Citrus Sinensis ID: 019862

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330----
MASSVISPAPTSSFINNKKDLGSFCFSSTSQFSVNKCKKLAVSKKIVSVMAPQQSERRPATTGSVKNAMTLTEKIFSRASEKPQLSPGDNVWVNVDILMTHDVCGPGSFGIFKKEFGENAKVWDREKIVIIPDHYIFTSDERANRNVDILRDFCMEQNIKYFYDIKDLGNFKANPDYKGVCHIALAQEGHCRPGEVLLGTDSHTCTAGAFGQFATGIGNTDAGFVLGTGKVLLKVPPTLRFVLDGEMPDYLLAKDLILQIIGEISVAGATYKSMEFVGTTVERLSMEERMTLCNMVVEAGGKNGVVPADGTTFKYLEDKTSLPYEPVYSDEKAR
cccccccccccccccccccccccccccccccccccHHHHHHccccEEEEcccccccccccccccccccccHHHHHHHHHccccccccccEEEEEEEEEEEcccccHHHHHHHHHHccccccccccccEEEccccccccccHHHHHHHHHHHHHHHHcccccEEEcccccccccccccccEEEEEEccccccccccEEEcccccHHHHHHHHHHHccccHHHHHHHHHHcccccccccEEEEEEEEEccccccHHHHHHHHHHHHccccccEEEEEEEccccccccccccHHHHHHHHHHccccccccccHHHHHHHHccccccccccccccccc
cccccccccccEEEEEcccEEEEEcccHHHHcccccccccccHHHHHHHHcccccccccccccccccccHHHHHHHHHcEEEccccccccEEEEEEcEEEEEcccHHHHHHHHHcccccccccccccEEEEEcccccccccccHHHHHHHHHHHHHccHHHHHHHccccEcccccccccEEEEEcccHHccccccEEEEccccHHHHHHHccEEEEccHHHHHHHHHcccEEEEccEEEEEEEEccccccccHHHHHHHHHHHHHHHHcccEEEEEEcHHHHHccHHHHHHHHHHHHHHcccEEEccccHHHHHHHcccccccHHHcccccccc
massvispaptssfinnkkdlgsfcfsstsqfsvnkcKKLAVSKKIVSVmapqqserrpattgsvkNAMTLTEKIFSrasekpqlspgdnvWVNVDILMthdvcgpgsfgifkkefgenakvwdrekiviipdhyiftsderanRNVDILRDFCMEQNIKYFYDIKdlgnfkanpdykgvCHIALaqeghcrpgevllgtdshtctagafgqfatgigntdagfvlgtgkvllkvpptlrfvldgempdyLLAKDLILQIIGEISVAGATYKSMEFVGTTVERLSMEERMTLCNMVVEaggkngvvpadgttfkyledktslpyepvysdekar
massvispaptssfinnkkDLGSFCFSSTSQFSVNKCKKLAVSKKIVsvmapqqserrpattgsvknAMTLTEKIFsrasekpqlspgDNVWVNVDILMTHDVCGPGSFGIFKKEFgenakvwdrekiviipdhyiftsderanRNVDILRDFCMEQNIKYFYDIKDLGNFKANPDYKGVCHIALAQEGHCRPGEVLLGTDSHTCTAGAFGQFATGIGNTDAGFVLGTGKVLLKVPPTLRFVLDGEMPDYLLAKDLILQIIGEISVAGATYKSMEFVGTTVERLSMEERMTLCNMVVEAGGKNGVVPADGTtfkyledktslpyepvysdekar
MASSVISPAPTSSFINNKKDLGSFCFSSTSQFSVNKCKKLAVSKKIVSVMAPQQSERRPATTGSVKNAMTLTEKIFSRASEKPQLSPGDNVWVNVDILMTHDVCGPGSFGIFKKEFGENAKVWDREKIVIIPDHYIFTSDERANRNVDILRDFCMEQNIKYFYDIKDLGNFKANPDYKGVCHIALAQEGHCRPGEVLLGTDSHTCTAGAFGQFATGIGNTDAGFVLGTGKVLLKVPPTLRFVLDGEMPDYLLAKDLILQIIGEISVAGATYKSMEFVGTTVERLSMEERMTLCNMVVEAGGKNGVVPADGTTFKYLEDKTSLPYEPVYSDEKAR
********************LGSFCFSSTSQFSVNKCKKLAVSKKIV*****************************************DNVWVNVDILMTHDVCGPGSFGIFKKEFGENAKVWDREKIVIIPDHYIFTSDERANRNVDILRDFCMEQNIKYFYDIKDLGNFKANPDYKGVCHIALAQEGHCRPGEVLLGTDSHTCTAGAFGQFATGIGNTDAGFVLGTGKVLLKVPPTLRFVLDGEMPDYLLAKDLILQIIGEISVAGATYKSMEFVGTTVERLSMEERMTLCNMVVEAGGKNGVVPADGTTFKYLED****************
*************FINNKKDLGSFCF********************************************LTEKIFSRASEKPQLSPGDNVWVNVDILMTHDVCGPGSFGIFKKEFGENAKVWDREKIVIIPDHYIFTSDERANRNVDILRDFCMEQNIKYFYDIKDLGNFKANPDYKGVCHIALAQEGHCRPGEVLLGTDSHTCTAGAFGQFATGIGNTDAGFVLGTGKVLLKVPPTLRFVLDGEMPDYLLAKDLILQIIGEISVAGATYKSMEFVGTTVERLSMEERMTLCNMVVEAGGKNGVVPADGTTFKYLEDKTSLPYEPVYS*E***
*********PTSSFINNKKDLGSFCFSSTSQFSVNKCKKLAVSKKIVSVM**************VKNAMTLTEKIFSRASEKPQLSPGDNVWVNVDILMTHDVCGPGSFGIFKKEFGENAKVWDREKIVIIPDHYIFTSDERANRNVDILRDFCMEQNIKYFYDIKDLGNFKANPDYKGVCHIALAQEGHCRPGEVLLGTDSHTCTAGAFGQFATGIGNTDAGFVLGTGKVLLKVPPTLRFVLDGEMPDYLLAKDLILQIIGEISVAGATYKSMEFVGTTVERLSMEERMTLCNMVVEAGGKNGVVPADGTTFKYLEDKTSLPYEPVYSDEKAR
*****ISPAPTSSFINNKKDLGSFCFSSTSQFSVNKCKKLAVSKKIVSVMAPQQSE*RPATTGSVKNAMTLTEKIFSRASEKPQLSPGDNVWVNVDILMTHDVCGPGSFGIFKKEFGENAKVWDREKIVIIPDHYIFTSDERANRNVDILRDFCMEQNIKYFYDIKDLGNFKANPDYKGVCHIALAQEGHCRPGEVLLGTDSHTCTAGAFGQFATGIGNTDAGFVLGTGKVLLKVPPTLRFVLDGEMPDYLLAKDLILQIIGEISVAGATYKSMEFVGTTVERLSMEERMTLCNMVVEAGGKNGVVPADGTTFKYLEDKTSLPYEPVYS*****
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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MASSVISPAPTSSFINNKKDLGSFCFSSTSQFSVNKCKKLAVSKKIVSVMAPQQSERRPATTGSVKNAMTLTEKIFSRASEKPQLSPGDNVWVNVDILMTHDVCGPGSFGIFKKEFGENAKVWDREKIVIIPDHYIFTSDERANRNVDILRDFCMEQNIKYFYDIKDLGNFKANPDYKGVCHIALAQEGHCRPGEVLLGTDSHTCTAGAFGQFATGIGNTDAGFVLGTGKVLLKVPPTLRFVLDGEMPDYLLAKDLILQIIGEISVAGATYKSMEFVGTTVERLSMEERMTLCNMVVEAGGKNGVVPADGTTFKYLEDKTSLPYEPVYSDEKAR
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query334 2.2.26 [Sep-21-2011]
Q94AR8 509 3-isopropylmalate dehydra yes no 0.988 0.648 0.770 1e-156
P81291 424 Isopropylmalate/citramala yes no 0.760 0.599 0.459 2e-64
O27439 419 3-isopropylmalate dehydra yes no 0.757 0.603 0.451 1e-61
Q8TVF2 418 3-isopropylmalate dehydra yes no 0.751 0.600 0.426 1e-57
Q8PUG1 420 3-isopropylmalate dehydra yes no 0.751 0.597 0.433 2e-57
Q8TQZ3 420 3-isopropylmalate dehydra yes no 0.751 0.597 0.437 2e-57
Q2LWJ2 420 3-isopropylmalate dehydra yes no 0.757 0.602 0.422 3e-55
B8CX22 420 3-isopropylmalate dehydra yes no 0.757 0.602 0.397 6e-55
B0TCR2 420 3-isopropylmalate dehydra yes no 0.760 0.604 0.387 8e-55
O28316 418 3-isopropylmalate dehydra yes no 0.754 0.602 0.416 5e-54
>sp|Q94AR8|LEUC_ARATH 3-isopropylmalate dehydratase OS=Arabidopsis thaliana GN=IIL1 PE=2 SV=1 Back     alignment and function desciption
 Score =  550 bits (1416), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 255/331 (77%), Positives = 293/331 (88%), Gaps = 1/331 (0%)

Query: 3   SSVISPAPTSSFINNKKDLGSFCFSSTSQFSVNKCKKLAVSKKIVSVMAPQQSERRPATT 62
           +SVIS +P     ++K DLG   F  +SQ S+++C+K ++S+KIVSVMAPQ+ +R P TT
Sbjct: 2   ASVISSSPFLCKSSSKSDLGISSFPKSSQISIHRCQKKSISRKIVSVMAPQK-DRSPGTT 60

Query: 63  GSVKNAMTLTEKIFSRASEKPQLSPGDNVWVNVDILMTHDVCGPGSFGIFKKEFGENAKV 122
           GSVK  MT+TEKI +RASEK  + PGDN+WVNVD+LMTHDVCGPG+FGIFK+EFGE AKV
Sbjct: 61  GSVKTGMTMTEKILARASEKSLVVPGDNIWVNVDVLMTHDVCGPGAFGIFKREFGEKAKV 120

Query: 123 WDREKIVIIPDHYIFTSDERANRNVDILRDFCMEQNIKYFYDIKDLGNFKANPDYKGVCH 182
           WD EKIV+IPDHYIFT+D+RANRNVDI+R+ C EQNIKYFYDI DLGNFKANPDYKGVCH
Sbjct: 121 WDPEKIVVIPDHYIFTADKRANRNVDIMREHCREQNIKYFYDITDLGNFKANPDYKGVCH 180

Query: 183 IALAQEGHCRPGEVLLGTDSHTCTAGAFGQFATGIGNTDAGFVLGTGKVLLKVPPTLRFV 242
           +ALAQEGHCRPGEVLLGTDSHTCTAGAFGQFATGIGNTDAGFVLGTGK+LLKVPPT+RF+
Sbjct: 181 VALAQEGHCRPGEVLLGTDSHTCTAGAFGQFATGIGNTDAGFVLGTGKILLKVPPTMRFI 240

Query: 243 LDGEMPDYLLAKDLILQIIGEISVAGATYKSMEFVGTTVERLSMEERMTLCNMVVEAGGK 302
           LDGEMP YL AKDLILQIIGEISVAGATYK+MEF GTT+E LSMEERMTLCNMVVEAGGK
Sbjct: 241 LDGEMPSYLQAKDLILQIIGEISVAGATYKTMEFSGTTIESLSMEERMTLCNMVVEAGGK 300

Query: 303 NGVVPADGTTFKYLEDKTSLPYEPVYSDEKA 333
           NGV+P D TT  Y+E++TS+P+EPVYSD  A
Sbjct: 301 NGVIPPDATTLNYVENRTSVPFEPVYSDGNA 331
Catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate.
Arabidopsis thaliana (taxid: 3702)
EC: 4EC: .EC: 2EC: .EC: 1EC: .EC: 3EC: 3
>sp|P81291|LEUC_METJA Isopropylmalate/citramalate isomerase large subunit OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) GN=leuC PE=1 SV=1 Back     alignment and function description
>sp|O27439|LEUC1_METTH 3-isopropylmalate dehydratase large subunit 1 OS=Methanothermobacter thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330 / Delta H) GN=leuC1 PE=3 SV=1 Back     alignment and function description
>sp|Q8TVF2|LEUC1_METKA 3-isopropylmalate dehydratase large subunit 1 OS=Methanopyrus kandleri (strain AV19 / DSM 6324 / JCM 9639 / NBRC 100938) GN=leuC1 PE=3 SV=1 Back     alignment and function description
>sp|Q8PUG1|LEUC2_METMA 3-isopropylmalate dehydratase large subunit 2 OS=Methanosarcina mazei (strain ATCC BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM 88) GN=leuC2 PE=3 SV=2 Back     alignment and function description
>sp|Q8TQZ3|LEUC2_METAC 3-isopropylmalate dehydratase large subunit 2 OS=Methanosarcina acetivorans (strain ATCC 35395 / DSM 2834 / JCM 12185 / C2A) GN=leuC2 PE=3 SV=1 Back     alignment and function description
>sp|Q2LWJ2|LEUC_SYNAS 3-isopropylmalate dehydratase large subunit OS=Syntrophus aciditrophicus (strain SB) GN=leuC PE=3 SV=1 Back     alignment and function description
>sp|B8CX22|LEUC_HALOH 3-isopropylmalate dehydratase large subunit OS=Halothermothrix orenii (strain H 168 / OCM 544 / DSM 9562) GN=leuC PE=3 SV=1 Back     alignment and function description
>sp|B0TCR2|LEUC_HELMI 3-isopropylmalate dehydratase large subunit OS=Heliobacterium modesticaldum (strain ATCC 51547 / Ice1) GN=leuC PE=3 SV=1 Back     alignment and function description
>sp|O28316|LEUC1_ARCFU 3-isopropylmalate dehydratase large subunit 1 OS=Archaeoglobus fulgidus (strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126) GN=leuC1 PE=3 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query334
255574875 510 3-isopropylmalate dehydratase, putative 0.949 0.621 0.865 1e-165
225433279 508 PREDICTED: 3-isopropylmalate dehydratase 0.991 0.651 0.841 1e-160
225439231 508 PREDICTED: 3-isopropylmalate dehydratase 0.874 0.574 0.907 1e-159
296085913 528 unnamed protein product [Vitis vinifera] 0.874 0.553 0.907 1e-159
449461279 510 PREDICTED: 3-isopropylmalate dehydratase 0.958 0.627 0.816 1e-158
224110650 462 predicted protein [Populus trichocarpa] 0.853 0.616 0.919 1e-157
356553399 500 PREDICTED: 3-isopropylmalate dehydratase 0.964 0.644 0.818 1e-157
356562389 502 PREDICTED: 3-isopropylmalate dehydratase 0.967 0.643 0.812 1e-156
357439825 505 3-isopropylmalate dehydratase [Medicago 0.982 0.649 0.784 1e-154
18414006 509 3-isopropylmalate dehydratase [Arabidops 0.988 0.648 0.770 1e-154
>gi|255574875|ref|XP_002528344.1| 3-isopropylmalate dehydratase, putative [Ricinus communis] gi|223532212|gb|EEF34016.1| 3-isopropylmalate dehydratase, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  586 bits (1510), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 277/320 (86%), Positives = 299/320 (93%), Gaps = 3/320 (0%)

Query: 17  NKKDLGSFCFSSTSQ--FSVNKCKKLAVSKKIVSVMAPQQSERRPATTGSVKNAMTLTEK 74
            KKDLG   FSS S   +S+ KCKK ++SKK+VSVMAPQQSER PATTGSVK AMT+TEK
Sbjct: 15  TKKDLGLSAFSSQSSPFYSIPKCKK-SISKKVVSVMAPQQSERTPATTGSVKTAMTMTEK 73

Query: 75  IFSRASEKPQLSPGDNVWVNVDILMTHDVCGPGSFGIFKKEFGENAKVWDREKIVIIPDH 134
           I +RASEK QLSPG+NVWVNVD+LMTHDVCGPGS GIFK+EFG+NA VWDREKIVIIPDH
Sbjct: 74  ILARASEKSQLSPGENVWVNVDVLMTHDVCGPGSIGIFKREFGQNATVWDREKIVIIPDH 133

Query: 135 YIFTSDERANRNVDILRDFCMEQNIKYFYDIKDLGNFKANPDYKGVCHIALAQEGHCRPG 194
           YIFT+DERANRNVDILRDFC EQN+KYFYDIKDL NFK NPDYKGVCH+ALAQEGHCRPG
Sbjct: 134 YIFTTDERANRNVDILRDFCQEQNVKYFYDIKDLSNFKVNPDYKGVCHVALAQEGHCRPG 193

Query: 195 EVLLGTDSHTCTAGAFGQFATGIGNTDAGFVLGTGKVLLKVPPTLRFVLDGEMPDYLLAK 254
           EVLLGTDSHTCTAGAFGQFATGIGNTDAGFVLGTGK+LLKVPPTLRFV+DGEMPDYLLAK
Sbjct: 194 EVLLGTDSHTCTAGAFGQFATGIGNTDAGFVLGTGKLLLKVPPTLRFVMDGEMPDYLLAK 253

Query: 255 DLILQIIGEISVAGATYKSMEFVGTTVERLSMEERMTLCNMVVEAGGKNGVVPADGTTFK 314
           DLILQIIGEISV+GATYKSMEFVGTTVE L+MEERMTLCNMVVEAGGKNGV+P+D TTFK
Sbjct: 254 DLILQIIGEISVSGATYKSMEFVGTTVESLNMEERMTLCNMVVEAGGKNGVIPSDSTTFK 313

Query: 315 YLEDKTSLPYEPVYSDEKAR 334
           YLEDKTS+P+EPVYSDEKAR
Sbjct: 314 YLEDKTSVPFEPVYSDEKAR 333

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225433279|ref|XP_002285491.1| PREDICTED: 3-isopropylmalate dehydratase [Vitis vinifera] gi|296083736|emb|CBI23725.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|225439231|ref|XP_002271046.1| PREDICTED: 3-isopropylmalate dehydratase-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|296085913|emb|CBI31237.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|449461279|ref|XP_004148369.1| PREDICTED: 3-isopropylmalate dehydratase-like [Cucumis sativus] gi|449505250|ref|XP_004162416.1| PREDICTED: 3-isopropylmalate dehydratase-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|224110650|ref|XP_002315591.1| predicted protein [Populus trichocarpa] gi|222864631|gb|EEF01762.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356553399|ref|XP_003545044.1| PREDICTED: 3-isopropylmalate dehydratase-like [Glycine max] Back     alignment and taxonomy information
>gi|356562389|ref|XP_003549454.1| PREDICTED: 3-isopropylmalate dehydratase-like [Glycine max] Back     alignment and taxonomy information
>gi|357439825|ref|XP_003590190.1| 3-isopropylmalate dehydratase [Medicago truncatula] gi|355479238|gb|AES60441.1| 3-isopropylmalate dehydratase [Medicago truncatula] Back     alignment and taxonomy information
>gi|18414006|ref|NP_567405.1| 3-isopropylmalate dehydratase [Arabidopsis thaliana] gi|75249794|sp|Q94AR8.1|LEUC_ARATH RecName: Full=3-isopropylmalate dehydratase; AltName: Full=Isopropylmalate isomerase large subunit 1; Short=AtIIL1; Flags: Precursor gi|15027971|gb|AAK76516.1| unknown protein [Arabidopsis thaliana] gi|21436051|gb|AAM51226.1| unknown protein [Arabidopsis thaliana] gi|332657878|gb|AEE83278.1| 3-isopropylmalate dehydratase [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query334
TAIR|locus:2142120 509 IIL1 "isopropyl malate isomera 0.988 0.648 0.770 2.1e-141
TIGR_CMR|CHY_0522 421 CHY_0522 "3-isopropylmalate de 0.757 0.600 0.399 1.9e-51
TIGR_CMR|DET_0828 416 DET_0828 "3-isopropylmalate de 0.745 0.598 0.406 1.8e-48
UNIPROTKB|Q0QLE2 420 dmdA "2,3-dimethylmalate dehyd 0.757 0.602 0.381 1.1e-46
UNIPROTKB|Q3AD33 417 leuC "3-isopropylmalate dehydr 0.745 0.597 0.382 1.2e-42
TIGR_CMR|CHY_1105 417 CHY_1105 "3-isopropylmalate de 0.745 0.597 0.382 1.2e-42
TIGR_CMR|GSU_1903 427 GSU_1903 "3-isopropylmalate de 0.694 0.543 0.391 3.4e-38
TIGR_CMR|DET_0448 417 DET_0448 "homoaconitate hydrat 0.736 0.589 0.367 8e-37
CGD|CAL0005750 776 LEU1 [Candida albicans (taxid: 0.658 0.283 0.359 4.2e-31
ASPGD|ASPL0000007160 772 luA [Emericella nidulans (taxi 0.760 0.329 0.339 5.4e-31
TAIR|locus:2142120 IIL1 "isopropyl malate isomerase large subunit 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1383 (491.9 bits), Expect = 2.1e-141, P = 2.1e-141
 Identities = 255/331 (77%), Positives = 293/331 (88%)

Query:     3 SSVISPAPTSSFINNKKDLGSFCFSSTSQFSVNKCKKLAVSKKIVSVMAPQQSERRPATT 62
             +SVIS +P     ++K DLG   F  +SQ S+++C+K ++S+KIVSVMAPQ+ +R P TT
Sbjct:     2 ASVISSSPFLCKSSSKSDLGISSFPKSSQISIHRCQKKSISRKIVSVMAPQK-DRSPGTT 60

Query:    63 GSVKNAMTLTEKIFSRASEKPQLSPGDNVWVNVDILMTHDVCGPGSFGIFKKEFGENAKV 122
             GSVK  MT+TEKI +RASEK  + PGDN+WVNVD+LMTHDVCGPG+FGIFK+EFGE AKV
Sbjct:    61 GSVKTGMTMTEKILARASEKSLVVPGDNIWVNVDVLMTHDVCGPGAFGIFKREFGEKAKV 120

Query:   123 WDREKIVIIPDHYIFTSDERANRNVDILRDFCMEQNIKYFYDIKDLGNFKANPDYKGVCH 182
             WD EKIV+IPDHYIFT+D+RANRNVDI+R+ C EQNIKYFYDI DLGNFKANPDYKGVCH
Sbjct:   121 WDPEKIVVIPDHYIFTADKRANRNVDIMREHCREQNIKYFYDITDLGNFKANPDYKGVCH 180

Query:   183 IALAQEGHCRPGEVLLGTDSHTCTAGAFGQFATGIGNTDAGFVLGTGKVLLKVPPTLRFV 242
             +ALAQEGHCRPGEVLLGTDSHTCTAGAFGQFATGIGNTDAGFVLGTGK+LLKVPPT+RF+
Sbjct:   181 VALAQEGHCRPGEVLLGTDSHTCTAGAFGQFATGIGNTDAGFVLGTGKILLKVPPTMRFI 240

Query:   243 LDGEMPDYLLAKDLILQIIGEISVAGATYKSMEFVGTTVERLSMEERMTLCNMVVEAGGK 302
             LDGEMP YL AKDLILQIIGEISVAGATYK+MEF GTT+E LSMEERMTLCNMVVEAGGK
Sbjct:   241 LDGEMPSYLQAKDLILQIIGEISVAGATYKTMEFSGTTIESLSMEERMTLCNMVVEAGGK 300

Query:   303 NGVVPADGTTFKYLEDKTSLPYEPVYSDEKA 333
             NGV+P D TT  Y+E++TS+P+EPVYSD  A
Sbjct:   301 NGVIPPDATTLNYVENRTSVPFEPVYSDGNA 331
GO:0008152 "metabolic process" evidence=IEA;ISS
GO:0008652 "cellular amino acid biosynthetic process" evidence=IEA
GO:0016829 "lyase activity" evidence=ISS
GO:0016836 "hydro-lyase activity" evidence=IEA
GO:0051539 "4 iron, 4 sulfur cluster binding" evidence=IEA
GO:0046686 "response to cadmium ion" evidence=IEP;RCA
GO:0009507 "chloroplast" evidence=IDA
GO:0009570 "chloroplast stroma" evidence=IDA
GO:0019761 "glucosinolate biosynthetic process" evidence=RCA;IMP
GO:0050486 "intramolecular transferase activity, transferring hydroxy groups" evidence=IMP
GO:0000023 "maltose metabolic process" evidence=RCA
GO:0006094 "gluconeogenesis" evidence=RCA
GO:0006096 "glycolysis" evidence=RCA
GO:0009651 "response to salt stress" evidence=RCA
GO:0019252 "starch biosynthetic process" evidence=RCA
GO:0009536 "plastid" evidence=IDA
TIGR_CMR|CHY_0522 CHY_0522 "3-isopropylmalate dehydratase, large subunit" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] Back     alignment and assigned GO terms
TIGR_CMR|DET_0828 DET_0828 "3-isopropylmalate dehydratase, large subunit" [Dehalococcoides ethenogenes 195 (taxid:243164)] Back     alignment and assigned GO terms
UNIPROTKB|Q0QLE2 dmdA "2,3-dimethylmalate dehydratase large subunit" [Eubacterium barkeri (taxid:1528)] Back     alignment and assigned GO terms
UNIPROTKB|Q3AD33 leuC "3-isopropylmalate dehydratase large subunit" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] Back     alignment and assigned GO terms
TIGR_CMR|CHY_1105 CHY_1105 "3-isopropylmalate dehydratase, large subunit family protein" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] Back     alignment and assigned GO terms
TIGR_CMR|GSU_1903 GSU_1903 "3-isopropylmalate dehydratase, large subunit, putative" [Geobacter sulfurreducens PCA (taxid:243231)] Back     alignment and assigned GO terms
TIGR_CMR|DET_0448 DET_0448 "homoaconitate hydratase family protein" [Dehalococcoides ethenogenes 195 (taxid:243164)] Back     alignment and assigned GO terms
CGD|CAL0005750 LEU1 [Candida albicans (taxid:5476)] Back     alignment and assigned GO terms
ASPGD|ASPL0000007160 luA [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q94AR8LEUC_ARATH4, ., 2, ., 1, ., 3, 30.77030.98800.6483yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer4.2.10.963
3rd Layer4.2.1.330.946

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query334
cd01583 382 cd01583, IPMI, 3-isopropylmalate dehydratase catal 1e-114
PRK00402 418 PRK00402, PRK00402, 3-isopropylmalate dehydratase 1e-113
COG0065 423 COG0065, LeuC, 3-isopropylmalate dehydratase large 1e-102
TIGR01343 412 TIGR01343, hacA_fam, homoaconitate hydratase famil 5e-87
TIGR02086 412 TIGR02086, IPMI_arch, 3-isopropylmalate dehydratas 2e-79
TIGR02083 419 TIGR02083, LEU2, 3-isopropylmalate dehydratase, la 2e-72
PRK12466 471 PRK12466, PRK12466, isopropylmalate isomerase larg 4e-55
PRK05478 466 PRK05478, PRK05478, isopropylmalate isomerase larg 6e-43
pfam00330 464 pfam00330, Aconitase, Aconitase family (aconitate 1e-41
cd01351 389 cd01351, Aconitase, Aconitase catalytic domain; Ac 5e-41
TIGR00170 465 TIGR00170, leuC, 3-isopropylmalate dehydratase, la 4e-38
TIGR01342 658 TIGR01342, acon_putative, aconitate hydratase, put 4e-30
cd01585 380 cd01585, AcnA_Bact, Aconitase catalyzes the revers 8e-29
COG1048 861 COG1048, AcnA, Aconitase A [Energy production and 3e-28
PRK07229 646 PRK07229, PRK07229, aconitate hydratase; Validated 2e-25
cd01582 363 cd01582, Homoaconitase, Homoaconitase and other un 3e-23
TIGR00139 712 TIGR00139, h_aconitase, homoaconitase 1e-22
cd01584 412 cd01584, AcnA_Mitochondrial, Aconitase catalyzes t 7e-19
TIGR01340 745 TIGR01340, aconitase_mito, aconitate hydratase, mi 7e-18
TIGR01341 876 TIGR01341, aconitase_1, aconitate hydratase 1 3e-14
PTZ00092 898 PTZ00092, PTZ00092, aconitate hydratase-like prote 1e-13
cd01586 404 cd01586, AcnA_IRP, Aconitase A catalytic domain 5e-11
PRK12881 889 PRK12881, acnA, aconitate hydratase; Provisional 2e-10
PLN00070 936 PLN00070, PLN00070, aconitate hydratase 3e-10
TIGR02333 858 TIGR02333, 2met_isocit_dHY, 2-methylisocitrate deh 3e-08
PRK09277 888 PRK09277, PRK09277, aconitate hydratase; Validated 2e-05
PRK11413 751 PRK11413, PRK11413, putative hydratase; Provisiona 3e-04
>gnl|CDD|153133 cd01583, IPMI, 3-isopropylmalate dehydratase catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate Back     alignment and domain information 
 Score =  335 bits (862), Expect = e-114
 Identities = 112/238 (47%), Positives = 149/238 (62%), Gaps = 13/238 (5%)

Query: 97  ILMTHDVCGPGSFGIFKKEFGENAKVWDREKIVIIPDHYIFTSDERANRNVDILRDFCME 156
           + + HDV  P +F   ++   E  KVWD EKIV + DH + T D +A   V  LR F  E
Sbjct: 1   LHLVHDVTSPQAFEGLREAGRE--KVWDPEKIVAVFDHNVPTPDIKAAEQVKTLRKFAKE 58

Query: 157 QNIKYFYDIKDLGNFKANPDYKGVCHIALAQEGHCRPGEVLLGTDSHTCTAGAFGQFATG 216
             I  F+D+            +G+CH+ L ++G   PG  ++G DSHTCT GAFG FATG
Sbjct: 59  FGIN-FFDV----------GRQGICHVILPEKGLTLPGMTIVGGDSHTCTHGAFGAFATG 107

Query: 217 IGNTDAGFVLGTGKVLLKVPPTLRFVLDGEMPDYLLAKDLILQIIGEISVAGATYKSMEF 276
           IG TD   VL TGK+  +VP T+R  ++G++P  + AKD+IL IIG+I V GATYK+MEF
Sbjct: 108 IGTTDVAHVLATGKLWFRVPETMRVNVEGKLPPGVTAKDVILYIIGKIGVDGATYKAMEF 167

Query: 277 VGTTVERLSMEERMTLCNMVVEAGGKNGVVPADGTTFKYLEDKTSLPYEPVYSDEKAR 334
            G  +E LSMEERMTLCNM +EAG K G+V  D TTF+YL+ +    ++ + SDE A 
Sbjct: 168 AGEAIESLSMEERMTLCNMAIEAGAKAGIVAPDETTFEYLKGRGKAYWKELKSDEDAE 225

Aconatase-like catalytic domain of 3-isopropylmalate dehydratase and related uncharacterized proteins. 3-isopropylmalate dehydratase catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate 3-isopropylmalate. IPMI is involved in fungal and bacterial leucine biosynthesis and is also found in eukaryotes. Length = 382
>gnl|CDD|234748 PRK00402, PRK00402, 3-isopropylmalate dehydratase large subunit; Reviewed Back     alignment and domain information
>gnl|CDD|223143 COG0065, LeuC, 3-isopropylmalate dehydratase large subunit [Amino acid transport and metabolism] Back     alignment and domain information
>gnl|CDD|130410 TIGR01343, hacA_fam, homoaconitate hydratase family protein Back     alignment and domain information
>gnl|CDD|233715 TIGR02086, IPMI_arch, 3-isopropylmalate dehydratase, large subunit Back     alignment and domain information
>gnl|CDD|131138 TIGR02083, LEU2, 3-isopropylmalate dehydratase, large subunit Back     alignment and domain information
>gnl|CDD|183543 PRK12466, PRK12466, isopropylmalate isomerase large subunit; Provisional Back     alignment and domain information
>gnl|CDD|235490 PRK05478, PRK05478, isopropylmalate isomerase large subunit; Validated Back     alignment and domain information
>gnl|CDD|215861 pfam00330, Aconitase, Aconitase family (aconitate hydratase) Back     alignment and domain information
>gnl|CDD|153129 cd01351, Aconitase, Aconitase catalytic domain; Aconitase catalyzes the reversible isomerization of citrate and isocitrate as part of the TCA cycle Back     alignment and domain information
>gnl|CDD|232854 TIGR00170, leuC, 3-isopropylmalate dehydratase, large subunit Back     alignment and domain information
>gnl|CDD|130409 TIGR01342, acon_putative, aconitate hydratase, putative, Aquifex type Back     alignment and domain information
>gnl|CDD|153135 cd01585, AcnA_Bact, Aconitase catalyzes the reversible isomerization of citrate and isocitrate as part of the TCA cycle Back     alignment and domain information
>gnl|CDD|223977 COG1048, AcnA, Aconitase A [Energy production and conversion] Back     alignment and domain information
>gnl|CDD|235974 PRK07229, PRK07229, aconitate hydratase; Validated Back     alignment and domain information
>gnl|CDD|153132 cd01582, Homoaconitase, Homoaconitase and other uncharacterized proteins of the Aconitase family Back     alignment and domain information
>gnl|CDD|129245 TIGR00139, h_aconitase, homoaconitase Back     alignment and domain information
>gnl|CDD|153134 cd01584, AcnA_Mitochondrial, Aconitase catalyzes the reversible isomerization of citrate and isocitrate as part of the TCA cycle Back     alignment and domain information
>gnl|CDD|233362 TIGR01340, aconitase_mito, aconitate hydratase, mitochondrial Back     alignment and domain information
>gnl|CDD|233363 TIGR01341, aconitase_1, aconitate hydratase 1 Back     alignment and domain information
>gnl|CDD|240263 PTZ00092, PTZ00092, aconitate hydratase-like protein; Provisional Back     alignment and domain information
>gnl|CDD|153136 cd01586, AcnA_IRP, Aconitase A catalytic domain Back     alignment and domain information
>gnl|CDD|237246 PRK12881, acnA, aconitate hydratase; Provisional Back     alignment and domain information
>gnl|CDD|215047 PLN00070, PLN00070, aconitate hydratase Back     alignment and domain information
>gnl|CDD|131386 TIGR02333, 2met_isocit_dHY, 2-methylisocitrate dehydratase, Fe/S-dependent Back     alignment and domain information
>gnl|CDD|236445 PRK09277, PRK09277, aconitate hydratase; Validated Back     alignment and domain information
>gnl|CDD|183125 PRK11413, PRK11413, putative hydratase; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 334
COG0065 423 LeuC 3-isopropylmalate dehydratase large subunit [ 100.0
TIGR02083 419 LEU2 3-isopropylmalate dehydratase, large subunit. 100.0
TIGR01343 412 hacA_fam homoaconitate hydratase family protein. T 100.0
PRK00402 418 3-isopropylmalate dehydratase large subunit; Revie 100.0
TIGR02086 412 IPMI_arch 3-isopropylmalate dehydratase, large sub 100.0
TIGR00170 465 leuC 3-isopropylmalate dehydratase, large subunit. 100.0
PRK12466 471 isopropylmalate isomerase large subunit; Provision 100.0
PRK05478 466 isopropylmalate isomerase large subunit; Validated 100.0
PF00330 465 Aconitase: Aconitase family (aconitate hydratase); 100.0
TIGR00139 712 h_aconitase homoaconitase. Homoaconitase, aconitas 100.0
cd01583 382 IPMI 3-isopropylmalate dehydratase catalyzes the i 100.0
TIGR01342 658 acon_putative aconitate hydratase, putative, Aquif 100.0
PRK07229 646 aconitate hydratase; Validated 100.0
TIGR01340 745 aconitase_mito aconitate hydratase, mitochondrial. 100.0
cd01581 436 AcnB Aconitate hydratase B catalyses the formation 100.0
cd01585 380 AcnA_Bact Aconitase catalyzes the reversible isome 100.0
PRK11413 751 putative hydratase; Provisional 100.0
cd01584 412 AcnA_Mitochondrial Aconitase catalyzes the reversi 100.0
PRK09238 835 bifunctional aconitate hydratase 2/2-methylisocitr 100.0
cd01582 363 Homoaconitase Homoaconitase and other uncharacteri 100.0
TIGR00117 844 acnB aconitate hydratase 2. Aconitate hydratase (a 100.0
PLN00094 938 aconitate hydratase 2; Provisional 100.0
cd01351 389 Aconitase Aconitase catalytic domain; Aconitase ca 100.0
PRK09277 888 aconitate hydratase; Validated 100.0
PTZ00092 898 aconitate hydratase-like protein; Provisional 100.0
PLN00070 936 aconitate hydratase 100.0
PRK12881 889 acnA aconitate hydratase; Provisional 100.0
TIGR01341 876 aconitase_1 aconitate hydratase 1. This model repr 100.0
TIGR02333 858 2met_isocit_dHY 2-methylisocitrate dehydratase, Fe 100.0
cd01586 404 AcnA_IRP Aconitase A catalytic domain. Aconitase A 100.0
COG1048 861 AcnA Aconitase A [Energy production and conversion 100.0
KOG0453 778 consensus Aconitase/homoaconitase (aconitase super 100.0
KOG0452 892 consensus RNA-binding translational regulator IRP 100.0
KOG0454 502 consensus 3-isopropylmalate dehydratase (aconitase 100.0
COG1049 852 AcnB Aconitase B [Energy production and conversion 99.94
>COG0065 LeuC 3-isopropylmalate dehydratase large subunit [Amino acid transport and metabolism] Back     alignment and domain information 
Probab=100.00  E-value=1e-88  Score=662.81  Aligned_cols=255  Identities=43%  Similarity=0.689  Sum_probs=246.7

Q ss_pred             CCCcHHHHHHHHhcCCCCCCCCCeEEEeeeEEEecCCChHHHHHHHHHHhCCCCcccCCccEEEEecCCCCCCcHHHHHH
Q 019862           67 NAMTLTEKIFSRASEKPQLSPGDNVWVNVDILMTHDVCGPGSFGIFKKEFGENAKVWDREKIVIIPDHYIFTSDERANRN  146 (334)
Q Consensus        67 ~~mTl~EKIla~h~~~~~v~~Gd~v~v~vD~v~~hD~t~p~~i~~~~~~~G~~~~V~dP~kv~~~~DH~vp~~~~~~a~~  146 (334)
                      ++|||+||||++|++.+.+.+||.+.+++|++|+||+|+|++|+.|+ ++|.  +||+|+|+++++||++|+++.+.+++
T Consensus         1 ~~~Tl~eKI~~~h~~~~~~~~G~~~~~~iD~~l~HdvTsP~a~~~lr-~~g~--kV~~p~k~~~~~DH~vPt~~~~~a~~   77 (423)
T COG0065           1 SAKTLYEKILDAHVGKEEVGAGETVLLYIDLHLVHDVTSPQAFEGLR-EAGR--KVRDPEKTVATFDHNVPTPDIKAAEQ   77 (423)
T ss_pred             CCccHHHHHHHHhcccccCCCCCcEEEEeeeeeeeccccHHHHHHHH-HhCC--cccCccceEEEecCCCCCccHHHHHH
Confidence            36999999999999998899999999999999999999999999996 5874  99999999999999999999999999


Q ss_pred             HHHHHHHHHHcCcceeeeccccCCcccCCCCCeeeeeeecceeeeeCCceEEeCCCCCcccCcccceeecCchhHHHHHH
Q 019862          147 VDILRDFCMEQNIKYFYDIKDLGNFKANPDYKGVCHIALAQEGHCRPGEVLLGTDSHTCTAGAFGQFATGIGNTDAGFVL  226 (334)
Q Consensus       147 ~~~lr~fa~~~gi~~f~d~~~~~~~~v~pp~~GI~Hqvl~Eeg~~~PG~vvvGtDSHT~t~GAlGa~a~GvG~td~a~~l  226 (334)
                      ++.+|+||+++||.+|||.++          +|||||+++|+|+++||++|||+||||||||||||||+|||+||++++|
T Consensus        78 ~~~lr~~~ke~Gi~~~~~~g~----------~GI~H~v~pE~G~~~PG~~Iv~gDSHT~T~GAfGAfA~GiGttdva~vl  147 (423)
T COG0065          78 QKELRENAKEFGIVNFYDVGD----------QGIVHQVGPEQGLTLPGMTIVGGDSHTCTHGAFGAFAFGIGTTDVAHVL  147 (423)
T ss_pred             HHHHHHHHHHhCCeeeecCCC----------CcEEEEEeccccccCCCcEEEecccCcccchhhhhhhccccHHHHHHHH
Confidence            999999999999999999873          7999999999999999999999999999999999999999999999999


Q ss_pred             hcceEEeecCCeEEEEEEeeCCCCCCHHHHHHHHHHHhcccCccceEEEEecccccCCCHHhHHhhhhhhhhcCceEeee
Q 019862          227 GTGKVLLKVPPTLRFVLDGEMPDYLLAKDLILQIIGEISVAGATYKSMEFVGTTVERLSMEERMTLCNMVVEAGGKNGVV  306 (334)
Q Consensus       227 ~tG~~wlkvPetvrV~l~G~L~~gV~aKDliL~ii~~lg~~G~~gk~vEF~G~gv~~Ls~~eR~Tl~NMa~E~GAk~gi~  306 (334)
                      +||++||++||+++|+++|+||+||+||||||+||+++|.+|++|+++||+|+.+++|||++|||||||++|+|||+|||
T Consensus       148 atg~lw~~vpktm~v~v~G~l~~gV~aKDiiL~iIg~iG~~g~t~~aiEf~Ge~i~~lsme~RmTicNMaIE~GAkaGii  227 (423)
T COG0065         148 ATGKLWFRVPKTMKVEVEGKLPPGVTAKDIILALIGKIGVDGGTGYAIEFAGEAIRSLSMEGRMTLCNMAIEAGAKAGII  227 (423)
T ss_pred             HhCceeeeccceEEEEEecccCCCccHHHHHHHHHHHhccCCcceEEEEEeccchhhCChhhhhhhhhhhhhhcccceee
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCChhHHHHhhhcCC--CCCccccCCCCCC
Q 019862          307 PADGTTFKYLEDKTS--LPYEPVYSDEKAR  334 (334)
Q Consensus       307 ~pDe~t~~YL~~r~~--~~~~~~~sD~dA~  334 (334)
                      +||++|++||+.+..  ..|+.+++|+||.
T Consensus       228 ~pDe~T~~Y~k~~~~a~~~~~~l~sD~dA~  257 (423)
T COG0065         228 APDETTFEYLKEWDGAVAYWKTLKSDEDAV  257 (423)
T ss_pred             CCcHhHHHHHHHHhccccccceecCCCCCc
Confidence            999999999997765  7899999999984

>TIGR02083 LEU2 3-isopropylmalate dehydratase, large subunit Back     alignment and domain information
>TIGR01343 hacA_fam homoaconitate hydratase family protein Back     alignment and domain information
>PRK00402 3-isopropylmalate dehydratase large subunit; Reviewed Back     alignment and domain information
>TIGR02086 IPMI_arch 3-isopropylmalate dehydratase, large subunit Back     alignment and domain information
>TIGR00170 leuC 3-isopropylmalate dehydratase, large subunit Back     alignment and domain information
>PRK12466 isopropylmalate isomerase large subunit; Provisional Back     alignment and domain information
>PRK05478 isopropylmalate isomerase large subunit; Validated Back     alignment and domain information
>PF00330 Aconitase: Aconitase family (aconitate hydratase); InterPro: IPR001030 Aconitase (aconitate hydratase; 4 Back     alignment and domain information
>TIGR00139 h_aconitase homoaconitase Back     alignment and domain information
>cd01583 IPMI 3-isopropylmalate dehydratase catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate Back     alignment and domain information
>TIGR01342 acon_putative aconitate hydratase, putative, Aquifex type Back     alignment and domain information
>PRK07229 aconitate hydratase; Validated Back     alignment and domain information
>TIGR01340 aconitase_mito aconitate hydratase, mitochondrial Back     alignment and domain information
>cd01581 AcnB Aconitate hydratase B catalyses the formation of cis-aconitate from citrate as part of the TCA cycle Back     alignment and domain information
>cd01585 AcnA_Bact Aconitase catalyzes the reversible isomerization of citrate and isocitrate as part of the TCA cycle Back     alignment and domain information
>PRK11413 putative hydratase; Provisional Back     alignment and domain information
>cd01584 AcnA_Mitochondrial Aconitase catalyzes the reversible isomerization of citrate and isocitrate as part of the TCA cycle Back     alignment and domain information
>PRK09238 bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase; Validated Back     alignment and domain information
>cd01582 Homoaconitase Homoaconitase and other uncharacterized proteins of the Aconitase family Back     alignment and domain information
>TIGR00117 acnB aconitate hydratase 2 Back     alignment and domain information
>PLN00094 aconitate hydratase 2; Provisional Back     alignment and domain information
>cd01351 Aconitase Aconitase catalytic domain; Aconitase catalyzes the reversible isomerization of citrate and isocitrate as part of the TCA cycle Back     alignment and domain information
>PRK09277 aconitate hydratase; Validated Back     alignment and domain information
>PTZ00092 aconitate hydratase-like protein; Provisional Back     alignment and domain information
>PLN00070 aconitate hydratase Back     alignment and domain information
>PRK12881 acnA aconitate hydratase; Provisional Back     alignment and domain information
>TIGR01341 aconitase_1 aconitate hydratase 1 Back     alignment and domain information
>TIGR02333 2met_isocit_dHY 2-methylisocitrate dehydratase, Fe/S-dependent Back     alignment and domain information
>cd01586 AcnA_IRP Aconitase A catalytic domain Back     alignment and domain information
>COG1048 AcnA Aconitase A [Energy production and conversion] Back     alignment and domain information
>KOG0453 consensus Aconitase/homoaconitase (aconitase superfamily) [Energy production and conversion; Amino acid transport and metabolism] Back     alignment and domain information
>KOG0452 consensus RNA-binding translational regulator IRP (aconitase superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG0454 consensus 3-isopropylmalate dehydratase (aconitase superfamily) [Amino acid transport and metabolism] Back     alignment and domain information
>COG1049 AcnB Aconitase B [Energy production and conversion] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query334
2b3x_A 888 Structure Of An Orthorhombic Crystal Form Of Human 5e-13
1b0m_A 753 Aconitase R644q:fluorocitrate Complex Length = 753 5e-11
5acn_A 754 Structure Of Activated Aconitase. Formation Of The 6e-11
1c96_A 753 S642a:citrate Complex Of Aconitase Length = 753 6e-11
1b0j_A 754 Crystal Structure Of Aconitase With Isocitrate Leng 6e-11
1c97_A 753 S642a:isocitrate Complex Of Aconitase Length = 753 6e-11
1nis_A 754 Crystal Structure Of Aconitase With Trans-Aconitate 6e-11
1ami_A 754 Steric And Conformational Features Of The Aconitase 6e-11
1aco_A 754 Crystal Structure Of Aconitase With Transaconitate 6e-11
3snp_A 908 Crystal Structure Analysis Of Iron Regulatory Prote 2e-10
>pdb|2B3X|A Chain A, Structure Of An Orthorhombic Crystal Form Of Human Cytosolic Aconitase (Irp1) Length = 888 Back     alignment and structure 
Iteration: 1

 Score = 71.6 bits (174), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 55/212 (25%), Positives = 91/212 (42%), Gaps = 18/212 (8%)
Query: 130 IIPDHYIFTSDERANRNVDILRDFCMEQNIKYFYDIK----DLGNFKANPDYKGVCH--- 182
           ++ DH I     R   ++   +D   E+N + F  +K       N +  P   G+ H   
Sbjct: 121 LVIDHSIQVDFNRRADSLQKNQDLEFERNRERFEFLKWGSQAFHNMRIIPPGSGIIHQVN 180
Query: 183 ------IALAQEGHCRPGEVLLGTDSHTCTAGAFGQFATGIGNTDAGFVLGTGKVLLKVP 236
                 +   Q+G+  P + L+GTDSHT      G    G+G  +A  V+    + + +P
Sbjct: 181 LEYLARVVFDQDGYYYP-DSLVGTDSHTTMIDGLGILGWGVGGIEAEAVMLGQPISMVLP 239
Query: 237 PTLRFVLDGEMPDYLLAKDLILQIIGEISVAGATYKSMEFVGTTVERLSMEERMTLCNMV 296
             + + L G+    + + D++L I   +   G   K +EF G  V +LS+ +R T+ NM 
Sbjct: 240 QVIGYRLMGKPHPLVTSTDIVLTITKHLRQVGVVGKFVEFFGPGVAQLSIADRATIANMC 299
Query: 297 VEAGGKNGVVPADGTTFKYL----EDKTSLPY 324
            E G      P D  +  YL     D+  L Y
Sbjct: 300 PEYGATAAFFPVDEVSITYLVQTGRDEEKLKY 331
>pdb|1B0M|A Chain A, Aconitase R644q:fluorocitrate Complex Length = 753 Back     alignment and structure
>pdb|5ACN|A Chain A, Structure Of Activated Aconitase. Formation Of The (4fe-4s) Cluster In The Crystal Length = 754 Back     alignment and structure
>pdb|1C96|A Chain A, S642a:citrate Complex Of Aconitase Length = 753 Back     alignment and structure
>pdb|1B0J|A Chain A, Crystal Structure Of Aconitase With Isocitrate Length = 754 Back     alignment and structure
>pdb|1C97|A Chain A, S642a:isocitrate Complex Of Aconitase Length = 753 Back     alignment and structure
>pdb|1NIS|A Chain A, Crystal Structure Of Aconitase With Trans-Aconitate And Nitrocitrate Bound Length = 754 Back     alignment and structure
>pdb|1AMI|A Chain A, Steric And Conformational Features Of The Aconitase Mechanism Length = 754 Back     alignment and structure
>pdb|1ACO|A Chain A, Crystal Structure Of Aconitase With Transaconitate Bound Length = 754 Back     alignment and structure
>pdb|3SNP|A Chain A, Crystal Structure Analysis Of Iron Regulatory Protein 1 In Complex With Ferritin H Ire Rna Length = 908 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query334
1l5j_A 865 Aconitate hydratase 2; molecular recognition, RNA 1e-55
1c96_A 753 Mitochondrial aconitase; lyase, tricarboxylic acid 7e-26
2b3y_A 888 Iron-responsive element binding protein 1; IRP1 IR 2e-10
>1l5j_A Aconitate hydratase 2; molecular recognition, RNA binding, citric acid cycle, heat- like domain, lyase; HET: TRA; 2.40A {Escherichia coli} SCOP: a.118.15.1 c.8.2.1 c.83.1.1 Length = 865 Back     alignment and structure
 Score =  193 bits (492), Expect = 1e-55
 Identities = 46/277 (16%), Positives = 78/277 (28%), Gaps = 31/277 (11%)

Query: 57  RRPATTGSVKNAMTLTEKIFSRASEKPQLSPGDNVWVNVDILMTHDVCGPGSFGIFKKEF 116
           R+           +L +K+  RA     + PG      +  + + D  GP +    K   
Sbjct: 370 RQAKDVAESDRGFSLAQKMVGRACGVKGIRPGAYCEPKMTSVGSQDTTGPMTRDELKDL- 428

Query: 117 GENAKVWDREKIVIIPDHYIFTSDERANRNVDILRDFCMEQNIKYFYDIKDLGNFKANPD 176
                 +  + ++    H               L DF M +                   
Sbjct: 429 --ACLGFSADLVMQSFCHTAAYPKPVDVNTHHTLPDFIMNRGGVSLRP------------ 474

Query: 177 YKGVCHIALAQEGHCRPGEVLLGTDSHTCTAGAFGQFATGIGNTDAGFVLGTGKVLLKVP 236
             GV H  L       P  V  G DSHT         +   G+    F   TG + L +P
Sbjct: 475 GDGVIHSWL--NRMLLPDTVGTGGDSHTRFPIGI---SFPAGSGLVAFAAATGVMPLDMP 529

Query: 237 PTLRFVLDGEMPDYLLAKDLILQIIGEISVAGAT----------YKSMEFVGTTVERLSM 286
            ++     G+M   +  +DL+  I       G            +         +  L +
Sbjct: 530 ESVLVRFKGKMQPGITLRDLVHAIPLYAIKQGLLTVEKKGKKNIFSGRILEIEGLPDLKV 589

Query: 287 EERMTLCNMVVEAGGKNGVVPADG-TTFKYLEDKTSL 322
           E+   L +   E       +  +     +YL     L
Sbjct: 590 EQAFELTDASAERSAAGCTIKLNKEPIIEYLNSNIVL 626
>1c96_A Mitochondrial aconitase; lyase, tricarboxylic acid cycle, iron-sulfur, mitochondrion, transit peptide, 4Fe-4S, 3D-structure; HET: FLC; 1.81A {Bos taurus} SCOP: c.8.2.1 c.83.1.1 PDB: 1c97_A* 1b0k_A* 1b0j_A* 7acn_A* 6acn_A* 5acn_A* 1b0m_A* 1ami_A* 1amj_A 8acn_A* 1fgh_A* 1aco_A* 1nis_A* 1nit_A Length = 753 Back     alignment and structure
>2b3y_A Iron-responsive element binding protein 1; IRP1 IRE-IRP1 aconitase activity, lyase; 1.85A {Homo sapiens} SCOP: c.8.2.1 c.83.1.1 PDB: 2b3x_A 3snp_A 3sn2_A 2ipy_A Length = 888 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query334
1c96_A 753 Mitochondrial aconitase; lyase, tricarboxylic acid 100.0
2b3y_A 888 Iron-responsive element binding protein 1; IRP1 IR 100.0
1l5j_A 865 Aconitate hydratase 2; molecular recognition, RNA 100.0
>1c96_A Mitochondrial aconitase; lyase, tricarboxylic acid cycle, iron-sulfur, mitochondrion, transit peptide, 4Fe-4S, 3D-structure; HET: FLC; 1.81A {Bos taurus} SCOP: c.8.2.1 c.83.1.1 PDB: 1c97_A* 1b0k_A* 1b0j_A* 7acn_A* 6acn_A* 5acn_A* 1b0m_A* 1ami_A* 1amj_A 8acn_A* 1fgh_A* 1aco_A* 1nis_A* 1nit_A Back     alignment and structure
Probab=100.00  E-value=1.7e-73  Score=598.85  Aligned_cols=252  Identities=26%  Similarity=0.367  Sum_probs=230.9

Q ss_pred             CCCCcHHHHHHHHhcCCCC---C-CCCCeEEEeeeEEEecCCChHHHHHHHHHHhCCCCcccCCccEEEEecCCCCCC--
Q 019862           66 KNAMTLTEKIFSRASEKPQ---L-SPGDNVWVNVDILMTHDVCGPGSFGIFKKEFGENAKVWDREKIVIIPDHYIFTS--  139 (334)
Q Consensus        66 ~~~mTl~EKIla~h~~~~~---v-~~Gd~v~v~vD~v~~hD~t~p~~i~~~~~~~G~~~~V~dP~kv~~~~DH~vp~~--  139 (334)
                      ++||||+||||++|++...   + ++||++.+++|++++||+|+|+++..|++ +|. .++++|+++  ++||++|+.  
T Consensus        32 ~~~~Tl~eKIl~~H~~~~~~~~~~~~g~~i~~~~drvl~hD~T~~~a~~~l~~-~G~-~~v~~P~~~--~~DH~v~~~~~  107 (753)
T 1c96_A           32 NRPLTLSEKIVYGHLDDPANQEIERGKTYLRLRPDRVAMQDATAQMAMLQFIS-SGL-PKVAVPSTI--HCDHLIEAQLG  107 (753)
T ss_dssp             CSCCCHHHHHHHTTBSCTTTCCCCTTTCEEEECCSEEEEETTTHHHHHHHHHH-HTC-SSCSSCEEE--ECCSSCCBSSC
T ss_pred             CCCCCHHHHHHHHHhCCcccccccCCCCEEEEEccEEEEeccccHHHHHHHHH-hCC-CCCCCCCce--ecCCCCCCCCC
Confidence            4689999999999998652   3 67899999999999999999999999964 784 679999884  699999998  


Q ss_pred             ---c-----HHHHHHHHHHHHHHHHcCcceeeeccccCCcccCCCCCeeeeeeecceeeeeCCceEEeCCCCCcccCccc
Q 019862          140 ---D-----ERANRNVDILRDFCMEQNIKYFYDIKDLGNFKANPDYKGVCHIALAQEGHCRPGEVLLGTDSHTCTAGAFG  211 (334)
Q Consensus       140 ---~-----~~~a~~~~~lr~fa~~~gi~~f~d~~~~~~~~v~pp~~GI~Hqvl~Eeg~~~PG~vvvGtDSHT~t~GAlG  211 (334)
                         +     ..+.++++++|+||+++||. ||           ||++|||||+++|. ++.||+++||+||||||+||||
T Consensus       108 ~~~d~~~~~~~n~e~~~~l~~~a~~~gi~-~~-----------~pg~GI~Hqv~~E~-~~~Pg~~ivGtDSHT~t~GalG  174 (753)
T 1c96_A          108 GEKDLRRAKDINQEVYNFLATAGAKYGVG-FW-----------RPGSGIIHQIILEN-YAYPGVLLIGTDSHTPNGGGLG  174 (753)
T ss_dssp             HHHHHHHHHHHTHHHHHHHHHHHHHHTCE-EE-----------CTTSBCHHHHHHHH-TCCTTCEEEESSTTGGGGGGGT
T ss_pred             cccchhhhhhhHHHHHHHHHHHHHHCCCE-EE-----------CCCCCeeCeEeccc-ccCCCcEEecCCCCCCccchhh
Confidence               2     34558899999999999995 55           56799999999886 9999999999999999999999


Q ss_pred             ceeecCchhHHHHHHhcceEEeecCCeEEEEEEeeCCCCCCHHHHHHHHHHHhcccCccceEEEEecccccCCCHHhHHh
Q 019862          212 QFATGIGNTDAGFVLGTGKVLLKVPPTLRFVLDGEMPDYLLAKDLILQIIGEISVAGATYKSMEFVGTTVERLSMEERMT  291 (334)
Q Consensus       212 a~a~GvG~td~a~~l~tG~~wlkvPetvrV~l~G~L~~gV~aKDliL~ii~~lg~~G~~gk~vEF~G~gv~~Ls~~eR~T  291 (334)
                      +||||||++|++++|+++++||++||+|+|+|+|+|++||++|||||+|+++|+++|++|++|||+||||++|||++|||
T Consensus       175 ~la~GvG~~e~~~vmagq~~~~~~P~vv~V~l~G~L~~gVtakDviL~ii~~l~~~G~~g~~vEf~G~gv~~LS~~~R~T  254 (753)
T 1c96_A          175 GICIGVGGADAVDVMAGIPWELKCPKVIGVKLTGSLSGWTSPKDVILKVAGILTVKGGTGAIVEYHGPGVDSISCTGMAT  254 (753)
T ss_dssp             CEEEECCHHHHHHHHHTCCEEEECCEEEEEEEESCCCTTCCHHHHHHHHHHHHTTTTTTTEEEEEESGGGGGSCHHHHHH
T ss_pred             hheeccCHHHHHHHHhCCeeeccCCcEEEEEEeeecCCCccHHHHHHHHHHHhccCCcceEEEEEECCccccCCcchhhh
Confidence            99999999999999997777799999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhhhcCceEeeecCChhHHHHhhhcCC--------CCCccccCCCCCC
Q 019862          292 LCNMVVEAGGKNGVVPADGTTFKYLEDKTS--------LPYEPVYSDEKAR  334 (334)
Q Consensus       292 l~NMa~E~GAk~gi~~pDe~t~~YL~~r~~--------~~~~~~~sD~dA~  334 (334)
                      ||||++|+||++|+||+|++|++||+.+++        ..|+.|++|+||.
T Consensus       255 I~NMa~E~GA~~gifp~De~T~~YL~~~gr~~~~~~~~~y~~~l~~D~~A~  305 (753)
T 1c96_A          255 ICNMGAEIGATTSVFPYNHRMKKYLSKTGRADIANLADEFKDHLVPDPGCH  305 (753)
T ss_dssp             HHHHGGGGTCSEEECCCCHHHHHHHHHTTCHHHHHHHHHTGGGSSCCTTCC
T ss_pred             hhccchhhCcccccccCcHHHHHHHHhcCCcHHHHHHHHHHhhccCCCCCc
Confidence            999999999999999999999999999887        3357899999984
>2b3y_A Iron-responsive element binding protein 1; IRP1 IRE-IRP1 aconitase activity, lyase; 1.85A {Homo sapiens} SCOP: c.8.2.1 c.83.1.1 PDB: 2b3x_A 3snp_A 3sn2_A 2ipy_A Back     alignment and structure
>1l5j_A Aconitate hydratase 2; molecular recognition, RNA binding, citric acid cycle, heat- like domain, lyase; HET: TRA; 2.40A {Escherichia coli} SCOP: a.118.15.1 c.8.2.1 c.83.1.1 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 334
d1l5ja3 490 c.83.1.1 (A:373-862) Aconitase B, C-terminal domai 2e-57
d1acoa2 527 c.83.1.1 (A:2-528) Aconitase A, N-terminal domain 4e-38
d2b3ya2 629 c.83.1.1 (A:2-630) Iron-responsive element binding 7e-33
>d1l5ja3 c.83.1.1 (A:373-862) Aconitase B, C-terminal domain {Escherichia coli [TaxId: 562]} Length = 490 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Aconitase iron-sulfur domain
superfamily: Aconitase iron-sulfur domain
family: Aconitase iron-sulfur domain
domain: Aconitase B, C-terminal domain
species: Escherichia coli [TaxId: 562]

 Score =  191 bits (486), Expect = 2e-57
 Identities = 45/267 (16%), Positives = 74/267 (27%), Gaps = 31/267 (11%)

Query: 69  MTLTEKIFSRASEKPQLSPGDNVWVNVDILMTHDVCGPGSFGIFKKEFGENAKVWDREKI 128
            +L +K+  RA     + PG      +  + + D  GP +    K         +  + +
Sbjct: 10  FSLAQKMVGRACGVKGIRPGAYCEPKMTSVGSQDTTGPMTRDELKD---LACLGFSADLV 66

Query: 129 VIIPDHYIFTSDERANRNVDILRDFCMEQNIKYFYDIKDLGNFKANPDYKGVCHIALAQE 188
           +    H               L DF M +                     GV H  L   
Sbjct: 67  MQSFCHTAAYPKPVDVNTHHTLPDFIMNRGGVSLR------------PGDGVIHSWL--N 112

Query: 189 GHCRPGEVLLGTDSHTCTAGAFGQFATGIGNTDAGFVLGTGKVLLKVPPTLRFVLDGEMP 248
               P  V  G DSHT             G+    F   TG + L +P ++     G+M 
Sbjct: 113 RMLLPDTVGTGGDSHTRFPIGIS---FPAGSGLVAFAAATGVMPLDMPESVLVRFKGKMQ 169

Query: 249 DYLLAKDLILQIIGEISVAGAT----------YKSMEFVGTTVERLSMEERMTLCNMVVE 298
             +  +DL+  I       G            +         +  L +E+   L +   E
Sbjct: 170 PGITLRDLVHAIPLYAIKQGLLTVEKKGKKNIFSGRILEIEGLPDLKVEQAFELTDASAE 229

Query: 299 AGGKNGVVPA-DGTTFKYLEDKTSLPY 324
                  +        +YL     L  
Sbjct: 230 RSAAGCTIKLNKEPIIEYLNSNIVLLK 256
>d1acoa2 c.83.1.1 (A:2-528) Aconitase A, N-terminal domain {Cow (Bos taurus) [TaxId: 9913]} Length = 527 Back     information, alignment and structure
>d2b3ya2 c.83.1.1 (A:2-630) Iron-responsive element binding protein 1, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 629 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query334
d1acoa2 527 Aconitase A, N-terminal domain {Cow (Bos taurus) [ 100.0
d1l5ja3 490 Aconitase B, C-terminal domain {Escherichia coli [ 100.0
d2b3ya2 629 Iron-responsive element binding protein 1, N-termi 100.0
>d1acoa2 c.83.1.1 (A:2-528) Aconitase A, N-terminal domain {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Aconitase iron-sulfur domain
superfamily: Aconitase iron-sulfur domain
family: Aconitase iron-sulfur domain
domain: Aconitase A, N-terminal domain
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=1.6e-73  Score=579.03  Aligned_cols=252  Identities=26%  Similarity=0.357  Sum_probs=225.0

Q ss_pred             CCCCcHHHHHHHHhcCC---CCCCCC-CeEEEeeeEEEecCCChHHHHHHHHHHhCCCCcccCCccEEEEecCCCCCCcH
Q 019862           66 KNAMTLTEKIFSRASEK---PQLSPG-DNVWVNVDILMTHDVCGPGSFGIFKKEFGENAKVWDREKIVIIPDHYIFTSDE  141 (334)
Q Consensus        66 ~~~mTl~EKIla~h~~~---~~v~~G-d~v~v~vD~v~~hD~t~p~~i~~~~~~~G~~~~V~dP~kv~~~~DH~vp~~~~  141 (334)
                      +|||||+||||++|...   ..+.+| ++|.++||++++||+|+|+++..|+ ++| .+++++|.++  ++||++|+...
T Consensus        32 ~rP~TL~EKI~~~Hl~~~~~~~~~~g~~~v~~~vDrv~~hD~T~~~a~~~l~-~~g-~~~~~~p~~v--~~DH~v~~~~~  107 (527)
T d1acoa2          32 NRPLTLSEKIVYGHLDDPANQEIERGKTYLRLRPDRVAMQDATAQMAMLQFI-SSG-LPKVAVPSTI--HCDHLIEAQLG  107 (527)
T ss_dssp             CSCCCHHHHHHHTTBSCTTTCCCCTTTSEEEECCSEEEEEHHHHHHHHHHHH-HHT-CSSCSSCEEE--ECCSSCCBSSC
T ss_pred             CCCcCHHHHHHHHHhcccccCcccCCCceEEEecCEEEEEccchHHHHHHHH-HcC-CCCCCCCCCE--EeCCCcCCccc
Confidence            57999999999999642   234444 6899999999999999999999996 488 4789999876  45999998521


Q ss_pred             H----------HHHHHHHHHHHHHHcCcceeeeccccCCcccCCCCCeeeeeeecceeeeeCCceEEeCCCCCcccCccc
Q 019862          142 R----------ANRNVDILRDFCMEQNIKYFYDIKDLGNFKANPDYKGVCHIALAQEGHCRPGEVLLGTDSHTCTAGAFG  211 (334)
Q Consensus       142 ~----------~a~~~~~lr~fa~~~gi~~f~d~~~~~~~~v~pp~~GI~Hqvl~Eeg~~~PG~vvvGtDSHT~t~GAlG  211 (334)
                      .          +.+.+++++.+++++|+. ||           +|++|||||+++|+ +++||++|+|+||||||+||||
T Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-~~-----------~pg~GI~H~v~~E~-~~~PG~~ivg~DSHT~t~GalG  174 (527)
T d1acoa2         108 GEKDLRRAKDINQEVYNFLATAGAKYGVG-FW-----------RPGSGIIHQIILEN-YAYPGVLLIGTDSHTPNGGGLG  174 (527)
T ss_dssp             HHHHHHHHHHHTHHHHHHHHHHHHHHTCE-EE-----------CTTSBCHHHHHHHH-TCCTTCEEEESSTTGGGGGGGT
T ss_pred             cccchhHHHHHHHHHHHHHHHhhhhhccc-ee-----------ecCCceEEEEcccc-cccCCeEEecCCCCcccccccc
Confidence            1          224467788889999986 45           35689999998875 9999999999999999999999


Q ss_pred             ceeecCchhHHHHHHhcceEEeecCCeEEEEEEeeCCCCCCHHHHHHHHHHHhcccCccceEEEEecccccCCCHHhHHh
Q 019862          212 QFATGIGNTDAGFVLGTGKVLLKVPPTLRFVLDGEMPDYLLAKDLILQIIGEISVAGATYKSMEFVGTTVERLSMEERMT  291 (334)
Q Consensus       212 a~a~GvG~td~a~~l~tG~~wlkvPetvrV~l~G~L~~gV~aKDliL~ii~~lg~~G~~gk~vEF~G~gv~~Ls~~eR~T  291 (334)
                      +||||||++|++++|+||++||++||+|+|+|+|+|++||++|||||+|++.|+.+|++|++|||+|++|++||+++|||
T Consensus       175 ala~GvG~te~~~~~~t~~~~~~vPetv~v~l~G~l~~gvtakDviL~i~~~l~~~g~~g~~vEf~G~~i~~Ls~~~R~T  254 (527)
T d1acoa2         175 GICIGVGGADAVDVMAGIPWELKCPKVIGVKLTGSLSGWTSPKDVILKVAGILTVKGGTGAIVEYHGPGVDSISCTGMAT  254 (527)
T ss_dssp             CEEEECCHHHHHHHHHTCCEEEECCEEEEEEEESCCCTTCCHHHHHHHHHHHHCTTTTBTEEEEEESGGGGGSCHHHHHH
T ss_pred             ceeccCcHHHHHHHHhCCceeecCCcEEEEEEecCCCCCccHHHHHHHHHHHHhhcCCCceeEEEeccccceeccccccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhhhcCceEeeecCChhHHHHhhhcCC--------CCCccccCCCCCC
Q 019862          292 LCNMVVEAGGKNGVVPADGTTFKYLEDKTS--------LPYEPVYSDEKAR  334 (334)
Q Consensus       292 l~NMa~E~GAk~gi~~pDe~t~~YL~~r~~--------~~~~~~~sD~dA~  334 (334)
                      ||||++|+||++||||+|++|++||+.+++        ..|+.+.+|+||.
T Consensus       255 i~NMa~E~GA~~gif~~D~~t~~yl~~~gr~~~~~~~~~~~~~l~~D~~A~  305 (527)
T d1acoa2         255 ICNMGAEIGATTSVFPYNHRMKKYLSKTGRADIANLADEFKDHLVPDSGCH  305 (527)
T ss_dssp             HHHHGGGGTBSEEECCCCHHHHHHHHHTTCHHHHHHHHHTGGGSSCCTTCC
T ss_pred             hhhccccccceeeEEeccHHHHHHHhhcCccchhhcchhhhhhcccccCCc
Confidence            999999999999999999999999998876        2467789999984
>d1l5ja3 c.83.1.1 (A:373-862) Aconitase B, C-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2b3ya2 c.83.1.1 (A:2-630) Iron-responsive element binding protein 1, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure