++.+|+++.+++.+++.+....      +                    -..+
T Consensus       205 ~pkrVLIIGgGdG~~~revlkh~~-~~V~~VEIDp~VVe~ar~yfp~~~~~~~d~pr~~rv~vii~Da~~fl~~~~~~~~  283 (381)
T 3c6k_A          205 TGKDVLILGGGDGGILCEIVKLKP-KMVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIEDCIPVLKRYAKEGR  283 (381)
T ss_dssp             TTCEEEEEECTTCHHHHHHHTTCC-SEEEEEESCHHHHHHHHHHCCC----CCSSSEETTEEEEESCHHHHHHHHHHHTC
T ss_pred             CCCeEEEECCCcHHHHHHHHhcCC-ceeEEEccCHHHHHHHHhhchhhhhhhhccccccceeeehHHHHHHHHhhhhccC
Confidence            467999999999999999988654 689999999999999998764210      0                    0135


Q ss_pred             CceEEEeCccccC-CCCH---------HHHHHHHHHcccCCcEEEEEEec
Q 019861          231 SIDAVHAGAAIHC-WSSP---------STGVAEISRVLRPGGVFVGTTYI  270 (334)
Q Consensus       231 ~fD~V~~~~vl~h-~~d~---------~~~L~~i~r~LkpgG~lii~~~~  270 (334)
                      +||+|+....-.. -.+|         ..+++.++++|+|||+++.....
T Consensus       284 ~yDvIIvDl~D~~~s~~p~g~a~~Lft~eFy~~~~~~L~p~GVlv~Q~~s  333 (381)
T 3c6k_A          284 EFDYVINDLTAVPISTSPEEDSTWEFLRLILDLSMKVLKQDGKYFTQGNC  333 (381)
T ss_dssp             CEEEEEEECCSSCCCCC----CHHHHHHHHHHHHHHTEEEEEEEEEEEEE
T ss_pred             ceeEEEECCCCCcccCcccCcchHHHHHHHHHHHHHhcCCCCEEEEecCC
Confidence            7999998632111 1122         36789999999999999876443

>2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A

Probab=97.71  E-value=7.5e-05  Score=67.03  Aligned_cols=60  Identities=15%  Similarity=0.147  Sum_probs=51.3

Q ss_pred             CcHHHHHHHHcccCCCCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhc
Q 019861          161 GPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQ  223 (334)
Q Consensus       161 ~~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~  223 (334)
                      .+..+.+.+..... .++..|||++||+|.++..++..+.  +++|+|+++.+++.|++++..
T Consensus       220 ~p~~l~~~~i~~~~-~~~~~vlD~f~GsGt~~~~a~~~g~--~~~g~e~~~~~~~~a~~r~~~  279 (297)
T 2zig_A          220 FPLELAERLVRMFS-FVGDVVLDPFAGTGTTLIAAARWGR--RALGVELVPRYAQLAKERFAR  279 (297)
T ss_dssp             SCHHHHHHHHHHHC-CTTCEEEETTCTTTHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHhC-CCCCEEEECCCCCCHHHHHHHHcCC--eEEEEeCCHHHHHHHHHHHHH
Confidence            45677777776665 4688999999999999999999886  999999999999999998765

>4fzv_A Putative methyltransferase NSUN4; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens} PDB: 4fp9_A*

Probab=97.62  E-value=0.00012  Score=67.35  Aligned_cols=106  Identities=16%  Similarity=0.086  Sum_probs=77.4

Q ss_pred             HHcccCCCCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCC---------------------CC
Q 019861          169 MKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES---------------------NF  227 (334)
Q Consensus       169 l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~---------------------~~  227 (334)
                      ....+.+.+|.+|||+.+|.|.=+.+++..+....++++|+++.-++..++++....                     ..
T Consensus       140 ~~~~L~~~pg~~VLD~CAaPGGKT~~la~~~~~~~l~A~D~~~~R~~~l~~~l~r~~~~~~~~~~~v~v~~~D~~~~~~~  219 (359)
T 4fzv_A          140 PVLALGLQPGDIVLDLCAAPGGKTLALLQTGCCRNLAANDLSPSRIARLQKILHSYVPEEIRDGNQVRVTSWDGRKWGEL  219 (359)
T ss_dssp             HHHHHCCCTTEEEEESSCTTCHHHHHHHHTTCEEEEEEECSCHHHHHHHHHHHHHHSCTTTTTSSSEEEECCCGGGHHHH
T ss_pred             HHHHhCCCCCCEEEEecCCccHHHHHHHHhcCCCcEEEEcCCHHHHHHHHHHHHHhhhhhhccCCceEEEeCchhhcchh
Confidence            344567788999999999999998888888766689999999998888887664211                     12


Q ss_pred             CCCCceEEEeC----c----cccCCCC------H----------HHHHHHHHHcccCCcEEEEEEeccCCC
Q 019861          228 PKDSIDAVHAG----A----AIHCWSS------P----------STGVAEISRVLRPGGVFVGTTYIVDGP  274 (334)
Q Consensus       228 ~~~~fD~V~~~----~----vl~h~~d------~----------~~~L~~i~r~LkpgG~lii~~~~~~~~  274 (334)
                      ..+.||.|++.    .    ++..-++      +          ..+|....+.|||||+|+-++=.....
T Consensus       220 ~~~~fD~VLlDaPCSg~g~g~~r~~~~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lkpGG~LVYsTCSl~~~  290 (359)
T 4fzv_A          220 EGDTYDRVLVDVPCTTDRHSLHEEENNIFKRSRKKERQILPVLQVQLLAAGLLATKPGGHVVYSTCSLSHL  290 (359)
T ss_dssp             STTCEEEEEEECCCCCHHHHTTCCTTCTTSGGGHHHHHTHHHHHHHHHHHHHHTEEEEEEEEEEESCCCTT
T ss_pred             ccccCCEEEECCccCCCCCcccccChhhhhhCCHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCchh
Confidence            34689999963    2    1211111      1          257888999999999999888766433

>4auk_A Ribosomal RNA large subunit methyltransferase M; YGDE; HET: TLA PGE; 1.90A {Escherichia coli} PDB: 4atn_A* 4b17_A*

Probab=97.59  E-value=0.00046  Score=63.28  Aligned_cols=79  Identities=14%  Similarity=0.161  Sum_probs=55.2

Q ss_pred             CCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHH-----HhcC---CCCCCCCceEEEeCccccCCCCH
Q 019861          176 VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEF-----VQQE---SNFPKDSIDAVHAGAAIHCWSSP  247 (334)
Q Consensus       176 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~-----~~~~---~~~~~~~fD~V~~~~vl~h~~d~  247 (334)
                      .+|.++||+||++|.|+..+.+.+.  .|++||+.+-.- .....     +..+   ...+.+.+|+|+|..+    .+|
T Consensus       210 ~~G~~vlDLGAaPGGWT~~l~~rg~--~V~aVD~~~l~~-~l~~~~~V~~~~~d~~~~~~~~~~~D~vvsDm~----~~p  282 (375)
T 4auk_A          210 ANGMWAVDLGACPGGWTYQLVKRNM--WVYSVDNGPMAQ-SLMDTGQVTWLREDGFKFRPTRSNISWMVCDMV----EKP  282 (375)
T ss_dssp             CTTCEEEEETCTTCHHHHHHHHTTC--EEEEECSSCCCH-HHHTTTCEEEECSCTTTCCCCSSCEEEEEECCS----SCH
T ss_pred             CCCCEEEEeCcCCCHHHHHHHHCCC--EEEEEEhhhcCh-hhccCCCeEEEeCccccccCCCCCcCEEEEcCC----CCh
Confidence            4589999999999999999999875  999999765221 11110     0011   1234568999999875    467


Q ss_pred             HHHHHHHHHcccCC
Q 019861          248 STGVAEISRVLRPG  261 (334)
Q Consensus       248 ~~~L~~i~r~Lkpg  261 (334)
                      ...+.-+.+.|..+
T Consensus       283 ~~~~~l~~~wl~~~  296 (375)
T 4auk_A          283 AKVAALMAQWLVNG  296 (375)
T ss_dssp             HHHHHHHHHHHHTT
T ss_pred             HHhHHHHHHHHhcc
Confidence            77777777777665

>2k4m_A TR8_protein, UPF0146 protein MTH_1000; alpha+beta, rossman fold, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str}

Probab=97.56  E-value=7.2e-05  Score=59.14  Aligned_cols=83  Identities=10%  Similarity=0.099  Sum_probs=55.0

Q ss_pred             CCcEEEECCCcC-HHHHHHHH-cCCCCeEEEEeCCHHHHHHHHHHHhcCCCC---CC--CCceEEEeCccccCCCCHHHH
Q 019861          178 GGNIIDASCGSG-LFSRIFAK-SGLFSLVVALDYSENMLKQCYEFVQQESNF---PK--DSIDAVHAGAAIHCWSSPSTG  250 (334)
Q Consensus       178 ~~~vLDiGcG~G-~~~~~l~~-~~~~~~v~giD~s~~~~~~a~~~~~~~~~~---~~--~~fD~V~~~~vl~h~~d~~~~  250 (334)
                      +.+|||||||.| ..+..|++ .+.  .|+++|+++..++     +..+.-|   .+  +.||+|.+..-=.   +....
T Consensus        36 ~~rVlEVG~G~g~~vA~~La~~~g~--~V~atDInp~Av~-----~v~dDiF~P~~~~Y~~~DLIYsirPP~---El~~~  105 (153)
T 2k4m_A           36 GTRVVEVGAGRFLYVSDYIRKHSKV--DLVLTDIKPSHGG-----IVRDDITSPRMEIYRGAALIYSIRPPA---EIHSS  105 (153)
T ss_dssp             SSEEEEETCTTCCHHHHHHHHHSCC--EEEEECSSCSSTT-----EECCCSSSCCHHHHTTEEEEEEESCCT---TTHHH
T ss_pred             CCcEEEEccCCChHHHHHHHHhCCC--eEEEEECCccccc-----eEEccCCCCcccccCCcCEEEEcCCCH---HHHHH
Confidence            579999999999 69999997 665  8999999998776     2222222   22  3799998765311   33344


Q ss_pred             HHHHHHcccCCcEEEEEEeccC
Q 019861          251 VAEISRVLRPGGVFVGTTYIVD  272 (334)
Q Consensus       251 L~~i~r~LkpgG~lii~~~~~~  272 (334)
                      +.++.+..  |.-++|.....+
T Consensus       106 i~~lA~~v--~adliI~pL~~E  125 (153)
T 2k4m_A          106 LMRVADAV--GARLIIKPLTGE  125 (153)
T ss_dssp             HHHHHHHH--TCEEEEECBTTB
T ss_pred             HHHHHHHc--CCCEEEEcCCCC
Confidence            55555433  456666555544

>3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis}

Probab=97.53  E-value=0.00016  Score=67.56  Aligned_cols=44  Identities=9%  Similarity=0.128  Sum_probs=40.2

Q ss_pred             CCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhc
Q 019861          178 GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQ  223 (334)
Q Consensus       178 ~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~  223 (334)
                      +.+|||+|||+|..+..++..+.  +|+|+|+|+.+++.|++++..
T Consensus        94 g~~VLDLgcG~G~~al~LA~~g~--~V~~VD~s~~~l~~Ar~N~~~  137 (410)
T 3ll7_A           94 GTKVVDLTGGLGIDFIALMSKAS--QGIYIERNDETAVAARHNIPL  137 (410)
T ss_dssp             TCEEEESSCSSSHHHHHHHTTCS--EEEEEESCHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCchHHHHHHHhcCC--EEEEEECCHHHHHHHHHhHHH
Confidence            78999999999999999998865  999999999999999988763

>2wk1_A NOVP; transferase, O-methyltransferase, novobiocin, TYLF superfamily; HET: SAH; 1.40A {Streptomyces caeruleus}

Probab=97.50  E-value=0.00021  Score=63.44  Aligned_cols=114  Identities=11%  Similarity=0.162  Sum_probs=76.8

Q ss_pred             CCCCcEEEECCCcCHHHHHHHHcC-----CCCeEEEEeCCHH--------------------------HHHHHHHHHhcC
Q 019861          176 VLGGNIIDASCGSGLFSRIFAKSG-----LFSLVVALDYSEN--------------------------MLKQCYEFVQQE  224 (334)
Q Consensus       176 ~~~~~vLDiGcG~G~~~~~l~~~~-----~~~~v~giD~s~~--------------------------~~~~a~~~~~~~  224 (334)
                      ..++.|||+|+..|..+..++...     +..+++++|..+.                          .++.+++++...
T Consensus       105 ~~pg~IlEiGv~~G~Sai~ma~~l~~~g~~~~kI~~~DtfeG~pe~~~~~~~~d~~~~~~~~~~~~~~~~~~ar~n~~~~  184 (282)
T 2wk1_A          105 NVPGDLVETGVWRGGACILMRGILRAHDVRDRTVWVADSFQGIPDVGEDGYAGDRKMALHRRNSVLAVSEEEVRRNFRNY  184 (282)
T ss_dssp             TCCCEEEEECCTTSHHHHHHHHHHHHTTCCSCCEEEEECSSCSCCCCTTSCHHHHHHCGGGGHHHHCCCHHHHHHHHHHT
T ss_pred             CCCCcEEEeecCchHHHHHHHHHhHhcCCCCCEEEEEECCCCCCcccccccccccccccccccccchhHHHHHHHHHHHc
Confidence            346799999999999887776542     3568999996421                          345566665532


Q ss_pred             C------------------CCCCCCceEEEeCccccCCCCHHHHHHHHHHcccCCcEEEEEEeccCCCCCchHHHHHHHH
Q 019861          225 S------------------NFPKDSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQ  286 (334)
Q Consensus       225 ~------------------~~~~~~fD~V~~~~vl~h~~d~~~~L~~i~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~  286 (334)
                      +                  .+++++||+|+...-.  -......|+.+...|+|||++++-+...      .+       
T Consensus       185 gl~~~~I~li~Gda~etL~~~~~~~~d~vfIDaD~--y~~~~~~Le~~~p~L~pGGiIv~DD~~~------~~-------  249 (282)
T 2wk1_A          185 DLLDEQVRFLPGWFKDTLPTAPIDTLAVLRMDGDL--YESTWDTLTNLYPKVSVGGYVIVDDYMM------CP-------  249 (282)
T ss_dssp             TCCSTTEEEEESCHHHHSTTCCCCCEEEEEECCCS--HHHHHHHHHHHGGGEEEEEEEEESSCTT------CH-------
T ss_pred             CCCcCceEEEEeCHHHHHhhCCCCCEEEEEEcCCc--cccHHHHHHHHHhhcCCCEEEEEcCCCC------CH-------
Confidence            1                  2345789999988642  1223578999999999999998855421      01       


Q ss_pred             HhhhhcCccCCCCHHHHHHHHHhCCCcEE
Q 019861          287 NMMQISGSYTFLSEREIEDLCRACGLVDF  315 (334)
Q Consensus       287 ~~~~~~~~~~~~t~~~l~~ll~~~Gf~~v  315 (334)
                         .        ..+.+.+++++.|++..
T Consensus       250 ---G--------~~~Av~Ef~~~~~i~~~  267 (282)
T 2wk1_A          250 ---P--------CKDAVDEYRAKFDIADE  267 (282)
T ss_dssp             ---H--------HHHHHHHHHHHTTCCSC
T ss_pred             ---H--------HHHHHHHHHHhcCCceE
Confidence               0        14577788888887643

>2kpi_A Uncharacterized protein SCO3027; zinc finger, PSI-2, NESG, all beta, structural genomics, protein structure initiative; NMR {Streptomyces coelicolor}

Probab=97.48  E-value=4.4e-05  Score=50.16  Aligned_cols=43  Identities=26%  Similarity=0.444  Sum_probs=36.6

Q ss_pred             CCCceeCCCCCCCccccCCCCcccccccCCccccc--ccccccccccCcccccccC
Q 019861           68 SKNVLACPICYKPLTWIGDSSLSIESAAGSSLQCN--TCKKTYSGVGTHFDMTAAS  121 (334)
Q Consensus        68 ~~~~l~CPiC~~~l~~~~~~~~~~~~~~~~~~~C~--~C~~~~~~~~~~~~~~~~~  121 (334)
                      -++.|.||.|+++|....           +.+.|+  .|+..|+.++|++.++.+.
T Consensus         7 lL~iL~CP~c~~~L~~~~-----------~~L~C~~~~c~~~YPI~dGIPvlL~~e   51 (56)
T 2kpi_A            7 LLEILACPACHAPLEERD-----------AELICTGQDCGLAYPVRDGIPVLLVDE   51 (56)
T ss_dssp             CTTSCCCSSSCSCEEEET-----------TEEEECSSSCCCEEEEETTEECCCTTT
T ss_pred             HHhheeCCCCCCcceecC-----------CEEEcCCcCCCcEEeeECCEeeeCHHH
Confidence            356799999999987643           679999  9999999999999988754

>2px2_A Genome polyprotein [contains: capsid protein C (core protein); envelope protein M...; methyltransferase, SAH; HET: SAH; 2.00A {Murray valley encephalitis virus} PDB: 2px4_A* 2px5_A* 2pxa_A* 2pxc_A* 2px8_A* 2oy0_A*

Probab=97.44  E-value=0.00018  Score=62.29  Aligned_cols=103  Identities=16%  Similarity=0.085  Sum_probs=61.4

Q ss_pred             HHHHHcccCCCCCCcEEEECCCcCHHHHHHHHcCCC----CeEEEEe--CCHHHHH-HHHHHHh-----cCCCCCCCCce
Q 019861          166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLF----SLVVALD--YSENMLK-QCYEFVQ-----QESNFPKDSID  233 (334)
Q Consensus       166 ~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~----~~v~giD--~s~~~~~-~a~~~~~-----~~~~~~~~~fD  233 (334)
                      .++..+. -..++.+|||+||+.|.|+..+++.-.-    +.++|+|  +.+.... ..-..+.     +....+...+|
T Consensus        63 ~EIdeK~-likpg~~VVDLGaAPGGWSQvAa~~~~vg~V~G~vig~D~~~~P~~~~~~Gv~~i~~~~G~Df~~~~~~~~D  141 (269)
T 2px2_A           63 RWLVERR-FVQPIGKVVDLGCGRGGWSYYAATMKNVQEVRGYTKGGPGHEEPMLMQSYGWNIVTMKSGVDVFYKPSEISD  141 (269)
T ss_dssp             HHHHHTT-SCCCCEEEEEETCTTSHHHHHHTTSTTEEEEEEECCCSTTSCCCCCCCSTTGGGEEEECSCCGGGSCCCCCS
T ss_pred             HHHHHcC-CCCCCCEEEEcCCCCCHHHHHHhhhcCCCCceeEEEccccccCCCcccCCCceEEEeeccCCccCCCCCCCC
Confidence            3344443 4456899999999999999999886211    2344445  2111000 0000000     00123345799


Q ss_pred             EEEeCccccCCCCHH-------HHHHHHHHcccCCc-EEEEEEec
Q 019861          234 AVHAGAAIHCWSSPS-------TGVAEISRVLRPGG-VFVGTTYI  270 (334)
Q Consensus       234 ~V~~~~vl~h~~d~~-------~~L~~i~r~LkpgG-~lii~~~~  270 (334)
                      +|+|...-. ..++.       .+|.-+.++|+||| .+++-.+.
T Consensus       142 vVLSDMAPn-SG~~~vD~~Rs~~aL~~A~~~Lk~gG~~FvvKVFq  185 (269)
T 2px2_A          142 TLLCDIGES-SPSAEIEEQRTLRILEMVSDWLSRGPKEFCIKILC  185 (269)
T ss_dssp             EEEECCCCC-CSCHHHHHHHHHHHHHHHHHHHTTCCSEEEEEESC
T ss_pred             EEEeCCCCC-CCccHHHHHHHHHHHHHHHHHhhcCCcEEEEEECC
Confidence            999987643 33331       25666778999999 99998887

>1wg8_A Predicted S-adenosylmethionine-dependent methyltransferase; S-adenosyl-methyltransferase, MRAW; HET: SAM; 2.00A {Thermus thermophilus} SCOP: a.60.13.1 c.66.1.23

Probab=97.44  E-value=0.00028  Score=62.24  Aligned_cols=64  Identities=17%  Similarity=0.180  Sum_probs=50.4

Q ss_pred             HHHHcccCCCCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCCCCCCCCceEEEeCc
Q 019861          167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKDSIDAVHAGA  239 (334)
Q Consensus       167 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~~~fD~V~~~~  239 (334)
                      +.+.+.+...+++.+||.+||.|..+..+++.  ..+|+|+|.++.+++.+++ +..      +.+.+|..++
T Consensus        12 ~e~le~L~~~~gg~~VD~T~G~GGHS~~il~~--~g~VigiD~Dp~Ai~~A~~-L~~------~rv~lv~~~f   75 (285)
T 1wg8_A           12 QEALDLLAVRPGGVYVDATLGGAGHARGILER--GGRVIGLDQDPEAVARAKG-LHL------PGLTVVQGNF   75 (285)
T ss_dssp             HHHHHHHTCCTTCEEEETTCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHH-TCC------TTEEEEESCG
T ss_pred             HHHHHhhCCCCCCEEEEeCCCCcHHHHHHHHC--CCEEEEEeCCHHHHHHHHh-hcc------CCEEEEECCc
Confidence            45555666677899999999999999999998  3599999999999999998 643      3455555443

>3lkz_A Non-structural protein 5; flavivirus, methyltransferase, inhibitor, P nucleotide-binding, RNA replication, viral protein; HET: SFG; 2.00A {West nile virus}

Probab=97.38  E-value=0.00027  Score=62.27  Aligned_cols=106  Identities=16%  Similarity=0.077  Sum_probs=70.3

Q ss_pred             HHHHHHHcccCCCCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHH---------HHHHHHhcC---CCCCCCC
Q 019861          164 KEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLK---------QCYEFVQQE---SNFPKDS  231 (334)
Q Consensus       164 ~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~---------~a~~~~~~~---~~~~~~~  231 (334)
                      ++.+...+ ....++.+|||+||++|.|+..++.......|+|+|+-..-.+         ..--.+...   ..++...
T Consensus        82 KL~ei~~~-~~l~~~~~VlDLGaapGGwsq~~~~~~gv~~V~avdvG~~~he~P~~~~ql~w~lV~~~~~~Dv~~l~~~~  160 (321)
T 3lkz_A           82 KLRWLVER-RFLEPVGKVIDLGCGRGGWCYYMATQKRVQEVRGYTKGGPGHEEPQLVQSYGWNIVTMKSGVDVFYRPSEC  160 (321)
T ss_dssp             HHHHHHHT-TSCCCCEEEEEETCTTCHHHHHHTTCTTEEEEEEECCCSTTSCCCCCCCBTTGGGEEEECSCCTTSSCCCC
T ss_pred             HHHHHHHh-cCCCCCCEEEEeCCCCCcHHHHHHhhcCCCEEEEEEcCCCCccCcchhhhcCCcceEEEeccCHhhCCCCC
Confidence            33444444 4445678999999999999997777643457999998765111         000000011   1234477


Q ss_pred             ceEEEeCccccCCCCHH-------HHHHHHHHcccCC-cEEEEEEecc
Q 019861          232 IDAVHAGAAIHCWSSPS-------TGVAEISRVLRPG-GVFVGTTYIV  271 (334)
Q Consensus       232 fD~V~~~~vl~h~~d~~-------~~L~~i~r~Lkpg-G~lii~~~~~  271 (334)
                      +|+|+|.-. +--++|.       .+|+-+.+.|++| |.+++-....
T Consensus       161 ~D~ivcDig-eSs~~~~ve~~Rtl~vLel~~~wL~~~~~~f~~KVl~p  207 (321)
T 3lkz_A          161 CDTLLCDIG-ESSSSAEVEEHRTIRVLEMVEDWLHRGPREFCVKVLCP  207 (321)
T ss_dssp             CSEEEECCC-CCCSCHHHHHHHHHHHHHHHHHHHTTCCCEEEEEESCT
T ss_pred             CCEEEEECc-cCCCChhhhhhHHHHHHHHHHHHhccCCCcEEEEEcCC
Confidence            999999877 7777763       3566667889988 8888877664

>1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11

Probab=97.13  E-value=0.0012  Score=57.84  Aligned_cols=62  Identities=19%  Similarity=0.193  Sum_probs=51.9

Q ss_pred             CCCcHHHHHHHHcccCCCCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhc
Q 019861          159 FPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQ  223 (334)
Q Consensus       159 ~~~~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~  223 (334)
                      ...|..+.+.+.+... .++..|||..||+|..+..+...+.  +++|+|+++..++.+++++..
T Consensus       195 ~~~p~~l~~~~i~~~~-~~~~~vlD~f~GsGtt~~~a~~~gr--~~ig~e~~~~~~~~~~~r~~~  256 (260)
T 1g60_A          195 TPKPRDLIERIIRASS-NPNDLVLDCFMGSGTTAIVAKKLGR--NFIGCDMNAEYVNQANFVLNQ  256 (260)
T ss_dssp             CCCCHHHHHHHHHHHC-CTTCEEEESSCTTCHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHC
T ss_pred             CCCCHHHHHHHHHHhC-CCCCEEEECCCCCCHHHHHHHHcCC--eEEEEeCCHHHHHHHHHHHHh
Confidence            3446677777766654 4578999999999999999999886  999999999999999998764

>2k5r_A Uncharacterized protein XF2673; solution structure, structural genomics, PSI-2, protein structure initiative; NMR {Xylella fastidiosa TEMECULA1}

Probab=97.06  E-value=0.00021  Score=52.21  Aligned_cols=52  Identities=12%  Similarity=0.110  Sum_probs=38.3

Q ss_pred             CCceeCCCCCCCccccCC------------------CCcccccccCCcccccccccccccccCccccccc
Q 019861           69 KNVLACPICYKPLTWIGD------------------SSLSIESAAGSSLQCNTCKKTYSGVGTHFDMTAA  120 (334)
Q Consensus        69 ~~~l~CPiC~~~l~~~~~------------------~~~~~~~~~~~~~~C~~C~~~~~~~~~~~~~~~~  120 (334)
                      ++.|+||.|+++|.....                  .+........+.+.|+.|+..|+.++|++.++.+
T Consensus         6 LdILaCP~cK~pL~l~~~~~~~~~~ca~~~~~~~~~~~~~~~e~~~~~LvC~~c~~~YPI~dGIPvmL~~   75 (97)
T 2k5r_A            6 LHLLCSPDTRQPLSLLESKGLEALNKAIVSGTVQRADGSIQNQSLHEALITRDRKQVFRIEDSIPVLLPE   75 (97)
T ss_dssp             CSSCCCCTTSSCCEECCHHHHHHHHHHHHHTCCBCTTSCBCCCCCSEEEECTTSCEEEEEETTEEECCGG
T ss_pred             hhheECCCCCCcccccccchhhhhhhhhhccccccccccccccccCCeEEcCCCCCCccccCCCcccChH
Confidence            568999999998865331                  0111122235689999999999999999999876

>1rjd_A PPM1P, carboxy methyl transferase for protein phosphatase 2A catalytic subunit; SAM dependent methyltransferase; HET: SAM; 1.80A {Saccharomyces cerevisiae} SCOP: c.66.1.37 PDB: 1rje_A* 1rjf_A 1rjg_A* 2ob2_A* 2ob1_A

Probab=97.06  E-value=0.0048  Score=56.13  Aligned_cols=134  Identities=13%  Similarity=0.144  Sum_probs=87.0

Q ss_pred             CCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcC-----------------------C-------C
Q 019861          177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQE-----------------------S-------N  226 (334)
Q Consensus       177 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~-----------------------~-------~  226 (334)
                      +...|+.+|||.......+...++...++-+|. +..++.-++.+...                       .       .
T Consensus        97 ~~~qVV~LGaGlDTr~~RL~~~~~~~~~~EvD~-P~vi~~K~~~l~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~v~~D  175 (334)
T 1rjd_A           97 EKVQVVNLGCGSDLRMLPLLQMFPHLAYVDIDY-NESVELKNSILRESEILRISLGLSKEDTAKSPFLIDQGRYKLAACD  175 (334)
T ss_dssp             SSEEEEEETCTTCCTHHHHHHHCTTEEEEEEEC-HHHHHHHHHHHHHSHHHHHHHTCCSSCCCCTTEEEECSSEEEEECC
T ss_pred             CCcEEEEeCCCCccHHHHhcCcCCCCEEEECCC-HHHHHHHHHHhhhccchhhhcccccccccccccccCCCceEEEecC
Confidence            457899999999998888887655567778887 77666655543321                       0       0


Q ss_pred             -------------C-CCCCceEEEeCccccCCCCH--HHHHHHHHHcccCCcEEEEEEeccCCCCCchHHHHHHHHHhhh
Q 019861          227 -------------F-PKDSIDAVHAGAAIHCWSSP--STGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQ  290 (334)
Q Consensus       227 -------------~-~~~~fD~V~~~~vl~h~~d~--~~~L~~i~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~  290 (334)
                                   . ..+...++++-.+|.+++..  ..+|+.+.+.+ |+|.+++.++.... ....++...+...+..
T Consensus       176 L~d~~w~~~ll~~~~d~~~Ptl~iaEgvL~YL~~~~~~~ll~~ia~~~-~~~~~v~~e~i~~~-~~~~~fg~~m~~~l~~  253 (334)
T 1rjd_A          176 LNDITETTRLLDVCTKREIPTIVISECLLCYMHNNESQLLINTIMSKF-SHGLWISYDPIGGS-QPNDRFGAIMQSNLKE  253 (334)
T ss_dssp             TTCHHHHHHHHHTTCCTTSCEEEEEESCGGGSCHHHHHHHHHHHHHHC-SSEEEEEEEECCCC-STTCCHHHHHHHHHHH
T ss_pred             CCCcHHHHHHHHhcCCCCCCEEEEEcchhhCCCHHHHHHHHHHHHhhC-CCcEEEEEeccCCC-CCcchHHHHHHHHhhc
Confidence                         1 22456788888899988743  46788888877 77877766655431 1112232223222221


Q ss_pred             -----hcCccCCCCHHHHHHHHHhCCCc
Q 019861          291 -----ISGSYTFLSEREIEDLCRACGLV  313 (334)
Q Consensus       291 -----~~~~~~~~t~~~l~~ll~~~Gf~  313 (334)
                           ..+...+.+.++..+.|.++||+
T Consensus       254 ~rg~~l~~~~~y~s~~~~~~rl~~~Gf~  281 (334)
T 1rjd_A          254 SRNLEMPTLMTYNSKEKYASRWSAAPNV  281 (334)
T ss_dssp             HHCCCCTTTTTTCSHHHHHGGGTTSSEE
T ss_pred             ccCCcccccccCCCHHHHHHHHHHCCCC
Confidence                 12233567999999999999997

>3p8z_A Mtase, non-structural protein 5; methyltransferase, RNA, ER, transferase-transferase inhibito; HET: 36A SAH; 1.70A {Dengue virus 3} SCOP: c.66.1.25 PDB: 3p97_A* 2xbm_A* 3evg_A*

Probab=97.05  E-value=0.00092  Score=57.00  Aligned_cols=105  Identities=14%  Similarity=0.088  Sum_probs=67.4

Q ss_pred             HHHHHHcccCCCCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHH--H-------HHhcC---CCCCCCCc
Q 019861          165 EFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCY--E-------FVQQE---SNFPKDSI  232 (334)
Q Consensus       165 ~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~--~-------~~~~~---~~~~~~~f  232 (334)
                      +.+...++ ...++.+|||+||++|.|+..++.......|+|+|+-..-.+.-+  +       .+...   ...+..++
T Consensus        67 L~ei~ek~-~l~~g~~VvDLGaapGGWSq~~a~~~g~~~V~avdvG~~ghe~P~~~~s~gwn~v~fk~gvDv~~~~~~~~  145 (267)
T 3p8z_A           67 LQWFVERN-MVIPEGRVIDLGCGRGGWSYYCAGLKKVTEVRGYTKGGPGHEEPVPMSTYGWNIVKLMSGKDVFYLPPEKC  145 (267)
T ss_dssp             HHHHHHTT-SSCCCEEEEEESCTTSHHHHHHHTSTTEEEEEEECCCSTTSCCCCCCCCTTTTSEEEECSCCGGGCCCCCC
T ss_pred             HHHHHHhc-CCCCCCEEEEcCCCCCcHHHHHHHhcCCCEEEEEecCCCCccCcchhhhcCcCceEEEeccceeecCCccc
Confidence            34444444 556788999999999999998877644458999998654321000  0       00000   01344679


Q ss_pred             eEEEeCccccCCCCHH-------HHHHHHHHcccCCcEEEEEEeccC
Q 019861          233 DAVHAGAAIHCWSSPS-------TGVAEISRVLRPGGVFVGTTYIVD  272 (334)
Q Consensus       233 D~V~~~~vl~h~~d~~-------~~L~~i~r~LkpgG~lii~~~~~~  272 (334)
                      |.|+|.-.= --++|.       .+|+-+.+.|++ |.+++-.....
T Consensus       146 DtllcDIge-Ss~~~~vE~~RtlrvLela~~wL~~-~~fc~KVl~py  190 (267)
T 3p8z_A          146 DTLLCDIGE-SSPSPTVEESRTIRVLKMVEPWLKN-NQFCIKVLNPY  190 (267)
T ss_dssp             SEEEECCCC-CCSCHHHHHHHHHHHHHHHGGGCSS-CEEEEEESCCC
T ss_pred             cEEEEecCC-CCCChhhhhhHHHHHHHHHHHhccc-CCEEEEEccCC
Confidence            999997664 444542       356666788998 78888776653

>3vyw_A MNMC2; tRNA wobble uridine, modification enzyme, genetic CODE, 5- methylaminomethyl-2-thiouridine, methyltransferase; HET: SAM; 2.49A {Aquifex aeolicus} PDB: 2e58_A*

Probab=96.93  E-value=0.011  Score=52.68  Aligned_cols=74  Identities=18%  Similarity=0.112  Sum_probs=52.4

Q ss_pred             CCCCCceEEEeCccccCCCCH----HHHHHHHHHcccCCcEEEEEEeccCCCCCchHHHHHHHHHhhhhcCccCCCCHHH
Q 019861          227 FPKDSIDAVHAGAAIHCWSSP----STGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSERE  302 (334)
Q Consensus       227 ~~~~~fD~V~~~~vl~h~~d~----~~~L~~i~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~  302 (334)
                      +++..+|+|+... +---.+|    ..+++.++++++|||++.-  ..                            ....
T Consensus       182 l~~~~~Da~flDg-FsP~kNPeLWs~e~f~~l~~~~~pgg~laT--Yt----------------------------aag~  230 (308)
T 3vyw_A          182 VENFKADAVFHDA-FSPYKNPELWTLDFLSLIKERIDEKGYWVS--YS----------------------------SSLS  230 (308)
T ss_dssp             CCSCCEEEEEECC-SCTTTSGGGGSHHHHHHHHTTEEEEEEEEE--SC----------------------------CCHH
T ss_pred             hcccceeEEEeCC-CCcccCcccCCHHHHHHHHHHhCCCcEEEE--Ee----------------------------CcHH
Confidence            3455799999864 2222355    4899999999999998764  22                            2347


Q ss_pred             HHHHHHhCCCcEEEEee-cCcEEEEEEEcC
Q 019861          303 IEDLCRACGLVDFKCTR-NRGFVMFTATKP  331 (334)
Q Consensus       303 l~~ll~~~Gf~~v~~~~-~g~~~~~~a~K~  331 (334)
                      +++.|+++||+|.+..- ++..-|.+|.++
T Consensus       231 VRR~L~~aGF~V~k~~G~g~KReml~A~~~  260 (308)
T 3vyw_A          231 VRKSLLTLGFKVGSSREIGRKRKGTVASLK  260 (308)
T ss_dssp             HHHHHHHTTCEEEEEECC---CEEEEEESS
T ss_pred             HHHHHHHCCCEEEecCCCCCCCceeEEecC
Confidence            88999999999887654 455678888775

>2uyo_A Hypothetical protein ML2640; putative methyltransferase, transferas; 1.7A {Mycobacterium leprae} SCOP: c.66.1.57 PDB: 2ckd_A 2uyq_A*

Probab=96.32  E-value=0.031  Score=50.16  Aligned_cols=134  Identities=11%  Similarity=0.013  Sum_probs=85.0

Q ss_pred             CcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCC------------C-------------CCCCCce
Q 019861          179 GNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES------------N-------------FPKDSID  233 (334)
Q Consensus       179 ~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~------------~-------------~~~~~fD  233 (334)
                      ..||++|||-=.....+.. .....++-+| .+..++..++.+....            .             +....-=
T Consensus       104 ~QvV~LGaGlDTra~Rl~~-~~~~~v~evD-~P~vi~~k~~lL~~~~~~~~~~~~~v~~Dl~d~~~~~l~~~g~d~~~Pt  181 (310)
T 2uyo_A          104 RQFVILASGLDSRAYRLDW-PTGTTVYEID-QPKVLAYKSTTLAEHGVTPTADRREVPIDLRQDWPPALRSAGFDPSART  181 (310)
T ss_dssp             CEEEEETCTTCCHHHHSCC-CTTCEEEEEE-CHHHHHHHHHHHHHTTCCCSSEEEEEECCTTSCHHHHHHHTTCCTTSCE
T ss_pred             CeEEEeCCCCCchhhhccC-CCCcEEEEcC-CHHHHHHHHHHHHhcCCCCCCCeEEEecchHhhHHHHHHhccCCCCCCE
Confidence            4799999998766555442 2235899999 5888888888775311            1             2223445


Q ss_pred             EEEeCccccCCCC--HHHHHHHHHHcccCCcEEEEEEeccCCCCCchHHHHHHH-HHhhhhc-------CccCC-CC-HH
Q 019861          234 AVHAGAAIHCWSS--PSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLR-QNMMQIS-------GSYTF-LS-ER  301 (334)
Q Consensus       234 ~V~~~~vl~h~~d--~~~~L~~i~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~-~~~~~~~-------~~~~~-~t-~~  301 (334)
                      ++++-.+|+++++  ...+|+.+.+.+.||+.+++.....+. .........+. ..+....       ....+ .+ .+
T Consensus       182 ~~i~Egvl~Yl~~~~~~~ll~~l~~~~~~gs~l~~d~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~  260 (310)
T 2uyo_A          182 AWLAEGLLMYLPATAQDGLFTEIGGLSAVGSRIAVETSPLHG-DEWREQMQLRFRRVSDALGFEQAVDVQELIYHDENRA  260 (310)
T ss_dssp             EEEECSCGGGSCHHHHHHHHHHHHHTCCTTCEEEEECCCTTC-SHHHHHHHHHHHHHHC-----------CCTTCCTTCC
T ss_pred             EEEEechHhhCCHHHHHHHHHHHHHhCCCCeEEEEEecCCCC-cchhHHHHHHHHHHHHHcCCcCCCCccccccCCCChH
Confidence            7778889999984  357899999988999998887765432 10111112122 2221111       12233 36 78


Q ss_pred             HHHHHHHhCCCcEE
Q 019861          302 EIEDLCRACGLVDF  315 (334)
Q Consensus       302 ~l~~ll~~~Gf~~v  315 (334)
                      ++.+.|.+.||+.+
T Consensus       261 ~~~~~f~~~G~~~~  274 (310)
T 2uyo_A          261 VVADWLNRHGWRAT  274 (310)
T ss_dssp             CHHHHHTTTTEEEE
T ss_pred             HHHHHHHHCcCccc
Confidence            99999999999887

>3tka_A Ribosomal RNA small subunit methyltransferase H; HET: SAM CTN PG4; 2.25A {Escherichia coli}

Probab=96.14  E-value=0.0073  Score=54.51  Aligned_cols=53  Identities=21%  Similarity=0.218  Sum_probs=45.3

Q ss_pred             HHHHHcccCCCCCCcEEEECCCcCHHHHHHHHc-CCCCeEEEEeCCHHHHHHHH
Q 019861          166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQCY  218 (334)
Q Consensus       166 ~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~~v~giD~s~~~~~~a~  218 (334)
                      .+.+.+.+...+++.+||..+|.|..+..+++. ++.++|+|+|.++.+++.++
T Consensus        46 l~Evl~~L~i~pggiyVD~TlG~GGHS~~iL~~lg~~GrVig~D~Dp~Al~~A~   99 (347)
T 3tka_A           46 LDEAVNGLNIRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAK   99 (347)
T ss_dssp             THHHHHHTCCCTTCEEEESCCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHT
T ss_pred             HHHHHHhhCCCCCCEEEEeCcCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHH
Confidence            345566677778999999999999999999887 56789999999999999884

>1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24

Probab=96.03  E-value=0.011  Score=54.06  Aligned_cols=58  Identities=16%  Similarity=0.064  Sum_probs=44.5

Q ss_pred             HHHHHHHcccCCC------CCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHH
Q 019861          164 KEFELMKGYLKPV------LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFV  221 (334)
Q Consensus       164 ~~~~~l~~~l~~~------~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~  221 (334)
                      ...+.|.+.+...      ++..|||||.|.|.++..|.+.....+++++|+++..+...++.+
T Consensus        39 ~i~~~Iv~~~~l~~~~~~~~~~~VlEIGPG~G~LT~~Ll~~~~~~~vvavE~D~~l~~~L~~~~  102 (353)
T 1i4w_A           39 TVYNKIFDKLDLTKTYKHPEELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKFLNAKF  102 (353)
T ss_dssp             HHHHHHHHHHCGGGTCCCTTTCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHHHHHHHHT
T ss_pred             HHHHHHHHhccCCcccCcCCCCEEEEECCCCCHHHHHHHhhCCCCEEEEEecCHHHHHHHHHhc
Confidence            3344555555433      357899999999999999998632248999999999998888765

>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1

Probab=95.60  E-value=0.0062  Score=38.83  Aligned_cols=33  Identities=18%  Similarity=0.436  Sum_probs=24.3

Q ss_pred             CceeCCCCCC-CccccCCCCcccccccCCcccccccccccccc
Q 019861           70 NVLACPICYK-PLTWIGDSSLSIESAAGSSLQCNTCKKTYSGV  111 (334)
Q Consensus        70 ~~l~CPiC~~-~l~~~~~~~~~~~~~~~~~~~C~~C~~~~~~~  111 (334)
                      ..+.||.|++ ++....         ..+.+.|..||.++...
T Consensus         4 ~~~~CP~C~~~~l~~d~---------~~gelvC~~CG~v~~e~   37 (50)
T 1pft_A            4 KQKVCPACESAELIYDP---------ERGEIVCAKCGYVIEEN   37 (50)
T ss_dssp             SCCSCTTTSCCCEEEET---------TTTEEEESSSCCBCCCC
T ss_pred             ccEeCcCCCCcceEEcC---------CCCeEECcccCCccccc
Confidence            4578999999 554432         23679999999988654

>3r24_A NSP16, 2'-O-methyl transferase; methyltransferase, zinc-finger, transferase, viral protein; HET: SAM; 2.00A {Sars coronavirus}

Probab=95.53  E-value=0.0065  Score=53.50  Aligned_cols=95  Identities=11%  Similarity=-0.006  Sum_probs=59.0

Q ss_pred             CCCCCcEEEECC------CcCHHHHHHHHcCCC-CeEEEEeCCHHHHHHHHHHHhcCC--CCCCCCceEEEeCcccc---
Q 019861          175 PVLGGNIIDASC------GSGLFSRIFAKSGLF-SLVVALDYSENMLKQCYEFVQQES--NFPKDSIDAVHAGAAIH---  242 (334)
Q Consensus       175 ~~~~~~vLDiGc------G~G~~~~~l~~~~~~-~~v~giD~s~~~~~~a~~~~~~~~--~~~~~~fD~V~~~~vl~---  242 (334)
                      -..+.+|||+|+      ..|.+  .+++.++. +.++++|+.+-... +...+..+.  ....++||+|++...-.   
T Consensus       107 vp~gmrVLDLGA~s~kg~APGS~--VLr~~~p~g~~VVavDL~~~~sd-a~~~IqGD~~~~~~~~k~DLVISDMAPNtTG  183 (344)
T 3r24_A          107 VPYNMRVIHFGAGSDKGVAPGTA--VLRQWLPTGTLLVDSDLNDFVSD-ADSTLIGDCATVHTANKWDLIISDMYDPRTK  183 (344)
T ss_dssp             CCTTCEEEEESCCCTTSBCHHHH--HHHHHSCTTCEEEEEESSCCBCS-SSEEEESCGGGEEESSCEEEEEECCCCTTSC
T ss_pred             ecCCCEEEeCCCCCCCCCCCcHH--HHHHhCCCCcEEEEeeCcccccC-CCeEEEccccccccCCCCCEEEecCCCCcCC
Confidence            345789999996      67773  44455664 48999999773311 000011110  11247899999864321   


Q ss_pred             CC--CC------HHHHHHHHHHcccCCcEEEEEEeccC
Q 019861          243 CW--SS------PSTGVAEISRVLRPGGVFVGTTYIVD  272 (334)
Q Consensus       243 h~--~d------~~~~L~~i~r~LkpgG~lii~~~~~~  272 (334)
                      +.  ..      -+.++.-+.++|+|||.+++-.+...
T Consensus       184 ~~D~d~~Rs~~L~ElALdfA~~~LkpGGsFvVKVFQGs  221 (344)
T 3r24_A          184 HVTKENDSKEGFFTYLCGFIKQKLALGGSIAVKITEHS  221 (344)
T ss_dssp             SSCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEEECSSS
T ss_pred             ccccchhHHHHHHHHHHHHHHHhCcCCCEEEEEEecCC
Confidence            11  11      24677778999999999999877643

>1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1

Probab=95.04  E-value=0.061  Score=49.77  Aligned_cols=96  Identities=16%  Similarity=0.102  Sum_probs=66.4

Q ss_pred             cCCCCCCcEEEECCCc-CHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhc-----CCC-C--------CCCCceEEEe
Q 019861          173 LKPVLGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQ-----ESN-F--------PKDSIDAVHA  237 (334)
Q Consensus       173 l~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~-----~~~-~--------~~~~fD~V~~  237 (334)
                      .+..++.+||-+|+|. |.++..+++......|+++|.++..++.+++.-..     ... +        ....+|+|+-
T Consensus       181 ~~~~~g~~VlV~GaG~vG~~aiqlAk~~Ga~~Vi~~~~~~~~~~~a~~lGa~~i~~~~~~~~~~~v~~~t~g~g~Dvvid  260 (398)
T 1kol_A          181 AGVGPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKAQGFEIADLSLDTPLHEQIAALLGEPEVDCAVD  260 (398)
T ss_dssp             TTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCEEEETTSSSCHHHHHHHHHSSSCEEEEEE
T ss_pred             cCCCCCCEEEEECCcHHHHHHHHHHHHCCCCeEEEEcCCHHHHHHHHHcCCcEEccCCcchHHHHHHHHhCCCCCCEEEE
Confidence            4556788999999876 77777777764223799999999998888753111     000 0        1236999997


Q ss_pred             Cccc---------cCCCCHHHHHHHHHHcccCCcEEEEEE
Q 019861          238 GAAI---------HCWSSPSTGVAEISRVLRPGGVFVGTT  268 (334)
Q Consensus       238 ~~vl---------~h~~d~~~~L~~i~r~LkpgG~lii~~  268 (334)
                      .-.-         .|.+++...++...+.|++||++++..
T Consensus       261 ~~G~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~G  300 (398)
T 1kol_A          261 AVGFEARGHGHEGAKHEAPATVLNSLMQVTRVAGKIGIPG  300 (398)
T ss_dssp             CCCTTCBCSSTTGGGSBCTTHHHHHHHHHEEEEEEEEECS
T ss_pred             CCCCcccccccccccccchHHHHHHHHHHHhcCCEEEEec
Confidence            5432         133456667899999999999987754

>1eg2_A Modification methylase RSRI; rossmann fold, exocyclic amino DNA methyltransferase RSRI, D binding, DNA modification, DNA methylation; HET: MTA; 1.75A {Rhodobacter sphaeroides} SCOP: c.66.1.11 PDB: 1nw5_A* 1nw6_A* 1nw7_A* 1nw8_A

Probab=94.88  E-value=0.068  Score=48.13  Aligned_cols=62  Identities=21%  Similarity=0.339  Sum_probs=49.6

Q ss_pred             CcHHHHHHHHcccCCCCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCH---HHHHHHHHHHhcCC
Q 019861          161 GPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSE---NMLKQCYEFVQQES  225 (334)
Q Consensus       161 ~~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~---~~~~~a~~~~~~~~  225 (334)
                      .|..+.+.+..... .++..|||.-||+|..+.+....+.  +++|+|+++   ..++.+++++....
T Consensus       227 kp~~l~~~~i~~~~-~~~~~vlDpF~GsGtt~~aa~~~~r--~~ig~e~~~~~~~~~~~~~~Rl~~~~  291 (319)
T 1eg2_A          227 KPAAVIERLVRALS-HPGSTVLDFFAGSGVTARVAIQEGR--NSICTDAAPVFKEYYQKQLTFLQDDG  291 (319)
T ss_dssp             CCHHHHHHHHHHHS-CTTCEEEETTCTTCHHHHHHHHHTC--EEEEEESSTHHHHHHHHHHHHC----
T ss_pred             CCHHHHHHHHHHhC-CCCCEEEecCCCCCHHHHHHHHcCC--cEEEEECCccHHHHHHHHHHHHHHcc
Confidence            45677777766654 4588999999999999999999887  999999999   99999999886543

>1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1

Probab=94.85  E-value=0.071  Score=48.82  Aligned_cols=93  Identities=16%  Similarity=0.135  Sum_probs=63.3

Q ss_pred             cccCCCCCCcEEEECCCc-CHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcC------CC-------CCCCCceEEE
Q 019861          171 GYLKPVLGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQE------SN-------FPKDSIDAVH  236 (334)
Q Consensus       171 ~~l~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~------~~-------~~~~~fD~V~  236 (334)
                      +.....++.+||-+|+|. |.++..+++......|+++|.++..++.+++.-...      ..       ...+.+|+|+
T Consensus       184 ~~~~~~~g~~VlV~GaG~vG~~a~qlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~~~~gg~D~vi  263 (371)
T 1f8f_A          184 NALKVTPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQLGATHVINSKTQDPVAAIKEITDGGVNFAL  263 (371)
T ss_dssp             TTTCCCTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHHTCSEEEETTTSCHHHHHHHHTTSCEEEEE
T ss_pred             hccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHcCCCEEecCCccCHHHHHHHhcCCCCcEEE
Confidence            344556789999999876 777777776532236999999999988887542110      00       1123689887


Q ss_pred             eCccccCCCCHHHHHHHHHHcccCCcEEEEEEe
Q 019861          237 AGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTY  269 (334)
Q Consensus       237 ~~~vl~h~~d~~~~L~~i~r~LkpgG~lii~~~  269 (334)
                      -.-.     . ...++...+.|+++|++++...
T Consensus       264 d~~g-----~-~~~~~~~~~~l~~~G~iv~~G~  290 (371)
T 1f8f_A          264 ESTG-----S-PEILKQGVDALGILGKIAVVGA  290 (371)
T ss_dssp             ECSC-----C-HHHHHHHHHTEEEEEEEEECCC
T ss_pred             ECCC-----C-HHHHHHHHHHHhcCCEEEEeCC
Confidence            5432     2 2458889999999999887543

>1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11

Probab=94.76  E-value=0.055  Score=48.78  Aligned_cols=60  Identities=12%  Similarity=0.040  Sum_probs=50.1

Q ss_pred             CcHHHHHHHHcccCCCCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhc
Q 019861          161 GPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQ  223 (334)
Q Consensus       161 ~~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~  223 (334)
                      .+..+.+.+.+... .++..|||.-||+|..+......+.  +++|+|+++...+.+++++..
T Consensus       237 kp~~l~~~~i~~~~-~~~~~VlDpF~GsGtt~~aa~~~gr--~~ig~e~~~~~~~~~~~r~~~  296 (323)
T 1boo_A          237 FPAKLPEFFIRMLT-EPDDLVVDIFGGSNTTGLVAERESR--KWISFEMKPEYVAASAFRFLD  296 (323)
T ss_dssp             CCTHHHHHHHHHHC-CTTCEEEETTCTTCHHHHHHHHTTC--EEEEEESCHHHHHHHHGGGSC
T ss_pred             CCHHHHHHHHHHhC-CCCCEEEECCCCCCHHHHHHHHcCC--CEEEEeCCHHHHHHHHHHHHh
Confidence            45566666666543 4588999999999999999999886  999999999999999988764

>2py6_A Methyltransferase FKBM; YP_546752.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.15A {Methylobacillus flagellatus KT} SCOP: c.66.1.56

Probab=94.56  E-value=0.075  Score=49.59  Aligned_cols=49  Identities=10%  Similarity=0.021  Sum_probs=41.3

Q ss_pred             CCCCCcEEEECCCcCHHHHHHH-HcCC-CCeEEEEeCCHHHHHHHHHHHhc
Q 019861          175 PVLGGNIIDASCGSGLFSRIFA-KSGL-FSLVVALDYSENMLKQCYEFVQQ  223 (334)
Q Consensus       175 ~~~~~~vLDiGcG~G~~~~~l~-~~~~-~~~v~giD~s~~~~~~a~~~~~~  223 (334)
                      ..++..++|||++.|.++..++ ..++ ..+|+++|+++...+..++++..
T Consensus       224 l~~~~~viDvGAn~G~~s~~~a~~~~~~~~~V~afEP~p~~~~~L~~n~~~  274 (409)
T 2py6_A          224 FSDSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINLQTLQNVLRR  274 (409)
T ss_dssp             CCSSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHHHHHHHHHHHHH
T ss_pred             cCCCCEEEECCCCcCHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHh
Confidence            3578899999999999999887 4443 36999999999999999888765

>3iei_A Leucine carboxyl methyltransferase 1; LCMT-1, S-adenosyl-L-methionine; HET: SAH MES; 1.90A {Homo sapiens} PDB: 3p71_T* 3mnt_A* 3o7w_A*

Probab=94.49  E-value=1.2  Score=40.22  Aligned_cols=136  Identities=10%  Similarity=0.088  Sum_probs=83.4

Q ss_pred             CCcEEEECCCcCHHHHHHHHcC-CCCeEEEEeCCHHHHHHHHHHHhc--------------------------CC-----
Q 019861          178 GGNIIDASCGSGLFSRIFAKSG-LFSLVVALDYSENMLKQCYEFVQQ--------------------------ES-----  225 (334)
Q Consensus       178 ~~~vLDiGcG~G~~~~~l~~~~-~~~~v~giD~s~~~~~~a~~~~~~--------------------------~~-----  225 (334)
                      ...|+-+|||.=.....+...+ +...++=+|. ++.++.=++.+..                          ..     
T Consensus        91 ~~QVV~LGaGlDTr~~RL~~~~~~~~~~~EVD~-P~vi~~K~~~l~~~~~l~~~lg~~~~~~~~~~~~~~l~s~~y~~v~  169 (334)
T 3iei_A           91 HCQIVNLGAGMDTTFWRLKDEDLLSSKYFEVDF-PMIVTRKLHSIKCKPPLSSPILELHSEDTLQMDGHILDSKRYAVIG  169 (334)
T ss_dssp             CSEEEEETCTTCCHHHHHHHTTCCCSEEEEEEC-HHHHHHHHHHHHHCHHHHHHHHHHSSSSSCBCCTTEEECSSEEEEE
T ss_pred             CCEEEEeCCCcCchHHHhcCCCCCCCeEEECCc-HHHHHHHHHHHhhchhhhhhhcccccccccccccccCCCCceEEEc
Confidence            5689999999877777776542 3457777886 4444433322221                          00     


Q ss_pred             ----------------CCCCCCceEEEeCccccCCCCH--HHHHHHHHHcccCCcEEEEEEeccCCCCCchHHHHHHHHH
Q 019861          226 ----------------NFPKDSIDAVHAGAAIHCWSSP--STGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQN  287 (334)
Q Consensus       226 ----------------~~~~~~fD~V~~~~vl~h~~d~--~~~L~~i~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~  287 (334)
                                      .++...-=++++-.+|.+++..  ..+|+.+.+.. |+|.+++.++...    ..++.+.+...
T Consensus       170 ~DL~d~~~l~~~L~~~g~d~~~Ptl~iaEGvL~YL~~~~~~~ll~~ia~~f-~~~~~i~yE~i~p----~d~fg~~M~~~  244 (334)
T 3iei_A          170 ADLRDLSELEEKLKKCNMNTQLPTLLIAECVLVYMTPEQSANLLKWAANSF-ERAMFINYEQVNM----GDRFGQIMIEN  244 (334)
T ss_dssp             CCTTCHHHHHHHHHHTTCCTTSCEEEEEESCGGGSCHHHHHHHHHHHHHHC-SSEEEEEEEECCT----TSHHHHHHHHH
T ss_pred             cccccchhHHHHHHhcCCCCCCCEEEEEchhhhCCCHHHHHHHHHHHHHhC-CCceEEEEeccCC----CCHHHHHHHHH
Confidence                            1222344477777888888633  46788888766 4566666666532    22444444333


Q ss_pred             hhh----hcCccCCCCHHHHHHHHHhCCCcEEEEee
Q 019861          288 MMQ----ISGSYTFLSEREIEDLCRACGLVDFKCTR  319 (334)
Q Consensus       288 ~~~----~~~~~~~~t~~~l~~ll~~~Gf~~v~~~~  319 (334)
                      +..    ..+...+.+.++..+.+.++||+.++...
T Consensus       245 l~~~g~pl~sl~~y~t~~~~~~r~~~~Gw~~~~~~d  280 (334)
T 3iei_A          245 LRRRQCDLAGVETCKSLESQKERLLSNGWETASAVD  280 (334)
T ss_dssp             HHTTTCCCTTGGGGGCHHHHHHHHHTTTCSEEEEEE
T ss_pred             HHHhCCCCcccccCCCHHHHHHHHHHcCCCcceeec
Confidence            322    12333567899999999999999876543

>4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A*

Probab=94.49  E-value=0.33  Score=44.40  Aligned_cols=92  Identities=16%  Similarity=0.140  Sum_probs=63.6

Q ss_pred             ccCCCCCCcEEEECCCc-CHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcC------C-------C---CCCCCceE
Q 019861          172 YLKPVLGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQE------S-------N---FPKDSIDA  234 (334)
Q Consensus       172 ~l~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~------~-------~---~~~~~fD~  234 (334)
                      .....++.+||-+|+|. |.++..+++......|+++|.++...+.+++.-...      .       .   ...+.+|+
T Consensus       177 ~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~i~~~~~~~~gg~Dv  256 (370)
T 4ej6_A          177 LSGIKAGSTVAILGGGVIGLLTVQLARLAGATTVILSTRQATKRRLAEEVGATATVDPSAGDVVEAIAGPVGLVPGGVDV  256 (370)
T ss_dssp             HHTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHHHHTCSEEECTTSSCHHHHHHSTTSSSTTCEEE
T ss_pred             hcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCCCEEECCCCcCHHHHHHhhhhccCCCCCE
Confidence            34556688999999875 667777777642238999999999888887642110      0       0   22347999


Q ss_pred             EEeCccccCCCCHHHHHHHHHHcccCCcEEEEEEe
Q 019861          235 VHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTY  269 (334)
Q Consensus       235 V~~~~vl~h~~d~~~~L~~i~r~LkpgG~lii~~~  269 (334)
                      |+-.-     .. ...++...+.|++||++++...
T Consensus       257 vid~~-----G~-~~~~~~~~~~l~~~G~vv~~G~  285 (370)
T 4ej6_A          257 VIECA-----GV-AETVKQSTRLAKAGGTVVILGV  285 (370)
T ss_dssp             EEECS-----CC-HHHHHHHHHHEEEEEEEEECSC
T ss_pred             EEECC-----CC-HHHHHHHHHHhccCCEEEEEec
Confidence            98643     22 2458889999999999888644

>3qv2_A 5-cytosine DNA methyltransferase; DNMT2, ehmeth; HET: SAH; 2.15A {Entamoeba histolytica}

Probab=93.86  E-value=1.1  Score=40.39  Aligned_cols=119  Identities=14%  Similarity=0.090  Sum_probs=76.1

Q ss_pred             CCcEEEECCCcCHHHHHHHHcCC-CCeE-EEEeCCHHHHHHHHHHHhcCC---C---C-----CCCCceEEEeCccccCC
Q 019861          178 GGNIIDASCGSGLFSRIFAKSGL-FSLV-VALDYSENMLKQCYEFVQQES---N---F-----PKDSIDAVHAGAAIHCW  244 (334)
Q Consensus       178 ~~~vLDiGcG~G~~~~~l~~~~~-~~~v-~giD~s~~~~~~a~~~~~~~~---~---~-----~~~~fD~V~~~~vl~h~  244 (334)
                      ..+++|+-||.|.+...+...|. ...+ .++|+++.+.+..+.++....   .   +     +...+|+++...--..+
T Consensus        10 ~~~vidLFaG~GG~~~G~~~aG~~~~~v~~a~e~d~~a~~ty~~N~~~~~~~~DI~~~~~~~i~~~~~Dil~ggpPCQ~f   89 (327)
T 3qv2_A           10 QVNVIEFFSGIGGLRSSYERSSININATFIPFDINEIANKIYSKNFKEEVQVKNLDSISIKQIESLNCNTWFMSPPCQPY   89 (327)
T ss_dssp             CEEEEEETCTTTHHHHHHHHSSCCCCEEEEEECCCHHHHHHHHHHHCCCCBCCCTTTCCHHHHHHTCCCEEEECCCCTTC
T ss_pred             CCEEEEECCChhHHHHHHHHcCCCceEEEEEEECCHHHHHHHHHHCCCCcccCChhhcCHHHhccCCCCEEEecCCccCc
Confidence            45899999999999999999884 2356 799999999998888875431   1   1     12268999975332222


Q ss_pred             -----------CCHH-HHHHHHHH-cccC---CcEEEEEEeccCCCCCchHHHHHHHHHhhhhcCccCCCCHHHHHHHHH
Q 019861          245 -----------SSPS-TGVAEISR-VLRP---GGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLCR  308 (334)
Q Consensus       245 -----------~d~~-~~L~~i~r-~Lkp---gG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~l~~ll~  308 (334)
                                 .|+. ..+.++.+ +++.   --.+++.+....-    ..                 .-+.+.+.+.|+
T Consensus        90 s~S~ag~~~~~~d~r~~L~~~~~r~~i~~~~~~P~~~~lENV~gl----~~-----------------~~~~~~i~~~l~  148 (327)
T 3qv2_A           90 NNSIMSKHKDINDPRAKSVLHLYRDILPYLINKPKHIFIENVPLF----KE-----------------SLVFKEIYNILI  148 (327)
T ss_dssp             SHHHHTTTCTTTCGGGHHHHHHHHTTGGGCSSCCSEEEEEECGGG----GG-----------------SHHHHHHHHHHH
T ss_pred             ccccCCCCCCCccccchhHHHHHHHHHHHhccCCCEEEEEchhhh----cC-----------------hHHHHHHHHHHH
Confidence                       3554 45555555 5432   1345554544310    00                 013467888899


Q ss_pred             hCCCcEEEE
Q 019861          309 ACGLVDFKC  317 (334)
Q Consensus       309 ~~Gf~~v~~  317 (334)
                      +.|+.+...
T Consensus       149 ~~GY~v~~~  157 (327)
T 3qv2_A          149 KNQYYIKDI  157 (327)
T ss_dssp             HTTCEEEEE
T ss_pred             hCCCEEEEE
Confidence            999987553

>1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1

Probab=93.80  E-value=0.12  Score=42.50  Aligned_cols=88  Identities=19%  Similarity=0.197  Sum_probs=57.8

Q ss_pred             ccCCCCCCcEEEECC--CcCHHHHHHHH-cCCCCeEEEEeCCHHHHHHHHHHHhcCC-----C----------CCCCCce
Q 019861          172 YLKPVLGGNIIDASC--GSGLFSRIFAK-SGLFSLVVALDYSENMLKQCYEFVQQES-----N----------FPKDSID  233 (334)
Q Consensus       172 ~l~~~~~~~vLDiGc--G~G~~~~~l~~-~~~~~~v~giD~s~~~~~~a~~~~~~~~-----~----------~~~~~fD  233 (334)
                      .....++.+||.+|+  |.|.....++. .|.  +|+++|.+++..+.+++. ....     .          ...+.+|
T Consensus        33 ~~~~~~g~~vlV~Ga~ggiG~~~~~~~~~~G~--~V~~~~~~~~~~~~~~~~-g~~~~~d~~~~~~~~~~~~~~~~~~~D  109 (198)
T 1pqw_A           33 VGRLSPGERVLIHSATGGVGMAAVSIAKMIGA--RIYTTAGSDAKREMLSRL-GVEYVGDSRSVDFADEILELTDGYGVD  109 (198)
T ss_dssp             TSCCCTTCEEEETTTTSHHHHHHHHHHHHHTC--EEEEEESSHHHHHHHHTT-CCSEEEETTCSTHHHHHHHHTTTCCEE
T ss_pred             HhCCCCCCEEEEeeCCChHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHHc-CCCEEeeCCcHHHHHHHHHHhCCCCCe
Confidence            345566889999995  34555444444 464  899999998877766542 1100     0          1123589


Q ss_pred             EEEeCccccCCCCHHHHHHHHHHcccCCcEEEEEEe
Q 019861          234 AVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTY  269 (334)
Q Consensus       234 ~V~~~~vl~h~~d~~~~L~~i~r~LkpgG~lii~~~  269 (334)
                      +|+....       ...++...+.|++||+++....
T Consensus       110 ~vi~~~g-------~~~~~~~~~~l~~~G~~v~~g~  138 (198)
T 1pqw_A          110 VVLNSLA-------GEAIQRGVQILAPGGRFIELGK  138 (198)
T ss_dssp             EEEECCC-------THHHHHHHHTEEEEEEEEECSC
T ss_pred             EEEECCc-------hHHHHHHHHHhccCCEEEEEcC
Confidence            9986543       1457889999999999887543

>1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A

Probab=93.79  E-value=0.23  Score=45.11  Aligned_cols=91  Identities=18%  Similarity=0.162  Sum_probs=61.3

Q ss_pred             cCCCCCCcEEEECCCc-CHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCC-CCC---------------CCCceEE
Q 019861          173 LKPVLGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES-NFP---------------KDSIDAV  235 (334)
Q Consensus       173 l~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~-~~~---------------~~~fD~V  235 (334)
                      .+..++.+||-+|+|. |.++..+++.....+|+++|.++..++.+++.-.... ...               .+.+|+|
T Consensus       167 ~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~i~~~~~~g~D~v  246 (356)
T 1pl8_A          167 GGVTLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEIGADLVLQISKESPQEIARKVEGQLGCKPEVT  246 (356)
T ss_dssp             HTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCSEEEECSSCCHHHHHHHHHHHHTSCCSEE
T ss_pred             cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCCEEEcCcccccchHHHHHHHHhCCCCCEE
Confidence            4556788999999875 7777777776422389999999988888875311100 000               1358888


Q ss_pred             EeCccccCCCCHHHHHHHHHHcccCCcEEEEEEe
Q 019861          236 HAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTY  269 (334)
Q Consensus       236 ~~~~vl~h~~d~~~~L~~i~r~LkpgG~lii~~~  269 (334)
                      +-.-     ..+ ..+....+.|++||+++....
T Consensus       247 id~~-----g~~-~~~~~~~~~l~~~G~iv~~G~  274 (356)
T 1pl8_A          247 IECT-----GAE-ASIQAGIYATRSGGTLVLVGL  274 (356)
T ss_dssp             EECS-----CCH-HHHHHHHHHSCTTCEEEECSC
T ss_pred             EECC-----CCh-HHHHHHHHHhcCCCEEEEEec
Confidence            7543     222 357888999999999887543

>3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A*

Probab=93.37  E-value=0.24  Score=44.59  Aligned_cols=90  Identities=16%  Similarity=0.148  Sum_probs=62.1

Q ss_pred             ccCCCCCCcEEEECCCc-CHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCC------CC------CCCCceEEEeC
Q 019861          172 YLKPVLGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES------NF------PKDSIDAVHAG  238 (334)
Q Consensus       172 ~l~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~------~~------~~~~fD~V~~~  238 (334)
                      .....++.+||-+|+|. |.++..+++.. ..+|+++|.++..++.+++.-....      .+      ..+.+|+|+-.
T Consensus       161 ~~~~~~g~~VlV~GaG~vG~~a~qla~~~-Ga~Vi~~~~~~~~~~~~~~lGa~~~i~~~~~~~~~~~~~~~g~~d~vid~  239 (340)
T 3s2e_A          161 VTDTRPGQWVVISGIGGLGHVAVQYARAM-GLRVAAVDIDDAKLNLARRLGAEVAVNARDTDPAAWLQKEIGGAHGVLVT  239 (340)
T ss_dssp             TTTCCTTSEEEEECCSTTHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHTTCSEEEETTTSCHHHHHHHHHSSEEEEEES
T ss_pred             HcCCCCCCEEEEECCCHHHHHHHHHHHHC-CCeEEEEeCCHHHHHHHHHcCCCEEEeCCCcCHHHHHHHhCCCCCEEEEe
Confidence            33556788999999975 77777777764 3499999999999888876321100      00      01257888754


Q ss_pred             ccccCCCCHHHHHHHHHHcccCCcEEEEEE
Q 019861          239 AAIHCWSSPSTGVAEISRVLRPGGVFVGTT  268 (334)
Q Consensus       239 ~vl~h~~d~~~~L~~i~r~LkpgG~lii~~  268 (334)
                      ..     . ...++.+.+.|+++|++++..
T Consensus       240 ~g-----~-~~~~~~~~~~l~~~G~iv~~G  263 (340)
T 3s2e_A          240 AV-----S-PKAFSQAIGMVRRGGTIALNG  263 (340)
T ss_dssp             SC-----C-HHHHHHHHHHEEEEEEEEECS
T ss_pred             CC-----C-HHHHHHHHHHhccCCEEEEeC
Confidence            32     2 346888999999999988754

>1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A*

Probab=93.34  E-value=0.26  Score=44.21  Aligned_cols=88  Identities=14%  Similarity=0.092  Sum_probs=59.2

Q ss_pred             cccCCCCCCcEEEECC--CcCHHHHHHHHc-CCCCeEEEEeCCHHHHHHHHHHHhcCC--CC-------------CCCCc
Q 019861          171 GYLKPVLGGNIIDASC--GSGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQQES--NF-------------PKDSI  232 (334)
Q Consensus       171 ~~l~~~~~~~vLDiGc--G~G~~~~~l~~~-~~~~~v~giD~s~~~~~~a~~~~~~~~--~~-------------~~~~f  232 (334)
                      +.....++.+||-.|+  |.|..+..++.. |.  +|+++|.++..++.+++ +....  ..             ..+.+
T Consensus       139 ~~~~~~~g~~vlV~Ga~ggiG~~~~~~~~~~G~--~V~~~~~~~~~~~~~~~-~g~~~~~d~~~~~~~~~~~~~~~~~~~  215 (333)
T 1v3u_A          139 EVCGVKGGETVLVSAAAGAVGSVVGQIAKLKGC--KVVGAAGSDEKIAYLKQ-IGFDAAFNYKTVNSLEEALKKASPDGY  215 (333)
T ss_dssp             TTSCCCSSCEEEEESTTBHHHHHHHHHHHHTTC--EEEEEESSHHHHHHHHH-TTCSEEEETTSCSCHHHHHHHHCTTCE
T ss_pred             HhhCCCCCCEEEEecCCCcHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHh-cCCcEEEecCCHHHHHHHHHHHhCCCC
Confidence            3445567889999998  445555555543 54  99999999988887743 22110  00             11468


Q ss_pred             eEEEeCccccCCCCHHHHHHHHHHcccCCcEEEEEE
Q 019861          233 DAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTT  268 (334)
Q Consensus       233 D~V~~~~vl~h~~d~~~~L~~i~r~LkpgG~lii~~  268 (334)
                      |+|+.+..-       ..++...+.|++||++++..
T Consensus       216 d~vi~~~g~-------~~~~~~~~~l~~~G~~v~~g  244 (333)
T 1v3u_A          216 DCYFDNVGG-------EFLNTVLSQMKDFGKIAICG  244 (333)
T ss_dssp             EEEEESSCH-------HHHHHHHTTEEEEEEEEECC
T ss_pred             eEEEECCCh-------HHHHHHHHHHhcCCEEEEEe
Confidence            998876542       34788889999999988754

>1vq8_Z 50S ribosomal protein L37AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1vq4_Z* 1vq6_Z* 1vq5_Z* 1vq7_Z* 1vq9_Z* 1vqk_Z* 1vql_Z* 1vqm_Z* 1vqn_Z* 1vqo_Z* 1vqp_Z* 1yhq_Z* 1yi2_Z* 1yij_Z* 1yit_Z* 1yj9_Z* 1yjn_Z* 1yjw_Z* 2qa4_Z* 1s72_Z* ...

Probab=93.18  E-value=0.024  Score=40.13  Aligned_cols=32  Identities=25%  Similarity=0.477  Sum_probs=23.7

Q ss_pred             CceeCCCCCCCccccCCCCcccccccCCccccccccccccc
Q 019861           70 NVLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSG  110 (334)
Q Consensus        70 ~~l~CPiC~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~~~  110 (334)
                      ..+.||.||..+....         ..+.|.|+.|+..+..
T Consensus        26 ~~y~Cp~CG~~~v~r~---------atGiW~C~~Cg~~~ag   57 (83)
T 1vq8_Z           26 EDHACPNCGEDRVDRQ---------GTGIWQCSYCDYKFTG   57 (83)
T ss_dssp             SCEECSSSCCEEEEEE---------ETTEEEETTTCCEEEC
T ss_pred             ccCcCCCCCCcceecc---------CCCeEECCCCCCEecC
Confidence            3589999999654432         3378999999987643

>2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida}

Probab=93.17  E-value=0.15  Score=47.08  Aligned_cols=97  Identities=18%  Similarity=0.111  Sum_probs=64.5

Q ss_pred             ccCCCCCCcEEEECCCc-CHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhc-----CCCC---------CCCCceEEE
Q 019861          172 YLKPVLGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQ-----ESNF---------PKDSIDAVH  236 (334)
Q Consensus       172 ~l~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~-----~~~~---------~~~~fD~V~  236 (334)
                      ..+..++.+||-+|+|. |.++..+++.....+|+++|.++..++.+++.-..     ...+         ....+|+|+
T Consensus       180 ~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~i~~~~~~~~~~~~~~~~~g~g~Dvvi  259 (398)
T 2dph_A          180 SAGVKPGSHVYIAGAGPVGRCAAAGARLLGAACVIVGDQNPERLKLLSDAGFETIDLRNSAPLRDQIDQILGKPEVDCGV  259 (398)
T ss_dssp             HTTCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHTTTCEEEETTSSSCHHHHHHHHHSSSCEEEEE
T ss_pred             HcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCCcEEcCCCcchHHHHHHHHhCCCCCCEEE
Confidence            44566789999999976 77777777753223899999999988888753110     0111         112589998


Q ss_pred             eCccccCC--------CCHHHHHHHHHHcccCCcEEEEEE
Q 019861          237 AGAAIHCW--------SSPSTGVAEISRVLRPGGVFVGTT  268 (334)
Q Consensus       237 ~~~vl~h~--------~d~~~~L~~i~r~LkpgG~lii~~  268 (334)
                      -.-.-...        .++...+++..+.|++||++++.-
T Consensus       260 d~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~gG~iv~~G  299 (398)
T 2dph_A          260 DAVGFEAHGLGDEANTETPNGALNSLFDVVRAGGAIGIPG  299 (398)
T ss_dssp             ECSCTTCBCSGGGTTSBCTTHHHHHHHHHEEEEEEEECCS
T ss_pred             ECCCCccccccccccccccHHHHHHHHHHHhcCCEEEEec
Confidence            65432210        023356889999999999987643

>4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A*

Probab=92.71  E-value=0.21  Score=44.86  Aligned_cols=91  Identities=11%  Similarity=-0.003  Sum_probs=61.7

Q ss_pred             cccCCCCCCcEEEECC--CcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCC-------C-------CCCCCceE
Q 019861          171 GYLKPVLGGNIIDASC--GSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES-------N-------FPKDSIDA  234 (334)
Q Consensus       171 ~~l~~~~~~~vLDiGc--G~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~-------~-------~~~~~fD~  234 (334)
                      +.....++.+||-+|+  |.|..+..+++.. ..+|+++|.++..++.+.+.+....       .       ...+.+|+
T Consensus       143 ~~~~~~~g~~vlI~Ga~g~iG~~~~~~a~~~-Ga~Vi~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~  221 (336)
T 4b7c_A          143 DVGQPKNGETVVISGAAGAVGSVAGQIARLK-GCRVVGIAGGAEKCRFLVEELGFDGAIDYKNEDLAAGLKRECPKGIDV  221 (336)
T ss_dssp             HTTCCCTTCEEEESSTTSHHHHHHHHHHHHT-TCEEEEEESSHHHHHHHHHTTCCSEEEETTTSCHHHHHHHHCTTCEEE
T ss_pred             HhcCCCCCCEEEEECCCCHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHcCCCEEEECCCHHHHHHHHHhcCCCceE
Confidence            4455667899999998  3466666666543 2499999999988888743332110       0       01246898


Q ss_pred             EEeCccccCCCCHHHHHHHHHHcccCCcEEEEEEe
Q 019861          235 VHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTY  269 (334)
Q Consensus       235 V~~~~vl~h~~d~~~~L~~i~r~LkpgG~lii~~~  269 (334)
                      |+....-       ..+....+.|+++|++++...
T Consensus       222 vi~~~g~-------~~~~~~~~~l~~~G~iv~~G~  249 (336)
T 4b7c_A          222 FFDNVGG-------EILDTVLTRIAFKARIVLCGA  249 (336)
T ss_dssp             EEESSCH-------HHHHHHHTTEEEEEEEEECCC
T ss_pred             EEECCCc-------chHHHHHHHHhhCCEEEEEee
Confidence            8865431       368889999999999887543

>3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A

Probab=92.68  E-value=0.31  Score=44.16  Aligned_cols=92  Identities=15%  Similarity=0.176  Sum_probs=63.3

Q ss_pred             cccCCCCCCcEEEECCCc-CHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcC------CC--------CCCCCceEE
Q 019861          171 GYLKPVLGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQE------SN--------FPKDSIDAV  235 (334)
Q Consensus       171 ~~l~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~------~~--------~~~~~fD~V  235 (334)
                      +.....++.+||-+|+|. |.++..+++.....+|+++|.++..++.+++.-...      ..        .....+|+|
T Consensus       160 ~~~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~v~~~t~g~g~D~v  239 (352)
T 3fpc_A          160 ELANIKLGDTVCVIGIGPVGLMSVAGANHLGAGRIFAVGSRKHCCDIALEYGATDIINYKNGDIVEQILKATDGKGVDKV  239 (352)
T ss_dssp             HHTTCCTTCCEEEECCSHHHHHHHHHHHTTTCSSEEEECCCHHHHHHHHHHTCCEEECGGGSCHHHHHHHHTTTCCEEEE
T ss_pred             HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCCceEEcCCCcCHHHHHHHHcCCCCCCEE
Confidence            344566789999999875 677777777642237999999999888887642211      00        112369999


Q ss_pred             EeCccccCCCCHHHHHHHHHHcccCCcEEEEEE
Q 019861          236 HAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTT  268 (334)
Q Consensus       236 ~~~~vl~h~~d~~~~L~~i~r~LkpgG~lii~~  268 (334)
                      +-.-.     .+ ..++...+.|++||+++..-
T Consensus       240 ~d~~g-----~~-~~~~~~~~~l~~~G~~v~~G  266 (352)
T 3fpc_A          240 VIAGG-----DV-HTFAQAVKMIKPGSDIGNVN  266 (352)
T ss_dssp             EECSS-----CT-THHHHHHHHEEEEEEEEECC
T ss_pred             EECCC-----Ch-HHHHHHHHHHhcCCEEEEec
Confidence            86432     22 35788999999999988754

>1dl6_A Transcription factor II B (TFIIB); zinc ribbon, gene regulation; NMR {Homo sapiens} SCOP: g.41.3.1 PDB: 1rly_A 1ro4_A

Probab=92.52  E-value=0.063  Score=35.23  Aligned_cols=32  Identities=16%  Similarity=0.222  Sum_probs=22.6

Q ss_pred             CceeCCCCCC-CccccCCCCcccccccCCccccccccccccc
Q 019861           70 NVLACPICYK-PLTWIGDSSLSIESAAGSSLQCNTCKKTYSG  110 (334)
Q Consensus        70 ~~l~CPiC~~-~l~~~~~~~~~~~~~~~~~~~C~~C~~~~~~  110 (334)
                      ..+.||.|+. ++....         ..+.+.|..||.++..
T Consensus        10 ~~~~Cp~C~~~~lv~D~---------~~ge~vC~~CGlVl~e   42 (58)
T 1dl6_A           10 PRVTCPNHPDAILVEDY---------RAGDMICPECGLVVGD   42 (58)
T ss_dssp             SCCSBTTBSSSCCEECS---------SSCCEECTTTCCEECC
T ss_pred             ccccCcCCCCCceeEeC---------CCCeEEeCCCCCEEec
Confidence            4468999998 433322         3367999999998754

>3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021}

Probab=92.49  E-value=0.41  Score=43.57  Aligned_cols=92  Identities=15%  Similarity=0.174  Sum_probs=63.3

Q ss_pred             cccCCCCCCcEEEECCCc-CHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcC------CC--------CCCCCceEE
Q 019861          171 GYLKPVLGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQE------SN--------FPKDSIDAV  235 (334)
Q Consensus       171 ~~l~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~------~~--------~~~~~fD~V  235 (334)
                      +.....++.+||-+|+|. |.++..+++.. ..+|+++|.++..++.+++.-...      ..        .....+|+|
T Consensus       183 ~~~~~~~g~~VlV~G~G~vG~~a~qla~~~-Ga~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~v~~~~~g~g~D~v  261 (363)
T 3uog_A          183 EKGHLRAGDRVVVQGTGGVALFGLQIAKAT-GAEVIVTSSSREKLDRAFALGADHGINRLEEDWVERVYALTGDRGADHI  261 (363)
T ss_dssp             TTTCCCTTCEEEEESSBHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHTCSEEEETTTSCHHHHHHHHHTTCCEEEE
T ss_pred             HhcCCCCCCEEEEECCCHHHHHHHHHHHHc-CCEEEEEecCchhHHHHHHcCCCEEEcCCcccHHHHHHHHhCCCCceEE
Confidence            445666789999999775 66666666653 349999999999888887642110      00        012369999


Q ss_pred             EeCccccCCCCHHHHHHHHHHcccCCcEEEEEEec
Q 019861          236 HAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYI  270 (334)
Q Consensus       236 ~~~~vl~h~~d~~~~L~~i~r~LkpgG~lii~~~~  270 (334)
                      +-.-.-       ..+....+.|+++|++++....
T Consensus       262 id~~g~-------~~~~~~~~~l~~~G~iv~~G~~  289 (363)
T 3uog_A          262 LEIAGG-------AGLGQSLKAVAPDGRISVIGVL  289 (363)
T ss_dssp             EEETTS-------SCHHHHHHHEEEEEEEEEECCC
T ss_pred             EECCCh-------HHHHHHHHHhhcCCEEEEEecC
Confidence            865431       2377788999999998886543

>3j20_Y 30S ribosomal protein S27AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}

Probab=92.38  E-value=0.047  Score=34.63  Aligned_cols=30  Identities=23%  Similarity=0.393  Sum_probs=21.3

Q ss_pred             ceeCCCCCCCccccCCCCcccccccCCcccccccccccc
Q 019861           71 VLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYS  109 (334)
Q Consensus        71 ~l~CPiC~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~~  109 (334)
                      .--||.||+......         ....++|+.||.++-
T Consensus        19 ~k~CP~CG~~~fm~~---------~~~R~~C~kCG~t~~   48 (50)
T 3j20_Y           19 NKFCPRCGPGVFMAD---------HGDRWACGKCGYTEW   48 (50)
T ss_dssp             SEECSSSCSSCEEEE---------CSSEEECSSSCCEEE
T ss_pred             cccCCCCCCceEEec---------CCCeEECCCCCCEEE
Confidence            355999999754432         226799999998763

>3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori}

Probab=92.25  E-value=0.29  Score=44.26  Aligned_cols=87  Identities=14%  Similarity=0.135  Sum_probs=60.9

Q ss_pred             CCCCCCcEEEECCCc-CHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCC------CCCCCCceEEEeCccccCCCC
Q 019861          174 KPVLGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES------NFPKDSIDAVHAGAAIHCWSS  246 (334)
Q Consensus       174 ~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~------~~~~~~fD~V~~~~vl~h~~d  246 (334)
                      +..++.+||-+|+|. |.++..+++.. ..+|+++|.++..++.+++. ....      .+.. .+|+|+-.-.-.    
T Consensus       173 ~~~~g~~VlV~GaG~vG~~a~qla~~~-Ga~Vi~~~~~~~~~~~~~~l-Ga~~v~~~~~~~~~-~~D~vid~~g~~----  245 (348)
T 3two_A          173 KVTKGTKVGVAGFGGLGSMAVKYAVAM-GAEVSVFARNEHKKQDALSM-GVKHFYTDPKQCKE-ELDFIISTIPTH----  245 (348)
T ss_dssp             TCCTTCEEEEESCSHHHHHHHHHHHHT-TCEEEEECSSSTTHHHHHHT-TCSEEESSGGGCCS-CEEEEEECCCSC----
T ss_pred             CCCCCCEEEEECCcHHHHHHHHHHHHC-CCeEEEEeCCHHHHHHHHhc-CCCeecCCHHHHhc-CCCEEEECCCcH----
Confidence            556789999999875 67777777653 34999999999888888763 2111      1122 688888643322    


Q ss_pred             HHHHHHHHHHcccCCcEEEEEEe
Q 019861          247 PSTGVAEISRVLRPGGVFVGTTY  269 (334)
Q Consensus       247 ~~~~L~~i~r~LkpgG~lii~~~  269 (334)
                        ..+....+.|+++|++++...
T Consensus       246 --~~~~~~~~~l~~~G~iv~~G~  266 (348)
T 3two_A          246 --YDLKDYLKLLTYNGDLALVGL  266 (348)
T ss_dssp             --CCHHHHHTTEEEEEEEEECCC
T ss_pred             --HHHHHHHHHHhcCCEEEEECC
Confidence              137788899999999988643

>2oo3_A Protein involved in catabolism of external DNA; structural genomics, unknown function, PSI-2, protein structure initiative; 2.00A {Legionella pneumophila subsp} SCOP: c.66.1.59

Probab=92.14  E-value=0.24  Score=43.57  Aligned_cols=103  Identities=9%  Similarity=0.005  Sum_probs=73.0

Q ss_pred             HHHHHHHcccCCCCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCCC----------------C
Q 019861          164 KEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESN----------------F  227 (334)
Q Consensus       164 ~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~----------------~  227 (334)
                      ..++.+.. +   .+..+||+=+|+|.++..+...+  .+++.+|.++...+..++++.....                -
T Consensus        82 ~yf~~l~~-~---n~~~~LDlfaGSGaLgiEaLS~~--d~~vfvE~~~~a~~~L~~Nl~~~~~~~V~~~D~~~~L~~l~~  155 (283)
T 2oo3_A           82 EYISVIKQ-I---NLNSTLSYYPGSPYFAINQLRSQ--DRLYLCELHPTEYNFLLKLPHFNKKVYVNHTDGVSKLNALLP  155 (283)
T ss_dssp             HHHHHHHH-H---SSSSSCCEEECHHHHHHHHSCTT--SEEEEECCSHHHHHHHTTSCCTTSCEEEECSCHHHHHHHHCS
T ss_pred             HHHHHHHH-h---cCCCceeEeCCcHHHHHHHcCCC--CeEEEEeCCHHHHHHHHHHhCcCCcEEEEeCcHHHHHHHhcC
Confidence            44555555 2   24679999999999999998855  4999999999999998887654220                1


Q ss_pred             CCCCceEEEeCccccCCCCHHHHHHHHHH--cccCCcEEEEEEeccC
Q 019861          228 PKDSIDAVHAGAAIHCWSSPSTGVAEISR--VLRPGGVFVGTTYIVD  272 (334)
Q Consensus       228 ~~~~fD~V~~~~vl~h~~d~~~~L~~i~r--~LkpgG~lii~~~~~~  272 (334)
                      +..+||+|++.=-.+.-.+...+++.+.+  .+.|+|++++-.|..+
T Consensus       156 ~~~~fdLVfiDPPYe~k~~~~~vl~~L~~~~~r~~~Gi~v~WYPi~~  202 (283)
T 2oo3_A          156 PPEKRGLIFIDPSYERKEEYKEIPYAIKNAYSKFSTGLYCVWYPVVN  202 (283)
T ss_dssp             CTTSCEEEEECCCCCSTTHHHHHHHHHHHHHHHCTTSEEEEEEEESS
T ss_pred             CCCCccEEEECCCCCCCcHHHHHHHHHHHhCccCCCeEEEEEEeccc
Confidence            23469999986544433345566666665  4568999998877754

>3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa}

Probab=92.12  E-value=0.57  Score=42.51  Aligned_cols=90  Identities=20%  Similarity=0.184  Sum_probs=63.2

Q ss_pred             ccCCCCCCcEEEECCCc-CHHHHHHHHcCCCCe-EEEEeCCHHHHHHHHHHHhcCC-------------------CCCCC
Q 019861          172 YLKPVLGGNIIDASCGS-GLFSRIFAKSGLFSL-VVALDYSENMLKQCYEFVQQES-------------------NFPKD  230 (334)
Q Consensus       172 ~l~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~-v~giD~s~~~~~~a~~~~~~~~-------------------~~~~~  230 (334)
                      ..+..++.+||-+|+|. |.++..+++.. ..+ |+++|.++..++.+++. ....                   .....
T Consensus       174 ~~~~~~g~~VlV~GaG~vG~~aiqlak~~-Ga~~Vi~~~~~~~~~~~a~~l-~~~~~~~~~~~~~~~~~~~~v~~~t~g~  251 (363)
T 3m6i_A          174 RAGVRLGDPVLICGAGPIGLITMLCAKAA-GACPLVITDIDEGRLKFAKEI-CPEVVTHKVERLSAEESAKKIVESFGGI  251 (363)
T ss_dssp             HHTCCTTCCEEEECCSHHHHHHHHHHHHT-TCCSEEEEESCHHHHHHHHHH-CTTCEEEECCSCCHHHHHHHHHHHTSSC
T ss_pred             HcCCCCCCEEEEECCCHHHHHHHHHHHHc-CCCEEEEECCCHHHHHHHHHh-chhcccccccccchHHHHHHHHHHhCCC
Confidence            34556788999999875 67777777664 234 99999999999988876 3111                   01134


Q ss_pred             CceEEEeCccccCCCCHHHHHHHHHHcccCCcEEEEEEe
Q 019861          231 SIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTY  269 (334)
Q Consensus       231 ~fD~V~~~~vl~h~~d~~~~L~~i~r~LkpgG~lii~~~  269 (334)
                      .+|+|+-.-.     .+ ..+....+.|++||++++...
T Consensus       252 g~Dvvid~~g-----~~-~~~~~~~~~l~~~G~iv~~G~  284 (363)
T 3m6i_A          252 EPAVALECTG-----VE-SSIAAAIWAVKFGGKVFVIGV  284 (363)
T ss_dssp             CCSEEEECSC-----CH-HHHHHHHHHSCTTCEEEECCC
T ss_pred             CCCEEEECCC-----Ch-HHHHHHHHHhcCCCEEEEEcc
Confidence            6888886432     22 357888999999999987644

>1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=92.10  E-value=0.48  Score=43.29  Aligned_cols=86  Identities=16%  Similarity=0.151  Sum_probs=59.6

Q ss_pred             CCCCCCcEEEECCCc-CHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCC-----------CCCCCCceEEEeCccc
Q 019861          174 KPVLGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES-----------NFPKDSIDAVHAGAAI  241 (334)
Q Consensus       174 ~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~-----------~~~~~~fD~V~~~~vl  241 (334)
                      +..++.+||-+|+|. |.++..+++.. ..+|+++|.++..++.+++. ....           ... +.+|+|+-.-.-
T Consensus       191 ~~~~g~~VlV~GaG~vG~~aiqlak~~-Ga~Vi~~~~~~~~~~~a~~l-Ga~~vi~~~~~~~~~~~~-~g~Dvvid~~g~  267 (369)
T 1uuf_A          191 QAGPGKKVGVVGIGGLGHMGIKLAHAM-GAHVVAFTTSEAKREAAKAL-GADEVVNSRNADEMAAHL-KSFDFILNTVAA  267 (369)
T ss_dssp             TCCTTCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESSGGGHHHHHHH-TCSEEEETTCHHHHHTTT-TCEEEEEECCSS
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHc-CCcEEeccccHHHHHHhh-cCCCEEEECCCC
Confidence            556788999999875 66676776653 34899999999888888753 2111           111 468998865432


Q ss_pred             cCCCCHHHHHHHHHHcccCCcEEEEEE
Q 019861          242 HCWSSPSTGVAEISRVLRPGGVFVGTT  268 (334)
Q Consensus       242 ~h~~d~~~~L~~i~r~LkpgG~lii~~  268 (334)
                      .      ..++...+.|+++|+++...
T Consensus       268 ~------~~~~~~~~~l~~~G~iv~~G  288 (369)
T 1uuf_A          268 P------HNLDDFTTLLKRDGTMTLVG  288 (369)
T ss_dssp             C------CCHHHHHTTEEEEEEEEECC
T ss_pred             H------HHHHHHHHHhccCCEEEEec
Confidence            1      13677889999999988743

>3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A*

Probab=91.73  E-value=0.96  Score=44.82  Aligned_cols=122  Identities=15%  Similarity=0.119  Sum_probs=73.6

Q ss_pred             CCcEEEECCCcCHHHHHHHHc------------CCCCeEEEEeC---CHHHHHHHHHH-----------HhcCC------
Q 019861          178 GGNIIDASCGSGLFSRIFAKS------------GLFSLVVALDY---SENMLKQCYEF-----------VQQES------  225 (334)
Q Consensus       178 ~~~vLDiGcG~G~~~~~l~~~------------~~~~~v~giD~---s~~~~~~a~~~-----------~~~~~------  225 (334)
                      .-+|||+|-|+|.......+.            ....+++++|.   +.+.+..+-..           .....      
T Consensus        67 ~~~i~e~gfG~Gln~l~~~~~~~~~~~~~p~~~~~~l~~~s~E~~p~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~  146 (676)
T 3ps9_A           67 LFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLPGC  146 (676)
T ss_dssp             EEEEEEECCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHHCCCCCSEE
T ss_pred             ceEEEEeCCchHHHHHHHHHHHHHhhhhCcCCCCceEEEEEEeCCCCCHHHHHHHHHhChhhHHHHHHHHHhCcccCCCc
Confidence            459999999999765444332            11246899998   77666643321           11110      


Q ss_pred             ------------------------CCC---CCCceEEEeCccccCCCCH----HHHHHHHHHcccCCcEEEEEEeccCCC
Q 019861          226 ------------------------NFP---KDSIDAVHAGAAIHCWSSP----STGVAEISRVLRPGGVFVGTTYIVDGP  274 (334)
Q Consensus       226 ------------------------~~~---~~~fD~V~~~~vl~h~~d~----~~~L~~i~r~LkpgG~lii~~~~~~~~  274 (334)
                                              .+.   ...||+|+....-- -.+|    ..+++.+.++++|||.+..  .     
T Consensus       147 ~~~~~~~~~~~l~l~~gd~~~~l~~~~~~~~~~~d~~~~D~f~p-~~np~~w~~~~~~~l~~~~~~g~~~~t--~-----  218 (676)
T 3ps9_A          147 HRLLLDAGRVTLDLWFGDINELTSQLDDSLNQKVDAWFLDGFAP-AKNPDMWTQNLFNAMARLARPGGTLAT--F-----  218 (676)
T ss_dssp             EEEEEGGGTEEEEEEESCHHHHGGGBCGGGTTCEEEEEECCSCG-GGCGGGSCHHHHHHHHHHEEEEEEEEE--S-----
T ss_pred             eEEEecCCcEEEEEecCCHHHHHHhcccccCCcccEEEECCCCC-cCChhhhhHHHHHHHHHHhCCCCEEEe--c-----
Confidence                                    011   35688887754211 1244    4678899999999887653  1     


Q ss_pred             CCchHHHHHHHHHhhhhcCccCCCCHHHHHHHHHhCCCcEEEEeec-CcEEEEEEEc
Q 019861          275 FNLIPFSRLLRQNMMQISGSYTFLSEREIEDLCRACGLVDFKCTRN-RGFVMFTATK  330 (334)
Q Consensus       275 ~~~~~~~~~~~~~~~~~~~~~~~~t~~~l~~ll~~~Gf~~v~~~~~-g~~~~~~a~K  330 (334)
                                             -....+++.|+++||.+.+.... +..-+..+.+
T Consensus       219 -----------------------~~~~~vr~~L~~aGf~v~~~~~~g~krem~~~~~  252 (676)
T 3ps9_A          219 -----------------------TSAGFVRRGLQDAGFTMQKRKGFGRKREMLCGVM  252 (676)
T ss_dssp             -----------------------CCCHHHHHHHHHHTCEEEEEECSTTCCEEEEEEC
T ss_pred             -----------------------cCcHHHHHHHHhCCeEEEeccccccchhhhheec
Confidence                                   12247888899999987764433 2444555444

>1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1

Probab=91.70  E-value=0.7  Score=42.11  Aligned_cols=92  Identities=15%  Similarity=0.108  Sum_probs=61.2

Q ss_pred             cccCCCCCCcEEEECCCc-CHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcC--------CCC-------CCCCceE
Q 019861          171 GYLKPVLGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQE--------SNF-------PKDSIDA  234 (334)
Q Consensus       171 ~~l~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~--------~~~-------~~~~fD~  234 (334)
                      +..+..++.+||-+|+|. |.++..+++.....+|+++|.++..++.+++.-...        ..+       ..+.+|+
T Consensus       186 ~~~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~~~~~~~~g~D~  265 (374)
T 1cdo_A          186 NTAKVEPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKVFGATDFVNPNDHSEPISQVLSKMTNGGVDF  265 (374)
T ss_dssp             TTTCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCCEEECGGGCSSCHHHHHHHHHTSCBSE
T ss_pred             hccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHhCCceEEeccccchhHHHHHHHHhCCCCCE
Confidence            344556788999999865 666777776642237999999999888887531110        000       0135888


Q ss_pred             EEeCccccCCCCHHHHHHHHHHcccCC-cEEEEEE
Q 019861          235 VHAGAAIHCWSSPSTGVAEISRVLRPG-GVFVGTT  268 (334)
Q Consensus       235 V~~~~vl~h~~d~~~~L~~i~r~Lkpg-G~lii~~  268 (334)
                      |+-.-.     . ...++...+.|+++ |++++..
T Consensus       266 vid~~g-----~-~~~~~~~~~~l~~~~G~iv~~G  294 (374)
T 1cdo_A          266 SLECVG-----N-VGVMRNALESCLKGWGVSVLVG  294 (374)
T ss_dssp             EEECSC-----C-HHHHHHHHHTBCTTTCEEEECS
T ss_pred             EEECCC-----C-HHHHHHHHHHhhcCCcEEEEEc
Confidence            875432     2 24578899999999 9988754

>3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis}

Probab=91.57  E-value=0.27  Score=44.34  Aligned_cols=93  Identities=15%  Similarity=0.133  Sum_probs=60.9

Q ss_pred             HHcccCCCCCCcEEEECCC--cCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcC------CC--------CCCCCc
Q 019861          169 MKGYLKPVLGGNIIDASCG--SGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQE------SN--------FPKDSI  232 (334)
Q Consensus       169 l~~~l~~~~~~~vLDiGcG--~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~------~~--------~~~~~f  232 (334)
                      +.+.....++.+||-+|+|  .|..+..+++.. ..+|+++|.++..++.+++.-...      ..        .....+
T Consensus       136 ~~~~~~~~~g~~VlV~Ga~g~iG~~~~~~a~~~-Ga~Vi~~~~~~~~~~~~~~lga~~~~~~~~~~~~~~~~~~~~~~g~  214 (340)
T 3gms_A          136 CTETLNLQRNDVLLVNACGSAIGHLFAQLSQIL-NFRLIAVTRNNKHTEELLRLGAAYVIDTSTAPLYETVMELTNGIGA  214 (340)
T ss_dssp             HHTTSCCCTTCEEEESSTTSHHHHHHHHHHHHH-TCEEEEEESSSTTHHHHHHHTCSEEEETTTSCHHHHHHHHTTTSCE
T ss_pred             HHHhcccCCCCEEEEeCCccHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHhCCCcEEEeCCcccHHHHHHHHhCCCCC
Confidence            3344566778999999987  466666666542 239999999998888887632110      00        112469


Q ss_pred             eEEEeCccccCCCCHHHHHHHHHHcccCCcEEEEEEe
Q 019861          233 DAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTY  269 (334)
Q Consensus       233 D~V~~~~vl~h~~d~~~~L~~i~r~LkpgG~lii~~~  269 (334)
                      |+|+....-     +  .+.+..+.|+++|+++..-.
T Consensus       215 Dvvid~~g~-----~--~~~~~~~~l~~~G~iv~~G~  244 (340)
T 3gms_A          215 DAAIDSIGG-----P--DGNELAFSLRPNGHFLTIGL  244 (340)
T ss_dssp             EEEEESSCH-----H--HHHHHHHTEEEEEEEEECCC
T ss_pred             cEEEECCCC-----h--hHHHHHHHhcCCCEEEEEee
Confidence            999865432     2  23445589999999888654

>1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1

Probab=91.57  E-value=0.7  Score=41.74  Aligned_cols=90  Identities=18%  Similarity=0.131  Sum_probs=60.4

Q ss_pred             cCCCCCCcEEEECCCc-CHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcC-------CCC--------C---CCCce
Q 019861          173 LKPVLGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQE-------SNF--------P---KDSID  233 (334)
Q Consensus       173 l~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~-------~~~--------~---~~~fD  233 (334)
                      .+..++.+||-+|+|. |.++..+++.. ..+|+++|.++..++.+++.-...       ..+        .   .+.+|
T Consensus       164 ~~~~~g~~VlV~GaG~vG~~a~qla~~~-Ga~Vi~~~~~~~~~~~~~~lGa~~~~~~~~~~~~~~~i~~~~~~~~g~g~D  242 (352)
T 1e3j_A          164 AGVQLGTTVLVIGAGPIGLVSVLAAKAY-GAFVVCTARSPRRLEVAKNCGADVTLVVDPAKEEESSIIERIRSAIGDLPN  242 (352)
T ss_dssp             HTCCTTCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHTTCSEEEECCTTTSCHHHHHHHHHHHSSSCCS
T ss_pred             cCCCCCCEEEEECCCHHHHHHHHHHHHc-CCEEEEEcCCHHHHHHHHHhCCCEEEcCcccccHHHHHHHHhccccCCCCC
Confidence            3556688999999875 66666666653 237999999999888887532110       110        0   13588


Q ss_pred             EEEeCccccCCCCHHHHHHHHHHcccCCcEEEEEEe
Q 019861          234 AVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTY  269 (334)
Q Consensus       234 ~V~~~~vl~h~~d~~~~L~~i~r~LkpgG~lii~~~  269 (334)
                      +|+-.-.     . ...++...+.|+++|+++....
T Consensus       243 ~vid~~g-----~-~~~~~~~~~~l~~~G~iv~~G~  272 (352)
T 1e3j_A          243 VTIDCSG-----N-EKCITIGINITRTGGTLMLVGM  272 (352)
T ss_dssp             EEEECSC-----C-HHHHHHHHHHSCTTCEEEECSC
T ss_pred             EEEECCC-----C-HHHHHHHHHHHhcCCEEEEEec
Confidence            8875432     2 2357888999999999887543

>2j3h_A NADP-dependent oxidoreductase P1; double bond reductase (AT5G16970), APO form; 2.5A {Arabidopsis thaliana} PDB: 2j3i_A* 2j3j_A* 2j3k_A*

Probab=91.51  E-value=0.42  Score=43.00  Aligned_cols=90  Identities=12%  Similarity=0.044  Sum_probs=60.7

Q ss_pred             cccCCCCCCcEEEECC--CcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCC--------CC-------CCCCce
Q 019861          171 GYLKPVLGGNIIDASC--GSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES--------NF-------PKDSID  233 (334)
Q Consensus       171 ~~l~~~~~~~vLDiGc--G~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~--------~~-------~~~~fD  233 (334)
                      +..+..++.+||-+|+  |.|..+..++... ..+|+++|.++..++.+++.+....        .+       ..+.+|
T Consensus       149 ~~~~~~~g~~vlI~Ga~g~iG~~~~~~a~~~-G~~V~~~~~~~~~~~~~~~~~g~~~~~d~~~~~~~~~~~~~~~~~~~d  227 (345)
T 2j3h_A          149 EVCSPKEGETVYVSAASGAVGQLVGQLAKMM-GCYVVGSAGSKEKVDLLKTKFGFDDAFNYKEESDLTAALKRCFPNGID  227 (345)
T ss_dssp             TTSCCCTTCEEEESSTTSHHHHHHHHHHHHT-TCEEEEEESSHHHHHHHHHTSCCSEEEETTSCSCSHHHHHHHCTTCEE
T ss_pred             HHhCCCCCCEEEEECCCcHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHcCCceEEecCCHHHHHHHHHHHhCCCCc
Confidence            3345567889999997  4566666666543 2499999999988888774322110        11       013589


Q ss_pred             EEEeCccccCCCCHHHHHHHHHHcccCCcEEEEEE
Q 019861          234 AVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTT  268 (334)
Q Consensus       234 ~V~~~~vl~h~~d~~~~L~~i~r~LkpgG~lii~~  268 (334)
                      +|+....     .  ..++...+.|++||++++..
T Consensus       228 ~vi~~~g-----~--~~~~~~~~~l~~~G~~v~~G  255 (345)
T 2j3h_A          228 IYFENVG-----G--KMLDAVLVNMNMHGRIAVCG  255 (345)
T ss_dssp             EEEESSC-----H--HHHHHHHTTEEEEEEEEECC
T ss_pred             EEEECCC-----H--HHHHHHHHHHhcCCEEEEEc
Confidence            8886643     1  36888999999999988754

>2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A*

Probab=91.39  E-value=0.74  Score=41.90  Aligned_cols=92  Identities=17%  Similarity=0.127  Sum_probs=61.2

Q ss_pred             cccCCCCCCcEEEECCCc-CHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcC--------CC-------CCCCCceE
Q 019861          171 GYLKPVLGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQE--------SN-------FPKDSIDA  234 (334)
Q Consensus       171 ~~l~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~--------~~-------~~~~~fD~  234 (334)
                      +..+..++.+||-+|+|. |.++..+++......|+++|.++..++.+++.-...        ..       ...+.+|+
T Consensus       184 ~~~~~~~g~~VlV~GaG~vG~~avqla~~~Ga~~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~v~~~~~~g~D~  263 (373)
T 2fzw_A          184 NTAKLEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEFGATECINPQDFSKPIQEVLIEMTDGGVDY  263 (373)
T ss_dssp             TTTCCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHHTCSEEECGGGCSSCHHHHHHHHTTSCBSE
T ss_pred             hhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCceEeccccccccHHHHHHHHhCCCCCE
Confidence            344556788999999865 666666666532237999999998888887532110        00       01136888


Q ss_pred             EEeCccccCCCCHHHHHHHHHHcccCC-cEEEEEE
Q 019861          235 VHAGAAIHCWSSPSTGVAEISRVLRPG-GVFVGTT  268 (334)
Q Consensus       235 V~~~~vl~h~~d~~~~L~~i~r~Lkpg-G~lii~~  268 (334)
                      |+-.-.     . ...++...+.|+++ |++++..
T Consensus       264 vid~~g-----~-~~~~~~~~~~l~~~~G~iv~~G  292 (373)
T 2fzw_A          264 SFECIG-----N-VKVMRAALEACHKGWGVSVVVG  292 (373)
T ss_dssp             EEECSC-----C-HHHHHHHHHTBCTTTCEEEECS
T ss_pred             EEECCC-----c-HHHHHHHHHhhccCCcEEEEEe
Confidence            875432     2 24578899999999 9988754

>1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A*

Probab=91.34  E-value=0.81  Score=41.71  Aligned_cols=93  Identities=15%  Similarity=0.087  Sum_probs=61.8

Q ss_pred             cccCCCCCCcEEEECCCc-CHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcC--------CCC-------CCCCceE
Q 019861          171 GYLKPVLGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQE--------SNF-------PKDSIDA  234 (334)
Q Consensus       171 ~~l~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~--------~~~-------~~~~fD~  234 (334)
                      +.....++.+||-+|+|. |.++..+++.....+|+++|.++..++.+++.-...        ..+       ..+.+|+
T Consensus       189 ~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~v~~~~~~g~Dv  268 (376)
T 1e3i_A          189 NTAKVTPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKALGATDCLNPRELDKPVQDVITELTAGGVDY  268 (376)
T ss_dssp             TTSCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHHTSCBSE
T ss_pred             HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCCcEEEccccccchHHHHHHHHhCCCccE
Confidence            344566788999999874 667777777642237999999998888887531110        000       0135888


Q ss_pred             EEeCccccCCCCHHHHHHHHHHcccCC-cEEEEEEe
Q 019861          235 VHAGAAIHCWSSPSTGVAEISRVLRPG-GVFVGTTY  269 (334)
Q Consensus       235 V~~~~vl~h~~d~~~~L~~i~r~Lkpg-G~lii~~~  269 (334)
                      |+-.-     .. ...++...+.|+++ |++++.-.
T Consensus       269 vid~~-----G~-~~~~~~~~~~l~~~~G~iv~~G~  298 (376)
T 1e3i_A          269 SLDCA-----GT-AQTLKAAVDCTVLGWGSCTVVGA  298 (376)
T ss_dssp             EEESS-----CC-HHHHHHHHHTBCTTTCEEEECCC
T ss_pred             EEECC-----CC-HHHHHHHHHHhhcCCCEEEEECC
Confidence            87543     22 24578899999999 99887543

>3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima}

Probab=91.26  E-value=0.96  Score=41.74  Aligned_cols=91  Identities=16%  Similarity=0.041  Sum_probs=60.3

Q ss_pred             CCCCCCcEEEECCCc-CHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcC------CC--------CCCCCceEEEeC
Q 019861          174 KPVLGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQE------SN--------FPKDSIDAVHAG  238 (334)
Q Consensus       174 ~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~------~~--------~~~~~fD~V~~~  238 (334)
                      ...++.+||=+|+|. |.++..+++......|+++|.++.-++.+++.-...      ..        .....+|+|+-.
T Consensus       210 ~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~i~~~t~g~g~D~vid~  289 (404)
T 3ip1_A          210 GIRPGDNVVILGGGPIGLAAVAILKHAGASKVILSEPSEVRRNLAKELGADHVIDPTKENFVEAVLDYTNGLGAKLFLEA  289 (404)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHHHHTCSEEECTTTSCHHHHHHHHTTTCCCSEEEEC
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCCCEEEcCCCCCHHHHHHHHhCCCCCCEEEEC
Confidence            456788999999865 666777776642238999999999988887642111      00        112368888754


Q ss_pred             ccccCCCCHHHHHHHHHHcc----cCCcEEEEEEe
Q 019861          239 AAIHCWSSPSTGVAEISRVL----RPGGVFVGTTY  269 (334)
Q Consensus       239 ~vl~h~~d~~~~L~~i~r~L----kpgG~lii~~~  269 (334)
                           ...+...+..+.+.|    +++|++++...
T Consensus       290 -----~g~~~~~~~~~~~~l~~~~~~~G~iv~~G~  319 (404)
T 3ip1_A          290 -----TGVPQLVWPQIEEVIWRARGINATVAIVAR  319 (404)
T ss_dssp             -----SSCHHHHHHHHHHHHHHCSCCCCEEEECSC
T ss_pred             -----CCCcHHHHHHHHHHHHhccCCCcEEEEeCC
Confidence                 345544555555566    99999888543

>3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A*

Probab=91.09  E-value=0.54  Score=42.00  Aligned_cols=92  Identities=15%  Similarity=0.111  Sum_probs=62.5

Q ss_pred             HcccCCCCCCcEEEECC--CcCHHHHHHHHc-CCCCeEEEEeCCHHHHHHHHHHHhcC------CC--------CCCCCc
Q 019861          170 KGYLKPVLGGNIIDASC--GSGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQQE------SN--------FPKDSI  232 (334)
Q Consensus       170 ~~~l~~~~~~~vLDiGc--G~G~~~~~l~~~-~~~~~v~giD~s~~~~~~a~~~~~~~------~~--------~~~~~f  232 (334)
                      .......++.+||-+|+  |.|..+..+++. |.  +|+++|.++..++.+++.-...      ..        .....+
T Consensus       133 ~~~~~~~~g~~VlV~Ga~g~iG~~~~~~a~~~Ga--~Vi~~~~~~~~~~~~~~~Ga~~~~~~~~~~~~~~~~~~~~~~g~  210 (325)
T 3jyn_A          133 RQTYQVKPGEIILFHAAAGGVGSLACQWAKALGA--KLIGTVSSPEKAAHAKALGAWETIDYSHEDVAKRVLELTDGKKC  210 (325)
T ss_dssp             HTTSCCCTTCEEEESSTTSHHHHHHHHHHHHHTC--EEEEEESSHHHHHHHHHHTCSEEEETTTSCHHHHHHHHTTTCCE
T ss_pred             HHhcCCCCCCEEEEEcCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHcCCCEEEeCCCccHHHHHHHHhCCCCc
Confidence            34445667899999993  346666666654 54  9999999999888887532110      00        122469


Q ss_pred             eEEEeCccccCCCCHHHHHHHHHHcccCCcEEEEEEec
Q 019861          233 DAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYI  270 (334)
Q Consensus       233 D~V~~~~vl~h~~d~~~~L~~i~r~LkpgG~lii~~~~  270 (334)
                      |+|+....-       ..+....+.|+++|++++....
T Consensus       211 Dvvid~~g~-------~~~~~~~~~l~~~G~iv~~g~~  241 (325)
T 3jyn_A          211 PVVYDGVGQ-------DTWLTSLDSVAPRGLVVSFGNA  241 (325)
T ss_dssp             EEEEESSCG-------GGHHHHHTTEEEEEEEEECCCT
T ss_pred             eEEEECCCh-------HHHHHHHHHhcCCCEEEEEecC
Confidence            999875442       2477888999999998886543

>1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A*

Probab=91.07  E-value=0.7  Score=42.10  Aligned_cols=92  Identities=15%  Similarity=0.107  Sum_probs=61.2

Q ss_pred             cccCCCCCCcEEEECCCc-CHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcC--------CCC-------CCCCceE
Q 019861          171 GYLKPVLGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQE--------SNF-------PKDSIDA  234 (334)
Q Consensus       171 ~~l~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~--------~~~-------~~~~fD~  234 (334)
                      +..+..++.+||-+|+|. |.++..+++.....+|+++|.++..++.+++.-...        ..+       ..+.+|+
T Consensus       185 ~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~i~~~t~gg~Dv  264 (373)
T 1p0f_A          185 NTAKVTPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIELGATECLNPKDYDKPIYEVICEKTNGGVDY  264 (373)
T ss_dssp             TTTCCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHTTSCBSE
T ss_pred             hccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHcCCcEEEecccccchHHHHHHHHhCCCCCE
Confidence            344556788999999875 666667766532237999999998888887531110        000       1136888


Q ss_pred             EEeCccccCCCCHHHHHHHHHHcccCC-cEEEEEE
Q 019861          235 VHAGAAIHCWSSPSTGVAEISRVLRPG-GVFVGTT  268 (334)
Q Consensus       235 V~~~~vl~h~~d~~~~L~~i~r~Lkpg-G~lii~~  268 (334)
                      |+-.-     .. ...++...+.|+++ |++++..
T Consensus       265 vid~~-----g~-~~~~~~~~~~l~~~~G~iv~~G  293 (373)
T 1p0f_A          265 AVECA-----GR-IETMMNALQSTYCGSGVTVVLG  293 (373)
T ss_dssp             EEECS-----CC-HHHHHHHHHTBCTTTCEEEECC
T ss_pred             EEECC-----CC-HHHHHHHHHHHhcCCCEEEEEc
Confidence            87543     22 24578899999999 9988754

>2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ...

Probab=91.02  E-value=0.87  Score=41.47  Aligned_cols=92  Identities=14%  Similarity=0.096  Sum_probs=61.1

Q ss_pred             cccCCCCCCcEEEECCCc-CHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcC--------CC-------CCCCCceE
Q 019861          171 GYLKPVLGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQE--------SN-------FPKDSIDA  234 (334)
Q Consensus       171 ~~l~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~--------~~-------~~~~~fD~  234 (334)
                      +.....++.+||-+|+|. |.++..+++.....+|+++|.++..++.+++.-...        ..       ...+.+|+
T Consensus       185 ~~~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~~~~~~~~g~D~  264 (374)
T 2jhf_A          185 KVAKVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVGATECVNPQDYKKPIQEVLTEMSNGGVDF  264 (374)
T ss_dssp             TTTCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHTTSCBSE
T ss_pred             hccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCCceEecccccchhHHHHHHHHhCCCCcE
Confidence            344556788999999875 666777776642237999999998888886531110        00       01236888


Q ss_pred             EEeCccccCCCCHHHHHHHHHHcccCC-cEEEEEE
Q 019861          235 VHAGAAIHCWSSPSTGVAEISRVLRPG-GVFVGTT  268 (334)
Q Consensus       235 V~~~~vl~h~~d~~~~L~~i~r~Lkpg-G~lii~~  268 (334)
                      |+-.-     .. ...++...+.|+++ |++++.-
T Consensus       265 vid~~-----g~-~~~~~~~~~~l~~~~G~iv~~G  293 (374)
T 2jhf_A          265 SFEVI-----GR-LDTMVTALSCCQEAYGVSVIVG  293 (374)
T ss_dssp             EEECS-----CC-HHHHHHHHHHBCTTTCEEEECS
T ss_pred             EEECC-----CC-HHHHHHHHHHhhcCCcEEEEec
Confidence            87543     22 24578889999999 9988754

>3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A*

Probab=90.82  E-value=0.61  Score=41.97  Aligned_cols=90  Identities=13%  Similarity=0.095  Sum_probs=61.4

Q ss_pred             CCCCCCcEEEECCCc-CHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcC-----CCC--------CCCCceEEEeCc
Q 019861          174 KPVLGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQE-----SNF--------PKDSIDAVHAGA  239 (334)
Q Consensus       174 ~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~-----~~~--------~~~~fD~V~~~~  239 (334)
                      ...++.+||-+|+|. |.++..+++.....+|+++|.++..++.+++.-...     ..+        ....+|+|+-.-
T Consensus       168 ~~~~g~~vlv~GaG~vG~~a~qla~~~g~~~Vi~~~~~~~~~~~~~~lGa~~~i~~~~~~~~~v~~~t~g~g~d~v~d~~  247 (345)
T 3jv7_A          168 LLGPGSTAVVIGVGGLGHVGIQILRAVSAARVIAVDLDDDRLALAREVGADAAVKSGAGAADAIRELTGGQGATAVFDFV  247 (345)
T ss_dssp             GCCTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHHHTTCSEEEECSTTHHHHHHHHHGGGCEEEEEESS
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCCCEEEcCCCcHHHHHHHHhCCCCCeEEEECC
Confidence            445688999999875 677777776532359999999999988887631110     000        112688887543


Q ss_pred             cccCCCCHHHHHHHHHHcccCCcEEEEEEe
Q 019861          240 AIHCWSSPSTGVAEISRVLRPGGVFVGTTY  269 (334)
Q Consensus       240 vl~h~~d~~~~L~~i~r~LkpgG~lii~~~  269 (334)
                           ..+ ..++...+.|+++|++++...
T Consensus       248 -----G~~-~~~~~~~~~l~~~G~iv~~G~  271 (345)
T 3jv7_A          248 -----GAQ-STIDTAQQVVAVDGHISVVGI  271 (345)
T ss_dssp             -----CCH-HHHHHHHHHEEEEEEEEECSC
T ss_pred             -----CCH-HHHHHHHHHHhcCCEEEEECC
Confidence                 222 368889999999999887643

>3tos_A CALS11; methyltransferase, calicheamicin, structural genomic protein structure initiative, PSI, natPro; HET: MSE SAH GLU; 1.55A {Micromonospora echinospora} PDB: 4gf5_A*

Probab=90.81  E-value=1.4  Score=38.12  Aligned_cols=40  Identities=10%  Similarity=0.087  Sum_probs=29.4

Q ss_pred             CCCceEEEeCccccCCCCHHHHHHHHHHcccCCcEEEEEEec
Q 019861          229 KDSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYI  270 (334)
Q Consensus       229 ~~~fD~V~~~~vl~h~~d~~~~L~~i~r~LkpgG~lii~~~~  270 (334)
                      ..++|+|+...-.  -......++.+...|+|||++++-+.+
T Consensus       180 ~~~~dlv~ID~D~--Y~~t~~~le~~~p~l~~GGvIv~DD~~  219 (257)
T 3tos_A          180 QTVIALAYFDLDL--YEPTKAVLEAIRPYLTKGSIVAFDELD  219 (257)
T ss_dssp             TCCEEEEEECCCC--HHHHHHHHHHHGGGEEEEEEEEESSTT
T ss_pred             CCceEEEEEcCcc--cchHHHHHHHHHHHhCCCcEEEEcCCC
Confidence            4568998887632  123346789999999999999996654

>2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural genomics, NPPSFA, natio project on protein structural and functional analyses; 2.30A {Thermus thermophilus}

Probab=90.81  E-value=0.96  Score=40.64  Aligned_cols=88  Identities=16%  Similarity=0.105  Sum_probs=60.3

Q ss_pred             cCCCCCCcEEEECC--CcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCC-------C--------CCCCCceEE
Q 019861          173 LKPVLGGNIIDASC--GSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES-------N--------FPKDSIDAV  235 (334)
Q Consensus       173 l~~~~~~~vLDiGc--G~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~-------~--------~~~~~fD~V  235 (334)
                      .+..++.+||-+|+  |.|..+..+++.. ..+++++|.++..++.+++. ....       .        .....+|+|
T Consensus       162 ~~~~~g~~vlV~Gasg~iG~~~~~~a~~~-G~~Vi~~~~~~~~~~~~~~~-ga~~~~d~~~~~~~~~~~~~~~~~~~d~v  239 (343)
T 2eih_A          162 LGVRPGDDVLVMAAGSGVSVAAIQIAKLF-GARVIATAGSEDKLRRAKAL-GADETVNYTHPDWPKEVRRLTGGKGADKV  239 (343)
T ss_dssp             SCCCTTCEEEECSTTSTTHHHHHHHHHHT-TCEEEEEESSHHHHHHHHHH-TCSEEEETTSTTHHHHHHHHTTTTCEEEE
T ss_pred             cCCCCCCEEEEECCCchHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHhc-CCCEEEcCCcccHHHHHHHHhCCCCceEE
Confidence            35566889999998  4566666666543 24999999999888888653 2110       0        112369999


Q ss_pred             EeCccccCCCCHHHHHHHHHHcccCCcEEEEEEe
Q 019861          236 HAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTY  269 (334)
Q Consensus       236 ~~~~vl~h~~d~~~~L~~i~r~LkpgG~lii~~~  269 (334)
                      +.... .      ..++.+.+.|+++|+++....
T Consensus       240 i~~~g-~------~~~~~~~~~l~~~G~~v~~g~  266 (343)
T 2eih_A          240 VDHTG-A------LYFEGVIKATANGGRIAIAGA  266 (343)
T ss_dssp             EESSC-S------SSHHHHHHHEEEEEEEEESSC
T ss_pred             EECCC-H------HHHHHHHHhhccCCEEEEEec
Confidence            87654 2      237788899999999887543

>3jyw_9 60S ribosomal protein L43; eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus}

Probab=90.75  E-value=0.17  Score=34.54  Aligned_cols=32  Identities=34%  Similarity=0.620  Sum_probs=23.1

Q ss_pred             CceeCCCCCCCccccCCCCcccccccCCccccccccccccc
Q 019861           70 NVLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSG  110 (334)
Q Consensus        70 ~~l~CPiC~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~~~  110 (334)
                      ....||.|+..-....         ..++|.|..|+..+..
T Consensus        25 ~ky~C~fCgk~~vkR~---------a~GIW~C~~C~~~~AG   56 (72)
T 3jyw_9           25 ARYDCSFCGKKTVKRG---------AAGIWTCSCCKKTVAG   56 (72)
T ss_dssp             SCBCCSSCCSSCBSBC---------SSSCBCCSSSCCCCCC
T ss_pred             cCccCCCCCCceeEec---------CCCeEECCCCCCEEeC
Confidence            4588999998643222         3479999999987643

>3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A*

Probab=90.52  E-value=1.2  Score=44.18  Aligned_cols=70  Identities=21%  Similarity=0.265  Sum_probs=41.3

Q ss_pred             CCceEEEeCccccCCCCH----HHHHHHHHHcccCCcEEEEEEeccCCCCCchHHHHHHHHHhhhhcCccCCCCHHHHHH
Q 019861          230 DSIDAVHAGAAIHCWSSP----STGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIED  305 (334)
Q Consensus       230 ~~fD~V~~~~vl~h~~d~----~~~L~~i~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~l~~  305 (334)
                      ..+|+++....--. .||    ..++..+.++++|||.+..                              +-....+++
T Consensus       170 ~~~da~flD~f~p~-~np~~w~~~~~~~l~~~~~~g~~~~t------------------------------~~~~~~vr~  218 (689)
T 3pvc_A          170 NQVDAWFLDGFAPA-KNPDMWNEQLFNAMARMTRPGGTFST------------------------------FTAAGFVRR  218 (689)
T ss_dssp             TCEEEEEECSSCC---CCTTCSHHHHHHHHHHEEEEEEEEE------------------------------SCCCHHHHH
T ss_pred             CceeEEEECCCCCC-CChhhhhHHHHHHHHHHhCCCCEEEe------------------------------ccCcHHHHH
Confidence            45777776442111 123    4677888888888876543                              112347889


Q ss_pred             HHHhCCCcEEEEeec-CcEEEEEEEc
Q 019861          306 LCRACGLVDFKCTRN-RGFVMFTATK  330 (334)
Q Consensus       306 ll~~~Gf~~v~~~~~-g~~~~~~a~K  330 (334)
                      .|.++||.+.+.... ...-+..+.+
T Consensus       219 ~l~~aGf~~~~~~~~~~k~~~~~~~~  244 (689)
T 3pvc_A          219 GLQQAGFNVTKVKGFGQKREMLTGTL  244 (689)
T ss_dssp             HHHHTTCEEEEEECSSSSCEEEEEEC
T ss_pred             HHHhCCeEEEeccCCCcccccccccc
Confidence            999999987764432 2334444443

>4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.99A {Rhizobium etli}

Probab=90.48  E-value=1  Score=40.87  Aligned_cols=84  Identities=15%  Similarity=0.126  Sum_probs=59.3

Q ss_pred             CCCcEEEEC-CC-cCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCC-------------CCCCCCceEEEeCccc
Q 019861          177 LGGNIIDAS-CG-SGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES-------------NFPKDSIDAVHAGAAI  241 (334)
Q Consensus       177 ~~~~vLDiG-cG-~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~-------------~~~~~~fD~V~~~~vl  241 (334)
                      ++.+||-+| +| .|.++..+++.....+|+++|.++..++.+++. ..+.             ....+.+|+|+-.-. 
T Consensus       171 ~g~~VlV~Ga~G~vG~~a~qlak~~~g~~Vi~~~~~~~~~~~~~~l-Gad~vi~~~~~~~~~v~~~~~~g~Dvvid~~g-  248 (363)
T 4dvj_A          171 AAPAILIVGGAGGVGSIAVQIARQRTDLTVIATASRPETQEWVKSL-GAHHVIDHSKPLAAEVAALGLGAPAFVFSTTH-  248 (363)
T ss_dssp             SEEEEEEESTTSHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHHT-TCSEEECTTSCHHHHHHTTCSCCEEEEEECSC-
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHHHHc-CCCEEEeCCCCHHHHHHHhcCCCceEEEECCC-
Confidence            578999998 44 377888888751135999999999888888753 2110             122346888876432 


Q ss_pred             cCCCCHHHHHHHHHHcccCCcEEEEE
Q 019861          242 HCWSSPSTGVAEISRVLRPGGVFVGT  267 (334)
Q Consensus       242 ~h~~d~~~~L~~i~r~LkpgG~lii~  267 (334)
                           -...+..+.+.|+++|++++.
T Consensus       249 -----~~~~~~~~~~~l~~~G~iv~~  269 (363)
T 4dvj_A          249 -----TDKHAAEIADLIAPQGRFCLI  269 (363)
T ss_dssp             -----HHHHHHHHHHHSCTTCEEEEC
T ss_pred             -----chhhHHHHHHHhcCCCEEEEE
Confidence                 234678899999999999876

>3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A*

Probab=90.37  E-value=0.67  Score=41.49  Aligned_cols=90  Identities=19%  Similarity=0.182  Sum_probs=61.2

Q ss_pred             cccCCCCCCcEEEECC--CcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCC-------C--------CCCCCce
Q 019861          171 GYLKPVLGGNIIDASC--GSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES-------N--------FPKDSID  233 (334)
Q Consensus       171 ~~l~~~~~~~vLDiGc--G~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~-------~--------~~~~~fD  233 (334)
                      +.....++.+||-+|+  |.|..+..+++.. ..+|+++|.++..++.+++. ....       .        .....+|
T Consensus       142 ~~~~~~~g~~vlV~Ga~g~iG~~~~~~a~~~-Ga~Vi~~~~~~~~~~~~~~~-ga~~~~~~~~~~~~~~~~~~~~~~g~D  219 (334)
T 3qwb_A          142 EAYHVKKGDYVLLFAAAGGVGLILNQLLKMK-GAHTIAVASTDEKLKIAKEY-GAEYLINASKEDILRQVLKFTNGKGVD  219 (334)
T ss_dssp             TTSCCCTTCEEEESSTTBHHHHHHHHHHHHT-TCEEEEEESSHHHHHHHHHT-TCSEEEETTTSCHHHHHHHHTTTSCEE
T ss_pred             HhccCCCCCEEEEECCCCHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHc-CCcEEEeCCCchHHHHHHHHhCCCCce
Confidence            3345667899999994  3466666666553 34999999999888877653 2110       0        1134699


Q ss_pred             EEEeCccccCCCCHHHHHHHHHHcccCCcEEEEEEe
Q 019861          234 AVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTY  269 (334)
Q Consensus       234 ~V~~~~vl~h~~d~~~~L~~i~r~LkpgG~lii~~~  269 (334)
                      +|+....-       ..++...+.|+++|+++..-.
T Consensus       220 ~vid~~g~-------~~~~~~~~~l~~~G~iv~~G~  248 (334)
T 3qwb_A          220 ASFDSVGK-------DTFEISLAALKRKGVFVSFGN  248 (334)
T ss_dssp             EEEECCGG-------GGHHHHHHHEEEEEEEEECCC
T ss_pred             EEEECCCh-------HHHHHHHHHhccCCEEEEEcC
Confidence            99876542       347788899999999888543

>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1

Probab=90.17  E-value=0.1  Score=37.47  Aligned_cols=33  Identities=24%  Similarity=0.442  Sum_probs=22.7

Q ss_pred             cCCCceeCCCCCCCccccCCCCcccccccCCccccccccccccc
Q 019861           67 TSKNVLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSG  110 (334)
Q Consensus        67 ~~~~~l~CPiC~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~~~  110 (334)
                      +..+...||.|+.++.+.+           ++..|..|+.-|..
T Consensus        28 ~~~M~~~CP~Cq~eL~~~g-----------~~~hC~~C~~~f~~   60 (101)
T 2jne_A           28 GSHMELHCPQCQHVLDQDN-----------GHARCRSCGEFIEM   60 (101)
T ss_dssp             ---CCCBCSSSCSBEEEET-----------TEEEETTTCCEEEE
T ss_pred             cccccccCccCCCcceecC-----------CEEECccccchhhc
Confidence            3445689999999998865           46667777765543

>3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana}

Probab=89.86  E-value=0.84  Score=41.67  Aligned_cols=94  Identities=17%  Similarity=0.114  Sum_probs=63.0

Q ss_pred             HcccCCCCCCcEEEECCCc-CHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcC--------CC-------CCCCCce
Q 019861          170 KGYLKPVLGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQE--------SN-------FPKDSID  233 (334)
Q Consensus       170 ~~~l~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~--------~~-------~~~~~fD  233 (334)
                      .+.....++.+||-+|+|. |.++..+++.....+|+++|.++..++.+++.-...        ..       ..++.+|
T Consensus       186 ~~~~~~~~g~~VlV~GaG~vG~~a~q~a~~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~i~~~~~gg~D  265 (378)
T 3uko_A          186 WNTAKVEPGSNVAIFGLGTVGLAVAEGAKTAGASRIIGIDIDSKKYETAKKFGVNEFVNPKDHDKPIQEVIVDLTDGGVD  265 (378)
T ss_dssp             HTTTCCCTTCCEEEECCSHHHHHHHHHHHHHTCSCEEEECSCTTHHHHHHTTTCCEEECGGGCSSCHHHHHHHHTTSCBS
T ss_pred             HhhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCcEEEccccCchhHHHHHHHhcCCCCC
Confidence            3445566789999999874 667777766532237999999999888887531110        00       1123688


Q ss_pred             EEEeCccccCCCCHHHHHHHHHHcccCC-cEEEEEEe
Q 019861          234 AVHAGAAIHCWSSPSTGVAEISRVLRPG-GVFVGTTY  269 (334)
Q Consensus       234 ~V~~~~vl~h~~d~~~~L~~i~r~Lkpg-G~lii~~~  269 (334)
                      +|+-.-     ..+ ..++...+.|++| |++++.-.
T Consensus       266 ~vid~~-----g~~-~~~~~~~~~l~~g~G~iv~~G~  296 (378)
T 3uko_A          266 YSFECI-----GNV-SVMRAALECCHKGWGTSVIVGV  296 (378)
T ss_dssp             EEEECS-----CCH-HHHHHHHHTBCTTTCEEEECSC
T ss_pred             EEEECC-----CCH-HHHHHHHHHhhccCCEEEEEcc
Confidence            888543     233 4578899999997 99887544

>1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2 c.2.1.1

Probab=89.47  E-value=0.81  Score=41.85  Aligned_cols=89  Identities=22%  Similarity=0.270  Sum_probs=59.9

Q ss_pred             cC-CCCCCcEEEECCCc-CHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCC----C--------------CCCCCc
Q 019861          173 LK-PVLGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES----N--------------FPKDSI  232 (334)
Q Consensus       173 l~-~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~----~--------------~~~~~f  232 (334)
                      .+ ..++.+||-+|+|. |.++..+++.....+|+++|.++..++.+++. ....    .              .....+
T Consensus       190 ~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~~~~l-Ga~~vi~~~~~~~~~~~~~v~~~~~g~g~  268 (380)
T 1vj0_A          190 YPESFAGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEEI-GADLTLNRRETSVEERRKAIMDITHGRGA  268 (380)
T ss_dssp             CSSCCBTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHHHT-TCSEEEETTTSCHHHHHHHHHHHTTTSCE
T ss_pred             cCCCCCCCEEEEECcCHHHHHHHHHHHHcCCceEEEEcCCHHHHHHHHHc-CCcEEEeccccCcchHHHHHHHHhCCCCC
Confidence            45 56788999999664 66666666653114999999999888888742 1110    0              112368


Q ss_pred             eEEEeCccccCCCCHHHHHHHHHHcccCCcEEEEEE
Q 019861          233 DAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTT  268 (334)
Q Consensus       233 D~V~~~~vl~h~~d~~~~L~~i~r~LkpgG~lii~~  268 (334)
                      |+|+-.-.     .+ ..++...+.|+++|+++..-
T Consensus       269 Dvvid~~g-----~~-~~~~~~~~~l~~~G~iv~~G  298 (380)
T 1vj0_A          269 DFILEATG-----DS-RALLEGSELLRRGGFYSVAG  298 (380)
T ss_dssp             EEEEECSS-----CT-THHHHHHHHEEEEEEEEECC
T ss_pred             cEEEECCC-----CH-HHHHHHHHHHhcCCEEEEEe
Confidence            99886532     11 24778889999999988754

>1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase, quinon reduction, structural genomics, structural genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1

Probab=89.31  E-value=0.9  Score=41.09  Aligned_cols=89  Identities=17%  Similarity=0.099  Sum_probs=58.7

Q ss_pred             ccCCCCCCcEEEECC--CcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcC------CC--------CCCCCceEE
Q 019861          172 YLKPVLGGNIIDASC--GSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQE------SN--------FPKDSIDAV  235 (334)
Q Consensus       172 ~l~~~~~~~vLDiGc--G~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~------~~--------~~~~~fD~V  235 (334)
                      ..+..++.+||-.|+  |.|..+..++... ..+|+++|.++..++.+++.-...      ..        .....+|+|
T Consensus       165 ~~~~~~g~~vlV~GasggiG~~~~~~a~~~-Ga~Vi~~~~~~~~~~~~~~~ga~~~~d~~~~~~~~~~~~~~~~~~~D~v  243 (351)
T 1yb5_A          165 SACVKAGESVLVHGASGGVGLAACQIARAY-GLKILGTAGTEEGQKIVLQNGAHEVFNHREVNYIDKIKKYVGEKGIDII  243 (351)
T ss_dssp             TSCCCTTCEEEEETCSSHHHHHHHHHHHHT-TCEEEEEESSHHHHHHHHHTTCSEEEETTSTTHHHHHHHHHCTTCEEEE
T ss_pred             hhCCCCcCEEEEECCCChHHHHHHHHHHHC-CCEEEEEeCChhHHHHHHHcCCCEEEeCCCchHHHHHHHHcCCCCcEEE
Confidence            445567889999997  3455555555542 248999999998887765421100      00        012368999


Q ss_pred             EeCccccCCCCHHHHHHHHHHcccCCcEEEEEE
Q 019861          236 HAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTT  268 (334)
Q Consensus       236 ~~~~vl~h~~d~~~~L~~i~r~LkpgG~lii~~  268 (334)
                      +....-       ..+....+.|+++|++++..
T Consensus       244 i~~~G~-------~~~~~~~~~l~~~G~iv~~g  269 (351)
T 1yb5_A          244 IEMLAN-------VNLSKDLSLLSHGGRVIVVG  269 (351)
T ss_dssp             EESCHH-------HHHHHHHHHEEEEEEEEECC
T ss_pred             EECCCh-------HHHHHHHHhccCCCEEEEEe
Confidence            876542       35778889999999988754

>1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A

Probab=89.28  E-value=1.3  Score=39.81  Aligned_cols=87  Identities=23%  Similarity=0.186  Sum_probs=58.9

Q ss_pred             CCCCCCcEEEECCCc-CHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCC--CCCC-----------CCceEEEeCc
Q 019861          174 KPVLGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES--NFPK-----------DSIDAVHAGA  239 (334)
Q Consensus       174 ~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~--~~~~-----------~~fD~V~~~~  239 (334)
                      ...++.+||-+|+|. |..+..+++.. ..+|+++|.++..++.+++. ....  ...+           +.+|+|+...
T Consensus       161 ~~~~g~~VlV~GaG~vG~~~~~~a~~~-Ga~Vi~~~~~~~~~~~~~~l-Ga~~~~d~~~~~~~~~~~~~~~~~d~vid~~  238 (339)
T 1rjw_A          161 GAKPGEWVAIYGIGGLGHVAVQYAKAM-GLNVVAVDIGDEKLELAKEL-GADLVVNPLKEDAAKFMKEKVGGVHAAVVTA  238 (339)
T ss_dssp             TCCTTCEEEEECCSTTHHHHHHHHHHT-TCEEEEECSCHHHHHHHHHT-TCSEEECTTTSCHHHHHHHHHSSEEEEEESS
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHC-CCCEEecCCCccHHHHHHHHhCCCCEEEECC
Confidence            455688999999864 66666666553 24999999999988887652 2111  1110           3588887654


Q ss_pred             cccCCCCHHHHHHHHHHcccCCcEEEEEE
Q 019861          240 AIHCWSSPSTGVAEISRVLRPGGVFVGTT  268 (334)
Q Consensus       240 vl~h~~d~~~~L~~i~r~LkpgG~lii~~  268 (334)
                      .     . ...++...+.|+++|+++...
T Consensus       239 g-----~-~~~~~~~~~~l~~~G~~v~~g  261 (339)
T 1rjw_A          239 V-----S-KPAFQSAYNSIRRGGACVLVG  261 (339)
T ss_dssp             C-----C-HHHHHHHHHHEEEEEEEEECC
T ss_pred             C-----C-HHHHHHHHHHhhcCCEEEEec
Confidence            2     2 245788899999999988753

>4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus}

Probab=89.22  E-value=0.96  Score=40.70  Aligned_cols=90  Identities=13%  Similarity=0.019  Sum_probs=60.8

Q ss_pred             cccCCCCCCcEEEECC--CcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcC-----CC--------CCCCCceEE
Q 019861          171 GYLKPVLGGNIIDASC--GSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQE-----SN--------FPKDSIDAV  235 (334)
Q Consensus       171 ~~l~~~~~~~vLDiGc--G~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~-----~~--------~~~~~fD~V  235 (334)
                      +.....++.+||-+|+  |.|..+..+++.. ..+|++++.++..++.+++.-...     ..        .....+|+|
T Consensus       153 ~~~~~~~g~~VlV~Gasg~iG~~~~~~a~~~-Ga~Vi~~~~~~~~~~~~~~~ga~~v~~~~~~~~~~v~~~~~~~g~Dvv  231 (342)
T 4eye_A          153 RRGQLRAGETVLVLGAAGGIGTAAIQIAKGM-GAKVIAVVNRTAATEFVKSVGADIVLPLEEGWAKAVREATGGAGVDMV  231 (342)
T ss_dssp             TTSCCCTTCEEEESSTTSHHHHHHHHHHHHT-TCEEEEEESSGGGHHHHHHHTCSEEEESSTTHHHHHHHHTTTSCEEEE
T ss_pred             HhcCCCCCCEEEEECCCCHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHhcCCcEEecCchhHHHHHHHHhCCCCceEE
Confidence            4455667899999997  3466666666653 349999999998888877642110     00        112369999


Q ss_pred             EeCccccCCCCHHHHHHHHHHcccCCcEEEEEE
Q 019861          236 HAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTT  268 (334)
Q Consensus       236 ~~~~vl~h~~d~~~~L~~i~r~LkpgG~lii~~  268 (334)
                      +-...-.       .+....+.|+++|++++..
T Consensus       232 id~~g~~-------~~~~~~~~l~~~G~iv~~G  257 (342)
T 4eye_A          232 VDPIGGP-------AFDDAVRTLASEGRLLVVG  257 (342)
T ss_dssp             EESCC---------CHHHHHHTEEEEEEEEEC-
T ss_pred             EECCchh-------HHHHHHHhhcCCCEEEEEE
Confidence            8764422       4778889999999988754

>1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=89.22  E-value=0.83  Score=40.69  Aligned_cols=88  Identities=11%  Similarity=0.069  Sum_probs=59.3

Q ss_pred             ccCCCCCCcEEEECC--CcCHHHHHHHH-cCCCCeEEEEeCCHHHHHHHHHHHhcCC-------C--------CCCCCce
Q 019861          172 YLKPVLGGNIIDASC--GSGLFSRIFAK-SGLFSLVVALDYSENMLKQCYEFVQQES-------N--------FPKDSID  233 (334)
Q Consensus       172 ~l~~~~~~~vLDiGc--G~G~~~~~l~~-~~~~~~v~giD~s~~~~~~a~~~~~~~~-------~--------~~~~~fD  233 (334)
                      ..+..++.+||-.|+  |.|.....++. .|.  +|+++|.++..++.+++. ....       .        .....+|
T Consensus       135 ~~~~~~g~~vlV~Ga~ggiG~~~~~~a~~~G~--~V~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~D  211 (327)
T 1qor_A          135 TYEIKPDEQFLFHAAAGGVGLIACQWAKALGA--KLIGTVGTAQKAQSALKA-GAWQVINYREEDLVERLKEITGGKKVR  211 (327)
T ss_dssp             TSCCCTTCEEEESSTTBHHHHHHHHHHHHHTC--EEEEEESSHHHHHHHHHH-TCSEEEETTTSCHHHHHHHHTTTCCEE
T ss_pred             hhCCCCCCEEEEECCCCHHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHHc-CCCEEEECCCccHHHHHHHHhCCCCce
Confidence            445567889999994  44555555544 454  999999999888877753 2110       0        1123689


Q ss_pred             EEEeCccccCCCCHHHHHHHHHHcccCCcEEEEEEe
Q 019861          234 AVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTY  269 (334)
Q Consensus       234 ~V~~~~vl~h~~d~~~~L~~i~r~LkpgG~lii~~~  269 (334)
                      +|+....       ...++.+.+.|+++|+++....
T Consensus       212 ~vi~~~g-------~~~~~~~~~~l~~~G~iv~~g~  240 (327)
T 1qor_A          212 VVYDSVG-------RDTWERSLDCLQRRGLMVSFGN  240 (327)
T ss_dssp             EEEECSC-------GGGHHHHHHTEEEEEEEEECCC
T ss_pred             EEEECCc-------hHHHHHHHHHhcCCCEEEEEec
Confidence            9987654       2347888999999999887543

>2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae}

Probab=89.13  E-value=0.77  Score=41.38  Aligned_cols=88  Identities=18%  Similarity=0.172  Sum_probs=58.5

Q ss_pred             CCCCCCcEEEECC--CcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCC--CCC-------------CCCceEEE
Q 019861          174 KPVLGGNIIDASC--GSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES--NFP-------------KDSIDAVH  236 (334)
Q Consensus       174 ~~~~~~~vLDiGc--G~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~--~~~-------------~~~fD~V~  236 (334)
                      ...++.+||-+|+  |.|..+..++... ..+|+++|.++..++.+++. ....  ...             ++.+|+|+
T Consensus       166 ~~~~g~~vlV~Ga~ggiG~~~~~~a~~~-Ga~V~~~~~~~~~~~~~~~~-g~~~~~d~~~~~~~~~~~~~~~~~~~D~vi  243 (347)
T 2hcy_A          166 NLMAGHWVAISGAAGGLGSLAVQYAKAM-GYRVLGIDGGEGKEELFRSI-GGEVFIDFTKEKDIVGAVLKATDGGAHGVI  243 (347)
T ss_dssp             TCCTTCEEEEETTTSHHHHHHHHHHHHT-TCEEEEEECSTTHHHHHHHT-TCCEEEETTTCSCHHHHHHHHHTSCEEEEE
T ss_pred             CCCCCCEEEEECCCchHHHHHHHHHHHC-CCcEEEEcCCHHHHHHHHHc-CCceEEecCccHhHHHHHHHHhCCCCCEEE
Confidence            4566889999998  3566665555542 23999999998877777652 1110  000             12588888


Q ss_pred             eCccccCCCCHHHHHHHHHHcccCCcEEEEEEe
Q 019861          237 AGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTY  269 (334)
Q Consensus       237 ~~~vl~h~~d~~~~L~~i~r~LkpgG~lii~~~  269 (334)
                      ....     . ...++.+.+.|+++|+++....
T Consensus       244 ~~~g-----~-~~~~~~~~~~l~~~G~iv~~g~  270 (347)
T 2hcy_A          244 NVSV-----S-EAAIEASTRYVRANGTTVLVGM  270 (347)
T ss_dssp             ECSS-----C-HHHHHHHTTSEEEEEEEEECCC
T ss_pred             ECCC-----c-HHHHHHHHHHHhcCCEEEEEeC
Confidence            6643     1 2468889999999999887543

>3fbg_A Putative arginate lyase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.60A {Staphylococcus haemolyticus}

Probab=89.04  E-value=2  Score=38.57  Aligned_cols=84  Identities=12%  Similarity=0.114  Sum_probs=56.9

Q ss_pred             CCCcEEEEC-CC-cCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcC-----CC-------CCCCCceEEEeCcccc
Q 019861          177 LGGNIIDAS-CG-SGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQE-----SN-------FPKDSIDAVHAGAAIH  242 (334)
Q Consensus       177 ~~~~vLDiG-cG-~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~-----~~-------~~~~~fD~V~~~~vl~  242 (334)
                      ++.+||-+| +| .|.++..+++.. ..+|+++|.++..++.+++.-...     ..       ...+.+|+|+-...  
T Consensus       150 ~g~~VlV~gg~G~vG~~a~qla~~~-Ga~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~~~~~g~Dvv~d~~g--  226 (346)
T 3fbg_A          150 EGKTLLIINGAGGVGSIATQIAKAY-GLRVITTASRNETIEWTKKMGADIVLNHKESLLNQFKTQGIELVDYVFCTFN--  226 (346)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHT-TCEEEEECCSHHHHHHHHHHTCSEEECTTSCHHHHHHHHTCCCEEEEEESSC--
T ss_pred             CCCEEEEEcCCCHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHhcCCcEEEECCccHHHHHHHhCCCCccEEEECCC--
Confidence            688999994 44 366666666653 349999999999888887632110     00       11246898886432  


Q ss_pred             CCCCHHHHHHHHHHcccCCcEEEEE
Q 019861          243 CWSSPSTGVAEISRVLRPGGVFVGT  267 (334)
Q Consensus       243 h~~d~~~~L~~i~r~LkpgG~lii~  267 (334)
                          -...+..+.+.|+++|+++..
T Consensus       227 ----~~~~~~~~~~~l~~~G~iv~~  247 (346)
T 3fbg_A          227 ----TDMYYDDMIQLVKPRGHIATI  247 (346)
T ss_dssp             ----HHHHHHHHHHHEEEEEEEEES
T ss_pred             ----chHHHHHHHHHhccCCEEEEE
Confidence                234578889999999998764

>2j8z_A Quinone oxidoreductase; medium-chain dehydrogenase- reductases, QUIN oxidoreductase, oxidative stress response; HET: NAP; 2.50A {Homo sapiens} PDB: 2oby_A*

Probab=88.90  E-value=1.2  Score=40.33  Aligned_cols=90  Identities=9%  Similarity=-0.007  Sum_probs=59.5

Q ss_pred             cccCCCCCCcEEEECC--CcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCC-------C--------CCCCCce
Q 019861          171 GYLKPVLGGNIIDASC--GSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES-------N--------FPKDSID  233 (334)
Q Consensus       171 ~~l~~~~~~~vLDiGc--G~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~-------~--------~~~~~fD  233 (334)
                      +..+..++.+||-+|+  |.|..+..++... ..+|+++|.++..++.+++. ....       .        .....+|
T Consensus       156 ~~~~~~~g~~vlV~Ga~ggiG~~~~~~a~~~-Ga~Vi~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~d  233 (354)
T 2j8z_A          156 LVGNVQAGDYVLIHAGLSGVGTAAIQLTRMA-GAIPLVTAGSQKKLQMAEKL-GAAAGFNYKKEDFSEATLKFTKGAGVN  233 (354)
T ss_dssp             TTSCCCTTCEEEESSTTSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHH-TCSEEEETTTSCHHHHHHHHTTTSCEE
T ss_pred             HhcCCCCCCEEEEECCccHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHc-CCcEEEecCChHHHHHHHHHhcCCCce
Confidence            3345567889999984  3465555555542 24999999999888887543 2110       0        1124689


Q ss_pred             EEEeCccccCCCCHHHHHHHHHHcccCCcEEEEEEe
Q 019861          234 AVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTY  269 (334)
Q Consensus       234 ~V~~~~vl~h~~d~~~~L~~i~r~LkpgG~lii~~~  269 (334)
                      +|+....-     +  .+....+.|+++|++++...
T Consensus       234 ~vi~~~G~-----~--~~~~~~~~l~~~G~iv~~G~  262 (354)
T 2j8z_A          234 LILDCIGG-----S--YWEKNVNCLALDGRWVLYGL  262 (354)
T ss_dssp             EEEESSCG-----G--GHHHHHHHEEEEEEEEECCC
T ss_pred             EEEECCCc-----h--HHHHHHHhccCCCEEEEEec
Confidence            98876542     2  46778899999999887543

>3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol dehydrogenase superfamily protein, ALCO dehydrogenase groes-like domain; 1.55A {Shewanella oneidensis}

Probab=88.86  E-value=0.63  Score=41.31  Aligned_cols=87  Identities=9%  Similarity=0.028  Sum_probs=57.0

Q ss_pred             cccCCCCCCcEEEECCCc-CHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcC-----CCCCCCCceEEEeCccccCC
Q 019861          171 GYLKPVLGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQE-----SNFPKDSIDAVHAGAAIHCW  244 (334)
Q Consensus       171 ~~l~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~-----~~~~~~~fD~V~~~~vl~h~  244 (334)
                      +..+..++.+||-+|+|. |.++..+++.. ..+|++++ ++...+.+++.-...     ..+ .+.+|+|+-.-.    
T Consensus       136 ~~~~~~~g~~VlV~GaG~vG~~a~qlak~~-Ga~Vi~~~-~~~~~~~~~~lGa~~v~~d~~~v-~~g~Dvv~d~~g----  208 (315)
T 3goh_A          136 EKIPLTKQREVLIVGFGAVNNLLTQMLNNA-GYVVDLVS-ASLSQALAAKRGVRHLYREPSQV-TQKYFAIFDAVN----  208 (315)
T ss_dssp             TTSCCCSCCEEEEECCSHHHHHHHHHHHHH-TCEEEEEC-SSCCHHHHHHHTEEEEESSGGGC-CSCEEEEECC------
T ss_pred             hhcCCCCCCEEEEECCCHHHHHHHHHHHHc-CCEEEEEE-ChhhHHHHHHcCCCEEEcCHHHh-CCCccEEEECCC----
Confidence            455667789999999964 66777776653 23999999 988888887642110     011 456888875432    


Q ss_pred             CCHHHHHHHHHHcccCCcEEEEE
Q 019861          245 SSPSTGVAEISRVLRPGGVFVGT  267 (334)
Q Consensus       245 ~d~~~~L~~i~r~LkpgG~lii~  267 (334)
                       .+  .+....+.|+++|+++..
T Consensus       209 -~~--~~~~~~~~l~~~G~~v~~  228 (315)
T 3goh_A          209 -SQ--NAAALVPSLKANGHIICI  228 (315)
T ss_dssp             --------TTGGGEEEEEEEEEE
T ss_pred             -ch--hHHHHHHHhcCCCEEEEE
Confidence             22  235678899999998876

>2k5c_A Uncharacterized protein PF0385; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Pyrococcus furiosus}

Probab=88.83  E-value=0.045  Score=37.80  Aligned_cols=39  Identities=31%  Similarity=0.786  Sum_probs=22.7

Q ss_pred             CceeCCCCCCCccccC--CCCcccc--------------cccCCccccccccccc
Q 019861           70 NVLACPICYKPLTWIG--DSSLSIE--------------SAAGSSLQCNTCKKTY  108 (334)
Q Consensus        70 ~~l~CPiC~~~l~~~~--~~~~~~~--------------~~~~~~~~C~~C~~~~  108 (334)
                      .+-.||+||.++.+..  .+.+...              ....-.+.||.||-.+
T Consensus         7 ~~~~~PlCG~~L~W~eLIeQML~~en~~ei~kDr~~Fl~~~e~F~FkCP~CgEEF   61 (95)
T 2k5c_A            7 HMAKCPICGSPLKWEELIEEMLIIENFEEIVKDRERFLAQVEEFVFKCPVCGEEF   61 (95)
T ss_dssp             -CEECSSSCCEECHHHHHHHSTTCSTHHHHTTCHHHHHHHHHHSEEECTTTCCEE
T ss_pred             ccccCCcCCCccCHHHHHHHHHhhccHHHHHhhHHHHHHHHHHHhhcCCCccHHH
Confidence            4568999999885531  0011110              1133478999999765

>2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A*

Probab=88.78  E-value=1.7  Score=39.08  Aligned_cols=90  Identities=12%  Similarity=0.085  Sum_probs=60.7

Q ss_pred             ccCCCCCCcEEEECCCc-CHHHHHHHHcCCCC-eEEEEeCCHHHHHHHHHHHhcC------CC--------CCCCCceEE
Q 019861          172 YLKPVLGGNIIDASCGS-GLFSRIFAKSGLFS-LVVALDYSENMLKQCYEFVQQE------SN--------FPKDSIDAV  235 (334)
Q Consensus       172 ~l~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~-~v~giD~s~~~~~~a~~~~~~~------~~--------~~~~~fD~V  235 (334)
                      ..+. ++.+||-+|+|. |..+..+++.. .. +|+++|.++..++.+++.-...      ..        .....+|+|
T Consensus       163 ~~~~-~g~~VlV~GaG~vG~~~~q~a~~~-Ga~~Vi~~~~~~~~~~~~~~~Ga~~~~~~~~~~~~~~v~~~~~g~g~D~v  240 (348)
T 2d8a_A          163 AGPI-SGKSVLITGAGPLGLLGIAVAKAS-GAYPVIVSEPSDFRRELAKKVGADYVINPFEEDVVKEVMDITDGNGVDVF  240 (348)
T ss_dssp             TSCC-TTCCEEEECCSHHHHHHHHHHHHT-TCCSEEEECSCHHHHHHHHHHTCSEEECTTTSCHHHHHHHHTTTSCEEEE
T ss_pred             hcCC-CCCEEEEECCCHHHHHHHHHHHHc-CCCEEEEECCCHHHHHHHHHhCCCEEECCCCcCHHHHHHHHcCCCCCCEE
Confidence            3455 788999999964 66666666654 34 8999999998888887532110      00        012358998


Q ss_pred             EeCccccCCCCHHHHHHHHHHcccCCcEEEEEEe
Q 019861          236 HAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTY  269 (334)
Q Consensus       236 ~~~~vl~h~~d~~~~L~~i~r~LkpgG~lii~~~  269 (334)
                      +..-.     . ...++.+.+.|+++|+++....
T Consensus       241 id~~g-----~-~~~~~~~~~~l~~~G~iv~~g~  268 (348)
T 2d8a_A          241 LEFSG-----A-PKALEQGLQAVTPAGRVSLLGL  268 (348)
T ss_dssp             EECSC-----C-HHHHHHHHHHEEEEEEEEECCC
T ss_pred             EECCC-----C-HHHHHHHHHHHhcCCEEEEEcc
Confidence            86543     2 2457888999999999887543

>2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A*

Probab=88.35  E-value=1.4  Score=39.88  Aligned_cols=88  Identities=13%  Similarity=0.092  Sum_probs=60.4

Q ss_pred             cCCCCCCcEEEEC--CCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCC-------C-------CCCCCceEEE
Q 019861          173 LKPVLGGNIIDAS--CGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES-------N-------FPKDSIDAVH  236 (334)
Q Consensus       173 l~~~~~~~vLDiG--cG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~-------~-------~~~~~fD~V~  236 (334)
                      ....++.+||-+|  .|.|..+..+++.. ..+|+++|.+++.++.+++. ....       .       ...+.+|+|+
T Consensus       159 ~~~~~g~~VlV~Ga~G~iG~~~~q~a~~~-Ga~Vi~~~~~~~~~~~~~~~-Ga~~~~~~~~~~~~~~~~~~~~~g~D~vi  236 (362)
T 2c0c_A          159 GGLSEGKKVLVTAAAGGTGQFAMQLSKKA-KCHVIGTCSSDEKSAFLKSL-GCDRPINYKTEPVGTVLKQEYPEGVDVVY  236 (362)
T ss_dssp             TCCCTTCEEEETTTTBTTHHHHHHHHHHT-TCEEEEEESSHHHHHHHHHT-TCSEEEETTTSCHHHHHHHHCTTCEEEEE
T ss_pred             cCCCCCCEEEEeCCCcHHHHHHHHHHHhC-CCEEEEEECCHHHHHHHHHc-CCcEEEecCChhHHHHHHHhcCCCCCEEE
Confidence            3456688999999  34577776666653 34899999998888877752 2110       0       0124589988


Q ss_pred             eCccccCCCCHHHHHHHHHHcccCCcEEEEEEe
Q 019861          237 AGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTY  269 (334)
Q Consensus       237 ~~~vl~h~~d~~~~L~~i~r~LkpgG~lii~~~  269 (334)
                      ....     .  ..++.+.+.|+++|+++....
T Consensus       237 d~~g-----~--~~~~~~~~~l~~~G~iv~~g~  262 (362)
T 2c0c_A          237 ESVG-----G--AMFDLAVDALATKGRLIVIGF  262 (362)
T ss_dssp             ECSC-----T--HHHHHHHHHEEEEEEEEECCC
T ss_pred             ECCC-----H--HHHHHHHHHHhcCCEEEEEeC
Confidence            6543     2  468889999999999887544

>2dq4_A L-threonine 3-dehydrogenase; NAD-dependent, oxidoreductase, structural genomics, NPPSFA; HET: MES; 2.50A {Thermus thermophilus} PDB: 2ejv_A*

Probab=88.22  E-value=0.74  Score=41.40  Aligned_cols=88  Identities=13%  Similarity=0.120  Sum_probs=59.2

Q ss_pred             ccCCCCCCcEEEECCCc-CHHHHHHHHcCCCC-eEEEEeCCHHHHHHHHHHHhcCC-CCC------------CCCceEEE
Q 019861          172 YLKPVLGGNIIDASCGS-GLFSRIFAKSGLFS-LVVALDYSENMLKQCYEFVQQES-NFP------------KDSIDAVH  236 (334)
Q Consensus       172 ~l~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~-~v~giD~s~~~~~~a~~~~~~~~-~~~------------~~~fD~V~  236 (334)
                      ..+. ++.+||-+|+|. |.++..+++.. .. +|+++|.++..++.+++. .... ...            .+.+|+|+
T Consensus       160 ~~~~-~g~~VlV~GaG~vG~~~~q~a~~~-Ga~~Vi~~~~~~~~~~~~~~l-a~~v~~~~~~~~~~~~~~~~~~g~D~vi  236 (343)
T 2dq4_A          160 GSGV-SGKSVLITGAGPIGLMAAMVVRAS-GAGPILVSDPNPYRLAFARPY-ADRLVNPLEEDLLEVVRRVTGSGVEVLL  236 (343)
T ss_dssp             TTCC-TTSCEEEECCSHHHHHHHHHHHHT-TCCSEEEECSCHHHHGGGTTT-CSEEECTTTSCHHHHHHHHHSSCEEEEE
T ss_pred             hCCC-CCCEEEEECCCHHHHHHHHHHHHc-CCCEEEEECCCHHHHHHHHHh-HHhccCcCccCHHHHHHHhcCCCCCEEE
Confidence            4455 788999999854 66666666654 34 799999998877777653 2110 000            23588887


Q ss_pred             eCccccCCCCHHHHHHHHHHcccCCcEEEEEE
Q 019861          237 AGAAIHCWSSPSTGVAEISRVLRPGGVFVGTT  268 (334)
Q Consensus       237 ~~~vl~h~~d~~~~L~~i~r~LkpgG~lii~~  268 (334)
                      -.-.     . ...++...+.|+++|+++...
T Consensus       237 d~~g-----~-~~~~~~~~~~l~~~G~iv~~g  262 (343)
T 2dq4_A          237 EFSG-----N-EAAIHQGLMALIPGGEARILG  262 (343)
T ss_dssp             ECSC-----C-HHHHHHHHHHEEEEEEEEECC
T ss_pred             ECCC-----C-HHHHHHHHHHHhcCCEEEEEe
Confidence            5532     2 245788899999999988754

>2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus solfataricus}

Probab=88.22  E-value=0.66  Score=41.74  Aligned_cols=86  Identities=9%  Similarity=0.062  Sum_probs=58.4

Q ss_pred             CCCcEEEECCCc-CHHHHHHHHcC-CCCeEEEEeCCHHHHHHHHHHHhcCCC------------CC-CCCceEEEeCccc
Q 019861          177 LGGNIIDASCGS-GLFSRIFAKSG-LFSLVVALDYSENMLKQCYEFVQQESN------------FP-KDSIDAVHAGAAI  241 (334)
Q Consensus       177 ~~~~vLDiGcG~-G~~~~~l~~~~-~~~~v~giD~s~~~~~~a~~~~~~~~~------------~~-~~~fD~V~~~~vl  241 (334)
                      ++.+||-+|+|. |.++..+++.. +..+|+++|.++..++.+++. .....            +. ...+|+|+-.-. 
T Consensus       170 ~g~~VlV~GaG~vG~~aiqlak~~~~Ga~Vi~~~~~~~~~~~~~~l-Ga~~vi~~~~~~~~~~~~~~g~g~D~vid~~g-  247 (344)
T 2h6e_A          170 AEPVVIVNGIGGLAVYTIQILKALMKNITIVGISRSKKHRDFALEL-GADYVSEMKDAESLINKLTDGLGASIAIDLVG-  247 (344)
T ss_dssp             SSCEEEEECCSHHHHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHH-TCSEEECHHHHHHHHHHHHTTCCEEEEEESSC-
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHHHHh-CCCEEeccccchHHHHHhhcCCCccEEEECCC-
Confidence            688999999964 56666666542 134899999999888887753 11100            01 226899886543 


Q ss_pred             cCCCCHHHHHHHHHHcccCCcEEEEEEe
Q 019861          242 HCWSSPSTGVAEISRVLRPGGVFVGTTY  269 (334)
Q Consensus       242 ~h~~d~~~~L~~i~r~LkpgG~lii~~~  269 (334)
                          . ...++...+.|+++|+++....
T Consensus       248 ----~-~~~~~~~~~~l~~~G~iv~~g~  270 (344)
T 2h6e_A          248 ----T-EETTYNLGKLLAQEGAIILVGM  270 (344)
T ss_dssp             ----C-HHHHHHHHHHEEEEEEEEECCC
T ss_pred             ----C-hHHHHHHHHHhhcCCEEEEeCC
Confidence                2 2357889999999999887543

>3j21_i 50S ribosomal protein L37AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}

Probab=88.17  E-value=0.17  Score=35.47  Aligned_cols=32  Identities=25%  Similarity=0.585  Sum_probs=23.1

Q ss_pred             CceeCCCCCCCccccCCCCcccccccCCccccccccccccc
Q 019861           70 NVLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSG  110 (334)
Q Consensus        70 ~~l~CPiC~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~~~  110 (334)
                      ....||.|+..-....         ..++|.|..|+..+..
T Consensus        34 ~ky~CpfCGk~~vkR~---------a~GIW~C~kCg~~~AG   65 (83)
T 3j21_i           34 QKHTCPVCGRKAVKRI---------STGIWQCQKCGATFAG   65 (83)
T ss_dssp             SCBCCSSSCSSCEEEE---------ETTEEEETTTCCEEEC
T ss_pred             cccCCCCCCCceeEec---------CcCeEEcCCCCCEEeC
Confidence            3588999999643221         3479999999987643

>1qyp_A RNA polymerase II; transcription, RPB9, Zn ribbon, hyperthermophilic, extremophIle; NMR {Thermococcus celer} SCOP: g.41.3.1

Probab=88.13  E-value=0.15  Score=33.16  Aligned_cols=40  Identities=15%  Similarity=0.424  Sum_probs=22.9

Q ss_pred             ceeCCCCCCCccccCCCCc-ccccccCCccccccccccccc
Q 019861           71 VLACPICYKPLTWIGDSSL-SIESAAGSSLQCNTCKKTYSG  110 (334)
Q Consensus        71 ~l~CPiC~~~l~~~~~~~~-~~~~~~~~~~~C~~C~~~~~~  110 (334)
                      ...||-||........... +.......++.|.+|++.+..
T Consensus        15 ~~~Cp~Cg~~~~~~~q~Q~rsadep~T~fy~C~~Cg~~w~~   55 (57)
T 1qyp_A           15 KITCPKCGNDTAYWWEMQTRAGDEPSTIFYKCTKCGHTWRS   55 (57)
T ss_dssp             ECCCTTTCCSEEEEEEECCSSSSCSSEEEEEESSSCCEEEC
T ss_pred             EeECCCCCCCEEEEEEeecccCCCCCcEEEEcCCCCCEecc
Confidence            5789999995422111001 111123357999999987643

>2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin biosynthesis, metal-binding, NADP, oxidoreductase, zinc; 2.0A {Arabidopsis thaliana} PDB: 2cf6_A*

Probab=88.08  E-value=0.61  Score=42.30  Aligned_cols=88  Identities=16%  Similarity=0.097  Sum_probs=56.2

Q ss_pred             CCC-CCCcEEEECCCc-CHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCCCC--C--------CCCceEEEeCccc
Q 019861          174 KPV-LGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNF--P--------KDSIDAVHAGAAI  241 (334)
Q Consensus       174 ~~~-~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~--~--------~~~fD~V~~~~vl  241 (334)
                      ... ++.+||-+|+|. |.++..+++.. ..+|+++|.+++.++.+++.+..+.-+  .        .+.+|+|+-.-.-
T Consensus       176 ~~~~~g~~VlV~GaG~vG~~a~qlak~~-Ga~Vi~~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~~g~D~vid~~g~  254 (357)
T 2cf5_A          176 GLKQPGLRGGILGLGGVGHMGVKIAKAM-GHHVTVISSSNKKREEALQDLGADDYVIGSDQAKMSELADSLDYVIDTVPV  254 (357)
T ss_dssp             STTSTTCEEEEECCSHHHHHHHHHHHHH-TCEEEEEESSTTHHHHHHTTSCCSCEEETTCHHHHHHSTTTEEEEEECCCS
T ss_pred             CCCCCCCEEEEECCCHHHHHHHHHHHHC-CCeEEEEeCChHHHHHHHHHcCCceeeccccHHHHHHhcCCCCEEEECCCC
Confidence            344 688999999764 55566665542 248999999988777776333221100  0        1358988865432


Q ss_pred             cCCCCHHHHHHHHHHcccCCcEEEEEE
Q 019861          242 HCWSSPSTGVAEISRVLRPGGVFVGTT  268 (334)
Q Consensus       242 ~h~~d~~~~L~~i~r~LkpgG~lii~~  268 (334)
                      .      ..++...+.|+++|+++...
T Consensus       255 ~------~~~~~~~~~l~~~G~iv~~G  275 (357)
T 2cf5_A          255 H------HALEPYLSLLKLDGKLILMG  275 (357)
T ss_dssp             C------CCSHHHHTTEEEEEEEEECS
T ss_pred             h------HHHHHHHHHhccCCEEEEeC
Confidence            1      12566778999999988754

>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}

Probab=88.06  E-value=0.22  Score=34.84  Aligned_cols=27  Identities=37%  Similarity=0.992  Sum_probs=17.3

Q ss_pred             eeCCCCCCCccccCCCCcccccccCCcccccccccccc
Q 019861           72 LACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYS  109 (334)
Q Consensus        72 l~CPiC~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~~  109 (334)
                      ..||.|+.++.+.+           .+..|..|+.-|.
T Consensus         3 ~~CP~C~~~l~~~~-----------~~~~C~~C~~~~~   29 (81)
T 2jrp_A            3 ITCPVCHHALERNG-----------DTAHCETCAKDFS   29 (81)
T ss_dssp             CCCSSSCSCCEECS-----------SEEECTTTCCEEE
T ss_pred             CCCCCCCCccccCC-----------CceECccccccCC
Confidence            57888888877654           3455666655443

>1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc, oxidoreductase; HET: MSE; 1.85A {Sulfolobus solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A 1nvg_A 3i4c_A 2eer_A*

Probab=88.03  E-value=0.74  Score=41.47  Aligned_cols=87  Identities=16%  Similarity=0.216  Sum_probs=58.8

Q ss_pred             cCCCCCCcEEEECCCc--CHHHHHHHH-c-CCCCeEEEEeCCHHHHHHHHHHHhcCC-------C-------CCC-CCce
Q 019861          173 LKPVLGGNIIDASCGS--GLFSRIFAK-S-GLFSLVVALDYSENMLKQCYEFVQQES-------N-------FPK-DSID  233 (334)
Q Consensus       173 l~~~~~~~vLDiGcG~--G~~~~~l~~-~-~~~~~v~giD~s~~~~~~a~~~~~~~~-------~-------~~~-~~fD  233 (334)
                      .+..++.+||-+|+|.  |..+..++. . |.  +|+++|.++..++.+++. ....       .       ... +.+|
T Consensus       166 ~~~~~g~~vlV~Gagg~iG~~~~~~a~~~~Ga--~Vi~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~d  242 (347)
T 1jvb_A          166 ASLDPTKTLLVVGAGGGLGTMAVQIAKAVSGA--TIIGVDVREEAVEAAKRA-GADYVINASMQDPLAEIRRITESKGVD  242 (347)
T ss_dssp             TTCCTTCEEEEETTTSHHHHHHHHHHHHHTCC--EEEEEESSHHHHHHHHHH-TCSEEEETTTSCHHHHHHHHTTTSCEE
T ss_pred             cCCCCCCEEEEECCCccHHHHHHHHHHHcCCC--eEEEEcCCHHHHHHHHHh-CCCEEecCCCccHHHHHHHHhcCCCce
Confidence            4456688999999984  455444444 3 54  899999999888887653 2110       0       111 4789


Q ss_pred             EEEeCccccCCCCHHHHHHHHHHcccCCcEEEEEE
Q 019861          234 AVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTT  268 (334)
Q Consensus       234 ~V~~~~vl~h~~d~~~~L~~i~r~LkpgG~lii~~  268 (334)
                      +|+....     . ...++...+.|+++|+++...
T Consensus       243 ~vi~~~g-----~-~~~~~~~~~~l~~~G~iv~~g  271 (347)
T 1jvb_A          243 AVIDLNN-----S-EKTLSVYPKALAKQGKYVMVG  271 (347)
T ss_dssp             EEEESCC-----C-HHHHTTGGGGEEEEEEEEECC
T ss_pred             EEEECCC-----C-HHHHHHHHHHHhcCCEEEEEC
Confidence            8886543     1 235788889999999988754

>2zb4_A Prostaglandin reductase 2; rossmann fold, alternative splicing, cytoplasm, NADP, oxidoreductase; HET: NAP 5OP; 1.63A {Homo sapiens} PDB: 2zb7_A* 2zb8_A* 2w98_A* 2vna_A* 2w4q_A* 1vj1_A 2zb3_A*

Probab=87.94  E-value=1.2  Score=40.27  Aligned_cols=90  Identities=7%  Similarity=-0.059  Sum_probs=59.8

Q ss_pred             ccCCCCC--CcEEEECC--CcCHHHHHHHHcCCCC-eEEEEeCCHHHHHHHHHHHhcCC-------C-------CCCCCc
Q 019861          172 YLKPVLG--GNIIDASC--GSGLFSRIFAKSGLFS-LVVALDYSENMLKQCYEFVQQES-------N-------FPKDSI  232 (334)
Q Consensus       172 ~l~~~~~--~~vLDiGc--G~G~~~~~l~~~~~~~-~v~giD~s~~~~~~a~~~~~~~~-------~-------~~~~~f  232 (334)
                      ..+..++  .+||-.|+  |.|.....++... .. +|+++|.++..++.+++.+....       .       ...+.+
T Consensus       153 ~~~~~~g~~~~vlI~GasggiG~~~~~~a~~~-Ga~~Vi~~~~~~~~~~~~~~~~g~~~~~d~~~~~~~~~~~~~~~~~~  231 (357)
T 2zb4_A          153 KGHITAGSNKTMVVSGAAGACGSVAGQIGHFL-GCSRVVGICGTHEKCILLTSELGFDAAINYKKDNVAEQLRESCPAGV  231 (357)
T ss_dssp             HSCCCTTSCCEEEESSTTBHHHHHHHHHHHHT-TCSEEEEEESCHHHHHHHHHTSCCSEEEETTTSCHHHHHHHHCTTCE
T ss_pred             hcCCCCCCccEEEEECCCcHHHHHHHHHHHHC-CCCeEEEEeCCHHHHHHHHHHcCCceEEecCchHHHHHHHHhcCCCC
Confidence            3455567  89999998  3455555555543 34 89999999887777765332110       0       001258


Q ss_pred             eEEEeCccccCCCCHHHHHHHHHHcccCCcEEEEEEe
Q 019861          233 DAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTY  269 (334)
Q Consensus       233 D~V~~~~vl~h~~d~~~~L~~i~r~LkpgG~lii~~~  269 (334)
                      |+|+....       ...++...+.|+++|++++...
T Consensus       232 d~vi~~~G-------~~~~~~~~~~l~~~G~iv~~G~  261 (357)
T 2zb4_A          232 DVYFDNVG-------GNISDTVISQMNENSHIILCGQ  261 (357)
T ss_dssp             EEEEESCC-------HHHHHHHHHTEEEEEEEEECCC
T ss_pred             CEEEECCC-------HHHHHHHHHHhccCcEEEEECC
Confidence            98887654       2568889999999999887543

>1wly_A CAAR, 2-haloacrylate reductase; NADPH-dependent oxidoreductase, oxidoreductase; 1.30A {Burkholderia SP}

Probab=87.57  E-value=1.8  Score=38.67  Aligned_cols=89  Identities=15%  Similarity=0.115  Sum_probs=59.5

Q ss_pred             ccCCCCCCcEEEECC--CcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCC-------C--------CCCCCceE
Q 019861          172 YLKPVLGGNIIDASC--GSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES-------N--------FPKDSIDA  234 (334)
Q Consensus       172 ~l~~~~~~~vLDiGc--G~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~-------~--------~~~~~fD~  234 (334)
                      ..+..++.+||-.|+  |.|..+..++... ..+++++|.++..++.+++. ....       .        .....+|+
T Consensus       140 ~~~~~~g~~vlV~Ga~ggiG~~~~~~a~~~-G~~Vi~~~~~~~~~~~~~~~-g~~~~~d~~~~~~~~~i~~~~~~~~~d~  217 (333)
T 1wly_A          140 THKVKPGDYVLIHAAAGGMGHIMVPWARHL-GATVIGTVSTEEKAETARKL-GCHHTINYSTQDFAEVVREITGGKGVDV  217 (333)
T ss_dssp             TSCCCTTCEEEETTTTSTTHHHHHHHHHHT-TCEEEEEESSHHHHHHHHHH-TCSEEEETTTSCHHHHHHHHHTTCCEEE
T ss_pred             hhCCCCCCEEEEECCccHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHc-CCCEEEECCCHHHHHHHHHHhCCCCCeE
Confidence            345567889999995  4566655555542 24999999999888877653 2110       0        01235899


Q ss_pred             EEeCccccCCCCHHHHHHHHHHcccCCcEEEEEEe
Q 019861          235 VHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTY  269 (334)
Q Consensus       235 V~~~~vl~h~~d~~~~L~~i~r~LkpgG~lii~~~  269 (334)
                      |+....-       ..++...+.|+++|+++....
T Consensus       218 vi~~~g~-------~~~~~~~~~l~~~G~iv~~g~  245 (333)
T 1wly_A          218 VYDSIGK-------DTLQKSLDCLRPRGMCAAYGH  245 (333)
T ss_dssp             EEECSCT-------TTHHHHHHTEEEEEEEEECCC
T ss_pred             EEECCcH-------HHHHHHHHhhccCCEEEEEec
Confidence            9866532       347888999999999887543

>3cc2_Z 50S ribosomal protein L37AE, 50S ribosomal protein L32E; genomic sequnece for R-proteins, ribonucleoprotein, ribosoma protein, RNA-binding; HET: 1MA OMU OMG UR3 PSU; 2.40A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 3cc4_Z* 3cc7_Z* 3cce_Z* 3ccj_Z* 3ccl_Z* 3ccm_Z* 3ccq_Z* 3ccr_Z* 3ccs_Z* 3ccu_Z* 3ccv_Z* 3cd6_Z* 3cma_Z* 3cme_Z* 3i55_Z* 3i56_Z* 3cpw_Y* 4adx_Z

Probab=87.44  E-value=0.17  Score=37.75  Aligned_cols=33  Identities=24%  Similarity=0.471  Sum_probs=23.0

Q ss_pred             CCceeCCCCCCCccccCCCCcccccccCCccccccccccccc
Q 019861           69 KNVLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSG  110 (334)
Q Consensus        69 ~~~l~CPiC~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~~~  110 (334)
                      .....||.||.......         ..++|+|..|+..+..
T Consensus        58 ~akytCPfCGk~~vKR~---------avGIW~C~~Cgk~fAG   90 (116)
T 3cc2_Z           58 NEDHACPNCGEDRVDRQ---------GTGIWQCSYCDYKFTG   90 (116)
T ss_dssp             HSCEECSSSCCEEEEEE---------ETTEEEETTTCCEEEC
T ss_pred             ccCCcCCCCCCceeEec---------CceeEECCCCCCEEEC
Confidence            34589999998432221         2379999999987743

>4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein structure initiati structural genomics research consortium, nysgrc; 2.45A {Rhizobium etli}

Probab=87.34  E-value=1.4  Score=39.67  Aligned_cols=91  Identities=13%  Similarity=0.081  Sum_probs=60.9

Q ss_pred             cccCCCCCCcEEEECC--CcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCC-CC------------CCCCceEE
Q 019861          171 GYLKPVLGGNIIDASC--GSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES-NF------------PKDSIDAV  235 (334)
Q Consensus       171 ~~l~~~~~~~vLDiGc--G~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~-~~------------~~~~fD~V  235 (334)
                      +.....++.+||-+|+  |.|..+..+++.. ..+|+++|.++..++.+++.-.... ..            ..+.+|+|
T Consensus       161 ~~~~~~~g~~VlV~Gg~g~iG~~~~~~a~~~-Ga~Vi~~~~~~~~~~~~~~lGa~~~~~~~~~~~~~~~~~~~~~g~Dvv  239 (353)
T 4dup_A          161 QMAGLTEGESVLIHGGTSGIGTTAIQLARAF-GAEVYATAGSTGKCEACERLGAKRGINYRSEDFAAVIKAETGQGVDII  239 (353)
T ss_dssp             TTTCCCTTCEEEESSTTSHHHHHHHHHHHHT-TCEEEEEESSHHHHHHHHHHTCSEEEETTTSCHHHHHHHHHSSCEEEE
T ss_pred             HhcCCCCCCEEEEEcCCCHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHhcCCCEEEeCCchHHHHHHHHHhCCCceEE
Confidence            4455667889999953  3466666666653 3499999999998888876321100 00            02468998


Q ss_pred             EeCccccCCCCHHHHHHHHHHcccCCcEEEEEEe
Q 019861          236 HAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTY  269 (334)
Q Consensus       236 ~~~~vl~h~~d~~~~L~~i~r~LkpgG~lii~~~  269 (334)
                      +....-.       .+....+.|+++|++++...
T Consensus       240 id~~g~~-------~~~~~~~~l~~~G~iv~~g~  266 (353)
T 4dup_A          240 LDMIGAA-------YFERNIASLAKDGCLSIIAF  266 (353)
T ss_dssp             EESCCGG-------GHHHHHHTEEEEEEEEECCC
T ss_pred             EECCCHH-------HHHHHHHHhccCCEEEEEEe
Confidence            8765422       47788899999999887543

>2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A

Probab=87.25  E-value=1  Score=39.68  Aligned_cols=56  Identities=25%  Similarity=0.307  Sum_probs=33.2

Q ss_pred             HHHHHHHHHcccCCcEEEEEEeccCCCCCchHHHHHHHHHhhhhcCccCCCCHHHHHHHHHhCCCcEEE
Q 019861          248 STGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLCRACGLVDFK  316 (334)
Q Consensus       248 ~~~L~~i~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~l~~ll~~~Gf~~v~  316 (334)
                      ..+++++.++|+|||.+++..........  ..           ..+..+.-...+..++++.||....
T Consensus        77 ~~~~~~~~rvLk~~G~l~i~~~d~~~~~~--~~-----------g~~~~~~~~~~l~~~~~~~Gf~~~~  132 (297)
T 2zig_A           77 DRVWREVFRLLVPGGRLVIVVGDVAVARR--RF-----------GRHLVFPLHADIQVRCRKLGFDNLN  132 (297)
T ss_dssp             HHHHHHHHHHEEEEEEEEEEECCEEEECC-----------------EEEECHHHHHHHHHHHTTCEEEE
T ss_pred             HHHHHHHHHHcCCCcEEEEEECCCccccc--cC-----------CcccccccHHHHHHHHHHcCCeeec
Confidence            35678999999999999887653210000  00           0010111135677888899997655

>4eez_A Alcohol dehydrogenase 1; site-saturation mutagenesis, directed evolution, isobutyraldehyde, biofuel, oxidoreductase; HET: PG4; 1.90A {Lactococcus lactis subsp} PDB: 4eex_A*

Probab=87.02  E-value=1.8  Score=38.81  Aligned_cols=89  Identities=16%  Similarity=0.128  Sum_probs=57.7

Q ss_pred             CCCCCCcEEEECCCcC-HHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCC------C--------CCCCCceEEEeC
Q 019861          174 KPVLGGNIIDASCGSG-LFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES------N--------FPKDSIDAVHAG  238 (334)
Q Consensus       174 ~~~~~~~vLDiGcG~G-~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~------~--------~~~~~fD~V~~~  238 (334)
                      ...++.+||=+|+|.+ .++..+++.....+|+++|.+++-++.+++.-....      .        .....+|.++..
T Consensus       160 ~~~~g~~VlV~GaG~~g~~a~~~a~~~~g~~Vi~~~~~~~r~~~~~~~Ga~~~i~~~~~~~~~~v~~~t~g~g~d~~~~~  239 (348)
T 4eez_A          160 GVKPGDWQVIFGAGGLGNLAIQYAKNVFGAKVIAVDINQDKLNLAKKIGADVTINSGDVNPVDEIKKITGGLGVQSAIVC  239 (348)
T ss_dssp             TCCTTCEEEEECCSHHHHHHHHHHHHTSCCEEEEEESCHHHHHHHHHTTCSEEEEC-CCCHHHHHHHHTTSSCEEEEEEC
T ss_pred             CCCCCCEEEEEcCCCccHHHHHHHHHhCCCEEEEEECcHHHhhhhhhcCCeEEEeCCCCCHHHHhhhhcCCCCceEEEEe
Confidence            4567889999999874 444444443324699999999988887775422110      0        112346666544


Q ss_pred             ccccCCCCHHHHHHHHHHcccCCcEEEEEE
Q 019861          239 AAIHCWSSPSTGVAEISRVLRPGGVFVGTT  268 (334)
Q Consensus       239 ~vl~h~~d~~~~L~~i~r~LkpgG~lii~~  268 (334)
                      ..     . ...+....+.|+++|.+++..
T Consensus       240 ~~-----~-~~~~~~~~~~l~~~G~~v~~g  263 (348)
T 4eez_A          240 AV-----A-RIAFEQAVASLKPMGKMVAVA  263 (348)
T ss_dssp             CS-----C-HHHHHHHHHTEEEEEEEEECC
T ss_pred             cc-----C-cchhheeheeecCCceEEEEe
Confidence            32     2 345788899999999988754

>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli}

Probab=86.81  E-value=4.4  Score=36.97  Aligned_cols=101  Identities=10%  Similarity=-0.004  Sum_probs=63.3

Q ss_pred             HHHcccCC-CCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCC------------CCCCCCceE
Q 019861          168 LMKGYLKP-VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES------------NFPKDSIDA  234 (334)
Q Consensus       168 ~l~~~l~~-~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~------------~~~~~~fD~  234 (334)
                      .+++.+.. ..+.+||.|+.+.|.++..++...    ++.+.-|--.....+.++....            .-..+.+|+
T Consensus        28 ~ll~~~~~~~~~~~~~~~~d~~gal~~~~~~~~----~~~~~ds~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~  103 (375)
T 4dcm_A           28 YLLQQLDDTEIRGPVLILNDAFGALSCALAEHK----PYSIGDSYISELATRENLRLNGIDESSVKFLDSTADYPQQPGV  103 (375)
T ss_dssp             HHHHTTTTCCCCSCEEEECCSSSHHHHHTGGGC----CEEEESCHHHHHHHHHHHHHTTCCGGGSEEEETTSCCCSSCSE
T ss_pred             HHHHhhhhccCCCCEEEECCCCCHHHHhhccCC----ceEEEhHHHHHHHHHHHHHHcCCCccceEecccccccccCCCE
Confidence            44444432 245789999999999998887653    3444335444444444443321            122457898


Q ss_pred             EEeCccccCCCCHHHHHHHHHHcccCCcEEEEEEeccCC
Q 019861          235 VHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDG  273 (334)
Q Consensus       235 V~~~~vl~h~~d~~~~L~~i~r~LkpgG~lii~~~~~~~  273 (334)
                      |+...- .+.......|..+...|++|+.+++...+...
T Consensus       104 v~~~lp-k~~~~l~~~L~~l~~~l~~~~~i~~~g~~~~~  141 (375)
T 4dcm_A          104 VLIKVP-KTLALLEQQLRALRKVVTSDTRIIAGAKARDI  141 (375)
T ss_dssp             EEEECC-SCHHHHHHHHHHHHTTCCTTSEEEEEEEGGGC
T ss_pred             EEEEcC-CCHHHHHHHHHHHHhhCCCCCEEEEEecccch
Confidence            887432 22223346788899999999999887776543

>1zkd_A DUF185; NESG, RPR58, structural genomics, PSI, protein structure INI northeast structural genomics consortium, unknown function; 2.10A {Rhodopseudomonas palustris} SCOP: c.66.1.52

Probab=86.30  E-value=2.5  Score=38.89  Aligned_cols=67  Identities=9%  Similarity=0.045  Sum_probs=44.9

Q ss_pred             CCcEEEECCCcCHHHHHHHHc-------CCCCeEEEEeCCHHHHHHHHHHHhcCC---------CCCCCCceEEEeCccc
Q 019861          178 GGNIIDASCGSGLFSRIFAKS-------GLFSLVVALDYSENMLKQCYEFVQQES---------NFPKDSIDAVHAGAAI  241 (334)
Q Consensus       178 ~~~vLDiGcG~G~~~~~l~~~-------~~~~~v~giD~s~~~~~~a~~~~~~~~---------~~~~~~fD~V~~~~vl  241 (334)
                      .-.|+|+|.|.|.++..+.+.       ....+|+.||+|+...+.-++.+....         .++++ .-+|+++.+|
T Consensus        81 ~~~ivElGaG~GtLa~diL~~l~~~p~~~~~~~y~iVE~Sp~Lr~~Q~~~L~~~~~v~W~~~l~~lp~~-~~~viANE~f  159 (387)
T 1zkd_A           81 TLRLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEINPVLRQKQQTLLAGIRNIHWHDSFEDVPEG-PAVILANEYF  159 (387)
T ss_dssp             SEEEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEEECCCHHHHHHHHHHSTTCSSEEEESSGGGSCCS-SEEEEEESSG
T ss_pred             CcEEEEECCCcchHHHHHHHHHHhCCccccccEEEEEecCHHHHHHHHHHhcCCCCeEEeCChhhcCCC-CeEEEecccc
Confidence            457999999999997766543       123489999999988877666654321         12322 4566677666


Q ss_pred             cCCC
Q 019861          242 HCWS  245 (334)
Q Consensus       242 ~h~~  245 (334)
                      .-+|
T Consensus       160 DAlP  163 (387)
T 1zkd_A          160 DVLP  163 (387)
T ss_dssp             GGSC
T ss_pred             ccCc
Confidence            5554

>4a17_Y RPL37A, 60S ribosomal protein L32; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_Y 4a1c_Y 4a1e_Y

Probab=86.05  E-value=0.21  Score=36.41  Aligned_cols=32  Identities=31%  Similarity=0.585  Sum_probs=22.9

Q ss_pred             CceeCCCCCCCccccCCCCcccccccCCccccccccccccc
Q 019861           70 NVLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSG  110 (334)
Q Consensus        70 ~~l~CPiC~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~~~  110 (334)
                      ..+.||.||..-....         ..++|.|..|+..+..
T Consensus        35 aky~CpfCgk~~vKR~---------a~GIW~C~kCg~~~AG   66 (103)
T 4a17_Y           35 AKYGCPFCGKVAVKRA---------AVGIWKCKPCKKIIAG   66 (103)
T ss_dssp             SCEECTTTCCEEEEEE---------ETTEEEETTTTEEEEC
T ss_pred             cCCCCCCCCCceeeec---------CcceEEcCCCCCEEeC
Confidence            4588999998633221         3479999999987743

>2c7p_A Modification methylase HHAI; DNA methyltransferase, methyltransferase, base flipping, restriction system, transferase; HET: 5CM A1P SAH EPE CIT; 1.7A {Haemophilus haemolyticus} SCOP: c.66.1.26 PDB: 10mh_A* 1m0e_A* 1mht_A* 1hmy_A* 1skm_A* 2c7o_A* 2c7q_A* 2hmy_B* 2hr1_A* 3eeo_A* 3mht_A* 4mht_A* 5mht_A* 6mht_A* 7mht_A* 8mht_A* 9mht_A* 2zcj_A* 2z6u_A* 2z6q_A* ...

Probab=85.97  E-value=1.5  Score=39.32  Aligned_cols=61  Identities=18%  Similarity=0.182  Sum_probs=47.1

Q ss_pred             CCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCC-----CC---CCCCceEEEeC
Q 019861          177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES-----NF---PKDSIDAVHAG  238 (334)
Q Consensus       177 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~-----~~---~~~~fD~V~~~  238 (334)
                      .+.++||+.||.|.+...+...|. ..+.++|+++.+++..+.++....     .+   .-..+|+|+..
T Consensus        10 ~~~~~~dLFaG~Gg~~~g~~~aG~-~~v~~~e~d~~a~~t~~~N~~~~~~~Di~~~~~~~~~~~D~l~~g   78 (327)
T 2c7p_A           10 TGLRFIDLFAGLGGFRLALESCGA-ECVYSNEWDKYAQEVYEMNFGEKPEGDITQVNEKTIPDHDILCAG   78 (327)
T ss_dssp             TTCEEEEETCTTTHHHHHHHHTTC-EEEEEECCCHHHHHHHHHHHSCCCBSCGGGSCGGGSCCCSEEEEE
T ss_pred             CCCcEEEECCCcCHHHHHHHHCCC-eEEEEEeCCHHHHHHHHHHcCCCCcCCHHHcCHhhCCCCCEEEEC
Confidence            357899999999999999999884 467899999999998888865321     01   11258999975

>1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A

Probab=85.85  E-value=0.57  Score=42.52  Aligned_cols=88  Identities=14%  Similarity=0.211  Sum_probs=58.4

Q ss_pred             cCCCCCCcEEEECCCc-CHHHHHHHHc-CCCCeEEEEeCCHHHHHHHHHHHhcCC--------C----CCCCCceEEEeC
Q 019861          173 LKPVLGGNIIDASCGS-GLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQQES--------N----FPKDSIDAVHAG  238 (334)
Q Consensus       173 l~~~~~~~vLDiGcG~-G~~~~~l~~~-~~~~~v~giD~s~~~~~~a~~~~~~~~--------~----~~~~~fD~V~~~  238 (334)
                      .+..++.+||-+|+|. |.++..+++. |.  +|+++|.++..++.+++. ....        .    +. +.+|+|+-.
T Consensus       175 ~~~~~g~~VlV~GaG~vG~~~~qlak~~Ga--~Vi~~~~~~~~~~~~~~l-Ga~~v~~~~~~~~~~~~~~-~~~D~vid~  250 (360)
T 1piw_A          175 NGCGPGKKVGIVGLGGIGSMGTLISKAMGA--ETYVISRSSRKREDAMKM-GADHYIATLEEGDWGEKYF-DTFDLIVVC  250 (360)
T ss_dssp             TTCSTTCEEEEECCSHHHHHHHHHHHHHTC--EEEEEESSSTTHHHHHHH-TCSEEEEGGGTSCHHHHSC-SCEEEEEEC
T ss_pred             cCCCCCCEEEEECCCHHHHHHHHHHHHCCC--EEEEEcCCHHHHHHHHHc-CCCEEEcCcCchHHHHHhh-cCCCEEEEC
Confidence            4556789999999864 6666666654 44  899999998888888763 2110        0    11 468999865


Q ss_pred             ccccCCCCHHHHHHHHHHcccCCcEEEEEE
Q 019861          239 AAIHCWSSPSTGVAEISRVLRPGGVFVGTT  268 (334)
Q Consensus       239 ~vl~h~~d~~~~L~~i~r~LkpgG~lii~~  268 (334)
                      -.-.    +...++...+.|+++|+++...
T Consensus       251 ~g~~----~~~~~~~~~~~l~~~G~iv~~g  276 (360)
T 1piw_A          251 ASSL----TDIDFNIMPKAMKVGGRIVSIS  276 (360)
T ss_dssp             CSCS----TTCCTTTGGGGEEEEEEEEECC
T ss_pred             CCCC----cHHHHHHHHHHhcCCCEEEEec
Confidence            4320    0112556788999999988643

>1ffk_W Ribosomal protein L37AE; ribosome assembly, RNA-RNA, protein-RNA, protein-protein; 2.40A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1jj2_Y 1k73_1* 1k8a_1* 1k9m_1* 1kc8_1* 1kd1_1* 1kqs_Y* 1m1k_1* 1m90_1* 1n8r_1* 1nji_1* 1q7y_1* 1q81_1* 1q82_1* 1q86_1* 1qvf_Y 1qvg_Y 1w2b_Y 3cxc_Y*

Probab=85.76  E-value=0.21  Score=34.25  Aligned_cols=33  Identities=27%  Similarity=0.529  Sum_probs=22.9

Q ss_pred             CCceeCCCCCCCccccCCCCcccccccCCccccccccccccc
Q 019861           69 KNVLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSG  110 (334)
Q Consensus        69 ~~~l~CPiC~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~~~  110 (334)
                      .....||.|+..-....         ..++|.|..|+..+..
T Consensus        25 ~~ky~C~fCgk~~vkR~---------a~GIW~C~~C~~~~AG   57 (73)
T 1ffk_W           25 KKKYKCPVCGFPKLKRA---------STSIWVCGHCGYKIAG   57 (73)
T ss_pred             ccCccCCCCCCceeEEE---------EeEEEECCCCCcEEEC
Confidence            34588999998432211         2378999999987643

>4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal binding-site; 1.87A {Escherichia coli}

Probab=85.71  E-value=3.1  Score=37.12  Aligned_cols=93  Identities=17%  Similarity=0.095  Sum_probs=59.8

Q ss_pred             ccCCCCCCcEEEECCCc-CHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcC------CC--------CCCCCceEEE
Q 019861          172 YLKPVLGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQE------SN--------FPKDSIDAVH  236 (334)
Q Consensus       172 ~l~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~------~~--------~~~~~fD~V~  236 (334)
                      .....++.+||=+|+|. |.++..+++......++++|.++.-++.+++.-...      ..        -....+|+|+
T Consensus       155 ~~~~~~g~~VlV~GaG~vG~~aiq~ak~~G~~~vi~~~~~~~k~~~a~~lGa~~~i~~~~~~~~~~~~~~~~~~g~d~v~  234 (346)
T 4a2c_A          155 LAQGCENKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDISSEKLALAKSFGAMQTFNSSEMSAPQMQSVLRELRFNQLIL  234 (346)
T ss_dssp             HTTCCTTSEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCSEEEETTTSCHHHHHHHHGGGCSSEEEE
T ss_pred             HhccCCCCEEEEECCCCcchHHHHHHHHcCCcEEEEEechHHHHHHHHHcCCeEEEeCCCCCHHHHHHhhcccCCccccc
Confidence            34456688999999876 455555555532346789999999888887632110      00        0123467776


Q ss_pred             eCccccCCCCHHHHHHHHHHcccCCcEEEEEEec
Q 019861          237 AGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYI  270 (334)
Q Consensus       237 ~~~vl~h~~d~~~~L~~i~r~LkpgG~lii~~~~  270 (334)
                      ..-     ..+ ..++...+.|++||.+++....
T Consensus       235 d~~-----G~~-~~~~~~~~~l~~~G~~v~~g~~  262 (346)
T 4a2c_A          235 ETA-----GVP-QTVELAVEIAGPHAQLALVGTL  262 (346)
T ss_dssp             ECS-----CSH-HHHHHHHHHCCTTCEEEECCCC
T ss_pred             ccc-----ccc-chhhhhhheecCCeEEEEEecc
Confidence            443     222 4578888999999998875543

>1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A*

Probab=85.37  E-value=1.4  Score=40.07  Aligned_cols=88  Identities=16%  Similarity=0.111  Sum_probs=56.0

Q ss_pred             CCC-CCCcEEEECCCc-CHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCCCC----------CCCCceEEEeCccc
Q 019861          174 KPV-LGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNF----------PKDSIDAVHAGAAI  241 (334)
Q Consensus       174 ~~~-~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~----------~~~~fD~V~~~~vl  241 (334)
                      ... ++.+||-+|+|. |.++..+++.. ..+|+++|.++..++.+++.+.....+          ..+.+|+|+..-..
T Consensus       183 ~~~~~g~~VlV~GaG~vG~~~~q~a~~~-Ga~Vi~~~~~~~~~~~~~~~lGa~~v~~~~~~~~~~~~~~~~D~vid~~g~  261 (366)
T 1yqd_A          183 GLDEPGKHIGIVGLGGLGHVAVKFAKAF-GSKVTVISTSPSKKEEALKNFGADSFLVSRDQEQMQAAAGTLDGIIDTVSA  261 (366)
T ss_dssp             TCCCTTCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESCGGGHHHHHHTSCCSEEEETTCHHHHHHTTTCEEEEEECCSS
T ss_pred             CcCCCCCEEEEECCCHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHhcCCceEEeccCHHHHHHhhCCCCEEEECCCc
Confidence            344 688999999764 55555665543 248999999988777766433221100          01358998865432


Q ss_pred             cCCCCHHHHHHHHHHcccCCcEEEEEE
Q 019861          242 HCWSSPSTGVAEISRVLRPGGVFVGTT  268 (334)
Q Consensus       242 ~h~~d~~~~L~~i~r~LkpgG~lii~~  268 (334)
                      ..      .++...+.|+++|+++...
T Consensus       262 ~~------~~~~~~~~l~~~G~iv~~g  282 (366)
T 1yqd_A          262 VH------PLLPLFGLLKSHGKLILVG  282 (366)
T ss_dssp             CC------CSHHHHHHEEEEEEEEECC
T ss_pred             HH------HHHHHHHHHhcCCEEEEEc
Confidence            21      2456778899999987754

>2akl_A PHNA-like protein PA0128; two domains, Zn binding protein, beta-strand protein, structural genomics, PSI; NMR {Pseudomonas aeruginosa PAO1} SCOP: b.34.11.2 g.41.3.5

Probab=85.12  E-value=0.38  Score=36.50  Aligned_cols=30  Identities=30%  Similarity=0.685  Sum_probs=22.9

Q ss_pred             eeCCCCCCCccccCCCCcccccccCCcccccccccccccc
Q 019861           72 LACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSGV  111 (334)
Q Consensus        72 l~CPiC~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~~~~  111 (334)
                      -.||.|++...-..          ...+.|+.|++.|...
T Consensus        28 P~CP~C~seytYeD----------g~l~vCPeC~hEW~~~   57 (138)
T 2akl_A           28 PPCPQCNSEYTYED----------GALLVCPECAHEWSPN   57 (138)
T ss_dssp             CCCTTTCCCCCEEC----------SSSEEETTTTEEECTT
T ss_pred             CCCCCCCCcceEec----------CCeEECCccccccCCc
Confidence            46999999765443          2579999999999543

>1tfi_A Transcriptional elongation factor SII; transcription regulation; NMR {Homo sapiens} SCOP: g.41.3.1

Probab=84.38  E-value=0.29  Score=30.93  Aligned_cols=39  Identities=18%  Similarity=0.419  Sum_probs=22.6

Q ss_pred             CceeCCCCCCCccccCCC-CcccccccCCccccccccccc
Q 019861           70 NVLACPICYKPLTWIGDS-SLSIESAAGSSLQCNTCKKTY  108 (334)
Q Consensus        70 ~~l~CPiC~~~l~~~~~~-~~~~~~~~~~~~~C~~C~~~~  108 (334)
                      ....||.|+......... .-+-+.....++.|.+|++.+
T Consensus         8 ~~~~Cp~Cg~~~a~f~q~Q~RsaDE~mT~Fy~C~~Cg~~w   47 (50)
T 1tfi_A            8 DLFTCGKCKKKNCTYTQVQTRSADEPMTTFVVCNECGNRW   47 (50)
T ss_dssp             CCSCCSSSCSSCEEEEEECSSSSSSCCEEEEEESSSCCEE
T ss_pred             CccCCCCCCCCEEEEEEecCcCCCCCceEEEEcCCCCCeE
Confidence            347899999965322110 011111233579999999865

>1g55_A DNA cytosine methyltransferase DNMT2; human DNA methyltransferase homologue; HET: DNA SAH; 1.80A {Homo sapiens} SCOP: c.66.1.26

Probab=83.77  E-value=1.2  Score=40.16  Aligned_cols=61  Identities=13%  Similarity=0.134  Sum_probs=46.9

Q ss_pred             CcEEEECCCcCHHHHHHHHcCC-CCeEEEEeCCHHHHHHHHHHHhcCC----C---CC-----CCCceEEEeCc
Q 019861          179 GNIIDASCGSGLFSRIFAKSGL-FSLVVALDYSENMLKQCYEFVQQES----N---FP-----KDSIDAVHAGA  239 (334)
Q Consensus       179 ~~vLDiGcG~G~~~~~l~~~~~-~~~v~giD~s~~~~~~a~~~~~~~~----~---~~-----~~~fD~V~~~~  239 (334)
                      .++||+-||.|.+...+...|. ...+.++|+++.+++..+.++....    .   +.     ...+|+|+..-
T Consensus         3 ~~v~dLFaG~Gg~~~g~~~~G~~~~~v~~~E~d~~a~~~~~~N~~~~~~~~~Di~~~~~~~~~~~~~D~l~~gp   76 (343)
T 1g55_A            3 LRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYNFPHTQLLAKTIEGITLEEFDRLSFDMILMSP   76 (343)
T ss_dssp             EEEEEETCTTCHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCTTSCEECSCGGGCCHHHHHHHCCSEEEECC
T ss_pred             CeEEEeCcCccHHHHHHHHCCCCceEEEEEeCCHHHHHHHHHhccccccccCCHHHccHhHcCcCCcCEEEEcC
Confidence            5899999999999999999873 1368999999999999998875422    1   11     11589999853

>2k4x_A 30S ribosomal protein S27AE; metal-binding, ribonucleoprotein, zinc, zinc-finger, structural genomics, PSI-2; NMR {Thermoplasma acidophilum} SCOP: g.41.8.8

Probab=83.50  E-value=0.57  Score=30.19  Aligned_cols=30  Identities=20%  Similarity=0.335  Sum_probs=21.8

Q ss_pred             ceeCCCCCCCccccCCCCcccccccCCcccccccccccc
Q 019861           71 VLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYS  109 (334)
Q Consensus        71 ~l~CPiC~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~~  109 (334)
                      +.-||.||..+....         ....+.|..|+..+.
T Consensus        18 ~~fCPkCG~~~~ma~---------~~dr~~C~kCgyt~~   47 (55)
T 2k4x_A           18 HRFCPRCGPGVFLAE---------HADRYSCGRCGYTEF   47 (55)
T ss_dssp             SCCCTTTTTTCCCEE---------CSSEEECTTTCCCEE
T ss_pred             cccCcCCCCceeEec---------cCCEEECCCCCCEEE
Confidence            577999999664332         235899999997753

>1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D

Probab=83.42  E-value=1.1  Score=39.34  Aligned_cols=84  Identities=18%  Similarity=0.149  Sum_probs=56.3

Q ss_pred             CCCCCcEEEECC--CcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCC--CCCC--------CCceEEEeCcccc
Q 019861          175 PVLGGNIIDASC--GSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES--NFPK--------DSIDAVHAGAAIH  242 (334)
Q Consensus       175 ~~~~~~vLDiGc--G~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~--~~~~--------~~fD~V~~~~vl~  242 (334)
                      ..++.+||-+|+  |.|..+..+++.. ..+|+++|.++..++.+++. ....  ...+        +.+|+|+. ..  
T Consensus       123 ~~~g~~vlV~Ga~G~vG~~~~~~a~~~-Ga~Vi~~~~~~~~~~~~~~~-ga~~~~~~~~~~~~~~~~~~~d~vid-~g--  197 (302)
T 1iz0_A          123 ARPGEKVLVQAAAGALGTAAVQVARAM-GLRVLAAASRPEKLALPLAL-GAEEAATYAEVPERAKAWGGLDLVLE-VR--  197 (302)
T ss_dssp             CCTTCEEEESSTTBHHHHHHHHHHHHT-TCEEEEEESSGGGSHHHHHT-TCSEEEEGGGHHHHHHHTTSEEEEEE-CS--
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHhc-CCCEEEECCcchhHHHHhcCceEEEE-CC--
Confidence            456889999998  3466666666653 24999999998877777642 1110  0111        46898886 32  


Q ss_pred             CCCCHHHHHHHHHHcccCCcEEEEEE
Q 019861          243 CWSSPSTGVAEISRVLRPGGVFVGTT  268 (334)
Q Consensus       243 h~~d~~~~L~~i~r~LkpgG~lii~~  268 (334)
                         .  ..++...+.|+++|+++...
T Consensus       198 ---~--~~~~~~~~~l~~~G~~v~~g  218 (302)
T 1iz0_A          198 ---G--KEVEESLGLLAHGGRLVYIG  218 (302)
T ss_dssp             ---C--TTHHHHHTTEEEEEEEEEC-
T ss_pred             ---H--HHHHHHHHhhccCCEEEEEe
Confidence               1  24788899999999988743

>3nx4_A Putative oxidoreductase; csgid, structural genomics, center for struc genomics of infectious diseases, PSI, protein structure INI; HET: MSE NAP; 1.90A {Salmonella enterica subsp} PDB: 1o89_A 1o8c_A*

Probab=83.22  E-value=2  Score=38.13  Aligned_cols=81  Identities=11%  Similarity=0.035  Sum_probs=56.7

Q ss_pred             cEEEECC--CcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcC----------CCCCCCCceEEEeCccccCCCCH
Q 019861          180 NIIDASC--GSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQE----------SNFPKDSIDAVHAGAAIHCWSSP  247 (334)
Q Consensus       180 ~vLDiGc--G~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~----------~~~~~~~fD~V~~~~vl~h~~d~  247 (334)
                      +||=+|+  |.|.++..+++.. ..+|+++|.++..++.+++.-...          ..+..+.+|+|+-.     ...+
T Consensus       149 ~VlV~Ga~G~vG~~aiqla~~~-Ga~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~~~~~d~v~d~-----~g~~  222 (324)
T 3nx4_A          149 EVVVTGASGGVGSTAVALLHKL-GYQVAAVSGRESTHGYLKSLGANRILSRDEFAESRPLEKQLWAGAIDT-----VGDK  222 (324)
T ss_dssp             CEEESSTTSHHHHHHHHHHHHT-TCCEEEEESCGGGHHHHHHHTCSEEEEGGGSSCCCSSCCCCEEEEEES-----SCHH
T ss_pred             eEEEECCCcHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHhcCCCEEEecCCHHHHHhhcCCCccEEEEC-----CCcH
Confidence            4999997  3477777777764 349999999999888887642110          11223568887654     3332


Q ss_pred             HHHHHHHHHcccCCcEEEEEE
Q 019861          248 STGVAEISRVLRPGGVFVGTT  268 (334)
Q Consensus       248 ~~~L~~i~r~LkpgG~lii~~  268 (334)
                        .+....+.|+++|+++...
T Consensus       223 --~~~~~~~~l~~~G~iv~~G  241 (324)
T 3nx4_A          223 --VLAKVLAQMNYGGCVAACG  241 (324)
T ss_dssp             --HHHHHHHTEEEEEEEEECC
T ss_pred             --HHHHHHHHHhcCCEEEEEe
Confidence              7889999999999988754

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=83.18  E-value=17  Score=36.02  Aligned_cols=83  Identities=8%  Similarity=0.127  Sum_probs=50.0

Q ss_pred             eEEEeCccccCCCCH--HHHHHHHHHcccCCcEEEEEEeccCCCCCchHHHHHHHHHhhh----hcCccCCCCHHHHHHH
Q 019861          233 DAVHAGAAIHCWSSP--STGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQ----ISGSYTFLSEREIEDL  306 (334)
Q Consensus       233 D~V~~~~vl~h~~d~--~~~L~~i~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~t~~~l~~l  306 (334)
                      =++++-.+|.+++..  .++|+.+.+ + ++|.+++.+..... ....++.+.+...+..    ......+.+.++..+.
T Consensus       219 tl~i~Egvl~Yl~~~~~~~ll~~~~~-~-~~~~~~~~e~~~~~-~~~d~f~~~m~~~~~~~g~~l~~~~~~~~~~~~~~~  295 (695)
T 2zwa_A          219 KVFVAEVSLAYMKPERSDSIIEATSK-M-ENSHFIILEQLIPK-GPFEPFSKQMLAHFKRNDSPLQSVLKYNTIESQVQR  295 (695)
T ss_dssp             EEEEEESSGGGSCHHHHHHHHHHHHT-S-SSEEEEEEEECCTT-CTTSHHHHHHHHHHHHTTCCCCGGGTCCSHHHHHHH
T ss_pred             EEEeeeeEEEEcCHHHHHHHHHHHhh-C-CCceEEEEEeecCC-CCCChHHHHHHHHHHHcCCCCCccccCCCHHHHHHH
Confidence            355666777777633  467777775 4 67777776654321 1223333333333322    2223456789999999


Q ss_pred             HHhCCCcEEEEe
Q 019861          307 CRACGLVDFKCT  318 (334)
Q Consensus       307 l~~~Gf~~v~~~  318 (334)
                      |.++||+.+...
T Consensus       296 ~~~~Gw~~v~~~  307 (695)
T 2zwa_A          296 FNKLGFAYVNVG  307 (695)
T ss_dssp             HHHTTCCEEEEE
T ss_pred             HHHCCCCCccee
Confidence            999999876644

>1twf_L ABC10-alpha, DNA-directed RNA polymerases I, II, and III 7.7 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.9.2 PDB: 1i3q_L 1i6h_L 1k83_L* 1nik_L 1nt9_L 1pqv_L 1r5u_L 1r9s_L* 1r9t_L* 1sfo_L* 1twa_L* 1twc_L* 1i50_L* 1twg_L* 1twh_L* 1wcm_L 1y1v_L 1y1w_L 1y1y_L 1y77_L* ...

Probab=82.65  E-value=0.73  Score=31.28  Aligned_cols=28  Identities=18%  Similarity=0.500  Sum_probs=21.0

Q ss_pred             CCceeCCCCCCCccccCCCCcccccccCCccccccccc
Q 019861           69 KNVLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKK  106 (334)
Q Consensus        69 ~~~l~CPiC~~~l~~~~~~~~~~~~~~~~~~~C~~C~~  106 (334)
                      ...+.|+.||.......          ....+|+.||+
T Consensus        26 ~v~Y~C~~CG~~~e~~~----------~d~irCp~CG~   53 (70)
T 1twf_L           26 TLKYICAECSSKLSLSR----------TDAVRCKDCGH   53 (70)
T ss_dssp             CCCEECSSSCCEECCCT----------TSTTCCSSSCC
T ss_pred             eEEEECCCCCCcceeCC----------CCCccCCCCCc
Confidence            45689999999755432          14579999998

>3q87_A Putative uncharacterized protein ECU08_1170; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi}

Probab=82.43  E-value=0.32  Score=37.08  Aligned_cols=26  Identities=23%  Similarity=0.496  Sum_probs=22.8

Q ss_pred             cCCcccccccccccccccCccccccc
Q 019861           95 AGSSLQCNTCKKTYSGVGTHFDMTAA  120 (334)
Q Consensus        95 ~~~~~~C~~C~~~~~~~~~~~~~~~~  120 (334)
                      ..+.+.|++||+.|+..+|+++.+..
T Consensus        96 ~EG~L~Cp~cgr~ypI~~GIPNm~~~  121 (125)
T 3q87_A           96 VEGSLRCDMCGLIYPIKGSIVETVDT  121 (125)
T ss_dssp             EEEEEEETTTCCEEEEETTEEECSSC
T ss_pred             EEEEEECCCCCCEeeccCCcccHHHh
Confidence            55789999999999999999988653

>3j21_g 50S ribosomal protein L40E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}

Probab=82.29  E-value=0.65  Score=29.35  Aligned_cols=29  Identities=14%  Similarity=0.214  Sum_probs=22.0

Q ss_pred             CCCceeCCCCCCCccccCCCCcccccccCCcccccccccccc
Q 019861           68 SKNVLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYS  109 (334)
Q Consensus        68 ~~~~l~CPiC~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~~  109 (334)
                      ......||.|+..+.             .+.+.|..||+...
T Consensus        11 ~~~k~iCpkC~a~~~-------------~gaw~CrKCG~~~l   39 (51)
T 3j21_g           11 IFKKYVCLRCGATNP-------------WGAKKCRKCGYKRL   39 (51)
T ss_dssp             SSSEEECTTTCCEEC-------------TTCSSCSSSSSCCC
T ss_pred             HhCCccCCCCCCcCC-------------CCceecCCCCCccc
Confidence            346788999999722             26899999998743

>1wii_A Hypothetical UPF0222 protein MGC4549; domain of unknown function, zinc finger, metal-binding protein, structural genomics; NMR {Mus musculus} SCOP: g.41.3.4

Probab=82.05  E-value=0.38  Score=34.03  Aligned_cols=39  Identities=13%  Similarity=0.424  Sum_probs=25.6

Q ss_pred             CceeCCCCCCCccccCCCCcccccccCCcccccccccccccc
Q 019861           70 NVLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSGV  111 (334)
Q Consensus        70 ~~l~CPiC~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~~~~  111 (334)
                      ..|.||.|++.......  + ........+.|..|+..|...
T Consensus        22 t~F~CPfCnh~~sV~vk--i-dk~~~~g~l~C~~Cg~~~~~~   60 (85)
T 1wii_A           22 TQFTCPFCNHEKSCDVK--M-DRARNTGVISCTVCLEEFQTP   60 (85)
T ss_dssp             SCCCCTTTCCSSCEEEE--E-ETTTTEEEEEESSSCCEEEEE
T ss_pred             CeEcCCCCCCCCeEEEE--E-EccCCEEEEEcccCCCeEEec
Confidence            46899999997433221  0 112245789999999888554

>4f3n_A Uncharacterized ACR, COG1565 superfamily; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.75A {Burkholderia thailandensis} PDB: 4g67_A*

Probab=81.96  E-value=1.1  Score=41.93  Aligned_cols=45  Identities=13%  Similarity=0.242  Sum_probs=33.7

Q ss_pred             CCcEEEECCCcCHHHHHHHHc----CC-CCeEEEEeCCHHHHHHHHHHHh
Q 019861          178 GGNIIDASCGSGLFSRIFAKS----GL-FSLVVALDYSENMLKQCYEFVQ  222 (334)
Q Consensus       178 ~~~vLDiGcG~G~~~~~l~~~----~~-~~~v~giD~s~~~~~~a~~~~~  222 (334)
                      ...|+|+|.|.|.++..+.+.    .+ ..+|+.||+|+...+.-++++.
T Consensus       138 ~~~ivE~GaG~GtLa~DiL~~l~~~~~~~~~y~iVE~Sp~Lr~~Q~~~L~  187 (432)
T 4f3n_A          138 TRRVMEFGAGTGKLAAGLLTALAALGVELDEYAIVDLSGELRARQRETLG  187 (432)
T ss_dssp             CCEEEEESCTTSHHHHHHHHHHHHTTCCCSEEEEECTTSSSHHHHHHHHH
T ss_pred             CCeEEEeCCCccHHHHHHHHHHHhcCCCCceEEEEEcCHHHHHHHHHHHh
Confidence            369999999999987666543    21 2379999999988777666654

>1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11

Probab=81.72  E-value=3.1  Score=37.11  Aligned_cols=44  Identities=25%  Similarity=0.298  Sum_probs=29.7

Q ss_pred             CCCCCceEEEeC--cccc---CC---------CCHHHHHHHHHHcccCCcEEEEEEec
Q 019861          227 FPKDSIDAVHAG--AAIH---CW---------SSPSTGVAEISRVLRPGGVFVGTTYI  270 (334)
Q Consensus       227 ~~~~~fD~V~~~--~vl~---h~---------~d~~~~L~~i~r~LkpgG~lii~~~~  270 (334)
                      +++++||+|++.  +...   +.         ......|++++++|+|||.+++....
T Consensus        29 l~~~svDlI~tDPPY~~~~~~~y~~~~~~~~~~~l~~~l~~~~rvLk~~G~i~i~~~d   86 (323)
T 1boo_A           29 FPEESISLVMTSPPFALQRKKEYGNLEQHEYVDWFLSFAKVVNKKLKPDGSFVVDFGG   86 (323)
T ss_dssp             SCSSCEEEEEECCCCSSSCSCSSCSCHHHHHHHHHHHHHHHHHHHEEEEEEEEEEECC
T ss_pred             CCCCCeeEEEECCCCCCCcccccCCcCHHHHHHHHHHHHHHHHHHCcCCcEEEEEECC
Confidence            446678888875  1111   11         12457889999999999999987654

>3po3_S Transcription elongation factor S-II; RNA polymerase II, mRNA, transcription, arrest, BACKTRACKING cleavage, transferase-DNA-RNA complex; HET: DNA BRU EPE PGE; 3.30A {Saccharomyces cerevisiae} PDB: 1y1v_S 1y1y_S 3gtm_S* 1enw_A

Probab=80.96  E-value=0.94  Score=36.90  Aligned_cols=41  Identities=12%  Similarity=0.283  Sum_probs=25.3

Q ss_pred             CCceeCCCCCCCccccCCC-CcccccccCCcccccccccccc
Q 019861           69 KNVLACPICYKPLTWIGDS-SLSIESAAGSSLQCNTCKKTYS  109 (334)
Q Consensus        69 ~~~l~CPiC~~~l~~~~~~-~~~~~~~~~~~~~C~~C~~~~~  109 (334)
                      ...+.||-||+........ .-+.......++.|..||+.|.
T Consensus       135 t~~~~Cp~C~~~~a~~~q~Q~rsaDE~mt~f~~C~~C~~~w~  176 (178)
T 3po3_S          135 TDRFTCGKCKEKKVSYYQLQTRSAAAPLTTFCTCEACGNRWK  176 (178)
T ss_dssp             BSSSCCSSSCCSCEECCCCCCSCTTSCCCCCEEETTTCCEEC
T ss_pred             cCCcCCCCCCCCceEEEEeecccCCCCCcEEEEcCCCCCeec
Confidence            3467899999965332211 1111223556899999998763

>4h0n_A DNMT2; SAH binding, transferase; HET: SAH; 2.71A {Spodoptera frugiperda}

Probab=80.43  E-value=1.6  Score=39.29  Aligned_cols=116  Identities=14%  Similarity=0.113  Sum_probs=72.1

Q ss_pred             CcEEEECCCcCHHHHHHHHcCCC-CeEEEEeCCHHHHHHHHHHHhcCC----C--------CCCCCceEEEeCcccc---
Q 019861          179 GNIIDASCGSGLFSRIFAKSGLF-SLVVALDYSENMLKQCYEFVQQES----N--------FPKDSIDAVHAGAAIH---  242 (334)
Q Consensus       179 ~~vLDiGcG~G~~~~~l~~~~~~-~~v~giD~s~~~~~~a~~~~~~~~----~--------~~~~~fD~V~~~~vl~---  242 (334)
                      .+++|+-||.|.+...+...|.. ..+.++|+++.+.+..+.++....    .        ++...+|+++...--.   
T Consensus         4 ~~~idLFaG~GG~~~G~~~aG~~~~~v~a~e~d~~a~~ty~~N~~~~~~~~~DI~~~~~~~~~~~~~D~l~ggpPCQ~fS   83 (333)
T 4h0n_A            4 HKILELYSGIGGMHCAWKESGLDGEIVAAVDINTVANSVYKHNFPETNLLNRNIQQLTPQVIKKWNVDTILMSPPCQPFT   83 (333)
T ss_dssp             EEEEEETCTTTHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCTTSCEECCCGGGCCHHHHHHTTCCEEEECCCCCCSE
T ss_pred             CEEEEECcCccHHHHHHHHcCCCceEEEEEeCCHHHHHHHHHhCCCCceeccccccCCHHHhccCCCCEEEecCCCcchh
Confidence            48999999999999999988742 357899999999988888765432    1        1123689998642211   


Q ss_pred             ------CCCCHH-HHHHHHHH---ccc-CCcEEEEEEeccCCCCCchHHHHHHHHHhhhhcCccCCCCHHHHHHHHHhCC
Q 019861          243 ------CWSSPS-TGVAEISR---VLR-PGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLCRACG  311 (334)
Q Consensus       243 ------h~~d~~-~~L~~i~r---~Lk-pgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~l~~ll~~~G  311 (334)
                            ...|+. ..+.++.+   .++ |  .+++.+....-    ...                 -..+.+.+.|++.|
T Consensus        84 ~ag~~~~~~d~r~~L~~~~~r~i~~~~~P--~~~vlENV~gl----~~~-----------------~~~~~i~~~l~~~G  140 (333)
T 4h0n_A           84 RNGKYLDDNDPRTNSFLYLIGILDQLDNV--DYILMENVKGF----ENS-----------------TVRNLFIDKLKECN  140 (333)
T ss_dssp             ETTEECCTTCTTSCCHHHHHHHGGGCTTC--CEEEEEECTTG----GGS-----------------HHHHHHHHHHHHTT
T ss_pred             hhhhccCCcCcccccHHHHHHHHHHhcCC--CEEEEecchhh----hhh-----------------hHHHHHHHHHHhCC
Confidence                  223333 23333333   344 5  44554544321    000                 02457888899999


Q ss_pred             CcEEEE
Q 019861          312 LVDFKC  317 (334)
Q Consensus       312 f~~v~~  317 (334)
                      +.+...
T Consensus       141 Y~v~~~  146 (333)
T 4h0n_A          141 FIYQEF  146 (333)
T ss_dssp             EEEEEE
T ss_pred             CeEEEE
Confidence            987553

>1gh9_A 8.3 kDa protein (gene MTH1184); beta+alpha complex structure, structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: g.41.6.1

Probab=80.15  E-value=0.63  Score=31.68  Aligned_cols=30  Identities=20%  Similarity=0.479  Sum_probs=21.9

Q ss_pred             ceeCCCCCCCccccCCCCcccccccCCcccccccccccccc
Q 019861           71 VLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSGV  111 (334)
Q Consensus        71 ~l~CPiC~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~~~~  111 (334)
                      .+.|| |+.......         .....+|+ ||......
T Consensus         4 vv~C~-C~~~~~~~~---------~~kT~~C~-CG~~~~~~   33 (71)
T 1gh9_A            4 IFRCD-CGRALYSRE---------GAKTRKCV-CGRTVNVK   33 (71)
T ss_dssp             EEEET-TSCCEEEET---------TCSEEEET-TTEEEECC
T ss_pred             EEECC-CCCEEEEcC---------CCcEEECC-CCCeeeec
Confidence            46799 999765543         33679999 99877554

>3ga8_A HTH-type transcriptional regulator MQSA (YGIT/B30; helix-turn-helix, Zn-binding protein, DNA-binding, transcrip transcription regulation; HET: PE4; 1.70A {Escherichia coli k-12} PDB: 3hi2_A

Probab=80.09  E-value=0.25  Score=34.44  Aligned_cols=39  Identities=15%  Similarity=0.361  Sum_probs=21.6

Q ss_pred             eeCCCCCCC-ccccCCC-Ccc--cc--cc-cCCccccccccccccc
Q 019861           72 LACPICYKP-LTWIGDS-SLS--IE--SA-AGSSLQCNTCKKTYSG  110 (334)
Q Consensus        72 l~CPiC~~~-l~~~~~~-~~~--~~--~~-~~~~~~C~~C~~~~~~  110 (334)
                      ..||+|++. +...... .+.  ..  .+ ....+.|++||-.|..
T Consensus         3 m~Cp~Cg~~~l~~~~~~~~~~~~G~~~~I~~Vp~~~C~~CGE~~~~   48 (78)
T 3ga8_A            3 MKCPVCHQGEMVSGIKDIPYTFRGRKTVLKGIHGLYCVHCEESIMN   48 (78)
T ss_dssp             CBCTTTSSSBEEEEEEEEEEEETTEEEEEEEEEEEEETTTCCEECC
T ss_pred             eECCCCCCCeeEeEEEEEEEEECCEEEEEcCceeEECCCCCCEEEC
Confidence            369999975 4221100 011  11  11 3368999999987744

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	334
d1p91a_	268	c.66.1.33 (A:) rRNA methyltransferase RlmA {Escher	2e-12
d2gh1a1	281	c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bac	5e-12
d1xxla_	234	c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus	2e-11
d1nkva_	245	c.66.1.21 (A:) Hypothetical Protein YjhP {Escheric	2e-10
d1vl5a_	231	c.66.1.41 (A:) Hypothetical protein BH2331 {Bacill	9e-10
d2i6ga1	198	c.66.1.44 (A:1-198) Putative methyltransferase Teh	3e-08
d2p7ia1	225	c.66.1.41 (A:22-246) Hypothetical protein ECA1738	5e-08
d1l3ia_	186	c.66.1.22 (A:) Precorrin-6Y methyltransferase (Cbi	1e-07
d1xvaa_	292	c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Ra	4e-07
d1jqea_	280	c.66.1.19 (A:) Histamine methyltransferase {Human	2e-06
d1g8sa_	230	c.66.1.3 (A:) Fibrillarin homologue {Archaeon Meth	2e-06
d2g72a1	263	c.66.1.15 (A:18-280) Phenylethanolamine N-methyltr	2e-06
d1ri5a_	252	c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransf	3e-06
d1yb2a1	250	c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {T	8e-06
d1nt2a_	209	c.66.1.3 (A:) Fibrillarin homologue {Archaeon Arch	1e-05
d2o57a1	282	c.66.1.18 (A:16-297) Putative sarcosine dimethylgl	4e-05
d1zx0a1	229	c.66.1.16 (A:8-236) Guanidinoacetate methyltransfe	4e-05
d1nw3a_	328	c.66.1.31 (A:) Catalytic, N-terminal domain of his	8e-05
d1o54a_	266	c.66.1.13 (A:) Hypothetical protein TM0748 {Thermo	5e-04
d1xtpa_	254	c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa	6e-04
d1y8ca_	246	c.66.1.43 (A:) Putative methyltransferase CAC2371	0.001
d2a14a1	257	c.66.1.15 (A:5-261) Indolethylamine N-methyltransf	0.001
d2avna1	246	c.66.1.41 (A:1-246) Hypothetical methyltransferase	0.002
d2nxca1	254	c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT	0.002
d2fyta1	311	c.66.1.6 (A:238-548) Protein arginine N-methyltran	0.003
d1tw3a2	253	c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransf	0.003
d1g6q1_	328	c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Ba	0.003
d1u2za_	406	c.66.1.31 (A:) Catalytic, N-terminal domain of his	0.003
d1wzna1	251	c.66.1.43 (A:1-251) Hypothetical methyltransferase	0.004

>d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]} Length = 268

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA methyltransferase RlmA
domain: rRNA methyltransferase RlmA
species: Escherichia coli [TaxId: 562]

 Score = 64.2 bits (155), Expect = 2e-12
 Identities = 38/217 (17%), Positives = 72/217 (33%), Gaps = 43/217 (19%)

Query: 72  LACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSGVGTHFDMTAASGSKDYGELMS 131
            +CP+C++PL+              +S  C    +       + ++      +      S
Sbjct: 2   FSCPLCHQPLSR-----------EKNSYICPQRHQFDMAKEGYVNLLPVQHKRSRDPGDS 50

Query: 132 PATEFFRMPFMSFIYERGWRQNFVWGGFPGPEKEF--ELMKGYLKPVLGGNIIDASCGSG 189
              E  +            R+ F+  G   P ++     ++  L       ++D  CG G
Sbjct: 51  A--EMMQ-----------ARRAFLDAGHYQPLRDAIVAQLRERL-DDKATAVLDIGCGEG 96

Query: 190 LFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES---------NFPKDSIDAVHAGAA 240
            ++  FA +        LD S+  +K   +   Q +          F   S+DA+    A
Sbjct: 97  YYTHAFADALPEITTFGLDVSKVAIKAAAKRYPQVTFCVASSHRLPFSDTSMDAIIRIYA 156

Query: 241 IHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNL 277
                       E++RV++PGG  +  T        L
Sbjct: 157 PCKA-------EELARVVKPGGWVITATPGPRHLMEL 186

>d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]} Length = 281

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: BC2162-like
domain: Methyltransferase BC2162
species: Bacillus cereus [TaxId: 1396]

 Score = 63.0 bits (152), Expect = 5e-12
 Identities = 29/177 (16%), Positives = 58/177 (32%), Gaps = 27/177 (15%)

Query: 168 LMKGYLKPVLGGNIIDASCGSGLFSRIFAK-SGLFSLVVALDYSENMLKQCYEFVQQESN 226
           L+    K     +I+D  CG G    +        S    +D  E +L +  E  +    
Sbjct: 18  LVNTVWKITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPY 77

Query: 227 F------------PKDSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFV--------- 265
                          D  D     A +   ++P T + ++   ++ GG  +         
Sbjct: 78  DSEFLEGDATEIELNDKYDIAICHAFLLHMTTPETMLQKMIHSVKKGGKIICFEPHWISN 137

Query: 266 GTTYIVDG--PFNLIPFSRLLR--QNMMQISGSYTFLSEREIEDLCRACGLVDFKCT 318
             +Y++DG      I    L +  ++  Q +G    +   +I       G+ + +C 
Sbjct: 138 MASYLLDGEKQSEFIQLGVLQKLFESDTQRNGKDGNIG-MKIPIYLSELGVKNIECR 193

>d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]} Length = 234

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein YcgJ
species: Bacillus subtilis [TaxId: 1423]

 Score = 60.4 bits (145), Expect = 2e-11
 Identities = 30/170 (17%), Positives = 60/170 (35%), Gaps = 24/170 (14%)

Query: 173 LKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES------- 225
            +      ++D   G+G  +  F+        + +D ++ M++    F Q++        
Sbjct: 14  CRA--EHRVLDIGAGAGHTALAFSPYV--QECIGVDATKEMVEVASSFAQEKGVENVRFQ 69

Query: 226 -------NFPKDSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLI 278
                   FP DS D +    A H +S     V E++RVL+  G F+    +VD      
Sbjct: 70  QGTAESLPFPDDSFDIITCRYAAHHFSDVRKAVREVARVLKQDGRFL----LVDHYAPED 125

Query: 279 PFSRLLRQNMMQIS--GSYTFLSEREIEDLCRACGLVDFKCTRNRGFVMF 326
           P       ++ ++         S  E + +  A  L      +    + +
Sbjct: 126 PVLDEFVNHLNRLRDPSHVRESSLSEWQAMFSANQLAYQDIQKWNLPIQY 175

>d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]} Length = 245

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical Protein YjhP
domain: Hypothetical Protein YjhP
species: Escherichia coli [TaxId: 562]

 Score = 58.4 bits (140), Expect = 2e-10
 Identities = 27/167 (16%), Positives = 54/167 (32%), Gaps = 20/167 (11%)

Query: 160 PGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYE 219
           P  E+++  +   L+   G  I+D   GSG     +A+    +    +D S     Q   
Sbjct: 16  PFTEEKYATLGRVLRMKPGTRILDLGSGSGEMLCTWARDHGIT-GTGIDMSSLFTAQAKR 74

Query: 220 FVQQ--------------ESNFPKDSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFV 265
             ++                    +  D      A       +     +++ L+PGG+ +
Sbjct: 75  RAEELGVSERVHFIHNDAAGYVANEKCDVAACVGATWIAGGFAGAEELLAQSLKPGGIML 134

Query: 266 GTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLCRACGL 312
               I +  +  +P +  + Q     S S  FL+   +       G 
Sbjct: 135 ----IGEPYWRQLPATEEIAQACGVSSTSD-FLTLPGLVGAFDDLGY 176

>d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]} Length = 231

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein BH2331
species: Bacillus halodurans [TaxId: 86665]

 Score = 55.8 bits (133), Expect = 9e-10
 Identities = 30/170 (17%), Positives = 59/170 (34%), Gaps = 24/170 (14%)

Query: 173 LKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKDSI 232
           LK      ++D + G G  +  FA       VVA D +E++LK    F++   +   + +
Sbjct: 13  LKG--NEEVLDVATGGGHVANAFAPFV--KKVVAFDLTEDILKVARAFIEGNGHQQVEYV 68

Query: 233 DA--------------VHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLI 278
                           V    A H + +P++ V+E  RVL+ GG  +    +VD      
Sbjct: 69  QGDAEQMPFTDERFHIVTCRIAAHHFPNPASFVSEAYRVLKKGGQLL----LVDNSAPEN 124

Query: 279 PFSRLLRQNMMQI--SGSYTFLSEREIEDLCRACGLVDFKCTRNRGFVMF 326
               +    + +      +    + +   +    G    +        +F
Sbjct: 125 DAFDVFYNYVEKERDYSHHRAWKKSDWLKMLEEAGFELEELHCFHKTFIF 174

>d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]} Length = 198

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TehB-like
domain: Putative methyltransferase TehB
species: Salmonella typhimurium [TaxId: 90371]

 Score = 51.1 bits (121), Expect = 3e-08
 Identities = 28/209 (13%), Positives = 60/209 (28%), Gaps = 29/209 (13%)

Query: 142 MSFIYERGWRQNFVWGGFPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLF 201
           M+   E  + + +   G      +       + P   G  +D  CG+G  S   A +G  
Sbjct: 1   MTVRDENYFTEKY---GLTRTHSDVLAAAKVVAP---GRTLDLGCGNGRNSLYLAANGYD 54

Query: 202 SLVVALDYSENMLKQ-----------CYEFVQQESNFPKDSIDAVHAGAAIHCWSSP--S 248
                 + +     +             + V   +       D + +   +    +    
Sbjct: 55  VTAWDKNPASMANLERIKAAEGLDNLQTDLVDLNTLTFDGEYDFILSTVVMMFLEAQTIP 114

Query: 249 TGVAEISRVLRPGGVFVGTTYIVDGPF-NLIPFSRLLRQNMMQISGSYTFLSEREIEDLC 307
             +A + R  +PGG  +    +    F   + F    ++  ++      +    ++    
Sbjct: 115 GLIANMQRCTKPGGYNLIVAAMDTPDFPCTVGFPFAFKEGELR-----RYYEGWDMLKYN 169

Query: 308 RACG-LVDFKCTRNRG---FVMFTATKPS 332
              G L       NR    F    A K +
Sbjct: 170 EDVGELHRTDENGNRIKLRFATMLARKTA 198

>d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]} Length = 225

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein ECA1738
species: Erwinia carotovora [TaxId: 554]

 Score = 50.7 bits (120), Expect = 5e-08
 Identities = 19/161 (11%), Positives = 45/161 (27%), Gaps = 18/161 (11%)

Query: 168 LMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFV------ 221
           +++ +      GN+++     G F+    +   F+ +  ++ SE  +      +      
Sbjct: 11  MVRAFTPFFRPGNLLELGSFKGDFTSRLQE--HFNDITCVEASEEAISHAQGRLKDGITY 68

Query: 222 ---QQESNFPKDSIDAVHAGAAIHCWSSPSTGVAEI-SRVLRPGGVFVGTTYIVDGPFNL 277
              + E        D +     +     P   +  I    L  GG         +     
Sbjct: 69  IHSRFEDAQLPRRYDNIVLTHVLEHIDDPVALLKRINDDWLAEGGRLFLVCPNANAVSRQ 128

Query: 278 IPFSRLLRQNMMQIS------GSYTFLSEREIEDLCRACGL 312
           I     +  +   ++      G     +   +E      GL
Sbjct: 129 IAVKMGIISHNSAVTEAEFAHGHRCTYALDTLERDASRAGL 169

>d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 186

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Precorrin-6Y methyltransferase (CbiT)
domain: Precorrin-6Y methyltransferase (CbiT)
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

 Score = 49.0 bits (116), Expect = 1e-07
 Identities = 25/146 (17%), Positives = 44/146 (30%), Gaps = 22/146 (15%)

Query: 154 FVWGGFPGPEKEF--ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSE 211
                 PGP       L+    +P      +D  CG+G  +   A       V A+D + 
Sbjct: 8   IKNPSVPGPTAMEVRCLIMCLAEPGKNDVAVDVGCGTGGVTLELAGRVRR--VYAIDRNP 65

Query: 212 NMLKQC------------YEFVQ---QESNFPKDSIDAVHAGAAIHCWSSPSTGVAEISR 256
             +                  ++    E+      ID    G +          +  I  
Sbjct: 66  EAISTTEMNLQRHGLGDNVTLMEGDAPEALCKIPDIDIAVVGGSGGELQEI---LRIIKD 122

Query: 257 VLRPGGVFVGTTYIVDGPFNLIPFSR 282
            L+PGG  + T  +++  F  +   R
Sbjct: 123 KLKPGGRIIVTAILLETKFEAMECLR 148

>d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 292

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glycine N-methyltransferase
domain: Glycine N-methyltransferase
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 48.4 bits (114), Expect = 4e-07
 Identities = 27/169 (15%), Positives = 52/169 (30%), Gaps = 32/169 (18%)

Query: 133 ATEFFRMPFMSFIYERGWRQNFVWGGFPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFS 192
           A E     +      R W Q ++        +    + G L+      ++D +CG+G+ S
Sbjct: 13  AAEGIPDQYADGEAARVW-QLYIGDTRSRTAEYKAWLLGLLRQHGCHRVLDVACGTGVDS 71

Query: 193 RIFAKSGLFSLVVALDYSENMLKQCYEFVQQ----------------------ESNFPKD 230
            +  + G    V ++D S+ MLK   +                          +      
Sbjct: 72  IMLVEEGFS--VTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDVPAGDG 129

Query: 231 SIDAVHAGAAIHCWSSPSTG-------VAEISRVLRPGGVFVGTTYIVD 272
               +  G +                 +  I+ ++RPGG+ V      D
Sbjct: 130 FDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDHRNYD 178

>d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]} Length = 280

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Histamine methyltransferase
domain: Histamine methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.5 bits (109), Expect = 2e-06
 Identities = 16/142 (11%), Positives = 34/142 (23%), Gaps = 41/142 (28%)

Query: 165 EFELMKGYLKPVLGG------------NIIDASCGSGLFSRIFAK------SGLFSLVVA 206
           E + M+ ++   L G             I+    G+G               G+      
Sbjct: 16  EHQCMQEFMDKKLPGIIGRIGDTKSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEV 75

Query: 207 LDYSENMLKQCYEFVQQESN-----------------------FPKDSIDAVHAGAAIHC 243
           ++ S   + +  E V + SN                             D +H    ++ 
Sbjct: 76  VEPSAEQIAKYKELVAKISNLENVKFAWHKETSSEYQSRMLEKKELQKWDFIHMIQMLYY 135

Query: 244 WSSPSTGVAEISRVLRPGGVFV 265
                  +     +L      +
Sbjct: 136 VKDIPATLKFFHSLLGTNAKML 157

>d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 230

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

 Score = 45.9 bits (108), Expect = 2e-06
 Identities = 13/107 (12%), Positives = 35/107 (32%), Gaps = 15/107 (14%)

Query: 172 YLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQC---------YEFVQ 222
            +K      I+     +G      A      +V A++Y+  ++++             + 
Sbjct: 71  PIKR--DSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAERENIIPIL 128

Query: 223 QESNFPKDSIDAV----HAGAAIHCWSSPSTGVAEISRVLRPGGVFV 265
            ++N P++  + V         +   +     +      L+ GG  +
Sbjct: 129 GDANKPQEYANIVEKVDVIYEDVAQPNQAEILIKNAKWFLKKGGYGM 175

>d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]} Length = 263

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Phenylethanolamine N-methyltransferase, PNMTase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.4 bits (109), Expect = 2e-06
 Identities = 32/264 (12%), Positives = 66/264 (25%), Gaps = 90/264 (34%)

Query: 135 EFFRMPFMSFIYERGWRQNFVWGGFPGPEKEF-ELMKGYLKPVLGGNIIDASCGSGLFSR 193
             +  P        G          P   +   +        V G  +ID   G  ++  
Sbjct: 21  NNYAPPRGDLCNPNGVG--------PWKLRCLAQTFAT--GEVSGRTLIDIGSGPTVYQ- 69

Query: 194 IFAKSGLFSLVVALDYSENMLKQCYEFVQQES---------------------------- 225
           + +    F  +   D+ E   ++   ++Q+E                             
Sbjct: 70  LLSACSHFEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQ 129

Query: 226 ----------------------NFPKDSIDAVHAGAAIHC----WSSPSTGVAEISRVLR 259
                                 +      DA+ +   +       +S    +  I+ +LR
Sbjct: 130 LRARVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLR 189

Query: 260 PGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLCRACGL------- 312
           PGG  +    + +  + L   +RL          +   +SE E+ +     G        
Sbjct: 190 PGGHLLLIGAL-EESWYLAGEARL----------TVVPVSEEEVREALVRSGYKVRDLRT 238

Query: 313 ------VDFKCTRNRGFVMFTATK 330
                 +       +G     A K
Sbjct: 239 YIMPAHLQTGVDDVKGVFFAWAQK 262

>d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]} Length = 252

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap (Guanine N-7) methyltransferase
domain: mRNA cap (Guanine N-7) methyltransferase
species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]

 Score = 45.3 bits (106), Expect = 3e-06
 Identities = 28/132 (21%), Positives = 45/132 (34%), Gaps = 23/132 (17%)

Query: 168 LMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQC---------- 217
           L++ Y K   G +++D  CG G     + ++G       +D +E  +             
Sbjct: 17  LIRLYTKR--GDSVLDLGCGKGGDLLKYERAG-IGEYYGVDIAEVSINDARVRARNMKRR 73

Query: 218 --YEFVQQESN----FPKDSIDAVHAGAAIHCWSSPS----TGVAEISRVLRPGGVFVGT 267
               F  Q+S           D + +  + H   S S         I+R LRPGG F+ T
Sbjct: 74  FKVFFRAQDSYGRHMDLGKEFDVISSQFSFHYAFSTSESLDIAQRNIARHLRPGGYFIMT 133

Query: 268 TYIVDGPFNLIP 279
               D       
Sbjct: 134 VPSRDVILERYK 145

>d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]} Length = 250

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein Ta0852
species: Thermoplasma acidophilum [TaxId: 2303]

 Score = 44.3 bits (104), Expect = 8e-06
 Identities = 19/108 (17%), Positives = 40/108 (37%), Gaps = 12/108 (11%)

Query: 168 LMKGYLKPVLGGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQQESN 226
           +M+  L+P  G +I++   GSG  S     +      +  ++  E+ LK+  + + +  +
Sbjct: 78  IMRCGLRP--GMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYD 135

Query: 227 FPKDSIDAVHAGAAIHCWS---------SPSTGVAEISRVLRPGGVFV 265
                         I              P   V +I+ +++PG V  
Sbjct: 136 IGNVRTSRSDIADFISDQMYDAVIADIPDPWNHVQKIASMMKPGSVAT 183

>d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 209

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

 Score = 43.2 bits (101), Expect = 1e-05
 Identities = 16/107 (14%), Positives = 32/107 (29%), Gaps = 15/107 (14%)

Query: 172 YLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESN----- 226
            L+      ++     SG      A      ++ A++YS    ++  E V++ +N     
Sbjct: 53  KLRG--DERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRERNNIIPLL 110

Query: 227 -------FPKDSIDAVHAG-AAIHCWSSPSTGVAEISRVLRPGGVFV 265
                       ++ V      I   +      A     L+  G  V
Sbjct: 111 FDASKPWKYSGIVEKVDLIYQDIAQKNQIEILKANAEFFLKEKGEVV 157

>d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]} Length = 282

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Putative sarcosine dimethylglycine methyltransferase
species: Red algae (Galdieria sulphuraria) [TaxId: 130081]

 Score = 42.5 bits (98), Expect = 4e-05
 Identities = 31/203 (15%), Positives = 58/203 (28%), Gaps = 36/203 (17%)

Query: 145 IYERGWR-QNFVWGGFPGPEKE--------------FELMKGYLKPVLGGNIIDASCGSG 189
            Y   W  ++   G +  P  +                 +            +D   G G
Sbjct: 20  FYFHVWGGEDIHVGLYKEPVDQDEIREASLRTDEWLASELAMTGVLQRQAKGLDLGAGYG 79

Query: 190 LFSRIFAKSGLFSLVVALDYSENMLKQCYEF---------------VQQESNFPKDSIDA 234
             +R   +    S +  L+ +    K+  E+                  E     +S D 
Sbjct: 80  GAARFLVRKFGVS-IDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEIPCEDNSYDF 138

Query: 235 VHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGS 294
           + +  A            E +RVL+P GV   T  + +   +      +L +  +     
Sbjct: 139 IWSQDAFLHSPDKLKVFQECARVLKPRGVMAITDPMKEDGIDKSSIQPILDRIKL----- 193

Query: 295 YTFLSEREIEDLCRACGLVDFKC 317
           +   S      L + CGLV  + 
Sbjct: 194 HDMGSLGLYRSLAKECGLVTLRT 216

>d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]} Length = 229

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Guanidinoacetate methyltransferase
domain: Guanidinoacetate methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.0 bits (97), Expect = 4e-05
 Identities = 17/159 (10%), Positives = 46/159 (28%), Gaps = 33/159 (20%)

Query: 178 GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESN----------- 226
           GG +++   G  + +    ++ +      ++ ++ + ++  ++  ++++           
Sbjct: 54  GGRVLEVGFGMAIAASKVQEAPIDE-HWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWED 112

Query: 227 ---------FPKDSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNL 277
                    F     D              +       R+L+PGGV            NL
Sbjct: 113 VAPTLPDGHFDGILYDTYPLSEETWHTHQFNFIKNHAFRLLKPGGVLTY--------CNL 164

Query: 278 IPFSRLLRQNMMQISGSYTFLSEREIEDLCRACGLVDFK 316
             +  L++     I+  +    E          G     
Sbjct: 165 TSWGELMKSKYSDITIMF----EETQVPALLEAGFRREN 199

>d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]} Length = 328

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.4 bits (96), Expect = 8e-05
 Identities = 12/121 (9%), Positives = 31/121 (25%), Gaps = 24/121 (19%)

Query: 181 IIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQ----------------- 223
            +D   G G      A +        ++ ++   K      ++                 
Sbjct: 155 FVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTL 214

Query: 224 -ESNFPKDSIDAVHAGAAIHCWSS------PSTGVAEISRVLRPGGVFVGTTYIVDGPFN 276
              +F  +      A  ++   ++          + E    ++ GG  V +       F 
Sbjct: 215 ERGDFLSEEWRERIANTSVIFVNNFAFGPEVDHQLKERFANMKEGGRIVSSKPFAPLNFR 274

Query: 277 L 277
           +
Sbjct: 275 I 275

>d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]} Length = 266

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein TM0748
species: Thermotoga maritima [TaxId: 2336]

 Score = 38.6 bits (89), Expect = 5e-04
 Identities = 28/155 (18%), Positives = 46/155 (29%), Gaps = 18/155 (11%)

Query: 124 KDYGELM--SPATEFF-RMPFMSFIYERGWRQNFVWGGFPGPEKEFELMKGYLKPVLGGN 180
           K  GE++  S   + +  +P +        R            K+   +   L    G  
Sbjct: 52  KGPGEIIRTSAGKKGYILIPSLIDEIMNMKR-----RTQIVYPKDSSFIAMMLDVKEGDR 106

Query: 181 IIDASCGSGLFSRIFAK-SGLFSLVVALDYSENMLKQCYEFVQQESNFPKDSIDA----- 234
           IID   GSG    + A+  G    V A +  E   K     + +     + +I       
Sbjct: 107 IIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISE 166

Query: 235 ----VHAGAAIHCWSSPSTGVAEISRVLRPGGVFV 265
                   A       P   + +    L+ GG F 
Sbjct: 167 GFDEKDVDALFLDVPDPWNYIDKCWEALKGGGRFA 201

>d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]} Length = 254

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810)
species: Leishmania major [TaxId: 5664]

 Score = 38.4 bits (88), Expect = 6e-04
 Identities = 17/164 (10%), Positives = 37/164 (22%), Gaps = 26/164 (15%)

Query: 174 KPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNFPKDSID 233
                   +D   G G  ++       ++    L+  ++ML++    +            
Sbjct: 90  PGHGTSRALDCGAGIGRITKNLLTKL-YATTDLLEPVKHMLEEAKRELAGMPVGKFILAS 148

Query: 234 AVHA--------------GAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIP 279
              A               A     +          + L P G          G      
Sbjct: 149 METATLPPNTYDLIVIQWTAIYLTDADFVKFFKHCQQALTPNGYIFFKENCSTGD----- 203

Query: 280 FSRLLRQNMMQISGSYTFLSEREIEDLCRACGLVDFKCTRNRGF 323
                 + ++    S    S+   + L    G+   K      +
Sbjct: 204 ------RFLVDKEDSSLTRSDIHYKRLFNESGVRVVKEAFQEEW 241

>d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]} Length = 246

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Putative methyltransferase CAC2371
species: Clostridium acetobutylicum [TaxId: 1488]

 Score = 37.7 bits (86), Expect = 0.001
 Identities = 15/133 (11%), Positives = 37/133 (27%), Gaps = 16/133 (12%)

Query: 163 EKEFELMKGYLKP--VLGGNIIDASCGSGLFSRIFAKSGLFSLVVAL-----------DY 209
           +K  + +        ++  + +D +CG+G  +         +  V L             
Sbjct: 21  KKWSDFIIEKCVENNLVFDDYLDLACGTGNLTENLCPKFKNTWAVDLSQEMLSEAENKFR 80

Query: 210 SENMLKQCYEFVQQESNFPKDSIDAVHAGAAIHCWSSPSTGVA---EISRVLRPGGVFVG 266
           S+ +  +         N  +          + +              +S  L+ GGVF+ 
Sbjct: 81  SQGLKPRLACQDISNLNINRKFDLITCCLDSTNYIIDSDDLKKYFKAVSNHLKEGGVFIF 140

Query: 267 TTYIVDGPFNLIP 279
                     ++ 
Sbjct: 141 DINSYYKLSQVLG 153

>d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]} Length = 257

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Indolethylamine N-methyltransferase, INMT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.3 bits (85), Expect = 0.001
 Identities = 26/216 (12%), Positives = 55/216 (25%), Gaps = 75/216 (34%)

Query: 178 GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESN----------- 226
           G  +ID   G  ++  + A    F  +   D+++   ++  +++++E             
Sbjct: 52  GDTLIDIGSGPTIYQ-VLAACDSFQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFA 110

Query: 227 -------------------------------------FPKDSIDAVHAGAAIHC----WS 245
                                                      D V    A+ C      
Sbjct: 111 CELEGNSGRWEEKEEKLRAAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLD 170

Query: 246 SPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIED 305
           +    +  ++ +L+PGG  V T  +    + +            +       L + E+E 
Sbjct: 171 AYRAALCNLASLLKPGGHLVTTVTLRLPSYMV----------GKREFSCV-ALEKGEVEQ 219

Query: 306 LCRACGL--VDFKCTR---------NRGFVMFTATK 330
                G        +          N G     A K
Sbjct: 220 AVLDAGFDIEQLLHSPQSYSVTNAANNGVCCIVARK 255

>d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]} Length = 246

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical methyltransferase TM1389
species: Thermotoga maritima [TaxId: 2336]

 Score = 37.1 bits (84), Expect = 0.002
 Identities = 19/110 (17%), Positives = 37/110 (33%), Gaps = 9/110 (8%)

Query: 167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESN 226
             ++ YLK      ++D   G+G +S    + G   ++V        + +          
Sbjct: 34  SFLEEYLKN--PCRVLDLGGGTGKWSLFLQERGFEVVLVDPSKEMLEVAREKGVKNVVEA 91

Query: 227 FPKDS-------IDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTY 269
             +D           +  G  +    +     +EI RVL P G+ + T  
Sbjct: 92  KAEDLPFPSGAFEAVLALGDVLSYVENKDKAFSEIRRVLVPDGLLIATVD 141

>d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]} Length = 254

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ribosomal protein L11 methyltransferase PrmA
domain: PrmA-like protein TTHA0656 (TT0836)
species: Thermus thermophilus [TaxId: 274]

 Score = 36.8 bits (84), Expect = 0.002
 Identities = 17/109 (15%), Positives = 32/109 (29%), Gaps = 13/109 (11%)

Query: 166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQ--- 222
            + +  +L+P     ++D   GSG+ +    K G     + +D    +L Q     +   
Sbjct: 111 LKALARHLRPG--DKVLDLGTGSGVLAIAAEKLGGK--ALGVDIDPMVLPQAEANAKRNG 166

Query: 223 ------QESNFPKDSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFV 265
                 + S              A       +         L PGG  +
Sbjct: 167 VRPRFLEGSLEAALPFGPFDLLVANLYAELHAALAPRYREALVPGGRAL 215

>d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]} Length = 311

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 3, PRMT3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.8 bits (84), Expect = 0.003
 Identities = 22/140 (15%), Positives = 46/140 (32%), Gaps = 26/140 (18%)

Query: 178 GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQ-----------CYEFVQQES- 225
              ++D  CG+G+ S   AK+G    V+ +D SE + +                ++ +  
Sbjct: 36  DKVVLDVGCGTGILSMFAAKAG-AKKVLGVDQSEILYQAMDIIRLNKLEDTITLIKGKIE 94

Query: 226 --NFPKDSIDAVHAGAAIHCWSSPSTG---VAEISRVLRPGGVFV---GTTYIVDGPFNL 277
             + P + +D + +    +     S     +   ++ L  GG       T  +V      
Sbjct: 95  EVHLPVEKVDVIISEWMGYFLLFESMLDSVLYAKNKYLAKGGSVYPDICTISLV-----A 149

Query: 278 IPFSRLLRQNMMQISGSYTF 297
           +         +      Y F
Sbjct: 150 VSDVNKHADRIAFWDDVYGF 169

>d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]} Length = 253

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Carminomycin 4-O-methyltransferase
species: Streptomyces peucetius [TaxId: 1950]

 Score = 36.6 bits (83), Expect = 0.003
 Identities = 21/159 (13%), Positives = 43/159 (27%), Gaps = 15/159 (9%)

Query: 178 GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSE-----------NMLKQCYEFVQQESN 226
             +++D   G G F+   A+         L+ +              L    + V+ +  
Sbjct: 81  VRHVLDVGGGKGGFAAAIARRAPHVSATVLEMAGTVDTARSYLKDEGLSDRVDVVEGDFF 140

Query: 227 FPKDSIDAVHAGAAIHCWSSPSTGVA---EISRVLRPGGVFVGTTYIVDGPFNLIPFSRL 283
            P          + +         V      +  L PGG  +          +       
Sbjct: 141 EPLPRKADAIILSFVLLNWPDHDAVRILTRCAEALEPGGRILIHERDDLHENSFNEQFTE 200

Query: 284 LRQNMMQISGSYTFLSEREIEDLCRACGLVDFKCTRNRG 322
           L   M+   G     +  + + L  + GLV  +  +   
Sbjct: 201 LDLRMLVFLGGA-LRTREKWDGLAASAGLVVEEVRQLPS 238

>d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 328

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Arginine methyltransferase, HMT1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 36.4 bits (83), Expect = 0.003
 Identities = 20/105 (19%), Positives = 37/105 (35%), Gaps = 18/105 (17%)

Query: 178 GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSE-----------NMLKQCYEFVQ---Q 223
              ++D  CG+G+ S   AK G    V+ +D S            N        ++   +
Sbjct: 39  DKIVLDVGCGTGILSMFAAKHG-AKHVIGVDMSSIIEMAKELVELNGFSDKITLLRGKLE 97

Query: 224 ESNFPKDSIDAVHA---GAAIHCWSSPSTGVAEISRVLRPGGVFV 265
           + + P   +D + +   G  +   S   T +      L  GG+  
Sbjct: 98  DVHLPFPKVDIIISEWMGYFLLYESMMDTVLYARDHYLVEGGLIF 142

>d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 406

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 36.6 bits (84), Expect = 0.003
 Identities = 13/129 (10%), Positives = 30/129 (23%), Gaps = 28/129 (21%)

Query: 173 LKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQ--------- 223
           LK   G   +D   G G      A     +L    +  ++         ++         
Sbjct: 214 LKK--GDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYG 271

Query: 224 ---------------ESNFPKDSIDAVHAGAAIHCWSSPST--GVAEISRVLRPGGVFVG 266
                          ++N   + I         +          V +I +  + G   + 
Sbjct: 272 MRLNNVEFSLKKSFVDNNRVAELIPQCDVILVNNFLFDEDLNKKVEKILQTAKVGCKIIS 331

Query: 267 TTYIVDGPF 275
              +    +
Sbjct: 332 LKSLRSLTY 340

>d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 251

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical methyltransferase PH1305
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

 Score = 35.9 bits (81), Expect = 0.004
 Identities = 26/173 (15%), Positives = 54/173 (31%), Gaps = 20/173 (11%)

Query: 159 FPGPEKEFELMKGYLKPVL---GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYS----- 210
               + E + ++   K         ++D +CG+G+ +   A+ G   + + L        
Sbjct: 20  IERVKAEIDFVEEIFKEDAKREVRRVLDLACGTGIPTLELAERGYEVVGLDLHEEMLRVA 79

Query: 211 -----ENMLKQCYEFVQQESNFPKDSIDAVHAGAAIHCWSSPS---TGVAEISRVLRPGG 262
                E  LK  +          K+  DAV    +   +          ++++  L+PGG
Sbjct: 80  RRKAKERNLKIEFLQGDVLEIAFKNEFDAVTMFFSTIMYFDEEDLRKLFSKVAEALKPGG 139

Query: 263 VFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLCRACGLVDF 315
           VF+             P     ++           +  RE+E   +       
Sbjct: 140 VFITDFPCWFYGGRDGPVVWNEQKG----EEKLVIMDWREVEPAVQKLRFKRL 188

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	334
d1p91a_	268	rRNA methyltransferase RlmA {Escherichia coli [Tax	99.92
d1vl5a_	231	Hypothetical protein BH2331 {Bacillus halodurans [	99.91
d1xxla_	234	Hypothetical protein YcgJ {Bacillus subtilis [TaxI	99.9
d1vlma_	208	Possible histamine N-methyltransferase TM1293 {The	99.87
d2o57a1	282	Putative sarcosine dimethylglycine methyltransfera	99.87
d1im8a_	225	Hypothetical protein HI0319 (YecO) {Haemophilus in	99.87
d2p7ia1	225	Hypothetical protein ECA1738 {Erwinia carotovora [	99.86
d1nkva_	245	Hypothetical Protein YjhP {Escherichia coli [TaxId	99.85
d1kpia_	291	CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}	99.81
d2ex4a1	222	Adrenal gland protein AD-003 (C9orf32) {Human (Hom	99.81
d1tw3a2	253	Carminomycin 4-O-methyltransferase {Streptomyces p	99.81
d1xtpa_	254	Hypothetical protein Lmaj004091aaa (LmjF30.0810) {	99.8
d2fk8a1	280	Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri	99.8
d1qzza2	256	Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu	99.8
d2a14a1	257	Indolethylamine N-methyltransferase, INMT {Human (	99.79
d1jqea_	280	Histamine methyltransferase {Human (Homo sapiens)	99.78
d1ve3a1	226	Hypothetical protein PH0226 {Archaeon Pyrococcus h	99.77
d1kpga_	285	CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}	99.77
d2i6ga1	198	Putative methyltransferase TehB {Salmonella typhim	99.76
d2gh1a1	281	Methyltransferase BC2162 {Bacillus cereus [TaxId:	99.76
d2avna1	246	Hypothetical methyltransferase TM1389 {Thermotoga	99.76
d1g8sa_	230	Fibrillarin homologue {Archaeon Methanococcus jann	99.73
d1y8ca_	246	Putative methyltransferase CAC2371 {Clostridium ac	99.72
d2nxca1	254	PrmA-like protein TTHA0656 (TT0836) {Thermus therm	99.71
d2bzga1	229	Thiopurine S-methyltransferase {Human (Homo sapien	99.71
d2g72a1	263	Phenylethanolamine N-methyltransferase, PNMTase {H	99.71
d1pjza_	201	Thiopurine S-methyltransferase {Pseudomonas syring	99.69
d1wzna1	251	Hypothetical methyltransferase PH1305 {Archaeon Py	99.67
d1dusa_	194	Hypothetical protein MJ0882 {Archaeon Methanococcu	99.66
d1zx0a1	229	Guanidinoacetate methyltransferase {Human (Homo sa	99.64
d1xvaa_	292	Glycine N-methyltransferase {Rat (Rattus norvegicu	99.64
d1ri5a_	252	mRNA cap (Guanine N-7) methyltransferase {Fungus (	99.64
d1o54a_	266	Hypothetical protein TM0748 {Thermotoga maritima [	99.6
d1yb2a1	250	Hypothetical protein Ta0852 {Thermoplasma acidophi	99.6
d1l3ia_	186	Precorrin-6Y methyltransferase (CbiT) {Archaeon Me	99.6
d1g8aa_	227	Fibrillarin homologue {Archaeon Pyrococcus horikos	99.59
d1i9ga_	264	Probable methyltransferase Rv2118c {Mycobacterium	99.59
d1fp1d2	244	Chalcone O-methyltransferase {Alfalfa (Medicago sa	99.57
d1nt2a_	209	Fibrillarin homologue {Archaeon Archaeoglobus fulg	99.55
d1dl5a1	213	Protein-L-isoaspartyl O-methyltransferase {Thermot	99.49
d2b25a1	324	Hypothetical protein FLJ20628 {Human (Homo sapiens	99.45
d1fp2a2	244	Isoflavone O-methyltransferase {Alfalfa (Medicago	99.43
d2fcaa1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil	99.43
d1i1na_	224	Protein-L-isoaspartyl O-methyltransferase {Human (	99.41
d1kyza2	243	Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra	99.39
d1vbfa_	224	Protein-L-isoaspartyl O-methyltransferase {Sulfolo	99.35
d1yzha1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep	99.31
d1nw3a_	328	Catalytic, N-terminal domain of histone methyltran	99.29
d1u2za_	406	Catalytic, N-terminal domain of histone methyltran	99.26
d2b3ta1	274	N5-glutamine methyltransferase, HemK {Escherichia	99.26
d1g6q1_	328	Arginine methyltransferase, HMT1 {Baker's yeast (S	99.24
d2fyta1	311	Protein arginine N-methyltransferase 3, PRMT3 {Hum	99.18
d1jg1a_	215	Protein-L-isoaspartyl O-methyltransferase {Archaeo	99.16
d1oria_	316	Protein arginine N-methyltransferase 1, PRMT1 {Rat	99.14
d1r18a_	223	Protein-L-isoaspartyl O-methyltransferase {Fruit f	99.12
d1m6ya2	192	TM0872, methyltransferase domain {Thermotoga marit	99.07
d2frna1	260	Hypothetical protein PH0793 {Pyrococcus horikoshii	99.04
d1af7a2	193	Chemotaxis receptor methyltransferase CheR, C-term	99.03
d2as0a2	324	Hypothetical protein PH1915, middle and C-terminal	98.96
d1wxxa2	318	Hypothetical protein TTHA1280, middle and C-termin	98.92
d1ws6a1	171	Methyltransferase TTHA0928 {Thermus thermophilus [	98.87
d1nv8a_	271	N5-glutamine methyltransferase, HemK {Thermotoga m	98.76
d2h00a1	250	Methyltransferase 10 domain containing protein MET	98.76
d2esra1	152	Putative methyltransferase SPy1538 {Streptococcus	98.75
d2b78a2	317	Hypothetical protein SMu776, middle and C-terminal	98.74
d1ne2a_	197	Hypothetical protein Ta1320 {Archaeon Thermoplasma	98.69
d2avda1	219	COMT domain-containing protein 1, COMTD1 {Human (H	98.68
d2cl5a1	214	Catechol O-methyltransferase, COMT {Rat (Rattus no	98.67
d2igta1	309	Putative methyltransferase Atu0340 {Agrobacterium	98.66
d1wy7a1	201	Hypothetical protein PH1948 {Archaeon Pyrococcus h	98.62
d2fpoa1	183	Methylase YhhF {Escherichia coli [TaxId: 562]}	98.61
d1uira_	312	Spermidine synthase {Thermus thermophilus [TaxId:	98.53
d2f8la1	328	Hypothetical protein Lmo1582 {Listeria monocytogen	98.44
d2ih2a1	223	DNA methylase TaqI, N-terminal domain {Thermus aqu	98.43
d1susa1	227	Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicag	98.42
d2fhpa1	182	Putative methylase EF2452 {Enterococcus faecalis [	98.4
d1inla_	295	Spermidine synthase {Thermotoga maritima [TaxId: 2	98.38
d1mjfa_	276	Putative spermidine synthetase PF0127 (SpeE) {Arch	98.35
d1xj5a_	290	Spermidine synthase {Thale cress (Arabidopsis thal	98.34
d1iy9a_	274	Spermidine synthase {Bacillus subtilis [TaxId: 142	98.34
d2b2ca1	312	Spermidine synthase {Caenorhabditis elegans [TaxId	98.33
d2o07a1	285	Spermidine synthase {Human (Homo sapiens) [TaxId:	98.32
d1jsxa_	207	Glucose-inhibited division protein B (GidB) {Esche	98.27
d1wg8a2	182	TM0872, methyltransferase domain {Thermus thermoph	98.25
d1qama_	235	rRNA adenine dimethylase {Bacillus subtilis, Ermc'	98.18
d2okca1	425	Type I restriction enzyme StySJI M protein {Bacter	98.09
d1ej0a_	180	RNA methyltransferase FtsJ {Escherichia coli [TaxI	98.05
d2ifta1	183	Putative methylase HI0767 {Haemophilus influenzae	98.04
d1xdza_	239	Glucose-inhibited division protein B (GidB) {Bacil	98.0
d2ar0a1	524	M.EcoKI {Escherichia coli [TaxId: 562]}	97.91
d2p41a1	257	An RNA cap (nucleoside-2'-O-)-methyltransferase do	97.86
d1yuba_	245	rRNA adenine dimethylase {Streptococcus pneumoniae	97.82
d1sqga2	284	Ribosomal RNA small subunit methyltransferase B, R	97.75
d1uwva2	358	rRNA (Uracil-5-)-methyltransferase RumA, catalytic	97.74
d1ixka_	313	Hypothetical methyltransferase PH1374 {Archaeon Py	97.66
d1qyra_	252	High level kasugamycin resistance protein KsgA {Es	97.6
d2jnya1	59	Uncharacterized protein Cgl1405/cg1592 {Corynebact	97.56
d1zq9a1	278	Probable dimethyladenosine transferase {Human (Hom	97.54
d2pk7a1	59	Uncharacterized protein PFL1779 {Pseudomonas fluor	97.48
d2bm8a1	232	Cephalosporin hydroxylase CmcI {Streptomyces clavu	97.47
d2dula1	375	N(2),N(2)-dimethylguanosine tRNA methyltransferase	97.45
d2hf1a1	59	Hypothetical protein CV3345 {Chromobacterium viola	97.37
d1m6ex_	359	Salicylic acid carboxyl methyltransferase (SAMT) {	97.2
d2b9ea1	293	NOL1R {Human (Homo sapiens) [TaxId: 9606]}	96.9
d1f8fa2	174	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	96.57
d1kola2	195	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	96.38
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	96.36
d1uufa2	168	Hypothetical protein YahK {Escherichia coli [TaxId	96.19
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	96.15
d1jqba2	174	Bacterial secondary alcohol dehydrogenase {Clostri	96.08
d1g60a_	256	Methyltransferase mboII {Moraxella bovis [TaxId: 4	96.08
d1i4wa_	322	Transcription factor sc-mtTFB {Baker's yeast (Sacc	95.83
d1booa_	320	m.PvuII N4 cytosine-specific DNA methyltransferase	95.7
d1h2ba2	172	Alcohol dehydrogenase {Archaeon Aeropyrum pernix [	95.69
d1jvba2	170	Alcohol dehydrogenase {Archaeon Sulfolobus solfata	95.65
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	95.63
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	95.6
d1llua2	166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	95.59
d1e3ia2	174	Alcohol dehydrogenase {Mouse (Mus musculus), class	95.29
d1yb5a2	174	Quinone oxidoreductase {Human (Homo sapiens) [TaxI	95.14
d1d1ta2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	95.1
d1eg2a_	279	m.RsrI N6 adenosine-specific DNA methyltransferase	94.98
d1p0fa2	174	Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:	94.8
d2uyoa1	297	Putative methyltransferase ML2640 {Mycobacterium l	94.35
d2akla2	38	Hypothetical protein PA0128, N-terminal domain {Ps	94.23
d2g5ca2	171	Prephenate dehydrogenase TyrA {Aquifex aeolicus [T	93.91
d1pjca1	168	L-alanine dehydrogenase {Phormidium lapideum [TaxI	93.46
d1dl6a_	58	Transcription initiation factor TFIIB, N-terminal	93.42
d1rjwa2	168	Alcohol dehydrogenase {Bacillus stearothermophilus	93.37
d1xa0a2	176	B. subtilis YhfP homologue {Bacillus stearothermop	93.11
d2jhfa2	176	Alcohol dehydrogenase {Horse (Equus caballus) [Tax	93.0
d1l7da1	183	Nicotinamide nucleotide transhydrogenase dI compon	92.86
d2oyra1	250	Hypothetical protein YhiQ {Shigella flexneri [TaxI	92.53
d1qora2	179	Quinone oxidoreductase {Escherichia coli [TaxId: 5	92.51
d1pqwa_	183	Putative enoyl reductase domain of polyketide synt	92.07
d1cdoa2	175	Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI	91.91
d2fzwa2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	91.8
d2f1ka2	165	Prephenate dehydrogenase TyrA {Synechocystis sp. p	91.48
d1v3va2	182	Leukotriene b4 12-hydroxydehydrogenase/prostagland	90.51
d1tfia_	50	Transcriptional factor SII, C-terminal domain {Hum	90.09
d2jnea1	71	Hypothetical protein YfgJ {Escherichia coli [TaxId	89.9
d1pfva3	35	Methionyl-tRNA synthetase (MetRS), Zn-domain {Esch	89.5
d1qypa_	57	RBP9 subunit of RNA polymerase II {Archaeon Thermo	89.35
d1rqga3	35	Methionyl-tRNA synthetase (MetRS), Zn-domain {Pyro	89.22
d1jj2y_	73	Ribosomal protein L37ae {Archaeon Haloarcula maris	88.86
d1zkda1	365	Hypothetical protein RPA4359 {Rhodopseudomonas pal	88.76
d1vqoz1	73	Ribosomal protein L37ae {Archaeon Haloarcula maris	88.64
d1pfta_	50	Transcription initiation factor TFIIB, N-terminal	88.57
d2py6a1	395	Methyltransferase FkbM {Methylobacillus flagellatu	86.81
d1twfi2	72	RBP9 subunit of RNA polymerase II {Baker's yeast (	86.5
d1iz0a2	171	Quinone oxidoreductase {Thermus thermophilus [TaxI	85.16
d1vj1a2	187	Putative zinc-binding alcohol dehydrogenase {Mouse	83.61
d1tt7a2	167	Hypothetical protein YhfP {Bacillus subtilis [TaxI	81.64
d2c7pa1	327	DNA methylase HhaI {Haemophilus haemolyticus [TaxI	81.56
d1wiia_	85	Hypothetical UPF0222 protein MGC4549 {Mouse (Mus m	81.34

>d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA methyltransferase RlmA
domain: rRNA methyltransferase RlmA
species: Escherichia coli [TaxId: 562]

Probab=99.92  E-value=5.2e-25  Score=195.12  Aligned_cols=170  Identities=22%  Similarity=0.310  Sum_probs=125.6

Q ss_pred             ceeCCCCCCCccccCCCCcccccccCCcccccccccccccccCcccccccCCCCCcCcccccchhhccCchhHHHHHHhH
Q 019861           71 VLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSGVGTHFDMTAASGSKDYGELMSPATEFFRMPFMSFIYERGW  150 (334)
Q Consensus        71 ~l~CPiC~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~w  150 (334)
                      .++||+|+++|....           ..++|.+||+++..+.||+++++......|......  +.+         .  .
T Consensus         1 sf~CP~C~~~L~~~~-----------~~l~C~~~h~fd~~~~Gy~~ll~~~~~~~~~~~~~~--~~~---------~--a   56 (268)
T d1p91a_           1 SFSCPLCHQPLSREK-----------NSYICPQRHQFDMAKEGYVNLLPVQHKRSRDPGDSA--EMM---------Q--A   56 (268)
T ss_dssp             CBBCTTTCCBCEEET-----------TEEECTTCCEEEBCTTSCEECSCSSSSCSCCCSSSH--HHH---------H--H
T ss_pred             CccCCCCChhhhcCC-----------CeEECCCCCccccccCceEecccccccccCCCCCCH--HHH---------H--H
Confidence            379999999887644           568999999998889999999876544433332111  000         0  1


Q ss_pred             HHhhHhcCCCCc--HHHHHHHHcccCCCCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhc-----
Q 019861          151 RQNFVWGGFPGP--EKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQ-----  223 (334)
Q Consensus       151 ~~~~~~~~~~~~--~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~-----  223 (334)
                      ++.+...++...  +.....+...+. .++.+|||||||+|.++..+++.++...++|+|+|+.+++.|+++...     
T Consensus        57 r~~~l~~g~~~~l~~~~~~~l~~~~~-~~~~~iLDiGcG~G~~~~~l~~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~  135 (268)
T d1p91a_          57 RRAFLDAGHYQPLRDAIVAQLRERLD-DKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRYPQVTFCV  135 (268)
T ss_dssp             HHHHHTTTTTHHHHHHHHHHHHHHSC-TTCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHCTTSEEEE
T ss_pred             HHHHHHcCchHHHHHHHHHHHHHhcC-CCCCEEEEeCCCCcHHHHHHHHHCCCCEEEEecchHhhhhhhhccccccccee
Confidence            233333333221  222334444443 457899999999999999999998888999999999999999986542     


Q ss_pred             ----CCCCCCCCceEEEeCccccCCCCHHHHHHHHHHcccCCcEEEEEEeccC
Q 019861          224 ----ESNFPKDSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVD  272 (334)
Q Consensus       224 ----~~~~~~~~fD~V~~~~vl~h~~d~~~~L~~i~r~LkpgG~lii~~~~~~  272 (334)
                          ..++++++||+|++.++++|       ++++.|+|||||++++.+|+.+
T Consensus       136 ~d~~~l~~~~~sfD~v~~~~~~~~-------~~e~~rvLkpgG~l~~~~p~~~  181 (268)
T d1p91a_         136 ASSHRLPFSDTSMDAIIRIYAPCK-------AEELARVVKPGGWVITATPGPR  181 (268)
T ss_dssp             CCTTSCSBCTTCEEEEEEESCCCC-------HHHHHHHEEEEEEEEEEEECTT
T ss_pred             eehhhccCCCCCEEEEeecCCHHH-------HHHHHHHhCCCcEEEEEeeCCc
Confidence                23678999999999999887       6789999999999999999764

>d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein BH2331
species: Bacillus halodurans [TaxId: 86665]

Probab=99.91  E-value=6.4e-24  Score=183.50  Aligned_cols=145  Identities=18%  Similarity=0.207  Sum_probs=117.8

Q ss_pred             HHHcccCCCCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcC--------------CCCCCCCce
Q 019861          168 LMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQE--------------SNFPKDSID  233 (334)
Q Consensus       168 ~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~--------------~~~~~~~fD  233 (334)
                      .+++.++..++.+|||||||+|.++..+++.+.  +|+|+|+|+.+++.|+++....              .++++++||
T Consensus         6 ~ll~~~~l~~~~rVLDiGcG~G~~~~~l~~~~~--~v~gvD~s~~~i~~A~~~~~~~~~~~i~~~~~d~~~l~~~~~~fD   83 (231)
T d1vl5a_           6 KLMQIAALKGNEEVLDVATGGGHVANAFAPFVK--KVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQMPFTDERFH   83 (231)
T ss_dssp             HHHHHHTCCSCCEEEEETCTTCHHHHHHGGGSS--EEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC-CCCSCTTCEE
T ss_pred             HHHHhcCCCCcCEEEEecccCcHHHHHHHHhCC--EEEEEECCHHHHhhhhhcccccccccccccccccccccccccccc
Confidence            455566777789999999999999999999986  9999999999999999876432              257789999


Q ss_pred             EEEeCccccCCCCHHHHHHHHHHcccCCcEEEEEEeccCCCCCchHHHHHHHHHhh--hhcCccCCCCHHHHHHHHHhCC
Q 019861          234 AVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMM--QISGSYTFLSEREIEDLCRACG  311 (334)
Q Consensus       234 ~V~~~~vl~h~~d~~~~L~~i~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~t~~~l~~ll~~~G  311 (334)
                      +|++.+++||++|+..+|++++++|||||++++.++.....    +........+.  ....|.+.++.+++.++++++|
T Consensus        84 ~v~~~~~l~~~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aG  159 (231)
T d1vl5a_          84 IVTCRIAAHHFPNPASFVSEAYRVLKKGGQLLLVDNSAPEN----DAFDVFYNYVEKERDYSHHRAWKKSDWLKMLEEAG  159 (231)
T ss_dssp             EEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEEEBCSS----HHHHHHHHHHHHHHCTTCCCCCBHHHHHHHHHHHT
T ss_pred             cccccccccccCCHHHHHHHHHHhcCCCcEEEEEeCCCCCC----HHHHHHHHHHHhhcccCcccCCCHHHHHHHHHHCC
Confidence            99999999999999999999999999999999988876432    22222222211  1244778899999999999999


Q ss_pred             CcEEEEe
Q 019861          312 LVDFKCT  318 (334)
Q Consensus       312 f~~v~~~  318 (334)
                      |++++..
T Consensus       160 f~~~~~~  166 (231)
T d1vl5a_         160 FELEELH  166 (231)
T ss_dssp             CEEEEEE
T ss_pred             CEEEEEE
Confidence            9987644

>d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein YcgJ
species: Bacillus subtilis [TaxId: 1423]

Probab=99.90  E-value=3.3e-23  Score=179.69  Aligned_cols=146  Identities=21%  Similarity=0.240  Sum_probs=119.9

Q ss_pred             HHHHHcccCCCCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcC--------------CCCCCCC
Q 019861          166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQE--------------SNFPKDS  231 (334)
Q Consensus       166 ~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~--------------~~~~~~~  231 (334)
                      .+.+.+.+...++.+|||||||+|.++..+++.+.  +|+|+|+|+.|++.|+++....              .++++++
T Consensus         5 ~~~l~~~~~~~~~~rILDiGcGtG~~~~~la~~~~--~v~gvD~S~~~l~~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~   82 (234)
T d1xxla_           5 LGLMIKTAECRAEHRVLDIGAGAGHTALAFSPYVQ--ECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAESLPFPDDS   82 (234)
T ss_dssp             HHHHHHHHTCCTTCEEEEESCTTSHHHHHHGGGSS--EEEEEESCHHHHHHHHHHHHHHTCCSEEEEECBTTBCCSCTTC
T ss_pred             HHHHHHHhCCCCCCEEEEeCCcCcHHHHHHHHhCC--eEEEEeCChhhhhhhhhhhcccccccccccccccccccccccc
Confidence            45677788888899999999999999999999876  9999999999999999875431              2578999


Q ss_pred             ceEEEeCccccCCCCHHHHHHHHHHcccCCcEEEEEEeccCCCCCchHHHHHHHHHhh--hhcCccCCCCHHHHHHHHHh
Q 019861          232 IDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMM--QISGSYTFLSEREIEDLCRA  309 (334)
Q Consensus       232 fD~V~~~~vl~h~~d~~~~L~~i~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~t~~~l~~ll~~  309 (334)
                      ||+|++.++++|++|+..+|+++.++|||||++++.+......    +....+...+.  ....|.+.++..++..+++.
T Consensus        83 fD~v~~~~~l~~~~d~~~~l~~~~r~LkpgG~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (234)
T d1xxla_          83 FDIITCRYAAHHFSDVRKAVREVARVLKQDGRFLLVDHYAPED----PVLDEFVNHLNRLRDPSHVRESSLSEWQAMFSA  158 (234)
T ss_dssp             EEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEECBCSS----HHHHHHHHHHHHHHCTTCCCCCBHHHHHHHHHH
T ss_pred             cceeeeeceeecccCHHHHHHHHHHeeCCCcEEEEEEcCCCCC----HHHHHHHHHHHhhCCCcccccCCHHHHHHHHHH
Confidence            9999999999999999999999999999999999988765432    33222222211  23457788899999999999


Q ss_pred             CCCcEEEE
Q 019861          310 CGLVDFKC  317 (334)
Q Consensus       310 ~Gf~~v~~  317 (334)
                      +||.+.+.
T Consensus       159 ~gf~~~~~  166 (234)
T d1xxla_         159 NQLAYQDI  166 (234)
T ss_dssp             TTEEEEEE
T ss_pred             CCCceeEE
Confidence            99977653

>d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Possible histamine N-methyltransferase TM1293
species: Thermotoga maritima [TaxId: 2336]

Probab=99.87  E-value=9.5e-22  Score=167.13  Aligned_cols=132  Identities=19%  Similarity=0.254  Sum_probs=103.6

Q ss_pred             CCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHh-------cCCCCCCCCceEEEeCccccCCCCHHHH
Q 019861          178 GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQ-------QESNFPKDSIDAVHAGAAIHCWSSPSTG  250 (334)
Q Consensus       178 ~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~-------~~~~~~~~~fD~V~~~~vl~h~~d~~~~  250 (334)
                      +.+|||||||+|.++..+.      +++|+|+|+.+++.++++-.       ...++++++||+|++.++|||++|+..+
T Consensus        37 ~~~vLDiGcG~G~~~~~~~------~~~giD~s~~~~~~a~~~~~~~~~~d~~~l~~~~~~fD~I~~~~~l~h~~d~~~~  110 (208)
T d1vlma_          37 EGRGVEIGVGTGRFAVPLK------IKIGVEPSERMAEIARKRGVFVLKGTAENLPLKDESFDFALMVTTICFVDDPERA  110 (208)
T ss_dssp             SSCEEEETCTTSTTHHHHT------CCEEEESCHHHHHHHHHTTCEEEECBTTBCCSCTTCEEEEEEESCGGGSSCHHHH
T ss_pred             CCeEEEECCCCcccccccc------eEEEEeCChhhcccccccccccccccccccccccccccccccccccccccccccc
Confidence            5689999999999988773      56899999999999997521       1236778999999999999999999999


Q ss_pred             HHHHHHcccCCcEEEEEEeccCCCCCchHHHHHHHHHhhhhcCccCCCCHHHHHHHHHhCCCcEEEEe
Q 019861          251 VAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLCRACGLVDFKCT  318 (334)
Q Consensus       251 L~~i~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~l~~ll~~~Gf~~v~~~  318 (334)
                      |++++++|+|||.+++.+++.+..   ................+.++++.+++.++|+++||++++..
T Consensus       111 l~~~~~~L~pgG~l~i~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~s~~~l~~~l~~~Gf~~i~v~  175 (208)
T d1vlma_         111 LKEAYRILKKGGYLIVGIVDRESF---LGREYEKNKEKSVFYKNARFFSTEELMDLMRKAGFEEFKVV  175 (208)
T ss_dssp             HHHHHHHEEEEEEEEEEEECSSSH---HHHHHHHTTTC-CCSTTCCCCCHHHHHHHHHHTTCEEEEEE
T ss_pred             hhhhhhcCCCCceEEEEecCCcch---hHHhhhhccccccccccccCCCHHHHHHHHHHcCCeEEEEE
Confidence            999999999999999999986531   11100111111123456778999999999999999888743

>d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Putative sarcosine dimethylglycine methyltransferase
species: Red algae (Galdieria sulphuraria) [TaxId: 130081]

Probab=99.87  E-value=2.7e-21  Score=172.20  Aligned_cols=146  Identities=17%  Similarity=0.129  Sum_probs=114.3

Q ss_pred             HHHHcccCCCCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcC---------------CCCCCCC
Q 019861          167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQE---------------SNFPKDS  231 (334)
Q Consensus       167 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~---------------~~~~~~~  231 (334)
                      +.+.......++.+|||||||+|.++..+++.. ..+|+|+|+|+.+++.|+++....               .++++++
T Consensus        57 ~~l~~~~~l~~~~~vLDiGcG~G~~~~~la~~~-~~~v~gvD~s~~~i~~a~~~~~~~gl~~~v~~~~~d~~~l~~~~~s  135 (282)
T d2o57a1          57 SELAMTGVLQRQAKGLDLGAGYGGAARFLVRKF-GVSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEIPCEDNS  135 (282)
T ss_dssp             HHHHHTTCCCTTCEEEEETCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTSCSSCTTC
T ss_pred             HHHHHhcCCCCCCEEEEeCCCCcHHHhhhhccC-CcEEEEEeccchhhhhhhcccccccccccccccccccccccccccc
Confidence            444455566778999999999999999998863 249999999999999999875421               2577899


Q ss_pred             ceEEEeCccccCCCCHHHHHHHHHHcccCCcEEEEEEeccCCCCCchHHHHHHHHHhhhhcCccCCCCHHHHHHHHHhCC
Q 019861          232 IDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLCRACG  311 (334)
Q Consensus       232 fD~V~~~~vl~h~~d~~~~L~~i~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~l~~ll~~~G  311 (334)
                      ||+|++..+++|++|+..+|++++++|||||++++.++............. +....    ......+.+++.++++++|
T Consensus       136 fD~V~~~~~l~h~~d~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~-~~~~~----~~~~~~s~~~~~~~l~~~G  210 (282)
T d2o57a1         136 YDFIWSQDAFLHSPDKLKVFQECARVLKPRGVMAITDPMKEDGIDKSSIQP-ILDRI----KLHDMGSLGLYRSLAKECG  210 (282)
T ss_dssp             EEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEEEECTTCCGGGGHH-HHHHH----TCSSCCCHHHHHHHHHHTT
T ss_pred             cchhhccchhhhccCHHHHHHHHHHhcCCCcEEEEEEeecCCCCchhHHHH-HHHHh----ccCCCCCHHHHHHHHHHcC
Confidence            999999999999999999999999999999999999887754432222211 11111    1234568999999999999


Q ss_pred             CcEEEEe
Q 019861          312 LVDFKCT  318 (334)
Q Consensus       312 f~~v~~~  318 (334)
                      |+++...
T Consensus       211 f~~i~~~  217 (282)
T d2o57a1         211 LVTLRTF  217 (282)
T ss_dssp             EEEEEEE
T ss_pred             CceEEEE
Confidence            9887754

>d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein HI0319 (YecO)
domain: Hypothetical protein HI0319 (YecO)
species: Haemophilus influenzae [TaxId: 727]

Probab=99.87  E-value=6.2e-21  Score=164.21  Aligned_cols=154  Identities=14%  Similarity=0.129  Sum_probs=117.0

Q ss_pred             CCCcEEEECCCcCHHHHHHHHc--CCCCeEEEEeCCHHHHHHHHHHHhcCC-------------CCCCCCceEEEeCccc
Q 019861          177 LGGNIIDASCGSGLFSRIFAKS--GLFSLVVALDYSENMLKQCYEFVQQES-------------NFPKDSIDAVHAGAAI  241 (334)
Q Consensus       177 ~~~~vLDiGcG~G~~~~~l~~~--~~~~~v~giD~s~~~~~~a~~~~~~~~-------------~~~~~~fD~V~~~~vl  241 (334)
                      ++.+|||+|||+|..+..+++.  .+..+|+|+|+|+.|++.|+++.....             +++...+|+|++..++
T Consensus        39 ~~~~vLDlGCGtG~~~~~l~~~~~~~~~~v~giD~S~~ml~~A~~~~~~~~~~~~~~~~~~d~~~~~~~~~d~i~~~~~l  118 (225)
T d1im8a_          39 ADSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEIKNASMVILNFTL  118 (225)
T ss_dssp             TTCEEEEESCTTCHHHHHHHHTCCCSSCEEEEECSCHHHHHHHHHHHHTSCCSSCEEEECSCTTTCCCCSEEEEEEESCG
T ss_pred             CCCEEEEeccchhhHHHHHHHhhcCCCCceEEeCCCHHHHHHHHHHhHhhcccchhhhccchhhccccccceeeEEeeec
Confidence            4789999999999999999875  356799999999999999999865432             4566789999999999


Q ss_pred             cCCC--CHHHHHHHHHHcccCCcEEEEEEeccCCCCCchHHHHHHHHHhhh---h------------cCccCCCCHHHHH
Q 019861          242 HCWS--SPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQ---I------------SGSYTFLSEREIE  304 (334)
Q Consensus       242 ~h~~--d~~~~L~~i~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~---~------------~~~~~~~t~~~l~  304 (334)
                      +|++  |+..+|++++++|||||.+++.++..................+..   .            ......++.+++.
T Consensus       119 ~~~~~~d~~~~l~~i~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~  198 (225)
T d1im8a_         119 QFLPPEDRIALLTKIYEGLNPNGVLVLSEKFRFEDTKINHLLIDLHHQFKRANGYSELEVSQKRTALENVMRTDSIETHK  198 (225)
T ss_dssp             GGSCGGGHHHHHHHHHHHEEEEEEEEEEEECCCSSHHHHHHHHHHHHHHHHHTTGGGSTTHHHHHHHHHHCCCCCHHHHH
T ss_pred             cccChhhHHHHHHHHHHhCCCCceeecccccccccchhhhHHHHHHHHHHHHcCCCHHHHHHHHHHhhcccCCCCHHHHH
Confidence            9986  778999999999999999999988765432222222111111100   0            0123457999999


Q ss_pred             HHHHhCCCcEEEEe-ecCcEEEEEEEc
Q 019861          305 DLCRACGLVDFKCT-RNRGFVMFTATK  330 (334)
Q Consensus       305 ~ll~~~Gf~~v~~~-~~g~~~~~~a~K  330 (334)
                      ++|+++||+.++.+ ....+..++|+|
T Consensus       199 ~~L~~aGF~~v~~~~~~~~f~~~~a~k  225 (225)
T d1im8a_         199 VRLKNVGFSQVELWFQCFNFGSMIAVK  225 (225)
T ss_dssp             HHHHHHTCSEEEEEEEETTEEEEEEEC
T ss_pred             HHHHHcCCCceEEeeeeCceEEEEEEC
Confidence            99999999999864 445677888877

>d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein ECA1738
species: Erwinia carotovora [TaxId: 554]

Probab=99.86  E-value=3.3e-21  Score=165.96  Aligned_cols=136  Identities=12%  Similarity=0.041  Sum_probs=107.8

Q ss_pred             CCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCC---------CCCCCCceEEEeCccccCCCCH
Q 019861          177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES---------NFPKDSIDAVHAGAAIHCWSSP  247 (334)
Q Consensus       177 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~---------~~~~~~fD~V~~~~vl~h~~d~  247 (334)
                      ++++|||||||+|.++..+++.+.  +|+|+|+|+.+++.|+++.....         ...+++||+|++.++|||++||
T Consensus        20 ~~~~VLDiGcG~G~~~~~l~~~g~--~v~giD~s~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~fD~I~~~~vleh~~d~   97 (225)
T d2p7ia1          20 RPGNLLELGSFKGDFTSRLQEHFN--DITCVEASEEAISHAQGRLKDGITYIHSRFEDAQLPRRYDNIVLTHVLEHIDDP   97 (225)
T ss_dssp             CSSCEEEESCTTSHHHHHHTTTCS--CEEEEESCHHHHHHHHHHSCSCEEEEESCGGGCCCSSCEEEEEEESCGGGCSSH
T ss_pred             CCCcEEEEeCCCcHHHHHHHHcCC--eEEEEeCcHHHhhhhhcccccccccccccccccccccccccccccceeEecCCH
Confidence            467999999999999999999886  89999999999999998754321         2236789999999999999999


Q ss_pred             HHHHHHHH-HcccCCcEEEEEEeccCCCCCchHHHHHHHH---------HhhhhcCccCCCCHHHHHHHHHhCCCcEEEE
Q 019861          248 STGVAEIS-RVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQ---------NMMQISGSYTFLSEREIEDLCRACGLVDFKC  317 (334)
Q Consensus       248 ~~~L~~i~-r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~t~~~l~~ll~~~Gf~~v~~  317 (334)
                      ..+|.+++ ++|+|||.+++.+|+....   .........         ......+|.+.++.++++++++++||++++.
T Consensus        98 ~~~l~~i~~~~Lk~gG~l~i~~pn~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~l~~~l~~~Gf~i~~~  174 (225)
T d2p7ia1          98 VALLKRINDDWLAEGGRLFLVCPNANAV---SRQIAVKMGIISHNSAVTEAEFAHGHRCTYALDTLERDASRAGLQVTYR  174 (225)
T ss_dssp             HHHHHHHHHTTEEEEEEEEEEEECTTCH---HHHHHHHTTSSSSTTCCCHHHHHTTCCCCCCHHHHHHHHHHTTCEEEEE
T ss_pred             HHHHHHHHHHhcCCCceEEEEeCCcccH---HHHHHHHhhhhhhhhhcCccccceeeeeccCHHHHHHHHHHCCCEEEEE
Confidence            99999998 7899999999999986532   111000000         0011234788999999999999999998773

>d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical Protein YjhP
domain: Hypothetical Protein YjhP
species: Escherichia coli [TaxId: 562]

Probab=99.85  E-value=8.8e-21  Score=165.35  Aligned_cols=152  Identities=15%  Similarity=0.122  Sum_probs=120.9

Q ss_pred             CcHHHHHHHHcccCCCCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCC--------------C
Q 019861          161 GPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES--------------N  226 (334)
Q Consensus       161 ~~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~--------------~  226 (334)
                      ...+..+.+.+.+...++.+|||||||+|.++..+++... .+++|+|+|+.+++.|+++....+              .
T Consensus        17 ~~~~~~~~l~~~~~l~pg~~VLDiGCG~G~~~~~la~~~~-~~v~GvD~s~~~~~~ar~~~~~~gl~~~v~~~~~d~~~~   95 (245)
T d1nkva_          17 FTEEKYATLGRVLRMKPGTRILDLGSGSGEMLCTWARDHG-ITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGY   95 (245)
T ss_dssp             CCHHHHHHHHHHTCCCTTCEEEEETCTTCHHHHHHHHHTC-CEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTTC
T ss_pred             CCHHHHHHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHhcC-CEEEEEecccchhhHHHHHHHHhhccccchhhhhHHhhc
Confidence            3455667788888888899999999999999999988752 599999999999999998754332              2


Q ss_pred             CCCCCceEEEeCccccCCCCHHHHHHHHHHcccCCcEEEEEEeccCCCCCchHHHHHHHHHhhhhcCccCCCCHHHHHHH
Q 019861          227 FPKDSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDL  306 (334)
Q Consensus       227 ~~~~~fD~V~~~~vl~h~~d~~~~L~~i~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~l~~l  306 (334)
                      +++++||+|++..+++|++|+..+|++++++|||||++++.++..........    ..... .......+.+..++..+
T Consensus        96 ~~~~~fD~v~~~~~~~~~~d~~~~l~~~~r~LkPGG~l~i~~~~~~~~~~~~~----~~~~~-~~~~~~~~~~~~~~~~~  170 (245)
T d1nkva_          96 VANEKCDVAACVGATWIAGGFAGAEELLAQSLKPGGIMLIGEPYWRQLPATEE----IAQAC-GVSSTSDFLTLPGLVGA  170 (245)
T ss_dssp             CCSSCEEEEEEESCGGGTSSSHHHHHHHTTSEEEEEEEEEEEEEETTCCSSHH----HHHTT-TCSCGGGSCCHHHHHHH
T ss_pred             cccCceeEEEEEehhhccCCHHHHHHHHHHHcCcCcEEEEEeccccCCCChHH----HHHHh-ccCCCcccCCHHHHHHH
Confidence            56789999999999999999999999999999999999999987654322221    11111 12234457799999999


Q ss_pred             HHhCCCcEEEEe
Q 019861          307 CRACGLVDFKCT  318 (334)
Q Consensus       307 l~~~Gf~~v~~~  318 (334)
                      ++++||+++...
T Consensus       171 ~~~aG~~~v~~~  182 (245)
T d1nkva_         171 FDDLGYDVVEMV  182 (245)
T ss_dssp             HHTTTBCCCEEE
T ss_pred             HHHcCCEEEEEE
Confidence            999999887644

>d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA2
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.81  E-value=3e-19  Score=158.83  Aligned_cols=155  Identities=14%  Similarity=0.100  Sum_probs=118.5

Q ss_pred             HHHHHcccCCCCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCC------------CCCCCCce
Q 019861          166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES------------NFPKDSID  233 (334)
Q Consensus       166 ~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~------------~~~~~~fD  233 (334)
                      .+.+.+.+...+|.+|||||||.|.++..+++.. .++++|+++|+.+++.++++....+            ++.+++||
T Consensus        50 ~~~~~~~l~l~~G~~VLDiGCG~G~~~~~~a~~~-g~~v~git~s~~q~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~fD  128 (291)
T d1kpia_          50 RKLALDKLNLEPGMTLLDIGCGWGSTMRHAVAEY-DVNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWEEFDEPVD  128 (291)
T ss_dssp             HHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHHSCCSSCEEEEECCGGGCCCCCS
T ss_pred             HHHHHHhcCCCCCCEEEEecCcchHHHHHHHHhc-CcceeeccchHHHHHHHHHHHHhhccchhhhhhhhcccccccccc
Confidence            4677788888899999999999999999988765 3599999999999999998876432            35578999


Q ss_pred             EEEeCccccCCCCH---------HHHHHHHHHcccCCcEEEEEEeccCCCCC--------chHHHHHHHHHhhh-hcCcc
Q 019861          234 AVHAGAAIHCWSSP---------STGVAEISRVLRPGGVFVGTTYIVDGPFN--------LIPFSRLLRQNMMQ-ISGSY  295 (334)
Q Consensus       234 ~V~~~~vl~h~~d~---------~~~L~~i~r~LkpgG~lii~~~~~~~~~~--------~~~~~~~~~~~~~~-~~~~~  295 (334)
                      .|++..++||+.++         ..+++++.++|||||++++.+........        ...... ...++.. ..+..
T Consensus       129 ~i~sie~~eH~~~~~~~~~~~~~~~~f~~i~~~LkpgG~~~l~~i~~~~~~~~~~~~~~~p~~~~~-~~~fi~kyiFpgg  207 (291)
T d1kpia_         129 RIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHTITIPDKEEAQELGLTSPMSLLR-FIKFILTEIFPGG  207 (291)
T ss_dssp             EEEEESCGGGTTCCSSCCSTTHHHHHHHHHHHTSCTTCEEEEEEEECCCHHHHHHHTCCCCHHHHH-HHHHHHHHTCTTC
T ss_pred             eEeechhHHhcchhhhhhHHHHHHHHHHHHHHhCCCCCceEEEEEeccCcchhhhccCCCchhhcc-cchHHHHHhcCCC
Confidence            99999999999874         68999999999999999998887532100        001111 1111111 12244


Q ss_pred             CCCCHHHHHHHHHhCCCcEEEEeecCc
Q 019861          296 TFLSEREIEDLCRACGLVDFKCTRNRG  322 (334)
Q Consensus       296 ~~~t~~~l~~ll~~~Gf~~v~~~~~g~  322 (334)
                      ...+..++..+++++||++.+....+.
T Consensus       208 ~lps~~~~~~~~e~~gl~v~~~~~~~~  234 (291)
T d1kpia_         208 RLPRISQVDYYSSNAGWKVERYHRIGA  234 (291)
T ss_dssp             CCCCHHHHHHHHHHHTCEEEEEEECGG
T ss_pred             CCCCHHHHHhhhcccccccceeeeccc
Confidence            567899999999999999988766554

>d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Adrenal gland protein AD-003 (C9orf32)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.81  E-value=4.8e-20  Score=158.27  Aligned_cols=133  Identities=17%  Similarity=0.157  Sum_probs=105.8

Q ss_pred             CCCCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcC--------------CCCCCCCceEEEeCc
Q 019861          174 KPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQE--------------SNFPKDSIDAVHAGA  239 (334)
Q Consensus       174 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~--------------~~~~~~~fD~V~~~~  239 (334)
                      ...++.+|||||||+|.++..++..+. .+|+|+|+|+.|++.|++++...              .++++++||+|++.+
T Consensus        57 ~~~~~~~vLDiGcG~G~~~~~l~~~~~-~~v~~vD~s~~~l~~ak~~~~~~~~~~~~f~~~d~~~~~~~~~~fD~I~~~~  135 (222)
T d2ex4a1          57 NKTGTSCALDCGAGIGRITKRLLLPLF-REVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDFTPEPDSYDVIWIQW  135 (222)
T ss_dssp             -CCCCSEEEEETCTTTHHHHHTTTTTC-SEEEEEESCHHHHHHHHHHTGGGGGGEEEEEECCGGGCCCCSSCEEEEEEES
T ss_pred             CCCCCCEEEEeccCCCHhhHHHHHhcC-CEEEEeecCHHHhhcccccccccccccccccccccccccccccccccccccc
Confidence            344567999999999999998876653 48999999999999999876532              146688999999999


Q ss_pred             cccCCCCHH--HHHHHHHHcccCCcEEEEEEeccCCCCCchHHHHHHHHHhhhhcCccCCCCHHHHHHHHHhCCCcEEEE
Q 019861          240 AIHCWSSPS--TGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLCRACGLVDFKC  317 (334)
Q Consensus       240 vl~h~~d~~--~~L~~i~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~l~~ll~~~Gf~~v~~  317 (334)
                      +++|++++.  .+|++++++|+|||.+++.++........            ....+...++.+++.++++++||++++.
T Consensus       136 ~l~h~~~~~~~~~l~~i~~~Lk~~G~~~i~~~~~~~~~~~------------~~~~~~~~~~~~~~~~l~~~aGf~ii~~  203 (222)
T d2ex4a1         136 VIGHLTDQHLAEFLRRCKGSLRPNGIIVIKDNMAQEGVIL------------DDVDSSVCRDLDVVRRIICSAGLSLLAE  203 (222)
T ss_dssp             CGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEBSSSEEE------------ETTTTEEEEBHHHHHHHHHHTTCCEEEE
T ss_pred             ccccchhhhhhhHHHHHHHhcCCcceEEEEEccccccccc------------ccCCceeeCCHHHHHHHHHHcCCEEEEE
Confidence            999999874  79999999999999999998876432111            0112344568999999999999999875


Q ss_pred             ee
Q 019861          318 TR  319 (334)
Q Consensus       318 ~~  319 (334)
                      ..
T Consensus       204 ~~  205 (222)
T d2ex4a1         204 ER  205 (222)
T ss_dssp             EE
T ss_pred             EE
Confidence            43

>d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Carminomycin 4-O-methyltransferase
species: Streptomyces peucetius [TaxId: 1950]

Probab=99.81  E-value=4e-19  Score=155.48  Aligned_cols=163  Identities=13%  Similarity=0.117  Sum_probs=116.6

Q ss_pred             HHHHcccCCCCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCC-------------CCCCCCce
Q 019861          167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES-------------NFPKDSID  233 (334)
Q Consensus       167 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~-------------~~~~~~fD  233 (334)
                      +.+...+.....++|||||||+|.++..+++.++...++++|+ +.+++.++++.....             .....+||
T Consensus        70 ~~~~~~~d~~~~~~VLDvGcG~G~~~~~la~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~rv~~~~~D~~~~~~~~~D  148 (253)
T d1tw3a2          70 DAPAAAYDWTNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEM-AGTVDTARSYLKDEGLSDRVDVVEGDFFEPLPRKAD  148 (253)
T ss_dssp             HHHHHHSCCTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-TTHHHHHHHHHHHTTCTTTEEEEECCTTSCCSSCEE
T ss_pred             HHHHhhcCCccCCEEEEeCCCCCHHHHHHHHhcceeEEEEccC-HHHHHHHHHHHHHhhcccchhhccccchhhcccchh
Confidence            4555566666678999999999999999999999889999998 678888888765432             11235799


Q ss_pred             EEEeCccccCCCCHH--HHHHHHHHcccCCcEEEEEEeccCCCCCchHHHHHHHHHhhhhcCccCCCCHHHHHHHHHhCC
Q 019861          234 AVHAGAAIHCWSSPS--TGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLCRACG  311 (334)
Q Consensus       234 ~V~~~~vl~h~~d~~--~~L~~i~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~l~~ll~~~G  311 (334)
                      +|++.++|||++++.  .+|++++++|||||++++.+...............+........ ....+|.++++++++++|
T Consensus       149 ~v~~~~vlh~~~d~~~~~~L~~~~~~LkPGG~l~i~e~~~~~~~~~~~~~~~~dl~~~~~~-~g~~rt~~e~~~ll~~AG  227 (253)
T d1tw3a2         149 AIILSFVLLNWPDHDAVRILTRCAEALEPGGRILIHERDDLHENSFNEQFTELDLRMLVFL-GGALRTREKWDGLAASAG  227 (253)
T ss_dssp             EEEEESCGGGSCHHHHHHHHHHHHHTEEEEEEEEEEECCBCGGGCCSHHHHHHHHHHHHHH-SCCCCBHHHHHHHHHHTT
T ss_pred             heeeccccccCCchhhHHHHHHHHHhcCCCcEEEEEeccCCCCCcchhHHHHhhHHHHhhC-CCcCCCHHHHHHHHHHCC
Confidence            999999999998774  78999999999999999988755322222222222211111111 234569999999999999


Q ss_pred             CcEEEEeec-----CcEEEEEEEcC
Q 019861          312 LVDFKCTRN-----RGFVMFTATKP  331 (334)
Q Consensus       312 f~~v~~~~~-----g~~~~~~a~K~  331 (334)
                      |+++++...     .....+++.+|
T Consensus       228 f~~~~v~~~~~p~~~~~~~li~~~P  252 (253)
T d1tw3a2         228 LVVEEVRQLPSPTIPYDLSLLVLAP  252 (253)
T ss_dssp             EEEEEEEEEECSSSSCEEEEEEEEE
T ss_pred             CeEEEEEECCCCCCCccEEEEEEec
Confidence            998875432     22344555554

>d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810)
species: Leishmania major [TaxId: 5664]

Probab=99.80  E-value=1.8e-19  Score=157.75  Aligned_cols=139  Identities=14%  Similarity=0.098  Sum_probs=108.5

Q ss_pred             HHHcccCCCCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCC------------CCCCCCceEE
Q 019861          168 LMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES------------NFPKDSIDAV  235 (334)
Q Consensus       168 ~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~------------~~~~~~fD~V  235 (334)
                      .+++.+...+..+|||+|||+|.++..++..+. ..|+++|+++.|++.|++++....            ++++++||+|
T Consensus        84 ~fl~~l~~~~~~~vLD~GcG~G~~t~~ll~~~~-~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~d~~~~~~~~~~fD~I  162 (254)
T d1xtpa_          84 NFIASLPGHGTSRALDCGAGIGRITKNLLTKLY-ATTDLLEPVKHMLEEAKRELAGMPVGKFILASMETATLPPNTYDLI  162 (254)
T ss_dssp             HHHHTSTTCCCSEEEEETCTTTHHHHHTHHHHC-SEEEEEESCHHHHHHHHHHTTTSSEEEEEESCGGGCCCCSSCEEEE
T ss_pred             HHHhhCCCCCCCeEEEecccCChhhHHHHhhcC-ceEEEEcCCHHHHHhhhccccccccceeEEccccccccCCCccceE
Confidence            444555666778999999999999988776542 389999999999999998865432            4567899999


Q ss_pred             EeCccccCCCCHH--HHHHHHHHcccCCcEEEEEEeccCCCCCchHHHHHHHHHhhhhcCccCCCCHHHHHHHHHhCCCc
Q 019861          236 HAGAAIHCWSSPS--TGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLCRACGLV  313 (334)
Q Consensus       236 ~~~~vl~h~~d~~--~~L~~i~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~l~~ll~~~Gf~  313 (334)
                      ++.++++|++|+.  .+|++++++|+|||.+++.++.........           ....+..+++.+.++++++++||+
T Consensus       163 ~~~~vl~hl~d~d~~~~l~~~~~~LkpgG~iii~e~~~~~~~~~~-----------d~~d~~~~rs~~~~~~l~~~aGf~  231 (254)
T d1xtpa_         163 VIQWTAIYLTDADFVKFFKHCQQALTPNGYIFFKENCSTGDRFLV-----------DKEDSSLTRSDIHYKRLFNESGVR  231 (254)
T ss_dssp             EEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEBC--CCEEE-----------ETTTTEEEBCHHHHHHHHHHHTCC
T ss_pred             EeeccccccchhhhHHHHHHHHHhcCCCcEEEEEecCCCCCccee-----------cccCCceeCCHHHHHHHHHHcCCE
Confidence            9999999999875  789999999999999999887654221110           011133456899999999999999


Q ss_pred             EEEEe
Q 019861          314 DFKCT  318 (334)
Q Consensus       314 ~v~~~  318 (334)
                      +++..
T Consensus       232 ii~~~  236 (254)
T d1xtpa_         232 VVKEA  236 (254)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            98854

>d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Methoxy mycolic acid synthase 4, Mma4
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.80  E-value=4.1e-19  Score=157.36  Aligned_cols=155  Identities=13%  Similarity=0.107  Sum_probs=115.9

Q ss_pred             HHHHHcccCCCCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCC------------CCCCCCce
Q 019861          166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES------------NFPKDSID  233 (334)
Q Consensus       166 ~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~------------~~~~~~fD  233 (334)
                      .+.+.+.+...++.+|||||||.|.++..+++.. .++|+|+|+|+.+++.|+++.....            ...+++||
T Consensus        41 ~~~~~~~l~l~~g~~VLDiGCG~G~~a~~~a~~~-g~~v~gi~ls~~q~~~a~~~~~~~~l~~~~~~~~~d~~~~~~~fD  119 (280)
T d2fk8a1          41 VDLNLDKLDLKPGMTLLDIGCGWGTTMRRAVERF-DVNVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWEDFAEPVD  119 (280)
T ss_dssp             HHHHHTTSCCCTTCEEEEESCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGGCCCCCS
T ss_pred             HHHHHHHcCCCCCCEEEEecCCchHHHHHHHHhC-ceeEEEecchHHHHHHHHHHHHhhccccchhhhhhhhhhhccchh
Confidence            4577788888899999999999999999988774 2499999999999999999876543            12357899


Q ss_pred             EEEeCccccCCCCH--HHHHHHHHHcccCCcEEEEEEeccCCCCCch----H-H--HHHHHHHhhhh-cCccCCCCHHHH
Q 019861          234 AVHAGAAIHCWSSP--STGVAEISRVLRPGGVFVGTTYIVDGPFNLI----P-F--SRLLRQNMMQI-SGSYTFLSEREI  303 (334)
Q Consensus       234 ~V~~~~vl~h~~d~--~~~L~~i~r~LkpgG~lii~~~~~~~~~~~~----~-~--~~~~~~~~~~~-~~~~~~~t~~~l  303 (334)
                      .|++..++||+.++  ..++++++++|||||++++.+..........    . .  ......++..+ .+.....+.+++
T Consensus       120 ~i~si~~~eh~~~~~~~~~f~~i~~~LkpgG~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~dfI~kyifPgg~lPS~~~l  199 (280)
T d2fk8a1         120 RIVSIEAFEHFGHENYDDFFKRCFNIMPADGRMTVQSSVSYHPYEMAARGKKLSFETARFIKFIVTEIFPGGRLPSTEMM  199 (280)
T ss_dssp             EEEEESCGGGTCGGGHHHHHHHHHHHSCTTCEEEEEEEECCCHHHHHTTCHHHHHHHHHHHHHHHHHTSTTCCCCCHHHH
T ss_pred             hhhHhhHHHHhhhhhHHHHHHHHHhccCCCceEEEEEeeccCcchhhhcccccccccccccchhhhhccCCCcccchHhh
Confidence            99999999999765  7899999999999999999876543211000    0 0  00111111111 223356789999


Q ss_pred             HHHHHhCCCcEEEEeecC
Q 019861          304 EDLCRACGLVDFKCTRNR  321 (334)
Q Consensus       304 ~~ll~~~Gf~~v~~~~~g  321 (334)
                      .++++++||++.+....|
T Consensus       200 ~~~~e~aGf~v~~~~~~~  217 (280)
T d2fk8a1         200 VEHGEKAGFTVPEPLSLR  217 (280)
T ss_dssp             HHHHHHTTCBCCCCEECH
T ss_pred             hhhHHhhccccceeeecc
Confidence            999999999988766544

>d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Aclacinomycin-10-hydroxylase RdmB
species: Streptomyces purpurascens [TaxId: 1924]

Probab=99.80  E-value=7.4e-19  Score=154.00  Aligned_cols=151  Identities=15%  Similarity=0.093  Sum_probs=110.0

Q ss_pred             HHHHcccCCCCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCC--------------CCCCCCc
Q 019861          167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES--------------NFPKDSI  232 (334)
Q Consensus       167 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~--------------~~~~~~f  232 (334)
                      ..+.+.++.....+|||||||+|.++..+++++|..+++++|+ +.+++.+++++....              +. ...|
T Consensus        71 ~~~~~~~d~~~~~~vlDvG~G~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~~~~~~~~~~ri~~~~~d~~~~~-p~~~  148 (256)
T d1qzza2          71 EAPADAYDWSAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVEL-AGPAERARRRFADAGLADRVTVAEGDFFKPL-PVTA  148 (256)
T ss_dssp             HHHHHTSCCTTCCEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTSCC-SCCE
T ss_pred             HHHHhcCCCccCCEEEEECCCCCHHHHHHHHhhcCcEEEEecC-hHHHHHHHHHHhhcCCcceeeeeeeeccccc-cccc
Confidence            3444555555567999999999999999999999899999997 788888888765432              22 3469


Q ss_pred             eEEEeCccccCCCCHH--HHHHHHHHcccCCcEEEEEEeccCCCCCchHHHHHHHH-HhhhhcCccCCCCHHHHHHHHHh
Q 019861          233 DAVHAGAAIHCWSSPS--TGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQ-NMMQISGSYTFLSEREIEDLCRA  309 (334)
Q Consensus       233 D~V~~~~vl~h~~d~~--~~L~~i~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~t~~~l~~ll~~  309 (334)
                      |+|++.++|||+++..  .+|++++++|||||+++|.+..........+....... .+.... ....+|.++|++++++
T Consensus       149 D~v~~~~vLh~~~d~~~~~lL~~i~~~LkpgG~llI~d~~~~~~~~~~~~~~~~~d~~ml~~~-~g~~rt~~e~~~ll~~  227 (256)
T d1qzza2         149 DVVLLSFVLLNWSDEDALTILRGCVRALEPGGRLLVLDRADVEGDGADRFFSTLLDLRMLTFM-GGRVRTRDEVVDLAGS  227 (256)
T ss_dssp             EEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEECCH-------HHHHHHHHHHHHHHH-SCCCCCHHHHHHHHHT
T ss_pred             hhhhccccccccCcHHHHHHHHHHHhhcCCcceeEEEEeccCCCCcccHHHHHHHHHHHHhhC-CCccCCHHHHHHHHHH
Confidence            9999999999998764  67999999999999999988754322222232222211 111111 3355799999999999


Q ss_pred             CCCcEEEEeec
Q 019861          310 CGLVDFKCTRN  320 (334)
Q Consensus       310 ~Gf~~v~~~~~  320 (334)
                      +||++++....
T Consensus       228 AGf~~~~~~~~  238 (256)
T d1qzza2         228 AGLALASERTS  238 (256)
T ss_dssp             TTEEEEEEEEE
T ss_pred             CCCceeEEEEe
Confidence            99999987654

>d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Indolethylamine N-methyltransferase, INMT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.79  E-value=9.6e-20  Score=159.41  Aligned_cols=130  Identities=18%  Similarity=0.258  Sum_probs=102.8

Q ss_pred             CCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCC------------------------------
Q 019861          176 VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES------------------------------  225 (334)
Q Consensus       176 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~------------------------------  225 (334)
                      .++.+|||||||+|.++..++..+ ..+|+|+|+|+.+++.|++++....                              
T Consensus        50 ~~g~~vLDlGcG~G~~~~~~~~~~-~~~v~giD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  128 (257)
T d2a14a1          50 LQGDTLIDIGSGPTIYQVLAACDS-FQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKLR  128 (257)
T ss_dssp             CCEEEEEESSCTTCCGGGTTGGGT-EEEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCHhHHHHhccc-cCcEEEecCCHHHHHHHHHHHhhccccchhhhHHHHHHHhccccchHHHHHHHHh
Confidence            457799999999998887777665 3479999999999999998754321                              


Q ss_pred             ------------------CCCCCCceEEEeCccccCCC----CHHHHHHHHHHcccCCcEEEEEEeccCCCCCchHHHHH
Q 019861          226 ------------------NFPKDSIDAVHAGAAIHCWS----SPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRL  283 (334)
Q Consensus       226 ------------------~~~~~~fD~V~~~~vl~h~~----d~~~~L~~i~r~LkpgG~lii~~~~~~~~~~~~~~~~~  283 (334)
                                        ++++++||+|++.++|||+.    ++..+++++.++|||||.+++.++........      
T Consensus       129 ~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~~l~~~~~~~~~~~~~l~~i~~~LkpGG~li~~~~~~~~~~~~------  202 (257)
T d2a14a1         129 AAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVTTVTLRLPSYMV------  202 (257)
T ss_dssp             HHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESSCCEEEE------
T ss_pred             hhhhcccccccccccccccccCCcccEEeehhhHHHhcccHHHHHHHHHHHHhccCCCcEEEEEEeccccccee------
Confidence                              35678999999999999996    45689999999999999999998875432100      


Q ss_pred             HHHHhhhhcCccCCCCHHHHHHHHHhCCCcEEEE
Q 019861          284 LRQNMMQISGSYTFLSEREIEDLCRACGLVDFKC  317 (334)
Q Consensus       284 ~~~~~~~~~~~~~~~t~~~l~~ll~~~Gf~~v~~  317 (334)
                           .....+..+++.++++++|+++||++++.
T Consensus       203 -----~~~~~~~~~~~~~~~~~~l~~aGf~v~~~  231 (257)
T d2a14a1         203 -----GKREFSCVALEKGEVEQAVLDAGFDIEQL  231 (257)
T ss_dssp             -----TTEEEECCCCCHHHHHHHHHHTTEEEEEE
T ss_pred             -----ccccccccCCCHHHHHHHHHHCCCEEEEE
Confidence                 01122456789999999999999998775

>d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Histamine methyltransferase
domain: Histamine methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.78  E-value=9.4e-19  Score=155.29  Aligned_cols=141  Identities=9%  Similarity=0.003  Sum_probs=106.0

Q ss_pred             CCCCCCcEEEECCCcCHHHHHHHHc----CC--CCeEEEEeCCHHHHHHHHHHHhcCC----------------------
Q 019861          174 KPVLGGNIIDASCGSGLFSRIFAKS----GL--FSLVVALDYSENMLKQCYEFVQQES----------------------  225 (334)
Q Consensus       174 ~~~~~~~vLDiGcG~G~~~~~l~~~----~~--~~~v~giD~s~~~~~~a~~~~~~~~----------------------  225 (334)
                      ...+..+|||||||+|.++..++..    ++  ...++|+|+|+.|++.+++++....                      
T Consensus        37 ~~~~~~~VLDiGcG~G~~~~~ll~~l~~~~~~~~~~~~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  116 (280)
T d1jqea_          37 DTKSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKISNLENVKFAWHKETSSEYQSRML  116 (280)
T ss_dssp             TTCSEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECCCHHHHHHHHHHHTTCCSCTTEEEEEECSCHHHHHHHHT
T ss_pred             cCCCCCeEEEEcCCCCHHHHHHHHHhhhhccCCceEEEEEeCcHHHHHHHHHHHhhccccccccccchhhhhhhhcchhc
Confidence            3334458999999999987776553    22  2468999999999999998865422                      


Q ss_pred             -CCCCCCceEEEeCccccCCCCHHHHHHHHHHcccCCcEEEEEEeccCCCCCchHHHHHHHHHhhhhcCccCCCCHHHHH
Q 019861          226 -NFPKDSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIE  304 (334)
Q Consensus       226 -~~~~~~fD~V~~~~vl~h~~d~~~~L~~i~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~l~  304 (334)
                       +.++++||+|++.++|||++|+..+|++++++|+|||.+++..++...  ........++..+ ....+..+++.+++.
T Consensus       117 ~~~~~~~fD~I~~~~~l~~~~d~~~~l~~l~~~LkpgG~l~i~~~~~~~--~~~~l~~~~~~~~-~~~~~~~~~~~~~~~  193 (280)
T d1jqea_         117 EKKELQKWDFIHMIQMLYYVKDIPATLKFFHSLLGTNAKMLIIVVSGSS--GWDKLWKKYGSRF-PQDDLCQYITSDDLT  193 (280)
T ss_dssp             TSSSCCCEEEEEEESCGGGCSCHHHHHHHHHHTEEEEEEEEEEEECTTS--HHHHHHHHHGGGS-CCCTTSCCCCHHHHH
T ss_pred             ccCCCCceeEEEEccceecCCCHHHHHHHHHhhCCCCCEEEEEEecCcc--hHHHHHHHHHHhc-CCCcccccCCHHHHH
Confidence             345789999999999999999999999999999999999999887542  1111111222111 123456788999999


Q ss_pred             HHHHhCCCcEEEE
Q 019861          305 DLCRACGLVDFKC  317 (334)
Q Consensus       305 ~ll~~~Gf~~v~~  317 (334)
                      ++|++.||+.+..
T Consensus       194 ~~L~~~G~~~~~~  206 (280)
T d1jqea_         194 QMLDNLGLKYECY  206 (280)
T ss_dssp             HHHHHHTCCEEEE
T ss_pred             HHHHHCCCceEEE
Confidence            9999999986553

>d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical protein PH0226
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.77  E-value=1e-18  Score=149.51  Aligned_cols=100  Identities=29%  Similarity=0.495  Sum_probs=85.8

Q ss_pred             HHHcccCCCCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcC-------------CCCCCCCceE
Q 019861          168 LMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQE-------------SNFPKDSIDA  234 (334)
Q Consensus       168 ~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~-------------~~~~~~~fD~  234 (334)
                      .+.++++  +..+|||||||+|.++..+++.+.  +++|+|+|+.|++.|+++....             .++++++||+
T Consensus        30 ~~~~~l~--~~~~ILDiGcG~G~~~~~la~~~~--~v~giD~S~~~i~~ak~~~~~~~~~~~~~~~d~~~l~~~~~~fD~  105 (226)
T d1ve3a1          30 LLMKYMK--KRGKVLDLACGVGGFSFLLEDYGF--EVVGVDISEDMIRKAREYAKSRESNVEFIVGDARKLSFEDKTFDY  105 (226)
T ss_dssp             HHHHSCC--SCCEEEEETCTTSHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTTCCCEEEECCTTSCCSCTTCEEE
T ss_pred             HHHHhcC--CCCEEEEECCCcchhhhhHhhhhc--ccccccccccchhhhhhhhccccccccccccccccccccCcCceE
Confidence            4445554  367999999999999999999876  9999999999999999876432             2567899999


Q ss_pred             EEeCccccCCC--CHHHHHHHHHHcccCCcEEEEEEecc
Q 019861          235 VHAGAAIHCWS--SPSTGVAEISRVLRPGGVFVGTTYIV  271 (334)
Q Consensus       235 V~~~~vl~h~~--d~~~~L~~i~r~LkpgG~lii~~~~~  271 (334)
                      |++..+++|++  |+..+|+++.++|||||++++..++.
T Consensus       106 I~~~~~l~~~~~~d~~~~l~~i~~~LkpgG~lii~~~~~  144 (226)
T d1ve3a1         106 VIFIDSIVHFEPLELNQVFKEVRRVLKPSGKFIMYFTDL  144 (226)
T ss_dssp             EEEESCGGGCCHHHHHHHHHHHHHHEEEEEEEEEEEECH
T ss_pred             EEEecchhhCChhHHHHHHHHHHHHcCcCcEEEEEEcCc
Confidence            99999999997  56789999999999999999988764

>d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA1
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.77  E-value=1.3e-17  Score=147.76  Aligned_cols=156  Identities=16%  Similarity=0.106  Sum_probs=117.1

Q ss_pred             HHHHHHcccCCCCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCC------------CCCCCCc
Q 019861          165 EFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES------------NFPKDSI  232 (334)
Q Consensus       165 ~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~------------~~~~~~f  232 (334)
                      ..+.+.+.+...+|.+|||||||.|.++..+++.. .++|+|+++|+..++.|+++....+            ...+++|
T Consensus        50 k~~~~~~~l~l~~G~~VLDiGCG~G~~a~~~a~~~-g~~v~git~s~~Q~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~f  128 (285)
T d1kpga_          50 KIDLALGKLGLQPGMTLLDVGCGWGATMMRAVEKY-DVNVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQFDEPV  128 (285)
T ss_dssp             HHHHHHTTTTCCTTCEEEEETCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGGCCCCC
T ss_pred             HHHHHHHHcCCCCCCEEEEecCcchHHHHHHHhcC-CcceEEEeccHHHHHHHHHHHHhhhhhhhhHHHHhhhhcccccc
Confidence            34677888889999999999999999999888875 4699999999999999999876543            1225789


Q ss_pred             eEEEeCccccCCCC--HHHHHHHHHHcccCCcEEEEEEeccCCCC-------CchHHHHHHHHHhhhh-cCccCCCCHHH
Q 019861          233 DAVHAGAAIHCWSS--PSTGVAEISRVLRPGGVFVGTTYIVDGPF-------NLIPFSRLLRQNMMQI-SGSYTFLSERE  302 (334)
Q Consensus       233 D~V~~~~vl~h~~d--~~~~L~~i~r~LkpgG~lii~~~~~~~~~-------~~~~~~~~~~~~~~~~-~~~~~~~t~~~  302 (334)
                      |.|++..++||+.+  ...+++++.++|||||++++.+.......       ...........++..+ .+.....+..+
T Consensus       129 D~i~si~~~eh~~~~~~~~~~~~~~r~LkpgG~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~fi~kyiFpgg~lPsl~~  208 (285)
T d1kpga_         129 DRIVSIGAFEHFGHERYDAFFSLAHRLLPADGVMLLHTITGLHPKEIHERGLPMSFTFARFLKFIVTEIFPGGRLPSIPM  208 (285)
T ss_dssp             SEEEEESCGGGTCTTTHHHHHHHHHHHSCTTCEEEEEEEEECCHHHHTTTTCSCHHHHHHHHHHHHHHTSTTCCCCCHHH
T ss_pred             cceeeehhhhhcCchhHHHHHHHHHhhcCCCCcEEEEEEeccCchhhccccCCcchhhhchhhHHHHHhccCCCCCChhh
Confidence            99999999999964  47999999999999999999887642110       0001111111112111 22345678999


Q ss_pred             HHHHHHhCCCcEEEEeecC
Q 019861          303 IEDLCRACGLVDFKCTRNR  321 (334)
Q Consensus       303 l~~ll~~~Gf~~v~~~~~g  321 (334)
                      +.++++++||++.+....+
T Consensus       209 ~~~~~e~agf~v~~~~~~~  227 (285)
T d1kpga_         209 VQECASANGFTVTRVQSLQ  227 (285)
T ss_dssp             HHHHHHTTTCEEEEEEECH
T ss_pred             HHHHHHHhchhhcccccch
Confidence            9999999999998876554

>d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TehB-like
domain: Putative methyltransferase TehB
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.76  E-value=7.6e-18  Score=141.71  Aligned_cols=124  Identities=20%  Similarity=0.213  Sum_probs=94.6

Q ss_pred             CCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCC-------------CCCCCCceEEEeCcccc
Q 019861          176 VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES-------------NFPKDSIDAVHAGAAIH  242 (334)
Q Consensus       176 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~-------------~~~~~~fD~V~~~~vl~  242 (334)
                      ..+++|||||||+|..+..+++.+.  +|+|+|+|+.+++.++++.....             ..++++||+|++..+++
T Consensus        29 ~~~grvLDiGcG~G~~~~~la~~g~--~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~fD~I~~~~~~~  106 (198)
T d2i6ga1          29 VAPGRTLDLGCGNGRNSLYLAANGY--DVTAWDKNPASMANLERIKAAEGLDNLQTDLVDLNTLTFDGEYDFILSTVVMM  106 (198)
T ss_dssp             SCSCEEEEETCTTSHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTTCTTEEEEECCTTTCCCCCCEEEEEEESCGG
T ss_pred             CCCCcEEEECCCCCHHHHHHHHHhh--hhccccCcHHHHHHHHHHhhhccccchhhhheecccccccccccEEEEeeeee
Confidence            3456999999999999999999987  99999999999999987755321             13468999999999999


Q ss_pred             CCCCH--HHHHHHHHHcccCCcEEEEEEeccCCCCCchHHHHHHHHHhhhhcCccCCCCHHHHHHHHHhCCCcEEE
Q 019861          243 CWSSP--STGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLCRACGLVDFK  316 (334)
Q Consensus       243 h~~d~--~~~L~~i~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~l~~ll~~~Gf~~v~  316 (334)
                      |++++  ..+|+++.++|+|||++++.+......   .+          ........++..++.+++  .||+++.
T Consensus       107 ~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~---~~----------~~~~~~~~~~~~el~~~~--~~~~i~~  167 (198)
T d2i6ga1         107 FLEAQTIPGLIANMQRCTKPGGYNLIVAAMDTPD---FP----------CTVGFPFAFKEGELRRYY--EGWDMLK  167 (198)
T ss_dssp             GSCTTHHHHHHHHHHHTEEEEEEEEEEEEBC----------------------CCCCBCTTHHHHHT--TTSEEEE
T ss_pred             cCCHHHHHHHHHHHHHHcCCCcEEEEEEecCCcc---CC----------CCCCCCCccCHHHHHHHh--CCCeEEE
Confidence            99865  479999999999999999987764211   00          001133456677788777  5787664

>d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: BC2162-like
domain: Methyltransferase BC2162
species: Bacillus cereus [TaxId: 1396]

Probab=99.76  E-value=7.2e-18  Score=149.68  Aligned_cols=147  Identities=16%  Similarity=0.145  Sum_probs=105.1

Q ss_pred             CCCCCCcEEEECCCcCHHHHHHHHcCC-CCeEEEEeCCHHHHHHHHHHHhcCC-------------CCCCCCceEEEeCc
Q 019861          174 KPVLGGNIIDASCGSGLFSRIFAKSGL-FSLVVALDYSENMLKQCYEFVQQES-------------NFPKDSIDAVHAGA  239 (334)
Q Consensus       174 ~~~~~~~vLDiGcG~G~~~~~l~~~~~-~~~v~giD~s~~~~~~a~~~~~~~~-------------~~~~~~fD~V~~~~  239 (334)
                      ...++.+|||||||+|.++..+++..+ ..+|+|+|+|+.+++.|+++.....             ++ +++||+|++.+
T Consensus        24 ~~~~~~~ILDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~f~~~d~~~~~~-~~~fD~v~~~~  102 (281)
T d2gh1a1          24 KITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPYDSEFLEGDATEIEL-NDKYDIAICHA  102 (281)
T ss_dssp             CCCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEECCHHHHHHHHHHHHSSSSEEEEEESCTTTCCC-SSCEEEEEEES
T ss_pred             ccCCcCEEEEecCcCCHHHHHHHHhCCCCCEEEEEecchhHhhhhhcccccccccccccccccccccc-cCCceEEEEeh
Confidence            445678999999999999999988754 3589999999999999998866432             23 45799999999


Q ss_pred             cccCCCCHHHHHHHHHHcccCCcEEEEEEeccCC--------CCCchHH--HHHHHHHhhhh--cCccCCCCHHHHHHHH
Q 019861          240 AIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDG--------PFNLIPF--SRLLRQNMMQI--SGSYTFLSEREIEDLC  307 (334)
Q Consensus       240 vl~h~~d~~~~L~~i~r~LkpgG~lii~~~~~~~--------~~~~~~~--~~~~~~~~~~~--~~~~~~~t~~~l~~ll  307 (334)
                      +++|++||..+|++++++|||||.+++.++....        .......  +..+...+...  .......-...+..++
T Consensus       103 ~l~~~~d~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~l  182 (281)
T d2gh1a1         103 FLLHMTTPETMLQKMIHSVKKGGKIICFEPHWISNMASYLLDGEKQSEFIQLGVLQKLFESDTQRNGKDGNIGMKIPIYL  182 (281)
T ss_dssp             CGGGCSSHHHHHHHHHHTEEEEEEEEEEECCHHHHHTSEEETTSCHHHHCCHHHHHHHHHHHHHTTCCCTTGGGTHHHHH
T ss_pred             hhhcCCCHHHHHHHHHHHcCcCcEEEEEECCccccchhhccCchhhhhhhhHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence            9999999999999999999999999999976310        0000000  11111111111  0111112235688899


Q ss_pred             HhCCCcEEEEeecC
Q 019861          308 RACGLVDFKCTRNR  321 (334)
Q Consensus       308 ~~~Gf~~v~~~~~g  321 (334)
                      +++||+.++.....
T Consensus       183 ~eaGf~~i~~~~~~  196 (281)
T d2gh1a1         183 SELGVKNIECRVSD  196 (281)
T ss_dssp             HHTTCEEEEEEECC
T ss_pred             HHcCCeEEEEEEec
Confidence            99999998866544

>d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical methyltransferase TM1389
species: Thermotoga maritima [TaxId: 2336]

Probab=99.76  E-value=1.3e-18  Score=150.72  Aligned_cols=93  Identities=27%  Similarity=0.373  Sum_probs=83.2

Q ss_pred             CCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhc--------CCCCCCCCceEEEeC-ccccCCCCH
Q 019861          177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQ--------ESNFPKDSIDAVHAG-AAIHCWSSP  247 (334)
Q Consensus       177 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~--------~~~~~~~~fD~V~~~-~vl~h~~d~  247 (334)
                      ++.+|||||||+|.++..+++.+.  +|+|+|+|+.|++.|+++...        ..++++++||+|++. .++||++|+
T Consensus        42 ~~~~vLDiGcG~G~~~~~l~~~~~--~v~giD~s~~~l~~a~~~~~~~~~~~~~~~l~~~~~~fD~ii~~~~~~~~~~d~  119 (246)
T d2avna1          42 NPCRVLDLGGGTGKWSLFLQERGF--EVVLVDPSKEMLEVAREKGVKNVVEAKAEDLPFPSGAFEAVLALGDVLSYVENK  119 (246)
T ss_dssp             SCCEEEEETCTTCHHHHHHHTTTC--EEEEEESCHHHHHHHHHHTCSCEEECCTTSCCSCTTCEEEEEECSSHHHHCSCH
T ss_pred             CCCEEEEECCCCchhcccccccce--EEEEeecccccccccccccccccccccccccccccccccceeeecchhhhhhhH
Confidence            367999999999999999999876  999999999999999987542        236778999999985 689999999


Q ss_pred             HHHHHHHHHcccCCcEEEEEEecc
Q 019861          248 STGVAEISRVLRPGGVFVGTTYIV  271 (334)
Q Consensus       248 ~~~L~~i~r~LkpgG~lii~~~~~  271 (334)
                      ..+|+++.++|||||.+++.+++.
T Consensus       120 ~~~l~~i~r~Lk~gG~~ii~~~~~  143 (246)
T d2avna1         120 DKAFSEIRRVLVPDGLLIATVDNF  143 (246)
T ss_dssp             HHHHHHHHHHEEEEEEEEEEEEBH
T ss_pred             HHHHHHHHhhcCcCcEEEEEECCH
Confidence            999999999999999999999865

>d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.73  E-value=6.5e-17  Score=138.84  Aligned_cols=142  Identities=11%  Similarity=0.056  Sum_probs=111.4

Q ss_pred             ccCCCCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCC-------------CCCCCCceEEEeC
Q 019861          172 YLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES-------------NFPKDSIDAVHAG  238 (334)
Q Consensus       172 ~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~-------------~~~~~~fD~V~~~  238 (334)
                      .++..++.+|||+|||+|.++..+++.++.+.|+|+|+|+.|++.++++.....             .+.+..+|++++.
T Consensus        69 ~l~ikpG~~VLDlGcGsG~~~~~la~~~~~g~V~aVDiS~~~i~~a~~~a~~~~ni~~i~~d~~~~~~~~~~~~~v~~i~  148 (230)
T d1g8sa_          69 VMPIKRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAERENIIPILGDANKPQEYANIVEKVDVIY  148 (230)
T ss_dssp             CCCCCTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTCTTEEEEECCTTCGGGGTTTCCCEEEEE
T ss_pred             hCCCCCCCEEEEeCEEcCHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHhhhcccceEEEeeccCcccccccceeEEee
Confidence            456778999999999999999999999888899999999999999998755432             2345678888888


Q ss_pred             ccccCCCCHHHHHHHHHHcccCCcEEEEEEeccCCCCCchHHHHHHHHHhhhhcCccCCCCHHHHHHHHHhCCCcEEEEe
Q 019861          239 AAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLCRACGLVDFKCT  318 (334)
Q Consensus       239 ~vl~h~~d~~~~L~~i~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~l~~ll~~~Gf~~v~~~  318 (334)
                      ..++|..++..++.++++.|||||.+++............+.                 ...+++.+.|+++||++++..
T Consensus       149 ~~~~~~~~~~~~l~~~~r~LKpgG~~~i~~k~~~~d~~~~~~-----------------~~~~e~~~~L~~aGF~ive~i  211 (230)
T d1g8sa_         149 EDVAQPNQAEILIKNAKWFLKKGGYGMIAIKARSIDVTKDPK-----------------EIFKEQKEILEAGGFKIVDEV  211 (230)
T ss_dssp             ECCCSTTHHHHHHHHHHHHEEEEEEEEEEEEGGGTCSSSCHH-----------------HHHHHHHHHHHHHTEEEEEEE
T ss_pred             ccccchHHHHHHHHHHHHhcccCceEEEEeeccccCCCCCHH-----------------HHHHHHHHHHHHcCCEEEEEe
Confidence            889999999999999999999999999987665322111111                 013577889999999999876


Q ss_pred             ecC----cEEEEEEEc
Q 019861          319 RNR----GFVMFTATK  330 (334)
Q Consensus       319 ~~g----~~~~~~a~K  330 (334)
                      ...    .+.++++.-
T Consensus       212 dL~py~~~H~~vvg~y  227 (230)
T d1g8sa_         212 DIEPFEKDHVMFVGIW  227 (230)
T ss_dssp             ECTTTSTTEEEEEEEE
T ss_pred             cCCCCcCCeEEEEEEe
Confidence            543    366776653

>d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Putative methyltransferase CAC2371
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=99.72  E-value=8.5e-17  Score=139.69  Aligned_cols=153  Identities=14%  Similarity=0.156  Sum_probs=106.0

Q ss_pred             CCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCC-----------CC-CCCCceEEEeC-ccccC
Q 019861          177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES-----------NF-PKDSIDAVHAG-AAIHC  243 (334)
Q Consensus       177 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~-----------~~-~~~~fD~V~~~-~vl~h  243 (334)
                      ++++|||||||+|.++..+++.+.  +++|+|+|+.|++.|+++.....           .+ .+++||+|+|. .+++|
T Consensus        37 ~~~~vLDiGCG~G~~~~~l~~~g~--~v~GvD~S~~ml~~A~~~~~~~~~~v~~~~~d~~~~~~~~~fD~i~~~~~~~~~  114 (246)
T d1y8ca_          37 VFDDYLDLACGTGNLTENLCPKFK--NTWAVDLSQEMLSEAENKFRSQGLKPRLACQDISNLNINRKFDLITCCLDSTNY  114 (246)
T ss_dssp             CTTEEEEETCTTSTTHHHHGGGSS--EEEEECSCHHHHHHHHHHHHHTTCCCEEECCCGGGCCCSCCEEEEEECTTGGGG
T ss_pred             CCCeEEEEeCcCCHHHHHHHHhCC--ccEeeccchhhhhhccccccccCccceeeccchhhhcccccccccceeeeeeec
Confidence            357999999999999999999987  99999999999999998765432           12 25789999985 78888


Q ss_pred             CCCH---HHHHHHHHHcccCCcEEEEEEeccCCC---CCchHHH---HH---HHH-Hh-------------------hhh
Q 019861          244 WSSP---STGVAEISRVLRPGGVFVGTTYIVDGP---FNLIPFS---RL---LRQ-NM-------------------MQI  291 (334)
Q Consensus       244 ~~d~---~~~L~~i~r~LkpgG~lii~~~~~~~~---~~~~~~~---~~---~~~-~~-------------------~~~  291 (334)
                      +.++   ..+|++++++|+|||.+++...+....   .....+.   ..   .+. .+                   ...
T Consensus       115 ~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  194 (246)
T d1y8ca_         115 IIDSDDLKKYFKAVSNHLKEGGVFIFDINSYYKLSQVLGNNDFNYDDDEVFYYWENQFEDDLVSMYISFFVRDGEFYKRF  194 (246)
T ss_dssp             CCSHHHHHHHHHHHHTTEEEEEEEEEEEECHHHHHTTTTTCCEEEEETTEEEEEEEEEETTEEEEEEEEEEECSSSEEEE
T ss_pred             cCCHHHHHHHHHHHHHhCCCCeEEEEEeCCHHHHhhhcccCceeecCCcEEEEEeeccCCcceeEEEEEEEecCCceEEE
Confidence            8755   568999999999999999866543100   0000000   00   000 00                   000


Q ss_pred             --cCccCCCCHHHHHHHHHhCCCcEEEEeec---------CcEEEEEEEcC
Q 019861          292 --SGSYTFLSEREIEDLCRACGLVDFKCTRN---------RGFVMFTATKP  331 (334)
Q Consensus       292 --~~~~~~~t~~~l~~ll~~~Gf~~v~~~~~---------g~~~~~~a~K~  331 (334)
                        ....+.++.++++++++++||+.++....         ...++++++|.
T Consensus       195 ~e~~~~~~~~~~~l~~~l~~~Gf~~i~~~~~~~~~~~~~~s~r~~~v~kk~  245 (246)
T d1y8ca_         195 DEEHEERAYKEEDIEKYLKHGQLNILDKVDCYSNKKVEKFTERITYLVKLG  245 (246)
T ss_dssp             EEEEEEECCCHHHHHHHHHHTTEEEEEEEESSSSCBCCTTCSEEEEEEEEC
T ss_pred             EEEEEEEcCCHHHHHHHHHHCCCEEEEEEecCCCCCCCCCCceEEEEEEec
Confidence              00124579999999999999998875432         23456777774

>d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ribosomal protein L11 methyltransferase PrmA
domain: PrmA-like protein TTHA0656 (TT0836)
species: Thermus thermophilus [TaxId: 274]

Probab=99.71  E-value=4.8e-17  Score=141.52  Aligned_cols=131  Identities=17%  Similarity=0.229  Sum_probs=105.6

Q ss_pred             HHHHcccCCCCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCC------------CCCCCCceE
Q 019861          167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES------------NFPKDSIDA  234 (334)
Q Consensus       167 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~------------~~~~~~fD~  234 (334)
                      +.+....  .++.+|||+|||+|.++..+++.+.  +|+|+|+|+.+++.|+++.....            .+++++||+
T Consensus       112 ~~l~~~~--~~g~~VLDiGcGsG~l~i~aa~~g~--~V~gvDis~~av~~A~~na~~n~~~~~~~~~d~~~~~~~~~fD~  187 (254)
T d2nxca1         112 KALARHL--RPGDKVLDLGTGSGVLAIAAEKLGG--KALGVDIDPMVLPQAEANAKRNGVRPRFLEGSLEAALPFGPFDL  187 (254)
T ss_dssp             HHHHHHC--CTTCEEEEETCTTSHHHHHHHHTTC--EEEEEESCGGGHHHHHHHHHHTTCCCEEEESCHHHHGGGCCEEE
T ss_pred             HHHHhhc--CccCEEEEcccchhHHHHHHHhcCC--EEEEEECChHHHHHHHHHHHHcCCceeEEeccccccccccccch
Confidence            3444444  3588999999999999999998876  89999999999999998876433            245689999


Q ss_pred             EEeCccccCCCCHHHHHHHHHHcccCCcEEEEEEeccCCCCCchHHHHHHHHHhhhhcCccCCCCHHHHHHHHHhCCCcE
Q 019861          235 VHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLCRACGLVD  314 (334)
Q Consensus       235 V~~~~vl~h~~d~~~~L~~i~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~l~~ll~~~Gf~~  314 (334)
                      |+++...+.   ...++.++.++|||||+++++....+                          ..+.+.+.++++||++
T Consensus       188 V~ani~~~~---l~~l~~~~~~~LkpGG~lilSgil~~--------------------------~~~~v~~~~~~~Gf~~  238 (254)
T d2nxca1         188 LVANLYAEL---HAALAPRYREALVPGGRALLTGILKD--------------------------RAPLVREAMAGAGFRP  238 (254)
T ss_dssp             EEEECCHHH---HHHHHHHHHHHEEEEEEEEEEEEEGG--------------------------GHHHHHHHHHHTTCEE
T ss_pred             hhhcccccc---HHHHHHHHHHhcCCCcEEEEEecchh--------------------------hHHHHHHHHHHCCCEE
Confidence            999755443   35678899999999999999765321                          2568899999999999


Q ss_pred             EEEeecCcEEEEEEEc
Q 019861          315 FKCTRNRGFVMFTATK  330 (334)
Q Consensus       315 v~~~~~g~~~~~~a~K  330 (334)
                      ++....+.|..++.+|
T Consensus       239 ~~~~~~~~Wv~l~~~r  254 (254)
T d2nxca1         239 LEEAAEGEWVLLAYGR  254 (254)
T ss_dssp             EEEEEETTEEEEEEEC
T ss_pred             EEEEEECCEEEEEEeC
Confidence            9998888888888776

>d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.71  E-value=8.4e-17  Score=138.36  Aligned_cols=135  Identities=16%  Similarity=0.120  Sum_probs=107.1

Q ss_pred             cHHHHHHHHcccCCCCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCC----------------
Q 019861          162 PEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES----------------  225 (334)
Q Consensus       162 ~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~----------------  225 (334)
                      ...+.+.+.+++...++.+|||+|||+|..+..|++.|.  +|+|+|+|+.+++.++++.....                
T Consensus        30 ~~~l~~~~~~~l~~~~~~rvLd~GCG~G~~a~~LA~~G~--~V~gvD~S~~ai~~a~~~~~~~~~~~~~~~~~~~~~~~~  107 (229)
T d2bzga1          30 HQLLKKHLDTFLKGKSGLRVFFPLCGKAVEMKWFADRGH--SVVGVEISELGIQEFFTEQNLSYSEEPITEIPGTKVFKS  107 (229)
T ss_dssp             CHHHHHHHHHHHTTCCSCEEEETTCTTCTHHHHHHHTTC--EEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEE
T ss_pred             CHHHHHHHHHhcCCCCCCEEEEeCCCCcHHHHHHHhCCC--cEEEEeCCHHHHHHHHHHhhccccccchhcccccceeee
Confidence            344556677777777889999999999999999999987  99999999999999998754210                


Q ss_pred             ----------------CCCCCCceEEEeCccccCCC--CHHHHHHHHHHcccCCcEEEEEEeccCCCCCchHHHHHHHHH
Q 019861          226 ----------------NFPKDSIDAVHAGAAIHCWS--SPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQN  287 (334)
Q Consensus       226 ----------------~~~~~~fD~V~~~~vl~h~~--d~~~~L~~i~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~  287 (334)
                                      +...+.||+|+...+++|++  +...+++++.++|||||++++.+...+....           
T Consensus       108 ~~~~v~~~~~d~~~l~~~~~~~fd~i~~~~~l~~~~~~~r~~~~~~~~~~LkpgG~~~l~~~~~~~~~~-----------  176 (229)
T d2bzga1         108 SSGNISLYCCSIFDLPRTNIGKFDMIWDRGALVAINPGDRKCYADTMFSLLGKKFQYLLCVLSYDPTKH-----------  176 (229)
T ss_dssp             TTSSEEEEESCGGGGGGSCCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEEEEEEEEEEEECCTTTC-----------
T ss_pred             cCCcEEEEEcchhhccccccCceeEEEEEEEEEeccchhhHHHHHHHHhhcCCcceEEEEEcccCCCCC-----------
Confidence                            24467899999999999996  4468999999999999999998887643211           


Q ss_pred             hhhhcCccCCCCHHHHHHHHHhCCCcE
Q 019861          288 MMQISGSYTFLSEREIEDLCRACGLVD  314 (334)
Q Consensus       288 ~~~~~~~~~~~t~~~l~~ll~~~Gf~~  314 (334)
                          .+....++.+++.+++.. +|.+
T Consensus       177 ----~gpp~~~~~~el~~lf~~-~~~i  198 (229)
T d2bzga1         177 ----PGPPFYVPHAEIERLFGK-ICNI  198 (229)
T ss_dssp             ----CCSSCCCCHHHHHHHHTT-TEEE
T ss_pred             ----CCCCCCCCHHHHHHHhcC-CCEE
Confidence                112346789999999954 6654

>d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Phenylethanolamine N-methyltransferase, PNMTase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.71  E-value=1.5e-17  Score=146.14  Aligned_cols=131  Identities=20%  Similarity=0.213  Sum_probs=98.2

Q ss_pred             CCCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCC-----------------------------
Q 019861          175 PVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES-----------------------------  225 (334)
Q Consensus       175 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~-----------------------------  225 (334)
                      ...+.+|||||||+|.+....+... ..+|+|+|+|+.|++.+++.+....                             
T Consensus        52 ~~~g~~vLDiGcG~g~~~~~~~~~~-~~~v~~~D~S~~~i~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~  130 (263)
T d2g72a1          52 EVSGRTLIDIGSGPTVYQLLSACSH-FEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQL  130 (263)
T ss_dssp             CSCCSEEEEETCTTCCGGGTTGGGG-CSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHH
T ss_pred             CCCCcEEEEeccCCCHHHHHHhccc-CCeEEEEeCCHHHHHHHHHHHhcCcccccchhhhhhhhhhccccchhhhhHHHh
Confidence            3457899999999997765444433 2389999999999999987653211                             


Q ss_pred             ---------------------CCCCCCceEEEeCccccCCC----CHHHHHHHHHHcccCCcEEEEEEeccCCCCCchHH
Q 019861          226 ---------------------NFPKDSIDAVHAGAAIHCWS----SPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPF  280 (334)
Q Consensus       226 ---------------------~~~~~~fD~V~~~~vl~h~~----d~~~~L~~i~r~LkpgG~lii~~~~~~~~~~~~~~  280 (334)
                                           +.+.++||+|++.++|||+.    ++..+|++++++|||||.+++..+........   
T Consensus       131 ~~~~~~~~~~Dv~~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~~~~~LkPGG~li~~~~~~~~~~~~---  207 (263)
T d2g72a1         131 RARVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLLIGALEESWYLA---  207 (263)
T ss_dssp             HHHEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEEESCCEEEE---
T ss_pred             hhhhhccccccccCCCccccCCcCcCccCeeeeHHHHHHHccCHHHHHHHHHHHHHHcCCCCEEEEecccCCccccc---
Confidence                                 12346899999999999996    45789999999999999999988865421100   


Q ss_pred             HHHHHHHhhhhcCccCCCCHHHHHHHHHhCCCcEEEE
Q 019861          281 SRLLRQNMMQISGSYTFLSEREIEDLCRACGLVDFKC  317 (334)
Q Consensus       281 ~~~~~~~~~~~~~~~~~~t~~~l~~ll~~~Gf~~v~~  317 (334)
                              ....-...+++.++++++++++||++++.
T Consensus       208 --------~~~~~~~~~~t~e~v~~~l~~aGf~v~~~  236 (263)
T d2g72a1         208 --------GEARLTVVPVSEEEVREALVRSGYKVRDL  236 (263)
T ss_dssp             --------TTEEEECCCCCHHHHHHHHHHTTEEEEEE
T ss_pred             --------CCcccccCCCCHHHHHHHHHHCCCeEEEE
Confidence                    00011234689999999999999998763

>d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Pseudomonas syringae [TaxId: 317]

Probab=99.69  E-value=4.2e-17  Score=136.25  Aligned_cols=127  Identities=13%  Similarity=0.084  Sum_probs=97.9

Q ss_pred             cccCCCCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCCC------------------------
Q 019861          171 GYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESN------------------------  226 (334)
Q Consensus       171 ~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~------------------------  226 (334)
                      ..+...++.+|||+|||+|..+..|++.|.  +|+|+|+|+.|++.|+++......                        
T Consensus        14 ~~l~~~~~~rvLd~GCG~G~~a~~la~~G~--~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~   91 (201)
T d1pjza_          14 SSLNVVPGARVLVPLCGKSQDMSWLSGQGY--HVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFA   91 (201)
T ss_dssp             HHHCCCTTCEEEETTTCCSHHHHHHHHHCC--EEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSS
T ss_pred             HHcCCCCCCEEEEecCcCCHHHHHHHHcCC--ceEeecccHHHHHHHHHHhccccchhhhhhhhhccccccceecccccc
Confidence            335566789999999999999999999987  999999999999999998754310                        


Q ss_pred             ---CCCCCceEEEeCccccCCCC--HHHHHHHHHHcccCCcEEEEEEeccCCCCCchHHHHHHHHHhhhhcCccCCCCHH
Q 019861          227 ---FPKDSIDAVHAGAAIHCWSS--PSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSER  301 (334)
Q Consensus       227 ---~~~~~fD~V~~~~vl~h~~d--~~~~L~~i~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~  301 (334)
                         .....||+|++..+++|+.+  ...++++++++|||||.+++...........               +.....+.+
T Consensus        92 l~~~~~~~~D~i~~~~~l~~l~~~~~~~~~~~i~~~LkpgG~l~l~~~~~~~~~~~---------------~p~~~~~~~  156 (201)
T d1pjza_          92 LTARDIGHCAAFYDRAAMIALPADMRERYVQHLEALMPQACSGLLITLEYDQALLE---------------GPPFSVPQT  156 (201)
T ss_dssp             STHHHHHSEEEEEEESCGGGSCHHHHHHHHHHHHHHSCSEEEEEEEEESSCSSSSS---------------SCCCCCCHH
T ss_pred             cccccccceeEEEEEeeeEecchhhhHHHHHHHHHhcCCCcEEEEEEcccccccCC---------------CccccCCHH
Confidence               11357999999999999985  4689999999999999998887765432111               122345777


Q ss_pred             HHHHHHHhCCCcEE
Q 019861          302 EIEDLCRACGLVDF  315 (334)
Q Consensus       302 ~l~~ll~~~Gf~~v  315 (334)
                      ++++++. .+|++.
T Consensus       157 el~~l~~-~~~~i~  169 (201)
T d1pjza_         157 WLHRVMS-GNWEVT  169 (201)
T ss_dssp             HHHHTSC-SSEEEE
T ss_pred             HHHHHhC-CCcEEE
Confidence            8877763 566543

>d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical methyltransferase PH1305
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.67  E-value=2e-16  Score=137.38  Aligned_cols=99  Identities=25%  Similarity=0.365  Sum_probs=80.9

Q ss_pred             HcccCCCCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCC-------------CCCCCCceEEE
Q 019861          170 KGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES-------------NFPKDSIDAVH  236 (334)
Q Consensus       170 ~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~-------------~~~~~~fD~V~  236 (334)
                      .......++.+|||||||+|.++..+++.+.  +|+|+|+|+.|++.|+++.....             ++ +++||+|+
T Consensus        34 ~~~~~~~~~~~iLDiGcGtG~~~~~l~~~~~--~v~gvD~s~~mi~~a~~~~~~~~~~i~~~~~d~~~l~~-~~~fD~I~  110 (251)
T d1wzna1          34 FKEDAKREVRRVLDLACGTGIPTLELAERGY--EVVGLDLHEEMLRVARRKAKERNLKIEFLQGDVLEIAF-KNEFDAVT  110 (251)
T ss_dssp             HHHTCSSCCCEEEEETCTTCHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTTCCCEEEESCGGGCCC-CSCEEEEE
T ss_pred             HHHhcCCCCCEEEEeCCCCCccchhhcccce--EEEEEeeccccccccccccccccccchheehhhhhccc-ccccchHh
Confidence            3334455677999999999999999999886  99999999999999999865432             33 36899999


Q ss_pred             eC-ccccCCC--CHHHHHHHHHHcccCCcEEEEEEecc
Q 019861          237 AG-AAIHCWS--SPSTGVAEISRVLRPGGVFVGTTYIV  271 (334)
Q Consensus       237 ~~-~vl~h~~--d~~~~L~~i~r~LkpgG~lii~~~~~  271 (334)
                      +. .+++|+.  +...+|++++++|||||++++..++.
T Consensus       111 ~~~~~~~~~~~~~~~~~L~~~~~~LkpgG~lii~~~~~  148 (251)
T d1wzna1         111 MFFSTIMYFDEEDLRKLFSKVAEALKPGGVFITDFPCW  148 (251)
T ss_dssp             ECSSGGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEC-
T ss_pred             hhhhhhhcCChHHHHHHHHHHHHHcCCCcEEEEEeccc
Confidence            86 5778874  45689999999999999999977653

>d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein MJ0882
domain: Hypothetical protein MJ0882
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.66  E-value=5.9e-16  Score=129.61  Aligned_cols=102  Identities=14%  Similarity=0.167  Sum_probs=85.8

Q ss_pred             HHHHcccCCCCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCC---------------CCCCCC
Q 019861          167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES---------------NFPKDS  231 (334)
Q Consensus       167 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~---------------~~~~~~  231 (334)
                      +.+.+.+...++.+|||+|||+|.++..++..++  +++++|+|+.+++.+++++....               .+++++
T Consensus        42 ~lLi~~l~~~~~~~VLDiGcG~G~~~~~la~~~~--~v~~iD~s~~~i~~a~~n~~~~~l~~~~i~~~~~d~~~~~~~~~  119 (194)
T d1dusa_          42 KILVENVVVDKDDDILDLGCGYGVIGIALADEVK--STTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYENVKDRK  119 (194)
T ss_dssp             HHHHHHCCCCTTCEEEEETCTTSHHHHHHGGGSS--EEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTTTCTTSC
T ss_pred             HHHHHhCCcCCCCeEEEEeecCChhHHHHHhhcc--ccceeeeccccchhHHHHHHHhCCccceEEEEEcchhhhhccCC
Confidence            4566677777899999999999999999998887  99999999999999998765321               355789


Q ss_pred             ceEEEeCccccCCCCH-HHHHHHHHHcccCCcEEEEEEec
Q 019861          232 IDAVHAGAAIHCWSSP-STGVAEISRVLRPGGVFVGTTYI  270 (334)
Q Consensus       232 fD~V~~~~vl~h~~d~-~~~L~~i~r~LkpgG~lii~~~~  270 (334)
                      ||+|++...+++..+. ..+++++.++|+|||.+++....
T Consensus       120 fD~Ii~~~p~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~  159 (194)
T d1dusa_         120 YNKIITNPPIRAGKEVLHRIIEEGKELLKDNGEIWVVIQT  159 (194)
T ss_dssp             EEEEEECCCSTTCHHHHHHHHHHHHHHEEEEEEEEEEEES
T ss_pred             ceEEEEcccEEecchhhhhHHHHHHHhcCcCcEEEEEEeC
Confidence            9999999988876654 57899999999999999886543

>d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Guanidinoacetate methyltransferase
domain: Guanidinoacetate methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=7.3e-17  Score=138.81  Aligned_cols=90  Identities=12%  Similarity=0.278  Sum_probs=78.3

Q ss_pred             CCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCC---------------CCCCCCceEEE-----
Q 019861          177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES---------------NFPKDSIDAVH-----  236 (334)
Q Consensus       177 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~---------------~~~~~~fD~V~-----  236 (334)
                      ++++|||||||+|..+..+++.++ .+++|+|+|+.+++.|+++.....               .+++++||.|+     
T Consensus        53 ~g~~VLdIGcG~G~~a~~~a~~~~-~~v~~id~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~fD~~~  131 (229)
T d1zx0a1          53 KGGRVLEVGFGMAIAASKVQEAPI-DEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTLPDGHFDGILYDTYP  131 (229)
T ss_dssp             TCEEEEEECCTTSHHHHHHHTSCE-EEEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGGSCTTCEEEEEECCCC
T ss_pred             CCCeEEEeeccchHHHHHHHHcCC-CeEEEeCCCHHHHHHHHHHhhhcccccccccccccccccccccccccceeecccc
Confidence            478999999999999999998763 589999999999999999876432               46778999988     


Q ss_pred             eCccccCCCCHHHHHHHHHHcccCCcEEEEE
Q 019861          237 AGAAIHCWSSPSTGVAEISRVLRPGGVFVGT  267 (334)
Q Consensus       237 ~~~vl~h~~d~~~~L~~i~r~LkpgG~lii~  267 (334)
                      +...++|+.++..++++++|+|||||++++.
T Consensus       132 ~~~~~~~~~~~~~~~~~~~r~LkpGG~~~~~  162 (229)
T d1zx0a1         132 LSEETWHTHQFNFIKNHAFRLLKPGGVLTYC  162 (229)
T ss_dssp             CBGGGTTTHHHHHHHHTHHHHEEEEEEEEEC
T ss_pred             cccccccccCHHHHHHHHHHHcCCCcEEEEE
Confidence            4678899999999999999999999999873

>d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glycine N-methyltransferase
domain: Glycine N-methyltransferase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.64  E-value=6.3e-16  Score=137.67  Aligned_cols=107  Identities=22%  Similarity=0.315  Sum_probs=85.9

Q ss_pred             HHHHHHHHcccCCCCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCC-----------------
Q 019861          163 EKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES-----------------  225 (334)
Q Consensus       163 ~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~-----------------  225 (334)
                      ....+.+...++..++.+|||+|||+|.++..|++.|.  +|+|+|+|+.|++.|+++.....                 
T Consensus        42 ~~~~~~l~~~l~~~~~~~vLD~GcG~G~~~~~la~~g~--~v~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~~~~~~~~  119 (292)
T d1xvaa_          42 AEYKAWLLGLLRQHGCHRVLDVACGTGVDSIMLVEEGF--SVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLT  119 (292)
T ss_dssp             HHHHHHHHHHHHHTTCCEEEESSCTTSHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGG
T ss_pred             HHHHHHHHHHhhhcCCCEEEEecCCCcHHHHHHHHcCC--eeeeccCchHHHHHHHHHHHhcccccccceeeeeeccccc
Confidence            34445566666656678999999999999999999986  99999999999999988754321                 


Q ss_pred             ----CCCCCCceEEEeC-ccccCCCCH-------HHHHHHHHHcccCCcEEEEEEecc
Q 019861          226 ----NFPKDSIDAVHAG-AAIHCWSSP-------STGVAEISRVLRPGGVFVGTTYIV  271 (334)
Q Consensus       226 ----~~~~~~fD~V~~~-~vl~h~~d~-------~~~L~~i~r~LkpgG~lii~~~~~  271 (334)
                          ....++||+|++. .+++|++++       ..+|++++++|||||++++...+.
T Consensus       120 ~~~~~~~~~~fd~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~  177 (292)
T d1xvaa_         120 LDKDVPAGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDHRNY  177 (292)
T ss_dssp             HHHHSCCTTCEEEEEECSSCGGGSCCTTSSSHHHHHHHHHHHHTEEEEEEEEEEEECH
T ss_pred             cccccCCCCCceEEEEecCchhhcCCcccChHHHHHHHHHHHHHcCcCcEEEEeecCH
Confidence                1235689999975 689999764       469999999999999999987654

>d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap (Guanine N-7) methyltransferase
domain: mRNA cap (Guanine N-7) methyltransferase
species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]

Probab=99.64  E-value=6.2e-16  Score=134.77  Aligned_cols=94  Identities=21%  Similarity=0.328  Sum_probs=79.5

Q ss_pred             CCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCC---------------CC-CCCCceEEEeCcc
Q 019861          177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES---------------NF-PKDSIDAVHAGAA  240 (334)
Q Consensus       177 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~---------------~~-~~~~fD~V~~~~v  240 (334)
                      ++.+|||||||+|..+..+++.+. .+|+|+|+|+.|++.|+++.....               ++ .+++||+|++.++
T Consensus        24 ~~~~VLDlGCG~G~~~~~~~~~~~-~~v~GiD~S~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~~~fD~V~~~~~  102 (252)
T d1ri5a_          24 RGDSVLDLGCGKGGDLLKYERAGI-GEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHMDLGKEFDVISSQFS  102 (252)
T ss_dssp             TTCEEEEETCTTTTTHHHHHHHTC-SEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSCCCCSSCEEEEEEESC
T ss_pred             CcCEEEEecccCcHHHHHHHHcCC-CeEEEecCCHHHHHHHHHHHHhcCCCcceEEEEcchhhhcccccccceEEEEcce
Confidence            478999999999999999988763 589999999999999998765321               22 3668999999999


Q ss_pred             ccCCCCH----HHHHHHHHHcccCCcEEEEEEecc
Q 019861          241 IHCWSSP----STGVAEISRVLRPGGVFVGTTYIV  271 (334)
Q Consensus       241 l~h~~d~----~~~L~~i~r~LkpgG~lii~~~~~  271 (334)
                      +||+.++    ..+|+++.++|+|||++++.+++.
T Consensus       103 l~~~~~~~~~~~~~l~~i~~~Lk~gG~~i~~~~~~  137 (252)
T d1ri5a_         103 FHYAFSTSESLDIAQRNIARHLRPGGYFIMTVPSR  137 (252)
T ss_dssp             GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEECH
T ss_pred             eeecCCCHHHHHHHHHHHhceeCCCCEEEEEecCH
Confidence            9998543    478999999999999999988864

>d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein TM0748
species: Thermotoga maritima [TaxId: 2336]

Probab=99.60  E-value=3.4e-15  Score=130.58  Aligned_cols=127  Identities=19%  Similarity=0.216  Sum_probs=103.3

Q ss_pred             CCCcHHHHHHHHcccCCCCCCcEEEECCCcCHHHHHHHHc-CCCCeEEEEeCCHHHHHHHHHHHhcCC------------
Q 019861          159 FPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQQES------------  225 (334)
Q Consensus       159 ~~~~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~~v~giD~s~~~~~~a~~~~~~~~------------  225 (334)
                      ..-..+....+..+++..++.+|||+|||+|.++..+++. ++.++++++|+++.+++.|++++....            
T Consensus        85 qiiypkd~~~Ii~~l~i~pG~~VLDiG~GsG~lt~~lA~~~~~~G~V~~vD~~~~~~~~A~~~~~~~g~~~~v~~~~~d~  164 (266)
T d1o54a_          85 QIVYPKDSSFIAMMLDVKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDI  164 (266)
T ss_dssp             CCCCHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCG
T ss_pred             cccchHHHHHHHHhhCCCCCCEEEECCCCCCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccccCcEEEeccc
Confidence            3444566778889999999999999999999999999876 567899999999999999999876432            


Q ss_pred             --CCCCCCceEEEeCccccCCCCHHHHHHHHHHcccCCcEEEEEEeccCCCCCchHHHHHHHHHhhhhcCccCCCCHHHH
Q 019861          226 --NFPKDSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREI  303 (334)
Q Consensus       226 --~~~~~~fD~V~~~~vl~h~~d~~~~L~~i~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~l  303 (334)
                        .++...||.|+     +|+++|..+|+++.++|||||++++..|+.+                          ..+.+
T Consensus       165 ~~~~~~~~~D~V~-----~d~p~p~~~l~~~~~~LKpGG~lv~~~P~~~--------------------------Qv~~~  213 (266)
T d1o54a_         165 SEGFDEKDVDALF-----LDVPDPWNYIDKCWEALKGGGRFATVCPTTN--------------------------QVQET  213 (266)
T ss_dssp             GGCCSCCSEEEEE-----ECCSCGGGTHHHHHHHEEEEEEEEEEESSHH--------------------------HHHHH
T ss_pred             cccccccceeeeE-----ecCCCHHHHHHHHHhhcCCCCEEEEEeCccc--------------------------HHHHH
Confidence              34556777765     5789999999999999999999999877531                          12356


Q ss_pred             HHHHHhCCCcEEE
Q 019861          304 EDLCRACGLVDFK  316 (334)
Q Consensus       304 ~~ll~~~Gf~~v~  316 (334)
                      .+.|++.||..++
T Consensus       214 ~~~l~~~gF~~i~  226 (266)
T d1o54a_         214 LKKLQELPFIRIE  226 (266)
T ss_dssp             HHHHHHSSEEEEE
T ss_pred             HHHHHHCCceeEE
Confidence            6778889997665

>d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein Ta0852
species: Thermoplasma acidophilum [TaxId: 2303]

Probab=99.60  E-value=1.5e-15  Score=131.32  Aligned_cols=101  Identities=19%  Similarity=0.161  Sum_probs=82.1

Q ss_pred             HHHHHHcccCCCCCCcEEEECCCcCHHHHHHHHc-CCCCeEEEEeCCHHHHHHHHHHHhcCC--------------CCCC
Q 019861          165 EFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQQES--------------NFPK  229 (334)
Q Consensus       165 ~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~~v~giD~s~~~~~~a~~~~~~~~--------------~~~~  229 (334)
                      ....+..++...+|.+|||+|||+|.++..+++. ++.++|+++|.++.+++.|++++....              .+++
T Consensus        73 D~~~Ii~~l~i~pG~rVLEiG~GsG~lt~~la~~v~~~g~V~~vD~~e~~~~~A~~n~~~~~~~~nv~~~~~Di~~~~~~  152 (250)
T d1yb2a1          73 DASYIIMRCGLRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIADFISD  152 (250)
T ss_dssp             --------CCCCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTTCCCS
T ss_pred             HHHHHHHHcCCCCcCEEEEeeeeCcHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhcCCCceEEEEeeeeccccc
Confidence            3456777888889999999999999999999886 667799999999999999999876532              2567


Q ss_pred             CCceEEEeCccccCCCCHHHHHHHHHHcccCCcEEEEEEec
Q 019861          230 DSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYI  270 (334)
Q Consensus       230 ~~fD~V~~~~vl~h~~d~~~~L~~i~r~LkpgG~lii~~~~  270 (334)
                      +.||.|++     ++++|..+|.++.++|||||++++..|+
T Consensus       153 ~~fD~V~l-----d~p~p~~~l~~~~~~LKpGG~lv~~~P~  188 (250)
T d1yb2a1         153 QMYDAVIA-----DIPDPWNHVQKIASMMKPGSVATFYLPN  188 (250)
T ss_dssp             CCEEEEEE-----CCSCGGGSHHHHHHTEEEEEEEEEEESS
T ss_pred             ceeeeeee-----cCCchHHHHHHHHHhcCCCceEEEEeCC
Confidence            88999986     5789999999999999999999998775

>d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Precorrin-6Y methyltransferase (CbiT)
domain: Precorrin-6Y methyltransferase (CbiT)
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.60  E-value=1e-14  Score=121.10  Aligned_cols=104  Identities=19%  Similarity=0.172  Sum_probs=86.6

Q ss_pred             cHHHHHHHHcccCCCCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCC---------------C
Q 019861          162 PEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES---------------N  226 (334)
Q Consensus       162 ~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~---------------~  226 (334)
                      .++....+...+.+.++.+|||+|||+|.++..++..+.  +|+|+|+++.+++.|+++.....               .
T Consensus        18 ~~eir~~il~~l~~~~g~~VLDiGcGsG~~s~~lA~~~~--~V~avD~~~~~l~~a~~n~~~~gl~~~v~~~~gda~~~~   95 (186)
T d1l3ia_          18 AMEVRCLIMCLAEPGKNDVAVDVGCGTGGVTLELAGRVR--RVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPEAL   95 (186)
T ss_dssp             CHHHHHHHHHHHCCCTTCEEEEESCTTSHHHHHHHTTSS--EEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHHHH
T ss_pred             hHHHHHHHHHhcCCCCCCEEEEEECCeEcccccccccce--EEEEecCCHHHHHHHHHHHHHcCCCcceEEEECchhhcc
Confidence            345566777888888999999999999999999988765  99999999999999999876543               2


Q ss_pred             CCCCCceEEEeCccccCCCCHHHHHHHHHHcccCCcEEEEEEec
Q 019861          227 FPKDSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYI  270 (334)
Q Consensus       227 ~~~~~fD~V~~~~vl~h~~d~~~~L~~i~r~LkpgG~lii~~~~  270 (334)
                      .+...||+|++....+|   ...+++++.+.|||||++++....
T Consensus        96 ~~~~~~D~v~~~~~~~~---~~~~~~~~~~~LkpgG~lvi~~~~  136 (186)
T d1l3ia_          96 CKIPDIDIAVVGGSGGE---LQEILRIIKDKLKPGGRIIVTAIL  136 (186)
T ss_dssp             TTSCCEEEEEESCCTTC---HHHHHHHHHHTEEEEEEEEEEECB
T ss_pred             cccCCcCEEEEeCcccc---chHHHHHHHHHhCcCCEEEEEeec
Confidence            34579999999876554   567899999999999999886654

>d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.59  E-value=1.8e-14  Score=122.86  Aligned_cols=141  Identities=12%  Similarity=0.089  Sum_probs=103.0

Q ss_pred             cccCCCCCCcEEEECCCcCHHHHHHHHc-CCCCeEEEEeCCHHHHHHHHHHHhcCC---------------CCCCCCceE
Q 019861          171 GYLKPVLGGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQQES---------------NFPKDSIDA  234 (334)
Q Consensus       171 ~~l~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~~v~giD~s~~~~~~a~~~~~~~~---------------~~~~~~fD~  234 (334)
                      +.+...+|.+|||+|||+|.++..+++. |+.+.|+|+|+++.+++.++++.....               ......+|+
T Consensus        67 ~~l~i~pG~~VLDlGaGsG~~t~~la~~VG~~G~V~aVD~s~~~l~~a~~~a~~~~~~~~i~~d~~~~~~~~~~~~~vD~  146 (227)
T d1g8aa_          67 KNFPIKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEERRNIVPILGDATKPEEYRALVPKVDV  146 (227)
T ss_dssp             CCCCCCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSCTTEEEEECCTTCGGGGTTTCCCEEE
T ss_pred             cccccCCCCEEEEeccCCCHHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHHhcCCceEEEEECCCcccccccccceEE
Confidence            3456778999999999999999999987 677899999999999999998765432               123457888


Q ss_pred             EEeCccccCCCCHHHHHHHHHHcccCCcEEEEEEeccCCCCCchHHHHHHHHHhhhhcCccCCCCHHHHHHHHHhCCCcE
Q 019861          235 VHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLCRACGLVD  314 (334)
Q Consensus       235 V~~~~vl~h~~d~~~~L~~i~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~l~~ll~~~Gf~~  314 (334)
                      |++  .+.|..++..+++++.+.|||||++++............+..                 -.+++.++ .+.||++
T Consensus       147 i~~--d~~~~~~~~~~l~~~~~~LkpgG~lvi~~ka~~~~~~~~~~~-----------------v~~~v~~l-~~~gf~i  206 (227)
T d1g8aa_         147 IFE--DVAQPTQAKILIDNAEVYLKRGGYGMIAVKSRSIDVTKEPEQ-----------------VFREVERE-LSEYFEV  206 (227)
T ss_dssp             EEE--CCCSTTHHHHHHHHHHHHEEEEEEEEEEEEGGGTCTTSCHHH-----------------HHHHHHHH-HHTTSEE
T ss_pred             EEE--EccccchHHHHHHHHHHhcccCCeEEEEEECCccCCCCCHHH-----------------HHHHHHHH-HHcCCEE
Confidence            776  456667888999999999999999998776432111111110                 01233444 4679999


Q ss_pred             EEEeecC----cEEEEEEEcC
Q 019861          315 FKCTRNR----GFVMFTATKP  331 (334)
Q Consensus       315 v~~~~~g----~~~~~~a~K~  331 (334)
                      ++.....    .+.+++++|.
T Consensus       207 ie~i~L~p~~~~H~~vv~rK~  227 (227)
T d1g8aa_         207 IERLNLEPYEKDHALFVVRKT  227 (227)
T ss_dssp             EEEEECTTTSSSEEEEEEECC
T ss_pred             EEEEcCCCCCCceEEEEEEeC
Confidence            9876543    4788999883

>d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Probable methyltransferase Rv2118c
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.59  E-value=1.8e-15  Score=131.67  Aligned_cols=117  Identities=19%  Similarity=0.212  Sum_probs=97.9

Q ss_pred             HHHhhHhcCCCCcHHHHHHHHcccCCCCCCcEEEECCCcCHHHHHHHHc-CCCCeEEEEeCCHHHHHHHHHHHhcC----
Q 019861          150 WRQNFVWGGFPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQQE----  224 (334)
Q Consensus       150 w~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~~v~giD~s~~~~~~a~~~~~~~----  224 (334)
                      |...+......-..+....+..++...|+.+|||+|||+|.++..|+.. ++.++++++|+++++++.|++++...    
T Consensus        69 ~~~~~~r~tqiiypkD~s~Ii~~l~i~PG~~VLE~G~GsG~lt~~La~~vgp~G~V~~~d~~~~~~~~Ar~n~~~~~~~~  148 (264)
T d1i9ga_          69 YVMSMPRGPQVIYPKDAAQIVHEGDIFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQP  148 (264)
T ss_dssp             HHTTSCSCSCCCCHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSC
T ss_pred             HHhhccCCccccchHHHHHHHHHhCCCCCCEEEecCcCCcHHHHHHHHhhCCCcEEEEecCCHHHHHHHHHhhhhhccCC
Confidence            3333333444555667778889999999999999999999999999887 78889999999999999999876531    


Q ss_pred             -------------CCCCCCCceEEEeCccccCCCCHHHHHHHHHHcccCCcEEEEEEecc
Q 019861          225 -------------SNFPKDSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIV  271 (334)
Q Consensus       225 -------------~~~~~~~fD~V~~~~vl~h~~d~~~~L~~i~r~LkpgG~lii~~~~~  271 (334)
                                   .++++++||+|++     |+++|..++.++.++|||||++++..|+.
T Consensus       149 ~~nv~~~~~d~~~~~~~~~~fDaV~l-----dlp~P~~~l~~~~~~LkpGG~lv~~~P~i  203 (264)
T d1i9ga_         149 PDNWRLVVSDLADSELPDGSVDRAVL-----DMLAPWEVLDAVSRLLVAGGVLMVYVATV  203 (264)
T ss_dssp             CTTEEEECSCGGGCCCCTTCEEEEEE-----ESSCGGGGHHHHHHHEEEEEEEEEEESSH
T ss_pred             CceEEEEecccccccccCCCcceEEE-----ecCCHHHHHHHHHhccCCCCEEEEEeCcc
Confidence                         1477899999975     68999999999999999999999988874

>d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Chalcone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=99.57  E-value=1.8e-14  Score=124.45  Aligned_cols=159  Identities=16%  Similarity=0.188  Sum_probs=109.7

Q ss_pred             HHHcccC-CCCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHH--Hh---cC--CCCCCCCceEEEeCc
Q 019861          168 LMKGYLK-PVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEF--VQ---QE--SNFPKDSIDAVHAGA  239 (334)
Q Consensus       168 ~l~~~l~-~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~--~~---~~--~~~~~~~fD~V~~~~  239 (334)
                      .+.+.+. .....+|||||||+|.++..++++.|..+++.+|+ +..++.+...  +.   .+  .+.|  ..|+|++.+
T Consensus        71 ~l~~~~~~f~~~~~vlDiGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~~~~~~ri~~~~gd~~~~~p--~~D~~~l~~  147 (244)
T d1fp1d2          71 RMLEIYTGFEGISTLVDVGGGSGRNLELIISKYPLIKGINFDL-PQVIENAPPLSGIEHVGGDMFASVP--QGDAMILKA  147 (244)
T ss_dssp             HHHHHCCTTTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCCCTTEEEEECCTTTCCC--CEEEEEEES
T ss_pred             HHHHhcccccCCcEEEEecCCCcHHHHHHHHHCCCCeEEEecc-hhhhhccCCCCCeEEecCCcccccc--cceEEEEeh
Confidence            3344344 24457999999999999999999999999999997 4444322210  00   00  1233  459999999


Q ss_pred             cccCCCCHH--HHHHHHHHcccCCcEEEEEEeccCCCCCchHH---HHHHHHHhhhhcCccCCCCHHHHHHHHHhCCCcE
Q 019861          240 AIHCWSSPS--TGVAEISRVLRPGGVFVGTTYIVDGPFNLIPF---SRLLRQNMMQISGSYTFLSEREIEDLCRACGLVD  314 (334)
Q Consensus       240 vl~h~~d~~--~~L~~i~r~LkpgG~lii~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~t~~~l~~ll~~~Gf~~  314 (334)
                      +||+++|..  .+|+++++.|+|||++++.+...+........   ...+...+.... ....+|.++|.++++++||+.
T Consensus       148 vLh~~~de~~~~iL~~~~~aL~pgg~llI~e~v~~~~~~~~~~~~~~~~~d~~m~~~~-~g~ert~~e~~~ll~~AGF~~  226 (244)
T d1fp1d2         148 VCHNWSDEKCIEFLSNCHKALSPNGKVIIVEFILPEEPNTSEESKLVSTLDNLMFITV-GGRERTEKQYEKLSKLSGFSK  226 (244)
T ss_dssp             SGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEECSSCCSSHHHHHHHHHHHHHHHHH-SCCCEEHHHHHHHHHHTTCSE
T ss_pred             hhhhCCHHHHHHHHHHHHHHcCCCcEEEEEEEEecCCCCCchHHHHHHHHHHHHHhhC-CCcCCCHHHHHHHHHHcCCCc
Confidence            999999764  78999999999999999999876433222221   111111111111 234568999999999999999


Q ss_pred             EEEe--ecCcEEEEEEEc
Q 019861          315 FKCT--RNRGFVMFTATK  330 (334)
Q Consensus       315 v~~~--~~g~~~~~~a~K  330 (334)
                      +++.  ..+.+.++.++|
T Consensus       227 v~v~~~~~~~~~viE~~K  244 (244)
T d1fp1d2         227 FQVACRAFNSLGVMEFYK  244 (244)
T ss_dssp             EEEEEEETTTEEEEEEEC
T ss_pred             eEEEecCCCCEEEEEEeC
Confidence            9864  346778888887

>d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.55  E-value=2.6e-14  Score=120.64  Aligned_cols=97  Identities=16%  Similarity=0.072  Sum_probs=78.1

Q ss_pred             ccCCCCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCC------------CCCCC---CceEEE
Q 019861          172 YLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES------------NFPKD---SIDAVH  236 (334)
Q Consensus       172 ~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~------------~~~~~---~fD~V~  236 (334)
                      .+...|+.+|||+|||+|.++..+++..+.++|+|+|+++.+++.++++.....            .....   .+|+| 
T Consensus        51 ~l~lkpg~~VLDlGcG~G~~~~~la~~v~~g~V~gvDis~~~i~~a~~~a~~~~ni~~i~~d~~~~~~~~~~~~~vd~v-  129 (209)
T d1nt2a_          51 RLKLRGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRERNNIIPLLFDASKPWKYSGIVEKVDLI-  129 (209)
T ss_dssp             CCCCCSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHCSSEEEECSCTTCGGGTTTTCCCEEEE-
T ss_pred             cCCCCCCCEEEEeCCcCCHHHHHHHHhccCCeEEEEeCCHHHHHHHHHHhhccCCceEEEeeccCccccccccceEEEE-
Confidence            456778999999999999999999998777799999999999999988765432            11122   34444 


Q ss_pred             eCccccCCCCHHHHHHHHHHcccCCcEEEEEEec
Q 019861          237 AGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYI  270 (334)
Q Consensus       237 ~~~vl~h~~d~~~~L~~i~r~LkpgG~lii~~~~  270 (334)
                       .+.+.|..++..+++++.++|||||.+++.+..
T Consensus       130 -~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~  162 (209)
T d1nt2a_         130 -YQDIAQKNQIEILKANAEFFLKEKGEVVIMVKA  162 (209)
T ss_dssp             -EECCCSTTHHHHHHHHHHHHEEEEEEEEEEEEH
T ss_pred             -EecccChhhHHHHHHHHHHHhccCCeEEEEEEc
Confidence             345777788899999999999999999998754

>d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Thermotoga maritima [TaxId: 2336]

Probab=99.49  E-value=5e-14  Score=119.33  Aligned_cols=97  Identities=15%  Similarity=0.232  Sum_probs=80.4

Q ss_pred             HHHHHcccCCCCCCcEEEECCCcCHHHHHHHHc-CCCCeEEEEeCCHHHHHHHHHHHhcCC--------------CCCCC
Q 019861          166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQQES--------------NFPKD  230 (334)
Q Consensus       166 ~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~~v~giD~s~~~~~~a~~~~~~~~--------------~~~~~  230 (334)
                      ...+.+.+...++.+|||||||+|.++..+++. ++...|+++|+++.+++.|++++....              ...++
T Consensus        64 ~a~~l~~l~l~~g~~VLdiG~GtG~~s~~la~~~~~~g~V~~id~~~~~~~~a~~~~~~~~~~n~~~~~~d~~~~~~~~~  143 (213)
T d1dl5a1          64 MALFMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIENVIFVCGDGYYGVPEFS  143 (213)
T ss_dssp             HHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGC
T ss_pred             hHHHHHhhhccccceEEEecCccchhHHHHHHHhCCCCcEEEeecchhhHHHhhhhHhhhcccccccccCchHHcccccc
Confidence            345667778888999999999999999999876 556799999999999999999876432              23457


Q ss_pred             CceEEEeCccccCCCCHHHHHHHHHHcccCCcEEEEEE
Q 019861          231 SIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTT  268 (334)
Q Consensus       231 ~fD~V~~~~vl~h~~d~~~~L~~i~r~LkpgG~lii~~  268 (334)
                      +||+|++..+++|+++      ++.+.|||||++++..
T Consensus       144 ~fD~I~~~~~~~~~p~------~l~~~LkpGG~lv~pv  175 (213)
T d1dl5a1         144 PYDVIFVTVGVDEVPE------TWFTQLKEGGRVIVPI  175 (213)
T ss_dssp             CEEEEEECSBBSCCCH------HHHHHEEEEEEEEEEB
T ss_pred             chhhhhhhccHHHhHH------HHHHhcCCCcEEEEEE
Confidence            8999999999999864      4678899999998854

>d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein FLJ20628
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.45  E-value=9.3e-14  Score=124.43  Aligned_cols=110  Identities=17%  Similarity=0.210  Sum_probs=87.9

Q ss_pred             cCCCCcHHHHHHHHcccCCCCCCcEEEECCCcCHHHHHHHHc-CCCCeEEEEeCCHHHHHHHHHHHhcCC----------
Q 019861          157 GGFPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQQES----------  225 (334)
Q Consensus       157 ~~~~~~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~~v~giD~s~~~~~~a~~~~~~~~----------  225 (334)
                      ....-..+....+..++...+|.+|||+|||+|.++..|+.. ++.++|+++|+++.+++.|++++....          
T Consensus        78 ~tqiiypkD~~~Il~~l~i~pG~rVLE~GtGsG~lt~~LAr~vg~~G~V~t~E~~~~~~~~A~~n~~~~~~~~~~~~~~~  157 (324)
T d2b25a1          78 GTAITFPKDINMILSMMDINPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEE  157 (324)
T ss_dssp             SSCCCCHHHHHHHHHHHTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSC
T ss_pred             CCcccccccHHHHHHHhCCCCCCEEEEecccccHHHHHHHHHhCCCcEEEEecCCHHHHHHHHHHHHHhhhhhhhhhhhc
Confidence            334445566678888899999999999999999999999887 677899999999999999998765210          


Q ss_pred             -----------------CCCCCCceEEEeCccccCCCCHHHHHHHHHHcccCCcEEEEEEecc
Q 019861          226 -----------------NFPKDSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIV  271 (334)
Q Consensus       226 -----------------~~~~~~fD~V~~~~vl~h~~d~~~~L~~i~r~LkpgG~lii~~~~~  271 (334)
                                       .+++..||.|++     ++++|..+|.++.++|||||++++..|+.
T Consensus       158 ~~~nv~~~~~di~~~~~~~~~~~fD~V~L-----D~p~P~~~l~~~~~~LKpGG~lv~~~P~i  215 (324)
T d2b25a1         158 WPDNVDFIHKDISGATEDIKSLTFDAVAL-----DMLNPHVTLPVFYPHLKHGGVCAVYVVNI  215 (324)
T ss_dssp             CCCCEEEEESCTTCCC-------EEEEEE-----CSSSTTTTHHHHGGGEEEEEEEEEEESSH
T ss_pred             cccceeEEecchhhcccccCCCCcceEee-----cCcCHHHHHHHHHHhccCCCEEEEEeCCH
Confidence                             123567999876     57899999999999999999999988764

>d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Isoflavone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=99.43  E-value=4.9e-13  Score=115.35  Aligned_cols=149  Identities=14%  Similarity=0.140  Sum_probs=102.2

Q ss_pred             CCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHH--Hh---cCCCCCCCCceEEEeCccccCCCCHH--HH
Q 019861          178 GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEF--VQ---QESNFPKDSIDAVHAGAAIHCWSSPS--TG  250 (334)
Q Consensus       178 ~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~--~~---~~~~~~~~~fD~V~~~~vl~h~~d~~--~~  250 (334)
                      ..+|||||||+|.++..+++++|..++++.|+ +..++.+...  +.   .+---+...+|++++.++||+++|..  .+
T Consensus        81 ~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~~~~~~rv~~~~gD~f~~~p~aD~~~l~~vLHdw~d~~~~~i  159 (244)
T d1fp2a2          81 LESIVDVGGGTGTTAKIICETFPKLKCIVFDR-PQVVENLSGSNNLTYVGGDMFTSIPNADAVLLKYILHNWTDKDCLRI  159 (244)
T ss_dssp             CSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCCBTTEEEEECCTTTCCCCCSEEEEESCGGGSCHHHHHHH
T ss_pred             ceEEEEecCCccHHHHHHHHhCCCCeEEEecC-HHHHHhCcccCceEEEecCcccCCCCCcEEEEEeecccCChHHHHHH
Confidence            46899999999999999999999999999998 4444433210  00   00001223589999999999999875  78


Q ss_pred             HHHHHHcccCC---cEEEEEEeccCCCCCchHHH--HHHHHHhhhhcCccCCCCHHHHHHHHHhCCCcEEEEee-cCcEE
Q 019861          251 VAEISRVLRPG---GVFVGTTYIVDGPFNLIPFS--RLLRQNMMQISGSYTFLSEREIEDLCRACGLVDFKCTR-NRGFV  324 (334)
Q Consensus       251 L~~i~r~Lkpg---G~lii~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~t~~~l~~ll~~~Gf~~v~~~~-~g~~~  324 (334)
                      |+++++.|+||   |++++.+...+.........  ..+....... ......|.++|+++++++||+++++.. .+...
T Consensus       160 L~~~~~al~pgg~~~~lli~e~~~~~~~~~~~~~~~~~~~dl~m~~-~~G~ert~~e~~~ll~~AGf~~~~i~~~~~~~s  238 (244)
T d1fp2a2         160 LKKCKEAVTNDGKRGKVTIIDMVIDKKKDENQVTQIKLLMDVNMAC-LNGKERNEEEWKKLFIEAGFQHYKISPLTGFLS  238 (244)
T ss_dssp             HHHHHHHHSGGGCCCEEEEEECEECTTTSCHHHHHHHHHHHHHGGG-GTCCCEEHHHHHHHHHHTTCCEEEEEEEETTEE
T ss_pred             HHHHHHHcCcccCCcEEEEEEeecCCCCCCchHHHHHHHHHHHHHh-CCCcCCCHHHHHHHHHHcCCceEEEEECCCCeE
Confidence            99999999998   78888887765432222111  1111111111 133567999999999999999998654 34555


Q ss_pred             EEEE
Q 019861          325 MFTA  328 (334)
Q Consensus       325 ~~~a  328 (334)
                      ++.+
T Consensus       239 vIE~  242 (244)
T d1fp2a2         239 LIEI  242 (244)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            5544

>d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Bacillus subtilis [TaxId: 1423]

Probab=99.43  E-value=3.9e-13  Score=112.69  Aligned_cols=91  Identities=15%  Similarity=0.112  Sum_probs=78.2

Q ss_pred             CCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCC----------------CCCCCCceEEEeCccc
Q 019861          178 GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES----------------NFPKDSIDAVHAGAAI  241 (334)
Q Consensus       178 ~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~----------------~~~~~~fD~V~~~~vl  241 (334)
                      ...|||||||+|.++..+++..|...++|+|+++.++..+.++.....                .++++++|.|++.+..
T Consensus        30 ~PlvLeIGcG~G~~~~~lA~~~p~~~~iGiD~~~~~i~~a~~~~~~~~l~Nv~~~~~Da~~l~~~~~~~~~d~v~i~fp~  109 (204)
T d2fcaa1          30 NPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDADTLTDVFEPGEVKRVYLNFSD  109 (204)
T ss_dssp             CCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSCCSSEEEECCCGGGHHHHCCTTSCCEEEEESCC
T ss_pred             CceEEEEEecCcHHHHHHHHhCCCCcEEEeecchHHHHHHHHHHHHHhccCchhcccchhhhhcccCchhhhcccccccc
Confidence            348999999999999999999999999999999999999988765432                2678999999998877


Q ss_pred             cCCCCH--------HHHHHHHHHcccCCcEEEEEE
Q 019861          242 HCWSSP--------STGVAEISRVLRPGGVFVGTT  268 (334)
Q Consensus       242 ~h~~d~--------~~~L~~i~r~LkpgG~lii~~  268 (334)
                      .|....        ..+|++++++|||||.|++.+
T Consensus       110 P~~k~~h~k~Rl~~~~~l~~~~r~LkpgG~l~i~T  144 (204)
T d2fcaa1         110 PWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKT  144 (204)
T ss_dssp             CCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEE
T ss_pred             ccchhhhcchhhhHHHHHHHHHHhCCCCcEEEEEE
Confidence            665543        378999999999999999976

>d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.41  E-value=4.9e-13  Score=113.86  Aligned_cols=97  Identities=23%  Similarity=0.365  Sum_probs=77.7

Q ss_pred             HHHccc--CCCCCCcEEEECCCcCHHHHHHHHc-CCCCeEEEEeCCHHHHHHHHHHHhcC-------------------C
Q 019861          168 LMKGYL--KPVLGGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQQE-------------------S  225 (334)
Q Consensus       168 ~l~~~l--~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~~v~giD~s~~~~~~a~~~~~~~-------------------~  225 (334)
                      .+.+.+  ...++.+|||||||+|+.+..+++. ++..+|+++|+++.+++.|++++...                   .
T Consensus        65 ~~le~L~~~l~~g~~VLdiG~GsGy~ta~la~l~~~~g~V~~ie~~~~l~~~a~~~l~~~~~~~~~~~~~~~~~gD~~~~  144 (224)
T d1i1na_          65 YALELLFDQLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMG  144 (224)
T ss_dssp             HHHHHTTTTSCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGC
T ss_pred             HHHHHHhhccCCCCeEEEecCCCCHHHHHHHHHhCCCceEEEEcCCHHHHHHHHHhccccCcccccccceEEEEeecccc
Confidence            444444  4567899999999999999888875 56679999999999999999876531                   1


Q ss_pred             CCCCCCceEEEeCccccCCCCHHHHHHHHHHcccCCcEEEEEEec
Q 019861          226 NFPKDSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYI  270 (334)
Q Consensus       226 ~~~~~~fD~V~~~~vl~h~~d~~~~L~~i~r~LkpgG~lii~~~~  270 (334)
                      ..++++||+|++..+++|+++      ++.+.|||||++++....
T Consensus       145 ~~~~~~fD~I~~~~~~~~ip~------~l~~~LkpGG~LV~pv~~  183 (224)
T d1i1na_         145 YAEEAPYDAIHVGAAAPVVPQ------ALIDQLKPGGRLILPVGP  183 (224)
T ss_dssp             CGGGCCEEEEEECSBBSSCCH------HHHHTEEEEEEEEEEESC
T ss_pred             cchhhhhhhhhhhcchhhcCH------HHHhhcCCCcEEEEEEcc
Confidence            344678999999999999864      477899999999986543

>d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=99.39  E-value=6.3e-13  Score=114.72  Aligned_cols=146  Identities=15%  Similarity=0.170  Sum_probs=99.5

Q ss_pred             CCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHh-----cC--CCCCCCCceEEEeCccccCCCCH--H
Q 019861          178 GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQ-----QE--SNFPKDSIDAVHAGAAIHCWSSP--S  248 (334)
Q Consensus       178 ~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~-----~~--~~~~~~~fD~V~~~~vl~h~~d~--~  248 (334)
                      ..+|||||||+|.++..++++.|..+++++|+.. .++.+.....     .+  .+.|  ..|++++.+++|++++.  .
T Consensus        82 ~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~-vi~~~~~~~r~~~~~~d~~~~~P--~ad~~~l~~vlh~~~d~~~~  158 (243)
T d1kyza2          82 LKSLVDVGGGTGAVINTIVSKYPTIKGINFDLPH-VIEDAPSYPGVEHVGGDMFVSIP--KADAVFMKWICHDWSDEHCL  158 (243)
T ss_dssp             CSEEEEETCTTSHHHHHHHHHCTTSEEEEEECTT-TTTTCCCCTTEEEEECCTTTCCC--CCSCEECSSSSTTSCHHHHH
T ss_pred             CcEEEEecCCCcHHHHHHHHHCCCCeEEEcccHH-hhhhcccCCceEEecccccccCC--CcceEEEEEEeecCCHHHHH
Confidence            5689999999999999999999999999999854 3332221100     00  1233  46888999999999865  5


Q ss_pred             HHHHHHHHcccCCcEEEEEEeccCCCCCc--hHHHH-HHHHHhhhhcCccCCCCHHHHHHHHHhCCCcEEEEee-cCcEE
Q 019861          249 TGVAEISRVLRPGGVFVGTTYIVDGPFNL--IPFSR-LLRQNMMQISGSYTFLSEREIEDLCRACGLVDFKCTR-NRGFV  324 (334)
Q Consensus       249 ~~L~~i~r~LkpgG~lii~~~~~~~~~~~--~~~~~-~~~~~~~~~~~~~~~~t~~~l~~ll~~~Gf~~v~~~~-~g~~~  324 (334)
                      .+|++++++|+|||++++.+.........  .+... .+...+..........+.++++++++++||+++++.. .+..+
T Consensus       159 ~iL~~~~~al~pgg~~li~d~~~~~~~~~~~~~~~~~~~d~~ml~~~~~g~ert~~e~~~ll~~AGf~~vkv~~~~~~~~  238 (243)
T d1kyza2         159 KFLKNCYEALPDNGKVIVAECILPVAPDSSLATKGVVHIDVIMLAHNPGGKERTQKEFEDLAKGAGFQGFKVHCNAFNTY  238 (243)
T ss_dssp             HHHHHHHHHCCSSSCEEEEECEECSSCCCCHHHHHHHHHHHHHHHHCSSCCCEEHHHHHHHHHHHCCSCEEEEEEETTEE
T ss_pred             HHHHHHHHhcCCCceEEEEEEEecCCCCCchhhHHHHHHHHHHHhhCCCCCcCCHHHHHHHHHHcCCCcEEEEEeCCCCE
Confidence            89999999999999999988765432211  11111 1111111112233456899999999999999999763 33344


Q ss_pred             EE
Q 019861          325 MF  326 (334)
Q Consensus       325 ~~  326 (334)
                      ++
T Consensus       239 vi  240 (243)
T d1kyza2         239 IM  240 (243)
T ss_dssp             EE
T ss_pred             EE
Confidence            43

>d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Sulfolobus tokodaii [TaxId: 111955]

Probab=99.35  E-value=1.5e-12  Score=110.52  Aligned_cols=93  Identities=17%  Similarity=0.221  Sum_probs=77.5

Q ss_pred             HHHcccCCCCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCC------------CCCCCCceEE
Q 019861          168 LMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES------------NFPKDSIDAV  235 (334)
Q Consensus       168 ~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~------------~~~~~~fD~V  235 (334)
                      .+.+.+...++.+|||||||+|+++..++....  +|+++|+++..++.|++++....            ....++||+|
T Consensus        61 ~ml~~L~l~~g~~VLdIG~GsGy~ta~La~l~~--~V~aiE~~~~~~~~A~~~~~~~~nv~~~~~d~~~g~~~~~pfD~I  138 (224)
T d1vbfa_          61 FMLDELDLHKGQKVLEIGTGIGYYTALIAEIVD--KVVSVEINEKMYNYASKLLSYYNNIKLILGDGTLGYEEEKPYDRV  138 (224)
T ss_dssp             HHHHHTTCCTTCEEEEECCTTSHHHHHHHHHSS--EEEEEESCHHHHHHHHHHHTTCSSEEEEESCGGGCCGGGCCEEEE
T ss_pred             HHHHHhhhcccceEEEecCCCCHHHHHHHHHhc--ccccccccHHHHHHHHHHHhcccccccccCchhhcchhhhhHHHH
Confidence            456677888899999999999999999998875  99999999999999998866432            1235789999


Q ss_pred             EeCccccCCCCHHHHHHHHHHcccCCcEEEEEE
Q 019861          236 HAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTT  268 (334)
Q Consensus       236 ~~~~vl~h~~d~~~~L~~i~r~LkpgG~lii~~  268 (334)
                      ++..+++++++      .+.+.|+|||+|++-.
T Consensus       139 iv~~a~~~ip~------~l~~qLk~GGrLV~pv  165 (224)
T d1vbfa_         139 VVWATAPTLLC------KPYEQLKEGGIMILPI  165 (224)
T ss_dssp             EESSBBSSCCH------HHHHTEEEEEEEEEEE
T ss_pred             HhhcchhhhhH------HHHHhcCCCCEEEEEE
Confidence            99999998864      3667899999998843

>d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=99.31  E-value=7e-12  Score=104.91  Aligned_cols=92  Identities=17%  Similarity=0.134  Sum_probs=73.9

Q ss_pred             CCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCC----------------CCCCCCceEEEeCccc
Q 019861          178 GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES----------------NFPKDSIDAVHAGAAI  241 (334)
Q Consensus       178 ~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~----------------~~~~~~fD~V~~~~vl  241 (334)
                      ...|||||||+|.++..+++..|...++|+|+++.++..|.++.....                .++++++|.|++.+.-
T Consensus        32 ~plvLdIGcG~G~~~~~lA~~~p~~~~iGid~~~~~v~~a~~~~~~~~l~Ni~~~~~da~~l~~~~~~~~~~~i~i~fPd  111 (204)
T d1yzha1          32 NPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDGSDLTDYFEDGEIDRLYLNFSD  111 (204)
T ss_dssp             CCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCSSEEEEECCSSCGGGTSCTTCCSEEEEESCC
T ss_pred             CCeEEEEeccCCHHHHHHHHHCCCCceEEEeccHHHHHHHHHhhhhhccccceeeecCHHHHhhhccCCceehhcccccc
Confidence            348999999999999999999999999999999999999887654321                3678899999865533


Q ss_pred             cCCCCH--------HHHHHHHHHcccCCcEEEEEEe
Q 019861          242 HCWSSP--------STGVAEISRVLRPGGVFVGTTY  269 (334)
Q Consensus       242 ~h~~d~--------~~~L~~i~r~LkpgG~lii~~~  269 (334)
                      .+....        ..+|+.+.++|+|||.+++.+-
T Consensus       112 Pw~K~~h~krRl~~~~~l~~~~~~LkpgG~l~i~TD  147 (204)
T d1yzha1         112 PWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKTD  147 (204)
T ss_dssp             CCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEES
T ss_pred             cccchhhhhhhhhHHHHHHHHHHhCCCCcEEEEEEC
Confidence            222211        5789999999999999998763

>d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.29  E-value=9.9e-13  Score=118.44  Aligned_cols=106  Identities=11%  Similarity=0.058  Sum_probs=81.8

Q ss_pred             HHHHHHHcccCCCCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcC-----------C-------
Q 019861          164 KEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQE-----------S-------  225 (334)
Q Consensus       164 ~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~-----------~-------  225 (334)
                      .....+.+.++..++.+|||||||+|.++..++...+..+++|+|+++.+++.|++.....           .       
T Consensus       138 ~~~~~~~~~~~l~~~~~vlD~GcG~G~~~~~~a~~~~~~~~~Gid~s~~~~~~a~~~~~~~~~~~~~~g~~~~~i~~~~g  217 (328)
T d1nw3a_         138 DLVAQMIDEIKMTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERG  217 (328)
T ss_dssp             HHHHHHHHHSCCCTTCEEEEETCTTSHHHHHHHHHCCCSEEEEEECSHHHHHHHHHHHHHHHHHHHHHTCCCCCEEEEEC
T ss_pred             HHHHHHHHHcCCCCCCEEEEcCCCCCHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHhhhccccCCceEEEEC
Confidence            4455666777888899999999999999999988766668999999999999998754321           1       


Q ss_pred             CCC-----CCC--ceEEEeCccccCCCCHHHHHHHHHHcccCCcEEEEEEec
Q 019861          226 NFP-----KDS--IDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYI  270 (334)
Q Consensus       226 ~~~-----~~~--fD~V~~~~vl~h~~d~~~~L~~i~r~LkpgG~lii~~~~  270 (334)
                      .+.     +..  .|+|++ +.+.|.++....|.++.+.|||||++++..+.
T Consensus       218 d~~~~~~~~~~~~advi~~-~~~~f~~~~~~~l~e~~r~LKpGg~iv~~~~~  268 (328)
T d1nw3a_         218 DFLSEEWRERIANTSVIFV-NNFAFGPEVDHQLKERFANMKEGGRIVSSKPF  268 (328)
T ss_dssp             CTTSHHHHHHHHHCSEEEE-CCTTTCHHHHHHHHHHHTTCCTTCEEEESSCS
T ss_pred             cccccccccccCcceEEEE-cceecchHHHHHHHHHHHhCCCCcEEEEeccc
Confidence            111     112  366666 45667788889999999999999999886543

>d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.26  E-value=5.3e-12  Score=115.75  Aligned_cols=106  Identities=10%  Similarity=0.026  Sum_probs=83.2

Q ss_pred             HHHHHHHcccCCCCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcC-------------------
Q 019861          164 KEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQE-------------------  224 (334)
Q Consensus       164 ~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~-------------------  224 (334)
                      .....+.+.++..++.++||||||.|..+..++...+..+++|+|+++.+++.|+++....                   
T Consensus       203 ~~i~~Il~~l~Lkpgd~fLDLGCG~G~~vl~aA~~~g~~~v~GIDiS~~~i~~Ak~~~~e~~~~~~~~g~~~~~~~~~~~  282 (406)
T d1u2za_         203 NFLSDVYQQCQLKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSLK  282 (406)
T ss_dssp             HHHHHHHHHTTCCTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEES
T ss_pred             HHHHHHHHHhCCCCCCEEEeCCCCCcHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHHhhhhhhhccccccceeeee
Confidence            4566677778888899999999999999999998865568999999999999999765421                   


Q ss_pred             CCCC--------CCCceEEEeCccccCCCCHHHHHHHHHHcccCCcEEEEEEec
Q 019861          225 SNFP--------KDSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYI  270 (334)
Q Consensus       225 ~~~~--------~~~fD~V~~~~vl~h~~d~~~~L~~i~r~LkpgG~lii~~~~  270 (334)
                      ..+.        -..+|+|++.. +.|.++....|.++.+.|||||+++.....
T Consensus       283 ~~f~~~~~~d~~~~~adVV~inn-~~f~~~l~~~L~ei~r~LKPGGrIVs~~~~  335 (406)
T d1u2za_         283 KSFVDNNRVAELIPQCDVILVNN-FLFDEDLNKKVEKILQTAKVGCKIISLKSL  335 (406)
T ss_dssp             SCSTTCHHHHHHGGGCSEEEECC-TTCCHHHHHHHHHHHTTCCTTCEEEESSCS
T ss_pred             echhhccccccccccceEEEEec-ccCchHHHHHHHHHHHhcCCCcEEEEeccc
Confidence            1111        12467787754 557778889999999999999999886543

>d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N5-glutamine methyltransferase, HemK
domain: N5-glutamine methyltransferase, HemK
species: Escherichia coli [TaxId: 562]

Probab=99.26  E-value=4.3e-11  Score=104.27  Aligned_cols=125  Identities=12%  Similarity=0.084  Sum_probs=93.2

Q ss_pred             HHHHHHcccCCCCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCC-------------CCCCCC
Q 019861          165 EFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES-------------NFPKDS  231 (334)
Q Consensus       165 ~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~-------------~~~~~~  231 (334)
                      +.+....... ..+.+|||+|||+|..+..++...+..+++++|+|+.+++.|+++.....             ++++++
T Consensus        97 lv~~~l~~~~-~~~~~vlDlGtGSG~I~i~la~~~p~~~v~avDis~~Al~~A~~Na~~~~~~~v~~~~~d~~~~~~~~~  175 (274)
T d2b3ta1          97 LVEQALARLP-EQPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLAIKNIHILQSDWFSALAGQQ  175 (274)
T ss_dssp             HHHHHHHHSC-SSCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCSTTGGGTTCC
T ss_pred             hhhhHhhhhc-ccccceeeeehhhhHHHHHHHhhCCcceeeeccchhHHHhHHHHHHHHhCcccceeeecccccccCCCc
Confidence            3344444433 34578999999999999999999988999999999999999998865322             345679


Q ss_pred             ceEEEeC--c-----------cccCCCC------------HHHHHHHHHHcccCCcEEEEEEeccCCCCCchHHHHHHHH
Q 019861          232 IDAVHAG--A-----------AIHCWSS------------PSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQ  286 (334)
Q Consensus       232 fD~V~~~--~-----------vl~h~~d------------~~~~L~~i~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~  286 (334)
                      ||+|+++  +           ++.|-+.            ...++.++.+.|+|||.+++....                
T Consensus       176 fDlIvsNPPYi~~~~~~~~~~v~~~eP~~AL~~g~dGl~~~~~i~~~a~~~L~~~G~l~lEig~----------------  239 (274)
T d2b3ta1         176 FAMIVSNPPYIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLEHGW----------------  239 (274)
T ss_dssp             EEEEEECCCCBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEEECCS----------------
T ss_pred             eeEEEecchhhhhhhhcccccccccchhhhcccccccchHHHHHHHHHHHhcCCCCEEEEEECc----------------
Confidence            9999996  2           2333221            135788999999999999984321                


Q ss_pred             HhhhhcCccCCCCHHHHHHHHHhCCCcEEEE
Q 019861          287 NMMQISGSYTFLSEREIEDLCRACGLVDFKC  317 (334)
Q Consensus       287 ~~~~~~~~~~~~t~~~l~~ll~~~Gf~~v~~  317 (334)
                                 -..+.+.+++++.||..++.
T Consensus       240 -----------~q~~~v~~~l~~~gf~~i~~  259 (274)
T d2b3ta1         240 -----------QQGEAVRQAFILAGYHDVET  259 (274)
T ss_dssp             -----------SCHHHHHHHHHHTTCTTCCE
T ss_pred             -----------hHHHHHHHHHHHCCCCeEEE
Confidence                       13568899999999976653

>d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Arginine methyltransferase, HMT1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.24  E-value=1e-11  Score=111.69  Aligned_cols=88  Identities=23%  Similarity=0.330  Sum_probs=69.9

Q ss_pred             CCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCC---------------CCCCCCceEEEeCcc
Q 019861          176 VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES---------------NFPKDSIDAVHAGAA  240 (334)
Q Consensus       176 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~---------------~~~~~~fD~V~~~~v  240 (334)
                      .++++|||||||+|.++..+++.|. .+|+|+|.++ +++.|++......               ++++++||+|++..+
T Consensus        37 ~~~~~VLDlGcGtG~ls~~aa~~Ga-~~V~avd~s~-~~~~a~~~~~~~~~~~~i~~i~~~~~~l~~~~~~~D~i~se~~  114 (328)
T d1g6q1_          37 FKDKIVLDVGCGTGILSMFAAKHGA-KHVIGVDMSS-IIEMAKELVELNGFSDKITLLRGKLEDVHLPFPKVDIIISEWM  114 (328)
T ss_dssp             HTTCEEEEETCTTSHHHHHHHHTCC-SEEEEEESST-HHHHHHHHHHHTTCTTTEEEEESCTTTSCCSSSCEEEEEECCC
T ss_pred             CCcCEEEEeCCCCCHHHHHHHHhCC-CEEEEEeCCH-HHHHHHHHHHHhCccccceEEEeehhhccCcccceeEEEEEec
Confidence            3578999999999999999999874 5899999986 5667766544321               466789999999655


Q ss_pred             cc---CCCCHHHHHHHHHHcccCCcEEE
Q 019861          241 IH---CWSSPSTGVAEISRVLRPGGVFV  265 (334)
Q Consensus       241 l~---h~~d~~~~L~~i~r~LkpgG~li  265 (334)
                      .+   +......++.++.++|||||.++
T Consensus       115 ~~~~~~e~~~~~~~~a~~r~LkpgG~ii  142 (328)
T d1g6q1_         115 GYFLLYESMMDTVLYARDHYLVEGGLIF  142 (328)
T ss_dssp             BTTBSTTCCHHHHHHHHHHHEEEEEEEE
T ss_pred             ceeeccchhHHHHHHHHHhccCCCeEEE
Confidence            54   44567789999999999999885

>d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 3, PRMT3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.18  E-value=5.4e-11  Score=106.09  Aligned_cols=98  Identities=17%  Similarity=0.224  Sum_probs=73.3

Q ss_pred             HHHcccCCCCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcC--------------CCCCCCCce
Q 019861          168 LMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQE--------------SNFPKDSID  233 (334)
Q Consensus       168 ~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~--------------~~~~~~~fD  233 (334)
                      .+.+.....++++|||||||+|.++..+++.|. .+|+|+|.++.+....+......              .++++++||
T Consensus        26 ai~~~~~~~~~~~VLDiGcG~G~lsl~aa~~Ga-~~V~aid~s~~~~~a~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~D  104 (311)
T d2fyta1          26 FIYQNPHIFKDKVVLDVGCGTGILSMFAAKAGA-KKVLGVDQSEILYQAMDIIRLNKLEDTITLIKGKIEEVHLPVEKVD  104 (311)
T ss_dssp             HHHHCGGGTTTCEEEEETCTTSHHHHHHHHTTC-SEEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTTTSCCSCSCEE
T ss_pred             HHHhccccCCcCEEEEECCCCCHHHHHHHHcCC-CEEEEEeCHHHHHHHHHHHHHhCCCccceEEEeeHHHhcCccccce
Confidence            444444445688999999999999999999885 58999999998765444322211              145678999


Q ss_pred             EEEeCccccCCC---CHHHHHHHHHHcccCCcEEEE
Q 019861          234 AVHAGAAIHCWS---SPSTGVAEISRVLRPGGVFVG  266 (334)
Q Consensus       234 ~V~~~~vl~h~~---d~~~~L~~i~r~LkpgG~lii  266 (334)
                      +|++....+++.   .+..++....+.|+|||+++-
T Consensus       105 ~Ivse~~~~~~~~e~~~~~~~~a~~~~Lkp~G~iip  140 (311)
T d2fyta1         105 VIISEWMGYFLLFESMLDSVLYAKNKYLAKGGSVYP  140 (311)
T ss_dssp             EEEECCCBTTBTTTCHHHHHHHHHHHHEEEEEEEES
T ss_pred             EEEEeeeeeecccccccHHHHHHHHhcCCCCcEEec
Confidence            999976666654   345778888899999998874

>d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=99.16  E-value=5.5e-11  Score=100.02  Aligned_cols=97  Identities=16%  Similarity=0.191  Sum_probs=78.9

Q ss_pred             HHHHHcccCCCCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCC--------------CCCCCC
Q 019861          166 FELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES--------------NFPKDS  231 (334)
Q Consensus       166 ~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~--------------~~~~~~  231 (334)
                      ...+.+.+...++.+|||||||+|+.+..++... ..+|+++|.++.+++.+++++....              ....++
T Consensus        67 ~a~ml~~L~l~~g~~VLeIGsGsGY~taila~l~-g~~V~~ie~~~~l~~~a~~~l~~~g~~nv~~~~gd~~~g~~~~~p  145 (215)
T d1jg1a_          67 VAIMLEIANLKPGMNILEVGTGSGWNAALISEIV-KTDVYTIERIPELVEFAKRNLERAGVKNVHVILGDGSKGFPPKAP  145 (215)
T ss_dssp             HHHHHHHHTCCTTCCEEEECCTTSHHHHHHHHHH-CSCEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGCC
T ss_pred             HHHHHHhhccCccceEEEecCCCChhHHHHHHhh-CceeEEEeccHHHHHHHHHHHHHcCCceeEEEECccccCCcccCc
Confidence            3456677788889999999999999999988762 1379999999999999999876542              234678


Q ss_pred             ceEEEeCccccCCCCHHHHHHHHHHcccCCcEEEEEEe
Q 019861          232 IDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTY  269 (334)
Q Consensus       232 fD~V~~~~vl~h~~d~~~~L~~i~r~LkpgG~lii~~~  269 (334)
                      ||.|++...++++++.      +.+.|+|||++++...
T Consensus       146 fD~Iiv~~a~~~ip~~------l~~qL~~gGrLv~pv~  177 (215)
T d1jg1a_         146 YDVIIVTAGAPKIPEP------LIEQLKIGGKLIIPVG  177 (215)
T ss_dssp             EEEEEECSBBSSCCHH------HHHTEEEEEEEEEEEC
T ss_pred             ceeEEeecccccCCHH------HHHhcCCCCEEEEEEc
Confidence            9999999999987654      5668999999988543

>d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 1, PRMT1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.14  E-value=7.9e-11  Score=105.27  Aligned_cols=89  Identities=18%  Similarity=0.297  Sum_probs=68.9

Q ss_pred             CCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcC---------------CCCCCCCceEEEeCcc
Q 019861          176 VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQE---------------SNFPKDSIDAVHAGAA  240 (334)
Q Consensus       176 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~---------------~~~~~~~fD~V~~~~v  240 (334)
                      .++++|||||||+|.++..+++.|. .+|+|+|.++.+ ..+++.....               .+++.++||+|++...
T Consensus        32 ~~~~~VLDiGcG~G~ls~~aa~~Ga-~~V~avd~s~~~-~~a~~~~~~n~~~~~v~~~~~~~~~~~~~~~~~D~ivs~~~  109 (316)
T d1oria_          32 FKDKVVLDVGSGTGILCMFAAKAGA-RKVIGIECSSIS-DYAVKIVKANKLDHVVTIIKGKVEEVELPVEKVDIIISEWM  109 (316)
T ss_dssp             HTTCEEEEETCTTSHHHHHHHHTTC-SEEEEEECSTTH-HHHHHHHHHTTCTTTEEEEESCTTTCCCSSSCEEEEEECCC
T ss_pred             CCcCEEEEEecCCcHHHHHHHHhCC-CEEEEEcCcHHH-hhhhhHHHHhCCccccceEeccHHHcccccceeEEEeeeee
Confidence            3578999999999999999999874 489999999865 4444433221               1456789999998766


Q ss_pred             ccCCC---CHHHHHHHHHHcccCCcEEEE
Q 019861          241 IHCWS---SPSTGVAEISRVLRPGGVFVG  266 (334)
Q Consensus       241 l~h~~---d~~~~L~~i~r~LkpgG~lii  266 (334)
                      .+++.   ....++..+.++|+|||.++-
T Consensus       110 ~~~l~~e~~~~~~l~~~~r~Lkp~G~iiP  138 (316)
T d1oria_         110 GYCLFYESMLNTVLHARDKWLAPDGLIFP  138 (316)
T ss_dssp             BBTBTBTCCHHHHHHHHHHHEEEEEEEES
T ss_pred             eeeeccHHHHHHHHHHHHhcCCCCeEEEe
Confidence            55553   567899999999999998873

>d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.12  E-value=7.9e-11  Score=99.72  Aligned_cols=96  Identities=22%  Similarity=0.366  Sum_probs=73.5

Q ss_pred             HHHccc--CCCCCCcEEEECCCcCHHHHHHHHc----C--CCCeEEEEeCCHHHHHHHHHHHhcC---------------
Q 019861          168 LMKGYL--KPVLGGNIIDASCGSGLFSRIFAKS----G--LFSLVVALDYSENMLKQCYEFVQQE---------------  224 (334)
Q Consensus       168 ~l~~~l--~~~~~~~vLDiGcG~G~~~~~l~~~----~--~~~~v~giD~s~~~~~~a~~~~~~~---------------  224 (334)
                      .+.+.+  ...++.+|||||||+|+++..++..    +  ...+|+++|.++.+++.+++++...               
T Consensus        69 ~~l~~L~~~l~~g~~VLeIGtGsGY~ta~la~l~g~~g~~~~~~V~~iE~~~~l~~~a~~~l~~~~~~~~~~~nv~~~~~  148 (223)
T d1r18a_          69 FALEYLRDHLKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEG  148 (223)
T ss_dssp             HHHHHTTTTCCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEES
T ss_pred             HHHHHHhhccCCCCeEEEecCCCCHHHHHHHHHhhhccCCcccEEEEEecCHHHHHHHHHhhhhcchhhcCccEEEEEec
Confidence            344444  4567899999999999998888765    1  2348999999999999998764321               


Q ss_pred             ----CCCCCCCceEEEeCccccCCCCHHHHHHHHHHcccCCcEEEEEEe
Q 019861          225 ----SNFPKDSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTY  269 (334)
Q Consensus       225 ----~~~~~~~fD~V~~~~vl~h~~d~~~~L~~i~r~LkpgG~lii~~~  269 (334)
                          ...+.++||.|++..+++++++      .+.+.|+|||++++...
T Consensus       149 d~~~~~~~~~~fD~Iiv~~a~~~~p~------~l~~~Lk~gG~lV~pvg  191 (223)
T d1r18a_         149 DGRKGYPPNAPYNAIHVGAAAPDTPT------ELINQLASGGRLIVPVG  191 (223)
T ss_dssp             CGGGCCGGGCSEEEEEECSCBSSCCH------HHHHTEEEEEEEEEEES
T ss_pred             ccccccccccceeeEEEEeechhchH------HHHHhcCCCcEEEEEEe
Confidence                1234678999999999998864      36789999999988544

>d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: MraW-like putative methyltransferases
domain: TM0872, methyltransferase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=99.07  E-value=1e-10  Score=96.55  Aligned_cols=104  Identities=18%  Similarity=0.251  Sum_probs=83.2

Q ss_pred             HHHHcccCCCCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCC------------------CCC
Q 019861          167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES------------------NFP  228 (334)
Q Consensus       167 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~------------------~~~  228 (334)
                      +.+..++.+.++..+||++||+|..+..+.+..+.++++|+|.++.+++.+++++....                  .+.
T Consensus        13 ~evi~~l~~~~~~~~lD~t~G~Gghs~~il~~~~~~~vi~~D~d~~~l~~a~~~l~~~~~r~~~~~~~f~~~~~~~~~~~   92 (192)
T d1m6ya2          13 REVIEFLKPEDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEFSDRVSLFKVSYREADFLLKTLG   92 (192)
T ss_dssp             HHHHHHHCCCTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGGTTTEEEEECCGGGHHHHHHHTT
T ss_pred             HHHHHhhCCCCCCEEEEecCCCcHHHHHHHhcCCCCeEEEeechHHHHHHHHHhhccccccccchhHHHhhHHHHHHHcC
Confidence            45566777888999999999999999999998888899999999999999999876432                  133


Q ss_pred             CCCceEEEeCccc--c-------CCCCHHHHHHHHHHcccCCcEEEEEEec
Q 019861          229 KDSIDAVHAGAAI--H-------CWSSPSTGVAEISRVLRPGGVFVGTTYI  270 (334)
Q Consensus       229 ~~~fD~V~~~~vl--~-------h~~d~~~~L~~i~r~LkpgG~lii~~~~  270 (334)
                      .++||.|+....+  .       .+......|..+.++|+|||.+++.+..
T Consensus        93 ~~~vdgIl~DlGvSs~Qld~~~r~~~~~~~~L~~a~~~Lk~gG~l~ii~f~  143 (192)
T d1m6ya2          93 IEKVDGILMDLGVSTYQLKGENRELENLKEFLKKAEDLLNPGGRIVVISFH  143 (192)
T ss_dssp             CSCEEEEEEECSCCHHHHHTSHTHHHHHHHHHHHGGGGEEEEEEEEEEESS
T ss_pred             CCCcceeeeccchhHhhhhhhhccchhHHHHHHHHHHhcCCCCeeeeeccc
Confidence            5789999876443  1       1223357899999999999999987754

>d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Met-10+ protein-like
domain: Hypothetical protein PH0793
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.04  E-value=8.7e-10  Score=95.39  Aligned_cols=114  Identities=12%  Similarity=0.070  Sum_probs=86.1

Q ss_pred             CCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCC--------------CCCCCCceEEEeCcccc
Q 019861          177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES--------------NFPKDSIDAVHAGAAIH  242 (334)
Q Consensus       177 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~--------------~~~~~~fD~V~~~~vl~  242 (334)
                      ++.+|||+|||+|.++..++..+ .++|+++|+++.+++.+++++....              -.+++.||.|++..   
T Consensus       107 ~g~~VlD~~aG~G~~~l~~a~~~-~~~V~avd~n~~a~~~~~~N~~~n~l~~~v~~~~~D~~~~~~~~~~D~Ii~~~---  182 (260)
T d2frna1         107 PDELVVDMFAGIGHLSLPIAVYG-KAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPGENIADRILMGY---  182 (260)
T ss_dssp             TTCEEEETTCTTTTTHHHHHHHT-CCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCCCSCEEEEEECC---
T ss_pred             CccEEEECcceEcHHHHHHHHhC-CcEEEEecCCHHHHHHHHHHHHHhCCCceEEEEEcchHHhccCCCCCEEEECC---
Confidence            48899999999999999999886 3699999999999999998876432              12357899999763   


Q ss_pred             CCCCHHHHHHHHHHcccCCcEEEEEEeccCCCCCchHHHHHHHHHhhhhcCccCCCCHHHHHHHHHhCCCcEE
Q 019861          243 CWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLCRACGLVDF  315 (334)
Q Consensus       243 h~~d~~~~L~~i~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~l~~ll~~~Gf~~v  315 (334)
                       .+....+|.++.+.|++||++.+.......                    .......+.+.++.+..|+++.
T Consensus       183 -p~~~~~~l~~a~~~l~~gG~lh~~~~~~~~--------------------~~~~~~~e~~~~~~~~~g~~v~  234 (260)
T d2frna1         183 -VVRTHEFIPKALSIAKDGAIIHYHNTVPEK--------------------LMPREPFETFKRITKEYGYDVE  234 (260)
T ss_dssp             -CSSGGGGHHHHHHHEEEEEEEEEEEEEEGG--------------------GTTTTTHHHHHHHHHHTTCEEE
T ss_pred             -CCchHHHHHHHHhhcCCCCEEEEEeccccc--------------------cchhhHHHHHHHHHHHcCCceE
Confidence             224456788999999999998776544321                    1112345678888999999763

>d1af7a2 c.66.1.8 (A:92-284) Chemotaxis receptor methyltransferase CheR, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Chemotaxis receptor methyltransferase CheR, C-terminal domain
domain: Chemotaxis receptor methyltransferase CheR, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.03  E-value=1.9e-10  Score=95.29  Aligned_cols=90  Identities=13%  Similarity=0.128  Sum_probs=68.2

Q ss_pred             CCCcEEEECCCcCHH----HHHHHHc----CCCCeEEEEeCCHHHHHHHHHHH------------------hcC------
Q 019861          177 LGGNIIDASCGSGLF----SRIFAKS----GLFSLVVALDYSENMLKQCYEFV------------------QQE------  224 (334)
Q Consensus       177 ~~~~vLDiGcG~G~~----~~~l~~~----~~~~~v~giD~s~~~~~~a~~~~------------------~~~------  224 (334)
                      +..+|+++|||+|.-    +..+.+.    .+..+++|+|+++.+++.|++..                  ...      
T Consensus        24 ~~lrIwsaGCstGeE~YSlA~~l~e~~~~~~~~~~I~atDi~~~~l~~A~~g~y~~~~~~~~~~~~~~~yf~~~~~~~~~  103 (193)
T d1af7a2          24 GEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHEG  103 (193)
T ss_dssp             SCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSCS
T ss_pred             CCeEEEEeCCCCchhHHHHHHHHHHhhhhcCCceEEEeecCChHHhhHhhcCcccHHHHhhhhHHHHhhceeecCCCccc
Confidence            356999999999973    3333332    23357999999999999998421                  000      


Q ss_pred             ----------------------CCCCCCCceEEEeCccccCCCCH--HHHHHHHHHcccCCcEEEE
Q 019861          225 ----------------------SNFPKDSIDAVHAGAAIHCWSSP--STGVAEISRVLRPGGVFVG  266 (334)
Q Consensus       225 ----------------------~~~~~~~fD~V~~~~vl~h~~d~--~~~L~~i~r~LkpgG~lii  266 (334)
                                            .+.+.+.||+|+|.+||.++.++  ..+++.+++.|+|||+|++
T Consensus       104 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~fDvI~CRNVLiYf~~~~~~~vl~~l~~~L~pGG~L~l  169 (193)
T d1af7a2         104 LVRVRQELANYVEFSSVNLLEKQYNVPGPFDAIFCRNVMIYFDKTTQEDILRRFVPLLKPDGLLFA  169 (193)
T ss_dssp             EEEECHHHHTTEEEEECCTTCSSCCCCCCEEEEEECSSGGGSCHHHHHHHHHHHGGGEEEEEEEEE
T ss_pred             eeehHHHHHHHHHHhhhhccccccCCCCCccEEEeehhHHhcCHHHHHHHHHHHHHHhCCCcEEEE
Confidence                                  01234789999999999999877  5899999999999999887

>d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein PH1915, middle and C-terminal domains
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=98.96  E-value=1.2e-09  Score=97.70  Aligned_cols=102  Identities=16%  Similarity=0.175  Sum_probs=76.3

Q ss_pred             HHHHcccCCCCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCCC-------------------C
Q 019861          167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESN-------------------F  227 (334)
Q Consensus       167 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~-------------------~  227 (334)
                      ..+..++.+  +.+|||+|||+|.++..++..|. .+|+++|+++.+++.+++++...+-                   .
T Consensus       137 ~~~~~~~~~--g~~VLDl~~g~G~~si~~a~~ga-~~V~~vD~s~~al~~a~~N~~~ngl~~~~~~~~~d~~~~~~~~~~  213 (324)
T d2as0a2         137 LALEKWVQP--GDRVLDVFTYTGGFAIHAAIAGA-DEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEMEKLQK  213 (324)
T ss_dssp             HHHGGGCCT--TCEEEETTCTTTHHHHHHHHTTC-SEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHH
T ss_pred             HHHHhhcCC--CCeeecccCcccchhhhhhhcCC-cEEEeecCCHHHHHHHHHHHHHcCCCccceeeechhhhhhHHHHh
Confidence            445555543  78999999999999999998874 5899999999999999998764431                   1


Q ss_pred             CCCCceEEEeCccc--cCCC-------CHHHHHHHHHHcccCCcEEEEEEecc
Q 019861          228 PKDSIDAVHAGAAI--HCWS-------SPSTGVAEISRVLRPGGVFVGTTYIV  271 (334)
Q Consensus       228 ~~~~fD~V~~~~vl--~h~~-------d~~~~L~~i~r~LkpgG~lii~~~~~  271 (334)
                      ...+||+|++.---  .+-.       +...++..+.++|+|||+|++.+...
T Consensus       214 ~~~~fD~Vi~DpP~~~~~~~~~~~~~~~y~~l~~~a~~ll~pGG~lv~~s~s~  266 (324)
T d2as0a2         214 KGEKFDIVVLDPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSCSQ  266 (324)
T ss_dssp             TTCCEEEEEECCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEECCT
T ss_pred             ccCCCCchhcCCccccCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEEeCCc
Confidence            35689999985321  1111       22457888899999999999987553

>d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein TTHA1280, middle and C-terminal domains
species: Thermus thermophilus [TaxId: 274]

Probab=98.92  E-value=6.9e-10  Score=98.94  Aligned_cols=93  Identities=18%  Similarity=0.176  Sum_probs=71.0

Q ss_pred             CCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCCC------------------CCCCCceEEEe
Q 019861          176 VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESN------------------FPKDSIDAVHA  237 (334)
Q Consensus       176 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~------------------~~~~~fD~V~~  237 (334)
                      .++.+|||++||+|.++..++..+.  +|+++|+|+.+++.+++++...+-                  ...++||+|++
T Consensus       144 ~~g~rVLDl~~gtG~~s~~~a~g~~--~V~~vD~s~~al~~a~~n~~~ngl~~~~~i~~d~~~~~~~~~~~~~~fD~Vi~  221 (318)
T d1wxxa2         144 FRGERALDVFSYAGGFALHLALGFR--EVVAVDSSAEALRRAEENARLNGLGNVRVLEANAFDLLRRLEKEGERFDLVVL  221 (318)
T ss_dssp             CCEEEEEEETCTTTHHHHHHHHHEE--EEEEEESCHHHHHHHHHHHHHTTCTTEEEEESCHHHHHHHHHHTTCCEEEEEE
T ss_pred             hCCCeeeccCCCCcHHHHHHHhcCC--cEEeecchHHHHHHHHHHHHHcCCCCcceeeccHHHHhhhhHhhhcCCCEEEE
Confidence            3578999999999999998886554  999999999999999998764431                  12468999998


Q ss_pred             Cccc---------cCCCCHHHHHHHHHHcccCCcEEEEEEec
Q 019861          238 GAAI---------HCWSSPSTGVAEISRVLRPGGVFVGTTYI  270 (334)
Q Consensus       238 ~~vl---------~h~~d~~~~L~~i~r~LkpgG~lii~~~~  270 (334)
                      .---         ....+...++..+.++|+|||.|++.+-.
T Consensus       222 DpP~~~~~~~~~~~~~~~~~~l~~~a~~lLkpGG~Lv~~scs  263 (318)
T d1wxxa2         222 DPPAFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATASCS  263 (318)
T ss_dssp             CCCCSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred             cCCccccchHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeCC
Confidence            5211         01112246788999999999999887654

>d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methyltransferase TTHA0928
species: Thermus thermophilus [TaxId: 274]

Probab=98.87  E-value=5.1e-09  Score=84.72  Aligned_cols=90  Identities=17%  Similarity=0.211  Sum_probs=65.8

Q ss_pred             CCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCC-----------------CCCCCCceEEEeCc
Q 019861          177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES-----------------NFPKDSIDAVHAGA  239 (334)
Q Consensus       177 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~-----------------~~~~~~fD~V~~~~  239 (334)
                      .+.+|||+|||+|.++..++..|.  +++++|.++.+++.+++++....                 .....+||+|++.=
T Consensus        41 ~g~~vLDl~~G~G~~~i~a~~~ga--~vv~vD~~~~a~~~~~~N~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~If~DP  118 (171)
T d1ws6a1          41 RRGRFLDPFAGSGAVGLEAASEGW--EAVLVEKDPEAVRLLKENVRRTGLGARVVALPVEVFLPEAKAQGERFTVAFMAP  118 (171)
T ss_dssp             TCCEEEEETCSSCHHHHHHHHTTC--EEEEECCCHHHHHHHHHHHHHHTCCCEEECSCHHHHHHHHHHTTCCEEEEEECC
T ss_pred             CCCeEEEeccccchhhhhhhhccc--hhhhcccCHHHHhhhhHHHHhhccccceeeeehhcccccccccCCccceeEEcc
Confidence            478999999999999999888876  89999999999999998866432                 12346899999852


Q ss_pred             cccCCCCHHHHHHHH--HHcccCCcEEEEEEec
Q 019861          240 AIHCWSSPSTGVAEI--SRVLRPGGVFVGTTYI  270 (334)
Q Consensus       240 vl~h~~d~~~~L~~i--~r~LkpgG~lii~~~~  270 (334)
                      =. +. +....+.++  ...|+|||++++..+.
T Consensus       119 PY-~~-~~~~~l~~l~~~~ll~~~g~ivie~~~  149 (171)
T d1ws6a1         119 PY-AM-DLAALFGELLASGLVEAGGLYVLQHPK  149 (171)
T ss_dssp             CT-TS-CTTHHHHHHHHHTCEEEEEEEEEEEET
T ss_pred             cc-cc-CHHHHHHHHHHcCCcCCCeEEEEEecC
Confidence            11 11 222233333  3579999999887654

>d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N5-glutamine methyltransferase, HemK
domain: N5-glutamine methyltransferase, HemK
species: Thermotoga maritima [TaxId: 2336]

Probab=98.76  E-value=1.2e-08  Score=88.23  Aligned_cols=136  Identities=15%  Similarity=0.114  Sum_probs=88.0

Q ss_pred             HHHHHHcccCCCCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCC--------------CC--C
Q 019861          165 EFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES--------------NF--P  228 (334)
Q Consensus       165 ~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~--------------~~--~  228 (334)
                      +.+.+.......+..++||+|||+|..+..++.. +.++|+++|+|+.+++.|+++.....              ++  .
T Consensus        98 lv~~~~~~~~~~~~~~vld~g~GsG~i~~~la~~-~~~~v~a~Dis~~Al~~A~~Na~~~~~~~~~~i~~~~~~~~~~~~  176 (271)
T d1nv8a_          98 LVELALELIRKYGIKTVADIGTGSGAIGVSVAKF-SDAIVFATDVSSKAVEIARKNAERHGVSDRFFVRKGEFLEPFKEK  176 (271)
T ss_dssp             HHHHHHHHHHHHTCCEEEEESCTTSHHHHHHHHH-SSCEEEEEESCHHHHHHHHHHHHHTTCTTSEEEEESSTTGGGGGG
T ss_pred             hhhhhhhhhccccccEEEEeeeeeehhhhhhhhc-ccceeeechhhhhHHHHHHHHHHHcCCCceeEEeecccccccccc
Confidence            3444444444344568999999999998888764 57899999999999999999876432              11  1


Q ss_pred             CCCceEEEeC--cc-----ccC--CCCHH----------HHHHH-HHHcccCCcEEEEEEeccCCCCCchHHHHHHHHHh
Q 019861          229 KDSIDAVHAG--AA-----IHC--WSSPS----------TGVAE-ISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNM  288 (334)
Q Consensus       229 ~~~fD~V~~~--~v-----l~h--~~d~~----------~~L~~-i~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~  288 (334)
                      .++||+|+++  ++     +..  ..+|.          .++++ +.+.|+|||++++.....                 
T Consensus       177 ~~~fDlIVsNPPYI~~~~~l~~~~~~EP~~AL~gg~dGl~~~r~i~~~~L~~~G~l~~Eig~~-----------------  239 (271)
T d1nv8a_         177 FASIEMILSNPPYVKSSAHLPKDVLFEPPEALFGGEDGLDFYREFFGRYDTSGKIVLMEIGED-----------------  239 (271)
T ss_dssp             TTTCCEEEECCCCBCGGGSCTTSCCCSCHHHHBCTTTSCHHHHHHHHHCCCTTCEEEEECCTT-----------------
T ss_pred             cCcccEEEEcccccCcccccceeeeeccccccccccchHHHHHHHHHHhcCCCCEEEEEECHH-----------------
Confidence            3689999997  11     110  01232          22333 567899999988855321                 


Q ss_pred             hhhcCccCCCCHHHHHHHHHhCCCcEEEEeecCcEEEEEEEcC
Q 019861          289 MQISGSYTFLSEREIEDLCRACGLVDFKCTRNRGFVMFTATKP  331 (334)
Q Consensus       289 ~~~~~~~~~~t~~~l~~ll~~~Gf~~v~~~~~g~~~~~~a~K~  331 (334)
                                ..+.+.+++++.||-   .-..|.--++.++|.
T Consensus       240 ----------Q~~~v~~l~~~~g~~---kDl~g~~R~~~~~k~  269 (271)
T d1nv8a_         240 ----------QVEELKKIVSDTVFL---KDSAGKYRFLLLNRR  269 (271)
T ss_dssp             ----------CHHHHTTTSTTCEEE---ECTTSSEEEEEEECC
T ss_pred             ----------HHHHHHHHHHhCCEE---eccCCCcEEEEEEEc
Confidence                      245666777778872   223454555666664

>d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing protein METT10D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Methyltransferase 10 domain
domain: Methyltransferase 10 domain containing protein METT10D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.76  E-value=1.1e-07  Score=81.42  Aligned_cols=64  Identities=11%  Similarity=-0.003  Sum_probs=52.5

Q ss_pred             CCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCC---------------------CCCCCCceEE
Q 019861          177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES---------------------NFPKDSIDAV  235 (334)
Q Consensus       177 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~---------------------~~~~~~fD~V  235 (334)
                      +..++||+|||+|.....++...+..+++|+|+++.+++.|+++.....                     ...+++||+|
T Consensus        61 ~~~~~LDiGtGsg~I~~~l~~~~~~~~~~~~Di~~~al~~A~~N~~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i  140 (250)
T d2h00a1          61 TLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQKTLLMDALKEESEIIYDFC  140 (250)
T ss_dssp             CCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTCSSTTTSTTCCSCCBSEE
T ss_pred             ccceEEEeCCCchHHHHHHHHhCCCccccceecCHHHHHHHHHHHHHhCCCcceeeeeeccHHhhhhhhhhcccCceeEE
Confidence            3468999999999999999888777799999999999999999876432                     1125689999


Q ss_pred             EeCcc
Q 019861          236 HAGAA  240 (334)
Q Consensus       236 ~~~~v  240 (334)
                      +|+==
T Consensus       141 vsNPP  145 (250)
T d2h00a1         141 MCNPP  145 (250)
T ss_dssp             EECCC
T ss_pred             EecCc
Confidence            99743

>d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methyltransferase SPy1538
species: Streptococcus pyogenes [TaxId: 1314]

Probab=98.75  E-value=1.3e-08  Score=80.55  Aligned_cols=93  Identities=15%  Similarity=0.151  Sum_probs=68.9

Q ss_pred             CCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCC----------------CCCCCCceEEEeCcc
Q 019861          177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES----------------NFPKDSIDAVHAGAA  240 (334)
Q Consensus       177 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~----------------~~~~~~fD~V~~~~v  240 (334)
                      .+.+|||+|||+|.++..++.+|. .+|+++|.++.+++.+++++....                ....++||+|++.--
T Consensus        14 ~g~~vlDl~~GtG~~~iea~~rga-~~v~~ve~~~~a~~~~~~n~~~~~~~~~~~ii~~D~~~~l~~~~~~fDiIf~DPP   92 (152)
T d2esra1          14 NGGRVLDLFAGSGGLAIEAVSRGM-SAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAIDCLTGRFDLVFLDPP   92 (152)
T ss_dssp             CSCEEEEETCTTCHHHHHHHHTTC-CEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHHHBCSCEEEEEECCS
T ss_pred             CCCeEEEcCCccCHHHHHHHHhCc-ceeeeehhchhhhhhhhhhhhhcccccchhhhcccccccccccccccceeEechh
Confidence            578999999999999998888875 599999999999999998876443                123578999988521


Q ss_pred             ccCCCCHHHHHHHHH--HcccCCcEEEEEEecc
Q 019861          241 IHCWSSPSTGVAEIS--RVLRPGGVFVGTTYIV  271 (334)
Q Consensus       241 l~h~~d~~~~L~~i~--r~LkpgG~lii~~~~~  271 (334)
                      .. ...-...|..+.  +.|+|||.+++.....
T Consensus        93 y~-~~~~~~~l~~i~~~~~L~~~g~iiiE~~~~  124 (152)
T d2esra1          93 YA-KETIVATIEALAAKNLLSEQVMVVCETDKT  124 (152)
T ss_dssp             SH-HHHHHHHHHHHHHTTCEEEEEEEEEEEETT
T ss_pred             hc-cchHHHHHHHHHHCCCcCCCeEEEEEeCCC
Confidence            00 011134555554  5699999999876643

>d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein SMu776, middle and C-terminal domains
species: Streptococcus mutans [TaxId: 1309]

Probab=98.74  E-value=1.6e-08  Score=89.67  Aligned_cols=93  Identities=11%  Similarity=0.102  Sum_probs=70.9

Q ss_pred             CCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCCC--------------------CCCCCceEEE
Q 019861          177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESN--------------------FPKDSIDAVH  236 (334)
Q Consensus       177 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~--------------------~~~~~fD~V~  236 (334)
                      ++.+|||+.||+|.++..++..|. .+|+++|+|+.+++.+++++....-                    ....+||+|+
T Consensus       144 ~g~~VLdlf~~~G~~sl~aa~~ga-~~V~~vD~s~~a~~~a~~N~~~n~l~~~~~~~i~~d~~~~l~~~~~~~~~fD~Ii  222 (317)
T d2b78a2         144 AGKTVLNLFSYTAAFSVAAAMGGA-MATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDYFKYARRHHLTYDIII  222 (317)
T ss_dssp             BTCEEEEETCTTTHHHHHHHHTTB-SEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHHHHHHHHTTCCEEEEE
T ss_pred             CCCceeecCCCCcHHHHHHHhCCC-ceEEEecCCHHHHHHHHHHHHHhcccCcceEEEEccHHHHHHHHHhhcCCCCEEE
Confidence            478999999999999988887663 5899999999999999998764321                    1245899999


Q ss_pred             eCc--------ccc-CCCCHHHHHHHHHHcccCCcEEEEEEec
Q 019861          237 AGA--------AIH-CWSSPSTGVAEISRVLRPGGVFVGTTYI  270 (334)
Q Consensus       237 ~~~--------vl~-h~~d~~~~L~~i~r~LkpgG~lii~~~~  270 (334)
                      +.=        .++ -..+...+++.+.++|+|||+|++.+-.
T Consensus       223 ~DPP~f~~~~~~~~~~~~~~~~L~~~a~~ll~pgG~l~~~scs  265 (317)
T d2b78a2         223 IDPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIASTNA  265 (317)
T ss_dssp             ECCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred             EcChhhccchhHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeCC
Confidence            841        111 1113356888999999999999987754

>d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein Ta1320
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.69  E-value=2.6e-08  Score=82.00  Aligned_cols=64  Identities=17%  Similarity=0.154  Sum_probs=51.6

Q ss_pred             CCCCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCC------CCCCCCceEEEeC
Q 019861          174 KPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES------NFPKDSIDAVHAG  238 (334)
Q Consensus       174 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~------~~~~~~fD~V~~~  238 (334)
                      ....|++|||+|||+|.++..++..+. .+|+|+|+++.+++.|+++.....      .-.+++||+|+++
T Consensus        45 ~dl~Gk~VLDlGcGtG~l~i~a~~~ga-~~V~~vDid~~a~~~ar~N~~~~~~~~~D~~~l~~~fD~Vi~N  114 (197)
T d1ne2a_          45 GNIGGRSVIDAGTGNGILACGSYLLGA-ESVTAFDIDPDAIETAKRNCGGVNFMVADVSEISGKYDTWIMN  114 (197)
T ss_dssp             TSSBTSEEEEETCTTCHHHHHHHHTTB-SEEEEEESCHHHHHHHHHHCTTSEEEECCGGGCCCCEEEEEEC
T ss_pred             CCCCCCEEEEeCCCCcHHHHHHHHcCC-CcccccccCHHHHHHHHHccccccEEEEehhhcCCcceEEEeC
Confidence            444688999999999999988888874 489999999999999999865321      1124789999996

>d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: COMT domain-containing protein 1, COMTD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.68  E-value=4.7e-08  Score=81.97  Aligned_cols=102  Identities=15%  Similarity=0.103  Sum_probs=78.0

Q ss_pred             HHHHcccCCCCCCcEEEECCCcCHHHHHHHHcCC-CCeEEEEeCCHHHHHHHHHHHhcCC--------------------
Q 019861          167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGL-FSLVVALDYSENMLKQCYEFVQQES--------------------  225 (334)
Q Consensus       167 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~-~~~v~giD~s~~~~~~a~~~~~~~~--------------------  225 (334)
                      ..+..+......++|||||||+|..+.+++...+ .++++.+|.++...+.|++.+...+                    
T Consensus        49 ~lL~~L~~~~~~k~vLEiGt~~GyStl~~a~al~~~g~i~tie~~~~~~~~A~~~~~~ag~~~~i~~~~Gda~e~l~~~~  128 (219)
T d2avda1          49 QLLANLARLIQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELL  128 (219)
T ss_dssp             HHHHHHHHHTTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHH
T ss_pred             HHHHHHHHccCCCeEEEEechhhHHHHHHHHhCCCCceEEEEeechhHHHHHHHHHHhcCccceEEEEEeehhhcchhhh
Confidence            3333444444568999999999999999998743 5799999999999999999876432                    


Q ss_pred             -CCCCCCceEEEeCccccCCCCHHHHHHHHHHcccCCcEEEEEEecc
Q 019861          226 -NFPKDSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIV  271 (334)
Q Consensus       226 -~~~~~~fD~V~~~~vl~h~~d~~~~L~~i~r~LkpgG~lii~~~~~  271 (334)
                       ....++||+|+..+-=   .+....+..+.+.|+|||.+++-....
T Consensus       129 ~~~~~~~fD~ifiD~dk---~~y~~~~~~~~~lL~~GGvii~Dn~l~  172 (219)
T d2avda1         129 AAGEAGTFDVAVVDADK---ENCSAYYERCLQLLRPGGILAVLRVLW  172 (219)
T ss_dssp             HTTCTTCEEEEEECSCS---TTHHHHHHHHHHHEEEEEEEEEECCSG
T ss_pred             hhcccCCccEEEEeCCH---HHHHHHHHHHHHHhcCCcEEEEeCCcc
Confidence             1235789999987532   244567889999999999999865544

>d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Catechol O-methyltransferase, COMT
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.67  E-value=9.9e-09  Score=86.02  Aligned_cols=95  Identities=15%  Similarity=0.151  Sum_probs=69.9

Q ss_pred             CCCCcEEEECCCcCHHHHHHHHcC-CCCeEEEEeCCHHHHHHHHHHHhcCC---------------------CCCCCCce
Q 019861          176 VLGGNIIDASCGSGLFSRIFAKSG-LFSLVVALDYSENMLKQCYEFVQQES---------------------NFPKDSID  233 (334)
Q Consensus       176 ~~~~~vLDiGcG~G~~~~~l~~~~-~~~~v~giD~s~~~~~~a~~~~~~~~---------------------~~~~~~fD  233 (334)
                      .++.+|||||||+|..+..++... ..++++++|+++.+.+.|++++...+                     .+..+.||
T Consensus        55 ~kpk~ILEiGt~~G~Sti~la~al~~~g~v~sid~~~~~~~~a~~~~~~~gl~~~i~l~~Gd~~e~l~~l~~~~~~~~~D  134 (214)
T d2cl5a1          55 YSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEMNPDYAAITQQMLNFAGLQDKVTILNGASQDLIPQLKKKYDVDTLD  134 (214)
T ss_dssp             HCCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHGGGHHHHSCCCCEE
T ss_pred             hCCCEEEEEccCchhHHHHHHHhCCCccEEEEEeccHHHHHHHHHHHHHcCCCccceeeeccccccccchhhcccccccc
Confidence            345799999999999999998874 35799999999999999998765422                     13356899


Q ss_pred             EEEeCccccCCCCHHHHHHHHHHcccCCcEEEEEEecc
Q 019861          234 AVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIV  271 (334)
Q Consensus       234 ~V~~~~vl~h~~d~~~~L~~i~r~LkpgG~lii~~~~~  271 (334)
                      +|+..+.-+. ......+.+..+.|+|||++++-....
T Consensus       135 ~ifiD~~~~~-~~~~~~l~~~~~lLkpGGvIv~Ddvl~  171 (214)
T d2cl5a1         135 MVFLDHWKDR-YLPDTLLLEKCGLLRKGTVLLADNVIV  171 (214)
T ss_dssp             EEEECSCGGG-HHHHHHHHHHTTCEEEEEEEEESCCCC
T ss_pred             eeeecccccc-cccHHHHHHHhCccCCCcEEEEeCcCC
Confidence            9998642111 112345777888999999887754443

>d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Putative methyltransferase Atu0340
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.66  E-value=9.5e-08  Score=83.83  Aligned_cols=93  Identities=13%  Similarity=-0.017  Sum_probs=69.3

Q ss_pred             CCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCC----C----------------CCCCCceEE
Q 019861          176 VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES----N----------------FPKDSIDAV  235 (334)
Q Consensus       176 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~----~----------------~~~~~fD~V  235 (334)
                      .++.+|||+.||+|.++..++..|.  +|+++|.|+.+++.|++++....    .                ....+||+|
T Consensus       131 ~~~~rVLdlf~~tG~~sl~aa~~GA--~V~~VD~s~~al~~a~~N~~ln~~~~~~~~~i~~D~~~~l~~~~~~~~~fD~I  208 (309)
T d2igta1         131 DRPLKVLNLFGYTGVASLVAAAAGA--EVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFIQREERRGSTYDII  208 (309)
T ss_dssp             SSCCEEEEETCTTCHHHHHHHHTTC--EEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHHHHHHHHTCCBSEE
T ss_pred             cCCCeEEEecCCCcHHHHHHHhCCC--eEEEEeChHHHHHHHHHhhhhhcccCCcEEEEeCCHHHhHHHHhhcCCCCCEE
Confidence            3478999999999999999998875  99999999999999999865321    0                114689999


Q ss_pred             EeC---ccc------cCCC-CHHHHHHHHHHcccCCcEEEEEEec
Q 019861          236 HAG---AAI------HCWS-SPSTGVAEISRVLRPGGVFVGTTYI  270 (334)
Q Consensus       236 ~~~---~vl------~h~~-d~~~~L~~i~r~LkpgG~lii~~~~  270 (334)
                      ++.   +..      ..+. +....++.+.++|+|||.+++.+.+
T Consensus       209 ilDPP~f~~~~~~~~~~~~~~~~~l~~~~~~ll~~~g~~ll~t~~  253 (309)
T d2igta1         209 LTDPPKFGRGTHGEVWQLFDHLPLMLDICREILSPKALGLVLTAY  253 (309)
T ss_dssp             EECCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCTTCCEEEEEEC
T ss_pred             EECCCcccccccchhHHHHHHHHHHHHHHHHhcCCCCCEEEEecC
Confidence            983   211      1111 2245677888999999987776654

>d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein PH1948
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=98.62  E-value=8.1e-08  Score=79.53  Aligned_cols=66  Identities=17%  Similarity=0.176  Sum_probs=53.0

Q ss_pred             cCCCCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCC----------CCCCCCceEEEeCc
Q 019861          173 LKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES----------NFPKDSIDAVHAGA  239 (334)
Q Consensus       173 l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~----------~~~~~~fD~V~~~~  239 (334)
                      .+...|.+|||+|||+|.++..++..+. ..|+|+|+++.+++.+++++....          .-.+++||+|+++-
T Consensus        42 ~~dl~g~~vLDlg~GtG~l~i~a~~~g~-~~v~~vdi~~~~~~~a~~N~~~~~~~~~~~~~d~~~~~~~fD~Vi~nP  117 (201)
T d1wy7a1          42 LGDIEGKVVADLGAGTGVLSYGALLLGA-KEVICVEVDKEAVDVLIENLGEFKGKFKVFIGDVSEFNSRVDIVIMNP  117 (201)
T ss_dssp             TTSSTTCEEEEETCTTCHHHHHHHHTTC-SEEEEEESCHHHHHHHHHHTGGGTTSEEEEESCGGGCCCCCSEEEECC
T ss_pred             cCCCCCCEEEECcCcchHHHHHHHHcCC-CEEEEEcCcHHHHHHHHHHHHHcCCCceEEECchhhhCCcCcEEEEcC
Confidence            4445688999999999999998888774 589999999999999999866432          11256799999864

>d2fpoa1 c.66.1.46 (A:10-192) Methylase YhhF {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methylase YhhF
species: Escherichia coli [TaxId: 562]

Probab=98.61  E-value=4.1e-07  Score=73.98  Aligned_cols=124  Identities=7%  Similarity=0.008  Sum_probs=87.9

Q ss_pred             CCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCC---------------CCCCCCceEEEeCccc
Q 019861          177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES---------------NFPKDSIDAVHAGAAI  241 (334)
Q Consensus       177 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~---------------~~~~~~fD~V~~~~vl  241 (334)
                      .+.+|||++||+|.++..++.+|. .+|+.+|.++.+++.+++++....               .....+||+|++.==.
T Consensus        43 ~~~~vLDlfaGsG~~giealsrGa-~~v~~VE~~~~a~~~~k~N~~~~~~~~~~ii~~d~~~~l~~~~~~fDlIf~DPPY  121 (183)
T d2fpoa1          43 VDAQCLDCFAGSGALGLEALSRYA-AGATLIEMDRAVSQQLIKNLATLKAGNARVVNSNAMSFLAQKGTPHNIVFVDPPF  121 (183)
T ss_dssp             TTCEEEETTCTTCHHHHHHHHTTC-SEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCHHHHHSSCCCCEEEEEECCSS
T ss_pred             chhhhhhhhccccceeeeEEecCc-ceeEEEEEeechhhHHHHHHhhccccceeeeeecccccccccccccCEEEEcCcc
Confidence            467999999999999999998885 589999999999999998876432               1235789999996321


Q ss_pred             cCCCCHHHHHHHHHH--cccCCcEEEEEEeccCCCCCchHHHHHHHHHhhhhcCccCCCCHHHHHHHHHhCCCcEEEEee
Q 019861          242 HCWSSPSTGVAEISR--VLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLCRACGLVDFKCTR  319 (334)
Q Consensus       242 ~h~~d~~~~L~~i~r--~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~l~~ll~~~Gf~~v~~~~  319 (334)
                      . ......++..+.+  .|+++|.+++........                     ...          ..||+.++...
T Consensus       122 ~-~~~~~~~l~~l~~~~~L~~~~iIiiE~~~~~~~---------------------~~~----------~~~~~i~k~k~  169 (183)
T d2fpoa1         122 R-RGLLEETINLLEDNGWLADEALIYVESEVENGL---------------------PTV----------PANWSLHREKV  169 (183)
T ss_dssp             S-TTTHHHHHHHHHHTTCEEEEEEEEEEEEGGGCS---------------------CCC----------CTTEEEEEEEE
T ss_pred             c-cchHHHHHHHHHHCCCCCCCeEEEEEecCcCCc---------------------ccC----------CCCcEEEEEEE
Confidence            1 1234566666655  699999999876543210                     000          14788888777


Q ss_pred             cCcEEEEEEEcCCC
Q 019861          320 NRGFVMFTATKPSQ  333 (334)
Q Consensus       320 ~g~~~~~~a~K~~~  333 (334)
                      .|...+..-+|..|
T Consensus       170 yG~t~i~~~~k~~~  183 (183)
T d2fpoa1         170 AGQVAYRLYQREAQ  183 (183)
T ss_dssp             ETTEEEEEEEECCC
T ss_pred             eCcEEEEEEEEcCC
Confidence            77766666666544

>d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermus thermophilus [TaxId: 274]

Probab=98.53  E-value=3.8e-07  Score=80.41  Aligned_cols=94  Identities=15%  Similarity=0.089  Sum_probs=71.3

Q ss_pred             CCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcC------CC--------------CCCCCceEEE
Q 019861          177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQE------SN--------------FPKDSIDAVH  236 (334)
Q Consensus       177 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~------~~--------------~~~~~fD~V~  236 (334)
                      .+++||.||.|.|..+..+.+..+..+++++|+++.+++.+++.+...      .+              -.+++||+|+
T Consensus        77 ~pk~VLiiG~G~G~~~~~ll~~~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~d~rv~i~~~Da~~~l~~~~~~yDvIi  156 (312)
T d1uira_          77 EPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERYDVVI  156 (312)
T ss_dssp             CCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCCEEEEE
T ss_pred             CcceEEEeCCCchHHHHHHHhcCCcceEEEecCCHHHHHHHHhcCcccccCccCCCceEEEEchHHHHhhhcCCcccEEE
Confidence            367999999999999999988876679999999999999999876321      00              1256899999


Q ss_pred             eCccccCC-CC------HHHHHHHHHHcccCCcEEEEEEec
Q 019861          237 AGAAIHCW-SS------PSTGVAEISRVLRPGGVFVGTTYI  270 (334)
Q Consensus       237 ~~~vl~h~-~d------~~~~L~~i~r~LkpgG~lii~~~~  270 (334)
                      +...=.+. ..      -..+++.+++.|+|||++++....
T Consensus       157 ~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gvlv~~~~s  197 (312)
T d1uira_         157 IDLTDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQTGM  197 (312)
T ss_dssp             EECCCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEEEEE
T ss_pred             EeCCCcccccchhhhhhhHHHHHHHHHhcCCCceEEEecCC
Confidence            65321111 11      147899999999999999886654

>d2f8la1 c.66.1.45 (A:2-329) Hypothetical protein Lmo1582 {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: Hypothetical protein Lmo1582
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.44  E-value=2.6e-07  Score=82.22  Aligned_cols=102  Identities=13%  Similarity=0.166  Sum_probs=73.9

Q ss_pred             HcccCCCCCCcEEEECCCcCHHHHHHHHc-----CCCCeEEEEeCCHHHHHHHHHHHhcC------------CCCCCCCc
Q 019861          170 KGYLKPVLGGNIIDASCGSGLFSRIFAKS-----GLFSLVVALDYSENMLKQCYEFVQQE------------SNFPKDSI  232 (334)
Q Consensus       170 ~~~l~~~~~~~vLDiGcG~G~~~~~l~~~-----~~~~~v~giD~s~~~~~~a~~~~~~~------------~~~~~~~f  232 (334)
                      ..++...++.+|||.+||+|.++..+...     .....++|+|+++.+++.|+.+....            ...+..+|
T Consensus       110 ~~~~~~~~~~~vlDp~~GsG~~l~~~~~~l~~~~~~~~~~~g~di~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~f  189 (328)
T d2f8la1         110 EKVIQKKKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQKMTLLHQDGLANLLVDPV  189 (328)
T ss_dssp             HHHHTTCSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTCCCEEEESCTTSCCCCCCE
T ss_pred             HHHhCCCCCCEEEeCCCCcchhHHHHHHHHHhccCccceEEEecccHHHHHHHHHHHHHhhhhhhhhccccccccccccc
Confidence            34445666789999999999999887643     23347999999999999988764421            13456789


Q ss_pred             eEEEeCccccCCCC------------------HHHHHHHHHHcccCCcEEEEEEecc
Q 019861          233 DAVHAGAAIHCWSS------------------PSTGVAEISRVLRPGGVFVGTTYIV  271 (334)
Q Consensus       233 D~V~~~~vl~h~~d------------------~~~~L~~i~r~LkpgG~lii~~~~~  271 (334)
                      |+|+++==......                  ...++..+.+.|+|||++.+..|..
T Consensus       190 D~vi~NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~~~I~p~~  246 (328)
T d2f8la1         190 DVVISDLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFLVPDA  246 (328)
T ss_dssp             EEEEEECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEEEEGG
T ss_pred             cccccCCCCCCCccchhhhhcchhcccCcchHHHHHHHHHHHhcCCCCceEEEecCc
Confidence            99999732111000                  1357999999999999999988864

>d2ih2a1 c.66.1.27 (A:21-243) DNA methylase TaqI, N-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: DNA methylase TaqI, N-terminal domain
domain: DNA methylase TaqI, N-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=98.43  E-value=1.8e-07  Score=78.19  Aligned_cols=110  Identities=20%  Similarity=0.295  Sum_probs=78.5

Q ss_pred             cHHHHHHHHcccCCCCCCcEEEECCCcCHHHHHHHHc-CCCCeEEEEeCCHHHHHHHHHHHh--cC--CCCCCCCceEEE
Q 019861          162 PEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQ--QE--SNFPKDSIDAVH  236 (334)
Q Consensus       162 ~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~~v~giD~s~~~~~~a~~~~~--~~--~~~~~~~fD~V~  236 (334)
                      |....+.+.+.+...++.+|||.|||+|.++..+.+. .....++|+|+++..+..++....  ..  .......||+|+
T Consensus         4 P~~i~~~m~~l~~~~~~~~IlDp~~G~G~fl~~~~~~~~~~~~i~g~ei~~~~~~~~~~~~~~~~~~~~~~~~~~fd~ii   83 (223)
T d2ih2a1           4 PPEVVDFMVSLAEAPRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLPPWAEGILADFLLWEPGEAFDLIL   83 (223)
T ss_dssp             CHHHHHHHHHHCCCCTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCCTTEEEEESCGGGCCCSSCEEEEE
T ss_pred             CHHHHHHHHHhcCCCCcCEEEECCCchHHHHHHHHHhccccceEEeeecCHHHHhhcccceeeeeehhccccccccceec
Confidence            5666778888888888899999999999998888765 334579999999876654432110  00  123457899999


Q ss_pred             eCccccCC---C-------------------------C-HHHHHHHHHHcccCCcEEEEEEecc
Q 019861          237 AGAAIHCW---S-------------------------S-PSTGVAEISRVLRPGGVFVGTTYIV  271 (334)
Q Consensus       237 ~~~vl~h~---~-------------------------d-~~~~L~~i~r~LkpgG~lii~~~~~  271 (334)
                      ++--....   .                         + ...++....+.|++||++.+..|..
T Consensus        84 ~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~al~~lk~~G~~~~I~p~~  147 (223)
T d2ih2a1          84 GNPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVFVVPAT  147 (223)
T ss_dssp             ECCCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEEEEEGG
T ss_pred             ccCccccccccccccchhhhhhhhhhhhccccCCCcchHHHHHHHHHHHhcccCCceEEEEeee
Confidence            87443211   0                         0 1356788999999999999998864

>d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Caffeoyl-CoA O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=98.42  E-value=4.3e-07  Score=76.32  Aligned_cols=92  Identities=12%  Similarity=0.063  Sum_probs=73.3

Q ss_pred             CCCCcEEEECCCcCHHHHHHHHcCC-CCeEEEEeCCHHHHHHHHHHHhcCCC----------------------CCCCCc
Q 019861          176 VLGGNIIDASCGSGLFSRIFAKSGL-FSLVVALDYSENMLKQCYEFVQQESN----------------------FPKDSI  232 (334)
Q Consensus       176 ~~~~~vLDiGcG~G~~~~~l~~~~~-~~~v~giD~s~~~~~~a~~~~~~~~~----------------------~~~~~f  232 (334)
                      ...++|||||+++|..+.+++...+ .++++.+|.++...+.|++.+...+.                      ...++|
T Consensus        58 ~~~k~iLEiGT~~GyStl~la~al~~~g~v~tie~~~~~~~~A~~~~~~~g~~~~i~~~~g~a~~~L~~l~~~~~~~~~f  137 (227)
T d1susa1          58 INAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVLDEMIKDEKNHGSY  137 (227)
T ss_dssp             HTCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHCGGGTTCB
T ss_pred             cCCCcEEEecchhhhhHHHHHhhCCCCcEEEEEeccchhHHHHHHHHHHhccccceeeeehHHHHHHHHHHhccccCCce
Confidence            3467999999999999999997744 57999999999999999998765431                      124689


Q ss_pred             eEEEeCccccCCCCHHHHHHHHHHcccCCcEEEEEEec
Q 019861          233 DAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYI  270 (334)
Q Consensus       233 D~V~~~~vl~h~~d~~~~L~~i~r~LkpgG~lii~~~~  270 (334)
                      |+|+..+-  + .+....++.+.+.|+|||.+++-...
T Consensus       138 D~iFiDa~--k-~~y~~~~e~~~~ll~~gGiii~DNvl  172 (227)
T d1susa1         138 DFIFVDAD--K-DNYLNYHKRLIDLVKVGGVIGYDNTL  172 (227)
T ss_dssp             SEEEECSC--S-TTHHHHHHHHHHHBCTTCCEEEETTT
T ss_pred             eEEEeccc--h-hhhHHHHHHHHhhcCCCcEEEEccCC
Confidence            99998752  1 34567888999999999999986544

>d2fhpa1 c.66.1.46 (A:1-182) Putative methylase EF2452 {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methylase EF2452
species: Enterococcus faecalis [TaxId: 1351]

Probab=98.40  E-value=9.7e-07  Score=71.63  Aligned_cols=105  Identities=18%  Similarity=0.107  Sum_probs=75.2

Q ss_pred             HHHHHHHcccC-CCCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCC-----------------
Q 019861          164 KEFELMKGYLK-PVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES-----------------  225 (334)
Q Consensus       164 ~~~~~l~~~l~-~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~-----------------  225 (334)
                      ...+.+...+. ...+.+|||+.||+|.++..++..|. .+|+++|.++.+++.+++++....                 
T Consensus        27 ~vrealFn~l~~~~~~~~vLDlfaGsG~~g~ea~srGa-~~v~~ve~~~~a~~~~~~N~~~~~~~~~~~i~~~D~~~~l~  105 (182)
T d2fhpa1          27 KVKESIFNMIGPYFDGGMALDLYSGSGGLAIEAVSRGM-DKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRALE  105 (182)
T ss_dssp             HHHHHHHHHHCSCCSSCEEEETTCTTCHHHHHHHHTTC-SEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCCEEEEcccccccccceeeecch-hHHHHHHHHHHHHHHHHHHhhhhhcccccccccccchhhhh
Confidence            33344444443 23578999999999999999999885 589999999999999998765321                 


Q ss_pred             --CCCCCCceEEEeCccccCCCCHHHHHHHHHH--cccCCcEEEEEEec
Q 019861          226 --NFPKDSIDAVHAGAAIHCWSSPSTGVAEISR--VLRPGGVFVGTTYI  270 (334)
Q Consensus       226 --~~~~~~fD~V~~~~vl~h~~d~~~~L~~i~r--~LkpgG~lii~~~~  270 (334)
                        .-...+||+|++.==. +..+....|..+..  .|++||.+++....
T Consensus       106 ~~~~~~~~fDlIflDPPY-~~~~~~~~l~~i~~~~~L~~~giIi~E~~~  153 (182)
T d2fhpa1         106 QFYEEKLQFDLVLLDPPY-AKQEIVSQLEKMLERQLLTNEAVIVCETDK  153 (182)
T ss_dssp             HHHHTTCCEEEEEECCCG-GGCCHHHHHHHHHHTTCEEEEEEEEEEEET
T ss_pred             hhcccCCCcceEEechhh-hhhHHHHHHHHHHHCCCCCCCEEEEEEcCC
Confidence              0124579999985211 12344567777754  69999999887654

>d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermotoga maritima [TaxId: 2336]

Probab=98.38  E-value=8.3e-07  Score=77.35  Aligned_cols=93  Identities=13%  Similarity=0.082  Sum_probs=70.1

Q ss_pred             CCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcC------C-------------CCCCCCceEEEeC
Q 019861          178 GGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQE------S-------------NFPKDSIDAVHAG  238 (334)
Q Consensus       178 ~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~------~-------------~~~~~~fD~V~~~  238 (334)
                      +++||-||.|.|..+..+.+..+..+++++|+++.+++.+++.+...      .             .-.+++||+|++.
T Consensus        90 pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEIDp~Vi~~a~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvIi~D  169 (295)
T d1inla_          90 PKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFKNEFDVIIID  169 (295)
T ss_dssp             CCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGCSSCEEEEEEE
T ss_pred             CceEEEecCCchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhhcccccCCCcEEEhhhHHHHHhcCCCCCCEEEEc
Confidence            57999999999999999998766678999999999999999865321      1             1125689999975


Q ss_pred             ccccC-CC----CHHHHHHHHHHcccCCcEEEEEEec
Q 019861          239 AAIHC-WS----SPSTGVAEISRVLRPGGVFVGTTYI  270 (334)
Q Consensus       239 ~vl~h-~~----d~~~~L~~i~r~LkpgG~lii~~~~  270 (334)
                      ..-.. .+    -...+++.+++.|+|||++++...+
T Consensus       170 ~~dp~~~~~~~L~t~efy~~~~~~L~~~Gi~v~q~~s  206 (295)
T d1inla_         170 STDPTAGQGGHLFTEEFYQACYDALKEDGVFSAETED  206 (295)
T ss_dssp             C----------CCSHHHHHHHHHHEEEEEEEEEECCC
T ss_pred             CCCCCcCchhhhccHHHHHHHHhhcCCCcEEEEecCC
Confidence            32211 11    1257899999999999999886544

>d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Putative spermidine synthetase PF0127 (SpeE)
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=98.35  E-value=2.1e-06  Score=74.28  Aligned_cols=92  Identities=11%  Similarity=0.125  Sum_probs=69.2

Q ss_pred             CCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCC-----------C-------------CCCCCc
Q 019861          177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES-----------N-------------FPKDSI  232 (334)
Q Consensus       177 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~-----------~-------------~~~~~f  232 (334)
                      .+.+||.||+|.|..+..+.+.. ..+++.+|+++.+++.+++.+....           +             -.+++|
T Consensus        72 ~p~~vLiiG~G~G~~~~~~l~~~-~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~~~~~~d~rv~i~~~Da~~~l~~~~~y  150 (276)
T d1mjfa_          72 KPKRVLVIGGGDGGTVREVLQHD-VDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFIKNNRGF  150 (276)
T ss_dssp             CCCEEEEEECTTSHHHHHHTTSC-CSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHHHHCCCE
T ss_pred             CCceEEEecCCchHHHHHHHHhC-CceEEEecCCHHHHHHHHHhhhhccchhhhhhccCCCCceEEEChHHHHHhccCCC
Confidence            46799999999999999988764 4689999999999999998653211           0             014689


Q ss_pred             eEEEeCccccCCCCH-----HHHHHHHHHcccCCcEEEEEEec
Q 019861          233 DAVHAGAAIHCWSSP-----STGVAEISRVLRPGGVFVGTTYI  270 (334)
Q Consensus       233 D~V~~~~vl~h~~d~-----~~~L~~i~r~LkpgG~lii~~~~  270 (334)
                      |+|++...- ....+     ..+++.+++.|+|||++++...+
T Consensus       151 DvIi~D~~~-~~~~~~~L~t~eF~~~~~~~L~~~Gv~v~q~~s  192 (276)
T d1mjfa_         151 DVIIADSTD-PVGPAKVLFSEEFYRYVYDALNNPGIYVTQAGS  192 (276)
T ss_dssp             EEEEEECCC-CC-----TTSHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred             CEEEEeCCC-CCCCcccccCHHHHHhhHhhcCCCceEEEecCC
Confidence            999975432 11111     47899999999999999886654

>d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.34  E-value=1.6e-06  Score=75.41  Aligned_cols=94  Identities=18%  Similarity=0.211  Sum_probs=72.4

Q ss_pred             CCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhc------CC--------------CCCCCCceEEE
Q 019861          177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQ------ES--------------NFPKDSIDAVH  236 (334)
Q Consensus       177 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~------~~--------------~~~~~~fD~V~  236 (334)
                      ..++||-||.|.|..+..+.+..+..+++++|+++.+++.+++.+..      ..              ...+++||+|+
T Consensus        80 ~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEiD~~Vi~~~~~~f~~~~~~~~~~r~~i~~~Da~~~l~~~~~~~yDvIi  159 (290)
T d1xj5a_          80 NPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGSYDAVI  159 (290)
T ss_dssp             CCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCTTCEEEEE
T ss_pred             CCcceEEecCCchHHHHHHHhcccceeeEEecCCHHHHHHHHHhchhhhccccCCCcEEEEccHHHHHhhccccCccEEE
Confidence            35799999999999999999886666899999999999999986531      11              23456899999


Q ss_pred             eCccccCCCC----HHHHHHHHHHcccCCcEEEEEEec
Q 019861          237 AGAAIHCWSS----PSTGVAEISRVLRPGGVFVGTTYI  270 (334)
Q Consensus       237 ~~~vl~h~~d----~~~~L~~i~r~LkpgG~lii~~~~  270 (334)
                      ....-..-+.    ...+++.+++.|+|||++++...+
T Consensus       160 ~D~~dp~~~~~~L~t~eF~~~~~~~L~~~Gi~v~q~~s  197 (290)
T d1xj5a_         160 VDSSDPIGPAKELFEKPFFQSVARALRPGGVVCTQAES  197 (290)
T ss_dssp             ECCCCTTSGGGGGGSHHHHHHHHHHEEEEEEEEEECCC
T ss_pred             EcCCCCCCcchhhCCHHHHHHHHHhcCCCcEEEEecCC
Confidence            8543111110    147899999999999999987654

>d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Bacillus subtilis [TaxId: 1423]

Probab=98.34  E-value=1.6e-06  Score=74.84  Aligned_cols=94  Identities=15%  Similarity=0.174  Sum_probs=71.6

Q ss_pred             CCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhc------CC-------------CCCCCCceEEEe
Q 019861          177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQ------ES-------------NFPKDSIDAVHA  237 (334)
Q Consensus       177 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~------~~-------------~~~~~~fD~V~~  237 (334)
                      .+.+||-||.|.|..+..+.+..+..+++.+|+++.+++.|++.+..      +.             .-.+++||+|+.
T Consensus        75 ~p~~vLiiGgG~G~~~~~~l~~~~~~~i~~VEID~~Vi~~a~~~~~~~~~~~~d~r~~i~~~D~~~~l~~~~~~yDvIi~  154 (274)
T d1iy9a_          75 NPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKSENQYDVIMV  154 (274)
T ss_dssp             SCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTCCSCEEEEEE
T ss_pred             CcceEEecCCCCcHHHHHHHhcCCcceEEEecCCHHHHHHHHHhChhhcccccCCCeEEEechHHHHHhhcCCCCCEEEE
Confidence            35799999999999999999876567999999999999999987632      11             022568999998


Q ss_pred             CccccCCC----CHHHHHHHHHHcccCCcEEEEEEec
Q 019861          238 GAAIHCWS----SPSTGVAEISRVLRPGGVFVGTTYI  270 (334)
Q Consensus       238 ~~vl~h~~----d~~~~L~~i~r~LkpgG~lii~~~~  270 (334)
                      ...-..-.    --..+++.+++.|+|||+++....+
T Consensus       155 D~~~p~~~~~~L~t~eFy~~~~~~L~~~Gv~v~q~~s  191 (274)
T d1iy9a_         155 DSTEPVGPAVNLFTKGFYAGIAKALKEDGIFVAQTDN  191 (274)
T ss_dssp             SCSSCCSCCCCCSTTHHHHHHHHHEEEEEEEEEECCC
T ss_pred             cCCCCCCcchhhccHHHHHHHHhhcCCCceEEEecCC
Confidence            64311101    1247899999999999999876543

>d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Caenorhabditis elegans [TaxId: 6239]

Probab=98.33  E-value=1.5e-06  Score=76.09  Aligned_cols=94  Identities=13%  Similarity=0.080  Sum_probs=69.8

Q ss_pred             CCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCC-----C--------------CCCCCceEEEe
Q 019861          177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES-----N--------------FPKDSIDAVHA  237 (334)
Q Consensus       177 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~-----~--------------~~~~~fD~V~~  237 (334)
                      .+++||-||.|.|..+..+.+..+..+++.+|+++.+++.+++.+....     +              -.+++||+|+.
T Consensus       106 ~pk~VLIiGgG~G~~~rellk~~~v~~v~~VEID~~Vv~~a~~~~~~~~~~~~dprv~i~i~Da~~~l~~~~~~yDvII~  185 (312)
T d2b2ca1         106 DPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNHKNEFDVIIT  185 (312)
T ss_dssp             SCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHCTTCEEEEEE
T ss_pred             CCCeEEEeCCCchHHHHHHHHcCCcceEEEEcccHHHHHHHHhhchhhccccCCCCeEEEEchHHHHHHhCCCCCCEEEE
Confidence            3579999999999999999987655699999999999999998764321     0              12568999998


Q ss_pred             CccccCCC----CHHHHHHHHHHcccCCcEEEEEEec
Q 019861          238 GAAIHCWS----SPSTGVAEISRVLRPGGVFVGTTYI  270 (334)
Q Consensus       238 ~~vl~h~~----d~~~~L~~i~r~LkpgG~lii~~~~  270 (334)
                      ...-..-+    --..+++.+++.|+|||+++....+
T Consensus       186 D~~dp~~~~~~L~t~eFy~~~~~~L~~~Gi~v~q~~s  222 (312)
T d2b2ca1         186 DSSDPVGPAESLFGQSYYELLRDALKEDGILSSQGES  222 (312)
T ss_dssp             CCC-------------HHHHHHHHEEEEEEEEEECCC
T ss_pred             cCCCCCCcchhhhhHHHHHHHHhhcCCCcEEEEecCC
Confidence            64321111    1146799999999999999986544

>d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.32  E-value=1.5e-06  Score=75.42  Aligned_cols=93  Identities=15%  Similarity=0.171  Sum_probs=70.6

Q ss_pred             CCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhc------CC-------------CCCCCCceEEEe
Q 019861          177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQ------ES-------------NFPKDSIDAVHA  237 (334)
Q Consensus       177 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~------~~-------------~~~~~~fD~V~~  237 (334)
                      .+++||-||.|.|..+..+.+..+..+++.+|+++.+++.+++.+..      +.             .-.+++||+|++
T Consensus        78 ~pk~vLiiGgG~G~~~~~~l~~~~~~~v~~vEiD~~Vv~~a~~~~~~~~~~~~d~rv~i~~~Da~~~l~~~~~~yDvIi~  157 (285)
T d2o07a1          78 NPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQDAFDVIIT  157 (285)
T ss_dssp             SCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTCSSCEEEEEE
T ss_pred             CcCeEEEeCCCchHHHHHHHHcCCcceeeeccCCHHHHHHHHhhchhhccccCCCCceEEEccHHHHHhcCCCCCCEEEE
Confidence            35799999999999999999876567999999999999999987632      11             022468999998


Q ss_pred             CccccCCCC-----HHHHHHHHHHcccCCcEEEEEEec
Q 019861          238 GAAIHCWSS-----PSTGVAEISRVLRPGGVFVGTTYI  270 (334)
Q Consensus       238 ~~vl~h~~d-----~~~~L~~i~r~LkpgG~lii~~~~  270 (334)
                      ... .-...     ...+++.+++.|+|||++++....
T Consensus       158 D~~-~p~~~~~~L~t~eF~~~~~~~L~~~Gi~v~q~~s  194 (285)
T d2o07a1         158 DSS-DPMGPAESLFKESYYQLMKTALKEDGVLCCQGEC  194 (285)
T ss_dssp             ECC------------CHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             cCC-CCCCcccccccHHHHHHHHHhcCCCCeEEEeccc
Confidence            632 11111     136799999999999999987654

>d1jsxa_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glucose-inhibited division protein B (GidB)
domain: Glucose-inhibited division protein B (GidB)
species: Escherichia coli [TaxId: 562]

Probab=98.27  E-value=2.7e-06  Score=70.14  Aligned_cols=88  Identities=17%  Similarity=0.090  Sum_probs=70.2

Q ss_pred             CCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCC-------------CCCCCCceEEEeCccccC
Q 019861          177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES-------------NFPKDSIDAVHAGAAIHC  243 (334)
Q Consensus       177 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~-------------~~~~~~fD~V~~~~vl~h  243 (334)
                      ++.+|+|+|+|.|.-+..++-..|..+++.+|.+..-+...++......             ...+.+||+|++..+   
T Consensus        65 ~~~~ilDiGsGaG~PGi~laI~~p~~~~~Lves~~KK~~FL~~~~~~L~L~nv~v~~~R~E~~~~~~~fD~V~sRA~---  141 (207)
T d1jsxa_          65 QGERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELKLENIEPVQSRVEEFPSEPPFDGVISRAF---  141 (207)
T ss_dssp             CSSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCSSEEEEECCTTTSCCCSCEEEEECSCS---
T ss_pred             cCCceeeeeccCCceeeehhhhcccceEEEEecchHHHHHHHHHHHHcCCcceeeeccchhhhccccccceehhhhh---
Confidence            3569999999999999999988888999999999976666665433211             123568999999875   


Q ss_pred             CCCHHHHHHHHHHcccCCcEEEEEE
Q 019861          244 WSSPSTGVAEISRVLRPGGVFVGTT  268 (334)
Q Consensus       244 ~~d~~~~L~~i~r~LkpgG~lii~~  268 (334)
                       .+...++.-+...++++|.+++.-
T Consensus       142 -~~~~~ll~~~~~~l~~~g~~~~~K  165 (207)
T d1jsxa_         142 -ASLNDMVSWCHHLPGEQGRFYALK  165 (207)
T ss_dssp             -SSHHHHHHHHTTSEEEEEEEEEEE
T ss_pred             -cCHHHHHHHHHHhcCCCcEEEEEC
Confidence             567788999999999999988854

>d1wg8a2 c.66.1.23 (A:5-108,A:207-284) TM0872, methyltransferase domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: MraW-like putative methyltransferases
domain: TM0872, methyltransferase domain
species: Thermus thermophilus [TaxId: 274]

Probab=98.25  E-value=7.5e-07  Score=72.14  Aligned_cols=102  Identities=20%  Similarity=0.265  Sum_probs=76.6

Q ss_pred             HHHHcccCCCCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCC---------------CCCCCC
Q 019861          167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES---------------NFPKDS  231 (334)
Q Consensus       167 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~---------------~~~~~~  231 (334)
                      +.+..++.+.+++.++|..+|.|..+..+.+.+.  +|+|+|.++.+++.+++......               ....+.
T Consensus         8 ~Evl~~l~~~~g~~~vD~T~G~GGhs~~iL~~~~--~viaiD~D~~ai~~a~~~~~~~~~~~~~~f~~~~~~l~~~~~~~   85 (182)
T d1wg8a2           8 QEALDLLAVRPGGVYVDATLGGAGHARGILERGG--RVIGLDQDPEAVARAKGLHLPGLTVVQGNFRHLKRHLAALGVER   85 (182)
T ss_dssp             HHHHHHHTCCTTCEEEETTCTTSHHHHHHHHTTC--EEEEEESCHHHHHHHHHTCCTTEEEEESCGGGHHHHHHHTTCSC
T ss_pred             HHHHHhcCCCCCCEEEEeCCCCcHHHHHHhcccC--cEEEEhhhhhHHHHHhhccccceeEeehHHHHHHHHHHHcCCCc
Confidence            3455667778899999999999999999998754  99999999999999986422110               123467


Q ss_pred             ceEEEeCccc--cCCCCH-------HHHHHHHHHcccCCcEEEEEEec
Q 019861          232 IDAVHAGAAI--HCWSSP-------STGVAEISRVLRPGGVFVGTTYI  270 (334)
Q Consensus       232 fD~V~~~~vl--~h~~d~-------~~~L~~i~r~LkpgG~lii~~~~  270 (334)
                      +|.|++...+  .++.++       ...|....+.|++||.+++.+..
T Consensus        86 vdgIl~DLGvSs~qld~~~re~~~~~~~L~~~~~~lk~gg~~~ii~fh  133 (182)
T d1wg8a2          86 VDGILADLGVSSFHLDDPSDELNALKEFLEQAAEVLAPGGRLVVIAFH  133 (182)
T ss_dssp             EEEEEEECSCCHHHHHCGGTHHHHHHHHHHHHHHHEEEEEEEEEEECS
T ss_pred             cCEEEEEccCCHHHhhcchHHHHHHHHHHHHHHhhhCCCCeEEEEecc
Confidence            9999985433  223333       34688889999999999987764

>d1qama_ c.66.1.24 (A:) rRNA adenine dimethylase {Bacillus subtilis, Ermc' [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: rRNA adenine dimethylase
species: Bacillus subtilis, Ermc' [TaxId: 1423]

Probab=98.18  E-value=4.6e-06  Score=70.23  Aligned_cols=59  Identities=14%  Similarity=0.221  Sum_probs=51.8

Q ss_pred             HHHHHHHHcccCCCCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhc
Q 019861          163 EKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQ  223 (334)
Q Consensus       163 ~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~  223 (334)
                      ....+.+.+.+...++.+|||||||+|.++..+++.+.  +++++|+++.+++..++++..
T Consensus         7 ~~i~~~iv~~~~~~~~d~VlEIGpG~G~LT~~Ll~~~~--~v~avE~D~~l~~~l~~~~~~   65 (235)
T d1qama_           7 KHNIDKIMTNIRLNEHDNIFEIGSGKGHFTLELVQRCN--FVTAIEIDHKLCKTTENKLVD   65 (235)
T ss_dssp             HHHHHHHHTTCCCCTTCEEEEECCTTSHHHHHHHHHSS--EEEEECSCHHHHHHHHHHTTT
T ss_pred             HHHHHHHHHhcCCCCCCeEEEECCCchHHHHHHHhCcC--ceEEEeeccchHHHHHHHhhc
Confidence            44556778888888899999999999999999999876  999999999999999987654

>d2okca1 c.66.1.45 (A:9-433) Type I restriction enzyme StySJI M protein {Bacteroides thetaiotaomicron [TaxId: 818]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: Type I restriction enzyme StySJI M protein
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=98.09  E-value=8.8e-06  Score=74.70  Aligned_cols=131  Identities=16%  Similarity=0.150  Sum_probs=93.8

Q ss_pred             chhHHHHHHhHHHhhH-----hcCCCCcHHHHHHHHcccCCCCCCcEEEECCCcCHHHHHHHHcCC-------------C
Q 019861          140 PFMSFIYERGWRQNFV-----WGGFPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGL-------------F  201 (334)
Q Consensus       140 ~~~~~~~~~~w~~~~~-----~~~~~~~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~-------------~  201 (334)
                      ++++..|+...++...     .+.|.-|....+.+.+.+.+.++.+|+|..||+|.++..+.+...             .
T Consensus       120 d~~g~~yE~ll~~~~~~~~k~~G~f~TP~~Iv~~mv~ll~~~~~~~IlDPacGsG~fL~~a~~~~~~~~~~~~~~~~~~~  199 (425)
T d2okca1         120 DVKGAIYESILEKNGQDKKSGAGQYFTPRPLIQAMVDCINPQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRD  199 (425)
T ss_dssp             HHHHHHHHHHHHHHHTCTTTCCGGGCCCHHHHHHHHHHHCCCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHhhhccchhhccchhhhHhhheeccCcccceeeccccccCccHHHHHHHHHhhccchhhhhhhhh
Confidence            4455566654443221     244788999999999999888889999999999999987765411             1


Q ss_pred             CeEEEEeCCHHHHHHHHHHHhcCC---------------CCCCCCceEEEeCccc--cCC--------------CC-HHH
Q 019861          202 SLVVALDYSENMLKQCYEFVQQES---------------NFPKDSIDAVHAGAAI--HCW--------------SS-PST  249 (334)
Q Consensus       202 ~~v~giD~s~~~~~~a~~~~~~~~---------------~~~~~~fD~V~~~~vl--~h~--------------~d-~~~  249 (334)
                      ..++|+|+++.+...|+.++.-.+               ..+...||+|+++==+  ...              .+ ...
T Consensus       200 ~~l~g~E~~~~~~~la~~n~~l~g~~~~~~~i~~~d~l~~~~~~~fD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~~~~  279 (425)
T d2okca1         200 KALHGVDNTPLVVTLASMNLYLHGIGTDRSPIVCEDSLEKEPSTLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLN  279 (425)
T ss_dssp             TTEEEEESCHHHHHHHHHHHHHTTCCSSCCSEEECCTTTSCCSSCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHH
T ss_pred             hhhhhhhccHHHHHHHHhhhhhcCCccccceeecCchhhhhcccccceEEecCCCCCCccccchhhhhhcccccccHHHH
Confidence            258999999999998886543211               2345689999986221  111              01 136


Q ss_pred             HHHHHHHcccCCcEEEEEEec
Q 019861          250 GVAEISRVLRPGGVFVGTTYI  270 (334)
Q Consensus       250 ~L~~i~r~LkpgG~lii~~~~  270 (334)
                      ++..+.+.|++||++.+..|.
T Consensus       280 Fi~~~~~~Lk~~G~~~iI~p~  300 (425)
T d2okca1         280 FLQHMMLMLKTGGRAAVVLPD  300 (425)
T ss_dssp             HHHHHHHHEEEEEEEEEEEEH
T ss_pred             HHHHHHHhcCCCCeEEEEech
Confidence            899999999999999998886

>d1ej0a_ c.66.1.2 (A:) RNA methyltransferase FtsJ {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: RNA methyltransferase FtsJ
domain: RNA methyltransferase FtsJ
species: Escherichia coli [TaxId: 562]

Probab=98.05  E-value=2.8e-05  Score=62.52  Aligned_cols=90  Identities=21%  Similarity=0.274  Sum_probs=64.5

Q ss_pred             CCCCcEEEECCCcCHHHHHHHHc-CCCCeEEEEeCCHHH-----------------HHHHHHHHhcCCCCCCCCceEEEe
Q 019861          176 VLGGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENM-----------------LKQCYEFVQQESNFPKDSIDAVHA  237 (334)
Q Consensus       176 ~~~~~vLDiGcG~G~~~~~l~~~-~~~~~v~giD~s~~~-----------------~~~a~~~~~~~~~~~~~~fD~V~~  237 (334)
                      .++.+|||+||+.|.|+..+.+. +....++++|+.+..                 ......      ....+.+|+|++
T Consensus        21 k~~~~vlDLg~aPGgw~q~~~~~~~~~~~v~~vDl~~~~~i~~~~~~~~d~~~~~~~~~~~~------~~~~~~~DlVlS   94 (180)
T d1ej0a_          21 KPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLPMDPIVGVDFLQGDFRDELVMKALLE------RVGDSKVQVVMS   94 (180)
T ss_dssp             CTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSCCCCCTTEEEEESCTTSHHHHHHHHH------HHTTCCEEEEEE
T ss_pred             CCCCeEEEEeccCCcceEEEEeeccccceEEEeecccccccCCceEeecccccchhhhhhhh------hccCcceeEEEe
Confidence            45789999999999999988875 445689999976510                 000000      123467999999


Q ss_pred             CccccCCCCH-----------HHHHHHHHHcccCCcEEEEEEecc
Q 019861          238 GAAIHCWSSP-----------STGVAEISRVLRPGGVFVGTTYIV  271 (334)
Q Consensus       238 ~~vl~h~~d~-----------~~~L~~i~r~LkpgG~lii~~~~~  271 (334)
                      .....-..+.           ...|.-+.++|++||.+++-.+..
T Consensus        95 D~ap~~sg~~~~d~~~~~~L~~~~l~~a~~~Lk~gG~fV~K~F~g  139 (180)
T d1ej0a_          95 DMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVFQG  139 (180)
T ss_dssp             CCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEESS
T ss_pred             cccchhcccchhHHHHHHHHHHHHHHhhhhccCCCCcEEEEEecC
Confidence            8775544432           256777889999999999988763

>d2ifta1 c.66.1.46 (A:11-193) Putative methylase HI0767 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methylase HI0767
species: Haemophilus influenzae [TaxId: 727]

Probab=98.04  E-value=8.6e-06  Score=65.86  Aligned_cols=93  Identities=15%  Similarity=0.148  Sum_probs=69.5

Q ss_pred             CCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCC-------------------CCCCCCceEEEe
Q 019861          177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES-------------------NFPKDSIDAVHA  237 (334)
Q Consensus       177 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~-------------------~~~~~~fD~V~~  237 (334)
                      .+.+|||+-||+|.++..+..+|. ..++.+|.+...++..+++++...                   ......||+|++
T Consensus        43 ~~~~vLDlFaGsG~~glEalSRGA-~~v~fVE~~~~a~~~ik~Ni~~l~~~~~~~~~~~~d~~~~l~~~~~~~~fDlIFl  121 (183)
T d2ifta1          43 HQSECLDGFAGSGSLGFEALSRQA-KKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFLKQPQNQPHFDVVFL  121 (183)
T ss_dssp             TTCEEEETTCTTCHHHHHHHHTTC-SEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHTTSCCSSCCEEEEEE
T ss_pred             ccceEeecccCccceeeeeeeecc-eeeEEeecccchhhhHhhHHhhhcccccccccccccccccccccccCCcccEEEe
Confidence            467999999999999999999985 699999999999999998765321                   122457999998


Q ss_pred             CccccCCCCHHHHHHHHHH--cccCCcEEEEEEecc
Q 019861          238 GAAIHCWSSPSTGVAEISR--VLRPGGVFVGTTYIV  271 (334)
Q Consensus       238 ~~vl~h~~d~~~~L~~i~r--~LkpgG~lii~~~~~  271 (334)
                      .==.. .......|..+..  .|+++|.+++.....
T Consensus       122 DPPY~-~~~~~~~l~~l~~~~~L~~~~liiiE~~~~  156 (183)
T d2ifta1         122 DPPFH-FNLAEQAISLLCENNWLKPNALIYVETEKD  156 (183)
T ss_dssp             CCCSS-SCHHHHHHHHHHHTTCEEEEEEEEEEEESS
T ss_pred             chhHh-hhhHHHHHHHHHHhCCcCCCcEEEEEecCC
Confidence            52111 1223456676654  799999999977643

>d1xdza_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glucose-inhibited division protein B (GidB)
domain: Glucose-inhibited division protein B (GidB)
species: Bacillus subtilis [TaxId: 1423]

Probab=98.00  E-value=1.8e-05  Score=66.45  Aligned_cols=89  Identities=20%  Similarity=0.121  Sum_probs=68.7

Q ss_pred             CCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHH---HHhcCC------------C--CCCCCceEEEeCc
Q 019861          177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYE---FVQQES------------N--FPKDSIDAVHAGA  239 (334)
Q Consensus       177 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~---~~~~~~------------~--~~~~~fD~V~~~~  239 (334)
                      .+.+++|||+|.|.-+..++-..|..+++.+|.+..-+...+.   .+.-..            .  -..++||+|++..
T Consensus        70 ~~~~ilDiGSGaGfPGi~laI~~p~~~v~Lves~~KK~~FL~~v~~~L~L~n~~i~~~R~E~~~~~~~~~~~~D~v~sRA  149 (239)
T d1xdza_          70 QVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQLENTTFCHDRAETFGQRKDVRESYDIVTARA  149 (239)
T ss_dssp             GCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEESCHHHHTTCTTTTTCEEEEEEEC
T ss_pred             CCCeEEeecCCCchHHHHHHHhCCCccceeecchHHHHHHHHHHHHHhCCCCcEEEeehhhhccccccccccceEEEEhh
Confidence            4679999999999999999888888899999999865555443   332111            1  1135799999987


Q ss_pred             cccCCCCHHHHHHHHHHcccCCcEEEEEEe
Q 019861          240 AIHCWSSPSTGVAEISRVLRPGGVFVGTTY  269 (334)
Q Consensus       240 vl~h~~d~~~~L~~i~r~LkpgG~lii~~~  269 (334)
                      +    .....++.-+...+++||.+++.-.
T Consensus       150 v----a~l~~ll~~~~~~l~~~g~~i~~KG  175 (239)
T d1xdza_         150 V----ARLSVLSELCLPLVKKNGLFVALKA  175 (239)
T ss_dssp             C----SCHHHHHHHHGGGEEEEEEEEEEEC
T ss_pred             h----hCHHHHHHHHhhhcccCCEEEEECC
Confidence            5    5778889999999999999888543

>d2ar0a1 c.66.1.45 (A:6-529) M.EcoKI {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: M.EcoKI
species: Escherichia coli [TaxId: 562]

Probab=97.91  E-value=2e-05  Score=74.17  Aligned_cols=114  Identities=14%  Similarity=0.070  Sum_probs=84.6

Q ss_pred             cCCCCcHHHHHHHHcccCCCCCCcEEEECCCcCHHHHHHHHc----CC--------------CCeEEEEeCCHHHHHHHH
Q 019861          157 GGFPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKS----GL--------------FSLVVALDYSENMLKQCY  218 (334)
Q Consensus       157 ~~~~~~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~----~~--------------~~~v~giD~s~~~~~~a~  218 (334)
                      +.|.-|....+.+...+.+.++.+|+|-.||+|.++..+.+.    ..              ...++|+|+++.+...|+
T Consensus       144 GqfyTP~~Iv~~mv~ll~~~~~~~i~DPacGsG~fL~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~G~E~~~~~~~la~  223 (524)
T d2ar0a1         144 GQYFTPRPLIKTIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLAL  223 (524)
T ss_dssp             -CCCCCHHHHHHHHHHHCCCTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHH
T ss_pred             chhccccchhHhhhhcccCccchhhcchhhhcchhhHHHHHHHHHhcCcccccchhHHHHHHHhhhhhhccCHHHHHHHH
Confidence            568889999999999999888899999999999998776553    10              125899999999999888


Q ss_pred             HHHhcCC---------------C-----CCCCCceEEEeCc--cccCC-----------CC-HHHHHHHHHHcccCCcEE
Q 019861          219 EFVQQES---------------N-----FPKDSIDAVHAGA--AIHCW-----------SS-PSTGVAEISRVLRPGGVF  264 (334)
Q Consensus       219 ~~~~~~~---------------~-----~~~~~fD~V~~~~--vl~h~-----------~d-~~~~L~~i~r~LkpgG~l  264 (334)
                      -++.-..               .     .....||+|+++=  .....           .+ ...++..+.+.|++||++
T Consensus       224 ~nl~l~~~~~~i~~~~~~~~~~~l~~d~~~~~kfD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~gGr~  303 (524)
T d2ar0a1         224 MNCLLHDIEGNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHPGGRA  303 (524)
T ss_dssp             HHHHTTTCCCBGGGTBSEEESCTTSHHHHTSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEEEEEEE
T ss_pred             HHHHhhcccccccccchhhhhhhhhhcccccccceeEEecCCccccccccchhhhccccccccHHHHHHHHHhccccCcE
Confidence            6543221               0     1235799999862  11111           11 136899999999999999


Q ss_pred             EEEEec
Q 019861          265 VGTTYI  270 (334)
Q Consensus       265 ii~~~~  270 (334)
                      .+..|.
T Consensus       304 aiIlP~  309 (524)
T d2ar0a1         304 AVVVPD  309 (524)
T ss_dssp             EEEEEH
T ss_pred             EEEEeh
Confidence            999986

>d2p41a1 c.66.1.25 (A:8-264) An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 {Dengue virus 2 [TaxId: 11060]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap methylase
domain: An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5
species: Dengue virus 2 [TaxId: 11060]

Probab=97.86  E-value=9.8e-05  Score=61.55  Aligned_cols=105  Identities=12%  Similarity=0.071  Sum_probs=68.0

Q ss_pred             HHHHHHcccCCCCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHH--HHH----HHhc---C---CCCCCCCc
Q 019861          165 EFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQ--CYE----FVQQ---E---SNFPKDSI  232 (334)
Q Consensus       165 ~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~--a~~----~~~~---~---~~~~~~~f  232 (334)
                      +.+...+ ....+.++|+|+|||.|.++..++.......+.|+|+--...+.  ..+    .+..   .   ...+.+..
T Consensus        55 l~~~~~~-~~~~~~~~vvDlG~~pGgws~~~a~~~~v~~V~g~~iG~d~~e~P~~~~~~~~ni~~~~~~~dv~~l~~~~~  133 (257)
T d2p41a1          55 LRWFVER-NLVTPEGKVVDLGCGRGGWSYYCGGLKNVREVKGLTKGGPGHEEPIPMSTYGWNLVRLQSGVDVFFIPPERC  133 (257)
T ss_dssp             HHHHHHT-TSSCCCEEEEEETCTTSHHHHHHHTSTTEEEEEEECCCSTTSCCCCCCCSTTGGGEEEECSCCTTTSCCCCC
T ss_pred             HHHHHHh-cCccCCCeEEEecCCCChHHHHHHhhcCCCceeEEEecCccccCCccccccccccccchhhhhHHhcCCCcC
Confidence            3333333 34456789999999999999999987654577788773211000  000    0000   0   12456789


Q ss_pred             eEEEeCccccCCCCHH-------HHHHHHHHcccCCcEEEEEEecc
Q 019861          233 DAVHAGAAIHCWSSPS-------TGVAEISRVLRPGGVFVGTTYIV  271 (334)
Q Consensus       233 D~V~~~~vl~h~~d~~-------~~L~~i~r~LkpgG~lii~~~~~  271 (334)
                      |+|+|..+ ++.+++.       .+|+-+.+.|+|||.+++-+...
T Consensus       134 D~vlcDm~-ess~~~~vd~~Rtl~vLela~~wLk~gg~FvvKVl~p  178 (257)
T d2p41a1         134 DTLLCDIG-ESSPNPTVEAGRTLRVLNLVENWLSNNTQFCVKVLNP  178 (257)
T ss_dssp             SEEEECCC-CCCSSHHHHHHHHHHHHHHHHHHCCTTCEEEEEESCC
T ss_pred             CEEEeeCC-CCCCCchhhhhhHHHHHHHHHHHcccCCEEEEEECCC
Confidence            99999876 3455542       56777789999999999887764

>d1yuba_ c.66.1.24 (A:) rRNA adenine dimethylase {Streptococcus pneumoniae, Ermam [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: rRNA adenine dimethylase
species: Streptococcus pneumoniae, Ermam [TaxId: 1313]

Probab=97.82  E-value=1e-06  Score=74.89  Aligned_cols=81  Identities=15%  Similarity=0.208  Sum_probs=59.7

Q ss_pred             HHHHHHHcccCCCCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCC------------CCCCCC
Q 019861          164 KEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES------------NFPKDS  231 (334)
Q Consensus       164 ~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~------------~~~~~~  231 (334)
                      ...+.+.+.+...++.+|||||||+|.++..|++.+.  +++++|+++.+++.+++++....            +++...
T Consensus        16 ~ii~kIv~~~~~~~~d~VLEIGpG~G~LT~~L~~~~~--~v~aIE~D~~l~~~l~~~~~~~~n~~ii~~D~l~~~~~~~~   93 (245)
T d1yuba_          16 KVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKISK--QVTSIELDSHLFNLSSEKLKLNTRVTLIHQDILQFQFPNKQ   93 (245)
T ss_dssp             TTHHHHHHHCCCCSSEEEEECSCCCSSCSHHHHHHSS--EEEESSSSCSSSSSSSCTTTTCSEEEECCSCCTTTTCCCSS
T ss_pred             HHHHHHHHhcCCCCCCeEEEECCCccHHHHHHHhhcC--ceeEeeecccchhhhhhhhhhccchhhhhhhhhccccccce
Confidence            3346777778777889999999999999999999976  99999999999888877654321            234444


Q ss_pred             ceEEEeCccccCCCCH
Q 019861          232 IDAVHAGAAIHCWSSP  247 (334)
Q Consensus       232 fD~V~~~~vl~h~~d~  247 (334)
                      ++.|+ ...-.|+..+
T Consensus        94 ~~~vv-~NLPY~Ist~  108 (245)
T d1yuba_          94 RYKIV-GNIPYHLSTQ  108 (245)
T ss_dssp             EEEEE-EECCSSSCHH
T ss_pred             eeeEe-eeeehhhhHH
Confidence            55455 4444566554

>d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=97.75  E-value=4.5e-05  Score=65.87  Aligned_cols=104  Identities=22%  Similarity=0.236  Sum_probs=78.3

Q ss_pred             HHHcccCCCCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCCC---------------CCCCCc
Q 019861          168 LMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESN---------------FPKDSI  232 (334)
Q Consensus       168 ~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~---------------~~~~~f  232 (334)
                      .....+.+.++.+|||+.+|.|.=+..++..+..+.++++|+++.-++..++++...+.               ...+.|
T Consensus        93 l~~~~L~~~~g~~vLD~CAaPGgKt~~la~l~~~~~i~a~d~~~~R~~~l~~~~~r~g~~~~~~~~~~~~~~~~~~~~~f  172 (284)
T d1sqga2          93 GCMTWLAPQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGMKATVKQGDGRYPSQWCGEQQF  172 (284)
T ss_dssp             THHHHHCCCTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTTCCCEEEECCTTCTHHHHTTCCE
T ss_pred             ccccccCccccceeEeccCccccchhhhhhhhhhhhhhhhhcchhhhhhHhhhhhcccccceeeeccccccchhcccccc
Confidence            33445677789999999999999888888877667899999999988888877654331               124679


Q ss_pred             eEEEeC------ccccCCCCH----------------HHHHHHHHHcccCCcEEEEEEecc
Q 019861          233 DAVHAG------AAIHCWSSP----------------STGVAEISRVLRPGGVFVGTTYIV  271 (334)
Q Consensus       233 D~V~~~------~vl~h~~d~----------------~~~L~~i~r~LkpgG~lii~~~~~  271 (334)
                      |.|++.      .++..-++.                ..+|..+.+.|||||+++-++=..
T Consensus       173 d~IL~DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lk~gG~lvYsTCS~  233 (284)
T d1sqga2         173 DRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCSV  233 (284)
T ss_dssp             EEEEEECCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEESCC
T ss_pred             cEEEEeccccccCccccccchhhccccchhhHHHHHHHHHHHHHHHhcCCCceEEEeeecC
Confidence            999973      334333331                367889999999999999877664

>d1uwva2 c.66.1.40 (A:75-432) rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: (Uracil-5-)-methyltransferase
domain: rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain
species: Escherichia coli [TaxId: 562]

Probab=97.74  E-value=8.7e-05  Score=66.13  Aligned_cols=99  Identities=17%  Similarity=0.223  Sum_probs=69.8

Q ss_pred             HHHHHHHHcccCCCCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCC-----------------
Q 019861          163 EKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES-----------------  225 (334)
Q Consensus       163 ~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~-----------------  225 (334)
                      +.+.+.+.+++...++.+|||+-||.|.++..|++.+.  +|+|+|.++.+++.|+++.....                 
T Consensus       198 e~l~~~v~~~~~~~~~~~vlDLycG~G~fsl~La~~~~--~V~gvE~~~~ai~~A~~na~~n~i~n~~~~~~~~~~~~~~  275 (358)
T d1uwva2         198 QKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQAA--SVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTK  275 (358)
T ss_dssp             HHHHHHHHHHHTCCTTCEEEEESCTTTTTHHHHHTTSS--EEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCTTSCCSS
T ss_pred             hHHHHHHHHhhccCCCceEEEecccccccchhcccccc--EEEeccCcHHHHHHHHHhHHhcccccceeeecchhhhhhh
Confidence            34556677777777788999999999999999998875  99999999999999998765332                 


Q ss_pred             -CCCCCCceEEEeCccccCCCCHHHHHHHHHHcccCCcEEEEE
Q 019861          226 -NFPKDSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGT  267 (334)
Q Consensus       226 -~~~~~~fD~V~~~~vl~h~~d~~~~L~~i~r~LkpgG~lii~  267 (334)
                       ......+|+|+..=-=.-   ...+++.+.+ ++|.-+++++
T Consensus       276 ~~~~~~~~d~vilDPPR~G---~~~~~~~l~~-~~~~~ivYVS  314 (358)
T d1uwva2         276 QPWAKNGFDKVLLDPARAG---AAGVMQQIIK-LEPIRIVYVS  314 (358)
T ss_dssp             SGGGTTCCSEEEECCCTTC---CHHHHHHHHH-HCCSEEEEEE
T ss_pred             hhhhhccCceEEeCCCCcc---HHHHHHHHHH-cCCCEEEEEe
Confidence             011356899887410000   0235566555 3566666664

>d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: Hypothetical methyltransferase PH1374
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=97.66  E-value=0.00019  Score=62.64  Aligned_cols=105  Identities=20%  Similarity=0.166  Sum_probs=74.6

Q ss_pred             HHHHcccCCCCCCcEEEECCCcCHHHHHHHHcC-CCCeEEEEeCCHHHHHHHHHHHhcCC--------------CCCCCC
Q 019861          167 ELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSG-LFSLVVALDYSENMLKQCYEFVQQES--------------NFPKDS  231 (334)
Q Consensus       167 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~~v~giD~s~~~~~~a~~~~~~~~--------------~~~~~~  231 (334)
                      ......+.+.++.+|||+.+|.|.=+..++... ..+.+++.|.++.-++..++++...+              +..+..
T Consensus       106 ~l~~~~l~~~~g~~vlD~CAapGgKt~~l~~~~~~~~~i~a~d~~~~r~~~l~~~~~r~~~~~i~~~~~d~~~~~~~~~~  185 (313)
T d1ixka_         106 MYPPVALDPKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVLNVILFHSSSLHIGELNVE  185 (313)
T ss_dssp             HHHHHHHCCCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCCSEEEESSCGGGGGGGCCC
T ss_pred             cchhhcccCCccceeeecccchhhhhHhhhhhcccccceeeeccCHHHHHHHHHHHHHHHhhcccccccccccccccccc
Confidence            344455677889999999999998777776653 34689999999998888887655322              122568


Q ss_pred             ceEEEeC------ccccCCCC------H----------HHHHHHHHHcccCCcEEEEEEecc
Q 019861          232 IDAVHAG------AAIHCWSS------P----------STGVAEISRVLRPGGVFVGTTYIV  271 (334)
Q Consensus       232 fD~V~~~------~vl~h~~d------~----------~~~L~~i~r~LkpgG~lii~~~~~  271 (334)
                      ||.|++.      .++..-++      +          ..+|....+.|||||.++-+|=..
T Consensus       186 fD~ILvDaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lk~gG~lVYsTCSl  247 (313)
T d1ixka_         186 FDKILLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTCSL  247 (313)
T ss_dssp             EEEEEEECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCC
T ss_pred             ccEEEEccccccCCceeeccchhhhhhhhHHHHHHHHHHHHHHhhhheeCCCcEEEEeeccC
Confidence            9999973      23322221      1          357889999999999988877664

>d1qyra_ c.66.1.24 (A:) High level kasugamycin resistance protein KsgA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: High level kasugamycin resistance protein KsgA
species: Escherichia coli [TaxId: 562]

Probab=97.60  E-value=3.4e-05  Score=65.42  Aligned_cols=56  Identities=5%  Similarity=0.108  Sum_probs=48.0

Q ss_pred             HHHHHHHcccCCCCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHH
Q 019861          164 KEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFV  221 (334)
Q Consensus       164 ~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~  221 (334)
                      ...+.+.+.+...++..|||||||.|.++..|++.+.  +++++|+++.+++..+++.
T Consensus         8 ~~~~~Iv~~~~~~~~d~vlEIGpG~G~LT~~Ll~~~~--~v~aiEiD~~l~~~L~~~~   63 (252)
T d1qyra_           8 FVIDSIVSAINPQKGQAMVEIGPGLAALTEPVGERLD--QLTVIELDRDLAARLQTHP   63 (252)
T ss_dssp             HHHHHHHHHHCCCTTCCEEEECCTTTTTHHHHHTTCS--CEEEECCCHHHHHHHHTCT
T ss_pred             HHHHHHHHhcCCCCCCEEEEECCCchHHHHHHHccCC--ceEEEEeccchhHHHHHHh
Confidence            3456677777777789999999999999999999876  9999999999999887643

>d2jnya1 b.171.1.1 (A:1-59) Uncharacterized protein Cgl1405/cg1592 {Corynebacterium glutamicum [TaxId: 1718]}

class: All beta proteins
fold: Trm112p-like
superfamily: Trm112p-like
family: Trm112p-like
domain: Uncharacterized protein Cgl1405/cg1592
species: Corynebacterium glutamicum [TaxId: 1718]

Probab=97.56  E-value=1.5e-05  Score=51.26  Aligned_cols=44  Identities=20%  Similarity=0.193  Sum_probs=36.9

Q ss_pred             CCceeCCCCCCCccccCCCCcccccccCCcccccccccccccccCcccccccC
Q 019861           69 KNVLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSGVGTHFDMTAAS  121 (334)
Q Consensus        69 ~~~l~CPiC~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~~~~~~~~~~~~~~  121 (334)
                      ++.|.||.|++++....         ..+.+.|..|+..|+..+|++.++.+.
T Consensus         8 L~iL~CP~ck~~L~~~~---------~~~~Lvc~~~~~~YPI~dgIPvLL~de   51 (59)
T d2jnya1           8 LEVLACPKDKGPLRYLE---------SEQLLVNERLNLAYRIDDGIPVLLIDE   51 (59)
T ss_dssp             TCCCBCTTTCCBCEEET---------TTTEEEETTTTEEEEEETTEECCCSSC
T ss_pred             HHHhcCCCCCCEeEEeC---------CCCEEEcCccCccccccCCccccCHHH
Confidence            46799999999987643         236799999999999999999888754

>d1zq9a1 c.66.1.24 (A:36-313) Probable dimethyladenosine transferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: Probable dimethyladenosine transferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.54  E-value=8.9e-05  Score=63.56  Aligned_cols=58  Identities=12%  Similarity=0.078  Sum_probs=50.0

Q ss_pred             HHHHHHHcccCCCCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhc
Q 019861          164 KEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQ  223 (334)
Q Consensus       164 ~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~  223 (334)
                      ...+.+.+.+...++..|||||+|.|.++..|++.+.  +++++|+++.+++..++.+..
T Consensus         8 ~i~~kIv~~~~~~~~d~VlEIGPG~G~LT~~Ll~~~~--~v~aiE~D~~l~~~L~~~~~~   65 (278)
T d1zq9a1           8 LIINSIIDKAALRPTDVVLEVGPGTGNMTVKLLEKAK--KVVACELDPRLVAELHKRVQG   65 (278)
T ss_dssp             HHHHHHHHHTCCCTTCEEEEECCTTSTTHHHHHHHSS--EEEEEESCHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHhCCCCCCEEEEECCCchHHHHHHHhcCC--cEEEEEEccchhHHHHHHHhh
Confidence            3445666777777788999999999999999999986  999999999999999987654

>d2pk7a1 b.171.1.1 (A:3-61) Uncharacterized protein PFL1779 {Pseudomonas fluorescens [TaxId: 294]}

class: All beta proteins
fold: Trm112p-like
superfamily: Trm112p-like
family: Trm112p-like
domain: Uncharacterized protein PFL1779
species: Pseudomonas fluorescens [TaxId: 294]

Probab=97.48  E-value=1.9e-05  Score=50.66  Aligned_cols=44  Identities=25%  Similarity=0.357  Sum_probs=36.9

Q ss_pred             CCceeCCCCCCCccccCCCCcccccccCCcccccccccccccccCcccccccC
Q 019861           69 KNVLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSGVGTHFDMTAAS  121 (334)
Q Consensus        69 ~~~l~CPiC~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~~~~~~~~~~~~~~  121 (334)
                      ++.|.||.|++++....         ..+.+.|..|+..|+..+|++.++.+.
T Consensus         4 L~iL~CP~ck~~L~~~~---------~~~~Lvc~~~~laYPI~dGIPvlL~~e   47 (59)
T d2pk7a1           4 LDILACPICKGPLKLSA---------DKTELISKGAGLAYPIRDGIPVMLESE   47 (59)
T ss_dssp             GGTCCCTTTCCCCEECT---------TSSEEEETTTTEEEEEETTEECCCGGG
T ss_pred             HhheECCCCCCcceEeC---------CCCEEecCCcCccccccCCccccCHHH
Confidence            46799999999987654         236799999999999999999988764

>d2bm8a1 c.66.1.50 (A:2-233) Cephalosporin hydroxylase CmcI {Streptomyces clavuligerus [TaxId: 1901]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CmcI-like
domain: Cephalosporin hydroxylase CmcI
species: Streptomyces clavuligerus [TaxId: 1901]

Probab=97.47  E-value=2e-05  Score=66.03  Aligned_cols=90  Identities=11%  Similarity=0.082  Sum_probs=56.2

Q ss_pred             CCCcEEEECCCcCHHHHHHHH----cCCCCeEEEEeCCHHHHHHHHHHHh------cCC-------CCCCCCceEEEeCc
Q 019861          177 LGGNIIDASCGSGLFSRIFAK----SGLFSLVVALDYSENMLKQCYEFVQ------QES-------NFPKDSIDAVHAGA  239 (334)
Q Consensus       177 ~~~~vLDiGcG~G~~~~~l~~----~~~~~~v~giD~s~~~~~~a~~~~~------~~~-------~~~~~~fD~V~~~~  239 (334)
                      ++.+|||||++.|..+..++.    .+..++++|+|+++...........      .+.       .+.+..+|+|+...
T Consensus        80 KPk~ILEIGv~~GgS~~~~a~~l~~~~~~~kI~giDId~~~~~~~~~~~~~I~~i~gDs~~~~~~~~l~~~~~dlIfID~  159 (232)
T d2bm8a1          80 RPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPASDMENITLHQGDCSDLTTFEHLREMAHPLIFIDN  159 (232)
T ss_dssp             CCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCGGGCTTEEEEECCSSCSGGGGGGSSSCSSEEEEES
T ss_pred             CCCEEEEECCCCchHHHHHHHHHHhcCCCceEEecCcChhhhhhhhccccceeeeecccccHHHHHHHHhcCCCEEEEcC
Confidence            357999999999987665543    3556799999998754332221111      000       13345688887754


Q ss_pred             cccCCCCHH-HHHHHHHHcccCCcEEEEEEe
Q 019861          240 AIHCWSSPS-TGVAEISRVLRPGGVFVGTTY  269 (334)
Q Consensus       240 vl~h~~d~~-~~L~~i~r~LkpgG~lii~~~  269 (334)
                      .  |..+.. ..+ +....|++||++++.+.
T Consensus       160 ~--H~~~~v~~~~-~~~~lLk~GG~iIveD~  187 (232)
T d2bm8a1         160 A--HANTFNIMKW-AVDHLLEEGDYFIIEDM  187 (232)
T ss_dssp             S--CSSHHHHHHH-HHHHTCCTTCEEEECSC
T ss_pred             C--cchHHHHHHH-HHhcccCcCCEEEEEcC
Confidence            3  333322 223 46689999999999764

>d2dula1 c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TRM1-like
domain: N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=97.45  E-value=0.00026  Score=63.21  Aligned_cols=90  Identities=17%  Similarity=0.059  Sum_probs=70.7

Q ss_pred             CCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCCC------------------------------
Q 019861          177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESN------------------------------  226 (334)
Q Consensus       177 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~------------------------------  226 (334)
                      ++.+|||..||+|..+..++.......|+..|+|+..++.+++++.....                              
T Consensus        45 ~~~~vLD~~sasG~rsiRya~E~~~~~V~~nDis~~A~~~i~~N~~lN~~~~~~~~~~~~~~~~~~~~~~~~~Da~~~~~  124 (375)
T d2dula1          45 NPKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLMA  124 (375)
T ss_dssp             CCSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHHHH
T ss_pred             CCCEEEEcCCCccHHHHHHHHhCCCCEEEEecCCHHHHHHHHHHHHhcCccccccccccccccccceeEeehhhhhhhhH
Confidence            35799999999999998766654456899999999999999988653210                              


Q ss_pred             CCCCCceEEEeCccccCCCCHHHHHHHHHHcccCCcEEEEEEec
Q 019861          227 FPKDSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYI  270 (334)
Q Consensus       227 ~~~~~fD~V~~~~vl~h~~d~~~~L~~i~r~LkpgG~lii~~~~  270 (334)
                      -....||+|...-    +..|..+|+.+.+.++.||.|.++.-.
T Consensus       125 ~~~~~fDvIDiDP----fGs~~pfldsAi~a~~~~Gll~vTaTD  164 (375)
T d2dula1         125 ERHRYFHFIDLDP----FGSPMEFLDTALRSAKRRGILGVTATD  164 (375)
T ss_dssp             HSTTCEEEEEECC----SSCCHHHHHHHHHHEEEEEEEEEEECC
T ss_pred             hhcCcCCcccCCC----CCCcHHHHHHHHHHhccCCEEEEEecC
Confidence            0135699888653    567888999999999999999887544

>d2hf1a1 b.171.1.1 (A:2-60) Hypothetical protein CV3345 {Chromobacterium violaceum [TaxId: 536]}

class: All beta proteins
fold: Trm112p-like
superfamily: Trm112p-like
family: Trm112p-like
domain: Hypothetical protein CV3345
species: Chromobacterium violaceum [TaxId: 536]

Probab=97.37  E-value=2.3e-05  Score=50.27  Aligned_cols=44  Identities=20%  Similarity=0.396  Sum_probs=36.7

Q ss_pred             CCceeCCCCCCCccccCCCCcccccccCCcccccccccccccccCcccccccC
Q 019861           69 KNVLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSGVGTHFDMTAAS  121 (334)
Q Consensus        69 ~~~l~CPiC~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~~~~~~~~~~~~~~  121 (334)
                      ++.|+||.|++++....         ..+.+.|..|+..|+..+|++.++.+.
T Consensus         5 L~iL~CP~ck~~L~~~~---------~~~~Lvc~~~~l~YPI~dGIPvlL~~e   48 (59)
T d2hf1a1           5 LEILVCPLCKGPLVFDK---------SKDELICKGDRLAFPIKDGIPMMLESE   48 (59)
T ss_dssp             EEECBCTTTCCBCEEET---------TTTEEEETTTTEEEEEETTEECCCGGG
T ss_pred             hhhhcCCCCCCeeeEeC---------CCCEEecCCcCccccccCCccccCHHH
Confidence            35789999999987643         235799999999999999999988764

>d1m6ex_ c.66.1.35 (X:) Salicylic acid carboxyl methyltransferase (SAMT) {Clarkia breweri [TaxId: 36903]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Salicylic acid carboxyl methyltransferase (SAMT)
domain: Salicylic acid carboxyl methyltransferase (SAMT)
species: Clarkia breweri [TaxId: 36903]

Probab=97.20  E-value=0.0012  Score=58.23  Aligned_cols=134  Identities=16%  Similarity=0.119  Sum_probs=85.3

Q ss_pred             CcEEEECCCcCHHHHHH--------HHc--------CCCCeEEEEeCCHHHHHHHHHHHhcC------------------
Q 019861          179 GNIIDASCGSGLFSRIF--------AKS--------GLFSLVVALDYSENMLKQCYEFVQQE------------------  224 (334)
Q Consensus       179 ~~vLDiGcG~G~~~~~l--------~~~--------~~~~~v~giD~s~~~~~~a~~~~~~~------------------  224 (334)
                      -+|.|+||.+|..+..+        .+.        -+..+|..-|+-.+-....-+.+...                  
T Consensus        53 ~~IADlGCS~G~Ntl~~v~~iI~~i~~~~~~~~~~~~pe~qvf~nDLP~NDFNtLF~~L~~~~~~~~~~f~~gvpGSFY~  132 (359)
T d1m6ex_          53 LAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIENDVDGVCFINGVPGSFYG  132 (359)
T ss_dssp             ECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSCSCTTCEEEEEEESCSSS
T ss_pred             eEEEEeCCCCCccHHHHHHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCcchHHHHHHhccccccCCCCeEEEecCCchhh
Confidence            57999999999876322        111        23446777787654443333332211                  


Q ss_pred             CCCCCCCceEEEeCccccCCCC---------------------------------HHHHHHHHHHcccCCcEEEEEEecc
Q 019861          225 SNFPKDSIDAVHAGAAIHCWSS---------------------------------PSTGVAEISRVLRPGGVFVGTTYIV  271 (334)
Q Consensus       225 ~~~~~~~fD~V~~~~vl~h~~d---------------------------------~~~~L~~i~r~LkpgG~lii~~~~~  271 (334)
                      .-||+++.|++++..+||++..                                 ...+|+.=.+-|+|||++++....+
T Consensus       133 rLfP~~Slh~~~Ss~alHWLS~vP~~l~~n~~~i~~~~~~~~~v~~ay~~Qf~~D~~~FL~~Ra~ELv~GG~mvl~~~gr  212 (359)
T d1m6ex_         133 RLFPRNTLHFIHSSYSLMWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVPGGRMVLTILGR  212 (359)
T ss_dssp             CCSCTTCBSCEEEESCTTBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBCTTCEEEEEEEEC
T ss_pred             hcCCCCceEEeeehhhhhhhhcCCccccCCCCcEEEcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEEEecc
Confidence            1388999999999999999752                                 1357888888899999999988877


Q ss_pred             CCCC-------CchHHHHHHHHHhhh-----------hcCccCCCCHHHHHHHHHhCCC
Q 019861          272 DGPF-------NLIPFSRLLRQNMMQ-----------ISGSYTFLSEREIEDLCRACGL  312 (334)
Q Consensus       272 ~~~~-------~~~~~~~~~~~~~~~-----------~~~~~~~~t~~~l~~ll~~~Gf  312 (334)
                      +...       .....+...+..+..           +.-...+.+.+++++.+++.|.
T Consensus       213 ~~~~~~~~~~~~~~~~l~~al~dmv~eGlI~eek~dsfn~P~Y~ps~eEv~~~ie~~gs  271 (359)
T d1m6ex_         213 RSEDRASTECCLIWQLLAMALNQMVSEGLIEEEKMDKFNIPQYTPSPTEVEAEILKEGS  271 (359)
T ss_dssp             SSSSSSSTTTSTTTHHHHHHHHHHHHTTCSCCSTTGGGCCCCBCCCSHHHHHHHHHTTT
T ss_pred             CCCCCCCCccchHHHHHHHHHHHHHHcCCCCHHHHHhccCccccCCHHHHHHHhccCCC
Confidence            5321       122222222222111           1112346789999999999875

>d2b9ea1 c.66.1.38 (A:133-425) NOL1R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: NOL1R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.90  E-value=0.0036  Score=53.70  Aligned_cols=102  Identities=13%  Similarity=0.067  Sum_probs=66.5

Q ss_pred             HcccCCCCCCcEEEECCCcCHHHHHHHHc-CCCCeEEEEeCCHHHHHHHHHHHhcCCC------------C-----CCCC
Q 019861          170 KGYLKPVLGGNIIDASCGSGLFSRIFAKS-GLFSLVVALDYSENMLKQCYEFVQQESN------------F-----PKDS  231 (334)
Q Consensus       170 ~~~l~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~~v~giD~s~~~~~~a~~~~~~~~~------------~-----~~~~  231 (334)
                      ...+.+.++.+|||+.+|.|.-+.+++.. +....++++|+++.-++..++++...+-            +     ..+.
T Consensus        87 ~~~L~~~~g~~vLD~cAapGgKt~~la~l~~~~~~i~a~d~~~~R~~~l~~~l~r~g~~~~~~~~~d~~~~~~~~~~~~~  166 (293)
T d2b9ea1          87 AMLLDPPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGVSCCELAEEDFLAVSPSDPRYHE  166 (293)
T ss_dssp             HHHHCCCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGSCTTCGGGTT
T ss_pred             ccccCCCccceEEecccchhhHHHHHHHHhcCCceEeeecCCHHHHHHHHHHHHhcCccceeeeehhhhhhcccccccce
Confidence            34456677899999999999977777654 3356899999999999888887664320            1     1256


Q ss_pred             ceEEEeC------ccccCCCC-----------H-------HHHHHHHHHcccCCcEEEEEEeccC
Q 019861          232 IDAVHAG------AAIHCWSS-----------P-------STGVAEISRVLRPGGVFVGTTYIVD  272 (334)
Q Consensus       232 fD~V~~~------~vl~h~~d-----------~-------~~~L~~i~r~LkpgG~lii~~~~~~  272 (334)
                      ||.|++.      .++..-++           .       ...|.... .|+|||.++-++=...
T Consensus       167 fD~VL~DaPCSg~G~~~r~p~~~~~~~~~~~~~~~l~~~Q~~il~~a~-~l~~gG~lvYsTCSl~  230 (293)
T d2b9ea1         167 VHYILLDPSCSGSGMPSRQLEEPGAGTPSPVRLHALAGFQQRALCHAL-TFPSLQRLVYSTCSLC  230 (293)
T ss_dssp             EEEEEECCCCCC------------------CCHHHHHHHHHHHHHHHT-TCTTCCEEEEEESCCC
T ss_pred             eeEEeecCcccchhhhcccchhhccCCcchhhHHHHhhhhHHhHHHhh-hcccccEEEEeeccCC
Confidence            9999974      22221111           0       12344444 4789998887776553

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=96.57  E-value=0.0071  Score=47.44  Aligned_cols=94  Identities=17%  Similarity=0.133  Sum_probs=63.5

Q ss_pred             HHcccCCCCCCcEEEECCCc-CHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCC-------------CCCCCCceE
Q 019861          169 MKGYLKPVLGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES-------------NFPKDSIDA  234 (334)
Q Consensus       169 l~~~l~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~-------------~~~~~~fD~  234 (334)
                      +.+..+..++.+||=+|+|. |..+..+++......++++|.++.-++.+++.-....             .+.++.+|+
T Consensus        20 ~~~~~~~~~g~~VlI~G~G~iG~~~~~~ak~~g~~~v~~~~~~~~k~~~a~~~Ga~~~i~~~~~~~~~~i~~~t~gg~D~   99 (174)
T d1f8fa2          20 CINALKVTPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQLGATHVINSKTQDPVAAIKEITDGGVNF   99 (174)
T ss_dssp             HHTTTCCCTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHHTCSEEEETTTSCHHHHHHHHTTSCEEE
T ss_pred             HHHhhCCCCCCEEEEeCCCHHHhhhhhcccccccceeeeeccHHHHHHHHHHcCCeEEEeCCCcCHHHHHHHHcCCCCcE
Confidence            34455677899999999986 4445555554223478899999999999887422110             122456888


Q ss_pred             EEeCccccCCCCHHHHHHHHHHcccCCcEEEEEE
Q 019861          235 VHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTT  268 (334)
Q Consensus       235 V~~~~vl~h~~d~~~~L~~i~r~LkpgG~lii~~  268 (334)
                      |+-.     ...+ ..++...+.++|+|++++.-
T Consensus       100 vid~-----~G~~-~~~~~~~~~~~~~G~i~~~G  127 (174)
T d1f8fa2         100 ALES-----TGSP-EILKQGVDALGILGKIAVVG  127 (174)
T ss_dssp             EEEC-----SCCH-HHHHHHHHTEEEEEEEEECC
T ss_pred             EEEc-----CCcH-HHHHHHHhcccCceEEEEEe
Confidence            7744     2233 45788999999999988754

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=96.38  E-value=0.0047  Score=49.58  Aligned_cols=97  Identities=15%  Similarity=0.114  Sum_probs=66.3

Q ss_pred             cCCCCCCcEEEECCCc-CHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCC------C--------CCCCCceEEEe
Q 019861          173 LKPVLGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES------N--------FPKDSIDAVHA  237 (334)
Q Consensus       173 l~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~------~--------~~~~~fD~V~~  237 (334)
                      ....++.+||-+|||. |..+..+++......++++|.++.-++.|++.-....      +        .....+|+++-
T Consensus        21 a~v~~G~tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d~~~~rl~~a~~~Ga~~~~~~~~~~~~~~i~~~t~g~g~D~vid  100 (195)
T d1kola2          21 AGVGPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKAQGFEIADLSLDTPLHEQIAALLGEPEVDCAVD  100 (195)
T ss_dssp             TTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCEEEETTSSSCHHHHHHHHHSSSCEEEEEE
T ss_pred             hCCCCCCEEEEECcCHHHHHHHHHHHhhcccceeeecccchhhHhhhhccccEEEeCCCcCHHHHHHHHhCCCCcEEEEE
Confidence            3556789999999998 5566666655434589999999999999887522111      1        12345899886


Q ss_pred             CccccC---------CCCHHHHHHHHHHcccCCcEEEEEEe
Q 019861          238 GAAIHC---------WSSPSTGVAEISRVLRPGGVFVGTTY  269 (334)
Q Consensus       238 ~~vl~h---------~~d~~~~L~~i~r~LkpgG~lii~~~  269 (334)
                      .-..+-         .......|+.+.+.++|||++.+.-.
T Consensus       101 ~vG~~~~~~~~~~~~~~~~~~~l~~~~~~~r~gG~v~~~G~  141 (195)
T d1kola2         101 AVGFEARGHGHEGAKHEAPATVLNSLMQVTRVAGKIGIPGL  141 (195)
T ss_dssp             CCCTTCBCSSTTGGGSBCTTHHHHHHHHHEEEEEEEEECSC
T ss_pred             CccccccCCcccceeecCcHHHHHHHHHHHhcCCEEEEeee
Confidence            432111         11234679999999999999988643

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=96.36  E-value=0.0048  Score=48.76  Aligned_cols=94  Identities=22%  Similarity=0.276  Sum_probs=63.8

Q ss_pred             HHcccCCCCCCcEEEECCCc-CHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcC------CC-----------CCCC
Q 019861          169 MKGYLKPVLGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQE------SN-----------FPKD  230 (334)
Q Consensus       169 l~~~l~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~------~~-----------~~~~  230 (334)
                      +.+.....++.+||-+|+|. |.+...+++.....+|+++|.++..++.+++.-...      ..           ....
T Consensus        20 l~~~~~~~~G~~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~i~~~~~~~   99 (182)
T d1vj0a2          20 FDEYPESFAGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEEIGADLTLNRRETSVEERRKAIMDITHGR   99 (182)
T ss_dssp             HHTCSSCCBTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHHHTTCSEEEETTTSCHHHHHHHHHHHTTTS
T ss_pred             HHHHhCCCCCCEEEEECCCccchhheecccccccccccccccccccccccccccceEEEeccccchHHHHHHHHHhhCCC
Confidence            34444556789999999985 666667776642238999999999999987642110      00           1123


Q ss_pred             CceEEEeCccccCCCCHHHHHHHHHHcccCCcEEEEEE
Q 019861          231 SIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTT  268 (334)
Q Consensus       231 ~fD~V~~~~vl~h~~d~~~~L~~i~r~LkpgG~lii~~  268 (334)
                      .+|+|+-.-     ..+ ..++...+.|++||++++.-
T Consensus       100 g~Dvvid~v-----G~~-~~~~~a~~~l~~~G~iv~~G  131 (182)
T d1vj0a2         100 GADFILEAT-----GDS-RALLEGSELLRRGGFYSVAG  131 (182)
T ss_dssp             CEEEEEECS-----SCT-THHHHHHHHEEEEEEEEECC
T ss_pred             CceEEeecC-----Cch-hHHHHHHHHhcCCCEEEEEe
Confidence            589887442     222 34788899999999987754

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=96.19  E-value=0.0087  Score=46.55  Aligned_cols=90  Identities=17%  Similarity=0.113  Sum_probs=61.8

Q ss_pred             cCCCCCCcEEEECCCc-CHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCC---------CCCCCCceEEEeCcccc
Q 019861          173 LKPVLGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES---------NFPKDSIDAVHAGAAIH  242 (334)
Q Consensus       173 l~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~---------~~~~~~fD~V~~~~vl~  242 (334)
                      .+..++.+||=+|+|. |.++..+++.. ..+++++|.++.-++.+++.-....         ....+.+|+|+-.-.-.
T Consensus        26 ~~~~~G~~VlI~GaG~vG~~a~qlak~~-Ga~~i~~~~~~~~~~~a~~lGad~~i~~~~~~~~~~~~~~~D~vid~~g~~  104 (168)
T d1uufa2          26 WQAGPGKKVGVVGIGGLGHMGIKLAHAM-GAHVVAFTTSEAKREAAKALGADEVVNSRNADEMAAHLKSFDFILNTVAAP  104 (168)
T ss_dssp             TTCCTTCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESSGGGHHHHHHHTCSEEEETTCHHHHHTTTTCEEEEEECCSSC
T ss_pred             hCCCCCCEEEEeccchHHHHHHHHhhcc-cccchhhccchhHHHHHhccCCcEEEECchhhHHHHhcCCCceeeeeeecc
Confidence            4556789999999976 66667777653 3588899999988888876422110         11235699887654322


Q ss_pred             CCCCHHHHHHHHHHcccCCcEEEEEEe
Q 019861          243 CWSSPSTGVAEISRVLRPGGVFVGTTY  269 (334)
Q Consensus       243 h~~d~~~~L~~i~r~LkpgG~lii~~~  269 (334)
                      +      .+....+.|+++|++++.-.
T Consensus       105 ~------~~~~~~~~l~~~G~iv~~G~  125 (168)
T d1uufa2         105 H------NLDDFTTLLKRDGTMTLVGA  125 (168)
T ss_dssp             C------CHHHHHTTEEEEEEEEECCC
T ss_pred             h------hHHHHHHHHhcCCEEEEecc
Confidence            1      26778899999999988643

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.15  E-value=0.023  Score=44.03  Aligned_cols=93  Identities=17%  Similarity=0.129  Sum_probs=62.9

Q ss_pred             cCCCCCCcEEEECCCc-CHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCC-CC---------------CCCCceEE
Q 019861          173 LKPVLGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES-NF---------------PKDSIDAV  235 (334)
Q Consensus       173 l~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~-~~---------------~~~~fD~V  235 (334)
                      .+..++.+||=+|+|. |.+...+++.....+++++|.++.-++.+++.-.... ..               ....+|+|
T Consensus        22 ~~~~~gd~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~~~~rl~~a~~~Ga~~~~~~~~~~~~~~~~~~~~~~g~g~Dvv  101 (171)
T d1pl8a2          22 GGVTLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEIGADLVLQISKESPQEIARKVEGQLGCKPEVT  101 (171)
T ss_dssp             HTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCSEEEECSSCCHHHHHHHHHHHHTSCCSEE
T ss_pred             hCCCCCCEEEEECCCccHHHHHHHHHHcCCceEEeccCCHHHHHHHHHhCCcccccccccccccccccccccCCCCceEE
Confidence            3556788999999987 4455555555323489999999999999886422110 00               12357887


Q ss_pred             EeCccccCCCCHHHHHHHHHHcccCCcEEEEEEecc
Q 019861          236 HAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIV  271 (334)
Q Consensus       236 ~~~~vl~h~~d~~~~L~~i~r~LkpgG~lii~~~~~  271 (334)
                      +-.-     ..+ ..++...+.+++||++++.....
T Consensus       102 id~~-----G~~-~~~~~a~~~~~~gG~iv~~G~~~  131 (171)
T d1pl8a2         102 IECT-----GAE-ASIQAGIYATRSGGTLVLVGLGS  131 (171)
T ss_dssp             EECS-----CCH-HHHHHHHHHSCTTCEEEECSCCC
T ss_pred             Eecc-----CCc-hhHHHHHHHhcCCCEEEEEecCC
Confidence            7543     333 46888999999999998865543

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=96.08  E-value=0.0086  Score=47.02  Aligned_cols=91  Identities=13%  Similarity=0.250  Sum_probs=63.7

Q ss_pred             cCCCCCCcEEEECCCc-CHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcC------CC--------CCCCCceEEEe
Q 019861          173 LKPVLGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQE------SN--------FPKDSIDAVHA  237 (334)
Q Consensus       173 l~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~------~~--------~~~~~fD~V~~  237 (334)
                      .+..++.+||=+|||. |.++..+++.....+|+++|.++.-++.+++.-...      ..        .....+|+|+-
T Consensus        23 a~~~~g~~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d~~~~r~~~a~~lGa~~~i~~~~~~~~~~v~~~t~g~G~D~vid  102 (174)
T d1jqba2          23 ADIEMGSSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSRPICVEAAKFYGATDILNYKNGHIEDQVMKLTNGKGVDRVIM  102 (174)
T ss_dssp             TTCCTTCCEEEECCSHHHHHHHHHHHTTTCSCEEEECCCHHHHHHHHHHTCSEEECGGGSCHHHHHHHHTTTSCEEEEEE
T ss_pred             hCCCCCCEEEEEcCCcchhhhhhhhhcccccccccccchhhhHHHHHhhCccccccccchhHHHHHHHHhhccCcceEEE
Confidence            4566789999999997 777777777642347999999999999888642111      00        11245898875


Q ss_pred             CccccCCCCHHHHHHHHHHcccCCcEEEEEEe
Q 019861          238 GAAIHCWSSPSTGVAEISRVLRPGGVFVGTTY  269 (334)
Q Consensus       238 ~~vl~h~~d~~~~L~~i~r~LkpgG~lii~~~  269 (334)
                      .-.     .+ ..+++..+.|+|+|++++.-.
T Consensus       103 ~~g-----~~-~~~~~a~~~~~~~G~iv~~G~  128 (174)
T d1jqba2         103 AGG-----GS-ETLSQAVKMVKPGGIISNINY  128 (174)
T ss_dssp             CSS-----CT-THHHHHHHHEEEEEEEEECCC
T ss_pred             ccC-----CH-HHHHHHHHHHhcCCEEEEEee
Confidence            432     22 347888899999999988543

>d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: Methyltransferase mboII
species: Moraxella bovis [TaxId: 476]

Probab=96.08  E-value=0.0083  Score=49.65  Aligned_cols=60  Identities=18%  Similarity=0.197  Sum_probs=51.8

Q ss_pred             CCcHHHHHHHHcccCCCCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHh
Q 019861          160 PGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQ  222 (334)
Q Consensus       160 ~~~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~  222 (334)
                      ..|..+.+.+.+... .++..|||.=||+|..+.+..+.+.  +++|+|+++..++.|++++.
T Consensus       196 ~kP~~L~~~lI~~~s-~~gd~VlDpF~GSGTT~~aa~~~~R--~~ig~El~~~y~~~a~~Rl~  255 (256)
T d1g60a_         196 PKPRDLIERIIRASS-NPNDLVLDCFMGSGTTAIVAKKLGR--NFIGCDMNAEYVNQANFVLN  255 (256)
T ss_dssp             CCCHHHHHHHHHHHC-CTTCEEEESSCTTCHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHH
T ss_pred             ccchhHHHHHHHHhC-CCCCEEEECCCCchHHHHHHHHcCC--eEEEEeCCHHHHHHHHHHHc
Confidence            346777777777765 3588999999999999999999987  99999999999999999875

>d1i4wa_ c.66.1.24 (A:) Transcription factor sc-mtTFB {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: Transcription factor sc-mtTFB
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.83  E-value=0.0089  Score=51.87  Aligned_cols=46  Identities=17%  Similarity=0.082  Sum_probs=39.1

Q ss_pred             CCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHh
Q 019861          177 LGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQ  222 (334)
Q Consensus       177 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~  222 (334)
                      .+..|||||+|.|.++..+.+.+...+++++|+++...+..++.+.
T Consensus        43 ~~~~VlEIGPG~G~LT~~Ll~~~~~~~v~~iE~D~~~~~~L~~~~~   88 (322)
T d1i4wa_          43 EELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKFLNAKFE   88 (322)
T ss_dssp             TTCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHHHHHHHHTT
T ss_pred             CCCeEEEECCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHhcc
Confidence            4568999999999999999887433489999999999999887754

>d1booa_ c.66.1.11 (A:) m.PvuII N4 cytosine-specific DNA methyltransferase {Proteus vulgaris [TaxId: 585]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: m.PvuII N4 cytosine-specific DNA methyltransferase
species: Proteus vulgaris [TaxId: 585]

Probab=95.70  E-value=0.0085  Score=51.25  Aligned_cols=62  Identities=11%  Similarity=0.029  Sum_probs=52.9

Q ss_pred             CCCcHHHHHHHHcccCCCCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhc
Q 019861          159 FPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQ  223 (334)
Q Consensus       159 ~~~~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~  223 (334)
                      .+.|..+.+.+.+.... ++..|||.=||+|..+.++...+.  .++|+|++++.++.+++++..
T Consensus       233 t~kP~~L~~rlI~~~s~-~gdiVlDpF~GSGTT~~AA~~lgR--~~Ig~El~~~y~~~a~~Rl~~  294 (320)
T d1booa_         233 ARFPAKLPEFFIRMLTE-PDDLVVDIFGGSNTTGLVAERESR--KWISFEMKPEYVAASAFRFLD  294 (320)
T ss_dssp             SCCCTHHHHHHHHHHCC-TTCEEEETTCTTCHHHHHHHHTTC--EEEEEESCHHHHHHHHGGGSC
T ss_pred             CcCchHHHHHhhhhccc-CCCEEEecCCCCcHHHHHHHHcCC--cEEEEeCCHHHHHHHHHHHHh
Confidence            34567777777776654 588999999999999999999987  999999999999999988765

>d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=95.69  E-value=0.011  Score=46.12  Aligned_cols=123  Identities=15%  Similarity=0.062  Sum_probs=73.2

Q ss_pred             CCCCCcEEEECCCcC-HHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCC-------------CCCCCCceEEEeCcc
Q 019861          175 PVLGGNIIDASCGSG-LFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES-------------NFPKDSIDAVHAGAA  240 (334)
Q Consensus       175 ~~~~~~vLDiGcG~G-~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~-------------~~~~~~fD~V~~~~v  240 (334)
                      ..++.+||-+|+|.. .+...+++......++++|.++.-++.+++.-....             ......+|+|+-.- 
T Consensus        30 ~~~g~~vli~GaG~vG~~~~~~a~~~g~~~vv~~~~~~~k~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~g~d~vid~~-  108 (172)
T d1h2ba2          30 LYPGAYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKEEKLKLAERLGADHVVDARRDPVKQVMELTRGRGVNVAMDFV-  108 (172)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESSHHHHHHHHHTTCSEEEETTSCHHHHHHHHTTTCCEEEEEESS-
T ss_pred             cCCCCEEEEeCCChHHHHHHHHHHhhcCcccccccchhHHHHHHhhcccceeecCcccHHHHHHHhhCCCCceEEEEec-
Confidence            356889999999874 444555544223588999999998888886432110             01124588877543 


Q ss_pred             ccCCCCHHHHHHHHHHcccCCcEEEEEEeccCCCCCchHHHHHHHHHhhhhcCccCCCCHHHHHHHHH
Q 019861          241 IHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLCR  308 (334)
Q Consensus       241 l~h~~d~~~~L~~i~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~l~~ll~  308 (334)
                          ... ..++...+.|++||++++.-...+.   ..+....+.....- . .....+.+++.++++
T Consensus       109 ----g~~-~~~~~a~~~l~~~G~iv~~G~~~~~---~~~~~~l~~k~~~i-~-Gs~~~~~~d~~~~l~  166 (172)
T d1h2ba2         109 ----GSQ-ATVDYTPYLLGRMGRLIIVGYGGEL---RFPTIRVISSEVSF-E-GSLVGNYVELHELVT  166 (172)
T ss_dssp             ----CCH-HHHHHGGGGEEEEEEEEECCCSSCC---CCCHHHHHHTTCEE-E-ECCSCCHHHHHHHHH
T ss_pred             ----Ccc-hHHHHHHHHHhCCCEEEEEeCcccc---cCCHHHHHhCCcEE-E-EEEecCHHHHHHHHH
Confidence                233 3588899999999999986543221   11221111111111 1 224567888877765

>d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=95.65  E-value=0.02  Score=44.30  Aligned_cols=91  Identities=14%  Similarity=0.116  Sum_probs=61.6

Q ss_pred             cCCCCCCcEEEECC-C-cCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcC----C--C--------CCCCCceEEE
Q 019861          173 LKPVLGGNIIDASC-G-SGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQE----S--N--------FPKDSIDAVH  236 (334)
Q Consensus       173 l~~~~~~~vLDiGc-G-~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~----~--~--------~~~~~fD~V~  236 (334)
                      .+..++.+||=+|+ | .|.++..+++......|+++|.++.-++.+++.-...    .  .        ...+.+|+|+
T Consensus        23 ~~~~~g~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~~~~~~~~~d~vi  102 (170)
T d1jvba2          23 ASLDPTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAKRAGADYVINASMQDPLAEIRRITESKGVDAVI  102 (170)
T ss_dssp             TTCCTTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHHHHTCSEEEETTTSCHHHHHHHHTTTSCEEEEE
T ss_pred             hCCCCCCEEEEEeccccceeeeeecccccccccccccccchhhHHHHHHcCCceeeccCCcCHHHHHHHHhhcccchhhh
Confidence            45667889999997 3 3555555555433469999999999998888742111    0  0        1235699888


Q ss_pred             eCccccCCCCHHHHHHHHHHcccCCcEEEEEEe
Q 019861          237 AGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTY  269 (334)
Q Consensus       237 ~~~vl~h~~d~~~~L~~i~r~LkpgG~lii~~~  269 (334)
                      ....      -...++...+.|+|||++++.-.
T Consensus       103 d~~g------~~~~~~~a~~~l~~~G~iv~~G~  129 (170)
T d1jvba2         103 DLNN------SEKTLSVYPKALAKQGKYVMVGL  129 (170)
T ss_dssp             ESCC------CHHHHTTGGGGEEEEEEEEECCS
T ss_pred             cccc------cchHHHhhhhhcccCCEEEEecc
Confidence            6532      23456778899999999987643

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.63  E-value=0.0045  Score=48.29  Aligned_cols=91  Identities=12%  Similarity=0.078  Sum_probs=61.1

Q ss_pred             cCCCCCCcEEEECCCc-CHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcC-------CC---CCCCCceEEEeCccc
Q 019861          173 LKPVLGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQE-------SN---FPKDSIDAVHAGAAI  241 (334)
Q Consensus       173 l~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~-------~~---~~~~~fD~V~~~~vl  241 (334)
                      .+..++.+||-+|+|. |.++..+++.. .++++++|.++..++.+++.-...       ..   ...+.+|+|+..-.-
T Consensus        23 ~~~~~g~~vlI~GaG~vG~~a~q~ak~~-G~~vi~~~~~~~k~~~a~~lGa~~~i~~~~~~~~~~~~~~~~d~vi~~~~~  101 (168)
T d1piwa2          23 NGCGPGKKVGIVGLGGIGSMGTLISKAM-GAETYVISRSSRKREDAMKMGADHYIATLEEGDWGEKYFDTFDLIVVCASS  101 (168)
T ss_dssp             TTCSTTCEEEEECCSHHHHHHHHHHHHH-TCEEEEEESSSTTHHHHHHHTCSEEEEGGGTSCHHHHSCSCEEEEEECCSC
T ss_pred             hCcCCCCEEEEECCCCcchhHHHHhhhc-cccccccccchhHHHHhhccCCcEEeeccchHHHHHhhhcccceEEEEecC
Confidence            3456789999999984 66666666553 359999999999999988742111       00   113569988875332


Q ss_pred             cCCCCHHHHHHHHHHcccCCcEEEEEE
Q 019861          242 HCWSSPSTGVAEISRVLRPGGVFVGTT  268 (334)
Q Consensus       242 ~h~~d~~~~L~~i~r~LkpgG~lii~~  268 (334)
                      .+-.    .+....+.|+|+|++++..
T Consensus       102 ~~~~----~~~~~~~~l~~~G~iv~~G  124 (168)
T d1piwa2         102 LTDI----DFNIMPKAMKVGGRIVSIS  124 (168)
T ss_dssp             STTC----CTTTGGGGEEEEEEEEECC
T ss_pred             Cccc----hHHHHHHHhhccceEEEec
Confidence            2211    1446788999999998864

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=95.60  E-value=0.018  Score=44.58  Aligned_cols=91  Identities=18%  Similarity=0.111  Sum_probs=63.5

Q ss_pred             cCCCCCCcEEEECCCc-CHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCC----CC--------------CCCCce
Q 019861          173 LKPVLGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES----NF--------------PKDSID  233 (334)
Q Consensus       173 l~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~----~~--------------~~~~fD  233 (334)
                      .+..++.+||-+|||. |.+...+++.. ..+++++|.++.-++.+++.-....    ..              ..+.+|
T Consensus        22 ~~~~~g~~vlV~G~G~vG~~~~~~ak~~-Ga~vi~v~~~~~r~~~a~~~ga~~~~~~~~~~~~~~~~~~~~~~~~g~g~D  100 (170)
T d1e3ja2          22 AGVQLGTTVLVIGAGPIGLVSVLAAKAY-GAFVVCTARSPRRLEVAKNCGADVTLVVDPAKEEESSIIERIRSAIGDLPN  100 (170)
T ss_dssp             HTCCTTCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHTTCSEEEECCTTTSCHHHHHHHHHHHSSSCCS
T ss_pred             hCCCCCCEEEEEcccccchhhHhhHhhh-cccccccchHHHHHHHHHHcCCcEEEeccccccccchhhhhhhcccccCCc
Confidence            3556788999999985 66666666654 3599999999999999987432110    00              124578


Q ss_pred             EEEeCccccCCCCHHHHHHHHHHcccCCcEEEEEEec
Q 019861          234 AVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYI  270 (334)
Q Consensus       234 ~V~~~~vl~h~~d~~~~L~~i~r~LkpgG~lii~~~~  270 (334)
                      +|+-.-     .. ...+....+.|+++|++++.-..
T Consensus       101 ~vid~~-----g~-~~~~~~a~~~~~~~G~iv~~G~~  131 (170)
T d1e3ja2         101 VTIDCS-----GN-EKCITIGINITRTGGTLMLVGMG  131 (170)
T ss_dssp             EEEECS-----CC-HHHHHHHHHHSCTTCEEEECSCC
T ss_pred             eeeecC-----CC-hHHHHHHHHHHhcCCceEEEecC
Confidence            887543     22 35688889999999998886544

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=95.59  E-value=0.0099  Score=46.01  Aligned_cols=88  Identities=14%  Similarity=0.105  Sum_probs=58.0

Q ss_pred             cCCCCCCcEEEECCCc-CHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCC--CC-----------CCCCceEEEeC
Q 019861          173 LKPVLGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES--NF-----------PKDSIDAVHAG  238 (334)
Q Consensus       173 l~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~--~~-----------~~~~fD~V~~~  238 (334)
                      .+..++.+||=+|+|. |.+...+++.. ..+++++|.++..++.+++.-....  .-           ..+.+|.|.+.
T Consensus        23 ~~~~~g~~VlV~GaG~vG~~~~~~ak~~-G~~Vi~~~~~~~~~~~a~~~Ga~~~i~~~~~~~~~~~~~~~~g~~~~i~~~  101 (166)
T d1llua2          23 TNARPGQWVAISGIGGLGHVAVQYARAM-GLHVAAIDIDDAKLELARKLGASLTVNARQEDPVEAIQRDIGGAHGVLVTA  101 (166)
T ss_dssp             HTCCTTCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHTTCSEEEETTTSCHHHHHHHHHSSEEEEEECC
T ss_pred             hCCCCCCEEEEeeccccHHHHHHHHHHc-CCccceecchhhHHHhhhccCccccccccchhHHHHHHHhhcCCccccccc
Confidence            4556788999999986 55666666654 3599999999999998886422110  00           01223333332


Q ss_pred             ccccCCCCHHHHHHHHHHcccCCcEEEEEE
Q 019861          239 AAIHCWSSPSTGVAEISRVLRPGGVFVGTT  268 (334)
Q Consensus       239 ~vl~h~~d~~~~L~~i~r~LkpgG~lii~~  268 (334)
                      .      .+ ..+....+.|++||++++.-
T Consensus       102 ~------~~-~~~~~~~~~l~~~G~iv~~G  124 (166)
T d1llua2         102 V------SN-SAFGQAIGMARRGGTIALVG  124 (166)
T ss_dssp             S------CH-HHHHHHHTTEEEEEEEEECC
T ss_pred             c------cc-hHHHHHHHHhcCCcEEEEEE
Confidence            2      23 45788899999999988854

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=95.29  E-value=0.031  Score=43.61  Aligned_cols=93  Identities=14%  Similarity=0.077  Sum_probs=65.2

Q ss_pred             cccCCCCCCcEEEECCCc-CHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcC-------CC--------CCCCCceE
Q 019861          171 GYLKPVLGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQE-------SN--------FPKDSIDA  234 (334)
Q Consensus       171 ~~l~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~-------~~--------~~~~~fD~  234 (334)
                      +..+..++.+||=+|||. |.++..+++......++.+|.++.-++.+++.-...       ..        ...+.+|+
T Consensus        22 ~~a~v~~G~~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d~~~~r~~~a~~~Ga~~~i~~~~~~~~~~~~~~~~~~~G~d~  101 (174)
T d1e3ia2          22 NTAKVTPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKALGATDCLNPRELDKPVQDVITELTAGGVDY  101 (174)
T ss_dssp             TTSCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHHTSCBSE
T ss_pred             HhhCCCCCCEEEEECCChHHHHHHHHHHHhCCceeeeeccchHHHHHHHHhCCCcccCCccchhhhhhhHhhhhcCCCcE
Confidence            344566789999999998 777777777753458999999999988888742111       00        11345788


Q ss_pred             EEeCccccCCCCHHHHHHHHHHcccCC-cEEEEEEe
Q 019861          235 VHAGAAIHCWSSPSTGVAEISRVLRPG-GVFVGTTY  269 (334)
Q Consensus       235 V~~~~vl~h~~d~~~~L~~i~r~Lkpg-G~lii~~~  269 (334)
                      |+-.     ...+ ..+.+..+.|++| |++++.-.
T Consensus       102 vie~-----~G~~-~~~~~a~~~~~~g~G~~v~vG~  131 (174)
T d1e3ia2         102 SLDC-----AGTA-QTLKAAVDCTVLGWGSCTVVGA  131 (174)
T ss_dssp             EEES-----SCCH-HHHHHHHHTBCTTTCEEEECCC
T ss_pred             EEEe-----cccc-hHHHHHHHHhhcCCeEEEecCC
Confidence            8643     3344 4588899999996 99888654

>d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.14  E-value=0.028  Score=43.72  Aligned_cols=90  Identities=17%  Similarity=0.103  Sum_probs=62.2

Q ss_pred             HcccCCCCCCcEEEECC--CcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcC------CC--------CCCCCce
Q 019861          170 KGYLKPVLGGNIIDASC--GSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQE------SN--------FPKDSID  233 (334)
Q Consensus       170 ~~~l~~~~~~~vLDiGc--G~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~------~~--------~~~~~fD  233 (334)
                      .+..+..++.+||-.|+  |.|..+..+++.. ..++++++-+++..+.+++.-...      ..        ...+.+|
T Consensus        21 ~~~~~~~~g~~VlV~Ga~G~vG~~aiq~a~~~-G~~vi~~~~~~~~~~~~~~~Ga~~vi~~~~~~~~~~i~~~t~~~g~d   99 (174)
T d1yb5a2          21 IHSACVKAGESVLVHGASGGVGLAACQIARAY-GLKILGTAGTEEGQKIVLQNGAHEVFNHREVNYIDKIKKYVGEKGID   99 (174)
T ss_dssp             HTTSCCCTTCEEEEETCSSHHHHHHHHHHHHT-TCEEEEEESSHHHHHHHHHTTCSEEEETTSTTHHHHHHHHHCTTCEE
T ss_pred             HHHhCCCCCCEEEEEecccccccccccccccc-CcccccccccccccccccccCcccccccccccHHHHhhhhhccCCce
Confidence            34445667899999996  3466676666664 359999998988888887531110      00        1245699


Q ss_pred             EEEeCccccCCCCHHHHHHHHHHcccCCcEEEEE
Q 019861          234 AVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGT  267 (334)
Q Consensus       234 ~V~~~~vl~h~~d~~~~L~~i~r~LkpgG~lii~  267 (334)
                      +|+..-.       ...+....++|+|+|+++..
T Consensus       100 ~v~d~~g-------~~~~~~~~~~l~~~G~iv~~  126 (174)
T d1yb5a2         100 IIIEMLA-------NVNLSKDLSLLSHGGRVIVV  126 (174)
T ss_dssp             EEEESCH-------HHHHHHHHHHEEEEEEEEEC
T ss_pred             EEeeccc-------HHHHHHHHhccCCCCEEEEE
Confidence            9886532       24588889999999998885

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=95.10  E-value=0.042  Score=42.89  Aligned_cols=95  Identities=13%  Similarity=0.035  Sum_probs=60.5

Q ss_pred             HcccCCCCCCcEEEECCCcC-HHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCC------C---------CCCCCce
Q 019861          170 KGYLKPVLGGNIIDASCGSG-LFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES------N---------FPKDSID  233 (334)
Q Consensus       170 ~~~l~~~~~~~vLDiGcG~G-~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~------~---------~~~~~fD  233 (334)
                      .+..+..++.+||=+|+|.. .+...+++.....+|+++|.+++-++.|++.-....      .         ...+.+|
T Consensus        22 ~~~~~~~~g~tVlI~G~GgvGl~ai~~ak~~G~~~Vi~vd~~~~kl~~Ak~~GA~~~in~~~~~~~~~~~~~~~~g~G~d  101 (176)
T d1d1ta2          22 VKTGKVKPGSTCVVFGLGGVGLSVIMGCKSAGASRIIGIDLNKDKFEKAMAVGATECISPKDSTKPISEVLSEMTGNNVG  101 (176)
T ss_dssp             HTTSCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHHTCSEEECGGGCSSCHHHHHHHHHTSCCC
T ss_pred             HHhhCCCCCCEEEEECCCchhHHHHHHHHHcCCceEEEecCcHHHHHHHHhcCCcEEECccccchHHHHHHHHhccccce
Confidence            34445667899999999874 444444444323689999999999999998633211      0         1124577


Q ss_pred             EEEeCccccCCCCHHHHHHHHHHcccCCcEEEEEEe
Q 019861          234 AVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTY  269 (334)
Q Consensus       234 ~V~~~~vl~h~~d~~~~L~~i~r~LkpgG~lii~~~  269 (334)
                      +|+-.     ...+..+...+..+++.+|++++.-.
T Consensus       102 ~vi~~-----~g~~~~~~~a~~~~~~~~G~~v~vG~  132 (176)
T d1d1ta2         102 YTFEV-----IGHLETMIDALASCHMNYGTSVVVGV  132 (176)
T ss_dssp             EEEEC-----SCCHHHHHHHHTTSCTTTCEEEECSC
T ss_pred             EEEEe-----CCchHHHHHHHHHhhcCCeEEEEEEc
Confidence            77644     33454444455555567688887543

>d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: m.RsrI N6 adenosine-specific DNA methyltransferase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=94.98  E-value=0.024  Score=47.29  Aligned_cols=61  Identities=18%  Similarity=0.197  Sum_probs=51.5

Q ss_pred             CcHHHHHHHHcccCCCCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcC
Q 019861          161 GPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQE  224 (334)
Q Consensus       161 ~~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~  224 (334)
                      .|..+.+.+.+... .++..|||.=+|+|..+.+....+.  +++|+|+++...+.|++++...
T Consensus       192 kP~~L~~~~I~~~s-~~gdiVLDpF~GSGTT~~Aa~~lgR--~~ig~El~~~y~~~a~~Ri~~~  252 (279)
T d1eg2a_         192 KPAAVIERLVRALS-HPGSTVLDFFAGSGVTARVAIQEGR--NSICTDAAPVFKEYYQKQLTFL  252 (279)
T ss_dssp             CCHHHHHHHHHHHS-CTTCEEEETTCTTCHHHHHHHHHTC--EEEEEESSTHHHHHHHHHHHHC
T ss_pred             cchhHHHHHHHhhc-CCCCEEEecCCCCcHHHHHHHHhCC--eEEEEeCCHHHHHHHHHHHHHh
Confidence            45667777776654 3588999999999999999999987  9999999999999999987653

>d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

Probab=94.80  E-value=0.056  Score=42.04  Aligned_cols=94  Identities=13%  Similarity=0.032  Sum_probs=58.1

Q ss_pred             HcccCCCCCCcEEEECCCcC-HHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcC------CC---------CCCCCce
Q 019861          170 KGYLKPVLGGNIIDASCGSG-LFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQE------SN---------FPKDSID  233 (334)
Q Consensus       170 ~~~l~~~~~~~vLDiGcG~G-~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~------~~---------~~~~~fD  233 (334)
                      .+..+..++.+||=+|||.. .+...+++......|+++|.++.-++.+++.-...      .+         ...+.+|
T Consensus        20 ~~~a~~~~G~~VlV~GaGgvGl~a~~~ak~~G~~~Vi~~d~~~~kl~~a~~lGa~~~i~~~~~d~~~~~~~~~~~~~G~d   99 (174)
T d1p0fa2          20 VNTAKVTPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIELGATECLNPKDYDKPIYEVICEKTNGGVD   99 (174)
T ss_dssp             HTTTCCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHTTSCBS
T ss_pred             HHhhCCCCCCEEEEECCCchhHHHHHHHHHcCCceeeccCChHHHHHHHHHcCCcEEEcCCCchhHHHHHHHHhcCCCCc
Confidence            34445677999999999874 34444444422358999999999999998742111      00         1124578


Q ss_pred             EEEeCccccCCCCHHHHHHHHHHcc-cCCcEEEEEEe
Q 019861          234 AVHAGAAIHCWSSPSTGVAEISRVL-RPGGVFVGTTY  269 (334)
Q Consensus       234 ~V~~~~vl~h~~d~~~~L~~i~r~L-kpgG~lii~~~  269 (334)
                      +|+-.-     ..+. .+......+ +++|.+++.-.
T Consensus       100 ~vid~~-----g~~~-~~~~~~~~~~~~~G~~v~vG~  130 (174)
T d1p0fa2         100 YAVECA-----GRIE-TMMNALQSTYCGSGVTVVLGL  130 (174)
T ss_dssp             EEEECS-----CCHH-HHHHHHHTBCTTTCEEEECCC
T ss_pred             EEEEcC-----CCch-HHHHHHHHHHHhcCceEEEEE
Confidence            877543     3443 455555555 55688777553

>d2uyoa1 c.66.1.57 (A:14-310) Putative methyltransferase ML2640 {Mycobacterium leprae [TaxId: 1769]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: ML2640-like
domain: Putative methyltransferase ML2640
species: Mycobacterium leprae [TaxId: 1769]

Probab=94.35  E-value=0.2  Score=42.34  Aligned_cols=137  Identities=12%  Similarity=-0.005  Sum_probs=79.0

Q ss_pred             CcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCC-------------------------CCCCCCce
Q 019861          179 GNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES-------------------------NFPKDSID  233 (334)
Q Consensus       179 ~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~-------------------------~~~~~~fD  233 (334)
                      ..|+.+|||-=.....+. ......++-+|. +.+++.-++.+....                         .+....-=
T Consensus        91 ~qvV~LGaGlDTr~~Rl~-~~~~~~~~EvD~-p~vi~~K~~~l~~~~~~~~~~~~~v~~Dl~~~~~~~L~~~g~d~~~pt  168 (297)
T d2uyoa1          91 RQFVILASGLDSRAYRLD-WPTGTTVYEIDQ-PKVLAYKSTTLAEHGVTPTADRREVPIDLRQDWPPALRSAGFDPSART  168 (297)
T ss_dssp             CEEEEETCTTCCHHHHSC-CCTTCEEEEEEC-HHHHHHHHHHHHHTTCCCSSEEEEEECCTTSCHHHHHHHTTCCTTSCE
T ss_pred             CeEEEeCcccCChhhhcC-CCcCceEEEcCC-hHHHHHHHHHHHhcCCCCCceEEEecccccchHHHHHHhcCCCCCCCE
Confidence            457779999766554442 234457777774 777776666554321                         12233445


Q ss_pred             EEEeCccccCCCC--HHHHHHHHHHcccCCcEEEEEEeccCCCCCchHHHHHHHHHhhhh-------cC--ccCCCCHHH
Q 019861          234 AVHAGAAIHCWSS--PSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQI-------SG--SYTFLSERE  302 (334)
Q Consensus       234 ~V~~~~vl~h~~d--~~~~L~~i~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~-------~~--~~~~~t~~~  302 (334)
                      ++++-.++.+++.  ...+|+.+.+...||+.+++...+.....................       ..  .....+..+
T Consensus       169 l~i~EGvl~YL~~~~~~~ll~~i~~~~~~GS~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  248 (297)
T d2uyoa1         169 AWLAEGLLMYLPATAQDGLFTEIGGLSAVGSRIAVETSPLHGDEWREQMQLRFRRVSDALGFEQAVDVQELIYHDENRAV  248 (297)
T ss_dssp             EEEECSCGGGSCHHHHHHHHHHHHHTCCTTCEEEEECCCTTCSHHHHHHHHHHHHHHC-----------CCTTCCTTCCC
T ss_pred             EEEEccccccCCHHHHHHHHHHHHHhCCCCCEEEEEecccccchhHHHHHHHHHHHHhhhccccCCChHhhccCCCchhh
Confidence            6667778888874  358899999999999999887554322111111111111111000       00  112234467


Q ss_pred             HHHHHHhCCCcEEEE
Q 019861          303 IEDLCRACGLVDFKC  317 (334)
Q Consensus       303 l~~ll~~~Gf~~v~~  317 (334)
                      ...+|++.||++...
T Consensus       249 ~~~~l~~~Gw~~~~~  263 (297)
T d2uyoa1         249 VADWLNRHGWRATAQ  263 (297)
T ss_dssp             HHHHHTTTTEEEEEE
T ss_pred             HHHHHHhCCCEEEEe
Confidence            889999999987653

>d2akla2 g.41.3.5 (A:3-40) Hypothetical protein PA0128, N-terminal domain {Pseudomonas aeruginosa [TaxId: 287]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Zinc beta-ribbon
family: PhnA zinc-binding domain
domain: Hypothetical protein PA0128, N-terminal domain
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=94.23  E-value=0.011  Score=33.29  Aligned_cols=29  Identities=31%  Similarity=0.734  Sum_probs=22.8

Q ss_pred             eCCCCCCCccccCCCCcccccccCCcccccccccccccc
Q 019861           73 ACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSGV  111 (334)
Q Consensus        73 ~CPiC~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~~~~  111 (334)
                      .||.|++...-..          ...+.|+.|++.+...
T Consensus         5 ~CP~C~seytYed----------g~l~vCPeC~hEW~~~   33 (38)
T d2akla2           5 PCPQCNSEYTYED----------GALLVCPECAHEWSPN   33 (38)
T ss_dssp             CCTTTCCCCCEEC----------SSSEEETTTTEEECTT
T ss_pred             cCCCCCCcceEcC----------CCEEECCcccCcCCcc
Confidence            6999999765543          2689999999988654

>d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Aquifex aeolicus [TaxId: 63363]

Probab=93.91  E-value=0.083  Score=40.56  Aligned_cols=83  Identities=14%  Similarity=0.215  Sum_probs=57.6

Q ss_pred             cEEEECCCc-C-HHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCC------CCCCCCceEEEeCccccCCCCHHHHH
Q 019861          180 NIIDASCGS-G-LFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES------NFPKDSIDAVHAGAAIHCWSSPSTGV  251 (334)
Q Consensus       180 ~vLDiGcG~-G-~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~------~~~~~~fD~V~~~~vl~h~~d~~~~L  251 (334)
                      +|+=||||. | .++..|.+.++..+++|+|.++..++.+++.-.-..      ...+...|+|+..--..   .-..++
T Consensus         3 ~I~IIG~G~mG~sla~~L~~~g~~~~I~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~dlIila~p~~---~~~~vl   79 (171)
T d2g5ca2           3 NVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGIIDEGTTSIAKVEDFSPDFVMLSSPVR---TFREIA   79 (171)
T ss_dssp             EEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTTSCSEEESCGGGGGGTCCSEEEECSCHH---HHHHHH
T ss_pred             EEEEEccCHHHHHHHHHHHhcCCCeEEEEEECChHHHHHHHHhhcchhhhhhhhhhhccccccccccCCch---hhhhhh
Confidence            578899986 3 567778888877799999999999999887532111      12234578888664221   234678


Q ss_pred             HHHHHcccCCcEEE
Q 019861          252 AEISRVLRPGGVFV  265 (334)
Q Consensus       252 ~~i~r~LkpgG~li  265 (334)
                      .++...++++..++
T Consensus        80 ~~l~~~~~~~~ii~   93 (171)
T d2g5ca2          80 KKLSYILSEDATVT   93 (171)
T ss_dssp             HHHHHHSCTTCEEE
T ss_pred             hhhhcccccccccc
Confidence            88999998876544

>d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: L-alanine dehydrogenase
species: Phormidium lapideum [TaxId: 32060]

Probab=93.46  E-value=0.055  Score=41.76  Aligned_cols=88  Identities=16%  Similarity=0.123  Sum_probs=63.8

Q ss_pred             CCCcEEEECCCcC-HHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCCCC----------CCCCceEEEeCccccCCC
Q 019861          177 LGGNIIDASCGSG-LFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNF----------PKDSIDAVHAGAAIHCWS  245 (334)
Q Consensus       177 ~~~~vLDiGcG~G-~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~----------~~~~fD~V~~~~vl~h~~  245 (334)
                      ++.+|+=||+|.- ..+...+.. ..+.|+.+|.++..+++.+..+......          .-...|+|+..-.+---+
T Consensus        31 ~pa~V~ViGaGvaG~~A~~~A~~-lGA~V~~~D~~~~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~aDivI~aalipG~~  109 (168)
T d1pjca1          31 KPGKVVILGGGVVGTEAAKMAVG-LGAQVQIFDINVERLSYLETLFGSRVELLYSNSAEIETAVAEADLLIGAVLVPGRR  109 (168)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHH-TTCEEEEEESCHHHHHHHHHHHGGGSEEEECCHHHHHHHHHTCSEEEECCCCTTSS
T ss_pred             CCcEEEEECCChHHHHHHHHHhh-CCCEEEEEeCcHHHHHHHHHhhcccceeehhhhhhHHHhhccCcEEEEeeecCCcc
Confidence            5689999999984 444444443 2469999999999999888766543210          013589999987766555


Q ss_pred             CHHHHHHHHHHcccCCcEEE
Q 019861          246 SPSTGVAEISRVLRPGGVFV  265 (334)
Q Consensus       246 d~~~~L~~i~r~LkpgG~li  265 (334)
                      -|.-+=+++.+.+|||.+++
T Consensus       110 aP~lIt~~mv~~Mk~GSVIV  129 (168)
T d1pjca1         110 APILVPASLVEQMRTGSVIV  129 (168)
T ss_dssp             CCCCBCHHHHTTSCTTCEEE
T ss_pred             cCeeecHHHHhhcCCCcEEE
Confidence            66666788999999998765

>d1dl6a_ g.41.3.1 (A:) Transcription initiation factor TFIIB, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Zinc beta-ribbon
family: Transcriptional factor domain
domain: Transcription initiation factor TFIIB, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.42  E-value=0.023  Score=35.75  Aligned_cols=33  Identities=12%  Similarity=0.245  Sum_probs=23.7

Q ss_pred             CCCceeCCCCCCCccccCCCCcccccccCCccccccccccc
Q 019861           68 SKNVLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTY  108 (334)
Q Consensus        68 ~~~~l~CPiC~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~  108 (334)
                      ....+.||.|+++......        ..+.+.|..||.+.
T Consensus         8 ~~~~~~Cp~Cgs~~ii~D~--------~~Ge~vC~~CG~Vl   40 (58)
T d1dl6a_           8 ALPRVTCPNHPDAILVEDY--------RAGDMICPECGLVV   40 (58)
T ss_dssp             CCSCCSBTTBSSSCCEECS--------SSCCEECTTTCCEE
T ss_pred             cccccCCCCCCCCCEEEEC--------CCCcEecccCCCEe
Confidence            4466899999997543221        33679999999865

>d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=93.37  E-value=0.09  Score=40.14  Aligned_cols=124  Identities=16%  Similarity=0.112  Sum_probs=70.4

Q ss_pred             CCCCCCcEEEECCCcC-HHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCC------CCC------CCCceEEEeCcc
Q 019861          174 KPVLGGNIIDASCGSG-LFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES------NFP------KDSIDAVHAGAA  240 (334)
Q Consensus       174 ~~~~~~~vLDiGcG~G-~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~------~~~------~~~fD~V~~~~v  240 (334)
                      +..++.+||=+|+|.- .....+++.. ..+++++|.++.-++.+++.-....      .+.      ...+|.++...+
T Consensus        24 ~~~~g~~vlv~G~G~iG~~a~~~a~~~-g~~v~~~~~~~~r~~~~k~~Ga~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  102 (168)
T d1rjwa2          24 GAKPGEWVAIYGIGGLGHVAVQYAKAM-GLNVVAVDIGDEKLELAKELGADLVVNPLKEDAAKFMKEKVGGVHAAVVTAV  102 (168)
T ss_dssp             TCCTTCEEEEECCSTTHHHHHHHHHHT-TCEEEEECSCHHHHHHHHHTTCSEEECTTTSCHHHHHHHHHSSEEEEEESSC
T ss_pred             CCCCCCEEEEeecccchhhhhHHHhcC-CCeEeccCCCHHHhhhhhhcCcceecccccchhhhhcccccCCCceEEeecC
Confidence            4567889999999874 4444444443 3599999999999998877421110      000      122444443322


Q ss_pred             ccCCCCHHHHHHHHHHcccCCcEEEEEEeccCCCCCchHHHHHHHHHhhhhcCccCCCCHHHHHHHHH
Q 019861          241 IHCWSSPSTGVAEISRVLRPGGVFVGTTYIVDGPFNLIPFSRLLRQNMMQISGSYTFLSEREIEDLCR  308 (334)
Q Consensus       241 l~h~~d~~~~L~~i~r~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~l~~ll~  308 (334)
                           . ...+....+.|+|+|.+++.-...+.  ...+....+..... .. ....++.+++.++++
T Consensus       103 -----~-~~~~~~a~~~l~~~G~i~~~g~~~~~--~~~~~~~~~~~~~~-i~-gs~~~~~~~~~~~l~  160 (168)
T d1rjwa2         103 -----S-KPAFQSAYNSIRRGGACVLVGLPPEE--MPIPIFDTVLNGIK-II-GSIVGTRKDLQEALQ  160 (168)
T ss_dssp             -----C-HHHHHHHHHHEEEEEEEEECCCCSSE--EEEEHHHHHHTTCE-EE-ECCSCCHHHHHHHHH
T ss_pred             -----C-HHHHHHHHHHhccCCceEecccccCC--CCCCHHHHHHCCcE-EE-EEeeCCHHHHHHHHH
Confidence                 2 34688999999999998886433221  12222222211111 11 123457777777765

>d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: B. subtilis YhfP homologue
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=93.11  E-value=0.13  Score=40.00  Aligned_cols=91  Identities=12%  Similarity=-0.010  Sum_probs=62.0

Q ss_pred             cCCCCCCcEEEECCCc--CHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcC------------CCCCCCCceEEEeC
Q 019861          173 LKPVLGGNIIDASCGS--GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQE------------SNFPKDSIDAVHAG  238 (334)
Q Consensus       173 l~~~~~~~vLDiGcG~--G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~------------~~~~~~~fD~V~~~  238 (334)
                      ....++.+||=.|.+.  |.++.++++.. ..+|+++.-+++-.+.+++.-...            .....+.+|+|+-.
T Consensus        27 g~~~~g~~VLI~gaaGGVG~~aiQlak~~-Ga~Viat~~s~~k~~~~~~lGa~~vi~~~~~~~~~~~~~~~~gvD~vid~  105 (176)
T d1xa0a2          27 GLTPERGPVLVTGATGGVGSLAVSMLAKR-GYTVEASTGKAAEHDYLRVLGAKEVLAREDVMAERIRPLDKQRWAAAVDP  105 (176)
T ss_dssp             TCCGGGCCEEESSTTSHHHHHHHHHHHHT-TCCEEEEESCTTCHHHHHHTTCSEEEECC---------CCSCCEEEEEEC
T ss_pred             CCCCCCCEEEEEeccchHHHHHHHHHHHc-CCceEEecCchHHHHHHHhcccceeeecchhHHHHHHHhhccCcCEEEEc
Confidence            3445578899988654  57777777764 458999988888888887631110            01234678987754


Q ss_pred             ccccCCCCHHHHHHHHHHcccCCcEEEEEEecc
Q 019861          239 AAIHCWSSPSTGVAEISRVLRPGGVFVGTTYIV  271 (334)
Q Consensus       239 ~vl~h~~d~~~~L~~i~r~LkpgG~lii~~~~~  271 (334)
                      -.     ..  .+.+..+.|++||+++......
T Consensus       106 vg-----g~--~~~~~l~~l~~~Griv~~G~~~  131 (176)
T d1xa0a2         106 VG-----GR--TLATVLSRMRYGGAVAVSGLTG  131 (176)
T ss_dssp             ST-----TT--THHHHHHTEEEEEEEEECSCCS
T ss_pred             CC-----ch--hHHHHHHHhCCCceEEEeeccc
Confidence            32     11  3888999999999999876654

>d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

Probab=93.00  E-value=0.25  Score=37.92  Aligned_cols=94  Identities=12%  Similarity=0.019  Sum_probs=59.2

Q ss_pred             HcccCCCCCCcEEEECCCcCH-HHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCC--------C-------CCCCCce
Q 019861          170 KGYLKPVLGGNIIDASCGSGL-FSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES--------N-------FPKDSID  233 (334)
Q Consensus       170 ~~~l~~~~~~~vLDiGcG~G~-~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~--------~-------~~~~~fD  233 (334)
                      .+..+..++.+||=+|+|.+. ....+++......|+++|.++.-.+.+++.-....        .       ...+.+|
T Consensus        21 ~~~~~vk~GdtVlV~GaGG~G~~~~~~~~~~g~~~Vi~~~~~~~k~~~a~~~Ga~~~i~~~~~~~~~~~~~~~~~~~G~D  100 (176)
T d2jhfa2          21 VKVAKVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVGATECVNPQDYKKPIQEVLTEMSNGGVD  100 (176)
T ss_dssp             HTTTCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHTTSCBS
T ss_pred             HHhhCCCCCCEEEEECCCCcHHHHHHHHHHcCCceEEeecCcHHHHHHHHHhCCeeEEecCCchhHHHHHHHHHhcCCCC
Confidence            344566779999999997643 44444444434699999999999998887532210        0       1134688


Q ss_pred             EEEeCccccCCCCHHHHHHHHHHcccCC-cEEEEEEe
Q 019861          234 AVHAGAAIHCWSSPSTGVAEISRVLRPG-GVFVGTTY  269 (334)
Q Consensus       234 ~V~~~~vl~h~~d~~~~L~~i~r~Lkpg-G~lii~~~  269 (334)
                      +|+-...     .+ ..++.....++++ |.+++...
T Consensus       101 ~vid~~G-----~~-~~~~~a~~~~~~~~g~~~~~~~  131 (176)
T d2jhfa2         101 FSFEVIG-----RL-DTMVTALSCCQEAYGVSVIVGV  131 (176)
T ss_dssp             EEEECSC-----CH-HHHHHHHHHBCTTTCEEEECSC
T ss_pred             EEEecCC-----ch-hHHHHHHHHHhcCCcceEEecC
Confidence            8876543     22 3456667777776 55555443

>d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Nicotinamide nucleotide transhydrogenase dI component
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=92.86  E-value=0.046  Score=42.87  Aligned_cols=90  Identities=18%  Similarity=0.137  Sum_probs=62.9

Q ss_pred             CCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCCCC--------C-------------------
Q 019861          176 VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQESNF--------P-------------------  228 (334)
Q Consensus       176 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~--------~-------------------  228 (334)
                      .++.+||=||+|.-.+-......+..+.|+.+|.++..+++.++........        .                   
T Consensus        27 V~pa~VvViGaGvaG~~Aa~~A~~lGA~V~v~D~~~~~~~~l~~l~~~~i~~~~~~~~~~~~~~gyA~~~s~~~~~~~~~  106 (183)
T d1l7da1          27 VPPARVLVFGVGVAGLQAIATAKRLGAVVMATDVRAATKEQVESLGGKFITVDDEAMKTAETAGGYAKEMGEEFRKKQAE  106 (183)
T ss_dssp             ECCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCSTTHHHHHHTTCEECCC-----------------------CCHHH
T ss_pred             cCCcEEEEEcCcHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHhhcceEEEeccccccccccccchhhcCHHHHHHHHH
Confidence            3568999999998544333333333569999999999888888654321100        0                   


Q ss_pred             -----CCCceEEEeCccccCCCCHHHHHHHHHHcccCCcEEE
Q 019861          229 -----KDSIDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFV  265 (334)
Q Consensus       229 -----~~~fD~V~~~~vl~h~~d~~~~L~~i~r~LkpgG~li  265 (334)
                           -...|+|+....+.--+-|.-+=+++.+.+|||.+++
T Consensus       107 ~l~~~l~~aDlVI~talipG~~aP~lit~~mv~~Mk~GSVIV  148 (183)
T d1l7da1         107 AVLKELVKTDIAITTALIPGKPAPVLITEEMVTKMKPGSVII  148 (183)
T ss_dssp             HHHHHHTTCSEEEECCCCTTSCCCCCSCHHHHTTSCTTCEEE
T ss_pred             HHHHHHHhhhhheeeeecCCcccceeehHHHHHhcCCCcEEE
Confidence                 1258999988777666667666788999999998766

>d2oyra1 c.66.1.55 (A:1-250) Hypothetical protein YhiQ {Shigella flexneri [TaxId: 623]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhiQ-like
domain: Hypothetical protein YhiQ
species: Shigella flexneri [TaxId: 623]

Probab=92.53  E-value=0.18  Score=41.51  Aligned_cols=40  Identities=20%  Similarity=0.194  Sum_probs=34.4

Q ss_pred             CcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHH
Q 019861          179 GNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEF  220 (334)
Q Consensus       179 ~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~  220 (334)
                      .+|||.-+|.|..+..++..|.  +|+++|-++......++.
T Consensus        90 ~~VlD~TaGlG~Da~vlA~~G~--~V~~iEr~p~l~~ll~d~  129 (250)
T d2oyra1          90 PDVVDATAGLGRDAFVLASVGC--RVRMLERNPVVAALLDDG  129 (250)
T ss_dssp             CCEEETTCTTCHHHHHHHHHTC--CEEEEECCHHHHHHHHHH
T ss_pred             CEEEECCCcccHHHHHHHhCCC--EEEEEccCHHHHHHHHHH
Confidence            4899999999999999999986  999999999766655543

>d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Escherichia coli [TaxId: 562]

Probab=92.51  E-value=0.21  Score=38.41  Aligned_cols=94  Identities=9%  Similarity=0.017  Sum_probs=63.7

Q ss_pred             HHcccCCCCCCcEEEECCCc--CHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcC------CC--------CCCCCc
Q 019861          169 MKGYLKPVLGGNIIDASCGS--GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQE------SN--------FPKDSI  232 (334)
Q Consensus       169 l~~~l~~~~~~~vLDiGcG~--G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~------~~--------~~~~~f  232 (334)
                      +.+..+..++.+||=.|+|.  |.++..+++.. ..++++++.++.-.+.+++.-...      .+        -....+
T Consensus        20 l~~~~~l~~g~~Vlv~ga~g~vG~~~iqlak~~-Ga~Vi~~~~s~~k~~~~~~lGa~~vi~~~~~d~~~~v~~~t~g~g~   98 (179)
T d1qora2          20 LRKTYEIKPDEQFLFHAAAGGVGLIACQWAKAL-GAKLIGTVGTAQKAQSALKAGAWQVINYREEDLVERLKEITGGKKV   98 (179)
T ss_dssp             HHTTSCCCTTCEEEESSTTBHHHHHHHHHHHHH-TCEEEEEESSHHHHHHHHHHTCSEEEETTTSCHHHHHHHHTTTCCE
T ss_pred             HHHHhCCCCCCEEEEEccccccchHHHHHHHHh-CCeEeecccchHHHHHHHhcCCeEEEECCCCCHHHHHHHHhCCCCe
Confidence            33444556788999997765  56677776663 359999999999998888642211      11        123568


Q ss_pred             eEEEeCccccCCCCHHHHHHHHHHcccCCcEEEEEEec
Q 019861          233 DAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTTYI  270 (334)
Q Consensus       233 D~V~~~~vl~h~~d~~~~L~~i~r~LkpgG~lii~~~~  270 (334)
                      |+|+..-.-+       .+....+.|+++|++++....
T Consensus        99 d~v~d~~g~~-------~~~~~~~~l~~~G~~v~~g~~  129 (179)
T d1qora2          99 RVVYDSVGRD-------TWERSLDCLQRRGLMVSFGNS  129 (179)
T ss_dssp             EEEEECSCGG-------GHHHHHHTEEEEEEEEECCCT
T ss_pred             EEEEeCccHH-------HHHHHHHHHhcCCeeeecccc
Confidence            8887654322       367889999999988775443

>d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative enoyl reductase domain of polyketide synthase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=92.07  E-value=0.1  Score=40.52  Aligned_cols=91  Identities=16%  Similarity=0.133  Sum_probs=60.8

Q ss_pred             HHcccCCCCCCcEEEECC--CcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcC------CC--------CCCCCc
Q 019861          169 MKGYLKPVLGGNIIDASC--GSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQE------SN--------FPKDSI  232 (334)
Q Consensus       169 l~~~l~~~~~~~vLDiGc--G~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~------~~--------~~~~~f  232 (334)
                      +.+.....++.+||=.|.  |.|.++..+++.. ..++++++-+++-.+.+++.-...      ..        .....+
T Consensus        17 l~~~~~~~~g~~VlI~ga~g~vG~~~iqla~~~-g~~vi~~~~~~~~~~~l~~~Ga~~vi~~~~~~~~~~v~~~t~~~g~   95 (183)
T d1pqwa_          17 LCEVGRLSPGERVLIHSATGGVGMAAVSIAKMI-GARIYTTAGSDAKREMLSRLGVEYVGDSRSVDFADEILELTDGYGV   95 (183)
T ss_dssp             HHTTSCCCTTCEEEETTTTSHHHHHHHHHHHHH-TCEEEEEESSHHHHHHHHTTCCSEEEETTCSTHHHHHHHHTTTCCE
T ss_pred             HHHHhCCCCCCEEEEECCCCCcccccchhhccc-cccceeeecccccccccccccccccccCCccCHHHHHHHHhCCCCE
Confidence            334455667889998874  3466677776653 348888888888777777531111      00        123569


Q ss_pred             eEEEeCccccCCCCHHHHHHHHHHcccCCcEEEEE
Q 019861          233 DAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGT  267 (334)
Q Consensus       233 D~V~~~~vl~h~~d~~~~L~~i~r~LkpgG~lii~  267 (334)
                      |+|+..-.     .  ..++.+.++|+++|+++..
T Consensus        96 d~v~d~~g-----~--~~~~~~~~~l~~~G~~v~~  123 (183)
T d1pqwa_          96 DVVLNSLA-----G--EAIQRGVQILAPGGRFIEL  123 (183)
T ss_dssp             EEEEECCC-----T--HHHHHHHHTEEEEEEEEEC
T ss_pred             EEEEeccc-----c--hHHHHHHHHhcCCCEEEEE
Confidence            99997543     2  3578889999999998885

>d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

Probab=91.91  E-value=0.31  Score=37.27  Aligned_cols=94  Identities=14%  Similarity=0.077  Sum_probs=56.5

Q ss_pred             HcccCCCCCCcEEEECCCcCHH-HHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcC-------CC--------CCCCCce
Q 019861          170 KGYLKPVLGGNIIDASCGSGLF-SRIFAKSGLFSLVVALDYSENMLKQCYEFVQQE-------SN--------FPKDSID  233 (334)
Q Consensus       170 ~~~l~~~~~~~vLDiGcG~G~~-~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~-------~~--------~~~~~fD  233 (334)
                      .+..+..++.+||=+|+|.+.. ...++.......|+++|.+++-++.+++.-...       ..        ...+.+|
T Consensus        21 ~~~a~~k~g~~VlI~G~Gg~g~~~~~~~~~~g~~~Vi~~~~~~~rl~~a~~~GAd~~in~~~~~~~~~~~~~~~~~~G~d  100 (175)
T d1cdoa2          21 VNTAKVEPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKVFGATDFVNPNDHSEPISQVLSKMTNGGVD  100 (175)
T ss_dssp             HTTTCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCCEEECGGGCSSCHHHHHHHHHTSCBS
T ss_pred             HHhhCCCCCCEEEEEecCCccchHHHHHHHHhhchheeecchHHHHHHHHHcCCcEEEcCCCcchhHHHHHHhhccCCcc
Confidence            3445567789999999998544 333444433458999999999999888742111       00        0124578


Q ss_pred             EEEeCccccCCCCHHHHHHHHHHcccCC-cEEEEEEe
Q 019861          234 AVHAGAAIHCWSSPSTGVAEISRVLRPG-GVFVGTTY  269 (334)
Q Consensus       234 ~V~~~~vl~h~~d~~~~L~~i~r~Lkpg-G~lii~~~  269 (334)
                      +|+-.-     ... ..+......+++| |.+++...
T Consensus       101 ~vid~~-----G~~-~~~~~a~~~~~~g~~~~~~~g~  131 (175)
T d1cdoa2         101 FSLECV-----GNV-GVMRNALESCLKGWGVSVLVGW  131 (175)
T ss_dssp             EEEECS-----CCH-HHHHHHHHTBCTTTCEEEECSC
T ss_pred             eeeeec-----CCH-HHHHHHHHHhhCCCcceeEEEe
Confidence            886443     333 3456666666665 55544333

>d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=91.80  E-value=0.34  Score=37.01  Aligned_cols=93  Identities=14%  Similarity=0.050  Sum_probs=60.8

Q ss_pred             HcccCCCCCCcEEEECCCc-CHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcC--------CC-------CCCCCce
Q 019861          170 KGYLKPVLGGNIIDASCGS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQE--------SN-------FPKDSID  233 (334)
Q Consensus       170 ~~~l~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~--------~~-------~~~~~fD  233 (334)
                      .+..+..++.+||=+|+|. |.++..+++......|+++|.++.-++.+++.-...        ..       ...+.+|
T Consensus        21 ~~~~~~~~G~tVlI~GaGGvG~~aiq~ak~~G~~~vi~~~~~~~k~~~ak~lGa~~~i~~~~~~~~~~~~~~~~~~~g~D  100 (176)
T d2fzwa2          21 VNTAKLEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEFGATECINPQDFSKPIQEVLIEMTDGGVD  100 (176)
T ss_dssp             HTTTCCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHHTCSEEECGGGCSSCHHHHHHHHTTSCBS
T ss_pred             HHhhCCCCCCEEEEecchhHHHHHHHHHHHHhcCceEEEcccHHHHHHHHHhCCcEEEeCCchhhHHHHHHHHHcCCCCc
Confidence            3445567799999999984 344555555432358999999999988888642111        00       1134688


Q ss_pred             EEEeCccccCCCCHHHHHHHHHHcccCCcEEEEEE
Q 019861          234 AVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTT  268 (334)
Q Consensus       234 ~V~~~~vl~h~~d~~~~L~~i~r~LkpgG~lii~~  268 (334)
                      +|+-.-.      ....++.....+++||.+++..
T Consensus       101 ~vid~~G------~~~~~~~~~~~~~~g~~~~~v~  129 (176)
T d2fzwa2         101 YSFECIG------NVKVMRAALEACHKGWGVSVVV  129 (176)
T ss_dssp             EEEECSC------CHHHHHHHHHTBCTTTCEEEEC
T ss_pred             EeeecCC------CHHHHHHHHHhhcCCceeEEEE
Confidence            8886532      2346788899999987766543

>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

Probab=91.48  E-value=0.28  Score=37.16  Aligned_cols=82  Identities=9%  Similarity=0.112  Sum_probs=54.4

Q ss_pred             cEEEECCCc--CHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcC---CCC-CCCCceEEEeCccccCCCCHHHHHHH
Q 019861          180 NIIDASCGS--GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQE---SNF-PKDSIDAVHAGAAIHCWSSPSTGVAE  253 (334)
Q Consensus       180 ~vLDiGcG~--G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~---~~~-~~~~fD~V~~~~vl~h~~d~~~~L~~  253 (334)
                      +|.=||+|.  +.++..|.+++.  +|+++|.+++.++.+++.-...   ... .-...|+|+..--.   ..-..++++
T Consensus         2 kI~iIG~G~mG~~lA~~l~~~g~--~V~~~d~~~~~~~~a~~~~~~~~~~~~~~~~~~~DiIilavp~---~~~~~vl~~   76 (165)
T d2f1ka2           2 KIGVVGLGLIGASLAGDLRRRGH--YLIGVSRQQSTCEKAVERQLVDEAGQDLSLLQTAKIIFLCTPI---QLILPTLEK   76 (165)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTC--EEEEECSCHHHHHHHHHTTSCSEEESCGGGGTTCSEEEECSCH---HHHHHHHHH
T ss_pred             EEEEEeecHHHHHHHHHHHHCCC--EEEEEECCchHHHHHHHhhccceeeeecccccccccccccCcH---hhhhhhhhh
Confidence            577788884  456777888887  9999999999888877642111   111 12467888864311   123467888


Q ss_pred             HHHcccCCcEEEE
Q 019861          254 ISRVLRPGGVFVG  266 (334)
Q Consensus       254 i~r~LkpgG~lii  266 (334)
                      +...|+++-.++-
T Consensus        77 l~~~l~~~~iv~~   89 (165)
T d2f1ka2          77 LIPHLSPTAIVTD   89 (165)
T ss_dssp             HGGGSCTTCEEEE
T ss_pred             hhhhcccccceee
Confidence            8888888775543

>d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase
species: Guinea pig (Cavia porcellus) [TaxId: 10141]

Probab=90.51  E-value=0.3  Score=37.71  Aligned_cols=93  Identities=12%  Similarity=0.000  Sum_probs=63.9

Q ss_pred             HHHcccCCCCCCcEEEECCCc--CHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcC------CC--------CCCCC
Q 019861          168 LMKGYLKPVLGGNIIDASCGS--GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQE------SN--------FPKDS  231 (334)
Q Consensus       168 ~l~~~l~~~~~~~vLDiGcG~--G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~------~~--------~~~~~  231 (334)
                      .+.+..+..++.+||=.|++.  |..+..+++.. .+++++++-+++..+.+++.-...      ..        ...+.
T Consensus        20 al~~~~~v~~G~~VlV~ga~ggvG~~aiqlak~~-Ga~vi~~~~~~~~~~~~~~~Ga~~vi~~~~~~~~~~~~~~~~~~G   98 (182)
T d1v3va2          20 GLLEVCGVKGGETVLVSAAAGAVGSVVGQIAKLK-GCKVVGAAGSDEKIAYLKQIGFDAAFNYKTVNSLEEALKKASPDG   98 (182)
T ss_dssp             HHHTTTCCCSSCEEEESSTTSHHHHHHHHHHHHT-TCEEEEEESSHHHHHHHHHTTCSEEEETTSCSCHHHHHHHHCTTC
T ss_pred             HHHHHhCCCCCCEEEEEeCCCchhHHHHHHHHcc-CCEEEEeCCCHHHHHHHHhhhhhhhcccccccHHHHHHHHhhcCC
Confidence            344555667789999888865  45666677664 359999999988888877642211      00        12345


Q ss_pred             ceEEEeCccccCCCCHHHHHHHHHHcccCCcEEEEEE
Q 019861          232 IDAVHAGAAIHCWSSPSTGVAEISRVLRPGGVFVGTT  268 (334)
Q Consensus       232 fD~V~~~~vl~h~~d~~~~L~~i~r~LkpgG~lii~~  268 (334)
                      +|+|+-.-     .  ...+++..+.|+++|.++..-
T Consensus        99 vd~v~D~v-----G--~~~~~~~~~~l~~~G~~v~~G  128 (182)
T d1v3va2          99 YDCYFDNV-----G--GEFLNTVLSQMKDFGKIAICG  128 (182)
T ss_dssp             EEEEEESS-----C--HHHHHHHGGGEEEEEEEEECC
T ss_pred             CceeEEec-----C--chhhhhhhhhccCCCeEEeec
Confidence            88887543     2  246889999999999988753

>d1tfia_ g.41.3.1 (A:) Transcriptional factor SII, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Zinc beta-ribbon
family: Transcriptional factor domain
domain: Transcriptional factor SII, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.09  E-value=0.038  Score=33.42  Aligned_cols=40  Identities=18%  Similarity=0.389  Sum_probs=24.5

Q ss_pred             CCceeCCCCCCCcccc-CCCCcccccccCCccccccccccc
Q 019861           69 KNVLACPICYKPLTWI-GDSSLSIESAAGSSLQCNTCKKTY  108 (334)
Q Consensus        69 ~~~l~CPiC~~~l~~~-~~~~~~~~~~~~~~~~C~~C~~~~  108 (334)
                      ...+.||-|++..... ..+.-+.++....++.|.+||+.+
T Consensus         7 T~~~~C~kC~~~~~~~~~~QtRSADEp~T~F~~C~~Cg~~W   47 (50)
T d1tfia_           7 TDLFTCGKCKKKNCTYTQVQTRSADEPMTTFVVCNECGNRW   47 (50)
T ss_dssp             CCCSCCSSSCSSCEEEEEECSSSSSSCCEEEEEESSSCCEE
T ss_pred             cCCEECCCCCCCccEEEEEEccCCCCCceEEEEccccCCee
Confidence            4678999999965321 111112222244579999999865

>d2jnea1 g.41.18.1 (A:1-71) Hypothetical protein YfgJ {Escherichia coli [TaxId: 562]}

class: Small proteins
fold: Rubredoxin-like
superfamily: YfgJ-like
family: YfgJ-like
domain: Hypothetical protein YfgJ
species: Escherichia coli [TaxId: 562]

Probab=89.90  E-value=0.055  Score=34.83  Aligned_cols=29  Identities=24%  Similarity=0.509  Sum_probs=20.5

Q ss_pred             ceeCCCCCCCccccCCCCcccccccCCccccccccccccc
Q 019861           71 VLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSG  110 (334)
Q Consensus        71 ~l~CPiC~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~~~  110 (334)
                      .+.||.|+.+|.+..           +...|..|+.-|..
T Consensus         2 ~~~CP~C~~eL~~~~-----------~~~~C~~C~~~~~~   30 (71)
T d2jnea1           2 ELHCPQCQHVLDQDN-----------GHARCRSCGEFIEM   30 (71)
T ss_dssp             CCBCSSSCSBEEEET-----------TEEEETTTCCEEEE
T ss_pred             CCcCCCccCcccccC-----------CCEehhhhhhhhee
Confidence            478999999998854           45666666655543

>d1pfva3 g.41.1.1 (A:141-175) Methionyl-tRNA synthetase (MetRS), Zn-domain {Escherichia coli [TaxId: 562]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Methionyl-tRNA synthetase (MetRS), Zn-domain
family: Methionyl-tRNA synthetase (MetRS), Zn-domain
domain: Methionyl-tRNA synthetase (MetRS), Zn-domain
species: Escherichia coli [TaxId: 562]

Probab=89.50  E-value=0.1  Score=28.81  Aligned_cols=25  Identities=36%  Similarity=0.869  Sum_probs=18.7

Q ss_pred             eCCCCCCCccccCCCCcccccccCCcccccccccccccc
Q 019861           73 ACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSGV  111 (334)
Q Consensus        73 ~CPiC~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~~~~  111 (334)
                      .||.|+.....              --+|..||..|...
T Consensus         4 ~CP~C~~~~a~--------------GDqCe~CG~~~~p~   28 (35)
T d1pfva3           4 TCPKCKSPDQY--------------GDNCEVCGATYSPT   28 (35)
T ss_dssp             ECTTTCCSSEE--------------TTBCTTTCCBCCGG
T ss_pred             ECCCCCCcccc--------------cccHHHcCCcCCHH
Confidence            59999996443              35899999988543

>d1qypa_ g.41.3.1 (A:) RBP9 subunit of RNA polymerase II {Archaeon Thermococcus celer [TaxId: 2264]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Zinc beta-ribbon
family: Transcriptional factor domain
domain: RBP9 subunit of RNA polymerase II
species: Archaeon Thermococcus celer [TaxId: 2264]

Probab=89.35  E-value=0.048  Score=34.02  Aligned_cols=39  Identities=15%  Similarity=0.448  Sum_probs=23.6

Q ss_pred             ceeCCCCCCCccccCC-CCcccccccCCcccccccccccc
Q 019861           71 VLACPICYKPLTWIGD-SSLSIESAAGSSLQCNTCKKTYS  109 (334)
Q Consensus        71 ~l~CPiC~~~l~~~~~-~~~~~~~~~~~~~~C~~C~~~~~  109 (334)
                      .+.||.|++....... +.-+.+....-++.|.+|++.+.
T Consensus        15 ~~~CpkC~~~~a~~~~~QtRsaDE~~T~fy~C~~Cg~~wr   54 (57)
T d1qypa_          15 KITCPKCGNDTAYWWEMQTRAGDEPSTIFYKCTKCGHTWR   54 (57)
T ss_dssp             ECCCTTTCCSEEEEEEECCSSSSCSSEEEEEESSSCCEEE
T ss_pred             cCCCCCCCCCceEEEEeecccccCCCeEEEEeCCCCCcce
Confidence            4689999996533221 11111222445799999998774

>d1rqga3 g.41.1.1 (A:139-173) Methionyl-tRNA synthetase (MetRS), Zn-domain {Pyrococcus abyssi [TaxId: 29292]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Methionyl-tRNA synthetase (MetRS), Zn-domain
family: Methionyl-tRNA synthetase (MetRS), Zn-domain
domain: Methionyl-tRNA synthetase (MetRS), Zn-domain
species: Pyrococcus abyssi [TaxId: 29292]

Probab=89.22  E-value=0.12  Score=28.55  Aligned_cols=25  Identities=24%  Similarity=0.545  Sum_probs=18.6

Q ss_pred             eCCCCCCCccccCCCCcccccccCCcccccccccccccc
Q 019861           73 ACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSGV  111 (334)
Q Consensus        73 ~CPiC~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~~~~  111 (334)
                      .||.|+.....              --+|..||..|...
T Consensus         4 ~CP~C~~~~a~--------------GDqCe~CG~~~~p~   28 (35)
T d1rqga3           4 TCPYCGAEDQK--------------GDQCEVCGRPLTPE   28 (35)
T ss_dssp             BCSSSCCSCCC--------------TTTCSSSCCCCCTT
T ss_pred             ECCCCCCCccc--------------CcchhhcCCccCHH
Confidence            59999986432              35899999988554

>d1jj2y_ g.41.8.1 (Y:) Ribosomal protein L37ae {Archaeon Haloarcula marismortui [TaxId: 2238]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Zn-binding ribosomal proteins
family: Ribosomal protein L37ae
domain: Ribosomal protein L37ae
species: Archaeon Haloarcula marismortui [TaxId: 2238]

Probab=88.86  E-value=0.07  Score=34.77  Aligned_cols=32  Identities=19%  Similarity=0.388  Sum_probs=22.8

Q ss_pred             CceeCCCCCCCccccCCCCcccccccCCccccccccccccc
Q 019861           70 NVLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSG  110 (334)
Q Consensus        70 ~~l~CPiC~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~~~  110 (334)
                      ....||.|+..-....         ..++|.|..|+..+..
T Consensus        26 ~ky~Cp~Cgk~~vkR~---------a~GIW~C~kC~~~~AG   57 (73)
T d1jj2y_          26 KKHKCPVCGFKKLKRA---------GTGIWMCGHCGYKIAG   57 (73)
T ss_dssp             SCBCCSSSCCSCEEEE---------ETTEEEETTTCCEEEC
T ss_pred             CCccCCCCCCCceEEE---------EEEEEECCCCCCEEeC
Confidence            4578999997532221         3379999999987744

>d1zkda1 c.66.1.52 (A:2-366) Hypothetical protein RPA4359 {Rhodopseudomonas palustris [TaxId: 1076]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: RPA4359-like
domain: Hypothetical protein RPA4359
species: Rhodopseudomonas palustris [TaxId: 1076]

Probab=88.76  E-value=0.72  Score=39.91  Aligned_cols=51  Identities=8%  Similarity=-0.029  Sum_probs=36.8

Q ss_pred             cCCCCCCcEEEECCCcCHHHHHHHHcC-------CCCeEEEEeCCHHHHHHHHHHHhc
Q 019861          173 LKPVLGGNIIDASCGSGLFSRIFAKSG-------LFSLVVALDYSENMLKQCYEFVQQ  223 (334)
Q Consensus       173 l~~~~~~~vLDiGcG~G~~~~~l~~~~-------~~~~v~giD~s~~~~~~a~~~~~~  223 (334)
                      +.......|+|+|+|+|.++..+....       ....++-+|+|+...+.-++.+..
T Consensus        75 ~~~~~~~~ivE~GaG~G~La~dil~~l~~~~~~~~~~~~~~vE~s~~L~~~Q~~~l~~  132 (365)
T d1zkda1          75 ADEPQTLRLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEINPVLRQKQQTLLAG  132 (365)
T ss_dssp             TTCCSSEEEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEEECCCHHHHHHHHHHSTT
T ss_pred             hCCCccceEEecCCcccHHHHhhhhhhcccccccccceEEEeccchhHHHHHHHHhcc
Confidence            333344689999999999987765531       234689999999987777766554

>d1vqoz1 g.41.8.1 (Z:10-82) Ribosomal protein L37ae {Archaeon Haloarcula marismortui [TaxId: 2238]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Zn-binding ribosomal proteins
family: Ribosomal protein L37ae
domain: Ribosomal protein L37ae
species: Archaeon Haloarcula marismortui [TaxId: 2238]

Probab=88.64  E-value=0.074  Score=34.63  Aligned_cols=32  Identities=25%  Similarity=0.477  Sum_probs=23.3

Q ss_pred             CceeCCCCCCCccccCCCCcccccccCCccccccccccccc
Q 019861           70 NVLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSG  110 (334)
Q Consensus        70 ~~l~CPiC~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~~~  110 (334)
                      ....||.|+..-....         ..++|.|..|+..+..
T Consensus        26 ~ky~Cp~Cgk~~vkR~---------a~GIW~C~kC~~~~AG   57 (73)
T d1vqoz1          26 EDHACPNCGEDRVDRQ---------GTGIWQCSYCDYKFTG   57 (73)
T ss_dssp             SCBCCSSSSCSCEEEE---------ETTEEEETTTCCEEEC
T ss_pred             CCccCCCCCCceeEEE---------EEEEEECCCCCCEEeC
Confidence            4578999999633222         3479999999987744

>d1pfta_ g.41.3.1 (A:) Transcription initiation factor TFIIB, N-terminal domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Zinc beta-ribbon
family: Transcriptional factor domain
domain: Transcription initiation factor TFIIB, N-terminal domain
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=88.57  E-value=0.087  Score=31.83  Aligned_cols=30  Identities=17%  Similarity=0.419  Sum_probs=21.1

Q ss_pred             ceeCCCCCCCccccCCCCcccccccCCccccccccccc
Q 019861           71 VLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTY  108 (334)
Q Consensus        71 ~l~CPiC~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~  108 (334)
                      ...||.|++......        ...+...|.+||.+.
T Consensus         5 ~~~Cp~Cgs~~iv~D--------~~~Ge~vC~~CG~Vi   34 (50)
T d1pfta_           5 QKVCPACESAELIYD--------PERGEIVCAKCGYVI   34 (50)
T ss_dssp             CCSCTTTSCCCEEEE--------TTTTEEEESSSCCBC
T ss_pred             cccCcCCCCCcEEEE--------CCCCeEecccCCcEe
Confidence            357999998643322        133689999999865

>d2py6a1 c.66.1.56 (A:14-408) Methyltransferase FkbM {Methylobacillus flagellatus [TaxId: 405]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: FkbM-like
domain: Methyltransferase FkbM
species: Methylobacillus flagellatus [TaxId: 405]

Probab=86.81  E-value=0.74  Score=40.35  Aligned_cols=49  Identities=12%  Similarity=0.084  Sum_probs=39.1

Q ss_pred             CCCCCCcEEEECCCcCHHHHHHHHc--CCCCeEEEEeCCHHHHHHHHHHHh
Q 019861          174 KPVLGGNIIDASCGSGLFSRIFAKS--GLFSLVVALDYSENMLKQCYEFVQ  222 (334)
Q Consensus       174 ~~~~~~~vLDiGcG~G~~~~~l~~~--~~~~~v~giD~s~~~~~~a~~~~~  222 (334)
                      ...++..++|||+-.|.++..++..  +...+|+++|+++...+..++++.
T Consensus       209 ~l~kn~vfIDVGAniG~~s~~f~~~~~~~~~kV~aFEP~p~n~~~LkkNi~  259 (395)
T d2py6a1         209 RFSDSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINLQTLQNVLR  259 (395)
T ss_dssp             CCCSSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHHHHHHHHHHHH
T ss_pred             CcCCCCEEEECCcCCCHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHHHH
Confidence            3456789999999999988776654  223589999999999998887754

>d1twfi2 g.41.3.1 (I:50-121) RBP9 subunit of RNA polymerase II {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Zinc beta-ribbon
family: Transcriptional factor domain
domain: RBP9 subunit of RNA polymerase II
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=86.50  E-value=0.27  Score=31.96  Aligned_cols=41  Identities=12%  Similarity=0.248  Sum_probs=25.1

Q ss_pred             ceeCCCCCCCccccC-CCCcccccccCCcccccccccccccc
Q 019861           71 VLACPICYKPLTWIG-DSSLSIESAAGSSLQCNTCKKTYSGV  111 (334)
Q Consensus        71 ~l~CPiC~~~l~~~~-~~~~~~~~~~~~~~~C~~C~~~~~~~  111 (334)
                      ...||-|++...... .+.-+.+....-++.|.+|++.|...
T Consensus        23 ~~~CpkCg~~~a~~~q~QtRsaDE~mT~Fy~C~~C~h~Wr~~   64 (72)
T d1twfi2          23 DRECPKCHSRENVFFQSQQRRKDTSMVLFFVCLSCSHIFTSD   64 (72)
T ss_dssp             CCCCTTTCCCCEEEEECSSCCTTCCCCEEEEETTTCCEEECC
T ss_pred             CCCCCCCCCCeEEEEEeecCccCCCceEEEEcCCCCCCcccc
Confidence            368999999643221 11111222244579999999988664

>d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Thermus thermophilus [TaxId: 274]

Probab=85.16  E-value=0.37  Score=36.85  Aligned_cols=86  Identities=19%  Similarity=0.125  Sum_probs=57.1

Q ss_pred             cCCCCCCcEEEECC-Cc-CHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCC-C--------CCCCCceEEEeCccc
Q 019861          173 LKPVLGGNIIDASC-GS-GLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES-N--------FPKDSIDAVHAGAAI  241 (334)
Q Consensus       173 l~~~~~~~vLDiGc-G~-G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~-~--------~~~~~fD~V~~~~vl  241 (334)
                      .+..++.+||=.|. |. |.+...+++.. ..++++++-++...+.+++.-.... .        -..+.+|+|+-..  
T Consensus        23 ~~~~~g~~VlI~ga~G~vG~~aiqlak~~-G~~vi~~~~~~~~~~~~~~lGa~~~i~~~~~~~~~~~~~g~D~v~d~~--   99 (171)
T d1iz0a2          23 AQARPGEKVLVQAAAGALGTAAVQVARAM-GLRVLAAASRPEKLALPLALGAEEAATYAEVPERAKAWGGLDLVLEVR--   99 (171)
T ss_dssp             TTCCTTCEEEESSTTBHHHHHHHHHHHHT-TCEEEEEESSGGGSHHHHHTTCSEEEEGGGHHHHHHHTTSEEEEEECS--
T ss_pred             hCCCCCCEEEEEeccccchhhhhhhhccc-ccccccccccccccccccccccceeeehhhhhhhhhcccccccccccc--
Confidence            45567889999885 33 56677777664 3599999998887777775311100 0        0124589888632  


Q ss_pred             cCCCCHHHHHHHHHHcccCCcEEEEE
Q 019861          242 HCWSSPSTGVAEISRVLRPGGVFVGT  267 (334)
Q Consensus       242 ~h~~d~~~~L~~i~r~LkpgG~lii~  267 (334)
                         .+   .+....+.|+|+|+++..
T Consensus       100 ---G~---~~~~~~~~l~~~G~~v~~  119 (171)
T d1iz0a2         100 ---GK---EVEESLGLLAHGGRLVYI  119 (171)
T ss_dssp             ---CT---THHHHHTTEEEEEEEEEC
T ss_pred             ---ch---hHHHHHHHHhcCCcEEEE
Confidence               22   257788999999998874

>d1vj1a2 c.2.1.1 (A:125-311) Putative zinc-binding alcohol dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative zinc-binding alcohol dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=83.61  E-value=1.8  Score=33.16  Aligned_cols=83  Identities=6%  Similarity=-0.039  Sum_probs=54.6

Q ss_pred             CCcEEEEC--CCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCC--------------CCCCCCceEEEeCccc
Q 019861          178 GGNIIDAS--CGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES--------------NFPKDSIDAVHAGAAI  241 (334)
Q Consensus       178 ~~~vLDiG--cG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~--------------~~~~~~fD~V~~~~vl  241 (334)
                      +.+||=.|  .|.|.++.++++......+++++-+++......+.+..+.              ....+.+|+|+-.-  
T Consensus        31 ~etVLI~gaaGgVG~~aiQlak~~Ga~~vi~~~~~~e~~~~l~~~~gad~vi~~~~~~~~~~~~~~~~~GvDvv~D~v--  108 (187)
T d1vj1a2          31 NQTMVVSGAAGACGSLAGQIGHLLGCSRVVGICGTQEKCLFLTSELGFDAAVNYKTGNVAEQLREACPGGVDVYFDNV--  108 (187)
T ss_dssp             CCEEEESSTTSTTGGGHHHHHHHTTCSEEEEEESSHHHHHHHHHHSCCSEEEETTSSCHHHHHHHHCTTCEEEEEESS--
T ss_pred             CCEEEEECCCchhhHHHHHHHHHcCCcceecccchHHHHhhhhhcccceEEeeccchhHHHHHHHHhccCceEEEecC--
Confidence            36788877  4568899999887533367777777766555544332211              01134589987443  


Q ss_pred             cCCCCHHHHHHHHHHcccCCcEEEEE
Q 019861          242 HCWSSPSTGVAEISRVLRPGGVFVGT  267 (334)
Q Consensus       242 ~h~~d~~~~L~~i~r~LkpgG~lii~  267 (334)
                         .  ...+....+.|+++|+++..
T Consensus       109 ---G--g~~~~~~~~~l~~~G~iv~~  129 (187)
T d1vj1a2         109 ---G--GDISNTVISQMNENSHIILC  129 (187)
T ss_dssp             ---C--HHHHHHHHTTEEEEEEEEEC
T ss_pred             ---C--chhHHHHhhhccccccEEEe
Confidence               2  24588999999999999874

>d1tt7a2 c.2.1.1 (A:128-294) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhfP
species: Bacillus subtilis [TaxId: 1423]

Probab=81.64  E-value=1  Score=34.26  Aligned_cols=87  Identities=13%  Similarity=0.062  Sum_probs=58.3

Q ss_pred             CCCcEEEECC--CcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcC------------CCCCCCCceEEEeCcccc
Q 019861          177 LGGNIIDASC--GSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQE------------SNFPKDSIDAVHAGAAIH  242 (334)
Q Consensus       177 ~~~~vLDiGc--G~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~------------~~~~~~~fD~V~~~~vl~  242 (334)
                      ++.+||=-|.  |-|.++.++++.. .++|+++.-+++-.+.+++.-...            .....+.+|+|+-.    
T Consensus        23 ~~~~VLV~gaaGgVG~~avQlAk~~-Ga~Viat~~s~~k~~~~~~lGad~vi~~~~~~~~~~~~~~~~gvd~vid~----   97 (167)
T d1tt7a2          23 EKGSVLVTGATGGVGGIAVSMLNKR-GYDVVASTGNREAADYLKQLGASEVISREDVYDGTLKALSKQQWQGAVDP----   97 (167)
T ss_dssp             GGCCEEEESTTSHHHHHHHHHHHHH-TCCEEEEESSSSTHHHHHHHTCSEEEEHHHHCSSCCCSSCCCCEEEEEES----
T ss_pred             CCCEEEEeCCcchHHHHHHHHHHHc-CCceEEEecCHHHHHHHHhhcccceEeccchhchhhhcccCCCceEEEec----
Confidence            4557887774  3467777777773 359999998888777777542111            12234678887644    


Q ss_pred             CCCCHHHHHHHHHHcccCCcEEEEEEecc
Q 019861          243 CWSSPSTGVAEISRVLRPGGVFVGTTYIV  271 (334)
Q Consensus       243 h~~d~~~~L~~i~r~LkpgG~lii~~~~~  271 (334)
                       +..  ..+.+..+.|+++|+++..-...
T Consensus        98 -vgg--~~~~~~~~~l~~~G~iv~~G~~~  123 (167)
T d1tt7a2          98 -VGG--KQLASLLSKIQYGGSVAVSGLTG  123 (167)
T ss_dssp             -CCT--HHHHHHHTTEEEEEEEEECCCSS
T ss_pred             -CcH--HHHHHHHHHhccCceEEEeeccC
Confidence             322  35889999999999998865443

>d2c7pa1 c.66.1.26 (A:1-327) DNA methylase HhaI {Haemophilus haemolyticus [TaxId: 726]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: C5 cytosine-specific DNA methylase, DCM
domain: DNA methylase HhaI
species: Haemophilus haemolyticus [TaxId: 726]

Probab=81.56  E-value=1.9  Score=36.05  Aligned_cols=62  Identities=18%  Similarity=0.172  Sum_probs=47.5

Q ss_pred             CCCCcEEEECCCcCHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHHhcCC--------CCCCCCceEEEeC
Q 019861          176 VLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEFVQQES--------NFPKDSIDAVHAG  238 (334)
Q Consensus       176 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~giD~s~~~~~~a~~~~~~~~--------~~~~~~fD~V~~~  238 (334)
                      ..+.+|||+=||.|.+...|...|. ..+.++|+++.+++..+.++....        ...-..+|+++..
T Consensus         9 ~~~lrv~~lFsG~Gg~~~gl~~aG~-~~v~a~e~d~~a~~~~~~N~~~~~~~Di~~~~~~~~~~~Dll~gg   78 (327)
T d2c7pa1           9 LTGLRFIDLFAGLGGFRLALESCGA-ECVYSNEWDKYAQEVYEMNFGEKPEGDITQVNEKTIPDHDILCAG   78 (327)
T ss_dssp             TTTCEEEEETCTTTHHHHHHHHTTC-EEEEEECCCHHHHHHHHHHHSCCCBSCGGGSCGGGSCCCSEEEEE
T ss_pred             CCCCeEEEECccccHHHHHHHHCCC-eEEEEEeCCHHHHHHHHHHCCCCCcCchhcCchhhcceeeeeecc
Confidence            3568999999999999999999985 356779999999998888875322        1112368999874

>d1wiia_ g.41.3.4 (A:) Hypothetical UPF0222 protein MGC4549 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Zinc beta-ribbon
family: Putative zinc binding domain
domain: Hypothetical UPF0222 protein MGC4549
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=81.34  E-value=0.42  Score=31.98  Aligned_cols=39  Identities=13%  Similarity=0.388  Sum_probs=24.8

Q ss_pred             CceeCCCCCCCccccCCCCcccccccCCcccccccccccccc
Q 019861           70 NVLACPICYKPLTWIGDSSLSIESAAGSSLQCNTCKKTYSGV  111 (334)
Q Consensus        70 ~~l~CPiC~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~~~~~  111 (334)
                      ..|.||.|+........   -........+.|..|+..|...
T Consensus        22 t~F~CPfCnh~~sV~vk---~dkk~~~g~l~C~vCg~~~~~~   60 (85)
T d1wiia_          22 TQFTCPFCNHEKSCDVK---MDRARNTGVISCTVCLEEFQTP   60 (85)
T ss_dssp             SCCCCTTTCCSSCEEEE---EETTTTEEEEEESSSCCEEEEE
T ss_pred             ceEcCCCCCCCCeEEEE---EEecCCEEEEEEecCCCeEEec
Confidence            35899999975433221   0112244689999999877554